Psyllid ID: psy15351

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350--
Protein Sequence
MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHESLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDRDFLELDIS
Secondary Structure (PSIPRED)
ccHHHHHHHHHcccccEEEEEEEcccccccccccHHHHHHccccEEEEEEccccccHHHHHHHHHHHHHHcccccEEEEEEcccccccHHHHHHHHHHHHHHHHHHHHHccccccEEEEEcccccccHHHHHHHHHcccccccccccccHHHHHHccccccccccccccEEEEEcccccccHHHHHHHHHcccccccccccccccccEEEEccEEEccccccEEEEEcccccccccccHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHcHHHHHHHHccccccccHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHcccEEEEEEEcccccccccHHHHHHHHccccEEEEEEccccccHHHHHHHHHHHHHccccEHEHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHcccccccHEEEEccccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccccccccccEEEEEEEcccccHHHHHHHHHHHHHHcccEEEEcccccccEEEEEEEEEEEcccEEEEccccEEcccccccHccEEEEEEcccccccccHHHHHHHHHHHHHHHcHHHHHHHcccccccccHHHHHHHHHHHHcHHccccEEcccEccccccHHHHHHHHHHHHHccccccEEccccccHHHcc
Coil and Loop (DISEMBL)
MGRGLKDIEKHLKNVDIVIEVhdsrmpftgrnhLLQQSVQNIRPMVLVLNKRDLINSKHESLIEEKVRKEQSHISEVIftncrnpnckgvqkILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIINALRSshmkkgkavpilptlqhisdnmtryhrtEVYNTTVMVVGVPNVGKSSIINALRsshmkkgkavpvgpkagvtRSVMSQVkisekpliyildtpgislpridnlecGMRLAACATLQDHLVGEINIADYILFYLNrtgnyryvdffnldepsdDIVMLLAKAAIKKKWFKRafdvssnsvrmfpdtGEVARIFIEHFrkgsfgsvmldrdfleldis
Flexible Loop (DISEMBL)
MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHESLIEEKVRKEQSHISeviftncrnpncKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIINALrsshmkkgkavpvgpkagvtrsvmsqvkisekpliyilDTPGISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIKKKWfkrafdvssnsvrmfpdTGEVARIFIEhfrkgsfgsvmldRDFLELDIS
Low Complexity Region (SEG)
MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHESLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDRDFLELDIS
Disordered region (IsUnstruct)
**********HLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKH**LI********SHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIINAL*********************SVMSQVKISEKPLIYILDTPGISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDRDFLE****
Disordered Region (DISOPRED)
MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHESLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMT*****EVYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPILPTLQH**********TEVYNTTVMVVGVPNVGKSSIINALRS**M********GPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDRDFLEL***
Disordered Region (DISEMBL)
MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHESLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIINALRSSH**********PKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDRDFLELDIS
Disordered Region (DISPRO)
*GRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHESLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDRDFL*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHESLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDRDFLELDIS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	352	2.2.26 [Sep-21-2011]
Q17EJ1	316	Mitochondrial GTPase 1 OS	N/A	N/A	0.818	0.911	0.363	2e-61
Q8R2R6	326	Mitochondrial GTPase 1 OS	yes	N/A	0.818	0.883	0.372	2e-58
Q4PS77	332	Mitochondrial GTPase 1 OS	yes	N/A	0.821	0.870	0.365	3e-58
E3TDS3	320	Mitochondrial GTPase 1 OS	N/A	N/A	0.809	0.890	0.372	3e-57
Q9BT17	334	Mitochondrial GTPase 1 OS	yes	N/A	0.818	0.862	0.358	2e-56
Q29AU5	320	Mitochondrial GTPase 1 OS	yes	N/A	0.818	0.9	0.358	1e-53
Q9VCU5	323	Mitochondrial GTPase 1 OS	yes	N/A	0.818	0.891	0.338	2e-52
A9JTX2	311	Mitochondrial GTPase 1 OS	yes	N/A	0.559	0.633	0.452	1e-45
O74776	328	Mitochondrial GTPase 1 OS	yes	N/A	0.809	0.868	0.264	2e-22
B6JW87	328	Mitochondrial GTPase 1 OS	N/A	N/A	0.457	0.490	0.329	4e-18

>sp|Q17EJ1|MTG1_AEDAE Mitochondrial GTPase 1 OS=Aedes aegypti GN=AAEL003813 PE=3 SV=1

 Score =  236 bits (602), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 126/347 (36%), Positives = 196/347 (56%), Gaps = 59/347 (17%)

Query: 1   MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
           MG+G+K +++ LK VD VIEVHD+R+P +GRN   + ++  ++P +LVLNK+D I+ + +
Sbjct: 24  MGKGMKQMQQKLKQVDCVIEVHDARIPLSGRNSEFRYTISGVKPHILVLNKKDKIDRRLQ 83

Query: 61  SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
             + +++++E S    ++FTNC++ +C                                 
Sbjct: 84  GRVVDRLQQEDSEARHILFTNCKDQSC--------------------------------- 110

Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
                      N +R           ++P  Q +  +  R++R +     +M++GVPNVG
Sbjct: 111 -----------NGIRK----------VMPLAQDLILSSNRFNRADQKEYCIMIIGVPNVG 149

Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
           KSS+IN LR+ H+ K  A  VG  AG+TRSV++++KISE PL+Y+LDTPGI  P I + E
Sbjct: 150 KSSLINVLRNRHLNKKGASQVGAVAGITRSVLNKIKISEDPLVYLLDTPGILKPNIADTE 209

Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDI--VMLLAKAA 298
            G+RLA  + LQDHLVGE  IADY+L+ LN+ GN++YV+   L EP+D I  V++     
Sbjct: 210 TGLRLALVSCLQDHLVGEELIADYLLYLLNKRGNFKYVELMGLKEPTDSIAEVLIAGSKH 269

Query: 299 IKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDRD 345
           + K    R +D    S  + PD    AR  I+ FR G+FG +++D D
Sbjct: 270 LDKTVRVRHYD---GSFVIRPDAMLAARHMIKAFRTGAFGKILIDDD 313

Mitochondrial GTPase. May be involved in assembly of the large ribosomal subunit.
Aedes aegypti (taxid: 7159)

>sp|Q8R2R6|MTG1_MOUSE Mitochondrial GTPase 1 OS=Mus musculus GN=Mtg1 PE=2 SV=2

 Score =  226 bits (576), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 130/349 (37%), Positives = 193/349 (55%), Gaps = 61/349 (17%)

Query: 1   MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
           M +GLK ++  LK+VD VIEVHD+R+PF+GRN L Q+ +  ++P +LVLNK DL +   +
Sbjct: 34  MAKGLKKMQSSLKSVDCVIEVHDARIPFSGRNPLFQELL-GLKPHLLVLNKMDLADLTEQ 92

Query: 61  SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
             I +++  E+  +S V+FT                                        
Sbjct: 93  QKIVQRL--EEKGLSNVLFT---------------------------------------- 110

Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
                      N ++  ++K+     I+P +  +     RYHR E     +MVVGVPNVG
Sbjct: 111 -----------NCVKDENIKQ-----IVPKVMELIRCSYRYHRAETPEYCIMVVGVPNVG 154

Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
           KSS+IN+LR  H++ GKA  VG + G+TR+V S++++ E+PL+++LDTPG+  PRI+++E
Sbjct: 155 KSSLINSLRRQHLRTGKAARVGGEPGITRAVTSRIQVCERPLVFLLDTPGVLAPRIESVE 214

Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIK 300
            G++LA C T+ DHLVGE  +ADY+L+ LNR G + YV  + L    D I  +L   AIK
Sbjct: 215 TGLKLALCGTVLDHLVGEETMADYLLYTLNRHGLFGYVQHYALASACDQIEWVLKNVAIK 274

Query: 301 -KKWFKRAFDVSSNSVRMF-PDTGEVARIFIEHFRKGSFGSVMLDRDFL 347
            +K  K      + +V +  PD    AR F+  FR G  G VMLDRD +
Sbjct: 275 LRKTRKVKVLTGTGNVNVIQPDYAMAARDFLRTFRSGLLGQVMLDRDII 323

Mitochondrial GTPase. May be involved in assembly of the large ribosomal subunit.

Mus musculus (taxid: 10090)

>sp|Q4PS77|MTG1_BOVIN Mitochondrial GTPase 1 OS=Bos taurus GN=MTG1 PE=2 SV=2

 Score =  226 bits (575), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 128/350 (36%), Positives = 196/350 (56%), Gaps = 61/350 (17%)

Query: 1   MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
           M +GLK ++  L+ VD +IEVHD+++P +GRN L Q+++  ++P +LVLNK DL + K +
Sbjct: 35  MAKGLKKMQSSLRLVDCIIEVHDAQIPLSGRNPLFQETL-GLKPHLLVLNKMDLADLKEQ 93

Query: 61  SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
             I + + +E   I  V+FT                                        
Sbjct: 94  QKIIQHLEREG--IKHVVFT---------------------------------------- 111

Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
                      N ++  ++K+     ++PT+  +  +  RYHR E     +MV+GVPNVG
Sbjct: 112 -----------NCVKDENVKQ-----VIPTVTELVGSSYRYHRGEHVEYCIMVIGVPNVG 155

Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
           KSS+IN+LR  H++KGKA  VG + G+TR+VMS++++ E+PL+++LDTPG+  PRI ++E
Sbjct: 156 KSSLINSLRRQHLRKGKATRVGGEPGITRAVMSRIQVCERPLMFLLDTPGVLAPRIPSVE 215

Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIK 300
            G++LA C T+ DHLVGE  +AD++L+ LNR     YV  + L E  DDI  +L + A+K
Sbjct: 216 TGLKLALCGTVLDHLVGEETLADFLLYTLNRHQLSGYVQHYGLGEACDDIASVLKRVAVK 275

Query: 301 -KKWFKRAFDVSSNSVRMF-PDTGEVARIFIEHFRKGSFGSVMLDRDFLE 348
            +K  K      + +V +  PD    AR F+  FR G  G VMLDRD L+
Sbjct: 276 LRKTQKVKVLTGTGNVNVIQPDYPAAARDFLRAFRSGLLGPVMLDRDLLQ 325

Mitochondrial GTPase. May be involved in assembly of the large ribosomal subunit.

Bos taurus (taxid: 9913)

>sp|E3TDS3|MTG1_ICTPU Mitochondrial GTPase 1 OS=Ictalurus punctatus GN=mtg1 PE=2 SV=1

 Score =  222 bits (566), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 129/346 (37%), Positives = 203/346 (58%), Gaps = 61/346 (17%)

Query: 1   MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
           M +GLK +    + VD VIE+HD+R+PF+GRN L Q+++ ++RP +L+LNK DL ++  +
Sbjct: 33  MAKGLKQMRASPRKVDCVIEIHDARIPFSGRNPLFQENL-DVRPHLLILNKMDLADTSDK 91

Query: 61  SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
             I +++ ++                  GV+ +L     ++D + +              
Sbjct: 92  MSILKQLERD------------------GVKNVL-----LTDCLKQ-------------- 114

Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
                         R + +KK     I+P +  + +N  R+HR E  +  +MV+GVPNVG
Sbjct: 115 --------------RDTSVKK-----IIPLVTDLIENAPRFHREENRSYCLMVIGVPNVG 155

Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
           KSS+INA+R +++KKGKA  VG + G+T++V++++++ E+P+I++LDTPG+  P+I+N+E
Sbjct: 156 KSSLINAIRRTNLKKGKASRVGGEPGITKAVLTKIQVCERPVIHLLDTPGVLPPKIENIE 215

Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAI- 299
            GM+LA C T+ DHLVGE  IADY+LF LNR   + YV+ ++L+ PSDDI  +L   A+ 
Sbjct: 216 TGMKLALCGTILDHLVGEDIIADYLLFSLNRPQRFGYVERYDLETPSDDIQHVLKCIAVK 275

Query: 300 --KKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
             K +  K    V   +VRM P+    A  FI  FRKG  G VMLD
Sbjct: 276 LGKTQRVKAITGVGDITVRM-PNYTAAAYDFIRAFRKGELGKVMLD 320

Mitochondrial GTPase. May be involved in assembly of the large ribosomal subunit.

Ictalurus punctatus (taxid: 7998)

>sp|Q9BT17|MTG1_HUMAN Mitochondrial GTPase 1 OS=Homo sapiens GN=MTG1 PE=1 SV=2

 Score =  219 bits (558), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 125/349 (35%), Positives = 192/349 (55%), Gaps = 61/349 (17%)

Query: 1   MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
           M +GLK ++  LK VD +IEVHD+R+P +GRN L Q+++  ++P +LVLNK DL +   +
Sbjct: 35  MAKGLKKMQSSLKLVDCIIEVHDARIPLSGRNPLFQETL-GLKPHLLVLNKMDLADLTEQ 93

Query: 61  SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
             I + +  E   +  VIFT                                        
Sbjct: 94  QKIMQHLEGEG--LKNVIFT---------------------------------------- 111

Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
                      N ++  ++K+     I+P +  +     RYHR E     +MV+GVPNVG
Sbjct: 112 -----------NCVKDENVKQ-----IIPMVTELIGRSHRYHRKENLEYCIMVIGVPNVG 155

Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
           KSS+IN+LR  H++KGKA  VG + G+TR+VMS++++SE+PL+++LDTPG+  PRI+++E
Sbjct: 156 KSSLINSLRRQHLRKGKATRVGGEPGITRAVMSKIQVSERPLMFLLDTPGVLAPRIESVE 215

Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIK 300
            G++LA C T+ DHLVGE  +ADY+L+ LN+   + YV  + L    D++  +L   A+K
Sbjct: 216 TGLKLALCGTVLDHLVGEETMADYLLYTLNKHQRFGYVQHYGLGSACDNVERVLKSVAVK 275

Query: 301 --KKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDRDFL 347
             K    +    + N   + P+    AR F++ FR+G  GSVMLD D L
Sbjct: 276 LGKTQKVKVLTGTGNVNIIQPNYPAAARDFLQTFRRGLLGSVMLDLDVL 324

Mitochondrial GTPase. May be involved in assembly of the large ribosomal subunit.

Homo sapiens (taxid: 9606)

>sp|Q29AU5|MTG1_DROPS Mitochondrial GTPase 1 OS=Drosophila pseudoobscura pseudoobscura GN=GA14342 PE=3 SV=2

 Score =  211 bits (536), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 124/346 (35%), Positives = 185/346 (53%), Gaps = 58/346 (16%)

Query: 1   MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSV--QNIRPMVLVLNKRDLINSK 58
           M +G++ I++ L+NVD ++E+HDSR+P  GRN     ++    ++P +LVLNK DL+  K
Sbjct: 27  MNKGMRQIQQKLRNVDCIVEIHDSRIPLAGRNSQFFDTITGSGVKPHILVLNKVDLLGPK 86

Query: 59  HESLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVM 118
            +  + +++R++Q  +  ++FTN     CK                 R H          
Sbjct: 87  QQRSVLQQLRRQQPELKNILFTN-----CKD---------------QRNH---------- 116

Query: 119 VVGVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPN 178
             GV                      + ILP    +  + +RY+R +     +M++GVPN
Sbjct: 117 --GV----------------------LDILPLATQLVGDSSRYNRAQSAEHNIMIIGVPN 152

Query: 179 VGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDN 238
           VGKSSIIN LR+ H+KK  A  VG +AGVTR+V  ++KI EKP +Y++DTPGI  P + +
Sbjct: 153 VGKSSIINVLRNVHLKKRSAARVGAEAGVTRAVGERIKIQEKPAVYMIDTPGILQPSVTD 212

Query: 239 LECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDE-PSDDIVMLLAKA 297
            E GM+LA    L DH+VGE  IADY+L++LN+   Y YV+  +L   PSD+I  +LA+ 
Sbjct: 213 DEMGMKLALVGCLPDHIVGEDLIADYLLYWLNKHRRYEYVEKLSLSSGPSDNISAVLAEY 272

Query: 298 AIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
           A     F R        V +  +    AR FI+ FR G  GS+ LD
Sbjct: 273 AQTHGMFHRVKQYDG-QVEVMTNLLAAARKFIQFFRTGQLGSINLD 317

Mitochondrial GTPase. May be involved in assembly of the large ribosomal subunit.

Drosophila pseudoobscura pseudoobscura (taxid: 46245)

>sp|Q9VCU5|MTG1_DROME Mitochondrial GTPase 1 OS=Drosophila melanogaster GN=CG17141 PE=1 SV=2

 Score =  206 bits (524), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 117/346 (33%), Positives = 181/346 (52%), Gaps = 58/346 (16%)

Query: 1   MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSV--QNIRPMVLVLNKRDLINSK 58
           M +G++ I++ L+NVD ++E+HD+R+P  GRN     ++    ++P +LVLNK DL+ +K
Sbjct: 27  MTKGMRQIQQKLRNVDCIVEIHDARIPLAGRNSQFFDTITGSGVKPHILVLNKVDLLGAK 86

Query: 59  HESLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVM 118
            +  + +++R++Q  +  ++FTN     CK                              
Sbjct: 87  QQKSVLQQLRRQQPELQHILFTN-----CKD----------------------------- 112

Query: 119 VVGVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPN 178
                                +    + ILP    +    +R++RT+     +M++GVPN
Sbjct: 113 --------------------QRNNGVLDILPLATRLVSESSRFNRTQAAEHNLMIIGVPN 152

Query: 179 VGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDN 238
           VGKSS+IN LR+ H+KK  A  VG +AG+TRSV  ++KI E P +Y++DTPGI  P I +
Sbjct: 153 VGKSSVINVLRNVHLKKKSAARVGAEAGITRSVGERIKIQENPPVYMIDTPGILQPSIKD 212

Query: 239 LECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDE-PSDDIVMLLAKA 297
            E GM+LA    L DH+VGE  IADY+L++LN    Y YV+   L   PSDDI  +LA+ 
Sbjct: 213 DEMGMKLALVGCLPDHIVGEDLIADYLLYWLNSHRKYDYVEMLKLSSGPSDDISAVLAEY 272

Query: 298 AIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
           A +++ F +        V +  +    AR FI  FR G  G + LD
Sbjct: 273 AHREELFHKVKQYDGR-VEVMTNLLAAARKFIHFFRSGQLGHMNLD 317

Mitochondrial GTPase. May be involved in assembly of the large ribosomal subunit.

Drosophila melanogaster (taxid: 7227)

>sp|A9JTX2|MTG1_XENTR Mitochondrial GTPase 1 OS=Xenopus tropicalis GN=mtg1 PE=2 SV=1

 Score =  184 bits (466), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 90/199 (45%), Positives = 131/199 (65%), Gaps = 2/199 (1%)

Query: 147 ILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAG 206
           ++P +  +     R+HR E   T +MV+GVPNVGKSS+INALR  H++KGKA  VG + G
Sbjct: 113 VVPVISELVGCSQRFHREENTETCIMVIGVPNVGKSSLINALRRMHLRKGKASRVGAEPG 172

Query: 207 VTRSVMSQVKISEKPLIYILDTPGISLPRIDNLECGMRLAACATLQDHLVGEINIADYIL 266
           +TRSV++++++SE PLI++ DTPG+  PRI+++E GM+LA C T+ DHLVGE  +ADY+L
Sbjct: 173 ITRSVLTKIQVSESPLIFLFDTPGVLSPRIESVETGMKLALCGTILDHLVGEDIMADYLL 232

Query: 267 FYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIK--KKWFKRAFDVSSNSVRMFPDTGEV 324
           + LN+   +RYV+ + L++P  DI  LL + A+K  K    +A     +     P+    
Sbjct: 233 YILNQQMQHRYVEHYGLEKPCADIETLLKRIALKLGKTQKVKAITGVGDVNITVPNYNAA 292

Query: 325 ARIFIEHFRKGSFGSVMLD 343
           A  FI  FR+G  G VMLD
Sbjct: 293 AYDFIRTFRRGQLGVVMLD 311

Mitochondrial GTPase. May be involved in assembly of the large ribosomal subunit.

Xenopus tropicalis (taxid: 8364)

>sp|O74776|MTG1_SCHPO Mitochondrial GTPase 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mtg1 PE=3 SV=1

 Score =  106 bits (265), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 91/344 (26%), Positives = 155/344 (45%), Gaps = 59/344 (17%)

Query: 1   MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
           M + LK ++    + DI +EV D+R+P T RN++++  + N +  ++V NK DL ++ H 
Sbjct: 22  MNKTLKRLKNLTSSNDIFVEVRDARIPLTSRNYVMEDFL-NKKNRIIVYNKCDLADTFH- 79

Query: 61  SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
              + KV K +                  +Q +    Q++      +  T     +  + 
Sbjct: 80  --TKAKVSKHR------------------IQNLAQQFQNVE---CWFKETSTPEKSAFIT 116

Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
             P V K+               A  +L  ++ + D  +   R  VY      VG+PN G
Sbjct: 117 --PYVSKAPYF------------AKELLRLIRTLVDQASANGRVYVY-----FVGMPNTG 157

Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
           KSSI+N+LR+  ++K K+  VG   GVT+ +   V++     +Y+LDTPGI  P I   E
Sbjct: 158 KSSILNSLRNVALRKSKSAIVGNYPGVTKRISEIVRLFNDMDVYMLDTPGIMTPSITKPE 217

Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIK 300
             ++L+    +++ +V  + + DY+LF+LNR     Y  +     P++D+   L   A K
Sbjct: 218 DMLKLSLVGCVKEGIVHPVTVVDYLLFHLNRIDPSLYSKW---SLPTNDVDEFLQNTAYK 274

Query: 301 -KKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
            +K  K  F           D   V+   I+ +R G  G   LD
Sbjct: 275 ARKLTKGGF-----------DENFVSNYVIQQYRIGRLGRFQLD 307

Mitochondrial GTPase involved in assembly of the large ribosomal subunit. Plays a role in expression of the mitochondrial translational machinery.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|B6JW87|MTG1_SCHJY Mitochondrial GTPase 1 OS=Schizosaccharomyces japonicus (strain yFS275 / FY16936) GN=mtg1 PE=3 SV=1

 Score = 92.4 bits (228), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 57/173 (32%), Positives = 90/173 (52%), Gaps = 12/173 (6%)

Query: 171 VMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPG 230
           V VVG+PNVGKSS++NALR + + + K   VG   GVTR+V   V++ E   +Y++DTPG
Sbjct: 136 VFVVGMPNVGKSSVMNALRHASLHRRKVAVVGSHPGVTRNVGEVVRLFEGKNVYMVDTPG 195

Query: 231 ISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDI 290
           I LP I   E  ++ A    ++D  +    + DY+L+ LN      Y     L  P++D+
Sbjct: 196 IMLPTILQPEDAIKFALVHAMKDGRLHNAVVVDYLLYRLNLIDPNTYT---RLSSPTNDV 252

Query: 291 VMLLAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
              L  AA+      +   V+ +          +A   ++ +R G FG+ +LD
Sbjct: 253 STFLHNAAVHTGKLGKGGTVNDDL---------IASYVLQLYRTGFFGAFVLD 296

Mitochondrial GTPase involved in assembly of the large ribosomal subunit. Plays a role in expression of the mitochondrial translational machinery.

Schizosaccharomyces japonicus (strain yFS275 / FY16936) (taxid: 402676)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	352
328713005	314	PREDICTED: mitochondrial GTPase 1-like [	0.826	0.926	0.400	2e-68
357616532	335	mitochondrial GTPase 1 [Danaus plexippus	0.826	0.868	0.391	2e-64
91086203	317	PREDICTED: similar to Mitochondrial GTPa	0.821	0.911	0.391	5e-64
158297975	326	AGAP004736-PA [Anopheles gambiae str. PE	0.823	0.889	0.388	1e-63
350593188	408	PREDICTED: mitochondrial GTPase 1 [Sus s	0.948	0.818	0.377	7e-62
157138211	316	hypothetical protein AaeL_AAEL003813 [Ae	0.818	0.911	0.363	1e-59
395501203	336	PREDICTED: mitochondrial GTPase 1 [Sarco	0.821	0.860	0.391	9e-59
350593186	332	PREDICTED: mitochondrial GTPase 1 isofor	0.821	0.870	0.368	8e-58
170064624	315	mitochondrial GTPase 1 [Culex quinquefas	0.826	0.923	0.368	9e-58
348507344	319	PREDICTED: mitochondrial GTPase 1-like [	0.812	0.896	0.368	2e-57

>gi|328713005|ref|XP_003244970.1| PREDICTED: mitochondrial GTPase 1-like [Acyrthosiphon pisum]

 Score =  265 bits (678), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 139/347 (40%), Positives = 206/347 (59%), Gaps = 56/347 (16%)

Query: 1   MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
           MG+G+K +++ LK+VD +IEVHD+R+P +GRN   + S+  ++P +LVLNK DL +  ++
Sbjct: 24  MGKGMKQMQQKLKSVDCIIEVHDARIPLSGRNPDFKYSISGLKPHILVLNKMDLADLNYK 83

Query: 61  SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
             +EEK+  EQ  IS++I+TNC+N  C                                 
Sbjct: 84  QKVEEKIMHEQK-ISKIIYTNCKNSLC--------------------------------- 109

Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
             P V K                   ++PT   +     RY+R+E  ++ +MV+GVPNVG
Sbjct: 110 --PGVKK-------------------VMPTALSLIKGSNRYNRSENTDSRIMVIGVPNVG 148

Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
           KSS+IN++R++ + K  A PVG  AG+TR+V +Q+K+S  PL+Y+LDTPG+  P I N+E
Sbjct: 149 KSSLINSIRNTILGKKSAAPVGAVAGITRAVQNQIKVSHDPLVYVLDTPGVVSPTIKNVE 208

Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIK 300
            G++LA CATLQDHLVGE  IADY+L++ N+   + YV + N DEP+DDI ++LAKAAI 
Sbjct: 209 TGLKLALCATLQDHLVGEEIIADYLLYWFNKNNYFDYVSYLNCDEPTDDIRIVLAKAAIH 268

Query: 301 KKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDRDFL 347
           +K   +  +   + +   PD   +AR F+  FR G FG V+LD D L
Sbjct: 269 RKSSIKYLNFDGSYIYR-PDMQGMARNFLNAFRTGVFGKVLLDNDLL 314

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357616532|gb|EHJ70245.1| mitochondrial GTPase 1 [Danaus plexippus]

 Score =  252 bits (644), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 136/347 (39%), Positives = 201/347 (57%), Gaps = 56/347 (16%)

Query: 1   MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
           M +GLK +++ LK+VD VIEVHD+R+PF+GRN +   ++   +P +LV NK+DL   K  
Sbjct: 31  MNKGLKQMQRKLKSVDCVIEVHDARIPFSGRNPIFTSTITGAKPHILVFNKKDLTIPKLL 90

Query: 61  SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
             +++++R+E+  I  V+FTNC++ +C+G                               
Sbjct: 91  PKVKDQLREEEG-IQNVVFTNCKDQSCRG------------------------------- 118

Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
                     + +LR             P +  +  N  RY+R+E  +  VM++GVPNVG
Sbjct: 119 ----------LKSLR-------------PLIVDLIKNSNRYNRSEEIDYNVMIIGVPNVG 155

Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
           KSS+IN LRS++M    A+PVG  AGVTRS+M+++KI+  P I++ DTPGI  P + ++E
Sbjct: 156 KSSLINMLRSTYMHVRHALPVGAVAGVTRSLMTKMKINNNPKIFMFDTPGILEPSVKDVE 215

Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIK 300
            G++LA CA+LQDHLVGE  IADY+L++LN   N++YVD+  L EPSDDI  +L   A+K
Sbjct: 216 MGLKLALCASLQDHLVGEEAIADYLLYWLNSHNNFKYVDYMGLLEPSDDIHKVLISGAVK 275

Query: 301 KKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDRDFL 347
               +   D    + R  PD  EVAR+ I+ FR G  G  +LD D L
Sbjct: 276 FNRVRTTRDFDGRT-RTVPDVLEVARVMIKAFRTGELGKTLLDVDML 321

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91086203|ref|XP_971754.1| PREDICTED: similar to Mitochondrial GTPase 1, mitochondrial precursor (GTP-binding protein 7) [Tribolium castaneum] gi|270010239|gb|EFA06687.1| hypothetical protein TcasGA2_TC009617 [Tribolium castaneum]

 Score =  251 bits (640), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 136/347 (39%), Positives = 205/347 (59%), Gaps = 58/347 (16%)

Query: 1   MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
           MGRGLK ++  L+++D +IEVHD+R+P +GRN   + ++  I+P +LVLNK DLI+ K  
Sbjct: 29  MGRGLKQMQHKLRSIDCIIEVHDARIPISGRNTDFKYTISGIKPHILVLNKVDLIDKKLI 88

Query: 61  SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
             I+ +++ E      V+FTN     CK             D   +  +T          
Sbjct: 89  PSIKNRLKNE---FENVVFTN-----CK-------------DQQCKGVKT---------- 117

Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
                                     + P  Q++  N  R++R++  +  VM++GVPNVG
Sbjct: 118 --------------------------LFPLAQNLIKNSDRFNRSQAEDQCVMIIGVPNVG 151

Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
           KSS+INALR  ++ KG A  VG   G+TRSV++++K+SE PL Y+LDTPGI  P+I++ E
Sbjct: 152 KSSLINALRVRNLHKGNATHVGATPGITRSVLTKIKMSEDPLCYMLDTPGILTPKIESAE 211

Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIK 300
            G++LA CAT+QDHLVGE  IADY+LF+LN+ G+Y YV FF L++ +DDI+ +LA+ ++K
Sbjct: 212 VGLKLALCATIQDHLVGEGVIADYLLFWLNKNGHYNYVKFFGLEKATDDILEVLAQISVK 271

Query: 301 KKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDRDFL 347
           KK   +  D ++N V   PD    A++ ++ FRKG  G ++LD D L
Sbjct: 272 KKKMLKLRDNTNNYVYK-PDLDYGAKVMLQAFRKGDLGKIVLDEDLL 317

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|158297975|ref|XP_318086.4| AGAP004736-PA [Anopheles gambiae str. PEST] gi|157014585|gb|EAA13293.4| AGAP004736-PA [Anopheles gambiae str. PEST]

 Score =  249 bits (637), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 134/345 (38%), Positives = 194/345 (56%), Gaps = 55/345 (15%)

Query: 1   MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
           MG+G+K +++ LK +D VIEVHD+R+P TGRN   + ++  I+P + VLNK DLI    E
Sbjct: 23  MGKGMKQMQQKLKQIDCVIEVHDARIPLTGRNTEFKHTISGIKPHIFVLNKSDLIEKHFE 82

Query: 61  SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
             I E++++E      V+FTNC+N +C+G++                             
Sbjct: 83  GKIIERLQQENQDTMHVLFTNCKNQSCRGLR----------------------------- 113

Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
                                 K +P+  TL + SD   R++R+      +M++GVPNVG
Sbjct: 114 ----------------------KLMPLAQTLINSSD---RFNRSSQREFCIMIIGVPNVG 148

Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
           KSS+IN LR+ H+ K  A  VG  AGVTRSV++++KI E P IY+LDTPGI  P I + E
Sbjct: 149 KSSLINVLRNRHLNKKGASQVGAVAGVTRSVLNRIKICEDPAIYLLDTPGILEPNIADTE 208

Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIK 300
            G+RLA  + LQDHLVGE  IADY+LF LN+  N+RYV+   L EP+D I   L  +A+ 
Sbjct: 209 TGLRLALVSCLQDHLVGEELIADYLLFLLNKQRNFRYVEIMGLPEPTDSIASALVASAVH 268

Query: 301 KKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDRD 345
                R   +   SV + PD    A++ ++ FR G+FG+++LD D
Sbjct: 269 LNKMIRTKQLDGTSV-LRPDVNMAAKLMLKSFRTGAFGNILLDED 312

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350593188|ref|XP_003483631.1| PREDICTED: mitochondrial GTPase 1 [Sus scrofa]

 Score =  243 bits (621), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 144/381 (37%), Positives = 216/381 (56%), Gaps = 47/381 (12%)

Query: 1   MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
           M +GL+ ++  LK VD ++EVHD+R+P +GRN L Q+++  ++P +LVLNK DL + K +
Sbjct: 35  MAKGLRKMQSSLKLVDCILEVHDARIPLSGRNPLFQETL-GLKPHLLVLNKMDLADLKEQ 93

Query: 61  SLIEEKVRKEQSHISEVIFTNC-RNPN-----CKGVQKILPT-LQHISDNMTRYHRTEVY 113
             I + + +E   +  VIFTNC ++ N     C  V+K  P+ L     +  R    E +
Sbjct: 94  QKIMQHLERE--GLKNVIFTNCVKDENIKQLLCVAVRKWWPSELPPSGGSPARSWWREGH 151

Query: 114 NTTVMVVGVPNVG----KSSIINALRSSHMKK------GKAVP------ILPTLQHISDN 157
                    PN G    ++     LR     +      G+  P      I+P +  +  +
Sbjct: 152 PRRSCS---PNRGCAWSRAVWFWMLRRPPWTRRGAGLTGQRPPAVDWLQIIPKVTELVGS 208

Query: 158 MTRYHRTEVYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKI 217
             RYHR E     +MV+GVPNVGKSS+INALR  H++KGKA  VG + G+TR+VMS+V++
Sbjct: 209 SCRYHRGESVEYCIMVIGVPNVGKSSLINALRRQHLRKGKATKVGGEPGITRAVMSRVQV 268

Query: 218 SEKPLIYILDTPGISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRY 277
            E+PL+++LDTPG+  PRI N+E G++LA C T+ DHLVGE  +ADY+L+ LNR     Y
Sbjct: 269 CERPLMFLLDTPGVLAPRIQNVETGLKLALCGTVLDHLVGEETLADYLLYTLNRHQLLGY 328

Query: 278 VDFFNLDEPSDDIVMLLAKAAIKKKWFKRAFDVSSNSVRMFPDTGEV----------ARI 327
           V  + L +  DDI  +L + A++ +         +  V++   TG+V          AR 
Sbjct: 329 VQHYGLGQACDDITSVLKQVAVRLR--------KTQKVKVLTGTGDVNVVQPNYPAAARD 380

Query: 328 FIEHFRKGSFGSVMLDRDFLE 348
           F+  FR G+ G VMLDRD L+
Sbjct: 381 FLRAFRSGALGPVMLDRDILQ 401

Source: Sus scrofa

Species: Sus scrofa

Genus: Sus

Family: Suidae

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|157138211|ref|XP_001664178.1| hypothetical protein AaeL_AAEL003813 [Aedes aegypti] gi|122068838|sp|Q17EJ1.1|MTG1_AEDAE RecName: Full=Mitochondrial GTPase 1; Flags: Precursor gi|108880663|gb|EAT44888.1| AAEL003813-PA [Aedes aegypti]

 Score =  236 bits (602), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 126/347 (36%), Positives = 196/347 (56%), Gaps = 59/347 (17%)

Query: 1   MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
           MG+G+K +++ LK VD VIEVHD+R+P +GRN   + ++  ++P +LVLNK+D I+ + +
Sbjct: 24  MGKGMKQMQQKLKQVDCVIEVHDARIPLSGRNSEFRYTISGVKPHILVLNKKDKIDRRLQ 83

Query: 61  SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
             + +++++E S    ++FTNC++ +C                                 
Sbjct: 84  GRVVDRLQQEDSEARHILFTNCKDQSC--------------------------------- 110

Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
                      N +R           ++P  Q +  +  R++R +     +M++GVPNVG
Sbjct: 111 -----------NGIRK----------VMPLAQDLILSSNRFNRADQKEYCIMIIGVPNVG 149

Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
           KSS+IN LR+ H+ K  A  VG  AG+TRSV++++KISE PL+Y+LDTPGI  P I + E
Sbjct: 150 KSSLINVLRNRHLNKKGASQVGAVAGITRSVLNKIKISEDPLVYLLDTPGILKPNIADTE 209

Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDI--VMLLAKAA 298
            G+RLA  + LQDHLVGE  IADY+L+ LN+ GN++YV+   L EP+D I  V++     
Sbjct: 210 TGLRLALVSCLQDHLVGEELIADYLLYLLNKRGNFKYVELMGLKEPTDSIAEVLIAGSKH 269

Query: 299 IKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDRD 345
           + K    R +D    S  + PD    AR  I+ FR G+FG +++D D
Sbjct: 270 LDKTVRVRHYD---GSFVIRPDAMLAARHMIKAFRTGAFGKILIDDD 313

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|395501203|ref|XP_003754987.1| PREDICTED: mitochondrial GTPase 1 [Sarcophilus harrisii]

 Score =  233 bits (594), Expect = 9e-59,   Method: Compositional matrix adjust.
 Identities = 137/350 (39%), Positives = 195/350 (55%), Gaps = 61/350 (17%)

Query: 1   MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
           M +GLK ++  LK VD +IEVHD+R+P +GRN L Q+++  I+P +LVLNK DL + K +
Sbjct: 35  MAKGLKKMQSSLKLVDCIIEVHDARIPLSGRNPLFQETL-GIKPHLLVLNKMDLADLKEK 93

Query: 61  SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
             I  ++ KE   +  VIFT                                        
Sbjct: 94  QKILGRLNKE--GVKNVIFT---------------------------------------- 111

Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
                      N L+  ++K+     I+PT+  + ++  RYHR E     +MV+GVPNVG
Sbjct: 112 -----------NCLKDENIKQ-----IVPTVTELIESGYRYHRGENLEYCIMVIGVPNVG 155

Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
           KSS+IN+LR  H+KKGKA  VG   G+TR+VMS++++ E+PL+++LDTPG+  PRI ++E
Sbjct: 156 KSSLINSLRRQHLKKGKASRVGGDPGITRAVMSKIQVCERPLMFLLDTPGVLAPRIPDVE 215

Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIK 300
            G++LA C T+ DHLVGE  IADY+LF LN+   +RYV+ ++L E  DDI  +L + AIK
Sbjct: 216 TGLKLATCGTILDHLVGEDIIADYLLFSLNKQQQFRYVEHYDLGEACDDIGSVLKRIAIK 275

Query: 301 -KKWFKRAFDVSSNSVRMF-PDTGEVARIFIEHFRKGSFGSVMLDRDFLE 348
            KK  K      +  V +  P+    A  FI  FR G  G VM D   LE
Sbjct: 276 LKKIHKVKVLTGTGDVNVIQPNYSAAAYDFIRSFRNGLLGQVMFDTAILE 325

Source: Sarcophilus harrisii

Species: Sarcophilus harrisii

Genus: Sarcophilus

Family: Dasyuridae

Order: Dasyuromorphia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|350593186|ref|XP_001927683.3| PREDICTED: mitochondrial GTPase 1 isoform 1 [Sus scrofa]

 Score =  230 bits (586), Expect = 8e-58,   Method: Compositional matrix adjust.
 Identities = 129/350 (36%), Positives = 195/350 (55%), Gaps = 61/350 (17%)

Query: 1   MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
           M +GL+ ++  LK VD ++EVHD+R+P +GRN L Q+++  ++P +LVLNK DL + K +
Sbjct: 35  MAKGLRKMQSSLKLVDCILEVHDARIPLSGRNPLFQETL-GLKPHLLVLNKMDLADLKEQ 93

Query: 61  SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
             I + + +E   +  VIFT                                        
Sbjct: 94  QKIMQHLERE--GLKNVIFT---------------------------------------- 111

Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
                      N ++  ++K+     I+P +  +  +  RYHR E     +MV+GVPNVG
Sbjct: 112 -----------NCVKDENIKQ-----IIPKVTELVGSSCRYHRGESVEYCIMVIGVPNVG 155

Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
           KSS+INALR  H++KGKA  VG + G+TR+VMS+V++ E+PL+++LDTPG+  PRI N+E
Sbjct: 156 KSSLINALRRQHLRKGKATKVGGEPGITRAVMSRVQVCERPLMFLLDTPGVLAPRIQNVE 215

Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIK 300
            G++LA C T+ DHLVGE  +ADY+L+ LNR     YV  + L +  DDI  +L + A++
Sbjct: 216 TGLKLALCGTVLDHLVGEETLADYLLYTLNRHQLLGYVQHYGLGQACDDITSVLKQVAVR 275

Query: 301 -KKWFKRAFDVSSNSVRMF-PDTGEVARIFIEHFRKGSFGSVMLDRDFLE 348
            +K  K      +  V +  P+    AR F+  FR G+ G VMLDRD L+
Sbjct: 276 LRKTQKVKVLTGTGDVNVVQPNYPAAARDFLRAFRSGALGPVMLDRDILQ 325

Source: Sus scrofa

Species: Sus scrofa

Genus: Sus

Family: Suidae

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|170064624|ref|XP_001867602.1| mitochondrial GTPase 1 [Culex quinquefasciatus] gi|167881951|gb|EDS45334.1| mitochondrial GTPase 1 [Culex quinquefasciatus]

 Score =  230 bits (586), Expect = 9e-58,   Method: Compositional matrix adjust.
 Identities = 129/350 (36%), Positives = 191/350 (54%), Gaps = 59/350 (16%)

Query: 1   MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
           MG+G+K +++ LK VD VIEVHD+R+P +GRN   + ++  ++P VLVLNK+D I  + +
Sbjct: 23  MGKGIKQMQQKLKQVDCVIEVHDARIPLSGRNSEFRYTISGVKPHVLVLNKKDTIERRSQ 82

Query: 61  SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
             I +++R E S    V+FT     NC                                 
Sbjct: 83  RAILDRLRGEDSEARHVLFT-----NC--------------------------------- 104

Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
                 K    + +R           ++P  Q +     R++R++     +M++GVPNVG
Sbjct: 105 ------KDQSCDGIRK----------VMPLAQDLILGSNRFNRSDQKEYCIMIIGVPNVG 148

Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
           KSS+IN LR+ H+ +  A  VG  AG+TRSV+ ++KI E PL+Y+LDTPGI  P I + E
Sbjct: 149 KSSLINVLRNRHLNRKGASQVGAVAGITRSVLHKIKICEDPLVYLLDTPGILKPNIADTE 208

Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAA-- 298
            G+RLA  + LQDHLVGE  IADY+L+ LN+  N+RYV+   L EP+D I  +L   A  
Sbjct: 209 TGLRLALVSCLQDHLVGEELIADYLLYLLNKRNNFRYVEMMGLQEPTDSIAEVLVSGAQH 268

Query: 299 IKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDRDFLE 348
           + +    R FD    S+ + PD    AR  I+ FR G+FG +++D D +E
Sbjct: 269 LNRTLKVRNFD---GSIVVRPDVTLAARHMIKSFRTGAFGKILIDSDKIE 315

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|348507344|ref|XP_003441216.1| PREDICTED: mitochondrial GTPase 1-like [Oreochromis niloticus]

 Score =  229 bits (583), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 127/345 (36%), Positives = 201/345 (58%), Gaps = 59/345 (17%)

Query: 1   MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
           M +GLK +  +LK+VD +IE+HD+R+PF+GRN + Q ++ + +P +L+LNK DL +  ++
Sbjct: 32  MAKGLKQMRANLKSVDCIIEIHDARIPFSGRNPVFQDTL-SAKPHLLILNKMDLADLSNK 90

Query: 61  SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
             I +K+ KE   ++ V+FT+C              L+   DN+ +              
Sbjct: 91  QRILKKLEKEG--MTHVLFTDC--------------LKQRDDNIKK-------------- 120

Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
                                     ++P +  I  +  R++R E  N  +MV+GVPNVG
Sbjct: 121 --------------------------LVPMVMDIIASKPRFNREENTNYCLMVIGVPNVG 154

Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
           KSS+IN+LR +++KKG+A  VG + G+T++V++++++ E+P++Y+LDTPG+  P+I+++E
Sbjct: 155 KSSLINSLRRTNLKKGRASRVGGEPGITKAVLTKIQVCERPIMYLLDTPGVLPPKIESVE 214

Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIK 300
            GM+LA C T+ DHLVGE  IADY+L+ LNR G + YV+ ++L EPSDDI  +L + A+K
Sbjct: 215 TGMKLALCGTILDHLVGEDIIADYLLYSLNRLGKFSYVEKYDLQEPSDDIQHVLKRIAVK 274

Query: 301 --KKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
             K    +A     N     P+    A  FI  FRKG  G VMLD
Sbjct: 275 LGKTQRVKAITGVGNVTITIPNYTAAAYDFIRAFRKGELGQVMLD 319

Source: Oreochromis niloticus

Species: Oreochromis niloticus

Genus: Oreochromis

Family: Cichlidae

Order: Perciformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	352
UNIPROTKB|I3LR29	336	LOC100153322 "Mitochondrial GT	0.630	0.660	0.428	3.4e-45
UNIPROTKB|Q4PS77	332	MTG1 "Mitochondrial GTPase 1"	0.644	0.683	0.414	7.1e-45
ZFIN|ZDB-GENE-031110-2	248	gtpbpl "GTP binding protein li	0.559	0.794	0.462	3.1e-44
MGI|MGI:2685015	326	Mtg1 "mitochondrial GTPase 1 h	0.642	0.693	0.421	1e-43
UNIPROTKB|E7EVK2	283	MTG1 "Mitochondrial GTPase 1"	0.375	0.466	0.410	1.2e-43
UNIPROTKB|Q9BT17	334	MTG1 "Mitochondrial GTPase 1"	0.613	0.646	0.422	1.7e-43
UNIPROTKB|E9PI62	339	MTG1 "Mitochondrial GTPase 1"	0.613	0.637	0.422	1.7e-43
RGD|6497155	326	LOC100910751 "mitochondrial GT	0.642	0.693	0.421	7.3e-43
UNIPROTKB|J9NSS4	212	LOC607676 "Uncharacterized pro	0.571	0.948	0.438	4e-42
FB|FBgn0039020	323	CG17141 [Drosophila melanogast	0.556	0.606	0.434	8.9e-38

UNIPROTKB|I3LR29 LOC100153322 "Mitochondrial GTPase 1" [Sus scrofa (taxid:9823)]

 Score = 475 (172.3 bits), Expect = 3.4e-45, P = 3.4e-45
 Identities = 96/224 (42%), Positives = 142/224 (63%)

Query:   127 KSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIIN 186
             +  + N + ++ +K      I+P +  +  +  RYHR E     +MV+GVPNVGKSS+IN
Sbjct:   106 REGLKNVIFTNCVKDENIKQIIPKVTELVGSSCRYHRGESVEYCIMVIGVPNVGKSSLIN 165

Query:   187 ALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLECGMRLA 246
             ALR  H++KGKA  VG + G+TR+VMS+V++ E+PL+++LDTPG+  PRI N+E G++LA
Sbjct:   166 ALRRQHLRKGKATKVGGEPGITRAVMSRVQVCERPLMFLLDTPGVLAPRIQNVETGLKLA 225

Query:   247 ACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIK-KKWFK 305
              C T+ DHLVGE  +ADY+L+ LNR     YV  + L +  DDI  +L + A++ +K  K
Sbjct:   226 LCGTVLDHLVGEETLADYLLYTLNRHQLLGYVQHYGLGQACDDITSVLKQVAVRLRKTQK 285

Query:   306 RAFDVSSNSVRMF-PDTGEVARIFIEHFRKGSFGSVMLDRDFLE 348
                   +  V +  P+    AR F+  FR G+ G VMLDRD L+
Sbjct:   286 VKVLTGTGDVNVVQPNYPAAARDFLRAFRSGALGPVMLDRDILQ 329

GO:0005739 "mitochondrion" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

UNIPROTKB|Q4PS77 MTG1 "Mitochondrial GTPase 1" [Bos taurus (taxid:9913)]

 Score = 472 (171.2 bits), Expect = 7.1e-45, P = 7.1e-45
 Identities = 95/229 (41%), Positives = 146/229 (63%)

Query:   122 VPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGK 181
             + ++ +  I + + ++ +K      ++PT+  +  +  RYHR E     +MV+GVPNVGK
Sbjct:    97 IQHLEREGIKHVVFTNCVKDENVKQVIPTVTELVGSSYRYHRGEHVEYCIMVIGVPNVGK 156

Query:   182 SSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLEC 241
             SS+IN+LR  H++KGKA  VG + G+TR+VMS++++ E+PL+++LDTPG+  PRI ++E 
Sbjct:   157 SSLINSLRRQHLRKGKATRVGGEPGITRAVMSRIQVCERPLMFLLDTPGVLAPRIPSVET 216

Query:   242 GMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIK- 300
             G++LA C T+ DHLVGE  +AD++L+ LNR     YV  + L E  DDI  +L + A+K 
Sbjct:   217 GLKLALCGTVLDHLVGEETLADFLLYTLNRHQLSGYVQHYGLGEACDDIASVLKRVAVKL 276

Query:   301 KKWFKRAFDVSSNSVRMF-PDTGEVARIFIEHFRKGSFGSVMLDRDFLE 348
             +K  K      + +V +  PD    AR F+  FR G  G VMLDRD L+
Sbjct:   277 RKTQKVKVLTGTGNVNVIQPDYPAAARDFLRAFRSGLLGPVMLDRDLLQ 325

GO:0006184 "GTP catabolic process" evidence=IBA

GO:0042254 "ribosome biogenesis" evidence=IBA

GO:0005739 "mitochondrion" evidence=IBA

GO:0003924 "GTPase activity" evidence=IBA

GO:0005525 "GTP binding" evidence=IEA

ZFIN|ZDB-GENE-031110-2 gtpbpl "GTP binding protein like" [Danio rerio (taxid:7955)]

 Score = 466 (169.1 bits), Expect = 3.1e-44, P = 3.1e-44
 Identities = 92/199 (46%), Positives = 136/199 (68%)

Query:   147 ILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAG 206
             I+P +  + ++ +R+HR E     +MV+GVPNVGKSS+INALR +++KKGKA  VG + G
Sbjct:    50 IVPLVSKLIESTSRFHREEERCYCLMVIGVPNVGKSSLINALRRTYLKKGKASKVGAEPG 109

Query:   207 VTRSVMSQVKISEKPLIYILDTPGISLPRIDNLECGMRLAACATLQDHLVGEINIADYIL 266
             +T++V++++++ E+P+I++LDTPG+  PRI+N+E GM+LA C T+ DHLVGE  IAD++L
Sbjct:   110 ITKAVLTKIQVCERPIIHLLDTPGVLPPRIENIETGMKLALCGTVLDHLVGEDVIADFLL 169

Query:   267 FYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIKKKWFKRAFDVSS--NSVRMFPDTGEV 324
             F LNR   + YV+ ++L+EP DDI  +L   A+K    +R   ++   N     PD    
Sbjct:   170 FSLNRLERFSYVEKYSLEEPCDDIQHVLKCIAVKLGKTRRVKAITGVGNITVQLPDYSAA 229

Query:   325 ARIFIEHFRKGSFGSVMLD 343
             A  FI  FRKG  G VMLD
Sbjct:   230 AYDFIRAFRKGELGKVMLD 248

GO:0005525 "GTP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IBA

GO:0042254 "ribosome biogenesis" evidence=IBA

GO:0006184 "GTP catabolic process" evidence=IBA

GO:0003924 "GTPase activity" evidence=IBA

MGI|MGI:2685015 Mtg1 "mitochondrial GTPase 1 homolog (S. cerevisiae)" [Mus musculus (taxid:10090)]

 Score = 461 (167.3 bits), Expect = 1.0e-43, P = 1.0e-43
 Identities = 96/228 (42%), Positives = 140/228 (61%)

Query:   122 VPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGK 181
             V  + +  + N L ++ +K      I+P +  +     RYHR E     +MVVGVPNVGK
Sbjct:    96 VQRLEEKGLSNVLFTNCVKDENIKQIVPKVMELIRCSYRYHRAETPEYCIMVVGVPNVGK 155

Query:   182 SSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLEC 241
             SS+IN+LR  H++ GKA  VG + G+TR+V S++++ E+PL+++LDTPG+  PRI+++E 
Sbjct:   156 SSLINSLRRQHLRTGKAARVGGEPGITRAVTSRIQVCERPLVFLLDTPGVLAPRIESVET 215

Query:   242 GMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIK- 300
             G++LA C T+ DHLVGE  +ADY+L+ LNR G + YV  + L    D I  +L   AIK 
Sbjct:   216 GLKLALCGTVLDHLVGEETMADYLLYTLNRHGLFGYVQHYALASACDQIEWVLKNVAIKL 275

Query:   301 KKWFKRAFDVSSNSVRMF-PDTGEVARIFIEHFRKGSFGSVMLDRDFL 347
             +K  K      + +V +  PD    AR F+  FR G  G VMLDRD +
Sbjct:   276 RKTRKVKVLTGTGNVNVIQPDYAMAARDFLRTFRSGLLGQVMLDRDII 323

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003924 "GTPase activity" evidence=IBA

GO:0005525 "GTP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0006184 "GTP catabolic process" evidence=IBA

GO:0042254 "ribosome biogenesis" evidence=IBA

UNIPROTKB|E7EVK2 MTG1 "Mitochondrial GTPase 1" [Homo sapiens (taxid:9606)]

 Score = 268 (99.4 bits), Expect = 1.2e-43, Sum P(2) = 1.2e-43
 Identities = 55/134 (41%), Positives = 85/134 (63%)

Query:   216 KISEKPLIYILDTPGISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNY 275
             ++SE+PL+++LDTPG+  PRI+++E G++LA C T+ DHLVGE  +ADY+L+ LN+   +
Sbjct:   140 EVSERPLMFLLDTPGVLAPRIESVETGLKLALCGTVLDHLVGEETMADYLLYTLNKHQRF 199

Query:   276 RYVDFFNLDEPSDDIVMLLAKAAIKK-KWFKRAFDVSSNSVRMF-PDTGEVARIFIEHFR 333
              YV  + L    D++  +L   A+K  K  K      + +V +  P+    AR F++ FR
Sbjct:   200 GYVQHYGLGSACDNVERVLKSVAVKLGKTQKVKVLTGTGNVNIIQPNYPAAARDFLQTFR 259

Query:   334 KGSFGSVMLDRDFL 347
             +G  GSVMLD D L
Sbjct:   260 RGLLGSVMLDLDVL 273

GO:0005525 "GTP binding" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

UNIPROTKB|Q9BT17 MTG1 "Mitochondrial GTPase 1" [Homo sapiens (taxid:9606)]

 Score = 459 (166.6 bits), Expect = 1.7e-43, P = 1.7e-43
 Identities = 92/218 (42%), Positives = 140/218 (64%)

Query:   132 NALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIINALRSS 191
             N + ++ +K      I+P +  +     RYHR E     +MV+GVPNVGKSS+IN+LR  
Sbjct:   107 NVIFTNCVKDENVKQIIPMVTELIGRSHRYHRKENLEYCIMVIGVPNVGKSSLINSLRRQ 166

Query:   192 HMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLECGMRLAACATL 251
             H++KGKA  VG + G+TR+VMS++++SE+PL+++LDTPG+  PRI+++E G++LA C T+
Sbjct:   167 HLRKGKATRVGGEPGITRAVMSKIQVSERPLMFLLDTPGVLAPRIESVETGLKLALCGTV 226

Query:   252 QDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIKK-KWFKRAFDV 310
              DHLVGE  +ADY+L+ LN+   + YV  + L    D++  +L   A+K  K  K     
Sbjct:   227 LDHLVGEETMADYLLYTLNKHQRFGYVQHYGLGSACDNVERVLKSVAVKLGKTQKVKVLT 286

Query:   311 SSNSVRMF-PDTGEVARIFIEHFRKGSFGSVMLDRDFL 347
              + +V +  P+    AR F++ FR+G  GSVMLD D L
Sbjct:   287 GTGNVNIIQPNYPAAARDFLQTFRRGLLGSVMLDLDVL 324

GO:0005525 "GTP binding" evidence=IEA

GO:0003924 "GTPase activity" evidence=IBA

GO:0042254 "ribosome biogenesis" evidence=IBA

GO:0006184 "GTP catabolic process" evidence=IBA

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

UNIPROTKB|E9PI62 MTG1 "Mitochondrial GTPase 1" [Homo sapiens (taxid:9606)]

 Score = 459 (166.6 bits), Expect = 1.7e-43, P = 1.7e-43
 Identities = 92/218 (42%), Positives = 140/218 (64%)

Query:   132 NALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIINALRSS 191
             N + ++ +K      I+P +  +     RYHR E     +MV+GVPNVGKSS+IN+LR  
Sbjct:   112 NVIFTNCVKDENVKQIIPMVTELIGRSHRYHRKENLEYCIMVIGVPNVGKSSLINSLRRQ 171

Query:   192 HMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLECGMRLAACATL 251
             H++KGKA  VG + G+TR+VMS++++SE+PL+++LDTPG+  PRI+++E G++LA C T+
Sbjct:   172 HLRKGKATRVGGEPGITRAVMSKIQVSERPLMFLLDTPGVLAPRIESVETGLKLALCGTV 231

Query:   252 QDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIKK-KWFKRAFDV 310
              DHLVGE  +ADY+L+ LN+   + YV  + L    D++  +L   A+K  K  K     
Sbjct:   232 LDHLVGEETMADYLLYTLNKHQRFGYVQHYGLGSACDNVERVLKSVAVKLGKTQKVKVLT 291

Query:   311 SSNSVRMF-PDTGEVARIFIEHFRKGSFGSVMLDRDFL 347
              + +V +  P+    AR F++ FR+G  GSVMLD D L
Sbjct:   292 GTGNVNIIQPNYPAAARDFLQTFRRGLLGSVMLDLDVL 329

GO:0005525 "GTP binding" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

RGD|6497155 LOC100910751 "mitochondrial GTPase 1-like" [Rattus norvegicus (taxid:10116)]

 Score = 453 (164.5 bits), Expect = 7.3e-43, P = 7.3e-43
 Identities = 96/228 (42%), Positives = 140/228 (61%)

Query:   122 VPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGK 181
             V ++ +  + N + ++ +K      I+P +  +     RYHR E     +MVVGVPNVGK
Sbjct:    96 VQHLEEKGLRNVIFTNCIKDENIKQIIPKVTELIGCSYRYHRAENPEYCIMVVGVPNVGK 155

Query:   182 SSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLEC 241
             SS+IN+LR  H++ GKA  VG + G+TR+V S++++ E+PL+++LDTPG+  PRI ++E 
Sbjct:   156 SSLINSLRRQHLRTGKAARVGGEPGITRAVTSRIQVCERPLMFLLDTPGVLAPRIQSVET 215

Query:   242 GMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIKK 301
             G++LA C T+ DHLVGE  +ADY+L+ LNR G + YV  + L   SD I  +L   AIK 
Sbjct:   216 GLKLALCGTVLDHLVGEETMADYLLYTLNRHGLFGYVQHYALASASDHIEWVLKNVAIKL 275

Query:   302 -KWFKRAFDVSSNSVRMF-PDTGEVARIFIEHFRKGSFGSVMLDRDFL 347
              K  K      + +V +  PD    AR F+  FR G  G VMLDRD +
Sbjct:   276 GKTRKVKVLTGTGNVNVIQPDYAIAARDFLRTFRSGRLGQVMLDRDII 323

GO:0005525 "GTP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

UNIPROTKB|J9NSS4 LOC607676 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 446 (162.1 bits), Expect = 4.0e-42, P = 4.0e-42
 Identities = 89/203 (43%), Positives = 131/203 (64%)

Query:   147 ILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAG 206
             ++P ++ + ++  RYHR E      +V+G+PNV KSS+INALR  H++KGKA  VG + G
Sbjct:     2 VIPMVRGLVESSHRYHRQENLEYCALVIGIPNVCKSSLINALRRQHLRKGKATRVGGEPG 61

Query:   207 VTRSVMSQVKISEKPLIYILDTPGISLPRIDNLECGMRLAACATLQDHLVGEINIADYIL 266
             +TR+VMS++++ E+PL+++LDTPG+  PRI ++E G++LA C T+ DHLVGE  +ADY+L
Sbjct:    62 ITRAVMSRIQVCERPLMFLLDTPGVLAPRIQSVEMGLKLALCGTVLDHLVGEETLADYLL 121

Query:   267 FYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIKK-KWFKRAFDVSSNSVRMF-PDTGEV 324
             + LNR   + YV  + LD   DDI  +L   A++  K  K      +  V +  P+    
Sbjct:   122 YTLNRHQLFGYVQHYGLDGACDDITRVLKHVAVRLGKTHKVKVLTGTGDVNVIQPNYPAA 181

Query:   325 ARIFIEHFRKGSFGSVMLDRDFL 347
             AR F+  FR G  G VMLDRD L
Sbjct:   182 ARDFLRTFRHGLLGPVMLDRDVL 204

GO:0005525 "GTP binding" evidence=IEA

FB|FBgn0039020 CG17141 [Drosophila melanogaster (taxid:7227)]

 Score = 405 (147.6 bits), Expect = 8.9e-38, P = 8.9e-38
 Identities = 86/198 (43%), Positives = 120/198 (60%)

Query:   147 ILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAG 206
             ILP    +    +R++RT+     +M++GVPNVGKSS+IN LR+ H+KK  A  VG +AG
Sbjct:   121 ILPLATRLVSESSRFNRTQAAEHNLMIIGVPNVGKSSVINVLRNVHLKKKSAARVGAEAG 180

Query:   207 VTRSVMSQVKISEKPLIYILDTPGISLPRIDNLECGMRLAACATLQDHLVGEINIADYIL 266
             +TRSV  ++KI E P +Y++DTPGI  P I + E GM+LA    L DH+VGE  IADY+L
Sbjct:   181 ITRSVGERIKIQENPPVYMIDTPGILQPSIKDDEMGMKLALVGCLPDHIVGEDLIADYLL 240

Query:   267 FYLNRTGNYRYVDFFNLDE-PSDDIVMLLAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVA 325
             ++LN    Y YV+   L   PSDDI  +LA+ A +++ F +        V +  +    A
Sbjct:   241 YWLNSHRKYDYVEMLKLSSGPSDDISAVLAEYAHREELFHKVKQYDGR-VEVMTNLLAAA 299

Query:   326 RIFIEHFRKGSFGSVMLD 343
             R FI  FR G  G + LD
Sbjct:   300 RKFIHFFRSGQLGHMNLD 317

GO:0005525 "GTP binding" evidence=IEA

GO:0003924 "GTPase activity" evidence=IBA

GO:0005739 "mitochondrion" evidence=IBA

GO:0042254 "ribosome biogenesis" evidence=IBA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8R2R6	MTG1_MOUSE	No assigned EC number	0.3724	0.8181	0.8834	yes	N/A
Q9BT17	MTG1_HUMAN	No assigned EC number	0.3581	0.8181	0.8622	yes	N/A
O74776	MTG1_SCHPO	No assigned EC number	0.2645	0.8096	0.8689	yes	N/A
Q4PS77	MTG1_BOVIN	No assigned EC number	0.3657	0.8210	0.8704	yes	N/A
Q29AU5	MTG1_DROPS	No assigned EC number	0.3583	0.8181	0.9	yes	N/A
Q9VCU5	MTG1_DROME	No assigned EC number	0.3381	0.8181	0.8916	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	352
TIGR03596	276	TIGR03596, GTPase_YlqF, ribosome biogenesis GTP-bi	4e-47
PRK09563	287	PRK09563, rbgA, GTPase YlqF; Reviewed	4e-42
cd01856	171	cd01856, YlqF, Circularly permuted YlqF GTPase	3e-38
COG1161	322	COG1161, COG1161, Predicted GTPases [General funct	2e-25
cd04178	171	cd04178, Nucleostemin_like, A circularly permuted	1e-14
cd01859	157	cd01859, MJ1464, An uncharacterized, circularly pe	7e-14
cd04178	171	cd04178, Nucleostemin_like, A circularly permuted	3e-12
pfam01926	117	pfam01926, MMR_HSR1, 50S ribosome-binding GTPase	6e-12
cd01859	157	cd01859, MJ1464, An uncharacterized, circularly pe	1e-11
cd01849	146	cd01849, YlqF_related_GTPase, Circularly permuted	1e-11
cd01858	157	cd01858, NGP_1, A novel nucleolar GTP-binding prot	4e-11
cd01855	191	cd01855, YqeH, Circularly permuted YqeH GTPase	1e-08
cd01849	146	cd01849, YlqF_related_GTPase, Circularly permuted	4e-07
cd01855	191	cd01855, YqeH, Circularly permuted YqeH GTPase	4e-07
COG1159	298	COG1159, Era, GTPase [General function prediction	8e-07
cd00880	161	cd00880, Era_like, E	9e-07
TIGR03597	360	TIGR03597, GTPase_YqeH, ribosome biogenesis GTPase	3e-06
cd01857	140	cd01857, HSR1_MMR1, A circularly permuted subfamil	4e-06
TIGR03597	360	TIGR03597, GTPase_YqeH, ribosome biogenesis GTPase	5e-06
cd01854	211	cd01854, YjeQ_EngC, Ribosomal interacting GTPase Y	9e-06
COG0370	653	COG0370, FeoB, Fe2+ transport system protein B [In	9e-06
cd01894	157	cd01894, EngA1, EngA1 GTPase contains the first do	1e-05
cd01879	159	cd01879, FeoB, Ferrous iron transport protein B (F	2e-05
cd01895	174	cd01895, EngA2, EngA2 GTPase contains the second d	2e-05
TIGR03594	429	TIGR03594, GTPase_EngA, ribosome-associated GTPase	3e-05
cd00882	161	cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like s	3e-05
COG0486	454	COG0486, ThdF, Predicted GTPase [General function	3e-05
PRK00093	435	PRK00093, PRK00093, GTP-binding protein Der; Revie	3e-05
cd01857	140	cd01857, HSR1_MMR1, A circularly permuted subfamil	4e-05
cd04163	168	cd04163, Era, E	4e-05
PRK00093	435	PRK00093, PRK00093, GTP-binding protein Der; Revie	8e-05
pfam01926	117	pfam01926, MMR_HSR1, 50S ribosome-binding GTPase	1e-04
TIGR03594	429	TIGR03594, GTPase_EngA, ribosome-associated GTPase	1e-04
COG1160	444	COG1160, COG1160, Predicted GTPases [General funct	1e-04
TIGR00436	270	TIGR00436, era, GTP-binding protein Era	1e-04
TIGR03594	429	TIGR03594, GTPase_EngA, ribosome-associated GTPase	2e-04
PRK00093	435	PRK00093, PRK00093, GTP-binding protein Der; Revie	3e-04
COG1160	444	COG1160, COG1160, Predicted GTPases [General funct	3e-04
pfam02421	190	pfam02421, FeoB_N, Ferrous iron transport protein	4e-04
PRK00089	292	PRK00089, era, GTPase Era; Reviewed	5e-04
TIGR00437	591	TIGR00437, feoB, ferrous iron transporter FeoB	6e-04
TIGR00450	442	TIGR00450, mnmE_trmE_thdF, tRNA modification GTPas	7e-04
PRK13796	365	PRK13796, PRK13796, GTPase YqeH; Provisional	8e-04
PRK15494	339	PRK15494, era, GTPase Era; Provisional	0.001
TIGR00450	442	TIGR00450, mnmE_trmE_thdF, tRNA modification GTPas	0.002
PRK03003	472	PRK03003, PRK03003, GTP-binding protein Der; Revie	0.002
PRK05291	449	PRK05291, trmE, tRNA modification GTPase TrmE; Rev	0.002
PRK00098	298	PRK00098, PRK00098, GTPase RsgA; Reviewed	0.002
PRK09518	712	PRK09518, PRK09518, bifunctional cytidylate kinase	0.002
cd01876	170	cd01876, YihA_EngB, YihA (EngB) GTPase family	0.003
TIGR00231	162	TIGR00231, small_GTP, small GTP-binding protein do	0.004
PRK04213	201	PRK04213, PRK04213, GTP-binding protein; Provision	0.004

>gnl|CDD|213833 TIGR03596, GTPase_YlqF, ribosome biogenesis GTP-binding protein YlqF

 Score =  160 bits (408), Expect = 4e-47
 Identities = 89/343 (25%), Positives = 149/343 (43%), Gaps = 74/343 (21%)

Query: 1   MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
           M +  ++I++ LK VD+VIEV D+R+P + RN ++ +   N +P ++VLNK DL +    
Sbjct: 8   MAKARREIKEKLKLVDVVIEVLDARIPLSSRNPMIDEIRGN-KPRLIVLNKADLADPAVT 66

Query: 61  SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
               +   ++     + +  N +    KGV+KI+                          
Sbjct: 67  KQWLKYFEEKGI---KALAINAKKG--KGVKKIIK------------------------- 96

Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
                        L     +K KA  +L                       M+VG+PNVG
Sbjct: 97  ---------AAKKLLKEKNEKLKAKGLLNR-----------------PIRAMIVGIPNVG 130

Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
           KS++IN      +   K   VG + GVT+     +K+S+   + +LDTPGI  P+ ++ E
Sbjct: 131 KSTLIN-----RLAGKKVAKVGNRPGVTKG-QQWIKLSDG--LELLDTPGILWPKFEDQE 182

Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIK 300
            G++LAA   ++D  +   ++A ++L YL         + + LDE  +DIV LL   A K
Sbjct: 183 VGLKLAATGAIKDEALDLEDVALFLLEYLLEHYPELLKERYKLDELPEDIVELLEAIAKK 242

Query: 301 KKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
           +    +  ++         D    A I +  FRKG  G + L+
Sbjct: 243 RGCLLKGGEL---------DLDRAAEILLNDFRKGKLGRITLE 276

Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members [Protein synthesis, Other]. Length = 276

>gnl|CDD|236570 PRK09563, rbgA, GTPase YlqF; Reviewed

 Score =  148 bits (375), Expect = 4e-42
 Identities = 84/344 (24%), Positives = 152/344 (44%), Gaps = 74/344 (21%)

Query: 1   MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
           M +  ++I+++LK VD+VIEV D+R+P +  N ++ + + N +P +L+LNK DL + +  
Sbjct: 11  MAKARREIKENLKLVDVVIEVLDARIPLSSENPMIDKIIGN-KPRLLILNKSDLADPEVT 69

Query: 61  SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
               E   ++     + +  N +    +GV+KIL   + +                    
Sbjct: 70  KKWIEYFEEQG---IKALAINAKKG--QGVKKILKAAKKLLKEK---------------- 108

Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
                      N  R +   + +A+                 R        M++G+PNVG
Sbjct: 109 -----------NERRKAKGMRPRAI-----------------RA-------MIIGIPNVG 133

Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
           KS++IN L      K K    G + GVT++    +K+ +   + +LDTPGI  P++++ E
Sbjct: 134 KSTLINRL----AGK-KIAKTGNRPGVTKA-QQWIKLGKG--LELLDTPGILWPKLEDQE 185

Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIK 300
            G++LA    ++D  +    +A + L YL++    R  + + LDE  +DI+ LL   A  
Sbjct: 186 VGLKLALTGAIKDEALDLEEVAIFALEYLSKHYPERLKERYKLDELPEDILELLEAIAR- 244

Query: 301 KKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDR 344
               KR        +    D    + + +  FR G  G + L+ 
Sbjct: 245 ----KRGALRKGGEI----DYERASELLLNEFRNGKLGKITLET 280

Length = 287

>gnl|CDD|206749 cd01856, YlqF, Circularly permuted YlqF GTPase

 Score =  133 bits (338), Expect = 3e-38
 Identities = 67/231 (29%), Positives = 98/231 (42%), Gaps = 66/231 (28%)

Query: 1   MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
           M + L+ I++ LK VD+VIEV D+R+P + RN  L + + N +P ++VLNK DL +    
Sbjct: 6   MAKALRQIKEKLKLVDVVIEVRDARIPLSSRNPDLDKILGN-KPRLIVLNKADLADPAKT 64

Query: 61  SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
               +  + +      V+F N +N   KGV+K+L   +                      
Sbjct: 65  KKWLKYFKSQGEP---VLFVNAKNG--KGVKKLLKKAK---------------------- 97

Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
                    ++        K     P+                        MVVG+PNVG
Sbjct: 98  --------KLLKENEKLKAKGLLPRPL----------------------RAMVVGIPNVG 127

Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGI 231
           KS++IN LR     K  A  VG K GVTR     ++I     I +LDTPGI
Sbjct: 128 KSTLINRLR----GKKVAK-VGNKPGVTRGQQ-WIRIGPN--IELLDTPGI 170

Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in all eukaryotes as well as a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga). Length = 171

>gnl|CDD|224083 COG1161, COG1161, Predicted GTPases [General function prediction only]

 Score =  104 bits (261), Expect = 2e-25
 Identities = 84/350 (24%), Positives = 138/350 (39%), Gaps = 79/350 (22%)

Query: 1   MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
           M +  + +++ LK+VD+V+EV D+R P   RN  L++ V   +P +LVLNK DL   +  
Sbjct: 21  MKKAKRQLKEVLKSVDVVVEVVDARDPLGTRNPELERIV-KEKPKLLVLNKADLAPKEVT 79

Query: 61  SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
              ++  +KE+    + IF + ++    G +KI   L+ +S+                  
Sbjct: 80  KKWKKYFKKEEG--IKPIFVSAKSRQ--GGKKIRKALEKLSEE----------------- 118

Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
                     I  L+   + K K                           V VVG PNVG
Sbjct: 119 ---------KIKRLKKKGLLKRK-------------------------IRVGVVGYPNVG 144

Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
           KS++IN L        K      + G T+  +  +K+ +   IY+LDTPGI  P+ D+ E
Sbjct: 145 KSTLINRLLGK-----KVAKTSNRPGTTKG-IQWIKLDDG--IYLLDTPGIIPPKFDDDE 196

Query: 241 -CGMRLAACATLQDHLVGEIN-IADYILFYLNRTGNYR----YVDFFNLDEPSDDIVMLL 294
              ++LA    ++D  V   + +A+ +L  L    +Y        + +      D    L
Sbjct: 197 LVLLKLAPKGEIKD-PVLPADEVAERLLGGLLIDEHYGEKLNITRYESNPIHRTDPEEFL 255

Query: 295 AKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDR 344
              A K+ W               PD    A   ++  R G  G   L+ 
Sbjct: 256 ELIAKKRGWLLLKGG--------EPDLERAAETILKDIRNGKLGWFSLEE 297

Length = 322

>gnl|CDD|206753 cd04178, Nucleostemin_like, A circularly permuted subfamily of the Ras GTPases

 Score = 70.3 bits (173), Expect = 1e-14
 Identities = 29/63 (46%), Positives = 41/63 (65%), Gaps = 8/63 (12%)

Query: 169 TTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDT 228
            TV VVG PNVGKSS+IN+L     K+ +A  VG   GVT+S M +V + +   + +LD+
Sbjct: 117 ITVGVVGYPNVGKSSVINSL-----KRSRACNVGATPGVTKS-MQEVHLDKH--VKLLDS 168

Query: 229 PGI 231
           PG+
Sbjct: 169 PGV 171

Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the protein. Length = 171

>gnl|CDD|206752 cd01859, MJ1464, An uncharacterized, circularly permuted subfamily of the Ras GTPases

 Score = 68.1 bits (167), Expect = 7e-14
 Identities = 38/135 (28%), Positives = 69/135 (51%), Gaps = 14/135 (10%)

Query: 5   LKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNI-RPMVLVLNKRDLINSKHESLI 63
            + + + +K  D+V+EV D+R P   R+  L++    + + +++VLNK DL+  +    +
Sbjct: 2   KRLVRRIIKEADVVLEVVDARDPELTRSRKLERMALELGKKLIIVLNKADLV-PREV--L 58

Query: 64  EEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVVGVP 123
           E+     +S    V++ + R     G + +  T++ ++         +     V VVG P
Sbjct: 59  EKWKEVFESEGLPVVYVSARER--LGTRILRRTIKELA--------IDGKPVIVGVVGYP 108

Query: 124 NVGKSSIINALRSSH 138
            VGKSSIINAL+  H
Sbjct: 109 KVGKSSIINALKGRH 123

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus. Length = 157

>gnl|CDD|206753 cd04178, Nucleostemin_like, A circularly permuted subfamily of the Ras GTPases

 Score = 63.7 bits (156), Expect = 3e-12
 Identities = 45/161 (27%), Positives = 70/161 (43%), Gaps = 43/161 (26%)

Query: 16  DIVIEVHDSRMPFTGRNHLLQQSVQNIRP---MVLVLNKRDLI----------------- 55
           D+++EV D+R P   R   ++++V  + P   +VLVLNK DL+                 
Sbjct: 1   DVILEVLDARDPLGCRCPQVERAVLVLGPNKKLVLVLNKIDLVPKENVEKWLKYLRNEFP 60

Query: 56  ----------NSKHESLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMT 105
                       K+ S   +KV+     +         +  C G   +L  L++ + N  
Sbjct: 61  TVAFKASTQQQKKNLSRKSKKVKASDDLL--------SSSACLGADALLKLLKNYARNKG 112

Query: 106 RYHRTEVYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVP 146
              +T +   TV VVG PNVGKSS+IN+L+ S      A P
Sbjct: 113 --IKTSI---TVGVVGYPNVGKSSVINSLKRSRACNVGATP 148

Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the protein. Length = 171

>gnl|CDD|216791 pfam01926, MMR_HSR1, 50S ribosome-binding GTPase

 Score = 61.5 bits (150), Expect = 6e-12
 Identities = 28/98 (28%), Positives = 41/98 (41%), Gaps = 14/98 (14%)

Query: 170 TVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTP 229
            V +VG PNVGKS++INAL        K   V    G TR  +  V    + +I ++DTP
Sbjct: 1   RVALVGRPNVGKSTLINAL-----TGAKVAIVSDYPGTTRDPILGVLGLGRQII-LVDTP 54

Query: 230 GISLPRIDNLECGMRLAACATLQDHLVGEINIADYILF 267
           G+     +             +++        AD IL 
Sbjct: 55  GLIEGASEGKGVEGFNRFLEAIRE--------ADLILL 84

The full-length GTPase protein is required for the complete activity of the protein of interacting with the 50S ribosome and binding of both adenine and guanine nucleotides, with a preference for guanine nucleotide. Length = 117

>gnl|CDD|206752 cd01859, MJ1464, An uncharacterized, circularly permuted subfamily of the Ras GTPases

 Score = 61.6 bits (150), Expect = 1e-11
 Identities = 28/62 (45%), Positives = 36/62 (58%), Gaps = 5/62 (8%)

Query: 170 TVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTP 229
            V VVG P VGKSSIINAL+  H       P+    G T+  +  V+I  K  IY++DTP
Sbjct: 101 IVGVVGYPKVGKSSIINALKGRH--SASTSPIPGSPGYTKG-IQLVRIDSK--IYLIDTP 155

Query: 230 GI 231
           G+
Sbjct: 156 GV 157

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus. Length = 157

>gnl|CDD|206746 cd01849, YlqF_related_GTPase, Circularly permuted YlqF-related GTPases

 Score = 61.2 bits (149), Expect = 1e-11
 Identities = 41/139 (29%), Positives = 63/139 (45%), Gaps = 12/139 (8%)

Query: 16  DIVIEVHDSRMPFTGRN-HLLQQSVQNIRPMVLVLNKRDLINSKHESLIEEKVRKEQSHI 74
           D+V+EV D+R P + RN  +     +  + +++VLNK DL+  K    +  K   E S +
Sbjct: 1   DVVVEVVDARDPLSSRNPDIEVLINEKNKKLIMVLNKADLV-PKE---VLRKWVAELSEL 56

Query: 75  SEVIFTNCRNPNCKGVQKILPT-LQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIINA 133
                      N +G+ K+     +       +          V VVG+PNVGKSS INA
Sbjct: 57  YGTKTFFISATNGQGILKLKAEITKQKLKLKYKKG------IRVGVVGLPNVGKSSFINA 110

Query: 134 LRSSHMKKGKAVPILPTLQ 152
           L +    K  ++P    LQ
Sbjct: 111 LLNKFKLKVGSIPGTTKLQ 129

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases. Length = 146

>gnl|CDD|206751 cd01858, NGP_1, A novel nucleolar GTP-binding protein, circularly permuted subfamily of the Ras GTPases

 Score = 60.4 bits (147), Expect = 4e-11
 Identities = 55/222 (24%), Positives = 87/222 (39%), Gaps = 80/222 (36%)

Query: 16  DIVIEVHDSRMPFTGRNHLLQQSVQNIRP---MVLVLNKRDLINSKHESLIEEKVRKEQS 72
           D++I+V D+R P   R   +++ ++  +P   ++ VLNK DL+ +          ++   
Sbjct: 10  DVIIQVLDARDPMGTRCKHVEKYLRKEKPHKHLIFVLNKCDLVPTW-------VTKRWVK 62

Query: 73  HISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIIN 132
            +S                K  PTL     ++T                    GK ++IN
Sbjct: 63  VLS----------------KEYPTLAF-HASITN-----------------PFGKGALIN 88

Query: 133 ALR---SSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIINALR 189
            LR     H  K          + IS               V  +G PNVGKSS+IN LR
Sbjct: 89  LLRQFAKLHSDK----------KQIS---------------VGFIGYPNVGKSSVINTLR 123

Query: 190 SSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGI 231
           S      K   V P  G T+ V   + + ++  IY++D PG+
Sbjct: 124 SK-----KVCKVAPIPGETK-VWQYITLMKR--IYLIDCPGV 157

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus. Length = 157

>gnl|CDD|206748 cd01855, YqeH, Circularly permuted YqeH GTPase

 Score = 53.4 bits (129), Expect = 1e-08
 Identities = 34/150 (22%), Positives = 63/150 (42%), Gaps = 31/150 (20%)

Query: 43  RPMVLVLNKRDLIN-SKHESLIEEKVRKE----QSHISEVIFTNCRNPNCKGVQKILPTL 97
           +P++LV NK DL+      + +++ V+K        I +VI  + +     GV+++    
Sbjct: 61  KPVILVGNKIDLLPKDVKPNRLKQWVKKRLKIGGLKIKDVILVSAKKGW--GVEEL---- 114

Query: 98  QHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIINAL--RSSHMKKGKAVPILPTLQHIS 155
                 +    +   Y   V VVG  NVGKS++INAL   +    + +A+    T+  I 
Sbjct: 115 ------IEEIKKLAKYRGDVYVVGATNVGKSTLINALLKSNGGKVQAQALVQRLTVSPIP 168

Query: 156 DNMTRYHRTEVYNTTVMVVGVPNVGKSSII 185
                        TT+ ++ +P      + 
Sbjct: 169 ------------GTTLGLIKIPLGEGKKLY 186

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. Length = 191

>gnl|CDD|206746 cd01849, YlqF_related_GTPase, Circularly permuted YlqF-related GTPases

 Score = 48.5 bits (116), Expect = 4e-07
 Identities = 28/64 (43%), Positives = 35/64 (54%), Gaps = 8/64 (12%)

Query: 168 NTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILD 227
              V VVG+PNVGKSS INAL          + VG   G T+     VK+ ++  IY+ D
Sbjct: 91  GIRVGVVGLPNVGKSSFINAL-----LNKFKLKVGSIPGTTKL-QQDVKLDKE--IYLYD 142

Query: 228 TPGI 231
           TPGI
Sbjct: 143 TPGI 146

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases. Length = 146

>gnl|CDD|206748 cd01855, YqeH, Circularly permuted YqeH GTPase

 Score = 49.2 bits (118), Expect = 4e-07
 Identities = 26/80 (32%), Positives = 37/80 (46%), Gaps = 9/80 (11%)

Query: 158 MTRYHRTEVYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGV------TRSV 211
           +    +   Y   V VVG  NVGKS++INAL  S+  K +A  +  +  V      T  +
Sbjct: 115 IEEIKKLAKYRGDVYVVGATNVGKSTLINALLKSNGGKVQAQALVQRLTVSPIPGTTLGL 174

Query: 212 MSQVKISEKPLIYILDTPGI 231
              +KI       + DTPGI
Sbjct: 175 ---IKIPLGEGKKLYDTPGI 191

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. Length = 191

>gnl|CDD|224081 COG1159, Era, GTPase [General function prediction only]

 Score = 49.5 bits (119), Expect = 8e-07
 Identities = 34/97 (35%), Positives = 50/97 (51%), Gaps = 14/97 (14%)

Query: 171 VMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPG 230
           V ++G PNVGKS+++NAL    + + K   V PK   TR+ +  +  ++   I  +DTPG
Sbjct: 9   VAIIGRPNVGKSTLLNAL----VGQ-KISIVSPKPQTTRNRIRGIVTTDNAQIIFVDTPG 63

Query: 231 ISLPRIDNLECGMRLAACATLQDHLVGEINIADYILF 267
           I  P+   L   M  AA + L+D         D ILF
Sbjct: 64  IHKPK-HALGELMNKAARSALKD--------VDLILF 91

Length = 298

>gnl|CDD|206646 cd00880, Era_like, E

 Score = 48.0 bits (115), Expect = 9e-07
 Identities = 20/60 (33%), Positives = 33/60 (55%), Gaps = 6/60 (10%)

Query: 173 VVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQ-VKISEKPLIYILDTPGI 231
           + G PNVGKSS++NAL   ++       V P  G TR  + +  ++     + ++DTPG+
Sbjct: 2   IFGRPNVGKSSLLNALLGQNVGI-----VSPIPGTTRDPVRKEWELLPLGPVVLIDTPGL 56

coli Ras-like protein (Era)-like GTPase. The Era (E. coli Ras-like protein)-like family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngB), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Length = 161

>gnl|CDD|213834 TIGR03597, GTPase_YqeH, ribosome biogenesis GTPase YqeH

 Score = 48.0 bits (115), Expect = 3e-06
 Identities = 25/64 (39%), Positives = 31/64 (48%), Gaps = 9/64 (14%)

Query: 171 VMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPL---IYILD 227
           V VVGV NVGKSS+IN L   +      +   P  G T      + + E PL     + D
Sbjct: 157 VYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTT------LDLIEIPLDDGHSLYD 210

Query: 228 TPGI 231
           TPGI
Sbjct: 211 TPGI 214

This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli [Protein synthesis, Other]. Length = 360

>gnl|CDD|206750 cd01857, HSR1_MMR1, A circularly permuted subfamily of the Ras GTPases

 Score = 45.7 bits (109), Expect = 4e-06
 Identities = 36/130 (27%), Positives = 55/130 (42%), Gaps = 45/130 (34%)

Query: 16  DIVIEVHDSRMPFTGRNHLLQQSVQNI---RPMVLVLNKRDLINSKHESLIEEKVRKE-- 70
           D+V+++ D+R P   R   L++ V+ +   +  VL+LNK DL+         E+ RK   
Sbjct: 13  DVVVQIVDARNPLFFRCPDLEKYVKEVDPSKENVLLLNKADLV--------TEEQRKAWA 64

Query: 71  ---QSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGK 127
              +     V+F +  N                               T+ +VG PNVGK
Sbjct: 65  RYFKKEGIVVLFFSALNEA-----------------------------TIGLVGYPNVGK 95

Query: 128 SSIINALRSS 137
           SS+INAL  S
Sbjct: 96  SSLINALVGS 105

Human HSR1 is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N-terminus. Length = 140

>gnl|CDD|213834 TIGR03597, GTPase_YqeH, ribosome biogenesis GTPase YqeH

 Score = 47.2 bits (113), Expect = 5e-06
 Identities = 30/96 (31%), Positives = 49/96 (51%), Gaps = 18/96 (18%)

Query: 44  PMVLVLNKRDLIN-SKHESLIEEKVRKEQSHIS----EVIFTNCRNPNCKGVQKILPTLQ 98
           P++LV NK DL+  S + S I+E ++K    +     ++I  + +  N  G+ ++L  ++
Sbjct: 92  PVLLVGNKIDLLPKSVNLSKIKEWMKKRAKELGLKPVDIILVSAKKGN--GIDELLDKIK 149

Query: 99  HISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIINAL 134
              +              V VVGV NVGKSS+IN L
Sbjct: 150 KARNK-----------KDVYVVGVTNVGKSSLINKL 174

This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli [Protein synthesis, Other]. Length = 360

>gnl|CDD|206747 cd01854, YjeQ_EngC, Ribosomal interacting GTPase YjeQ/EngC, a circularly permuted subfamily of the Ras GTPases

 Score = 45.9 bits (110), Expect = 9e-06
 Identities = 26/114 (22%), Positives = 48/114 (42%), Gaps = 31/114 (27%)

Query: 40  QNIRPMVLVLNKRDLINSKHESLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQH 99
             I P V+VLNK DL++   +  +EE +   +     V+  + +     G+ ++   L+ 
Sbjct: 32  SGIEP-VIVLNKADLVD---DEELEELLEIYEKLGYPVLAVSAKTGE--GLDELRELLK- 84

Query: 100 ISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIINALR----------SSHMKKGK 143
                           T ++VG   VGKS+++NAL           S  + +G+
Sbjct: 85  --------------GKTSVLVGQSGVGKSTLLNALLPELVLATGEISEKLGRGR 124

YjeQ (YloQ in Bacillus subtilis) is a ribosomal small subunit-dependent GTPase; hence also known as RsgA. YjeQ is a late-stage ribosomal biogenesis factor involved in the 30S subunit maturation, and it represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. Length = 211

>gnl|CDD|223447 COG0370, FeoB, Fe2+ transport system protein B [Inorganic ion transport and metabolism]

 Score = 47.3 bits (113), Expect = 9e-06
 Identities = 23/62 (37%), Positives = 31/62 (50%), Gaps = 6/62 (9%)

Query: 170 TVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTP 229
           TV +VG PNVGK+++ NAL  ++ K      VG   GVT          +   I I+D P
Sbjct: 5   TVALVGNPNVGKTTLFNALTGANQK------VGNWPGVTVEKKEGKLKYKGHEIEIVDLP 58

Query: 230 GI 231
           G 
Sbjct: 59  GT 60

Length = 653

>gnl|CDD|206681 cd01894, EngA1, EngA1 GTPase contains the first domain of EngA

 Score = 44.3 bits (106), Expect = 1e-05
 Identities = 30/98 (30%), Positives = 42/98 (42%), Gaps = 22/98 (22%)

Query: 174 VGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTR-SVMSQVKISEKPLIYILDTPGIS 232
           VG PNVGKS++ N L      +  A+ V    GVTR     + +   +  I ++DT GI 
Sbjct: 3   VGRPNVGKSTLFNRLT----GRRDAI-VSDTPGVTRDRKYGEAEWGGREFI-LIDTGGIE 56

Query: 233 LPRIDNLECGMR---LAACATLQDHLVGEINIADYILF 267
            P  + +   +R     A           I  AD ILF
Sbjct: 57  -PDDEGISKEIREQAEIA-----------IEEADVILF 82

This EngA1 subfamily CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability. Length = 157

>gnl|CDD|206667 cd01879, FeoB, Ferrous iron transport protein B (FeoB) family

 Score = 44.0 bits (105), Expect = 2e-05
 Identities = 25/63 (39%), Positives = 33/63 (52%), Gaps = 9/63 (14%)

Query: 173 VVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMS-QVKISEKPLIYILDTPGI 231
           +VG PNVGK+++ NAL  +  K      VG   GVT      + K+  K  I I+D PG 
Sbjct: 2   LVGNPNVGKTTLFNALTGARQK------VGNWPGVTVEKKEGEFKLGGKE-IEIVDLPGT 54

Query: 232 -SL 233
            SL
Sbjct: 55  YSL 57

Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent. Length = 159

>gnl|CDD|206682 cd01895, EngA2, EngA2 GTPase contains the second domain of EngA

 Score = 44.0 bits (105), Expect = 2e-05
 Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 7/60 (11%)

Query: 173 VVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTR-SVMSQVKISEKPLIYILDTPGI 231
           ++G PNVGKSS++NAL    + + + + V   AG TR S+    +   +    I DT GI
Sbjct: 7   IIGRPNVGKSSLLNAL----LGEERVI-VSDIAGTTRDSIDVPFEYDGQKYTLI-DTAGI 60

This EngA2 subfamily CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability. Length = 174

>gnl|CDD|234274 TIGR03594, GTPase_EngA, ribosome-associated GTPase EngA

 Score = 45.5 bits (109), Expect = 3e-05
 Identities = 23/113 (20%), Positives = 56/113 (49%), Gaps = 6/113 (5%)

Query: 10  KHLKNVDIVIEVHDSRMPFTGRN-HLLQQSVQNIRPMVLVLNKRDLI-NSKHESLIEEKV 67
           K ++  D+V+ V D+    T ++  +   +++  + +V+V+NK DL+ + K     ++++
Sbjct: 250 KAIERADVVLLVLDATEGITEQDLRIAGLALEAGKALVIVVNKWDLVKDEKTREEFKKEL 309

Query: 68  RKEQSHIS--EVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVM 118
           R++   +    ++F +      +GV K+L  +  + +N  R   T   N  + 
Sbjct: 310 RRKLPFLDFAPIVFISALTG--QGVDKLLDAIDEVYENANRRISTSKLNRVLE 360

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability [Protein synthesis, Other]. Length = 429

>gnl|CDD|206648 cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases)

 Score = 43.6 bits (103), Expect = 3e-05
 Identities = 23/61 (37%), Positives = 31/61 (50%), Gaps = 7/61 (11%)

Query: 173 VVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPL--IYILDTPG 230
           VVG   VGKSS++NAL       G+   V    G TR     VK  +K    + ++DTPG
Sbjct: 2   VVGRGGVGKSSLLNALL-----GGEVGEVSDVPGTTRDPDVYVKELDKGKVKLVLVDTPG 56

Query: 231 I 231
           +
Sbjct: 57  L 57

Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulates initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Members of the Ras superfamily are identified by the GTP binding site, which is made up of five characteristic sequence motifs, and the switch I and switch II regions. Length = 161

>gnl|CDD|223561 COG0486, ThdF, Predicted GTPase [General function prediction only]

 Score = 45.2 bits (108), Expect = 3e-05
 Identities = 24/62 (38%), Positives = 40/62 (64%), Gaps = 7/62 (11%)

Query: 171 VMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVM-SQVKISEKPLIYILDTP 229
           V+++G PNVGKSS++NAL    + + +A+ V   AG TR V+   + ++  P+  ++DT 
Sbjct: 220 VVIIGRPNVGKSSLLNAL----LGRDRAI-VTDIAGTTRDVIEEDINLNGIPVR-LVDTA 273

Query: 230 GI 231
           GI
Sbjct: 274 GI 275

Length = 454

>gnl|CDD|234628 PRK00093, PRK00093, GTP-binding protein Der; Reviewed

 Score = 45.0 bits (108), Expect = 3e-05
 Identities = 22/101 (21%), Positives = 51/101 (50%), Gaps = 5/101 (4%)

Query: 9   EKHLKNVDIVIEVHDSRMPFTGRN-HLLQQSVQNIRPMVLVLNKRDLINSKHESLIEEKV 67
            K ++  D+V+ V D+    T ++  +   +++  R +V+V+NK DL++ K     ++++
Sbjct: 250 LKAIERADVVLLVIDATEGITEQDLRIAGLALEAGRALVIVVNKWDLVDEKTMEEFKKEL 309

Query: 68  RKEQSHIS--EVIFTNCRNPNCKGVQKILPTLQHISDNMTR 106
           R+    +    ++F +      +GV K+L  +    +N  R
Sbjct: 310 RRRLPFLDYAPIVFISALTG--QGVDKLLEAIDEAYENANR 348

Length = 435

>gnl|CDD|206750 cd01857, HSR1_MMR1, A circularly permuted subfamily of the Ras GTPases

 Score = 42.6 bits (101), Expect = 4e-05
 Identities = 27/66 (40%), Positives = 35/66 (53%), Gaps = 8/66 (12%)

Query: 169 TTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDT 228
            T+ +VG PNVGKSS+INAL  S     K V V    G T+   +   I  +P I + D 
Sbjct: 83  ATIGLVGYPNVGKSSLINALVGS-----KKVSVSSTPGKTKHFQT---IFLEPGITLCDC 134

Query: 229 PGISLP 234
           PG+  P
Sbjct: 135 PGLVFP 140

Human HSR1 is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N-terminus. Length = 140

>gnl|CDD|206726 cd04163, Era, E

 Score = 43.2 bits (103), Expect = 4e-05
 Identities = 24/65 (36%), Positives = 37/65 (56%), Gaps = 5/65 (7%)

Query: 171 VMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPG 230
           V ++G PNVGKS+++NAL    + + K   V PK   TR+ +  +   +   I  +DTPG
Sbjct: 6   VAIIGRPNVGKSTLLNAL----VGQ-KISIVSPKPQTTRNRIRGIYTDDDAQIIFVDTPG 60

Query: 231 ISLPR 235
           I  P+
Sbjct: 61  IHKPK 65

coli Ras-like protein (Era) is a multifunctional GTPase. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA. Length = 168

>gnl|CDD|234628 PRK00093, PRK00093, GTP-binding protein Der; Reviewed

 Score = 43.9 bits (105), Expect = 8e-05
 Identities = 34/102 (33%), Positives = 45/102 (44%), Gaps = 22/102 (21%)

Query: 170 TVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVM-SQVKISEKPLIYILDT 228
            V +VG PNVGKS++ N L      K  A+ V    GVTR  +  + +   +  I ++DT
Sbjct: 3   VVAIVGRPNVGKSTLFNRL----TGKRDAI-VADTPGVTRDRIYGEAEWLGREFI-LIDT 56

Query: 229 PGISLPRIDNLECGMR---LAACATLQDHLVGEINIADYILF 267
            GI  P  D  E  +R     A           I  AD ILF
Sbjct: 57  GGIE-PDDDGFEKQIREQAELA-----------IEEADVILF 86

Length = 435

>gnl|CDD|216791 pfam01926, MMR_HSR1, 50S ribosome-binding GTPase

 Score = 40.7 bits (96), Expect = 1e-04
 Identities = 13/19 (68%), Positives = 16/19 (84%)

Query: 116 TVMVVGVPNVGKSSIINAL 134
            V +VG PNVGKS++INAL
Sbjct: 1   RVALVGRPNVGKSTLINAL 19

The full-length GTPase protein is required for the complete activity of the protein of interacting with the 50S ribosome and binding of both adenine and guanine nucleotides, with a preference for guanine nucleotide. Length = 117

>gnl|CDD|234274 TIGR03594, GTPase_EngA, ribosome-associated GTPase EngA

 Score = 43.6 bits (104), Expect = 1e-04
 Identities = 33/102 (32%), Positives = 43/102 (42%), Gaps = 22/102 (21%)

Query: 170 TVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMS-QVKISEKPLIYILDT 228
            V +VG PNVGKS++ N L      K  A+ V    GVTR       +   +  I ++DT
Sbjct: 1   VVAIVGRPNVGKSTLFNRL----TGKRDAI-VSDTPGVTRDRKYGDAEWGGREFI-LIDT 54

Query: 229 PGISLPRIDNLECGMR---LAACATLQDHLVGEINIADYILF 267
            GI     D L+  +R     A           I  AD ILF
Sbjct: 55  GGIEEDD-DGLDKQIREQAEIA-----------IEEADVILF 84

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability [Protein synthesis, Other]. Length = 429

>gnl|CDD|224082 COG1160, COG1160, Predicted GTPases [General function prediction only]

 Score = 43.7 bits (104), Expect = 1e-04
 Identities = 21/62 (33%), Positives = 36/62 (58%), Gaps = 7/62 (11%)

Query: 171 VMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTR-SVMSQVKISEKPLIYILDTP 229
           + ++G PNVGKSS+INA+    + + + + V   AG TR S+  + +   +    ++DT 
Sbjct: 181 IAIIGRPNVGKSSLINAI----LGEERVI-VSDIAGTTRDSIDIEFERDGRK-YVLIDTA 234

Query: 230 GI 231
           GI
Sbjct: 235 GI 236

Length = 444

>gnl|CDD|129528 TIGR00436, era, GTP-binding protein Era

 Score = 42.8 bits (101), Expect = 1e-04
 Identities = 30/105 (28%), Positives = 46/105 (43%), Gaps = 14/105 (13%)

Query: 171 VMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPG 230
           V ++G PNVGKS+++N L        K     PKA  TR+ +S +  +    I  +DTPG
Sbjct: 3   VAILGRPNVGKSTLLNQLH-----GQKISITSPKAQTTRNRISGIHTTGASQIIFIDTPG 57

Query: 231 ISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNY 275
               +       M+ A  A      +G +   D ILF ++     
Sbjct: 58  FHEKKHSLNRLMMKEARSA------IGGV---DLILFVVDSDQWN 93

Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein [Protein synthesis, Other]. Length = 270

>gnl|CDD|234274 TIGR03594, GTPase_EngA, ribosome-associated GTPase EngA

 Score = 42.4 bits (101), Expect = 2e-04
 Identities = 22/60 (36%), Positives = 34/60 (56%), Gaps = 7/60 (11%)

Query: 173 VVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTR-SVMSQVKISEKPLIYILDTPGI 231
           ++G PNVGKS+++NAL    + + + + V   AG TR S+    + + K    I DT GI
Sbjct: 177 IIGRPNVGKSTLVNAL----LGEERVI-VSDIAGTTRDSIDIPFERNGKKYTLI-DTAGI 230

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability [Protein synthesis, Other]. Length = 429

>gnl|CDD|234628 PRK00093, PRK00093, GTP-binding protein Der; Reviewed

 Score = 42.3 bits (101), Expect = 3e-04
 Identities = 23/60 (38%), Positives = 34/60 (56%), Gaps = 7/60 (11%)

Query: 173 VVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTR-SVMSQVKISEKPLIYILDTPGI 231
           ++G PNVGKSS+INAL    + + + + V   AG TR S+ +  +   +    I DT GI
Sbjct: 178 IIGRPNVGKSSLINAL----LGEERVI-VSDIAGTTRDSIDTPFERDGQKYTLI-DTAGI 231

Length = 435

>gnl|CDD|224082 COG1160, COG1160, Predicted GTPases [General function prediction only]

 Score = 41.8 bits (99), Expect = 3e-04
 Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 7/63 (11%)

Query: 170 TVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTR-SVMSQVKISEKPLIYILDT 228
            V +VG PNVGKS++ N L      +  A+ V    GVTR  +    +   +  I I DT
Sbjct: 5   VVAIVGRPNVGKSTLFNRL----TGRRIAI-VSDTPGVTRDRIYGDAEWLGREFILI-DT 58

Query: 229 PGI 231
            G+
Sbjct: 59  GGL 61

Length = 444

>gnl|CDD|217025 pfam02421, FeoB_N, Ferrous iron transport protein B

 Score = 40.5 bits (96), Expect = 4e-04
 Identities = 24/66 (36%), Positives = 31/66 (46%), Gaps = 9/66 (13%)

Query: 170 TVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMS-QVKISEKPLIYILDT 228
           T+ +VG PNVGK+++ NAL  +         VG   GVT        K      I I+D 
Sbjct: 2   TIALVGNPNVGKTTLFNALTGARQH------VGNWPGVTVEKKEGTFKYKGYE-IEIVDL 54

Query: 229 PGI-SL 233
           PG  SL
Sbjct: 55  PGTYSL 60

Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent. Length = 190

>gnl|CDD|234624 PRK00089, era, GTPase Era; Reviewed

 Score = 41.2 bits (98), Expect = 5e-04
 Identities = 34/97 (35%), Positives = 47/97 (48%), Gaps = 14/97 (14%)

Query: 171 VMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPG 230
           V +VG PNVGKS+++NAL        K   V PK   TR  +  +   +   I  +DTPG
Sbjct: 8   VAIVGRPNVGKSTLLNALVGQ-----KISIVSPKPQTTRHRIRGIVTEDDAQIIFVDTPG 62

Query: 231 ISLPRIDNLECGMRLAACATLQDHLVGEINIADYILF 267
           I  P+   L   M  AA ++L+D         D +LF
Sbjct: 63  IHKPK-RALNRAMNKAAWSSLKD--------VDLVLF 90

Length = 292

>gnl|CDD|232975 TIGR00437, feoB, ferrous iron transporter FeoB

 Score = 41.3 bits (97), Expect = 6e-04
 Identities = 21/57 (36%), Positives = 27/57 (47%), Gaps = 6/57 (10%)

Query: 175 GVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGI 231
           G PNVGKS++ NAL  ++        VG   GVT          +   I I+D PGI
Sbjct: 1   GNPNVGKSTLFNALTGANQT------VGNWPGVTVEKKEGKLGFQGEDIEIVDLPGI 51

FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum [Transport and binding proteins, Cations and iron carrying compounds]. Length = 591

>gnl|CDD|232980 TIGR00450, mnmE_trmE_thdF, tRNA modification GTPase TrmE

 Score = 40.9 bits (96), Expect = 7e-04
 Identities = 26/61 (42%), Positives = 36/61 (59%), Gaps = 5/61 (8%)

Query: 171 VMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPG 230
           + +VG PNVGKSS++NAL    +K+ +A+ V    G TR V+         LI +LDT G
Sbjct: 206 LAIVGSPNVGKSSLLNAL----LKQDRAI-VSDIKGTTRDVVEGDFELNGILIKLLDTAG 260

Query: 231 I 231
           I
Sbjct: 261 I 261

TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer [Protein synthesis, tRNA and rRNA base modification]. Length = 442

>gnl|CDD|237511 PRK13796, PRK13796, GTPase YqeH; Provisional

 Score = 40.6 bits (96), Expect = 8e-04
 Identities = 26/96 (27%), Positives = 48/96 (50%), Gaps = 18/96 (18%)

Query: 44  PMVLVLNKRDLI--NSKHESLIE---EKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQ 98
           P++LV NK DL+  + K   +     ++ ++      +V+  + +     G+ ++L  ++
Sbjct: 98  PVLLVGNKADLLPKSVKKNKVKNWLRQEAKELGLRPVDVVLISAQKG--HGIDELLEAIE 155

Query: 99  HISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIINAL 134
                  R  R +VY     VVGV NVGKS++IN +
Sbjct: 156 KY-----REGR-DVY-----VVGVTNVGKSTLINRI 180

Length = 365

>gnl|CDD|185391 PRK15494, era, GTPase Era; Provisional

 Score = 40.1 bits (93), Expect = 0.001
 Identities = 42/155 (27%), Positives = 73/155 (47%), Gaps = 20/155 (12%)

Query: 170 TVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTP 229
           +V ++G PN GKS+++N +        K   V PK   TRS+++ +   +   + + DTP
Sbjct: 54  SVCIIGRPNSGKSTLLNRIIGE-----KLSIVTPKVQTTRSIITGIITLKDTQVILYDTP 108

Query: 230 GISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDE-PSD 288
           GI  P+  +LE  M   A ++L          AD +L  ++   ++  +    LD+  S 
Sbjct: 109 GIFEPK-GSLEKAMVRCAWSSLHS--------ADLVLLIIDSLKSFDDITHNILDKLRSL 159

Query: 289 DIV--MLLAKAAIKKKWFKRAFDVSSNSVRMFPDT 321
           +IV   LL K  I+ K+     D+ +      PD+
Sbjct: 160 NIVPIFLLNKIDIESKYLN---DIKAFLTENHPDS 191

Length = 339

>gnl|CDD|232980 TIGR00450, mnmE_trmE_thdF, tRNA modification GTPase TrmE

 Score = 39.8 bits (93), Expect = 0.002
 Identities = 22/64 (34%), Positives = 35/64 (54%)

Query: 4   GLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHESLI 63
           G++   K +K  D+VI V D+  P T  + L+    ++ +P +LVLNK DL  +  E  +
Sbjct: 272 GIEKSFKAIKQADLVIYVLDASQPLTKDDFLIIDLNKSKKPFILVLNKIDLKINSLEFFV 331

Query: 64  EEKV 67
             KV
Sbjct: 332 SSKV 335

TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer [Protein synthesis, tRNA and rRNA base modification]. Length = 442

>gnl|CDD|179525 PRK03003, PRK03003, GTP-binding protein Der; Reviewed

 Score = 40.0 bits (94), Expect = 0.002
 Identities = 23/62 (37%), Positives = 34/62 (54%), Gaps = 7/62 (11%)

Query: 171 VMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRS-VMSQVKISEKPLIYILDTP 229
           V +VG PNVGKSS++N L        ++V V   AG T   V S +++  K   ++ DT 
Sbjct: 214 VALVGKPNVGKSSLLNKLAGEE----RSV-VDDVAGTTVDPVDSLIELGGKTWRFV-DTA 267

Query: 230 GI 231
           G+
Sbjct: 268 GL 269

Length = 472

>gnl|CDD|235392 PRK05291, trmE, tRNA modification GTPase TrmE; Reviewed

 Score = 39.7 bits (94), Expect = 0.002
 Identities = 24/59 (40%), Positives = 35/59 (59%), Gaps = 7/59 (11%)

Query: 174 VGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVM-SQVKISEKPLIYILDTPGI 231
            G PNVGKSS++NAL    + + +A+ V   AG TR V+   + +   PL  ++DT GI
Sbjct: 221 AGRPNVGKSSLLNAL----LGEERAI-VTDIAGTTRDVIEEHINLDGIPLR-LIDTAGI 273

Length = 449

>gnl|CDD|234631 PRK00098, PRK00098, GTPase RsgA; Reviewed

 Score = 39.4 bits (93), Expect = 0.002
 Identities = 27/114 (23%), Positives = 49/114 (42%), Gaps = 30/114 (26%)

Query: 40  QNIRPMVLVLNKRDLINSKHESLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQH 99
             I+P ++VLNK DL++   E    E +   ++   +V+  + +    +G+ ++ P L  
Sbjct: 110 NGIKP-IIVLNKIDLLDDLEE--ARELLALYRAIGYDVLELSAKEG--EGLDELKPLLAG 164

Query: 100 ISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIINALR----------SSHMKKGK 143
                           TV + G   VGKS+++NAL           S  + +GK
Sbjct: 165 --------------KVTV-LAGQSGVGKSTLLNALAPDLELKTGEISEALGRGK 203

Length = 298

>gnl|CDD|236546 PRK09518, PRK09518, bifunctional cytidylate kinase/GTPase Der; Reviewed

 Score = 39.8 bits (93), Expect = 0.002
 Identities = 27/62 (43%), Positives = 35/62 (56%), Gaps = 7/62 (11%)

Query: 171 VMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRS-VMSQVKISEKPLIYILDTP 229
           V +VG PNVGKSS++N L        +AV V   AG TR  V   V+I  +  ++I DT 
Sbjct: 453 VALVGRPNVGKSSLLNQLTHEE----RAV-VNDLAGTTRDPVDEIVEIDGEDWLFI-DTA 506

Query: 230 GI 231
           GI
Sbjct: 507 GI 508

Length = 712

>gnl|CDD|206665 cd01876, YihA_EngB, YihA (EngB) GTPase family

 Score = 37.5 bits (88), Expect = 0.003
 Identities = 18/60 (30%), Positives = 24/60 (40%), Gaps = 13/60 (21%)

Query: 174 VGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISE---KPLIYILDTPG 230
            G  NVGKSS+INAL      + K        G T+       I+         ++D PG
Sbjct: 5   AGRSNVGKSSLINAL----TNRKKLARTSKTPGRTQ------LINFFNVGDKFRLVDLPG 54

The YihA (EngB) subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target. Length = 170

>gnl|CDD|232886 TIGR00231, small_GTP, small GTP-binding protein domain

 Score = 37.4 bits (87), Expect = 0.004
 Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 7/63 (11%)

Query: 171 VMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRS-VMSQVKI-SEKPLIYILDT 228
           +++VG PNVGKS+++N L        K      K G TR+ V + ++   +     +LDT
Sbjct: 4   IVIVGDPNVGKSTLLNRL-----LGNKISITEYKPGTTRNYVTTVIEEDGKTYKFNLLDT 58

Query: 229 PGI 231
            G 
Sbjct: 59  AGQ 61

Proteins with a small GTP-binding domain recognized by this model include Ras, RhoA, Rab11, translation elongation factor G, translation initiation factor IF-2, tetratcycline resistance protein TetM, CDC42, Era, ADP-ribosylation factors, tdhF, and many others. In some proteins the domain occurs more than once.This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model [Unknown function, General]. Length = 162

>gnl|CDD|179790 PRK04213, PRK04213, GTP-binding protein; Provisional

 Score = 37.6 bits (88), Expect = 0.004
 Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 6/43 (13%)

Query: 168 NTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRS 210
              ++ VG  NVGKS+++  L       GK V VG + GVTR 
Sbjct: 9   KPEIVFVGRSNVGKSTLVREL------TGKKVRVGKRPGVTRK 45

Length = 201

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	352
PRK09563	287	rbgA GTPase YlqF; Reviewed	100.0
TIGR03596	276	GTPase_YlqF ribosome biogenesis GTP-binding protei	100.0
KOG2485|consensus	335		100.0
KOG2484|consensus	435		100.0
COG1161	322	Predicted GTPases [General function prediction onl	100.0
KOG1424|consensus	562		100.0
KOG2423|consensus	572		100.0
COG1160	444	Predicted GTPases [General function prediction onl	99.97
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	99.96
cd01856	171	YlqF YlqF. Proteins of the YlqF family contain all	99.95
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	99.94
cd04178	172	Nucleostemin_like Nucleostemin-like. Nucleostemin	99.94
cd01849	155	YlqF_related_GTPase YlqF-related GTPases. These pr	99.93
cd01859	156	MJ1464 MJ1464. This family represents archaeal GTP	99.93
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	99.93
PRK12289	352	GTPase RsgA; Reviewed	99.91
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	99.91
PRK13796	365	GTPase YqeH; Provisional	99.9
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.9
TIGR03597	360	GTPase_YqeH ribosome biogenesis GTPase YqeH. This	99.89
PRK12288	347	GTPase RsgA; Reviewed	99.89
PRK00093	435	GTP-binding protein Der; Reviewed	99.88
PRK00098	298	GTPase RsgA; Reviewed	99.87
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	99.87
PRK03003	472	GTP-binding protein Der; Reviewed	99.87
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.85
COG1162	301	Predicted GTPases [General function prediction onl	99.8
PRK01889	356	GTPase RsgA; Reviewed	99.72
COG1159	298	Era GTPase [General function prediction only]	99.68
COG1084	346	Predicted GTPase [General function prediction only	99.59
PF03193	161	DUF258: Protein of unknown function, DUF258; Inter	99.59
COG1160	444	Predicted GTPases [General function prediction onl	99.58
PF02421	156	FeoB_N: Ferrous iron transport protein B; InterPro	99.56
COG0486	454	ThdF Predicted GTPase [General function prediction	99.49
PTZ00258	390	GTP-binding protein; Provisional	99.48
PRK09601	364	GTP-binding protein YchF; Reviewed	99.44
cd01900	274	YchF YchF subfamily. YchF is a member of the Obg f	99.43
PF01926	116	MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I	99.41
PRK12298	390	obgE GTPase CgtA; Reviewed	99.37
KOG1191|consensus	531		99.37
TIGR00436	270	era GTP-binding protein Era. Era is an essential G	99.36
COG0218	200	Predicted GTPase [General function prediction only	99.32
KOG1423|consensus	379		99.32
COG0012	372	Predicted GTPase, probable translation factor [Tra	99.31
COG0536	369	Obg Predicted GTPase [General function prediction	99.26
cd01853	249	Toc34_like Toc34-like (Translocon at the Outer-env	99.24
PRK09602	396	translation-associated GTPase; Reviewed	99.21
PRK15494	339	era GTPase Era; Provisional	99.21
cd01852	196	AIG1 AIG1 (avrRpt2-induced gene 1). This represent	99.21
PRK00089	292	era GTPase Era; Reviewed	99.2
COG0370	653	FeoB Fe2+ transport system protein B [Inorganic io	99.18
cd01899	318	Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg	99.18
PRK12296	500	obgE GTPase CgtA; Reviewed	99.17
PRK12299	335	obgE GTPase CgtA; Reviewed	99.17
KOG1489|consensus	366		99.17
KOG1491|consensus	391		99.16
TIGR03156	351	GTP_HflX GTP-binding protein HflX. This protein fa	99.15
KOG1547|consensus	336		99.14
TIGR00991	313	3a0901s02IAP34 GTP-binding protein (Chloroplast En	99.13
PRK12297	424	obgE GTPase CgtA; Reviewed	99.12
TIGR00092	368	GTP-binding protein YchF. This predicted GTP-bindi	99.11
TIGR02729	329	Obg_CgtA Obg family GTPase CgtA. This model descri	99.1
COG1159	298	Era GTPase [General function prediction only]	99.1
TIGR00450	442	mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE	99.05
KOG1490|consensus	620		99.05
KOG1249|consensus	572		99.04
PRK05291	449	trmE tRNA modification GTPase TrmE; Reviewed	99.03
PRK03003	472	GTP-binding protein Der; Reviewed	99.01
cd01898	170	Obg Obg subfamily. The Obg nucleotide binding prot	99.01
PF10662	143	PduV-EutP: Ethanolamine utilisation - propanediol	99.0
COG1163	365	DRG Predicted GTPase [General function prediction	98.98
PRK11058	426	GTPase HflX; Provisional	98.97
COG3596	296	Predicted GTPase [General function prediction only	98.96
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	98.95
PF04548	212	AIG1: AIG1 family; InterPro: IPR006703 This entry	98.94
TIGR00436	270	era GTP-binding protein Era. Era is an essential G	98.94
PF00009	188	GTP_EFTU: Elongation factor Tu GTP binding domain;	98.93
cd01896	233	DRG The developmentally regulated GTP-binding prot	98.92
PRK04213	201	GTP-binding protein; Provisional	98.92
cd01897	168	NOG NOG1 is a nucleolar GTP-binding protein presen	98.91
TIGR00993	763	3a0901s04IAP86 chloroplast protein import componen	98.91
cd04164	157	trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein	98.9
COG0486	454	ThdF Predicted GTPase [General function prediction	98.89
cd01894	157	EngA1 EngA1 subfamily. This CD represents the firs	98.88
cd01894	157	EngA1 EngA1 subfamily. This CD represents the firs	98.87
COG5019	373	CDC3 Septin family protein [Cell division and chro	98.86
cd01879	158	FeoB Ferrous iron transport protein B (FeoB) subfa	98.86
COG2262	411	HflX GTPases [General function prediction only]	98.85
PRK15467	158	ethanolamine utilization protein EutP; Provisional	98.84
PRK09554	772	feoB ferrous iron transport protein B; Reviewed	98.84
KOG2655|consensus	366		98.84
cd01895	174	EngA2 EngA2 subfamily. This CD represents the seco	98.84
cd04163	168	Era Era subfamily. Era (E. coli Ras-like protein)	98.83
TIGR03598	179	GTPase_YsxC ribosome biogenesis GTP-binding protei	98.83
cd01888	203	eIF2_gamma eIF2-gamma (gamma subunit of initiation	98.82
cd01878	204	HflX HflX subfamily. A distinct conserved domain w	98.8
TIGR02528	142	EutP ethanolamine utilization protein, EutP. This	98.8
PRK15494	339	era GTPase Era; Provisional	98.8
cd01890	179	LepA LepA subfamily. LepA belongs to the GTPase fa	98.79
COG2262	411	HflX GTPases [General function prediction only]	98.79
PRK00454	196	engB GTP-binding protein YsxC; Reviewed	98.78
PRK00089	292	era GTPase Era; Reviewed	98.78
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	98.77
PRK00093	435	GTP-binding protein Der; Reviewed	98.76
cd04165	224	GTPBP1_like GTPBP1-like. Mammalian GTP binding pro	98.75
PRK09866	741	hypothetical protein; Provisional	98.75
cd04171	164	SelB SelB subfamily. SelB is an elongation factor	98.75
cd01881	176	Obg_like The Obg-like subfamily consists of five w	98.74
cd01895	174	EngA2 EngA2 subfamily. This CD represents the seco	98.71
PF00735	281	Septin: Septin; InterPro: IPR000038 Septins consti	98.7
cd01889	192	SelB_euk SelB subfamily. SelB is an elongation fac	98.68
TIGR02729	329	Obg_CgtA Obg family GTPase CgtA. This model descri	98.67
cd01898	170	Obg Obg subfamily. The Obg nucleotide binding prot	98.67
cd00881	189	GTP_translation_factor GTP translation factor fami	98.67
cd01851	224	GBP Guanylate-binding protein (GBP), N-terminal do	98.66
cd01850	276	CDC_Septin CDC/Septin. Septins are a conserved fam	98.65
PRK12299	335	obgE GTPase CgtA; Reviewed	98.65
PF05049	376	IIGP: Interferon-inducible GTPase (IIGP); InterPro	98.64
TIGR03156	351	GTP_HflX GTP-binding protein HflX. This protein fa	98.64
cd04171	164	SelB SelB subfamily. SelB is an elongation factor	98.63
PRK12296	500	obgE GTPase CgtA; Reviewed	98.63
cd04163	168	Era Era subfamily. Era (E. coli Ras-like protein)	98.62
cd01878	204	HflX HflX subfamily. A distinct conserved domain w	98.62
cd04164	157	trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein	98.6
TIGR00231	161	small_GTP small GTP-binding protein domain. This m	98.59
cd01884	195	EF_Tu EF-Tu subfamily. This subfamily includes ort	98.58
cd04104	197	p47_IIGP_like p47 (47-kDa) family. The p47 GTPase	98.58
PRK12298	390	obgE GTPase CgtA; Reviewed	98.57
TIGR00437	591	feoB ferrous iron transporter FeoB. FeoB (773 amin	98.57
PTZ00327	460	eukaryotic translation initiation factor 2 gamma s	98.54
cd00880	163	Era_like Era (E. coli Ras-like protein)-like. This	98.51
PRK10512	614	selenocysteinyl-tRNA-specific translation factor;	98.51
cd01887	168	IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo	98.5
cd01879	158	FeoB Ferrous iron transport protein B (FeoB) subfa	98.49
cd01897	168	NOG NOG1 is a nucleolar GTP-binding protein presen	98.47
cd01861	161	Rab6 Rab6 subfamily. Rab6 is involved in microtubu	98.47
cd04166	208	CysN_ATPS CysN_ATPS subfamily. CysN, together with	98.47
PRK05291	449	trmE tRNA modification GTPase TrmE; Reviewed	98.47
cd00880	163	Era_like Era (E. coli Ras-like protein)-like. This	98.47
cd01876	170	YihA_EngB The YihA (EngB) subfamily. This subfamil	98.46
PRK12297	424	obgE GTPase CgtA; Reviewed	98.46
PF02421	156	FeoB_N: Ferrous iron transport protein B; InterPro	98.45
COG0218	200	Predicted GTPase [General function prediction only	98.45
COG4917	148	EutP Ethanolamine utilization protein [Amino acid	98.43
TIGR00475	581	selB selenocysteine-specific elongation factor Sel	98.43
cd04160	167	Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote	98.43
cd04156	160	ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su	98.42
cd01886	270	EF-G Elongation factor G (EF-G) subfamily. Translo	98.42
PRK04000	411	translation initiation factor IF-2 subunit gamma;	98.41
cd04158	169	ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor	98.4
PRK00454	196	engB GTP-binding protein YsxC; Reviewed	98.4
KOG1486|consensus	364		98.39
cd04154	173	Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are	98.39
TIGR03680	406	eif2g_arch translation initiation factor 2 subunit	98.39
PTZ00099	176	rab6; Provisional	98.39
cd04124	161	RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily	98.39
cd04149	168	Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor	98.39
cd01887	168	IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo	98.37
cd01881	176	Obg_like The Obg-like subfamily consists of five w	98.37
smart00178	184	SAR Sar1p-like members of the Ras-family of small	98.37
cd01889	192	SelB_euk SelB subfamily. SelB is an elongation fac	98.36
cd04150	159	Arf1_5_like Arf1-Arf5-like subfamily. This subfami	98.36
cd04151	158	Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes t	98.36
PRK11058	426	GTPase HflX; Provisional	98.36
cd01863	161	Rab18 Rab18 subfamily. Mammalian Rab18 is implicat	98.36
cd01891	194	TypA_BipA TypA (tyrosine phosphorylated protein A)	98.35
KOG1489|consensus	366		98.35
cd00154	159	Rab Rab family. Rab GTPases form the largest famil	98.35
PRK13768	253	GTPase; Provisional	98.35
cd01893	166	Miro1 Miro1 subfamily. Miro (mitochondrial Rho) pr	98.34
cd04152	183	Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) i	98.34
cd04153	174	Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) a	98.34
KOG1423|consensus	379		98.33
cd04142	198	RRP22 RRP22 subfamily. RRP22 (Ras-related protein	98.33
cd04145	164	M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf	98.33
TIGR03598	179	GTPase_YsxC ribosome biogenesis GTP-binding protei	98.33
smart00177	175	ARF ARF-like small GTPases; ARF, ADP-ribosylation	98.33
cd04157	162	Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub	98.33
cd04166	208	CysN_ATPS CysN_ATPS subfamily. CysN, together with	98.33
cd01890	179	LepA LepA subfamily. LepA belongs to the GTPase fa	98.32
PLN03118	211	Rab family protein; Provisional	98.32
COG0536	369	Obg Predicted GTPase [General function prediction	98.31
cd01860	163	Rab5_related Rab5-related subfamily. This subfamil	98.31
cd01866	168	Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg	98.31
TIGR01393	595	lepA GTP-binding protein LepA. LepA (GUF1 in Sacca	98.31
PRK12317	425	elongation factor 1-alpha; Reviewed	98.3
cd01868	165	Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a	98.3
cd04119	168	RJL RJL (RabJ-Like) subfamily. RJLs are found in m	98.29
PRK05433	600	GTP-binding protein LepA; Provisional	98.29
cd00881	189	GTP_translation_factor GTP translation factor fami	98.29
KOG0410|consensus	410		98.29
cd00878	158	Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-lik	98.28
cd04127	180	Rab27A Rab27a subfamily. The Rab27a subfamily cons	98.27
PLN00223	181	ADP-ribosylation factor; Provisional	98.27
TIGR02836	492	spore_IV_A stage IV sporulation protein A. A compa	98.27
cd04101	164	RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove	98.27
cd04155	173	Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f	98.27
cd00879	190	Sar1 Sar1 subfamily. Sar1 is an essential componen	98.27
cd01892	169	Miro2 Miro2 subfamily. Miro (mitochondrial Rho) pr	98.26
cd04160	167	Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote	98.26
cd01884	195	EF_Tu EF-Tu subfamily. This subfamily includes ort	98.26
smart00175	164	RAB Rab subfamily of small GTPases. Rab GTPases ar	98.25
cd04145	164	M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf	98.24
cd01876	170	YihA_EngB The YihA (EngB) subfamily. This subfamil	98.24
cd04113	161	Rab4 Rab4 subfamily. Rab4 has been implicated in n	98.23
cd04138	162	H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras,	98.23
cd01864	165	Rab19 Rab19 subfamily. Rab19 proteins are associat	98.23
cd04112	191	Rab26 Rab26 subfamily. First identified in rat pan	98.23
cd01865	165	Rab3 Rab3 subfamily. The Rab3 subfamily contains R	98.23
cd00877	166	Ran Ran (Ras-related nuclear proteins) /TC4 subfam	98.23
TIGR02034	406	CysN sulfate adenylyltransferase, large subunit. H	98.22
smart00175	164	RAB Rab subfamily of small GTPases. Rab GTPases ar	98.22
cd04139	164	RalA_RalB RalA/RalB subfamily. The Ral (Ras-like)	98.22
cd01862	172	Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th	98.22
PRK12736	394	elongation factor Tu; Reviewed	98.22
TIGR00484	689	EF-G translation elongation factor EF-G. After pep	98.22
cd01862	172	Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th	98.21
cd04154	173	Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are	98.21
cd01865	165	Rab3 Rab3 subfamily. The Rab3 subfamily contains R	98.21
cd01869	166	Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev	98.21
PTZ00133	182	ADP-ribosylation factor; Provisional	98.21
PRK15467	158	ethanolamine utilization protein EutP; Provisional	98.21
cd01861	161	Rab6 Rab6 subfamily. Rab6 is involved in microtubu	98.2
cd01867	167	Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp	98.2
cd04119	168	RJL RJL (RabJ-Like) subfamily. RJLs are found in m	98.2
cd01866	168	Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg	98.19
cd04122	166	Rab14 Rab14 subfamily. Rab14 GTPases are localized	98.19
cd01869	166	Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev	98.19
cd04138	162	H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras,	98.19
smart00173	164	RAS Ras subfamily of RAS small GTPases. Similar in	98.18
cd01867	167	Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp	98.18
CHL00071	409	tufA elongation factor Tu	98.18
cd04159	159	Arl10_like Arl10-like subfamily. Arl9/Arl10 was id	98.18
cd04136	163	Rap_like Rap-like subfamily. The Rap subfamily con	98.18
cd04157	162	Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub	98.18
cd04121	189	Rab40 Rab40 subfamily. This subfamily contains Rab	98.18
cd04106	162	Rab23_lke Rab23-like subfamily. Rab23 is a member	98.18
cd04170	268	EF-G_bact Elongation factor G (EF-G) subfamily. Tr	98.18
smart00178	184	SAR Sar1p-like members of the Ras-family of small	98.18
cd04120	202	Rab12 Rab12 subfamily. Rab12 was first identified	98.17
cd01864	165	Rab19 Rab19 subfamily. Rab19 proteins are associat	98.17
cd04107	201	Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38	98.16
cd01891	194	TypA_BipA TypA (tyrosine phosphorylated protein A)	98.16
cd04108	170	Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found pr	98.16
cd04139	164	RalA_RalB RalA/RalB subfamily. The Ral (Ras-like)	98.16
cd04175	164	Rap1 Rap1 subgroup. The Rap1 subgroup is part of t	98.15
PF00350	168	Dynamin_N: Dynamin family; InterPro: IPR001401 Mem	98.15
cd04156	160	ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su	98.15
cd04109	215	Rab28 Rab28 subfamily. First identified in maize,	98.15
cd04123	162	Rab21 Rab21 subfamily. The localization and functi	98.15
cd04168	237	TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), T	98.14
CHL00071	409	tufA elongation factor Tu	98.14
cd04106	162	Rab23_lke Rab23-like subfamily. Rab23 is a member	98.14
cd01868	165	Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a	98.13
cd01860	163	Rab5_related Rab5-related subfamily. This subfamil	98.13
PF00025	175	Arf: ADP-ribosylation factor family The prints ent	98.13
cd04113	161	Rab4 Rab4 subfamily. Rab4 has been implicated in n	98.12
cd00154	159	Rab Rab family. Rab GTPases form the largest famil	98.12
cd04175	164	Rap1 Rap1 subgroup. The Rap1 subgroup is part of t	98.12
cd04124	161	RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily	98.12
cd00878	158	Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-lik	98.12
cd01883	219	EF1_alpha Eukaryotic elongation factor 1 (EF1) alp	98.11
PRK00007	693	elongation factor G; Reviewed	98.11
smart00176	200	RAN Ran (Ras-related nuclear proteins) /TC4 subfam	98.11
cd04153	174	Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) a	98.11
cd04123	162	Rab21 Rab21 subfamily. The localization and functi	98.11
cd01863	161	Rab18 Rab18 subfamily. Mammalian Rab18 is implicat	98.11
cd04132	187	Rho4_like Rho4-like subfamily. Rho4 is a GTPase th	98.11
cd04112	191	Rab26 Rab26 subfamily. First identified in rat pan	98.11
cd04118	193	Rab24 Rab24 subfamily. Rab24 is distinct from othe	98.1
cd04142	198	RRP22 RRP22 subfamily. RRP22 (Ras-related protein	98.1
smart00173	164	RAS Ras subfamily of RAS small GTPases. Similar in	98.1
cd04110	199	Rab35 Rab35 subfamily. Rab35 is one of several Rab	98.1
cd04141	172	Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like p	98.1
cd04149	168	Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor	98.1
cd04114	169	Rab30 Rab30 subfamily. Rab30 appears to be associa	98.1
cd04136	163	Rap_like Rap-like subfamily. The Rap subfamily con	98.09
cd00157	171	Rho Rho (Ras homology) family. Members of the Rho	98.09
cd04147	198	Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-v	98.09
TIGR00450	442	mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE	98.08
cd04176	163	Rap2 Rap2 subgroup. The Rap2 subgroup is part of t	98.08
cd04116	170	Rab9 Rab9 subfamily. Rab9 is found in late endosom	98.08
cd00879	190	Sar1 Sar1 subfamily. Sar1 is an essential componen	98.07
PRK12317	425	elongation factor 1-alpha; Reviewed	98.07
cd00876	160	Ras Ras family. The Ras family of the Ras superfam	98.07
PRK12735	396	elongation factor Tu; Reviewed	98.07
cd04114	169	Rab30 Rab30 subfamily. Rab30 appears to be associa	98.07
PRK00049	396	elongation factor Tu; Reviewed	98.06
TIGR00487	587	IF-2 translation initiation factor IF-2. This mode	98.06
PTZ00369	189	Ras-like protein; Provisional	98.06
cd04140	165	ARHI_like ARHI subfamily. ARHI (A Ras homolog memb	98.06
cd04137	180	RheB Rheb (Ras Homolog Enriched in Brain) subfamil	98.06
cd04177	168	RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the	98.06
PRK12739	691	elongation factor G; Reviewed	98.06
cd04162	164	Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9	98.05
cd00877	166	Ran Ran (Ras-related nuclear proteins) /TC4 subfam	98.05
cd04122	166	Rab14 Rab14 subfamily. Rab14 GTPases are localized	98.05
cd04144	190	Ras2 Ras2 subfamily. The Ras2 subfamily, found exc	98.04
cd04155	173	Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f	98.04
PRK05506	632	bifunctional sulfate adenylyltransferase subunit 1	98.04
cd04118	193	Rab24 Rab24 subfamily. Rab24 is distinct from othe	98.04
cd04140	165	ARHI_like ARHI subfamily. ARHI (A Ras homolog memb	98.04
cd04110	199	Rab35 Rab35 subfamily. Rab35 is one of several Rab	98.04
cd04161	167	Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (	98.03
PRK04213	201	GTP-binding protein; Provisional	98.03
cd04152	183	Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) i	98.02
cd04158	169	ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor	98.02
cd04169	267	RF3 RF3 subfamily. Peptide chain release factor 3	98.02
cd04148	221	RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Ki	98.01
cd04128	182	Spg1 Spg1p. Spg1p (septum-promoting GTPase) was fi	98.01
cd04151	158	Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes t	98.01
cd01893	166	Miro1 Miro1 subfamily. Miro (mitochondrial Rho) pr	98.01
TIGR00483	426	EF-1_alpha translation elongation factor EF-1 alph	98.01
cd04115	170	Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is u	98.01
cd04125	188	RabA_like RabA-like subfamily. RabA was first iden	98.01
PLN03127	447	Elongation factor Tu; Provisional	98.0
TIGR00485	394	EF-Tu translation elongation factor TU. This align	98.0
PLN03118	211	Rab family protein; Provisional	98.0
cd04130	173	Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive	98.0
PRK05124	474	cysN sulfate adenylyltransferase subunit 1; Provis	98.0
cd04126	220	Rab20 Rab20 subfamily. Rab20 is one of several Rab	97.99
cd04132	187	Rho4_like Rho4-like subfamily. Rho4 is a GTPase th	97.99
CHL00189	742	infB translation initiation factor 2; Provisional	97.99
PLN03071	219	GTP-binding nuclear protein Ran; Provisional	97.98
PTZ00133	182	ADP-ribosylation factor; Provisional	97.98
PLN03127	447	Elongation factor Tu; Provisional	97.98
cd00157	171	Rho Rho (Ras homology) family. Members of the Rho	97.98
PRK12735	396	elongation factor Tu; Reviewed	97.98
cd04101	164	RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove	97.97
PLN03071	219	GTP-binding nuclear protein Ran; Provisional	97.97
TIGR01394	594	TypA_BipA GTP-binding protein TypA/BipA. This bact	97.97
smart00174	174	RHO Rho (Ras homology) subfamily of Ras-like small	97.96
cd04125	188	RabA_like RabA-like subfamily. RabA was first iden	97.96
cd04109	215	Rab28 Rab28 subfamily. First identified in maize,	97.96
cd00876	160	Ras Ras family. The Ras family of the Ras superfam	97.95
cd04144	190	Ras2 Ras2 subfamily. The Ras2 subfamily, found exc	97.95
TIGR00437	591	feoB ferrous iron transporter FeoB. FeoB (773 amin	97.95
cd04127	180	Rab27A Rab27a subfamily. The Rab27a subfamily cons	97.95
TIGR00491	590	aIF-2 translation initiation factor aIF-2/yIF-2. T	97.95
cd04111	211	Rab39 Rab39 subfamily. Found in eukaryotes, Rab39	97.95
PRK05306	787	infB translation initiation factor IF-2; Validated	97.95
cd00882	157	Ras_like_GTPase Ras-like GTPase superfamily. The R	97.95
TIGR00231	161	small_GTP small GTP-binding protein domain. This m	97.94
KOG2486|consensus	320		97.94
cd04176	163	Rap2 Rap2 subgroup. The Rap2 subgroup is part of t	97.94
cd04107	201	Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38	97.94
cd01882	225	BMS1 Bms1. Bms1 is an essential, evolutionarily co	97.93
cd01873	195	RhoBTB RhoBTB subfamily. Members of the RhoBTB sub	97.93
cd04116	170	Rab9 Rab9 subfamily. Rab9 is found in late endosom	97.93
cd04146	165	RERG_RasL11_like RERG/RasL11-like subfamily. RERG	97.93
cd04133	176	Rop_like Rop subfamily. The Rop (Rho-related prote	97.93
cd04159	159	Arl10_like Arl10-like subfamily. Arl9/Arl10 was id	97.93
PLN03108	210	Rab family protein; Provisional	97.92
KOG0462|consensus	650		97.92
cd01871	174	Rac1_like Rac1-like subfamily. The Rac1-like subfa	97.92
PRK00049	396	elongation factor Tu; Reviewed	97.91
COG0532	509	InfB Translation initiation factor 2 (IF-2; GTPase	97.91
TIGR00487	587	IF-2 translation initiation factor IF-2. This mode	97.91
PLN03126	478	Elongation factor Tu; Provisional	97.91
PF08477	119	Miro: Miro-like protein; InterPro: IPR013684 Mitoc	97.91
cd04146	165	RERG_RasL11_like RERG/RasL11-like subfamily. RERG	97.9
cd04111	211	Rab39 Rab39 subfamily. Found in eukaryotes, Rab39	97.9
PLN03110	216	Rab GTPase; Provisional	97.9
cd04150	159	Arf1_5_like Arf1-Arf5-like subfamily. This subfami	97.9
cd04135	174	Tc10 TC10 subfamily. TC10 is a Rho family protein	97.89
PRK05306	787	infB translation initiation factor IF-2; Validated	97.89
KOG1191|consensus	531		97.89
PF00009	188	GTP_EFTU: Elongation factor Tu GTP binding domain;	97.88
PRK09554	772	feoB ferrous iron transport protein B; Reviewed	97.88
PRK14845	1049	translation initiation factor IF-2; Provisional	97.88
TIGR02528	142	EutP ethanolamine utilization protein, EutP. This	97.86
PLN03110	216	Rab GTPase; Provisional	97.86
PRK10218	607	GTP-binding protein; Provisional	97.86
smart00174	174	RHO Rho (Ras homology) subfamily of Ras-like small	97.86
cd04108	170	Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found pr	97.86
KOG0075|consensus	186		97.86
PTZ00369	189	Ras-like protein; Provisional	97.85
cd04174	232	Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a memb	97.85
PRK05506	632	bifunctional sulfate adenylyltransferase subunit 1	97.85
cd04115	170	Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is u	97.85
cd04148	221	RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Ki	97.85
cd04117	161	Rab15 Rab15 subfamily. Rab15 colocalizes with the	97.84
cd04134	189	Rho3 Rho3 subfamily. Rho3 is a member of the Rho f	97.84
cd04161	167	Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (	97.84
cd01874	175	Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPas	97.84
KOG1487|consensus	358		97.83
cd04117	161	Rab15 Rab15 subfamily. Rab15 colocalizes with the	97.82
smart00177	175	ARF ARF-like small GTPases; ARF, ADP-ribosylation	97.82
COG3276	447	SelB Selenocysteine-specific translation elongatio	97.82
cd04135	174	Tc10 TC10 subfamily. TC10 is a Rho family protein	97.82
PRK12736	394	elongation factor Tu; Reviewed	97.81
cd01870	175	RhoA_like RhoA-like subfamily. The RhoA subfamily	97.81
TIGR00475	581	selB selenocysteine-specific elongation factor Sel	97.81
cd04141	172	Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like p	97.8
PLN00223	181	ADP-ribosylation factor; Provisional	97.8
PLN03108	210	Rab family protein; Provisional	97.8
cd01870	175	RhoA_like RhoA-like subfamily. The RhoA subfamily	97.8
TIGR00485	394	EF-Tu translation elongation factor TU. This align	97.79
cd04172	182	Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE	97.79
CHL00189	742	infB translation initiation factor 2; Provisional	97.78
cd01875	191	RhoG RhoG subfamily. RhoG is a GTPase with high se	97.77
cd04168	237	TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), T	97.76
COG2895	431	CysN GTPases - Sulfate adenylate transferase subun	97.76
cd04143	247	Rhes_like Rhes_like subfamily. This subfamily incl	97.75
cd01882	225	BMS1 Bms1. Bms1 is an essential, evolutionarily co	97.75
PRK04004	586	translation initiation factor IF-2; Validated	97.74
cd04131	178	Rnd Rnd subfamily. The Rnd subfamily contains Rnd1	97.74
cd01871	174	Rac1_like Rac1-like subfamily. The Rac1-like subfa	97.73
cd04130	173	Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive	97.73
COG5257	415	GCD11 Translation initiation factor 2, gamma subun	97.73
cd01885	222	EF2 EF2 (for archaea and eukarya). Translocation r	97.72
cd04177	168	RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the	97.72
cd04126	220	Rab20 Rab20 subfamily. Rab20 is one of several Rab	97.7
cd01874	175	Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPas	97.7
cd04147	198	Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-v	97.69
COG2229	187	Predicted GTPase [General function prediction only	97.69
PLN03126	478	Elongation factor Tu; Provisional	97.69
PTZ00141	446	elongation factor 1- alpha; Provisional	97.69
TIGR00491	590	aIF-2 translation initiation factor aIF-2/yIF-2. T	97.68
cd04167	213	Snu114p Snu114p subfamily. Snu114p is one of sever	97.67
cd04103	158	Centaurin_gamma Centaurin gamma. The centaurins (a	97.66
cd00882	157	Ras_like_GTPase Ras-like GTPase superfamily. The R	97.65
cd04137	180	RheB Rheb (Ras Homolog Enriched in Brain) subfamil	97.65
cd04134	189	Rho3 Rho3 subfamily. Rho3 is a member of the Rho f	97.65
cd04131	178	Rnd Rnd subfamily. The Rnd subfamily contains Rnd1	97.64
cd01886	270	EF-G Elongation factor G (EF-G) subfamily. Translo	97.63
cd04104	197	p47_IIGP_like p47 (47-kDa) family. The p47 GTPase	97.63
cd04162	164	Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9	97.62
smart00053	240	DYNc Dynamin, GTPase. Large GTPases that mediate v	97.62
cd01896	233	DRG The developmentally regulated GTP-binding prot	97.61
KOG0078|consensus	207		97.6
cd04129	187	Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that	97.59
PF10662	143	PduV-EutP: Ethanolamine utilisation - propanediol	97.59
PTZ00132	215	GTP-binding nuclear protein Ran; Provisional	97.59
cd04105	203	SR_beta Signal recognition particle receptor, beta	97.58
PRK12739	691	elongation factor G; Reviewed	97.56
cd04143	247	Rhes_like Rhes_like subfamily. This subfamily incl	97.55
PRK05124	474	cysN sulfate adenylyltransferase subunit 1; Provis	97.55
cd01892	169	Miro2 Miro2 subfamily. Miro (mitochondrial Rho) pr	97.55
TIGR00503	527	prfC peptide chain release factor 3. This translat	97.54
cd01883	219	EF1_alpha Eukaryotic elongation factor 1 (EF1) alp	97.54
TIGR00483	426	EF-1_alpha translation elongation factor EF-1 alph	97.52
PRK09435	332	membrane ATPase/protein kinase; Provisional	97.52
KOG1145|consensus	683		97.52
PRK00007	693	elongation factor G; Reviewed	97.51
COG1100	219	GTPase SAR1 and related small G proteins [General	97.51
PRK10512	614	selenocysteinyl-tRNA-specific translation factor;	97.5
KOG0073|consensus	185		97.5
KOG0094|consensus	221		97.49
COG5256	428	TEF1 Translation elongation factor EF-1alpha (GTPa	97.48
PF00025	175	Arf: ADP-ribosylation factor family The prints ent	97.47
PLN00043	447	elongation factor 1-alpha; Provisional	97.47
cd04121	189	Rab40 Rab40 subfamily. This subfamily contains Rab	97.46
cd04129	187	Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that	97.45
PRK13351	687	elongation factor G; Reviewed	97.45
KOG0072|consensus	182		97.44
PRK00741	526	prfC peptide chain release factor 3; Provisional	97.44
PRK04004	586	translation initiation factor IF-2; Validated	97.44
cd04172	182	Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE	97.43
cd04173	222	Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a memb	97.43
cd04128	182	Spg1 Spg1p. Spg1p (septum-promoting GTPase) was fi	97.42
KOG0092|consensus	200		97.41
COG0370	653	FeoB Fe2+ transport system protein B [Inorganic io	97.41
PF00071	162	Ras: Ras family; InterPro: IPR001806 Small GTPases	97.41
TIGR01393	595	lepA GTP-binding protein LepA. LepA (GUF1 in Sacca	97.41
cd04120	202	Rab12 Rab12 subfamily. Rab12 was first identified	97.39
cd04133	176	Rop_like Rop subfamily. The Rop (Rho-related prote	97.39
COG0481	603	LepA Membrane GTPase LepA [Cell envelope biogenesi	97.39
KOG0076|consensus	197		97.36
PRK10218	607	GTP-binding protein; Provisional	97.36
cd04174	232	Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a memb	97.34
cd01885	222	EF2 EF2 (for archaea and eukarya). Translocation r	97.32
cd01875	191	RhoG RhoG subfamily. RhoG is a GTPase with high se	97.32
KOG0073|consensus	185		97.31
cd04173	222	Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a memb	97.29
PRK00741	526	prfC peptide chain release factor 3; Provisional	97.29
TIGR00073	207	hypB hydrogenase accessory protein HypB. HypB is i	97.28
TIGR02034	406	CysN sulfate adenylyltransferase, large subunit. H	97.26
KOG3859|consensus	406		97.26
PF00071	162	Ras: Ras family; InterPro: IPR001806 Small GTPases	97.25
cd04167	213	Snu114p Snu114p subfamily. Snu114p is one of sever	97.24
KOG0084|consensus	205		97.24
PRK12740	668	elongation factor G; Reviewed	97.22
cd04102	202	RabL3 RabL3 (Rab-like3) subfamily. RabL3s are nove	97.22
PTZ00132	215	GTP-binding nuclear protein Ran; Provisional	97.21
COG1217	603	TypA Predicted membrane GTPase involved in stress	97.21
COG1163	365	DRG Predicted GTPase [General function prediction	97.2
PRK13351	687	elongation factor G; Reviewed	97.19
TIGR00101	199	ureG urease accessory protein UreG. This model rep	97.15
KOG0461|consensus	522		97.13
TIGR01394	594	TypA_BipA GTP-binding protein TypA/BipA. This bact	97.11
PRK09866	741	hypothetical protein; Provisional	97.1
TIGR00503	527	prfC peptide chain release factor 3. This translat	97.1
cd01888	203	eIF2_gamma eIF2-gamma (gamma subunit of initiation	97.06
cd04169	267	RF3 RF3 subfamily. Peptide chain release factor 3	97.05
KOG1532|consensus	366		97.05
TIGR00484	689	EF-G translation elongation factor EF-G. After pep	97.03
smart00053	240	DYNc Dynamin, GTPase. Large GTPases that mediate v	97.02
cd04103	158	Centaurin_gamma Centaurin gamma. The centaurins (a	97.01
PF09439	181	SRPRB: Signal recognition particle receptor beta s	97.0

>PRK09563 rbgA GTPase YlqF; Reviewed

Probab=100.00  E-value=3.8e-47  Score=350.89  Aligned_cols=273  Identities=28%  Similarity=0.484  Sum_probs=233.9

Q ss_pred             ChhHHHHHHHHhhccCEEEEEEcCCCCCCCcCHHHHHHHhCCCCEEEEEEcccCCCccchHHHHHHHHhhcCCCCcEEEe
Q psy15351          1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHESLIEEKVRKEQSHISEVIFT   80 (352)
Q Consensus         1 m~~~~~~~~~~i~~aD~vl~VvDar~p~~~~~~~l~~~l~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~v~~i   80 (352)
                      |+|+++++++.+++||+||+|+|+|.|+++.++.+.+++ .++|+++|+||+||+++.....|.+++++.+..   ++++
T Consensus        11 m~k~~~~l~~~l~~aDvIL~VvDar~p~~~~~~~l~~~~-~~kp~iiVlNK~DL~~~~~~~~~~~~~~~~~~~---vi~v   86 (287)
T PRK09563         11 MAKARREIKENLKLVDVVIEVLDARIPLSSENPMIDKII-GNKPRLLILNKSDLADPEVTKKWIEYFEEQGIK---ALAI   86 (287)
T ss_pred             HHHHHHHHHHHhhhCCEEEEEEECCCCCCCCChhHHHHh-CCCCEEEEEEchhcCCHHHHHHHHHHHHHcCCe---EEEE
Confidence            899999999999999999999999999999999888877 589999999999998776567888888655544   8999


Q ss_pred             ecCCCCCCCHHHHHHHHHHHhhhccccccccccceeEEEeccCCCCchhHHHHHhhhhcccCCCCCCCcchhhhhccccc
Q psy15351         81 NCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTR  160 (352)
Q Consensus        81 Sa~~~~~~gi~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~nvgksslin~l~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (352)
                      ||+++  .|+++|++.+.+++++...+                          .+                         
T Consensus        87 Sa~~~--~gi~~L~~~l~~~l~~~~~~--------------------------~~-------------------------  113 (287)
T PRK09563         87 NAKKG--QGVKKILKAAKKLLKEKNER--------------------------RK-------------------------  113 (287)
T ss_pred             ECCCc--ccHHHHHHHHHHHHHHHHhh--------------------------hh-------------------------
Confidence            99999  99999999988877642100                          00                         


Q ss_pred             cccccCcceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCCcEEEEeCCCCCCCCCCCHH
Q psy15351        161 YHRTEVYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE  240 (352)
Q Consensus       161 ~~~~~~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~~~~~~~~~  240 (352)
                      ........++++++|.|||||||+||+|.+     .+.+.+++.||+|++.+ .+..  +.+++++||||+..+...+.+
T Consensus       114 ~~~~~~~~~~~~~~G~pnvGKSsliN~l~~-----~~~~~~~~~~g~T~~~~-~~~~--~~~~~l~DtPGi~~~~~~~~~  185 (287)
T PRK09563        114 AKGMRPRAIRAMIIGIPNVGKSTLINRLAG-----KKIAKTGNRPGVTKAQQ-WIKL--GKGLELLDTPGILWPKLEDQE  185 (287)
T ss_pred             hcccCcCceEEEEECCCCCCHHHHHHHHhc-----CCccccCCCCCeEEEEE-EEEe--CCcEEEEECCCcCCCCCCcHH
Confidence            000113568999999999999999999997     56678999999999986 4444  346999999999999888888


Q ss_pred             HHHHHHHHhhhhhhccchhhhhHhHHhhhcCCCCCcccccccCCCCCccHHHHHHHHHHHhccccccccccCCcccCCCC
Q psy15351        241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIKKKWFKRAFDVSSNSVRMFPD  320 (352)
Q Consensus       241 ~~~~l~~~~~i~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~a~~~g~~~~~~~~~~g~~~~~~d  320 (352)
                      .+.++++++++.+..++...++++++..+++..+..+...|+++.+.+++.++|+.+|+++|++.++         |.||
T Consensus       186 ~~~~l~~~~~i~~~~~~~~~~~~~ll~~l~~~~~~~l~~~y~~~~~~~~~~~~l~~~a~~~g~~~k~---------g~~D  256 (287)
T PRK09563        186 VGLKLALTGAIKDEALDLEEVAIFALEYLSKHYPERLKERYKLDELPEDILELLEAIARKRGALRKG---------GEID  256 (287)
T ss_pred             HHHHHHHhCCcchhhcChHHHHHHHHHHHHhhCHHHHHHHhCCCCCCCCHHHHHHHHHHHhCccccC---------CccC
Confidence            8899999999999999999999999999998877778889999877678999999999999998764         6899


Q ss_pred             HHHHHHHHHHHHhCCCCcceecCcccc
Q psy15351        321 TGEVARIFIEHFRKGSFGSVMLDRDFL  347 (352)
Q Consensus       321 ~~~a~~~~l~~~~~g~l~~~~~~~~~~  347 (352)
                      +.+||+.+|++|++|+||++++|.++.
T Consensus       257 ~~~aa~~~l~d~~~Gklg~~~ld~~~~  283 (287)
T PRK09563        257 YERASELLLNEFRNGKLGKITLETPEM  283 (287)
T ss_pred             HHHHHHHHHHHHHcCCCCcEEccCCcc
Confidence            999999999999999999999998864

>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF

Probab=100.00  E-value=1.7e-46  Score=344.78  Aligned_cols=269  Identities=32%  Similarity=0.510  Sum_probs=231.1

Q ss_pred             ChhHHHHHHHHhhccCEEEEEEcCCCCCCCcCHHHHHHHhCCCCEEEEEEcccCCCccchHHHHHHHHhhcCCCCcEEEe
Q psy15351          1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHESLIEEKVRKEQSHISEVIFT   80 (352)
Q Consensus         1 m~~~~~~~~~~i~~aD~vl~VvDar~p~~~~~~~l~~~l~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~v~~i   80 (352)
                      |+|+++++++.+++||+||+|+|+|.|+++.++.+.+++ .++|+++|+||+|+++++....|.+++++.+.   +++++
T Consensus         8 m~k~~~~~~~~l~~aDvVl~V~Dar~p~~~~~~~i~~~l-~~kp~IiVlNK~DL~~~~~~~~~~~~~~~~~~---~vi~i   83 (276)
T TIGR03596         8 MAKARREIKEKLKLVDVVIEVLDARIPLSSRNPMIDEIR-GNKPRLIVLNKADLADPAVTKQWLKYFEEKGI---KALAI   83 (276)
T ss_pred             HHHHHHHHHHHHhhCCEEEEEEeCCCCCCCCChhHHHHH-CCCCEEEEEEccccCCHHHHHHHHHHHHHcCC---eEEEE
Confidence            899999999999999999999999999999999888887 57999999999999877656788888865444   48999


Q ss_pred             ecCCCCCCCHHHHHHHHHHHhhhccccccccccceeEEEeccCCCCchhHHHHHhhhhcccCCCCCCCcchhhhhccccc
Q psy15351         81 NCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTR  160 (352)
Q Consensus        81 Sa~~~~~~gi~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~nvgksslin~l~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (352)
                      ||+++  .|+++|++.+.+++++....                          .+                         
T Consensus        84 Sa~~~--~gi~~L~~~i~~~~~~~~~~--------------------------~~-------------------------  110 (276)
T TIGR03596        84 NAKKG--KGVKKIIKAAKKLLKEKNEK--------------------------LK-------------------------  110 (276)
T ss_pred             ECCCc--ccHHHHHHHHHHHHHHhhhh--------------------------hh-------------------------
Confidence            99999  99999999998877642100                          00                         


Q ss_pred             cccccCcceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCCcEEEEeCCCCCCCCCCCHH
Q psy15351        161 YHRTEVYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE  240 (352)
Q Consensus       161 ~~~~~~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~~~~~~~~~  240 (352)
                      ........++++++|+||||||||||+|.+     .+.+.+++.||+|+..+ .+...  ..++++||||+..+...+.+
T Consensus       111 ~~~~~~~~~~~~~vG~~nvGKSslin~l~~-----~~~~~~~~~~g~T~~~~-~~~~~--~~~~l~DtPG~~~~~~~~~~  182 (276)
T TIGR03596       111 AKGLKNRPIRAMIVGIPNVGKSTLINRLAG-----KKVAKVGNRPGVTKGQQ-WIKLS--DGLELLDTPGILWPKFEDQE  182 (276)
T ss_pred             hccCCCCCeEEEEECCCCCCHHHHHHHHhC-----CCccccCCCCCeecceE-EEEeC--CCEEEEECCCcccCCCCchH
Confidence            000013468999999999999999999997     56678899999999976 45443  36899999999999888888


Q ss_pred             HHHHHHHHhhhhhhccchhhhhHhHHhhhcCCCCCcccccccCCCCCccHHHHHHHHHHHhccccccccccCCcccCCCC
Q psy15351        241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIKKKWFKRAFDVSSNSVRMFPD  320 (352)
Q Consensus       241 ~~~~l~~~~~i~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~a~~~g~~~~~~~~~~g~~~~~~d  320 (352)
                      .+.++++++.+++..++...++++++..+++.....+...|+++.+.+++.++|+.+|+++|++.++         |.||
T Consensus       183 ~~~~l~~~g~i~~~~~~~~~~~~~~~~~l~~~~~~~l~~~y~i~~~~~~~~~~l~~~a~~~g~~~k~---------g~~D  253 (276)
T TIGR03596       183 VGLKLAATGAIKDEALDLEDVALFLLEYLLEHYPERLKERYKLDELPEDIVELLEAIAKKRGCLLKG---------GELD  253 (276)
T ss_pred             HHHHHHHhCCcccccCChHHHHHHHHHHHHhhCHHHHHHHhCcCCCCCCHHHHHHHHHHHhCccccC---------CccC
Confidence            8999999999999999999999999999999877778889999877778999999999999998764         6899


Q ss_pred             HHHHHHHHHHHHhCCCCcceecC
Q psy15351        321 TGEVARIFIEHFRKGSFGSVMLD  343 (352)
Q Consensus       321 ~~~a~~~~l~~~~~g~l~~~~~~  343 (352)
                      +++||+.+|++|++|+||+++||
T Consensus       254 ~~~aa~~~l~d~~~Gklg~~~ld  276 (276)
T TIGR03596       254 LDRAAEILLNDFRKGKLGRITLE  276 (276)
T ss_pred             HHHHHHHHHHHHHcCCCCceecC
Confidence            99999999999999999999987

Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.

>KOG2485|consensus

Probab=100.00  E-value=9.9e-42  Score=303.72  Aligned_cols=289  Identities=39%  Similarity=0.641  Sum_probs=241.8

Q ss_pred             ChhHHHHHHHHhhccCEEEEEEcCCCCCCCcCHHHHHHHhCCCCEEEEEEcccCCCccchHHHHHHHHhhcCCCCcEEEe
Q psy15351          1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHESLIEEKVRKEQSHISEVIFT   80 (352)
Q Consensus         1 m~~~~~~~~~~i~~aD~vl~VvDar~p~~~~~~~l~~~l~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~v~~i   80 (352)
                      |+||++++++.+..+|+||+|.|||.|++++++.+.+++ ..+|.|+|+||+||+++.+....+++++..+..  .+++.
T Consensus        33 makalr~i~~~l~~~D~iiEvrDaRiPLssrn~~~~~~~-~~k~riiVlNK~DLad~~~~k~~iq~~~~~~~~--~~~~~  109 (335)
T KOG2485|consen   33 MAKALRAIQNRLPLVDCIIEVRDARIPLSSRNELFQDFL-PPKPRIIVLNKMDLADPKEQKKIIQYLEWQNLE--SYIKL  109 (335)
T ss_pred             HHHHHHHHHhhcccccEEEEeeccccCCccccHHHHHhc-CCCceEEEEecccccCchhhhHHHHHHHhhccc--chhhh
Confidence            899999999999999999999999999999999999988 589999999999999977777888888666443  46666


Q ss_pred             ecCCCCCCCHHHHHHHHHHHhhhccccccccccceeEEEeccCCCCchhHHHHHhhhhcccCCCCCCCcchhhhhccccc
Q psy15351         81 NCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTR  160 (352)
Q Consensus        81 Sa~~~~~~gi~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~nvgksslin~l~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (352)
                      +|......++..++..+.....+                                                      ..+
T Consensus       110 ~c~~~~~~~v~~l~~il~~~~~~------------------------------------------------------l~r  135 (335)
T KOG2485|consen  110 DCNKDCNKQVSPLLKILTILSEE------------------------------------------------------LVR  135 (335)
T ss_pred             hhhhhhhhccccHHHHHHHHHHH------------------------------------------------------HHH
Confidence            66554112244444433322211                                                      123


Q ss_pred             cccccCcceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCCcEEEEeCCCCCCCCCCCHH
Q psy15351        161 YHRTEVYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE  240 (352)
Q Consensus       161 ~~~~~~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~~~~~~~~~  240 (352)
                      ..++.+....++|+|.||||||||||++...++.+.+.+++|+.||.|+..+..+.+...+.++++||||+..|...+.+
T Consensus       136 ~irt~~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~iri~~rp~vy~iDTPGil~P~I~~~e  215 (335)
T KOG2485|consen  136 FIRTLNSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSERIRISHRPPVYLIDTPGILVPSIVDVE  215 (335)
T ss_pred             hhcccCCceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhheEeccCCceEEecCCCcCCCCCCCHH
Confidence            34445678899999999999999999999988888899999999999999988889998889999999999999999999


Q ss_pred             HHHHHHHHhhhhhhccchhhhhHhHHhhhcCCCCCcccccccCCC-CCccHHHHHHHHHHHhccccccccccCCc--ccC
Q psy15351        241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDE-PSDDIVMLLAKAAIKKKWFKRAFDVSSNS--VRM  317 (352)
Q Consensus       241 ~~~~l~~~~~i~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~l~~-~~~~~~~~l~~~a~~~g~~~~~~~~~~g~--~~~  317 (352)
                      .+++||+|+.+.++.++++.++||+++++|....+.+...++... +.++++..+..++.++.+..+.+++. |.  ...
T Consensus       216 ~~lKLAL~g~Vkd~~V~~~~~adylL~~lN~~~~~~y~~~l~~~~~~~dd~~~nl~~l~v~~~~~~k~s~fd-g~~~~ei  294 (335)
T KOG2485|consen  216 DGLKLALCGLVKDHLVGEETIADYLLYLLNSHSDFSYVKDLKPGSTPADDIEQNLAVLAVRRTKNEKVSAFD-GNNKLEI  294 (335)
T ss_pred             HhhhhhhcccccccccCHHHHHHHHHHHHhccCcchhHHHhccCCCccccHHHHHHHHHHHHHhcceeeEec-CCceeEE
Confidence            999999999999999999999999999999999888888777665 88899999999999999999999888 32  222


Q ss_pred             C-CCHHHHHHHHHHHHhCCCCcceecCcccc
Q psy15351        318 F-PDTGEVARIFIEHFRKGSFGSVMLDRDFL  347 (352)
Q Consensus       318 ~-~d~~~a~~~~l~~~~~g~l~~~~~~~~~~  347 (352)
                      . |.+-++++.++.-|++|.++...++-+.+
T Consensus       295 ~~~~~ln~~e~~l~~~rsg~l~~~~ln~~~~  325 (335)
T KOG2485|consen  295 EQPNLLNLARFFLATFRSGLLGPEELNYVIL  325 (335)
T ss_pred             echHHHHHHHHHHHHHHhccccceeecchhh
Confidence            2 35789999999999999999776654443

>KOG2484|consensus

Probab=100.00  E-value=6.1e-41  Score=306.65  Aligned_cols=266  Identities=27%  Similarity=0.362  Sum_probs=207.9

Q ss_pred             HHHHHHHhhccCEEEEEEcCCCCCCCcCHHHHHHHh---CCCCEEEEEEcccCCCccchHHHHHHHHhhcCCCCcEEEee
Q psy15351          5 LKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQ---NIRPMVLVLNKRDLINSKHESLIEEKVRKEQSHISEVIFTN   81 (352)
Q Consensus         5 ~~~~~~~i~~aD~vl~VvDar~p~~~~~~~l~~~l~---~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~v~~iS   81 (352)
                      .+.++++++.+|+||+|+|||+|+++++++.++++.   ++|.+|+|+||+||+|.+.++.|+.||++.+..   |.|.+
T Consensus       137 ~ke~rkvve~sDVVleVlDARDPlgtR~~~vE~~V~~~~gnKkLILVLNK~DLVPrEv~e~Wl~YLr~~~pt---v~fka  213 (435)
T KOG2484|consen  137 DKEFRKVVEASDVVLEVLDARDPLGTRCPEVEEAVLQAHGNKKLILVLNKIDLVPREVVEKWLVYLRREGPT---VAFKA  213 (435)
T ss_pred             HHHHHHHHhhhheEEEeeeccCCCCCCChhHHHHHHhccCCceEEEEeehhccCCHHHHHHHHHHHHhhCCc---ceeec
Confidence            455889999999999999999999999999998773   459999999999999999999999999988876   77776


Q ss_pred             cCCCCCCCHHHHHHHHHHHhhhccccccccccceeEEEeccCCCCchhHHHHHhhhhcccCCCCCCCcchhhhhcccccc
Q psy15351         82 CRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRY  161 (352)
Q Consensus        82 a~~~~~~gi~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~nvgksslin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (352)
                      +...  .+..      ...                  +-+....|+++++..|...-.                      
T Consensus       214 st~~--~~~~------~~~------------------~~~s~c~gae~l~~~lgny~~----------------------  245 (435)
T KOG2484|consen  214 STQM--QNSN------SKN------------------LQSSVCFGAETLMKVLGNYCR----------------------  245 (435)
T ss_pred             cccc--cccc------ccc------------------cccchhhhHHHHHHHhcCccc----------------------
Confidence            6554  2211      000                  011224688888877763211                      


Q ss_pred             ccccCcceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCCcEEEEeCCCCCCCCCCCHHH
Q psy15351        162 HRTEVYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLEC  241 (352)
Q Consensus       162 ~~~~~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~~~~~~~~~~  241 (352)
                      ...-+..+++||+|+|||||||+||+|..     ++.+.+|+.||.|+..|. +..  +..+.|+|+||++.+...+.+ 
T Consensus       246 ~~~lk~sIrvGViG~PNVGKSSvINsL~~-----~k~C~vg~~pGvT~smqe-V~L--dk~i~llDsPgiv~~~~~~~~-  316 (435)
T KOG2484|consen  246 KGELKTSIRVGIIGYPNVGKSSVINSLKR-----RKACNVGNVPGVTRSMQE-VKL--DKKIRLLDSPGIVPPSIDEKD-  316 (435)
T ss_pred             ccccCcceEeeeecCCCCChhHHHHHHHH-----hccccCCCCccchhhhhh-eec--cCCceeccCCceeecCCCccc-
Confidence            11124679999999999999999999997     677899999999999874 433  557999999999998776555 


Q ss_pred             HHHHHHHhhhhh-hccchhhhhHhHHhhhcCCCCCcccccccCCCCCccHHHHHHHHHHHhccccccccccCCcccCCCC
Q psy15351        242 GMRLAACATLQD-HLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIKKKWFKRAFDVSSNSVRMFPD  320 (352)
Q Consensus       242 ~~~l~~~~~i~~-~~~~~~~~~~~il~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~a~~~g~~~~~~~~~~g~~~~~~d  320 (352)
                        .+++.+++.. .+.++...+.+||..+++.   .+..+|+++... ...+||..+|+++|.+.++         |+||
T Consensus       317 --~~~Lrn~~~i~~~~dp~~~v~~iL~~~~~e---~~~~~Y~~~~~~-~~~~Fl~~~ar~~G~~~kG---------G~pd  381 (435)
T KOG2484|consen  317 --ALALRNCIPIGKVADPVTPVSCILKRCSKE---SRSVLYNIPSIR-ATDDFLEKFARRRGLLLKG---------GIPD  381 (435)
T ss_pred             --hhhhhcccccccccCccchHHHHHHHhhHH---HHHHHhcCCCcc-hHHHHHHHHHHHHhhhhcC---------CCCc
Confidence              3344444443 2445666677888777763   346788887653 4679999999999998875         7999


Q ss_pred             HHHHHHHHHHHHhCCCCcceecCcc
Q psy15351        321 TGEVARIFIEHFRKGSFGSVMLDRD  345 (352)
Q Consensus       321 ~~~a~~~~l~~~~~g~l~~~~~~~~  345 (352)
                      +..||..+++||++|+|+||++||+
T Consensus       382 ~~~AA~~vl~Dw~~Gki~y~~~pp~  406 (435)
T KOG2484|consen  382 VNAAAFAVLNDWRTGKIGYYTLPPT  406 (435)
T ss_pred             HHHHHHHHHHhhccCceeeeeCCCh
Confidence            9999999999999999999999987

>COG1161 Predicted GTPases [General function prediction only]

Probab=100.00  E-value=3.1e-38  Score=294.78  Aligned_cols=272  Identities=29%  Similarity=0.419  Sum_probs=214.3

Q ss_pred             ChhHHHHHHHHhhccCEEEEEEcCCCCCCCcCHHHHHHHhCCCCEEEEEEcccCCCccchHHHHHHHHhh-cCCCCcEEE
Q psy15351          1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHESLIEEKVRKE-QSHISEVIF   79 (352)
Q Consensus         1 m~~~~~~~~~~i~~aD~vl~VvDar~p~~~~~~~l~~~l~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~-~~~~~~v~~   79 (352)
                      |.+++++..+.++.+|+|++|+|||+|.+++++.+.+++ .+++.++|+||+||++....+.|.+++.+. +..   .++
T Consensus        21 ~~k~~~~~~~~~~~~d~vvevvDar~P~~s~~~~l~~~v-~~k~~i~vlNK~DL~~~~~~~~W~~~~~~~~~~~---~~~   96 (322)
T COG1161          21 MKKAKRQLKEVLKSVDVVVEVVDARDPLGTRNPELERIV-KEKPKLLVLNKADLAPKEVTKKWKKYFKKEEGIK---PIF   96 (322)
T ss_pred             hHHHHHHHHHhcccCCEEEEEEeccccccccCccHHHHH-ccCCcEEEEehhhcCCHHHHHHHHHHHHhcCCCc---cEE
Confidence            889999999999999999999999999999999999998 577889999999999999999999999877 343   788


Q ss_pred             eecCCCCCCCHHHHHHHHHHHhhhccccccccccceeEEEeccCCCCchhHHHHHhhhhcccCCCCCCCcchhhhhcccc
Q psy15351         80 TNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMT  159 (352)
Q Consensus        80 iSa~~~~~~gi~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~nvgksslin~l~~~~~~~~~~~~~~~~~~~~~~~~~  159 (352)
                      +|+..+  .+...+..++..+.+.                          .++.++..                      
T Consensus        97 v~~~~~--~~~~~i~~~~~~~~~~--------------------------~i~~~~~~----------------------  126 (322)
T COG1161          97 VSAKSR--QGGKKIRKALEKLSEE--------------------------KIKRLKKK----------------------  126 (322)
T ss_pred             EEeecc--cCccchHHHHHHHHHH--------------------------HHHHHhhc----------------------
Confidence            999998  8888887665544321                          11111110                      


Q ss_pred             ccccccCcceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCCcEEEEeCCCCCCCCCCC-
Q psy15351        160 RYHRTEVYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDN-  238 (352)
Q Consensus       160 ~~~~~~~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~~~~~~~-  238 (352)
                         .......+++++|+|||||||+||+|.+     ++.+.+|+.||+|++.| .+.+..  .++|+||||++++...+ 
T Consensus       127 ---~~~~~~~~v~vvG~PNVGKSslIN~L~~-----k~~~~~s~~PG~Tk~~q-~i~~~~--~i~LlDtPGii~~~~~~~  195 (322)
T COG1161         127 ---GLLKRKIRVGVVGYPNVGKSTLINRLLG-----KKVAKTSNRPGTTKGIQ-WIKLDD--GIYLLDTPGIIPPKFDDD  195 (322)
T ss_pred             ---CCCccceEEEEEcCCCCcHHHHHHHHhc-----ccceeeCCCCceecceE-EEEcCC--CeEEecCCCcCCCCccch
Confidence               0123568899999999999999999998     67799999999999986 455443  59999999999998777 


Q ss_pred             HHHHHHHHHHhhhhhhccchhhhhHhHHhhh--cCCCCCcccc-cccCCC-CCccHHHHHHHHHHHhccccccccccCCc
Q psy15351        239 LECGMRLAACATLQDHLVGEINIADYILFYL--NRTGNYRYVD-FFNLDE-PSDDIVMLLAKAAIKKKWFKRAFDVSSNS  314 (352)
Q Consensus       239 ~~~~~~l~~~~~i~~~~~~~~~~~~~il~~~--~~~~~~~~~~-~~~l~~-~~~~~~~~l~~~a~~~g~~~~~~~~~~g~  314 (352)
                      .....+++..+.+.+.+.+...++..++..+  +......+.. .|...+ ...+..+++..+|.++|+....       
T Consensus       196 ~~v~~~l~~~~~Ik~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~l~~~a~~rg~~l~~-------  268 (322)
T COG1161         196 ELVLLKLAPKGEIKDPVLPADEVAERLLGGLLIDEHYGEKLNITRYESNPIHRTDPEEFLELIAKKRGWLLLK-------  268 (322)
T ss_pred             HHHhhccccccccCccccChHHHHHHHHhhhhhhhhhhHhhCCcccccccccccCHHHHHHHHHHHhhhhhcC-------
Confidence            6666777788889998888888877776555  3333222222 343322 1225788999999999954322       


Q ss_pred             ccCCCCHHHHHHHHHHHHhCCCCcceecCcc
Q psy15351        315 VRMFPDTGEVARIFIEHFRKGSFGSVMLDRD  345 (352)
Q Consensus       315 ~~~~~d~~~a~~~~l~~~~~g~l~~~~~~~~  345 (352)
                       ++.+|+.+|+..+++||+.|+||++++|++
T Consensus       269 -~g~~d~~~~~~~~~~d~~~gklg~~~~~~~  298 (322)
T COG1161         269 -GGEPDLERAAETILKDIRNGKLGWFSLEEP  298 (322)
T ss_pred             -CCCccHHHHHHHHHHHHHhCCcceeecCCc
Confidence             257999999999999999999999999975

>KOG1424|consensus

Probab=100.00  E-value=3.3e-38  Score=296.68  Aligned_cols=301  Identities=25%  Similarity=0.295  Sum_probs=190.5

Q ss_pred             hHHHHHHHHhhccCEEEEEEcCCCCCCCcCHHHHHHHh---CCCCEEEEEEcccCCCccchHHHHHHHHhhcCCCCcEEE
Q psy15351          3 RGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQ---NIRPMVLVLNKRDLINSKHESLIEEKVRKEQSHISEVIF   79 (352)
Q Consensus         3 ~~~~~~~~~i~~aD~vl~VvDar~p~~~~~~~l~~~l~---~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~v~~   79 (352)
                      ..|||+|++++.+|+||.|||||+|+..+++++++|++   ..|..++++||+||++++.+..|.+||.+.++.   ++|
T Consensus       163 E~WRQLWRVlErSDivvqIVDARnPllfr~~dLe~Yvke~d~~K~~~LLvNKaDLl~~~qr~aWa~YF~~~ni~---~vf  239 (562)
T KOG1424|consen  163 EIWRQLWRVLERSDIVVQIVDARNPLLFRSPDLEDYVKEVDPSKANVLLVNKADLLPPEQRVAWAEYFRQNNIP---VVF  239 (562)
T ss_pred             HHHHHHHHHHhhcceEEEEeecCCccccCChhHHHHHhccccccceEEEEehhhcCCHHHHHHHHHHHHhcCce---EEE
Confidence            46999999999999999999999999999999999997   457889999999999999999999999988876   999


Q ss_pred             eecCCCC----CCCHHHHHHHHHHHhhhccccccccccceeEEEeccCCCCchhHHHHHhhhhcccCCCCCCCcchhh-h
Q psy15351         80 TNCRNPN----CKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPILPTLQH-I  154 (352)
Q Consensus        80 iSa~~~~----~~gi~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~nvgksslin~l~~~~~~~~~~~~~~~~~~~-~  154 (352)
                      .||....    ..++++-........         ...+  .+++|.-+    -.|..+.      ++...+....++ .
T Consensus       240 ~SA~~at~~~~~~~~~e~~r~~d~~~---------~~~~--~~~~~~~d----~~i~r~~------~d~~e~~~v~~~~~  298 (562)
T KOG1424|consen  240 FSALAATEQLESKVLKEDRRSLDGVS---------RALG--AIFVGEVD----LKIARDK------GDGEEIEDVEQLRL  298 (562)
T ss_pred             Eecccccccccccchhhhhhcccchh---------hhcc--ccccccch----hhhhhhc------ccccchhhHHhhhh
Confidence            9987621    011111111100000         0001  11111111    0111111      000000000000 0


Q ss_pred             hcccccc--ccccCcceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCCcEEEEeCCCCC
Q psy15351        155 SDNMTRY--HRTEVYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGIS  232 (352)
Q Consensus       155 ~~~~~~~--~~~~~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~  232 (352)
                      .+.....  ....+..++||+||+|||||||+||+|.|     .+.+.|+.+||.|++.|+.+ +.  +.+.|+||||++
T Consensus       299 ~s~~~~~~t~~~~~~~vtVG~VGYPNVGKSSTINaLvG-----~KkVsVS~TPGkTKHFQTi~-ls--~~v~LCDCPGLV  370 (562)
T KOG1424|consen  299 ISAMEPTPTGERYKDVVTVGFVGYPNVGKSSTINALVG-----RKKVSVSSTPGKTKHFQTIF-LS--PSVCLCDCPGLV  370 (562)
T ss_pred             hhccccCCCCcCCCceeEEEeecCCCCchhHHHHHHhc-----CceeeeecCCCCcceeEEEE-cC--CCceecCCCCcc
Confidence            0000001  01112359999999999999999999998     78999999999999998644 33  369999999999


Q ss_pred             CCCCCCHHHHHHHH---HHhhhhhhccchhhhhHhHH-hhhcCCCCCcccccccCCCCCccHHHHHHHHHHHhccccccc
Q psy15351        233 LPRIDNLECGMRLA---ACATLQDHLVGEINIADYIL-FYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIKKKWFKRAF  308 (352)
Q Consensus       233 ~~~~~~~~~~~~l~---~~~~i~~~~~~~~~~~~~il-~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~a~~~g~~~~~~  308 (352)
                      +|.+......+-+.   .+..+.++.-+...+|+.|- ++|...+.......++-..|. ...++|..+|..+||+... 
T Consensus       371 fPSf~~~r~emvl~GiLPIDQmrd~~~~~~llaerIP~~~Le~~Y~~k~~e~~~~~~pp-~A~ell~a~a~~RGfmts~-  448 (562)
T KOG1424|consen  371 FPSFSPTRAEMVLNGILPIDQLRDHYGAVGLLAERIPRHVLERLYGHKPREDPEDSRPP-SAAELLNAYAYKRGFMTSK-  448 (562)
T ss_pred             ccCCCchHHHHHHhcCccHHHhhcccchHHHHHHhcCHHHHHHHhCCCcccccCCCCCc-hHHHHHHHHHHhcchhhhc-
Confidence            99887644333221   11223333222222232221 122211100001111222222 2689999999999998643 


Q ss_pred             cccCCcccCCCCHHHHHHHHHHHHhCCCCcceecCcc
Q psy15351        309 DVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDRD  345 (352)
Q Consensus       309 ~~~~g~~~~~~d~~~a~~~~l~~~~~g~l~~~~~~~~  345 (352)
                              +.||..|||+.+|+||.+|+|.++..||-
T Consensus       449 --------~~~D~~RAAr~ILKDyv~GKL~~~~~PPg  477 (562)
T KOG1424|consen  449 --------GLPDEYRAARYILKDYVSGKLLYCFPPPG  477 (562)
T ss_pred             --------cCCcchHHHHHHHHHHhCCeeeeeeCCCC
Confidence                    56799999999999999999999877665

>KOG2423|consensus

Probab=100.00  E-value=6.1e-37  Score=278.97  Aligned_cols=255  Identities=25%  Similarity=0.368  Sum_probs=195.7

Q ss_pred             hHHHHHHHHhhccCEEEEEEcCCCCCCCcCHHHHHHHh---CCCCEEEEEEcccCCCccchHHHHHHHHhhcCCCCcEEE
Q psy15351          3 RGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQ---NIRPMVLVLNKRDLINSKHESLIEEKVRKEQSHISEVIF   79 (352)
Q Consensus         3 ~~~~~~~~~i~~aD~vl~VvDar~p~~~~~~~l~~~l~---~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~v~~   79 (352)
                      +-|-.+.+++..+|+||+|+|||+|+++++..+++|++   ..|.+|+|+||+||+|-.....|+..+.+....   +.|
T Consensus       202 RIW~ELyKViDSSDVvvqVlDARDPmGTrc~~ve~ylkke~phKHli~vLNKvDLVPtwvt~~Wv~~lSkeyPT---iAf  278 (572)
T KOG2423|consen  202 RIWGELYKVIDSSDVVVQVLDARDPMGTRCKHVEEYLKKEKPHKHLIYVLNKVDLVPTWVTAKWVRHLSKEYPT---IAF  278 (572)
T ss_pred             HHHHHHHHhhcccceeEEeeeccCCcccccHHHHHHHhhcCCcceeEEEeeccccccHHHHHHHHHHHhhhCcc---eee
Confidence            56778889999999999999999999999999999998   567899999999999999999999999765443   444


Q ss_pred             eecCCCCCCCHHHHHHHHHHHhhhccccccccccceeEEEeccCCCCchhHHHHHhhhhcccCCCCCCCcchhhhhcccc
Q psy15351         80 TNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMT  159 (352)
Q Consensus        80 iSa~~~~~~gi~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~nvgksslin~l~~~~~~~~~~~~~~~~~~~~~~~~~  159 (352)
                      .++.++                                      ++||.++|+.|+.-..                    
T Consensus       279 HAsi~n--------------------------------------sfGKgalI~llRQf~k--------------------  300 (572)
T KOG2423|consen  279 HASINN--------------------------------------SFGKGALIQLLRQFAK--------------------  300 (572)
T ss_pred             ehhhcC--------------------------------------ccchhHHHHHHHHHHh--------------------
Confidence            333332                                      3567777777664321                    


Q ss_pred             ccccccCcceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCCcEEEEeCCCCCCCCCCCH
Q psy15351        160 RYHRTEVYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNL  239 (352)
Q Consensus       160 ~~~~~~~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~~~~~~~~  239 (352)
                       ++ .....+.|+++|+|||||||+||+|+.     ++++.+.+.||-|+-.|. +.+  -++++||||||++.|...+.
T Consensus       301 -Lh-~dkkqISVGfiGYPNvGKSSiINTLR~-----KkVCkvAPIpGETKVWQY-ItL--mkrIfLIDcPGvVyps~dse  370 (572)
T KOG2423|consen  301 -LH-SDKKQISVGFIGYPNVGKSSIINTLRK-----KKVCKVAPIPGETKVWQY-ITL--MKRIFLIDCPGVVYPSSDSE  370 (572)
T ss_pred             -hc-cCccceeeeeecCCCCchHHHHHHHhh-----cccccccCCCCcchHHHH-HHH--HhceeEecCCCccCCCCCch
Confidence             11 134678999999999999999999997     789999999999998763 222  34699999999999865332


Q ss_pred             HHHHHHHHHhhhh-hhccchhhhhHhHHhhhcCCCCCcccccccCCCCCccHHHHHHHHHHHhccccccccccCCcccCC
Q psy15351        240 ECGMRLAACATLQ-DHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIKKKWFKRAFDVSSNSVRMF  318 (352)
Q Consensus       240 ~~~~~l~~~~~i~-~~~~~~~~~~~~il~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~a~~~g~~~~~~~~~~g~~~~~  318 (352)
                      .. .  .+-+.++ +++..++..++.+|   .+.....+...|.++.+.+ ..+||+.+|.+.|.+.++         |-
T Consensus       371 t~-i--vLkGvVRVenv~~pe~yi~~vl---~R~k~ehl~rtYkI~~w~d-~~dfle~La~k~GkLlKG---------GE  434 (572)
T KOG2423|consen  371 TD-I--VLKGVVRVENVKNPEDYIDGVL---ERCKPEHLSRTYKISGWND-STDFLEKLAIKQGKLLKG---------GE  434 (572)
T ss_pred             HH-H--HhhceeeeeecCCHHHHHHHHH---HhhhHHHHHhhhCCCcccc-HHHHHHHHHHHhCccccC---------CC
Confidence            22 1  1233333 24445655555554   4443334466788877644 789999999999999876         68


Q ss_pred             CCHHHHHHHHHHHHhCCCCcceecCc
Q psy15351        319 PDTGEVARIFIEHFRKGSFGSVMLDR  344 (352)
Q Consensus       319 ~d~~~a~~~~l~~~~~g~l~~~~~~~  344 (352)
                      ||+...++++|+||+.|+|++|..||
T Consensus       435 Pd~~~vsKmvLnDwqRGkiP~FVpPp  460 (572)
T KOG2423|consen  435 PDLVVVSKMVLNDWQRGKIPFFVPPP  460 (572)
T ss_pred             CchhHHHHHHhhHhhcCCCceecCCC
Confidence            99999999999999999999997776

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.97  E-value=8.7e-31  Score=246.11  Aligned_cols=269  Identities=19%  Similarity=0.191  Sum_probs=186.6

Q ss_pred             hHHHHHHHHhhccCEEEEEEcCCCCCCCcCHHHHHHHh-CCCCEEEEEEcccCCCccchHHHHHHHHhhcCCCCcEEEee
Q psy15351          3 RGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQ-NIRPMVLVLNKRDLINSKHESLIEEKVRKEQSHISEVIFTN   81 (352)
Q Consensus         3 ~~~~~~~~~i~~aD~vl~VvDar~p~~~~~~~l~~~l~-~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~v~~iS   81 (352)
                      +-.+|+..++++||++|||+|++.+++..+..+.++++ .++|+++|+||+|-...+  ....+++ +.|..  +++++|
T Consensus        72 ~i~~Qa~~Ai~eADvilfvVD~~~Git~~D~~ia~~Lr~~~kpviLvvNK~D~~~~e--~~~~efy-slG~g--~~~~IS  146 (444)
T COG1160          72 LIREQALIAIEEADVILFVVDGREGITPADEEIAKILRRSKKPVILVVNKIDNLKAE--ELAYEFY-SLGFG--EPVPIS  146 (444)
T ss_pred             HHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEEcccCchhh--hhHHHHH-hcCCC--CceEee
Confidence            45678999999999999999999999999999999887 669999999999976333  3334444 56655  799999


Q ss_pred             cCCCCCCCHHHHHHHHHHHhhhccccccccccceeEEEeccCCCCchhHHHHHhhhhcccCCCCCCCcchhhhhcccccc
Q psy15351         82 CRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRY  161 (352)
Q Consensus        82 a~~~~~~gi~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~nvgksslin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (352)
                      |.++  .|+.+|++.+.+.++ ..+..                                                    .
T Consensus       147 A~Hg--~Gi~dLld~v~~~l~-~~e~~----------------------------------------------------~  171 (444)
T COG1160         147 AEHG--RGIGDLLDAVLELLP-PDEEE----------------------------------------------------E  171 (444)
T ss_pred             hhhc--cCHHHHHHHHHhhcC-Ccccc----------------------------------------------------c
Confidence            9999  999999999998875 22100                                                    0


Q ss_pred             ccccCcceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCCcEEEEeCCCCCCCCCCCHHH
Q psy15351        162 HRTEVYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLEC  241 (352)
Q Consensus       162 ~~~~~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~~~~~~~~~~  241 (352)
                      ......+++++++|.||||||||+|+|++     +..+.+++.|||||+.+......+++.+.++||.|+........ .
T Consensus       172 ~~~~~~~ikiaiiGrPNvGKSsLiN~ilg-----eeR~Iv~~~aGTTRD~I~~~~e~~~~~~~liDTAGiRrk~ki~e-~  245 (444)
T COG1160         172 EEEETDPIKIAIIGRPNVGKSSLINAILG-----EERVIVSDIAGTTRDSIDIEFERDGRKYVLIDTAGIRRKGKITE-S  245 (444)
T ss_pred             ccccCCceEEEEEeCCCCCchHHHHHhcc-----CceEEecCCCCccccceeeeEEECCeEEEEEECCCCCccccccc-c
Confidence            00012579999999999999999999998     78899999999999998866667788999999999997632111 0


Q ss_pred             HHHHHHH---hh---------hhhhccc----hhhhhHhHH-------hhhcCCCCCcccccccCCCCCccHHHHHHHHH
Q psy15351        242 GMRLAAC---AT---------LQDHLVG----EINIADYIL-------FYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAA  298 (352)
Q Consensus       242 ~~~l~~~---~~---------i~~~~~~----~~~~~~~il-------~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~a  298 (352)
                      .++.++.   .+         +.|...+    +..++.++.       .++|+|+..+- +..-+.....++...|.++ 
T Consensus       246 ~E~~Sv~rt~~aI~~a~vvllviDa~~~~~~qD~~ia~~i~~~g~~~vIvvNKWDl~~~-~~~~~~~~k~~i~~~l~~l-  323 (444)
T COG1160         246 VEKYSVARTLKAIERADVVLLVIDATEGISEQDLRIAGLIEEAGRGIVIVVNKWDLVEE-DEATMEEFKKKLRRKLPFL-  323 (444)
T ss_pred             eEEEeehhhHhHHhhcCEEEEEEECCCCchHHHHHHHHHHHHcCCCeEEEEEccccCCc-hhhHHHHHHHHHHHHhccc-
Confidence            1111111   11         1121111    233444443       46677764221 0011111122334444444 


Q ss_pred             HHhcccccccccc-CCcccCCCCHHHHHHHHHHHHhCCCCcce
Q psy15351        299 IKKKWFKRAFDVS-SNSVRMFPDTGEVARIFIEHFRKGSFGSV  340 (352)
Q Consensus       299 ~~~g~~~~~~~~~-~g~~~~~~d~~~a~~~~l~~~~~g~l~~~  340 (352)
                       .+.++.++||++ +|....++.+..++..+-+.+.++.|+++
T Consensus       324 -~~a~i~~iSA~~~~~i~~l~~~i~~~~~~~~~ri~Ts~LN~~  365 (444)
T COG1160         324 -DFAPIVFISALTGQGLDKLFEAIKEIYECATRRISTSLLNRV  365 (444)
T ss_pred             -cCCeEEEEEecCCCChHHHHHHHHHHHHHhccccCHHHHHHH
Confidence             355677888888 55555667778888888888888888876

>cd01858 NGP_1 NGP-1

Probab=99.96  E-value=6.2e-29  Score=209.81  Aligned_cols=154  Identities=31%  Similarity=0.462  Sum_probs=124.5

Q ss_pred             HHHHHhhccCEEEEEEcCCCCCCCcCHHHHHHHh---CCCCEEEEEEcccCCCccchHHHHHHHHhhcCCCCcEEEeecC
Q psy15351          7 DIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQ---NIRPMVLVLNKRDLINSKHESLIEEKVRKEQSHISEVIFTNCR   83 (352)
Q Consensus         7 ~~~~~i~~aD~vl~VvDar~p~~~~~~~l~~~l~---~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~v~~iSa~   83 (352)
                      ++|+.++++|+|++|+|+++|+...+..+.+++.   .++|+++|+||+|+++++....|.+++.+.. .+ .++++||+
T Consensus         1 ~~~~~l~~aD~il~VvD~~~p~~~~~~~i~~~l~~~~~~~p~ilVlNKiDl~~~~~~~~~~~~~~~~~-~~-~~~~iSa~   78 (157)
T cd01858           1 ELYKVIDSSDVVIQVLDARDPMGTRCKHVEEYLKKEKPHKHLIFVLNKCDLVPTWVTARWVKILSKEY-PT-IAFHASIN   78 (157)
T ss_pred             ChhHhhhhCCEEEEEEECCCCccccCHHHHHHHHhccCCCCEEEEEEchhcCCHHHHHHHHHHHhcCC-cE-EEEEeecc
Confidence            4789999999999999999998888888888775   2489999999999998776778888886542 21 25789999


Q ss_pred             CCCCCCHHHHHHHHHHHhhhccccccccccceeEEEeccCCCCchhHHHHHhhhhcccCCCCCCCcchhhhhcccccccc
Q psy15351         84 NPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHR  163 (352)
Q Consensus        84 ~~~~~gi~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~nvgksslin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (352)
                      ++  .|+++|++.+.+++...                                                           
T Consensus        79 ~~--~~~~~L~~~l~~~~~~~-----------------------------------------------------------   97 (157)
T cd01858          79 NP--FGKGSLIQLLRQFSKLH-----------------------------------------------------------   97 (157)
T ss_pred             cc--ccHHHHHHHHHHHHhhh-----------------------------------------------------------
Confidence            99  99999999887654210                                                           


Q ss_pred             ccCcceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCCcEEEEeCCCC
Q psy15351        164 TEVYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGI  231 (352)
Q Consensus       164 ~~~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi  231 (352)
                      .....++++++|.||||||||||+|.+     ...+.+++.||+|++.+ .+..  +..++++||||+
T Consensus        98 ~~~~~~~v~~~G~~nvGKStliN~l~~-----~~~~~~~~~~g~T~~~~-~~~~--~~~~~liDtPGi  157 (157)
T cd01858          98 SDKKQISVGFIGYPNVGKSSIINTLRS-----KKVCKVAPIPGETKVWQ-YITL--MKRIYLIDCPGV  157 (157)
T ss_pred             ccccceEEEEEeCCCCChHHHHHHHhc-----CCceeeCCCCCeeEeEE-EEEc--CCCEEEEECcCC
Confidence            012357899999999999999999997     57789999999999875 3433  346999999997

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>cd01856 YlqF YlqF

Probab=99.95  E-value=5.6e-27  Score=200.63  Aligned_cols=166  Identities=41%  Similarity=0.666  Sum_probs=130.5

Q ss_pred             ChhHHHHHHHHhhccCEEEEEEcCCCCCCCcCHHHHHHHhCCCCEEEEEEcccCCCccchHHHHHHHHhhcCCCCcEEEe
Q psy15351          1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHESLIEEKVRKEQSHISEVIFT   80 (352)
Q Consensus         1 m~~~~~~~~~~i~~aD~vl~VvDar~p~~~~~~~l~~~l~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~v~~i   80 (352)
                      |+++++++++.+++||+|++|+|++.|....+..+.+.+ .++|.++|+||+|+.+++....|.++++..+.   .++++
T Consensus         6 ~~~~~~~~~~~i~~aD~il~v~D~~~~~~~~~~~i~~~~-~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~---~vi~i   81 (171)
T cd01856           6 MAKALRQIKEKLKLVDLVIEVRDARIPLSSRNPLLEKIL-GNKPRIIVLNKADLADPKKTKKWLKYFESKGE---KVLFV   81 (171)
T ss_pred             HHHHHHHHHHHHhhCCEEEEEeeccCccCcCChhhHhHh-cCCCEEEEEehhhcCChHHHHHHHHHHHhcCC---eEEEE
Confidence            899999999999999999999999999887776666655 57899999999999876555567777755443   48999


Q ss_pred             ecCCCCCCCHHHHHHHHHHHhhhccccccccccceeEEEeccCCCCchhHHHHHhhhhcccCCCCCCCcchhhhhccccc
Q psy15351         81 NCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTR  160 (352)
Q Consensus        81 Sa~~~~~~gi~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~nvgksslin~l~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (352)
                      ||+++  .|+++|.+.+.+.++...                           ...                         
T Consensus        82 Sa~~~--~gi~~L~~~l~~~l~~~~---------------------------~~~-------------------------  107 (171)
T cd01856          82 NAKSG--KGVKKLLKAAKKLLKDIE---------------------------KLK-------------------------  107 (171)
T ss_pred             ECCCc--ccHHHHHHHHHHHHHHHh---------------------------hhh-------------------------
Confidence            99999  999999999887654210                           000                         


Q ss_pred             cccccCcceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCCcEEEEeCCCCC
Q psy15351        161 YHRTEVYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGIS  232 (352)
Q Consensus       161 ~~~~~~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~  232 (352)
                      .....+..++++++|.||||||||+|+|.+     .....+++.||+|+..+. +...  ..+.++||||+.
T Consensus       108 ~~~~~~~~~~~~~~G~~~vGKstlin~l~~-----~~~~~~~~~~~~T~~~~~-~~~~--~~~~~iDtpG~~  171 (171)
T cd01856         108 AKGLLPRGIRAMVVGIPNVGKSTLINRLRG-----KKVAKVGNKPGVTKGIQW-IKIS--PGIYLLDTPGIL  171 (171)
T ss_pred             hcccCCCCeEEEEECCCCCCHHHHHHHHhC-----CCceeecCCCCEEeeeEE-EEec--CCEEEEECCCCC
Confidence            000123457899999999999999999997     455688999999999764 4332  468999999984

Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=99.94  E-value=8.3e-26  Score=187.26  Aligned_cols=137  Identities=33%  Similarity=0.506  Sum_probs=115.8

Q ss_pred             HHHHHHHhhccCEEEEEEcCCCCCCCcCHHHHHHHh-C--CCCEEEEEEcccCCCccchHHHHHHHHhhcCCCCcEEEee
Q psy15351          5 LKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQ-N--IRPMVLVLNKRDLINSKHESLIEEKVRKEQSHISEVIFTN   81 (352)
Q Consensus         5 ~~~~~~~i~~aD~vl~VvDar~p~~~~~~~l~~~l~-~--~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~v~~iS   81 (352)
                      |++++++++++|++++|+|+++|....+..+.+++. .  ++|+++|+||+|+++++....|.+++++.+..   ++++|
T Consensus         2 ~~~~~~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~~~~k~~iivlNK~DL~~~~~~~~~~~~~~~~~~~---ii~iS   78 (141)
T cd01857           2 WRQLWRVVERSDIVVQIVDARNPLLFRPPDLERYVKEVDPRKKNILLLNKADLLTEEQRKAWAEYFKKEGIV---VVFFS   78 (141)
T ss_pred             HHHHHHHHhhCCEEEEEEEccCCcccCCHHHHHHHHhccCCCcEEEEEechhcCCHHHHHHHHHHHHhcCCe---EEEEE
Confidence            689999999999999999999999888888888775 3  79999999999998877677888888776654   89999


Q ss_pred             cCCCCCCCHHHHHHHHHHHhhhccccccccccceeEEEeccCCCCchhHHHHHhhhhcccCCCCCCCcchhhhhcccccc
Q psy15351         82 CRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRY  161 (352)
Q Consensus        82 a~~~~~~gi~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~nvgksslin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (352)
                      |.++  .+                                                                        
T Consensus        79 a~~~--~~------------------------------------------------------------------------   84 (141)
T cd01857          79 ALKE--NA------------------------------------------------------------------------   84 (141)
T ss_pred             ecCC--Cc------------------------------------------------------------------------
Confidence            9876  21                                                                        


Q ss_pred             ccccCcceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCCcEEEEeCCCCCCC
Q psy15351        162 HRTEVYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLP  234 (352)
Q Consensus       162 ~~~~~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~~~  234 (352)
                              +++++|.|||||||++|+|.+     .+...++..||+|++.+ .+.+.  ..++++||||+..|
T Consensus        85 --------~~~~~G~~~vGKstlin~l~~-----~~~~~~~~~~~~~~~~~-~~~~~--~~~~i~DtpG~~~p  141 (141)
T cd01857          85 --------TIGLVGYPNVGKSSLINALVG-----KKKVSVSATPGKTKHFQ-TIFLT--PTITLCDCPGLVFP  141 (141)
T ss_pred             --------EEEEECCCCCCHHHHHHHHhC-----CCceeeCCCCCcccceE-EEEeC--CCEEEEECCCcCCC
Confidence                    488999999999999999997     45568999999999875 44443  36899999999875

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>cd04178 Nucleostemin_like Nucleostemin-like

Probab=99.94  E-value=7.1e-26  Score=193.19  Aligned_cols=162  Identities=30%  Similarity=0.460  Sum_probs=113.0

Q ss_pred             CEEEEEEcCCCCCCCcCHHHHHH--Hh-CCCCEEEEEEcccCCCccchHHHHHHHHhhcCCCCcEEEeecCCCCCCCHHH
Q psy15351         16 DIVIEVHDSRMPFTGRNHLLQQS--VQ-NIRPMVLVLNKRDLINSKHESLIEEKVRKEQSHISEVIFTNCRNPNCKGVQK   92 (352)
Q Consensus        16 D~vl~VvDar~p~~~~~~~l~~~--l~-~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~v~~iSa~~~~~~gi~~   92 (352)
                      |+|++|+|+|.|+++.++++.++  ++ .++|+++|+||+||++++....|.+++++....   +.+.|+...   +...
T Consensus         1 DvVl~VvDar~p~~~~~~~i~~~~~l~~~~kp~IlVlNK~DL~~~~~l~~~~~~~~~~~~~---~~~~~~~~~---~~~~   74 (172)
T cd04178           1 DVILEVLDARDPLGCRCPQVEEAVLQAGGNKKLVLVLNKIDLVPKENVEKWLKYLRREFPT---VAFKASTQS---QKKN   74 (172)
T ss_pred             CEEEEEEECCCCCCCCCHHHHHHHHhccCCCCEEEEEehhhcCCHHHHHHHHHHHHhhCCE---EEEEecccc---cccc
Confidence            89999999999999999999888  43 578999999999999988888999999765432   445555432   1111


Q ss_pred             HHHH-------HHHHhhhccccccccccceeEEEeccCCCCchhHHHHHhhhhcccCCCCCCCcchhhhhcccccccccc
Q psy15351         93 ILPT-------LQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTE  165 (352)
Q Consensus        93 L~~~-------i~~~~~~~~~~~~~~~~~~~~~~~g~~nvgksslin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (352)
                      +...       ...++.                  .....|...+++.++....+                      ...
T Consensus        75 ~~~~~~~~~~~~~~l~~------------------~~~~~~~~~l~~~~~~~~~~----------------------~~~  114 (172)
T cd04178          75 LGQKSVKVEAASADLLR------------------SSVCFGADCLLKLLKNYSRN----------------------KDI  114 (172)
T ss_pred             hhhcccccchhhhhhhh------------------hccccCHHHHHHHHHHHhhc----------------------ccc
Confidence            1110       001110                  11123444454444321110                      012


Q ss_pred             CcceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCCcEEEEeCCCC
Q psy15351        166 VYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGI  231 (352)
Q Consensus       166 ~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi  231 (352)
                      ...++++++|.||||||||||+|.+     ...+.+++.||+|++.+. +..  +.+++++||||+
T Consensus       115 ~~~~~~~~vG~pnvGKSslin~l~~-----~~~~~~~~~pg~T~~~~~-~~~--~~~~~l~DtPGi  172 (172)
T cd04178         115 KTSITVGVVGFPNVGKSSLINSLKR-----SRACNVGATPGVTKSMQE-VHL--DKKVKLLDSPGI  172 (172)
T ss_pred             ccCcEEEEEcCCCCCHHHHHHHHhC-----cccceecCCCCeEcceEE-EEe--CCCEEEEECcCC
Confidence            3468999999999999999999997     577899999999999764 333  346999999997

Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the

>cd01849 YlqF_related_GTPase YlqF-related GTPases

Probab=99.93  E-value=3.9e-25  Score=186.19  Aligned_cols=153  Identities=31%  Similarity=0.408  Sum_probs=115.9

Q ss_pred             CEEEEEEcCCCCCCCcCHHHH-HHHh-CCCCEEEEEEcccCCCccchHHHHHHHHhhcCCCCcEEEeecCCCCCCCHHHH
Q psy15351         16 DIVIEVHDSRMPFTGRNHLLQ-QSVQ-NIRPMVLVLNKRDLINSKHESLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKI   93 (352)
Q Consensus        16 D~vl~VvDar~p~~~~~~~l~-~~l~-~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~v~~iSa~~~~~~gi~~L   93 (352)
                      |++|+|+|+++|.++.+..+. ..+. .++|+++|+||+|+++++....|..++++...  ..++++||+++  .|+++|
T Consensus         1 Dvvl~VvD~~~p~~~~~~~i~~~~~~~~~~p~IiVlNK~Dl~~~~~~~~~~~~~~~~~~--~~ii~vSa~~~--~gi~~L   76 (155)
T cd01849           1 DVILEVLDARDPLGTRSPDIERVLIKEKGKKLILVLNKADLVPKEVLRKWLAYLRHSYP--TIPFKISATNG--QGIEKK   76 (155)
T ss_pred             CEEEEEEeccCCccccCHHHHHHHHhcCCCCEEEEEechhcCCHHHHHHHHHHHHhhCC--ceEEEEeccCC--cChhhH
Confidence            899999999999988888776 4444 67999999999999887666778766654432  25899999999  999999


Q ss_pred             HHHHHHHhhhccccccccccceeEEEeccCCCCchhHHHHHhhhhcccCCCCCCCcchhhhhccccccccccCcceEEEE
Q psy15351         94 LPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMV  173 (352)
Q Consensus        94 ~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~nvgksslin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i  173 (352)
                      ++.+.+...+..                          +....                         ........++++
T Consensus        77 ~~~i~~~~~~~~--------------------------~~~~~-------------------------~~~~~~~~~~~~  105 (155)
T cd01849          77 ESAFTKQTNSNL--------------------------KSYAK-------------------------DGKLKKSITVGV  105 (155)
T ss_pred             HHHHHHHhHHHH--------------------------HHHHh-------------------------ccccccCcEEEE
Confidence            988865432110                          00000                         000134688999


Q ss_pred             eCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCCcEEEEeCCCC
Q psy15351        174 VGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGI  231 (352)
Q Consensus       174 ~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi  231 (352)
                      +|.|||||||++|+|.+     .....+++.||+|++.+. ...  +..++++||||+
T Consensus       106 ~G~~~~GKstlin~l~~-----~~~~~~~~~~~~t~~~~~-~~~--~~~~~liDtPG~  155 (155)
T cd01849         106 IGYPNVGKSSVINALLN-----KLKLKVGNVPGTTTSQQE-VKL--DNKIKLLDTPGI  155 (155)
T ss_pred             EccCCCCHHHHHHHHHc-----cccccccCCCCcccceEE-EEe--cCCEEEEECCCC
Confidence            99999999999999997     455678999999999864 333  346999999997

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.

>cd01859 MJ1464 MJ1464

Probab=99.93  E-value=2.1e-24  Score=181.85  Aligned_cols=153  Identities=33%  Similarity=0.468  Sum_probs=118.2

Q ss_pred             HHHHHHHhhc-cCEEEEEEcCCCCCCCcCHHHHHHHh-CCCCEEEEEEcccCCCccchHHHHHHHHhhcCCCCcEEEeec
Q psy15351          5 LKDIEKHLKN-VDIVIEVHDSRMPFTGRNHLLQQSVQ-NIRPMVLVLNKRDLINSKHESLIEEKVRKEQSHISEVIFTNC   82 (352)
Q Consensus         5 ~~~~~~~i~~-aD~vl~VvDar~p~~~~~~~l~~~l~-~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~v~~iSa   82 (352)
                      |+++.+.+.+ +|++|+|+|+++|....+..+..++. .++|+++|+||+|+.+.+....|..+....+.   +++++||
T Consensus         2 ~~~~~~~i~~~aD~vl~V~D~~~~~~~~~~~l~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~---~~~~iSa   78 (156)
T cd01859           2 WKRLVRRIIKESDVVLEVLDARDPELTRSRKLERYVLELGKKLLIVLNKADLVPKEVLEKWKSIKESEGI---PVVYVSA   78 (156)
T ss_pred             HHHHHHHHHhhCCEEEEEeeCCCCcccCCHHHHHHHHhCCCcEEEEEEhHHhCCHHHHHHHHHHHHhCCC---cEEEEEc
Confidence            6777766655 99999999999988777777766654 57999999999999865444445433333333   4899999


Q ss_pred             CCCCCCCHHHHHHHHHHHhhhccccccccccceeEEEeccCCCCchhHHHHHhhhhcccCCCCCCCcchhhhhccccccc
Q psy15351         83 RNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYH  162 (352)
Q Consensus        83 ~~~~~~gi~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~nvgksslin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (352)
                      +++  .|+++|++.+.+.++..                                                          
T Consensus        79 ~~~--~gi~~L~~~l~~~~~~~----------------------------------------------------------   98 (156)
T cd01859          79 KER--LGTKILRRTIKELAKID----------------------------------------------------------   98 (156)
T ss_pred             ccc--ccHHHHHHHHHHHHhhc----------------------------------------------------------
Confidence            999  99999999988766521                                                          


Q ss_pred             cccCcceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCCcEEEEeCCCC
Q psy15351        163 RTEVYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGI  231 (352)
Q Consensus       163 ~~~~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi  231 (352)
                         ....+++++|.|||||||++|+|.+     .....+++.+|+|++.+ .+..  +..+.++||||+
T Consensus        99 ---~~~~~~~~ig~~~~Gkssl~~~l~~-----~~~~~~~~~~~~t~~~~-~~~~--~~~~~~~DtpGi  156 (156)
T cd01859          99 ---GKEGKVGVVGYPNVGKSSIINALKG-----RHSASTSPSPGYTKGEQ-LVKI--TSKIYLLDTPGV  156 (156)
T ss_pred             ---CCCcEEEEECCCCCCHHHHHHHHhC-----CCccccCCCCCeeeeeE-EEEc--CCCEEEEECcCC
Confidence               1346789999999999999999996     45677899999998764 3332  336999999996

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.

>cd01855 YqeH YqeH

Probab=99.93  E-value=1.7e-24  Score=188.38  Aligned_cols=156  Identities=24%  Similarity=0.275  Sum_probs=113.6

Q ss_pred             HHHHHHhhccCEEEEEEcCCCCCCCcCHHHHHHHhCCCCEEEEEEcccCCCccch----HHHHHHH--HhhcCCCCcEEE
Q psy15351          6 KDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE----SLIEEKV--RKEQSHISEVIF   79 (352)
Q Consensus         6 ~~~~~~i~~aD~vl~VvDar~p~~~~~~~l~~~l~~~k~~ilVlNK~Dl~~~~~~----~~~~~~~--~~~~~~~~~v~~   79 (352)
                      ..+...++++|+|++|+|++++.......+.... .++|+++|+||+|+.+++..    ..|.+.+  +..+....++++
T Consensus        26 ~~l~~~~~~ad~il~VvD~~~~~~~~~~~l~~~~-~~~~~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  104 (190)
T cd01855          26 NLLSSISPKKALVVHVVDIFDFPGSLIPRLRLFG-GNNPVILVGNKIDLLPKDKNLVRIKNWLRAKAAAGLGLKPKDVIL  104 (190)
T ss_pred             HHHHhcccCCcEEEEEEECccCCCccchhHHHhc-CCCcEEEEEEchhcCCCCCCHHHHHHHHHHHHHhhcCCCcccEEE
Confidence            3455678999999999999988766666663322 57899999999999865432    2233111  222332235899


Q ss_pred             eecCCCCCCCHHHHHHHHHHHhhhccccccccccceeEEEeccCCCCchhHHHHHhhhhcccCCCCCCCcchhhhhcccc
Q psy15351         80 TNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMT  159 (352)
Q Consensus        80 iSa~~~~~~gi~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~nvgksslin~l~~~~~~~~~~~~~~~~~~~~~~~~~  159 (352)
                      +||+++  +|+++|++.|.+.++                                                         
T Consensus       105 vSA~~~--~gi~eL~~~l~~~l~---------------------------------------------------------  125 (190)
T cd01855         105 ISAKKG--WGVEELINAIKKLAK---------------------------------------------------------  125 (190)
T ss_pred             EECCCC--CCHHHHHHHHHHHhh---------------------------------------------------------
Confidence            999999  999999998876543                                                         


Q ss_pred             ccccccCcceEEEEeCCCCCChHHHHHHHhCCCCCCC---CceecCCCCCceeEeeeeEEecCCCcEEEEeCCCC
Q psy15351        160 RYHRTEVYNTTVMVVGVPNVGKSSIINALRSSHMKKG---KAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGI  231 (352)
Q Consensus       160 ~~~~~~~~~~~v~i~G~pnvGKStliN~l~~~~~~~~---~~~~~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi  231 (352)
                             ...+++++|.||||||||||+|.+......   ..+.++..||||++.+. +.+..  .++++||||+
T Consensus       126 -------~~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~-~~~~~--~~~~~DtPG~  190 (190)
T cd01855         126 -------KGGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIK-IPLGN--GKKLYDTPGI  190 (190)
T ss_pred             -------cCCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEE-EecCC--CCEEEeCcCC
Confidence                   124689999999999999999997432221   34678999999999864 44332  5899999997

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>PRK12289 GTPase RsgA; Reviewed

Probab=99.91  E-value=1.8e-23  Score=196.78  Aligned_cols=181  Identities=25%  Similarity=0.362  Sum_probs=130.9

Q ss_pred             HHhhccCEEEEEEcCCCCCCCcCHHHHHHHh----CCCCEEEEEEcccCCCccchHHHHHHHHhhcCCCCcEEEeecCCC
Q psy15351         10 KHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQ----NIRPMVLVLNKRDLINSKHESLIEEKVRKEQSHISEVIFTNCRNP   85 (352)
Q Consensus        10 ~~i~~aD~vl~VvDar~p~~~~~~~l~~~l~----~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~v~~iSa~~~   85 (352)
                      ..++++|+|++|+|+.+|... ...+.+++.    .+.|.++|+||+||++++....|.+.|...++.   ++++||.++
T Consensus        85 ~~~aNvD~vLlV~d~~~p~~~-~~~LdR~L~~a~~~~ip~ILVlNK~DLv~~~~~~~~~~~~~~~g~~---v~~iSA~tg  160 (352)
T PRK12289         85 PPVANADQILLVFALAEPPLD-PWQLSRFLVKAESTGLEIVLCLNKADLVSPTEQQQWQDRLQQWGYQ---PLFISVETG  160 (352)
T ss_pred             hhhhcCCEEEEEEECCCCCCC-HHHHHHHHHHHHHCCCCEEEEEEchhcCChHHHHHHHHHHHhcCCe---EEEEEcCCC
Confidence            358999999999999876422 223444443    578999999999999776667888888777775   999999999


Q ss_pred             CCCCHHHHHHHHHHHhhhccccccccccceeEEEeccCCCCchhHHHHHhhhhcccCCCCCCCcchhhhhcccccccccc
Q psy15351         86 NCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTE  165 (352)
Q Consensus        86 ~~~gi~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~nvgksslin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (352)
                        .|+++|++.+..                                                                  
T Consensus       161 --~GI~eL~~~L~~------------------------------------------------------------------  172 (352)
T PRK12289        161 --IGLEALLEQLRN------------------------------------------------------------------  172 (352)
T ss_pred             --CCHHHHhhhhcc------------------------------------------------------------------
Confidence              999988766520                                                                  


Q ss_pred             CcceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCC-------ceeEeeeeEEecCCCcEEEEeCCCCCCCCCCC
Q psy15351        166 VYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAG-------VTRSVMSQVKISEKPLIYILDTPGISLPRIDN  238 (352)
Q Consensus       166 ~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg-------~T~~~~~~~~~~~~~~~~l~DtPGi~~~~~~~  238 (352)
                         ..++|+|.||||||||||+|.+     .....++..+|       ||++.+ .+.+..  ..+|+|||||..+....
T Consensus       173 ---ki~v~iG~SgVGKSSLIN~L~~-----~~~~~t~~vs~~~~rGrHTT~~~~-l~~l~~--g~~liDTPG~~~~~l~~  241 (352)
T PRK12289        173 ---KITVVAGPSGVGKSSLINRLIP-----DVELRVGKVSGKLGRGRHTTRHVE-LFELPN--GGLLADTPGFNQPDLDC  241 (352)
T ss_pred             ---ceEEEEeCCCCCHHHHHHHHcC-----ccccccccccCCCCCCCCcCceeE-EEECCC--CcEEEeCCCcccccccc
Confidence               1378999999999999999997     56677888888       888874 454433  25899999999886521


Q ss_pred             HHHHHHHHHHhhhhhhccchhhhhHhHHhhhc--CCCCCcccccccCCCCCccHH
Q psy15351        239 LECGMRLAACATLQDHLVGEINIADYILFYLN--RTGNYRYVDFFNLDEPSDDIV  291 (352)
Q Consensus       239 ~~~~~~l~~~~~i~~~~~~~~~~~~~il~~~~--~~~~~~~~~~~~l~~~~~~~~  291 (352)
                      ....                  +..++..+-.  ....|.|.+|.+..+|.+.+.
T Consensus       242 ~~~~------------------l~~~F~e~~~~~~~~~CrF~dC~H~~EPgCaV~  278 (352)
T PRK12289        242 SPRE------------------LAHYFPEARQRLAQGNCQFNDCLHRDEPNCAVR  278 (352)
T ss_pred             CHHH------------------HHhhHHHHHHhHhhCceEccCCccCCCCChhhh
Confidence            1111                  1222111111  124578899999999987654

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=99.91  E-value=2.4e-23  Score=187.80  Aligned_cols=184  Identities=24%  Similarity=0.315  Sum_probs=129.6

Q ss_pred             HHhhccCEEEEEEcCCCCCCCcCHHHHHHHh----CCCCEEEEEEcccCCCccch-HHHHHHHHhhcCCCCcEEEeecCC
Q psy15351         10 KHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQ----NIRPMVLVLNKRDLINSKHE-SLIEEKVRKEQSHISEVIFTNCRN   84 (352)
Q Consensus        10 ~~i~~aD~vl~VvDar~p~~~~~~~l~~~l~----~~k~~ilVlNK~Dl~~~~~~-~~~~~~~~~~~~~~~~v~~iSa~~   84 (352)
                      ..++++|.+++|.|+++|..+.+. +.+++.    .+.|.++|+||+||.+.... .+|.+.+.+.++.   ++.+||++
T Consensus        32 ~~~~n~D~viiV~d~~~p~~s~~~-l~r~l~~~~~~~i~~vIV~NK~DL~~~~~~~~~~~~~~~~~g~~---v~~~SAkt  107 (245)
T TIGR00157        32 PIVANIDQIVIVSSAVLPELSLNQ-LDRFLVVAEAQNIEPIIVLNKIDLLDDEDMEKEQLDIYRNIGYQ---VLMTSSKN  107 (245)
T ss_pred             cccccCCEEEEEEECCCCCCCHHH-HHHHHHHHHHCCCCEEEEEECcccCCCHHHHHHHHHHHHHCCCe---EEEEecCC
Confidence            367899999999999988755432 344432    57899999999999865443 3677777766665   99999999


Q ss_pred             CCCCCHHHHHHHHHHHhhhccccccccccceeEEEeccCCCCchhHHHHHhhhhcccCCCCCCCcchhhhhccccccccc
Q psy15351         85 PNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRT  164 (352)
Q Consensus        85 ~~~~gi~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~nvgksslin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (352)
                      +  .|+++|++.+.                                                                  
T Consensus       108 g--~gi~eLf~~l~------------------------------------------------------------------  119 (245)
T TIGR00157       108 Q--DGLKELIEALQ------------------------------------------------------------------  119 (245)
T ss_pred             c--hhHHHHHhhhc------------------------------------------------------------------
Confidence            9  99999876542                                                                  


Q ss_pred             cCcceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCC-------CCceeEeeeeEEecCCCcEEEEeCCCCCCCCCC
Q psy15351        165 EVYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPK-------AGVTRSVMSQVKISEKPLIYILDTPGISLPRID  237 (352)
Q Consensus       165 ~~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~-------pg~T~~~~~~~~~~~~~~~~l~DtPGi~~~~~~  237 (352)
                         ...++++|.||||||||||+|.+.     ....++..       .+||++.+ .+...   ..+++||||+....+.
T Consensus       120 ---~~~~~~~G~sgvGKStLiN~L~~~-----~~~~t~~i~~~~~~G~hTT~~~~-l~~l~---~~~liDtPG~~~~~l~  187 (245)
T TIGR00157       120 ---NRISVFAGQSGVGKSSLINALDPS-----VKQQVNDISSKLGLGKHTTTHVE-LFHFH---GGLIADTPGFNEFGLW  187 (245)
T ss_pred             ---CCEEEEECCCCCCHHHHHHHHhhh-----hhccccceeccCCCCCCcCCceE-EEEcC---CcEEEeCCCccccCCC
Confidence               124789999999999999999973     33333333       34888875 44442   3589999999998765


Q ss_pred             CHHHHHHHHHHhhhhhhccchhhhhHhHHhhhcCCCCCcccccccCCCCCccHHHHH
Q psy15351        238 NLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLL  294 (352)
Q Consensus       238 ~~~~~~~l~~~~~i~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~l~~~~~~~~~~l  294 (352)
                      +.+..                 .+..++..+-.....|.|.+|.++.+|.+.+.+-+
T Consensus       188 ~~~~~-----------------~~~~~f~e~~~~~~~C~f~~C~H~~ep~C~v~~a~  227 (245)
T TIGR00157       188 HLEPE-----------------QLTQGFVEFRDYLGECKFRDCLHQSEPGCAVRQAV  227 (245)
T ss_pred             CCCHH-----------------HHHHhCHHHHHHhCCCCCCCCccCCCCCChHHHHH
Confidence            43311                 11222222222234588899999999999776544

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>PRK13796 GTPase YqeH; Provisional

Probab=99.90  E-value=1.2e-22  Score=193.37  Aligned_cols=159  Identities=22%  Similarity=0.298  Sum_probs=120.2

Q ss_pred             HHHHHHHhhccC-EEEEEEcCCCCCCCcCHHHHHHHhCCCCEEEEEEcccCCCccc----hHHHHHHHH-hhcCCCCcEE
Q psy15351          5 LKDIEKHLKNVD-IVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKH----ESLIEEKVR-KEQSHISEVI   78 (352)
Q Consensus         5 ~~~~~~~i~~aD-~vl~VvDar~p~~~~~~~l~~~l~~~k~~ilVlNK~Dl~~~~~----~~~~~~~~~-~~~~~~~~v~   78 (352)
                      ++++.+.+..+| +|++|+|+.+...+..+.+.++. .++|+++|+||+||.+++.    ...|.+.+. +.++.+.+++
T Consensus        59 ~~~~l~~i~~~~~lIv~VVD~~D~~~s~~~~L~~~~-~~kpviLViNK~DLl~~~~~~~~i~~~l~~~~k~~g~~~~~v~  137 (365)
T PRK13796         59 FLKLLNGIGDSDALVVNVVDIFDFNGSWIPGLHRFV-GNNPVLLVGNKADLLPKSVKKNKVKNWLRQEAKELGLRPVDVV  137 (365)
T ss_pred             HHHHHHhhcccCcEEEEEEECccCCCchhHHHHHHh-CCCCEEEEEEchhhCCCccCHHHHHHHHHHHHHhcCCCcCcEE
Confidence            455667777777 99999999998888888887776 5889999999999987532    345655443 3355334689


Q ss_pred             EeecCCCCCCCHHHHHHHHHHHhhhccccccccccceeEEEeccCCCCchhHHHHHhhhhcccCCCCCCCcchhhhhccc
Q psy15351         79 FTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNM  158 (352)
Q Consensus        79 ~iSa~~~~~~gi~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~nvgksslin~l~~~~~~~~~~~~~~~~~~~~~~~~  158 (352)
                      .+||+++  .|+++|++.+.+..+                                                        
T Consensus       138 ~vSAk~g--~gI~eL~~~I~~~~~--------------------------------------------------------  159 (365)
T PRK13796        138 LISAQKG--HGIDELLEAIEKYRE--------------------------------------------------------  159 (365)
T ss_pred             EEECCCC--CCHHHHHHHHHHhcC--------------------------------------------------------
Confidence            9999999  999999888754311                                                        


Q ss_pred             cccccccCcceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCCcEEEEeCCCCCCC
Q psy15351        159 TRYHRTEVYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLP  234 (352)
Q Consensus       159 ~~~~~~~~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~~~  234 (352)
                               ..+++++|.||||||||||+|.+..........+|..||||++.+. +.+..  ...++||||+...
T Consensus       160 ---------~~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~-~~l~~--~~~l~DTPGi~~~  223 (365)
T PRK13796        160 ---------GRDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIE-IPLDD--GSFLYDTPGIIHR  223 (365)
T ss_pred             ---------CCeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEE-EEcCC--CcEEEECCCcccc
Confidence                     1358999999999999999998643222345678999999999763 44433  4689999999854

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.90  E-value=1.3e-22  Score=198.38  Aligned_cols=166  Identities=23%  Similarity=0.273  Sum_probs=127.4

Q ss_pred             HHHHHHHHhhccCEEEEEEcCCCCCCCcCHHHHHHHh-CCCCEEEEEEcccCCCccchHHHHHHHHhhcCCCCcEEEeec
Q psy15351          4 GLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQ-NIRPMVLVLNKRDLINSKHESLIEEKVRKEQSHISEVIFTNC   82 (352)
Q Consensus         4 ~~~~~~~~i~~aD~vl~VvDar~p~~~~~~~l~~~l~-~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~v~~iSa   82 (352)
                      ..+++..+++.+|++++|+|++.+....+..+.++++ .++|+++|+||+|+.+.+..  ..+ +.+.+..  +++.+||
T Consensus        68 ~~~~~~~~~~~ad~vl~vvD~~~~~~~~d~~i~~~l~~~~~piilVvNK~D~~~~~~~--~~~-~~~lg~~--~~~~vSa  142 (429)
T TIGR03594        68 IREQAEIAIEEADVILFVVDGREGLTPEDEEIAKWLRKSGKPVILVANKIDGKKEDAV--AAE-FYSLGFG--EPIPISA  142 (429)
T ss_pred             HHHHHHHHHhhCCEEEEEEeCCCCCCHHHHHHHHHHHHhCCCEEEEEECccCCccccc--HHH-HHhcCCC--CeEEEeC
Confidence            4466778899999999999999988877777878776 68999999999999865431  222 2344543  6999999


Q ss_pred             CCCCCCCHHHHHHHHHHHhhhccccccccccceeEEEeccCCCCchhHHHHHhhhhcccCCCCCCCcchhhhhccccccc
Q psy15351         83 RNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYH  162 (352)
Q Consensus        83 ~~~~~~gi~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~nvgksslin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (352)
                      .++  .|+.++++++.+.++....                                                      ..
T Consensus       143 ~~g--~gv~~ll~~i~~~l~~~~~------------------------------------------------------~~  166 (429)
T TIGR03594       143 EHG--RGIGDLLDAILELLPEEEE------------------------------------------------------EE  166 (429)
T ss_pred             CcC--CChHHHHHHHHHhcCcccc------------------------------------------------------cc
Confidence            999  9999999998776643210                                                      00


Q ss_pred             cccCcceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCCcEEEEeCCCCCCCC
Q psy15351        163 RTEVYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPR  235 (352)
Q Consensus       163 ~~~~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~~~~  235 (352)
                      ......++|+++|.||||||||+|+|++     .....+++.||||++.........+..+.++||||+....
T Consensus       167 ~~~~~~~~v~ivG~~~~GKSsLin~l~~-----~~~~~~~~~~gtt~~~~~~~~~~~~~~~~liDT~G~~~~~  234 (429)
T TIGR03594       167 EEEDGPIKIAIIGRPNVGKSTLVNALLG-----EERVIVSDIAGTTRDSIDIPFERNGKKYLLIDTAGIRRKG  234 (429)
T ss_pred             cccCCceEEEEECCCCCCHHHHHHHHHC-----CCeeecCCCCCceECcEeEEEEECCcEEEEEECCCccccc
Confidence            0112458999999999999999999997     4556788999999987654444455679999999998653

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH

Probab=99.89  E-value=5.6e-22  Score=188.52  Aligned_cols=155  Identities=23%  Similarity=0.284  Sum_probs=118.2

Q ss_pred             HHHhhccCEEEEEEcCCCCCCCcCHHHHHHHhCCCCEEEEEEcccCCCccc----hHHHHH-HHHhhcCCCCcEEEeecC
Q psy15351          9 EKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKH----ESLIEE-KVRKEQSHISEVIFTNCR   83 (352)
Q Consensus         9 ~~~i~~aD~vl~VvDar~p~~~~~~~l~~~l~~~k~~ilVlNK~Dl~~~~~----~~~~~~-~~~~~~~~~~~v~~iSa~   83 (352)
                      ......+|+|++|+|+.++..+..+++.+++ .++|+++|+||+||+++..    ..+|.+ ++++.+....+++.+||+
T Consensus        58 ~~~~~~~~~Il~VvD~~d~~~s~~~~l~~~~-~~~piilV~NK~DLl~k~~~~~~~~~~l~~~~k~~g~~~~~i~~vSAk  136 (360)
T TIGR03597        58 NSLGDSNALIVYVVDIFDFEGSLIPELKRFV-GGNPVLLVGNKIDLLPKSVNLSKIKEWMKKRAKELGLKPVDIILVSAK  136 (360)
T ss_pred             hhcccCCcEEEEEEECcCCCCCccHHHHHHh-CCCCEEEEEEchhhCCCCCCHHHHHHHHHHHHHHcCCCcCcEEEecCC
Confidence            3445788999999999998888888888877 5789999999999987542    344543 344445433358999999


Q ss_pred             CCCCCCHHHHHHHHHHHhhhccccccccccceeEEEeccCCCCchhHHHHHhhhhcccCCCCCCCcchhhhhcccccccc
Q psy15351         84 NPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHR  163 (352)
Q Consensus        84 ~~~~~gi~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~nvgksslin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (352)
                      ++  .|+++|++.+.+..                                                              
T Consensus       137 ~g--~gv~eL~~~l~~~~--------------------------------------------------------------  152 (360)
T TIGR03597       137 KG--NGIDELLDKIKKAR--------------------------------------------------------------  152 (360)
T ss_pred             CC--CCHHHHHHHHHHHh--------------------------------------------------------------
Confidence            99  99999998875421                                                              


Q ss_pred             ccCcceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCCcEEEEeCCCCCCC
Q psy15351        164 TEVYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLP  234 (352)
Q Consensus       164 ~~~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~~~  234 (352)
                         .+.+++++|.||||||||||+|.+........+.++..||||++.+. +..  +..+.++||||+...
T Consensus       153 ---~~~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~-~~~--~~~~~l~DtPG~~~~  217 (360)
T TIGR03597       153 ---NKKDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIE-IPL--DDGHSLYDTPGIINS  217 (360)
T ss_pred             ---CCCeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEE-EEe--CCCCEEEECCCCCCh
Confidence               02469999999999999999999743222345789999999999763 333  235789999999875

This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.

>PRK12288 GTPase RsgA; Reviewed

Probab=99.89  E-value=1.1e-21  Score=184.56  Aligned_cols=182  Identities=20%  Similarity=0.247  Sum_probs=127.0

Q ss_pred             HhhccCEEEEEEcCCCCCCCcCHHHHHHHh----CCCCEEEEEEcccCCCccc---hHHHHHHHHhhcCCCCcEEEeecC
Q psy15351         11 HLKNVDIVIEVHDSRMPFTGRNHLLQQSVQ----NIRPMVLVLNKRDLINSKH---ESLIEEKVRKEQSHISEVIFTNCR   83 (352)
Q Consensus        11 ~i~~aD~vl~VvDar~p~~~~~~~l~~~l~----~~k~~ilVlNK~Dl~~~~~---~~~~~~~~~~~~~~~~~v~~iSa~   83 (352)
                      .++++|.++.|.+...++ +. ..+.+|+.    .+.|.++|+||+||++...   ..+|.+.+.+.++.   ++.+||+
T Consensus       117 iaANvD~vlIV~s~~p~~-s~-~~Ldr~L~~a~~~~i~~VIVlNK~DL~~~~~~~~~~~~~~~y~~~g~~---v~~vSA~  191 (347)
T PRK12288        117 IAANIDQIVIVSAVLPEL-SL-NIIDRYLVACETLGIEPLIVLNKIDLLDDEGRAFVNEQLDIYRNIGYR---VLMVSSH  191 (347)
T ss_pred             EEEEccEEEEEEeCCCCC-CH-HHHHHHHHHHHhcCCCEEEEEECccCCCcHHHHHHHHHHHHHHhCCCe---EEEEeCC
Confidence            578999999888865332 22 23344432    5789999999999987542   45666777666765   9999999


Q ss_pred             CCCCCCHHHHHHHHHHHhhhccccccccccceeEEEeccCCCCchhHHHHHhhhhcccCCCCCCCcchhhhhcccccccc
Q psy15351         84 NPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHR  163 (352)
Q Consensus        84 ~~~~~gi~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~nvgksslin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (352)
                      ++  .|+++|++.+..                                                                
T Consensus       192 tg--~GideL~~~L~~----------------------------------------------------------------  205 (347)
T PRK12288        192 TG--EGLEELEAALTG----------------------------------------------------------------  205 (347)
T ss_pred             CC--cCHHHHHHHHhh----------------------------------------------------------------
Confidence            99  999998877631                                                                


Q ss_pred             ccCcceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCC-------ceeEeeeeEEecCCCcEEEEeCCCCCCCCC
Q psy15351        164 TEVYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAG-------VTRSVMSQVKISEKPLIYILDTPGISLPRI  236 (352)
Q Consensus       164 ~~~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg-------~T~~~~~~~~~~~~~~~~l~DtPGi~~~~~  236 (352)
                           ..++++|.||||||||||+|.+     .....++..++       ||+..+ .+.+..  ...|+|||||....+
T Consensus       206 -----ki~~~vG~sgVGKSTLiN~Ll~-----~~~~~t~~is~~~~rGrHTT~~~~-l~~l~~--~~~liDTPGir~~~l  272 (347)
T PRK12288        206 -----RISIFVGQSGVGKSSLINALLP-----EAEILVGDVSDNSGLGQHTTTAAR-LYHFPH--GGDLIDSPGVREFGL  272 (347)
T ss_pred             -----CCEEEECCCCCCHHHHHHHhcc-----ccceeeccccCcCCCCcCceeeEE-EEEecC--CCEEEECCCCCcccC
Confidence                 1268999999999999999997     45566666665       676654 555543  357999999998876


Q ss_pred             CCHH-HHHHHHHHhhhhhhccchhhhhHhHHhhhcCCCCCcccccccCCCCCccHHHHH
Q psy15351        237 DNLE-CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLL  294 (352)
Q Consensus       237 ~~~~-~~~~l~~~~~i~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~l~~~~~~~~~~l  294 (352)
                      .+.+ +.+                  ..++..+-.....|.|.+|.+..+|.+.+.+-+
T Consensus       273 ~~~~~~~l------------------~~~F~ei~~~~~~CrF~dC~H~~EpgCaV~~Av  313 (347)
T PRK12288        273 WHLEPEQV------------------TQGFVEFRDYLGTCKFRDCKHDDDPGCALREAV  313 (347)
T ss_pred             CCCCHHHH------------------HHhhHHHHHHhcCCCCCCCccCCCCCChHHHHH
Confidence            4322 122                  222222222235588999999999999766544

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.88  E-value=1.3e-21  Score=191.45  Aligned_cols=164  Identities=24%  Similarity=0.280  Sum_probs=123.2

Q ss_pred             HHHHHHHhhccCEEEEEEcCCCCCCCcCHHHHHHHh-CCCCEEEEEEcccCCCccchHHHHHHHHhhcCCCCcEEEeecC
Q psy15351          5 LKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQ-NIRPMVLVLNKRDLINSKHESLIEEKVRKEQSHISEVIFTNCR   83 (352)
Q Consensus         5 ~~~~~~~i~~aD~vl~VvDar~p~~~~~~~l~~~l~-~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~v~~iSa~   83 (352)
                      .+++..++..+|++|+|+|++.+.+..+..+.++++ .++|+++|+||+|+.+.+  ....+++ +.+..  +++.+||+
T Consensus        71 ~~~~~~~~~~ad~il~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~D~~~~~--~~~~~~~-~lg~~--~~~~iSa~  145 (435)
T PRK00093         71 REQAELAIEEADVILFVVDGRAGLTPADEEIAKILRKSNKPVILVVNKVDGPDEE--ADAYEFY-SLGLG--EPYPISAE  145 (435)
T ss_pred             HHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCcEEEEEECccCccch--hhHHHHH-hcCCC--CCEEEEee
Confidence            345667889999999999999987777777777776 689999999999976532  2222332 34443  58899999


Q ss_pred             CCCCCCHHHHHHHHHHHhhhccccccccccceeEEEeccCCCCchhHHHHHhhhhcccCCCCCCCcchhhhhcccccccc
Q psy15351         84 NPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHR  163 (352)
Q Consensus        84 ~~~~~gi~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~nvgksslin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (352)
                      ++  .|+.++++.+.+..+...                                                       ...
T Consensus       146 ~g--~gv~~l~~~I~~~~~~~~-------------------------------------------------------~~~  168 (435)
T PRK00093        146 HG--RGIGDLLDAILEELPEEE-------------------------------------------------------EED  168 (435)
T ss_pred             CC--CCHHHHHHHHHhhCCccc-------------------------------------------------------ccc
Confidence            99  999999988865221100                                                       000


Q ss_pred             ccCcceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCCcEEEEeCCCCCCCC
Q psy15351        164 TEVYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPR  235 (352)
Q Consensus       164 ~~~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~~~~  235 (352)
                      .....++|+++|.||+|||||+|+|++     .....+++.||+|++.........+..+.++||||+....
T Consensus       169 ~~~~~~~v~ivG~~n~GKStlin~ll~-----~~~~~~~~~~gtt~~~~~~~~~~~~~~~~lvDT~G~~~~~  235 (435)
T PRK00093        169 EEDEPIKIAIIGRPNVGKSSLINALLG-----EERVIVSDIAGTTRDSIDTPFERDGQKYTLIDTAGIRRKG  235 (435)
T ss_pred             ccccceEEEEECCCCCCHHHHHHHHhC-----CCceeecCCCCceEEEEEEEEEECCeeEEEEECCCCCCCc
Confidence            012468999999999999999999997     4567889999999998754444556679999999998764

>PRK00098 GTPase RsgA; Reviewed

Probab=99.87  E-value=2.4e-21  Score=179.77  Aligned_cols=187  Identities=22%  Similarity=0.329  Sum_probs=125.5

Q ss_pred             HHHhhccCEEEEEEcCCCCCCCcCHHHHHHH---h-CCCCEEEEEEcccCCCc-cchHHHHHHHHhhcCCCCcEEEeecC
Q psy15351          9 EKHLKNVDIVIEVHDSRMPFTGRNHLLQQSV---Q-NIRPMVLVLNKRDLINS-KHESLIEEKVRKEQSHISEVIFTNCR   83 (352)
Q Consensus         9 ~~~i~~aD~vl~VvDar~p~~~~~~~l~~~l---~-~~k~~ilVlNK~Dl~~~-~~~~~~~~~~~~~~~~~~~v~~iSa~   83 (352)
                      +..++++|++++|+|+++|..... .+.+++   . .+.|.++|+||+||.+. .....|.+.+++.+.+   ++++||+
T Consensus        75 q~iaaniD~vllV~d~~~p~~~~~-~idr~L~~~~~~~ip~iIVlNK~DL~~~~~~~~~~~~~~~~~g~~---v~~vSA~  150 (298)
T PRK00098         75 KLIAANVDQAVLVFAAKEPDFSTD-LLDRFLVLAEANGIKPIIVLNKIDLLDDLEEARELLALYRAIGYD---VLELSAK  150 (298)
T ss_pred             cceeecCCEEEEEEECCCCCCCHH-HHHHHHHHHHHCCCCEEEEEEhHHcCCCHHHHHHHHHHHHHCCCe---EEEEeCC
Confidence            446799999999999987754322 233333   2 57899999999999743 3345677777666665   9999999


Q ss_pred             CCCCCCHHHHHHHHHHHhhhccccccccccceeEEEeccCCCCchhHHHHHhhhhcccCCCCCCCcchhhhhcccccccc
Q psy15351         84 NPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHR  163 (352)
Q Consensus        84 ~~~~~gi~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~nvgksslin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (352)
                      ++  .|+++|++.+.                                                                 
T Consensus       151 ~g--~gi~~L~~~l~-----------------------------------------------------------------  163 (298)
T PRK00098        151 EG--EGLDELKPLLA-----------------------------------------------------------------  163 (298)
T ss_pred             CC--ccHHHHHhhcc-----------------------------------------------------------------
Confidence            99  99998876541                                                                 


Q ss_pred             ccCcceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCC-------ceeEeeeeEEecCCCcEEEEeCCCCCCCCC
Q psy15351        164 TEVYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAG-------VTRSVMSQVKISEKPLIYILDTPGISLPRI  236 (352)
Q Consensus       164 ~~~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg-------~T~~~~~~~~~~~~~~~~l~DtPGi~~~~~  236 (352)
                          +..++++|.||||||||+|+|.+.     ....++..++       ||+..+ .+....  ..+++||||+....+
T Consensus       164 ----gk~~~~~G~sgvGKStlin~l~~~-----~~~~~g~v~~~~~~G~htT~~~~-~~~~~~--~~~~~DtpG~~~~~~  231 (298)
T PRK00098        164 ----GKVTVLAGQSGVGKSTLLNALAPD-----LELKTGEISEALGRGKHTTTHVE-LYDLPG--GGLLIDTPGFSSFGL  231 (298)
T ss_pred             ----CceEEEECCCCCCHHHHHHHHhCC-----cCCCCcceeccCCCCCcccccEE-EEEcCC--CcEEEECCCcCccCC
Confidence                135889999999999999999973     3344444443       676653 344432  369999999997654


Q ss_pred             CCHHHHHHHHHHhhhhhhccchhhhhHhHHhhhcCCCCCcccccccCCCCCccHHHHHH
Q psy15351        237 DNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLA  295 (352)
Q Consensus       237 ~~~~~~~~l~~~~~i~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~l~~~~~~~~~~l~  295 (352)
                      ...+.                 +.+..++..+-.-.+.|.|.+|.+..+|.+.+.+.++
T Consensus       232 ~~~~~-----------------~~~~~~f~~~~~~~~~c~f~~c~h~~ep~c~v~~a~~  273 (298)
T PRK00098        232 HDLEA-----------------EELEHYFPEFRPLSGDCKFRNCTHLHEPGCAVKAAVE  273 (298)
T ss_pred             CCCCH-----------------HHHHHHHHHHHHHhCCCCCCCCcCCCCCCChHHHHHH
Confidence            32211                 0111222222222345778888888899887766543

>cd01854 YjeQ_engC YjeQ/EngC

Probab=99.87  E-value=4.1e-21  Score=177.32  Aligned_cols=191  Identities=22%  Similarity=0.262  Sum_probs=126.8

Q ss_pred             HHhhccCEEEEEEcCCCCCCCcCHHHHHHHh----CCCCEEEEEEcccCCCccchHHHHHHHHhhcCCCCcEEEeecCCC
Q psy15351         10 KHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQ----NIRPMVLVLNKRDLINSKHESLIEEKVRKEQSHISEVIFTNCRNP   85 (352)
Q Consensus        10 ~~i~~aD~vl~VvDar~p~~~~~~~l~~~l~----~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~v~~iSa~~~   85 (352)
                      ..++++|++++|+|++.|..+ ...+.+++.    .++|.++|+||+||.++.....|..++.+.+.+   ++++||+++
T Consensus        74 ~i~anvD~vllV~d~~~p~~s-~~~ldr~L~~~~~~~ip~iIVlNK~DL~~~~~~~~~~~~~~~~g~~---v~~vSA~~g  149 (287)
T cd01854          74 VIAANVDQLVIVVSLNEPFFN-PRLLDRYLVAAEAAGIEPVIVLTKADLLDDEEEELELVEALALGYP---VLAVSAKTG  149 (287)
T ss_pred             eEEEeCCEEEEEEEcCCCCCC-HHHHHHHHHHHHHcCCCEEEEEEHHHCCChHHHHHHHHHHHhCCCe---EEEEECCCC
Confidence            358999999999999988722 223444432    578999999999998764444555655555655   999999999


Q ss_pred             CCCCHHHHHHHHHHHhhhccccccccccceeEEEeccCCCCchhHHHHHhhhhcccCCCCCCCcchhhhhcccccccccc
Q psy15351         86 NCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTE  165 (352)
Q Consensus        86 ~~~gi~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~nvgksslin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (352)
                        .|+++|...+.                                                                   
T Consensus       150 --~gi~~L~~~L~-------------------------------------------------------------------  160 (287)
T cd01854         150 --EGLDELREYLK-------------------------------------------------------------------  160 (287)
T ss_pred             --ccHHHHHhhhc-------------------------------------------------------------------
Confidence              99988876542                                                                   


Q ss_pred             CcceEEEEeCCCCCChHHHHHHHhCCCCCCCC-ce-ecCCCCCceeEeeeeEEecCCCcEEEEeCCCCCCCCCCCHHHHH
Q psy15351        166 VYNTTVMVVGVPNVGKSSIINALRSSHMKKGK-AV-PVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLECGM  243 (352)
Q Consensus       166 ~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~-~~-~~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~~~~~~~~~~~~  243 (352)
                        +..++++|.+|||||||||+|.+....... .. ..+..++||+..+ .+....  ..+++||||+....+.....  
T Consensus       161 --~k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~-~~~~~~--~~~liDtPG~~~~~~~~~~~--  233 (287)
T cd01854         161 --GKTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRE-LFPLPG--GGLLIDTPGFREFGLLHIDP--  233 (287)
T ss_pred             --cceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEE-EEEcCC--CCEEEECCCCCccCCccCCH--
Confidence              135899999999999999999974221111 11 1223445788764 444432  35899999998754221111  


Q ss_pred             HHHHHhhhhhhccchhhhhHhHHhhhcCCCCCcccccccCCCCCccHHHHHH
Q psy15351        244 RLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLA  295 (352)
Q Consensus       244 ~l~~~~~i~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~l~~~~~~~~~~l~  295 (352)
                                     .++.+++-.+......|.|.+|.+..+|.+.+.+.++
T Consensus       234 ---------------~~~~~~f~~~~~~~~~C~F~~C~H~~Ep~Cav~~av~  270 (287)
T cd01854         234 ---------------EELAHYFPEFRELAGQCKFRDCTHTNEPGCAVKAAVE  270 (287)
T ss_pred             ---------------HHHHHHhHHHHHHhCCCCCCCCcCCCCCCCHHHHHHH
Confidence                           1112222222233456889999999999997766553

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.87  E-value=4.2e-21  Score=189.24  Aligned_cols=164  Identities=21%  Similarity=0.209  Sum_probs=121.4

Q ss_pred             HHHHHHHhhccCEEEEEEcCCCCCCCcCHHHHHHHh-CCCCEEEEEEcccCCCccchHHHHHHHHhhcCCCCcEEEeecC
Q psy15351          5 LKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQ-NIRPMVLVLNKRDLINSKHESLIEEKVRKEQSHISEVIFTNCR   83 (352)
Q Consensus         5 ~~~~~~~i~~aD~vl~VvDar~p~~~~~~~l~~~l~-~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~v~~iSa~   83 (352)
                      .+++...+..||++|+|+|++++.+..+..+..+++ .++|+++|+||+|+...+.  +..+.+ ..+..  .++.+||+
T Consensus       108 ~~~~~~~~~~aD~il~VvD~~~~~s~~~~~i~~~l~~~~~piilV~NK~Dl~~~~~--~~~~~~-~~g~~--~~~~iSA~  182 (472)
T PRK03003        108 AEQAEVAMRTADAVLFVVDATVGATATDEAVARVLRRSGKPVILAANKVDDERGEA--DAAALW-SLGLG--EPHPVSAL  182 (472)
T ss_pred             HHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECccCCccch--hhHHHH-hcCCC--CeEEEEcC
Confidence            345667899999999999999887766666666665 6899999999999865331  222222 33443  46899999


Q ss_pred             CCCCCCHHHHHHHHHHHhhhccccccccccceeEEEeccCCCCchhHHHHHhhhhcccCCCCCCCcchhhhhcccccccc
Q psy15351         84 NPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHR  163 (352)
Q Consensus        84 ~~~~~gi~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~nvgksslin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (352)
                      ++  .|+++|++++.+.++....                                              .        ..
T Consensus       183 ~g--~gi~eL~~~i~~~l~~~~~----------------------------------------------~--------~~  206 (472)
T PRK03003        183 HG--RGVGDLLDAVLAALPEVPR----------------------------------------------V--------GS  206 (472)
T ss_pred             CC--CCcHHHHHHHHhhcccccc----------------------------------------------c--------cc
Confidence            99  9999999998765543110                                              0        00


Q ss_pred             ccCcceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCCcEEEEeCCCCCCC
Q psy15351        164 TEVYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLP  234 (352)
Q Consensus       164 ~~~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~~~  234 (352)
                      .....++|+++|.||||||||+|+|++     .....+++.||+|++.........+..+.++||||+...
T Consensus       207 ~~~~~~kI~iiG~~nvGKSSLin~l~~-----~~~~~~s~~~gtT~d~~~~~~~~~~~~~~l~DTaG~~~~  272 (472)
T PRK03003        207 ASGGPRRVALVGKPNVGKSSLLNKLAG-----EERSVVDDVAGTTVDPVDSLIELGGKTWRFVDTAGLRRR  272 (472)
T ss_pred             ccccceEEEEECCCCCCHHHHHHHHhC-----CCcccccCCCCccCCcceEEEEECCEEEEEEECCCcccc
Confidence            012358999999999999999999997     445678899999998765444445667899999998653

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.85  E-value=3.3e-20  Score=191.07  Aligned_cols=166  Identities=24%  Similarity=0.235  Sum_probs=123.3

Q ss_pred             HHHHHHHhhccCEEEEEEcCCCCCCCcCHHHHHHHh-CCCCEEEEEEcccCCCccchHHHHHHHHhhcCCCCcEEEeecC
Q psy15351          5 LKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQ-NIRPMVLVLNKRDLINSKHESLIEEKVRKEQSHISEVIFTNCR   83 (352)
Q Consensus         5 ~~~~~~~i~~aD~vl~VvDar~p~~~~~~~l~~~l~-~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~v~~iSa~   83 (352)
                      .+++...++.+|++|+|+|++.++...+..+.++++ .++|+++|+||+|+.....  ...+++ ..+..  .++++||+
T Consensus       345 ~~~~~~~~~~aD~iL~VvDa~~~~~~~d~~i~~~Lr~~~~pvIlV~NK~D~~~~~~--~~~~~~-~lg~~--~~~~iSA~  419 (712)
T PRK09518        345 ASQAQIAVSLADAVVFVVDGQVGLTSTDERIVRMLRRAGKPVVLAVNKIDDQASEY--DAAEFW-KLGLG--EPYPISAM  419 (712)
T ss_pred             HHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEECcccccchh--hHHHHH-HcCCC--CeEEEECC
Confidence            456778899999999999999887777777777666 7899999999999865431  222222 33443  57899999


Q ss_pred             CCCCCCHHHHHHHHHHHhhhccccccccccceeEEEeccCCCCchhHHHHHhhhhcccCCCCCCCcchhhhhcccccccc
Q psy15351         84 NPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHR  163 (352)
Q Consensus        84 ~~~~~gi~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~nvgksslin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (352)
                      ++  .|+.+|+++|.+.++.....                                                .   .. -
T Consensus       420 ~g--~GI~eLl~~i~~~l~~~~~~------------------------------------------------~---~a-~  445 (712)
T PRK09518        420 HG--RGVGDLLDEALDSLKVAEKT------------------------------------------------S---GF-L  445 (712)
T ss_pred             CC--CCchHHHHHHHHhccccccc------------------------------------------------c---cc-c
Confidence            99  99999999987765431100                                                0   00 0


Q ss_pred             ccCcceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCCcEEEEeCCCCCCC
Q psy15351        164 TEVYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLP  234 (352)
Q Consensus       164 ~~~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~~~  234 (352)
                      .....++|+++|.||||||||+|+|++     .....+++.||||++.........+..+.++||||+...
T Consensus       446 ~~~~~~kI~ivG~~nvGKSSLin~l~~-----~~~~~v~~~~gtT~d~~~~~~~~~~~~~~liDTaG~~~~  511 (712)
T PRK09518        446 TPSGLRRVALVGRPNVGKSSLLNQLTH-----EERAVVNDLAGTTRDPVDEIVEIDGEDWLFIDTAGIKRR  511 (712)
T ss_pred             CCCCCcEEEEECCCCCCHHHHHHHHhC-----ccccccCCCCCCCcCcceeEEEECCCEEEEEECCCcccC
Confidence            011347899999999999999999997     455677899999999876544456667999999999754

>COG1162 Predicted GTPases [General function prediction only]

Probab=99.80  E-value=3.7e-18  Score=154.49  Aligned_cols=189  Identities=22%  Similarity=0.274  Sum_probs=125.2

Q ss_pred             HhhccCEEEEEEcCCCCCCCcCHHHHHHHh----CCCCEEEEEEcccCCCccchH--HHHHHHHhhcCCCCcEEEeecCC
Q psy15351         11 HLKNVDIVIEVHDSRMPFTGRNHLLQQSVQ----NIRPMVLVLNKRDLINSKHES--LIEEKVRKEQSHISEVIFTNCRN   84 (352)
Q Consensus        11 ~i~~aD~vl~VvDar~p~~~~~~~l~~~l~----~~k~~ilVlNK~Dl~~~~~~~--~~~~~~~~~~~~~~~v~~iSa~~   84 (352)
                      .+.++|-+++|+-+-+|..+. ..+.+++-    .+..-++|+||+||++.+...  ++...+.+.|+.   ++.+|+++
T Consensus        76 ~v~n~d~~iiIvs~~~P~~~~-~~ldR~Lv~ae~~gi~pvIvlnK~DL~~~~~~~~~~~~~~y~~~gy~---v~~~s~~~  151 (301)
T COG1162          76 PVANNDQAIIVVSLVDPDFNT-NLLDRYLVLAEAGGIEPVIVLNKIDLLDDEEAAVKELLREYEDIGYP---VLFVSAKN  151 (301)
T ss_pred             cccccceEEEEEeccCCCCCH-HHHHHHHHHHHHcCCcEEEEEEccccCcchHHHHHHHHHHHHhCCee---EEEecCcC
Confidence            456688888888888775443 23445442    455558899999999887644  567777778887   99999999


Q ss_pred             CCCCCHHHHHHHHHHHhhhccccccccccceeEEEeccCCCCchhHHHHHhhhhcccCCCCCCCcchhhhhccccccccc
Q psy15351         85 PNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRT  164 (352)
Q Consensus        85 ~~~~gi~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~nvgksslin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (352)
                      +  .|+++|.+.+.                                                                  
T Consensus       152 ~--~~~~~l~~~l~------------------------------------------------------------------  163 (301)
T COG1162         152 G--DGLEELAELLA------------------------------------------------------------------  163 (301)
T ss_pred             c--ccHHHHHHHhc------------------------------------------------------------------
Confidence            9  99998876653                                                                  


Q ss_pred             cCcceEEEEeCCCCCChHHHHHHHhCCC-CCCCCceecC-CCCCceeEeeeeEEecCCCcEEEEeCCCCCCCCCCCHHHH
Q psy15351        165 EVYNTTVMVVGVPNVGKSSIINALRSSH-MKKGKAVPVG-PKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLECG  242 (352)
Q Consensus       165 ~~~~~~v~i~G~pnvGKStliN~l~~~~-~~~~~~~~~~-~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~~~~~~~~~~~  242 (352)
                         +-..+++|.+|||||||+|+|.+.. ...+...... .--.||++. ..+.+..  ..+++|||||....+...+  
T Consensus       164 ---~~~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~-~l~~l~~--gG~iiDTPGf~~~~l~~~~--  235 (301)
T COG1162         164 ---GKITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHV-ELFPLPG--GGWIIDTPGFRSLGLAHLE--  235 (301)
T ss_pred             ---CCeEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceE-EEEEcCC--CCEEEeCCCCCccCcccCC--
Confidence               1146678888888899988888631 1111111111 233466665 3455432  3689999999988763221  


Q ss_pred             HHHHHHhhhhhhccchhhhhHhHHhhhcCCCCCcccccccCCCCCccHHHHH
Q psy15351        243 MRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLL  294 (352)
Q Consensus       243 ~~l~~~~~i~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~l~~~~~~~~~~l  294 (352)
                                     ++.+..++...-+....|.|.+|.+..+|.+.+.+-+
T Consensus       236 ---------------~e~l~~~F~ef~~~~~~CkFr~C~H~~EPgCav~~av  272 (301)
T COG1162         236 ---------------PEDLVQAFPEFAELARQCKFRDCTHTHEPGCAVKAAV  272 (301)
T ss_pred             ---------------HHHHHHHhHHHHHHhcCCCCCCCCCCCCCCcHHHHHH
Confidence                           1222333333444455688999999999999766544

>PRK01889 GTPase RsgA; Reviewed

Probab=99.72  E-value=9.9e-17  Score=152.24  Aligned_cols=145  Identities=23%  Similarity=0.240  Sum_probs=96.7

Q ss_pred             HhhccCEEEEEEcCCCCCCCcCHHHHHHHh----CCCCEEEEEEcccCCCccchHHHHHHHH--hhcCCCCcEEEeecCC
Q psy15351         11 HLKNVDIVIEVHDSRMPFTGRNHLLQQSVQ----NIRPMVLVLNKRDLINSKHESLIEEKVR--KEQSHISEVIFTNCRN   84 (352)
Q Consensus        11 ~i~~aD~vl~VvDar~p~~~~~~~l~~~l~----~~k~~ilVlNK~Dl~~~~~~~~~~~~~~--~~~~~~~~v~~iSa~~   84 (352)
                      .++++|.+++|+++..++..  ..+.+++.    .+.+.++|+||+||++..  +.+.+++.  ..+++   ++++|+++
T Consensus       109 iaANvD~vliV~s~~p~~~~--~~ldr~L~~a~~~~i~piIVLNK~DL~~~~--~~~~~~~~~~~~g~~---Vi~vSa~~  181 (356)
T PRK01889        109 IAANVDTVFIVCSLNHDFNL--RRIERYLALAWESGAEPVIVLTKADLCEDA--EEKIAEVEALAPGVP---VLAVSALD  181 (356)
T ss_pred             EEEeCCEEEEEEecCCCCCh--hHHHHHHHHHHHcCCCEEEEEEChhcCCCH--HHHHHHHHHhCCCCc---EEEEECCC
Confidence            47999999999999643332  24445542    567779999999998752  22333332  23454   99999999


Q ss_pred             CCCCCHHHHHHHHHHHhhhccccccccccceeEEEeccCCCCchhHHHHHhhhhcccCCCCCCCcchhhhhccccccccc
Q psy15351         85 PNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRT  164 (352)
Q Consensus        85 ~~~~gi~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~nvgksslin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (352)
                      +  .|+++|.+++.                                                                  
T Consensus       182 g--~gl~~L~~~L~------------------------------------------------------------------  193 (356)
T PRK01889        182 G--EGLDVLAAWLS------------------------------------------------------------------  193 (356)
T ss_pred             C--ccHHHHHHHhh------------------------------------------------------------------
Confidence            9  99999877652                                                                  


Q ss_pred             cCcceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCC-------CCCceeEeeeeEEecCCCcEEEEeCCCCCCCCCC
Q psy15351        165 EVYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGP-------KAGVTRSVMSQVKISEKPLIYILDTPGISLPRID  237 (352)
Q Consensus       165 ~~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~-------~pg~T~~~~~~~~~~~~~~~~l~DtPGi~~~~~~  237 (352)
                        .+-+++++|.||+|||||+|+|.+..     ...++.       ...+|+..+ ...+..  ..+++||||+..+.+.
T Consensus       194 --~g~~~~lvG~sgvGKStLin~L~g~~-----~~~~G~i~~~~~~g~~tt~~~~-l~~l~~--~~~l~DtpG~~~~~l~  263 (356)
T PRK01889        194 --GGKTVALLGSSGVGKSTLVNALLGEE-----VQKTGAVREDDSKGRHTTTHRE-LHPLPS--GGLLIDTPGMRELQLW  263 (356)
T ss_pred             --cCCEEEEECCCCccHHHHHHHHHHhc-----ccceeeEEECCCCCcchhhhcc-EEEecC--CCeecCCCchhhhccc
Confidence              12358999999999999999998732     222222       122454432 333333  3579999999887665


Q ss_pred             CHH
Q psy15351        238 NLE  240 (352)
Q Consensus       238 ~~~  240 (352)
                      +.+
T Consensus       264 ~~~  266 (356)
T PRK01889        264 DAE  266 (356)
T ss_pred             Cch
Confidence            544

>COG1159 Era GTPase [General function prediction only]

Probab=99.68  E-value=2.2e-16  Score=141.71  Aligned_cols=92  Identities=37%  Similarity=0.538  Sum_probs=73.3

Q ss_pred             ceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCCcEEEEeCCCCCCCCCCCHHHHHHHHH
Q psy15351        168 NTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLECGMRLAA  247 (352)
Q Consensus       168 ~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~~~~~~~~~~~~~l~~  247 (352)
                      ...|+++|.||||||||+|+|.|     .+.+.+|+.|.|||+.+.++...++.++.|+||||+..|+.. ....+..++
T Consensus         6 sGfVaIiGrPNvGKSTLlN~l~G-----~KisIvS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~pk~~-l~~~m~~~a   79 (298)
T COG1159           6 SGFVAIIGRPNVGKSTLLNALVG-----QKISIVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKPKHA-LGELMNKAA   79 (298)
T ss_pred             EEEEEEEcCCCCcHHHHHHHHhc-----CceEeecCCcchhhhheeEEEEcCCceEEEEeCCCCCCcchH-HHHHHHHHH
Confidence            35699999999999999999998     799999999999999999888888889999999999998543 333344444


Q ss_pred             HhhhhhhccchhhhhHhHHhhhcCCC
Q psy15351        248 CATLQDHLVGEINIADYILFYLNRTG  273 (352)
Q Consensus       248 ~~~i~~~~~~~~~~~~~il~~~~~~~  273 (352)
                      ..++.+        +|.++++++...
T Consensus        80 ~~sl~d--------vDlilfvvd~~~   97 (298)
T COG1159          80 RSALKD--------VDLILFVVDADE   97 (298)
T ss_pred             HHHhcc--------CcEEEEEEeccc
Confidence            455555        666666666543

>COG1084 Predicted GTPase [General function prediction only]

Probab=99.59  E-value=2.3e-15  Score=136.37  Aligned_cols=111  Identities=26%  Similarity=0.332  Sum_probs=86.0

Q ss_pred             hhhccccccccccCcceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCCcEEEEeCCCCC
Q psy15351        153 HISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGIS  232 (352)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~  232 (352)
                      +....+.+++.-.+...++.++|+||||||||++++++      ....+.++|+||+...-++...+..+++++||||+.
T Consensus       153 ~~r~~l~~LP~Idp~~pTivVaG~PNVGKSSlv~~lT~------AkpEvA~YPFTTK~i~vGhfe~~~~R~QvIDTPGlL  226 (346)
T COG1084         153 KARDHLKKLPAIDPDLPTIVVAGYPNVGKSSLVRKLTT------AKPEVAPYPFTTKGIHVGHFERGYLRIQVIDTPGLL  226 (346)
T ss_pred             HHHHHHhcCCCCCCCCCeEEEecCCCCcHHHHHHHHhc------CCCccCCCCccccceeEeeeecCCceEEEecCCccc
Confidence            33445556666677889999999999999999999994      678999999999999888888777789999999999


Q ss_pred             CCCCCCHHHHHHHHHHhhhhhhccchhhhhHhHHhhhcCCCCCcc
Q psy15351        233 LPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRY  277 (352)
Q Consensus       233 ~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~il~~~~~~~~~~~  277 (352)
                      +...+......+.|+.. +       ..+.+.++|+++....|.|
T Consensus       227 DRPl~ErN~IE~qAi~A-L-------~hl~~~IlF~~D~Se~cgy  263 (346)
T COG1084         227 DRPLEERNEIERQAILA-L-------RHLAGVILFLFDPSETCGY  263 (346)
T ss_pred             CCChHHhcHHHHHHHHH-H-------HHhcCeEEEEEcCccccCC
Confidence            98766555555555321 1       2346777888887766544

>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis

Probab=99.59  E-value=7e-15  Score=122.73  Aligned_cols=140  Identities=23%  Similarity=0.343  Sum_probs=84.5

Q ss_pred             HHHHHHHHhhcCCCCcEEEeecCCCCCCCHHHHHHHHHHHhhhccccccccccceeEEEeccCCCCchhHHHHHhhhhcc
Q psy15351         61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIINALRSSHMK  140 (352)
Q Consensus        61 ~~~~~~~~~~~~~~~~v~~iSa~~~~~~gi~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~nvgksslin~l~~~~~~  140 (352)
                      ++|.+.|++.|++   ++++|++++  +|+++|.+.+.                                          
T Consensus         2 ~~~~~~y~~~gy~---v~~~S~~~~--~g~~~l~~~l~------------------------------------------   34 (161)
T PF03193_consen    2 EELLEQYEKLGYP---VFFISAKTG--EGIEELKELLK------------------------------------------   34 (161)
T ss_dssp             HHHHHHHHHTTSE---EEE-BTTTT--TTHHHHHHHHT------------------------------------------
T ss_pred             HHHHHHHHHcCCc---EEEEeCCCC--cCHHHHHHHhc------------------------------------------
Confidence            5788889888987   999999999  99999877653                                          


Q ss_pred             cCCCCCCCcchhhhhccccccccccCcceEEEEeCCCCCChHHHHHHHhCCCCC-CCCcee-cCCCCCceeEeeeeEEec
Q psy15351        141 KGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIINALRSSHMK-KGKAVP-VGPKAGVTRSVMSQVKIS  218 (352)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~G~pnvGKStliN~l~~~~~~-~~~~~~-~~~~pg~T~~~~~~~~~~  218 (352)
                                                 +..++++|.+|||||||||+|.+.... ...... .+.--.||+..+ .+...
T Consensus        35 ---------------------------~k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~-l~~l~   86 (161)
T PF03193_consen   35 ---------------------------GKTSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHRE-LFPLP   86 (161)
T ss_dssp             ---------------------------TSEEEEECSTTSSHHHHHHHHHTSS----S--------------SEE-EEEET
T ss_pred             ---------------------------CCEEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCee-EEecC
Confidence                                       135788999999999999999975211 111111 122334566543 45543


Q ss_pred             CCCcEEEEeCCCCCCCCCCCHHHHHHHHHHhhhhhhccchhhhhHhHHhhhcCCCCCcccccccCCCCCccHHHHH
Q psy15351        219 EKPLIYILDTPGISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLL  294 (352)
Q Consensus       219 ~~~~~~l~DtPGi~~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~l~~~~~~~~~~l  294 (352)
                      .  ..+++|||||....+.+.+.                 +.++.++..+-.-...|.|.+|.+..+|.+.+.+-+
T Consensus        87 ~--g~~iIDTPGf~~~~l~~~~~-----------------~~l~~~F~e~~~~~~~CkF~~C~H~~Ep~CaV~~av  143 (161)
T PF03193_consen   87 D--GGYIIDTPGFRSFGLWHIDP-----------------EELAQYFPEFRPLAGQCKFRDCTHIHEPGCAVKAAV  143 (161)
T ss_dssp             T--SEEEECSHHHHT--GCCS-H-----------------HHHHHCSGGGHHHTTHSSSTTTTSSSSTT-HHHHHH
T ss_pred             C--CcEEEECCCCCccccccCCH-----------------HHHHHHHHHhccccCCCCccCCCCCCCCCChHHHHH
Confidence            3  58999999999876653221                 111222222222234578889999999998766544

RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.58  E-value=3.3e-15  Score=141.28  Aligned_cols=67  Identities=31%  Similarity=0.388  Sum_probs=56.9

Q ss_pred             eEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCCcEEEEeCCCCCCCCCCCHH
Q psy15351        169 TTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE  240 (352)
Q Consensus       169 ~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~~~~~~~~~  240 (352)
                      ..|+++|+||||||||+|+|++     ++.+.|++.||+||+.........+..+.++||+|+.....+...
T Consensus         4 ~~VAIVGRPNVGKSTLFNRL~g-----~r~AIV~D~pGvTRDr~y~~~~~~~~~f~lIDTgGl~~~~~~~l~   70 (444)
T COG1160           4 PVVAIVGRPNVGKSTLFNRLTG-----RRIAIVSDTPGVTRDRIYGDAEWLGREFILIDTGGLDDGDEDELQ   70 (444)
T ss_pred             CEEEEECCCCCcHHHHHHHHhC-----CeeeEeecCCCCccCCccceeEEcCceEEEEECCCCCcCCchHHH
Confidence            5699999999999999999998     788999999999999987655556677999999999975433333

>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions

Probab=99.56  E-value=8.9e-15  Score=121.93  Aligned_cols=69  Identities=29%  Similarity=0.348  Sum_probs=53.2

Q ss_pred             eEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCCcEEEEeCCCCCCCCCCCHHHHH
Q psy15351        169 TTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLECGM  243 (352)
Q Consensus       169 ~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~~~~~~~~~~~~  243 (352)
                      ++|+++|.||||||||+|+|++      ..+.+++.||+|.+...+.....+..+.++||||+.+....+.++..
T Consensus         1 i~ialvG~PNvGKStLfN~Ltg------~~~~v~n~pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~s~ee~v   69 (156)
T PF02421_consen    1 IRIALVGNPNVGKSTLFNALTG------AKQKVGNWPGTTVEKKEGIFKLGDQQVELVDLPGIYSLSSKSEEERV   69 (156)
T ss_dssp             -EEEEEESTTSSHHHHHHHHHT------TSEEEEESTTSSSEEEEEEEEETTEEEEEEE----SSSSSSSHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHC------CCceecCCCCCCeeeeeEEEEecCceEEEEECCCcccCCCCCcHHHH
Confidence            5799999999999999999997      34889999999999877666556678999999999987655555544

FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....

>COG0486 ThdF Predicted GTPase [General function prediction only]

Probab=99.49  E-value=4.5e-14  Score=134.01  Aligned_cols=64  Identities=34%  Similarity=0.417  Sum_probs=58.0

Q ss_pred             CcceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCCcEEEEeCCCCCCC
Q psy15351        166 VYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLP  234 (352)
Q Consensus       166 ~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~~~  234 (352)
                      ..+++++++|.||||||||+|+|.+     +..+.|++.|||||+..+.....++-.+.++||.|+...
T Consensus       215 r~G~kvvIiG~PNvGKSSLLNaL~~-----~d~AIVTdI~GTTRDviee~i~i~G~pv~l~DTAGiRet  278 (454)
T COG0486         215 REGLKVVIIGRPNVGKSSLLNALLG-----RDRAIVTDIAGTTRDVIEEDINLNGIPVRLVDTAGIRET  278 (454)
T ss_pred             hcCceEEEECCCCCcHHHHHHHHhc-----CCceEecCCCCCccceEEEEEEECCEEEEEEecCCcccC
Confidence            4689999999999999999999998     788999999999999998666666778999999999965

>PTZ00258 GTP-binding protein; Provisional

Probab=99.48  E-value=1.1e-13  Score=131.48  Aligned_cols=110  Identities=22%  Similarity=0.190  Sum_probs=75.6

Q ss_pred             CcceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCC-----------------CcEEEEeC
Q psy15351        166 VYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEK-----------------PLIYILDT  228 (352)
Q Consensus       166 ~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~-----------------~~~~l~Dt  228 (352)
                      ...++|+++|.||||||||+|+|++      ..+.+++.||||+++..+.....+                 .++.++||
T Consensus        19 ~~~~kvgIVG~PNvGKSTLfnaLt~------~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDt   92 (390)
T PTZ00258         19 GNNLKMGIVGLPNVGKSTTFNALCK------QQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDI   92 (390)
T ss_pred             CCCcEEEEECCCCCChHHHHHHHhc------CcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEEC
Confidence            4678999999999999999999985      457899999999998765543332                 25899999


Q ss_pred             CCCCCCCCCCHHHHHHHHHHhhhhhhccchhhhhHhHHhhhcCCCCCcccccccCCCCCccHH
Q psy15351        229 PGISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIV  291 (352)
Q Consensus       229 PGi~~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~l~~~~~~~~  291 (352)
                      ||+......  ..++...+...+++        +|.++++++.....+.....+-.+|..++.
T Consensus        93 pGLv~ga~~--g~gLg~~fL~~Ir~--------aD~il~VVd~f~d~~v~h~~~~~dp~~d~~  145 (390)
T PTZ00258         93 AGLVKGASE--GEGLGNAFLSHIRA--------VDGIYHVVRAFEDEDITHVEGEIDPVRDLE  145 (390)
T ss_pred             CCcCcCCcc--hhHHHHHHHHHHHH--------CCEEEEEEeCCCCCCccccCCCCCHHHHHH
Confidence            999975322  22332233344444        888999999765544333333334444443

>PRK09601 GTP-binding protein YchF; Reviewed

Probab=99.44  E-value=2.9e-13  Score=127.29  Aligned_cols=90  Identities=22%  Similarity=0.229  Sum_probs=65.4

Q ss_pred             eEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCC-----------------CcEEEEeCCCC
Q psy15351        169 TTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEK-----------------PLIYILDTPGI  231 (352)
Q Consensus       169 ~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~-----------------~~~~l~DtPGi  231 (352)
                      ++|+++|.||||||||+|+|++      ..+.+++.||||+++..++....+                 .++.++||||+
T Consensus         3 ~~vgIVG~PNvGKSTLfnaLt~------~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL   76 (364)
T PRK09601          3 LKCGIVGLPNVGKSTLFNALTK------AGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGL   76 (364)
T ss_pred             cEEEEECCCCCCHHHHHHHHhC------CCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCC
Confidence            6899999999999999999996      337899999999998754433332                 14899999999


Q ss_pred             CCCCCCCHHHHHHHHHHhhhhhhccchhhhhHhHHhhhcCCCC
Q psy15351        232 SLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGN  274 (352)
Q Consensus       232 ~~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~il~~~~~~~~  274 (352)
                      ....  +...++.......+++        +|.+++|++....
T Consensus        77 ~~~a--~~g~glg~~fL~~i~~--------aD~li~VVd~f~d  109 (364)
T PRK09601         77 VKGA--SKGEGLGNQFLANIRE--------VDAIVHVVRCFED  109 (364)
T ss_pred             CCCC--ChHHHHHHHHHHHHHh--------CCEEEEEEeCCcc
Confidence            9753  2223333333344443        8888899987643

>cd01900 YchF YchF subfamily

Probab=99.43  E-value=2.3e-13  Score=124.05  Aligned_cols=103  Identities=19%  Similarity=0.200  Sum_probs=69.1

Q ss_pred             EEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCC-----------------cEEEEeCCCCCC
Q psy15351        171 VMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKP-----------------LIYILDTPGISL  233 (352)
Q Consensus       171 v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~-----------------~~~l~DtPGi~~  233 (352)
                      ++++|.||||||||+|+|++      ....+++.||||+++..+.....+.                 ++.++||||+..
T Consensus         1 igivG~PN~GKSTLfn~Lt~------~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~   74 (274)
T cd01900           1 IGIVGLPNVGKSTLFNALTK------AGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVK   74 (274)
T ss_pred             CeEeCCCCCcHHHHHHHHhC------CCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCC
Confidence            58999999999999999996      3348899999999987644433332                 489999999996


Q ss_pred             CCCCCHHHHHHHHHHhhhhhhccchhhhhHhHHhhhcCCCCCcccccccCCCCCcc
Q psy15351        234 PRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDD  289 (352)
Q Consensus       234 ~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~l~~~~~~  289 (352)
                      ..  +...++...+...++.        +|.+++|++.....+.....+-.+|..|
T Consensus        75 ~a--~~~~glg~~fL~~i~~--------~D~li~VV~~f~d~~~~~~~~~~dp~~d  120 (274)
T cd01900          75 GA--SKGEGLGNKFLSHIRE--------VDAIAHVVRCFEDDDITHVEGSVDPVRD  120 (274)
T ss_pred             CC--chhhHHHHHHHHHHHh--------CCEEEEEEeCcCCCCccCCCCCCCHHHH
Confidence            53  2233333333344443        8888999987654443332232234443

YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.

>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse

Probab=99.41  E-value=2e-13  Score=108.93  Aligned_cols=60  Identities=37%  Similarity=0.483  Sum_probs=50.2

Q ss_pred             EEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCCcEEEEeCCCCCCC
Q psy15351        170 TVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLP  234 (352)
Q Consensus       170 ~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~~~  234 (352)
                      +|+++|.||+|||||+|+|++     .....++..+++|+..........+..+.++||||+...
T Consensus         1 ~V~iiG~~~~GKSTlin~l~~-----~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~vDtpG~~~~   60 (116)
T PF01926_consen    1 RVAIIGRPNVGKSTLINALTG-----KKLAKVSNIPGTTRDPVYGQFEYNNKKFILVDTPGINDG   60 (116)
T ss_dssp             EEEEEESTTSSHHHHHHHHHT-----STSSEESSSTTSSSSEEEEEEEETTEEEEEEESSSCSSS
T ss_pred             CEEEECCCCCCHHHHHHHHhc-----cccccccccccceeeeeeeeeeeceeeEEEEeCCCCccc
Confidence            589999999999999999997     456789999999999854333345567899999999876

These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....

>PRK12298 obgE GTPase CgtA; Reviewed

Probab=99.37  E-value=4.1e-12  Score=121.84  Aligned_cols=61  Identities=25%  Similarity=0.262  Sum_probs=50.9

Q ss_pred             eEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCC-CcEEEEeCCCCCCCC
Q psy15351        169 TTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEK-PLIYILDTPGISLPR  235 (352)
Q Consensus       169 ~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~-~~~~l~DtPGi~~~~  235 (352)
                      ..|+++|+||||||||+|+|++      ..+.+++.|+||+.+...+....+ .++.|+||||+..+.
T Consensus       160 adValVG~PNaGKSTLln~Lt~------~k~~vs~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a  221 (390)
T PRK12298        160 ADVGLLGLPNAGKSTFIRAVSA------AKPKVADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGA  221 (390)
T ss_pred             ccEEEEcCCCCCHHHHHHHHhC------CcccccCCCCCccCcEEEEEEeCCCcEEEEEeCCCccccc
Confidence            4699999999999999999996      335899999999998876654443 359999999998764

>KOG1191|consensus

Probab=99.37  E-value=6.6e-13  Score=125.90  Aligned_cols=63  Identities=33%  Similarity=0.446  Sum_probs=57.4

Q ss_pred             CcceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCCcEEEEeCCCCCC
Q psy15351        166 VYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISL  233 (352)
Q Consensus       166 ~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~~  233 (352)
                      ..++.|+++|.||||||||+|+|.+     ...+.|++.|||||+........++..++|+||.|+..
T Consensus       266 q~gl~iaIvGrPNvGKSSLlNaL~~-----~drsIVSpv~GTTRDaiea~v~~~G~~v~L~DTAGiRe  328 (531)
T KOG1191|consen  266 QSGLQIAIVGRPNVGKSSLLNALSR-----EDRSIVSPVPGTTRDAIEAQVTVNGVPVRLSDTAGIRE  328 (531)
T ss_pred             hcCCeEEEEcCCCCCHHHHHHHHhc-----CCceEeCCCCCcchhhheeEeecCCeEEEEEecccccc
Confidence            4579999999999999999999998     68899999999999998866667788899999999998

>TIGR00436 era GTP-binding protein Era

Probab=99.36  E-value=1.3e-12  Score=119.98  Aligned_cols=60  Identities=37%  Similarity=0.561  Sum_probs=52.3

Q ss_pred             EEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCCcEEEEeCCCCCCC
Q psy15351        170 TVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLP  234 (352)
Q Consensus       170 ~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~~~  234 (352)
                      +|+++|.||||||||+|+|.+     .+.+.+++.|+||++....+...++.++.|+||||+..+
T Consensus         2 ~V~liG~pnvGKSTLln~L~~-----~~~~~vs~~~~TTr~~i~~i~~~~~~qii~vDTPG~~~~   61 (270)
T TIGR00436         2 FVAILGRPNVGKSTLLNQLHG-----QKISITSPKAQTTRNRISGIHTTGASQIIFIDTPGFHEK   61 (270)
T ss_pred             EEEEECCCCCCHHHHHHHHhC-----CcEeecCCCCCcccCcEEEEEEcCCcEEEEEECcCCCCC
Confidence            589999999999999999997     566789999999999776666666668999999999876

Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.

>COG0218 Predicted GTPase [General function prediction only]

Probab=99.32  E-value=1.7e-11  Score=104.67  Aligned_cols=64  Identities=25%  Similarity=0.402  Sum_probs=52.9

Q ss_pred             cceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCCcEEEEeCCCCCCCCCC
Q psy15351        167 YNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRID  237 (352)
Q Consensus       167 ~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~~~~~~  237 (352)
                      ....|+++|++|||||||||+|+++    +..+++|.+||.|+... .+.+.+  .+.++|.||++..+..
T Consensus        23 ~~~EIaF~GRSNVGKSSlIN~l~~~----k~LArtSktPGrTq~iN-ff~~~~--~~~lVDlPGYGyAkv~   86 (200)
T COG0218          23 DLPEIAFAGRSNVGKSSLINALTNQ----KNLARTSKTPGRTQLIN-FFEVDD--ELRLVDLPGYGYAKVP   86 (200)
T ss_pred             CCcEEEEEccCcccHHHHHHHHhCC----cceeecCCCCCccceeE-EEEecC--cEEEEeCCCcccccCC
Confidence            5578999999999999999999973    45699999999999864 454433  4899999999987543

>KOG1423|consensus

Probab=99.32  E-value=2.6e-12  Score=115.20  Aligned_cols=67  Identities=30%  Similarity=0.427  Sum_probs=61.0

Q ss_pred             cCcceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCCcEEEEeCCCCCCCCC
Q psy15351        165 EVYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRI  236 (352)
Q Consensus       165 ~~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~~~~~  236 (352)
                      ..+-..|+++|.||||||||.|.+.+     .+.+.++..+.|||+...++...+..++.|+||||++.+..
T Consensus        69 ~~k~L~vavIG~PNvGKStLtN~mig-----~kv~~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~  135 (379)
T KOG1423|consen   69 AQKSLYVAVIGAPNVGKSTLTNQMIG-----QKVSAVSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKM  135 (379)
T ss_pred             cceEEEEEEEcCCCcchhhhhhHhhC-----CccccccccccceeeeeeEEEecCceEEEEecCCcccccch
Confidence            45678999999999999999999998     78899999999999988888888888999999999998754

>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]

Probab=99.31  E-value=2.4e-12  Score=119.44  Aligned_cols=107  Identities=21%  Similarity=0.257  Sum_probs=78.3

Q ss_pred             ceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCC------------------CcEEEEeCC
Q psy15351        168 NTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEK------------------PLIYILDTP  229 (352)
Q Consensus       168 ~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~------------------~~~~l~DtP  229 (352)
                      .+++++||.||||||||+|+|+.      ..+..+++|+||.++..++....+                  ..+.|+|.+
T Consensus         2 ~l~~GIVGlPNVGKSTlFnAlT~------~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIA   75 (372)
T COG0012           2 SLKIGIVGLPNVGKSTLFNALTK------AGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIA   75 (372)
T ss_pred             CceeEEecCCCCcHHHHHHHHHc------CCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEec
Confidence            47899999999999999999995      448889999999998654332211                  148899999


Q ss_pred             CCCCCCCCCHHHHHHHHHHhhhhhhccchhhhhHhHHhhhcCCCCCcccccccCCCCCccH
Q psy15351        230 GISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDI  290 (352)
Q Consensus       230 Gi~~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~l~~~~~~~  290 (352)
                      |+...  .+.-+++--.+...|++        +|.|++|+++....+.....+-.+|..|+
T Consensus        76 GLV~G--As~GeGLGNkFL~~IRe--------vdaI~hVVr~f~d~di~hv~~~vDP~~DI  126 (372)
T COG0012          76 GLVKG--ASKGEGLGNKFLDNIRE--------VDAIIHVVRCFGDTDIEHVEGKVDPVEDI  126 (372)
T ss_pred             ccCCC--cccCCCcchHHHHhhhh--------cCeEEEEEEecCCCcccCCCCCcCcHHHH
Confidence            99987  33344554445555655        89999999988766655554545565554

>COG0536 Obg Predicted GTPase [General function prediction only]

Probab=99.26  E-value=1.2e-11  Score=112.97  Aligned_cols=62  Identities=23%  Similarity=0.298  Sum_probs=52.3

Q ss_pred             eEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeE-EecCCCcEEEEeCCCCCCCCC
Q psy15351        169 TTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQV-KISEKPLIYILDTPGISLPRI  236 (352)
Q Consensus       169 ~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~-~~~~~~~~~l~DtPGi~~~~~  236 (352)
                      --|++||+||+|||||||++..      ..+.++++|+||..+..++ ......++++-|.||++....
T Consensus       160 ADVGLVG~PNaGKSTlls~vS~------AkPKIadYpFTTL~PnLGvV~~~~~~sfv~ADIPGLIEGAs  222 (369)
T COG0536         160 ADVGLVGLPNAGKSTLLSAVSA------AKPKIADYPFTTLVPNLGVVRVDGGESFVVADIPGLIEGAS  222 (369)
T ss_pred             cccccccCCCCcHHHHHHHHhh------cCCcccCCccccccCcccEEEecCCCcEEEecCcccccccc
Confidence            3589999999999999999994      7789999999999987643 444566799999999998743

>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts)

Probab=99.24  E-value=1.6e-10  Score=104.48  Aligned_cols=65  Identities=26%  Similarity=0.319  Sum_probs=53.2

Q ss_pred             cCcceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCCcEEEEeCCCCCCC
Q psy15351        165 EVYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLP  234 (352)
Q Consensus       165 ~~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~~~  234 (352)
                      ....++|+++|.+|||||||+|+|.+     .....++..+++|+..+.......+..+.++||||+.+.
T Consensus        28 ~~~~~~IllvG~tGvGKSSliNaLlg-----~~~~~v~~~~~~T~~~~~~~~~~~g~~i~vIDTPGl~~~   92 (249)
T cd01853          28 LDFSLTILVLGKTGVGKSSTINSIFG-----ERKAATSAFQSETLRVREVSGTVDGFKLNIIDTPGLLES   92 (249)
T ss_pred             ccCCeEEEEECCCCCcHHHHHHHHhC-----CCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCcCcc
Confidence            45679999999999999999999998     455677888888887765444455667999999999876

This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.

>PRK09602 translation-associated GTPase; Reviewed

Probab=99.21  E-value=3e-11  Score=116.06  Aligned_cols=88  Identities=23%  Similarity=0.235  Sum_probs=62.8

Q ss_pred             eEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEec---------------------C---CCcEE
Q psy15351        169 TTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKIS---------------------E---KPLIY  224 (352)
Q Consensus       169 ~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~---------------------~---~~~~~  224 (352)
                      ++|+++|.||||||||+|+|++      ..+.+++.||+|+++..+....                     .   .-.+.
T Consensus         2 ~kigivG~pnvGKSTlfn~Lt~------~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~   75 (396)
T PRK09602          2 ITIGLVGKPNVGKSTFFNAATL------ADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVE   75 (396)
T ss_pred             cEEEEECCCCCCHHHHHHHHhC------CcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEE
Confidence            5799999999999999999996      3457789999999887643221                     1   12478


Q ss_pred             EEeCCCCCCCCCCCHHHHHHHHHHhhhhhhccchhhhhHhHHhhhcCC
Q psy15351        225 ILDTPGISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRT  272 (352)
Q Consensus       225 l~DtPGi~~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~il~~~~~~  272 (352)
                      ++||||+.....  ...++.......+++        +|.++++++..
T Consensus        76 i~D~aGl~~ga~--~g~glg~~fL~~ir~--------ad~ll~Vvd~~  113 (396)
T PRK09602         76 LIDVAGLVPGAH--EGRGLGNQFLDDLRQ--------ADALIHVVDAS  113 (396)
T ss_pred             EEEcCCcCCCcc--chhhHHHHHHHHHHH--------CCEEEEEEeCC
Confidence            999999987532  222333333444444        88888999876

>PRK15494 era GTPase Era; Provisional

Probab=99.21  E-value=1.2e-10  Score=110.07  Aligned_cols=64  Identities=33%  Similarity=0.530  Sum_probs=53.5

Q ss_pred             CcceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCCcEEEEeCCCCCCC
Q psy15351        166 VYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLP  234 (352)
Q Consensus       166 ~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~~~  234 (352)
                      .+..+|+++|.||||||||+|+|.+     .+.+.+++.|+||++........++.++.++||||+..+
T Consensus        50 ~k~~kV~ivG~~nvGKSTLin~l~~-----~k~~ivs~k~~tTr~~~~~~~~~~~~qi~~~DTpG~~~~  113 (339)
T PRK15494         50 QKTVSVCIIGRPNSGKSTLLNRIIG-----EKLSIVTPKVQTTRSIITGIITLKDTQVILYDTPGIFEP  113 (339)
T ss_pred             cceeEEEEEcCCCCCHHHHHHHHhC-----CceeeccCCCCCccCcEEEEEEeCCeEEEEEECCCcCCC
Confidence            3557999999999999999999997     566778899999998765555556668999999999765

>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1)

Probab=99.21  E-value=1.2e-10  Score=101.64  Aligned_cols=63  Identities=19%  Similarity=0.329  Sum_probs=48.6

Q ss_pred             eEEEEeCCCCCChHHHHHHHhCCCCCCCCceecC-CCCCceeEeeeeEEecCCCcEEEEeCCCCCCCCC
Q psy15351        169 TTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVG-PKAGVTRSVMSQVKISEKPLIYILDTPGISLPRI  236 (352)
Q Consensus       169 ~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~-~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~~~~~  236 (352)
                      ++|+++|.|||||||++|+|++.     +...++ ..+|+|+..+.......+.++.++||||+.+...
T Consensus         1 ~~i~lvG~~g~GKSsl~N~ilg~-----~~~~~~~~~~~~T~~~~~~~~~~~~~~i~viDTPG~~d~~~   64 (196)
T cd01852           1 LRLVLVGKTGAGKSATGNTILGR-----EVFESKLSASSVTKTCQKESAVWDGRRVNVIDTPGLFDTSV   64 (196)
T ss_pred             CEEEEECCCCCCHHHHHHHhhCC-----CccccccCCCCcccccceeeEEECCeEEEEEECcCCCCccC
Confidence            36999999999999999999983     333333 3678888877654445667899999999998643

This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).

>PRK00089 era GTPase Era; Reviewed

Probab=99.20  E-value=3.3e-11  Score=111.87  Aligned_cols=62  Identities=40%  Similarity=0.610  Sum_probs=52.7

Q ss_pred             eEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCCcEEEEeCCCCCCCC
Q psy15351        169 TTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPR  235 (352)
Q Consensus       169 ~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~~~~  235 (352)
                      -.|+++|.||||||||+|+|.+     .+.+.+++.|+||+.....+...++.++.++||||+..+.
T Consensus         6 g~V~iiG~pn~GKSTLin~L~g-----~~~~~vs~~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~   67 (292)
T PRK00089          6 GFVAIVGRPNVGKSTLLNALVG-----QKISIVSPKPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPK   67 (292)
T ss_pred             EEEEEECCCCCCHHHHHHHHhC-----CceeecCCCCCcccccEEEEEEcCCceEEEEECCCCCCch
Confidence            4699999999999999999998     5677899999999987766555555689999999998764

>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]

Probab=99.18  E-value=5.1e-11  Score=117.98  Aligned_cols=70  Identities=31%  Similarity=0.319  Sum_probs=60.2

Q ss_pred             ceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCCcEEEEeCCCCCCCCCCCHHHHH
Q psy15351        168 NTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLECGM  243 (352)
Q Consensus       168 ~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~~~~~~~~~~~~  243 (352)
                      ..+|+++|+||||||||+|+|+|      ....+|+.||+|.+.-++.....+..+.++|+||+.+....+.++..
T Consensus         3 ~~~valvGNPNvGKTtlFN~LTG------~~q~VgNwpGvTVEkkeg~~~~~~~~i~ivDLPG~YSL~~~S~DE~V   72 (653)
T COG0370           3 KLTVALVGNPNVGKTTLFNALTG------ANQKVGNWPGVTVEKKEGKLKYKGHEIEIVDLPGTYSLTAYSEDEKV   72 (653)
T ss_pred             cceEEEecCCCccHHHHHHHHhc------cCceecCCCCeeEEEEEEEEEecCceEEEEeCCCcCCCCCCCchHHH
Confidence            35699999999999999999996      67899999999999888777777778999999999998666655543

>cd01899 Ygr210 Ygr210 subfamily

Probab=99.18  E-value=6.5e-11  Score=110.51  Aligned_cols=87  Identities=23%  Similarity=0.263  Sum_probs=61.0

Q ss_pred             EEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEec------------------------CCCcEEEE
Q psy15351        171 VMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKIS------------------------EKPLIYIL  226 (352)
Q Consensus       171 v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~------------------------~~~~~~l~  226 (352)
                      |+++|.||||||||+|+|++      ..+.+++.|++|+++..+....                        ..-.+.++
T Consensus         1 i~ivG~pnvGKStLfn~lt~------~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~   74 (318)
T cd01899           1 IGLVGKPNAGKSTFFNAATL------ADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELI   74 (318)
T ss_pred             CEEECCCCCCHHHHHHHHhC------CCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEE
Confidence            58999999999999999996      3458899999998876532221                        11258999


Q ss_pred             eCCCCCCCCCCCHHHHHHHHHHhhhhhhccchhhhhHhHHhhhcCCC
Q psy15351        227 DTPGISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTG  273 (352)
Q Consensus       227 DtPGi~~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~il~~~~~~~  273 (352)
                      ||||+....  +...++...+...+++        +|.+++|++...
T Consensus        75 D~aGlv~ga--~~~~glg~~fL~~ir~--------aD~ii~Vvd~~~  111 (318)
T cd01899          75 DVAGLVPGA--HEGKGLGNKFLDDLRD--------ADALIHVVDASG  111 (318)
T ss_pred             ECCCCCCCc--cchhhHHHHHHHHHHH--------CCEEEEEEeCCC
Confidence            999998652  2222333333344444        888999998764

Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.

>PRK12296 obgE GTPase CgtA; Reviewed

Probab=99.17  E-value=3.5e-11  Score=117.75  Aligned_cols=61  Identities=26%  Similarity=0.266  Sum_probs=51.3

Q ss_pred             ceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCCcEEEEeCCCCCCC
Q psy15351        168 NTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLP  234 (352)
Q Consensus       168 ~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~~~  234 (352)
                      -..|+++|+||||||||+|+|++      ....+++.|+||+.+...+....+.+++++||||++..
T Consensus       159 ~adV~LVG~PNAGKSTLln~Ls~------akpkIadypfTTl~P~lGvv~~~~~~f~laDtPGlieg  219 (500)
T PRK12296        159 VADVGLVGFPSAGKSSLISALSA------AKPKIADYPFTTLVPNLGVVQAGDTRFTVADVPGLIPG  219 (500)
T ss_pred             cceEEEEEcCCCCHHHHHHHHhc------CCccccccCcccccceEEEEEECCeEEEEEECCCCccc
Confidence            46799999999999999999996      34567999999999876655555567999999999865

>PRK12299 obgE GTPase CgtA; Reviewed

Probab=99.17  E-value=4.3e-11  Score=112.67  Aligned_cols=60  Identities=27%  Similarity=0.287  Sum_probs=50.2

Q ss_pred             eEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEec-CCCcEEEEeCCCCCCC
Q psy15351        169 TTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKIS-EKPLIYILDTPGISLP  234 (352)
Q Consensus       169 ~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~-~~~~~~l~DtPGi~~~  234 (352)
                      ..|+++|+||||||||+|+|++      ..+.+++.|+||+.++..+... .+.++.++||||+...
T Consensus       159 adVglVG~PNaGKSTLln~ls~------a~~~va~ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~g  219 (335)
T PRK12299        159 ADVGLVGLPNAGKSTLISAVSA------AKPKIADYPFTTLHPNLGVVRVDDYKSFVIADIPGLIEG  219 (335)
T ss_pred             CCEEEEcCCCCCHHHHHHHHHc------CCCccCCCCCceeCceEEEEEeCCCcEEEEEeCCCccCC
Confidence            5699999999999999999995      3467899999999988655443 4457999999999865

>KOG1489|consensus

Probab=99.17  E-value=4.2e-11  Score=108.08  Aligned_cols=90  Identities=26%  Similarity=0.273  Sum_probs=66.0

Q ss_pred             eEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCC-cEEEEeCCCCCCCCCCCHHHHHHHHH
Q psy15351        169 TTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKP-LIYILDTPGISLPRIDNLECGMRLAA  247 (352)
Q Consensus       169 ~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~-~~~l~DtPGi~~~~~~~~~~~~~l~~  247 (352)
                      ..+++||+||+|||||+|+|.+      ..+.++++++||..+.-.....++. ++.+-|.|||+.....  ..++-..+
T Consensus       197 advGLVG~PNAGKSTLL~als~------AKpkVa~YaFTTL~P~iG~v~yddf~q~tVADiPGiI~GAh~--nkGlG~~F  268 (366)
T KOG1489|consen  197 ADVGLVGFPNAGKSTLLNALSR------AKPKVAHYAFTTLRPHIGTVNYDDFSQITVADIPGIIEGAHM--NKGLGYKF  268 (366)
T ss_pred             cccceecCCCCcHHHHHHHhhc------cCCcccccceeeeccccceeeccccceeEeccCccccccccc--cCcccHHH
Confidence            4689999999999999999995      5669999999999987654444443 5999999999987443  33343344


Q ss_pred             HhhhhhhccchhhhhHhHHhhhcCCCC
Q psy15351        248 CATLQDHLVGEINIADYILFYLNRTGN  274 (352)
Q Consensus       248 ~~~i~~~~~~~~~~~~~il~~~~~~~~  274 (352)
                      ...|.+        ++.+++|++....
T Consensus       269 LrHiER--------~~~l~fVvD~s~~  287 (366)
T KOG1489|consen  269 LRHIER--------CKGLLFVVDLSGK  287 (366)
T ss_pred             HHHHHh--------hceEEEEEECCCc
Confidence            444433        6667777776543

>KOG1491|consensus

Probab=99.16  E-value=5.1e-11  Score=108.42  Aligned_cols=109  Identities=19%  Similarity=0.200  Sum_probs=76.8

Q ss_pred             CcceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCC-----------------CcEEEEeC
Q psy15351        166 VYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEK-----------------PLIYILDT  228 (352)
Q Consensus       166 ~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~-----------------~~~~l~Dt  228 (352)
                      ...++++|||.|||||||++|+|+.      ..+..+++|++|.++........+                 -.+.++|.
T Consensus        18 ~~~lkiGIVGlPNvGKST~fnalT~------~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DI   91 (391)
T KOG1491|consen   18 GNNLKIGIVGLPNVGKSTFFNALTK------SKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDI   91 (391)
T ss_pred             CCcceeeEeeCCCCchHHHHHHHhc------CCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEee
Confidence            4568999999999999999999995      445599999999998653221111                 14899999


Q ss_pred             CCCCCCCCCCHHHHHHHHHHhhhhhhccchhhhhHhHHhhhcCCCCCcccccccCCCCCccH
Q psy15351        229 PGISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDI  290 (352)
Q Consensus       229 PGi~~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~l~~~~~~~  290 (352)
                      .|+....  +...++--++...|+.        +|.|+++++.....+.....+--+|..|+
T Consensus        92 AGLvkGA--s~G~GLGN~FLs~iR~--------vDaifhVVr~f~d~di~hve~~vDPvrDi  143 (391)
T KOG1491|consen   92 AGLVKGA--SAGEGLGNKFLSHIRH--------VDAIFHVVRAFEDTDIIHVEGGVDPVRDI  143 (391)
T ss_pred             cccccCc--ccCcCchHHHHHhhhh--------ccceeEEEEecCcccceeccCCCCchhhH
Confidence            9999873  3334555555555554        88999999887665544333333455554

>TIGR03156 GTP_HflX GTP-binding protein HflX

Probab=99.15  E-value=1e-10  Score=110.90  Aligned_cols=62  Identities=26%  Similarity=0.303  Sum_probs=50.2

Q ss_pred             CcceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeee-EEecCCCcEEEEeCCCCCC
Q psy15351        166 VYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQ-VKISEKPLIYILDTPGISL  233 (352)
Q Consensus       166 ~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~-~~~~~~~~~~l~DtPGi~~  233 (352)
                      ...++|+++|+||||||||+|+|++     . ...+.+.||+|+++... +.+.++..+.++||||+..
T Consensus       187 ~~~~~ValvG~~NvGKSSLln~L~~-----~-~~~v~~~~~tT~d~~~~~i~~~~~~~i~l~DT~G~~~  249 (351)
T TIGR03156       187 ADVPTVALVGYTNAGKSTLFNALTG-----A-DVYAADQLFATLDPTTRRLDLPDGGEVLLTDTVGFIR  249 (351)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhC-----C-ceeeccCCccccCCEEEEEEeCCCceEEEEecCcccc
Confidence            4558999999999999999999996     2 35678899999988753 3333456899999999954

This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).

>KOG1547|consensus

Probab=99.14  E-value=1.2e-10  Score=101.21  Aligned_cols=169  Identities=18%  Similarity=0.180  Sum_probs=88.4

Q ss_pred             CcceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecC--CCCCceeEeeeeEEecCCC---cEEEEeCCCCCCCCCCCH-
Q psy15351        166 VYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVG--PKAGVTRSVMSQVKISEKP---LIYILDTPGISLPRIDNL-  239 (352)
Q Consensus       166 ~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~--~~pg~T~~~~~~~~~~~~~---~~~l~DtPGi~~~~~~~~-  239 (352)
                      +-.++|++||.+|.||||++|+|...++........+  +.|.||.-......+..+.   ++.++||||+++.-..+. 
T Consensus        44 GF~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN~nc  123 (336)
T KOG1547|consen   44 GFDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINNDNC  123 (336)
T ss_pred             cCceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCccch
Confidence            4679999999999999999999997654332222222  3555544332222222222   578999999998522211 


Q ss_pred             -HHHHH---------HHHHhhhhhhccchhhhhHhHHhhhcCCCCCcccccccCCCCCccHHHHHHHHHHHhcccccccc
Q psy15351        240 -ECGMR---------LAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIKKKWFKRAFD  309 (352)
Q Consensus       240 -~~~~~---------l~~~~~i~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~a~~~g~~~~~~~  309 (352)
                       +-.++         |.-.-.+.+.-.-++.-++++++.+....+       .+....-++...|..++.-...+.|.+.
T Consensus       124 WePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGh-------sLrplDieflkrLt~vvNvvPVIakaDt  196 (336)
T KOG1547|consen  124 WEPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGH-------SLRPLDIEFLKRLTEVVNVVPVIAKADT  196 (336)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCC-------ccCcccHHHHHHHhhhheeeeeEeeccc
Confidence             00000         000000111001112224455555554432       1211112233334444444444555555


Q ss_pred             ccCCcccCCCCHHHHHHHHHHHHhCCCCcceecCcccc
Q psy15351        310 VSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDRDFL  347 (352)
Q Consensus       310 ~~~g~~~~~~d~~~a~~~~l~~~~~g~l~~~~~~~~~~  347 (352)
                      +|      ..+-....+.+-+++.++-+..|.++-.+.
T Consensus       197 lT------leEr~~FkqrI~~el~~~~i~vYPq~~fde  228 (336)
T KOG1547|consen  197 LT------LEERSAFKQRIRKELEKHGIDVYPQDSFDE  228 (336)
T ss_pred             cc------HHHHHHHHHHHHHHHHhcCccccccccccc
Confidence            55      234455667788899999998887765543

>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase)

Probab=99.13  E-value=1.6e-10  Score=106.28  Aligned_cols=66  Identities=26%  Similarity=0.325  Sum_probs=50.7

Q ss_pred             ccCcceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCCcEEEEeCCCCCCC
Q psy15351        164 TEVYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLP  234 (352)
Q Consensus       164 ~~~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~~~  234 (352)
                      .....++|+++|.+||||||++|+|++     +..+.++..+++|...+.......+..+.++||||+.+.
T Consensus        34 ~~~~~~rIllvGktGVGKSSliNsIlG-----~~v~~vs~f~s~t~~~~~~~~~~~G~~l~VIDTPGL~d~   99 (313)
T TIGR00991        34 EDVSSLTILVMGKGGVGKSSTVNSIIG-----ERIATVSAFQSEGLRPMMVSRTRAGFTLNIIDTPGLIEG   99 (313)
T ss_pred             ccccceEEEEECCCCCCHHHHHHHHhC-----CCcccccCCCCcceeEEEEEEEECCeEEEEEECCCCCch
Confidence            345678999999999999999999998     455566777776655443333345678999999999875

>PRK12297 obgE GTPase CgtA; Reviewed

Probab=99.12  E-value=1.3e-10  Score=112.22  Aligned_cols=60  Identities=23%  Similarity=0.272  Sum_probs=49.5

Q ss_pred             eEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecC-CCcEEEEeCCCCCCC
Q psy15351        169 TTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISE-KPLIYILDTPGISLP  234 (352)
Q Consensus       169 ~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~-~~~~~l~DtPGi~~~  234 (352)
                      ..|+++|.||||||||||+|++      ..+.+++.|+||+.+...+.... +.++.++||||+...
T Consensus       159 adVglVG~pNaGKSTLLn~Lt~------ak~kIa~ypfTTl~PnlG~v~~~~~~~~~laD~PGlieg  219 (424)
T PRK12297        159 ADVGLVGFPNVGKSTLLSVVSN------AKPKIANYHFTTLVPNLGVVETDDGRSFVMADIPGLIEG  219 (424)
T ss_pred             CcEEEEcCCCCCHHHHHHHHHc------CCCccccCCcceeceEEEEEEEeCCceEEEEECCCCccc
Confidence            4799999999999999999996      34678899999999876543333 567999999999864

>TIGR00092 GTP-binding protein YchF

Probab=99.11  E-value=9.1e-11  Score=110.52  Aligned_cols=106  Identities=22%  Similarity=0.194  Sum_probs=71.3

Q ss_pred             eEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCC-----------------cEEEEeCCCC
Q psy15351        169 TTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKP-----------------LIYILDTPGI  231 (352)
Q Consensus       169 ~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~-----------------~~~l~DtPGi  231 (352)
                      ++++++|.||||||||+|+|++     .....+++.|+||..+..++....+.                 .+.++|.||+
T Consensus         3 lk~GivGlPn~GKSTlfnaLT~-----~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGl   77 (368)
T TIGR00092         3 LSGGIVGLPNVGKSTLFAATTN-----LLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGL   77 (368)
T ss_pred             ceEEEECCCCCChHHHHHHHhC-----CCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEecccc
Confidence            7899999999999999999996     33327889999999987654444332                 5899999999


Q ss_pred             CCCCCCCHHHHHHHHHHhhhhhhccchhhhhHhHHhhhcCCCCCcccccccCCCCCcc
Q psy15351        232 SLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDD  289 (352)
Q Consensus       232 ~~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~l~~~~~~  289 (352)
                      .....  ...++-..+...++.        +|.+++|++...........+..+|.++
T Consensus        78 v~gAs--~g~Glgn~fL~~ir~--------~d~l~hVvr~f~d~~i~H~~~~~dp~~d  125 (368)
T TIGR00092        78 VGGAS--KGEGLGNQFLANIRE--------VDIIQHVVRCFEDDIIHHVGNVDDPRDD  125 (368)
T ss_pred             ccchh--cccCcchHHHHHHHh--------CCEEEEEEeCCCCcccCccCCCCCHHHH
Confidence            98632  222232233444444        7888888887654443333343344443

This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.

>TIGR02729 Obg_CgtA Obg family GTPase CgtA

Probab=99.10  E-value=1.6e-10  Score=108.77  Aligned_cols=61  Identities=26%  Similarity=0.274  Sum_probs=50.0

Q ss_pred             ceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCC-CcEEEEeCCCCCCC
Q psy15351        168 NTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEK-PLIYILDTPGISLP  234 (352)
Q Consensus       168 ~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~-~~~~l~DtPGi~~~  234 (352)
                      -..|+++|.||||||||+|+|++      ....+++.|+||+.+...+....+ .++.++||||+...
T Consensus       157 ~adV~lvG~pnaGKSTLl~~lt~------~~~~va~y~fTT~~p~ig~v~~~~~~~~~i~D~PGli~~  218 (329)
T TIGR02729       157 LADVGLVGLPNAGKSTLISAVSA------AKPKIADYPFTTLVPNLGVVRVDDGRSFVIADIPGLIEG  218 (329)
T ss_pred             cccEEEEcCCCCCHHHHHHHHhc------CCccccCCCCCccCCEEEEEEeCCceEEEEEeCCCcccC
Confidence            35799999999999999999995      345789999999988765444333 67999999999865

This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.

>COG1159 Era GTPase [General function prediction only]

Probab=99.10  E-value=8.4e-10  Score=99.57  Aligned_cols=100  Identities=19%  Similarity=0.278  Sum_probs=83.6

Q ss_pred             HHHHHHHhhccCEEEEEEcCCCCCCCcCHHHHHHHh-CCCCEEEEEEcccCCCccc-hHHHHHHHHhhcCCCCcEEEeec
Q psy15351          5 LKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQ-NIRPMVLVLNKRDLINSKH-ESLIEEKVRKEQSHISEVIFTNC   82 (352)
Q Consensus         5 ~~~~~~~i~~aD~vl~VvDar~p~~~~~~~l~~~l~-~~k~~ilVlNK~Dl~~~~~-~~~~~~~~~~~~~~~~~v~~iSa   82 (352)
                      .+.++..+..+|+|+||+|+..++...+..+.+.++ ...|+++++||+|.+.++. .....+++.. ..++.+++++||
T Consensus        76 ~~~a~~sl~dvDlilfvvd~~~~~~~~d~~il~~lk~~~~pvil~iNKID~~~~~~~l~~~~~~~~~-~~~f~~ivpiSA  154 (298)
T COG1159          76 NKAARSALKDVDLILFVVDADEGWGPGDEFILEQLKKTKTPVILVVNKIDKVKPKTVLLKLIAFLKK-LLPFKEIVPISA  154 (298)
T ss_pred             HHHHHHHhccCcEEEEEEeccccCCccHHHHHHHHhhcCCCeEEEEEccccCCcHHHHHHHHHHHHh-hCCcceEEEeec
Confidence            456889999999999999999999988888877776 3579999999999998876 4556666544 344568999999


Q ss_pred             CCCCCCCHHHHHHHHHHHhhhcccc
Q psy15351         83 RNPNCKGVQKILPTLQHISDNMTRY  107 (352)
Q Consensus        83 ~~~~~~gi~~L~~~i~~~~~~~~~~  107 (352)
                      +++  .|++.|++.+.+++++++.+
T Consensus       155 ~~g--~n~~~L~~~i~~~Lpeg~~~  177 (298)
T COG1159         155 LKG--DNVDTLLEIIKEYLPEGPWY  177 (298)
T ss_pred             ccc--CCHHHHHHHHHHhCCCCCCc
Confidence            999  99999999999999987743

>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE

Probab=99.05  E-value=3.6e-10  Score=110.32  Aligned_cols=64  Identities=38%  Similarity=0.402  Sum_probs=53.1

Q ss_pred             CcceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCCcEEEEeCCCCCCC
Q psy15351        166 VYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLP  234 (352)
Q Consensus       166 ~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~~~  234 (352)
                      ..+++|+++|.||||||||+|+|++     ...+.+++.||||++........++..+.++||||+...
T Consensus       201 ~~g~kVvIvG~~nvGKSSLiN~L~~-----~~~aivs~~pgtTrd~~~~~i~~~g~~v~l~DTaG~~~~  264 (442)
T TIGR00450       201 DDGFKLAIVGSPNVGKSSLLNALLK-----QDRAIVSDIKGTTRDVVEGDFELNGILIKLLDTAGIREH  264 (442)
T ss_pred             hcCCEEEEECCCCCcHHHHHHHHhC-----CCCcccCCCCCcEEEEEEEEEEECCEEEEEeeCCCcccc
Confidence            4678999999999999999999997     455678899999999875444445567899999999754

TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.

>KOG1490|consensus

Probab=99.05  E-value=2.6e-10  Score=108.44  Aligned_cols=94  Identities=24%  Similarity=0.236  Sum_probs=72.3

Q ss_pred             CCcchhhhhccccccccccCcceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCCcEEEE
Q psy15351        147 ILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYIL  226 (352)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~~l~  226 (352)
                      .+.+.++...++.++..-.+...++.++|+|||||||++|.++      .....+.+.|+||+....+..-..-..+.++
T Consensus       147 sl~yLeqVrqhl~rlPsIDp~trTlllcG~PNVGKSSf~~~vt------radvevqpYaFTTksL~vGH~dykYlrwQVi  220 (620)
T KOG1490|consen  147 SLEYLEQVRQHLSRLPAIDPNTRTLLVCGYPNVGKSSFNNKVT------RADDEVQPYAFTTKLLLVGHLDYKYLRWQVI  220 (620)
T ss_pred             hHHHHHHHHHHHhcCCCCCCCcCeEEEecCCCCCcHhhccccc------ccccccCCcccccchhhhhhhhhheeeeeec
Confidence            3445666777777887778889999999999999999999998      4667899999999987544443334468899


Q ss_pred             eCCCCCCCCCCCHHHHHHHH
Q psy15351        227 DTPGISLPRIDNLECGMRLA  246 (352)
Q Consensus       227 DtPGi~~~~~~~~~~~~~l~  246 (352)
                      |||||.+...++....++++
T Consensus       221 DTPGILD~plEdrN~IEmqs  240 (620)
T KOG1490|consen  221 DTPGILDRPEEDRNIIEMQI  240 (620)
T ss_pred             CCccccCcchhhhhHHHHHH
Confidence            99999998766554444433

>KOG1249|consensus

Probab=99.04  E-value=5.3e-10  Score=107.30  Aligned_cols=212  Identities=21%  Similarity=0.237  Sum_probs=134.1

Q ss_pred             HHhhccCEEEEEEcCCCCCCCcCHHHHHHHhCCCCEEEEEEcccCCCccchHHHHHHHHhh------------cCC----
Q psy15351         10 KHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHESLIEEKVRKE------------QSH----   73 (352)
Q Consensus        10 ~~i~~aD~vl~VvDar~p~~~~~~~l~~~l~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~------------~~~----   73 (352)
                      +..++--++..|+|..+...+..+.+...+ ..+..+++.||+|+.+.+..--..+.++..            +..    
T Consensus       106 ~~~~~~~~~~~vvd~~d~p~~i~p~~~~~v-~~~~~~v~~n~vdl~p~d~~~~~c~rc~~l~~~~~vk~~~~en~~p~~~  184 (572)
T KOG1249|consen  106 EKQENPALARKVVDLSDEPCSIDPLLTNDV-GSPRLFVDGNKVDLLPKDSRPGYCQRCHSLLHYGMIKAGGGENLNPDFD  184 (572)
T ss_pred             hhhhcccceEEeeecccCccccccchhhcc-cCCceEeeccccccccccccchHHHHHHhhcccceeecccccCCCcccc
Confidence            344444467777887776666777776665 345579999999999877522222222111            111    


Q ss_pred             CCcEEEeecCCCCCCCHHHHHHHHHHHhhhccccccccccceeEEEeccCCCCchhHHHHHhhhhcccCCC---------
Q psy15351         74 ISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIINALRSSHMKKGKA---------  144 (352)
Q Consensus        74 ~~~v~~iSa~~~~~~gi~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~nvgksslin~l~~~~~~~~~~---------  144 (352)
                      +..+..+|++++  .|+++|+-.+....          .++..++.+|..|+|||+++|.|..+..++.+.         
T Consensus       185 f~~~~~~r~ktg--yg~eeLI~~lvd~~----------df~Gdf~lvg~tnvgks~~fn~ll~sD~c~~~~p~lVd~aT~  252 (572)
T KOG1249|consen  185 FDHVDLIRAKTG--YGIEELIVMLVDIV----------DFRGDFYLVGATNVGKSTLFNALLESDLCSVNAPKLVDRATI  252 (572)
T ss_pred             hhhhhhhhhhhc--ccHHHHHHHhhhee----------eccCceeeeeecccchhhHHHHHhhhccccccccceeeeeec
Confidence            334567899998  99999987776433          257889999999999999999998887764210         


Q ss_pred             CCCCcchhhhh---------------------------ccc--ccc----ccccCcceEEEEeCCCCCChHHHHHHHhCC
Q psy15351        145 VPILPTLQHIS---------------------------DNM--TRY----HRTEVYNTTVMVVGVPNVGKSSIINALRSS  191 (352)
Q Consensus       145 ~~~~~~~~~~~---------------------------~~~--~~~----~~~~~~~~~v~i~G~pnvGKStliN~l~~~  191 (352)
                      .+-++..-.+.                           ++.  .+.    .........|+.+|.++.||+++||++...
T Consensus       253 ~dwpgTtlsllkfpv~~p~~~r~~~r~krl~~~~~~akk~~g~r~l~~~~~~~ag~~~~v~~vg~t~a~~e~~~~~~~~~  332 (572)
T KOG1249|consen  253 SDWPGTTLSLLKFPVLVPHPYRLGGRRKRLGVHSVSAKKDMGERDLLALETGDAGKAGPVAAVGRTFAGSEELINAMAKE  332 (572)
T ss_pred             ccCCccccchhhCccccccchhhccchhhhhhhhhhhHhhhhHHHHHHhhhhccccccchHHhhhhhhccchhhhhhhhh
Confidence            01111100000                           000  000    011234678899999999999999999832


Q ss_pred             CCCCCCceecCCCCCceeEeeeeEEecCCCcEEEEeCCCCCCCC
Q psy15351        192 HMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPR  235 (352)
Q Consensus       192 ~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~~~~  235 (352)
                      .-.......-++.||||-.......+.. ..-+++||||+..+.
T Consensus       333 ~~a~~~~~~e~~vPgtTLg~~ri~~i~~-~~~w~YDTPG~~~~~  375 (572)
T KOG1249|consen  333 LHADVEALAEEPVPGTTLGIRRIEGIFK-RGAWLYDTPGVLNPN  375 (572)
T ss_pred             hccchhccccCCCCcccccceeeecccc-ccceeecCCCccChh
Confidence            1112334567889999988754332222 235899999999863

>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed

Probab=99.03  E-value=4.4e-10  Score=110.21  Aligned_cols=64  Identities=34%  Similarity=0.424  Sum_probs=52.3

Q ss_pred             CcceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCCcEEEEeCCCCCCC
Q psy15351        166 VYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLP  234 (352)
Q Consensus       166 ~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~~~  234 (352)
                      ..+++|+++|.||||||||+|+|++     ...+.+++.||+|++........++..+.++||||+..+
T Consensus       213 ~~~~kV~ivG~~nvGKSSLln~L~~-----~~~a~v~~~~gtT~d~~~~~i~~~g~~i~l~DT~G~~~~  276 (449)
T PRK05291        213 REGLKVVIAGRPNVGKSSLLNALLG-----EERAIVTDIAGTTRDVIEEHINLDGIPLRLIDTAGIRET  276 (449)
T ss_pred             hcCCEEEEECCCCCCHHHHHHHHhC-----CCCcccCCCCCcccccEEEEEEECCeEEEEEeCCCCCCC
Confidence            3568999999999999999999997     455678899999998765444445567999999999753

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.01  E-value=7.4e-10  Score=109.57  Aligned_cols=62  Identities=32%  Similarity=0.348  Sum_probs=51.2

Q ss_pred             cceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCCcEEEEeCCCCCC
Q psy15351        167 YNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISL  233 (352)
Q Consensus       167 ~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~~  233 (352)
                      ...+|+++|.||||||||+|+|++     ...+.+++.||+|++.........+..+.++||||+..
T Consensus        37 ~~~~V~IvG~~nvGKSSL~nrl~~-----~~~~~v~~~~gvT~d~~~~~~~~~~~~~~l~DT~G~~~   98 (472)
T PRK03003         37 PLPVVAVVGRPNVGKSTLVNRILG-----RREAVVEDVPGVTRDRVSYDAEWNGRRFTVVDTGGWEP   98 (472)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhC-----cCcccccCCCCCCEeeEEEEEEECCcEEEEEeCCCcCC
Confidence            346899999999999999999997     44567889999999987654444566799999999863

>cd01898 Obg Obg subfamily

Probab=99.01  E-value=3.6e-10  Score=95.76  Aligned_cols=58  Identities=24%  Similarity=0.300  Sum_probs=45.3

Q ss_pred             EEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCC-cEEEEeCCCCCC
Q psy15351        170 TVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKP-LIYILDTPGISL  233 (352)
Q Consensus       170 ~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~-~~~l~DtPGi~~  233 (352)
                      .|+++|.||||||||+|+|.+      ....++..|++|+.+........+. .+.++||||+..
T Consensus         2 ~v~ivG~~~~GKStl~~~l~~------~~~~v~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~   60 (170)
T cd01898           2 DVGLVGLPNAGKSTLLSAISN------AKPKIADYPFTTLVPNLGVVRVDDGRSFVVADIPGLIE   60 (170)
T ss_pred             CeEEECCCCCCHHHHHHHHhc------CCccccCCCccccCCcceEEEcCCCCeEEEEecCcccC
Confidence            489999999999999999986      2336788899988765444333444 789999999864

The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.

>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways

Probab=99.00  E-value=2.9e-09  Score=87.05  Aligned_cols=87  Identities=14%  Similarity=0.210  Sum_probs=74.1

Q ss_pred             HHHHHHhhccCEEEEEEcCCCCCCCcCHHHHHHHhCCCCEEEEEEcccCC-CccchHHHHHHHHhhcCCCCcEEEeecCC
Q psy15351          6 KDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLI-NSKHESLIEEKVRKEQSHISEVIFTNCRN   84 (352)
Q Consensus         6 ~~~~~~i~~aD~vl~VvDar~p~~~~~~~l~~~l~~~k~~ilVlNK~Dl~-~~~~~~~~~~~~~~~~~~~~~v~~iSa~~   84 (352)
                      +.+.....+||+|++|.|+..+.....|.+...+  .+|+|-|+||+|+. +.+..+...++++..|..  +++.+|+.+
T Consensus        55 ~aLi~ta~dad~V~ll~dat~~~~~~pP~fa~~f--~~pvIGVITK~Dl~~~~~~i~~a~~~L~~aG~~--~if~vS~~~  130 (143)
T PF10662_consen   55 HALIVTAQDADVVLLLQDATEPRSVFPPGFASMF--NKPVIGVITKIDLPSDDANIERAKKWLKNAGVK--EIFEVSAVT  130 (143)
T ss_pred             HHHHHHHhhCCEEEEEecCCCCCccCCchhhccc--CCCEEEEEECccCccchhhHHHHHHHHHHcCCC--CeEEEECCC
Confidence            4455677899999999999999988889887765  69999999999999 444566677788888877  799999999


Q ss_pred             CCCCCHHHHHHHHH
Q psy15351         85 PNCKGVQKILPTLQ   98 (352)
Q Consensus        85 ~~~~gi~~L~~~i~   98 (352)
                      +  +|+++|+++|.
T Consensus       131 ~--eGi~eL~~~L~  142 (143)
T PF10662_consen  131 G--EGIEELKDYLE  142 (143)
T ss_pred             C--cCHHHHHHHHh
Confidence            9  99999999875

Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process

>COG1163 DRG Predicted GTPase [General function prediction only]

Probab=98.98  E-value=8e-10  Score=100.34  Aligned_cols=64  Identities=30%  Similarity=0.344  Sum_probs=57.5

Q ss_pred             CcceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCCcEEEEeCCCCCCCC
Q psy15351        166 VYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPR  235 (352)
Q Consensus       166 ~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~~~~  235 (352)
                      ....+|+++|+|+||||||+|.|++      ..+.+++.|+||..++.++....+-+++++|+||++...
T Consensus        61 sGda~v~lVGfPsvGKStLL~~LTn------t~seva~y~FTTl~~VPG~l~Y~ga~IQild~Pgii~ga  124 (365)
T COG1163          61 SGDATVALVGFPSVGKSTLLNKLTN------TKSEVADYPFTTLEPVPGMLEYKGAQIQLLDLPGIIEGA  124 (365)
T ss_pred             cCCeEEEEEcCCCccHHHHHHHHhC------CCccccccCceecccccceEeecCceEEEEcCcccccCc
Confidence            3567999999999999999999995      667899999999999888888888899999999999853

>PRK11058 GTPase HflX; Provisional

Probab=98.97  E-value=7.7e-10  Score=107.46  Aligned_cols=60  Identities=23%  Similarity=0.280  Sum_probs=47.5

Q ss_pred             ceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeee-EEecCCCcEEEEeCCCCCC
Q psy15351        168 NTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQ-VKISEKPLIYILDTPGISL  233 (352)
Q Consensus       168 ~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~-~~~~~~~~~~l~DtPGi~~  233 (352)
                      .++|+++|+||||||||+|+|++     .. ..+++.||+|+++... +.+.+...+.++||||+..
T Consensus       197 ~p~ValVG~~NaGKSSLlN~Lt~-----~~-~~v~~~~~tTld~~~~~i~l~~~~~~~l~DTaG~~r  257 (426)
T PRK11058        197 VPTVSLVGYTNAGKSTLFNRITE-----AR-VYAADQLFATLDPTLRRIDVADVGETVLADTVGFIR  257 (426)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhC-----Cc-eeeccCCCCCcCCceEEEEeCCCCeEEEEecCcccc
Confidence            36899999999999999999996     33 3478899999988753 3333334789999999954

>COG3596 Predicted GTPase [General function prediction only]

Probab=98.96  E-value=5.2e-09  Score=93.28  Aligned_cols=71  Identities=27%  Similarity=0.284  Sum_probs=52.9

Q ss_pred             cCcceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCCcEEEEeCCCCCCCCCCCHH
Q psy15351        165 EVYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE  240 (352)
Q Consensus       165 ~~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~~~~~~~~~  240 (352)
                      ..+++++.++|.+|+|||||||+|+.     +....++..+-+|..........++..++|+||||+.+....|.+
T Consensus        36 ~~~pvnvLi~G~TG~GKSSliNALF~-----~~~~~v~~vg~~t~~~~~~~~~~~~~~l~lwDtPG~gdg~~~D~~  106 (296)
T COG3596          36 EKEPVNVLLMGATGAGKSSLINALFQ-----GEVKEVSKVGVGTDITTRLRLSYDGENLVLWDTPGLGDGKDKDAE  106 (296)
T ss_pred             ccCceeEEEecCCCCcHHHHHHHHHh-----ccCceeeecccCCCchhhHHhhccccceEEecCCCcccchhhhHH
Confidence            45789999999999999999999996     455566666655554433333344568999999999997665543

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=98.95  E-value=1.7e-09  Score=112.06  Aligned_cols=62  Identities=31%  Similarity=0.353  Sum_probs=51.7

Q ss_pred             cceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCCcEEEEeCCCCCC
Q psy15351        167 YNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISL  233 (352)
Q Consensus       167 ~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~~  233 (352)
                      ...+|+++|.||||||||+|+|++     .+.+.+++.||+|++.........+..+.++||||+..
T Consensus       274 ~~~~V~IvG~~nvGKSSL~n~l~~-----~~~~iv~~~pGvT~d~~~~~~~~~~~~~~liDT~G~~~  335 (712)
T PRK09518        274 AVGVVAIVGRPNVGKSTLVNRILG-----RREAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEA  335 (712)
T ss_pred             cCcEEEEECCCCCCHHHHHHHHhC-----CCceeecCCCCeeEEEEEEEEEECCEEEEEEeCCCcCC
Confidence            346899999999999999999997     45678899999999987644444556799999999874

>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria

Probab=98.94  E-value=2.5e-09  Score=94.57  Aligned_cols=63  Identities=21%  Similarity=0.296  Sum_probs=41.9

Q ss_pred             eEEEEeCCCCCChHHHHHHHhCCCCCCCCceecC-CCCCceeEeeeeEEecCCCcEEEEeCCCCCCCCC
Q psy15351        169 TTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVG-PKAGVTRSVMSQVKISEKPLIYILDTPGISLPRI  236 (352)
Q Consensus       169 ~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~-~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~~~~~  236 (352)
                      ++|+++|.+|+||||++|+|++.     ....++ ...++|...+.......+..+.++||||+.+...
T Consensus         1 l~IlllG~tGsGKSs~~N~ilg~-----~~f~~~~~~~~~t~~~~~~~~~~~g~~v~VIDTPGl~d~~~   64 (212)
T PF04548_consen    1 LRILLLGKTGSGKSSLGNSILGK-----EVFKSGSSAKSVTQECQKYSGEVDGRQVTVIDTPGLFDSDG   64 (212)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTS-----S-SS--TTTSS--SS-EEEEEEETTEEEEEEE--SSEETTE
T ss_pred             CEEEEECCCCCCHHHHHHHHhcc-----cceeeccccCCcccccceeeeeecceEEEEEeCCCCCCCcc
Confidence            47999999999999999999983     333333 2344565555544456677899999999987654

The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....

>TIGR00436 era GTP-binding protein Era

Probab=98.94  E-value=7.6e-09  Score=94.98  Aligned_cols=97  Identities=15%  Similarity=0.113  Sum_probs=71.3

Q ss_pred             HHHHHHHhhccCEEEEEEcCCCCCCCcCHHHHHHHh-CCCCEEEEEEcccCCCccchHHHHHHHHhhcCCCCcEEEeecC
Q psy15351          5 LKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQ-NIRPMVLVLNKRDLINSKHESLIEEKVRKEQSHISEVIFTNCR   83 (352)
Q Consensus         5 ~~~~~~~i~~aD~vl~VvDar~p~~~~~~~l~~~l~-~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~v~~iSa~   83 (352)
                      .+.++..+..+|++++|+|++.+.... ..+...++ .++|+++|+||+|+.++.......+.+.+. ..+.+++++||+
T Consensus        70 ~~~~~~~l~~aDvvl~VvD~~~~~~~~-~~i~~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~-~~~~~v~~iSA~  147 (270)
T TIGR00436        70 MKEARSAIGGVDLILFVVDSDQWNGDG-EFVLTKLQNLKRPVVLTRNKLDNKFKDKLLPLIDKYAIL-EDFKDIVPISAL  147 (270)
T ss_pred             HHHHHHHHhhCCEEEEEEECCCCCchH-HHHHHHHHhcCCCEEEEEECeeCCCHHHHHHHHHHHHhh-cCCCceEEEecC
Confidence            345678899999999999999765432 44444444 678999999999998655433333333222 122369999999


Q ss_pred             CCCCCCHHHHHHHHHHHhhhcc
Q psy15351         84 NPNCKGVQKILPTLQHISDNMT  105 (352)
Q Consensus        84 ~~~~~gi~~L~~~i~~~~~~~~  105 (352)
                      ++  .|+++|++++.+.+++++
T Consensus       148 ~g--~gi~~L~~~l~~~l~~~~  167 (270)
T TIGR00436       148 TG--DNTSFLAAFIEVHLPEGP  167 (270)
T ss_pred             CC--CCHHHHHHHHHHhCCCCC
Confidence            99  999999999999988765

Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.

>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site

Probab=98.93  E-value=4.8e-09  Score=90.94  Aligned_cols=98  Identities=24%  Similarity=0.307  Sum_probs=71.5

Q ss_pred             hHHHHHHHHhhccCEEEEEEcCCCCCCCcCHHHHHHHh-CCCCEEEEEEcccCCCccc---hHHHHHHH-HhhcCC---C
Q psy15351          3 RGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQ-NIRPMVLVLNKRDLINSKH---ESLIEEKV-RKEQSH---I   74 (352)
Q Consensus         3 ~~~~~~~~~i~~aD~vl~VvDar~p~~~~~~~l~~~l~-~~k~~ilVlNK~Dl~~~~~---~~~~~~~~-~~~~~~---~   74 (352)
                      +..+++...+..+|++|+|+|++.++.....+....+. .+.|+++|+||+|+...+.   .+++.+.+ +..+..   .
T Consensus        82 ~f~~~~~~~~~~~D~ailvVda~~g~~~~~~~~l~~~~~~~~p~ivvlNK~D~~~~~~~~~~~~~~~~l~~~~~~~~~~~  161 (188)
T PF00009_consen   82 DFIKEMIRGLRQADIAILVVDANDGIQPQTEEHLKILRELGIPIIVVLNKMDLIEKELEEIIEEIKEKLLKEYGENGEEI  161 (188)
T ss_dssp             HHHHHHHHHHTTSSEEEEEEETTTBSTHHHHHHHHHHHHTT-SEEEEEETCTSSHHHHHHHHHHHHHHHHHHTTSTTTST
T ss_pred             ceeecccceecccccceeeeecccccccccccccccccccccceEEeeeeccchhhhHHHHHHHHHHHhccccccCcccc
Confidence            46778888999999999999999887665555555554 7889999999999993321   23333222 222222   2


Q ss_pred             CcEEEeecCCCCCCCHHHHHHHHHHHhh
Q psy15351         75 SEVIFTNCRNPNCKGVQKILPTLQHISD  102 (352)
Q Consensus        75 ~~v~~iSa~~~~~~gi~~L~~~i~~~~~  102 (352)
                      .+++++||.++  .|+.+|++.+.+++|
T Consensus       162 ~~vi~~Sa~~g--~gi~~Ll~~l~~~~P  187 (188)
T PF00009_consen  162 VPVIPISALTG--DGIDELLEALVELLP  187 (188)
T ss_dssp             EEEEEEBTTTT--BTHHHHHHHHHHHS-
T ss_pred             ceEEEEecCCC--CCHHHHHHHHHHhCc
Confidence            36999999999  999999999998876

The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....

>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins

Probab=98.92  E-value=1.9e-09  Score=96.72  Aligned_cols=59  Identities=31%  Similarity=0.385  Sum_probs=48.3

Q ss_pred             EEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCCcEEEEeCCCCCCC
Q psy15351        170 TVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLP  234 (352)
Q Consensus       170 ~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~~~  234 (352)
                      +|+++|.||+|||||+|+|++      ....+++.|++|.++..+.....+..+.++||||+...
T Consensus         2 ~v~lvG~~~~GKStLl~~Ltg------~~~~v~~~~~tT~~~~~g~~~~~~~~i~l~DtpG~~~~   60 (233)
T cd01896           2 RVALVGFPSVGKSTLLSKLTN------TKSEVAAYEFTTLTCVPGVLEYKGAKIQLLDLPGIIEG   60 (233)
T ss_pred             EEEEECCCCCCHHHHHHHHHC------CCccccCCCCccccceEEEEEECCeEEEEEECCCcccc
Confidence            589999999999999999996      33567889999988765544455667999999998764

GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.

>PRK04213 GTP-binding protein; Provisional

Probab=98.92  E-value=5.7e-09  Score=91.28  Aligned_cols=57  Identities=33%  Similarity=0.532  Sum_probs=45.2

Q ss_pred             cceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCCcEEEEeCCCCCC
Q psy15351        167 YNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISL  233 (352)
Q Consensus       167 ~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~~  233 (352)
                      ..++|+++|.+|||||||+|+|.+      ....++..||+|+.... +...   .+.++||||+..
T Consensus         8 ~~~~i~i~G~~~~GKSsLin~l~~------~~~~~~~~~~~t~~~~~-~~~~---~~~l~Dt~G~~~   64 (201)
T PRK04213          8 RKPEIVFVGRSNVGKSTLVRELTG------KKVRVGKRPGVTRKPNH-YDWG---DFILTDLPGFGF   64 (201)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhC------CCCccCCCCceeeCceE-Eeec---ceEEEeCCcccc
Confidence            457899999999999999999986      23567788999987643 2221   589999999854

>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans

Probab=98.91  E-value=2.5e-09  Score=90.42  Aligned_cols=58  Identities=33%  Similarity=0.417  Sum_probs=44.0

Q ss_pred             EEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCCcEEEEeCCCCCC
Q psy15351        170 TVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISL  233 (352)
Q Consensus       170 ~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~~  233 (352)
                      +|+++|.||||||||+|+|.+.      ...+++.|++|+..........+..+.++||||+..
T Consensus         2 ~i~~~G~~~~GKssli~~l~~~------~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~   59 (168)
T cd01897           2 TLVIAGYPNVGKSSLVNKLTRA------KPEVAPYPFTTKSLFVGHFDYKYLRWQVIDTPGLLD   59 (168)
T ss_pred             eEEEEcCCCCCHHHHHHHHhcC------CCccCCCCCcccceeEEEEccCceEEEEEECCCcCC
Confidence            6899999999999999999962      234566788888765433222345799999999864

NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.

>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains

Probab=98.91  E-value=1.6e-08  Score=100.62  Aligned_cols=64  Identities=23%  Similarity=0.365  Sum_probs=48.5

Q ss_pred             cceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCC-CCceeEeeeeEEecCCCcEEEEeCCCCCCCCC
Q psy15351        167 YNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPK-AGVTRSVMSQVKISEKPLIYILDTPGISLPRI  236 (352)
Q Consensus       167 ~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~-pg~T~~~~~~~~~~~~~~~~l~DtPGi~~~~~  236 (352)
                      ..++|+++|.|||||||++|+|++     +....++.. ++||+. +.......+..+.++||||+.+...
T Consensus       117 fslrIvLVGKTGVGKSSLINSILG-----ekvf~vss~~~~TTr~-~ei~~~idG~~L~VIDTPGL~dt~~  181 (763)
T TIGR00993       117 FSLNILVLGKSGVGKSATINSIFG-----EVKFSTDAFGMGTTSV-QEIEGLVQGVKIRVIDTPGLKSSAS  181 (763)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhc-----cccccccCCCCCceEE-EEEEEEECCceEEEEECCCCCcccc
Confidence            457899999999999999999997     444555554 666664 4433444567899999999998643

The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.

>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes

Probab=98.90  E-value=3.8e-09  Score=87.82  Aligned_cols=62  Identities=37%  Similarity=0.482  Sum_probs=49.4

Q ss_pred             ceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCCcEEEEeCCCCCCC
Q psy15351        168 NTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLP  234 (352)
Q Consensus       168 ~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~~~  234 (352)
                      +++|+++|.+|+|||||+|++.+     ...+.+++.|++|.+.........+..+.++||||+...
T Consensus         1 ~~~i~l~G~~~~GKstli~~l~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~   62 (157)
T cd04164           1 GIKVVIVGKPNVGKSSLLNALAG-----RDRAIVSDIAGTTRDVIEESIDIGGIPVRLIDTAGIRET   62 (157)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHC-----CceEeccCCCCCccceEEEEEEeCCEEEEEEECCCcCCC
Confidence            36799999999999999999997     455667889999988764333334557899999999765

It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.

>COG0486 ThdF Predicted GTPase [General function prediction only]

Probab=98.89  E-value=6.9e-09  Score=98.99  Aligned_cols=93  Identities=19%  Similarity=0.380  Sum_probs=75.1

Q ss_pred             hHHHHHHHHhhccCEEEEEEcCCCCCCCcCHHHHHHHhCCCCEEEEEEcccCCCccchHHHHHHHHhhcCCCCcEEEeec
Q psy15351          3 RGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHESLIEEKVRKEQSHISEVIFTNC   82 (352)
Q Consensus         3 ~~~~~~~~~i~~aD~vl~VvDar~p~~~~~~~l~~~l~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~v~~iSa   82 (352)
                      -|++++++.+++||+||+|+|++.|+...+..+.+.+..++|+++|+||+||.++......  .+ ..+.   +++.+||
T Consensus       285 iGIeRs~~~i~~ADlvL~v~D~~~~~~~~d~~~~~~~~~~~~~i~v~NK~DL~~~~~~~~~--~~-~~~~---~~i~iSa  358 (454)
T COG0486         285 IGIERAKKAIEEADLVLFVLDASQPLDKEDLALIELLPKKKPIIVVLNKADLVSKIELESE--KL-ANGD---AIISISA  358 (454)
T ss_pred             HHHHHHHHHHHhCCEEEEEEeCCCCCchhhHHHHHhcccCCCEEEEEechhcccccccchh--hc-cCCC---ceEEEEe
Confidence            5899999999999999999999998888787777744468999999999999987642222  11 1122   3899999


Q ss_pred             CCCCCCCHHHHHHHHHHHhhh
Q psy15351         83 RNPNCKGVQKILPTLQHISDN  103 (352)
Q Consensus        83 ~~~~~~gi~~L~~~i~~~~~~  103 (352)
                      +++  +|++.|.+.|.+.+..
T Consensus       359 ~t~--~Gl~~L~~~i~~~~~~  377 (454)
T COG0486         359 KTG--EGLDALREAIKQLFGK  377 (454)
T ss_pred             cCc--cCHHHHHHHHHHHHhh
Confidence            999  9999999999987764

>cd01894 EngA1 EngA1 subfamily

Probab=98.88  E-value=2.2e-08  Score=83.29  Aligned_cols=88  Identities=20%  Similarity=0.340  Sum_probs=67.9

Q ss_pred             HHHHHHhhccCEEEEEEcCCCCCCCcCHHHHHHHh-CCCCEEEEEEcccCCCccchHHHHHHHHhhcCCCCcEEEeecCC
Q psy15351          6 KDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQ-NIRPMVLVLNKRDLINSKHESLIEEKVRKEQSHISEVIFTNCRN   84 (352)
Q Consensus         6 ~~~~~~i~~aD~vl~VvDar~p~~~~~~~l~~~l~-~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~v~~iSa~~   84 (352)
                      +++...+..+|++++|+|++.+....+..+.++++ .+.|+++|+||+|+.+....   .+.+.+.+..  +++.+|+++
T Consensus        68 ~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~---~~~~~~~~~~--~~~~~Sa~~  142 (157)
T cd01894          68 EQAELAIEEADVILFVVDGREGLTPADEEIAKYLRKSKKPVILVVNKVDNIKEEDE---AAEFYSLGFG--EPIPISAEH  142 (157)
T ss_pred             HHHHHHHHhCCEEEEEEeccccCCccHHHHHHHHHhcCCCEEEEEECcccCChHHH---HHHHHhcCCC--CeEEEeccc
Confidence            34566789999999999999887777766666665 57999999999999876533   2233334442  589999999


Q ss_pred             CCCCCHHHHHHHHHHH
Q psy15351         85 PNCKGVQKILPTLQHI  100 (352)
Q Consensus        85 ~~~~gi~~L~~~i~~~  100 (352)
                      +  .|++++++++.+.
T Consensus       143 ~--~gv~~l~~~l~~~  156 (157)
T cd01894         143 G--RGIGDLLDAILEL  156 (157)
T ss_pred             C--CCHHHHHHHHHhh
Confidence            9  9999999988653

This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>cd01894 EngA1 EngA1 subfamily

Probab=98.87  E-value=3.2e-09  Score=88.35  Aligned_cols=58  Identities=33%  Similarity=0.414  Sum_probs=45.1

Q ss_pred             EEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCCcEEEEeCCCCCCC
Q psy15351        172 MVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLP  234 (352)
Q Consensus       172 ~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~~~  234 (352)
                      +++|.+|||||||+|+|.+     .....++..|++|++.........+..+.++||||+...
T Consensus         1 ~l~G~~~~GKssl~~~l~~-----~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~DtpG~~~~   58 (157)
T cd01894           1 AIVGRPNVGKSTLFNRLTG-----RRDAIVEDTPGVTRDRIYGEAEWGGREFILIDTGGIEPD   58 (157)
T ss_pred             CccCCCCCCHHHHHHHHhC-----CcEEeecCCCCceeCceeEEEEECCeEEEEEECCCCCCc
Confidence            4789999999999999996     344567788999987654333334557899999999864

This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]

Probab=98.86  E-value=7.7e-09  Score=95.72  Aligned_cols=168  Identities=17%  Similarity=0.141  Sum_probs=89.9

Q ss_pred             CcceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCC-----CCCceeEeeeeEEecCCC---cEEEEeCCCCCCCCCC
Q psy15351        166 VYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGP-----KAGVTRSVMSQVKISEKP---LIYILDTPGISLPRID  237 (352)
Q Consensus       166 ~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~-----~pg~T~~~~~~~~~~~~~---~~~l~DtPGi~~~~~~  237 (352)
                      +-.++|+++|..|.||||+||+|++.++.... .....     .|++..... ...+..+.   ++.++||||+++.-..
T Consensus        21 Gi~f~im~~G~sG~GKttfiNtL~~~~l~~~~-~~~~~~~~~~~~~~~i~~~-~~~l~e~~~~~~l~vIDtpGfGD~idN   98 (373)
T COG5019          21 GIDFTIMVVGESGLGKTTFINTLFGTSLVDET-EIDDIRAEGTSPTLEIKIT-KAELEEDGFHLNLTVIDTPGFGDFIDN   98 (373)
T ss_pred             CCceEEEEecCCCCchhHHHHhhhHhhccCCC-CccCcccccCCcceEEEee-eeeeecCCeEEEEEEeccCCccccccc
Confidence            56799999999999999999999986443221 11111     122222221 22222222   5889999999986322


Q ss_pred             CH--HHH-------H--HHHHHhhhhhhccchhhhhHhHHhhhcCCCCCcccccccCCCCCccHHHHHHHHHHHhccccc
Q psy15351        238 NL--ECG-------M--RLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIKKKWFKR  306 (352)
Q Consensus       238 ~~--~~~-------~--~l~~~~~i~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~a~~~g~~~~  306 (352)
                      +.  +..       .  .+.--..+.++..-.+.-++++|+.+.....       ++.+..-....-|...+.-..-+.|
T Consensus        99 s~~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh-------~l~~~DIe~Mk~ls~~vNlIPVI~K  171 (373)
T COG5019          99 SKCWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGH-------GLKPLDIEAMKRLSKRVNLIPVIAK  171 (373)
T ss_pred             cccHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCC-------CCCHHHHHHHHHHhcccCeeeeeec
Confidence            11  000       0  0111111222211112234555555554432       3332221223333344443444566


Q ss_pred             cccccCCcccCCCCHHHHHHHHHHHHhCCCCccee-cCccccc
Q psy15351        307 AFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVM-LDRDFLE  348 (352)
Q Consensus       307 ~~~~~~g~~~~~~d~~~a~~~~l~~~~~g~l~~~~-~~~~~~~  348 (352)
                      .+.+|      ..++....+.+.+++....+..|. +|++..+
T Consensus       172 aD~lT------~~El~~~K~~I~~~i~~~nI~vf~pyd~e~~~  208 (373)
T COG5019         172 ADTLT------DDELAEFKERIREDLEQYNIPVFDPYDPEDDE  208 (373)
T ss_pred             cccCC------HHHHHHHHHHHHHHHHHhCCceeCCCCccccc
Confidence            66666      236788889999999999999985 6666553

>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily

Probab=98.86  E-value=2.8e-09  Score=89.02  Aligned_cols=57  Identities=35%  Similarity=0.374  Sum_probs=44.4

Q ss_pred             EeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCCcEEEEeCCCCCCCC
Q psy15351        173 VVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPR  235 (352)
Q Consensus       173 i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~~~~  235 (352)
                      ++|.+|||||||+|++++      ....++..||+|++.........+..+.++||||+....
T Consensus         1 l~G~~~~GKssl~~~~~~------~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~   57 (158)
T cd01879           1 LVGNPNVGKTTLFNALTG------ARQKVGNWPGVTVEKKEGRFKLGGKEIEIVDLPGTYSLS   57 (158)
T ss_pred             CCCCCCCCHHHHHHHHhc------CcccccCCCCcccccceEEEeeCCeEEEEEECCCccccC
Confidence            579999999999999986      235778889999987653333344579999999997643

E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.

>COG2262 HflX GTPases [General function prediction only]

Probab=98.85  E-value=3.8e-09  Score=99.03  Aligned_cols=67  Identities=25%  Similarity=0.308  Sum_probs=55.0

Q ss_pred             ccccCcceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeee-eEEecCCCcEEEEeCCCCCCC
Q psy15351        162 HRTEVYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMS-QVKISEKPLIYILDTPGISLP  234 (352)
Q Consensus       162 ~~~~~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~-~~~~~~~~~~~l~DtPGi~~~  234 (352)
                      .+....-+.|+++||+|+|||||+|+|++      ....+.+..+.|-++.. ...+.++..+.|.||-||+..
T Consensus       186 ~R~~~~~p~vaLvGYTNAGKSTL~N~LT~------~~~~~~d~LFATLdpttR~~~l~~g~~vlLtDTVGFI~~  253 (411)
T COG2262         186 KRSRSGIPLVALVGYTNAGKSTLFNALTG------ADVYVADQLFATLDPTTRRIELGDGRKVLLTDTVGFIRD  253 (411)
T ss_pred             hhcccCCCeEEEEeeccccHHHHHHHHhc------cCeeccccccccccCceeEEEeCCCceEEEecCccCccc
Confidence            34445678999999999999999999995      56677888998888765 345555678999999999975

>PRK15467 ethanolamine utilization protein EutP; Provisional

Probab=98.84  E-value=3.8e-08  Score=82.89  Aligned_cols=95  Identities=17%  Similarity=0.229  Sum_probs=69.6

Q ss_pred             HHHHHHHHhhccCEEEEEEcCCCCCCCcCHHHHHHHhCCCCEEEEEEcccCCCccchHHHHHHHHhhcCCCCcEEEeecC
Q psy15351          4 GLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHESLIEEKVRKEQSHISEVIFTNCR   83 (352)
Q Consensus         4 ~~~~~~~~i~~aD~vl~VvDar~p~~~~~~~l~~~l~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~v~~iSa~   83 (352)
                      ..+.+...+..+|++++|+|+..+.+.....+..+. .++|+++++||+|+.+. ....+.+++.+.+.. .+++++||+
T Consensus        54 ~~~~~~~~~~~ad~il~v~d~~~~~s~~~~~~~~~~-~~~~ii~v~nK~Dl~~~-~~~~~~~~~~~~~~~-~p~~~~Sa~  130 (158)
T PRK15467         54 WYHALITTLQDVDMLIYVHGANDPESRLPAGLLDIG-VSKRQIAVISKTDMPDA-DVAATRKLLLETGFE-EPIFELNSH  130 (158)
T ss_pred             HHHHHHHHHhcCCEEEEEEeCCCcccccCHHHHhcc-CCCCeEEEEEccccCcc-cHHHHHHHHHHcCCC-CCEEEEECC
Confidence            344556678999999999999977655444444332 46899999999998653 334455555555531 259999999


Q ss_pred             CCCCCCHHHHHHHHHHHhhh
Q psy15351         84 NPNCKGVQKILPTLQHISDN  103 (352)
Q Consensus        84 ~~~~~gi~~L~~~i~~~~~~  103 (352)
                      ++  +|+++|++.+.+.+..
T Consensus       131 ~g--~gi~~l~~~l~~~~~~  148 (158)
T PRK15467        131 DP--QSVQQLVDYLASLTKQ  148 (158)
T ss_pred             Cc--cCHHHHHHHHHHhchh
Confidence            99  9999999999877654

>PRK09554 feoB ferrous iron transport protein B; Reviewed

Probab=98.84  E-value=6e-09  Score=107.95  Aligned_cols=61  Identities=28%  Similarity=0.361  Sum_probs=51.1

Q ss_pred             ceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCCcEEEEeCCCCCCC
Q psy15351        168 NTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLP  234 (352)
Q Consensus       168 ~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~~~  234 (352)
                      .++|+++|.||||||||+|+|++      ....+++.||+|.+.........+..+.++||||+.+.
T Consensus         3 ~~~IaLvG~pNvGKSTLfN~Ltg------~~~~vgn~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl   63 (772)
T PRK09554          3 KLTIGLIGNPNSGKTTLFNQLTG------ARQRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSL   63 (772)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhC------CCCccCCCCCceEeeEEEEEEcCceEEEEEECCCcccc
Confidence            36899999999999999999996      33478999999998766555555667999999999875

>KOG2655|consensus

Probab=98.84  E-value=5.8e-09  Score=97.20  Aligned_cols=166  Identities=18%  Similarity=0.242  Sum_probs=92.1

Q ss_pred             cCcceEEEEeCCCCCChHHHHHHHhCCCCCCCC-ceecCCCCCceeEeee-eEEecCC-C--cEEEEeCCCCCCCCCCCH
Q psy15351        165 EVYNTTVMVVGVPNVGKSSIINALRSSHMKKGK-AVPVGPKAGVTRSVMS-QVKISEK-P--LIYILDTPGISLPRIDNL  239 (352)
Q Consensus       165 ~~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~-~~~~~~~pg~T~~~~~-~~~~~~~-~--~~~l~DtPGi~~~~~~~~  239 (352)
                      .+-.++++++|..|.|||||||+|+...+.... .......|-.|..... .+.+..+ -  +++++||||+++.-..+.
T Consensus        18 kG~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~   97 (366)
T KOG2655|consen   18 KGFDFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSN   97 (366)
T ss_pred             cCCceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccccccc
Confidence            356799999999999999999999975332211 1111112222332221 2222222 1  578999999998532211


Q ss_pred             ---------HHHHHHHHH--hhhhhhccchhhhhHhHHhhhcCCCCCcccccccCCCCCccHHHHHHHHHHH---hcccc
Q psy15351        240 ---------ECGMRLAAC--ATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIK---KKWFK  305 (352)
Q Consensus       240 ---------~~~~~l~~~--~~i~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~a~~---~g~~~  305 (352)
                               +......++  ..+.+..+ .+..++++||.|..+.+       ++.+..   -+++..++.+   .+.+.
T Consensus        98 ~w~pi~~yi~~q~~~yl~~E~~~~R~~~-~D~RVH~cLYFI~P~gh-------gL~p~D---i~~Mk~l~~~vNiIPVI~  166 (366)
T KOG2655|consen   98 CWRPIVNYIDSQFDQYLDEESRLNRSKI-KDNRVHCCLYFISPTGH-------GLKPLD---IEFMKKLSKKVNLIPVIA  166 (366)
T ss_pred             cchhhhHHHHHHHHHHHhhhccCCcccc-cCCceEEEEEEeCCCCC-------CCcHhh---HHHHHHHhccccccceee
Confidence                     111111111  11222111 12235566666666554       343322   2344444433   33455


Q ss_pred             ccccccCCcccCCCCHHHHHHHHHHHHhCCCCcceecCcccc
Q psy15351        306 RAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDRDFL  347 (352)
Q Consensus       306 ~~~~~~~g~~~~~~d~~~a~~~~l~~~~~g~l~~~~~~~~~~  347 (352)
                      |.+++|      ..++....+.+++++....+..|.+|.+..
T Consensus       167 KaD~lT------~~El~~~K~~I~~~i~~~nI~vf~fp~~~~  202 (366)
T KOG2655|consen  167 KADTLT------KDELNQFKKRIRQDIEEHNIKVFDFPTDES  202 (366)
T ss_pred             ccccCC------HHHHHHHHHHHHHHHHHcCcceecCCCCcc
Confidence            666665      236788889999999999999998877643

>cd01895 EngA2 EngA2 subfamily

Probab=98.84  E-value=7.6e-09  Score=87.37  Aligned_cols=62  Identities=34%  Similarity=0.436  Sum_probs=49.3

Q ss_pred             ceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCCcEEEEeCCCCCCC
Q psy15351        168 NTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLP  234 (352)
Q Consensus       168 ~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~~~  234 (352)
                      .++|+++|.+|+|||||+|+|.+     ......++.|++|+..........+..+.++||||+...
T Consensus         2 ~~~i~i~G~~~~GKstli~~l~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtpG~~~~   63 (174)
T cd01895           2 PIRIAIIGRPNVGKSSLVNALLG-----EERVIVSDIAGTTRDSIDVPFEYDGKKYTLIDTAGIRRK   63 (174)
T ss_pred             CcEEEEEcCCCCCHHHHHHHHhC-----ccceeccCCCCCccCceeeEEEECCeeEEEEECCCCccc
Confidence            47899999999999999999997     344566778999888754444445567899999999865

This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>cd04163 Era Era subfamily

Probab=98.83  E-value=1.2e-08  Score=85.39  Aligned_cols=63  Identities=40%  Similarity=0.611  Sum_probs=49.2

Q ss_pred             ceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCCcEEEEeCCCCCCCC
Q psy15351        168 NTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPR  235 (352)
Q Consensus       168 ~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~~~~  235 (352)
                      ..+|+++|.||+|||||+|++.+     ...+.+++.+++|+..........+..+.++||||+..+.
T Consensus         3 ~~~i~~~G~~g~GKttl~~~l~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~   65 (168)
T cd04163           3 SGFVAIVGRPNVGKSTLLNALVG-----QKISIVSPKPQTTRNRIRGIYTDDDAQIIFVDTPGIHKPK   65 (168)
T ss_pred             eeEEEEECCCCCCHHHHHHHHhC-----CceEeccCCCCceeceEEEEEEcCCeEEEEEECCCCCcch
Confidence            36799999999999999999997     4556677778888876554444444568999999998653

Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.

>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB

Probab=98.83  E-value=1.4e-08  Score=87.29  Aligned_cols=63  Identities=27%  Similarity=0.374  Sum_probs=49.0

Q ss_pred             CcceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCCcEEEEeCCCCCCCC
Q psy15351        166 VYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPR  235 (352)
Q Consensus       166 ~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~~~~  235 (352)
                      ...++|+++|.+|+|||||+|+|++.    .....+++.+|+|++... +...  .++.++||||+....
T Consensus        16 ~~~~~i~ivG~~~~GKStlin~l~~~----~~~~~~~~~~~~t~~~~~-~~~~--~~~~liDtpG~~~~~   78 (179)
T TIGR03598        16 DDGPEIAFAGRSNVGKSSLINALTNR----KKLARTSKTPGRTQLINF-FEVN--DGFRLVDLPGYGYAK   78 (179)
T ss_pred             CCCCEEEEEcCCCCCHHHHHHHHhCC----CCcccccCCCCcceEEEE-EEeC--CcEEEEeCCCCcccc
Confidence            35689999999999999999999972    125677889999988653 3322  369999999987653

Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.

>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2)

Probab=98.82  E-value=5e-08  Score=85.68  Aligned_cols=99  Identities=11%  Similarity=0.112  Sum_probs=65.9

Q ss_pred             HHHHHHHHhhccCEEEEEEcCCCCC-CCcCHHHHHHHh--CCCCEEEEEEcccCCCccchHHHHHH----HHhhcCCCCc
Q psy15351          4 GLKDIEKHLKNVDIVIEVHDSRMPF-TGRNHLLQQSVQ--NIRPMVLVLNKRDLINSKHESLIEEK----VRKEQSHISE   76 (352)
Q Consensus         4 ~~~~~~~~i~~aD~vl~VvDar~p~-~~~~~~l~~~l~--~~k~~ilVlNK~Dl~~~~~~~~~~~~----~~~~~~~~~~   76 (352)
                      ..+.+...+..+|++++|+|++.+. ..........+.  ..+|+++|+||+|+.++.......+.    +........+
T Consensus        96 ~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~~~~~iiivvNK~Dl~~~~~~~~~~~~i~~~~~~~~~~~~~  175 (203)
T cd01888          96 LMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIMGLKHIIIVQNKIDLVKEEQALENYEQIKKFVKGTIAENAP  175 (203)
T ss_pred             HHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHcCCCcEEEEEEchhccCHHHHHHHHHHHHHHHhccccCCCc
Confidence            3556777888999999999999752 222222222222  33578999999999875433222222    2221111125


Q ss_pred             EEEeecCCCCCCCHHHHHHHHHHHhhhc
Q psy15351         77 VIFTNCRNPNCKGVQKILPTLQHISDNM  104 (352)
Q Consensus        77 v~~iSa~~~~~~gi~~L~~~i~~~~~~~  104 (352)
                      ++++||+++  +|+++|++++.+.+++.
T Consensus       176 i~~vSA~~g--~gi~~L~~~l~~~l~~~  201 (203)
T cd01888         176 IIPISAQLK--YNIDVLLEYIVKKIPTP  201 (203)
T ss_pred             EEEEeCCCC--CCHHHHHHHHHHhCCCC
Confidence            899999999  99999999998877654

eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel

>cd01878 HflX HflX subfamily

Probab=98.80  E-value=8.8e-09  Score=90.32  Aligned_cols=63  Identities=25%  Similarity=0.271  Sum_probs=45.6

Q ss_pred             CcceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeE-EecCCCcEEEEeCCCCCCC
Q psy15351        166 VYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQV-KISEKPLIYILDTPGISLP  234 (352)
Q Consensus       166 ~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~-~~~~~~~~~l~DtPGi~~~  234 (352)
                      +..++|+++|.+|||||||+|++.+.      ...+.+.+++|....... ...+...+.++||||+...
T Consensus        39 ~~~~~I~iiG~~g~GKStLl~~l~~~------~~~~~~~~~~t~~~~~~~~~~~~~~~~~i~Dt~G~~~~  102 (204)
T cd01878          39 SGIPTVALVGYTNAGKSTLFNALTGA------DVYAEDQLFATLDPTTRRLRLPDGREVLLTDTVGFIRD  102 (204)
T ss_pred             cCCCeEEEECCCCCCHHHHHHHHhcc------hhccCCccceeccceeEEEEecCCceEEEeCCCccccC
Confidence            45589999999999999999999962      234455667776655432 2223337999999999754

A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.

>TIGR02528 EutP ethanolamine utilization protein, EutP

Probab=98.80  E-value=5.9e-08  Score=79.77  Aligned_cols=85  Identities=12%  Similarity=0.193  Sum_probs=61.6

Q ss_pred             HHHHhhccCEEEEEEcCCCCCCCcCHHHHHHHhCCCCEEEEEEcccCCCccc-hHHHHHHHHhhcCCCCcEEEeecCCCC
Q psy15351          8 IEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKH-ESLIEEKVRKEQSHISEVIFTNCRNPN   86 (352)
Q Consensus         8 ~~~~i~~aD~vl~VvDar~p~~~~~~~l~~~l~~~k~~ilVlNK~Dl~~~~~-~~~~~~~~~~~~~~~~~v~~iSa~~~~   86 (352)
                      +...+.++|++++|+|+.++.+..+..+.+.+  .+|+++|+||+|+.+... .+...+++++.+..  +++.+||+++ 
T Consensus        56 ~~~~~~~ad~vilv~d~~~~~s~~~~~~~~~~--~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~--~~~~~Sa~~~-  130 (142)
T TIGR02528        56 LIVTAADADVIALVQSATDPESRFPPGFASIF--VKPVIGLVTKIDLAEADVDIERAKELLETAGAE--PIFEISSVDE-  130 (142)
T ss_pred             HHHHhhcCCEEEEEecCCCCCcCCChhHHHhc--cCCeEEEEEeeccCCcccCHHHHHHHHHHcCCC--cEEEEecCCC-
Confidence            33457899999999999988876665544433  469999999999976432 22333444444442  4889999999 


Q ss_pred             CCCHHHHHHHHH
Q psy15351         87 CKGVQKILPTLQ   98 (352)
Q Consensus        87 ~~gi~~L~~~i~   98 (352)
                       .|++++++++.
T Consensus       131 -~gi~~l~~~l~  141 (142)
T TIGR02528       131 -QGLEALVDYLN  141 (142)
T ss_pred             -CCHHHHHHHHh
Confidence             99999988763

This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.

>PRK15494 era GTPase Era; Provisional

Probab=98.80  E-value=3.3e-08  Score=93.63  Aligned_cols=97  Identities=15%  Similarity=0.135  Sum_probs=72.5

Q ss_pred             HHHHHHHhhccCEEEEEEcCCCCCCCcCHHHHHHHh-CCCCEEEEEEcccCCCccchHHHHHHHHhhcCCCCcEEEeecC
Q psy15351          5 LKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQ-NIRPMVLVLNKRDLINSKHESLIEEKVRKEQSHISEVIFTNCR   83 (352)
Q Consensus         5 ~~~~~~~i~~aD~vl~VvDar~p~~~~~~~l~~~l~-~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~v~~iSa~   83 (352)
                      .+.++..+..||++++|+|++.++...+..+.+.++ .+.|.++|+||+|+.+. ...+..+++.+.+ .+.+++++||+
T Consensus       122 ~r~~~~~l~~aDvil~VvD~~~s~~~~~~~il~~l~~~~~p~IlViNKiDl~~~-~~~~~~~~l~~~~-~~~~i~~iSAk  199 (339)
T PRK15494        122 VRCAWSSLHSADLVLLIIDSLKSFDDITHNILDKLRSLNIVPIFLLNKIDIESK-YLNDIKAFLTENH-PDSLLFPISAL  199 (339)
T ss_pred             HHHHHHHhhhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEEhhcCccc-cHHHHHHHHHhcC-CCcEEEEEecc
Confidence            345667789999999999998876655545555544 46788999999999754 3344555554332 12358999999


Q ss_pred             CCCCCCHHHHHHHHHHHhhhcc
Q psy15351         84 NPNCKGVQKILPTLQHISDNMT  105 (352)
Q Consensus        84 ~~~~~gi~~L~~~i~~~~~~~~  105 (352)
                      ++  .|+++++++|.+.+++++
T Consensus       200 tg--~gv~eL~~~L~~~l~~~~  219 (339)
T PRK15494        200 SG--KNIDGLLEYITSKAKISP  219 (339)
T ss_pred             Cc--cCHHHHHHHHHHhCCCCC
Confidence            99  999999999999988765

>cd01890 LepA LepA subfamily

Probab=98.79  E-value=7.2e-08  Score=82.39  Aligned_cols=95  Identities=15%  Similarity=0.200  Sum_probs=64.1

Q ss_pred             HHHHHHHhhccCEEEEEEcCCCCCCCcCHHH-HHHHhCCCCEEEEEEcccCCCccchHHHHHHHHh-hcCCCCcEEEeec
Q psy15351          5 LKDIEKHLKNVDIVIEVHDSRMPFTGRNHLL-QQSVQNIRPMVLVLNKRDLINSKHESLIEEKVRK-EQSHISEVIFTNC   82 (352)
Q Consensus         5 ~~~~~~~i~~aD~vl~VvDar~p~~~~~~~l-~~~l~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~-~~~~~~~v~~iSa   82 (352)
                      ...+...+..+|++|+|+|++++....+... ......++|+++|+||+|+.+... ....+.+.+ .+....+++.+||
T Consensus        81 ~~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~~~~~~iiiv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~Sa  159 (179)
T cd01890          81 SYEVSRSLAACEGALLLVDATQGVEAQTLANFYLALENNLEIIPVINKIDLPSADP-ERVKQQIEDVLGLDPSEAILVSA  159 (179)
T ss_pred             HHHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHHHcCCCEEEEEECCCCCcCCH-HHHHHHHHHHhCCCcccEEEeec
Confidence            3455667889999999999988655433222 222225789999999999865332 112222222 2333234899999


Q ss_pred             CCCCCCCHHHHHHHHHHHhh
Q psy15351         83 RNPNCKGVQKILPTLQHISD  102 (352)
Q Consensus        83 ~~~~~~gi~~L~~~i~~~~~  102 (352)
                      +++  .|+++|++++.+.++
T Consensus       160 ~~g--~gi~~l~~~l~~~~~  177 (179)
T cd01890         160 KTG--LGVEDLLEAIVERIP  177 (179)
T ss_pred             cCC--CCHHHHHHHHHhhCC
Confidence            999  999999999876553

LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.

>COG2262 HflX GTPases [General function prediction only]

Probab=98.79  E-value=4.8e-08  Score=91.78  Aligned_cols=109  Identities=17%  Similarity=0.342  Sum_probs=76.8

Q ss_pred             hhHHHHHHHHhhccCEEEEEEcCCCCCCCcC-HHHHHHHh----CCCCEEEEEEcccCCCccchHHHHHHHHhhcCCCCc
Q psy15351          2 GRGLKDIEKHLKNVDIVIEVHDSRMPFTGRN-HLLQQSVQ----NIRPMVLVLNKRDLINSKHESLIEEKVRKEQSHISE   76 (352)
Q Consensus         2 ~~~~~~~~~~i~~aD~vl~VvDar~p~~~~~-~~l~~~l~----~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~   76 (352)
                      ..|++.+.+.+..||++++|+|+.+|..... ....+.+.    ..+|+|+|+||+|+++...   ....+... .+  +
T Consensus       259 V~AFksTLEE~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~~~~~---~~~~~~~~-~~--~  332 (411)
T COG2262         259 VEAFKSTLEEVKEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDLLEDEE---ILAELERG-SP--N  332 (411)
T ss_pred             HHHHHHHHHHhhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEEecccccCchh---hhhhhhhc-CC--C
Confidence            4688999999999999999999999832211 11223333    4689999999999987664   22222221 12  4


Q ss_pred             EEEeecCCCCCCCHHHHHHHHHHHhhhccccccccccceeEEEeccCCCC
Q psy15351         77 VIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG  126 (352)
Q Consensus        77 v~~iSa~~~~~~gi~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~nvg  126 (352)
                      .+++||+++  .|++.|++.|.+.++...        ......+++.+.|
T Consensus       333 ~v~iSA~~~--~gl~~L~~~i~~~l~~~~--------~~~~l~lp~~~~~  372 (411)
T COG2262         333 PVFISAKTG--EGLDLLRERIIELLSGLR--------TEVTLELPYTDAG  372 (411)
T ss_pred             eEEEEeccC--cCHHHHHHHHHHHhhhcc--------cceEEEcCccccc
Confidence            889999999  999999999998887432        3444556666666

>PRK00454 engB GTP-binding protein YsxC; Reviewed

Probab=98.78  E-value=1.6e-08  Score=87.79  Aligned_cols=62  Identities=26%  Similarity=0.374  Sum_probs=48.7

Q ss_pred             CcceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCCcEEEEeCCCCCCC
Q psy15351        166 VYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLP  234 (352)
Q Consensus       166 ~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~~~  234 (352)
                      ...++|+++|.+|||||||+|+|++.    .....+++.+|+|+.... +..  +.++.++||||+...
T Consensus        22 ~~~~~v~ivG~~~~GKSsli~~l~~~----~~~~~~~~~~~~t~~~~~-~~~--~~~l~l~DtpG~~~~   83 (196)
T PRK00454         22 DDGPEIAFAGRSNVGKSSLINALTNR----KNLARTSKTPGRTQLINF-FEV--NDKLRLVDLPGYGYA   83 (196)
T ss_pred             CCCCEEEEEcCCCCCHHHHHHHHhCC----CCcccccCCCCceeEEEE-Eec--CCeEEEeCCCCCCCc
Confidence            35688999999999999999999972    125678889999988643 322  357999999998754

>PRK00089 era GTPase Era; Reviewed

Probab=98.78  E-value=5.5e-08  Score=90.31  Aligned_cols=97  Identities=21%  Similarity=0.293  Sum_probs=74.2

Q ss_pred             HHHHHHhhccCEEEEEEcCCCCCCCcCHHHHHHHh-CCCCEEEEEEcccCC-CccchHHHHHHHHhhcCCCCcEEEeecC
Q psy15351          6 KDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQ-NIRPMVLVLNKRDLI-NSKHESLIEEKVRKEQSHISEVIFTNCR   83 (352)
Q Consensus         6 ~~~~~~i~~aD~vl~VvDar~p~~~~~~~l~~~l~-~~k~~ilVlNK~Dl~-~~~~~~~~~~~~~~~~~~~~~v~~iSa~   83 (352)
                      +.++..+..+|++++|+|+..++......+.+.++ .+.|+++|+||+|+. +........+.+.+.. .+.+++.+||+
T Consensus        76 ~~~~~~~~~~D~il~vvd~~~~~~~~~~~i~~~l~~~~~pvilVlNKiDl~~~~~~l~~~~~~l~~~~-~~~~i~~iSA~  154 (292)
T PRK00089         76 KAAWSSLKDVDLVLFVVDADEKIGPGDEFILEKLKKVKTPVILVLNKIDLVKDKEELLPLLEELSELM-DFAEIVPISAL  154 (292)
T ss_pred             HHHHHHHhcCCEEEEEEeCCCCCChhHHHHHHHHhhcCCCEEEEEECCcCCCCHHHHHHHHHHHHhhC-CCCeEEEecCC
Confidence            45677889999999999999876665556656554 468999999999998 4444455555554421 23469999999


Q ss_pred             CCCCCCHHHHHHHHHHHhhhcc
Q psy15351         84 NPNCKGVQKILPTLQHISDNMT  105 (352)
Q Consensus        84 ~~~~~gi~~L~~~i~~~~~~~~  105 (352)
                      ++  .|+++|++++.+.+++++
T Consensus       155 ~~--~gv~~L~~~L~~~l~~~~  174 (292)
T PRK00089        155 KG--DNVDELLDVIAKYLPEGP  174 (292)
T ss_pred             CC--CCHHHHHHHHHHhCCCCC
Confidence            99  999999999998887654

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=98.77  E-value=4.1e-08  Score=96.08  Aligned_cols=96  Identities=21%  Similarity=0.387  Sum_probs=70.9

Q ss_pred             HHHHHhhccCEEEEEEcCCCCCCCcCHHHHHHHh-CCCCEEEEEEcccCC-CccchHHHHHHHHhhc--CCCCcEEEeec
Q psy15351          7 DIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQ-NIRPMVLVLNKRDLI-NSKHESLIEEKVRKEQ--SHISEVIFTNC   82 (352)
Q Consensus         7 ~~~~~i~~aD~vl~VvDar~p~~~~~~~l~~~l~-~~k~~ilVlNK~Dl~-~~~~~~~~~~~~~~~~--~~~~~v~~iSa   82 (352)
                      ++...+..+|++|+|+|+.++.+..+..+...+. .++|+++|+||+|++ +.+......+.+....  ....+++++||
T Consensus       247 ~~~~~~~~ad~~ilV~D~~~~~~~~~~~~~~~~~~~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vi~~SA  326 (429)
T TIGR03594       247 RTLKAIERADVVLLVLDATEGITEQDLRIAGLILEAGKALVIVVNKWDLVKDEKTREEFKKELRRKLPFLDFAPIVFISA  326 (429)
T ss_pred             HHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHcCCcEEEEEECcccCCCHHHHHHHHHHHHHhcccCCCCceEEEeC
Confidence            3456789999999999999887776665555544 689999999999998 3333344444443321  12236999999


Q ss_pred             CCCCCCCHHHHHHHHHHHhhhc
Q psy15351         83 RNPNCKGVQKILPTLQHISDNM  104 (352)
Q Consensus        83 ~~~~~~gi~~L~~~i~~~~~~~  104 (352)
                      +++  .|++++++++.+.....
T Consensus       327 ~~g--~~v~~l~~~i~~~~~~~  346 (429)
T TIGR03594       327 LTG--QGVDKLLDAIDEVYENA  346 (429)
T ss_pred             CCC--CCHHHHHHHHHHHHHHh
Confidence            999  99999999998776544

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>PRK00093 GTP-binding protein Der; Reviewed

Probab=98.76  E-value=4.8e-08  Score=95.81  Aligned_cols=96  Identities=22%  Similarity=0.350  Sum_probs=72.9

Q ss_pred             HHHHHhhccCEEEEEEcCCCCCCCcCHHHHHHHh-CCCCEEEEEEcccCCCccchHHHHHHHHhh--cCCCCcEEEeecC
Q psy15351          7 DIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQ-NIRPMVLVLNKRDLINSKHESLIEEKVRKE--QSHISEVIFTNCR   83 (352)
Q Consensus         7 ~~~~~i~~aD~vl~VvDar~p~~~~~~~l~~~l~-~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~--~~~~~~v~~iSa~   83 (352)
                      ++.+.+..+|++|+|+|+..+.+..+..+..++. .++|+++|+||+|+.+++...++.+.+...  .....+++++||+
T Consensus       248 ~~~~~~~~ad~~ilViD~~~~~~~~~~~i~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~i~~~SA~  327 (435)
T PRK00093        248 RTLKAIERADVVLLVIDATEGITEQDLRIAGLALEAGRALVIVVNKWDLVDEKTMEEFKKELRRRLPFLDYAPIVFISAL  327 (435)
T ss_pred             HHHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCcEEEEEECccCCCHHHHHHHHHHHHHhcccccCCCEEEEeCC
Confidence            3556889999999999999988777666665554 689999999999998655444555544332  1122369999999


Q ss_pred             CCCCCCHHHHHHHHHHHhhhc
Q psy15351         84 NPNCKGVQKILPTLQHISDNM  104 (352)
Q Consensus        84 ~~~~~gi~~L~~~i~~~~~~~  104 (352)
                      ++  .|++++++.+.+.....
T Consensus       328 ~~--~gv~~l~~~i~~~~~~~  346 (435)
T PRK00093        328 TG--QGVDKLLEAIDEAYENA  346 (435)
T ss_pred             CC--CCHHHHHHHHHHHHHHH
Confidence            99  99999999988776544

>cd04165 GTPBP1_like GTPBP1-like

Probab=98.75  E-value=7.5e-08  Score=85.83  Aligned_cols=95  Identities=16%  Similarity=0.068  Sum_probs=68.3

Q ss_pred             hHHHHHHHHhh--ccCEEEEEEcCCCCCCCcCHHHHHHHh-CCCCEEEEEEcccCCCccchHHHHH----HHHhhcC---
Q psy15351          3 RGLKDIEKHLK--NVDIVIEVHDSRMPFTGRNHLLQQSVQ-NIRPMVLVLNKRDLINSKHESLIEE----KVRKEQS---   72 (352)
Q Consensus         3 ~~~~~~~~~i~--~aD~vl~VvDar~p~~~~~~~l~~~l~-~~k~~ilVlNK~Dl~~~~~~~~~~~----~~~~~~~---   72 (352)
                      +..+.+...+.  .+|++++|+|++.++...+..+..++. .+.|+++|+||+|+++++......+    .++..+.   
T Consensus        96 ~~~~~~~~~~~~~~~D~~llVvda~~g~~~~d~~~l~~l~~~~ip~ivvvNK~D~~~~~~~~~~~~~l~~~L~~~g~~~~  175 (224)
T cd04165          96 RYLKTTLFGLTGYAPDYAMLVVAANAGIIGMTKEHLGLALALNIPVFVVVTKIDLAPANILQETLKDLKRILKVPGVRKL  175 (224)
T ss_pred             HHHHHHHHhhcccCCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEECccccCHHHHHHHHHHHHHHhcCCCcccc
Confidence            34556666664  789999999999887766666666655 6899999999999987654333333    3321111   


Q ss_pred             --------------------CCCcEEEeecCCCCCCCHHHHHHHHHH
Q psy15351         73 --------------------HISEVIFTNCRNPNCKGVQKILPTLQH   99 (352)
Q Consensus        73 --------------------~~~~v~~iSa~~~~~~gi~~L~~~i~~   99 (352)
                                          ...+++.+||.++  +|+++|.+.|..
T Consensus       176 p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg--~Gi~~L~~~L~~  220 (224)
T cd04165         176 PVPVKSDDDVVLAASNFSSERIVPIFQVSNVTG--EGLDLLHAFLNL  220 (224)
T ss_pred             ceeeecccceeehhhcCCccccCcEEEeeCCCc--cCHHHHHHHHHh
Confidence                                0126899999999  999999988764

Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and

>PRK09866 hypothetical protein; Provisional

Probab=98.75  E-value=6.1e-08  Score=96.23  Aligned_cols=92  Identities=11%  Similarity=0.059  Sum_probs=69.4

Q ss_pred             HHHHHhhccCEEEEEEcCCCCCCCcCHHHHHHHh-CC--CCEEEEEEcccCCCccc--hHHHHHH----HHhhcCCCCcE
Q psy15351          7 DIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQ-NI--RPMVLVLNKRDLINSKH--ESLIEEK----VRKEQSHISEV   77 (352)
Q Consensus         7 ~~~~~i~~aD~vl~VvDar~p~~~~~~~l~~~l~-~~--k~~ilVlNK~Dl~~~~~--~~~~~~~----~~~~~~~~~~v   77 (352)
                      .+.+.+..+|+|++|+|++.+++..+..+.+.++ .+  .|+++|+||+|+.+++.  .+...++    +.+...++..+
T Consensus       251 ~M~eqL~eADvVLFVVDat~~~s~~DeeIlk~Lkk~~K~~PVILVVNKIDl~dreeddkE~Lle~V~~~L~q~~i~f~eI  330 (741)
T PRK09866        251 MLNQQLARASAVLAVLDYTQLKSISDEEVREAILAVGQSVPLYVLVNKFDQQDRNSDDADQVRALISGTLMKGCITPQQI  330 (741)
T ss_pred             HHHHHHhhCCEEEEEEeCCCCCChhHHHHHHHHHhcCCCCCEEEEEEcccCCCcccchHHHHHHHHHHHHHhcCCCCceE
Confidence            4567899999999999999877777777777666 34  49999999999975322  2233333    22334455689


Q ss_pred             EEeecCCCCCCCHHHHHHHHHHH
Q psy15351         78 IFTNCRNPNCKGVQKILPTLQHI  100 (352)
Q Consensus        78 ~~iSa~~~~~~gi~~L~~~i~~~  100 (352)
                      +++||+++  .|++.|++.|.+.
T Consensus       331 fPVSAlkG--~nid~LLdeI~~~  351 (741)
T PRK09866        331 FPVSSMWG--YLANRARHELANN  351 (741)
T ss_pred             EEEeCCCC--CCHHHHHHHHHhC
Confidence            99999999  9999999998763

>cd04171 SelB SelB subfamily

Probab=98.75  E-value=9.9e-08  Score=79.98  Aligned_cols=93  Identities=16%  Similarity=0.217  Sum_probs=62.0

Q ss_pred             HHHHHHHhhccCEEEEEEcCCCCCCCcCHHHHHHHh--CCCCEEEEEEcccCCCccc----hHHHHHHHHhhcCCCCcEE
Q psy15351          5 LKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQ--NIRPMVLVLNKRDLINSKH----ESLIEEKVRKEQSHISEVI   78 (352)
Q Consensus         5 ~~~~~~~i~~aD~vl~VvDar~p~~~~~~~l~~~l~--~~k~~ilVlNK~Dl~~~~~----~~~~~~~~~~~~~~~~~v~   78 (352)
                      .+.+...+..+|++++|+|+++++..........++  ..+|+++|+||+|+.+...    ..++.+.++..+....+++
T Consensus        65 ~~~~~~~~~~ad~ii~V~d~~~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  144 (164)
T cd04171          65 IKNMLAGAGGIDLVLLVVAADEGIMPQTREHLEILELLGIKRGLVVLTKADLVDEDWLELVEEEIRELLAGTFLADAPIF  144 (164)
T ss_pred             HHHHHhhhhcCCEEEEEEECCCCccHhHHHHHHHHHHhCCCcEEEEEECccccCHHHHHHHHHHHHHHHHhcCcCCCcEE
Confidence            344566778999999999998754333222222222  3359999999999986532    2344444544211122599


Q ss_pred             EeecCCCCCCCHHHHHHHHHH
Q psy15351         79 FTNCRNPNCKGVQKILPTLQH   99 (352)
Q Consensus        79 ~iSa~~~~~~gi~~L~~~i~~   99 (352)
                      .+||+++  .|++++++.+.+
T Consensus       145 ~~Sa~~~--~~v~~l~~~l~~  163 (164)
T cd04171         145 PVSAVTG--EGIEELKEYLDE  163 (164)
T ss_pred             EEeCCCC--cCHHHHHHHHhh
Confidence            9999999  999999988753

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo

>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1

Probab=98.74  E-value=1.2e-08  Score=86.79  Aligned_cols=55  Identities=35%  Similarity=0.404  Sum_probs=43.4

Q ss_pred             EeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecC-CCcEEEEeCCCCCC
Q psy15351        173 VVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISE-KPLIYILDTPGISL  233 (352)
Q Consensus       173 i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~-~~~~~l~DtPGi~~  233 (352)
                      ++|.+|||||||+|+|.+     ... .+++.|++|+.+........ +..+.++||||+..
T Consensus         1 iiG~~~~GKStll~~l~~-----~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~i~DtpG~~~   56 (176)
T cd01881           1 LVGLPNVGKSTLLNALTN-----AKP-KVANYPFTTLEPNLGVVEVPDGARIQVADIPGLIE   56 (176)
T ss_pred             CCCCCCCcHHHHHHHHhc-----CCc-cccCCCceeecCcceEEEcCCCCeEEEEeccccch
Confidence            579999999999999997     232 67888999988765443344 66899999999864

Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to

>cd01895 EngA2 EngA2 subfamily

Probab=98.71  E-value=1.5e-07  Score=79.37  Aligned_cols=91  Identities=20%  Similarity=0.376  Sum_probs=66.8

Q ss_pred             HHHHhhccCEEEEEEcCCCCCCCcCHHHHHHHh-CCCCEEEEEEcccCCCc--cchHHHHHHHHhhc--CCCCcEEEeec
Q psy15351          8 IEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQ-NIRPMVLVLNKRDLINS--KHESLIEEKVRKEQ--SHISEVIFTNC   82 (352)
Q Consensus         8 ~~~~i~~aD~vl~VvDar~p~~~~~~~l~~~l~-~~k~~ilVlNK~Dl~~~--~~~~~~~~~~~~~~--~~~~~v~~iSa   82 (352)
                      +...+..+|++++|+|+.++.+.....+...+. .++|+++|+||+|+.+.  ...+.+.+.+++..  ....+++.+||
T Consensus        78 ~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  157 (174)
T cd01895          78 TLKAIERADVVLLVIDATEGITEQDLRIAGLILEEGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAPIVFISA  157 (174)
T ss_pred             HHHHHhhcCeEEEEEeCCCCcchhHHHHHHHHHhcCCCEEEEEeccccCCccHHHHHHHHHHHHhhcccccCCceEEEec
Confidence            445678999999999999887765555444443 57999999999999876  33445555554431  11235999999


Q ss_pred             CCCCCCCHHHHHHHHHHH
Q psy15351         83 RNPNCKGVQKILPTLQHI  100 (352)
Q Consensus        83 ~~~~~~gi~~L~~~i~~~  100 (352)
                      +++  .|++++++++.++
T Consensus       158 ~~~--~~i~~~~~~l~~~  173 (174)
T cd01895         158 LTG--QGVDKLFDAIDEV  173 (174)
T ss_pred             cCC--CCHHHHHHHHHHh
Confidence            999  9999999888653

This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []

Probab=98.70  E-value=8.5e-09  Score=94.81  Aligned_cols=160  Identities=18%  Similarity=0.212  Sum_probs=70.4

Q ss_pred             ceEEEEeCCCCCChHHHHHHHhCCCCCCCCce---ecCCCCCc-eeEeeeeEEecCCC---cEEEEeCCCCCCCCCCCHH
Q psy15351        168 NTTVMVVGVPNVGKSSIINALRSSHMKKGKAV---PVGPKAGV-TRSVMSQVKISEKP---LIYILDTPGISLPRIDNLE  240 (352)
Q Consensus       168 ~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~---~~~~~pg~-T~~~~~~~~~~~~~---~~~l~DtPGi~~~~~~~~~  240 (352)
                      .++|+++|.+|+|||||||+|++..+......   .....+.+ +... ....+..+.   ++.++||||+++.-  +.+
T Consensus         4 ~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~l~e~~~~l~LtiiDTpGfGd~i--~n~   80 (281)
T PF00735_consen    4 NFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEE-RTVELEENGVKLNLTIIDTPGFGDNI--DNS   80 (281)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEE-EEEEEEETCEEEEEEEEEEC-CSSSS--THC
T ss_pred             eEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceee-EEEEeccCCcceEEEEEeCCCccccc--cch
Confidence            58999999999999999999998543322100   00111112 1221 122222211   58899999998752  211


Q ss_pred             HHHHHHHHhhhhhh-------------ccchhhhhHhHHhhhcCCCCCcccccccCCCCCccHHHHHHHHHHHh---ccc
Q psy15351        241 CGMRLAACATLQDH-------------LVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIKK---KWF  304 (352)
Q Consensus       241 ~~~~l~~~~~i~~~-------------~~~~~~~~~~il~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~a~~~---g~~  304 (352)
                      .... .+...|.+.             ....+..++++|+.+.....       ++.+  .|+ +++..+..+-   ..+
T Consensus        81 ~~~~-~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~-------~L~~--~Di-~~mk~Ls~~vNvIPvI  149 (281)
T PF00735_consen   81 DCWE-PIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGH-------GLKP--LDI-EFMKRLSKRVNVIPVI  149 (281)
T ss_dssp             HHHH-HHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSS-------SS-H--HHH-HHHHHHTTTSEEEEEE
T ss_pred             hhhH-HHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCc-------cchH--HHH-HHHHHhcccccEEeEE
Confidence            1111 011111100             00112223444444443221       2211  123 4566665433   234


Q ss_pred             cccccccCCcccCCCCHHHHHHHHHHHHhCCCCcceecCcccc
Q psy15351        305 KRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDRDFL  347 (352)
Q Consensus       305 ~~~~~~~~g~~~~~~d~~~a~~~~l~~~~~g~l~~~~~~~~~~  347 (352)
                      .|.+.++      ..++......+.++++...+..|.++.+..
T Consensus       150 aKaD~lt------~~el~~~k~~i~~~l~~~~I~~f~f~~~~~  186 (281)
T PF00735_consen  150 AKADTLT------PEELQAFKQRIREDLEENNIKIFDFPEDDD  186 (281)
T ss_dssp             STGGGS-------HHHHHHHHHHHHHHHHHTT--S--------
T ss_pred             ecccccC------HHHHHHHHHHHHHHHHHcCceeeccccccc
Confidence            4554444      236777888999999999999988766554

Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.

>cd01889 SelB_euk SelB subfamily

Probab=98.68  E-value=1.8e-07  Score=81.27  Aligned_cols=96  Identities=18%  Similarity=0.217  Sum_probs=64.7

Q ss_pred             HHHHHHHhhccCEEEEEEcCCCCCCCcCHHHHHHHh-CCCCEEEEEEcccCCCccch----HHHHHHHHhh----cCCCC
Q psy15351          5 LKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQ-NIRPMVLVLNKRDLINSKHE----SLIEEKVRKE----QSHIS   75 (352)
Q Consensus         5 ~~~~~~~i~~aD~vl~VvDar~p~~~~~~~l~~~l~-~~k~~ilVlNK~Dl~~~~~~----~~~~~~~~~~----~~~~~   75 (352)
                      ++.+...+..+|.+++|+|++.+......+...+.. .+.|+++|+||+|+...+..    +++.+.+...    +....
T Consensus        82 ~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  161 (192)
T cd01889          82 IRTIIGGAQIIDLMLLVVDATKGIQTQTAECLVIGEILCKKLIVVLNKIDLIPEEERERKIEKMKKKLQKTLEKTRFKNS  161 (192)
T ss_pred             HHHHHHHHhhCCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEECcccCCHHHHHHHHHHHHHHHHHHHHhcCcCCC
Confidence            566667778899999999998765433322222222 57899999999999865432    2233322211    11112


Q ss_pred             cEEEeecCCCCCCCHHHHHHHHHHHhh
Q psy15351         76 EVIFTNCRNPNCKGVQKILPTLQHISD  102 (352)
Q Consensus        76 ~v~~iSa~~~~~~gi~~L~~~i~~~~~  102 (352)
                      +++.+||+++  .|+++|++++.+.++
T Consensus       162 ~vi~iSa~~g--~gi~~L~~~l~~~~~  186 (192)
T cd01889         162 PIIPVSAKPG--GGEAELGKDLNNLIV  186 (192)
T ss_pred             CEEEEeccCC--CCHHHHHHHHHhccc
Confidence            5999999999  999999999987654

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk

>TIGR02729 Obg_CgtA Obg family GTPase CgtA

Probab=98.67  E-value=8.6e-08  Score=90.26  Aligned_cols=91  Identities=18%  Similarity=0.274  Sum_probs=64.1

Q ss_pred             HHHHHHhhccCEEEEEEcCCCCCC-----CcC---HHHHHHHh--CCCCEEEEEEcccCCCccchHHHHHHHHhh-cCCC
Q psy15351          6 KDIEKHLKNVDIVIEVHDSRMPFT-----GRN---HLLQQSVQ--NIRPMVLVLNKRDLINSKHESLIEEKVRKE-QSHI   74 (352)
Q Consensus         6 ~~~~~~i~~aD~vl~VvDar~p~~-----~~~---~~l~~~l~--~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~-~~~~   74 (352)
                      .+++++++++|++++|+|+.+.-.     ...   .++..+..  ..+|+++|+||+|+.+.....++.+.+.+. +.  
T Consensus       227 ~~flrhierad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~~~~~~~~l~~~~~~--  304 (329)
T TIGR02729       227 HRFLKHIERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEEELAELLKELKKALGK--  304 (329)
T ss_pred             HHHHHHHHhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChHHHHHHHHHHHHHcCC--
Confidence            356788999999999999986411     111   11111111  368999999999998765555555555433 43  


Q ss_pred             CcEEEeecCCCCCCCHHHHHHHHHHHh
Q psy15351         75 SEVIFTNCRNPNCKGVQKILPTLQHIS  101 (352)
Q Consensus        75 ~~v~~iSa~~~~~~gi~~L~~~i~~~~  101 (352)
                       +++++||+++  +|++++++++.+.+
T Consensus       305 -~vi~iSAktg--~GI~eL~~~I~~~l  328 (329)
T TIGR02729       305 -PVFPISALTG--EGLDELLYALAELL  328 (329)
T ss_pred             -cEEEEEccCC--cCHHHHHHHHHHHh
Confidence             4999999999  99999999987654

This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.

>cd01898 Obg Obg subfamily

Probab=98.67  E-value=1.2e-07  Score=80.11  Aligned_cols=90  Identities=18%  Similarity=0.292  Sum_probs=62.2

Q ss_pred             HHHHHHhhccCEEEEEEcCCCC-CCCcC-HHHHHHHh------CCCCEEEEEEcccCCCccchHHHHHHHHhh--cCCCC
Q psy15351          6 KDIEKHLKNVDIVIEVHDSRMP-FTGRN-HLLQQSVQ------NIRPMVLVLNKRDLINSKHESLIEEKVRKE--QSHIS   75 (352)
Q Consensus         6 ~~~~~~i~~aD~vl~VvDar~p-~~~~~-~~l~~~l~------~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~--~~~~~   75 (352)
                      ..+++.+..+|++++|+|++++ -+... ..+.+.+.      .++|+++|+||+|+.+......+.+.+...  +.   
T Consensus        70 ~~~~~~~~~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~---  146 (170)
T cd01898          70 HRFLRHIERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEELFELLKELLKELWGK---  146 (170)
T ss_pred             HHHHHHHHhCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchhhHHHHHHHHhhCCCC---
Confidence            3445667789999999999876 22111 12222121      268999999999998876655555544333  33   


Q ss_pred             cEEEeecCCCCCCCHHHHHHHHHHH
Q psy15351         76 EVIFTNCRNPNCKGVQKILPTLQHI  100 (352)
Q Consensus        76 ~v~~iSa~~~~~~gi~~L~~~i~~~  100 (352)
                      +++.+||+++  .|++++++++.++
T Consensus       147 ~~~~~Sa~~~--~gi~~l~~~i~~~  169 (170)
T cd01898         147 PVFPISALTG--EGLDELLRKLAEL  169 (170)
T ss_pred             CEEEEecCCC--CCHHHHHHHHHhh
Confidence            4899999999  9999999988654

The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.

>cd00881 GTP_translation_factor GTP translation factor family

Probab=98.67  E-value=2.5e-07  Score=79.41  Aligned_cols=95  Identities=14%  Similarity=0.117  Sum_probs=67.4

Q ss_pred             HHHHHHhhccCEEEEEEcCCCCCCCcCHHHHHHHh-CCCCEEEEEEcccCCCccchHHHH----HHHHhhcC--------
Q psy15351          6 KDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQ-NIRPMVLVLNKRDLINSKHESLIE----EKVRKEQS--------   72 (352)
Q Consensus         6 ~~~~~~i~~aD~vl~VvDar~p~~~~~~~l~~~l~-~~k~~ilVlNK~Dl~~~~~~~~~~----~~~~~~~~--------   72 (352)
                      ......+..+|.+++|+|+..+.......+...+. .++|+++|+||+|+..++......    +.++..+.        
T Consensus        77 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (189)
T cd00881          77 SEVIRGLSVSDGAILVVDANEGVQPQTREHLRIAREGGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFISTKEEGT  156 (189)
T ss_pred             HHHHHHHHhcCEEEEEEECCCCCcHHHHHHHHHHHHCCCCeEEEEECCCCcchhcHHHHHHHHHHHHccccccchhhhhc
Confidence            44566788999999999999876554444444443 589999999999998754433222    23322121        


Q ss_pred             ---CCCcEEEeecCCCCCCCHHHHHHHHHHHhh
Q psy15351         73 ---HISEVIFTNCRNPNCKGVQKILPTLQHISD  102 (352)
Q Consensus        73 ---~~~~v~~iSa~~~~~~gi~~L~~~i~~~~~  102 (352)
                         ...+++.+||+++  .|++++++++.+.++
T Consensus       157 ~~~~~~~v~~~Sa~~g--~gi~~l~~~l~~~l~  187 (189)
T cd00881         157 RNGLLVPIVPGSALTG--IGVEELLEAIVEHLP  187 (189)
T ss_pred             ccCCcceEEEEecccC--cCHHHHHHHHHhhCC
Confidence               1236899999999  999999999887664

This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.

>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain

Probab=98.66  E-value=1e-07  Score=84.91  Aligned_cols=69  Identities=19%  Similarity=0.144  Sum_probs=48.8

Q ss_pred             cceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEec---CCCcEEEEeCCCCCCCCCCC
Q psy15351        167 YNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKIS---EKPLIYILDTPGISLPRIDN  238 (352)
Q Consensus       167 ~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~---~~~~~~l~DtPGi~~~~~~~  238 (352)
                      +-..|+++|.+++|||+|+|.|.+..   ..-......+.||+...-+....   .+..+.++||||+..+....
T Consensus         6 ~v~vvsv~G~~~sGKS~llN~l~~~~---~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~   77 (224)
T cd01851           6 PVAVVSVFGPQSSGKSFLLNHLFGTL---SGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGE   77 (224)
T ss_pred             CEEEEEEECCCCCCHHHHHHHHhCCC---CCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCccccCc
Confidence            44679999999999999999999731   12333445578888765332222   23579999999999875544

Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein

>cd01850 CDC_Septin CDC/Septin

Probab=98.65  E-value=6.9e-08  Score=88.80  Aligned_cols=68  Identities=24%  Similarity=0.330  Sum_probs=40.3

Q ss_pred             cceEEEEeCCCCCChHHHHHHHhCCCCCCCCce---ecCCCCCceeEeeeeEEec-CC--CcEEEEeCCCCCCC
Q psy15351        167 YNTTVMVVGVPNVGKSSIINALRSSHMKKGKAV---PVGPKAGVTRSVMSQVKIS-EK--PLIYILDTPGISLP  234 (352)
Q Consensus       167 ~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~---~~~~~pg~T~~~~~~~~~~-~~--~~~~l~DtPGi~~~  234 (352)
                      -.++|+++|.+|+|||||+|+|++..+......   .....+.|+.-......+. .+  -++.++||||+.+.
T Consensus         3 ~~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~   76 (276)
T cd01850           3 FQFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDN   76 (276)
T ss_pred             cEEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCcccc
Confidence            458999999999999999999997432211000   0011233332111112222 22  15899999999875

Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.

>PRK12299 obgE GTPase CgtA; Reviewed

Probab=98.65  E-value=1.5e-07  Score=88.68  Aligned_cols=93  Identities=17%  Similarity=0.315  Sum_probs=63.9

Q ss_pred             HHHHHHhhccCEEEEEEcCCCCCCCcC-HHHHHHHh------CCCCEEEEEEcccCCCccchH-HHHH-HHHhhcCCCCc
Q psy15351          6 KDIEKHLKNVDIVIEVHDSRMPFTGRN-HLLQQSVQ------NIRPMVLVLNKRDLINSKHES-LIEE-KVRKEQSHISE   76 (352)
Q Consensus         6 ~~~~~~i~~aD~vl~VvDar~p~~~~~-~~l~~~l~------~~k~~ilVlNK~Dl~~~~~~~-~~~~-~~~~~~~~~~~   76 (352)
                      .+++++++++|++++|+|+.++.+..+ ..+...+.      ..+|+++|+||+|+.+..... ...+ ++...+.   +
T Consensus       228 ~~flrhie~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~~~~~~~~~~~~~~---~  304 (335)
T PRK12299        228 HRFLKHIERTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEEREKRAALELAALGG---P  304 (335)
T ss_pred             HHHHHHhhhcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhHHHHHHHHHHHhcCC---C
Confidence            367788999999999999986532111 11212121      368999999999998654322 2222 2223334   4


Q ss_pred             EEEeecCCCCCCCHHHHHHHHHHHhhh
Q psy15351         77 VIFTNCRNPNCKGVQKILPTLQHISDN  103 (352)
Q Consensus        77 v~~iSa~~~~~~gi~~L~~~i~~~~~~  103 (352)
                      ++++||+++  +|+++|+++|.+.+++
T Consensus       305 i~~iSAktg--~GI~eL~~~L~~~l~~  329 (335)
T PRK12299        305 VFLISAVTG--EGLDELLRALWELLEE  329 (335)
T ss_pred             EEEEEcCCC--CCHHHHHHHHHHHHHh
Confidence            999999999  9999999999887764

>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence

Probab=98.64  E-value=4.3e-08  Score=92.60  Aligned_cols=72  Identities=31%  Similarity=0.362  Sum_probs=44.0

Q ss_pred             cceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCCcEEEEeCCCCCCCCCCCHH
Q psy15351        167 YNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE  240 (352)
Q Consensus       167 ~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~~~~~~~~~  240 (352)
                      .+++|+|+|.+|+|||||||+|+|-.-.....+.+|.. .||..+. .+.-...+++.++|.||++.+.+...+
T Consensus        34 ~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~-etT~~~~-~Y~~p~~pnv~lWDlPG~gt~~f~~~~  105 (376)
T PF05049_consen   34 APLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVV-ETTMEPT-PYPHPKFPNVTLWDLPGIGTPNFPPEE  105 (376)
T ss_dssp             --EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSH-SCCTS-E-EEE-SS-TTEEEEEE--GGGSS--HHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCC-cCCCCCe-eCCCCCCCCCeEEeCCCCCCCCCCHHH
Confidence            46899999999999999999998753333344555543 4555543 444455568999999999988664443

IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.

>TIGR03156 GTP_HflX GTP-binding protein HflX

Probab=98.64  E-value=1.3e-07  Score=89.84  Aligned_cols=89  Identities=17%  Similarity=0.357  Sum_probs=62.9

Q ss_pred             hHHHHHHHHhhccCEEEEEEcCCCCCCCcCH-HHHHHHh----CCCCEEEEEEcccCCCccchHHHHHHHHhhcCCCCcE
Q psy15351          3 RGLKDIEKHLKNVDIVIEVHDSRMPFTGRNH-LLQQSVQ----NIRPMVLVLNKRDLINSKHESLIEEKVRKEQSHISEV   77 (352)
Q Consensus         3 ~~~~~~~~~i~~aD~vl~VvDar~p~~~~~~-~l~~~l~----~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~v   77 (352)
                      .+++.+++.+.+||++++|+|+++|...... .+..+++    .++|+++|+||+|+.+.....    .+.....   ++
T Consensus       257 e~f~~tle~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~~~~~v~----~~~~~~~---~~  329 (351)
T TIGR03156       257 AAFRATLEEVREADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLLDEPRIE----RLEEGYP---EA  329 (351)
T ss_pred             HHHHHHHHHHHhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCCChHhHH----HHHhCCC---CE
Confidence            4566777889999999999999987643221 1223332    378999999999998653322    1112122   48


Q ss_pred             EEeecCCCCCCCHHHHHHHHHHH
Q psy15351         78 IFTNCRNPNCKGVQKILPTLQHI  100 (352)
Q Consensus        78 ~~iSa~~~~~~gi~~L~~~i~~~  100 (352)
                      +++||+++  .|+++|+++|.+.
T Consensus       330 i~iSAktg--~GI~eL~~~I~~~  350 (351)
T TIGR03156       330 VFVSAKTG--EGLDLLLEAIAER  350 (351)
T ss_pred             EEEEccCC--CCHHHHHHHHHhh
Confidence            99999999  9999999988653

This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).

>cd04171 SelB SelB subfamily

Probab=98.63  E-value=7.7e-08  Score=80.66  Aligned_cols=60  Identities=22%  Similarity=0.256  Sum_probs=39.9

Q ss_pred             eEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecC-CCcEEEEeCCCC
Q psy15351        169 TTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISE-KPLIYILDTPGI  231 (352)
Q Consensus       169 ~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~-~~~~~l~DtPGi  231 (352)
                      +.|+++|.||||||||+|+|++...   ........+++|.+......... +..+.++||||.
T Consensus         1 ~~i~i~G~~~~GKssl~~~l~~~~~---~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~   61 (164)
T cd04171           1 MIIGTAGHIDHGKTTLIKALTGIET---DRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGH   61 (164)
T ss_pred             CEEEEEecCCCCHHHHHHHHhCccc---ccchhhhccCceEEeeeEEEEecCCcEEEEEECCCh
Confidence            3689999999999999999986211   11112234677766543222222 457899999996

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo

>PRK12296 obgE GTPase CgtA; Reviewed

Probab=98.63  E-value=2.2e-07  Score=91.31  Aligned_cols=93  Identities=17%  Similarity=0.313  Sum_probs=65.6

Q ss_pred             HHHHHhhccCEEEEEEcCCC------CCCCcC---HHHHHHH----------h-CCCCEEEEEEcccCCCccchHHH-HH
Q psy15351          7 DIEKHLKNVDIVIEVHDSRM------PFTGRN---HLLQQSV----------Q-NIRPMVLVLNKRDLINSKHESLI-EE   65 (352)
Q Consensus         7 ~~~~~i~~aD~vl~VvDar~------p~~~~~---~~l~~~l----------~-~~k~~ilVlNK~Dl~~~~~~~~~-~~   65 (352)
                      +++++++++|++|+|+|+..      |+....   .++..+.          . ..+|+++|+||+|+.+.....++ .+
T Consensus       229 ~fLrhieradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el~e~l~~  308 (500)
T PRK12296        229 DFLRHIERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDARELAEFVRP  308 (500)
T ss_pred             HHHHHHHhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHHHHHHHHH
Confidence            46778999999999999964      222211   1233332          1 36899999999999755433222 33


Q ss_pred             HHHhhcCCCCcEEEeecCCCCCCCHHHHHHHHHHHhhhc
Q psy15351         66 KVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNM  104 (352)
Q Consensus        66 ~~~~~~~~~~~v~~iSa~~~~~~gi~~L~~~i~~~~~~~  104 (352)
                      .+.+.+..   ++.+||+++  +|+++|+.+|.++++..
T Consensus       309 ~l~~~g~~---Vf~ISA~tg--eGLdEL~~~L~ell~~~  342 (500)
T PRK12296        309 ELEARGWP---VFEVSAASR--EGLRELSFALAELVEEA  342 (500)
T ss_pred             HHHHcCCe---EEEEECCCC--CCHHHHHHHHHHHHHhh
Confidence            44444554   999999999  99999999998887654

>cd04163 Era Era subfamily

Probab=98.62  E-value=3.8e-07  Score=76.15  Aligned_cols=91  Identities=23%  Similarity=0.352  Sum_probs=68.6

Q ss_pred             HHHHHhhccCEEEEEEcCCCCCCCcCHHHHHHHh-CCCCEEEEEEcccCCC-ccchHHHHHHHHhhcCCCCcEEEeecCC
Q psy15351          7 DIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQ-NIRPMVLVLNKRDLIN-SKHESLIEEKVRKEQSHISEVIFTNCRN   84 (352)
Q Consensus         7 ~~~~~i~~aD~vl~VvDar~p~~~~~~~l~~~l~-~~k~~ilVlNK~Dl~~-~~~~~~~~~~~~~~~~~~~~v~~iSa~~   84 (352)
                      .....+..+|++++|+|++++.......+.+.+. .+.|.++|+||+|+.. .....++.+.+.... ...+++.+|+++
T Consensus        75 ~~~~~~~~~d~i~~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~  153 (168)
T cd04163          75 AAWSALKDVDLVLFVVDASEPIGEGDEFILELLKKSKTPVILVLNKIDLVKDKEDLLPLLEKLKELG-PFAEIFPISALK  153 (168)
T ss_pred             HHHHHHHhCCEEEEEEECCCccCchHHHHHHHHHHhCCCEEEEEEchhccccHHHHHHHHHHHHhcc-CCCceEEEEecc
Confidence            3456789999999999999886555555555554 4589999999999983 444566666665543 123689999999


Q ss_pred             CCCCCHHHHHHHHHHH
Q psy15351         85 PNCKGVQKILPTLQHI  100 (352)
Q Consensus        85 ~~~~gi~~L~~~i~~~  100 (352)
                      +  .|++++++.|.+.
T Consensus       154 ~--~~~~~l~~~l~~~  167 (168)
T cd04163         154 G--ENVDELLEEIVKY  167 (168)
T ss_pred             C--CChHHHHHHHHhh
Confidence            9  9999999988754

Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.

>cd01878 HflX HflX subfamily

Probab=98.62  E-value=2.2e-07  Score=81.41  Aligned_cols=89  Identities=19%  Similarity=0.442  Sum_probs=62.5

Q ss_pred             HHHHHHHHhhccCEEEEEEcCCCCCCCcCH-HHHHHHh----CCCCEEEEEEcccCCCccchHHHHHHHHhhcCCCCcEE
Q psy15351          4 GLKDIEKHLKNVDIVIEVHDSRMPFTGRNH-LLQQSVQ----NIRPMVLVLNKRDLINSKHESLIEEKVRKEQSHISEVI   78 (352)
Q Consensus         4 ~~~~~~~~i~~aD~vl~VvDar~p~~~~~~-~l~~~l~----~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~v~   78 (352)
                      +++.+...+..+|++++|+|++++....+. .+.+++.    .++|+++|+||+|+.+.....   ..+...+.   +++
T Consensus       110 ~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~~~~~~~---~~~~~~~~---~~~  183 (204)
T cd01878         110 AFRSTLEEVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLDDEELE---ERLEAGRP---DAV  183 (204)
T ss_pred             HHHHHHHHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccCChHHHH---HHhhcCCC---ceE
Confidence            344555567899999999999987654332 2223332    368999999999998765332   22322233   489


Q ss_pred             EeecCCCCCCCHHHHHHHHHHH
Q psy15351         79 FTNCRNPNCKGVQKILPTLQHI  100 (352)
Q Consensus        79 ~iSa~~~~~~gi~~L~~~i~~~  100 (352)
                      .+||+++  .|+++++++|.+.
T Consensus       184 ~~Sa~~~--~gi~~l~~~L~~~  203 (204)
T cd01878         184 FISAKTG--EGLDELLEAIEEL  203 (204)
T ss_pred             EEEcCCC--CCHHHHHHHHHhh
Confidence            9999999  9999999988653

A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.

>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes

Probab=98.60  E-value=3e-07  Score=76.30  Aligned_cols=86  Identities=16%  Similarity=0.290  Sum_probs=64.8

Q ss_pred             HHHHHHHhhccCEEEEEEcCCCCCCCcCHHHHHHHhCCCCEEEEEEcccCCCccchHHHHHHHHhhcCCCCcEEEeecCC
Q psy15351          5 LKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHESLIEEKVRKEQSHISEVIFTNCRN   84 (352)
Q Consensus         5 ~~~~~~~i~~aD~vl~VvDar~p~~~~~~~l~~~l~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~v~~iSa~~   84 (352)
                      +++++..+.++|++++|+|++.+....+..+.... .++|+++|+||+|+.+....     .....+.   +++.+||++
T Consensus        71 ~~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~-~~~~vi~v~nK~D~~~~~~~-----~~~~~~~---~~~~~Sa~~  141 (157)
T cd04164          71 IERAREAIEEADLVLFVIDASRGLDEEDLEILELP-ADKPIIVVLNKSDLLPDSEL-----LSLLAGK---PIIAISAKT  141 (157)
T ss_pred             HHHHHHHHhhCCEEEEEEECCCCCCHHHHHHHHhh-cCCCEEEEEEchhcCCcccc-----ccccCCC---ceEEEECCC
Confidence            45567788899999999999987665554444332 57999999999999876533     1112233   499999999


Q ss_pred             CCCCCHHHHHHHHHHHh
Q psy15351         85 PNCKGVQKILPTLQHIS  101 (352)
Q Consensus        85 ~~~~gi~~L~~~i~~~~  101 (352)
                      +  .|+++|+++|.+.+
T Consensus       142 ~--~~v~~l~~~l~~~~  156 (157)
T cd04164         142 G--EGLDELKEALLELA  156 (157)
T ss_pred             C--CCHHHHHHHHHHhh
Confidence            9  99999999987653

It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.

>TIGR00231 small_GTP small GTP-binding protein domain

Probab=98.59  E-value=1.5e-07  Score=77.66  Aligned_cols=58  Identities=34%  Similarity=0.490  Sum_probs=44.1

Q ss_pred             eEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCC--CcEEEEeCCCCC
Q psy15351        169 TTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEK--PLIYILDTPGIS  232 (352)
Q Consensus       169 ~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~--~~~~l~DtPGi~  232 (352)
                      ++|+++|.+|+|||||+|++.+     .. ...+..|++|++........++  ..+.++||||..
T Consensus         2 ~ki~~~G~~~~GKstl~~~l~~-----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~   61 (161)
T TIGR00231         2 IKIVIVGDPNVGKSTLLNRLLG-----NK-FITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQE   61 (161)
T ss_pred             eEEEEECCCCCCHHHHHHHHhC-----CC-CcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcc
Confidence            6899999999999999999996     23 5667778888876543233333  357889999954

This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.

>cd01884 EF_Tu EF-Tu subfamily

Probab=98.58  E-value=5.3e-07  Score=78.63  Aligned_cols=86  Identities=14%  Similarity=0.056  Sum_probs=60.1

Q ss_pred             hHHHHHHHHhhccCEEEEEEcCCCCCCCcCHHHHHHHh-CCCC-EEEEEEcccCCCccch-----HHHHHHHHhhcCC--
Q psy15351          3 RGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQ-NIRP-MVLVLNKRDLINSKHE-----SLIEEKVRKEQSH--   73 (352)
Q Consensus         3 ~~~~~~~~~i~~aD~vl~VvDar~p~~~~~~~l~~~l~-~~k~-~ilVlNK~Dl~~~~~~-----~~~~~~~~~~~~~--   73 (352)
                      +.+..+...+..+|++++|+|+..+.......+..++. .+.| +++++||+|+++.+..     ++..+++++.+++  
T Consensus        77 ~~~~~~~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~g~~~~  156 (195)
T cd01884          77 DYIKNMITGAAQMDGAILVVSATDGPMPQTREHLLLARQVGVPYIVVFLNKADMVDDEELLELVEMEVRELLSKYGFDGD  156 (195)
T ss_pred             HHHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHhccccc
Confidence            45677888999999999999999877665555555554 5666 6789999999854332     2233444444432  


Q ss_pred             CCcEEEeecCCCCCCCH
Q psy15351         74 ISEVIFTNCRNPNCKGV   90 (352)
Q Consensus        74 ~~~v~~iSa~~~~~~gi   90 (352)
                      ..+++++||.++  .+.
T Consensus       157 ~v~iipiSa~~g--~n~  171 (195)
T cd01884         157 NTPIVRGSALKA--LEG  171 (195)
T ss_pred             CCeEEEeeCccc--cCC
Confidence            236999999998  663

This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>cd04104 p47_IIGP_like p47 (47-kDa) family

Probab=98.58  E-value=1.7e-07  Score=81.90  Aligned_cols=66  Identities=30%  Similarity=0.381  Sum_probs=40.9

Q ss_pred             ceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCCcEEEEeCCCCCCCC
Q psy15351        168 NTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPR  235 (352)
Q Consensus       168 ~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~~~~  235 (352)
                      +++|+++|.+|||||||+|+|++........+.++ ...+|+... .+.......+.++||||+....
T Consensus         1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~-~~~~t~~~~-~~~~~~~~~l~l~DtpG~~~~~   66 (197)
T cd04104           1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTG-VVETTMKRT-PYPHPKFPNVTLWDLPGIGSTA   66 (197)
T ss_pred             CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccC-ccccccCce-eeecCCCCCceEEeCCCCCccc
Confidence            36899999999999999999997321111111222 122343322 2222223468999999998754

The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei

>PRK12298 obgE GTPase CgtA; Reviewed

Probab=98.57  E-value=3.1e-07  Score=88.37  Aligned_cols=97  Identities=15%  Similarity=0.199  Sum_probs=66.0

Q ss_pred             HHHHHHhhccCEEEEEEcCCCC----CCCcCHHHHHHHh------CCCCEEEEEEcccCCCccchHHHHHHHHhh-cCCC
Q psy15351          6 KDIEKHLKNVDIVIEVHDSRMP----FTGRNHLLQQSVQ------NIRPMVLVLNKRDLINSKHESLIEEKVRKE-QSHI   74 (352)
Q Consensus         6 ~~~~~~i~~aD~vl~VvDar~p----~~~~~~~l~~~l~------~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~-~~~~   74 (352)
                      .++.++++++|++++|+|++..    .......+.+.+.      ..+|.++|+||+|+.+.....+.++.+.+. +. .
T Consensus       229 ~~~l~~i~radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~el~~~l~~l~~~~~~-~  307 (390)
T PRK12298        229 IRFLKHLERCRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEEEAEERAKAIVEALGW-E  307 (390)
T ss_pred             HHHHHHHHhCCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChHHHHHHHHHHHHHhCC-C
Confidence            4567789999999999998721    0000112222221      258999999999998765444444444332 21 0


Q ss_pred             CcEEEeecCCCCCCCHHHHHHHHHHHhhhcc
Q psy15351         75 SEVIFTNCRNPNCKGVQKILPTLQHISDNMT  105 (352)
Q Consensus        75 ~~v~~iSa~~~~~~gi~~L~~~i~~~~~~~~  105 (352)
                      .+++++||+++  .|+++|++.|.+.+++.+
T Consensus       308 ~~Vi~ISA~tg--~GIdeLl~~I~~~L~~~~  336 (390)
T PRK12298        308 GPVYLISAASG--LGVKELCWDLMTFIEENP  336 (390)
T ss_pred             CCEEEEECCCC--cCHHHHHHHHHHHhhhCc
Confidence            14899999999  999999999999887654

>TIGR00437 feoB ferrous iron transporter FeoB

Probab=98.57  E-value=1.1e-07  Score=96.18  Aligned_cols=55  Identities=38%  Similarity=0.393  Sum_probs=44.8

Q ss_pred             CCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCCcEEEEeCCCCCCCC
Q psy15351        175 GVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPR  235 (352)
Q Consensus       175 G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~~~~  235 (352)
                      |.||||||||+|+|++      ....+++.||+|.+........++.++.++||||.....
T Consensus         1 G~pNvGKSSL~N~Ltg------~~~~v~n~pG~Tv~~~~~~i~~~~~~i~lvDtPG~~~~~   55 (591)
T TIGR00437         1 GNPNVGKSTLFNALTG------ANQTVGNWPGVTVEKKEGKLGFQGEDIEIVDLPGIYSLT   55 (591)
T ss_pred             CCCCCCHHHHHHHHhC------CCCeecCCCCeEEEEEEEEEEECCeEEEEEECCCccccC
Confidence            8999999999999996      345789999999987654444455679999999998753

FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.

>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional

Probab=98.54  E-value=6.7e-07  Score=87.62  Aligned_cols=99  Identities=10%  Similarity=0.090  Sum_probs=68.1

Q ss_pred             hHHHHHHHHhhccCEEEEEEcCCCC-CCCcCHHHHHHHh--CCCCEEEEEEcccCCCccchHHHHHHHHh----hcCCCC
Q psy15351          3 RGLKDIEKHLKNVDIVIEVHDSRMP-FTGRNHLLQQSVQ--NIRPMVLVLNKRDLINSKHESLIEEKVRK----EQSHIS   75 (352)
Q Consensus         3 ~~~~~~~~~i~~aD~vl~VvDar~p-~~~~~~~l~~~l~--~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~----~~~~~~   75 (352)
                      +.++.+...+..+|++++|+|+..+ ......+....+.  ..+++++|+||+|+++.+...+..+.+++    ......
T Consensus       129 ~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~~~lgi~~iIVvlNKiDlv~~~~~~~~~~ei~~~l~~~~~~~~  208 (460)
T PTZ00327        129 ILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAVEIMKLKHIIILQNKIDLVKEAQAQDQYEEIRNFVKGTIADNA  208 (460)
T ss_pred             HHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHHHHcCCCcEEEEEecccccCHHHHHHHHHHHHHHHHhhccCCC
Confidence            4578888999999999999999975 3332222222222  34578899999999875543333333322    111223


Q ss_pred             cEEEeecCCCCCCCHHHHHHHHHHHhhh
Q psy15351         76 EVIFTNCRNPNCKGVQKILPTLQHISDN  103 (352)
Q Consensus        76 ~v~~iSa~~~~~~gi~~L~~~i~~~~~~  103 (352)
                      +++++||.++  .|++.|++.|.+.++.
T Consensus       209 ~iipVSA~~G--~nI~~Ll~~L~~~lp~  234 (460)
T PTZ00327        209 PIIPISAQLK--YNIDVVLEYICTQIPI  234 (460)
T ss_pred             eEEEeeCCCC--CCHHHHHHHHHhhCCC
Confidence            6999999999  9999999999876654

>cd00880 Era_like Era (E

Probab=98.51  E-value=1.1e-06  Score=72.44  Aligned_cols=93  Identities=20%  Similarity=0.218  Sum_probs=66.2

Q ss_pred             HHHHHHhhccCEEEEEEcCCCCCCCcCHHHHHHH-hCCCCEEEEEEcccCCCccchHHHHHHH--HhhcCCCCcEEEeec
Q psy15351          6 KDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSV-QNIRPMVLVLNKRDLINSKHESLIEEKV--RKEQSHISEVIFTNC   82 (352)
Q Consensus         6 ~~~~~~i~~aD~vl~VvDar~p~~~~~~~l~~~l-~~~k~~ilVlNK~Dl~~~~~~~~~~~~~--~~~~~~~~~v~~iSa   82 (352)
                      ..+...+..+|++++|+|+..+.......+.... ..+.|+++|+||+|+........+.+..  ........+++.+||
T Consensus        67 ~~~~~~~~~~d~il~v~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa  146 (163)
T cd00880          67 ELARRVLERADLILFVVDADLRADEEEEKLLELLRERGKPVLLVLNKIDLLPEEEEEELLELRLLILLLLLGLPVIAVSA  146 (163)
T ss_pred             HHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCeEEEEEEccccCChhhHHHHHHHHHhhcccccCCceEEEee
Confidence            4566788999999999999987665554422222 2689999999999999876655553211  111112235999999


Q ss_pred             CCCCCCCHHHHHHHHHHH
Q psy15351         83 RNPNCKGVQKILPTLQHI  100 (352)
Q Consensus        83 ~~~~~~gi~~L~~~i~~~  100 (352)
                      .++  .|++++++++.+.
T Consensus       147 ~~~--~~v~~l~~~l~~~  162 (163)
T cd00880         147 LTG--EGIDELREALIEA  162 (163)
T ss_pred             ecc--CCHHHHHHHHHhh
Confidence            999  9999999988654

coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se

>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional

Probab=98.51  E-value=7.6e-07  Score=90.50  Aligned_cols=99  Identities=12%  Similarity=0.184  Sum_probs=72.2

Q ss_pred             hHHHHHHHHhhccCEEEEEEcCCCCCCCcCHHHHHHHh-CCCC-EEEEEEcccCCCccchH----HHHHHHHhhcCCCCc
Q psy15351          3 RGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQ-NIRP-MVLVLNKRDLINSKHES----LIEEKVRKEQSHISE   76 (352)
Q Consensus         3 ~~~~~~~~~i~~aD~vl~VvDar~p~~~~~~~l~~~l~-~~k~-~ilVlNK~Dl~~~~~~~----~~~~~~~~~~~~~~~   76 (352)
                      +.++.+...+..+|++++|+|++.++.....+...++. .+.| +++|+||+|+++++...    ++.+++...+....+
T Consensus        63 ~fi~~m~~g~~~~D~~lLVVda~eg~~~qT~ehl~il~~lgi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~~~~  142 (614)
T PRK10512         63 KFLSNMLAGVGGIDHALLVVACDDGVMAQTREHLAILQLTGNPMLTVALTKADRVDEARIAEVRRQVKAVLREYGFAEAK  142 (614)
T ss_pred             HHHHHHHHHhhcCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCCCCc
Confidence            45677888899999999999999877665555555554 4556 57999999998754432    333344333432236


Q ss_pred             EEEeecCCCCCCCHHHHHHHHHHHhhh
Q psy15351         77 VIFTNCRNPNCKGVQKILPTLQHISDN  103 (352)
Q Consensus        77 v~~iSa~~~~~~gi~~L~~~i~~~~~~  103 (352)
                      ++++||+++  .|+++|+++|.++...
T Consensus       143 ii~VSA~tG--~gI~~L~~~L~~~~~~  167 (614)
T PRK10512        143 LFVTAATEG--RGIDALREHLLQLPER  167 (614)
T ss_pred             EEEEeCCCC--CCCHHHHHHHHHhhcc
Confidence            999999999  9999999999876554

>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily

Probab=98.50  E-value=2.6e-07  Score=77.86  Aligned_cols=57  Identities=28%  Similarity=0.492  Sum_probs=39.8

Q ss_pred             EEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEec---CCCcEEEEeCCCCC
Q psy15351        170 TVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKIS---EKPLIYILDTPGIS  232 (352)
Q Consensus       170 ~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~---~~~~~~l~DtPGi~  232 (352)
                      .|+++|.+|+|||||+|+|.+.      .......+++|.+........   .+..+.++||||..
T Consensus         2 ~i~iiG~~~~GKtsli~~l~~~------~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~   61 (168)
T cd01887           2 VVTVMGHVDHGKTTLLDKIRKT------NVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHE   61 (168)
T ss_pred             EEEEEecCCCCHHHHHHHHHhc------ccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcH
Confidence            4899999999999999999862      223335567776653222222   24578999999974

IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.

>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily

Probab=98.49  E-value=1.1e-06  Score=73.16  Aligned_cols=82  Identities=18%  Similarity=0.236  Sum_probs=58.6

Q ss_pred             hccCEEEEEEcCCCCCCCcCHHHHHHHh-CCCCEEEEEEcccCCCccchHHHHHHHHh-hcCCCCcEEEeecCCCCCCCH
Q psy15351         13 KNVDIVIEVHDSRMPFTGRNHLLQQSVQ-NIRPMVLVLNKRDLINSKHESLIEEKVRK-EQSHISEVIFTNCRNPNCKGV   90 (352)
Q Consensus        13 ~~aD~vl~VvDar~p~~~~~~~l~~~l~-~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~-~~~~~~~v~~iSa~~~~~~gi   90 (352)
                      +.+|++++|+|++.+..  ...+...+. .++|+++|+||+|+.+......+.+.+.+ .+.+   ++.+||.++  .|+
T Consensus        73 ~~~d~vi~v~d~~~~~~--~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~---~~~iSa~~~--~~~  145 (158)
T cd01879          73 EKPDLIVNVVDATNLER--NLYLTLQLLELGLPVVVALNMIDEAEKRGIKIDLDKLSELLGVP---VVPTSARKG--EGI  145 (158)
T ss_pred             CCCcEEEEEeeCCcchh--HHHHHHHHHHcCCCEEEEEehhhhcccccchhhHHHHHHhhCCC---eEEEEccCC--CCH
Confidence            59999999999987532  222322222 67999999999999876543333334433 3554   999999999  999


Q ss_pred             HHHHHHHHHHh
Q psy15351         91 QKILPTLQHIS  101 (352)
Q Consensus        91 ~~L~~~i~~~~  101 (352)
                      +++++++.+..
T Consensus       146 ~~l~~~l~~~~  156 (158)
T cd01879         146 DELKDAIAELA  156 (158)
T ss_pred             HHHHHHHHHHh
Confidence            99998887653

E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.

>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans

Probab=98.47  E-value=1.4e-06  Score=73.58  Aligned_cols=82  Identities=23%  Similarity=0.250  Sum_probs=55.3

Q ss_pred             ccCEEEEEEcCCCCCCCcCH---HHHHHHh---CCCCEEEEEEcccCCCccchHHHHHHHHhhcCCCCcEEEeecCCCCC
Q psy15351         14 NVDIVIEVHDSRMPFTGRNH---LLQQSVQ---NIRPMVLVLNKRDLINSKHESLIEEKVRKEQSHISEVIFTNCRNPNC   87 (352)
Q Consensus        14 ~aD~vl~VvDar~p~~~~~~---~l~~~l~---~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~v~~iSa~~~~~   87 (352)
                      .+|++++|+|++++......   .+...++   .+.|+++|+||+|+..........++......   +++.+||+++  
T Consensus        79 ~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~---~~~~~Sa~~~--  153 (168)
T cd01897          79 LRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLFKNKPVIVVLNKIDLLTFEDLSEIEEEEELEGE---EVLKISTLTE--  153 (168)
T ss_pred             ccCcEEEEEeCCcccccchHHHHHHHHHHHhhcCcCCeEEEEEccccCchhhHHHHHHhhhhccC---ceEEEEeccc--
Confidence            36899999999876432111   2222232   37899999999999876543332222222233   4899999999  


Q ss_pred             CCHHHHHHHHHHH
Q psy15351         88 KGVQKILPTLQHI  100 (352)
Q Consensus        88 ~gi~~L~~~i~~~  100 (352)
                      .|++++++++.+.
T Consensus       154 ~gi~~l~~~l~~~  166 (168)
T cd01897         154 EGVDEVKNKACEL  166 (168)
T ss_pred             CCHHHHHHHHHHH
Confidence            9999999988754

NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.

>cd01861 Rab6 Rab6 subfamily

Probab=98.47  E-value=4.1e-07  Score=76.15  Aligned_cols=56  Identities=23%  Similarity=0.294  Sum_probs=38.1

Q ss_pred             EEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCC--cEEEEeCCCC
Q psy15351        170 TVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKP--LIYILDTPGI  231 (352)
Q Consensus       170 ~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~--~~~l~DtPGi  231 (352)
                      +|+++|.||||||||+|++.+.      ....+..|++|.+.........+.  .+.++||||-
T Consensus         2 ki~liG~~~~GKSsli~~l~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~   59 (161)
T cd01861           2 KLVFLGDQSVGKTSIITRFMYD------TFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQ   59 (161)
T ss_pred             EEEEECCCCCCHHHHHHHHHcC------CCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCc
Confidence            6999999999999999999863      223345566665543322112222  4789999994

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate

>cd04166 CysN_ATPS CysN_ATPS subfamily

Probab=98.47  E-value=1.2e-07  Score=83.53  Aligned_cols=63  Identities=24%  Similarity=0.312  Sum_probs=43.2

Q ss_pred             EEEEeCCCCCChHHHHHHHhCCC--CCCC-----------------------CceecCCCCCceeEeeeeEEecCCCcEE
Q psy15351        170 TVMVVGVPNVGKSSIINALRSSH--MKKG-----------------------KAVPVGPKAGVTRSVMSQVKISEKPLIY  224 (352)
Q Consensus       170 ~v~i~G~pnvGKStliN~l~~~~--~~~~-----------------------~~~~~~~~pg~T~~~~~~~~~~~~~~~~  224 (352)
                      +|+++|.+|+|||||+|+|+...  +...                       ........+|+|++.........+.++.
T Consensus         1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~   80 (208)
T cd04166           1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI   80 (208)
T ss_pred             CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence            48999999999999999997521  0000                       0001112388999887655555667899


Q ss_pred             EEeCCCCC
Q psy15351        225 ILDTPGIS  232 (352)
Q Consensus       225 l~DtPGi~  232 (352)
                      |+||||..
T Consensus        81 liDTpG~~   88 (208)
T cd04166          81 IADTPGHE   88 (208)
T ss_pred             EEECCcHH
Confidence            99999973

CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.

>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed

Probab=98.47  E-value=6e-07  Score=88.19  Aligned_cols=87  Identities=20%  Similarity=0.400  Sum_probs=65.0

Q ss_pred             HHHHHHHHhhccCEEEEEEcCCCCCCCcCHHHHHHHhCCCCEEEEEEcccCCCccchHHHHHHHHhhcCCCCcEEEeecC
Q psy15351          4 GLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHESLIEEKVRKEQSHISEVIFTNCR   83 (352)
Q Consensus         4 ~~~~~~~~i~~aD~vl~VvDar~p~~~~~~~l~~~l~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~v~~iSa~   83 (352)
                      ++++++..+..+|++++|+|+.++.+..+..+.... .++|+++|+||+|+.+.....      ...+.   +++.+||+
T Consensus       284 gi~~~~~~~~~aD~il~VvD~s~~~s~~~~~~l~~~-~~~piiiV~NK~DL~~~~~~~------~~~~~---~~i~iSAk  353 (449)
T PRK05291        284 GIERSREAIEEADLVLLVLDASEPLTEEDDEILEEL-KDKPVIVVLNKADLTGEIDLE------EENGK---PVIRISAK  353 (449)
T ss_pred             HHHHHHHHHHhCCEEEEEecCCCCCChhHHHHHHhc-CCCCcEEEEEhhhccccchhh------hccCC---ceEEEEee
Confidence            456778889999999999999887654432222211 578999999999997654321      12233   48999999


Q ss_pred             CCCCCCHHHHHHHHHHHhh
Q psy15351         84 NPNCKGVQKILPTLQHISD  102 (352)
Q Consensus        84 ~~~~~gi~~L~~~i~~~~~  102 (352)
                      ++  .|+++|++++.+.+.
T Consensus       354 tg--~GI~~L~~~L~~~l~  370 (449)
T PRK05291        354 TG--EGIDELREAIKELAF  370 (449)
T ss_pred             CC--CCHHHHHHHHHHHHh
Confidence            99  999999999987765

>cd00880 Era_like Era (E

Probab=98.47  E-value=3.1e-07  Score=75.71  Aligned_cols=59  Identities=32%  Similarity=0.385  Sum_probs=43.8

Q ss_pred             EeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecC-CCcEEEEeCCCCCCCCC
Q psy15351        173 VVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISE-KPLIYILDTPGISLPRI  236 (352)
Q Consensus       173 i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~-~~~~~l~DtPGi~~~~~  236 (352)
                      ++|.+|+|||||+|+|.+     ......+..+++|........... ...+.++||||+.....
T Consensus         1 i~G~~gsGKstl~~~l~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~   60 (163)
T cd00880           1 LFGRTNAGKSSLLNALLG-----QEVAIVSPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGG   60 (163)
T ss_pred             CcCCCCCCHHHHHHHHhC-----ccccccCCCCCcEECCeEEEEEecCCCcEEEEECCCCCcccc
Confidence            579999999999999997     334446778888877654332222 45799999999987643

coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se

>cd01876 YihA_EngB The YihA (EngB) subfamily

Probab=98.46  E-value=3.6e-07  Score=76.49  Aligned_cols=57  Identities=30%  Similarity=0.442  Sum_probs=44.4

Q ss_pred             EEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCCcEEEEeCCCCCCC
Q psy15351        171 VMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLP  234 (352)
Q Consensus       171 v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~~~  234 (352)
                      |+++|.+|+|||||+|+|.+.    ......++.+++|.... .+...  ..++++||||+...
T Consensus         2 i~l~G~~g~GKTtL~~~l~~~----~~~~~~~~~~~~t~~~~-~~~~~--~~~~~~D~~g~~~~   58 (170)
T cd01876           2 IAFAGRSNVGKSSLINALTNR----KKLARTSKTPGKTQLIN-FFNVN--DKFRLVDLPGYGYA   58 (170)
T ss_pred             EEEEcCCCCCHHHHHHHHhcC----CceeeecCCCCcceeEE-EEEcc--CeEEEecCCCcccc
Confidence            789999999999999999942    34566788888887753 33322  37999999998765

This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.

>PRK12297 obgE GTPase CgtA; Reviewed

Probab=98.46  E-value=8.9e-07  Score=85.82  Aligned_cols=92  Identities=17%  Similarity=0.293  Sum_probs=62.1

Q ss_pred             HHHHHHhhccCEEEEEEcCCCC-----CCCcCHHHHHHHh------CCCCEEEEEEcccCCCccchHHHHHHHHhhcCCC
Q psy15351          6 KDIEKHLKNVDIVIEVHDSRMP-----FTGRNHLLQQSVQ------NIRPMVLVLNKRDLINSKHESLIEEKVRKEQSHI   74 (352)
Q Consensus         6 ~~~~~~i~~aD~vl~VvDar~p-----~~~~~~~l~~~l~------~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~   74 (352)
                      .++.+.++++|++++|+|+...     +... ..+.+.+.      .++|.++|+||+||....  +.+.++.+..+.  
T Consensus       228 ~~fLrhier~~llI~VID~s~~~~~dp~e~~-~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~~--e~l~~l~~~l~~--  302 (424)
T PRK12297        228 HQFLRHIERTRVIVHVIDMSGSEGRDPIEDY-EKINKELKLYNPRLLERPQIVVANKMDLPEAE--ENLEEFKEKLGP--  302 (424)
T ss_pred             HHHHHHHhhCCEEEEEEeCCccccCChHHHH-HHHHHHHhhhchhccCCcEEEEEeCCCCcCCH--HHHHHHHHHhCC--
Confidence            4567789999999999999643     1111 11222221      368999999999984332  222222222233  


Q ss_pred             CcEEEeecCCCCCCCHHHHHHHHHHHhhhcc
Q psy15351         75 SEVIFTNCRNPNCKGVQKILPTLQHISDNMT  105 (352)
Q Consensus        75 ~~v~~iSa~~~~~~gi~~L~~~i~~~~~~~~  105 (352)
                       +++++||+++  +|+++|++++.+.+...+
T Consensus       303 -~i~~iSA~tg--eGI~eL~~~L~~~l~~~~  330 (424)
T PRK12297        303 -KVFPISALTG--QGLDELLYAVAELLEETP  330 (424)
T ss_pred             -cEEEEeCCCC--CCHHHHHHHHHHHHHhCc
Confidence             4999999999  999999999988876543

>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions

Probab=98.45  E-value=1.9e-07  Score=77.98  Aligned_cols=78  Identities=28%  Similarity=0.330  Sum_probs=55.2

Q ss_pred             hccCEEEEEEcCCCCCCCcCHHHH-HHHhCCCCEEEEEEcccCCCccchHHHHHHHH-hhcCCCCcEEEeecCCCCCCCH
Q psy15351         13 KNVDIVIEVHDSRMPFTGRNHLLQ-QSVQNIRPMVLVLNKRDLINSKHESLIEEKVR-KEQSHISEVIFTNCRNPNCKGV   90 (352)
Q Consensus        13 ~~aD~vl~VvDar~p~~~~~~~l~-~~l~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~-~~~~~~~~v~~iSa~~~~~~gi   90 (352)
                      ++.|+++.|+||+..  .++..+. +++..++|+++|+||+|++.+....--.+.+. ..+.+   ++++||+++  +|+
T Consensus        77 ~~~D~ii~VvDa~~l--~r~l~l~~ql~e~g~P~vvvlN~~D~a~~~g~~id~~~Ls~~Lg~p---vi~~sa~~~--~g~  149 (156)
T PF02421_consen   77 EKPDLIIVVVDATNL--ERNLYLTLQLLELGIPVVVVLNKMDEAERKGIEIDAEKLSERLGVP---VIPVSARTG--EGI  149 (156)
T ss_dssp             TSSSEEEEEEEGGGH--HHHHHHHHHHHHTTSSEEEEEETHHHHHHTTEEE-HHHHHHHHTS----EEEEBTTTT--BTH
T ss_pred             cCCCEEEEECCCCCH--HHHHHHHHHHHHcCCCEEEEEeCHHHHHHcCCEECHHHHHHHhCCC---EEEEEeCCC--cCH
Confidence            789999999999862  3343343 33337899999999999886653211122222 23665   999999999  999


Q ss_pred             HHHHHHH
Q psy15351         91 QKILPTL   97 (352)
Q Consensus        91 ~~L~~~i   97 (352)
                      ++|+++|
T Consensus       150 ~~L~~~I  156 (156)
T PF02421_consen  150 DELKDAI  156 (156)
T ss_dssp             HHHHHHH
T ss_pred             HHHHhhC
Confidence            9998865

FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....

>COG0218 Predicted GTPase [General function prediction only]

Probab=98.45  E-value=2.1e-06  Score=73.74  Aligned_cols=87  Identities=18%  Similarity=0.217  Sum_probs=66.8

Q ss_pred             ccCEEEEEEcCCCCCCCcCHHHHHHHh-CCCCEEEEEEcccCCCccchHHHHHHHHhh-cCC--CC-cEEEeecCCCCCC
Q psy15351         14 NVDIVIEVHDSRMPFTGRNHLLQQSVQ-NIRPMVLVLNKRDLINSKHESLIEEKVRKE-QSH--IS-EVIFTNCRNPNCK   88 (352)
Q Consensus        14 ~aD~vl~VvDar~p~~~~~~~l~~~l~-~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~-~~~--~~-~v~~iSa~~~~~~   88 (352)
                      +...+++|+|+|+++...+.++.+++. .+.|+++|+||+|.++.......+...++. ...  .. .++++|+.++  .
T Consensus       106 ~L~~vvlliD~r~~~~~~D~em~~~l~~~~i~~~vv~tK~DKi~~~~~~k~l~~v~~~l~~~~~~~~~~~~~ss~~k--~  183 (200)
T COG0218         106 NLKGVVLLIDARHPPKDLDREMIEFLLELGIPVIVVLTKADKLKKSERNKQLNKVAEELKKPPPDDQWVVLFSSLKK--K  183 (200)
T ss_pred             hheEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEccccCChhHHHHHHHHHHHHhcCCCCccceEEEEecccc--c
Confidence            456899999999999988888888887 789999999999999876544434444321 211  11 2788899999  9


Q ss_pred             CHHHHHHHHHHHhh
Q psy15351         89 GVQKILPTLQHISD  102 (352)
Q Consensus        89 gi~~L~~~i~~~~~  102 (352)
                      |++++.+.|.+.+.
T Consensus       184 Gi~~l~~~i~~~~~  197 (200)
T COG0218         184 GIDELKAKILEWLK  197 (200)
T ss_pred             CHHHHHHHHHHHhh
Confidence            99999999887654

>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]

Probab=98.43  E-value=1.3e-06  Score=68.69  Aligned_cols=85  Identities=20%  Similarity=0.319  Sum_probs=71.7

Q ss_pred             HHHHhhccCEEEEEEcCCCCCCCcCHHHHHHHhCCCCEEEEEEcccCCCccchHHHHHHHHhhcCCCCcEEEeecCCCCC
Q psy15351          8 IEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHESLIEEKVRKEQSHISEVIFTNCRNPNC   87 (352)
Q Consensus         8 ~~~~i~~aD~vl~VvDar~p~~~~~~~l~~~l~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~v~~iSa~~~~~   87 (352)
                      +.-...++|++++|..+.+|.+...+-+...  ..+|+|-|++|+||.....++...+++.+.|..  +|+.+|+.++  
T Consensus        58 L~tt~~dadvi~~v~~and~~s~f~p~f~~~--~~k~vIgvVTK~DLaed~dI~~~~~~L~eaGa~--~IF~~s~~d~--  131 (148)
T COG4917          58 LITTLQDADVIIYVHAANDPESRFPPGFLDI--GVKKVIGVVTKADLAEDADISLVKRWLREAGAE--PIFETSAVDN--  131 (148)
T ss_pred             HHHHhhccceeeeeecccCccccCCcccccc--cccceEEEEecccccchHhHHHHHHHHHHcCCc--ceEEEeccCc--
Confidence            4456789999999999999988888877654  467899999999999766677777888888865  8999999999  


Q ss_pred             CCHHHHHHHHH
Q psy15351         88 KGVQKILPTLQ   98 (352)
Q Consensus        88 ~gi~~L~~~i~   98 (352)
                      .|+++|++.+.
T Consensus       132 ~gv~~l~~~L~  142 (148)
T COG4917         132 QGVEELVDYLA  142 (148)
T ss_pred             ccHHHHHHHHH
Confidence            99999998875

>TIGR00475 selB selenocysteine-specific elongation factor SelB

Probab=98.43  E-value=1.4e-06  Score=88.21  Aligned_cols=99  Identities=11%  Similarity=0.147  Sum_probs=69.7

Q ss_pred             hHHHHHHHHhhccCEEEEEEcCCCCCCCcCHHHHHHHh-CCCC-EEEEEEcccCCCccchH----HHHHHHHhhcCC-CC
Q psy15351          3 RGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQ-NIRP-MVLVLNKRDLINSKHES----LIEEKVRKEQSH-IS   75 (352)
Q Consensus         3 ~~~~~~~~~i~~aD~vl~VvDar~p~~~~~~~l~~~l~-~~k~-~ilVlNK~Dl~~~~~~~----~~~~~~~~~~~~-~~   75 (352)
                      +.++.+...+.++|++++|+|+++++.....+...++. .+.| +++|+||+|+++++...    +..+.+...+.. ..
T Consensus        62 ~f~~~~~~g~~~aD~aILVVDa~~G~~~qT~ehl~il~~lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~~~~  141 (581)
T TIGR00475        62 KFISNAIAGGGGIDAALLVVDADEGVMTQTGEHLAVLDLLGIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIFLKNA  141 (581)
T ss_pred             HHHHHHHhhhccCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCCCCCC
Confidence            45667778889999999999999865443333333444 5667 99999999998765332    222333332221 12


Q ss_pred             cEEEeecCCCCCCCHHHHHHHHHHHhhh
Q psy15351         76 EVIFTNCRNPNCKGVQKILPTLQHISDN  103 (352)
Q Consensus        76 ~v~~iSa~~~~~~gi~~L~~~i~~~~~~  103 (352)
                      +++++||+++  .|++++.+.+.++++.
T Consensus       142 ~ii~vSA~tG--~GI~eL~~~L~~l~~~  167 (581)
T TIGR00475       142 KIFKTSAKTG--QGIGELKKELKNLLES  167 (581)
T ss_pred             cEEEEeCCCC--CCchhHHHHHHHHHHh
Confidence            5999999999  9999999998877664

In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.

>cd04160 Arfrp1 Arfrp1 subfamily

Probab=98.43  E-value=1.1e-06  Score=74.11  Aligned_cols=89  Identities=19%  Similarity=0.172  Sum_probs=58.9

Q ss_pred             HHHHhhccCEEEEEEcCCCCCCCc--CHHHHHHHh----CCCCEEEEEEcccCCCccchHHHHHHHHhh----cCCCCcE
Q psy15351          8 IEKHLKNVDIVIEVHDSRMPFTGR--NHLLQQSVQ----NIRPMVLVLNKRDLINSKHESLIEEKVRKE----QSHISEV   77 (352)
Q Consensus         8 ~~~~i~~aD~vl~VvDar~p~~~~--~~~l~~~l~----~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~----~~~~~~v   77 (352)
                      ....+..+|++++|+|+.++....  ...+..+++    .+.|+++|+||+|+.+.....+..+++...    +....++
T Consensus        67 ~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (167)
T cd04160          67 WDKYYAECHAIIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDALSVEEIKEVFQDKAEEIGRRDCLV  146 (167)
T ss_pred             HHHHhCCCCEEEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccCCCHHHHHHHhccccccccCCceEE
Confidence            445689999999999998653111  112223322    368999999999987654333433433221    1111258


Q ss_pred             EEeecCCCCCCCHHHHHHHHH
Q psy15351         78 IFTNCRNPNCKGVQKILPTLQ   98 (352)
Q Consensus        78 ~~iSa~~~~~~gi~~L~~~i~   98 (352)
                      +.+||+++  .|+++++++|.
T Consensus       147 ~~~Sa~~g--~gv~e~~~~l~  165 (167)
T cd04160         147 LPVSALEG--TGVREGIEWLV  165 (167)
T ss_pred             EEeeCCCC--cCHHHHHHHHh
Confidence            99999999  99999998875

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.

>cd04156 ARLTS1 ARLTS1 subfamily

Probab=98.42  E-value=9.4e-07  Score=73.93  Aligned_cols=88  Identities=20%  Similarity=0.161  Sum_probs=57.3

Q ss_pred             HHHhhccCEEEEEEcCCCCCCC--cCHHHHHHHh----CCCCEEEEEEcccCCCccchHHHHHHHHhhcCC---CCcEEE
Q psy15351          9 EKHLKNVDIVIEVHDSRMPFTG--RNHLLQQSVQ----NIRPMVLVLNKRDLINSKHESLIEEKVRKEQSH---ISEVIF   79 (352)
Q Consensus         9 ~~~i~~aD~vl~VvDar~p~~~--~~~~l~~~l~----~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~---~~~v~~   79 (352)
                      ...+..+|++++|+|++++.+.  ....+.++++    .+.|+++|+||+|+.......+....+......   ..+++.
T Consensus        62 ~~~~~~~~~iv~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~  141 (160)
T cd04156          62 KCYLENTDGLVYVVDSSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGALTAEEITRRFKLKKYCSDRDWYVQP  141 (160)
T ss_pred             HHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccCcCHHHHHHHcCCcccCCCCcEEEEe
Confidence            3468899999999999876421  1223333332    468999999999996543333333332111110   013788


Q ss_pred             eecCCCCCCCHHHHHHHHH
Q psy15351         80 TNCRNPNCKGVQKILPTLQ   98 (352)
Q Consensus        80 iSa~~~~~~gi~~L~~~i~   98 (352)
                      +||+++  +|+++++++|.
T Consensus       142 ~Sa~~~--~gv~~~~~~i~  158 (160)
T cd04156         142 CSAVTG--EGLAEAFRKLA  158 (160)
T ss_pred             cccccC--CChHHHHHHHh
Confidence            999999  99999998875

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h

>cd01886 EF-G Elongation factor G (EF-G) subfamily

Probab=98.42  E-value=5.1e-07  Score=82.77  Aligned_cols=64  Identities=17%  Similarity=0.163  Sum_probs=42.3

Q ss_pred             EEEEeCCCCCChHHHHHHHhCCCCCCCCcee------------cCCCCCceeEeeeeEEecCCCcEEEEeCCCCCC
Q psy15351        170 TVMVVGVPNVGKSSIINALRSSHMKKGKAVP------------VGPKAGVTRSVMSQVKISEKPLIYILDTPGISL  233 (352)
Q Consensus       170 ~v~i~G~pnvGKStliN~l~~~~~~~~~~~~------------~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~~  233 (352)
                      +|+++|.+|+|||||+|+|....-...+...            .....|+|.+.........+.++.++||||...
T Consensus         1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~d   76 (270)
T cd01886           1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVD   76 (270)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHH
Confidence            4899999999999999999732100001111            113557887765444444566899999999764

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta

>PRK04000 translation initiation factor IF-2 subunit gamma; Validated

Probab=98.41  E-value=2.2e-06  Score=83.31  Aligned_cols=99  Identities=15%  Similarity=0.174  Sum_probs=66.1

Q ss_pred             hHHHHHHHHhhccCEEEEEEcCCCCC-CCcCHHHHHHHh--CCCCEEEEEEcccCCCccchH----HHHHHHHhhcCCCC
Q psy15351          3 RGLKDIEKHLKNVDIVIEVHDSRMPF-TGRNHLLQQSVQ--NIRPMVLVLNKRDLINSKHES----LIEEKVRKEQSHIS   75 (352)
Q Consensus         3 ~~~~~~~~~i~~aD~vl~VvDar~p~-~~~~~~l~~~l~--~~k~~ilVlNK~Dl~~~~~~~----~~~~~~~~~~~~~~   75 (352)
                      +.+..+...+..+|++++|+|++.+. .........++.  ..+|+++|+||+|+.+++...    ++.+++........
T Consensus        97 ~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l~~~~i~~iiVVlNK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~  176 (411)
T PRK04000         97 TLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMALDIIGIKNIVIVQNKIDLVSKERALENYEQIKEFVKGTVAENA  176 (411)
T ss_pred             HHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEEeeccccchhHHHHHHHHHHHhccccCCCC
Confidence            34556777788899999999999875 333333333333  345789999999998754322    22222221111112


Q ss_pred             cEEEeecCCCCCCCHHHHHHHHHHHhhh
Q psy15351         76 EVIFTNCRNPNCKGVQKILPTLQHISDN  103 (352)
Q Consensus        76 ~v~~iSa~~~~~~gi~~L~~~i~~~~~~  103 (352)
                      +++++||+++  .|+++|++.|.+.++.
T Consensus       177 ~ii~vSA~~g--~gI~~L~~~L~~~l~~  202 (411)
T PRK04000        177 PIIPVSALHK--VNIDALIEAIEEEIPT  202 (411)
T ss_pred             eEEEEECCCC--cCHHHHHHHHHHhCCC
Confidence            5899999999  9999999999886653

>cd04158 ARD1 ARD1 subfamily

Probab=98.40  E-value=1.1e-06  Score=74.71  Aligned_cols=95  Identities=15%  Similarity=0.025  Sum_probs=61.5

Q ss_pred             HHHHhhccCEEEEEEcCCCCCCC--cCHHHHHHHh----CCCCEEEEEEcccCCCccchHHHHHHHHhhcC--C-CCcEE
Q psy15351          8 IEKHLKNVDIVIEVHDSRMPFTG--RNHLLQQSVQ----NIRPMVLVLNKRDLINSKHESLIEEKVRKEQS--H-ISEVI   78 (352)
Q Consensus         8 ~~~~i~~aD~vl~VvDar~p~~~--~~~~l~~~l~----~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~--~-~~~v~   78 (352)
                      ....+..+|.+++|+|+.++.+.  ....+..+++    .+.|+++|.||+|+......++..+++.....  . ...++
T Consensus        60 ~~~~~~~ad~ii~V~D~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (169)
T cd04158          60 WKHYYLNTQAVVFVVDSSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAGALSVEEMTELLSLHKLCCGRSWYIQ  139 (169)
T ss_pred             HHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCcccCCCHHHHHHHhCCccccCCCcEEEE
Confidence            33567899999999999875322  2223333432    24799999999999754333444343321111  0 01366


Q ss_pred             EeecCCCCCCCHHHHHHHHHHHhhhc
Q psy15351         79 FTNCRNPNCKGVQKILPTLQHISDNM  104 (352)
Q Consensus        79 ~iSa~~~~~~gi~~L~~~i~~~~~~~  104 (352)
                      .+||+++  .|+++++++|.+.+.++
T Consensus       140 ~~Sa~~g--~gv~~~f~~l~~~~~~~  163 (169)
T cd04158         140 GCDARSG--MGLYEGLDWLSRQLVAA  163 (169)
T ss_pred             eCcCCCC--CCHHHHHHHHHHHHhhc
Confidence            7899999  99999999998766543

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra

>PRK00454 engB GTP-binding protein YsxC; Reviewed

Probab=98.40  E-value=3e-06  Score=73.45  Aligned_cols=88  Identities=17%  Similarity=0.245  Sum_probs=63.3

Q ss_pred             HhhccCEEEEEEcCCCCCCCcCHHHHHHHh-CCCCEEEEEEcccCCCccchHHHH----HHHHhhcCCCCcEEEeecCCC
Q psy15351         11 HLKNVDIVIEVHDSRMPFTGRNHLLQQSVQ-NIRPMVLVLNKRDLINSKHESLIE----EKVRKEQSHISEVIFTNCRNP   85 (352)
Q Consensus        11 ~i~~aD~vl~VvDar~p~~~~~~~l~~~l~-~~k~~ilVlNK~Dl~~~~~~~~~~----~~~~~~~~~~~~v~~iSa~~~   85 (352)
                      ..+.++++++|+|++.+....+..+.+++. .+.|+++++||+|+.+........    +.+.....   +++++||+++
T Consensus       103 ~~~~~~~~~~v~d~~~~~~~~~~~i~~~l~~~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~~~---~~~~~Sa~~~  179 (196)
T PRK00454        103 TRENLKGVVLLIDSRHPLKELDLQMIEWLKEYGIPVLIVLTKADKLKKGERKKQLKKVRKALKFGDD---EVILFSSLKK  179 (196)
T ss_pred             hCccceEEEEEEecCCCCCHHHHHHHHHHHHcCCcEEEEEECcccCCHHHHHHHHHHHHHHHHhcCC---ceEEEEcCCC
Confidence            344568899999998876655545555555 578999999999998764433322    33322223   4899999999


Q ss_pred             CCCCHHHHHHHHHHHhhh
Q psy15351         86 NCKGVQKILPTLQHISDN  103 (352)
Q Consensus        86 ~~~gi~~L~~~i~~~~~~  103 (352)
                        .|++++++.|.+++.+
T Consensus       180 --~gi~~l~~~i~~~~~~  195 (196)
T PRK00454        180 --QGIDELRAAIAKWLAE  195 (196)
T ss_pred             --CCHHHHHHHHHHHhcC
Confidence              9999999999887653

>KOG1486|consensus

Probab=98.39  E-value=4.6e-07  Score=79.68  Aligned_cols=62  Identities=26%  Similarity=0.341  Sum_probs=54.4

Q ss_pred             cceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCCcEEEEeCCCCCCC
Q psy15351        167 YNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLP  234 (352)
Q Consensus       167 ~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~~~  234 (352)
                      ..-+|+++|+|.||||||+..++.      ..+......+||-..+.++.-.++..+.++|.|||+..
T Consensus        61 GdaRValIGfPSVGKStlLs~iT~------T~SeaA~yeFTTLtcIpGvi~y~ga~IQllDLPGIieG  122 (364)
T KOG1486|consen   61 GDARVALIGFPSVGKSTLLSKITS------THSEAASYEFTTLTCIPGVIHYNGANIQLLDLPGIIEG  122 (364)
T ss_pred             CCeEEEEecCCCccHHHHHHHhhc------chhhhhceeeeEEEeecceEEecCceEEEecCcccccc
Confidence            457899999999999999999995      55667788899999888888888889999999999985

>cd04154 Arl2 Arl2 subfamily

Probab=98.39  E-value=1.2e-06  Score=74.71  Aligned_cols=88  Identities=20%  Similarity=0.198  Sum_probs=59.0

Q ss_pred             HHHhhccCEEEEEEcCCCCCCCc--CHHHHHHHh----CCCCEEEEEEcccCCCccchHHHHHHHHhhc--CCCCcEEEe
Q psy15351          9 EKHLKNVDIVIEVHDSRMPFTGR--NHLLQQSVQ----NIRPMVLVLNKRDLINSKHESLIEEKVRKEQ--SHISEVIFT   80 (352)
Q Consensus         9 ~~~i~~aD~vl~VvDar~p~~~~--~~~l~~~l~----~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~--~~~~~v~~i   80 (352)
                      ...+..+|++++|+|+.++.+..  ...+..++.    .+.|+++|+||+|+......++..+.+....  ....+++.+
T Consensus        76 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (173)
T cd04154          76 RNYFESTDALIWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGALSEEEIREALELDKISSHHWRIQPC  155 (173)
T ss_pred             HHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccCCCHHHHHHHhCccccCCCceEEEec
Confidence            45678999999999998763211  122333332    4689999999999976544444444442110  011248999


Q ss_pred             ecCCCCCCCHHHHHHHHH
Q psy15351         81 NCRNPNCKGVQKILPTLQ   98 (352)
Q Consensus        81 Sa~~~~~~gi~~L~~~i~   98 (352)
                      ||+++  .|++++++++.
T Consensus       156 Sa~~g--~gi~~l~~~l~  171 (173)
T cd04154         156 SAVTG--EGLLQGIDWLV  171 (173)
T ss_pred             cCCCC--cCHHHHHHHHh
Confidence            99999  99999998874

Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.

>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma

Probab=98.39  E-value=2.8e-06  Score=82.61  Aligned_cols=98  Identities=15%  Similarity=0.189  Sum_probs=65.9

Q ss_pred             hHHHHHHHHhhccCEEEEEEcCCCCC-CCcCHHHHHHHh--CCCCEEEEEEcccCCCccchH----HHHHHHHhhcCCCC
Q psy15351          3 RGLKDIEKHLKNVDIVIEVHDSRMPF-TGRNHLLQQSVQ--NIRPMVLVLNKRDLINSKHES----LIEEKVRKEQSHIS   75 (352)
Q Consensus         3 ~~~~~~~~~i~~aD~vl~VvDar~p~-~~~~~~l~~~l~--~~k~~ilVlNK~Dl~~~~~~~----~~~~~~~~~~~~~~   75 (352)
                      +..+.+...+..+|++++|+|++.+. .....+...++.  ..+++++|+||+|+.+.+...    +..+++........
T Consensus        92 ~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~gi~~iIVvvNK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~  171 (406)
T TIGR03680        92 TLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEIIGIKNIVIVQNKIDLVSKEKALENYEEIKEFVKGTVAENA  171 (406)
T ss_pred             HHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHHcCCCeEEEEEEccccCCHHHHHHHHHHHHhhhhhcccCCC
Confidence            34566777888999999999999865 333333333333  346789999999998754322    22222222111112


Q ss_pred             cEEEeecCCCCCCCHHHHHHHHHHHhh
Q psy15351         76 EVIFTNCRNPNCKGVQKILPTLQHISD  102 (352)
Q Consensus        76 ~v~~iSa~~~~~~gi~~L~~~i~~~~~  102 (352)
                      +++++||+++  .|+++|+++|.+.++
T Consensus       172 ~ii~vSA~~g--~gi~~L~e~L~~~l~  196 (406)
T TIGR03680       172 PIIPVSALHN--ANIDALLEAIEKFIP  196 (406)
T ss_pred             eEEEEECCCC--CChHHHHHHHHHhCC
Confidence            4899999999  999999999988665

eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.

>PTZ00099 rab6; Provisional

Probab=98.39  E-value=4e-06  Score=71.93  Aligned_cols=92  Identities=15%  Similarity=0.103  Sum_probs=62.6

Q ss_pred             HHHhhccCEEEEEEcCCCCCCCcC--HHHHHHHh---CCCCEEEEEEcccCCCccc--hHHHHHHHHhhcCCCCcEEEee
Q psy15351          9 EKHLKNVDIVIEVHDSRMPFTGRN--HLLQQSVQ---NIRPMVLVLNKRDLINSKH--ESLIEEKVRKEQSHISEVIFTN   81 (352)
Q Consensus         9 ~~~i~~aD~vl~VvDar~p~~~~~--~~l~~~l~---~~k~~ilVlNK~Dl~~~~~--~~~~~~~~~~~~~~~~~v~~iS   81 (352)
                      ...+..||++|+|+|+.++.+..+  ..+..+.+   ...|+++|.||+||.....  ..+...+....+..   ++.+|
T Consensus        47 ~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~~~~~piilVgNK~DL~~~~~v~~~e~~~~~~~~~~~---~~e~S  123 (176)
T PTZ00099         47 PSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVIIALVGNKTDLGDLRKVTYEEGMQKAQEYNTM---FHETS  123 (176)
T ss_pred             HHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCE---EEEEE
Confidence            346789999999999987533222  22333332   3567899999999964321  23333433333433   77899


Q ss_pred             cCCCCCCCHHHHHHHHHHHhhhcc
Q psy15351         82 CRNPNCKGVQKILPTLQHISDNMT  105 (352)
Q Consensus        82 a~~~~~~gi~~L~~~i~~~~~~~~  105 (352)
                      |+++  .|+++++++|.+.+++.+
T Consensus       124 Ak~g--~nV~~lf~~l~~~l~~~~  145 (176)
T PTZ00099        124 AKAG--HNIKVLFKKIAAKLPNLD  145 (176)
T ss_pred             CCCC--CCHHHHHHHHHHHHHhcc
Confidence            9999  999999999998887543

>cd04124 RabL2 RabL2 subfamily

Probab=98.39  E-value=1.9e-06  Score=72.45  Aligned_cols=88  Identities=17%  Similarity=0.139  Sum_probs=59.5

Q ss_pred             HHHhhccCEEEEEEcCCCCCCCcC-HHHHHHHh---CCCCEEEEEEcccCCCccchHHHHHHHHhhcCCCCcEEEeecCC
Q psy15351          9 EKHLKNVDIVIEVHDSRMPFTGRN-HLLQQSVQ---NIRPMVLVLNKRDLINSKHESLIEEKVRKEQSHISEVIFTNCRN   84 (352)
Q Consensus         9 ~~~i~~aD~vl~VvDar~p~~~~~-~~l~~~l~---~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~v~~iSa~~   84 (352)
                      ...+..+|++++|+|+.++.+..+ ..+...++   .+.|+++|+||+|+.+.. ..+..++....+.   +++.+||++
T Consensus        67 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~p~ivv~nK~Dl~~~~-~~~~~~~~~~~~~---~~~~~Sa~~  142 (161)
T cd04124          67 ASYYHKAHACILVFDVTRKITYKNLSKWYEELREYRPEIPCIVVANKIDLDPSV-TQKKFNFAEKHNL---PLYYVSAAD  142 (161)
T ss_pred             HHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEECccCchhH-HHHHHHHHHHcCC---eEEEEeCCC
Confidence            346889999999999987644322 12222222   368999999999985432 2223333333344   489999999


Q ss_pred             CCCCCHHHHHHHHHHHhh
Q psy15351         85 PNCKGVQKILPTLQHISD  102 (352)
Q Consensus        85 ~~~~gi~~L~~~i~~~~~  102 (352)
                      +  .|++++++.+.+.+.
T Consensus       143 ~--~gv~~l~~~l~~~~~  158 (161)
T cd04124         143 G--TNVVKLFQDAIKLAV  158 (161)
T ss_pred             C--CCHHHHHHHHHHHHH
Confidence            9  999999998876543

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b

>cd04149 Arf6 Arf6 subfamily

Probab=98.39  E-value=1.3e-06  Score=74.29  Aligned_cols=87  Identities=18%  Similarity=0.078  Sum_probs=56.4

Q ss_pred             HHhhccCEEEEEEcCCCCCCCc--CHHHHHHHh----CCCCEEEEEEcccCCCccchHHHHHHHHhhcC--CCCcEEEee
Q psy15351         10 KHLKNVDIVIEVHDSRMPFTGR--NHLLQQSVQ----NIRPMVLVLNKRDLINSKHESLIEEKVRKEQS--HISEVIFTN   81 (352)
Q Consensus        10 ~~i~~aD~vl~VvDar~p~~~~--~~~l~~~l~----~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~--~~~~v~~iS   81 (352)
                      ..+..+|++++|+|+.++.+..  ...+.+++.    .+.|+++|.||+|+......++..+++.....  ..-.++.+|
T Consensus        72 ~~~~~a~~ii~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~S  151 (168)
T cd04149          72 HYYTGTQGLIFVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSC  151 (168)
T ss_pred             HHhccCCEEEEEEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCccCCCHHHHHHHcCCCccCCCcEEEEEee
Confidence            4579999999999998763221  122333332    35799999999999753323333333311110  001377899


Q ss_pred             cCCCCCCCHHHHHHHHH
Q psy15351         82 CRNPNCKGVQKILPTLQ   98 (352)
Q Consensus        82 a~~~~~~gi~~L~~~i~   98 (352)
                      |+++  .|+++++++|.
T Consensus       152 Ak~g--~gv~~~~~~l~  166 (168)
T cd04149         152 ATSG--DGLYEGLTWLS  166 (168)
T ss_pred             CCCC--CChHHHHHHHh
Confidence            9999  99999998875

Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t

>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily

Probab=98.37  E-value=4.6e-06  Score=70.18  Aligned_cols=90  Identities=14%  Similarity=0.123  Sum_probs=59.0

Q ss_pred             HHhhccCEEEEEEcCCCCCCCcCHHHHHHHh-CCCCEEEEEEcccCCCccc--hHHHHHHHHhhc---C-CCCcEEEeec
Q psy15351         10 KHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQ-NIRPMVLVLNKRDLINSKH--ESLIEEKVRKEQ---S-HISEVIFTNC   82 (352)
Q Consensus        10 ~~i~~aD~vl~VvDar~p~~~~~~~l~~~l~-~~k~~ilVlNK~Dl~~~~~--~~~~~~~~~~~~---~-~~~~v~~iSa   82 (352)
                      ..+..+|++++|+|+.++..........++. .++|+++|+||+|+.....  .......+....   . ...+++.+||
T Consensus        69 ~~~~~~d~il~v~d~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  148 (168)
T cd01887          69 RGASLTDIAILVVAADDGVMPQTIEAIKLAKAANVPFIVALNKIDKPNANPERVKNELSELGLQGEDEWGGDVQIVPTSA  148 (168)
T ss_pred             HHHhhcCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEEceecccccHHHHHHHHHHhhccccccccCcCcEEEeec
Confidence            4678999999999998765332222233333 6789999999999975432  111111111111   0 0125899999


Q ss_pred             CCCCCCCHHHHHHHHHHHh
Q psy15351         83 RNPNCKGVQKILPTLQHIS  101 (352)
Q Consensus        83 ~~~~~~gi~~L~~~i~~~~  101 (352)
                      +++  .|++++++++.++.
T Consensus       149 ~~~--~gi~~l~~~l~~~~  165 (168)
T cd01887         149 KTG--EGIDDLLEAILLLA  165 (168)
T ss_pred             ccC--CCHHHHHHHHHHhh
Confidence            999  99999999987654

IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.

>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1

Probab=98.37  E-value=1.1e-06  Score=74.56  Aligned_cols=89  Identities=19%  Similarity=0.305  Sum_probs=59.6

Q ss_pred             HHHHHHhhccCEEEEEEcCCCCC-----CCcC--HHHH-HHHh----------CCCCEEEEEEcccCCCccchHHHH--H
Q psy15351          6 KDIEKHLKNVDIVIEVHDSRMPF-----TGRN--HLLQ-QSVQ----------NIRPMVLVLNKRDLINSKHESLIE--E   65 (352)
Q Consensus         6 ~~~~~~i~~aD~vl~VvDar~p~-----~~~~--~~l~-~~l~----------~~k~~ilVlNK~Dl~~~~~~~~~~--~   65 (352)
                      +++...+..+|++++|+|+.++.     ...+  ..+. ....          .++|+++|+||+|+........+.  .
T Consensus        66 ~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~  145 (176)
T cd01881          66 NQFLAHIRRADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEELVRE  145 (176)
T ss_pred             HHHHHHHhccCEEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHHHHH
Confidence            35566788999999999998763     1111  1111 1110          268999999999998766544442  1


Q ss_pred             HHHhhcCCCCcEEEeecCCCCCCCHHHHHHHHHH
Q psy15351         66 KVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQH   99 (352)
Q Consensus        66 ~~~~~~~~~~~v~~iSa~~~~~~gi~~L~~~i~~   99 (352)
                      .....+.   +++.+||+++  .|++++++++..
T Consensus       146 ~~~~~~~---~~~~~Sa~~~--~gl~~l~~~l~~  174 (176)
T cd01881         146 LALEEGA---EVVPISAKTE--EGLDELIRAIYE  174 (176)
T ss_pred             HhcCCCC---CEEEEehhhh--cCHHHHHHHHHh
Confidence            1111223   4899999999  999999988754

Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to

>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases

Probab=98.37  E-value=1.7e-06  Score=74.64  Aligned_cols=90  Identities=13%  Similarity=0.061  Sum_probs=60.3

Q ss_pred             HHHHhhccCEEEEEEcCCCCCCC--cCHHHHHHHh----CCCCEEEEEEcccCCCccchHHHHHHHHhh---------cC
Q psy15351          8 IEKHLKNVDIVIEVHDSRMPFTG--RNHLLQQSVQ----NIRPMVLVLNKRDLINSKHESLIEEKVRKE---------QS   72 (352)
Q Consensus         8 ~~~~i~~aD~vl~VvDar~p~~~--~~~~l~~~l~----~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~---------~~   72 (352)
                      ....+..+|.+++|+|++++...  ....+.++++    .+.|+++|+||+|+......++..+.+.-.         +.
T Consensus        78 ~~~~~~~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~l~l~~~~~~~~~~~~  157 (184)
T smart00178       78 WKDYFPEVNGIVYLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPYAASEDELRYALGLTNTTGSKGKVGV  157 (184)
T ss_pred             HHHHhCCCCEEEEEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCCCHHHHHHHcCCCcccccccccCC
Confidence            34567899999999999876321  1223333332    478999999999986433334444443100         11


Q ss_pred             CCCcEEEeecCCCCCCCHHHHHHHHHH
Q psy15351         73 HISEVIFTNCRNPNCKGVQKILPTLQH   99 (352)
Q Consensus        73 ~~~~v~~iSa~~~~~~gi~~L~~~i~~   99 (352)
                      ....++.+||+++  .|+++++++|.+
T Consensus       158 ~~~~i~~~Sa~~~--~g~~~~~~wl~~  182 (184)
T smart00178      158 RPLEVFMCSVVRR--MGYGEGFKWLSQ  182 (184)
T ss_pred             ceeEEEEeecccC--CChHHHHHHHHh
Confidence            2235899999999  999999999864

Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.

>cd01889 SelB_euk SelB subfamily

Probab=98.36  E-value=4.9e-07  Score=78.52  Aligned_cols=64  Identities=25%  Similarity=0.311  Sum_probs=41.0

Q ss_pred             eEEEEeCCCCCChHHHHHHHhCCCC-CCCCceecCCCCCceeEeeee-EEec-------------CCCcEEEEeCCCCC
Q psy15351        169 TTVMVVGVPNVGKSSIINALRSSHM-KKGKAVPVGPKAGVTRSVMSQ-VKIS-------------EKPLIYILDTPGIS  232 (352)
Q Consensus       169 ~~v~i~G~pnvGKStliN~l~~~~~-~~~~~~~~~~~pg~T~~~~~~-~~~~-------------~~~~~~l~DtPGi~  232 (352)
                      ++|+++|.+|+|||||+|+|++..- ..-........+|+|.+.... ..+.             .+..+.++||||..
T Consensus         1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~   79 (192)
T cd01889           1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHA   79 (192)
T ss_pred             CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcH
Confidence            4799999999999999999985200 000112234456777775432 1111             13478999999973

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk

>cd04150 Arf1_5_like Arf1-Arf5-like subfamily

Probab=98.36  E-value=1.8e-06  Score=72.56  Aligned_cols=88  Identities=19%  Similarity=0.107  Sum_probs=55.8

Q ss_pred             HHHhhccCEEEEEEcCCCCCCC--cCHHHHHHHh----CCCCEEEEEEcccCCCccchHHHHHHHHhhcC--CCCcEEEe
Q psy15351          9 EKHLKNVDIVIEVHDSRMPFTG--RNHLLQQSVQ----NIRPMVLVLNKRDLINSKHESLIEEKVRKEQS--HISEVIFT   80 (352)
Q Consensus         9 ~~~i~~aD~vl~VvDar~p~~~--~~~~l~~~l~----~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~--~~~~v~~i   80 (352)
                      ......+|++++|+|+.++.+.  ....+.+.+.    ...|+++|.||+|+.+.....+..+.+.....  ....++.+
T Consensus        62 ~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~  141 (159)
T cd04150          62 RHYFQNTQGLIFVVDSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAMSAAEVTDKLGLHSLRNRNWYIQAT  141 (159)
T ss_pred             HHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCCCCHHHHHHHhCccccCCCCEEEEEe
Confidence            3457999999999999865321  1122333332    35899999999999654333333333311100  11135679


Q ss_pred             ecCCCCCCCHHHHHHHHH
Q psy15351         81 NCRNPNCKGVQKILPTLQ   98 (352)
Q Consensus        81 Sa~~~~~~gi~~L~~~i~   98 (352)
                      ||+++  .|+++++++|.
T Consensus       142 Sak~g--~gv~~~~~~l~  157 (159)
T cd04150         142 CATSG--DGLYEGLDWLS  157 (159)
T ss_pred             eCCCC--CCHHHHHHHHh
Confidence            99999  99999998875

This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents

>cd04151 Arl1 Arl1 subfamily

Probab=98.36  E-value=2.2e-06  Score=71.68  Aligned_cols=88  Identities=19%  Similarity=0.143  Sum_probs=57.6

Q ss_pred             HHHhhccCEEEEEEcCCCCCCCc--CHHHHHHHh----CCCCEEEEEEcccCCCccchHHHHHHHHhhcC--CCCcEEEe
Q psy15351          9 EKHLKNVDIVIEVHDSRMPFTGR--NHLLQQSVQ----NIRPMVLVLNKRDLINSKHESLIEEKVRKEQS--HISEVIFT   80 (352)
Q Consensus         9 ~~~i~~aD~vl~VvDar~p~~~~--~~~l~~~l~----~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~--~~~~v~~i   80 (352)
                      ...+..+|++++|+|+.++....  ...+..+++    .++|+++|+||+|+.+.....+..+.+.....  ...+++.+
T Consensus        61 ~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~  140 (158)
T cd04151          61 RCYYSNTDAIIYVVDSTDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGALSEAEISEKLGLSELKDRTWSIFKT  140 (158)
T ss_pred             HHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCCCHHHHHHHhCccccCCCcEEEEEe
Confidence            34689999999999998753211  122333332    36899999999999754433333333311110  00148999


Q ss_pred             ecCCCCCCCHHHHHHHHH
Q psy15351         81 NCRNPNCKGVQKILPTLQ   98 (352)
Q Consensus        81 Sa~~~~~~gi~~L~~~i~   98 (352)
                      ||+++  .|++++++++.
T Consensus       141 Sa~~~--~gi~~l~~~l~  156 (158)
T cd04151         141 SAIKG--EGLDEGMDWLV  156 (158)
T ss_pred             eccCC--CCHHHHHHHHh
Confidence            99999  99999998875

Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.

>PRK11058 GTPase HflX; Provisional

Probab=98.36  E-value=2.8e-06  Score=82.77  Aligned_cols=93  Identities=14%  Similarity=0.225  Sum_probs=64.2

Q ss_pred             HHHHHHHHhhccCEEEEEEcCCCCCCCcCH-HHHHHHh----CCCCEEEEEEcccCCCccchHHHHHHHHhhcCCCCcEE
Q psy15351          4 GLKDIEKHLKNVDIVIEVHDSRMPFTGRNH-LLQQSVQ----NIRPMVLVLNKRDLINSKHESLIEEKVRKEQSHISEVI   78 (352)
Q Consensus         4 ~~~~~~~~i~~aD~vl~VvDar~p~~~~~~-~l~~~l~----~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~v~   78 (352)
                      +++.+.+.+..||++|+|+|+.+|....+. .+.+++.    .++|+++|+||+|+.+...  ...+.. ..+.+  .++
T Consensus       266 ~f~~tl~~~~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~~~~~--~~~~~~-~~~~~--~~v  340 (426)
T PRK11058        266 AFKATLQETRQATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDMLDDFE--PRIDRD-EENKP--IRV  340 (426)
T ss_pred             HHHHHHHHhhcCCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCCCchh--HHHHHH-hcCCC--ceE
Confidence            466677788999999999999987543322 1223332    3689999999999975421  111111 12333  257


Q ss_pred             EeecCCCCCCCHHHHHHHHHHHhhh
Q psy15351         79 FTNCRNPNCKGVQKILPTLQHISDN  103 (352)
Q Consensus        79 ~iSa~~~~~~gi~~L~~~i~~~~~~  103 (352)
                      .+||+++  .|+++|+++|.+.+..
T Consensus       341 ~ISAktG--~GIdeL~e~I~~~l~~  363 (426)
T PRK11058        341 WLSAQTG--AGIPLLFQALTERLSG  363 (426)
T ss_pred             EEeCCCC--CCHHHHHHHHHHHhhh
Confidence            8999999  9999999999877653

>cd01863 Rab18 Rab18 subfamily

Probab=98.36  E-value=9.4e-07  Score=74.01  Aligned_cols=59  Identities=24%  Similarity=0.356  Sum_probs=39.3

Q ss_pred             eEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecC-CCcEEEEeCCCCC
Q psy15351        169 TTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISE-KPLIYILDTPGIS  232 (352)
Q Consensus       169 ~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~-~~~~~l~DtPGi~  232 (352)
                      ++|+++|.+|||||||+|++.+..    ......+.++.+..... +.... .-.+.++||||..
T Consensus         1 ~ki~v~G~~~~GKSsli~~l~~~~----~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~D~~g~~   60 (161)
T cd01863           1 LKILLIGDSGVGKSSLLLRFTDDT----FDPDLAATIGVDFKVKT-LTVDGKKVKLAIWDTAGQE   60 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCC----CCcccCCcccceEEEEE-EEECCEEEEEEEEECCCch
Confidence            479999999999999999999631    12234556665544322 22222 1257899999964

Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos

>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily

Probab=98.35  E-value=3.6e-06  Score=73.18  Aligned_cols=85  Identities=14%  Similarity=0.097  Sum_probs=54.4

Q ss_pred             HHHHHHhhccCEEEEEEcCCCCCCCcCHHHHHHHh-CCCCEEEEEEcccCCCccc---hHHHHHHHHhhcCC----CCcE
Q psy15351          6 KDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQ-NIRPMVLVLNKRDLINSKH---ESLIEEKVRKEQSH----ISEV   77 (352)
Q Consensus         6 ~~~~~~i~~aD~vl~VvDar~p~~~~~~~l~~~l~-~~k~~ilVlNK~Dl~~~~~---~~~~~~~~~~~~~~----~~~v   77 (352)
                      ..+...+..+|++++|+|+++........+...+. .+.|+++|+||+|+.....   .+++.+.+...+..    ..++
T Consensus        80 ~~~~~~~~~~d~~ilV~d~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  159 (194)
T cd01891          80 GEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALELGLKPIVVINKIDRPDARPEEVVDEVFDLFIELGATEEQLDFPV  159 (194)
T ss_pred             HHHHHHHHhcCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHhCCccccCccCE
Confidence            44566789999999999998754332223222222 5789999999999975432   33444444322110    1148


Q ss_pred             EEeecCCCCCCCHHH
Q psy15351         78 IFTNCRNPNCKGVQK   92 (352)
Q Consensus        78 ~~iSa~~~~~~gi~~   92 (352)
                      +++||+++  .|+.+
T Consensus       160 v~~Sa~~g--~~~~~  172 (194)
T cd01891         160 LYASAKNG--WASLN  172 (194)
T ss_pred             EEeehhcc--ccccc
Confidence            99999998  66643

BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co

>KOG1489|consensus

Probab=98.35  E-value=1.4e-06  Score=79.26  Aligned_cols=89  Identities=18%  Similarity=0.242  Sum_probs=59.6

Q ss_pred             HHHHHhhccCEEEEEEcCCCCCC-----CcC---HHHHHHHh--CCCCEEEEEEcccCCCccchHHHHHHHHhhcCCCCc
Q psy15351          7 DIEKHLKNVDIVIEVHDSRMPFT-----GRN---HLLQQSVQ--NIRPMVLVLNKRDLINSKHESLIEEKVRKEQSHISE   76 (352)
Q Consensus         7 ~~~~~i~~aD~vl~VvDar~p~~-----~~~---~~l~~~l~--~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~   76 (352)
                      ++.+++++|+++++|+|...+..     ...   .+++.|-+  ..+|.++|+||+|+.+.+  +..++.+.+.--. ..
T Consensus       267 ~FLrHiER~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae--~~~l~~L~~~lq~-~~  343 (366)
T KOG1489|consen  267 KFLRHIERCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEAE--KNLLSSLAKRLQN-PH  343 (366)
T ss_pred             HHHHHHHhhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhHH--HHHHHHHHHHcCC-Cc
Confidence            47899999999999999976521     111   12222222  578999999999996333  2333333322111 14


Q ss_pred             EEEeecCCCCCCCHHHHHHHHHHH
Q psy15351         77 VIFTNCRNPNCKGVQKILPTLQHI  100 (352)
Q Consensus        77 v~~iSa~~~~~~gi~~L~~~i~~~  100 (352)
                      |+.+||+++  +|+++|++.+++.
T Consensus       344 V~pvsA~~~--egl~~ll~~lr~~  365 (366)
T KOG1489|consen  344 VVPVSAKSG--EGLEELLNGLREL  365 (366)
T ss_pred             EEEeeeccc--cchHHHHHHHhhc
Confidence            899999999  9999999887653

>cd00154 Rab Rab family

Probab=98.35  E-value=7.8e-07  Score=73.57  Aligned_cols=58  Identities=22%  Similarity=0.322  Sum_probs=36.5

Q ss_pred             eEEEEeCCCCCChHHHHHHHhCCCCCCCCcee-cCCCCCceeEeeeeEEec-CCCcEEEEeCCCCC
Q psy15351        169 TTVMVVGVPNVGKSSIINALRSSHMKKGKAVP-VGPKAGVTRSVMSQVKIS-EKPLIYILDTPGIS  232 (352)
Q Consensus       169 ~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~-~~~~pg~T~~~~~~~~~~-~~~~~~l~DtPGi~  232 (352)
                      ++|+++|.||||||||+|++.+.     .... ..++.+.+..... +... ....+.++||||..
T Consensus         1 ~~i~~~G~~~~GKStl~~~l~~~-----~~~~~~~~t~~~~~~~~~-~~~~~~~~~~~l~D~~g~~   60 (159)
T cd00154           1 FKIVLIGDSGVGKTSLLLRFVDG-----KFDENYKSTIGVDFKSKT-IEIDGKTVKLQIWDTAGQE   60 (159)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhC-----cCCCccCCceeeeeEEEE-EEECCEEEEEEEEecCChH
Confidence            47999999999999999999863     2222 2333343333221 1111 12357899999973

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di

>PRK13768 GTPase; Provisional

Probab=98.35  E-value=2.2e-06  Score=77.89  Aligned_cols=95  Identities=17%  Similarity=0.210  Sum_probs=65.4

Q ss_pred             HHHHHHhhc--cCEEEEEEcCCCCCCCcCHHHHHHH------hCCCCEEEEEEcccCCCccchHHHHHHHH---------
Q psy15351          6 KDIEKHLKN--VDIVIEVHDSRMPFTGRNHLLQQSV------QNIRPMVLVLNKRDLINSKHESLIEEKVR---------   68 (352)
Q Consensus         6 ~~~~~~i~~--aD~vl~VvDar~p~~~~~~~l~~~l------~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~---------   68 (352)
                      +.+.+.++.  ++++++|+|++.+....+.....++      ..++|+++|+||+|+++....+...+++.         
T Consensus       118 ~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~~~~~i~v~nK~D~~~~~~~~~~~~~l~~~~~~~~~l  197 (253)
T PRK13768        118 RKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRLGLPQIPVLNKADLLSEEELERILKWLEDPEYLLEEL  197 (253)
T ss_pred             HHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHHcCCCEEEEEEhHhhcCchhHHHHHHHHhCHHHHHHHH
Confidence            344455555  8999999999876544443332222      25789999999999998765433333222         


Q ss_pred             -------------------hhcCCCCcEEEeecCCCCCCCHHHHHHHHHHHhhh
Q psy15351         69 -------------------KEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDN  103 (352)
Q Consensus        69 -------------------~~~~~~~~v~~iSa~~~~~~gi~~L~~~i~~~~~~  103 (352)
                                         +.+ ...+++.+|++++  .|+++|+++|.+.++.
T Consensus       198 ~~~~~~~~~~~~~~~~~i~~~~-~~~~vi~iSa~~~--~gl~~L~~~I~~~l~~  248 (253)
T PRK13768        198 KLEKGLQGLLSLELLRALEETG-LPVRVIPVSAKTG--EGFDELYAAIQEVFCG  248 (253)
T ss_pred             hcccchHHHHHHHHHHHHHHHC-CCCcEEEEECCCC--cCHHHHHHHHHHHcCC
Confidence                               212 1125899999999  9999999999988764

>cd01893 Miro1 Miro1 subfamily

Probab=98.34  E-value=2.9e-06  Score=71.70  Aligned_cols=93  Identities=15%  Similarity=0.161  Sum_probs=60.6

Q ss_pred             HHHHHhhccCEEEEEEcCCCCCCCcC--HHHHHHHh---CCCCEEEEEEcccCCCccch---HHHHHHHHhhcCCCCcEE
Q psy15351          7 DIEKHLKNVDIVIEVHDSRMPFTGRN--HLLQQSVQ---NIRPMVLVLNKRDLINSKHE---SLIEEKVRKEQSHISEVI   78 (352)
Q Consensus         7 ~~~~~i~~aD~vl~VvDar~p~~~~~--~~l~~~l~---~~k~~ilVlNK~Dl~~~~~~---~~~~~~~~~~~~~~~~v~   78 (352)
                      .+...+..+|++++|+|+.++.+...  ..+...++   .+.|+++|+||+|+.+....   .+....+.+......+++
T Consensus        63 ~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~  142 (166)
T cd01893          63 NLAAEIRKANVICLVYSVDRPSTLERIRTKWLPLIRRLGVKVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEFREIETCV  142 (166)
T ss_pred             HHhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhcccccchhHHHHHHHHHHHHHhcccEEE
Confidence            34556789999999999987654332  12222222   46899999999999865432   222222211111112588


Q ss_pred             EeecCCCCCCCHHHHHHHHHHHh
Q psy15351         79 FTNCRNPNCKGVQKILPTLQHIS  101 (352)
Q Consensus        79 ~iSa~~~~~~gi~~L~~~i~~~~  101 (352)
                      .+||+++  .|++++++.+.+.+
T Consensus       143 e~Sa~~~--~~v~~lf~~~~~~~  163 (166)
T cd01893         143 ECSAKTL--INVSEVFYYAQKAV  163 (166)
T ss_pred             Eeccccc--cCHHHHHHHHHHHh
Confidence            9999999  99999999887643

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily

Probab=98.34  E-value=3.2e-06  Score=72.86  Aligned_cols=90  Identities=20%  Similarity=0.086  Sum_probs=57.4

Q ss_pred             HhhccCEEEEEEcCCCCCCC--cCHHHHHHHh----CCCCEEEEEEcccCCCccchHHHHHHHH--hhcC-CCCcEEEee
Q psy15351         11 HLKNVDIVIEVHDSRMPFTG--RNHLLQQSVQ----NIRPMVLVLNKRDLINSKHESLIEEKVR--KEQS-HISEVIFTN   81 (352)
Q Consensus        11 ~i~~aD~vl~VvDar~p~~~--~~~~l~~~l~----~~k~~ilVlNK~Dl~~~~~~~~~~~~~~--~~~~-~~~~v~~iS   81 (352)
                      .+..+|++++|+|+.++-..  ....+.++.+    .++|+++|+||+|+......+.+...+.  +.+. ...+++.+|
T Consensus        72 ~~~~~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  151 (183)
T cd04152          72 YTRCTDGIVFVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPNALSVSEVEKLLALHELSASTPWHVQPAC  151 (183)
T ss_pred             HhccCCEEEEEEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccccCCHHHHHHHhCccccCCCCceEEEEee
Confidence            46789999999999875221  1112222222    4689999999999865322233322221  1111 011478899


Q ss_pred             cCCCCCCCHHHHHHHHHHHhh
Q psy15351         82 CRNPNCKGVQKILPTLQHISD  102 (352)
Q Consensus        82 a~~~~~~gi~~L~~~i~~~~~  102 (352)
                      |+++  .|+++++++|.+.+.
T Consensus       152 A~~~--~gi~~l~~~l~~~l~  170 (183)
T cd04152         152 AIIG--EGLQEGLEKLYEMIL  170 (183)
T ss_pred             cccC--CCHHHHHHHHHHHHH
Confidence            9999  999999999886664

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.

>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily

Probab=98.34  E-value=2e-06  Score=73.45  Aligned_cols=88  Identities=19%  Similarity=0.118  Sum_probs=57.1

Q ss_pred             HHHhhccCEEEEEEcCCCCCCCc--CHHHHHHHh----CCCCEEEEEEcccCCCccchHHHHHHHHhhcC--CCCcEEEe
Q psy15351          9 EKHLKNVDIVIEVHDSRMPFTGR--NHLLQQSVQ----NIRPMVLVLNKRDLINSKHESLIEEKVRKEQS--HISEVIFT   80 (352)
Q Consensus         9 ~~~i~~aD~vl~VvDar~p~~~~--~~~l~~~l~----~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~--~~~~v~~i   80 (352)
                      ...+..+|++++|+|+.++....  ...+.++++    .+.|+++|+||+|+.......+..+.+.....  ..-+++.+
T Consensus        77 ~~~~~~~d~vi~V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~~~~~~i~~~l~~~~~~~~~~~~~~~  156 (174)
T cd04153          77 NTYYTNTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGAMTPAEISESLGLTSIRDHTWHIQGC  156 (174)
T ss_pred             HHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEec
Confidence            34578999999999998763221  122334433    35899999999998753323333333311000  00147899


Q ss_pred             ecCCCCCCCHHHHHHHHH
Q psy15351         81 NCRNPNCKGVQKILPTLQ   98 (352)
Q Consensus        81 Sa~~~~~~gi~~L~~~i~   98 (352)
                      ||+++  .|+++++++|.
T Consensus       157 SA~~g--~gi~e~~~~l~  172 (174)
T cd04153         157 CALTG--EGLPEGLDWIA  172 (174)
T ss_pred             ccCCC--CCHHHHHHHHh
Confidence            99999  99999998875

Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.

>KOG1423|consensus

Probab=98.33  E-value=1.9e-06  Score=77.98  Aligned_cols=101  Identities=20%  Similarity=0.228  Sum_probs=71.2

Q ss_pred             hHHHHHHHHhhccCEEEEEEcCCCCCCCcCHHHHHHHh--CCCCEEEEEEcccCCCccc-----------------hHHH
Q psy15351          3 RGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQ--NIRPMVLVLNKRDLINSKH-----------------ESLI   63 (352)
Q Consensus         3 ~~~~~~~~~i~~aD~vl~VvDar~p~~~~~~~l~~~l~--~~k~~ilVlNK~Dl~~~~~-----------------~~~~   63 (352)
                      ..++..|.+++.||+|+.|+|+.++-...++.+.+.++  ...|-++|+||+|...+..                 ..+|
T Consensus       144 s~lq~~~~a~q~AD~vvVv~Das~tr~~l~p~vl~~l~~ys~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~v  223 (379)
T KOG1423|consen  144 SVLQNPRDAAQNADCVVVVVDASATRTPLHPRVLHMLEEYSKIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLEV  223 (379)
T ss_pred             HhhhCHHHHHhhCCEEEEEEeccCCcCccChHHHHHHHHHhcCCceeeccchhcchhhhHHhhhHHhccccccchhhhhH
Confidence            34556889999999999999998765556664444333  4688899999999765432                 1123


Q ss_pred             HHHHHhh----------cC-CCCcEEEeecCCCCCCCHHHHHHHHHHHhhhcc
Q psy15351         64 EEKVRKE----------QS-HISEVIFTNCRNPNCKGVQKILPTLQHISDNMT  105 (352)
Q Consensus        64 ~~~~~~~----------~~-~~~~v~~iSa~~~~~~gi~~L~~~i~~~~~~~~  105 (352)
                      .+.+...          |. .|..||++||++|  +|++++.++|....+.++
T Consensus       224 ~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G--~GikdlkqyLmsqa~~gp  274 (379)
T KOG1423|consen  224 QEKFTDVPSDEKWRTICGWSHFERVFMVSALYG--EGIKDLKQYLMSQAPPGP  274 (379)
T ss_pred             HHHhccCCcccccccccCcccceeEEEEecccc--cCHHHHHHHHHhcCCCCC
Confidence            3333111          11 1457999999999  999999999987776543

>cd04142 RRP22 RRP22 subfamily

Probab=98.33  E-value=7.8e-07  Score=77.80  Aligned_cols=59  Identities=24%  Similarity=0.358  Sum_probs=36.3

Q ss_pred             eEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCC--cEEEEeCCCCCC
Q psy15351        169 TTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKP--LIYILDTPGISL  233 (352)
Q Consensus       169 ~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~--~~~l~DtPGi~~  233 (352)
                      ++|+++|.||||||||+|++.+.     .. .....|.++.+.........+.  .+.++||||...
T Consensus         1 ~kI~ivG~~~vGKTsLi~~~~~~-----~f-~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~   61 (198)
T cd04142           1 VRVAVLGAPGVGKTAIVRQFLAQ-----EF-PEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQR   61 (198)
T ss_pred             CEEEEECCCCCcHHHHHHHHHcC-----CC-CcccCCccccccceeEEEECCEEEEEEEEeCCCccc
Confidence            47999999999999999999863     11 1112333332221111112232  467999999864

RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.

>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily

Probab=98.33  E-value=3.6e-06  Score=70.51  Aligned_cols=88  Identities=22%  Similarity=0.187  Sum_probs=59.1

Q ss_pred             HHHhhccCEEEEEEcCCCCCCCcC--HHHHHHHh----CCCCEEEEEEcccCCCccc--hHHHHHHHHhhcCCCCcEEEe
Q psy15351          9 EKHLKNVDIVIEVHDSRMPFTGRN--HLLQQSVQ----NIRPMVLVLNKRDLINSKH--ESLIEEKVRKEQSHISEVIFT   80 (352)
Q Consensus         9 ~~~i~~aD~vl~VvDar~p~~~~~--~~l~~~l~----~~k~~ilVlNK~Dl~~~~~--~~~~~~~~~~~~~~~~~v~~i   80 (352)
                      ...+..+|.+++|+|+.++.+...  ..+..+.+    .+.|+++|+||+|+.+...  ..+..++.+..+..   ++.+
T Consensus        68 ~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~---~~~~  144 (164)
T cd04145          68 EQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKVSREEGQELARKLKIP---YIET  144 (164)
T ss_pred             HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccceecHHHHHHHHHHcCCc---EEEe
Confidence            356789999999999987543211  11122222    3679999999999976432  22333333334554   8999


Q ss_pred             ecCCCCCCCHHHHHHHHHHHh
Q psy15351         81 NCRNPNCKGVQKILPTLQHIS  101 (352)
Q Consensus        81 Sa~~~~~~gi~~L~~~i~~~~  101 (352)
                      ||+++  .|++++++++.+.+
T Consensus       145 Sa~~~--~~i~~l~~~l~~~~  163 (164)
T cd04145         145 SAKDR--LNVDKAFHDLVRVI  163 (164)
T ss_pred             eCCCC--CCHHHHHHHHHHhh
Confidence            99999  99999998886543

This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali

>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB

Probab=98.33  E-value=2.3e-06  Score=73.37  Aligned_cols=76  Identities=18%  Similarity=0.285  Sum_probs=53.9

Q ss_pred             hccCEEEEEEcCCCCCCCcCHHHHHHHh-CCCCEEEEEEcccCCCccch----HHHHHHHHhhcCCCCcEEEeecCCCCC
Q psy15351         13 KNVDIVIEVHDSRMPFTGRNHLLQQSVQ-NIRPMVLVLNKRDLINSKHE----SLIEEKVRKEQSHISEVIFTNCRNPNC   87 (352)
Q Consensus        13 ~~aD~vl~VvDar~p~~~~~~~l~~~l~-~~k~~ilVlNK~Dl~~~~~~----~~~~~~~~~~~~~~~~v~~iSa~~~~~   87 (352)
                      ..+|.+++|+|++.++...+..+..++. .++|+++|+||+|+.++...    .++.+.+...+. ..+++.+||+++  
T Consensus        99 ~~~~~ii~vvd~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~~~-~~~v~~~Sa~~g--  175 (179)
T TIGR03598        99 ENLKGVVLLMDIRHPLKELDLEMLEWLRERGIPVLIVLTKADKLKKSELNKQLKKIKKALKKDAD-DPSVQLFSSLKK--  175 (179)
T ss_pred             hhhcEEEEEecCCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCCHHHHHHHHHHHHHHHhhccC-CCceEEEECCCC--
Confidence            4568999999999877766655555554 67899999999999865432    334444443321 125999999999  


Q ss_pred             CCHH
Q psy15351         88 KGVQ   91 (352)
Q Consensus        88 ~gi~   91 (352)
                      +|++
T Consensus       176 ~gi~  179 (179)
T TIGR03598       176 TGID  179 (179)
T ss_pred             CCCC
Confidence            8863

Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.

>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor

Probab=98.33  E-value=2.8e-06  Score=72.67  Aligned_cols=90  Identities=19%  Similarity=0.070  Sum_probs=57.1

Q ss_pred             HHhhccCEEEEEEcCCCCCCC--cCHHHHHHHh----CCCCEEEEEEcccCCCccchHHHHHHHHhhcC--CCCcEEEee
Q psy15351         10 KHLKNVDIVIEVHDSRMPFTG--RNHLLQQSVQ----NIRPMVLVLNKRDLINSKHESLIEEKVRKEQS--HISEVIFTN   81 (352)
Q Consensus        10 ~~i~~aD~vl~VvDar~p~~~--~~~~l~~~l~----~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~--~~~~v~~iS   81 (352)
                      ..+..+|++|+|+|+.++.+.  ....+.+++.    .+.|+++|+||+||.......+..+.+.-...  ....++.+|
T Consensus        76 ~~~~~ad~ii~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~S  155 (175)
T smart00177       76 HYYTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAMKAAEITEKLGLHSIRDRNWYIQPTC  155 (175)
T ss_pred             HHhCCCCEEEEEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCCCHHHHHHHhCccccCCCcEEEEEee
Confidence            357999999999999876321  1222333332    35799999999999754322333332210000  101255799


Q ss_pred             cCCCCCCCHHHHHHHHHHHh
Q psy15351         82 CRNPNCKGVQKILPTLQHIS  101 (352)
Q Consensus        82 a~~~~~~gi~~L~~~i~~~~  101 (352)
                      |+++  .|+++++++|.+.+
T Consensus       156 a~~g--~gv~e~~~~l~~~~  173 (175)
T smart00177      156 ATSG--DGLYEGLTWLSNNL  173 (175)
T ss_pred             CCCC--CCHHHHHHHHHHHh
Confidence            9999  99999999987653

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).

>cd04157 Arl6 Arl6 subfamily

Probab=98.33  E-value=3.2e-06  Score=70.71  Aligned_cols=88  Identities=22%  Similarity=0.195  Sum_probs=57.0

Q ss_pred             HHHhhccCEEEEEEcCCCCCCCc--CHHHHHHHh------CCCCEEEEEEcccCCCccchHHHHHHHHhh--cCCCCcEE
Q psy15351          9 EKHLKNVDIVIEVHDSRMPFTGR--NHLLQQSVQ------NIRPMVLVLNKRDLINSKHESLIEEKVRKE--QSHISEVI   78 (352)
Q Consensus         9 ~~~i~~aD~vl~VvDar~p~~~~--~~~l~~~l~------~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~--~~~~~~v~   78 (352)
                      ...+..+|++++|+|++++.+..  ...+..+++      .+.|+++|+||+|+.+.....++.+.+.-.  ......++
T Consensus        63 ~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~  142 (162)
T cd04157          63 EHYYKNIQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDALTAVKITQLLGLENIKDKPWHIF  142 (162)
T ss_pred             HHHHccCCEEEEEEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCCCHHHHHHHhCCccccCceEEEE
Confidence            34578999999999998764321  122323322      368999999999997654333333332111  00111378


Q ss_pred             EeecCCCCCCCHHHHHHHHH
Q psy15351         79 FTNCRNPNCKGVQKILPTLQ   98 (352)
Q Consensus        79 ~iSa~~~~~~gi~~L~~~i~   98 (352)
                      .+||+++  .|+++++++|.
T Consensus       143 ~~Sa~~g--~gv~~~~~~l~  160 (162)
T cd04157         143 ASNALTG--EGLDEGVQWLQ  160 (162)
T ss_pred             EeeCCCC--CchHHHHHHHh
Confidence            8999999  99999999875

Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A

>cd04166 CysN_ATPS CysN_ATPS subfamily

Probab=98.33  E-value=3.1e-06  Score=74.58  Aligned_cols=87  Identities=15%  Similarity=0.058  Sum_probs=56.2

Q ss_pred             HHHHHHHhhccCEEEEEEcCCCCCCCcCHHHHHHHh-CC-CCEEEEEEcccCCCccc--h----HHHHHHHHhhcCCCCc
Q psy15351          5 LKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQ-NI-RPMVLVLNKRDLINSKH--E----SLIEEKVRKEQSHISE   76 (352)
Q Consensus         5 ~~~~~~~i~~aD~vl~VvDar~p~~~~~~~l~~~l~-~~-k~~ilVlNK~Dl~~~~~--~----~~~~~~~~~~~~~~~~   76 (352)
                      ...+...+..+|++|+|+|++.++.........++. .+ +++++|+||+|+.....  .    .+..+.++..+....+
T Consensus        91 ~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~~~~~~~~~~~~iIvviNK~D~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  170 (208)
T cd04166          91 TRNMVTGASTADLAILLVDARKGVLEQTRRHSYILSLLGIRHVVVAVNKMDLVDYSEEVFEEIVADYLAFAAKLGIEDIT  170 (208)
T ss_pred             HHHHHHhhhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCCcEEEEEEchhcccCCHHHHHHHHHHHHHHHHHcCCCCce
Confidence            345666789999999999999876544443333333 34 45677999999975321  1    1222233333433235


Q ss_pred             EEEeecCCCCCCCHHHH
Q psy15351         77 VIFTNCRNPNCKGVQKI   93 (352)
Q Consensus        77 v~~iSa~~~~~~gi~~L   93 (352)
                      ++++||+++  .|+.+.
T Consensus       171 ii~iSA~~g--~ni~~~  185 (208)
T cd04166         171 FIPISALDG--DNVVSR  185 (208)
T ss_pred             EEEEeCCCC--CCCccC
Confidence            899999999  887753

CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.

>cd01890 LepA LepA subfamily

Probab=98.32  E-value=1.7e-06  Score=73.88  Aligned_cols=64  Identities=19%  Similarity=0.313  Sum_probs=37.5

Q ss_pred             EEEEeCCCCCChHHHHHHHhCCC--CCC-CC------ceecCCCCCceeEeeee-EEe----cCCCcEEEEeCCCCCC
Q psy15351        170 TVMVVGVPNVGKSSIINALRSSH--MKK-GK------AVPVGPKAGVTRSVMSQ-VKI----SEKPLIYILDTPGISL  233 (352)
Q Consensus       170 ~v~i~G~pnvGKStliN~l~~~~--~~~-~~------~~~~~~~pg~T~~~~~~-~~~----~~~~~~~l~DtPGi~~  233 (352)
                      +|+++|.+|||||||+|+|.+..  +.. ..      ........|+|...+.. ...    ..+..+.++||||...
T Consensus         2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~   79 (179)
T cd01890           2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVD   79 (179)
T ss_pred             cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChh
Confidence            58999999999999999998621  000 00      00111234566554321 111    1223577999999865

LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.

>PLN03118 Rab family protein; Provisional

Probab=98.32  E-value=1.3e-06  Score=77.15  Aligned_cols=62  Identities=27%  Similarity=0.395  Sum_probs=40.8

Q ss_pred             CcceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCC-CcEEEEeCCCCCC
Q psy15351        166 VYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEK-PLIYILDTPGISL  233 (352)
Q Consensus       166 ~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~-~~~~l~DtPGi~~  233 (352)
                      ...++|+++|.+|||||||+|+|.+.     ......+..|.+.... .+...+. -.+.++||||...
T Consensus        12 ~~~~kv~ivG~~~vGKTsli~~l~~~-----~~~~~~~t~~~~~~~~-~~~~~~~~~~l~l~Dt~G~~~   74 (211)
T PLN03118         12 DLSFKILLIGDSGVGKSSLLVSFISS-----SVEDLAPTIGVDFKIK-QLTVGGKRLKLTIWDTAGQER   74 (211)
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHhC-----CCCCcCCCceeEEEEE-EEEECCEEEEEEEEECCCchh
Confidence            34689999999999999999999863     2233444444433322 2222221 2578999999643

>COG0536 Obg Predicted GTPase [General function prediction only]

Probab=98.31  E-value=2e-06  Score=79.05  Aligned_cols=94  Identities=17%  Similarity=0.332  Sum_probs=65.1

Q ss_pred             HHHHHhhccCEEEEEEcCCCCCCCcC---------HHHHHHHh--CCCCEEEEEEcccCC-CccchHHHHHHHHhhcCCC
Q psy15351          7 DIEKHLKNVDIVIEVHDSRMPFTGRN---------HLLQQSVQ--NIRPMVLVLNKRDLI-NSKHESLIEEKVRKEQSHI   74 (352)
Q Consensus         7 ~~~~~i~~aD~vl~VvDar~p~~~~~---------~~l~~~l~--~~k~~ilVlNK~Dl~-~~~~~~~~~~~~~~~~~~~   74 (352)
                      ++.++++++.++++|+|... ...++         .++..|-.  .+||.++|+||+|+. +.+..+...+++.+.... 
T Consensus       230 ~FLrHIERt~vL~hviD~s~-~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~~~~~~-  307 (369)
T COG0536         230 RFLRHIERTRVLLHVIDLSP-IDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEEELEELKKALAEALGW-  307 (369)
T ss_pred             HHHHHHHhhheeEEEEecCc-ccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCHHHHHHHHHHHHHhcCC-
Confidence            57889999999999999862 22122         22333321  589999999999954 445556666666544222 


Q ss_pred             CcEEEeecCCCCCCCHHHHHHHHHHHhhhc
Q psy15351         75 SEVIFTNCRNPNCKGVQKILPTLQHISDNM  104 (352)
Q Consensus        75 ~~v~~iSa~~~~~~gi~~L~~~i~~~~~~~  104 (352)
                      ...+++||.++  +|+++|+..+.+++...
T Consensus       308 ~~~~~ISa~t~--~g~~~L~~~~~~~l~~~  335 (369)
T COG0536         308 EVFYLISALTR--EGLDELLRALAELLEET  335 (369)
T ss_pred             Ccceeeehhcc--cCHHHHHHHHHHHHHHh
Confidence            02223999999  99999999998887754

>cd01860 Rab5_related Rab5-related subfamily

Probab=98.31  E-value=1.3e-06  Score=73.20  Aligned_cols=58  Identities=21%  Similarity=0.287  Sum_probs=37.4

Q ss_pred             eEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCC-CcEEEEeCCCC
Q psy15351        169 TTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEK-PLIYILDTPGI  231 (352)
Q Consensus       169 ~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~-~~~~l~DtPGi  231 (352)
                      ++|+++|.+|||||||+|++.+...    .....+..|.+.... .+..... -.+.++||||-
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~----~~~~~~t~~~~~~~~-~v~~~~~~~~~~i~D~~G~   60 (163)
T cd01860           2 FKLVLLGDSSVGKSSLVLRFVKNEF----SENQESTIGAAFLTQ-TVNLDDTTVKFEIWDTAGQ   60 (163)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCC----CCCCCCccceeEEEE-EEEECCEEEEEEEEeCCch
Confidence            6899999999999999999997321    122444555433221 1222221 25789999994

This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo

>cd01866 Rab2 Rab2 subfamily

Probab=98.31  E-value=1.3e-06  Score=73.91  Aligned_cols=59  Identities=22%  Similarity=0.240  Sum_probs=37.3

Q ss_pred             ceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCC-CcEEEEeCCCC
Q psy15351        168 NTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEK-PLIYILDTPGI  231 (352)
Q Consensus       168 ~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~-~~~~l~DtPGi  231 (352)
                      .++|+++|.||||||||+|++.+..    .........|.+.... .+..... -.+.++||||.
T Consensus         4 ~~ki~vvG~~~vGKSsLl~~l~~~~----~~~~~~~t~~~~~~~~-~~~~~~~~~~~~i~Dt~G~   63 (168)
T cd01866           4 LFKYIIIGDTGVGKSCLLLQFTDKR----FQPVHDLTIGVEFGAR-MITIDGKQIKLQIWDTAGQ   63 (168)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCC----CCCCCCCccceeEEEE-EEEECCEEEEEEEEECCCc
Confidence            3789999999999999999999621    1112223334433322 2222221 25789999994

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur

>TIGR01393 lepA GTP-binding protein LepA

Probab=98.31  E-value=5.5e-06  Score=84.07  Aligned_cols=98  Identities=14%  Similarity=0.196  Sum_probs=67.7

Q ss_pred             HHHHHHHHhhccCEEEEEEcCCCCCCCcCHH-HHHHHhCCCCEEEEEEcccCCCccchHHHHHHHHh-hcCCCCcEEEee
Q psy15351          4 GLKDIEKHLKNVDIVIEVHDSRMPFTGRNHL-LQQSVQNIRPMVLVLNKRDLINSKHESLIEEKVRK-EQSHISEVIFTN   81 (352)
Q Consensus         4 ~~~~~~~~i~~aD~vl~VvDar~p~~~~~~~-l~~~l~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~-~~~~~~~v~~iS   81 (352)
                      ....+...+..+|.+|+|+|++++....... +...+..+.|+++|+||+|+..... ....+.+.+ .+....+++++|
T Consensus        83 F~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~~~ipiIiViNKiDl~~~~~-~~~~~el~~~lg~~~~~vi~vS  161 (595)
T TIGR01393        83 FSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALENDLEIIPVINKIDLPSADP-ERVKKEIEEVIGLDASEAILAS  161 (595)
T ss_pred             HHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHHcCCCEEEEEECcCCCccCH-HHHHHHHHHHhCCCcceEEEee
Confidence            3445667889999999999999876544332 2222335789999999999965332 222222222 233323589999


Q ss_pred             cCCCCCCCHHHHHHHHHHHhhhc
Q psy15351         82 CRNPNCKGVQKILPTLQHISDNM  104 (352)
Q Consensus        82 a~~~~~~gi~~L~~~i~~~~~~~  104 (352)
                      |+++  .|+++|+++|.+.++..
T Consensus       162 AktG--~GI~~Lle~I~~~lp~p  182 (595)
T TIGR01393       162 AKTG--IGIEEILEAIVKRVPPP  182 (595)
T ss_pred             ccCC--CCHHHHHHHHHHhCCCC
Confidence            9999  99999999998887643

LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.

>PRK12317 elongation factor 1-alpha; Reviewed

Probab=98.30  E-value=8.4e-07  Score=86.80  Aligned_cols=67  Identities=24%  Similarity=0.296  Sum_probs=47.0

Q ss_pred             CcceEEEEeCCCCCChHHHHHHHhCCC--CCCC-------------Cc----eec------CCCCCceeEeeeeEEecCC
Q psy15351        166 VYNTTVMVVGVPNVGKSSIINALRSSH--MKKG-------------KA----VPV------GPKAGVTRSVMSQVKISEK  220 (352)
Q Consensus       166 ~~~~~v~i~G~pnvGKStliN~l~~~~--~~~~-------------~~----~~~------~~~pg~T~~~~~~~~~~~~  220 (352)
                      ++.++|+++|.+|+|||||+|+|+...  +...             +.    +.+      ...+|+|++.........+
T Consensus         4 k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~~   83 (425)
T PRK12317          4 KPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETDK   83 (425)
T ss_pred             CCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecCC
Confidence            467899999999999999999998421  0000             00    001      1269999998765554556


Q ss_pred             CcEEEEeCCCCC
Q psy15351        221 PLIYILDTPGIS  232 (352)
Q Consensus       221 ~~~~l~DtPGi~  232 (352)
                      ..+.|+||||..
T Consensus        84 ~~i~liDtpG~~   95 (425)
T PRK12317         84 YYFTIVDCPGHR   95 (425)
T ss_pred             eEEEEEECCCcc
Confidence            689999999964

>cd01868 Rab11_like Rab11-like

Probab=98.30  E-value=1.5e-06  Score=73.21  Aligned_cols=59  Identities=22%  Similarity=0.332  Sum_probs=36.7

Q ss_pred             eEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCC-CcEEEEeCCCCC
Q psy15351        169 TTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEK-PLIYILDTPGIS  232 (352)
Q Consensus       169 ~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~-~~~~l~DtPGi~  232 (352)
                      ++|+++|.||||||||+|++.+..    ......+..|++.... .+...+. -.+.++||||..
T Consensus         4 ~ki~vvG~~~~GKSsli~~l~~~~----~~~~~~~t~~~~~~~~-~~~~~~~~~~~~l~D~~g~~   63 (165)
T cd01868           4 FKIVLIGDSGVGKSNLLSRFTRNE----FNLDSKSTIGVEFATR-SIQIDGKTIKAQIWDTAGQE   63 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCC----CCCCCCCccceEEEEE-EEEECCEEEEEEEEeCCChH
Confidence            689999999999999999998631    1122233333322211 2222221 257899999964

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP

>cd04119 RJL RJL (RabJ-Like) subfamily

Probab=98.29  E-value=1.6e-06  Score=72.87  Aligned_cols=59  Identities=24%  Similarity=0.377  Sum_probs=35.3

Q ss_pred             eEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecC-CCcEEEEeCCCCC
Q psy15351        169 TTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISE-KPLIYILDTPGIS  232 (352)
Q Consensus       169 ~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~-~~~~~l~DtPGi~  232 (352)
                      ++|+++|.||||||||+|++++...    .....+..|.+... ..+...+ .-.+.++||||..
T Consensus         1 ~ki~~vG~~~vGKTsli~~l~~~~~----~~~~~~t~~~~~~~-~~~~~~~~~~~l~i~Dt~G~~   60 (168)
T cd04119           1 IKVISMGNSGVGKSCIIKRYCEGRF----VSKYLPTIGIDYGV-KKVSVRNKEVRVNFFDLSGHP   60 (168)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCC----CCCCCCccceeEEE-EEEEECCeEEEEEEEECCccH
Confidence            4799999999999999999997321    11222222222111 1122211 1257899999963

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.

>PRK05433 GTP-binding protein LepA; Provisional

Probab=98.29  E-value=6.5e-06  Score=83.63  Aligned_cols=98  Identities=13%  Similarity=0.170  Sum_probs=67.3

Q ss_pred             HHHHHHHHhhccCEEEEEEcCCCCCCCcCHHHHH-HHhCCCCEEEEEEcccCCCccchHHHHHHHHh-hcCCCCcEEEee
Q psy15351          4 GLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQ-SVQNIRPMVLVLNKRDLINSKHESLIEEKVRK-EQSHISEVIFTN   81 (352)
Q Consensus         4 ~~~~~~~~i~~aD~vl~VvDar~p~~~~~~~l~~-~l~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~-~~~~~~~v~~iS   81 (352)
                      ....+...+..+|.+|+|+|++.+.......... +...+.|+++|+||+|+..... ....+.+.+ .+....+++++|
T Consensus        87 F~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~~~~lpiIvViNKiDl~~a~~-~~v~~ei~~~lg~~~~~vi~iS  165 (600)
T PRK05433         87 FSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENDLEIIPVLNKIDLPAADP-ERVKQEIEDVIGIDASDAVLVS  165 (600)
T ss_pred             HHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCcccH-HHHHHHHHHHhCCCcceEEEEe
Confidence            3445667889999999999999876543322222 2225789999999999865432 222222322 233322589999


Q ss_pred             cCCCCCCCHHHHHHHHHHHhhhc
Q psy15351         82 CRNPNCKGVQKILPTLQHISDNM  104 (352)
Q Consensus        82 a~~~~~~gi~~L~~~i~~~~~~~  104 (352)
                      |+++  .|+.+|+++|.+.++..
T Consensus       166 AktG--~GI~~Ll~~I~~~lp~P  186 (600)
T PRK05433        166 AKTG--IGIEEVLEAIVERIPPP  186 (600)
T ss_pred             cCCC--CCHHHHHHHHHHhCccc
Confidence            9999  99999999998887643

>cd00881 GTP_translation_factor GTP translation factor family

Probab=98.29  E-value=8.9e-07  Score=75.95  Aligned_cols=64  Identities=17%  Similarity=0.124  Sum_probs=39.3

Q ss_pred             EEEEeCCCCCChHHHHHHHhCCCCCCCCcee----------cCCCCCceeEeeeeEEecCCCcEEEEeCCCCCC
Q psy15351        170 TVMVVGVPNVGKSSIINALRSSHMKKGKAVP----------VGPKAGVTRSVMSQVKISEKPLIYILDTPGISL  233 (352)
Q Consensus       170 ~v~i~G~pnvGKStliN~l~~~~~~~~~~~~----------~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~~  233 (352)
                      +|+++|.+|+|||||+|+|.+..........          ....+|+|..............+.++||||...
T Consensus         1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~   74 (189)
T cd00881           1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHED   74 (189)
T ss_pred             CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHH
Confidence            4899999999999999999874321111000          112345555543222222344689999999753

This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.

>KOG0410|consensus

Probab=98.29  E-value=3.9e-07  Score=82.96  Aligned_cols=67  Identities=22%  Similarity=0.268  Sum_probs=47.7

Q ss_pred             ccccCcceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeee-eEEecCCCcEEEEeCCCCCCC
Q psy15351        162 HRTEVYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMS-QVKISEKPLIYILDTPGISLP  234 (352)
Q Consensus       162 ~~~~~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~-~~~~~~~~~~~l~DtPGi~~~  234 (352)
                      .+.......|++|||+|+||||||++|++..+      ...+.-+-|-++.. ......+..+.+.||-||++.
T Consensus       172 gr~~~s~pviavVGYTNaGKsTLikaLT~Aal------~p~drLFATLDpT~h~a~Lpsg~~vlltDTvGFisd  239 (410)
T KOG0410|consen  172 GREGESSPVIAVVGYTNAGKSTLIKALTKAAL------YPNDRLFATLDPTLHSAHLPSGNFVLLTDTVGFISD  239 (410)
T ss_pred             ccccCCCceEEEEeecCccHHHHHHHHHhhhc------CccchhheeccchhhhccCCCCcEEEEeechhhhhh
Confidence            34455678899999999999999999996333      33334455555432 233455667899999999974

>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases

Probab=98.28  E-value=3.6e-06  Score=70.29  Aligned_cols=88  Identities=20%  Similarity=0.130  Sum_probs=58.9

Q ss_pred             HHHhhccCEEEEEEcCCCCCCCc--CHHHHHHHh----CCCCEEEEEEcccCCCccchHHHHHHHHhh--cCCCCcEEEe
Q psy15351          9 EKHLKNVDIVIEVHDSRMPFTGR--NHLLQQSVQ----NIRPMVLVLNKRDLINSKHESLIEEKVRKE--QSHISEVIFT   80 (352)
Q Consensus         9 ~~~i~~aD~vl~VvDar~p~~~~--~~~l~~~l~----~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~--~~~~~~v~~i   80 (352)
                      ...+..+|++++|+|++.+....  ...+..+..    .+.|+++|+||+|+......++..+.+...  .....+++.+
T Consensus        61 ~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (158)
T cd00878          61 KHYYENTNGIIFVVDSSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGALSVSELIEKLGLEKILGRRWHIQPC  140 (158)
T ss_pred             HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCccccCHHHHHHhhChhhccCCcEEEEEe
Confidence            34668999999999998763211  122223222    368999999999998755444444433221  1112258899


Q ss_pred             ecCCCCCCCHHHHHHHHH
Q psy15351         81 NCRNPNCKGVQKILPTLQ   98 (352)
Q Consensus        81 Sa~~~~~~gi~~L~~~i~   98 (352)
                      ||+++  .|+++++++|.
T Consensus       141 Sa~~~--~gv~~~~~~l~  156 (158)
T cd00878         141 SAVTG--DGLDEGLDWLL  156 (158)
T ss_pred             eCCCC--CCHHHHHHHHh
Confidence            99999  99999998875

Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu

>cd04127 Rab27A Rab27a subfamily

Probab=98.27  E-value=5.9e-06  Score=70.57  Aligned_cols=89  Identities=17%  Similarity=0.092  Sum_probs=60.1

Q ss_pred             HHHHhhccCEEEEEEcCCCCCCCcCH-HHHHHHh-----CCCCEEEEEEcccCCCccc--hHHHHHHHHhhcCCCCcEEE
Q psy15351          8 IEKHLKNVDIVIEVHDSRMPFTGRNH-LLQQSVQ-----NIRPMVLVLNKRDLINSKH--ESLIEEKVRKEQSHISEVIF   79 (352)
Q Consensus         8 ~~~~i~~aD~vl~VvDar~p~~~~~~-~l~~~l~-----~~k~~ilVlNK~Dl~~~~~--~~~~~~~~~~~~~~~~~v~~   79 (352)
                      ....+.++|++++|.|+.++.+..+. .+...+.     .+.|+++|.||+|+.+...  .++..++..+.+.+   ++.
T Consensus        80 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~---~~e  156 (180)
T cd04127          80 TTAFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEEQAKALADKYGIP---YFE  156 (180)
T ss_pred             HHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccCHHHHHHHHHHcCCe---EEE
Confidence            34568899999999999875432221 1111111     2568999999999976432  23333344444554   899


Q ss_pred             eecCCCCCCCHHHHHHHHHHHh
Q psy15351         80 TNCRNPNCKGVQKILPTLQHIS  101 (352)
Q Consensus        80 iSa~~~~~~gi~~L~~~i~~~~  101 (352)
                      +||+++  .|++++++.+.+.+
T Consensus       157 ~Sak~~--~~v~~l~~~l~~~~  176 (180)
T cd04127         157 TSAATG--TNVEKAVERLLDLV  176 (180)
T ss_pred             EeCCCC--CCHHHHHHHHHHHH
Confidence            999999  99999999987643

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated

>PLN00223 ADP-ribosylation factor; Provisional

Probab=98.27  E-value=4.7e-06  Score=71.72  Aligned_cols=90  Identities=19%  Similarity=0.106  Sum_probs=58.1

Q ss_pred             HHhhccCEEEEEEcCCCCCCCc--CHHHHHHHh----CCCCEEEEEEcccCCCccchHHHHHHHHhhcCCCC--cEEEee
Q psy15351         10 KHLKNVDIVIEVHDSRMPFTGR--NHLLQQSVQ----NIRPMVLVLNKRDLINSKHESLIEEKVRKEQSHIS--EVIFTN   81 (352)
Q Consensus        10 ~~i~~aD~vl~VvDar~p~~~~--~~~l~~~l~----~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~--~v~~iS   81 (352)
                      ..+..+|++|+|+|+.++.+..  ..++.+++.    .+.|+++|+||+|+......++..+.+.-......  .++.+|
T Consensus        80 ~~~~~a~~iI~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~l~l~~~~~~~~~~~~~S  159 (181)
T PLN00223         80 HYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTC  159 (181)
T ss_pred             HHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCCCCHHHHHHHhCccccCCCceEEEecc
Confidence            3579999999999998753221  123333332    36899999999999765443444433311111001  144589


Q ss_pred             cCCCCCCCHHHHHHHHHHHh
Q psy15351         82 CRNPNCKGVQKILPTLQHIS  101 (352)
Q Consensus        82 a~~~~~~gi~~L~~~i~~~~  101 (352)
                      |+++  +|+.+++++|.+.+
T Consensus       160 a~~g--~gv~e~~~~l~~~~  177 (181)
T PLN00223        160 ATSG--EGLYEGLDWLSNNI  177 (181)
T ss_pred             CCCC--CCHHHHHHHHHHHH
Confidence            9999  99999999987654

>TIGR02836 spore_IV_A stage IV sporulation protein A

Probab=98.27  E-value=1.6e-06  Score=82.15  Aligned_cols=69  Identities=20%  Similarity=0.183  Sum_probs=50.1

Q ss_pred             cCcceEEEEeCCCCCChHHHHHHHhCCCCCCCCce-----------ecCCCCC---ceeEeee----eEEecCC----Cc
Q psy15351        165 EVYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAV-----------PVGPKAG---VTRSVMS----QVKISEK----PL  222 (352)
Q Consensus       165 ~~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~-----------~~~~~pg---~T~~~~~----~~~~~~~----~~  222 (352)
                      .+..+.|+++|..|+|||||||++.+.-+-. ..+           .+++.+|   ||.++..    .+.+...    ..
T Consensus        14 T~G~IyIGvvGpvrtGKSTfIn~fm~q~VlP-~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~   92 (492)
T TIGR02836        14 TQGDIYIGVVGPVRTGKSTFIKKFMELLVLP-NISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFK   92 (492)
T ss_pred             hCCcEEEEEEcCCCCChHHHHHHHHhhhccc-cccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCccc
Confidence            3567999999999999999999999841100 223           6888999   8887652    2222222    46


Q ss_pred             EEEEeCCCCCCC
Q psy15351        223 IYILDTPGISLP  234 (352)
Q Consensus       223 ~~l~DtPGi~~~  234 (352)
                      +.|+||+|+...
T Consensus        93 VrlIDcvG~~v~  104 (492)
T TIGR02836        93 VRLVDCVGYTVK  104 (492)
T ss_pred             EEEEECCCcccC
Confidence            999999999875

A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.

>cd04101 RabL4 RabL4 (Rab-like4) subfamily

Probab=98.27  E-value=5.6e-06  Score=69.48  Aligned_cols=86  Identities=19%  Similarity=0.116  Sum_probs=58.0

Q ss_pred             HHHHhhccCEEEEEEcCCCCCCCcCHHHHHHH---h---CCCCEEEEEEcccCCCccchHH-HHHHHH-hhcCCCCcEEE
Q psy15351          8 IEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSV---Q---NIRPMVLVLNKRDLINSKHESL-IEEKVR-KEQSHISEVIF   79 (352)
Q Consensus         8 ~~~~i~~aD~vl~VvDar~p~~~~~~~l~~~l---~---~~k~~ilVlNK~Dl~~~~~~~~-~~~~~~-~~~~~~~~v~~   79 (352)
                      ....+.++|++++|+|.+++.+..  .+..++   .   .+.|+++|.||+|+.+...... ..+.+. ..+..   ++.
T Consensus        69 ~~~~~~~~d~ii~v~d~~~~~s~~--~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~---~~~  143 (164)
T cd04101          69 VSNYWESPSVFILVYDVSNKASFE--NCSRWVNKVRTASKHMPGVLVGNKMDLADKAEVTDAQAQAFAQANQLK---FFK  143 (164)
T ss_pred             HHHHhCCCCEEEEEEECcCHHHHH--HHHHHHHHHHHhCCCCCEEEEEECcccccccCCCHHHHHHHHHHcCCe---EEE
Confidence            356778999999999998653221  122222   1   3589999999999976543221 112222 23443   889


Q ss_pred             eecCCCCCCCHHHHHHHHHHH
Q psy15351         80 TNCRNPNCKGVQKILPTLQHI  100 (352)
Q Consensus        80 iSa~~~~~~gi~~L~~~i~~~  100 (352)
                      +||+++  .|++++++.+.+.
T Consensus       144 ~Sa~~~--~gi~~l~~~l~~~  162 (164)
T cd04101         144 TSALRG--VGYEEPFESLARA  162 (164)
T ss_pred             EeCCCC--CChHHHHHHHHHH
Confidence            999999  9999999888654

RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.

>cd04155 Arl3 Arl3 subfamily

Probab=98.27  E-value=2e-06  Score=72.94  Aligned_cols=58  Identities=19%  Similarity=0.377  Sum_probs=40.6

Q ss_pred             CcceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCCcEEEEeCCCCC
Q psy15351        166 VYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGIS  232 (352)
Q Consensus       166 ~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~  232 (352)
                      ...++|+++|.+|||||||+|++.+.     ......+..|.+....   .. .+..+.++||||..
T Consensus        12 ~~~~~v~i~G~~g~GKStLl~~l~~~-----~~~~~~~t~g~~~~~i---~~-~~~~~~~~D~~G~~   69 (173)
T cd04155          12 SEEPRILILGLDNAGKTTILKQLASE-----DISHITPTQGFNIKTV---QS-DGFKLNVWDIGGQR   69 (173)
T ss_pred             CCccEEEEEccCCCCHHHHHHHHhcC-----CCcccCCCCCcceEEE---EE-CCEEEEEEECCCCH
Confidence            44789999999999999999999973     2223444555444322   12 24568899999964

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.

>cd00879 Sar1 Sar1 subfamily

Probab=98.27  E-value=3.6e-06  Score=72.70  Aligned_cols=90  Identities=17%  Similarity=0.147  Sum_probs=59.4

Q ss_pred             HHHhhccCEEEEEEcCCCCCCC--cCHHHHHHHh----CCCCEEEEEEcccCCCccchHHHHHHHHhhc-----------
Q psy15351          9 EKHLKNVDIVIEVHDSRMPFTG--RNHLLQQSVQ----NIRPMVLVLNKRDLINSKHESLIEEKVRKEQ-----------   71 (352)
Q Consensus         9 ~~~i~~aD~vl~VvDar~p~~~--~~~~l~~~l~----~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~-----------   71 (352)
                      ...+..+|.+++|+|++++-+.  ....+...++    .+.|+++|+||+|+......++..+++....           
T Consensus        81 ~~~~~~ad~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (190)
T cd00879          81 KDYFPEVDGIVFLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPGAVSEEELRQALGLYGTTTGKGVSLKV  160 (190)
T ss_pred             HHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCCCcCHHHHHHHhCcccccccccccccc
Confidence            4567899999999999865221  1123333332    3589999999999975433344444442110           


Q ss_pred             --CCCCcEEEeecCCCCCCCHHHHHHHHHHH
Q psy15351         72 --SHISEVIFTNCRNPNCKGVQKILPTLQHI  100 (352)
Q Consensus        72 --~~~~~v~~iSa~~~~~~gi~~L~~~i~~~  100 (352)
                        ....+++.+||+++  +|+++++++|.+.
T Consensus       161 ~~~~~~~~~~~Sa~~~--~gv~e~~~~l~~~  189 (190)
T cd00879         161 SGIRPIEVFMCSVVKR--QGYGEAFRWLSQY  189 (190)
T ss_pred             cCceeEEEEEeEecCC--CChHHHHHHHHhh
Confidence              01114788999999  9999999998754

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.

>cd01892 Miro2 Miro2 subfamily

Probab=98.26  E-value=2.4e-06  Score=72.61  Aligned_cols=88  Identities=17%  Similarity=0.122  Sum_probs=57.2

Q ss_pred             HHhhccCEEEEEEcCCCCCCCcC-HHHHHHHh--CCCCEEEEEEcccCCCccch--HHHHHHHHhhcCCCCcEEEeecCC
Q psy15351         10 KHLKNVDIVIEVHDSRMPFTGRN-HLLQQSVQ--NIRPMVLVLNKRDLINSKHE--SLIEEKVRKEQSHISEVIFTNCRN   84 (352)
Q Consensus        10 ~~i~~aD~vl~VvDar~p~~~~~-~~l~~~l~--~~k~~ilVlNK~Dl~~~~~~--~~~~~~~~~~~~~~~~v~~iSa~~   84 (352)
                      ..+.++|++++|+|+.++.+... ..+.+.+.  .+.|+++|+||+|+.+....  .+..++.+..+..  .++.+||++
T Consensus        73 ~~~~~~d~~llv~d~~~~~s~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~--~~~~~Sa~~  150 (169)
T cd01892          73 AELAACDVACLVYDSSDPKSFSYCAEVYKKYFMLGEIPCLFVAAKADLDEQQQRYEVQPDEFCRKLGLP--PPLHFSSKL  150 (169)
T ss_pred             hhhhcCCEEEEEEeCCCHHHHHHHHHHHHHhccCCCCeEEEEEEcccccccccccccCHHHHHHHcCCC--CCEEEEecc
Confidence            34689999999999987632111 12222221  36899999999999754321  1112222233432  368899999


Q ss_pred             CCCCCHHHHHHHHHHHh
Q psy15351         85 PNCKGVQKILPTLQHIS  101 (352)
Q Consensus        85 ~~~~gi~~L~~~i~~~~  101 (352)
                      +  .|++++++.+.+.+
T Consensus       151 ~--~~v~~lf~~l~~~~  165 (169)
T cd01892         151 G--DSSNELFTKLATAA  165 (169)
T ss_pred             C--ccHHHHHHHHHHHh
Confidence            9  99999999887654

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>cd04160 Arfrp1 Arfrp1 subfamily

Probab=98.26  E-value=1.4e-06  Score=73.49  Aligned_cols=62  Identities=18%  Similarity=0.181  Sum_probs=36.7

Q ss_pred             EEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCCcEEEEeCCCCCC
Q psy15351        170 TVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISL  233 (352)
Q Consensus       170 ~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~~  233 (352)
                      +|+++|.+|||||||+|+|.+....  ........+.+|...........+..+.++||||...
T Consensus         1 ~i~~vG~~~~GKstLi~~l~~~~~~--~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~   62 (167)
T cd04160           1 SVLILGLDNAGKTTFLEQLKTLFSK--YKGLPPSKITPTVGLNIGTIEVGNARLKFWDLGGQES   62 (167)
T ss_pred             CEEEEecCCCCHHHHHHHHhhhccc--ccCCcccccCCccccceEEEEECCEEEEEEECCCChh
Confidence            4889999999999999999852110  0011112223333322222222355789999999753

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.

>cd01884 EF_Tu EF-Tu subfamily

Probab=98.26  E-value=1.5e-06  Score=75.85  Aligned_cols=65  Identities=22%  Similarity=0.282  Sum_probs=44.0

Q ss_pred             ceEEEEeCCCCCChHHHHHHHhCCCCCCC-C---------ceecCCCCCceeEeeeeEEecCCCcEEEEeCCCCC
Q psy15351        168 NTTVMVVGVPNVGKSSIINALRSSHMKKG-K---------AVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGIS  232 (352)
Q Consensus       168 ~~~v~i~G~pnvGKStliN~l~~~~~~~~-~---------~~~~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~  232 (352)
                      .++|+++|.+++|||||+++|+....... .         ........|+|.+.........+.++.|+||||..
T Consensus         2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~   76 (195)
T cd01884           2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHA   76 (195)
T ss_pred             cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHH
Confidence            47899999999999999999985310000 0         00112267888887543333455679999999975

This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>smart00175 RAB Rab subfamily of small GTPases

Probab=98.25  E-value=6.2e-06  Score=69.00  Aligned_cols=88  Identities=15%  Similarity=0.044  Sum_probs=62.1

Q ss_pred             HHHHhhccCEEEEEEcCCCCCCCcCHHHHHHH----h---CCCCEEEEEEcccCCCccc--hHHHHHHHHhhcCCCCcEE
Q psy15351          8 IEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSV----Q---NIRPMVLVLNKRDLINSKH--ESLIEEKVRKEQSHISEVI   78 (352)
Q Consensus         8 ~~~~i~~aD~vl~VvDar~p~~~~~~~l~~~l----~---~~k~~ilVlNK~Dl~~~~~--~~~~~~~~~~~~~~~~~v~   78 (352)
                      ....+..+|++++|+|++++.+..  .+..++    .   .+.|+++|+||+|+.....  .+...++.++.+..   ++
T Consensus        66 ~~~~~~~~d~~ilv~d~~~~~s~~--~~~~~l~~~~~~~~~~~pivvv~nK~D~~~~~~~~~~~~~~~~~~~~~~---~~  140 (164)
T smart00175       66 TSSYYRGAVGALLVYDITNRESFE--NLKNWLKELREYADPNVVIMLVGNKSDLEDQRQVSREEAEAFAEEHGLP---FF  140 (164)
T ss_pred             HHHHhCCCCEEEEEEECCCHHHHH--HHHHHHHHHHHhCCCCCeEEEEEEchhcccccCCCHHHHHHHHHHcCCe---EE
Confidence            455678899999999998764332  222222    1   3589999999999876432  23344444444554   99


Q ss_pred             EeecCCCCCCCHHHHHHHHHHHhh
Q psy15351         79 FTNCRNPNCKGVQKILPTLQHISD  102 (352)
Q Consensus        79 ~iSa~~~~~~gi~~L~~~i~~~~~  102 (352)
                      .+|++++  .|++++++.+.+.+.
T Consensus       141 e~Sa~~~--~~i~~l~~~i~~~~~  162 (164)
T smart00175      141 ETSAKTN--TNVEEAFEELAREIL  162 (164)
T ss_pred             EEeCCCC--CCHHHHHHHHHHHHh
Confidence            9999999  999999999887653

Rab GTPases are implicated in vesicle trafficking.

>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily

Probab=98.24  E-value=2.7e-06  Score=71.35  Aligned_cols=59  Identities=27%  Similarity=0.288  Sum_probs=37.1

Q ss_pred             ceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeee-eEEecCC-CcEEEEeCCCCCC
Q psy15351        168 NTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMS-QVKISEK-PLIYILDTPGISL  233 (352)
Q Consensus       168 ~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~-~~~~~~~-~~~~l~DtPGi~~  233 (352)
                      .++|+++|.||||||||+|++.+..       .++..++++..... .....+. ..+.++||||...
T Consensus         2 ~~ki~i~G~~~~GKtsl~~~~~~~~-------~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~   62 (164)
T cd04145           2 TYKLVVVGGGGVGKSALTIQFIQSY-------FVTDYDPTIEDSYTKQCEIDGQWAILDILDTAGQEE   62 (164)
T ss_pred             ceEEEEECCCCCcHHHHHHHHHhCC-------CCcccCCCccceEEEEEEECCEEEEEEEEECCCCcc
Confidence            3789999999999999999998621       12333444332211 1112211 2477899999653

This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali

>cd01876 YihA_EngB The YihA (EngB) subfamily

Probab=98.24  E-value=1.4e-05  Score=66.75  Aligned_cols=89  Identities=17%  Similarity=0.192  Sum_probs=61.3

Q ss_pred             HHhhccCEEEEEEcCCCCCCCcCHHHHHHHh-CCCCEEEEEEcccCCCccchHHHHHHHHhh---cCCCCcEEEeecCCC
Q psy15351         10 KHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQ-NIRPMVLVLNKRDLINSKHESLIEEKVRKE---QSHISEVIFTNCRNP   85 (352)
Q Consensus        10 ~~i~~aD~vl~VvDar~p~~~~~~~l~~~l~-~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~---~~~~~~v~~iSa~~~   85 (352)
                      ...++++.+++|+|...+.......+.+++. .+.|+++|+||+|+..+.........+...   .....+++++||+++
T Consensus        77 ~~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~~~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Sa~~~  156 (170)
T cd01876          77 ENRENLKGVVLLIDSRHGPTEIDLEMLDWLEELGIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPIILFSSLKG  156 (170)
T ss_pred             HhChhhhEEEEEEEcCcCCCHhHHHHHHHHHHcCCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceEEEecCCC
Confidence            3445678999999998776555555556665 568999999999998665433222222111   111225899999999


Q ss_pred             CCCCHHHHHHHHHHH
Q psy15351         86 NCKGVQKILPTLQHI  100 (352)
Q Consensus        86 ~~~gi~~L~~~i~~~  100 (352)
                        .|+.+++++|.++
T Consensus       157 --~~~~~l~~~l~~~  169 (170)
T cd01876         157 --QGIDELRALIEKW  169 (170)
T ss_pred             --CCHHHHHHHHHHh
Confidence              9999999998764

This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.

>cd04113 Rab4 Rab4 subfamily

Probab=98.23  E-value=2.3e-06  Score=71.73  Aligned_cols=59  Identities=19%  Similarity=0.286  Sum_probs=35.6

Q ss_pred             eEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCC-CcEEEEeCCCCC
Q psy15351        169 TTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEK-PLIYILDTPGIS  232 (352)
Q Consensus       169 ~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~-~~~~l~DtPGi~  232 (352)
                      ++|+++|.+|||||||+|+|.+..    ......+..+...... .+..... -.+.++||||..
T Consensus         1 ~ki~v~G~~~vGKTsli~~l~~~~----~~~~~~~~~~~~~~~~-~~~~~~~~~~l~l~D~~G~~   60 (161)
T cd04113           1 FKFIIIGSSGTGKSCLLHRFVENK----FKEDSQHTIGVEFGSK-IIRVGGKRVKLQIWDTAGQE   60 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCC----CCCCCCCceeeeEEEE-EEEECCEEEEEEEEECcchH
Confidence            479999999999999999998631    1122223333222211 1222221 257899999964

Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p

>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily

Probab=98.23  E-value=7.5e-06  Score=68.24  Aligned_cols=86  Identities=20%  Similarity=0.130  Sum_probs=58.0

Q ss_pred             HHhhccCEEEEEEcCCCCCCCcC--HHHHHHHh----CCCCEEEEEEcccCCCccc-hHHHHHHHHhhcCCCCcEEEeec
Q psy15351         10 KHLKNVDIVIEVHDSRMPFTGRN--HLLQQSVQ----NIRPMVLVLNKRDLINSKH-ESLIEEKVRKEQSHISEVIFTNC   82 (352)
Q Consensus        10 ~~i~~aD~vl~VvDar~p~~~~~--~~l~~~l~----~~k~~ilVlNK~Dl~~~~~-~~~~~~~~~~~~~~~~~v~~iSa   82 (352)
                      ..+..+|.+++|+|..++.+..+  ..+..+.+    .+.|+++|+||+|+..... ..+..+..+..+..   ++.+||
T Consensus        68 ~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~---~~~~Sa  144 (162)
T cd04138          68 QYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAARTVSSRQGQDLAKSYGIP---YIETSA  144 (162)
T ss_pred             HHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccceecHHHHHHHHHHhCCe---EEEecC
Confidence            46778999999999876432111  11222222    3679999999999976432 23333444444554   899999


Q ss_pred             CCCCCCCHHHHHHHHHHH
Q psy15351         83 RNPNCKGVQKILPTLQHI  100 (352)
Q Consensus        83 ~~~~~~gi~~L~~~i~~~  100 (352)
                      +++  .|++++++++.+.
T Consensus       145 ~~~--~gi~~l~~~l~~~  160 (162)
T cd04138         145 KTR--QGVEEAFYTLVRE  160 (162)
T ss_pred             CCC--CCHHHHHHHHHHH
Confidence            999  9999999888653

H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.

>cd01864 Rab19 Rab19 subfamily

Probab=98.23  E-value=1e-05  Score=68.17  Aligned_cols=88  Identities=14%  Similarity=0.072  Sum_probs=58.4

Q ss_pred             HHHHhhccCEEEEEEcCCCCCCCcC-HHHHHHH-h---CCCCEEEEEEcccCCCccc--hHHHHHHHHhhcCCCCcEEEe
Q psy15351          8 IEKHLKNVDIVIEVHDSRMPFTGRN-HLLQQSV-Q---NIRPMVLVLNKRDLINSKH--ESLIEEKVRKEQSHISEVIFT   80 (352)
Q Consensus         8 ~~~~i~~aD~vl~VvDar~p~~~~~-~~l~~~l-~---~~k~~ilVlNK~Dl~~~~~--~~~~~~~~~~~~~~~~~v~~i   80 (352)
                      ....+..+|++++|+|+.++.+... +.+...+ .   .+.|+++|.||+|+.....  .....+..+..+..  .++.+
T Consensus        69 ~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~--~~~e~  146 (165)
T cd01864          69 TQSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEEQREVLFEEACTLAEKNGML--AVLET  146 (165)
T ss_pred             HHHHhccCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCc--EEEEE
Confidence            3456788999999999987643221 1222222 1   3578999999999975532  12223333333332  48999


Q ss_pred             ecCCCCCCCHHHHHHHHHH
Q psy15351         81 NCRNPNCKGVQKILPTLQH   99 (352)
Q Consensus        81 Sa~~~~~~gi~~L~~~i~~   99 (352)
                      ||+++  .|++++++.+.+
T Consensus       147 Sa~~~--~~v~~~~~~l~~  163 (165)
T cd01864         147 SAKES--QNVEEAFLLMAT  163 (165)
T ss_pred             ECCCC--CCHHHHHHHHHH
Confidence            99999  999999988764

Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04112 Rab26 Rab26 subfamily

Probab=98.23  E-value=8.6e-06  Score=70.63  Aligned_cols=91  Identities=10%  Similarity=0.047  Sum_probs=60.7

Q ss_pred             HHHhhccCEEEEEEcCCCCCCCcC-HHHHHHHh----CCCCEEEEEEcccCCCccc--hHHHHHHHHhhcCCCCcEEEee
Q psy15351          9 EKHLKNVDIVIEVHDSRMPFTGRN-HLLQQSVQ----NIRPMVLVLNKRDLINSKH--ESLIEEKVRKEQSHISEVIFTN   81 (352)
Q Consensus         9 ~~~i~~aD~vl~VvDar~p~~~~~-~~l~~~l~----~~k~~ilVlNK~Dl~~~~~--~~~~~~~~~~~~~~~~~v~~iS   81 (352)
                      ...+..+|++++|+|+.++.+..+ ..+...+.    .+.|+++|+||+|+..+..  ..+..+.....+.+   ++.+|
T Consensus        68 ~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~l~~~~~~~---~~e~S  144 (191)
T cd04112          68 HAYYRDAHALLLLYDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMSGERVVKREDGERLAKEYGVP---FMETS  144 (191)
T ss_pred             HHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccchhccccCHHHHHHHHHHcCCe---EEEEe
Confidence            346788999999999987532211 11111111    3679999999999975332  22333333333444   89999


Q ss_pred             cCCCCCCCHHHHHHHHHHHhhhc
Q psy15351         82 CRNPNCKGVQKILPTLQHISDNM  104 (352)
Q Consensus        82 a~~~~~~gi~~L~~~i~~~~~~~  104 (352)
                      |+++  .|+++++.+|.+.+...
T Consensus       145 a~~~--~~v~~l~~~l~~~~~~~  165 (191)
T cd04112         145 AKTG--LNVELAFTAVAKELKHR  165 (191)
T ss_pred             CCCC--CCHHHHHHHHHHHHHHh
Confidence            9999  99999999998776543

First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd01865 Rab3 Rab3 subfamily

Probab=98.23  E-value=1.1e-05  Score=68.10  Aligned_cols=87  Identities=13%  Similarity=0.038  Sum_probs=59.7

Q ss_pred             HHHhhccCEEEEEEcCCCCCCCcCHHHHHHH---h----CCCCEEEEEEcccCCCccc--hHHHHHHHHhhcCCCCcEEE
Q psy15351          9 EKHLKNVDIVIEVHDSRMPFTGRNHLLQQSV---Q----NIRPMVLVLNKRDLINSKH--ESLIEEKVRKEQSHISEVIF   79 (352)
Q Consensus         9 ~~~i~~aD~vl~VvDar~p~~~~~~~l~~~l---~----~~k~~ilVlNK~Dl~~~~~--~~~~~~~~~~~~~~~~~v~~   79 (352)
                      ...+..+|++++|+|..++.+.  ..+.+++   .    ...|+++|.||+|+.+...  .+...+.....+.+   ++.
T Consensus        68 ~~~~~~~~~~l~v~d~~~~~s~--~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~---~~~  142 (165)
T cd01865          68 TAYYRGAMGFILMYDITNEESF--NAVQDWSTQIKTYSWDNAQVILVGNKCDMEDERVVSSERGRQLADQLGFE---FFE  142 (165)
T ss_pred             HHHccCCcEEEEEEECCCHHHH--HHHHHHHHHHHHhCCCCCCEEEEEECcccCcccccCHHHHHHHHHHcCCE---EEE
Confidence            3567899999999999765322  1222222   1    3578999999999976532  22333333334454   899


Q ss_pred             eecCCCCCCCHHHHHHHHHHHhh
Q psy15351         80 TNCRNPNCKGVQKILPTLQHISD  102 (352)
Q Consensus        80 iSa~~~~~~gi~~L~~~i~~~~~  102 (352)
                      +||+++  .|++++++.+.+.+.
T Consensus       143 ~Sa~~~--~gv~~l~~~l~~~~~  163 (165)
T cd01865         143 ASAKEN--INVKQVFERLVDIIC  163 (165)
T ss_pred             EECCCC--CCHHHHHHHHHHHHH
Confidence            999999  999999999876553

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot

>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=98.23  E-value=6.6e-06  Score=69.64  Aligned_cols=88  Identities=17%  Similarity=0.047  Sum_probs=58.7

Q ss_pred             HHhhccCEEEEEEcCCCCCCCcC-HHHHHHHh---CCCCEEEEEEcccCCCccchHHHHHHHHhhcCCCCcEEEeecCCC
Q psy15351         10 KHLKNVDIVIEVHDSRMPFTGRN-HLLQQSVQ---NIRPMVLVLNKRDLINSKHESLIEEKVRKEQSHISEVIFTNCRNP   85 (352)
Q Consensus        10 ~~i~~aD~vl~VvDar~p~~~~~-~~l~~~l~---~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~v~~iSa~~~   85 (352)
                      .....+|++|+|+|..++.+... ..+...+.   .+.|+++|.||+|+..........++.+..+.   +++.+||+++
T Consensus        68 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~---~~~e~Sa~~~  144 (166)
T cd00877          68 GYYIGGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCGNIPIVLCGNKVDIKDRKVKAKQITFHRKKNL---QYYEISAKSN  144 (166)
T ss_pred             HHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhcccccCCHHHHHHHHHcCC---EEEEEeCCCC
Confidence            35578999999999987643322 11111121   37999999999999744322222233323333   4899999999


Q ss_pred             CCCCHHHHHHHHHHHhh
Q psy15351         86 NCKGVQKILPTLQHISD  102 (352)
Q Consensus        86 ~~~gi~~L~~~i~~~~~  102 (352)
                        .|++++++++.+.+.
T Consensus       145 --~~v~~~f~~l~~~~~  159 (166)
T cd00877         145 --YNFEKPFLWLARKLL  159 (166)
T ss_pred             --CChHHHHHHHHHHHH
Confidence              999999999876554

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is

>TIGR02034 CysN sulfate adenylyltransferase, large subunit

Probab=98.22  E-value=9.4e-06  Score=78.86  Aligned_cols=88  Identities=16%  Similarity=0.137  Sum_probs=60.0

Q ss_pred             hHHHHHHHHhhccCEEEEEEcCCCCCCCcCHHHHHHHh--CCCCEEEEEEcccCCCccc--hHHHHH----HHHhhcCCC
Q psy15351          3 RGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQ--NIRPMVLVLNKRDLINSKH--ESLIEE----KVRKEQSHI   74 (352)
Q Consensus         3 ~~~~~~~~~i~~aD~vl~VvDar~p~~~~~~~l~~~l~--~~k~~ilVlNK~Dl~~~~~--~~~~~~----~~~~~~~~~   74 (352)
                      +..+.+...+..+|++++|+|++.++.....+...++.  ..+++++++||+|+.+.+.  .++..+    +++..+...
T Consensus        92 ~f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~~~~~~~~~~~iivviNK~D~~~~~~~~~~~i~~~~~~~~~~~~~~~  171 (406)
T TIGR02034        92 QYTRNMATGASTADLAVLLVDARKGVLEQTRRHSYIASLLGIRHVVLAVNKMDLVDYDEEVFENIKKDYLAFAEQLGFRD  171 (406)
T ss_pred             HHHHHHHHHHhhCCEEEEEEECCCCCccccHHHHHHHHHcCCCcEEEEEEecccccchHHHHHHHHHHHHHHHHHcCCCC
Confidence            45667778899999999999999887766655444443  3456888999999985332  122222    223333322


Q ss_pred             CcEEEeecCCCCCCCHHH
Q psy15351         75 SEVIFTNCRNPNCKGVQK   92 (352)
Q Consensus        75 ~~v~~iSa~~~~~~gi~~   92 (352)
                      .+++++||+++  .|+.+
T Consensus       172 ~~iipiSA~~g--~ni~~  187 (406)
T TIGR02034       172 VTFIPLSALKG--DNVVS  187 (406)
T ss_pred             ccEEEeecccC--CCCcc
Confidence            25899999999  88875

Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).

>smart00175 RAB Rab subfamily of small GTPases

Probab=98.22  E-value=3.7e-06  Score=70.40  Aligned_cols=57  Identities=23%  Similarity=0.366  Sum_probs=34.6

Q ss_pred             eEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEee-eeEEecCC-CcEEEEeCCCC
Q psy15351        169 TTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVM-SQVKISEK-PLIYILDTPGI  231 (352)
Q Consensus       169 ~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~-~~~~~~~~-~~~~l~DtPGi  231 (352)
                      ++|+++|.||+|||||+|++.+.     . ......+..+.+.. ..+...+. ..+.++||||.
T Consensus         1 ~kv~v~G~~~~GKTtli~~l~~~-----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~   59 (164)
T smart00175        1 FKIILIGDSGVGKSSLLSRFTDG-----K-FSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQ   59 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcC-----C-CCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCh
Confidence            47999999999999999999863     1 11122222222211 12222221 25789999995

Rab GTPases are implicated in vesicle trafficking.

>cd04139 RalA_RalB RalA/RalB subfamily

Probab=98.22  E-value=1.1e-05  Score=67.55  Aligned_cols=88  Identities=16%  Similarity=0.102  Sum_probs=60.4

Q ss_pred             HHHhhccCEEEEEEcCCCCCCCc--CHHHHHHHh----CCCCEEEEEEcccCCCcc--chHHHHHHHHhhcCCCCcEEEe
Q psy15351          9 EKHLKNVDIVIEVHDSRMPFTGR--NHLLQQSVQ----NIRPMVLVLNKRDLINSK--HESLIEEKVRKEQSHISEVIFT   80 (352)
Q Consensus         9 ~~~i~~aD~vl~VvDar~p~~~~--~~~l~~~l~----~~k~~ilVlNK~Dl~~~~--~~~~~~~~~~~~~~~~~~v~~i   80 (352)
                      ...+..+|.+++|+|..++-+..  ...+..+..    .+.|+++|+||+|+.+..  ......+...+.+.+   ++.+
T Consensus        66 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~~~~~~~~~~---~~~~  142 (164)
T cd04139          66 DNYHRSGEGFLLVFSITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAANLARQWGVP---YVET  142 (164)
T ss_pred             HHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCe---EEEe
Confidence            34778899999999988653221  122223332    368999999999997632  223333444444554   9999


Q ss_pred             ecCCCCCCCHHHHHHHHHHHh
Q psy15351         81 NCRNPNCKGVQKILPTLQHIS  101 (352)
Q Consensus        81 Sa~~~~~~gi~~L~~~i~~~~  101 (352)
                      ||+++  .|++++++.+.+.+
T Consensus       143 Sa~~~--~gi~~l~~~l~~~~  161 (164)
T cd04139         143 SAKTR--QNVEKAFYDLVREI  161 (164)
T ss_pred             eCCCC--CCHHHHHHHHHHHH
Confidence            99999  99999999887654

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo

>cd01862 Rab7 Rab7 subfamily

Probab=98.22  E-value=1.2e-05  Score=67.87  Aligned_cols=91  Identities=14%  Similarity=0.104  Sum_probs=61.0

Q ss_pred             HHHHhhccCEEEEEEcCCCCCCCcCH-HHH-HHHh--C-----CCCEEEEEEcccCCCcc--chHHHHHHHHhhcCCCCc
Q psy15351          8 IEKHLKNVDIVIEVHDSRMPFTGRNH-LLQ-QSVQ--N-----IRPMVLVLNKRDLINSK--HESLIEEKVRKEQSHISE   76 (352)
Q Consensus         8 ~~~~i~~aD~vl~VvDar~p~~~~~~-~l~-~~l~--~-----~k~~ilVlNK~Dl~~~~--~~~~~~~~~~~~~~~~~~   76 (352)
                      ....++++|++|+|+|+.++.+.... .+. .++.  .     +.|+++|+||+|+..+.  ..+....+.+..+..  +
T Consensus        66 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~--~  143 (172)
T cd01862          66 GVAFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQSNGNI--P  143 (172)
T ss_pred             HHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHHHHHHcCCc--e
Confidence            34567889999999999876432111 111 2222  1     68999999999998432  223333444444422  4


Q ss_pred             EEEeecCCCCCCCHHHHHHHHHHHhh
Q psy15351         77 VIFTNCRNPNCKGVQKILPTLQHISD  102 (352)
Q Consensus        77 v~~iSa~~~~~~gi~~L~~~i~~~~~  102 (352)
                      ++.+||+++  .|++++++++.+.+.
T Consensus       144 ~~~~Sa~~~--~gv~~l~~~i~~~~~  167 (172)
T cd01862         144 YFETSAKEA--INVEQAFETIARKAL  167 (172)
T ss_pred             EEEEECCCC--CCHHHHHHHHHHHHH
Confidence            999999999  999999999876544

Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-

>PRK12736 elongation factor Tu; Reviewed

Probab=98.22  E-value=1.1e-05  Score=78.02  Aligned_cols=100  Identities=14%  Similarity=0.057  Sum_probs=68.3

Q ss_pred             hHHHHHHHHhhccCEEEEEEcCCCCCCCcCHHHHHHHh-CCCC-EEEEEEcccCCCccchH-----HHHHHHHhhcCC--
Q psy15351          3 RGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQ-NIRP-MVLVLNKRDLINSKHES-----LIEEKVRKEQSH--   73 (352)
Q Consensus         3 ~~~~~~~~~i~~aD~vl~VvDar~p~~~~~~~l~~~l~-~~k~-~ilVlNK~Dl~~~~~~~-----~~~~~~~~~~~~--   73 (352)
                      +.+.++...+..+|++++|+|++.++.....++..++. .+.| +++++||+|+++.+...     +..++++..+..  
T Consensus        87 ~f~~~~~~~~~~~d~~llVvd~~~g~~~~t~~~~~~~~~~g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~  166 (394)
T PRK12736         87 DYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYLVVFLNKVDLVDDEELLELVEMEVRELLSEYDFPGD  166 (394)
T ss_pred             HHHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCEEEEEEEecCCcchHHHHHHHHHHHHHHHHHhCCCcC
Confidence            44667778889999999999999877666555555554 5777 57889999998543321     233334333431  


Q ss_pred             CCcEEEeecCCCC------CCCHHHHHHHHHHHhh
Q psy15351         74 ISEVIFTNCRNPN------CKGVQKILPTLQHISD  102 (352)
Q Consensus        74 ~~~v~~iSa~~~~------~~gi~~L~~~i~~~~~  102 (352)
                      ..+++++||.++.      ..++..|++.+.+.++
T Consensus       167 ~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~lp  201 (394)
T PRK12736        167 DIPVIRGSALKALEGDPKWEDAIMELMDAVDEYIP  201 (394)
T ss_pred             CccEEEeeccccccCCCcchhhHHHHHHHHHHhCC
Confidence            2368999999861      0157788888887765

>TIGR00484 EF-G translation elongation factor EF-G

Probab=98.22  E-value=4.4e-06  Score=86.54  Aligned_cols=67  Identities=18%  Similarity=0.123  Sum_probs=45.5

Q ss_pred             ceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecC------------CCCCceeEeeeeEEecCCCcEEEEeCCCCCCC
Q psy15351        168 NTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVG------------PKAGVTRSVMSQVKISEKPLIYILDTPGISLP  234 (352)
Q Consensus       168 ~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~------------~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~~~  234 (352)
                      -.+|+++|.+|+|||||+|+|....-...+...+.            ...|+|.+.........+.++.++||||....
T Consensus        10 irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~~~~   88 (689)
T TIGR00484        10 FRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGHVDF   88 (689)
T ss_pred             ccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCCcch
Confidence            35799999999999999999974210000111111            15788887665444556678999999999753

After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.

>cd01862 Rab7 Rab7 subfamily

Probab=98.21  E-value=2.8e-06  Score=71.76  Aligned_cols=59  Identities=24%  Similarity=0.380  Sum_probs=34.7

Q ss_pred             eEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCC-CcEEEEeCCCCC
Q psy15351        169 TTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEK-PLIYILDTPGIS  232 (352)
Q Consensus       169 ~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~-~~~~l~DtPGi~  232 (352)
                      ++|+++|.+|||||||+|++.+...    ........|.+... ..+...+. -.+.++||||..
T Consensus         1 ~ki~viG~~~~GKSsl~~~l~~~~~----~~~~~~t~~~~~~~-~~~~~~~~~~~~~~~D~~g~~   60 (172)
T cd01862           1 LKVIILGDSGVGKTSLMNQYVNKKF----SNQYKATIGADFLT-KEVTVDDKLVTLQIWDTAGQE   60 (172)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCC----CcCcCCccceEEEE-EEEEECCEEEEEEEEeCCChH
Confidence            4799999999999999999986321    11112222322111 11222221 146689999963

Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-

>cd04154 Arl2 Arl2 subfamily

Probab=98.21  E-value=3.4e-06  Score=71.81  Aligned_cols=57  Identities=21%  Similarity=0.391  Sum_probs=39.0

Q ss_pred             cceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCCcEEEEeCCCCC
Q psy15351        167 YNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGIS  232 (352)
Q Consensus       167 ~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~  232 (352)
                      ..++|+++|.+|||||||+|++.+.     ....+.++.|.....   +.. .+..+.++||||..
T Consensus        13 ~~~kv~ivG~~~~GKTsL~~~l~~~-----~~~~~~~t~g~~~~~---~~~-~~~~l~l~D~~G~~   69 (173)
T cd04154          13 REMRILILGLDNAGKTTILKKLLGE-----DIDTISPTLGFQIKT---LEY-EGYKLNIWDVGGQK   69 (173)
T ss_pred             CccEEEEECCCCCCHHHHHHHHccC-----CCCCcCCccccceEE---EEE-CCEEEEEEECCCCH
Confidence            4588999999999999999999873     222334444433221   222 24468999999964

Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.

>cd01865 Rab3 Rab3 subfamily

Probab=98.21  E-value=2.9e-06  Score=71.56  Aligned_cols=59  Identities=20%  Similarity=0.318  Sum_probs=35.1

Q ss_pred             eEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecC-CCcEEEEeCCCCC
Q psy15351        169 TTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISE-KPLIYILDTPGIS  232 (352)
Q Consensus       169 ~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~-~~~~~l~DtPGi~  232 (352)
                      ++|+++|.+|||||||+|++.+...    .....+..|++.... .+.... .-.+.++||||..
T Consensus         2 ~ki~i~G~~~~GKSsli~~l~~~~~----~~~~~~t~~~~~~~~-~~~~~~~~~~~~l~Dt~g~~   61 (165)
T cd01865           2 FKLLIIGNSSVGKTSFLFRYADDSF----TSAFVSTVGIDFKVK-TVFRNDKRVKLQIWDTAGQE   61 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCC----CCCCCCceeeEEEEE-EEEECCEEEEEEEEECCChH
Confidence            6899999999999999999996321    111112222222111 121111 1257899999964

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot

>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily

Probab=98.21  E-value=9.9e-06  Score=68.21  Aligned_cols=86  Identities=19%  Similarity=0.090  Sum_probs=58.8

Q ss_pred             HHHhhccCEEEEEEcCCCCCCCcCHHHHHHH---h----CCCCEEEEEEcccCCCccc--hHHHHHHHHhhcCCCCcEEE
Q psy15351          9 EKHLKNVDIVIEVHDSRMPFTGRNHLLQQSV---Q----NIRPMVLVLNKRDLINSKH--ESLIEEKVRKEQSHISEVIF   79 (352)
Q Consensus         9 ~~~i~~aD~vl~VvDar~p~~~~~~~l~~~l---~----~~k~~ilVlNK~Dl~~~~~--~~~~~~~~~~~~~~~~~v~~   79 (352)
                      ...+..+|++++|+|+.++-+.  ..+..++   .    .+.|+++|.||+|+.....  ..+..++.+..+.+   ++.
T Consensus        69 ~~~~~~~~~ii~v~d~~~~~s~--~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~---~~~  143 (166)
T cd01869          69 SSYYRGAHGIIIVYDVTDQESF--NNVKQWLQEIDRYASENVNKLLVGNKCDLTDKRVVDYSEAQEFADELGIP---FLE  143 (166)
T ss_pred             HHHhCcCCEEEEEEECcCHHHH--HhHHHHHHHHHHhCCCCCcEEEEEEChhcccccCCCHHHHHHHHHHcCCe---EEE
Confidence            4567889999999999875322  1222222   1    3579999999999875433  22333333334444   899


Q ss_pred             eecCCCCCCCHHHHHHHHHHHh
Q psy15351         80 TNCRNPNCKGVQKILPTLQHIS  101 (352)
Q Consensus        80 iSa~~~~~~gi~~L~~~i~~~~  101 (352)
                      +||+++  .|+++++..+.+.+
T Consensus       144 ~Sa~~~--~~v~~~~~~i~~~~  163 (166)
T cd01869         144 TSAKNA--TNVEQAFMTMAREI  163 (166)
T ss_pred             EECCCC--cCHHHHHHHHHHHH
Confidence            999999  99999998887644

Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t

>PTZ00133 ADP-ribosylation factor; Provisional

Probab=98.21  E-value=9.1e-06  Score=70.01  Aligned_cols=92  Identities=17%  Similarity=0.087  Sum_probs=58.1

Q ss_pred             HHHhhccCEEEEEEcCCCCCCC--cCHHHHHHHh----CCCCEEEEEEcccCCCccchHHHHHHHHhhcCCCC--cEEEe
Q psy15351          9 EKHLKNVDIVIEVHDSRMPFTG--RNHLLQQSVQ----NIRPMVLVLNKRDLINSKHESLIEEKVRKEQSHIS--EVIFT   80 (352)
Q Consensus         9 ~~~i~~aD~vl~VvDar~p~~~--~~~~l~~~l~----~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~--~v~~i   80 (352)
                      ...+..+|++|+|+|+.++.+.  ....+.+++.    ...|+++|+||.|+.......+..+.+........  .++.+
T Consensus        79 ~~~~~~ad~iI~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~l~~~~~~~~~~~~~~~  158 (182)
T PTZ00133         79 RHYYQNTNGLIFVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNAMSTTEVTEKLGLHSVRQRNWYIQGC  158 (182)
T ss_pred             HHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCCCCHHHHHHHhCCCcccCCcEEEEee
Confidence            3467999999999999765321  1122333332    35799999999998654333333333211111101  24468


Q ss_pred             ecCCCCCCCHHHHHHHHHHHhh
Q psy15351         81 NCRNPNCKGVQKILPTLQHISD  102 (352)
Q Consensus        81 Sa~~~~~~gi~~L~~~i~~~~~  102 (352)
                      ||+++  .|+++++++|.+.+.
T Consensus       159 Sa~tg--~gv~e~~~~l~~~i~  178 (182)
T PTZ00133        159 CATTA--QGLYEGLDWLSANIK  178 (182)
T ss_pred             eCCCC--CCHHHHHHHHHHHHH
Confidence            99999  999999999986554

>PRK15467 ethanolamine utilization protein EutP; Provisional

Probab=98.21  E-value=2.9e-06  Score=71.41  Aligned_cols=21  Identities=33%  Similarity=0.632  Sum_probs=19.9

Q ss_pred             EEEEeCCCCCChHHHHHHHhC
Q psy15351        170 TVMVVGVPNVGKSSIINALRS  190 (352)
Q Consensus       170 ~v~i~G~pnvGKStliN~l~~  190 (352)
                      +|+++|.||||||||+|+|.+
T Consensus         3 ~i~~iG~~~~GKstl~~~l~~   23 (158)
T PRK15467          3 RIAFVGAVGAGKTTLFNALQG   23 (158)
T ss_pred             EEEEECCCCCCHHHHHHHHcC
Confidence            699999999999999999986

>cd01861 Rab6 Rab6 subfamily

Probab=98.20  E-value=9.4e-06  Score=67.81  Aligned_cols=88  Identities=18%  Similarity=0.211  Sum_probs=58.6

Q ss_pred             HHHHhhccCEEEEEEcCCCCCCCcC--HHHHHHHh-C--CCCEEEEEEcccCCCccc-hHH-HHHHHHhhcCCCCcEEEe
Q psy15351          8 IEKHLKNVDIVIEVHDSRMPFTGRN--HLLQQSVQ-N--IRPMVLVLNKRDLINSKH-ESL-IEEKVRKEQSHISEVIFT   80 (352)
Q Consensus         8 ~~~~i~~aD~vl~VvDar~p~~~~~--~~l~~~l~-~--~k~~ilVlNK~Dl~~~~~-~~~-~~~~~~~~~~~~~~v~~i   80 (352)
                      ....+..+|++++|+|+.++-+..+  ..+..+.. .  +.|+++|+||+|+..... ..+ .....+..+.   +++.+
T Consensus        66 ~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~---~~~~~  142 (161)
T cd01861          66 IPSYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDKRQVSTEEGEKKAKELNA---MFIET  142 (161)
T ss_pred             HHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhccccCccCHHHHHHHHHHhCC---EEEEE
Confidence            4456799999999999987533211  22222222 2  489999999999954332 222 2333333344   48999


Q ss_pred             ecCCCCCCCHHHHHHHHHHH
Q psy15351         81 NCRNPNCKGVQKILPTLQHI  100 (352)
Q Consensus        81 Sa~~~~~~gi~~L~~~i~~~  100 (352)
                      ||+++  .|++++++++.+.
T Consensus       143 Sa~~~--~~v~~l~~~i~~~  160 (161)
T cd01861         143 SAKAG--HNVKELFRKIASA  160 (161)
T ss_pred             eCCCC--CCHHHHHHHHHHh
Confidence            99999  9999999988653

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate

>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2

Probab=98.20  E-value=3.2e-06  Score=71.43  Aligned_cols=60  Identities=18%  Similarity=0.302  Sum_probs=37.3

Q ss_pred             ceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCC-CcEEEEeCCCCC
Q psy15351        168 NTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEK-PLIYILDTPGIS  232 (352)
Q Consensus       168 ~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~-~~~~l~DtPGi~  232 (352)
                      .++|+++|.||||||||+|++.+...    .....+..|.+.... .+...+. -.+.++||||..
T Consensus         3 ~~ki~vvG~~~~GKSsl~~~~~~~~f----~~~~~~t~~~~~~~~-~~~~~~~~~~l~l~D~~g~~   63 (167)
T cd01867           3 LFKLLLIGDSGVGKSCLLLRFSEDSF----NPSFISTIGIDFKIR-TIELDGKKIKLQIWDTAGQE   63 (167)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhhCcC----CcccccCccceEEEE-EEEECCEEEEEEEEeCCchH
Confidence            47899999999999999999986321    112233333332221 2222221 257899999954

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi

>cd04119 RJL RJL (RabJ-Like) subfamily

Probab=98.20  E-value=9.7e-06  Score=67.99  Aligned_cols=87  Identities=20%  Similarity=0.111  Sum_probs=58.2

Q ss_pred             HHHhhccCEEEEEEcCCCCCCCcC--HHHHHHHh--------CCCCEEEEEEcccCCCcc--chHHHHHHHHhhcCCCCc
Q psy15351          9 EKHLKNVDIVIEVHDSRMPFTGRN--HLLQQSVQ--------NIRPMVLVLNKRDLINSK--HESLIEEKVRKEQSHISE   76 (352)
Q Consensus         9 ~~~i~~aD~vl~VvDar~p~~~~~--~~l~~~l~--------~~k~~ilVlNK~Dl~~~~--~~~~~~~~~~~~~~~~~~   76 (352)
                      ...+..+|++|+|+|.+++.+...  ..+..+.+        .+.|+++|.||+|+.++.  ...+...+..+.+..   
T Consensus        67 ~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~---  143 (168)
T cd04119          67 NEFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWAESKGFK---  143 (168)
T ss_pred             HHHhccCCEEEEEEECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHHHHHHcCCe---
Confidence            346789999999999987633211  11111211        247899999999997432  223333344444544   


Q ss_pred             EEEeecCCCCCCCHHHHHHHHHHH
Q psy15351         77 VIFTNCRNPNCKGVQKILPTLQHI  100 (352)
Q Consensus        77 v~~iSa~~~~~~gi~~L~~~i~~~  100 (352)
                      ++.+||+++  .|+++++++|.+.
T Consensus       144 ~~~~Sa~~~--~gi~~l~~~l~~~  165 (168)
T cd04119         144 YFETSACTG--EGVNEMFQTLFSS  165 (168)
T ss_pred             EEEEECCCC--CCHHHHHHHHHHH
Confidence            899999999  9999999988653

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.

>cd01866 Rab2 Rab2 subfamily

Probab=98.19  E-value=1.4e-05  Score=67.68  Aligned_cols=87  Identities=15%  Similarity=0.040  Sum_probs=60.4

Q ss_pred             HHHHhhccCEEEEEEcCCCCCCCcCHHHHHHH----h---CCCCEEEEEEcccCCCccc--hHHHHHHHHhhcCCCCcEE
Q psy15351          8 IEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSV----Q---NIRPMVLVLNKRDLINSKH--ESLIEEKVRKEQSHISEVI   78 (352)
Q Consensus         8 ~~~~i~~aD~vl~VvDar~p~~~~~~~l~~~l----~---~~k~~ilVlNK~Dl~~~~~--~~~~~~~~~~~~~~~~~v~   78 (352)
                      ....++.+|++++|+|++++.+.  ..+..++    +   .+.|+++|.||+|+.++..  ..+...+..+.+..   ++
T Consensus        70 ~~~~~~~~d~il~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~---~~  144 (168)
T cd01866          70 TRSYYRGAAGALLVYDITRRETF--NHLTSWLEDARQHSNSNMTIMLIGNKCDLESRREVSYEEGEAFAKEHGLI---FM  144 (168)
T ss_pred             HHHHhccCCEEEEEEECCCHHHH--HHHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCE---EE
Confidence            45577899999999999865332  2223332    1   3679999999999985432  23333444444554   89


Q ss_pred             EeecCCCCCCCHHHHHHHHHHHh
Q psy15351         79 FTNCRNPNCKGVQKILPTLQHIS  101 (352)
Q Consensus        79 ~iSa~~~~~~gi~~L~~~i~~~~  101 (352)
                      .+||+++  .|+++++..+.+.+
T Consensus       145 e~Sa~~~--~~i~~~~~~~~~~~  165 (168)
T cd01866         145 ETSAKTA--SNVEEAFINTAKEI  165 (168)
T ss_pred             EEeCCCC--CCHHHHHHHHHHHH
Confidence            9999999  99999998876554

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur

>cd04122 Rab14 Rab14 subfamily

Probab=98.19  E-value=1.2e-05  Score=67.80  Aligned_cols=86  Identities=12%  Similarity=0.023  Sum_probs=58.9

Q ss_pred             HHHHhhccCEEEEEEcCCCCCCCcCHHHHHHHh-------CCCCEEEEEEcccCCCccc--hHHHHHHHHhhcCCCCcEE
Q psy15351          8 IEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQ-------NIRPMVLVLNKRDLINSKH--ESLIEEKVRKEQSHISEVI   78 (352)
Q Consensus         8 ~~~~i~~aD~vl~VvDar~p~~~~~~~l~~~l~-------~~k~~ilVlNK~Dl~~~~~--~~~~~~~~~~~~~~~~~v~   78 (352)
                      ....+..+|.+++|+|+.++.+..  .+..++.       .+.|+++|.||+|+.....  .++..++.++.+..   ++
T Consensus        68 ~~~~~~~~~~~ilv~d~~~~~s~~--~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~---~~  142 (166)
T cd04122          68 TRSYYRGAAGALMVYDITRRSTYN--HLSSWLTDARNLTNPNTVIFLIGNKADLEAQRDVTYEEAKQFADENGLL---FL  142 (166)
T ss_pred             HHHHhcCCCEEEEEEECCCHHHHH--HHHHHHHHHHHhCCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCE---EE
Confidence            345678999999999998764321  2222221       3578999999999976532  23333334344444   88


Q ss_pred             EeecCCCCCCCHHHHHHHHHHH
Q psy15351         79 FTNCRNPNCKGVQKILPTLQHI  100 (352)
Q Consensus        79 ~iSa~~~~~~gi~~L~~~i~~~  100 (352)
                      .+||+++  .|+++++..+.+.
T Consensus       143 e~Sa~~~--~~i~e~f~~l~~~  162 (166)
T cd04122         143 ECSAKTG--ENVEDAFLETAKK  162 (166)
T ss_pred             EEECCCC--CCHHHHHHHHHHH
Confidence            9999999  9999998777543

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT

>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily

Probab=98.19  E-value=4.8e-06  Score=70.14  Aligned_cols=58  Identities=16%  Similarity=0.233  Sum_probs=35.5

Q ss_pred             eEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeee-eEEecC-CCcEEEEeCCCCC
Q psy15351        169 TTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMS-QVKISE-KPLIYILDTPGIS  232 (352)
Q Consensus       169 ~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~-~~~~~~-~~~~~l~DtPGi~  232 (352)
                      ++|+++|.+|||||||+|++.+..      ......|..+.+... .+...+ .-.+.++||||..
T Consensus         3 ~ki~i~G~~~vGKSsli~~~~~~~------~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~   62 (166)
T cd01869           3 FKLLLIGDSGVGKSCLLLRFADDT------YTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE   62 (166)
T ss_pred             EEEEEECCCCCCHHHHHHHHhcCC------CCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcH
Confidence            689999999999999999998631      111222333322211 122221 1257899999954

Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t

>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily

Probab=98.19  E-value=3.9e-06  Score=69.95  Aligned_cols=23  Identities=35%  Similarity=0.469  Sum_probs=21.1

Q ss_pred             eEEEEeCCCCCChHHHHHHHhCC
Q psy15351        169 TTVMVVGVPNVGKSSIINALRSS  191 (352)
Q Consensus       169 ~~v~i~G~pnvGKStliN~l~~~  191 (352)
                      ++|+++|.||||||||+|++.+.
T Consensus         2 ~ki~iiG~~~vGKTsl~~~~~~~   24 (162)
T cd04138           2 YKLVVVGAGGVGKSALTIQLIQN   24 (162)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Confidence            57999999999999999999963

H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.

>smart00173 RAS Ras subfamily of RAS small GTPases

Probab=98.18  E-value=1.1e-05  Score=67.71  Aligned_cols=88  Identities=17%  Similarity=0.097  Sum_probs=58.6

Q ss_pred             HHhhccCEEEEEEcCCCCCCCcC-HHHH-HHHh----CCCCEEEEEEcccCCCccc--hHHHHHHHHhhcCCCCcEEEee
Q psy15351         10 KHLKNVDIVIEVHDSRMPFTGRN-HLLQ-QSVQ----NIRPMVLVLNKRDLINSKH--ESLIEEKVRKEQSHISEVIFTN   81 (352)
Q Consensus        10 ~~i~~aD~vl~VvDar~p~~~~~-~~l~-~~l~----~~k~~ilVlNK~Dl~~~~~--~~~~~~~~~~~~~~~~~v~~iS   81 (352)
                      ..+..+|.+++|+|+.++-+... ..+. .+.+    ...|+++|.||+|+.+...  .....++.+..+.   +++.+|
T Consensus        67 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~~~~~~---~~~~~S  143 (164)
T smart00173       67 QYMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVVSTEEGKELARQWGC---PFLETS  143 (164)
T ss_pred             HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceEcHHHHHHHHHHcCC---EEEEee
Confidence            45788999999999987533211 1111 1111    3679999999999976432  2222333333344   489999


Q ss_pred             cCCCCCCCHHHHHHHHHHHhh
Q psy15351         82 CRNPNCKGVQKILPTLQHISD  102 (352)
Q Consensus        82 a~~~~~~gi~~L~~~i~~~~~  102 (352)
                      |+++  .|++++++++.+.+.
T Consensus       144 a~~~--~~i~~l~~~l~~~~~  162 (164)
T smart00173      144 AKER--VNVDEAFYDLVREIR  162 (164)
T ss_pred             cCCC--CCHHHHHHHHHHHHh
Confidence            9999  999999999876543

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades

>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2

Probab=98.18  E-value=1.4e-05  Score=67.49  Aligned_cols=86  Identities=15%  Similarity=0.008  Sum_probs=59.5

Q ss_pred             HHHhhccCEEEEEEcCCCCCCCcCHHHHHHH----h---CCCCEEEEEEcccCCCccc--hHHHHHHHHhhcCCCCcEEE
Q psy15351          9 EKHLKNVDIVIEVHDSRMPFTGRNHLLQQSV----Q---NIRPMVLVLNKRDLINSKH--ESLIEEKVRKEQSHISEVIF   79 (352)
Q Consensus         9 ~~~i~~aD~vl~VvDar~p~~~~~~~l~~~l----~---~~k~~ilVlNK~Dl~~~~~--~~~~~~~~~~~~~~~~~v~~   79 (352)
                      ...+.++|++++|.|+.++.+..  .+.+++    +   .+.|+++|.||+|+.+...  .+...+.....+.+   ++.
T Consensus        70 ~~~~~~ad~~i~v~d~~~~~s~~--~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~---~~~  144 (167)
T cd01867          70 TAYYRGAMGIILVYDITDEKSFE--NIRNWMRNIEEHASEDVERMLVGNKCDMEEKRVVSKEEGEALADEYGIK---FLE  144 (167)
T ss_pred             HHHhCCCCEEEEEEECcCHHHHH--hHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCE---EEE
Confidence            35678999999999998754321  222222    1   3579999999999985432  23333444344444   899


Q ss_pred             eecCCCCCCCHHHHHHHHHHHh
Q psy15351         80 TNCRNPNCKGVQKILPTLQHIS  101 (352)
Q Consensus        80 iSa~~~~~~gi~~L~~~i~~~~  101 (352)
                      +||+++  .|++++++++.+.+
T Consensus       145 ~Sa~~~--~~v~~~~~~i~~~~  164 (167)
T cd01867         145 TSAKAN--INVEEAFFTLAKDI  164 (167)
T ss_pred             EeCCCC--CCHHHHHHHHHHHH
Confidence            999999  99999999887644

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi

>CHL00071 tufA elongation factor Tu

Probab=98.18  E-value=2.9e-06  Score=82.56  Aligned_cols=68  Identities=18%  Similarity=0.229  Sum_probs=46.5

Q ss_pred             cCcceEEEEeCCCCCChHHHHHHHhCCCCC--CCC--------ceecCCCCCceeEeeeeEEecCCCcEEEEeCCCCC
Q psy15351        165 EVYNTTVMVVGVPNVGKSSIINALRSSHMK--KGK--------AVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGIS  232 (352)
Q Consensus       165 ~~~~~~v~i~G~pnvGKStliN~l~~~~~~--~~~--------~~~~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~  232 (352)
                      ..+.++|+++|.+|+|||||+|+|++..-.  ...        .......+|+|++.........+.++.|+||||..
T Consensus         9 ~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~   86 (409)
T CHL00071          9 KKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHA   86 (409)
T ss_pred             CCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChH
Confidence            356799999999999999999999863100  000        11122348999887543333455678999999953

>cd04159 Arl10_like Arl10-like subfamily

Probab=98.18  E-value=9.9e-06  Score=66.96  Aligned_cols=90  Identities=16%  Similarity=0.194  Sum_probs=59.0

Q ss_pred             HHHHhhccCEEEEEEcCCCCCCCcC--HHHHHHHh----CCCCEEEEEEcccCCCccchHHHHHHHHhh--cCCCCcEEE
Q psy15351          8 IEKHLKNVDIVIEVHDSRMPFTGRN--HLLQQSVQ----NIRPMVLVLNKRDLINSKHESLIEEKVRKE--QSHISEVIF   79 (352)
Q Consensus         8 ~~~~i~~aD~vl~VvDar~p~~~~~--~~l~~~l~----~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~--~~~~~~v~~   79 (352)
                      ....+..+|++++|+|++++.....  ..+.+++.    .++|+++|+||+|+.+......+.+.+...  .....+++.
T Consensus        61 ~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (159)
T cd04159          61 WERYCRGVNAIVYVVDAADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALSVDELIEQMNLKSITDREVSCYS  140 (159)
T ss_pred             HHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcCHHHHHHHhCcccccCCceEEEE
Confidence            4467889999999999986532111  12222222    367999999999998765444444333111  111124789


Q ss_pred             eecCCCCCCCHHHHHHHHHH
Q psy15351         80 TNCRNPNCKGVQKILPTLQH   99 (352)
Q Consensus        80 iSa~~~~~~gi~~L~~~i~~   99 (352)
                      +|++++  .|+++++++|.+
T Consensus       141 ~Sa~~~--~gi~~l~~~l~~  158 (159)
T cd04159         141 ISCKEK--TNIDIVLDWLIK  158 (159)
T ss_pred             EEeccC--CChHHHHHHHhh
Confidence            999999  999999988754

Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.

>cd04136 Rap_like Rap-like subfamily

Probab=98.18  E-value=9.6e-06  Score=67.83  Aligned_cols=86  Identities=21%  Similarity=0.127  Sum_probs=56.7

Q ss_pred             HHhhccCEEEEEEcCCCCCCCcC-HHHH-HHHh----CCCCEEEEEEcccCCCccch--HHHHHHHHhhcCCCCcEEEee
Q psy15351         10 KHLKNVDIVIEVHDSRMPFTGRN-HLLQ-QSVQ----NIRPMVLVLNKRDLINSKHE--SLIEEKVRKEQSHISEVIFTN   81 (352)
Q Consensus        10 ~~i~~aD~vl~VvDar~p~~~~~-~~l~-~~l~----~~k~~ilVlNK~Dl~~~~~~--~~~~~~~~~~~~~~~~v~~iS   81 (352)
                      ..+..+|.+++|+|..++.+..+ ..+. .+.+    .+.|+++|+||+|+.+....  ....++.+..+.   +++.+|
T Consensus        68 ~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~---~~~~~S  144 (163)
T cd04136          68 LYIKNGQGFVLVYSITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVSREEGQALARQWGC---PFYETS  144 (163)
T ss_pred             HHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceecHHHHHHHHHHcCC---eEEEec
Confidence            45688999999999987543221 1111 2221    36899999999999764321  222222223343   489999


Q ss_pred             cCCCCCCCHHHHHHHHHHH
Q psy15351         82 CRNPNCKGVQKILPTLQHI  100 (352)
Q Consensus        82 a~~~~~~gi~~L~~~i~~~  100 (352)
                      |+++  .|++++++++.+.
T Consensus       145 a~~~--~~v~~l~~~l~~~  161 (163)
T cd04136         145 AKSK--INVDEVFADLVRQ  161 (163)
T ss_pred             CCCC--CCHHHHHHHHHHh
Confidence            9999  9999999988653

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.

>cd04157 Arl6 Arl6 subfamily

Probab=98.18  E-value=3.1e-06  Score=70.78  Aligned_cols=57  Identities=25%  Similarity=0.395  Sum_probs=38.1

Q ss_pred             EEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCCcEEEEeCCCCCC
Q psy15351        170 TVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISL  233 (352)
Q Consensus       170 ~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~~  233 (352)
                      +|+++|.+|||||||++++.+...   ......++.|.+...   + ...+..+.++||||...
T Consensus         1 ~i~~vG~~~~GKTsl~~~l~~~~~---~~~~~~~t~g~~~~~---~-~~~~~~~~l~Dt~G~~~   57 (162)
T cd04157           1 NILVVGLDNSGKTTIINQLKPENA---QSQIIVPTVGFNVES---F-EKGNLSFTAFDMSGQGK   57 (162)
T ss_pred             CEEEECCCCCCHHHHHHHHcccCC---CcceecCccccceEE---E-EECCEEEEEEECCCCHh
Confidence            478999999999999999986210   123344555654332   1 12334688999999753

Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A

>cd04121 Rab40 Rab40 subfamily

Probab=98.18  E-value=1.3e-05  Score=69.49  Aligned_cols=88  Identities=11%  Similarity=0.033  Sum_probs=61.5

Q ss_pred             HHhhccCEEEEEEcCCCCCCCcCH--HHHHHHh--CCCCEEEEEEcccCCCccc--hHHHHHHHHhhcCCCCcEEEeecC
Q psy15351         10 KHLKNVDIVIEVHDSRMPFTGRNH--LLQQSVQ--NIRPMVLVLNKRDLINSKH--ESLIEEKVRKEQSHISEVIFTNCR   83 (352)
Q Consensus        10 ~~i~~aD~vl~VvDar~p~~~~~~--~l~~~l~--~~k~~ilVlNK~Dl~~~~~--~~~~~~~~~~~~~~~~~v~~iSa~   83 (352)
                      .....+|++|+|.|.+++.+..+-  .+.++.+  .+.|+++|.||+||.....  .++..++.++.+..   ++.+||+
T Consensus        74 ~~~~~ad~illVfD~t~~~Sf~~~~~w~~~i~~~~~~~piilVGNK~DL~~~~~v~~~~~~~~a~~~~~~---~~e~SAk  150 (189)
T cd04121          74 SYSRGAQGIILVYDITNRWSFDGIDRWIKEIDEHAPGVPKILVGNRLHLAFKRQVATEQAQAYAERNGMT---FFEVSPL  150 (189)
T ss_pred             HHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccchhccCCCHHHHHHHHHHcCCE---EEEecCC
Confidence            456899999999999887544321  1122222  4679999999999965322  23344444445554   8999999


Q ss_pred             CCCCCCHHHHHHHHHHHhh
Q psy15351         84 NPNCKGVQKILPTLQHISD  102 (352)
Q Consensus        84 ~~~~~gi~~L~~~i~~~~~  102 (352)
                      ++  .|++++++++.+.+.
T Consensus       151 ~g--~~V~~~F~~l~~~i~  167 (189)
T cd04121         151 CN--FNITESFTELARIVL  167 (189)
T ss_pred             CC--CCHHHHHHHHHHHHH
Confidence            99  999999999876543

This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d

>cd04106 Rab23_lke Rab23-like subfamily

Probab=98.18  E-value=1.2e-05  Score=67.15  Aligned_cols=84  Identities=18%  Similarity=0.169  Sum_probs=59.2

Q ss_pred             HHHhhccCEEEEEEcCCCCCCCcCHHHHHHH---h---CCCCEEEEEEcccCCCccc--hHHHHHHHHhhcCCCCcEEEe
Q psy15351          9 EKHLKNVDIVIEVHDSRMPFTGRNHLLQQSV---Q---NIRPMVLVLNKRDLINSKH--ESLIEEKVRKEQSHISEVIFT   80 (352)
Q Consensus         9 ~~~i~~aD~vl~VvDar~p~~~~~~~l~~~l---~---~~k~~ilVlNK~Dl~~~~~--~~~~~~~~~~~~~~~~~v~~i   80 (352)
                      ...+..+|++++|.|+.++.+.  ..+..++   .   .+.|+++|+||+|+.....  .++..+..+..+.+   ++.+
T Consensus        69 ~~~~~~~~~~v~v~d~~~~~s~--~~l~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~---~~~~  143 (162)
T cd04106          69 KAYYRGAQACILVFSTTDRESF--EAIESWKEKVEAECGDIPMVLVQTKIDLLDQAVITNEEAEALAKRLQLP---LFRT  143 (162)
T ss_pred             HHHhcCCCEEEEEEECCCHHHH--HHHHHHHHHHHHhCCCCCEEEEEEChhcccccCCCHHHHHHHHHHcCCe---EEEE
Confidence            4567899999999999876432  1222222   1   4789999999999976543  23333344444554   8999


Q ss_pred             ecCCCCCCCHHHHHHHHHH
Q psy15351         81 NCRNPNCKGVQKILPTLQH   99 (352)
Q Consensus        81 Sa~~~~~~gi~~L~~~i~~   99 (352)
                      ||+++  .|+++++++|.+
T Consensus       144 Sa~~~--~~v~~l~~~l~~  160 (162)
T cd04106         144 SVKDD--FNVTELFEYLAE  160 (162)
T ss_pred             ECCCC--CCHHHHHHHHHH
Confidence            99999  999999988754

Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G

>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily

Probab=98.18  E-value=2.9e-06  Score=77.76  Aligned_cols=21  Identities=29%  Similarity=0.485  Sum_probs=19.2

Q ss_pred             EEEEeCCCCCChHHHHHHHhC
Q psy15351        170 TVMVVGVPNVGKSSIINALRS  190 (352)
Q Consensus       170 ~v~i~G~pnvGKStliN~l~~  190 (352)
                      +|+++|.+|+|||||+|+|..
T Consensus         1 ni~ivG~~gsGKStL~~~Ll~   21 (268)
T cd04170           1 NIALVGHSGSGKTTLAEALLY   21 (268)
T ss_pred             CEEEECCCCCCHHHHHHHHHH
Confidence            489999999999999999975

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group

>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases

Probab=98.18  E-value=4.5e-06  Score=71.97  Aligned_cols=59  Identities=15%  Similarity=0.268  Sum_probs=39.2

Q ss_pred             CcceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCCcEEEEeCCCCCC
Q psy15351        166 VYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISL  233 (352)
Q Consensus       166 ~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~~  233 (352)
                      .+.++|+++|.+|||||||+|++.+.     ....+.++.+.+...   + ...+..+.++||||...
T Consensus        15 ~~~~~i~ivG~~~~GKTsli~~l~~~-----~~~~~~~t~~~~~~~---~-~~~~~~~~~~D~~G~~~   73 (184)
T smart00178       15 NKHAKILFLGLDNAGKTTLLHMLKND-----RLAQHQPTQHPTSEE---L-AIGNIKFTTFDLGGHQQ   73 (184)
T ss_pred             cccCEEEEECCCCCCHHHHHHHHhcC-----CCcccCCccccceEE---E-EECCEEEEEEECCCCHH
Confidence            34588999999999999999999973     222233333333221   1 12344688999999753

Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.

>cd04120 Rab12 Rab12 subfamily

Probab=98.17  E-value=1.3e-05  Score=70.29  Aligned_cols=88  Identities=15%  Similarity=0.027  Sum_probs=59.0

Q ss_pred             HHHhhccCEEEEEEcCCCCCCCcCH-HHHHHHh----CCCCEEEEEEcccCCCccch--HHHHHHHHhh-cCCCCcEEEe
Q psy15351          9 EKHLKNVDIVIEVHDSRMPFTGRNH-LLQQSVQ----NIRPMVLVLNKRDLINSKHE--SLIEEKVRKE-QSHISEVIFT   80 (352)
Q Consensus         9 ~~~i~~aD~vl~VvDar~p~~~~~~-~l~~~l~----~~k~~ilVlNK~Dl~~~~~~--~~~~~~~~~~-~~~~~~v~~i   80 (352)
                      ...+..+|++|+|.|..++.+..+- .+...++    .+.|+++|.||+||.....+  .+..++.++. +..   ++.+
T Consensus        67 ~~y~~~ad~iIlVfDvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~a~~~~~~~---~~et  143 (202)
T cd04120          67 SAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREISRQQGEKFAQQITGMR---FCEA  143 (202)
T ss_pred             HHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCE---EEEe
Confidence            3567899999999999876433221 1222222    36799999999999754332  2222222222 343   8899


Q ss_pred             ecCCCCCCCHHHHHHHHHHHh
Q psy15351         81 NCRNPNCKGVQKILPTLQHIS  101 (352)
Q Consensus        81 Sa~~~~~~gi~~L~~~i~~~~  101 (352)
                      ||+++  .|+++++.++.+.+
T Consensus       144 SAktg--~gV~e~F~~l~~~~  162 (202)
T cd04120         144 SAKDN--FNVDEIFLKLVDDI  162 (202)
T ss_pred             cCCCC--CCHHHHHHHHHHHH
Confidence            99999  99999998887654

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic

>cd01864 Rab19 Rab19 subfamily

Probab=98.17  E-value=5.3e-06  Score=69.88  Aligned_cols=59  Identities=25%  Similarity=0.437  Sum_probs=35.3

Q ss_pred             ceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCC-CcEEEEeCCCC
Q psy15351        168 NTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEK-PLIYILDTPGI  231 (352)
Q Consensus       168 ~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~-~~~~l~DtPGi  231 (352)
                      .++|+++|.+|+|||||++++.....    ........|+.... ..+...+. ..+.++||||-
T Consensus         3 ~~kv~vvG~~~~GKTsli~~l~~~~~----~~~~~~t~~~~~~~-~~~~~~~~~~~l~i~D~~G~   62 (165)
T cd01864           3 LFKIILIGDSNVGKTCVVQRFKSGTF----SERQGNTIGVDFTM-KTLEIEGKRVKLQIWDTAGQ   62 (165)
T ss_pred             eeEEEEECCCCCCHHHHHHHHhhCCC----cccCCCccceEEEE-EEEEECCEEEEEEEEECCCh
Confidence            47899999999999999999985211    11112222221111 12222221 25789999994

Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily

Probab=98.16  E-value=1.1e-05  Score=70.48  Aligned_cols=91  Identities=16%  Similarity=0.080  Sum_probs=61.5

Q ss_pred             HHHhhccCEEEEEEcCCCCCCCcC-----HHHHHHHh----CCCCEEEEEEcccCCCcc--chHHHHHHHHhhcCCCCcE
Q psy15351          9 EKHLKNVDIVIEVHDSRMPFTGRN-----HLLQQSVQ----NIRPMVLVLNKRDLINSK--HESLIEEKVRKEQSHISEV   77 (352)
Q Consensus         9 ~~~i~~aD~vl~VvDar~p~~~~~-----~~l~~~l~----~~k~~ilVlNK~Dl~~~~--~~~~~~~~~~~~~~~~~~v   77 (352)
                      ...+.++|++++|+|..++.+...     ..+...+.    ...|+++|.||+|+.+..  ...+..++.+..+..  .+
T Consensus        68 ~~~~~~a~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~--~~  145 (201)
T cd04107          68 RVYYRGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCKENGFI--GW  145 (201)
T ss_pred             HHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCc--eE
Confidence            456789999999999987643222     11212111    356999999999997422  233444444444522  48


Q ss_pred             EEeecCCCCCCCHHHHHHHHHHHhhh
Q psy15351         78 IFTNCRNPNCKGVQKILPTLQHISDN  103 (352)
Q Consensus        78 ~~iSa~~~~~~gi~~L~~~i~~~~~~  103 (352)
                      +.+||+++  .|++++++++.+.+..
T Consensus       146 ~e~Sak~~--~~v~e~f~~l~~~l~~  169 (201)
T cd04107         146 FETSAKEG--INIEEAMRFLVKNILA  169 (201)
T ss_pred             EEEeCCCC--CCHHHHHHHHHHHHHH
Confidence            99999999  9999999998866543

Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily

Probab=98.16  E-value=3.1e-06  Score=73.61  Aligned_cols=64  Identities=19%  Similarity=0.333  Sum_probs=39.5

Q ss_pred             EEEEeCCCCCChHHHHHHHhCC--CCCCCCc--ee------cCCCCCceeEeeeeEEecCCCcEEEEeCCCCCC
Q psy15351        170 TVMVVGVPNVGKSSIINALRSS--HMKKGKA--VP------VGPKAGVTRSVMSQVKISEKPLIYILDTPGISL  233 (352)
Q Consensus       170 ~v~i~G~pnvGKStliN~l~~~--~~~~~~~--~~------~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~~  233 (352)
                      +|+++|.+|||||||+|+|++.  .+.....  ..      .....|+|...........+..+.++||||...
T Consensus         4 ~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~   77 (194)
T cd01891           4 NIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHAD   77 (194)
T ss_pred             EEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHH
Confidence            6999999999999999999852  1111000  00      012356665543322223445789999999754

BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co

>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily

Probab=98.16  E-value=1.4e-05  Score=67.98  Aligned_cols=90  Identities=13%  Similarity=0.098  Sum_probs=57.9

Q ss_pred             HHHhhccCEEEEEEcCCCCCCCc--CHHHHHHHh----CCCCEEEEEEcccCCCccch---H-HHHHHHHhhcCCCCcEE
Q psy15351          9 EKHLKNVDIVIEVHDSRMPFTGR--NHLLQQSVQ----NIRPMVLVLNKRDLINSKHE---S-LIEEKVRKEQSHISEVI   78 (352)
Q Consensus         9 ~~~i~~aD~vl~VvDar~p~~~~--~~~l~~~l~----~~k~~ilVlNK~Dl~~~~~~---~-~~~~~~~~~~~~~~~v~   78 (352)
                      ...+..+|++++|.|+.++.+..  ...+..+.+    ...|+++|.||+|+.+....   . ...++.++.+.   +++
T Consensus        67 ~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~~~~---~~~  143 (170)
T cd04108          67 STYYRGAQAIIIVFDLTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAAEMQA---EYW  143 (170)
T ss_pred             HHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHHHHHHHHcCC---eEE
Confidence            34578999999999997642221  112222222    12458999999999754321   1 11122223343   388


Q ss_pred             EeecCCCCCCCHHHHHHHHHHHhhh
Q psy15351         79 FTNCRNPNCKGVQKILPTLQHISDN  103 (352)
Q Consensus        79 ~iSa~~~~~~gi~~L~~~i~~~~~~  103 (352)
                      .+||+++  .|++++++.+.+++.+
T Consensus       144 e~Sa~~g--~~v~~lf~~l~~~~~~  166 (170)
T cd04108         144 SVSALSG--ENVREFFFRVAALTFE  166 (170)
T ss_pred             EEECCCC--CCHHHHHHHHHHHHHH
Confidence            9999999  9999999998876643

Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re

>cd04139 RalA_RalB RalA/RalB subfamily

Probab=98.16  E-value=4e-06  Score=70.15  Aligned_cols=58  Identities=24%  Similarity=0.259  Sum_probs=35.6

Q ss_pred             eEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCC--CcEEEEeCCCCCC
Q psy15351        169 TTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEK--PLIYILDTPGISL  233 (352)
Q Consensus       169 ~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~--~~~~l~DtPGi~~  233 (352)
                      ++|+++|.||||||||+|++.....       .....+++.+........++  -.+.++||||...
T Consensus         1 ~ki~~~G~~~~GKTsl~~~l~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~   60 (164)
T cd04139           1 YKVIVVGAGGVGKSALTLQFMYDEF-------VEDYEPTKADSYRKKVVLDGEDVQLNILDTAGQED   60 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCC-------ccccCCcchhhEEEEEEECCEEEEEEEEECCChhh
Confidence            4799999999999999999986321       12223333222111111221  2478999999643

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo

>cd04175 Rap1 Rap1 subgroup

Probab=98.15  E-value=4.6e-06  Score=70.10  Aligned_cols=58  Identities=24%  Similarity=0.292  Sum_probs=35.9

Q ss_pred             eEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeee-eEEecC-CCcEEEEeCCCCCC
Q psy15351        169 TTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMS-QVKISE-KPLIYILDTPGISL  233 (352)
Q Consensus       169 ~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~-~~~~~~-~~~~~l~DtPGi~~  233 (352)
                      ++|+++|.+|||||||++++...     .  .....+.|+.+... .+...+ ...+.++||||...
T Consensus         2 ~ki~~~G~~~~GKTsli~~~~~~-----~--~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~   61 (164)
T cd04175           2 YKLVVLGSGGVGKSALTVQFVQG-----I--FVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQ   61 (164)
T ss_pred             cEEEEECCCCCCHHHHHHHHHhC-----C--CCcccCCcchheEEEEEEECCEEEEEEEEECCCccc
Confidence            67999999999999999999852     1  12223334332221 222221 11456899999753

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n

>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another

Probab=98.15  E-value=3.4e-06  Score=71.37  Aligned_cols=22  Identities=50%  Similarity=0.578  Sum_probs=20.1

Q ss_pred             EEEeCCCCCChHHHHHHHhCCC
Q psy15351        171 VMVVGVPNVGKSSIINALRSSH  192 (352)
Q Consensus       171 v~i~G~pnvGKStliN~l~~~~  192 (352)
                      |+++|..++|||||||+|.|..
T Consensus         1 V~v~G~~ssGKSTliNaLlG~~   22 (168)
T PF00350_consen    1 VAVVGQFSSGKSTLINALLGRP   22 (168)
T ss_dssp             EEEEEBTTSSHHHHHHHHHTSS
T ss_pred             CEEEcCCCCCHHHHHHHHHhcc
Confidence            6899999999999999999853

Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....

>cd04156 ARLTS1 ARLTS1 subfamily

Probab=98.15  E-value=4.8e-06  Score=69.59  Aligned_cols=55  Identities=20%  Similarity=0.439  Sum_probs=37.1

Q ss_pred             EEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCCcEEEEeCCCCC
Q psy15351        170 TVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGIS  232 (352)
Q Consensus       170 ~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~  232 (352)
                      +|+++|.+|||||||+|++.+.     ......+..|.+...   +.......+.++||||..
T Consensus         1 ~i~i~G~~~~GKTsl~~~~~~~-----~~~~~~~t~~~~~~~---~~~~~~~~l~i~D~~G~~   55 (160)
T cd04156           1 QVLLLGLDSAGKSTLLYKLKHA-----ELVTTIPTVGFNVEM---LQLEKHLSLTVWDVGGQE   55 (160)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcC-----CcccccCccCcceEE---EEeCCceEEEEEECCCCH
Confidence            4889999999999999999973     222334444443322   222233468999999974

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h

>cd04109 Rab28 Rab28 subfamily

Probab=98.15  E-value=1.3e-05  Score=70.97  Aligned_cols=88  Identities=17%  Similarity=0.077  Sum_probs=57.7

Q ss_pred             HHhhccCEEEEEEcCCCCCCCcCH-HHHHHHh-------CCCCEEEEEEcccCCCccc--hHHHHHHHHhhcCCCCcEEE
Q psy15351         10 KHLKNVDIVIEVHDSRMPFTGRNH-LLQQSVQ-------NIRPMVLVLNKRDLINSKH--ESLIEEKVRKEQSHISEVIF   79 (352)
Q Consensus        10 ~~i~~aD~vl~VvDar~p~~~~~~-~l~~~l~-------~~k~~ilVlNK~Dl~~~~~--~~~~~~~~~~~~~~~~~v~~   79 (352)
                      ..+..+|++|+|+|+.++-+..+. .+...+.       .+.|+++|.||+|+.....  .....++.+..+..   ++.
T Consensus        69 ~~~~~ad~iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~---~~~  145 (215)
T cd04109          69 KYIYGAHAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARFAQANGME---SCL  145 (215)
T ss_pred             HHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHHHHHHHHHcCCE---EEE
Confidence            467899999999999876432211 1112121       1246899999999974332  12222333333443   889


Q ss_pred             eecCCCCCCCHHHHHHHHHHHhh
Q psy15351         80 TNCRNPNCKGVQKILPTLQHISD  102 (352)
Q Consensus        80 iSa~~~~~~gi~~L~~~i~~~~~  102 (352)
                      +||+++  .|++++++++.+.+.
T Consensus       146 iSAktg--~gv~~lf~~l~~~l~  166 (215)
T cd04109         146 VSAKTG--DRVNLLFQQLAAELL  166 (215)
T ss_pred             EECCCC--CCHHHHHHHHHHHHH
Confidence            999999  999999999886654

First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs

>cd04123 Rab21 Rab21 subfamily

Probab=98.15  E-value=1.1e-05  Score=67.13  Aligned_cols=86  Identities=22%  Similarity=0.177  Sum_probs=57.9

Q ss_pred             HHhhccCEEEEEEcCCCCCCCcC-HHH-HHHHh---CCCCEEEEEEcccCCCccc--hHHHHHHHHhhcCCCCcEEEeec
Q psy15351         10 KHLKNVDIVIEVHDSRMPFTGRN-HLL-QQSVQ---NIRPMVLVLNKRDLINSKH--ESLIEEKVRKEQSHISEVIFTNC   82 (352)
Q Consensus        10 ~~i~~aD~vl~VvDar~p~~~~~-~~l-~~~l~---~~k~~ilVlNK~Dl~~~~~--~~~~~~~~~~~~~~~~~v~~iSa   82 (352)
                      ..+..+|++++|+|+.++-+... ..+ ..+..   .+.|+++|+||+|+.....  .+...++.+..+..   ++.+|+
T Consensus        68 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~---~~~~s~  144 (162)
T cd04123          68 IYYRDADGAILVYDITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLERQRVVSKSEAEEYAKSVGAK---HFETSA  144 (162)
T ss_pred             HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCE---EEEEeC
Confidence            34678999999999876532211 111 11111   3579999999999985432  23344444444554   899999


Q ss_pred             CCCCCCCHHHHHHHHHHH
Q psy15351         83 RNPNCKGVQKILPTLQHI  100 (352)
Q Consensus        83 ~~~~~~gi~~L~~~i~~~  100 (352)
                      +++  .|++++++++.+.
T Consensus       145 ~~~--~gi~~~~~~l~~~  160 (162)
T cd04123         145 KTG--KGIEELFLSLAKR  160 (162)
T ss_pred             CCC--CCHHHHHHHHHHH
Confidence            999  9999999998654

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site

>cd04168 TetM_like Tet(M)-like subfamily

Probab=98.14  E-value=7.5e-06  Score=73.65  Aligned_cols=64  Identities=17%  Similarity=0.153  Sum_probs=38.1

Q ss_pred             EEEEeCCCCCChHHHHHHHhCCCCCCCCce------ec------CCCCCceeEeeeeEEecCCCcEEEEeCCCCCC
Q psy15351        170 TVMVVGVPNVGKSSIINALRSSHMKKGKAV------PV------GPKAGVTRSVMSQVKISEKPLIYILDTPGISL  233 (352)
Q Consensus       170 ~v~i~G~pnvGKStliN~l~~~~~~~~~~~------~~------~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~~  233 (352)
                      +|+++|.+|+|||||+++|+...-...+..      .+      ....|.|...........+.++.++||||...
T Consensus         1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~   76 (237)
T cd04168           1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMD   76 (237)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccc
Confidence            489999999999999999985310000000      00      11233344332222333455799999999964

Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.

>CHL00071 tufA elongation factor Tu

Probab=98.14  E-value=1.5e-05  Score=77.61  Aligned_cols=83  Identities=14%  Similarity=0.031  Sum_probs=58.7

Q ss_pred             hHHHHHHHHhhccCEEEEEEcCCCCCCCcCHHHHHHHh-CCCC-EEEEEEcccCCCccch-----HHHHHHHHhhcCC--
Q psy15351          3 RGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQ-NIRP-MVLVLNKRDLINSKHE-----SLIEEKVRKEQSH--   73 (352)
Q Consensus         3 ~~~~~~~~~i~~aD~vl~VvDar~p~~~~~~~l~~~l~-~~k~-~ilVlNK~Dl~~~~~~-----~~~~~~~~~~~~~--   73 (352)
                      +.++.+...+..+|++++|+|++.++.....++..++. .+.| +++++||+|+++.+..     ++..++++..++.  
T Consensus        87 ~~~~~~~~~~~~~D~~ilVvda~~g~~~qt~~~~~~~~~~g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~l~~~~~~~~  166 (409)
T CHL00071         87 DYVKNMITGAAQMDGAILVVSAADGPMPQTKEHILLAKQVGVPNIVVFLNKEDQVDDEELLELVELEVRELLSKYDFPGD  166 (409)
T ss_pred             HHHHHHHHHHHhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEccCCCCHHHHHHHHHHHHHHHHHHhCCCCC
Confidence            45677888999999999999999877665555555554 5778 6688999999875432     2333444443432  


Q ss_pred             CCcEEEeecCCC
Q psy15351         74 ISEVIFTNCRNP   85 (352)
Q Consensus        74 ~~~v~~iSa~~~   85 (352)
                      ..+++++||.++
T Consensus       167 ~~~ii~~Sa~~g  178 (409)
T CHL00071        167 DIPIVSGSALLA  178 (409)
T ss_pred             cceEEEcchhhc
Confidence            135899999887

>cd04106 Rab23_lke Rab23-like subfamily

Probab=98.14  E-value=5.4e-06  Score=69.38  Aligned_cols=22  Identities=50%  Similarity=0.653  Sum_probs=20.5

Q ss_pred             eEEEEeCCCCCChHHHHHHHhC
Q psy15351        169 TTVMVVGVPNVGKSSIINALRS  190 (352)
Q Consensus       169 ~~v~i~G~pnvGKStliN~l~~  190 (352)
                      ++|+++|.+|||||||+|++.+
T Consensus         1 ~kv~~vG~~~~GKTsl~~~~~~   22 (162)
T cd04106           1 IKVIVVGNGNVGKSSMIQRFVK   22 (162)
T ss_pred             CEEEEECCCCCCHHHHHHHHhc
Confidence            4799999999999999999986

Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G

>cd01868 Rab11_like Rab11-like

Probab=98.13  E-value=1.7e-05  Score=66.69  Aligned_cols=85  Identities=16%  Similarity=0.052  Sum_probs=58.1

Q ss_pred             HHHhhccCEEEEEEcCCCCCCCcCHHHHHHHh-------CCCCEEEEEEcccCCCccc--hHHHHHHHHhhcCCCCcEEE
Q psy15351          9 EKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQ-------NIRPMVLVLNKRDLINSKH--ESLIEEKVRKEQSHISEVIF   79 (352)
Q Consensus         9 ~~~i~~aD~vl~VvDar~p~~~~~~~l~~~l~-------~~k~~ilVlNK~Dl~~~~~--~~~~~~~~~~~~~~~~~v~~   79 (352)
                      ...+..+|.+++|+|+.++.+.  ..+.+++.       .+.|+++|.||+|+.....  .++..++....+..   ++.
T Consensus        70 ~~~~~~~~~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~---~~~  144 (165)
T cd01868          70 SAYYRGAVGALLVYDITKKQTF--ENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTEEAKAFAEKNGLS---FIE  144 (165)
T ss_pred             HHHHCCCCEEEEEEECcCHHHH--HHHHHHHHHHHHhCCCCCeEEEEEECccccccccCCHHHHHHHHHHcCCE---EEE
Confidence            3466889999999999865432  22222221       2579999999999975432  23333333333443   899


Q ss_pred             eecCCCCCCCHHHHHHHHHHH
Q psy15351         80 TNCRNPNCKGVQKILPTLQHI  100 (352)
Q Consensus        80 iSa~~~~~~gi~~L~~~i~~~  100 (352)
                      +||+++  .|++++++.+.+.
T Consensus       145 ~Sa~~~--~~v~~l~~~l~~~  163 (165)
T cd01868         145 TSALDG--TNVEEAFKQLLTE  163 (165)
T ss_pred             EECCCC--CCHHHHHHHHHHH
Confidence            999999  9999999987653

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP

>cd01860 Rab5_related Rab5-related subfamily

Probab=98.13  E-value=2e-05  Score=65.99  Aligned_cols=87  Identities=14%  Similarity=0.068  Sum_probs=59.3

Q ss_pred             HHhhccCEEEEEEcCCCCCCCcC-HHH-HHHHh---CCCCEEEEEEcccCCCcc--chHHHHHHHHhhcCCCCcEEEeec
Q psy15351         10 KHLKNVDIVIEVHDSRMPFTGRN-HLL-QQSVQ---NIRPMVLVLNKRDLINSK--HESLIEEKVRKEQSHISEVIFTNC   82 (352)
Q Consensus        10 ~~i~~aD~vl~VvDar~p~~~~~-~~l-~~~l~---~~k~~ilVlNK~Dl~~~~--~~~~~~~~~~~~~~~~~~v~~iSa   82 (352)
                      ..+..+|++++|+|+.++.+... ..+ ..+..   ...|+++|.||+|+.+..  ......+.....+.   +++.+||
T Consensus        69 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~---~~~~~Sa  145 (163)
T cd01860          69 MYYRGAAAAIVVYDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLESKRQVSTEEAQEYADENGL---LFFETSA  145 (163)
T ss_pred             HHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccCcCCHHHHHHHHHHcCC---EEEEEEC
Confidence            46778999999999986532211 112 22222   346799999999987432  23344444444454   4999999


Q ss_pred             CCCCCCCHHHHHHHHHHHh
Q psy15351         83 RNPNCKGVQKILPTLQHIS  101 (352)
Q Consensus        83 ~~~~~~gi~~L~~~i~~~~  101 (352)
                      +++  .|+.+++++|.+.+
T Consensus       146 ~~~--~~v~~l~~~l~~~l  162 (163)
T cd01860         146 KTG--ENVNELFTEIAKKL  162 (163)
T ss_pred             CCC--CCHHHHHHHHHHHh
Confidence            999  99999999987654

This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo

>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=98.13  E-value=7e-06  Score=70.28  Aligned_cols=89  Identities=25%  Similarity=0.249  Sum_probs=60.7

Q ss_pred             HHhhccCEEEEEEcCCCCCC--CcCHHHHHHHh----CCCCEEEEEEcccCCCccchHHHHHHHHhhcCC---CCcEEEe
Q psy15351         10 KHLKNVDIVIEVHDSRMPFT--GRNHLLQQSVQ----NIRPMVLVLNKRDLINSKHESLIEEKVRKEQSH---ISEVIFT   80 (352)
Q Consensus        10 ~~i~~aD~vl~VvDar~p~~--~~~~~l~~~l~----~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~---~~~v~~i   80 (352)
                      .....+|.||+|+|+.++-.  .....+.+++.    .+.|+++++||.|+.+.....+..+.+.-..+.   .-.++.+
T Consensus        77 ~y~~~~~~iIfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~~~~~~i~~~l~l~~l~~~~~~~v~~~  156 (175)
T PF00025_consen   77 SYFQNADGIIFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDAMSEEEIKEYLGLEKLKNKRPWSVFSC  156 (175)
T ss_dssp             GGHTTESEEEEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTSSTHHHHHHHTTGGGTTSSSCEEEEEE
T ss_pred             eeccccceeEEEEecccceeecccccchhhhcchhhcccceEEEEeccccccCcchhhHHHhhhhhhhcccCCceEEEee
Confidence            35678999999999986531  11123444443    468999999999987655445555544222221   1147789


Q ss_pred             ecCCCCCCCHHHHHHHHHHH
Q psy15351         81 NCRNPNCKGVQKILPTLQHI  100 (352)
Q Consensus        81 Sa~~~~~~gi~~L~~~i~~~  100 (352)
                      ||.++  +|+.+.++||.+.
T Consensus       157 sa~~g--~Gv~e~l~WL~~~  174 (175)
T PF00025_consen  157 SAKTG--EGVDEGLEWLIEQ  174 (175)
T ss_dssp             BTTTT--BTHHHHHHHHHHH
T ss_pred             eccCC--cCHHHHHHHHHhc
Confidence            99999  9999999998753

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....

>cd04113 Rab4 Rab4 subfamily

Probab=98.12  E-value=1.8e-05  Score=66.28  Aligned_cols=87  Identities=11%  Similarity=0.005  Sum_probs=60.3

Q ss_pred             HHHHhhccCEEEEEEcCCCCCCCcC-HHHHHHHh----CCCCEEEEEEcccCCCccc--hHHHHHHHHhhcCCCCcEEEe
Q psy15351          8 IEKHLKNVDIVIEVHDSRMPFTGRN-HLLQQSVQ----NIRPMVLVLNKRDLINSKH--ESLIEEKVRKEQSHISEVIFT   80 (352)
Q Consensus         8 ~~~~i~~aD~vl~VvDar~p~~~~~-~~l~~~l~----~~k~~ilVlNK~Dl~~~~~--~~~~~~~~~~~~~~~~~v~~i   80 (352)
                      ....+..+|.+++|+|+.++.+..+ ..+...++    .+.|+++|.||+|+.....  .++...+.+..+..   ++.+
T Consensus        66 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~---~~~~  142 (161)
T cd04113          66 TRSYYRGAAGALLVYDITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLADQREVTFLEASRFAQENGLL---FLET  142 (161)
T ss_pred             HHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcchhccCCHHHHHHHHHHcCCE---EEEE
Confidence            3456789999999999987643322 11211111    4789999999999976432  23444444455544   9999


Q ss_pred             ecCCCCCCCHHHHHHHHHH
Q psy15351         81 NCRNPNCKGVQKILPTLQH   99 (352)
Q Consensus        81 Sa~~~~~~gi~~L~~~i~~   99 (352)
                      ||+++  .|++++++++.+
T Consensus       143 Sa~~~--~~i~~~~~~~~~  159 (161)
T cd04113         143 SALTG--ENVEEAFLKCAR  159 (161)
T ss_pred             ECCCC--CCHHHHHHHHHH
Confidence            99999  999999988764

Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p

>cd00154 Rab Rab family

Probab=98.12  E-value=1.8e-05  Score=65.34  Aligned_cols=86  Identities=16%  Similarity=0.146  Sum_probs=57.8

Q ss_pred             HHHHhhccCEEEEEEcCCCCCCCcC-HHHHHHH-h---CCCCEEEEEEcccCC-Ccc-chHHHHHHHHhhcCCCCcEEEe
Q psy15351          8 IEKHLKNVDIVIEVHDSRMPFTGRN-HLLQQSV-Q---NIRPMVLVLNKRDLI-NSK-HESLIEEKVRKEQSHISEVIFT   80 (352)
Q Consensus         8 ~~~~i~~aD~vl~VvDar~p~~~~~-~~l~~~l-~---~~k~~ilVlNK~Dl~-~~~-~~~~~~~~~~~~~~~~~~v~~i   80 (352)
                      ....++++|++++|+|+.++.+... ..+...+ .   ...|+++|+||+|+. +.. ..++..++..+.+..   ++.+
T Consensus        66 ~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~---~~~~  142 (159)
T cd00154          66 TPSYYRGAHGAILVYDITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLEDQRQVSTEEAQQFAKENGLL---FFET  142 (159)
T ss_pred             HHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccccccccccHHHHHHHHHHcCCe---EEEE
Confidence            4567789999999999987432111 1122222 2   258999999999997 322 234444444443444   9999


Q ss_pred             ecCCCCCCCHHHHHHHHH
Q psy15351         81 NCRNPNCKGVQKILPTLQ   98 (352)
Q Consensus        81 Sa~~~~~~gi~~L~~~i~   98 (352)
                      ||+++  .|+++++++|.
T Consensus       143 sa~~~--~~i~~~~~~i~  158 (159)
T cd00154         143 SAKTG--ENVEELFQSLA  158 (159)
T ss_pred             ecCCC--CCHHHHHHHHh
Confidence            99999  99999998874

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di

>cd04175 Rap1 Rap1 subgroup

Probab=98.12  E-value=1.6e-05  Score=66.86  Aligned_cols=87  Identities=22%  Similarity=0.134  Sum_probs=57.6

Q ss_pred             HHhhccCEEEEEEcCCCCCCCcC-H-HHHHHHh----CCCCEEEEEEcccCCCccch--HHHHHHHHhhcCCCCcEEEee
Q psy15351         10 KHLKNVDIVIEVHDSRMPFTGRN-H-LLQQSVQ----NIRPMVLVLNKRDLINSKHE--SLIEEKVRKEQSHISEVIFTN   81 (352)
Q Consensus        10 ~~i~~aD~vl~VvDar~p~~~~~-~-~l~~~l~----~~k~~ilVlNK~Dl~~~~~~--~~~~~~~~~~~~~~~~v~~iS   81 (352)
                      ..+..+|.+++|+|..++.+..+ . .+..+..    .+.|+++|.||+|+.+....  ....++.++.+.+   ++.+|
T Consensus        68 ~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~---~~~~S  144 (164)
T cd04175          68 LYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWGCA---FLETS  144 (164)
T ss_pred             HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccEEcHHHHHHHHHHhCCE---EEEee
Confidence            35788999999999876533221 1 1122221    46799999999999764321  2222222333444   89999


Q ss_pred             cCCCCCCCHHHHHHHHHHHh
Q psy15351         82 CRNPNCKGVQKILPTLQHIS  101 (352)
Q Consensus        82 a~~~~~~gi~~L~~~i~~~~  101 (352)
                      |+++  .|+++++.++.+.+
T Consensus       145 a~~~--~~v~~~~~~l~~~l  162 (164)
T cd04175         145 AKAK--INVNEIFYDLVRQI  162 (164)
T ss_pred             CCCC--CCHHHHHHHHHHHh
Confidence            9999  99999999987544

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n

>cd04124 RabL2 RabL2 subfamily

Probab=98.12  E-value=5.3e-06  Score=69.77  Aligned_cols=22  Identities=23%  Similarity=0.504  Sum_probs=20.3

Q ss_pred             eEEEEeCCCCCChHHHHHHHhC
Q psy15351        169 TTVMVVGVPNVGKSSIINALRS  190 (352)
Q Consensus       169 ~~v~i~G~pnvGKStliN~l~~  190 (352)
                      ++|+++|.+|||||||++++.+
T Consensus         1 ~ki~vvG~~~vGKTsli~~~~~   22 (161)
T cd04124           1 VKIILLGDSAVGKSKLVERFLM   22 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHh
Confidence            4799999999999999999986

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b

>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases

Probab=98.12  E-value=5.1e-06  Score=69.35  Aligned_cols=55  Identities=18%  Similarity=0.378  Sum_probs=37.5

Q ss_pred             EEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCCcEEEEeCCCCCC
Q psy15351        170 TVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISL  233 (352)
Q Consensus       170 ~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~~  233 (352)
                      +|+++|.+|||||||+|++++.     ......+..|.+....   .. .+..+.++||||...
T Consensus         1 ki~iiG~~~~GKssli~~~~~~-----~~~~~~~t~~~~~~~~---~~-~~~~~~i~D~~G~~~   55 (158)
T cd00878           1 RILILGLDGAGKTTILYKLKLG-----EVVTTIPTIGFNVETV---EY-KNVSFTVWDVGGQDK   55 (158)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcC-----CCCCCCCCcCcceEEE---EE-CCEEEEEEECCCChh
Confidence            4899999999999999999973     2223344444443321   11 234689999999754

Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu

>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily

Probab=98.11  E-value=1.4e-05  Score=70.98  Aligned_cols=85  Identities=13%  Similarity=0.139  Sum_probs=52.6

Q ss_pred             HHHHHHHhhccCEEEEEEcCCCCC-------CCcCHHHHHHHh--CCCCEEEEEEcccCCCc----cchHHHHH----HH
Q psy15351          5 LKDIEKHLKNVDIVIEVHDSRMPF-------TGRNHLLQQSVQ--NIRPMVLVLNKRDLINS----KHESLIEE----KV   67 (352)
Q Consensus         5 ~~~~~~~i~~aD~vl~VvDar~p~-------~~~~~~l~~~l~--~~k~~ilVlNK~Dl~~~----~~~~~~~~----~~   67 (352)
                      +..+...+..+|++++|+|+.++.       .........+..  ..+|+++|+||+|+...    .......+    .+
T Consensus        91 ~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiivvNK~Dl~~~~~~~~~~~~i~~~l~~~l  170 (219)
T cd01883          91 VPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLARTLGVKQLIVAVNKMDDVTVNWSEERYDEIKKELSPFL  170 (219)
T ss_pred             HHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHHHcCCCeEEEEEEccccccccccHHHHHHHHHHHHHHH
Confidence            455667788899999999998742       111122222222  34788999999999842    21222222    33


Q ss_pred             HhhcCC--CCcEEEeecCCCCCCCHH
Q psy15351         68 RKEQSH--ISEVIFTNCRNPNCKGVQ   91 (352)
Q Consensus        68 ~~~~~~--~~~v~~iSa~~~~~~gi~   91 (352)
                      ...+..  ..+++++||+++  .|+.
T Consensus       171 ~~~~~~~~~~~ii~iSA~tg--~gi~  194 (219)
T cd01883         171 KKVGYNPKDVPFIPISGLTG--DNLI  194 (219)
T ss_pred             HHcCCCcCCceEEEeecCcC--CCCC
Confidence            333332  125999999999  8876

EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in

>PRK00007 elongation factor G; Reviewed

Probab=98.11  E-value=6.3e-06  Score=85.36  Aligned_cols=66  Identities=18%  Similarity=0.162  Sum_probs=45.1

Q ss_pred             ceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecC------------CCCCceeEeeeeEEecCCCcEEEEeCCCCCC
Q psy15351        168 NTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVG------------PKAGVTRSVMSQVKISEKPLIYILDTPGISL  233 (352)
Q Consensus       168 ~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~------------~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~~  233 (352)
                      -.+|+++|.+|+|||||+|+|....-.......++            ..+|+|.+.........+..+.|+||||...
T Consensus        10 Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~~~   87 (693)
T PRK00007         10 YRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGHVD   87 (693)
T ss_pred             eeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCcHH
Confidence            35899999999999999999973110000111122            3678888875544445567899999999754

>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=98.11  E-value=1.7e-05  Score=69.42  Aligned_cols=88  Identities=18%  Similarity=0.050  Sum_probs=59.7

Q ss_pred             HHhhccCEEEEEEcCCCCCCCcCH-HHHH-HHh--CCCCEEEEEEcccCCCccchHHHHHHHHhhcCCCCcEEEeecCCC
Q psy15351         10 KHLKNVDIVIEVHDSRMPFTGRNH-LLQQ-SVQ--NIRPMVLVLNKRDLINSKHESLIEEKVRKEQSHISEVIFTNCRNP   85 (352)
Q Consensus        10 ~~i~~aD~vl~VvDar~p~~~~~~-~l~~-~l~--~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~v~~iSa~~~   85 (352)
                      .....+|++|+|+|+.++.+...- .+.. +.+  .+.|+++|.||+|+.......+-.++.+..+..   ++.+||+++
T Consensus        63 ~~~~~ad~~ilV~D~t~~~S~~~i~~w~~~i~~~~~~~piilvgNK~Dl~~~~v~~~~~~~~~~~~~~---~~e~SAk~~  139 (200)
T smart00176       63 GYYIQGQCAIIMFDVTARVTYKNVPNWHRDLVRVCENIPIVLCGNKVDVKDRKVKAKSITFHRKKNLQ---YYDISAKSN  139 (200)
T ss_pred             HHhcCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccCCHHHHHHHHHcCCE---EEEEeCCCC
Confidence            467899999999999876433211 1112 222  467999999999986533222223333334454   889999999


Q ss_pred             CCCCHHHHHHHHHHHhh
Q psy15351         86 NCKGVQKILPTLQHISD  102 (352)
Q Consensus        86 ~~~gi~~L~~~i~~~~~  102 (352)
                        .|+++++.+|.+.+.
T Consensus       140 --~~v~~~F~~l~~~i~  154 (200)
T smart00176      140 --YNFEKPFLWLARKLI  154 (200)
T ss_pred             --CCHHHHHHHHHHHHH
Confidence              999999999986554

Ran is involved in the active transport of proteins through nuclear pores.

>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily

Probab=98.11  E-value=6.8e-06  Score=70.10  Aligned_cols=57  Identities=21%  Similarity=0.337  Sum_probs=39.0

Q ss_pred             cceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCCcEEEEeCCCCC
Q psy15351        167 YNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGIS  232 (352)
Q Consensus       167 ~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~  232 (352)
                      ...+|+++|.+|||||||++++...     ......++.|.+...   +. ..+..+.++||||..
T Consensus        14 ~~~kv~~~G~~~~GKTsl~~~l~~~-----~~~~~~~t~~~~~~~---~~-~~~~~~~l~D~~G~~   70 (174)
T cd04153          14 KEYKVIIVGLDNAGKTTILYQFLLG-----EVVHTSPTIGSNVEE---IV-YKNIRFLMWDIGGQE   70 (174)
T ss_pred             CccEEEEECCCCCCHHHHHHHHccC-----CCCCcCCccccceEE---EE-ECCeEEEEEECCCCH
Confidence            3578999999999999999999862     222334444544321   22 224468999999974

Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.

>cd04123 Rab21 Rab21 subfamily

Probab=98.11  E-value=8.3e-06  Score=67.96  Aligned_cols=58  Identities=22%  Similarity=0.269  Sum_probs=34.7

Q ss_pred             eEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeee-eEEecC-CCcEEEEeCCCCC
Q psy15351        169 TTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMS-QVKISE-KPLIYILDTPGIS  232 (352)
Q Consensus       169 ~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~-~~~~~~-~~~~~l~DtPGi~  232 (352)
                      ++|+++|.+|||||||+|++.+..     ... ...+.++..... .+.... ...+.++||||-.
T Consensus         1 ~ki~i~G~~~~GKStli~~l~~~~-----~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~   60 (162)
T cd04123           1 FKVVLLGEGRVGKTSLVLRYVENK-----FNE-KHESTTQASFFQKTVNIGGKRIDLAIWDTAGQE   60 (162)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCC-----CCC-CcCCccceeEEEEEEEECCEEEEEEEEECCchH
Confidence            479999999999999999999632     111 122222222211 122222 1257899999943

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site

>cd01863 Rab18 Rab18 subfamily

Probab=98.11  E-value=2.1e-05  Score=65.71  Aligned_cols=84  Identities=25%  Similarity=0.095  Sum_probs=57.9

Q ss_pred             HHHhhccCEEEEEEcCCCCCCCcCHHHHHHH-------h-CCCCEEEEEEcccCCCccc-hHHHHHHHHhhcCCCCcEEE
Q psy15351          9 EKHLKNVDIVIEVHDSRMPFTGRNHLLQQSV-------Q-NIRPMVLVLNKRDLINSKH-ESLIEEKVRKEQSHISEVIF   79 (352)
Q Consensus         9 ~~~i~~aD~vl~VvDar~p~~~~~~~l~~~l-------~-~~k~~ilVlNK~Dl~~~~~-~~~~~~~~~~~~~~~~~v~~   79 (352)
                      ...++.+|++++|+|+.++.+..  .+..++       . .+.|+++|.||+|+..... .++..++..+.+..   ++.
T Consensus        67 ~~~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~~~~~~~~~~~~~~~~~~~---~~~  141 (161)
T cd01863          67 SSYYRGAQGVILVYDVTRRDTFT--NLETWLNELETYSTNNDIVKMLVGNKIDKENREVTREEGLKFARKHNML---FIE  141 (161)
T ss_pred             HHHhCCCCEEEEEEECCCHHHHH--hHHHHHHHHHHhCCCCCCcEEEEEECCcccccccCHHHHHHHHHHcCCE---EEE
Confidence            45678999999999998654322  122221       1 4678999999999984332 23333444344444   999


Q ss_pred             eecCCCCCCCHHHHHHHHHH
Q psy15351         80 TNCRNPNCKGVQKILPTLQH   99 (352)
Q Consensus        80 iSa~~~~~~gi~~L~~~i~~   99 (352)
                      +||+++  .|++++++.+.+
T Consensus       142 ~Sa~~~--~gi~~~~~~~~~  159 (161)
T cd01863         142 TSAKTR--DGVQQAFEELVE  159 (161)
T ss_pred             EecCCC--CCHHHHHHHHHH
Confidence            999999  999999988764

Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos

>cd04132 Rho4_like Rho4-like subfamily

Probab=98.11  E-value=1.9e-05  Score=68.00  Aligned_cols=90  Identities=18%  Similarity=0.163  Sum_probs=60.1

Q ss_pred             HHhhccCEEEEEEcCCCCCCCcCH--HHHHHHh---CCCCEEEEEEcccCCCcc------chHHHHHHHHhhcCCCCcEE
Q psy15351         10 KHLKNVDIVIEVHDSRMPFTGRNH--LLQQSVQ---NIRPMVLVLNKRDLINSK------HESLIEEKVRKEQSHISEVI   78 (352)
Q Consensus        10 ~~i~~aD~vl~VvDar~p~~~~~~--~l~~~l~---~~k~~ilVlNK~Dl~~~~------~~~~~~~~~~~~~~~~~~v~   78 (352)
                      ..+..+|++++|+|+.++.+..+.  .+...+.   .+.|+++|.||+|+.+..      ...+..++....+..  +++
T Consensus        68 ~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~--~~~  145 (187)
T cd04132          68 LSYPDVDVLLICYAVDNPTSLDNVEDKWFPEVNHFCPGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQGAF--AYL  145 (187)
T ss_pred             HhCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhhhCccccCCcCHHHHHHHHHHcCCc--EEE
Confidence            357899999999999875433221  1111111   468999999999997642      122333333334442  489


Q ss_pred             EeecCCCCCCCHHHHHHHHHHHhhh
Q psy15351         79 FTNCRNPNCKGVQKILPTLQHISDN  103 (352)
Q Consensus        79 ~iSa~~~~~~gi~~L~~~i~~~~~~  103 (352)
                      .+||+++  .|+++++..+.+.+..
T Consensus       146 e~Sa~~~--~~v~~~f~~l~~~~~~  168 (187)
T cd04132         146 ECSAKTM--ENVEEVFDTAIEEALK  168 (187)
T ss_pred             EccCCCC--CCHHHHHHHHHHHHHh
Confidence            9999999  9999999988766543

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>cd04112 Rab26 Rab26 subfamily

Probab=98.11  E-value=7.4e-06  Score=71.03  Aligned_cols=22  Identities=27%  Similarity=0.554  Sum_probs=20.3

Q ss_pred             eEEEEeCCCCCChHHHHHHHhC
Q psy15351        169 TTVMVVGVPNVGKSSIINALRS  190 (352)
Q Consensus       169 ~~v~i~G~pnvGKStliN~l~~  190 (352)
                      ++|+++|.+|||||||++++.+
T Consensus         1 ~Ki~vvG~~~vGKTSli~~~~~   22 (191)
T cd04112           1 FKVMLLGDSGVGKTCLLVRFKD   22 (191)
T ss_pred             CEEEEECCCCCCHHHHHHHHhc
Confidence            4799999999999999999986

First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04118 Rab24 Rab24 subfamily

Probab=98.10  E-value=1.7e-05  Score=68.63  Aligned_cols=87  Identities=11%  Similarity=0.077  Sum_probs=57.9

Q ss_pred             HhhccCEEEEEEcCCCCCCCcC-HHHHHHHh---CCCCEEEEEEcccCCCccc------hHHHHHHHHhhcCCCCcEEEe
Q psy15351         11 HLKNVDIVIEVHDSRMPFTGRN-HLLQQSVQ---NIRPMVLVLNKRDLINSKH------ESLIEEKVRKEQSHISEVIFT   80 (352)
Q Consensus        11 ~i~~aD~vl~VvDar~p~~~~~-~~l~~~l~---~~k~~ilVlNK~Dl~~~~~------~~~~~~~~~~~~~~~~~v~~i   80 (352)
                      .+..+|++++|+|..++.+..+ ..+.+.+.   .+.|+++|.||+|+.+...      ..+..++....+..   ++.+
T Consensus        70 ~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~---~~~~  146 (193)
T cd04118          70 YYRGAKAAIVCYDLTDSSSFERAKFWVKELQNLEEHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIKAQ---HFET  146 (193)
T ss_pred             hcCCCCEEEEEEECCCHHHHHHHHHHHHHHHhcCCCCCEEEEEEcccccccccccCccCHHHHHHHHHHcCCe---EEEE
Confidence            4678999999999987633211 12222222   3689999999999875321      12222333333443   8899


Q ss_pred             ecCCCCCCCHHHHHHHHHHHhh
Q psy15351         81 NCRNPNCKGVQKILPTLQHISD  102 (352)
Q Consensus        81 Sa~~~~~~gi~~L~~~i~~~~~  102 (352)
                      ||+++  .|++++++++.+.+-
T Consensus       147 Sa~~~--~gv~~l~~~i~~~~~  166 (193)
T cd04118         147 SSKTG--QNVDELFQKVAEDFV  166 (193)
T ss_pred             eCCCC--CCHHHHHHHHHHHHH
Confidence            99999  999999999886553

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita

>cd04142 RRP22 RRP22 subfamily

Probab=98.10  E-value=1.7e-05  Score=69.38  Aligned_cols=89  Identities=22%  Similarity=0.191  Sum_probs=57.9

Q ss_pred             HHHHhhccCEEEEEEcCCCCCCCcC-HHHH-HHHh------CCCCEEEEEEcccCCCccch--HHHHHHHHh-hcCCCCc
Q psy15351          8 IEKHLKNVDIVIEVHDSRMPFTGRN-HLLQ-QSVQ------NIRPMVLVLNKRDLINSKHE--SLIEEKVRK-EQSHISE   76 (352)
Q Consensus         8 ~~~~i~~aD~vl~VvDar~p~~~~~-~~l~-~~l~------~~k~~ilVlNK~Dl~~~~~~--~~~~~~~~~-~~~~~~~   76 (352)
                      ....+..+|++|+|+|+.++.+... ..+. .+..      .+.|+++|.||+|+......  ....++..+ .+.+   
T Consensus        74 ~~~~~~~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~~~~~~~~---  150 (198)
T cd04142          74 RFRGLRNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVRKSWKCG---  150 (198)
T ss_pred             HHhhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccccccHHHHHHHHHHhcCCc---
Confidence            3456789999999999987643321 1121 2221      35799999999999654321  122222222 2444   


Q ss_pred             EEEeecCCCCCCCHHHHHHHHHHHh
Q psy15351         77 VIFTNCRNPNCKGVQKILPTLQHIS  101 (352)
Q Consensus        77 v~~iSa~~~~~~gi~~L~~~i~~~~  101 (352)
                      ++.+||+++  .|++++++.+.+..
T Consensus       151 ~~e~Sak~g--~~v~~lf~~i~~~~  173 (198)
T cd04142         151 YLECSAKYN--WHILLLFKELLISA  173 (198)
T ss_pred             EEEecCCCC--CCHHHHHHHHHHHh
Confidence            899999999  99999998876543

RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.

>smart00173 RAS Ras subfamily of RAS small GTPases

Probab=98.10  E-value=5.1e-06  Score=69.73  Aligned_cols=58  Identities=26%  Similarity=0.311  Sum_probs=35.0

Q ss_pred             eEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeee-eEEecCC-CcEEEEeCCCCCC
Q psy15351        169 TTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMS-QVKISEK-PLIYILDTPGISL  233 (352)
Q Consensus       169 ~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~-~~~~~~~-~~~~l~DtPGi~~  233 (352)
                      ++|+++|.||||||||+|++.+.     ..  ....+.++.+... ....... -.+.++||||...
T Consensus         1 ~ki~v~G~~~~GKTsli~~~~~~-----~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~   60 (164)
T smart00173        1 YKLVVLGSGGVGKSALTIQFVQG-----HF--VDDYDPTIEDSYRKQIEIDGEVCLLDILDTAGQEE   60 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhC-----cC--CcccCCchhhhEEEEEEECCEEEEEEEEECCCccc
Confidence            37999999999999999999863     11  1112222222211 1222211 2467899999754

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades

>cd04110 Rab35 Rab35 subfamily

Probab=98.10  E-value=2.1e-05  Score=68.67  Aligned_cols=87  Identities=15%  Similarity=0.011  Sum_probs=60.6

Q ss_pred             HHHhhccCEEEEEEcCCCCCCCcCHHHHHHH---h---CCCCEEEEEEcccCCCccc--hHHHHHHHHhhcCCCCcEEEe
Q psy15351          9 EKHLKNVDIVIEVHDSRMPFTGRNHLLQQSV---Q---NIRPMVLVLNKRDLINSKH--ESLIEEKVRKEQSHISEVIFT   80 (352)
Q Consensus         9 ~~~i~~aD~vl~VvDar~p~~~~~~~l~~~l---~---~~k~~ilVlNK~Dl~~~~~--~~~~~~~~~~~~~~~~~v~~i   80 (352)
                      ...+..+|++++|+|+.++.+..  .+..++   .   ...|+++|.||+|+.+...  ..+..++.+..+.   +++.+
T Consensus        73 ~~~~~~a~~iilv~D~~~~~s~~--~~~~~~~~i~~~~~~~piivVgNK~Dl~~~~~~~~~~~~~~~~~~~~---~~~e~  147 (199)
T cd04110          73 STYYRGTHGVIVVYDVTNGESFV--NVKRWLQEIEQNCDDVCKVLVGNKNDDPERKVVETEDAYKFAGQMGI---SLFET  147 (199)
T ss_pred             HHHhCCCcEEEEEEECCCHHHHH--HHHHHHHHHHHhCCCCCEEEEEECcccccccccCHHHHHHHHHHcCC---EEEEE
Confidence            45678899999999998764321  222222   1   3578999999999976533  2333344444454   48999


Q ss_pred             ecCCCCCCCHHHHHHHHHHHhh
Q psy15351         81 NCRNPNCKGVQKILPTLQHISD  102 (352)
Q Consensus        81 Sa~~~~~~gi~~L~~~i~~~~~  102 (352)
                      ||+++  .|+++++++|.+.+-
T Consensus       148 Sa~~~--~gi~~lf~~l~~~~~  167 (199)
T cd04110         148 SAKEN--INVEEMFNCITELVL  167 (199)
T ss_pred             ECCCC--cCHHHHHHHHHHHHH
Confidence            99999  999999999876553

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is

>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily

Probab=98.10  E-value=1.7e-05  Score=67.56  Aligned_cols=87  Identities=14%  Similarity=0.041  Sum_probs=59.4

Q ss_pred             HHhhccCEEEEEEcCCCCCCCcCH-HHHHHHh-----CCCCEEEEEEcccCCCccc--hHHHHHHHHhhcCCCCcEEEee
Q psy15351         10 KHLKNVDIVIEVHDSRMPFTGRNH-LLQQSVQ-----NIRPMVLVLNKRDLINSKH--ESLIEEKVRKEQSHISEVIFTN   81 (352)
Q Consensus        10 ~~i~~aD~vl~VvDar~p~~~~~~-~l~~~l~-----~~k~~ilVlNK~Dl~~~~~--~~~~~~~~~~~~~~~~~v~~iS   81 (352)
                      ..+..+|.+++|+|..++.+.... .+...+.     .+.|+++|.||+|+.....  ..+..++.++.+..   ++.+|
T Consensus        69 ~~~~~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~a~~~~~~---~~e~S  145 (172)
T cd04141          69 QYMRCGEGFIICYSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQRQVTTEEGRNLAREFNCP---FFETS  145 (172)
T ss_pred             HHhhcCCEEEEEEECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhcCccCHHHHHHHHHHhCCE---EEEEe
Confidence            457789999999999877544331 1222221     4689999999999865432  12333333344554   88999


Q ss_pred             cCCCCCCCHHHHHHHHHHHh
Q psy15351         82 CRNPNCKGVQKILPTLQHIS  101 (352)
Q Consensus        82 a~~~~~~gi~~L~~~i~~~~  101 (352)
                      |+++  .|++++++++.+.+
T Consensus       146 a~~~--~~v~~~f~~l~~~~  163 (172)
T cd04141         146 AALR--HYIDDAFHGLVREI  163 (172)
T ss_pred             cCCC--CCHHHHHHHHHHHH
Confidence            9999  99999999887544

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign

>cd04149 Arf6 Arf6 subfamily

Probab=98.10  E-value=8e-06  Score=69.34  Aligned_cols=57  Identities=19%  Similarity=0.366  Sum_probs=37.1

Q ss_pred             cceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCCcEEEEeCCCCC
Q psy15351        167 YNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGIS  232 (352)
Q Consensus       167 ~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~  232 (352)
                      +.++|+++|.+|||||||++++...     ......++.|.+..   .+. ...-.+.++||||..
T Consensus         8 ~~~kv~i~G~~~~GKTsli~~l~~~-----~~~~~~~t~g~~~~---~~~-~~~~~~~l~Dt~G~~   64 (168)
T cd04149           8 KEMRILMLGLDAAGKTTILYKLKLG-----QSVTTIPTVGFNVE---TVT-YKNVKFNVWDVGGQD   64 (168)
T ss_pred             CccEEEEECcCCCCHHHHHHHHccC-----CCccccCCcccceE---EEE-ECCEEEEEEECCCCH
Confidence            4589999999999999999999752     21222222232221   111 233468999999975

Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t

>cd04114 Rab30 Rab30 subfamily

Probab=98.10  E-value=2.6e-05  Score=65.71  Aligned_cols=89  Identities=18%  Similarity=0.148  Sum_probs=59.3

Q ss_pred             HHHHhhccCEEEEEEcCCCCCCCcC-HHHHHHHh----CCCCEEEEEEcccCCCccc-hHHHHHHHHhhcCCCCcEEEee
Q psy15351          8 IEKHLKNVDIVIEVHDSRMPFTGRN-HLLQQSVQ----NIRPMVLVLNKRDLINSKH-ESLIEEKVRKEQSHISEVIFTN   81 (352)
Q Consensus         8 ~~~~i~~aD~vl~VvDar~p~~~~~-~~l~~~l~----~~k~~ilVlNK~Dl~~~~~-~~~~~~~~~~~~~~~~~v~~iS   81 (352)
                      ....+..+|++++|+|++++.+... +.+...++    .+.|+++|+||+|+.+... .....+.+.+....  .++.+|
T Consensus        73 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~~~~~i~~~~~~~~~~~~~~--~~~~~S  150 (169)
T cd04114          73 TQSYYRSANALILTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAERREVSQQRAEEFSDAQDM--YYLETS  150 (169)
T ss_pred             HHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcCC--eEEEee
Confidence            4567899999999999986533211 12221122    3578899999999975433 23333444333222  488999


Q ss_pred             cCCCCCCCHHHHHHHHHHH
Q psy15351         82 CRNPNCKGVQKILPTLQHI  100 (352)
Q Consensus        82 a~~~~~~gi~~L~~~i~~~  100 (352)
                      |+++  .|++++++.|.+.
T Consensus       151 a~~~--~gv~~l~~~i~~~  167 (169)
T cd04114         151 AKES--DNVEKLFLDLACR  167 (169)
T ss_pred             CCCC--CCHHHHHHHHHHH
Confidence            9999  9999999988653

Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04136 Rap_like Rap-like subfamily

Probab=98.09  E-value=6.7e-06  Score=68.81  Aligned_cols=58  Identities=24%  Similarity=0.308  Sum_probs=35.2

Q ss_pred             eEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeee-eEEecCC-CcEEEEeCCCCCC
Q psy15351        169 TTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMS-QVKISEK-PLIYILDTPGISL  233 (352)
Q Consensus       169 ~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~-~~~~~~~-~~~~l~DtPGi~~  233 (352)
                      ++|+++|.||||||||+|++...     ..  ....+.|+.+... .+...+. ..+.++||||...
T Consensus         2 ~ki~i~G~~~vGKTsl~~~~~~~-----~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~   61 (163)
T cd04136           2 YKVVVLGSGGVGKSALTVQFVQG-----IF--VEKYDPTIEDSYRKQIEVDGQQCMLEILDTAGTEQ   61 (163)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhC-----CC--CcccCCchhhhEEEEEEECCEEEEEEEEECCCccc
Confidence            68999999999999999999852     11  1222333322111 1222221 1467899999754

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.

>cd00157 Rho Rho (Ras homology) family

Probab=98.09  E-value=6.4e-06  Score=69.52  Aligned_cols=23  Identities=26%  Similarity=0.482  Sum_probs=21.0

Q ss_pred             eEEEEeCCCCCChHHHHHHHhCC
Q psy15351        169 TTVMVVGVPNVGKSSIINALRSS  191 (352)
Q Consensus       169 ~~v~i~G~pnvGKStliN~l~~~  191 (352)
                      ++|+++|.+|||||||+|+|.+.
T Consensus         1 iki~i~G~~~~GKSsli~~l~~~   23 (171)
T cd00157           1 IKIVVVGDGAVGKTCLLISYTTG   23 (171)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhC
Confidence            47999999999999999999963

Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein

>cd04147 Ras_dva Ras-dva subfamily

Probab=98.09  E-value=1.6e-05  Score=69.42  Aligned_cols=88  Identities=17%  Similarity=0.201  Sum_probs=57.8

Q ss_pred             HHhhccCEEEEEEcCCCCCCCcC-HHH-HHHHh----CCCCEEEEEEcccCCCccc---hHHHHHHHH-hhcCCCCcEEE
Q psy15351         10 KHLKNVDIVIEVHDSRMPFTGRN-HLL-QQSVQ----NIRPMVLVLNKRDLINSKH---ESLIEEKVR-KEQSHISEVIF   79 (352)
Q Consensus        10 ~~i~~aD~vl~VvDar~p~~~~~-~~l-~~~l~----~~k~~ilVlNK~Dl~~~~~---~~~~~~~~~-~~~~~~~~v~~   79 (352)
                      ..+..+|++++|+|+.++.+... ..+ ..+..    .+.|+++|+||+|+.+...   .....+... ..+.   .++.
T Consensus        66 ~~~~~ad~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~~~~~~~~~~~~~~---~~~~  142 (198)
T cd04147          66 LSIQNSDAFALVYAVDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPAKDALSTVELDWNC---GFVE  142 (198)
T ss_pred             HHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccccccccHHHHHHHHHhhcCC---cEEE
Confidence            46789999999999987532221 111 12222    3689999999999976321   112222221 1123   3889


Q ss_pred             eecCCCCCCCHHHHHHHHHHHhh
Q psy15351         80 TNCRNPNCKGVQKILPTLQHISD  102 (352)
Q Consensus        80 iSa~~~~~~gi~~L~~~i~~~~~  102 (352)
                      +||+++  .|++++++++.+.+.
T Consensus       143 ~Sa~~g--~gv~~l~~~l~~~~~  163 (198)
T cd04147         143 TSAKDN--ENVLEVFKELLRQAN  163 (198)
T ss_pred             ecCCCC--CCHHHHHHHHHHHhh
Confidence            999999  999999999887654

Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE

Probab=98.08  E-value=2.1e-05  Score=77.09  Aligned_cols=88  Identities=24%  Similarity=0.345  Sum_probs=60.0

Q ss_pred             HHHHHHHHhhccCEEEEEEcCCCCCCCcCHHHHHHHh-CCCCEEEEEEcccCCCccchHHHHHHHHhhcCCCCcEEEeec
Q psy15351          4 GLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQ-NIRPMVLVLNKRDLINSKHESLIEEKVRKEQSHISEVIFTNC   82 (352)
Q Consensus         4 ~~~~~~~~i~~aD~vl~VvDar~p~~~~~~~l~~~l~-~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~v~~iSa   82 (352)
                      +++++...+..+|++++|+|+..+.+..+. +...+. .++|+++|+||+|+.+.+ ...+   .+..+.+   ++.+||
T Consensus       272 gi~~~~~~~~~aD~il~V~D~s~~~s~~~~-~l~~~~~~~~piIlV~NK~Dl~~~~-~~~~---~~~~~~~---~~~vSa  343 (442)
T TIGR00450       272 GIEKSFKAIKQADLVIYVLDASQPLTKDDF-LIIDLNKSKKPFILVLNKIDLKINS-LEFF---VSSKVLN---SSNLSA  343 (442)
T ss_pred             HHHHHHHHHhhCCEEEEEEECCCCCChhHH-HHHHHhhCCCCEEEEEECccCCCcc-hhhh---hhhcCCc---eEEEEE
Confidence            345667888999999999999887654333 222232 578999999999997542 1211   1223343   788999


Q ss_pred             CCCCCCCHHHHHHHHHHHhh
Q psy15351         83 RNPNCKGVQKILPTLQHISD  102 (352)
Q Consensus        83 ~~~~~~gi~~L~~~i~~~~~  102 (352)
                      ++   .|++++++.+.+.+.
T Consensus       344 k~---~gI~~~~~~L~~~i~  360 (442)
T TIGR00450       344 KQ---LKIKALVDLLTQKIN  360 (442)
T ss_pred             ec---CCHHHHHHHHHHHHH
Confidence            86   588888777766553

TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.

>cd04176 Rap2 Rap2 subgroup

Probab=98.08  E-value=1.7e-05  Score=66.46  Aligned_cols=86  Identities=19%  Similarity=0.117  Sum_probs=56.3

Q ss_pred             HHhhccCEEEEEEcCCCCCCCcC-HHHH-HHHh----CCCCEEEEEEcccCCCccch--HHHHHHHHhhcCCCCcEEEee
Q psy15351         10 KHLKNVDIVIEVHDSRMPFTGRN-HLLQ-QSVQ----NIRPMVLVLNKRDLINSKHE--SLIEEKVRKEQSHISEVIFTN   81 (352)
Q Consensus        10 ~~i~~aD~vl~VvDar~p~~~~~-~~l~-~~l~----~~k~~ilVlNK~Dl~~~~~~--~~~~~~~~~~~~~~~~v~~iS   81 (352)
                      ..+.++|++++|.|..++-+..+ ..+. .+.+    .+.|+++|.||+|+.+....  .+.....+..+.   +++.+|
T Consensus        68 ~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~~~~~~~~~~~~~---~~~~~S  144 (163)
T cd04176          68 LYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAEGRALAEEWGC---PFMETS  144 (163)
T ss_pred             HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcCccCHHHHHHHHHHhCC---EEEEec
Confidence            35689999999999987543221 1111 1211    36899999999999754321  222222222344   488999


Q ss_pred             cCCCCCCCHHHHHHHHHHH
Q psy15351         82 CRNPNCKGVQKILPTLQHI  100 (352)
Q Consensus        82 a~~~~~~gi~~L~~~i~~~  100 (352)
                      |+++  .|+.+++.++.+.
T Consensus       145 a~~~--~~v~~l~~~l~~~  161 (163)
T cd04176         145 AKSK--TMVNELFAEIVRQ  161 (163)
T ss_pred             CCCC--CCHHHHHHHHHHh
Confidence            9999  9999999888653

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl

>cd04116 Rab9 Rab9 subfamily

Probab=98.08  E-value=8.3e-06  Score=68.98  Aligned_cols=24  Identities=33%  Similarity=0.438  Sum_probs=22.0

Q ss_pred             cceEEEEeCCCCCChHHHHHHHhC
Q psy15351        167 YNTTVMVVGVPNVGKSSIINALRS  190 (352)
Q Consensus       167 ~~~~v~i~G~pnvGKStliN~l~~  190 (352)
                      ..++|+++|.||||||||++++.+
T Consensus         4 ~~~ki~vvG~~~~GKTsli~~~~~   27 (170)
T cd04116           4 SLLKVILLGDGGVGKSSLMNRYVT   27 (170)
T ss_pred             eEEEEEEECCCCCCHHHHHHHHHc
Confidence            358999999999999999999986

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX

>cd00879 Sar1 Sar1 subfamily

Probab=98.07  E-value=9e-06  Score=70.19  Aligned_cols=57  Identities=16%  Similarity=0.301  Sum_probs=37.3

Q ss_pred             cceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCCcEEEEeCCCCC
Q psy15351        167 YNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGIS  232 (352)
Q Consensus       167 ~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~  232 (352)
                      +..+|+++|.+|||||||+|++.+.     ......++.+.+..   .+. ..+..+.++||||-.
T Consensus        18 ~~~ki~ilG~~~~GKStLi~~l~~~-----~~~~~~~T~~~~~~---~i~-~~~~~~~l~D~~G~~   74 (190)
T cd00879          18 KEAKILFLGLDNAGKTTLLHMLKDD-----RLAQHVPTLHPTSE---ELT-IGNIKFKTFDLGGHE   74 (190)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcC-----CCcccCCccCcceE---EEE-ECCEEEEEEECCCCH
Confidence            4688999999999999999999863     22222222332221   122 234468899999953

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.

>PRK12317 elongation factor 1-alpha; Reviewed

Probab=98.07  E-value=1.9e-05  Score=77.33  Aligned_cols=87  Identities=11%  Similarity=0.020  Sum_probs=56.6

Q ss_pred             HHHHHHHHhhccCEEEEEEcCCC--CCCCcCHHHHHHHh-CC-CCEEEEEEcccCCCccc--h----HHHHHHHHhhcCC
Q psy15351          4 GLKDIEKHLKNVDIVIEVHDSRM--PFTGRNHLLQQSVQ-NI-RPMVLVLNKRDLINSKH--E----SLIEEKVRKEQSH   73 (352)
Q Consensus         4 ~~~~~~~~i~~aD~vl~VvDar~--p~~~~~~~l~~~l~-~~-k~~ilVlNK~Dl~~~~~--~----~~~~~~~~~~~~~   73 (352)
                      .++.+...+..+|++++|+|+++  ++.........++. .+ +|+++|+||+|+.+...  .    ++..+++...+..
T Consensus        97 ~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~~~~~iivviNK~Dl~~~~~~~~~~~~~~i~~~l~~~g~~  176 (425)
T PRK12317         97 FVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTLGINQLIVAINKMDAVNYDEKRYEEVKEEVSKLLKMVGYK  176 (425)
T ss_pred             chhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHcCCCeEEEEEEccccccccHHHHHHHHHHHHHHHHhhCCC
Confidence            34556667789999999999998  44444434333333 34 46899999999986321  1    2333334333432


Q ss_pred             --CCcEEEeecCCCCCCCHHH
Q psy15351         74 --ISEVIFTNCRNPNCKGVQK   92 (352)
Q Consensus        74 --~~~v~~iSa~~~~~~gi~~   92 (352)
                        ..+++++||+++  .|+.+
T Consensus       177 ~~~~~ii~iSA~~g--~gi~~  195 (425)
T PRK12317        177 PDDIPFIPVSAFEG--DNVVK  195 (425)
T ss_pred             cCcceEEEeecccC--CCccc
Confidence              125899999999  99876

>cd00876 Ras Ras family

Probab=98.07  E-value=6e-06  Score=68.68  Aligned_cols=57  Identities=25%  Similarity=0.252  Sum_probs=36.5

Q ss_pred             EEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCC--CcEEEEeCCCCCC
Q psy15351        170 TVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEK--PLIYILDTPGISL  233 (352)
Q Consensus       170 ~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~--~~~~l~DtPGi~~  233 (352)
                      +|+++|.+|||||||+|++.+.     .  ..+..+.++.+.........+  -.+.++||||...
T Consensus         1 ki~i~G~~~~GKTsli~~l~~~-----~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~   59 (160)
T cd00876           1 KVVVLGAGGVGKSAITIQFVKG-----T--FVEEYDPTIEDSYRKTIVVDGETYTLDILDTAGQEE   59 (160)
T ss_pred             CEEEECCCCCCHHHHHHHHHhC-----C--CCcCcCCChhHeEEEEEEECCEEEEEEEEECCChHH
Confidence            4899999999999999999862     1  233334444433322222221  2478999999654

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m

>PRK12735 elongation factor Tu; Reviewed

Probab=98.07  E-value=6.6e-06  Score=79.70  Aligned_cols=68  Identities=19%  Similarity=0.229  Sum_probs=46.3

Q ss_pred             cCcceEEEEeCCCCCChHHHHHHHhCCCCC--CCC--------ceecCCCCCceeEeeeeEEecCCCcEEEEeCCCCC
Q psy15351        165 EVYNTTVMVVGVPNVGKSSIINALRSSHMK--KGK--------AVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGIS  232 (352)
Q Consensus       165 ~~~~~~v~i~G~pnvGKStliN~l~~~~~~--~~~--------~~~~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~  232 (352)
                      ..+.++|+++|.+|+|||||+|+|++....  ...        ........|+|.+.........+.++.|+||||..
T Consensus         9 ~~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~   86 (396)
T PRK12735          9 TKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHA   86 (396)
T ss_pred             CCCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHH
Confidence            467799999999999999999999852100  000        00112367888887543333445579999999973

>cd04114 Rab30 Rab30 subfamily

Probab=98.07  E-value=1.3e-05  Score=67.62  Aligned_cols=60  Identities=23%  Similarity=0.403  Sum_probs=36.1

Q ss_pred             cceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeee-eEEecCC-CcEEEEeCCCCC
Q psy15351        167 YNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMS-QVKISEK-PLIYILDTPGIS  232 (352)
Q Consensus       167 ~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~-~~~~~~~-~~~~l~DtPGi~  232 (352)
                      ...+|+++|.+|||||||++++.+..      ......|..+.+... .+...+. -.+.++||||..
T Consensus         6 ~~~~v~v~G~~~~GKSsli~~l~~~~------~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~   67 (169)
T cd04114           6 FLFKIVLIGNAGVGKTCLVRRFTQGL------FPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQE   67 (169)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHhCC------CCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcH
Confidence            35889999999999999999998521      111122222222222 1222221 246789999964

Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>PRK00049 elongation factor Tu; Reviewed

Probab=98.06  E-value=3e-05  Score=75.10  Aligned_cols=100  Identities=13%  Similarity=0.067  Sum_probs=67.4

Q ss_pred             hHHHHHHHHhhccCEEEEEEcCCCCCCCcCHHHHHHHh-CCCCEE-EEEEcccCCCccch-H----HHHHHHHhhcCC--
Q psy15351          3 RGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQ-NIRPMV-LVLNKRDLINSKHE-S----LIEEKVRKEQSH--   73 (352)
Q Consensus         3 ~~~~~~~~~i~~aD~vl~VvDar~p~~~~~~~l~~~l~-~~k~~i-lVlNK~Dl~~~~~~-~----~~~~~~~~~~~~--   73 (352)
                      +.++++...+..+|++++|+|++.+.......+..++. .+.|.+ +++||+|+++.+.. +    +..+++...++.  
T Consensus        87 ~f~~~~~~~~~~aD~~llVVDa~~g~~~qt~~~~~~~~~~g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l~~~~~~~~  166 (396)
T PRK00049         87 DYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDFPGD  166 (396)
T ss_pred             HHHHHHHhhhccCCEEEEEEECCCCCchHHHHHHHHHHHcCCCEEEEEEeecCCcchHHHHHHHHHHHHHHHHhcCCCcc
Confidence            45677788899999999999999877665555555555 678876 57999999864321 1    223334333331  


Q ss_pred             CCcEEEeecCCCC--------CCCHHHHHHHHHHHhh
Q psy15351         74 ISEVIFTNCRNPN--------CKGVQKILPTLQHISD  102 (352)
Q Consensus        74 ~~~v~~iSa~~~~--------~~gi~~L~~~i~~~~~  102 (352)
                      ..+++++||.++.        .+|+..|++.|.+.++
T Consensus       167 ~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~~~  203 (396)
T PRK00049        167 DTPIIRGSALKALEGDDDEEWEKKILELMDAVDSYIP  203 (396)
T ss_pred             CCcEEEeecccccCCCCcccccccHHHHHHHHHhcCC
Confidence            2358999998761        1156788888877654

>TIGR00487 IF-2 translation initiation factor IF-2

Probab=98.06  E-value=8.8e-06  Score=82.29  Aligned_cols=62  Identities=27%  Similarity=0.480  Sum_probs=44.8

Q ss_pred             CcceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeee-EEecCCCcEEEEeCCCCCC
Q psy15351        166 VYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQ-VKISEKPLIYILDTPGISL  233 (352)
Q Consensus       166 ~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~-~~~~~~~~~~l~DtPGi~~  233 (352)
                      .++.+|+++|.+|+|||||+|+|++.      ....+..+|+|.+.... +.+.++..+.|+||||...
T Consensus        85 ~r~p~V~I~Ghvd~GKTSLl~~l~~~------~v~~~e~~GIT~~ig~~~v~~~~~~~i~~iDTPGhe~  147 (587)
T TIGR00487        85 ERPPVVTIMGHVDHGKTSLLDSIRKT------KVAQGEAGGITQHIGAYHVENEDGKMITFLDTPGHEA  147 (587)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHhC------CcccccCCceeecceEEEEEECCCcEEEEEECCCCcc
Confidence            35678999999999999999999862      23345567888775432 2222333799999999754

This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.

>PTZ00369 Ras-like protein; Provisional

Probab=98.06  E-value=2.2e-05  Score=67.88  Aligned_cols=88  Identities=16%  Similarity=0.094  Sum_probs=58.4

Q ss_pred             HHhhccCEEEEEEcCCCCCCCcC--HHHHHHHh----CCCCEEEEEEcccCCCccc--hHHHHHHHHhhcCCCCcEEEee
Q psy15351         10 KHLKNVDIVIEVHDSRMPFTGRN--HLLQQSVQ----NIRPMVLVLNKRDLINSKH--ESLIEEKVRKEQSHISEVIFTN   81 (352)
Q Consensus        10 ~~i~~aD~vl~VvDar~p~~~~~--~~l~~~l~----~~k~~ilVlNK~Dl~~~~~--~~~~~~~~~~~~~~~~~v~~iS   81 (352)
                      ..+..+|++++|+|+.++.+..+  ..+..+..    .+.|+++|.||+|+.+...  ..+..++.+..+.   +++.+|
T Consensus        72 ~~~~~~d~iilv~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~~~~~~~~~~~~~---~~~e~S  148 (189)
T PTZ00369         72 QYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSERQVSTGEGQELAKSFGI---PFLETS  148 (189)
T ss_pred             HHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHhCC---EEEEee
Confidence            46778999999999987643211  11112221    3679999999999865432  2223333333344   489999


Q ss_pred             cCCCCCCCHHHHHHHHHHHhh
Q psy15351         82 CRNPNCKGVQKILPTLQHISD  102 (352)
Q Consensus        82 a~~~~~~gi~~L~~~i~~~~~  102 (352)
                      |+++  .|+++++.++.+.+.
T Consensus       149 ak~~--~gi~~~~~~l~~~l~  167 (189)
T PTZ00369        149 AKQR--VNVDEAFYELVREIR  167 (189)
T ss_pred             CCCC--CCHHHHHHHHHHHHH
Confidence            9999  999999998876554

>cd04140 ARHI_like ARHI subfamily

Probab=98.06  E-value=8.2e-06  Score=68.79  Aligned_cols=59  Identities=25%  Similarity=0.296  Sum_probs=35.1

Q ss_pred             eEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEec-CCCcEEEEeCCCCCC
Q psy15351        169 TTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKIS-EKPLIYILDTPGISL  233 (352)
Q Consensus       169 ~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~-~~~~~~l~DtPGi~~  233 (352)
                      ++|+++|.+|||||||+|++.+.....   ......+.+++..   .... ..-.+.++||||...
T Consensus         2 ~kv~~vG~~~vGKTsli~~~~~~~f~~---~~~~t~~~~~~~~---~~~~~~~~~l~i~Dt~G~~~   61 (165)
T cd04140           2 YRVVVFGAGGVGKSSLVLRFVKGTFRE---SYIPTIEDTYRQV---ISCSKNICTLQITDTTGSHQ   61 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCC---CcCCcchheEEEE---EEECCEEEEEEEEECCCCCc
Confidence            689999999999999999998632211   1111112222111   1111 112478999999754

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to

>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily

Probab=98.06  E-value=7.9e-06  Score=69.86  Aligned_cols=22  Identities=32%  Similarity=0.466  Sum_probs=20.5

Q ss_pred             eEEEEeCCCCCChHHHHHHHhC
Q psy15351        169 TTVMVVGVPNVGKSSIINALRS  190 (352)
Q Consensus       169 ~~v~i~G~pnvGKStliN~l~~  190 (352)
                      .+|+++|.||||||||++++.+
T Consensus         2 ~kv~l~G~~g~GKTtl~~~~~~   23 (180)
T cd04137           2 RKIAVLGSRSVGKSSLTVQFVE   23 (180)
T ss_pred             eEEEEECCCCCCHHHHHHHHHh
Confidence            4799999999999999999986

Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le

>cd04177 RSR1 RSR1 subgroup

Probab=98.06  E-value=8.1e-06  Score=69.05  Aligned_cols=22  Identities=27%  Similarity=0.457  Sum_probs=20.7

Q ss_pred             eEEEEeCCCCCChHHHHHHHhC
Q psy15351        169 TTVMVVGVPNVGKSSIINALRS  190 (352)
Q Consensus       169 ~~v~i~G~pnvGKStliN~l~~  190 (352)
                      ++|+++|.|||||||+++++.+
T Consensus         2 ~ki~liG~~~~GKTsli~~~~~   23 (168)
T cd04177           2 YKIVVLGAGGVGKSALTVQFVQ   23 (168)
T ss_pred             eEEEEECCCCCCHHHHHHHHHh
Confidence            6799999999999999999985

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu

>PRK12739 elongation factor G; Reviewed

Probab=98.06  E-value=6.2e-06  Score=85.46  Aligned_cols=66  Identities=20%  Similarity=0.189  Sum_probs=45.2

Q ss_pred             ceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecC------------CCCCceeEeeeeEEecCCCcEEEEeCCCCCC
Q psy15351        168 NTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVG------------PKAGVTRSVMSQVKISEKPLIYILDTPGISL  233 (352)
Q Consensus       168 ~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~------------~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~~  233 (352)
                      -.+|+++|.+|+|||||+|+|....-.......+.            ..+|+|.+.........+.++.|+||||...
T Consensus         8 irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~~   85 (691)
T PRK12739          8 TRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGHVD   85 (691)
T ss_pred             eeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCHHH
Confidence            46799999999999999999974210001111122            2678888876544445667899999999754

>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily

Probab=98.05  E-value=1.1e-05  Score=68.16  Aligned_cols=85  Identities=24%  Similarity=0.204  Sum_probs=55.2

Q ss_pred             HHHhhccCEEEEEEcCCCCCCCc--CHHHHHHHh--CCCCEEEEEEcccCCCccchHHHHHHH------HhhcCCCCcEE
Q psy15351          9 EKHLKNVDIVIEVHDSRMPFTGR--NHLLQQSVQ--NIRPMVLVLNKRDLINSKHESLIEEKV------RKEQSHISEVI   78 (352)
Q Consensus         9 ~~~i~~aD~vl~VvDar~p~~~~--~~~l~~~l~--~~k~~ilVlNK~Dl~~~~~~~~~~~~~------~~~~~~~~~v~   78 (352)
                      ...+..+|++++|+|+.++.+..  ...+.+++.  .+.|+++|.||+|+.......+..+.+      ++.+.   .++
T Consensus        62 ~~~~~~ad~ii~V~D~t~~~s~~~~~~~l~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~---~~~  138 (164)
T cd04162          62 KRYLSGSQGLIFVVDSADSERLPLARQELHQLLQHPPDLPLVVLANKQDLPAARSVQEIHKELELEPIARGRRW---ILQ  138 (164)
T ss_pred             HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHhCCCCCcEEEEEeCcCCcCCCCHHHHHHHhCChhhcCCCce---EEE
Confidence            35789999999999998764221  122333432  578999999999997654444333222      11223   266


Q ss_pred             EeecCC------CCCCCHHHHHHHHH
Q psy15351         79 FTNCRN------PNCKGVQKILPTLQ   98 (352)
Q Consensus        79 ~iSa~~------~~~~gi~~L~~~i~   98 (352)
                      .+||++      +  +|++++++.+.
T Consensus       139 ~~Sa~~~~s~~~~--~~v~~~~~~~~  162 (164)
T cd04162         139 GTSLDDDGSPSRM--EAVKDLLSQLI  162 (164)
T ss_pred             EeeecCCCChhHH--HHHHHHHHHHh
Confidence            778877      7  88888877653

Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.

>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=98.05  E-value=9e-06  Score=68.83  Aligned_cols=60  Identities=17%  Similarity=0.216  Sum_probs=36.2

Q ss_pred             eEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEec-CCCcEEEEeCCCCCC
Q psy15351        169 TTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKIS-EKPLIYILDTPGISL  233 (352)
Q Consensus       169 ~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~-~~~~~~l~DtPGi~~  233 (352)
                      ++|+++|.+|||||||+|++.....    .....+..|....... +... ..-.+.++||||...
T Consensus         1 ~ki~vvG~~~vGKTsli~~~~~~~~----~~~~~~t~~~~~~~~~-~~~~~~~~~l~i~Dt~G~~~   61 (166)
T cd00877           1 FKLVLVGDGGTGKTTFVKRHLTGEF----EKKYVATLGVEVHPLD-FHTNRGKIRFNVWDTAGQEK   61 (166)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCC----CCCCCCceeeEEEEEE-EEECCEEEEEEEEECCCChh
Confidence            4799999999999999999985211    1222333333322211 1111 112578999999754

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is

>cd04122 Rab14 Rab14 subfamily

Probab=98.05  E-value=1e-05  Score=68.22  Aligned_cols=22  Identities=23%  Similarity=0.475  Sum_probs=20.8

Q ss_pred             eEEEEeCCCCCChHHHHHHHhC
Q psy15351        169 TTVMVVGVPNVGKSSIINALRS  190 (352)
Q Consensus       169 ~~v~i~G~pnvGKStliN~l~~  190 (352)
                      ++|+++|.+|||||||++++.+
T Consensus         3 ~ki~iiG~~~vGKTsli~~~~~   24 (166)
T cd04122           3 FKYIIIGDMGVGKSCLLHQFTE   24 (166)
T ss_pred             eEEEEECCCCCCHHHHHHHHhc
Confidence            6899999999999999999986

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT

>cd04144 Ras2 Ras2 subfamily

Probab=98.04  E-value=3.4e-05  Score=66.79  Aligned_cols=88  Identities=16%  Similarity=0.121  Sum_probs=58.8

Q ss_pred             HHhhccCEEEEEEcCCCCCCCcC-HHHHHHHh-------CCCCEEEEEEcccCCCccc--hHHHHHHHHhhcCCCCcEEE
Q psy15351         10 KHLKNVDIVIEVHDSRMPFTGRN-HLLQQSVQ-------NIRPMVLVLNKRDLINSKH--ESLIEEKVRKEQSHISEVIF   79 (352)
Q Consensus        10 ~~i~~aD~vl~VvDar~p~~~~~-~~l~~~l~-------~~k~~ilVlNK~Dl~~~~~--~~~~~~~~~~~~~~~~~v~~   79 (352)
                      ..+..+|++|+|+|..++.+... ..+...+.       .+.|+++|.||+|+.....  .....++.+..+..   ++.
T Consensus        66 ~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~---~~e  142 (190)
T cd04144          66 QWIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEGAALARRLGCE---FIE  142 (190)
T ss_pred             HHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHHHHHHHHHhCCE---EEE
Confidence            46789999999999976543221 11211121       2579999999999975432  12222333333444   899


Q ss_pred             eecCCCCCCCHHHHHHHHHHHhh
Q psy15351         80 TNCRNPNCKGVQKILPTLQHISD  102 (352)
Q Consensus        80 iSa~~~~~~gi~~L~~~i~~~~~  102 (352)
                      +||+++  .|++++++++.+.+.
T Consensus       143 ~SAk~~--~~v~~l~~~l~~~l~  163 (190)
T cd04144         143 ASAKTN--VNVERAFYTLVRALR  163 (190)
T ss_pred             ecCCCC--CCHHHHHHHHHHHHH
Confidence            999999  999999999886554

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>cd04155 Arl3 Arl3 subfamily

Probab=98.04  E-value=2.7e-05  Score=65.94  Aligned_cols=88  Identities=18%  Similarity=0.161  Sum_probs=57.0

Q ss_pred             HHHhhccCEEEEEEcCCCCCCCc--CHHHHHHHh----CCCCEEEEEEcccCCCccchHHHHHHHHhhcCC--CCcEEEe
Q psy15351          9 EKHLKNVDIVIEVHDSRMPFTGR--NHLLQQSVQ----NIRPMVLVLNKRDLINSKHESLIEEKVRKEQSH--ISEVIFT   80 (352)
Q Consensus         9 ~~~i~~aD~vl~VvDar~p~~~~--~~~l~~~l~----~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~--~~~v~~i   80 (352)
                      ...++.+|.+++|+|+.++....  ...+...++    .+.|+++++||+|+......++..+.+.-....  ..+++.+
T Consensus        76 ~~~~~~~~~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~i~~~l~~~~~~~~~~~~~~~  155 (173)
T cd04155          76 RNYFENTDCLIYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAAPAEEIAEALNLHDLRDRTWHIQAC  155 (173)
T ss_pred             HHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCCCHHHHHHHcCCcccCCCeEEEEEe
Confidence            35578999999999998642211  112222222    368999999999997655444444433211110  0136789


Q ss_pred             ecCCCCCCCHHHHHHHHH
Q psy15351         81 NCRNPNCKGVQKILPTLQ   98 (352)
Q Consensus        81 Sa~~~~~~gi~~L~~~i~   98 (352)
                      ||+++  +|+++++++|.
T Consensus       156 Sa~~~--~gi~~~~~~l~  171 (173)
T cd04155         156 SAKTG--EGLQEGMNWVC  171 (173)
T ss_pred             ECCCC--CCHHHHHHHHh
Confidence            99999  99999999875

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.

>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional

Probab=98.04  E-value=3.1e-05  Score=79.52  Aligned_cols=88  Identities=19%  Similarity=0.148  Sum_probs=59.1

Q ss_pred             hHHHHHHHHhhccCEEEEEEcCCCCCCCcCHHHHHHHh--CCCCEEEEEEcccCCCcc--chHHHHHH----HHhhcCCC
Q psy15351          3 RGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQ--NIRPMVLVLNKRDLINSK--HESLIEEK----VRKEQSHI   74 (352)
Q Consensus         3 ~~~~~~~~~i~~aD~vl~VvDar~p~~~~~~~l~~~l~--~~k~~ilVlNK~Dl~~~~--~~~~~~~~----~~~~~~~~   74 (352)
                      +..+.+...+..+|++++|+|+..++.....+...++.  ..+++++|+||+|+++.+  ..++..+.    +++.++..
T Consensus       116 ~f~~~~~~~~~~aD~~llVvda~~g~~~~t~e~~~~~~~~~~~~iivvvNK~D~~~~~~~~~~~i~~~i~~~~~~~~~~~  195 (632)
T PRK05506        116 QYTRNMVTGASTADLAIILVDARKGVLTQTRRHSFIASLLGIRHVVLAVNKMDLVDYDQEVFDEIVADYRAFAAKLGLHD  195 (632)
T ss_pred             HHHHHHHHHHHhCCEEEEEEECCCCccccCHHHHHHHHHhCCCeEEEEEEecccccchhHHHHHHHHHHHHHHHHcCCCC
Confidence            34556777889999999999999887665554444443  346788899999998522  22222222    23334332


Q ss_pred             CcEEEeecCCCCCCCHHH
Q psy15351         75 SEVIFTNCRNPNCKGVQK   92 (352)
Q Consensus        75 ~~v~~iSa~~~~~~gi~~   92 (352)
                      .+++++||+++  .|+.+
T Consensus       196 ~~iipiSA~~g--~ni~~  211 (632)
T PRK05506        196 VTFIPISALKG--DNVVT  211 (632)
T ss_pred             ccEEEEecccC--CCccc
Confidence            35899999999  88763

>cd04118 Rab24 Rab24 subfamily

Probab=98.04  E-value=8.8e-06  Score=70.49  Aligned_cols=22  Identities=27%  Similarity=0.526  Sum_probs=20.5

Q ss_pred             eEEEEeCCCCCChHHHHHHHhC
Q psy15351        169 TTVMVVGVPNVGKSSIINALRS  190 (352)
Q Consensus       169 ~~v~i~G~pnvGKStliN~l~~  190 (352)
                      ++|+++|.||||||||+|++.+
T Consensus         1 ~ki~vvG~~~vGKSsLi~~~~~   22 (193)
T cd04118           1 VKVVMLGKESVGKTSLVERYVH   22 (193)
T ss_pred             CEEEEECCCCCCHHHHHHHHHh
Confidence            4799999999999999999996

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita

>cd04140 ARHI_like ARHI subfamily

Probab=98.04  E-value=2.9e-05  Score=65.39  Aligned_cols=85  Identities=14%  Similarity=0.082  Sum_probs=56.4

Q ss_pred             HHhhccCEEEEEEcCCCCCCCcC-HHHHHHHh-------CCCCEEEEEEcccCCCccch--HHHHHHHHhhcCCCCcEEE
Q psy15351         10 KHLKNVDIVIEVHDSRMPFTGRN-HLLQQSVQ-------NIRPMVLVLNKRDLINSKHE--SLIEEKVRKEQSHISEVIF   79 (352)
Q Consensus        10 ~~i~~aD~vl~VvDar~p~~~~~-~~l~~~l~-------~~k~~ilVlNK~Dl~~~~~~--~~~~~~~~~~~~~~~~v~~   79 (352)
                      .....+|.+++|.|..++.+... ..+.+.++       .+.|+++|.||+|+.+....  .+...+....+..   ++.
T Consensus        68 ~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~---~~e  144 (165)
T cd04140          68 LSISKGHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEGAACATEWNCA---FME  144 (165)
T ss_pred             HHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHHHHHHHHHhCCc---EEE
Confidence            45678999999999987643221 12222221       35799999999999763321  2222222233443   889


Q ss_pred             eecCCCCCCCHHHHHHHHHH
Q psy15351         80 TNCRNPNCKGVQKILPTLQH   99 (352)
Q Consensus        80 iSa~~~~~~gi~~L~~~i~~   99 (352)
                      +||+++  .|+++++++|.+
T Consensus       145 ~SA~~g--~~v~~~f~~l~~  162 (165)
T cd04140         145 TSAKTN--HNVQELFQELLN  162 (165)
T ss_pred             eecCCC--CCHHHHHHHHHh
Confidence            999999  999999998864

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to

>cd04110 Rab35 Rab35 subfamily

Probab=98.04  E-value=1.2e-05  Score=70.24  Aligned_cols=61  Identities=23%  Similarity=0.309  Sum_probs=37.1

Q ss_pred             cceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCC-CcEEEEeCCCCC
Q psy15351        167 YNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEK-PLIYILDTPGIS  232 (352)
Q Consensus       167 ~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~-~~~~l~DtPGi~  232 (352)
                      ..++|+++|.+|||||||++++.+...    .....++.|..... ..+...+. ..+.++||||-.
T Consensus         5 ~~~kivvvG~~~vGKTsli~~l~~~~~----~~~~~~t~~~~~~~-~~~~~~~~~~~l~l~D~~G~~   66 (199)
T cd04110           5 HLFKLLIIGDSGVGKSSLLLRFADNTF----SGSYITTIGVDFKI-RTVEINGERVKLQIWDTAGQE   66 (199)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhcCCC----CCCcCccccceeEE-EEEEECCEEEEEEEEeCCCch
Confidence            358999999999999999999986321    11222333322211 12222221 247899999954

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is

>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily

Probab=98.03  E-value=1.1e-05  Score=68.33  Aligned_cols=54  Identities=30%  Similarity=0.537  Sum_probs=37.4

Q ss_pred             EEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCCcEEEEeCCCCC
Q psy15351        170 TVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGIS  232 (352)
Q Consensus       170 ~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~  232 (352)
                      +|+++|.+|||||||+|.+.+.     ......++.|.++..   +.. .+..+.++||||-.
T Consensus         1 ~i~~~G~~~~GKTsl~~~l~~~-----~~~~~~~t~g~~~~~---~~~-~~~~~~i~D~~G~~   54 (167)
T cd04161           1 TLLTVGLDNAGKTTLVSALQGE-----IPKKVAPTVGFTPTK---LRL-DKYEVCIFDLGGGA   54 (167)
T ss_pred             CEEEECCCCCCHHHHHHHHhCC-----CCccccCcccceEEE---EEE-CCEEEEEEECCCcH
Confidence            4789999999999999999862     223344555655332   222 34468899999953

Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.

>PRK04213 GTP-binding protein; Provisional

Probab=98.03  E-value=4.3e-05  Score=66.62  Aligned_cols=87  Identities=11%  Similarity=0.109  Sum_probs=56.1

Q ss_pred             HhhccCEEEEEEcCCCCCCC-----------cCHHHHHHHh-CCCCEEEEEEcccCCCcc--chHHHHHHHHhhcC--CC
Q psy15351         11 HLKNVDIVIEVHDSRMPFTG-----------RNHLLQQSVQ-NIRPMVLVLNKRDLINSK--HESLIEEKVRKEQS--HI   74 (352)
Q Consensus        11 ~i~~aD~vl~VvDar~p~~~-----------~~~~l~~~l~-~~k~~ilVlNK~Dl~~~~--~~~~~~~~~~~~~~--~~   74 (352)
                      .+..+|++++|+|+......           .+..+...+. .+.|+++|+||+|+.+..  ...++.+.+   +.  .+
T Consensus        87 ~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~---~~~~~~  163 (201)
T PRK04213         87 NADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRELGIPPIVAVNKMDKIKNRDEVLDEIAERL---GLYPPW  163 (201)
T ss_pred             hhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHHcCCCeEEEEECccccCcHHHHHHHHHHHh---cCCccc
Confidence            45667899999998643211           1122334433 578999999999997654  122232222   22  10


Q ss_pred             ----CcEEEeecCCCCCCCHHHHHHHHHHHhhh
Q psy15351         75 ----SEVIFTNCRNPNCKGVQKILPTLQHISDN  103 (352)
Q Consensus        75 ----~~v~~iSa~~~~~~gi~~L~~~i~~~~~~  103 (352)
                          .+++.+||+++   |+++++++|.+.+++
T Consensus       164 ~~~~~~~~~~SA~~g---gi~~l~~~l~~~~~~  193 (201)
T PRK04213        164 RQWQDIIAPISAKKG---GIEELKEAIRKRLHE  193 (201)
T ss_pred             cccCCcEEEEecccC---CHHHHHHHHHHhhcC
Confidence                13789999985   999999999876654

>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily

Probab=98.02  E-value=1.3e-05  Score=68.92  Aligned_cols=59  Identities=17%  Similarity=0.347  Sum_probs=36.5

Q ss_pred             ceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEec--CCCcEEEEeCCCCC
Q psy15351        168 NTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKIS--EKPLIYILDTPGIS  232 (352)
Q Consensus       168 ~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~--~~~~~~l~DtPGi~  232 (352)
                      .++|+++|.+|||||||++++...     ......++.|.+..... +...  .+-.+.++||||..
T Consensus         3 ~~kv~~vG~~~~GKTsli~~~~~~-----~~~~~~~t~~~~~~~~~-~~~~~~~~~~l~l~Dt~G~~   63 (183)
T cd04152           3 SLHIVMLGLDSAGKTTVLYRLKFN-----EFVNTVPTKGFNTEKIK-VSLGNSKGITFHFWDVGGQE   63 (183)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcC-----CcCCcCCccccceeEEE-eeccCCCceEEEEEECCCcH
Confidence            478999999999999999999862     21111222333322211 1111  22358899999964

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.

>cd04158 ARD1 ARD1 subfamily

Probab=98.02  E-value=1e-05  Score=68.59  Aligned_cols=55  Identities=18%  Similarity=0.183  Sum_probs=35.0

Q ss_pred             EEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCCcEEEEeCCCCCC
Q psy15351        170 TVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISL  233 (352)
Q Consensus       170 ~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~~  233 (352)
                      +|+++|.+|||||||+|++.+.     ..  ..  +..|...........+-.+.++||||...
T Consensus         1 ~vvlvG~~~~GKTsl~~~l~~~-----~~--~~--~~~T~~~~~~~~~~~~~~i~l~Dt~G~~~   55 (169)
T cd04158           1 RVVTLGLDGAGKTTILFKLKQD-----EF--MQ--PIPTIGFNVETVEYKNLKFTIWDVGGKHK   55 (169)
T ss_pred             CEEEECCCCCCHHHHHHHHhcC-----CC--CC--cCCcCceeEEEEEECCEEEEEEECCCChh
Confidence            4889999999999999999862     11  11  22233222111122334688999999754

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra

>cd04169 RF3 RF3 subfamily

Probab=98.02  E-value=1.5e-05  Score=73.03  Aligned_cols=21  Identities=24%  Similarity=0.502  Sum_probs=19.6

Q ss_pred             EEEEeCCCCCChHHHHHHHhC
Q psy15351        170 TVMVVGVPNVGKSSIINALRS  190 (352)
Q Consensus       170 ~v~i~G~pnvGKStliN~l~~  190 (352)
                      +|+++|.+|+|||||+|+|+.
T Consensus         4 ni~ivGh~~~GKTTL~e~ll~   24 (267)
T cd04169           4 TFAIISHPDAGKTTLTEKLLL   24 (267)
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            599999999999999999984

Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.

>cd04148 RGK RGK subfamily

Probab=98.01  E-value=2.3e-05  Score=69.70  Aligned_cols=84  Identities=19%  Similarity=0.113  Sum_probs=57.2

Q ss_pred             ccCEEEEEEcCCCCCCCcC-HHHHHHH-h----CCCCEEEEEEcccCCCccch--HHHHHHHHhhcCCCCcEEEeecCCC
Q psy15351         14 NVDIVIEVHDSRMPFTGRN-HLLQQSV-Q----NIRPMVLVLNKRDLINSKHE--SLIEEKVRKEQSHISEVIFTNCRNP   85 (352)
Q Consensus        14 ~aD~vl~VvDar~p~~~~~-~~l~~~l-~----~~k~~ilVlNK~Dl~~~~~~--~~~~~~~~~~~~~~~~v~~iSa~~~   85 (352)
                      .+|++++|+|+.++.+... ..+...+ .    .+.|+++|.||+|+.+...+  ++..+.....+..   ++.+||+++
T Consensus        72 ~ad~iilV~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~a~~~~~~---~~e~SA~~~  148 (221)
T cd04148          72 QGDAFVVVYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSREVSVQEGRACAVVFDCK---FIETSAGLQ  148 (221)
T ss_pred             CCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccceecHHHHHHHHHHcCCe---EEEecCCCC
Confidence            8999999999987643221 1222222 1    36899999999999765432  2222222233444   889999999


Q ss_pred             CCCCHHHHHHHHHHHhh
Q psy15351         86 NCKGVQKILPTLQHISD  102 (352)
Q Consensus        86 ~~~gi~~L~~~i~~~~~  102 (352)
                        .|++++++++.+.+.
T Consensus       149 --~gv~~l~~~l~~~~~  163 (221)
T cd04148         149 --HNVDELLEGIVRQIR  163 (221)
T ss_pred             --CCHHHHHHHHHHHHH
Confidence              999999999987665

The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra

>cd04128 Spg1 Spg1p

Probab=98.01  E-value=2.4e-05  Score=67.37  Aligned_cols=88  Identities=16%  Similarity=0.104  Sum_probs=55.8

Q ss_pred             HHhhccCEEEEEEcCCCCCCCcC--HHHHHHHh--CCCCEEEEEEcccCCCc---cc---hHHHH-HHHHhhcCCCCcEE
Q psy15351         10 KHLKNVDIVIEVHDSRMPFTGRN--HLLQQSVQ--NIRPMVLVLNKRDLINS---KH---ESLIE-EKVRKEQSHISEVI   78 (352)
Q Consensus        10 ~~i~~aD~vl~VvDar~p~~~~~--~~l~~~l~--~~k~~ilVlNK~Dl~~~---~~---~~~~~-~~~~~~~~~~~~v~   78 (352)
                      ..+..+|++++|+|+.++.+..+  ..+.++.+  ...+.++|.||+||...   ..   ..+.. ++.+..+.   +++
T Consensus        68 ~~~~~a~~iilv~D~t~~~s~~~i~~~~~~~~~~~~~~~pilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~---~~~  144 (182)
T cd04128          68 LVCNDAVAILFMFDLTRKSTLNSIKEWYRQARGFNKTAIPILVGTKYDLFADLPPEEQEEITKQARKYAKAMKA---PLI  144 (182)
T ss_pred             HHCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhccccccchhhhhhHHHHHHHHHHcCC---EEE
Confidence            45789999999999987644322  22222222  22233789999999631   11   11122 22223343   489


Q ss_pred             EeecCCCCCCCHHHHHHHHHHHhh
Q psy15351         79 FTNCRNPNCKGVQKILPTLQHISD  102 (352)
Q Consensus        79 ~iSa~~~~~~gi~~L~~~i~~~~~  102 (352)
                      .+||+++  .|++++++++.+.+.
T Consensus       145 e~SAk~g--~~v~~lf~~l~~~l~  166 (182)
T cd04128         145 FCSTSHS--INVQKIFKIVLAKAF  166 (182)
T ss_pred             EEeCCCC--CCHHHHHHHHHHHHH
Confidence            9999999  999999998876554

Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are

>cd04151 Arl1 Arl1 subfamily

Probab=98.01  E-value=1.2e-05  Score=67.25  Aligned_cols=55  Identities=22%  Similarity=0.383  Sum_probs=34.5

Q ss_pred             EEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCCcEEEEeCCCCCC
Q psy15351        170 TVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISL  233 (352)
Q Consensus       170 ~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~~  233 (352)
                      +|+++|.+|||||||++++...     ......+.-|.+..   .+. ..+..+.++||||...
T Consensus         1 kv~lvG~~~~GKTsl~~~l~~~-----~~~~~~~t~~~~~~---~~~-~~~~~~~i~Dt~G~~~   55 (158)
T cd04151           1 RILILGLDNAGKTTILYRLQLG-----EVVTTIPTIGFNVE---TVT-YKNLKFQVWDLGGQTS   55 (158)
T ss_pred             CEEEECCCCCCHHHHHHHHccC-----CCcCcCCccCcCeE---EEE-ECCEEEEEEECCCCHH
Confidence            4899999999999999999752     22122222222211   111 2334689999999753

Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.

>cd01893 Miro1 Miro1 subfamily

Probab=98.01  E-value=1.2e-05  Score=67.81  Aligned_cols=59  Identities=25%  Similarity=0.278  Sum_probs=34.5

Q ss_pred             eEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCCcEEEEeCCCCCC
Q psy15351        169 TTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISL  233 (352)
Q Consensus       169 ~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~~  233 (352)
                      ++|+++|.+|||||||+|++.+..... .  .....+.+|....  + ....-.+.++||||...
T Consensus         1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~-~--~~~~~~~~~~~~~--~-~~~~~~~~i~Dt~G~~~   59 (166)
T cd01893           1 VRIVLIGDEGVGKSSLIMSLVSEEFPE-N--VPRVLPEITIPAD--V-TPERVPTTIVDTSSRPQ   59 (166)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCcCCc-c--CCCcccceEeeee--e-cCCeEEEEEEeCCCchh
Confidence            379999999999999999998632110 0  0001122222211  1 11223578999999753

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha

Probab=98.01  E-value=3e-05  Score=75.95  Aligned_cols=88  Identities=15%  Similarity=0.088  Sum_probs=56.0

Q ss_pred             hHHHHHHHHhhccCEEEEEEcCCCCCCCcCH---HHHHHHh--CCCCEEEEEEcccCCCcc--c----hHHHHHHHHhhc
Q psy15351          3 RGLKDIEKHLKNVDIVIEVHDSRMPFTGRNH---LLQQSVQ--NIRPMVLVLNKRDLINSK--H----ESLIEEKVRKEQ   71 (352)
Q Consensus         3 ~~~~~~~~~i~~aD~vl~VvDar~p~~~~~~---~l~~~l~--~~k~~ilVlNK~Dl~~~~--~----~~~~~~~~~~~~   71 (352)
                      +.++.+...+..+|++++|+|++++.+...+   ....+.+  ..+++++|+||+|+.+..  .    .+++.++++..+
T Consensus        97 ~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~~~~~iIVviNK~Dl~~~~~~~~~~~~~ei~~~~~~~g  176 (426)
T TIGR00483        97 DFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTLGINQLIVAINKMDSVNYDEEEFEAIKKEVSNLIKKVG  176 (426)
T ss_pred             HHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHcCCCeEEEEEEChhccCccHHHHHHHHHHHHHHHHHcC
Confidence            3455666677899999999999987322222   1112222  335788999999998522  1    233444444444


Q ss_pred             CC--CCcEEEeecCCCCCCCHHH
Q psy15351         72 SH--ISEVIFTNCRNPNCKGVQK   92 (352)
Q Consensus        72 ~~--~~~v~~iSa~~~~~~gi~~   92 (352)
                      ..  ..+++.+||+++  .|+.+
T Consensus       177 ~~~~~~~~i~iSA~~g--~ni~~  197 (426)
T TIGR00483       177 YNPDTVPFIPISAWNG--DNVIK  197 (426)
T ss_pred             CCcccceEEEeecccc--ccccc
Confidence            32  125899999999  99875

This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.

>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily

Probab=98.01  E-value=1.4e-05  Score=67.76  Aligned_cols=60  Identities=22%  Similarity=0.308  Sum_probs=35.3

Q ss_pred             ceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCC-CcEEEEeCCCCC
Q psy15351        168 NTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEK-PLIYILDTPGIS  232 (352)
Q Consensus       168 ~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~-~~~~l~DtPGi~  232 (352)
                      .++|+++|.+|||||||++++.....    .....+..|..... ..+...+. -.+.++||||..
T Consensus         2 ~~ki~vvG~~~vGKTsli~~~~~~~~----~~~~~~t~~~~~~~-~~~~~~~~~~~~~i~Dt~G~~   62 (170)
T cd04115           2 IFKIIVIGDSNVGKTCLTYRFCAGRF----PERTEATIGVDFRE-RTVEIDGERIKVQLWDTAGQE   62 (170)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCCC----CCccccceeEEEEE-EEEEECCeEEEEEEEeCCChH
Confidence            36899999999999999999986311    11112222211111 12222221 257899999954

Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine

>cd04125 RabA_like RabA-like subfamily

Probab=98.01  E-value=1.2e-05  Score=69.47  Aligned_cols=59  Identities=27%  Similarity=0.370  Sum_probs=35.6

Q ss_pred             eEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCC-CcEEEEeCCCCC
Q psy15351        169 TTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEK-PLIYILDTPGIS  232 (352)
Q Consensus       169 ~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~-~~~~l~DtPGi~  232 (352)
                      ++|+++|.+|||||||+|++.+...    .....+..|.+.... .+...+. -.+.++||||..
T Consensus         1 ~ki~v~G~~~vGKSsli~~~~~~~~----~~~~~~t~~~~~~~~-~~~~~~~~~~~~i~Dt~g~~   60 (188)
T cd04125           1 FKVVIIGDYGVGKSSLLKRFTEDEF----SESTKSTIGVDFKIK-TVYIENKIIKLQIWDTNGQE   60 (188)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCC----CCCCCCceeeEEEEE-EEEECCEEEEEEEEECCCcH
Confidence            4799999999999999999986311    111233333332221 2222221 146789999954

RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>PLN03127 Elongation factor Tu; Provisional

Probab=98.00  E-value=1.3e-05  Score=78.67  Aligned_cols=68  Identities=19%  Similarity=0.212  Sum_probs=47.1

Q ss_pred             cCcceEEEEeCCCCCChHHHHHHHhCCCC--CCC--------CceecCCCCCceeEeeeeEEecCCCcEEEEeCCCCC
Q psy15351        165 EVYNTTVMVVGVPNVGKSSIINALRSSHM--KKG--------KAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGIS  232 (352)
Q Consensus       165 ~~~~~~v~i~G~pnvGKStliN~l~~~~~--~~~--------~~~~~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~  232 (352)
                      ..+.++|+++|.+++|||||+++|.+...  +..        ........+|+|++.........+.++.|+||||..
T Consensus        58 ~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~  135 (447)
T PLN03127         58 TKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHA  135 (447)
T ss_pred             CCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCcc
Confidence            45779999999999999999999973210  000        001122348999997654444445679999999985

>TIGR00485 EF-Tu translation elongation factor TU

Probab=98.00  E-value=3.8e-05  Score=74.43  Aligned_cols=97  Identities=11%  Similarity=0.062  Sum_probs=62.0

Q ss_pred             hHHHHHHHHhhccCEEEEEEcCCCCCCCcCHHHHHHHh-CCCCEE-EEEEcccCCCccch-----HHHHHHHHhhcCCC-
Q psy15351          3 RGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQ-NIRPMV-LVLNKRDLINSKHE-----SLIEEKVRKEQSHI-   74 (352)
Q Consensus         3 ~~~~~~~~~i~~aD~vl~VvDar~p~~~~~~~l~~~l~-~~k~~i-lVlNK~Dl~~~~~~-----~~~~~~~~~~~~~~-   74 (352)
                      +.+..+...+..+|++++|+|++.+......+...++. .+.|.+ +++||+|+++++..     .+..++++..+... 
T Consensus        87 ~f~~~~~~~~~~~D~~ilVvda~~g~~~qt~e~l~~~~~~gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~l~~~~~~~~  166 (394)
T TIGR00485        87 DYVKNMITGAAQMDGAILVVSATDGPMPQTREHILLARQVGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSEYDFPGD  166 (394)
T ss_pred             HHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEecccCCHHHHHHHHHHHHHHHHHhcCCCcc
Confidence            45567777888999999999999876554444444444 567765 68999999875432     12334444434211 


Q ss_pred             -CcEEEeecCCCCCC--------CHHHHHHHHHHHh
Q psy15351         75 -SEVIFTNCRNPNCK--------GVQKILPTLQHIS  101 (352)
Q Consensus        75 -~~v~~iSa~~~~~~--------gi~~L~~~i~~~~  101 (352)
                       .+++++||.++  .        ++..|++.+.+..
T Consensus       167 ~~~ii~vSa~~g--~~g~~~~~~~~~~ll~~l~~~~  200 (394)
T TIGR00485       167 DTPIIRGSALKA--LEGDAEWEAKILELMDAVDEYI  200 (394)
T ss_pred             CccEEECccccc--cccCCchhHhHHHHHHHHHhcC
Confidence             25899999876  3        3345555555443

This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>PLN03118 Rab family protein; Provisional

Probab=98.00  E-value=4.8e-05  Score=67.05  Aligned_cols=90  Identities=16%  Similarity=0.047  Sum_probs=60.4

Q ss_pred             HHHhhccCEEEEEEcCCCCCCCcCH--HHHHHHh-----CCCCEEEEEEcccCCCccc--hHHHHHHHHhhcCCCCcEEE
Q psy15351          9 EKHLKNVDIVIEVHDSRMPFTGRNH--LLQQSVQ-----NIRPMVLVLNKRDLINSKH--ESLIEEKVRKEQSHISEVIF   79 (352)
Q Consensus         9 ~~~i~~aD~vl~VvDar~p~~~~~~--~l~~~l~-----~~k~~ilVlNK~Dl~~~~~--~~~~~~~~~~~~~~~~~v~~   79 (352)
                      ...+..+|++|+|+|+.++.+..+.  .+...+.     .+.|+++|.||+|+.....  .....++..+.+..   ++.
T Consensus        80 ~~~~~~~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~~~~~~~~~~~~~~---~~e  156 (211)
T PLN03118         80 SSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVSREEGMALAKEHGCL---FLE  156 (211)
T ss_pred             HHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCE---EEE
Confidence            4567899999999999875332211  1111121     2468999999999975433  22333333334443   889


Q ss_pred             eecCCCCCCCHHHHHHHHHHHhhh
Q psy15351         80 TNCRNPNCKGVQKILPTLQHISDN  103 (352)
Q Consensus        80 iSa~~~~~~gi~~L~~~i~~~~~~  103 (352)
                      +||+++  .|+++++++|.+.+.+
T Consensus       157 ~SAk~~--~~v~~l~~~l~~~~~~  178 (211)
T PLN03118        157 CSAKTR--ENVEQCFEELALKIME  178 (211)
T ss_pred             EeCCCC--CCHHHHHHHHHHHHHh
Confidence            999999  9999999999876654

>cd04130 Wrch_1 Wrch-1 subfamily

Probab=98.00  E-value=2.5e-05  Score=66.46  Aligned_cols=83  Identities=17%  Similarity=0.187  Sum_probs=55.8

Q ss_pred             HhhccCEEEEEEcCCCCCCCcC--HHHHHHHh---CCCCEEEEEEcccCCCccc--------------hHHHHHHHHhhc
Q psy15351         11 HLKNVDIVIEVHDSRMPFTGRN--HLLQQSVQ---NIRPMVLVLNKRDLINSKH--------------ESLIEEKVRKEQ   71 (352)
Q Consensus        11 ~i~~aD~vl~VvDar~p~~~~~--~~l~~~l~---~~k~~ilVlNK~Dl~~~~~--------------~~~~~~~~~~~~   71 (352)
                      .+..+|++++|.|..++.+...  ..+...+.   .+.|+++|.||+|+.+...              .++..++.++.+
T Consensus        68 ~~~~a~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~  147 (173)
T cd04130          68 CYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHNPKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIG  147 (173)
T ss_pred             ccCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhC
Confidence            5678999999999987644322  12222222   4689999999999975321              122333333334


Q ss_pred             CCCCcEEEeecCCCCCCCHHHHHHHH
Q psy15351         72 SHISEVIFTNCRNPNCKGVQKILPTL   97 (352)
Q Consensus        72 ~~~~~v~~iSa~~~~~~gi~~L~~~i   97 (352)
                      ..  .++.+||+++  .|++++++.+
T Consensus       148 ~~--~~~e~Sa~~~--~~v~~lf~~~  169 (173)
T cd04130         148 AC--EYIECSALTQ--KNLKEVFDTA  169 (173)
T ss_pred             CC--eEEEEeCCCC--CCHHHHHHHH
Confidence            42  5899999999  9999998765

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,

>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional

Probab=98.00  E-value=3.2e-05  Score=76.52  Aligned_cols=89  Identities=15%  Similarity=0.139  Sum_probs=58.8

Q ss_pred             hHHHHHHHHhhccCEEEEEEcCCCCCCCcCHHHHHHHh--CCCCEEEEEEcccCCCccc--hHHHHHHH----Hhhc-CC
Q psy15351          3 RGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQ--NIRPMVLVLNKRDLINSKH--ESLIEEKV----RKEQ-SH   73 (352)
Q Consensus         3 ~~~~~~~~~i~~aD~vl~VvDar~p~~~~~~~l~~~l~--~~k~~ilVlNK~Dl~~~~~--~~~~~~~~----~~~~-~~   73 (352)
                      +..+.+...+..+|++++|+|++.++.........++.  ..+++++++||+|+++.+.  ..+..+.+    ...+ ..
T Consensus       119 ~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~~l~~~lg~~~iIvvvNKiD~~~~~~~~~~~i~~~l~~~~~~~~~~~  198 (474)
T PRK05124        119 QYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFIATLLGIKHLVVAVNKMDLVDYSEEVFERIREDYLTFAEQLPGNL  198 (474)
T ss_pred             HHHHHHHHHHhhCCEEEEEEECCCCccccchHHHHHHHHhCCCceEEEEEeeccccchhHHHHHHHHHHHHHHHhcCCCC
Confidence            34566777789999999999999877654443333332  3467889999999985322  23333333    2222 22


Q ss_pred             CCcEEEeecCCCCCCCHHHH
Q psy15351         74 ISEVIFTNCRNPNCKGVQKI   93 (352)
Q Consensus        74 ~~~v~~iSa~~~~~~gi~~L   93 (352)
                      ..+++++||+++  .|+.++
T Consensus       199 ~~~iipvSA~~g--~ni~~~  216 (474)
T PRK05124        199 DIRFVPLSALEG--DNVVSQ  216 (474)
T ss_pred             CceEEEEEeecC--CCcccc
Confidence            246999999999  888653

>cd04126 Rab20 Rab20 subfamily

Probab=97.99  E-value=3.8e-05  Score=68.27  Aligned_cols=91  Identities=12%  Similarity=0.000  Sum_probs=58.6

Q ss_pred             HHhhccCEEEEEEcCCCCCCCcC--HHHHHHHh---CCCCEEEEEEcccCCCc-------------------cc--hHHH
Q psy15351         10 KHLKNVDIVIEVHDSRMPFTGRN--HLLQQSVQ---NIRPMVLVLNKRDLINS-------------------KH--ESLI   63 (352)
Q Consensus        10 ~~i~~aD~vl~VvDar~p~~~~~--~~l~~~l~---~~k~~ilVlNK~Dl~~~-------------------~~--~~~~   63 (352)
                      .....+|++|+|+|++++.+..+  ..+..+.+   .+.|+++|.||+||...                   ..  .++.
T Consensus        63 ~~~~~ad~~IlV~Dvt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~  142 (220)
T cd04126          63 MYCRGAAAVILTYDVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDA  142 (220)
T ss_pred             HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccccccccccccccccccccCCHHHH
Confidence            35789999999999987643322  11222222   35789999999999751                   11  2334


Q ss_pred             HHHHHhhcCC-----------CCcEEEeecCCCCCCCHHHHHHHHHHHhh
Q psy15351         64 EEKVRKEQSH-----------ISEVIFTNCRNPNCKGVQKILPTLQHISD  102 (352)
Q Consensus        64 ~~~~~~~~~~-----------~~~v~~iSa~~~~~~gi~~L~~~i~~~~~  102 (352)
                      .++.++.+..           -.+++.+||+++  .|+++++..+.+.+.
T Consensus       143 ~~~a~~~~~~~~~~~~~~~~~~~~~~E~SA~tg--~~V~elf~~i~~~~~  190 (220)
T cd04126         143 KAFYKRINKYKMLDEDLSPAAEKMCFETSAKTG--YNVDELFEYLFNLVL  190 (220)
T ss_pred             HHHHHHhCccccccccccccccceEEEeeCCCC--CCHHHHHHHHHHHHH
Confidence            4443333200           014789999999  999999988875443

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo

>cd04132 Rho4_like Rho4-like subfamily

Probab=97.99  E-value=1.9e-05  Score=67.93  Aligned_cols=22  Identities=23%  Similarity=0.433  Sum_probs=20.5

Q ss_pred             eEEEEeCCCCCChHHHHHHHhC
Q psy15351        169 TTVMVVGVPNVGKSSIINALRS  190 (352)
Q Consensus       169 ~~v~i~G~pnvGKStliN~l~~  190 (352)
                      ++|+++|.+|||||||+|++.+
T Consensus         1 ~ki~vvG~~~vGKTsli~~l~~   22 (187)
T cd04132           1 KKIVVVGDGGCGKTCLLIVYSQ   22 (187)
T ss_pred             CeEEEECCCCCCHHHHHHHHHh
Confidence            4799999999999999999986

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>CHL00189 infB translation initiation factor 2; Provisional

Probab=97.99  E-value=5.2e-05  Score=78.19  Aligned_cols=91  Identities=16%  Similarity=0.181  Sum_probs=62.0

Q ss_pred             HHHHhhccCEEEEEEcCCCCCCCcCHHHHHHHh-CCCCEEEEEEcccCCCccchHHHHHHHHhhcC------CCCcEEEe
Q psy15351          8 IEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQ-NIRPMVLVLNKRDLINSKHESLIEEKVRKEQS------HISEVIFT   80 (352)
Q Consensus         8 ~~~~i~~aD~vl~VvDar~p~~~~~~~l~~~l~-~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~------~~~~v~~i   80 (352)
                      ....+..+|++|+|+|+.++......+....+. .+.|+++++||+|+.... .....+.+...+.      ...+++++
T Consensus       312 r~rg~~~aDiaILVVDA~dGv~~QT~E~I~~~k~~~iPiIVViNKiDl~~~~-~e~v~~eL~~~~ll~e~~g~~vpvv~V  390 (742)
T CHL00189        312 RSRGANVTDIAILIIAADDGVKPQTIEAINYIQAANVPIIVAINKIDKANAN-TERIKQQLAKYNLIPEKWGGDTPMIPI  390 (742)
T ss_pred             HHHHHHHCCEEEEEEECcCCCChhhHHHHHHHHhcCceEEEEEECCCccccC-HHHHHHHHHHhccchHhhCCCceEEEE
Confidence            345789999999999998865544333333343 678999999999997543 1222222221110      01258999


Q ss_pred             ecCCCCCCCHHHHHHHHHHHh
Q psy15351         81 NCRNPNCKGVQKILPTLQHIS  101 (352)
Q Consensus        81 Sa~~~~~~gi~~L~~~i~~~~  101 (352)
                      ||+++  .|+.+|+++|..+.
T Consensus       391 SAktG--~GIdeLle~I~~l~  409 (742)
T CHL00189        391 SASQG--TNIDKLLETILLLA  409 (742)
T ss_pred             ECCCC--CCHHHHHHhhhhhh
Confidence            99999  99999999887654

>PLN03071 GTP-binding nuclear protein Ran; Provisional

Probab=97.98  E-value=1.7e-05  Score=70.43  Aligned_cols=63  Identities=19%  Similarity=0.211  Sum_probs=41.2

Q ss_pred             CcceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecC-CCcEEEEeCCCCCC
Q psy15351        166 VYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISE-KPLIYILDTPGISL  233 (352)
Q Consensus       166 ~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~-~~~~~l~DtPGi~~  233 (352)
                      ...++|+++|.+|||||||++++...    .......++.|.+..... +.... .-.+.++||||...
T Consensus        11 ~~~~Ki~vvG~~gvGKTsli~~~~~~----~f~~~~~~tig~~~~~~~-~~~~~~~~~l~i~Dt~G~~~   74 (219)
T PLN03071         11 YPSFKLVIVGDGGTGKTTFVKRHLTG----EFEKKYEPTIGVEVHPLD-FFTNCGKIRFYCWDTAGQEK   74 (219)
T ss_pred             CCceEEEEECcCCCCHHHHHHHHhhC----CCCCccCCccceeEEEEE-EEECCeEEEEEEEECCCchh
Confidence            45689999999999999999998752    122234455555544322 21221 22688999999754

>PTZ00133 ADP-ribosylation factor; Provisional

Probab=97.98  E-value=1.7e-05  Score=68.26  Aligned_cols=57  Identities=21%  Similarity=0.363  Sum_probs=36.9

Q ss_pred             cceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCCcEEEEeCCCCC
Q psy15351        167 YNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGIS  232 (352)
Q Consensus       167 ~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~  232 (352)
                      ..++|+++|.+|||||||++++...     ......++.|....   .+. ..+-.+.++||||..
T Consensus        16 ~~~kv~lvG~~~vGKTsli~~~~~~-----~~~~~~~T~~~~~~---~~~-~~~~~~~l~D~~G~~   72 (182)
T PTZ00133         16 KEVRILMVGLDAAGKTTILYKLKLG-----EVVTTIPTIGFNVE---TVE-YKNLKFTMWDVGGQD   72 (182)
T ss_pred             CccEEEEEcCCCCCHHHHHHHHhcC-----CccccCCccccceE---EEE-ECCEEEEEEECCCCH
Confidence            4589999999999999999999641     21222223332221   122 233468999999974

>PLN03127 Elongation factor Tu; Provisional

Probab=97.98  E-value=5.2e-05  Score=74.46  Aligned_cols=98  Identities=13%  Similarity=0.030  Sum_probs=64.9

Q ss_pred             hHHHHHHHHhhccCEEEEEEcCCCCCCCcCHHHHHHHh-CCCCE-EEEEEcccCCCccchHH-----HHHHHHhhcCC--
Q psy15351          3 RGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQ-NIRPM-VLVLNKRDLINSKHESL-----IEEKVRKEQSH--   73 (352)
Q Consensus         3 ~~~~~~~~~i~~aD~vl~VvDar~p~~~~~~~l~~~l~-~~k~~-ilVlNK~Dl~~~~~~~~-----~~~~~~~~~~~--   73 (352)
                      +.+.++...+..+|++++|+|++.+......++..++. .+.|. ++++||+|+++.+...+     +.+.+...++.  
T Consensus       136 ~f~~~~~~g~~~aD~allVVda~~g~~~qt~e~l~~~~~~gip~iIvviNKiDlv~~~~~~~~i~~~i~~~l~~~~~~~~  215 (447)
T PLN03127        136 DYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVVFLNKVDVVDDEELLELVEMELRELLSFYKFPGD  215 (447)
T ss_pred             chHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEeeccCCHHHHHHHHHHHHHHHHHHhCCCCC
Confidence            45677778888999999999999887666656655555 57784 68899999986433222     22223222221  


Q ss_pred             CCcEEEeecC---CCCCCC-------HHHHHHHHHHHhh
Q psy15351         74 ISEVIFTNCR---NPNCKG-------VQKILPTLQHISD  102 (352)
Q Consensus        74 ~~~v~~iSa~---~~~~~g-------i~~L~~~i~~~~~  102 (352)
                      ..+++++|+.   ++  .|       +..|++.+.+.++
T Consensus       216 ~vpiip~Sa~sa~~g--~n~~~~~~~i~~Ll~~l~~~lp  252 (447)
T PLN03127        216 EIPIIRGSALSALQG--TNDEIGKNAILKLMDAVDEYIP  252 (447)
T ss_pred             cceEEEeccceeecC--CCcccccchHHHHHHHHHHhCC
Confidence            1247777775   34  44       6788888887765

>cd00157 Rho Rho (Ras homology) family

Probab=97.98  E-value=2.2e-05  Score=66.16  Aligned_cols=85  Identities=15%  Similarity=0.171  Sum_probs=56.6

Q ss_pred             HhhccCEEEEEEcCCCCCCCcC--HHHHHHHh---CCCCEEEEEEcccCCCccch-------------HHHHHHHHhhcC
Q psy15351         11 HLKNVDIVIEVHDSRMPFTGRN--HLLQQSVQ---NIRPMVLVLNKRDLINSKHE-------------SLIEEKVRKEQS   72 (352)
Q Consensus        11 ~i~~aD~vl~VvDar~p~~~~~--~~l~~~l~---~~k~~ilVlNK~Dl~~~~~~-------------~~~~~~~~~~~~   72 (352)
                      .+..+|++++|+|+.++.+...  ..+...+.   .+.|+++|+||+|+.+....             ....++....+.
T Consensus        68 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  147 (171)
T cd00157          68 SYPNTDVFLICFSVDSPSSFENVKTKWIPEIRHYCPNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGA  147 (171)
T ss_pred             hcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCC
Confidence            4578999999999987533221  11222221   46999999999999866532             122233333343


Q ss_pred             CCCcEEEeecCCCCCCCHHHHHHHHHH
Q psy15351         73 HISEVIFTNCRNPNCKGVQKILPTLQH   99 (352)
Q Consensus        73 ~~~~v~~iSa~~~~~~gi~~L~~~i~~   99 (352)
                      .  +++.+||+++  .|++++++.|.+
T Consensus       148 ~--~~~~~Sa~~~--~gi~~l~~~i~~  170 (171)
T cd00157         148 I--GYMECSALTQ--EGVKEVFEEAIR  170 (171)
T ss_pred             e--EEEEeecCCC--CCHHHHHHHHhh
Confidence            2  5899999999  999999988753

Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein

>PRK12735 elongation factor Tu; Reviewed

Probab=97.98  E-value=4.9e-05  Score=73.65  Aligned_cols=100  Identities=12%  Similarity=0.047  Sum_probs=65.6

Q ss_pred             hHHHHHHHHhhccCEEEEEEcCCCCCCCcCHHHHHHHh-CCCCEE-EEEEcccCCCccchH-----HHHHHHHhhcCC--
Q psy15351          3 RGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQ-NIRPMV-LVLNKRDLINSKHES-----LIEEKVRKEQSH--   73 (352)
Q Consensus         3 ~~~~~~~~~i~~aD~vl~VvDar~p~~~~~~~l~~~l~-~~k~~i-lVlNK~Dl~~~~~~~-----~~~~~~~~~~~~--   73 (352)
                      +.++.+...+..+|++++|+|+..++.....++..++. .+.|.+ +++||+|+++.+...     +..++++..+..  
T Consensus        87 ~f~~~~~~~~~~aD~~llVvda~~g~~~qt~e~l~~~~~~gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l~~~~~~~~  166 (396)
T PRK12735         87 DYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDFPGD  166 (396)
T ss_pred             HHHHHHHhhhccCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEecCCcchHHHHHHHHHHHHHHHHHcCCCcC
Confidence            44677888899999999999999866544444444443 577866 579999998643221     233334333321  


Q ss_pred             CCcEEEeecCCCC--------CCCHHHHHHHHHHHhh
Q psy15351         74 ISEVIFTNCRNPN--------CKGVQKILPTLQHISD  102 (352)
Q Consensus        74 ~~~v~~iSa~~~~--------~~gi~~L~~~i~~~~~  102 (352)
                      ..+++++||.++.        ..++..|++.|.+.++
T Consensus       167 ~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~~  203 (396)
T PRK12735        167 DTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYIP  203 (396)
T ss_pred             ceeEEecchhccccCCCCCcccccHHHHHHHHHhcCC
Confidence            1258999998871        0257788888877665

>cd04101 RabL4 RabL4 (Rab-like4) subfamily

Probab=97.97  E-value=2.3e-05  Score=65.77  Aligned_cols=22  Identities=36%  Similarity=0.611  Sum_probs=20.2

Q ss_pred             eEEEEeCCCCCChHHHHHHHhC
Q psy15351        169 TTVMVVGVPNVGKSSIINALRS  190 (352)
Q Consensus       169 ~~v~i~G~pnvGKStliN~l~~  190 (352)
                      ++|+++|.+|||||||++++..
T Consensus         1 ~ki~vvG~~~~GKtsl~~~l~~   22 (164)
T cd04101           1 LRCAVVGDPAVGKTAFVQMFHS   22 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHhc
Confidence            4799999999999999999984

RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.

>PLN03071 GTP-binding nuclear protein Ran; Provisional

Probab=97.97  E-value=2.7e-05  Score=69.14  Aligned_cols=87  Identities=17%  Similarity=0.087  Sum_probs=58.5

Q ss_pred             HhhccCEEEEEEcCCCCCCCcC-HHHHHHHh---CCCCEEEEEEcccCCCccchHHHHHHHHhhcCCCCcEEEeecCCCC
Q psy15351         11 HLKNVDIVIEVHDSRMPFTGRN-HLLQQSVQ---NIRPMVLVLNKRDLINSKHESLIEEKVRKEQSHISEVIFTNCRNPN   86 (352)
Q Consensus        11 ~i~~aD~vl~VvDar~p~~~~~-~~l~~~l~---~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~v~~iSa~~~~   86 (352)
                      ....+|++|+|+|..++.+..+ ..+...+.   .+.|+++|.||+|+........-.++.++.+..   ++.+||+++ 
T Consensus        82 ~~~~~~~~ilvfD~~~~~s~~~i~~w~~~i~~~~~~~piilvgNK~Dl~~~~v~~~~~~~~~~~~~~---~~e~SAk~~-  157 (219)
T PLN03071         82 YYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQ---YYEISAKSN-  157 (219)
T ss_pred             HcccccEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhhhhccCCHHHHHHHHhcCCE---EEEcCCCCC-
Confidence            4689999999999987643321 11111121   468999999999996543212222333333444   889999999 


Q ss_pred             CCCHHHHHHHHHHHhh
Q psy15351         87 CKGVQKILPTLQHISD  102 (352)
Q Consensus        87 ~~gi~~L~~~i~~~~~  102 (352)
                       .|+++++.+|.+.+.
T Consensus       158 -~~i~~~f~~l~~~~~  172 (219)
T PLN03071        158 -YNFEKPFLYLARKLA  172 (219)
T ss_pred             -CCHHHHHHHHHHHHH
Confidence             999999999876554

>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA

Probab=97.97  E-value=4.2e-05  Score=77.58  Aligned_cols=99  Identities=11%  Similarity=0.044  Sum_probs=68.6

Q ss_pred             HHHHHHHHhhccCEEEEEEcCCCCCCCcCHHHHHHHh-CCCCEEEEEEcccCCCccc---hHHHHHHHHhhcCC----CC
Q psy15351          4 GLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQ-NIRPMVLVLNKRDLINSKH---ESLIEEKVRKEQSH----IS   75 (352)
Q Consensus         4 ~~~~~~~~i~~aD~vl~VvDar~p~~~~~~~l~~~l~-~~k~~ilVlNK~Dl~~~~~---~~~~~~~~~~~~~~----~~   75 (352)
                      ....+...+..+|.+++|+|+..+.......+...+. .+.|.++|+||+|+.....   .++..+.+...+..    ..
T Consensus        77 F~~ev~~~l~~aD~alLVVDa~~G~~~qT~~~l~~a~~~~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~g~~~e~l~~  156 (594)
T TIGR01394        77 FGGEVERVLGMVDGVLLLVDASEGPMPQTRFVLKKALELGLKPIVVINKIDRPSARPDEVVDEVFDLFAELGADDEQLDF  156 (594)
T ss_pred             HHHHHHHHHHhCCEEEEEEeCCCCCcHHHHHHHHHHHHCCCCEEEEEECCCCCCcCHHHHHHHHHHHHHhhccccccccC
Confidence            3456778899999999999998765444444444333 6789999999999865421   34444444322211    11


Q ss_pred             cEEEeecCCCCCC----------CHHHHHHHHHHHhhhc
Q psy15351         76 EVIFTNCRNPNCK----------GVQKILPTLQHISDNM  104 (352)
Q Consensus        76 ~v~~iSa~~~~~~----------gi~~L~~~i~~~~~~~  104 (352)
                      +++++||+++  .          |+..|++.+.+.++..
T Consensus       157 pvl~~SA~~g--~~~~~~~~~~~gi~~Lld~Iv~~lP~P  193 (594)
T TIGR01394       157 PIVYASGRAG--WASLDLDDPSDNMAPLFDAIVRHVPAP  193 (594)
T ss_pred             cEEechhhcC--cccccCcccccCHHHHHHHHHHhCCCC
Confidence            4899999998  5          7999999998888753

This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.

>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases

Probab=97.96  E-value=3.5e-05  Score=65.34  Aligned_cols=86  Identities=16%  Similarity=0.167  Sum_probs=56.6

Q ss_pred             HhhccCEEEEEEcCCCCCCCcCH--HHHHHHh---CCCCEEEEEEcccCCCccc--------------hHHHHHHHHhhc
Q psy15351         11 HLKNVDIVIEVHDSRMPFTGRNH--LLQQSVQ---NIRPMVLVLNKRDLINSKH--------------ESLIEEKVRKEQ   71 (352)
Q Consensus        11 ~i~~aD~vl~VvDar~p~~~~~~--~l~~~l~---~~k~~ilVlNK~Dl~~~~~--------------~~~~~~~~~~~~   71 (352)
                      .+..+|++|+|.|..++-+..+-  .+...+.   .+.|+++|.||+|+.+...              ..+..++.++.+
T Consensus        66 ~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  145 (174)
T smart00174       66 SYPDTDVFLICFSVDSPASFENVKEKWYPEVKHFCPNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIG  145 (174)
T ss_pred             hcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcC
Confidence            56789999999999876332211  1222222   4789999999999975321              111122233334


Q ss_pred             CCCCcEEEeecCCCCCCCHHHHHHHHHHH
Q psy15351         72 SHISEVIFTNCRNPNCKGVQKILPTLQHI  100 (352)
Q Consensus        72 ~~~~~v~~iSa~~~~~~gi~~L~~~i~~~  100 (352)
                      ..  .++.+||+++  .|++++++.+.+.
T Consensus       146 ~~--~~~e~Sa~~~--~~v~~lf~~l~~~  170 (174)
T smart00174      146 AV--KYLECSALTQ--EGVREVFEEAIRA  170 (174)
T ss_pred             Cc--EEEEecCCCC--CCHHHHHHHHHHH
Confidence            32  4889999999  9999999887654

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.

>cd04125 RabA_like RabA-like subfamily

Probab=97.96  E-value=5e-05  Score=65.50  Aligned_cols=88  Identities=16%  Similarity=0.061  Sum_probs=59.2

Q ss_pred             HHHHhhccCEEEEEEcCCCCCCCcCHHHHHHH----h---CCCCEEEEEEcccCCCccch--HHHHHHHHhhcCCCCcEE
Q psy15351          8 IEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSV----Q---NIRPMVLVLNKRDLINSKHE--SLIEEKVRKEQSHISEVI   78 (352)
Q Consensus         8 ~~~~i~~aD~vl~VvDar~p~~~~~~~l~~~l----~---~~k~~ilVlNK~Dl~~~~~~--~~~~~~~~~~~~~~~~v~   78 (352)
                      ....+..+|++++|+|+.++.+.  ..+..++    .   ...|+++|.||+|+.+....  .....+.+..+.+   ++
T Consensus        66 ~~~~~~~~d~iilv~d~~~~~s~--~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~---~~  140 (188)
T cd04125          66 NNSYYRGAHGYLLVYDVTDQESF--ENLKFWINEINRYARENVIKVIVANKSDLVNNKVVDSNIAKSFCDSLNIP---FF  140 (188)
T ss_pred             HHHHccCCCEEEEEEECcCHHHH--HHHHHHHHHHHHhCCCCCeEEEEEECCCCcccccCCHHHHHHHHHHcCCe---EE
Confidence            34567899999999999875322  1222222    1   34789999999999854321  2222222333444   89


Q ss_pred             EeecCCCCCCCHHHHHHHHHHHhh
Q psy15351         79 FTNCRNPNCKGVQKILPTLQHISD  102 (352)
Q Consensus        79 ~iSa~~~~~~gi~~L~~~i~~~~~  102 (352)
                      .+||+++  .|+++++.++.+.+.
T Consensus       141 evSa~~~--~~i~~~f~~l~~~~~  162 (188)
T cd04125         141 ETSAKQS--INVEEAFILLVKLII  162 (188)
T ss_pred             EEeCCCC--CCHHHHHHHHHHHHH
Confidence            9999999  999999988876554

RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04109 Rab28 Rab28 subfamily

Probab=97.96  E-value=2.6e-05  Score=69.02  Aligned_cols=58  Identities=21%  Similarity=0.277  Sum_probs=35.8

Q ss_pred             eEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeee-eEEecCC--CcEEEEeCCCCC
Q psy15351        169 TTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMS-QVKISEK--PLIYILDTPGIS  232 (352)
Q Consensus       169 ~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~-~~~~~~~--~~~~l~DtPGi~  232 (352)
                      ++|+++|.+|||||||+|++.+...      .....|..+.+... .+.+.++  -.+.++||||-.
T Consensus         1 ~Ki~ivG~~~vGKSsLi~~l~~~~~------~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~   61 (215)
T cd04109           1 FKIVVLGDGAVGKTSLCRRFAKEGF------GKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQS   61 (215)
T ss_pred             CEEEEECcCCCCHHHHHHHHhcCCC------CCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcH
Confidence            4799999999999999999986321      11222333323221 2223222  257899999953

First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs

>cd00876 Ras Ras family

Probab=97.95  E-value=5.8e-05  Score=62.65  Aligned_cols=87  Identities=18%  Similarity=0.120  Sum_probs=58.8

Q ss_pred             HHHHhhccCEEEEEEcCCCCCCCcC-HHH-HHHHh----CCCCEEEEEEcccCCCccc--hHHHHHHHHhhcCCCCcEEE
Q psy15351          8 IEKHLKNVDIVIEVHDSRMPFTGRN-HLL-QQSVQ----NIRPMVLVLNKRDLINSKH--ESLIEEKVRKEQSHISEVIF   79 (352)
Q Consensus         8 ~~~~i~~aD~vl~VvDar~p~~~~~-~~l-~~~l~----~~k~~ilVlNK~Dl~~~~~--~~~~~~~~~~~~~~~~~v~~   79 (352)
                      ....+..+|++++|+|..++.+..+ ..+ ..+..    ...|+++|+||+|+.+...  .+.......+.+.+   ++.
T Consensus        64 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~---~~~  140 (160)
T cd00876          64 RDLYIRQGDGFILVYSITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVSKEEGKALAKEWGCP---FIE  140 (160)
T ss_pred             HHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccceecHHHHHHHHHHcCCc---EEE
Confidence            3456789999999999876532211 111 12221    3689999999999986332  23333444444444   899


Q ss_pred             eecCCCCCCCHHHHHHHHHH
Q psy15351         80 TNCRNPNCKGVQKILPTLQH   99 (352)
Q Consensus        80 iSa~~~~~~gi~~L~~~i~~   99 (352)
                      +||+++  .|+++++++|.+
T Consensus       141 ~S~~~~--~~i~~l~~~l~~  158 (160)
T cd00876         141 TSAKDN--INIDEVFKLLVR  158 (160)
T ss_pred             eccCCC--CCHHHHHHHHHh
Confidence            999999  999999998864

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m

>cd04144 Ras2 Ras2 subfamily

Probab=97.95  E-value=1.2e-05  Score=69.55  Aligned_cols=21  Identities=29%  Similarity=0.412  Sum_probs=19.5

Q ss_pred             EEEEeCCCCCChHHHHHHHhC
Q psy15351        170 TVMVVGVPNVGKSSIINALRS  190 (352)
Q Consensus       170 ~v~i~G~pnvGKStliN~l~~  190 (352)
                      +|+++|.+|||||||+|++..
T Consensus         1 ki~ivG~~~vGKTsli~~l~~   21 (190)
T cd04144           1 KLVVLGDGGVGKTALTIQLCL   21 (190)
T ss_pred             CEEEECCCCCCHHHHHHHHHh
Confidence            489999999999999999985

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>TIGR00437 feoB ferrous iron transporter FeoB

Probab=97.95  E-value=4e-05  Score=77.80  Aligned_cols=83  Identities=25%  Similarity=0.295  Sum_probs=57.6

Q ss_pred             hhccCEEEEEEcCCCCCCCcCHHH-HHHHhCCCCEEEEEEcccCCCccchHHHHHHHHh-hcCCCCcEEEeecCCCCCCC
Q psy15351         12 LKNVDIVIEVHDSRMPFTGRNHLL-QQSVQNIRPMVLVLNKRDLINSKHESLIEEKVRK-EQSHISEVIFTNCRNPNCKG   89 (352)
Q Consensus        12 i~~aD~vl~VvDar~p~~~~~~~l-~~~l~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~-~~~~~~~v~~iSa~~~~~~g   89 (352)
                      .+.+|+++.|+|+++.  .++..+ .+..+.++|+++|+||+|+..+.....-.+.+.+ .+.+   ++.+||+++  +|
T Consensus        70 ~~~aDvvI~VvDat~l--er~l~l~~ql~~~~~PiIIVlNK~Dl~~~~~i~~d~~~L~~~lg~p---vv~tSA~tg--~G  142 (591)
T TIGR00437        70 NEKPDLVVNVVDASNL--ERNLYLTLQLLELGIPMILALNLVDEAEKKGIRIDEEKLEERLGVP---VVPTSATEG--RG  142 (591)
T ss_pred             hcCCCEEEEEecCCcc--hhhHHHHHHHHhcCCCEEEEEehhHHHHhCCChhhHHHHHHHcCCC---EEEEECCCC--CC
Confidence            3579999999999863  222222 2333368999999999999754432222233333 3554   999999999  99


Q ss_pred             HHHHHHHHHHHh
Q psy15351         90 VQKILPTLQHIS  101 (352)
Q Consensus        90 i~~L~~~i~~~~  101 (352)
                      ++++++.+.+..
T Consensus       143 i~eL~~~i~~~~  154 (591)
T TIGR00437       143 IERLKDAIRKAI  154 (591)
T ss_pred             HHHHHHHHHHHh
Confidence            999999987654

FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.

>cd04127 Rab27A Rab27a subfamily

Probab=97.95  E-value=2.5e-05  Score=66.69  Aligned_cols=24  Identities=21%  Similarity=0.364  Sum_probs=21.9

Q ss_pred             ceEEEEeCCCCCChHHHHHHHhCC
Q psy15351        168 NTTVMVVGVPNVGKSSIINALRSS  191 (352)
Q Consensus       168 ~~~v~i~G~pnvGKStliN~l~~~  191 (352)
                      .++|+++|.+|||||||+|++.+.
T Consensus         4 ~~ki~ivG~~~vGKTsli~~~~~~   27 (180)
T cd04127           4 LIKFLALGDSGVGKTSFLYQYTDN   27 (180)
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcC
Confidence            478999999999999999999863

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated

>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2

Probab=97.95  E-value=6.4e-05  Score=76.02  Aligned_cols=91  Identities=19%  Similarity=0.208  Sum_probs=60.6

Q ss_pred             HHHhhccCEEEEEEcCCCCCCCcCHHHHHHHh-CCCCEEEEEEcccCCCccc--------------h----HHH------
Q psy15351          9 EKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQ-NIRPMVLVLNKRDLINSKH--------------E----SLI------   63 (352)
Q Consensus         9 ~~~i~~aD~vl~VvDar~p~~~~~~~l~~~l~-~~k~~ilVlNK~Dl~~~~~--------------~----~~~------   63 (352)
                      ......+|++++|+|+++.......+...+++ .+.|+++++||+|+.+...              .    ..+      
T Consensus        87 ~~~~~~aD~~IlVvD~~~g~~~qt~e~i~~l~~~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak~~~~v~~~~~~~~~~  166 (590)
T TIGR00491        87 KRGGALADLAILIVDINEGFKPQTQEALNILRMYKTPFVVAANKIDRIPGWRSHEGRPFMESFSKQEIQVQQNLDTKVYN  166 (590)
T ss_pred             HHHHhhCCEEEEEEECCcCCCHhHHHHHHHHHHcCCCEEEEEECCCccchhhhccCchHHHHHHhhhHHHHHHHHHHHHH
Confidence            34668999999999999866554444444444 6789999999999975210              0    000      


Q ss_pred             -HHHHHhhcCC------------CCcEEEeecCCCCCCCHHHHHHHHHHHh
Q psy15351         64 -EEKVRKEQSH------------ISEVIFTNCRNPNCKGVQKILPTLQHIS  101 (352)
Q Consensus        64 -~~~~~~~~~~------------~~~v~~iSa~~~~~~gi~~L~~~i~~~~  101 (352)
                       ...+.+.++.            ..+++++||+++  +|+++|+.++..+.
T Consensus       167 lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tG--eGideLl~~l~~l~  215 (590)
T TIGR00491       167 LVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITG--EGIPELLTMLAGLA  215 (590)
T ss_pred             HHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCC--CChhHHHHHHHHHH
Confidence             1112222221            126899999999  99999999886543

This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.

>cd04111 Rab39 Rab39 subfamily

Probab=97.95  E-value=5e-05  Score=67.06  Aligned_cols=90  Identities=18%  Similarity=0.115  Sum_probs=58.9

Q ss_pred             HHHhhccCEEEEEEcCCCCCCCcC--HHHHHHHh----CCCCEEEEEEcccCCCccc--hHHHHHHHHhhcCCCCcEEEe
Q psy15351          9 EKHLKNVDIVIEVHDSRMPFTGRN--HLLQQSVQ----NIRPMVLVLNKRDLINSKH--ESLIEEKVRKEQSHISEVIFT   80 (352)
Q Consensus         9 ~~~i~~aD~vl~VvDar~p~~~~~--~~l~~~l~----~~k~~ilVlNK~Dl~~~~~--~~~~~~~~~~~~~~~~~v~~i   80 (352)
                      ...+.++|++++|.|..++-+..+  ..+.++.+    ...|+++|.||+|+.+...  .++..++.+..+..   ++.+
T Consensus        70 ~~~~~~~d~iilv~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~---~~e~  146 (211)
T cd04111          70 RSYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVTREEAEKLAKDLGMK---YIET  146 (211)
T ss_pred             HHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccccccccCHHHHHHHHHHhCCE---EEEE
Confidence            356789999999999987633221  11112211    2356788999999976432  22222333334544   8999


Q ss_pred             ecCCCCCCCHHHHHHHHHHHhhh
Q psy15351         81 NCRNPNCKGVQKILPTLQHISDN  103 (352)
Q Consensus        81 Sa~~~~~~gi~~L~~~i~~~~~~  103 (352)
                      ||+++  .|+++++++|.+.+..
T Consensus       147 Sak~g--~~v~e~f~~l~~~~~~  167 (211)
T cd04111         147 SARTG--DNVEEAFELLTQEIYE  167 (211)
T ss_pred             eCCCC--CCHHHHHHHHHHHHHH
Confidence            99999  9999999998875543

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>PRK05306 infB translation initiation factor IF-2; Validated

Probab=97.95  E-value=1.6e-05  Score=82.54  Aligned_cols=62  Identities=27%  Similarity=0.421  Sum_probs=46.0

Q ss_pred             CcceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCCcEEEEeCCCCCC
Q psy15351        166 VYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISL  233 (352)
Q Consensus       166 ~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~~  233 (352)
                      .++..|+++|.+|+|||||+++|++.      ....+..+|.|.+.........+..+.|+||||...
T Consensus       288 ~R~pvV~ImGhvd~GKTSLl~~Lr~~------~v~~~e~~GIT~~iga~~v~~~~~~ItfiDTPGhe~  349 (787)
T PRK05306        288 PRPPVVTIMGHVDHGKTSLLDAIRKT------NVAAGEAGGITQHIGAYQVETNGGKITFLDTPGHEA  349 (787)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHhC------CccccccCceeeeccEEEEEECCEEEEEEECCCCcc
Confidence            57789999999999999999999852      233455678887764322223345799999999754

>cd00882 Ras_like_GTPase Ras-like GTPase superfamily

Probab=97.95  E-value=4.7e-05  Score=61.68  Aligned_cols=85  Identities=21%  Similarity=0.125  Sum_probs=58.0

Q ss_pred             HHHhhccCEEEEEEcCCCCCCCcCHHHH-----HHHh-CCCCEEEEEEcccCCCccchHHH--HHHHHh-hcCCCCcEEE
Q psy15351          9 EKHLKNVDIVIEVHDSRMPFTGRNHLLQ-----QSVQ-NIRPMVLVLNKRDLINSKHESLI--EEKVRK-EQSHISEVIF   79 (352)
Q Consensus         9 ~~~i~~aD~vl~VvDar~p~~~~~~~l~-----~~l~-~~k~~ilVlNK~Dl~~~~~~~~~--~~~~~~-~~~~~~~v~~   79 (352)
                      ...+..+|.+++|+|+..+.........     .... .++|+++|+||+|+.+.......  ...... ...   +++.
T Consensus        63 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~~~~~~~~~~~~~---~~~~  139 (157)
T cd00882          63 RLYYRGADGIILVYDVTDRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVSEEELAEQLAKELGV---PYFE  139 (157)
T ss_pred             HHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchHHHHHHHHHHhhcCC---cEEE
Confidence            4567899999999999876443322211     1111 57899999999999876543332  112212 233   5999


Q ss_pred             eecCCCCCCCHHHHHHHHH
Q psy15351         80 TNCRNPNCKGVQKILPTLQ   98 (352)
Q Consensus        80 iSa~~~~~~gi~~L~~~i~   98 (352)
                      +|+.++  .|+++++++|.
T Consensus       140 ~s~~~~--~~i~~~~~~l~  156 (157)
T cd00882         140 TSAKTG--ENVEELFEELA  156 (157)
T ss_pred             EecCCC--CChHHHHHHHh
Confidence            999999  99999998874

The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb

>TIGR00231 small_GTP small GTP-binding protein domain

Probab=97.94  E-value=1.4e-05  Score=65.63  Aligned_cols=53  Identities=21%  Similarity=0.251  Sum_probs=39.3

Q ss_pred             CCCEEEEEEcccCCCccchHHHHHHHHhhcCCCCcEEEeecCCCCCCCHHHHHHHHH
Q psy15351         42 IRPMVLVLNKRDLINSKHESLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQ   98 (352)
Q Consensus        42 ~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~v~~iSa~~~~~~gi~~L~~~i~   98 (352)
                      +.|+++|+||+|+............+...+..  +++.+||.++  .|+.+++++|.
T Consensus       108 ~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~sa~~~--~gv~~~~~~l~  160 (161)
T TIGR00231       108 NVPIILVGNKIDLRDAKLKTHVAFLFAKLNGE--PIIPLSAETG--KNIDSAFKIVE  160 (161)
T ss_pred             CCcEEEEEEcccCCcchhhHHHHHHHhhccCC--ceEEeecCCC--CCHHHHHHHhh
Confidence            78999999999998754333444444333332  5899999999  99999988764

This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.

>KOG2486|consensus

Probab=97.94  E-value=1.7e-05  Score=71.05  Aligned_cols=63  Identities=25%  Similarity=0.347  Sum_probs=47.5

Q ss_pred             CcceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecC-CCCCceeEeeeeEEecCCCcEEEEeCCCCCCCC
Q psy15351        166 VYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVG-PKAGVTRSVMSQVKISEKPLIYILDTPGISLPR  235 (352)
Q Consensus       166 ~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~-~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~~~~  235 (352)
                      ...+.++++|.+|||||+|||.+.+.    .....++ +.+|.|+..+ .+.+  +.+++++|.||+....
T Consensus       134 ~~~pe~~~~g~SNVGKSSLln~~~r~----k~~~~t~k~K~g~Tq~in-~f~v--~~~~~~vDlPG~~~a~  197 (320)
T KOG2486|consen  134 DKRPELAFYGRSNVGKSSLLNDLVRV----KNIADTSKSKNGKTQAIN-HFHV--GKSWYEVDLPGYGRAG  197 (320)
T ss_pred             CCCceeeeecCCcccHHHHHhhhhhh----hhhhhhcCCCCccceeee-eeec--cceEEEEecCCccccc
Confidence            45689999999999999999999974    2233333 4999999865 3443  3479999999976643

>cd04176 Rap2 Rap2 subgroup

Probab=97.94  E-value=1.9e-05  Score=66.28  Aligned_cols=22  Identities=36%  Similarity=0.475  Sum_probs=20.6

Q ss_pred             eEEEEeCCCCCChHHHHHHHhC
Q psy15351        169 TTVMVVGVPNVGKSSIINALRS  190 (352)
Q Consensus       169 ~~v~i~G~pnvGKStliN~l~~  190 (352)
                      ++|+++|.||||||||++++..
T Consensus         2 ~ki~i~G~~~vGKTsl~~~~~~   23 (163)
T cd04176           2 YKVVVLGSGGVGKSALTVQFVS   23 (163)
T ss_pred             eEEEEECCCCCCHHHHHHHHHc
Confidence            6899999999999999999986

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl

>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily

Probab=97.94  E-value=3.2e-05  Score=67.63  Aligned_cols=22  Identities=41%  Similarity=0.549  Sum_probs=20.5

Q ss_pred             eEEEEeCCCCCChHHHHHHHhC
Q psy15351        169 TTVMVVGVPNVGKSSIINALRS  190 (352)
Q Consensus       169 ~~v~i~G~pnvGKStliN~l~~  190 (352)
                      ++|+++|.+|||||||+|++.+
T Consensus         1 ~KivivG~~~vGKTsli~~l~~   22 (201)
T cd04107           1 LKVLVIGDLGVGKTSIIKRYVH   22 (201)
T ss_pred             CEEEEECCCCCCHHHHHHHHHc
Confidence            4799999999999999999986

Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd01882 BMS1 Bms1

Probab=97.93  E-value=5e-05  Score=67.77  Aligned_cols=80  Identities=16%  Similarity=0.169  Sum_probs=55.1

Q ss_pred             HHHHHHhhccCEEEEEEcCCCCCCCcCHHHHHHHh-CCCCEE-EEEEcccCCCccc-hHHHHHHHHh----hcCCCCcEE
Q psy15351          6 KDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQ-NIRPMV-LVLNKRDLINSKH-ESLIEEKVRK----EQSHISEVI   78 (352)
Q Consensus         6 ~~~~~~i~~aD~vl~VvDar~p~~~~~~~l~~~l~-~~k~~i-lVlNK~Dl~~~~~-~~~~~~~~~~----~~~~~~~v~   78 (352)
                      ..+...++.+|++++|+|++.++...+..+..++. .+.|.+ +|+||+|++++.. .....+.+++    ......+++
T Consensus        95 ~~~l~~ak~aDvVllviDa~~~~~~~~~~i~~~l~~~g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~~~~~~~~ki~  174 (225)
T cd01882          95 NAMIDIAKVADLVLLLIDASFGFEMETFEFLNILQVHGFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWTEVYQGAKLF  174 (225)
T ss_pred             HHHHHHHHhcCEEEEEEecCcCCCHHHHHHHHHHHHcCCCeEEEEEeccccCCcHHHHHHHHHHHHHHHHHhhCCCCcEE
Confidence            45667789999999999999877666666666664 567854 4999999985432 2333333322    223445899


Q ss_pred             EeecCCC
Q psy15351         79 FTNCRNP   85 (352)
Q Consensus        79 ~iSa~~~   85 (352)
                      ++||+++
T Consensus       175 ~iSa~~~  181 (225)
T cd01882         175 YLSGIVH  181 (225)
T ss_pred             EEeeccC
Confidence            9999987

Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.

>cd01873 RhoBTB RhoBTB subfamily

Probab=97.93  E-value=4.4e-05  Score=66.59  Aligned_cols=84  Identities=17%  Similarity=0.121  Sum_probs=57.4

Q ss_pred             HhhccCEEEEEEcCCCCCCCcCH--HHHHHHh---CCCCEEEEEEcccCCCc-------------------c--chHHHH
Q psy15351         11 HLKNVDIVIEVHDSRMPFTGRNH--LLQQSVQ---NIRPMVLVLNKRDLINS-------------------K--HESLIE   64 (352)
Q Consensus        11 ~i~~aD~vl~VvDar~p~~~~~~--~l~~~l~---~~k~~ilVlNK~Dl~~~-------------------~--~~~~~~   64 (352)
                      ....+|++++|.|..++.+..+.  .+...++   .+.|+++|.||+||...                   .  ..++..
T Consensus        84 ~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V~~~e~~  163 (195)
T cd01873          84 AYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCPRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADILPPETGR  163 (195)
T ss_pred             cCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCCCCCEEEEEEchhccccccchhhhcccccccccccCCccCHHHHH
Confidence            56899999999999876543321  1222222   46799999999999641                   1  123333


Q ss_pred             HHHHhhcCCCCcEEEeecCCCCCCCHHHHHHHHHH
Q psy15351         65 EKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQH   99 (352)
Q Consensus        65 ~~~~~~~~~~~~v~~iSa~~~~~~gi~~L~~~i~~   99 (352)
                      ++.++.+..   ++.+||+++  .|++++++.+.+
T Consensus       164 ~~a~~~~~~---~~E~SAkt~--~~V~e~F~~~~~  193 (195)
T cd01873         164 AVAKELGIP---YYETSVVTQ--FGVKDVFDNAIR  193 (195)
T ss_pred             HHHHHhCCE---EEEcCCCCC--CCHHHHHHHHHH
Confidence            444445554   889999999  999999887754

Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.

>cd04116 Rab9 Rab9 subfamily

Probab=97.93  E-value=8.9e-05  Score=62.60  Aligned_cols=86  Identities=12%  Similarity=0.100  Sum_probs=57.1

Q ss_pred             HHhhccCEEEEEEcCCCCCCCcC--HHHHHHHh-------CCCCEEEEEEcccCCCccc-hHHHHHHHHhhcCCCCcEEE
Q psy15351         10 KHLKNVDIVIEVHDSRMPFTGRN--HLLQQSVQ-------NIRPMVLVLNKRDLINSKH-ESLIEEKVRKEQSHISEVIF   79 (352)
Q Consensus        10 ~~i~~aD~vl~VvDar~p~~~~~--~~l~~~l~-------~~k~~ilVlNK~Dl~~~~~-~~~~~~~~~~~~~~~~~v~~   79 (352)
                      ..+..+|++++|.|..++.+...  ..+.+++.       .+.|+++|.||+|+..... .++..++.++.+..  +++.
T Consensus        73 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~--~~~e  150 (170)
T cd04116          73 PFYRGSDCCLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPERQVSTEEAQAWCRENGDY--PYFE  150 (170)
T ss_pred             HHhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECccccccccCHHHHHHHHHHCCCC--eEEE
Confidence            46788999999999876532221  11222221       2469999999999974332 23444444444432  5889


Q ss_pred             eecCCCCCCCHHHHHHHHHH
Q psy15351         80 TNCRNPNCKGVQKILPTLQH   99 (352)
Q Consensus        80 iSa~~~~~~gi~~L~~~i~~   99 (352)
                      +||+++  .|+.++++.+.+
T Consensus       151 ~Sa~~~--~~v~~~~~~~~~  168 (170)
T cd04116         151 TSAKDA--TNVAAAFEEAVR  168 (170)
T ss_pred             EECCCC--CCHHHHHHHHHh
Confidence            999999  999999888754

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX

>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily

Probab=97.93  E-value=4.2e-05  Score=64.31  Aligned_cols=89  Identities=18%  Similarity=0.159  Sum_probs=58.1

Q ss_pred             HHHHhhccCEEEEEEcCCCCCCCcC-HHHHHHHh------CCCCEEEEEEcccCCCccc--hHHHHHHHHhhcCCCCcEE
Q psy15351          8 IEKHLKNVDIVIEVHDSRMPFTGRN-HLLQQSVQ------NIRPMVLVLNKRDLINSKH--ESLIEEKVRKEQSHISEVI   78 (352)
Q Consensus         8 ~~~~i~~aD~vl~VvDar~p~~~~~-~~l~~~l~------~~k~~ilVlNK~Dl~~~~~--~~~~~~~~~~~~~~~~~v~   78 (352)
                      ....+..+|++++|+|+.++.+... ..+...+.      .+.|+++|.||+|+.....  ..+..++.+..+.   +++
T Consensus        65 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~---~~~  141 (165)
T cd04146          65 LERSIRWADGFVLVYSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVSTEEGEKLASELGC---LFF  141 (165)
T ss_pred             HHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccCHHHHHHHHHHcCC---EEE
Confidence            4567789999999999987633221 11122221      2689999999999864432  2222333333344   488


Q ss_pred             EeecCCCCCC-CHHHHHHHHHHHh
Q psy15351         79 FTNCRNPNCK-GVQKILPTLQHIS  101 (352)
Q Consensus        79 ~iSa~~~~~~-gi~~L~~~i~~~~  101 (352)
                      .+||+++  . |+++++..+.+.+
T Consensus       142 e~Sa~~~--~~~v~~~f~~l~~~~  163 (165)
T cd04146         142 EVSAAED--YDGVHSVFHELCREV  163 (165)
T ss_pred             EeCCCCC--chhHHHHHHHHHHHH
Confidence            9999998  6 8999998886543

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu

>cd04133 Rop_like Rop subfamily

Probab=97.93  E-value=5.3e-05  Score=64.92  Aligned_cols=88  Identities=16%  Similarity=0.137  Sum_probs=59.1

Q ss_pred             HHhhccCEEEEEEcCCCCCCCcCH--HHHHHHh---CCCCEEEEEEcccCCCcc------------chHHHHHHHHhhcC
Q psy15351         10 KHLKNVDIVIEVHDSRMPFTGRNH--LLQQSVQ---NIRPMVLVLNKRDLINSK------------HESLIEEKVRKEQS   72 (352)
Q Consensus        10 ~~i~~aD~vl~VvDar~p~~~~~~--~l~~~l~---~~k~~ilVlNK~Dl~~~~------------~~~~~~~~~~~~~~   72 (352)
                      ..+..+|.+|+|.|..++.+..+-  .+...++   .+.|+++|.||+||.+..            ..++..++.++.+.
T Consensus        68 ~~~~~a~~~ilvyd~~~~~Sf~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~  147 (176)
T cd04133          68 LSYRGADVFVLAFSLISRASYENVLKKWVPELRHYAPNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGA  147 (176)
T ss_pred             hhcCCCcEEEEEEEcCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCC
Confidence            367899999999999876554331  1222222   467999999999996532            12222333333343


Q ss_pred             CCCcEEEeecCCCCCCCHHHHHHHHHHHh
Q psy15351         73 HISEVIFTNCRNPNCKGVQKILPTLQHIS  101 (352)
Q Consensus        73 ~~~~v~~iSa~~~~~~gi~~L~~~i~~~~  101 (352)
                      .  .++.+||+++  .|++++++.+.+.+
T Consensus       148 ~--~~~E~SAk~~--~nV~~~F~~~~~~~  172 (176)
T cd04133         148 A--AYIECSSKTQ--QNVKAVFDAAIKVV  172 (176)
T ss_pred             C--EEEECCCCcc--cCHHHHHHHHHHHH
Confidence            2  3789999999  99999999887654

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,

>cd04159 Arl10_like Arl10-like subfamily

Probab=97.93  E-value=1.9e-05  Score=65.20  Aligned_cols=54  Identities=19%  Similarity=0.340  Sum_probs=33.6

Q ss_pred             EEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCCcEEEEeCCCCC
Q psy15351        171 VMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGIS  232 (352)
Q Consensus       171 v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~  232 (352)
                      |+++|.+|||||||+|+|.+...      .....|.+..... .+. .+...+.++||||..
T Consensus         2 i~i~G~~~~GKssl~~~l~~~~~------~~~~~~t~~~~~~-~~~-~~~~~~~~~D~~g~~   55 (159)
T cd04159           2 ITLVGLQNSGKTTLVNVIAGGQF------SEDTIPTVGFNMR-KVT-KGNVTLKVWDLGGQP   55 (159)
T ss_pred             EEEEcCCCCCHHHHHHHHccCCC------CcCccCCCCcceE-EEE-ECCEEEEEEECCCCH
Confidence            78999999999999999997321      1111222222111 111 223458899999964

Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.

>PLN03108 Rab family protein; Provisional

Probab=97.92  E-value=8e-05  Score=65.65  Aligned_cols=89  Identities=13%  Similarity=0.064  Sum_probs=59.3

Q ss_pred             HHHHhhccCEEEEEEcCCCCCCCcC--HHHHHHHh---CCCCEEEEEEcccCCCccc--hHHHHHHHHhhcCCCCcEEEe
Q psy15351          8 IEKHLKNVDIVIEVHDSRMPFTGRN--HLLQQSVQ---NIRPMVLVLNKRDLINSKH--ESLIEEKVRKEQSHISEVIFT   80 (352)
Q Consensus         8 ~~~~i~~aD~vl~VvDar~p~~~~~--~~l~~~l~---~~k~~ilVlNK~Dl~~~~~--~~~~~~~~~~~~~~~~~v~~i   80 (352)
                      ....+..+|.+++|+|+.++.+...  ..+.....   ...|+++|.||+|+.....  ..+..++.++.+..   ++.+
T Consensus        72 ~~~~~~~ad~~vlv~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~---~~e~  148 (210)
T PLN03108         72 TRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLI---FMEA  148 (210)
T ss_pred             HHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccCCCHHHHHHHHHHcCCE---EEEE
Confidence            3456778999999999987543222  11212221   3679999999999975432  23333444444554   8999


Q ss_pred             ecCCCCCCCHHHHHHHHHHHh
Q psy15351         81 NCRNPNCKGVQKILPTLQHIS  101 (352)
Q Consensus        81 Sa~~~~~~gi~~L~~~i~~~~  101 (352)
                      ||+++  .|+++++.++.+.+
T Consensus       149 Sa~~~--~~v~e~f~~l~~~~  167 (210)
T PLN03108        149 SAKTA--QNVEEAFIKTAAKI  167 (210)
T ss_pred             eCCCC--CCHHHHHHHHHHHH
Confidence            99999  99999887775443

>KOG0462|consensus

Probab=97.92  E-value=4.1e-05  Score=74.41  Aligned_cols=94  Identities=17%  Similarity=0.191  Sum_probs=67.0

Q ss_pred             HHHHhhccCEEEEEEcCCCCCCCcCH-HHHHHHhCCCCEEEEEEcccCCCccchHHHHHHHHh-hcCCCCcEEEeecCCC
Q psy15351          8 IEKHLKNVDIVIEVHDSRMPFTGRNH-LLQQSVQNIRPMVLVLNKRDLINSKHESLIEEKVRK-EQSHISEVIFTNCRNP   85 (352)
Q Consensus         8 ~~~~i~~aD~vl~VvDar~p~~~~~~-~l~~~l~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~-~~~~~~~v~~iSa~~~   85 (352)
                      +.+.+..||-+|+||||..+....-- .+...++.+-.+|.|+||+|+...+. +.....+.+ .+.+..+++.+||++|
T Consensus       142 VsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe~~L~iIpVlNKIDlp~adp-e~V~~q~~~lF~~~~~~~i~vSAK~G  220 (650)
T KOG0462|consen  142 VSRSLAACDGALLVVDASQGVQAQTVANFYLAFEAGLAIIPVLNKIDLPSADP-ERVENQLFELFDIPPAEVIYVSAKTG  220 (650)
T ss_pred             ehehhhhcCceEEEEEcCcCchHHHHHHHHHHHHcCCeEEEeeeccCCCCCCH-HHHHHHHHHHhcCCccceEEEEeccC
Confidence            45678899999999999977654322 22222336777899999999976553 233333322 2444457999999999


Q ss_pred             CCCCHHHHHHHHHHHhhhc
Q psy15351         86 NCKGVQKILPTLQHISDNM  104 (352)
Q Consensus        86 ~~~gi~~L~~~i~~~~~~~  104 (352)
                        .|+++++++|.+.+|..
T Consensus       221 --~~v~~lL~AII~rVPpP  237 (650)
T KOG0462|consen  221 --LNVEELLEAIIRRVPPP  237 (650)
T ss_pred             --ccHHHHHHHHHhhCCCC
Confidence              99999999999887754

>cd01871 Rac1_like Rac1-like subfamily

Probab=97.92  E-value=4.9e-05  Score=64.89  Aligned_cols=86  Identities=15%  Similarity=0.127  Sum_probs=55.9

Q ss_pred             HHhhccCEEEEEEcCCCCCCCcCH--HHHHHHh---CCCCEEEEEEcccCCCccc--------------hHHHHHHHHhh
Q psy15351         10 KHLKNVDIVIEVHDSRMPFTGRNH--LLQQSVQ---NIRPMVLVLNKRDLINSKH--------------ESLIEEKVRKE   70 (352)
Q Consensus        10 ~~i~~aD~vl~VvDar~p~~~~~~--~l~~~l~---~~k~~ilVlNK~Dl~~~~~--------------~~~~~~~~~~~   70 (352)
                      ..+..+|++|+|.|..++.+..+-  .+...+.   .+.|+++|.||+||.+...              ..+..++.++.
T Consensus        68 ~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  147 (174)
T cd01871          68 LSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEI  147 (174)
T ss_pred             hhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHc
Confidence            357889999999999876433221  1222222   4679999999999964321              11112222223


Q ss_pred             cCCCCcEEEeecCCCCCCCHHHHHHHHHH
Q psy15351         71 QSHISEVIFTNCRNPNCKGVQKILPTLQH   99 (352)
Q Consensus        71 ~~~~~~v~~iSa~~~~~~gi~~L~~~i~~   99 (352)
                      +.  .+++.+||+++  .|++++++.+.+
T Consensus       148 ~~--~~~~e~Sa~~~--~~i~~~f~~l~~  172 (174)
T cd01871         148 GA--VKYLECSALTQ--KGLKTVFDEAIR  172 (174)
T ss_pred             CC--cEEEEeccccc--CCHHHHHHHHHH
Confidence            32  14789999999  999999987754

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti

>PRK00049 elongation factor Tu; Reviewed

Probab=97.91  E-value=1.7e-05  Score=76.91  Aligned_cols=67  Identities=24%  Similarity=0.281  Sum_probs=45.9

Q ss_pred             CcceEEEEeCCCCCChHHHHHHHhCCCCCC-CCce---------ecCCCCCceeEeeeeEEecCCCcEEEEeCCCCC
Q psy15351        166 VYNTTVMVVGVPNVGKSSIINALRSSHMKK-GKAV---------PVGPKAGVTRSVMSQVKISEKPLIYILDTPGIS  232 (352)
Q Consensus       166 ~~~~~v~i~G~pnvGKStliN~l~~~~~~~-~~~~---------~~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~  232 (352)
                      .+.++|+++|.+++|||||+++|++..... +...         .-...+|+|.+.........+.++.|+||||..
T Consensus        10 ~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~   86 (396)
T PRK00049         10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHA   86 (396)
T ss_pred             CCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHH
Confidence            567999999999999999999998621100 0111         112268999987543333345579999999974

>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=97.91  E-value=7e-05  Score=72.98  Aligned_cols=94  Identities=12%  Similarity=0.135  Sum_probs=67.0

Q ss_pred             HHHHHHH-HhhccCEEEEEEcCCCCCCCcCHHHHHHHh-CCCCEEEEEEcccCCCccchHHHHHHHHhhcCCC------C
Q psy15351          4 GLKDIEK-HLKNVDIVIEVHDSRMPFTGRNHLLQQSVQ-NIRPMVLVLNKRDLINSKHESLIEEKVRKEQSHI------S   75 (352)
Q Consensus         4 ~~~~~~~-~i~~aD~vl~VvDar~p~~~~~~~l~~~l~-~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~------~   75 (352)
                      |+-.|+. -.+-+|++++|+|+.+....+-.+-...++ .+.|+++.+||+|..+... ......+.+.|+..      .
T Consensus        67 AFt~mRaRGa~vtDIaILVVa~dDGv~pQTiEAI~hak~a~vP~iVAiNKiDk~~~np-~~v~~el~~~gl~~E~~gg~v  145 (509)
T COG0532          67 AFTAMRARGASVTDIAILVVAADDGVMPQTIEAINHAKAAGVPIVVAINKIDKPEANP-DKVKQELQEYGLVPEEWGGDV  145 (509)
T ss_pred             HHHHHHhcCCccccEEEEEEEccCCcchhHHHHHHHHHHCCCCEEEEEecccCCCCCH-HHHHHHHHHcCCCHhhcCCce
Confidence            3444442 457789999999999988776655555555 7899999999999985443 23333343444321      2


Q ss_pred             cEEEeecCCCCCCCHHHHHHHHHHH
Q psy15351         76 EVIFTNCRNPNCKGVQKILPTLQHI  100 (352)
Q Consensus        76 ~v~~iSa~~~~~~gi~~L~~~i~~~  100 (352)
                      .++++||+++  +|+.+|+..+.-.
T Consensus       146 ~~VpvSA~tg--~Gi~eLL~~ill~  168 (509)
T COG0532         146 IFVPVSAKTG--EGIDELLELILLL  168 (509)
T ss_pred             EEEEeeccCC--CCHHHHHHHHHHH
Confidence            4788999999  9999999887643

>TIGR00487 IF-2 translation initiation factor IF-2

Probab=97.91  E-value=6.6e-05  Score=76.00  Aligned_cols=88  Identities=13%  Similarity=0.131  Sum_probs=60.2

Q ss_pred             HHHhhccCEEEEEEcCCCCCCCcCHHHHHHHh-CCCCEEEEEEcccCCCccchHHHHHHHHhhcCC------CCcEEEee
Q psy15351          9 EKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQ-NIRPMVLVLNKRDLINSKHESLIEEKVRKEQSH------ISEVIFTN   81 (352)
Q Consensus         9 ~~~i~~aD~vl~VvDar~p~~~~~~~l~~~l~-~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~------~~~v~~iS   81 (352)
                      .+.+..+|++++|+|+.++......+.....+ .+.|+++++||+|+.+.. .+...+.+.+.+..      ..+++.+|
T Consensus       153 ~rga~~aDiaILVVda~dgv~~qT~e~i~~~~~~~vPiIVviNKiDl~~~~-~e~v~~~L~~~g~~~~~~~~~~~~v~iS  231 (587)
T TIGR00487       153 ARGAKVTDIVVLVVAADDGVMPQTIEAISHAKAANVPIIVAINKIDKPEAN-PDRVKQELSEYGLVPEDWGGDTIFVPVS  231 (587)
T ss_pred             HhhhccCCEEEEEEECCCCCCHhHHHHHHHHHHcCCCEEEEEECcccccCC-HHHHHHHHHHhhhhHHhcCCCceEEEEE
Confidence            35678899999999998776544433333333 578999999999996432 12233333332210      11488999


Q ss_pred             cCCCCCCCHHHHHHHHHH
Q psy15351         82 CRNPNCKGVQKILPTLQH   99 (352)
Q Consensus        82 a~~~~~~gi~~L~~~i~~   99 (352)
                      |+++  +|+.+|++++..
T Consensus       232 AktG--eGI~eLl~~I~~  247 (587)
T TIGR00487       232 ALTG--DGIDELLDMILL  247 (587)
T ss_pred             CCCC--CChHHHHHhhhh
Confidence            9999  999999998853

This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.

>PLN03126 Elongation factor Tu; Provisional

Probab=97.91  E-value=7.7e-05  Score=73.73  Aligned_cols=84  Identities=15%  Similarity=0.035  Sum_probs=57.7

Q ss_pred             hhHHHHHHHHhhccCEEEEEEcCCCCCCCcCHHHHHHHh-CCCC-EEEEEEcccCCCccch-----HHHHHHHHhhcCC-
Q psy15351          2 GRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQ-NIRP-MVLVLNKRDLINSKHE-----SLIEEKVRKEQSH-   73 (352)
Q Consensus         2 ~~~~~~~~~~i~~aD~vl~VvDar~p~~~~~~~l~~~l~-~~k~-~ilVlNK~Dl~~~~~~-----~~~~~~~~~~~~~-   73 (352)
                      .+.++++...+..+|++++|+|+..+......+...++. .+.| +++++||+|+++.+..     ++..+++++.+++ 
T Consensus       155 ~~f~~~~~~g~~~aD~ailVVda~~G~~~qt~e~~~~~~~~gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~l~~~g~~~  234 (478)
T PLN03126        155 ADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEELLELVELEVRELLSSYEFPG  234 (478)
T ss_pred             HHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEecccccCHHHHHHHHHHHHHHHHHhcCCCc
Confidence            356778888899999999999999876655544444444 5777 6788999999875432     1333444443332 


Q ss_pred             -CCcEEEeecCCC
Q psy15351         74 -ISEVIFTNCRNP   85 (352)
Q Consensus        74 -~~~v~~iSa~~~   85 (352)
                       ..+++++|+.++
T Consensus       235 ~~~~~vp~Sa~~g  247 (478)
T PLN03126        235 DDIPIISGSALLA  247 (478)
T ss_pred             CcceEEEEEcccc
Confidence             235888998876

>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases

Probab=97.91  E-value=1.7e-05  Score=62.92  Aligned_cols=62  Identities=21%  Similarity=0.236  Sum_probs=34.8

Q ss_pred             EEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCCcEEEEeCCCCCC
Q psy15351        170 TVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISL  233 (352)
Q Consensus       170 ~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~~  233 (352)
                      +|.++|.+|||||||+++|.+....  .........+.+..............+.++|++|-..
T Consensus         1 kI~V~G~~g~GKTsLi~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~   62 (119)
T PF08477_consen    1 KIVVLGDSGVGKTSLIRRLCGGEFP--DNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEE   62 (119)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSS----------SSTTSCEEEEEEEETTEEEEEEEEEESSSHC
T ss_pred             CEEEECcCCCCHHHHHHHHhcCCCc--ccccccccCCCcEEEEEEEecCCceEEEEEecCccce
Confidence            5899999999999999999973211  0011223333333321111111122478999999843

They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.

>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily

Probab=97.90  E-value=1.5e-05  Score=67.13  Aligned_cols=56  Identities=30%  Similarity=0.425  Sum_probs=34.6

Q ss_pred             EEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeee-eEEecCCC--cEEEEeCCCCCC
Q psy15351        170 TVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMS-QVKISEKP--LIYILDTPGISL  233 (352)
Q Consensus       170 ~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~-~~~~~~~~--~~~l~DtPGi~~  233 (352)
                      +|+++|.+|||||||++++...     .  ..+..+.++..... .... ++.  .+.++||||...
T Consensus         1 ki~vvG~~~~GKtsli~~~~~~-----~--~~~~~~~t~~~~~~~~~~~-~~~~~~~~i~D~~g~~~   59 (165)
T cd04146           1 KIAVLGASGVGKSALVVRFLTK-----R--FIGEYDPNLESLYSRQVTI-DGEQVSLEILDTAGQQQ   59 (165)
T ss_pred             CEEEECCCCCcHHHHHHHHHhC-----c--cccccCCChHHhceEEEEE-CCEEEEEEEEECCCCcc
Confidence            4899999999999999999852     1  12223333321111 1222 222  467999999874

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu

>cd04111 Rab39 Rab39 subfamily

Probab=97.90  E-value=3.7e-05  Score=67.91  Aligned_cols=58  Identities=24%  Similarity=0.357  Sum_probs=35.8

Q ss_pred             eEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeee-eEEecCCC--cEEEEeCCCCC
Q psy15351        169 TTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMS-QVKISEKP--LIYILDTPGIS  232 (352)
Q Consensus       169 ~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~-~~~~~~~~--~~~l~DtPGi~  232 (352)
                      ++|+++|.+|||||||+|++.+..     .... ..|.++.+... .+.+..+.  .+.++||||..
T Consensus         3 ~KIvvvG~~~vGKTsLi~~l~~~~-----~~~~-~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~   63 (211)
T cd04111           3 FRLIVIGDSTVGKSSLLKRFTEGR-----FAEV-SDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQE   63 (211)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCC-----CCCC-CCceeceEEEEEEEEECCCCEEEEEEEeCCcch
Confidence            789999999999999999999632     1111 11222222221 12222222  57899999954

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>PLN03110 Rab GTPase; Provisional

Probab=97.90  E-value=2.9e-05  Score=68.81  Aligned_cols=61  Identities=23%  Similarity=0.357  Sum_probs=37.3

Q ss_pred             cceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCC-CcEEEEeCCCCC
Q psy15351        167 YNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEK-PLIYILDTPGIS  232 (352)
Q Consensus       167 ~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~-~~~~l~DtPGi~  232 (352)
                      ..++|+++|.+|||||||++++.+..    ......+..|.+... ..+...+. -.+.++||||-.
T Consensus        11 ~~~Ki~ivG~~~vGKStLi~~l~~~~----~~~~~~~t~g~~~~~-~~v~~~~~~~~l~l~Dt~G~~   72 (216)
T PLN03110         11 YLFKIVLIGDSGVGKSNILSRFTRNE----FCLESKSTIGVEFAT-RTLQVEGKTVKAQIWDTAGQE   72 (216)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhcCC----CCCCCCCceeEEEEE-EEEEECCEEEEEEEEECCCcH
Confidence            45899999999999999999998631    111222333332211 12222221 157889999953

>cd04150 Arf1_5_like Arf1-Arf5-like subfamily

Probab=97.90  E-value=3.1e-05  Score=65.06  Aligned_cols=55  Identities=22%  Similarity=0.376  Sum_probs=34.3

Q ss_pred             eEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCCcEEEEeCCCCC
Q psy15351        169 TTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGIS  232 (352)
Q Consensus       169 ~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~  232 (352)
                      ++|+++|.+|||||||++++...     ......++-|....   .+. ...-.+.++||||..
T Consensus         1 ~kv~~~G~~~~GKTsli~~l~~~-----~~~~~~pt~g~~~~---~~~-~~~~~~~l~D~~G~~   55 (159)
T cd04150           1 MRILMVGLDAAGKTTILYKLKLG-----EIVTTIPTIGFNVE---TVE-YKNISFTVWDVGGQD   55 (159)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcC-----CCcccCCCCCcceE---EEE-ECCEEEEEEECCCCH
Confidence            47999999999999999999642     11111122222111   111 223468999999974

This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents

>cd04135 Tc10 TC10 subfamily

Probab=97.89  E-value=3.1e-05  Score=65.69  Aligned_cols=22  Identities=27%  Similarity=0.434  Sum_probs=20.4

Q ss_pred             eEEEEeCCCCCChHHHHHHHhC
Q psy15351        169 TTVMVVGVPNVGKSSIINALRS  190 (352)
Q Consensus       169 ~~v~i~G~pnvGKStliN~l~~  190 (352)
                      ++|+++|.+|+|||||++++..
T Consensus         1 ~ki~i~G~~~~GKTsl~~~~~~   22 (174)
T cd04135           1 LKCVVVGDGAVGKTCLLMSYAN   22 (174)
T ss_pred             CEEEEECCCCCCHHHHHHHHHh
Confidence            4799999999999999999986

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti

>PRK05306 infB translation initiation factor IF-2; Validated

Probab=97.89  E-value=7.1e-05  Score=77.84  Aligned_cols=88  Identities=11%  Similarity=0.147  Sum_probs=60.0

Q ss_pred             HHHhhccCEEEEEEcCCCCCCCcCHHHHHHHh-CCCCEEEEEEcccCCCccchHHHHHHHHhhcC------CCCcEEEee
Q psy15351          9 EKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQ-NIRPMVLVLNKRDLINSKHESLIEEKVRKEQS------HISEVIFTN   81 (352)
Q Consensus         9 ~~~i~~aD~vl~VvDar~p~~~~~~~l~~~l~-~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~------~~~~v~~iS   81 (352)
                      ...+..+|++|+|+|++++......+...+.. .+.|+++++||+|+...+ .......+.+.+.      ...+++++|
T Consensus       355 ~rga~~aDiaILVVdAddGv~~qT~e~i~~a~~~~vPiIVviNKiDl~~a~-~e~V~~eL~~~~~~~e~~g~~vp~vpvS  433 (787)
T PRK05306        355 ARGAQVTDIVVLVVAADDGVMPQTIEAINHAKAAGVPIIVAINKIDKPGAN-PDRVKQELSEYGLVPEEWGGDTIFVPVS  433 (787)
T ss_pred             HhhhhhCCEEEEEEECCCCCCHhHHHHHHHHHhcCCcEEEEEECccccccC-HHHHHHHHHHhcccHHHhCCCceEEEEe
Confidence            35678899999999999876544434334443 678999999999996532 1222222222111      012489999


Q ss_pred             cCCCCCCCHHHHHHHHHH
Q psy15351         82 CRNPNCKGVQKILPTLQH   99 (352)
Q Consensus        82 a~~~~~~gi~~L~~~i~~   99 (352)
                      |+++  .|+++|+++|..
T Consensus       434 AktG--~GI~eLle~I~~  449 (787)
T PRK05306        434 AKTG--EGIDELLEAILL  449 (787)
T ss_pred             CCCC--CCchHHHHhhhh
Confidence            9999  999999998864

>KOG1191|consensus

Probab=97.89  E-value=2.8e-05  Score=74.80  Aligned_cols=98  Identities=19%  Similarity=0.298  Sum_probs=69.1

Q ss_pred             hHHHHHHHHhhccCEEEEEEcCCCCCCCcCHHHHHHHh-------C------CCCEEEEEEcccCCCccchHHH--HHHH
Q psy15351          3 RGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQ-------N------IRPMVLVLNKRDLINSKHESLI--EEKV   67 (352)
Q Consensus         3 ~~~~~~~~~i~~aD~vl~VvDar~p~~~~~~~l~~~l~-------~------~k~~ilVlNK~Dl~~~~~~~~~--~~~~   67 (352)
                      -|++++++.+++||+|++|+|+....++.+-.+.+.+.       .      .+|.+++.||+|+.++-....|  +.|.
T Consensus       337 ~gI~rA~k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~~~~~~  416 (531)
T KOG1191|consen  337 LGIERARKRIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKIPVVYP  416 (531)
T ss_pred             HhHHHHHHHHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccccCCceecc
Confidence            47899999999999999999997666666666555553       1      2788999999999977321222  2222


Q ss_pred             HhhcCC-CCcEEEeecCCCCCCCHHHHHHHHHHHhh
Q psy15351         68 RKEQSH-ISEVIFTNCRNPNCKGVQKILPTLQHISD  102 (352)
Q Consensus        68 ~~~~~~-~~~v~~iSa~~~~~~gi~~L~~~i~~~~~  102 (352)
                      ...+.. +..+.++||.++  +|++.|...+.+.+.
T Consensus       417 ~~~~~~~~~i~~~vs~~tk--eg~~~L~~all~~~~  450 (531)
T KOG1191|consen  417 SAEGRSVFPIVVEVSCTTK--EGCERLSTALLNIVE  450 (531)
T ss_pred             ccccCcccceEEEeeechh--hhHHHHHHHHHHHHH
Confidence            222221 123455999999  999999998876554

>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site

Probab=97.88  E-value=3.9e-05  Score=66.33  Aligned_cols=65  Identities=22%  Similarity=0.295  Sum_probs=40.7

Q ss_pred             ceEEEEeCCCCCChHHHHHHHhCCCCCCCC------------ceecCCCCCceeEeeeeEEe--cCCCcEEEEeCCCCC
Q psy15351        168 NTTVMVVGVPNVGKSSIINALRSSHMKKGK------------AVPVGPKAGVTRSVMSQVKI--SEKPLIYILDTPGIS  232 (352)
Q Consensus       168 ~~~v~i~G~pnvGKStliN~l~~~~~~~~~------------~~~~~~~pg~T~~~~~~~~~--~~~~~~~l~DtPGi~  232 (352)
                      -.+|+++|..++|||||+++|.........            ........|.|.........  .....+.++||||..
T Consensus         3 ~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~   81 (188)
T PF00009_consen    3 IRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHE   81 (188)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSH
T ss_pred             EEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeeccccccc
Confidence            468999999999999999999853210000            00111234555554333333  445679999999963

The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....

>PRK09554 feoB ferrous iron transport protein B; Reviewed

Probab=97.88  E-value=7.9e-05  Score=77.73  Aligned_cols=84  Identities=18%  Similarity=0.207  Sum_probs=60.1

Q ss_pred             hhccCEEEEEEcCCCCCCCcCHHHH-HHHhCCCCEEEEEEcccCCCccchHHHHHHHHh-hcCCCCcEEEeecCCCCCCC
Q psy15351         12 LKNVDIVIEVHDSRMPFTGRNHLLQ-QSVQNIRPMVLVLNKRDLINSKHESLIEEKVRK-EQSHISEVIFTNCRNPNCKG   89 (352)
Q Consensus        12 i~~aD~vl~VvDar~p~~~~~~~l~-~~l~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~-~~~~~~~v~~iSa~~~~~~g   89 (352)
                      .+.+|+++.|+|+++.  .++..+. +..+.++|+++|+||+|+..+.......+.+++ .+.+   ++.+||+++  +|
T Consensus        83 ~~~aD~vI~VvDat~l--er~l~l~~ql~e~giPvIvVlNK~Dl~~~~~i~id~~~L~~~LG~p---VvpiSA~~g--~G  155 (772)
T PRK09554         83 SGDADLLINVVDASNL--ERNLYLTLQLLELGIPCIVALNMLDIAEKQNIRIDIDALSARLGCP---VIPLVSTRG--RG  155 (772)
T ss_pred             ccCCCEEEEEecCCcc--hhhHHHHHHHHHcCCCEEEEEEchhhhhccCcHHHHHHHHHHhCCC---EEEEEeecC--CC
Confidence            3589999999999863  2233333 222368999999999999755433333344433 4665   999999999  99


Q ss_pred             HHHHHHHHHHHhh
Q psy15351         90 VQKILPTLQHISD  102 (352)
Q Consensus        90 i~~L~~~i~~~~~  102 (352)
                      ++++++.+.+..+
T Consensus       156 IdeL~~~I~~~~~  168 (772)
T PRK09554        156 IEALKLAIDRHQA  168 (772)
T ss_pred             HHHHHHHHHHhhh
Confidence            9999999887653

>PRK14845 translation initiation factor IF-2; Provisional

Probab=97.88  E-value=9.5e-05  Score=78.79  Aligned_cols=91  Identities=15%  Similarity=0.173  Sum_probs=61.0

Q ss_pred             HHhhccCEEEEEEcCCCCCCCcCHHHHHHHh-CCCCEEEEEEcccCCCccc------------------hHHH-------
Q psy15351         10 KHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQ-NIRPMVLVLNKRDLINSKH------------------ESLI-------   63 (352)
Q Consensus        10 ~~i~~aD~vl~VvDar~p~~~~~~~l~~~l~-~~k~~ilVlNK~Dl~~~~~------------------~~~~-------   63 (352)
                      .....+|++++|+|+.+++.....+....++ .+.|+++|+||+|+.+...                  ..+.       
T Consensus       545 ~g~~~aDivlLVVDa~~Gi~~qT~e~I~~lk~~~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~~~~el~~~l~~v  624 (1049)
T PRK14845        545 RGGSLADLAVLVVDINEGFKPQTIEAINILRQYKTPFVVAANKIDLIPGWNISEDEPFLLNFNEQDQHALTELEIKLYEL  624 (1049)
T ss_pred             hhcccCCEEEEEEECcccCCHhHHHHHHHHHHcCCCEEEEEECCCCccccccccchhhhhhhhhhHHHHHHHHHHHHHHH
Confidence            3567799999999999876555544444444 6789999999999975321                  0011       


Q ss_pred             HHHHHhhcCC------------CCcEEEeecCCCCCCCHHHHHHHHHHHhh
Q psy15351         64 EEKVRKEQSH------------ISEVIFTNCRNPNCKGVQKILPTLQHISD  102 (352)
Q Consensus        64 ~~~~~~~~~~------------~~~v~~iSa~~~~~~gi~~L~~~i~~~~~  102 (352)
                      ...+.+.|+.            ..+++++||++|  +|+++|+.+|..+.+
T Consensus       625 ~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tG--eGId~Ll~~l~~l~~  673 (1049)
T PRK14845        625 IGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTG--EGIPELLMMVAGLAQ  673 (1049)
T ss_pred             hhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCC--CCHHHHHHHHHHhhH
Confidence            1112222221            126899999999  999999988865433

>TIGR02528 EutP ethanolamine utilization protein, EutP

Probab=97.86  E-value=1.6e-05  Score=65.16  Aligned_cols=21  Identities=29%  Similarity=0.613  Sum_probs=20.0

Q ss_pred             EEEEeCCCCCChHHHHHHHhC
Q psy15351        170 TVMVVGVPNVGKSSIINALRS  190 (352)
Q Consensus       170 ~v~i~G~pnvGKStliN~l~~  190 (352)
                      +|+++|.||||||||+|++.+
T Consensus         2 kv~liG~~~vGKSsL~~~l~~   22 (142)
T TIGR02528         2 RIMFIGSVGCGKTTLTQALQG   22 (142)
T ss_pred             eEEEECCCCCCHHHHHHHHcC
Confidence            689999999999999999986

This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.

>PLN03110 Rab GTPase; Provisional

Probab=97.86  E-value=0.00011  Score=65.06  Aligned_cols=88  Identities=16%  Similarity=0.033  Sum_probs=59.5

Q ss_pred             HHHhhccCEEEEEEcCCCCCCCcCHHHHHHH---h----CCCCEEEEEEcccCCCccch-HHHHHHHH-hhcCCCCcEEE
Q psy15351          9 EKHLKNVDIVIEVHDSRMPFTGRNHLLQQSV---Q----NIRPMVLVLNKRDLINSKHE-SLIEEKVR-KEQSHISEVIF   79 (352)
Q Consensus         9 ~~~i~~aD~vl~VvDar~p~~~~~~~l~~~l---~----~~k~~ilVlNK~Dl~~~~~~-~~~~~~~~-~~~~~~~~v~~   79 (352)
                      ...+..+|.+|+|+|.+++.+..  .+..++   .    .+.|+++|.||+|+...... .+....+. ..+.   +++.
T Consensus        79 ~~~~~~~~~~ilv~d~~~~~s~~--~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~~~~~~---~~~e  153 (216)
T PLN03110         79 SAYYRGAVGALLVYDITKRQTFD--NVQRWLRELRDHADSNIVIMMAGNKSDLNHLRSVAEEDGQALAEKEGL---SFLE  153 (216)
T ss_pred             HHHhCCCCEEEEEEECCChHHHH--HHHHHHHHHHHhCCCCCeEEEEEEChhcccccCCCHHHHHHHHHHcCC---EEEE
Confidence            34678999999999998764322  222222   1    36899999999999654321 22222332 2344   4999


Q ss_pred             eecCCCCCCCHHHHHHHHHHHhhh
Q psy15351         80 TNCRNPNCKGVQKILPTLQHISDN  103 (352)
Q Consensus        80 iSa~~~~~~gi~~L~~~i~~~~~~  103 (352)
                      +||+++  .|++++++.+.+.+..
T Consensus       154 ~SA~~g--~~v~~lf~~l~~~i~~  175 (216)
T PLN03110        154 TSALEA--TNVEKAFQTILLEIYH  175 (216)
T ss_pred             EeCCCC--CCHHHHHHHHHHHHHH
Confidence            999999  9999999988765543

>PRK10218 GTP-binding protein; Provisional

Probab=97.86  E-value=9.4e-05  Score=75.07  Aligned_cols=99  Identities=11%  Similarity=0.049  Sum_probs=68.6

Q ss_pred             HHHHHHHHhhccCEEEEEEcCCCCCCCcCHHHHHHHh-CCCCEEEEEEcccCCCcc---chHHHHHHHHhhcCC----CC
Q psy15351          4 GLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQ-NIRPMVLVLNKRDLINSK---HESLIEEKVRKEQSH----IS   75 (352)
Q Consensus         4 ~~~~~~~~i~~aD~vl~VvDar~p~~~~~~~l~~~l~-~~k~~ilVlNK~Dl~~~~---~~~~~~~~~~~~~~~----~~   75 (352)
                      ....+...+..+|.+++|+|+..........+...+. .+.|.++++||+|+....   ..++..+.|...+..    -.
T Consensus        81 f~~~v~~~l~~aDg~ILVVDa~~G~~~qt~~~l~~a~~~gip~IVviNKiD~~~a~~~~vl~ei~~l~~~l~~~~~~~~~  160 (607)
T PRK10218         81 FGGEVERVMSMVDSVLLVVDAFDGPMPQTRFVTKKAFAYGLKPIVVINKVDRPGARPDWVVDQVFDLFVNLDATDEQLDF  160 (607)
T ss_pred             hHHHHHHHHHhCCEEEEEEecccCccHHHHHHHHHHHHcCCCEEEEEECcCCCCCchhHHHHHHHHHHhccCccccccCC
Confidence            3455677899999999999998765544444443333 678999999999986533   234445554331111    12


Q ss_pred             cEEEeecCCCCCC----------CHHHHHHHHHHHhhhc
Q psy15351         76 EVIFTNCRNPNCK----------GVQKILPTLQHISDNM  104 (352)
Q Consensus        76 ~v~~iSa~~~~~~----------gi~~L~~~i~~~~~~~  104 (352)
                      +++++||.++  .          |+..|++.|.+.++..
T Consensus       161 PVi~~SA~~G--~~~~~~~~~~~~i~~Lld~Ii~~iP~P  197 (607)
T PRK10218        161 PIVYASALNG--IAGLDHEDMAEDMTPLYQAIVDHVPAP  197 (607)
T ss_pred             CEEEeEhhcC--cccCCccccccchHHHHHHHHHhCCCC
Confidence            4899999999  6          6889999988888743

>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases

Probab=97.86  E-value=3e-05  Score=65.70  Aligned_cols=57  Identities=23%  Similarity=0.301  Sum_probs=33.0

Q ss_pred             EEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCC-CcEEEEeCCCCCC
Q psy15351        171 VMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEK-PLIYILDTPGISL  233 (352)
Q Consensus       171 v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~-~~~~l~DtPGi~~  233 (352)
                      |+++|.+|||||||++++.+...      .....|.........+...+. -.+.++||||...
T Consensus         1 i~i~G~~~vGKTsli~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~   58 (174)
T smart00174        1 LVVVGDGAVGKTCLLISYTTNAF------PEDYVPTVFENYSADVEVDGKPVELGLWDTAGQED   58 (174)
T ss_pred             CEEECCCCCCHHHHHHHHHhCCC------CCCCCCcEEeeeeEEEEECCEEEEEEEEECCCCcc
Confidence            57999999999999999986321      111112211111112222221 1478999999653

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.

>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily

Probab=97.86  E-value=3.3e-05  Score=65.67  Aligned_cols=57  Identities=26%  Similarity=0.332  Sum_probs=34.3

Q ss_pred             EEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEee-eeEEecC-CCcEEEEeCCCCC
Q psy15351        170 TVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVM-SQVKISE-KPLIYILDTPGIS  232 (352)
Q Consensus       170 ~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~-~~~~~~~-~~~~~l~DtPGi~  232 (352)
                      +|+++|.+|||||||++++.+.....    ...++.|  .+.. ..+...+ ...+.++||||..
T Consensus         2 ki~ivG~~~vGKTsli~~~~~~~f~~----~~~~t~~--~~~~~~~~~~~~~~~~l~i~Dt~G~~   60 (170)
T cd04108           2 KVIVVGDLSVGKTCLINRFCKDVFDK----NYKATIG--VDFEMERFEILGVPFSLQLWDTAGQE   60 (170)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCC----CCCCcee--eEEEEEEEEECCEEEEEEEEeCCChH
Confidence            58999999999999999999632211    1112222  2221 1122221 1258899999964

Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re

>KOG0075|consensus

Probab=97.86  E-value=0.00018  Score=58.36  Aligned_cols=93  Identities=16%  Similarity=0.174  Sum_probs=65.1

Q ss_pred             HHHHHH-HhhccCEEEEEEcCCCCC--CCcCHHHHHHHh----CCCCEEEEEEcccCCCccchHHHHHHHHhhcCC---C
Q psy15351          5 LKDIEK-HLKNVDIVIEVHDSRMPF--TGRNHLLQQSVQ----NIRPMVLVLNKRDLINSKHESLIEEKVRKEQSH---I   74 (352)
Q Consensus         5 ~~~~~~-~i~~aD~vl~VvDar~p~--~~~~~~l~~~l~----~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~---~   74 (352)
                      .+.+|+ ....++++++++||.+|-  +..-.++..++.    .+.|++++-||.|+.+.-...+..+.+   |..   -
T Consensus        78 frsmWerycR~v~aivY~VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~AL~~~~li~rm---gL~sitd  154 (186)
T KOG0075|consen   78 FRSMWERYCRGVSAIVYVVDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGALSKIALIERM---GLSSITD  154 (186)
T ss_pred             HHHHHHHHhhcCcEEEEEeecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCcccccHHHHHHHh---Ccccccc
Confidence            345554 568899999999999863  222245555553    579999999999997654434444433   321   1


Q ss_pred             C--cEEEeecCCCCCCCHHHHHHHHHHHhh
Q psy15351         75 S--EVIFTNCRNPNCKGVQKILPTLQHISD  102 (352)
Q Consensus        75 ~--~v~~iSa~~~~~~gi~~L~~~i~~~~~  102 (352)
                      .  .++.+||++.  .+++.+++||.++..
T Consensus       155 REvcC~siScke~--~Nid~~~~Wli~hsk  182 (186)
T KOG0075|consen  155 REVCCFSISCKEK--VNIDITLDWLIEHSK  182 (186)
T ss_pred             ceEEEEEEEEcCC--ccHHHHHHHHHHHhh
Confidence            1  3678999999  999999999987654

>PTZ00369 Ras-like protein; Provisional

Probab=97.85  E-value=3.5e-05  Score=66.62  Aligned_cols=60  Identities=30%  Similarity=0.345  Sum_probs=36.1

Q ss_pred             ceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCC-CcEEEEeCCCCCC
Q psy15351        168 NTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEK-PLIYILDTPGISL  233 (352)
Q Consensus       168 ~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~-~~~~l~DtPGi~~  233 (352)
                      .++|+++|.+|||||||++++.+...    .....++.|.+..  ..+..... -.+.++||||...
T Consensus         5 ~~Ki~iiG~~~~GKTsLi~~~~~~~~----~~~~~~t~~~~~~--~~~~~~~~~~~l~i~Dt~G~~~   65 (189)
T PTZ00369          5 EYKLVVVGGGGVGKSALTIQFIQNHF----IDEYDPTIEDSYR--KQCVIDEETCLLDILDTAGQEE   65 (189)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCC----CcCcCCchhhEEE--EEEEECCEEEEEEEEeCCCCcc
Confidence            58999999999999999999986321    1112222222221  11112211 1367899999754

>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily

Probab=97.85  E-value=0.00014  Score=65.22  Aligned_cols=88  Identities=11%  Similarity=0.069  Sum_probs=59.2

Q ss_pred             HHhhccCEEEEEEcCCCCCCCcC--HHHHHHHh---CCCCEEEEEEcccCCCc------------c--chHHHHHHHHhh
Q psy15351         10 KHLKNVDIVIEVHDSRMPFTGRN--HLLQQSVQ---NIRPMVLVLNKRDLINS------------K--HESLIEEKVRKE   70 (352)
Q Consensus        10 ~~i~~aD~vl~VvDar~p~~~~~--~~l~~~l~---~~k~~ilVlNK~Dl~~~------------~--~~~~~~~~~~~~   70 (352)
                      .....+|++|+|.|..++.+..+  ..+...+.   .+.|+++|.||+||...            .  ..++..++.++.
T Consensus        80 ~~~~~ad~vIlVyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~  159 (232)
T cd04174          80 LCYSDSDAVLLCFDISRPETVDSALKKWKAEIMDYCPSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQL  159 (232)
T ss_pred             HHcCCCcEEEEEEECCChHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHc
Confidence            36789999999999987654432  12222222   46799999999998531            1  123444444445


Q ss_pred             cCCCCcEEEeecCCCCCC-CHHHHHHHHHHHh
Q psy15351         71 QSHISEVIFTNCRNPNCK-GVQKILPTLQHIS  101 (352)
Q Consensus        71 ~~~~~~v~~iSa~~~~~~-gi~~L~~~i~~~~  101 (352)
                      +..  .++.+||+++  + |+++++..+....
T Consensus       160 ~~~--~~~EtSAktg--~~~V~e~F~~~~~~~  187 (232)
T cd04174         160 GAE--VYLECSAFTS--EKSIHSIFRSASLLC  187 (232)
T ss_pred             CCC--EEEEccCCcC--CcCHHHHHHHHHHHH
Confidence            542  3788999999  8 7999998876543

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional

Probab=97.85  E-value=1.5e-05  Score=81.91  Aligned_cols=25  Identities=24%  Similarity=0.236  Sum_probs=22.7

Q ss_pred             CcceEEEEeCCCCCChHHHHHHHhC
Q psy15351        166 VYNTTVMVVGVPNVGKSSIINALRS  190 (352)
Q Consensus       166 ~~~~~v~i~G~pnvGKStliN~l~~  190 (352)
                      +..++|+++|.+|+|||||+|+|+.
T Consensus        22 ~~~~~i~iiGh~~~GKSTL~~~Ll~   46 (632)
T PRK05506         22 KSLLRFITCGSVDDGKSTLIGRLLY   46 (632)
T ss_pred             CCeeEEEEECCCCCChHHHHHHHHH
Confidence            4568999999999999999999985

>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily

Probab=97.85  E-value=0.00011  Score=62.25  Aligned_cols=86  Identities=22%  Similarity=0.196  Sum_probs=55.0

Q ss_pred             HHhhccCEEEEEEcCCCCCCCcCH-HHHHHHh-----CCCCEEEEEEcccCCCccch-HHHHHHH-HhhcCCCCcEEEee
Q psy15351         10 KHLKNVDIVIEVHDSRMPFTGRNH-LLQQSVQ-----NIRPMVLVLNKRDLINSKHE-SLIEEKV-RKEQSHISEVIFTN   81 (352)
Q Consensus        10 ~~i~~aD~vl~VvDar~p~~~~~~-~l~~~l~-----~~k~~ilVlNK~Dl~~~~~~-~~~~~~~-~~~~~~~~~v~~iS   81 (352)
                      ..+.++|++++|+|+.++.+..+. .+...+.     .+.|+++|.||+|+...... ....+.+ +.....   ++.+|
T Consensus        71 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~---~~e~S  147 (170)
T cd04115          71 HYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQRFADAHSMP---LFETS  147 (170)
T ss_pred             HhhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhhcCCCHHHHHHHHHHcCCc---EEEEe
Confidence            456889999999999876433221 1211111     35799999999998754331 2222222 223343   88999


Q ss_pred             cCC---CCCCCHHHHHHHHHHH
Q psy15351         82 CRN---PNCKGVQKILPTLQHI  100 (352)
Q Consensus        82 a~~---~~~~gi~~L~~~i~~~  100 (352)
                      |++   +  .++++++..+.+.
T Consensus       148 a~~~~~~--~~i~~~f~~l~~~  167 (170)
T cd04115         148 AKDPSEN--DHVEAIFMTLAHK  167 (170)
T ss_pred             ccCCcCC--CCHHHHHHHHHHH
Confidence            998   6  7888888776543

Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine

>cd04148 RGK RGK subfamily

Probab=97.85  E-value=3e-05  Score=68.98  Aligned_cols=22  Identities=41%  Similarity=0.670  Sum_probs=20.2

Q ss_pred             eEEEEeCCCCCChHHHHHHHhC
Q psy15351        169 TTVMVVGVPNVGKSSIINALRS  190 (352)
Q Consensus       169 ~~v~i~G~pnvGKStliN~l~~  190 (352)
                      ++|+++|.+|||||||++++..
T Consensus         1 ~KI~lvG~~gvGKTsLi~~~~~   22 (221)
T cd04148           1 YRVVMLGSPGVGKSSLASQFTS   22 (221)
T ss_pred             CEEEEECCCCCcHHHHHHHHhc
Confidence            4799999999999999999975

The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra

>cd04117 Rab15 Rab15 subfamily

Probab=97.84  E-value=0.00013  Score=61.30  Aligned_cols=84  Identities=11%  Similarity=0.053  Sum_probs=56.5

Q ss_pred             HHHhhccCEEEEEEcCCCCCCCcCHHHHHHHh-------CCCCEEEEEEcccCCCccch--HHHHHHHHhhcCCCCcEEE
Q psy15351          9 EKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQ-------NIRPMVLVLNKRDLINSKHE--SLIEEKVRKEQSHISEVIF   79 (352)
Q Consensus         9 ~~~i~~aD~vl~VvDar~p~~~~~~~l~~~l~-------~~k~~ilVlNK~Dl~~~~~~--~~~~~~~~~~~~~~~~v~~   79 (352)
                      ......+|++++|.|..++-+..  .+..++.       ...|+++|.||+|+.....+  ++...+.+..+.   +++.
T Consensus        67 ~~~~~~~~~~i~v~d~~~~~sf~--~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~~---~~~e  141 (161)
T cd04117          67 KQYYRRAQGIFLVYDISSERSYQ--HIMKWVSDVDEYAPEGVQKILIGNKADEEQKRQVGDEQGNKLAKEYGM---DFFE  141 (161)
T ss_pred             HHHhcCCcEEEEEEECCCHHHHH--HHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCC---EEEE
Confidence            34678899999999988753221  2222221       25789999999999754421  222222223344   4899


Q ss_pred             eecCCCCCCCHHHHHHHHHH
Q psy15351         80 TNCRNPNCKGVQKILPTLQH   99 (352)
Q Consensus        80 iSa~~~~~~gi~~L~~~i~~   99 (352)
                      +||+++  .|+++++.+|.+
T Consensus       142 ~Sa~~~--~~v~~~f~~l~~  159 (161)
T cd04117         142 TSACTN--SNIKESFTRLTE  159 (161)
T ss_pred             EeCCCC--CCHHHHHHHHHh
Confidence            999999  999999988864

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to

>cd04134 Rho3 Rho3 subfamily

Probab=97.84  E-value=6.2e-05  Score=65.10  Aligned_cols=88  Identities=14%  Similarity=0.129  Sum_probs=57.1

Q ss_pred             HhhccCEEEEEEcCCCCCCCcCH--HHHHHHh---CCCCEEEEEEcccCCCccchH--------------HHHHHHHhhc
Q psy15351         11 HLKNVDIVIEVHDSRMPFTGRNH--LLQQSVQ---NIRPMVLVLNKRDLINSKHES--------------LIEEKVRKEQ   71 (352)
Q Consensus        11 ~i~~aD~vl~VvDar~p~~~~~~--~l~~~l~---~~k~~ilVlNK~Dl~~~~~~~--------------~~~~~~~~~~   71 (352)
                      ....+|++++|.|..++-+..+.  .+...+.   .+.|+++|.||+||.......              +..+..++.+
T Consensus        68 ~~~~a~~~ilv~dv~~~~sf~~~~~~~~~~i~~~~~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  147 (189)
T cd04134          68 SYADTDVIMLCFSVDSPDSLENVESKWLGEIREHCPGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRIN  147 (189)
T ss_pred             cccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcC
Confidence            45789999999998876433221  1222222   468999999999997543211              1122222223


Q ss_pred             CCCCcEEEeecCCCCCCCHHHHHHHHHHHhh
Q psy15351         72 SHISEVIFTNCRNPNCKGVQKILPTLQHISD  102 (352)
Q Consensus        72 ~~~~~v~~iSa~~~~~~gi~~L~~~i~~~~~  102 (352)
                      .  ..++.+||+++  .|+++++.++.+.+-
T Consensus       148 ~--~~~~e~SAk~~--~~v~e~f~~l~~~~~  174 (189)
T cd04134         148 A--LRYLECSAKLN--RGVNEAFTEAARVAL  174 (189)
T ss_pred             C--CEEEEccCCcC--CCHHHHHHHHHHHHh
Confidence            1  13889999999  999999998876543

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily

Probab=97.84  E-value=7e-05  Score=63.38  Aligned_cols=91  Identities=15%  Similarity=0.068  Sum_probs=57.1

Q ss_pred             HHHhhccCEEEEEEcCCCCCCCcC--HHHHHHHh----CCCCEEEEEEcccCCCccchHHHHHHHHhhcC----CC-CcE
Q psy15351          9 EKHLKNVDIVIEVHDSRMPFTGRN--HLLQQSVQ----NIRPMVLVLNKRDLINSKHESLIEEKVRKEQS----HI-SEV   77 (352)
Q Consensus         9 ~~~i~~aD~vl~VvDar~p~~~~~--~~l~~~l~----~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~----~~-~~v   77 (352)
                      ...+..+|++++|+|+.++.+..+  ..+..+++    .++|+++|+||+|+.......+..+.+.-...    .. -.+
T Consensus        61 ~~~~~~a~~ii~V~D~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~  140 (167)
T cd04161          61 VNYYAEAHGLVFVVDSSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALLGADVIEYLSLEKLVNENKSLCHI  140 (167)
T ss_pred             HHHHcCCCEEEEEEECCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCCCHHHHHHhcCcccccCCCCceEEE
Confidence            467899999999999987642211  12223332    36899999999999765544444443311111    00 135


Q ss_pred             EEeecCCCCC----CCHHHHHHHHHH
Q psy15351         78 IFTNCRNPNC----KGVQKILPTLQH   99 (352)
Q Consensus        78 ~~iSa~~~~~----~gi~~L~~~i~~   99 (352)
                      +.+||+++.+    .|+.+-++||.+
T Consensus       141 ~~~Sa~~g~~~~~~~g~~~~~~wl~~  166 (167)
T cd04161         141 EPCSAIEGLGKKIDPSIVEGLRWLLA  166 (167)
T ss_pred             EEeEceeCCCCccccCHHHHHHHHhc
Confidence            6689988521    679999988853

Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.

>cd01874 Cdc42 Cdc42 subfamily

Probab=97.84  E-value=7e-05  Score=64.00  Aligned_cols=86  Identities=14%  Similarity=0.137  Sum_probs=55.8

Q ss_pred             HHhhccCEEEEEEcCCCCCCCcCH--HHHHHHh---CCCCEEEEEEcccCCCccch--------------HHHHHHHHhh
Q psy15351         10 KHLKNVDIVIEVHDSRMPFTGRNH--LLQQSVQ---NIRPMVLVLNKRDLINSKHE--------------SLIEEKVRKE   70 (352)
Q Consensus        10 ~~i~~aD~vl~VvDar~p~~~~~~--~l~~~l~---~~k~~ilVlNK~Dl~~~~~~--------------~~~~~~~~~~   70 (352)
                      ..+..+|++++|.|..++.+..+.  .+...+.   .+.|+++|.||+|+.+....              ++..++.++.
T Consensus        68 ~~~~~a~~~ilv~d~~~~~s~~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~  147 (175)
T cd01874          68 LSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDL  147 (175)
T ss_pred             hhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHh
Confidence            367799999999999876433221  1222222   46799999999998654211              1111122222


Q ss_pred             cCCCCcEEEeecCCCCCCCHHHHHHHHHH
Q psy15351         71 QSHISEVIFTNCRNPNCKGVQKILPTLQH   99 (352)
Q Consensus        71 ~~~~~~v~~iSa~~~~~~gi~~L~~~i~~   99 (352)
                      +..  .++.+||+++  .|++++++.+..
T Consensus       148 ~~~--~~~e~SA~tg--~~v~~~f~~~~~  172 (175)
T cd01874         148 KAV--KYVECSALTQ--KGLKNVFDEAIL  172 (175)
T ss_pred             CCc--EEEEecCCCC--CCHHHHHHHHHH
Confidence            311  4889999999  999999987754

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi

>KOG1487|consensus

Probab=97.83  E-value=2.4e-05  Score=69.30  Aligned_cols=60  Identities=30%  Similarity=0.346  Sum_probs=50.3

Q ss_pred             eEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCCcEEEEeCCCCCCC
Q psy15351        169 TTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLP  234 (352)
Q Consensus       169 ~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~~~  234 (352)
                      -+|+++|+|.|||||++..|++      ....+...-|||-..+.++....+..+.+.|.||++..
T Consensus        60 a~vg~vgFPSvGksTl~~~l~g------~~s~vasyefttl~~vpG~~~y~gaKiqlldlpgiieg  119 (358)
T KOG1487|consen   60 ARVGFVGFPSVGKSTLLSKLTG------TFSEVAAYEFTTLTTVPGVIRYKGAKIQLLDLPGIIEG  119 (358)
T ss_pred             eeeeEEecCccchhhhhhhhcC------CCCccccccceeEEEecceEeccccceeeecCcchhcc
Confidence            4899999999999999999985      45567777888777666666667788999999999975

>cd04117 Rab15 Rab15 subfamily

Probab=97.82  E-value=4e-05  Score=64.38  Aligned_cols=22  Identities=18%  Similarity=0.484  Sum_probs=20.2

Q ss_pred             eEEEEeCCCCCChHHHHHHHhC
Q psy15351        169 TTVMVVGVPNVGKSSIINALRS  190 (352)
Q Consensus       169 ~~v~i~G~pnvGKStliN~l~~  190 (352)
                      ++|+++|.+|||||||++.+..
T Consensus         1 ~ki~vvG~~~~GKTsli~~~~~   22 (161)
T cd04117           1 FRLLLIGDSGVGKTCLLCRFTD   22 (161)
T ss_pred             CEEEEECcCCCCHHHHHHHHhc
Confidence            3699999999999999999986

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to

>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor

Probab=97.82  E-value=5.1e-05  Score=64.77  Aligned_cols=58  Identities=19%  Similarity=0.288  Sum_probs=36.3

Q ss_pred             cceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCCcEEEEeCCCCCC
Q psy15351        167 YNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISL  233 (352)
Q Consensus       167 ~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~~  233 (352)
                      ..++|+++|.+|||||||++.+...     .....  .|.+..+.. .+. ...-.+.++||||...
T Consensus        12 ~~~ki~l~G~~~~GKTsL~~~~~~~-----~~~~~--~~t~~~~~~-~~~-~~~~~l~l~D~~G~~~   69 (175)
T smart00177       12 KEMRILMVGLDAAGKTTILYKLKLG-----ESVTT--IPTIGFNVE-TVT-YKNISFTVWDVGGQDK   69 (175)
T ss_pred             CccEEEEEcCCCCCHHHHHHHHhcC-----CCCCc--CCccccceE-EEE-ECCEEEEEEECCCChh
Confidence            3589999999999999999999641     11111  222211111 121 2334688999999643

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).

>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]

Probab=97.82  E-value=0.00017  Score=68.73  Aligned_cols=99  Identities=11%  Similarity=0.166  Sum_probs=73.0

Q ss_pred             hhHHHHHHHHhhccCEEEEEEcCCCCCCCcCHHHHHHHh--CCCCEEEEEEcccCCCccchHHHHHHHHhh-cCCCCcEE
Q psy15351          2 GRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQ--NIRPMVLVLNKRDLINSKHESLIEEKVRKE-QSHISEVI   78 (352)
Q Consensus         2 ~~~~~~~~~~i~~aD~vl~VvDar~p~~~~~~~l~~~l~--~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~-~~~~~~v~   78 (352)
                      .+.+..+...+..+|..++|||+.+.+....-+....+.  ..+..++|+||+|.+++...++..+.+.+. .+.-.+++
T Consensus        61 ~~~i~~miag~~~~d~alLvV~~deGl~~qtgEhL~iLdllgi~~giivltk~D~~d~~r~e~~i~~Il~~l~l~~~~i~  140 (447)
T COG3276          61 PDFISNLLAGLGGIDYALLVVAADEGLMAQTGEHLLILDLLGIKNGIIVLTKADRVDEARIEQKIKQILADLSLANAKIF  140 (447)
T ss_pred             HHHHHHHHhhhcCCceEEEEEeCccCcchhhHHHHHHHHhcCCCceEEEEeccccccHHHHHHHHHHHHhhccccccccc
Confidence            356777888889999999999998887766554444444  445569999999999876554444433221 12223589


Q ss_pred             EeecCCCCCCCHHHHHHHHHHHhh
Q psy15351         79 FTNCRNPNCKGVQKILPTLQHISD  102 (352)
Q Consensus        79 ~iSa~~~~~~gi~~L~~~i~~~~~  102 (352)
                      .+|+.++  +|+++|.+.|.++..
T Consensus       141 ~~s~~~g--~GI~~Lk~~l~~L~~  162 (447)
T COG3276         141 KTSAKTG--RGIEELKNELIDLLE  162 (447)
T ss_pred             ccccccC--CCHHHHHHHHHHhhh
Confidence            9999999  999999999998873

>cd04135 Tc10 TC10 subfamily

Probab=97.82  E-value=9.4e-05  Score=62.66  Aligned_cols=85  Identities=13%  Similarity=0.102  Sum_probs=55.4

Q ss_pred             HhhccCEEEEEEcCCCCCCCcCH--HHHHHHh---CCCCEEEEEEcccCCCccc--------------hHHHHHHHHhhc
Q psy15351         11 HLKNVDIVIEVHDSRMPFTGRNH--LLQQSVQ---NIRPMVLVLNKRDLINSKH--------------ESLIEEKVRKEQ   71 (352)
Q Consensus        11 ~i~~aD~vl~VvDar~p~~~~~~--~l~~~l~---~~k~~ilVlNK~Dl~~~~~--------------~~~~~~~~~~~~   71 (352)
                      ....+|++++|+|..++-+..+.  .+...+.   .+.|+++|.||+|+.+...              .++..++.++.+
T Consensus        68 ~~~~~~~~ilv~~~~~~~s~~~~~~~~~~~l~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  147 (174)
T cd04135          68 SYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIG  147 (174)
T ss_pred             cCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcC
Confidence            45788999999999876432211  1222222   5789999999999865421              111222223334


Q ss_pred             CCCCcEEEeecCCCCCCCHHHHHHHHHH
Q psy15351         72 SHISEVIFTNCRNPNCKGVQKILPTLQH   99 (352)
Q Consensus        72 ~~~~~v~~iSa~~~~~~gi~~L~~~i~~   99 (352)
                      ..  +++.+||+++  .|++++++.+.+
T Consensus       148 ~~--~~~e~Sa~~~--~gi~~~f~~~~~  171 (174)
T cd04135         148 AH--CYVECSALTQ--KGLKTVFDEAIL  171 (174)
T ss_pred             CC--EEEEecCCcC--CCHHHHHHHHHH
Confidence            32  5889999999  999999987754

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti

>PRK12736 elongation factor Tu; Reviewed

Probab=97.81  E-value=3.9e-05  Score=74.28  Aligned_cols=68  Identities=19%  Similarity=0.277  Sum_probs=46.0

Q ss_pred             cCcceEEEEeCCCCCChHHHHHHHhCCCCCCC-Cce---------ecCCCCCceeEeeeeEEecCCCcEEEEeCCCCC
Q psy15351        165 EVYNTTVMVVGVPNVGKSSIINALRSSHMKKG-KAV---------PVGPKAGVTRSVMSQVKISEKPLIYILDTPGIS  232 (352)
Q Consensus       165 ~~~~~~v~i~G~pnvGKStliN~l~~~~~~~~-~~~---------~~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~  232 (352)
                      .++.++|+++|.+++|||||+++|++...... ...         ......|+|.+.........+.++.|+||||..
T Consensus         9 ~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~   86 (394)
T PRK12736          9 SKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHA   86 (394)
T ss_pred             CCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHH
Confidence            45679999999999999999999986311000 011         111267899887543333345578999999953

>cd01870 RhoA_like RhoA-like subfamily

Probab=97.81  E-value=9.3e-05  Score=62.74  Aligned_cols=86  Identities=19%  Similarity=0.260  Sum_probs=54.5

Q ss_pred             HhhccCEEEEEEcCCCCCCCcC--HHHHHHHh---CCCCEEEEEEcccCCCccchH--------------HHHHHHHhhc
Q psy15351         11 HLKNVDIVIEVHDSRMPFTGRN--HLLQQSVQ---NIRPMVLVLNKRDLINSKHES--------------LIEEKVRKEQ   71 (352)
Q Consensus        11 ~i~~aD~vl~VvDar~p~~~~~--~~l~~~l~---~~k~~ilVlNK~Dl~~~~~~~--------------~~~~~~~~~~   71 (352)
                      .+.++|++++|.|..++-+..+  ..+...++   .+.|+++|.||+|+.+.....              +..+..+..+
T Consensus        69 ~~~~~d~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~  148 (175)
T cd01870          69 SYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIG  148 (175)
T ss_pred             ccCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcC
Confidence            5678999999999876532111  11112122   478999999999987543211              1111111222


Q ss_pred             CCCCcEEEeecCCCCCCCHHHHHHHHHHH
Q psy15351         72 SHISEVIFTNCRNPNCKGVQKILPTLQHI  100 (352)
Q Consensus        72 ~~~~~v~~iSa~~~~~~gi~~L~~~i~~~  100 (352)
                      ..  +++.+||+++  .|+++++++|.+.
T Consensus       149 ~~--~~~~~Sa~~~--~~v~~lf~~l~~~  173 (175)
T cd01870         149 AF--GYMECSAKTK--EGVREVFEMATRA  173 (175)
T ss_pred             Cc--EEEEeccccC--cCHHHHHHHHHHH
Confidence            22  5899999999  9999999988653

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl

>TIGR00475 selB selenocysteine-specific elongation factor SelB

Probab=97.81  E-value=3.9e-05  Score=77.80  Aligned_cols=60  Identities=20%  Similarity=0.248  Sum_probs=41.6

Q ss_pred             eEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCCcEEEEeCCCC
Q psy15351        169 TTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGI  231 (352)
Q Consensus       169 ~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi  231 (352)
                      +.|+++|.+|+|||||+|+|++...   ........+|+|.+.........+..+.++||||.
T Consensus         1 ~~I~iiG~~d~GKTTLi~aLtg~~~---d~~~eE~~rGiTid~~~~~~~~~~~~v~~iDtPGh   60 (581)
T TIGR00475         1 MIIATAGHVDHGKTTLLKALTGIAA---DRLPEEKKRGMTIDLGFAYFPLPDYRLGFIDVPGH   60 (581)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCccC---cCChhHhcCCceEEeEEEEEEeCCEEEEEEECCCH
Confidence            4689999999999999999996321   11112235788887654333333457899999995

In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.

>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily

Probab=97.80  E-value=5.4e-05  Score=64.47  Aligned_cols=23  Identities=26%  Similarity=0.452  Sum_probs=21.1

Q ss_pred             ceEEEEeCCCCCChHHHHHHHhC
Q psy15351        168 NTTVMVVGVPNVGKSSIINALRS  190 (352)
Q Consensus       168 ~~~v~i~G~pnvGKStliN~l~~  190 (352)
                      .++|+++|.+|||||||++++..
T Consensus         2 ~~ki~vvG~~~vGKTsL~~~~~~   24 (172)
T cd04141           2 EYKIVMLGAGGVGKSAVTMQFIS   24 (172)
T ss_pred             ceEEEEECCCCCcHHHHHHHHHh
Confidence            36899999999999999999986

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign

>PLN00223 ADP-ribosylation factor; Provisional

Probab=97.80  E-value=5.9e-05  Score=64.87  Aligned_cols=56  Identities=21%  Similarity=0.360  Sum_probs=36.7

Q ss_pred             cceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCCcEEEEeCCCC
Q psy15351        167 YNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGI  231 (352)
Q Consensus       167 ~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi  231 (352)
                      ..++|+++|.+|||||||++++...     ......++.|.+..   .+. ..+-.+.++||||-
T Consensus        16 ~~~ki~ivG~~~~GKTsl~~~l~~~-----~~~~~~pt~g~~~~---~~~-~~~~~~~i~D~~Gq   71 (181)
T PLN00223         16 KEMRILMVGLDAAGKTTILYKLKLG-----EIVTTIPTIGFNVE---TVE-YKNISFTVWDVGGQ   71 (181)
T ss_pred             CccEEEEECCCCCCHHHHHHHHccC-----CCccccCCcceeEE---EEE-ECCEEEEEEECCCC
Confidence            4579999999999999999999752     22222333333221   121 22346899999995

>PLN03108 Rab family protein; Provisional

Probab=97.80  E-value=4.7e-05  Score=67.14  Aligned_cols=60  Identities=22%  Similarity=0.273  Sum_probs=36.2

Q ss_pred             ceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCC-CcEEEEeCCCCC
Q psy15351        168 NTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEK-PLIYILDTPGIS  232 (352)
Q Consensus       168 ~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~-~~~~l~DtPGi~  232 (352)
                      .++|+++|.+|||||||+|++.+...    .....+..|.+.... .+.+.+. -.+.++||||..
T Consensus         6 ~~kivivG~~gvGKStLi~~l~~~~~----~~~~~~ti~~~~~~~-~i~~~~~~i~l~l~Dt~G~~   66 (210)
T PLN03108          6 LFKYIIIGDTGVGKSCLLLQFTDKRF----QPVHDLTIGVEFGAR-MITIDNKPIKLQIWDTAGQE   66 (210)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCCC----CCCCCCCccceEEEE-EEEECCEEEEEEEEeCCCcH
Confidence            48899999999999999999986321    111122233332211 1222211 147799999964

>cd01870 RhoA_like RhoA-like subfamily

Probab=97.80  E-value=5e-05  Score=64.42  Aligned_cols=22  Identities=18%  Similarity=0.427  Sum_probs=20.5

Q ss_pred             eEEEEeCCCCCChHHHHHHHhC
Q psy15351        169 TTVMVVGVPNVGKSSIINALRS  190 (352)
Q Consensus       169 ~~v~i~G~pnvGKStliN~l~~  190 (352)
                      .+|+++|.+|||||||++++.+
T Consensus         2 ~ki~iiG~~~~GKTsl~~~~~~   23 (175)
T cd01870           2 KKLVIVGDGACGKTCLLIVFSK   23 (175)
T ss_pred             cEEEEECCCCCCHHHHHHHHhc
Confidence            4799999999999999999986

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl

>TIGR00485 EF-Tu translation elongation factor TU

Probab=97.79  E-value=4.2e-05  Score=74.07  Aligned_cols=67  Identities=21%  Similarity=0.265  Sum_probs=44.8

Q ss_pred             CcceEEEEeCCCCCChHHHHHHHhCCCCC-CCCce---------ecCCCCCceeEeeeeEEecCCCcEEEEeCCCCC
Q psy15351        166 VYNTTVMVVGVPNVGKSSIINALRSSHMK-KGKAV---------PVGPKAGVTRSVMSQVKISEKPLIYILDTPGIS  232 (352)
Q Consensus       166 ~~~~~v~i~G~pnvGKStliN~l~~~~~~-~~~~~---------~~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~  232 (352)
                      .+.++|+++|.+++|||||+++|++.-.. .+...         ......|+|.+.........+.++.|+||||..
T Consensus        10 ~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~   86 (394)
T TIGR00485        10 KPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHA   86 (394)
T ss_pred             CceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchH
Confidence            56799999999999999999999742000 00001         112248899887543332334568999999975

This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily

Probab=97.79  E-value=9.7e-05  Score=63.66  Aligned_cols=86  Identities=17%  Similarity=0.096  Sum_probs=57.1

Q ss_pred             HHhhccCEEEEEEcCCCCCCCcC--HHHHHHHh---CCCCEEEEEEcccCCCc--------------cchHHHHHHHHhh
Q psy15351         10 KHLKNVDIVIEVHDSRMPFTGRN--HLLQQSVQ---NIRPMVLVLNKRDLINS--------------KHESLIEEKVRKE   70 (352)
Q Consensus        10 ~~i~~aD~vl~VvDar~p~~~~~--~~l~~~l~---~~k~~ilVlNK~Dl~~~--------------~~~~~~~~~~~~~   70 (352)
                      .....+|++|+|.|..++.+..+  ..+.+.++   ...|+++|.||+||.+.              -..++..++.++.
T Consensus        72 ~~~~~ad~~ilvyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~  151 (182)
T cd04172          72 LSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQI  151 (182)
T ss_pred             hhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHc
Confidence            35688999999999987744322  12222222   46899999999998541              1123334444444


Q ss_pred             cCCCCcEEEeecCCCCCCC-HHHHHHHHHH
Q psy15351         71 QSHISEVIFTNCRNPNCKG-VQKILPTLQH   99 (352)
Q Consensus        71 ~~~~~~v~~iSa~~~~~~g-i~~L~~~i~~   99 (352)
                      +..  +++.+||+++  .| +++++..+.+
T Consensus       152 ~~~--~~~E~SAk~~--~n~v~~~F~~~~~  177 (182)
T cd04172         152 GAA--TYIECSALQS--ENSVRDIFHVATL  177 (182)
T ss_pred             CCC--EEEECCcCCC--CCCHHHHHHHHHH
Confidence            531  3889999999  98 9999887654

Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight

>CHL00189 infB translation initiation factor 2; Provisional

Probab=97.78  E-value=4e-05  Score=78.99  Aligned_cols=61  Identities=25%  Similarity=0.453  Sum_probs=42.4

Q ss_pred             CcceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeee-EEec---CCCcEEEEeCCCCC
Q psy15351        166 VYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQ-VKIS---EKPLIYILDTPGIS  232 (352)
Q Consensus       166 ~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~-~~~~---~~~~~~l~DtPGi~  232 (352)
                      ++...|+++|.+|+|||||+++|+..      ....+..+|.|.+.... +.+.   .+..+.|+||||..
T Consensus       242 ~r~p~V~IvGhvdvGKTSLld~L~~~------~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe  306 (742)
T CHL00189        242 NRPPIVTILGHVDHGKTTLLDKIRKT------QIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHE  306 (742)
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHHhc------cCccccCCccccccceEEEEEEecCCceEEEEEECCcHH
Confidence            46789999999999999999999852      22334456777654321 1111   23579999999963

>cd01875 RhoG RhoG subfamily

Probab=97.77  E-value=0.00011  Score=63.82  Aligned_cols=87  Identities=16%  Similarity=0.162  Sum_probs=56.8

Q ss_pred             HhhccCEEEEEEcCCCCCCCcCH--HHHHHHh---CCCCEEEEEEcccCCCccc--------------hHHHHHHHHhhc
Q psy15351         11 HLKNVDIVIEVHDSRMPFTGRNH--LLQQSVQ---NIRPMVLVLNKRDLINSKH--------------ESLIEEKVRKEQ   71 (352)
Q Consensus        11 ~i~~aD~vl~VvDar~p~~~~~~--~l~~~l~---~~k~~ilVlNK~Dl~~~~~--------------~~~~~~~~~~~~   71 (352)
                      ....+|++|+|.|..++.+..+-  .+...+.   .+.|+++|.||.||.+...              ..+..++.++.+
T Consensus        71 ~~~~a~~~ilvydit~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~  150 (191)
T cd01875          71 SYPQTNVFIICFSIASPSSYENVRHKWHPEVCHHCPNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIH  150 (191)
T ss_pred             hccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcC
Confidence            56789999999999876543221  1222121   4689999999999964321              011122222233


Q ss_pred             CCCCcEEEeecCCCCCCCHHHHHHHHHHHh
Q psy15351         72 SHISEVIFTNCRNPNCKGVQKILPTLQHIS  101 (352)
Q Consensus        72 ~~~~~v~~iSa~~~~~~gi~~L~~~i~~~~  101 (352)
                      ..  +++.+||+++  .|+++++.++.+.+
T Consensus       151 ~~--~~~e~SAk~g--~~v~e~f~~l~~~~  176 (191)
T cd01875         151 AV--KYLECSALNQ--DGVKEVFAEAVRAV  176 (191)
T ss_pred             Cc--EEEEeCCCCC--CCHHHHHHHHHHHH
Confidence            21  4889999999  99999999887654

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin

>cd04168 TetM_like Tet(M)-like subfamily

Probab=97.76  E-value=0.00027  Score=63.54  Aligned_cols=54  Identities=19%  Similarity=0.223  Sum_probs=41.6

Q ss_pred             HHHHHHHHhhccCEEEEEEcCCCCCCCcCHHHHHHHh-CCCCEEEEEEcccCCCc
Q psy15351          4 GLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQ-NIRPMVLVLNKRDLINS   57 (352)
Q Consensus         4 ~~~~~~~~i~~aD~vl~VvDar~p~~~~~~~l~~~l~-~~k~~ilVlNK~Dl~~~   57 (352)
                      ....+...+..+|.+++|+|+..+.......+.+++. .+.|+++++||+|+...
T Consensus        77 f~~~~~~~l~~aD~~IlVvd~~~g~~~~~~~~~~~~~~~~~P~iivvNK~D~~~a  131 (237)
T cd04168          77 FIAEVERSLSVLDGAILVISAVEGVQAQTRILWRLLRKLNIPTIIFVNKIDRAGA  131 (237)
T ss_pred             hHHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccccCC
Confidence            3456778899999999999999876544444445444 68999999999998753

Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.

>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]

Probab=97.76  E-value=5.9e-05  Score=69.77  Aligned_cols=83  Identities=18%  Similarity=0.186  Sum_probs=58.0

Q ss_pred             HHHHHHhhccCEEEEEEcCCCCCCC---cCHHHHHHHhCCCCEEEEEEcccCCCccc--hHHH----HHHHHhhcCCCCc
Q psy15351          6 KDIEKHLKNVDIVIEVHDSRMPFTG---RNHLLQQSVQNIRPMVLVLNKRDLINSKH--ESLI----EEKVRKEQSHISE   76 (352)
Q Consensus         6 ~~~~~~i~~aD~vl~VvDar~p~~~---~~~~l~~~l~~~k~~ilVlNK~Dl~~~~~--~~~~----~~~~~~~~~~~~~   76 (352)
                      |.|-.-++.||+.|+++|||..+..   +...+..++ .-+.+++.+||+||++-++  .+++    ..+..+.+.....
T Consensus       101 RNMaTGASTadlAIlLVDAR~Gvl~QTrRHs~I~sLL-GIrhvvvAVNKmDLvdy~e~~F~~I~~dy~~fa~~L~~~~~~  179 (431)
T COG2895         101 RNMATGASTADLAILLVDARKGVLEQTRRHSFIASLL-GIRHVVVAVNKMDLVDYSEEVFEAIVADYLAFAAQLGLKDVR  179 (431)
T ss_pred             hhhhcccccccEEEEEEecchhhHHHhHHHHHHHHHh-CCcEEEEEEeeecccccCHHHHHHHHHHHHHHHHHcCCCcce
Confidence            4555667889999999999987644   334555555 6678899999999998654  2333    3333344555446


Q ss_pred             EEEeecCCCCCCCHH
Q psy15351         77 VIFTNCRNPNCKGVQ   91 (352)
Q Consensus        77 v~~iSa~~~~~~gi~   91 (352)
                      ++++||..|  .|+-
T Consensus       180 ~IPiSAl~G--DNV~  192 (431)
T COG2895         180 FIPISALLG--DNVV  192 (431)
T ss_pred             EEechhccC--Cccc
Confidence            889999998  6643

>cd04143 Rhes_like Rhes_like subfamily

Probab=97.75  E-value=0.00029  Score=63.81  Aligned_cols=87  Identities=16%  Similarity=0.171  Sum_probs=57.8

Q ss_pred             HhhccCEEEEEEcCCCCCCCcC--HHHHHHHh------------CCCCEEEEEEcccCCCcc--chHHHHHHHHhh-cCC
Q psy15351         11 HLKNVDIVIEVHDSRMPFTGRN--HLLQQSVQ------------NIRPMVLVLNKRDLINSK--HESLIEEKVRKE-QSH   73 (352)
Q Consensus        11 ~i~~aD~vl~VvDar~p~~~~~--~~l~~~l~------------~~k~~ilVlNK~Dl~~~~--~~~~~~~~~~~~-~~~   73 (352)
                      .+..+|++|+|.|..++.+..+  ..+.++..            .+.|+++|.||+|+....  ..++..+++... +. 
T Consensus        68 ~~~~ad~iIlVfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~~~~~-  146 (247)
T cd04143          68 SILTGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGGDENC-  146 (247)
T ss_pred             HhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHHHHHhcCCC-
Confidence            4678999999999986532211  11112211            257999999999997522  233333443321 23 


Q ss_pred             CCcEEEeecCCCCCCCHHHHHHHHHHHhh
Q psy15351         74 ISEVIFTNCRNPNCKGVQKILPTLQHISD  102 (352)
Q Consensus        74 ~~~v~~iSa~~~~~~gi~~L~~~i~~~~~  102 (352)
                        .++.+||+++  .|+++++++|.++..
T Consensus       147 --~~~evSAktg--~gI~elf~~L~~~~~  171 (247)
T cd04143         147 --AYFEVSAKKN--SNLDEMFRALFSLAK  171 (247)
T ss_pred             --EEEEEeCCCC--CCHHHHHHHHHHHhc
Confidence              4899999999  999999999987653

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l

>cd01882 BMS1 Bms1

Probab=97.75  E-value=6.9e-05  Score=66.87  Aligned_cols=59  Identities=25%  Similarity=0.330  Sum_probs=40.5

Q ss_pred             cCcceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCCcEEEEeCCCCC
Q psy15351        165 EVYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGIS  232 (352)
Q Consensus       165 ~~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~  232 (352)
                      ..++..|+++|.||+|||||+|+|.+.    .....++...|+. .    +....+.++.++||||..
T Consensus        36 ~~~~~~i~ivG~~~~GKstl~~~l~~~----~~~~~~~~~~g~i-~----i~~~~~~~i~~vDtPg~~   94 (225)
T cd01882          36 EPPPLVVAVVGPPGVGKTTLIKSLVKN----YTKQNISDIKGPI-T----VVTGKKRRLTFIECPNDI   94 (225)
T ss_pred             cCCCCEEEEECCCCCCHHHHHHHHHhh----cccCccccccccE-E----EEecCCceEEEEeCCchH
Confidence            467788999999999999999999863    1222334445531 1    112245679999999843

Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.

>PRK04004 translation initiation factor IF-2; Validated

Probab=97.74  E-value=0.00025  Score=71.91  Aligned_cols=88  Identities=17%  Similarity=0.156  Sum_probs=58.8

Q ss_pred             HHhhccCEEEEEEcCCCCCCCcCHHHHHHHh-CCCCEEEEEEcccCCCccc------------------h-------HHH
Q psy15351         10 KHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQ-NIRPMVLVLNKRDLINSKH------------------E-------SLI   63 (352)
Q Consensus        10 ~~i~~aD~vl~VvDar~p~~~~~~~l~~~l~-~~k~~ilVlNK~Dl~~~~~------------------~-------~~~   63 (352)
                      ..+..+|++++|+|+++.+.........++. .+.|+++++||+|+.+...                  .       .+.
T Consensus        90 ~~~~~aD~~IlVvDa~~g~~~qt~e~i~~~~~~~vpiIvviNK~D~~~~~~~~~~~~~~e~~~~~~~~v~~~f~~~l~ev  169 (586)
T PRK04004         90 RGGALADIAILVVDINEGFQPQTIEAINILKRRKTPFVVAANKIDRIPGWKSTEDAPFLESIEKQSQRVQQELEEKLYEL  169 (586)
T ss_pred             HhHhhCCEEEEEEECCCCCCHhHHHHHHHHHHcCCCEEEEEECcCCchhhhhhcCchHHHHHhhhhHHHHHHHHHHHHHH
Confidence            4567899999999999865444433334444 6789999999999863210                  0       011


Q ss_pred             HHHHHhhcCC------------CCcEEEeecCCCCCCCHHHHHHHHHH
Q psy15351         64 EEKVRKEQSH------------ISEVIFTNCRNPNCKGVQKILPTLQH   99 (352)
Q Consensus        64 ~~~~~~~~~~------------~~~v~~iSa~~~~~~gi~~L~~~i~~   99 (352)
                      ..++.+.++.            ..+++++||.++  +|+.+|++.+..
T Consensus       170 ~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tG--eGi~dLl~~i~~  215 (586)
T PRK04004        170 IGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTG--EGIPDLLMVLAG  215 (586)
T ss_pred             HHHHHhcCCChhhhhhhhccCCCceEeeccCCCC--CChHHHHHHHHH
Confidence            2233333321            125899999999  999999888754

>cd04131 Rnd Rnd subfamily

Probab=97.74  E-value=0.00016  Score=61.99  Aligned_cols=85  Identities=15%  Similarity=0.052  Sum_probs=56.2

Q ss_pred             HhhccCEEEEEEcCCCCCCCcC--HHHHHHHh---CCCCEEEEEEcccCCCc--------------cchHHHHHHHHhhc
Q psy15351         11 HLKNVDIVIEVHDSRMPFTGRN--HLLQQSVQ---NIRPMVLVLNKRDLINS--------------KHESLIEEKVRKEQ   71 (352)
Q Consensus        11 ~i~~aD~vl~VvDar~p~~~~~--~~l~~~l~---~~k~~ilVlNK~Dl~~~--------------~~~~~~~~~~~~~~   71 (352)
                      ....+|++|+|.|..++.+..+  ..+...++   ...|+++|.||+||.+.              -..++..++-++.+
T Consensus        69 ~~~~a~~~ilvfdit~~~Sf~~~~~~w~~~i~~~~~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~  148 (178)
T cd04131          69 CYPDSDAVLICFDISRPETLDSVLKKWRGEIQEFCPNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLG  148 (178)
T ss_pred             hcCCCCEEEEEEECCChhhHHHHHHHHHHHHHHHCCCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhC
Confidence            5678999999999987654332  12222222   46799999999999641              01223333333445


Q ss_pred             CCCCcEEEeecCCCCCCC-HHHHHHHHHH
Q psy15351         72 SHISEVIFTNCRNPNCKG-VQKILPTLQH   99 (352)
Q Consensus        72 ~~~~~v~~iSa~~~~~~g-i~~L~~~i~~   99 (352)
                      ..  .++.+||+++  +| +++++..+.+
T Consensus       149 ~~--~~~E~SA~~~--~~~v~~~F~~~~~  173 (178)
T cd04131         149 AE--IYLECSAFTS--EKSVRDIFHVATM  173 (178)
T ss_pred             CC--EEEECccCcC--CcCHHHHHHHHHH
Confidence            32  3789999999  95 9999887765

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd01871 Rac1_like Rac1-like subfamily

Probab=97.73  E-value=7.7e-05  Score=63.68  Aligned_cols=22  Identities=27%  Similarity=0.451  Sum_probs=20.5

Q ss_pred             eEEEEeCCCCCChHHHHHHHhC
Q psy15351        169 TTVMVVGVPNVGKSSIINALRS  190 (352)
Q Consensus       169 ~~v~i~G~pnvGKStliN~l~~  190 (352)
                      ++++++|.+|||||||+.++..
T Consensus         2 ~ki~iiG~~~vGKSsli~~~~~   23 (174)
T cd01871           2 IKCVVVGDGAVGKTCLLISYTT   23 (174)
T ss_pred             eEEEEECCCCCCHHHHHHHHhc
Confidence            6799999999999999999986

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti

>cd04130 Wrch_1 Wrch-1 subfamily

Probab=97.73  E-value=8.9e-05  Score=62.99  Aligned_cols=58  Identities=21%  Similarity=0.177  Sum_probs=35.5

Q ss_pred             eEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeee-eEEecC-CCcEEEEeCCCCCC
Q psy15351        169 TTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMS-QVKISE-KPLIYILDTPGISL  233 (352)
Q Consensus       169 ~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~-~~~~~~-~~~~~l~DtPGi~~  233 (352)
                      ++++++|.+|||||||++++.+..       -....+.|+.+... .+.+.+ ...+.++||||...
T Consensus         1 ~k~~i~G~~~~GKtsl~~~~~~~~-------~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~   60 (173)
T cd04130           1 LKCVLVGDGAVGKTSLIVSYTTNG-------YPTEYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQDE   60 (173)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCC-------CCCCCCCceeeeeeEEEEECCEEEEEEEEECCCChh
Confidence            478999999999999999997521       12223333332211 122221 12578899999743

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,

>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=97.73  E-value=9.5e-05  Score=67.61  Aligned_cols=97  Identities=14%  Similarity=0.212  Sum_probs=66.3

Q ss_pred             HHHHHHhhccCEEEEEEcCCCCCC--CcCHHHH--HHHhCCCCEEEEEEcccCCCccchH----HHHHHHHhhcCCCCcE
Q psy15351          6 KDIEKHLKNVDIVIEVHDSRMPFT--GRNHLLQ--QSVQNIRPMVLVLNKRDLINSKHES----LIEEKVRKEQSHISEV   77 (352)
Q Consensus         6 ~~~~~~i~~aD~vl~VvDar~p~~--~~~~~l~--~~l~~~k~~ilVlNK~Dl~~~~~~~----~~~~~~~~~~~~~~~v   77 (352)
                      ..|..-.+-.|..++|++|..|--  ...+.+.  +++ .-+.+++|=||+||++++...    ++.++++..-..-.++
T Consensus       101 ATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIi-gik~iiIvQNKIDlV~~E~AlE~y~qIk~FvkGt~Ae~aPI  179 (415)
T COG5257         101 ATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEII-GIKNIIIVQNKIDLVSRERALENYEQIKEFVKGTVAENAPI  179 (415)
T ss_pred             HHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhh-ccceEEEEecccceecHHHHHHHHHHHHHHhcccccCCCce
Confidence            345555667799999999986521  1112222  333 568899999999999987532    3333332222223469


Q ss_pred             EEeecCCCCCCCHHHHHHHHHHHhhhcc
Q psy15351         78 IFTNCRNPNCKGVQKILPTLQHISDNMT  105 (352)
Q Consensus        78 ~~iSa~~~~~~gi~~L~~~i~~~~~~~~  105 (352)
                      +++||.++  .|++.|+++|.+.++...
T Consensus       180 IPiSA~~~--~NIDal~e~i~~~IptP~  205 (415)
T COG5257         180 IPISAQHK--ANIDALIEAIEKYIPTPE  205 (415)
T ss_pred             eeehhhhc--cCHHHHHHHHHHhCCCCc
Confidence            99999999  999999999999887543

>cd01885 EF2 EF2 (for archaea and eukarya)

Probab=97.72  E-value=0.00023  Score=63.31  Aligned_cols=52  Identities=19%  Similarity=0.121  Sum_probs=40.4

Q ss_pred             HHHHHHHHhhccCEEEEEEcCCCCCCCcCHHHHHHHh-CCCCEEEEEEcccCC
Q psy15351          4 GLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQ-NIRPMVLVLNKRDLI   55 (352)
Q Consensus         4 ~~~~~~~~i~~aD~vl~VvDar~p~~~~~~~l~~~l~-~~k~~ilVlNK~Dl~   55 (352)
                      ....+...+..+|.+++|+|+..+.......+.+... .+.|+++|+||+|+.
T Consensus        86 f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~l~~~~~~~~p~ilviNKiD~~  138 (222)
T cd01885          86 FSSEVTAALRLCDGALVVVDAVEGVCVQTETVLRQALKERVKPVLVINKIDRL  138 (222)
T ss_pred             cHHHHHHHHHhcCeeEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECCCcc
Confidence            4567788999999999999999876655444444332 578999999999986

Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco

>cd04177 RSR1 RSR1 subgroup

Probab=97.72  E-value=0.00018  Score=60.72  Aligned_cols=86  Identities=19%  Similarity=0.120  Sum_probs=55.6

Q ss_pred             HHhhccCEEEEEEcCCCCCCCcC-HHHHH-HHh----CCCCEEEEEEcccCCCccc--hHHHHHHHHhhcCCCCcEEEee
Q psy15351         10 KHLKNVDIVIEVHDSRMPFTGRN-HLLQQ-SVQ----NIRPMVLVLNKRDLINSKH--ESLIEEKVRKEQSHISEVIFTN   81 (352)
Q Consensus        10 ~~i~~aD~vl~VvDar~p~~~~~-~~l~~-~l~----~~k~~ilVlNK~Dl~~~~~--~~~~~~~~~~~~~~~~~v~~iS   81 (352)
                      ..+..+|.+++|+|..++-+... ..+.. +.+    .+.|+++|.||+|+.+...  .+...+..++.+.  .+++.+|
T Consensus        68 ~~~~~~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~--~~~~~~S  145 (168)
T cd04177          68 LYIKSGQGFLLVYSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQVSREDGVSLSQQWGN--VPFYETS  145 (168)
T ss_pred             HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccCccCHHHHHHHHHHcCC--ceEEEee
Confidence            45678999999999876532211 11111 211    4689999999999976432  1222222223331  1489999


Q ss_pred             cCCCCCCCHHHHHHHHHH
Q psy15351         82 CRNPNCKGVQKILPTLQH   99 (352)
Q Consensus        82 a~~~~~~gi~~L~~~i~~   99 (352)
                      |+++  .|++++++++..
T Consensus       146 A~~~--~~i~~~f~~i~~  161 (168)
T cd04177         146 ARKR--TNVDEVFIDLVR  161 (168)
T ss_pred             CCCC--CCHHHHHHHHHH
Confidence            9999  999999988864

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu

>cd04126 Rab20 Rab20 subfamily

Probab=97.70  E-value=0.00011  Score=65.36  Aligned_cols=56  Identities=25%  Similarity=0.247  Sum_probs=34.2

Q ss_pred             eEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCCcEEEEeCCCCCC
Q psy15351        169 TTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISL  233 (352)
Q Consensus       169 ~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~~  233 (352)
                      ++|+++|.+|||||||++++.....     ....++.|..  .  .......-.+.++||||-..
T Consensus         1 ~KIvivG~~~vGKTSLi~r~~~~~f-----~~~~~Tig~~--~--~~~~~~~~~l~iwDt~G~e~   56 (220)
T cd04126           1 LKVVLLGDMNVGKTSLLHRYMERRF-----KDTVSTVGGA--F--YLKQWGPYNISIWDTAGREQ   56 (220)
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCC-----CCCCCccceE--E--EEEEeeEEEEEEEeCCCccc
Confidence            4799999999999999999986322     1111111111  1  11111222588999999753

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo

>cd01874 Cdc42 Cdc42 subfamily

Probab=97.70  E-value=0.00011  Score=62.80  Aligned_cols=22  Identities=27%  Similarity=0.451  Sum_probs=20.7

Q ss_pred             eEEEEeCCCCCChHHHHHHHhC
Q psy15351        169 TTVMVVGVPNVGKSSIINALRS  190 (352)
Q Consensus       169 ~~v~i~G~pnvGKStliN~l~~  190 (352)
                      ++|+++|.+|||||||++++..
T Consensus         2 ~ki~vvG~~~vGKTsl~~~~~~   23 (175)
T cd01874           2 IKCVVVGDGAVGKTCLLISYTT   23 (175)
T ss_pred             eEEEEECCCCCCHHHHHHHHHc
Confidence            6799999999999999999986

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi

>cd04147 Ras_dva Ras-dva subfamily

Probab=97.69  E-value=6.2e-05  Score=65.61  Aligned_cols=57  Identities=18%  Similarity=0.191  Sum_probs=34.2

Q ss_pred             EEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCC--CcEEEEeCCCCCC
Q psy15351        170 TVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEK--PLIYILDTPGISL  233 (352)
Q Consensus       170 ~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~--~~~~l~DtPGi~~  233 (352)
                      +|+++|.+|||||||++++.+...       ....+.++...........+  -.+.++||||...
T Consensus         1 kv~vvG~~~vGKTsll~~~~~~~~-------~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~   59 (198)
T cd04147           1 RLVFMGAAGVGKTALIQRFLYDTF-------EPKYRRTVEEMHRKEYEVGGVSLTLDILDTSGSYS   59 (198)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCC-------CccCCCchhhheeEEEEECCEEEEEEEEECCCchh
Confidence            489999999999999999986321       11122222221111111122  2578999999654

Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>COG2229 Predicted GTPase [General function prediction only]

Probab=97.69  E-value=0.0005  Score=58.09  Aligned_cols=86  Identities=22%  Similarity=0.220  Sum_probs=66.7

Q ss_pred             HHhhccCEEEEEEcCCCCCCCcCHHHHHHHh-CC-CCEEEEEEcccCCCccchHHHHHHHHhh--cCCCCcEEEeecCCC
Q psy15351         10 KHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQ-NI-RPMVLVLNKRDLINSKHESLIEEKVRKE--QSHISEVIFTNCRNP   85 (352)
Q Consensus        10 ~~i~~aD~vl~VvDar~p~~~~~~~l~~~l~-~~-k~~ilVlNK~Dl~~~~~~~~~~~~~~~~--~~~~~~v~~iSa~~~   85 (352)
                      -..+.++-+++++|++.|.......+.+++. .. .|+++.+||.||.+....+.+.+++...  ..   +++.++|.++
T Consensus        87 ~l~~ga~gaivlVDss~~~~~~a~~ii~f~~~~~~ip~vVa~NK~DL~~a~ppe~i~e~l~~~~~~~---~vi~~~a~e~  163 (187)
T COG2229          87 ILSRGAVGAIVLVDSSRPITFHAEEIIDFLTSRNPIPVVVAINKQDLFDALPPEKIREALKLELLSV---PVIEIDATEG  163 (187)
T ss_pred             HHhCCcceEEEEEecCCCcchHHHHHHHHHhhccCCCEEEEeeccccCCCCCHHHHHHHHHhccCCC---ceeeeecccc
Confidence            4567899999999999988775566666665 34 7999999999998876666676776544  34   4999999999


Q ss_pred             CCCCHHHHHHHHHHH
Q psy15351         86 NCKGVQKILPTLQHI  100 (352)
Q Consensus        86 ~~~gi~~L~~~i~~~  100 (352)
                        +|..+.+..+...
T Consensus       164 --~~~~~~L~~ll~~  176 (187)
T COG2229         164 --EGARDQLDVLLLK  176 (187)
T ss_pred             --hhHHHHHHHHHhh
Confidence              9988877776543

>PLN03126 Elongation factor Tu; Provisional

Probab=97.69  E-value=7e-05  Score=74.02  Aligned_cols=69  Identities=20%  Similarity=0.231  Sum_probs=46.5

Q ss_pred             cCcceEEEEeCCCCCChHHHHHHHhCCC--CCCC--------CceecCCCCCceeEeeeeEEecCCCcEEEEeCCCCCC
Q psy15351        165 EVYNTTVMVVGVPNVGKSSIINALRSSH--MKKG--------KAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISL  233 (352)
Q Consensus       165 ~~~~~~v~i~G~pnvGKStliN~l~~~~--~~~~--------~~~~~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~~  233 (352)
                      .++.++++++|.+++|||||+++|+...  +...        ....-....|.|.+.........+..+.|+||||...
T Consensus        78 ~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~  156 (478)
T PLN03126         78 KKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHAD  156 (478)
T ss_pred             cCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHH
Confidence            3567999999999999999999998521  0000        0012234578888765433334566899999999643

>PTZ00141 elongation factor 1- alpha; Provisional

Probab=97.69  E-value=0.00023  Score=69.92  Aligned_cols=97  Identities=15%  Similarity=0.077  Sum_probs=62.7

Q ss_pred             hhHHHHHHHHhhccCEEEEEEcCCCCCC-------CcCHHHHHHHh-CCCC-EEEEEEcccCC--C--ccch----HHHH
Q psy15351          2 GRGLKDIEKHLKNVDIVIEVHDSRMPFT-------GRNHLLQQSVQ-NIRP-MVLVLNKRDLI--N--SKHE----SLIE   64 (352)
Q Consensus         2 ~~~~~~~~~~i~~aD~vl~VvDar~p~~-------~~~~~l~~~l~-~~k~-~ilVlNK~Dl~--~--~~~~----~~~~   64 (352)
                      .+.++++...+..+|++++|+|+..+..       ....+...++. .+.| +++++||+|..  +  ++..    ++..
T Consensus        96 ~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~gi~~iiv~vNKmD~~~~~~~~~~~~~i~~~i~  175 (446)
T PTZ00141         96 RDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFTLGVKQMIVCINKMDDKTVNYSQERYDEIKKEVS  175 (446)
T ss_pred             HHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHcCCCeEEEEEEccccccchhhHHHHHHHHHHHH
Confidence            3567888899999999999999997652       22223333333 4655 57899999943  2  2222    3333


Q ss_pred             HHHHhhcCC--CCcEEEeecCCCCCCCHHH------------HHHHHHHH
Q psy15351         65 EKVRKEQSH--ISEVIFTNCRNPNCKGVQK------------ILPTLQHI  100 (352)
Q Consensus        65 ~~~~~~~~~--~~~v~~iSa~~~~~~gi~~------------L~~~i~~~  100 (352)
                      +.+...++.  ..+++++|+.++  +|+.+            |++.|.++
T Consensus       176 ~~l~~~g~~~~~~~~ipiSa~~g--~ni~~~~~~~~Wy~G~tL~~~l~~~  223 (446)
T PTZ00141        176 AYLKKVGYNPEKVPFIPISGWQG--DNMIEKSDNMPWYKGPTLLEALDTL  223 (446)
T ss_pred             HHHHhcCCCcccceEEEeecccC--CCcccCCCCCcccchHHHHHHHhCC
Confidence            444444432  135899999999  88853            67776554

>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2

Probab=97.68  E-value=7.6e-05  Score=75.48  Aligned_cols=23  Identities=26%  Similarity=0.562  Sum_probs=21.2

Q ss_pred             ceEEEEeCCCCCChHHHHHHHhC
Q psy15351        168 NTTVMVVGVPNVGKSSIINALRS  190 (352)
Q Consensus       168 ~~~v~i~G~pnvGKStliN~l~~  190 (352)
                      ...|+++|.+|+|||||+|+|++
T Consensus         4 ~piV~IiG~~d~GKTSLln~l~~   26 (590)
T TIGR00491         4 SPIVSVLGHVDHGKTTLLDKIRG   26 (590)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhc
Confidence            45799999999999999999996

This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.

>cd04167 Snu114p Snu114p subfamily

Probab=97.67  E-value=0.00026  Score=62.55  Aligned_cols=52  Identities=27%  Similarity=0.259  Sum_probs=38.6

Q ss_pred             HHHHHHHHhhccCEEEEEEcCCCCCCCcCHHHHHHHh-CCCCEEEEEEcccCC
Q psy15351          4 GLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQ-NIRPMVLVLNKRDLI   55 (352)
Q Consensus         4 ~~~~~~~~i~~aD~vl~VvDar~p~~~~~~~l~~~l~-~~k~~ilVlNK~Dl~   55 (352)
                      ....+...+..+|++++|+|+..+.......+.+... .++|+++|+||+|++
T Consensus        84 f~~~~~~~~~~aD~~llVvD~~~~~~~~~~~~~~~~~~~~~p~iiviNK~D~~  136 (213)
T cd04167          84 FMDEVAAALRLSDGVVLVVDVVEGVTSNTERLIRHAILEGLPIVLVINKIDRL  136 (213)
T ss_pred             hHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECcccC
Confidence            3456677889999999999998766543333333332 568999999999986

Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.

>cd04103 Centaurin_gamma Centaurin gamma

Probab=97.66  E-value=0.00022  Score=59.91  Aligned_cols=84  Identities=14%  Similarity=0.078  Sum_probs=54.5

Q ss_pred             HhhccCEEEEEEcCCCCCCCcC-HHHH-HHHh----CCCCEEEEEEcccCCC--ccc-hHHHHHHHH-hh-cCCCCcEEE
Q psy15351         11 HLKNVDIVIEVHDSRMPFTGRN-HLLQ-QSVQ----NIRPMVLVLNKRDLIN--SKH-ESLIEEKVR-KE-QSHISEVIF   79 (352)
Q Consensus        11 ~i~~aD~vl~VvDar~p~~~~~-~~l~-~~l~----~~k~~ilVlNK~Dl~~--~~~-~~~~~~~~~-~~-~~~~~~v~~   79 (352)
                      ....+|++++|.|..++-+..+ ..+. ++..    .+.|+++|.||.||..  +.. ..+..+.+. +. ...   ++.
T Consensus        62 ~~~~~~~~ilv~d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~~~~~~~---~~e  138 (158)
T cd04103          62 FASWVDAVIFVFSLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESNPRVIDDARARQLCADMKRCS---YYE  138 (158)
T ss_pred             HHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcCCcccCHHHHHHHHHHhCCCc---EEE
Confidence            4578999999999987654433 1222 2222    3469999999999853  221 122222232 22 244   889


Q ss_pred             eecCCCCCCCHHHHHHHHHH
Q psy15351         80 TNCRNPNCKGVQKILPTLQH   99 (352)
Q Consensus        80 iSa~~~~~~gi~~L~~~i~~   99 (352)
                      +||+++  .|+++++..+.+
T Consensus       139 ~SAk~~--~~i~~~f~~~~~  156 (158)
T cd04103         139 TCATYG--LNVERVFQEAAQ  156 (158)
T ss_pred             EecCCC--CCHHHHHHHHHh
Confidence            999999  999999987753

The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.

>cd00882 Ras_like_GTPase Ras-like GTPase superfamily

Probab=97.65  E-value=4.7e-05  Score=61.67  Aligned_cols=55  Identities=29%  Similarity=0.360  Sum_probs=31.6

Q ss_pred             EeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCcee-Eeeee-EEe-cCCCcEEEEeCCCCCCC
Q psy15351        173 VVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTR-SVMSQ-VKI-SEKPLIYILDTPGISLP  234 (352)
Q Consensus       173 i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~-~~~~~-~~~-~~~~~~~l~DtPGi~~~  234 (352)
                      ++|.+|+|||||+|++.+....      . .....|. +.... ... .....+.++||||....
T Consensus         1 iiG~~~~GKStl~~~l~~~~~~------~-~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~   58 (157)
T cd00882           1 VVGDSGVGKTSLLNRLLGGEFV------P-EEYETTIIDFYSKTIEVDGKKVKLQIWDTAGQERF   58 (157)
T ss_pred             CCCcCCCcHHHHHHHHHhCCcC------C-cccccchhheeeEEEEECCEEEEEEEEecCChHHH
Confidence            5799999999999999963210      1 1111121 11111 111 11336899999997653

The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb

>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily

Probab=97.65  E-value=0.00028  Score=60.14  Aligned_cols=89  Identities=17%  Similarity=0.121  Sum_probs=58.1

Q ss_pred             HHhhccCEEEEEEcCCCCCCCc--CHHHHHHHh----CCCCEEEEEEcccCCCccc--hHHHHHHHHhhcCCCCcEEEee
Q psy15351         10 KHLKNVDIVIEVHDSRMPFTGR--NHLLQQSVQ----NIRPMVLVLNKRDLINSKH--ESLIEEKVRKEQSHISEVIFTN   81 (352)
Q Consensus        10 ~~i~~aD~vl~VvDar~p~~~~--~~~l~~~l~----~~k~~ilVlNK~Dl~~~~~--~~~~~~~~~~~~~~~~~v~~iS   81 (352)
                      .....+|.+++|+|..+..+..  ...+..+++    .+.|+++|+||+|+.....  ...+....+..+.   +++.+|
T Consensus        68 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~---~~~~~S  144 (180)
T cd04137          68 KYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQVSTEEGKELAESWGA---AFLESS  144 (180)
T ss_pred             HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCccCHHHHHHHHHHcCC---eEEEEe
Confidence            4567899999999987642111  111122222    3579999999999975332  2223333333344   489999


Q ss_pred             cCCCCCCCHHHHHHHHHHHhhh
Q psy15351         82 CRNPNCKGVQKILPTLQHISDN  103 (352)
Q Consensus        82 a~~~~~~gi~~L~~~i~~~~~~  103 (352)
                      |+++  .|+.+++.++.+.+..
T Consensus       145 a~~~--~gv~~l~~~l~~~~~~  164 (180)
T cd04137         145 AREN--ENVEEAFELLIEEIEK  164 (180)
T ss_pred             CCCC--CCHHHHHHHHHHHHHH
Confidence            9999  9999999999876654

Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le

>cd04134 Rho3 Rho3 subfamily

Probab=97.65  E-value=0.00012  Score=63.27  Aligned_cols=21  Identities=33%  Similarity=0.583  Sum_probs=19.9

Q ss_pred             EEEEeCCCCCChHHHHHHHhC
Q psy15351        170 TVMVVGVPNVGKSSIINALRS  190 (352)
Q Consensus       170 ~v~i~G~pnvGKStliN~l~~  190 (352)
                      +|+++|.+|||||||++++.+
T Consensus         2 kivivG~~~vGKTsli~~~~~   22 (189)
T cd04134           2 KVVVLGDGACGKTSLLNVFTR   22 (189)
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            689999999999999999986

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>cd04131 Rnd Rnd subfamily

Probab=97.64  E-value=0.00015  Score=62.19  Aligned_cols=22  Identities=23%  Similarity=0.516  Sum_probs=20.6

Q ss_pred             eEEEEeCCCCCChHHHHHHHhC
Q psy15351        169 TTVMVVGVPNVGKSSIINALRS  190 (352)
Q Consensus       169 ~~v~i~G~pnvGKStliN~l~~  190 (352)
                      ++|+++|.+|||||||++++.+
T Consensus         2 ~Kiv~vG~~~vGKTsli~~~~~   23 (178)
T cd04131           2 CKIVVVGDVQCGKTALLQVFAK   23 (178)
T ss_pred             eEEEEECCCCCCHHHHHHHHHh
Confidence            5799999999999999999986

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd01886 EF-G Elongation factor G (EF-G) subfamily

Probab=97.63  E-value=0.00018  Score=65.91  Aligned_cols=81  Identities=14%  Similarity=0.163  Sum_probs=54.8

Q ss_pred             HHHHHHHHhhccCEEEEEEcCCCCCCCcCHHHHHHHh-CCCCEEEEEEcccCCCccchHHHHHHHHhh-cC-CCCcEEEe
Q psy15351          4 GLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQ-NIRPMVLVLNKRDLINSKHESLIEEKVRKE-QS-HISEVIFT   80 (352)
Q Consensus         4 ~~~~~~~~i~~aD~vl~VvDar~p~~~~~~~l~~~l~-~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~-~~-~~~~v~~i   80 (352)
                      ...++...+..+|++++|+|+..........+.+.+. .++|+++++||+|+...+. +...+.+++. +. .+..++++
T Consensus        77 f~~~~~~~l~~aD~ailVVDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~~a~~-~~~~~~l~~~l~~~~~~~~~Pi  155 (270)
T cd01886          77 FTIEVERSLRVLDGAVAVFDAVAGVEPQTETVWRQADRYNVPRIAFVNKMDRTGADF-FRVVEQIREKLGANPVPLQLPI  155 (270)
T ss_pred             HHHHHHHHHHHcCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECCCCCCCCH-HHHHHHHHHHhCCCceEEEecc
Confidence            3456788999999999999999877655555555554 6889999999999975432 2333333322 21 22246788


Q ss_pred             ecCCC
Q psy15351         81 NCRNP   85 (352)
Q Consensus        81 Sa~~~   85 (352)
                      |+..+
T Consensus       156 sa~~~  160 (270)
T cd01886         156 GEEDD  160 (270)
T ss_pred             ccCCC
Confidence            88654

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta

>cd04104 p47_IIGP_like p47 (47-kDa) family

Probab=97.63  E-value=0.00035  Score=60.89  Aligned_cols=89  Identities=15%  Similarity=0.134  Sum_probs=60.3

Q ss_pred             hhccCEEEEEEcCCCCCCCcCHHHHHHHh-CCCCEEEEEEcccCCCccc---------hHHHHHH--------HHhhcCC
Q psy15351         12 LKNVDIVIEVHDSRMPFTGRNHLLQQSVQ-NIRPMVLVLNKRDLINSKH---------ESLIEEK--------VRKEQSH   73 (352)
Q Consensus        12 i~~aD~vl~VvDar~p~~~~~~~l~~~l~-~~k~~ilVlNK~Dl~~~~~---------~~~~~~~--------~~~~~~~   73 (352)
                      +..+|++++|.|.  +++..+..+.+.++ .++|+++|+||+|+..+..         .++.++.        +...+..
T Consensus        78 ~~~~d~~l~v~~~--~~~~~d~~~~~~l~~~~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~  155 (197)
T cd04104          78 FSEYDFFIIISST--RFSSNDVKLAKAIQCMGKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENLQEAGVS  155 (197)
T ss_pred             ccCcCEEEEEeCC--CCCHHHHHHHHHHHHhCCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHHHHHcCCC
Confidence            5678999998654  35555666666555 5789999999999964321         1222222        2222334


Q ss_pred             CCcEEEeecC--CCCCCCHHHHHHHHHHHhhhc
Q psy15351         74 ISEVIFTNCR--NPNCKGVQKILPTLQHISDNM  104 (352)
Q Consensus        74 ~~~v~~iSa~--~~~~~gi~~L~~~i~~~~~~~  104 (352)
                      ..+|+.+|+.  .+  .++..|.+.+...+++.
T Consensus       156 ~p~v~~vS~~~~~~--~~~~~l~~~~~~~l~~~  186 (197)
T cd04104         156 EPPVFLVSNFDPSD--YDFPKLRETLLKDLPAH  186 (197)
T ss_pred             CCCEEEEeCCChhh--cChHHHHHHHHHHhhHH
Confidence            4479999998  45  89999999998877754

The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei

>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily

Probab=97.62  E-value=0.00013  Score=61.49  Aligned_cols=55  Identities=22%  Similarity=0.477  Sum_probs=34.5

Q ss_pred             EEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCCcEEEEeCCCCCC
Q psy15351        171 VMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISL  233 (352)
Q Consensus       171 v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~~  233 (352)
                      |+++|.+|||||||++++.+...    .....++.|...  . .+. ..+..+.++||||-..
T Consensus         2 i~ivG~~~vGKTsli~~~~~~~~----~~~~~pt~g~~~--~-~i~-~~~~~l~i~Dt~G~~~   56 (164)
T cd04162           2 ILVLGLDGAGKTSLLHSLSSERS----LESVVPTTGFNS--V-AIP-TQDAIMELLEIGGSQN   56 (164)
T ss_pred             EEEECCCCCCHHHHHHHHhcCCC----cccccccCCcce--E-EEe-eCCeEEEEEECCCCcc
Confidence            78999999999999999986321    112222333221  1 111 2234689999999653

Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.

>smart00053 DYNc Dynamin, GTPase

Probab=97.62  E-value=0.00013  Score=65.41  Aligned_cols=25  Identities=28%  Similarity=0.424  Sum_probs=22.2

Q ss_pred             ceEEEEeCCCCCChHHHHHHHhCCC
Q psy15351        168 NTTVMVVGVPNVGKSSIINALRSSH  192 (352)
Q Consensus       168 ~~~v~i~G~pnvGKStliN~l~~~~  192 (352)
                      ...++++|..|+||||++++|.+..
T Consensus        26 ~p~i~vvG~~~~GKSt~l~~i~g~~   50 (240)
T smart00053       26 LPQIAVVGGQSAGKSSVLENFVGRD   50 (240)
T ss_pred             CCeEEEEcCCCccHHHHHHHHhCCC
Confidence            4579999999999999999999853

Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.

>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins

Probab=97.61  E-value=0.00024  Score=63.68  Aligned_cols=50  Identities=18%  Similarity=0.257  Sum_probs=38.2

Q ss_pred             CCEEEEEEcccCCCccchHHHHHHHHhhcCCCCcEEEeecCCCCCCCHHHHHHHHHHHhh
Q psy15351         43 RPMVLVLNKRDLINSKHESLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISD  102 (352)
Q Consensus        43 k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~v~~iSa~~~~~~gi~~L~~~i~~~~~  102 (352)
                      .|+++|+||+|+++.+....    +.+ ..   +++++||+++  .|++++++.+.+.+.
T Consensus       177 ~p~iiV~NK~Dl~~~~~~~~----~~~-~~---~~~~~SA~~g--~gi~~l~~~i~~~L~  226 (233)
T cd01896         177 IPCLYVYNKIDLISIEELDL----LAR-QP---NSVVISAEKG--LNLDELKERIWDKLG  226 (233)
T ss_pred             eeEEEEEECccCCCHHHHHH----Hhc-CC---CEEEEcCCCC--CCHHHHHHHHHHHhC
Confidence            58999999999987654332    222 22   3889999999  999999999877554

GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.

>KOG0078|consensus

Probab=97.60  E-value=0.00058  Score=58.93  Aligned_cols=94  Identities=15%  Similarity=0.017  Sum_probs=66.4

Q ss_pred             hHHHHHHHHhhccCEEEEEEcCCCCCCCcCH-HHHHHHh----CCCCEEEEEEcccCCCccc--hHHHHHHHHhhcCCCC
Q psy15351          3 RGLKDIEKHLKNVDIVIEVHDSRMPFTGRNH-LLQQSVQ----NIRPMVLVLNKRDLINSKH--ESLIEEKVRKEQSHIS   75 (352)
Q Consensus         3 ~~~~~~~~~i~~aD~vl~VvDar~p~~~~~~-~l~~~l~----~~k~~ilVlNK~Dl~~~~~--~~~~~~~~~~~~~~~~   75 (352)
                      ++-.-+..+...|+.+++|.|..+..+..+. .+.+.++    .+.|.++|-||+|+..+..  .+.-.++..+.|..  
T Consensus        73 rf~ti~~sYyrgA~gi~LvyDitne~Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D~~~~R~V~~e~ge~lA~e~G~~--  150 (207)
T KOG0078|consen   73 RFRTITTAYYRGAMGILLVYDITNEKSFENIRNWIKNIDEHASDDVVKILVGNKCDLEEKRQVSKERGEALAREYGIK--  150 (207)
T ss_pred             hHHHHHHHHHhhcCeeEEEEEccchHHHHHHHHHHHHHHhhCCCCCcEEEeeccccccccccccHHHHHHHHHHhCCe--
Confidence            4445567788999999999999876544331 1223333    3678999999999987443  23444444566877  


Q ss_pred             cEEEeecCCCCCCCHHHHHHHHHHHh
Q psy15351         76 EVIFTNCRNPNCKGVQKILPTLQHIS  101 (352)
Q Consensus        76 ~v~~iSa~~~~~~gi~~L~~~i~~~~  101 (352)
                       ++.+||+++  .|+.+.+-.+...+
T Consensus       151 -F~EtSAk~~--~NI~eaF~~La~~i  173 (207)
T KOG0078|consen  151 -FFETSAKTN--FNIEEAFLSLARDI  173 (207)
T ss_pred             -EEEccccCC--CCHHHHHHHHHHHH
Confidence             899999999  99998876665443

>cd04129 Rho2 Rho2 subfamily

Probab=97.59  E-value=0.0003  Score=60.65  Aligned_cols=87  Identities=13%  Similarity=0.128  Sum_probs=55.6

Q ss_pred             HhhccCEEEEEEcCCCCCCCcC--HHHHHHHh---CCCCEEEEEEcccCCCccc------------hHHHHHHHHhhcCC
Q psy15351         11 HLKNVDIVIEVHDSRMPFTGRN--HLLQQSVQ---NIRPMVLVLNKRDLINSKH------------ESLIEEKVRKEQSH   73 (352)
Q Consensus        11 ~i~~aD~vl~VvDar~p~~~~~--~~l~~~l~---~~k~~ilVlNK~Dl~~~~~------------~~~~~~~~~~~~~~   73 (352)
                      .+..+|+++++.|..++-+...  ..+...++   ...|+++|.||+|+.+...            ......+.++.+..
T Consensus        69 ~~~~a~~~llv~~i~~~~s~~~~~~~~~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (187)
T cd04129          69 SYSKAHVILIGFAVDTPDSLENVRTKWIEEVRRYCPNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAK  148 (187)
T ss_pred             hcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhCCc
Confidence            4578999999999876532211  11222222   4689999999999864211            11222222233432


Q ss_pred             CCcEEEeecCCCCCCCHHHHHHHHHHHh
Q psy15351         74 ISEVIFTNCRNPNCKGVQKILPTLQHIS  101 (352)
Q Consensus        74 ~~~v~~iSa~~~~~~gi~~L~~~i~~~~  101 (352)
                        +++.+||+++  .|++++++.+.+.+
T Consensus       149 --~~~e~Sa~~~--~~v~~~f~~l~~~~  172 (187)
T cd04129         149 --KYMECSALTG--EGVDDVFEAATRAA  172 (187)
T ss_pred             --EEEEccCCCC--CCHHHHHHHHHHHH
Confidence              4889999999  99999999987544

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).

>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways

Probab=97.59  E-value=9.4e-05  Score=60.64  Aligned_cols=22  Identities=27%  Similarity=0.598  Sum_probs=20.4

Q ss_pred             eEEEEeCCCCCChHHHHHHHhC
Q psy15351        169 TTVMVVGVPNVGKSSIINALRS  190 (352)
Q Consensus       169 ~~v~i~G~pnvGKStliN~l~~  190 (352)
                      .+|+++|.+++|||||+++|.+
T Consensus         2 krimliG~~g~GKTTL~q~L~~   23 (143)
T PF10662_consen    2 KRIMLIGPSGSGKTTLAQALNG   23 (143)
T ss_pred             ceEEEECCCCCCHHHHHHHHcC
Confidence            3699999999999999999986

Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process

>PTZ00132 GTP-binding nuclear protein Ran; Provisional

Probab=97.59  E-value=0.00018  Score=63.59  Aligned_cols=62  Identities=19%  Similarity=0.216  Sum_probs=36.6

Q ss_pred             CcceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEec-CCCcEEEEeCCCCC
Q psy15351        166 VYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKIS-EKPLIYILDTPGIS  232 (352)
Q Consensus       166 ~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~-~~~~~~l~DtPGi~  232 (352)
                      ...++++++|.+|||||||++.+...    .......++.|....... +... ..-.+.++||||-.
T Consensus         7 ~~~~kv~liG~~g~GKTtLi~~~~~~----~~~~~~~~t~~~~~~~~~-~~~~~~~i~i~~~Dt~g~~   69 (215)
T PTZ00132          7 VPEFKLILVGDGGVGKTTFVKRHLTG----EFEKKYIPTLGVEVHPLK-FYTNCGPICFNVWDTAGQE   69 (215)
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHhC----CCCCCCCCccceEEEEEE-EEECCeEEEEEEEECCCch
Confidence            35689999999999999999866531    111222333443332211 1111 11257889999954

>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta)

Probab=97.58  E-value=0.00015  Score=63.53  Aligned_cols=56  Identities=20%  Similarity=0.373  Sum_probs=34.4

Q ss_pred             EEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEe---cCCCcEEEEeCCCCCC
Q psy15351        170 TVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKI---SEKPLIYILDTPGISL  233 (352)
Q Consensus       170 ~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~---~~~~~~~l~DtPGi~~  233 (352)
                      +|+++|.+|||||||++.|...     ....+  .+.++.... .+..   ..+..+.++||||...
T Consensus         2 ~vll~G~~~sGKTsL~~~l~~~-----~~~~t--~~s~~~~~~-~~~~~~~~~~~~~~l~D~pG~~~   60 (203)
T cd04105           2 TVLLLGPSDSGKTALFTKLTTG-----KYRST--VTSIEPNVA-TFILNSEGKGKKFRLVDVPGHPK   60 (203)
T ss_pred             eEEEEcCCCCCHHHHHHHHhcC-----CCCCc--cCcEeecce-EEEeecCCCCceEEEEECCCCHH
Confidence            5899999999999999999862     11111  121221111 1111   1234689999999764

SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ

>PRK12739 elongation factor G; Reviewed

Probab=97.56  E-value=0.00053  Score=71.25  Aligned_cols=54  Identities=19%  Similarity=0.230  Sum_probs=43.8

Q ss_pred             HHHHHHHHhhccCEEEEEEcCCCCCCCcCHHHHHHHh-CCCCEEEEEEcccCCCc
Q psy15351          4 GLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQ-NIRPMVLVLNKRDLINS   57 (352)
Q Consensus         4 ~~~~~~~~i~~aD~vl~VvDar~p~~~~~~~l~~~l~-~~k~~ilVlNK~Dl~~~   57 (352)
                      ...++...+..+|++++|+|+..+.......+..++. .++|+++++||+|+.+.
T Consensus        86 f~~e~~~al~~~D~~ilVvDa~~g~~~qt~~i~~~~~~~~~p~iv~iNK~D~~~~  140 (691)
T PRK12739         86 FTIEVERSLRVLDGAVAVFDAVSGVEPQSETVWRQADKYGVPRIVFVNKMDRIGA  140 (691)
T ss_pred             HHHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECCCCCCC
Confidence            3456788999999999999999887666666665554 68999999999999854

>cd04143 Rhes_like Rhes_like subfamily

Probab=97.55  E-value=0.00015  Score=65.69  Aligned_cols=58  Identities=21%  Similarity=0.279  Sum_probs=34.8

Q ss_pred             eEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeee-eEEecCC-CcEEEEeCCCCCC
Q psy15351        169 TTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMS-QVKISEK-PLIYILDTPGISL  233 (352)
Q Consensus       169 ~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~-~~~~~~~-~~~~l~DtPGi~~  233 (352)
                      ++|+++|.+|||||||++++.+...      . .....|+.+... .+.+.+. -.+.++||+|...
T Consensus         1 ~KVvvlG~~gvGKTSLi~r~~~~~f------~-~~y~pTi~d~~~k~~~i~~~~~~l~I~Dt~G~~~   60 (247)
T cd04143           1 YRMVVLGASKVGKTAIVSRFLGGRF------E-EQYTPTIEDFHRKLYSIRGEVYQLDILDTSGNHP   60 (247)
T ss_pred             CEEEEECcCCCCHHHHHHHHHcCCC------C-CCCCCChhHhEEEEEEECCEEEEEEEEECCCChh
Confidence            3699999999999999999985211      1 122223222211 2222221 1467999999653

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l

>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional

Probab=97.55  E-value=0.00012  Score=72.51  Aligned_cols=66  Identities=24%  Similarity=0.266  Sum_probs=42.2

Q ss_pred             CcceEEEEeCCCCCChHHHHHHHhCCC--CCCCC----------cee---------------cCCCCCceeEeeeeEEec
Q psy15351        166 VYNTTVMVVGVPNVGKSSIINALRSSH--MKKGK----------AVP---------------VGPKAGVTRSVMSQVKIS  218 (352)
Q Consensus       166 ~~~~~v~i~G~pnvGKStliN~l~~~~--~~~~~----------~~~---------------~~~~pg~T~~~~~~~~~~  218 (352)
                      ...++++++|.+++|||||+++|+...  +..+.          ...               .....|.|.+........
T Consensus        25 ~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~~  104 (474)
T PRK05124         25 KSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFST  104 (474)
T ss_pred             cCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEecc
Confidence            567999999999999999999997531  00000          000               011345666654333334


Q ss_pred             CCCcEEEEeCCCC
Q psy15351        219 EKPLIYILDTPGI  231 (352)
Q Consensus       219 ~~~~~~l~DtPGi  231 (352)
                      .+.++.|+||||.
T Consensus       105 ~~~~i~~iDTPGh  117 (474)
T PRK05124        105 EKRKFIIADTPGH  117 (474)
T ss_pred             CCcEEEEEECCCc
Confidence            5568999999994

>cd01892 Miro2 Miro2 subfamily

Probab=97.55  E-value=0.00024  Score=60.25  Aligned_cols=61  Identities=11%  Similarity=0.184  Sum_probs=36.7

Q ss_pred             cceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeE-ee-eeEEecCC-CcEEEEeCCCCCC
Q psy15351        167 YNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRS-VM-SQVKISEK-PLIYILDTPGISL  233 (352)
Q Consensus       167 ~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~-~~-~~~~~~~~-~~~~l~DtPGi~~  233 (352)
                      +.++|+++|.+|||||||++++.+.     .. .+....+|+.. .. ..+...+. ..+.++||+|-..
T Consensus         3 ~~~kv~~vG~~~vGKTsli~~~~~~-----~f-~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~   66 (169)
T cd01892           3 NVFLCFVLGAKGSGKSALLRAFLGR-----SF-SLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEV   66 (169)
T ss_pred             eEEEEEEECCCCCcHHHHHHHHhCC-----CC-CcccCCCccCcceEEEEEEECCeEEEEEEEecCCccc
Confidence            4588999999999999999999863     11 11222333221 11 12222221 2467889998654

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>TIGR00503 prfC peptide chain release factor 3

Probab=97.54  E-value=0.0002  Score=71.66  Aligned_cols=66  Identities=20%  Similarity=0.286  Sum_probs=38.8

Q ss_pred             cceEEEEeCCCCCChHHHHHHHhCC--CCCCCCc--------eecC------CCCCceeEeeeeEEecCCCcEEEEeCCC
Q psy15351        167 YNTTVMVVGVPNVGKSSIINALRSS--HMKKGKA--------VPVG------PKAGVTRSVMSQVKISEKPLIYILDTPG  230 (352)
Q Consensus       167 ~~~~v~i~G~pnvGKStliN~l~~~--~~~~~~~--------~~~~------~~pg~T~~~~~~~~~~~~~~~~l~DtPG  230 (352)
                      +..+++++|.+++|||||+++|...  .+.....        ..++      ...|.|...........+..+.++||||
T Consensus        10 ~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTPG   89 (527)
T TIGR00503        10 KRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTPG   89 (527)
T ss_pred             cCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECCC
Confidence            4568999999999999999998631  1110000        0011      1224443332222233456789999999


Q ss_pred             CC
Q psy15351        231 IS  232 (352)
Q Consensus       231 i~  232 (352)
                      ..
T Consensus        90 ~~   91 (527)
T TIGR00503        90 HE   91 (527)
T ss_pred             hh
Confidence            85

This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.

>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily

Probab=97.54  E-value=0.0001  Score=65.50  Aligned_cols=63  Identities=29%  Similarity=0.290  Sum_probs=43.2

Q ss_pred             EEEEeCCCCCChHHHHHHHhCCC--CCC--------------C---------CceecCCCCCceeEeeeeEEecCCCcEE
Q psy15351        170 TVMVVGVPNVGKSSIINALRSSH--MKK--------------G---------KAVPVGPKAGVTRSVMSQVKISEKPLIY  224 (352)
Q Consensus       170 ~v~i~G~pnvGKStliN~l~~~~--~~~--------------~---------~~~~~~~~pg~T~~~~~~~~~~~~~~~~  224 (352)
                      +|+++|.+++|||||+.+|....  +..              .         .........|+|++.........+..+.
T Consensus         1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~   80 (219)
T cd01883           1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT   80 (219)
T ss_pred             CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence            48999999999999999996320  000              0         0111223678898876655545667899


Q ss_pred             EEeCCCCC
Q psy15351        225 ILDTPGIS  232 (352)
Q Consensus       225 l~DtPGi~  232 (352)
                      ++||||..
T Consensus        81 liDtpG~~   88 (219)
T cd01883          81 ILDAPGHR   88 (219)
T ss_pred             EEECCChH
Confidence            99999974

EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in

>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha

Probab=97.52  E-value=0.00015  Score=71.02  Aligned_cols=66  Identities=23%  Similarity=0.250  Sum_probs=44.8

Q ss_pred             CcceEEEEeCCCCCChHHHHHHHhCC--CCCCC-----------------------CceecCCCCCceeEeeeeEEecCC
Q psy15351        166 VYNTTVMVVGVPNVGKSSIINALRSS--HMKKG-----------------------KAVPVGPKAGVTRSVMSQVKISEK  220 (352)
Q Consensus       166 ~~~~~v~i~G~pnvGKStliN~l~~~--~~~~~-----------------------~~~~~~~~pg~T~~~~~~~~~~~~  220 (352)
                      .+.++|+++|.+++|||||+++|+..  .+...                       .........|+|.+.........+
T Consensus         5 ~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~~   84 (426)
T TIGR00483         5 KEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETDK   84 (426)
T ss_pred             CceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccCC
Confidence            46689999999999999999999842  01000                       000112356889887654444445


Q ss_pred             CcEEEEeCCCC
Q psy15351        221 PLIYILDTPGI  231 (352)
Q Consensus       221 ~~~~l~DtPGi  231 (352)
                      ..+.++||||.
T Consensus        85 ~~i~iiDtpGh   95 (426)
T TIGR00483        85 YEVTIVDCPGH   95 (426)
T ss_pred             eEEEEEECCCH
Confidence            57899999994

This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.

>PRK09435 membrane ATPase/protein kinase; Provisional

Probab=97.52  E-value=0.00037  Score=65.54  Aligned_cols=86  Identities=14%  Similarity=0.125  Sum_probs=54.4

Q ss_pred             HhhccCEEEEEEcCCCCCCCcCH-HHHH-HHhCCCCEEEEEEcccCCCccchHHHHHHHHhh-cC------CC-CcEEEe
Q psy15351         11 HLKNVDIVIEVHDSRMPFTGRNH-LLQQ-SVQNIRPMVLVLNKRDLINSKHESLIEEKVRKE-QS------HI-SEVIFT   80 (352)
Q Consensus        11 ~i~~aD~vl~VvDar~p~~~~~~-~l~~-~l~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~-~~------~~-~~v~~i   80 (352)
                      ++..||++++|++.   .+..+. .+.. .+  ...-++|+||+|+.+....+.....+++. ..      .+ .+++++
T Consensus       166 i~~~aD~vlvv~~p---~~gd~iq~~k~gi~--E~aDIiVVNKaDl~~~~~a~~~~~el~~~L~l~~~~~~~w~~pVi~v  240 (332)
T PRK09435        166 VAGMVDFFLLLQLP---GAGDELQGIKKGIM--ELADLIVINKADGDNKTAARRAAAEYRSALRLLRPKDPGWQPPVLTC  240 (332)
T ss_pred             HHHhCCEEEEEecC---CchHHHHHHHhhhh--hhhheEEeehhcccchhHHHHHHHHHHHHHhcccccccCCCCCEEEE
Confidence            57889999999752   222111 1111 12  23348999999998765433333333221 10      01 369999


Q ss_pred             ecCCCCCCCHHHHHHHHHHHhhh
Q psy15351         81 NCRNPNCKGVQKILPTLQHISDN  103 (352)
Q Consensus        81 Sa~~~~~~gi~~L~~~i~~~~~~  103 (352)
                      ||.++  .|+++|++.|.++++.
T Consensus       241 SA~~g--~GIdeL~~~I~~~~~~  261 (332)
T PRK09435        241 SALEG--EGIDEIWQAIEDHRAA  261 (332)
T ss_pred             ECCCC--CCHHHHHHHHHHHHHH
Confidence            99999  9999999999987763

>KOG1145|consensus

Probab=97.52  E-value=0.00078  Score=65.82  Aligned_cols=94  Identities=12%  Similarity=0.112  Sum_probs=66.4

Q ss_pred             hHHHHHHH-HhhccCEEEEEEcCCCCCCCcCHHHHHHHh-CCCCEEEEEEcccCCCccchHHHHHHHHhhcCCC------
Q psy15351          3 RGLKDIEK-HLKNVDIVIEVHDSRMPFTGRNHLLQQSVQ-NIRPMVLVLNKRDLINSKHESLIEEKVRKEQSHI------   74 (352)
Q Consensus         3 ~~~~~~~~-~i~~aD~vl~VvDar~p~~~~~~~l~~~l~-~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~------   74 (352)
                      .|+..|+. -+.-+|+|++|+-+.+.....-.+..+..+ .+.|+++.+||+|....+. +...+.+...|+..      
T Consensus       212 aAF~aMRaRGA~vtDIvVLVVAadDGVmpQT~EaIkhAk~A~VpiVvAinKiDkp~a~p-ekv~~eL~~~gi~~E~~GGd  290 (683)
T KOG1145|consen  212 AAFSAMRARGANVTDIVVLVVAADDGVMPQTLEAIKHAKSANVPIVVAINKIDKPGANP-EKVKRELLSQGIVVEDLGGD  290 (683)
T ss_pred             HHHHHHHhccCccccEEEEEEEccCCccHhHHHHHHHHHhcCCCEEEEEeccCCCCCCH-HHHHHHHHHcCccHHHcCCc
Confidence            35556664 466789999999999887765555555555 7899999999999764433 33334343443321      


Q ss_pred             CcEEEeecCCCCCCCHHHHHHHHHH
Q psy15351         75 SEVIFTNCRNPNCKGVQKILPTLQH   99 (352)
Q Consensus        75 ~~v~~iSa~~~~~~gi~~L~~~i~~   99 (352)
                      ..++++||+++  +|++.|.+++.-
T Consensus       291 VQvipiSAl~g--~nl~~L~eaill  313 (683)
T KOG1145|consen  291 VQVIPISALTG--ENLDLLEEAILL  313 (683)
T ss_pred             eeEEEeecccC--CChHHHHHHHHH
Confidence            25899999999  999999888753

>PRK00007 elongation factor G; Reviewed

Probab=97.51  E-value=0.00075  Score=70.12  Aligned_cols=54  Identities=17%  Similarity=0.185  Sum_probs=44.4

Q ss_pred             HHHHHHHHhhccCEEEEEEcCCCCCCCcCHHHHHHHh-CCCCEEEEEEcccCCCc
Q psy15351          4 GLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQ-NIRPMVLVLNKRDLINS   57 (352)
Q Consensus         4 ~~~~~~~~i~~aD~vl~VvDar~p~~~~~~~l~~~l~-~~k~~ilVlNK~Dl~~~   57 (352)
                      ...++...+..+|++++|+|+..++...+..+..++. .++|+++++||+|+.+.
T Consensus        88 f~~ev~~al~~~D~~vlVvda~~g~~~qt~~~~~~~~~~~~p~iv~vNK~D~~~~  142 (693)
T PRK00007         88 FTIEVERSLRVLDGAVAVFDAVGGVEPQSETVWRQADKYKVPRIAFVNKMDRTGA  142 (693)
T ss_pred             HHHHHHHHHHHcCEEEEEEECCCCcchhhHHHHHHHHHcCCCEEEEEECCCCCCC
Confidence            3456788899999999999999888777766666655 68899999999998754

>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]

Probab=97.51  E-value=0.00021  Score=63.00  Aligned_cols=60  Identities=20%  Similarity=0.262  Sum_probs=36.4

Q ss_pred             eEEEEeCCCCCChHHHHHHHhCCCCCCCCcee-cCCCCCceeEeeeeEEecCCCcEEEEeCCCCCC
Q psy15351        169 TTVMVVGVPNVGKSSIINALRSSHMKKGKAVP-VGPKAGVTRSVMSQVKISEKPLIYILDTPGISL  233 (352)
Q Consensus       169 ~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~-~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~~  233 (352)
                      ++|+++|.+|||||||+|++.+.......... +...|+.+......     .-.+.++||+|...
T Consensus         6 ~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~-----~~~~~~~Dt~gq~~   66 (219)
T COG1100           6 FKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRR-----NIKLQLWDTAGQEE   66 (219)
T ss_pred             EEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCC-----EEEEEeecCCCHHH
Confidence            89999999999999999999974322111111 22222222221100     12378999999764

>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional

Probab=97.50  E-value=0.00023  Score=72.54  Aligned_cols=60  Identities=18%  Similarity=0.321  Sum_probs=41.3

Q ss_pred             eEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEE-ecCCCcEEEEeCCCC
Q psy15351        169 TTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVK-ISEKPLIYILDTPGI  231 (352)
Q Consensus       169 ~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~-~~~~~~~~l~DtPGi  231 (352)
                      +.|+++|.+++|||||+|+|++...   .........|.|.+...... ...+..+.++||||.
T Consensus         1 ~ii~~~GhvdhGKTtLi~aLtg~~~---dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGh   61 (614)
T PRK10512          1 MIIATAGHVDHGKTTLLQAITGVNA---DRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGH   61 (614)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCC---ccchhcccCCceEEeeeEEEecCCCcEEEEEECCCH
Confidence            3589999999999999999996321   11223345688887643222 223456889999996

>KOG0073|consensus

Probab=97.50  E-value=0.00021  Score=59.02  Aligned_cols=147  Identities=18%  Similarity=0.251  Sum_probs=78.8

Q ss_pred             CcceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCCcEEEEeCCCCCCCC------CC--
Q psy15351        166 VYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPR------ID--  237 (352)
Q Consensus       166 ~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~~~~------~~--  237 (352)
                      .+.++|.++|..|+||||+++.+.+     .....++++-|.-....    ...+-++.++|.-|=...+      ++  
T Consensus        14 erE~riLiLGLdNsGKTti~~kl~~-----~~~~~i~pt~gf~Iktl----~~~~~~L~iwDvGGq~~lr~~W~nYfest   84 (185)
T KOG0073|consen   14 EREVRILILGLDNSGKTTIVKKLLG-----EDTDTISPTLGFQIKTL----EYKGYTLNIWDVGGQKTLRSYWKNYFEST   84 (185)
T ss_pred             hheeEEEEEecCCCCchhHHHHhcC-----CCccccCCccceeeEEE----EecceEEEEEEcCCcchhHHHHHHhhhcc
Confidence            3579999999999999999999997     44556677666544332    1223346667766633211      00  


Q ss_pred             -------CHHHHHHHHHHhhhhhhccchhhhhH-hHHhhhcCCCCCcccccccCCCCCccHH--HHHHHHHHHhc-cccc
Q psy15351        238 -------NLECGMRLAACATLQDHLVGEINIAD-YILFYLNRTGNYRYVDFFNLDEPSDDIV--MLLAKAAIKKK-WFKR  306 (352)
Q Consensus       238 -------~~~~~~~l~~~~~i~~~~~~~~~~~~-~il~~~~~~~~~~~~~~~~l~~~~~~~~--~~l~~~a~~~g-~~~~  306 (352)
                             +....+++.-|..........+.+|- .++.+.|+.+...-...       +++.  --|+.++...- ++.+
T Consensus        85 dglIwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l~~-------~~i~~~~~L~~l~ks~~~~l~~  157 (185)
T KOG0073|consen   85 DGLIWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGALSL-------EEISKALDLEELAKSHHWRLVK  157 (185)
T ss_pred             CeEEEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccccCH-------HHHHHhhCHHHhccccCceEEE
Confidence                   11112233323322222222344443 34445555543211111       1122  12344433332 4667


Q ss_pred             cccccCCcccCCCCHHHHHHHHHHHHhC
Q psy15351        307 AFDVSSNSVRMFPDTGEVARIFIEHFRK  334 (352)
Q Consensus       307 ~~~~~~g~~~~~~d~~~a~~~~l~~~~~  334 (352)
                      +++++ |.     |+.++-.++..++..
T Consensus       158 cs~~t-ge-----~l~~gidWL~~~l~~  179 (185)
T KOG0073|consen  158 CSAVT-GE-----DLLEGIDWLCDDLMS  179 (185)
T ss_pred             Eeccc-cc-----cHHHHHHHHHHHHHH
Confidence            77777 53     788888888888776

>KOG0094|consensus

Probab=97.49  E-value=0.00056  Score=58.30  Aligned_cols=90  Identities=17%  Similarity=0.181  Sum_probs=62.3

Q ss_pred             HHhhccCEEEEEEcCCCCCCCcC--HHHHHHHh-C---CCCEEEEEEcccCCCccch--HHHHHHHHhhcCCCCcEEEee
Q psy15351         10 KHLKNVDIVIEVHDSRMPFTGRN--HLLQQSVQ-N---IRPMVLVLNKRDLINSKHE--SLIEEKVRKEQSHISEVIFTN   81 (352)
Q Consensus        10 ~~i~~aD~vl~VvDar~p~~~~~--~~l~~~l~-~---~k~~ilVlNK~Dl~~~~~~--~~~~~~~~~~~~~~~~v~~iS   81 (352)
                      ..+.+++++|.|.|..+--+..+  ..+.+..+ .   ..-+++|.||.||+++.+.  ++-...-++.+..   ++.+|
T Consensus        90 sY~Rds~vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dkrqvs~eEg~~kAkel~a~---f~ets  166 (221)
T KOG0094|consen   90 SYIRDSSVAVIVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDKRQVSIEEGERKAKELNAE---FIETS  166 (221)
T ss_pred             hhccCCeEEEEEEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccchhhhhHHHHHHHHHHhCcE---EEEec
Confidence            46789999999999986544322  33444433 2   2346788999999988652  2222333344544   78899


Q ss_pred             cCCCCCCCHHHHHHHHHHHhhhc
Q psy15351         82 CRNPNCKGVQKILPTLQHISDNM  104 (352)
Q Consensus        82 a~~~~~~gi~~L~~~i~~~~~~~  104 (352)
                      |+.|  .|+++++..|...+++.
T Consensus       167 ak~g--~NVk~lFrrIaa~l~~~  187 (221)
T KOG0094|consen  167 AKAG--ENVKQLFRRIAAALPGM  187 (221)
T ss_pred             ccCC--CCHHHHHHHHHHhccCc
Confidence            9999  99999999998877754

>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]

Probab=97.48  E-value=0.00058  Score=64.71  Aligned_cols=88  Identities=15%  Similarity=0.152  Sum_probs=56.9

Q ss_pred             hHHHHHHHHhhccCEEEEEEcCCCC-------CCCcCHHHHHHHh--CCCCEEEEEEcccCCCccc--hH----HHHHHH
Q psy15351          3 RGLKDIEKHLKNVDIVIEVHDSRMP-------FTGRNHLLQQSVQ--NIRPMVLVLNKRDLINSKH--ES----LIEEKV   67 (352)
Q Consensus         3 ~~~~~~~~~i~~aD~vl~VvDar~p-------~~~~~~~l~~~l~--~~k~~ilVlNK~Dl~~~~~--~~----~~~~~~   67 (352)
                      ..++.+..-+.+||+.++|+||+.+       ......+..-+.+  .-+.+|+++||+|+++-++  .+    +....+
T Consensus        97 dFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlGi~~lIVavNKMD~v~wde~rf~ei~~~v~~l~  176 (428)
T COG5256          97 DFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLGIKQLIVAVNKMDLVSWDEERFEEIVSEVSKLL  176 (428)
T ss_pred             HHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcCCceEEEEEEcccccccCHHHHHHHHHHHHHHH
Confidence            3566777888999999999999987       3222222222222  5567899999999997432  12    222322


Q ss_pred             HhhcCCC--CcEEEeecCCCCCCCHHH
Q psy15351         68 RKEQSHI--SEVIFTNCRNPNCKGVQK   92 (352)
Q Consensus        68 ~~~~~~~--~~v~~iSa~~~~~~gi~~   92 (352)
                      +..|+..  .+++++|+.+|  .|+.+
T Consensus       177 k~~G~~~~~v~FIPiSg~~G--~Nl~~  201 (428)
T COG5256         177 KMVGYNPKDVPFIPISGFKG--DNLTK  201 (428)
T ss_pred             HHcCCCccCCeEEecccccC--Ccccc
Confidence            3335442  25889999999  77653

>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=97.47  E-value=0.00023  Score=60.88  Aligned_cols=58  Identities=21%  Similarity=0.381  Sum_probs=40.3

Q ss_pred             CcceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCCcEEEEeCCCCC
Q psy15351        166 VYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGIS  232 (352)
Q Consensus       166 ~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~  232 (352)
                      .+..+|.++|.+|+||||+++.|..     .....+.++-|.....   +.. .+..+.++|.+|=.
T Consensus        12 ~~~~~ililGl~~sGKTtll~~l~~-----~~~~~~~pT~g~~~~~---i~~-~~~~~~~~d~gG~~   69 (175)
T PF00025_consen   12 KKEIKILILGLDGSGKTTLLNRLKN-----GEISETIPTIGFNIEE---IKY-KGYSLTIWDLGGQE   69 (175)
T ss_dssp             TSEEEEEEEESTTSSHHHHHHHHHS-----SSEEEEEEESSEEEEE---EEE-TTEEEEEEEESSSG
T ss_pred             CcEEEEEEECCCccchHHHHHHhhh-----ccccccCcccccccce---eee-CcEEEEEEeccccc
Confidence            4678999999999999999999986     3333444444443322   222 34578999999853

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....

>PLN00043 elongation factor 1-alpha; Provisional

Probab=97.47  E-value=0.00072  Score=66.50  Aligned_cols=87  Identities=11%  Similarity=-0.000  Sum_probs=56.1

Q ss_pred             hHHHHHHHHhhccCEEEEEEcCCCCCCC----cCHHHHH---HHh-CCC-CEEEEEEcccCCCcc----c----hHHHHH
Q psy15351          3 RGLKDIEKHLKNVDIVIEVHDSRMPFTG----RNHLLQQ---SVQ-NIR-PMVLVLNKRDLINSK----H----ESLIEE   65 (352)
Q Consensus         3 ~~~~~~~~~i~~aD~vl~VvDar~p~~~----~~~~l~~---~l~-~~k-~~ilVlNK~Dl~~~~----~----~~~~~~   65 (352)
                      +.++.+...+..+|.+|+|+|++.....    ......+   ++. .+. ++++++||+|+.+.+    .    .++..+
T Consensus        97 df~~~~~~g~~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~~~~~gi~~iIV~vNKmD~~~~~~~~~~~~~i~~ei~~  176 (447)
T PLN00043         97 DFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSS  176 (447)
T ss_pred             HHHHHHHhhhhhccEEEEEEEcccCceecccCCCchHHHHHHHHHHcCCCcEEEEEEcccCCchhhhHHHHHHHHHHHHH
Confidence            5677888899999999999999875211    1122222   222 455 468889999987321    1    234445


Q ss_pred             HHHhhcCCC--CcEEEeecCCCCCCCHH
Q psy15351         66 KVRKEQSHI--SEVIFTNCRNPNCKGVQ   91 (352)
Q Consensus        66 ~~~~~~~~~--~~v~~iSa~~~~~~gi~   91 (352)
                      ++++.|+..  .+++++||.++  +|+.
T Consensus       177 ~l~~~g~~~~~~~~ipiSa~~G--~ni~  202 (447)
T PLN00043        177 YLKKVGYNPDKIPFVPISGFEG--DNMI  202 (447)
T ss_pred             HHHHcCCCcccceEEEEecccc--cccc
Confidence            555555431  25899999999  8874

>cd04121 Rab40 Rab40 subfamily

Probab=97.46  E-value=0.00049  Score=59.65  Aligned_cols=61  Identities=23%  Similarity=0.404  Sum_probs=36.5

Q ss_pred             cceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeee-eEEecCC-CcEEEEeCCCCCC
Q psy15351        167 YNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMS-QVKISEK-PLIYILDTPGISL  233 (352)
Q Consensus       167 ~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~-~~~~~~~-~~~~l~DtPGi~~  233 (352)
                      ..++|+++|.+|||||||++++.....    .....+.+|  .+... .+...+. -.+.++||||-..
T Consensus         5 ~~~KivviG~~~vGKTsll~~~~~~~~----~~~~~~t~~--~~~~~~~i~~~~~~~~l~iwDt~G~~~   67 (189)
T cd04121           5 YLLKFLLVGDSDVGKGEILASLQDGST----ESPYGYNMG--IDYKTTTILLDGRRVKLQLWDTSGQGR   67 (189)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCC----CCCCCCcce--eEEEEEEEEECCEEEEEEEEeCCCcHH
Confidence            458999999999999999999985211    111112222  22211 1222211 2477899999753

This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d

>cd04129 Rho2 Rho2 subfamily

Probab=97.45  E-value=0.00031  Score=60.62  Aligned_cols=22  Identities=23%  Similarity=0.477  Sum_probs=20.2

Q ss_pred             eEEEEeCCCCCChHHHHHHHhC
Q psy15351        169 TTVMVVGVPNVGKSSIINALRS  190 (352)
Q Consensus       169 ~~v~i~G~pnvGKStliN~l~~  190 (352)
                      .+++++|.+|+|||||++.+..
T Consensus         2 ~Ki~ivG~~g~GKStLl~~l~~   23 (187)
T cd04129           2 RKLVIVGDGACGKTSLLSVFTL   23 (187)
T ss_pred             eEEEEECCCCCCHHHHHHHHHh
Confidence            4799999999999999999974

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).

>PRK13351 elongation factor G; Reviewed

Probab=97.45  E-value=0.00023  Score=73.96  Aligned_cols=66  Identities=18%  Similarity=0.149  Sum_probs=39.5

Q ss_pred             ceEEEEeCCCCCChHHHHHHHhCCCCCCCCce------ecCC------CCCceeEeeeeEEecCCCcEEEEeCCCCCC
Q psy15351        168 NTTVMVVGVPNVGKSSIINALRSSHMKKGKAV------PVGP------KAGVTRSVMSQVKISEKPLIYILDTPGISL  233 (352)
Q Consensus       168 ~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~------~~~~------~pg~T~~~~~~~~~~~~~~~~l~DtPGi~~  233 (352)
                      ..+|+++|..|+|||||+++|....-......      ...+      ..|.|...........+..+.++||||..+
T Consensus         8 irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~d   85 (687)
T PRK13351          8 IRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGHID   85 (687)
T ss_pred             ccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCcHH
Confidence            46899999999999999999984210000000      0111      234444432222223455799999999864

>KOG0072|consensus

Probab=97.44  E-value=0.00058  Score=55.28  Aligned_cols=88  Identities=19%  Similarity=0.177  Sum_probs=60.7

Q ss_pred             HhhccCEEEEEEcCCC--CCCCcCHHHHHHHh----CCCCEEEEEEcccCCCccchHHH-----HHHHHhhcCCCCcEEE
Q psy15351         11 HLKNVDIVIEVHDSRM--PFTGRNHLLQQSVQ----NIRPMVLVLNKRDLINSKHESLI-----EEKVRKEQSHISEVIF   79 (352)
Q Consensus        11 ~i~~aD~vl~VvDar~--p~~~~~~~l~~~l~----~~k~~ilVlNK~Dl~~~~~~~~~-----~~~~~~~~~~~~~v~~   79 (352)
                      ..++.|.+|+|||..+  .++....++...++    .+..+++++||.|....-...+.     ++.++++.+.   ++-
T Consensus        82 Yy~dt~avIyVVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~~t~~E~~~~L~l~~Lk~r~~~---Iv~  158 (182)
T KOG0072|consen   82 YYADTDAVIYVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGALTRSEVLKMLGLQKLKDRIWQ---IVK  158 (182)
T ss_pred             HhcccceEEEEEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhhhhHHHHHHHhChHHHhhheeE---EEe
Confidence            5688999999999864  33433344444443    45678899999998654322332     2334444444   888


Q ss_pred             eecCCCCCCCHHHHHHHHHHHhhh
Q psy15351         80 TNCRNPNCKGVQKILPTLQHISDN  103 (352)
Q Consensus        80 iSa~~~~~~gi~~L~~~i~~~~~~  103 (352)
                      .||.++  +|++...+|+.+-+++
T Consensus       159 tSA~kg--~Gld~~~DWL~~~l~~  180 (182)
T KOG0072|consen  159 TSAVKG--EGLDPAMDWLQRPLKS  180 (182)
T ss_pred             eccccc--cCCcHHHHHHHHHHhc
Confidence            999999  9999999999876653

>PRK00741 prfC peptide chain release factor 3; Provisional

Probab=97.44  E-value=0.0004  Score=69.54  Aligned_cols=24  Identities=21%  Similarity=0.412  Sum_probs=21.2

Q ss_pred             cceEEEEeCCCCCChHHHHHHHhC
Q psy15351        167 YNTTVMVVGVPNVGKSSIINALRS  190 (352)
Q Consensus       167 ~~~~v~i~G~pnvGKStliN~l~~  190 (352)
                      ...+|+++|.+|+|||||+++|+.
T Consensus         9 ~~Rni~IiGh~daGKTTL~e~Ll~   32 (526)
T PRK00741          9 KRRTFAIISHPDAGKTTLTEKLLL   32 (526)
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHH
Confidence            346899999999999999999973

>PRK04004 translation initiation factor IF-2; Validated

Probab=97.44  E-value=0.00021  Score=72.47  Aligned_cols=24  Identities=25%  Similarity=0.552  Sum_probs=22.0

Q ss_pred             cceEEEEeCCCCCChHHHHHHHhC
Q psy15351        167 YNTTVMVVGVPNVGKSSIINALRS  190 (352)
Q Consensus       167 ~~~~v~i~G~pnvGKStliN~l~~  190 (352)
                      ++..|+++|.+|+|||||+|+|++
T Consensus         5 R~p~V~i~Gh~~~GKTSLl~~l~~   28 (586)
T PRK04004          5 RQPIVVVLGHVDHGKTTLLDKIRG   28 (586)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhC
Confidence            566899999999999999999986

>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily

Probab=97.43  E-value=0.00043  Score=59.61  Aligned_cols=25  Identities=20%  Similarity=0.493  Sum_probs=22.4

Q ss_pred             cceEEEEeCCCCCChHHHHHHHhCC
Q psy15351        167 YNTTVMVVGVPNVGKSSIINALRSS  191 (352)
Q Consensus       167 ~~~~v~i~G~pnvGKStliN~l~~~  191 (352)
                      ..++|+++|.++||||||++++...
T Consensus         4 ~~~KivvvGd~~vGKTsli~~~~~~   28 (182)
T cd04172           4 VKCKIVVVGDSQCGKTALLHVFAKD   28 (182)
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHhC
Confidence            4578999999999999999999863

Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight

>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily

Probab=97.43  E-value=0.00033  Score=62.34  Aligned_cols=22  Identities=23%  Similarity=0.551  Sum_probs=20.7

Q ss_pred             eEEEEeCCCCCChHHHHHHHhC
Q psy15351        169 TTVMVVGVPNVGKSSIINALRS  190 (352)
Q Consensus       169 ~~v~i~G~pnvGKStliN~l~~  190 (352)
                      ++|+++|.+|||||+|++++..
T Consensus         2 ~KIvvvGd~~vGKTsLi~~~~~   23 (222)
T cd04173           2 CKIVVVGDAECGKTALLQVFAK   23 (222)
T ss_pred             eEEEEECCCCCCHHHHHHHHHc
Confidence            5799999999999999999986

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma

>cd04128 Spg1 Spg1p

Probab=97.42  E-value=0.00035  Score=60.09  Aligned_cols=59  Identities=17%  Similarity=0.183  Sum_probs=34.5

Q ss_pred             eEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCC-CcEEEEeCCCCC
Q psy15351        169 TTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEK-PLIYILDTPGIS  232 (352)
Q Consensus       169 ~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~-~~~~l~DtPGi~  232 (352)
                      ++|+++|.+|||||||++++.....    .....++-|..-.. ..+...+. -.+.++||+|-.
T Consensus         1 ~Ki~vlG~~~vGKTsLi~~~~~~~f----~~~~~~T~g~~~~~-~~i~~~~~~~~l~iwDt~G~~   60 (182)
T cd04128           1 LKIGLLGDAQIGKTSLMVKYVEGEF----DEDYIQTLGVNFME-KTISIRGTEITFSIWDLGGQR   60 (182)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCC----CCCCCCccceEEEE-EEEEECCEEEEEEEEeCCCch
Confidence            4799999999999999999986321    11122222221111 11222221 247899999964

Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are

>KOG0092|consensus

Probab=97.41  E-value=0.00044  Score=58.76  Aligned_cols=87  Identities=15%  Similarity=0.074  Sum_probs=62.3

Q ss_pred             HhhccCEEEEEEcCCCCCCCcCHHHHHHHh-----C--CCCEEEEEEcccCCCccc--hHHHHHHHHhhcCCCCcEEEee
Q psy15351         11 HLKNVDIVIEVHDSRMPFTGRNHLLQQSVQ-----N--IRPMVLVLNKRDLINSKH--ESLIEEKVRKEQSHISEVIFTN   81 (352)
Q Consensus        11 ~i~~aD~vl~VvDar~p~~~~~~~l~~~l~-----~--~k~~ilVlNK~Dl~~~~~--~~~~~~~~~~~~~~~~~v~~iS   81 (352)
                      ...+|+.+|.|.|.++.-+.  ..+..|++     .  +.-+.+|.||+||.....  ..+...|..+.|..   ++-+|
T Consensus        74 YyRgA~AAivvYDit~~~SF--~~aK~WvkeL~~~~~~~~vialvGNK~DL~~~R~V~~~ea~~yAe~~gll---~~ETS  148 (200)
T KOG0092|consen   74 YYRGANAAIVVYDITDEESF--EKAKNWVKELQRQASPNIVIALVGNKADLLERREVEFEEAQAYAESQGLL---FFETS  148 (200)
T ss_pred             eecCCcEEEEEEecccHHHH--HHHHHHHHHHHhhCCCCeEEEEecchhhhhhcccccHHHHHHHHHhcCCE---EEEEe
Confidence            45789999999999875332  22223332     1  223455899999998432  45566666666776   88999


Q ss_pred             cCCCCCCCHHHHHHHHHHHhhhc
Q psy15351         82 CRNPNCKGVQKILPTLQHISDNM  104 (352)
Q Consensus        82 a~~~~~~gi~~L~~~i~~~~~~~  104 (352)
                      |+++  .|+++|+..|.+.++..
T Consensus       149 AKTg--~Nv~~if~~Ia~~lp~~  169 (200)
T KOG0092|consen  149 AKTG--ENVNEIFQAIAEKLPCS  169 (200)
T ss_pred             cccc--cCHHHHHHHHHHhccCc
Confidence            9999  99999999998877754

>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]

Probab=97.41  E-value=0.00025  Score=71.12  Aligned_cols=85  Identities=21%  Similarity=0.248  Sum_probs=60.5

Q ss_pred             hccCEEEEEEcCCCCCCCcCHHH-HHHHhCCCCEEEEEEcccCCCccchHHHHHHHH-hhcCCCCcEEEeecCCCCCCCH
Q psy15351         13 KNVDIVIEVHDSRMPFTGRNHLL-QQSVQNIRPMVLVLNKRDLINSKHESLIEEKVR-KEQSHISEVIFTNCRNPNCKGV   90 (352)
Q Consensus        13 ~~aD~vl~VvDar~p~~~~~~~l-~~~l~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~-~~~~~~~~v~~iSa~~~~~~gi   90 (352)
                      +..|+|+.|+||.+-  .++-.+ .++++.++|+++++|++|...+....--.+.+. ..|.+   |+++||+++  +|+
T Consensus        80 ~~~D~ivnVvDAtnL--eRnLyltlQLlE~g~p~ilaLNm~D~A~~~Gi~ID~~~L~~~LGvP---Vv~tvA~~g--~G~  152 (653)
T COG0370          80 GKPDLIVNVVDATNL--ERNLYLTLQLLELGIPMILALNMIDEAKKRGIRIDIEKLSKLLGVP---VVPTVAKRG--EGL  152 (653)
T ss_pred             CCCCEEEEEcccchH--HHHHHHHHHHHHcCCCeEEEeccHhhHHhcCCcccHHHHHHHhCCC---EEEEEeecC--CCH
Confidence            567999999999863  233222 244447899999999999876643221122232 34776   999999999  999


Q ss_pred             HHHHHHHHHHhhhc
Q psy15351         91 QKILPTLQHISDNM  104 (352)
Q Consensus        91 ~~L~~~i~~~~~~~  104 (352)
                      +++++.+.+..+..
T Consensus       153 ~~l~~~i~~~~~~~  166 (653)
T COG0370         153 EELKRAIIELAESK  166 (653)
T ss_pred             HHHHHHHHHhcccc
Confidence            99999987665543

>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=97.41  E-value=0.0002  Score=59.74  Aligned_cols=58  Identities=31%  Similarity=0.411  Sum_probs=34.4

Q ss_pred             EEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecC-CCcEEEEeCCCCC
Q psy15351        170 TVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISE-KPLIYILDTPGIS  232 (352)
Q Consensus       170 ~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~-~~~~~l~DtPGi~  232 (352)
                      +|+++|.++||||||++++.+...    .....+..|...... .+...+ .-.+.++||+|-.
T Consensus         1 Ki~vvG~~~vGKtsl~~~~~~~~~----~~~~~~t~~~~~~~~-~~~~~~~~~~l~i~D~~g~~   59 (162)
T PF00071_consen    1 KIVVVGDSGVGKTSLINRLINGEF----PENYIPTIGIDSYSK-EVSIDGKPVNLEIWDTSGQE   59 (162)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSST----TSSSETTSSEEEEEE-EEEETTEEEEEEEEEETTSG
T ss_pred             CEEEECCCCCCHHHHHHHHHhhcc----ccccccccccccccc-cccccccccccccccccccc
Confidence            589999999999999999986321    111222223222211 122211 1158899999953

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....

>TIGR01393 lepA GTP-binding protein LepA

Probab=97.41  E-value=0.00054  Score=69.73  Aligned_cols=65  Identities=17%  Similarity=0.228  Sum_probs=39.7

Q ss_pred             EEEEeCCCCCChHHHHHHHhCCC--CCCC-CceecC------CCCCceeEeeee-EEec--CC--CcEEEEeCCCCCCC
Q psy15351        170 TVMVVGVPNVGKSSIINALRSSH--MKKG-KAVPVG------PKAGVTRSVMSQ-VKIS--EK--PLIYILDTPGISLP  234 (352)
Q Consensus       170 ~v~i~G~pnvGKStliN~l~~~~--~~~~-~~~~~~------~~pg~T~~~~~~-~~~~--~~--~~~~l~DtPGi~~~  234 (352)
                      +++++|.+++|||||+++|....  +... ....+.      ...|.|...... +.+.  ++  -.+.|+||||....
T Consensus         5 Ni~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~dF   83 (595)
T TIGR01393         5 NFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDF   83 (595)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHHH
Confidence            69999999999999999998521  0000 011111      234777765431 1111  22  25789999999753

LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.

>cd04120 Rab12 Rab12 subfamily

Probab=97.39  E-value=0.0005  Score=60.25  Aligned_cols=57  Identities=23%  Similarity=0.356  Sum_probs=33.8

Q ss_pred             EEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeee-eEEecC-CCcEEEEeCCCCC
Q psy15351        170 TVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMS-QVKISE-KPLIYILDTPGIS  232 (352)
Q Consensus       170 ~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~-~~~~~~-~~~~~l~DtPGi~  232 (352)
                      .|+++|.+|||||||++++......    ....++.|  .+... .+...+ .-.+.++||+|-.
T Consensus         2 ~vvvlG~~gVGKTSli~r~~~~~f~----~~~~~Ti~--~~~~~~~i~~~~~~v~l~iwDtaGqe   60 (202)
T cd04120           2 QVIIIGSRGVGKTSLMRRFTDDTFC----EACKSGVG--VDFKIKTVELRGKKIRLQIWDTAGQE   60 (202)
T ss_pred             EEEEECcCCCCHHHHHHHHHhCCCC----CcCCCcce--eEEEEEEEEECCEEEEEEEEeCCCch
Confidence            5899999999999999999853211    11112222  22211 222221 1257899999964

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic

>cd04133 Rop_like Rop subfamily

Probab=97.39  E-value=0.00049  Score=58.94  Aligned_cols=59  Identities=19%  Similarity=0.175  Sum_probs=35.0

Q ss_pred             eEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecC-CCcEEEEeCCCCCC
Q psy15351        169 TTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISE-KPLIYILDTPGISL  233 (352)
Q Consensus       169 ~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~-~~~~~l~DtPGi~~  233 (352)
                      ++++++|.++||||||+.++.......    ...++-|.+-  ...+...+ .-.+.++||+|-..
T Consensus         2 ~kivv~G~~~vGKTsli~~~~~~~f~~----~~~~Ti~~~~--~~~~~~~~~~v~l~i~Dt~G~~~   61 (176)
T cd04133           2 IKCVTVGDGAVGKTCMLICYTSNKFPT----DYIPTVFDNF--SANVSVDGNTVNLGLWDTAGQED   61 (176)
T ss_pred             eEEEEECCCCCcHHHHHHHHhcCCCCC----CCCCcceeee--EEEEEECCEEEEEEEEECCCCcc
Confidence            579999999999999999998632211    1112222111  11122221 12578999999654

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,

>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]

Probab=97.39  E-value=0.00068  Score=65.20  Aligned_cols=93  Identities=14%  Similarity=0.208  Sum_probs=65.5

Q ss_pred             HHHhhccCEEEEEEcCCCCCCCcC-HHHHHHHhCCCCEEEEEEcccCCCccchHHHHHHHHh-hcCCCCcEEEeecCCCC
Q psy15351          9 EKHLKNVDIVIEVHDSRMPFTGRN-HLLQQSVQNIRPMVLVLNKRDLINSKHESLIEEKVRK-EQSHISEVIFTNCRNPN   86 (352)
Q Consensus         9 ~~~i~~aD~vl~VvDar~p~~~~~-~~l~~~l~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~-~~~~~~~v~~iSa~~~~   86 (352)
                      .+.++.|.-.|+|+||..+..... ..+...+..+-.++-|+||+||...+. +...+.+.. .|++....+.+||++| 
T Consensus        94 SRSLAACEGalLvVDAsQGveAQTlAN~YlAle~~LeIiPViNKIDLP~Adp-ervk~eIe~~iGid~~dav~~SAKtG-  171 (603)
T COG0481          94 SRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPAADP-ERVKQEIEDIIGIDASDAVLVSAKTG-  171 (603)
T ss_pred             hhhHhhCCCcEEEEECccchHHHHHHHHHHHHHcCcEEEEeeecccCCCCCH-HHHHHHHHHHhCCCcchheeEecccC-
Confidence            456778888999999987654321 112222225677899999999976543 333333322 3666667899999999 


Q ss_pred             CCCHHHHHHHHHHHhhhc
Q psy15351         87 CKGVQKILPTLQHISDNM  104 (352)
Q Consensus        87 ~~gi~~L~~~i~~~~~~~  104 (352)
                       .|++++++.|.+.+|..
T Consensus       172 -~gI~~iLe~Iv~~iP~P  188 (603)
T COG0481         172 -IGIEDVLEAIVEKIPPP  188 (603)
T ss_pred             -CCHHHHHHHHHhhCCCC
Confidence             99999999999888754

>KOG0076|consensus

Probab=97.36  E-value=0.00041  Score=57.94  Aligned_cols=100  Identities=15%  Similarity=0.099  Sum_probs=67.9

Q ss_pred             hHHHHHHH-HhhccCEEEEEEcCCCCCCCc--CHHHHHHHh----CCCCEEEEEEcccCCCccchHHHHHHHH--hh-cC
Q psy15351          3 RGLKDIEK-HLKNVDIVIEVHDSRMPFTGR--NHLLQQSVQ----NIRPMVLVLNKRDLINSKHESLIEEKVR--KE-QS   72 (352)
Q Consensus         3 ~~~~~~~~-~i~~aD~vl~VvDar~p~~~~--~~~l~~~l~----~~k~~ilVlNK~Dl~~~~~~~~~~~~~~--~~-~~   72 (352)
                      +.++.+|+ .-..++.|++|+||.++--..  ...+...+.    .+.|+++.+||-|+-+.-...+....+.  +. +-
T Consensus        80 e~lrSlw~~yY~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~~~~~El~~~~~~~e~~~~  159 (197)
T KOG0076|consen   80 ESLRSLWKKYYWLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNAMEAAELDGVFGLAELIPR  159 (197)
T ss_pred             HHHHHHHHHHHHHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhhhhHHHHHHHhhhhhhcCC
Confidence            45667775 458899999999998742111  122323222    6899999999999977655555544443  11 11


Q ss_pred             CCCcEEEeecCCCCCCCHHHHHHHHHHHhhhc
Q psy15351         73 HISEVIFTNCRNPNCKGVQKILPTLQHISDNM  104 (352)
Q Consensus        73 ~~~~v~~iSa~~~~~~gi~~L~~~i~~~~~~~  104 (352)
                      +..++.++||.++  +|+++-+.|+...++.+
T Consensus       160 rd~~~~pvSal~g--egv~egi~w~v~~~~kn  189 (197)
T KOG0076|consen  160 RDNPFQPVSALTG--EGVKEGIEWLVKKLEKN  189 (197)
T ss_pred             ccCccccchhhhc--ccHHHHHHHHHHHHhhc
Confidence            1125789999999  99999999988777654

>PRK10218 GTP-binding protein; Provisional

Probab=97.36  E-value=0.00059  Score=69.35  Aligned_cols=66  Identities=17%  Similarity=0.224  Sum_probs=42.6

Q ss_pred             eEEEEeCCCCCChHHHHHHHhCCC--CCCCCc--------eecCCCCCceeEeeeeEEecCCCcEEEEeCCCCCCC
Q psy15351        169 TTVMVVGVPNVGKSSIINALRSSH--MKKGKA--------VPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLP  234 (352)
Q Consensus       169 ~~v~i~G~pnvGKStliN~l~~~~--~~~~~~--------~~~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~~~  234 (352)
                      -+|+++|..++|||||+++|....  +.....        .......|.|...........+..+.++||||....
T Consensus         6 RnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df   81 (607)
T PRK10218          6 RNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADF   81 (607)
T ss_pred             eEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchh
Confidence            469999999999999999998521  100000        011234677766543333344567999999997653

>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily

Probab=97.34  E-value=0.00054  Score=61.35  Aligned_cols=25  Identities=20%  Similarity=0.446  Sum_probs=22.4

Q ss_pred             cceEEEEeCCCCCChHHHHHHHhCC
Q psy15351        167 YNTTVMVVGVPNVGKSSIINALRSS  191 (352)
Q Consensus       167 ~~~~v~i~G~pnvGKStliN~l~~~  191 (352)
                      ..++|+++|.+|||||+|++.+...
T Consensus        12 ~~~KIvvvGd~~VGKTsLi~r~~~~   36 (232)
T cd04174          12 MRCKLVLVGDVQCGKTAMLQVLAKD   36 (232)
T ss_pred             eeEEEEEECCCCCcHHHHHHHHhcC
Confidence            4589999999999999999999863

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd01885 EF2 EF2 (for archaea and eukarya)

Probab=97.32  E-value=0.00051  Score=61.11  Aligned_cols=21  Identities=14%  Similarity=0.411  Sum_probs=19.5

Q ss_pred             EEEEeCCCCCChHHHHHHHhC
Q psy15351        170 TVMVVGVPNVGKSSIINALRS  190 (352)
Q Consensus       170 ~v~i~G~pnvGKStliN~l~~  190 (352)
                      +|+++|..+.|||||+++|..
T Consensus         2 NvaiiGhvd~GKTTL~d~Ll~   22 (222)
T cd01885           2 NICIIAHVDHGKTTLSDSLLA   22 (222)
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999999975

Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco

>cd01875 RhoG RhoG subfamily

Probab=97.32  E-value=0.00068  Score=58.72  Aligned_cols=23  Identities=26%  Similarity=0.436  Sum_probs=21.2

Q ss_pred             ceEEEEeCCCCCChHHHHHHHhC
Q psy15351        168 NTTVMVVGVPNVGKSSIINALRS  190 (352)
Q Consensus       168 ~~~v~i~G~pnvGKStliN~l~~  190 (352)
                      .++|+++|.+|||||||++.+..
T Consensus         3 ~~ki~~vG~~~vGKTsli~~~~~   25 (191)
T cd01875           3 SIKCVVVGDGAVGKTCLLICYTT   25 (191)
T ss_pred             cEEEEEECCCCCCHHHHHHHHHh
Confidence            37899999999999999999985

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin

>KOG0073|consensus

Probab=97.31  E-value=0.0015  Score=54.19  Aligned_cols=94  Identities=17%  Similarity=0.126  Sum_probs=62.4

Q ss_pred             hHHHHHHH-HhhccCEEEEEEcCCCCCCCcC--HHHHHHHh----CCCCEEEEEEcccCCCccchHHHH------HHHHh
Q psy15351          3 RGLKDIEK-HLKNVDIVIEVHDSRMPFTGRN--HLLQQSVQ----NIRPMVLVLNKRDLINSKHESLIE------EKVRK   69 (352)
Q Consensus         3 ~~~~~~~~-~i~~aD~vl~VvDar~p~~~~~--~~l~~~l~----~~k~~ilVlNK~Dl~~~~~~~~~~------~~~~~   69 (352)
                      +.++..|+ +.+.+|.+|+|+|..++..-.+  .++.+++.    .+.|++++.||.|+.+.-...++.      +.++.
T Consensus        71 ~~lr~~W~nYfestdglIwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l~~~~i~~~~~L~~l~ks  150 (185)
T KOG0073|consen   71 KTLRSYWKNYFESTDGLIWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGALSLEEISKALDLEELAKS  150 (185)
T ss_pred             chhHHHHHHhhhccCeEEEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccccCHHHHHHhhCHHHhccc
Confidence            44566664 7799999999999977643222  23333332    578999999999997543322222      22233


Q ss_pred             hcCCCCcEEEeecCCCCCCCHHHHHHHHHHHh
Q psy15351         70 EQSHISEVIFTNCRNPNCKGVQKILPTLQHIS  101 (352)
Q Consensus        70 ~~~~~~~v~~iSa~~~~~~gi~~L~~~i~~~~  101 (352)
                      ...+   ++-+|+.++  +++.+=++|+..-+
T Consensus       151 ~~~~---l~~cs~~tg--e~l~~gidWL~~~l  177 (185)
T KOG0073|consen  151 HHWR---LVKCSAVTG--EDLLEGIDWLCDDL  177 (185)
T ss_pred             cCce---EEEEecccc--ccHHHHHHHHHHHH
Confidence            3444   888999999  88888888876543

>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily

Probab=97.29  E-value=0.0013  Score=58.51  Aligned_cols=85  Identities=16%  Similarity=0.078  Sum_probs=53.8

Q ss_pred             HhhccCEEEEEEcCCCCCCCcCH--HHHHHHh---CCCCEEEEEEcccCCCccc--------------hHHHHHHHHhhc
Q psy15351         11 HLKNVDIVIEVHDSRMPFTGRNH--LLQQSVQ---NIRPMVLVLNKRDLINSKH--------------ESLIEEKVRKEQ   71 (352)
Q Consensus        11 ~i~~aD~vl~VvDar~p~~~~~~--~l~~~l~---~~k~~ilVlNK~Dl~~~~~--------------~~~~~~~~~~~~   71 (352)
                      ....+|++|+|.|..++.+..+-  .+...+.   .+.|+++|.||+||.+...              .++-.++-++.+
T Consensus        69 ~~~~~d~illvfdis~~~Sf~~i~~~w~~~~~~~~~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~  148 (222)
T cd04173          69 AYPDSDAVLICFDISRPETLDSVLKKWQGETQEFCPNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVG  148 (222)
T ss_pred             hccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcC
Confidence            46899999999999887433221  1222222   4689999999999965310              111122222334


Q ss_pred             CCCCcEEEeecCCCCCC-CHHHHHHHHHH
Q psy15351         72 SHISEVIFTNCRNPNCK-GVQKILPTLQH   99 (352)
Q Consensus        72 ~~~~~v~~iSa~~~~~~-gi~~L~~~i~~   99 (352)
                      ..  .++.+||+++  . |+++++..+..
T Consensus       149 ~~--~y~E~SAk~~--~~~V~~~F~~~~~  173 (222)
T cd04173         149 AV--SYVECSSRSS--ERSVRDVFHVATV  173 (222)
T ss_pred             CC--EEEEcCCCcC--CcCHHHHHHHHHH
Confidence            21  4888999988  7 59999887654

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma

>PRK00741 prfC peptide chain release factor 3; Provisional

Probab=97.29  E-value=0.0021  Score=64.47  Aligned_cols=52  Identities=21%  Similarity=0.216  Sum_probs=39.9

Q ss_pred             HHHHHHHhhccCEEEEEEcCCCCCCCcCHHHHHHHh-CCCCEEEEEEcccCCC
Q psy15351          5 LKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQ-NIRPMVLVLNKRDLIN   56 (352)
Q Consensus         5 ~~~~~~~i~~aD~vl~VvDar~p~~~~~~~l~~~l~-~~k~~ilVlNK~Dl~~   56 (352)
                      ...++..+..+|.+++|+|+..........+.+... .+.|+++++||+|+..
T Consensus        93 ~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~iPiiv~iNK~D~~~  145 (526)
T PRK00741         93 SEDTYRTLTAVDSALMVIDAAKGVEPQTRKLMEVCRLRDTPIFTFINKLDRDG  145 (526)
T ss_pred             HHHHHHHHHHCCEEEEEEecCCCCCHHHHHHHHHHHhcCCCEEEEEECCcccc
Confidence            455778899999999999998776444344444443 6899999999999864

>TIGR00073 hypB hydrogenase accessory protein HypB

Probab=97.28  E-value=0.0013  Score=57.73  Aligned_cols=56  Identities=20%  Similarity=0.298  Sum_probs=41.3

Q ss_pred             CCCEEEEEEcccCCCcc--chHHHHHHHHhhcCCCCcEEEeecCCCCCCCHHHHHHHHHHH
Q psy15351         42 IRPMVLVLNKRDLINSK--HESLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHI  100 (352)
Q Consensus        42 ~k~~ilVlNK~Dl~~~~--~~~~~~~~~~~~~~~~~~v~~iSa~~~~~~gi~~L~~~i~~~  100 (352)
                      .++.++|+||+|+.+..  ......+.+++.+ +..+++.+||+++  .|++++++++.+.
T Consensus       148 ~~a~iiv~NK~Dl~~~~~~~~~~~~~~l~~~~-~~~~i~~~Sa~~g--~gv~~l~~~i~~~  205 (207)
T TIGR00073       148 KEADLIVINKADLAEAVGFDVEKMKADAKKIN-PEAEIILMSLKTG--EGLDEWLEFLEGQ  205 (207)
T ss_pred             hhCCEEEEEHHHccccchhhHHHHHHHHHHhC-CCCCEEEEECCCC--CCHHHHHHHHHHh
Confidence            56789999999998642  2344555554433 2236999999999  9999999998754

HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.

>TIGR02034 CysN sulfate adenylyltransferase, large subunit

Probab=97.26  E-value=0.00027  Score=68.78  Aligned_cols=64  Identities=22%  Similarity=0.325  Sum_probs=40.9

Q ss_pred             eEEEEeCCCCCChHHHHHHHhCCC--CCCC-------------C------------ceecCCCCCceeEeeeeEEecCCC
Q psy15351        169 TTVMVVGVPNVGKSSIINALRSSH--MKKG-------------K------------AVPVGPKAGVTRSVMSQVKISEKP  221 (352)
Q Consensus       169 ~~v~i~G~pnvGKStliN~l~~~~--~~~~-------------~------------~~~~~~~pg~T~~~~~~~~~~~~~  221 (352)
                      ++++++|.+++|||||+++|+...  +..+             .            ........|.|.+.........+.
T Consensus         1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~   80 (406)
T TIGR02034         1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKR   80 (406)
T ss_pred             CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCe
Confidence            468999999999999999997421  0000             0            000112346677765444444566


Q ss_pred             cEEEEeCCCCC
Q psy15351        222 LIYILDTPGIS  232 (352)
Q Consensus       222 ~~~l~DtPGi~  232 (352)
                      ++.|+||||..
T Consensus        81 ~~~liDtPGh~   91 (406)
T TIGR02034        81 KFIVADTPGHE   91 (406)
T ss_pred             EEEEEeCCCHH
Confidence            89999999953

Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).

>KOG3859|consensus

Probab=97.26  E-value=0.00039  Score=62.38  Aligned_cols=66  Identities=18%  Similarity=0.294  Sum_probs=43.2

Q ss_pred             CcceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCC---CcEEEEeCCCCCCC
Q psy15351        166 VYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEK---PLIYILDTPGISLP  234 (352)
Q Consensus       166 ~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~---~~~~l~DtPGi~~~  234 (352)
                      +-.++|+-||.+|.|||||+++|.+..+.  .....+..|++-...++ +.+-.+   -.++++||.|+++-
T Consensus        40 GF~FNilCvGETg~GKsTLmdtLFNt~f~--~~p~~H~~~~V~L~~~T-yelqEsnvrlKLtiv~tvGfGDQ  108 (406)
T KOG3859|consen   40 GFCFNILCVGETGLGKSTLMDTLFNTKFE--SEPSTHTLPNVKLQANT-YELQESNVRLKLTIVDTVGFGDQ  108 (406)
T ss_pred             CceEEEEEeccCCccHHHHHHHHhccccC--CCCCccCCCCceeecch-hhhhhcCeeEEEEEEeecccccc
Confidence            45689999999999999999999985432  22334455554332221 111111   14789999999974

>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=97.25  E-value=0.0011  Score=55.23  Aligned_cols=86  Identities=21%  Similarity=0.208  Sum_probs=59.0

Q ss_pred             HHhhccCEEEEEEcCCCCCCCcC-HHHHHHHh---C-CCCEEEEEEcccCCCccc--hHHHHHHHHhhcCCCCcEEEeec
Q psy15351         10 KHLKNVDIVIEVHDSRMPFTGRN-HLLQQSVQ---N-IRPMVLVLNKRDLINSKH--ESLIEEKVRKEQSHISEVIFTNC   82 (352)
Q Consensus        10 ~~i~~aD~vl~VvDar~p~~~~~-~~l~~~l~---~-~k~~ilVlNK~Dl~~~~~--~~~~~~~~~~~~~~~~~v~~iSa   82 (352)
                      ..+.++|++++|.|..++-+... ..+...+.   . ..|+++|.||.|+.....  .++..++.++.+.   +++.+||
T Consensus        67 ~~~~~~~~~ii~fd~~~~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~~~~~v~~~~~~~~~~~~~~---~~~e~Sa  143 (162)
T PF00071_consen   67 IFYRNSDAIIIVFDVTDEESFENLKKWLEEIQKYKPEDIPIIVVGNKSDLSDEREVSVEEAQEFAKELGV---PYFEVSA  143 (162)
T ss_dssp             HHHTTESEEEEEEETTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGGGGSSSCHHHHHHHHHHTTS---EEEEEBT
T ss_pred             ccccccccccccccccccccccccccccccccccccccccceeeeccccccccccchhhHHHHHHHHhCC---EEEEEEC
Confidence            46789999999999886533222 11222222   3 579999999999986332  3444555555554   4899999


Q ss_pred             CCCCCCCHHHHHHHHHHH
Q psy15351         83 RNPNCKGVQKILPTLQHI  100 (352)
Q Consensus        83 ~~~~~~gi~~L~~~i~~~  100 (352)
                      +++  .|+.+++..+.+.
T Consensus       144 ~~~--~~v~~~f~~~i~~  159 (162)
T PF00071_consen  144 KNG--ENVKEIFQELIRK  159 (162)
T ss_dssp             TTT--TTHHHHHHHHHHH
T ss_pred             CCC--CCHHHHHHHHHHH
Confidence            999  9999988777543

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....

>cd04167 Snu114p Snu114p subfamily

Probab=97.24  E-value=0.00033  Score=61.86  Aligned_cols=21  Identities=29%  Similarity=0.482  Sum_probs=19.5

Q ss_pred             EEEEeCCCCCChHHHHHHHhC
Q psy15351        170 TVMVVGVPNVGKSSIINALRS  190 (352)
Q Consensus       170 ~v~i~G~pnvGKStliN~l~~  190 (352)
                      +|+++|.+++|||||+++|+.
T Consensus         2 nv~iiG~~~~GKTtL~~~l~~   22 (213)
T cd04167           2 NVAIAGHLHHGKTSLLDMLIE   22 (213)
T ss_pred             cEEEEcCCCCCHHHHHHHHHH
Confidence            489999999999999999985

Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.

>KOG0084|consensus

Probab=97.24  E-value=0.0021  Score=54.88  Aligned_cols=90  Identities=19%  Similarity=0.122  Sum_probs=60.9

Q ss_pred             HHHHhhccCEEEEEEcCCCCCCCcCHHHHHHHh-------CCCCEEEEEEcccCCCccch--HHHHHHHHhhcCCCCcEE
Q psy15351          8 IEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQ-------NIRPMVLVLNKRDLINSKHE--SLIEEKVRKEQSHISEVI   78 (352)
Q Consensus         8 ~~~~i~~aD~vl~VvDar~p~~~~~~~l~~~l~-------~~k~~ilVlNK~Dl~~~~~~--~~~~~~~~~~~~~~~~v~   78 (352)
                      +...-..|+.||+|.|.++-.+..+  +.+|+.       .+.|.++|.||+|+.+...+  ++..++..+.+.+  .++
T Consensus        75 t~syYR~ahGii~vyDiT~~~SF~~--v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~~~v~~~~a~~fa~~~~~~--~f~  150 (205)
T KOG0084|consen   75 TSSYYRGAHGIIFVYDITKQESFNN--VKRWIQEIDRYASENVPKLLVGNKCDLTEKRVVSTEEAQEFADELGIP--IFL  150 (205)
T ss_pred             hHhhccCCCeEEEEEEcccHHHhhh--HHHHHHHhhhhccCCCCeEEEeeccccHhheecCHHHHHHHHHhcCCc--cee
Confidence            4456688999999999987543322  222221       45689999999999876542  2333333333443  378


Q ss_pred             EeecCCCCCCCHHHHHHHHHHHhhh
Q psy15351         79 FTNCRNPNCKGVQKILPTLQHISDN  103 (352)
Q Consensus        79 ~iSa~~~~~~gi~~L~~~i~~~~~~  103 (352)
                      .+||+++  .++++.+..+...+..
T Consensus       151 ETSAK~~--~NVe~~F~~la~~lk~  173 (205)
T KOG0084|consen  151 ETSAKDS--TNVEDAFLTLAKELKQ  173 (205)
T ss_pred             ecccCCc--cCHHHHHHHHHHHHHH
Confidence            8999999  9999988877655543

>PRK12740 elongation factor G; Reviewed

Probab=97.22  E-value=0.0021  Score=66.67  Aligned_cols=53  Identities=15%  Similarity=0.161  Sum_probs=39.7

Q ss_pred             HHHHHHHhhccCEEEEEEcCCCCCCCcCHHHHHHHh-CCCCEEEEEEcccCCCc
Q psy15351          5 LKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQ-NIRPMVLVLNKRDLINS   57 (352)
Q Consensus         5 ~~~~~~~i~~aD~vl~VvDar~p~~~~~~~l~~~l~-~~k~~ilVlNK~Dl~~~   57 (352)
                      ...+...+..+|++++|+|+..+.......+...+. .+.|+++|+||+|+...
T Consensus        74 ~~~~~~~l~~aD~vllvvd~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~D~~~~  127 (668)
T PRK12740         74 TGEVERALRVLDGAVVVVCAVGGVEPQTETVWRQAEKYGVPRIIFVNKMDRAGA  127 (668)
T ss_pred             HHHHHHHHHHhCeEEEEEeCCCCcCHHHHHHHHHHHHcCCCEEEEEECCCCCCC
Confidence            356677889999999999998766544433333333 67899999999998753

>cd04102 RabL3 RabL3 (Rab-like3) subfamily

Probab=97.22  E-value=0.00085  Score=58.81  Aligned_cols=23  Identities=39%  Similarity=0.615  Sum_probs=20.8

Q ss_pred             eEEEEeCCCCCChHHHHHHHhCC
Q psy15351        169 TTVMVVGVPNVGKSSIINALRSS  191 (352)
Q Consensus       169 ~~v~i~G~pnvGKStliN~l~~~  191 (352)
                      ++|+++|.++||||||++.+.+.
T Consensus         1 vKIvlvGd~gVGKTSLi~~~~~~   23 (202)
T cd04102           1 VRVLVVGDSGVGKSSLVHLICKN   23 (202)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcC
Confidence            47999999999999999999963

RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.

>PTZ00132 GTP-binding nuclear protein Ran; Provisional

Probab=97.21  E-value=0.0019  Score=57.02  Aligned_cols=88  Identities=19%  Similarity=0.091  Sum_probs=57.9

Q ss_pred             HhhccCEEEEEEcCCCCCCCcC-HHHH-HHHh--CCCCEEEEEEcccCCCccchHHHHHHHHhhcCCCCcEEEeecCCCC
Q psy15351         11 HLKNVDIVIEVHDSRMPFTGRN-HLLQ-QSVQ--NIRPMVLVLNKRDLINSKHESLIEEKVRKEQSHISEVIFTNCRNPN   86 (352)
Q Consensus        11 ~i~~aD~vl~VvDar~p~~~~~-~~l~-~~l~--~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~v~~iSa~~~~   86 (352)
                      ....+|.+++|.|.....+... ..+. .+.+  .+.|+++|.||+|+.+........++.+..+..   ++.+||+++ 
T Consensus        78 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~i~lv~nK~Dl~~~~~~~~~~~~~~~~~~~---~~e~Sa~~~-  153 (215)
T PTZ00132         78 YYIKGQCAIIMFDVTSRITYKNVPNWHRDIVRVCENIPIVLVGNKVDVKDRQVKARQITFHRKKNLQ---YYDISAKSN-  153 (215)
T ss_pred             HhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccCccccCCHHHHHHHHHcCCE---EEEEeCCCC-
Confidence            4568999999999986543211 1111 1111  467899999999997543323333444444444   889999999 


Q ss_pred             CCCHHHHHHHHHHHhhh
Q psy15351         87 CKGVQKILPTLQHISDN  103 (352)
Q Consensus        87 ~~gi~~L~~~i~~~~~~  103 (352)
                       .|+++.+.+|.+.+..
T Consensus       154 -~~v~~~f~~ia~~l~~  169 (215)
T PTZ00132        154 -YNFEKPFLWLARRLTN  169 (215)
T ss_pred             -CCHHHHHHHHHHHHhh
Confidence             9999988887765543

>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]

Probab=97.21  E-value=0.0028  Score=60.89  Aligned_cols=98  Identities=13%  Similarity=0.138  Sum_probs=70.2

Q ss_pred             HHHHHhhccCEEEEEEcCCCCCCCcCHHHH-HHHhCCCCEEEEEEcccCCCcc---chHHHHHHHHhhcCC----CCcEE
Q psy15351          7 DIEKHLKNVDIVIEVHDSRMPFTGRNHLLQ-QSVQNIRPMVLVLNKRDLINSK---HESLIEEKVRKEQSH----ISEVI   78 (352)
Q Consensus         7 ~~~~~i~~aD~vl~VvDar~p~~~~~~~l~-~~l~~~k~~ilVlNK~Dl~~~~---~~~~~~~~~~~~~~~----~~~v~   78 (352)
                      +..+.++.+|-|++|+||...+...-.+.. +.+..+-+-|+|+||+|.....   .+++..+.|-+.+..    -.+++
T Consensus        84 EVERvl~MVDgvlLlVDA~EGpMPQTrFVlkKAl~~gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf~~L~A~deQLdFPiv  163 (603)
T COG1217          84 EVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALALGLKPIVVINKIDRPDARPDEVVDEVFDLFVELGATDEQLDFPIV  163 (603)
T ss_pred             hhhhhhhhcceEEEEEEcccCCCCchhhhHHHHHHcCCCcEEEEeCCCCCCCCHHHHHHHHHHHHHHhCCChhhCCCcEE
Confidence            467889999999999999988777666554 4455444448999999987543   356666666554322    01588


Q ss_pred             EeecCCCC--------CCCHHHHHHHHHHHhhhc
Q psy15351         79 FTNCRNPN--------CKGVQKILPTLQHISDNM  104 (352)
Q Consensus        79 ~iSa~~~~--------~~gi~~L~~~i~~~~~~~  104 (352)
                      +.|++.|.        ...+.-|++.|.+++|..
T Consensus       164 YAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~P  197 (603)
T COG1217         164 YASARNGTASLDPEDEADDMAPLFETILDHVPAP  197 (603)
T ss_pred             EeeccCceeccCccccccchhHHHHHHHHhCCCC
Confidence            99998872        356788999999988754

>COG1163 DRG Predicted GTPase [General function prediction only]

Probab=97.20  E-value=0.00075  Score=62.04  Aligned_cols=51  Identities=14%  Similarity=0.196  Sum_probs=40.2

Q ss_pred             CCEEEEEEcccCCCccchHHHHHHHHhhcCCCCcEEEeecCCCCCCCHHHHHHHHHHHhhh
Q psy15351         43 RPMVLVLNKRDLINSKHESLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDN  103 (352)
Q Consensus        43 k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~v~~iSa~~~~~~gi~~L~~~i~~~~~~  103 (352)
                      +|.++|+||+|+.+.+......+.+        +.+++||+.+  .|+++|++.|-..+.-
T Consensus       240 ~p~l~v~NKiD~~~~e~~~~l~~~~--------~~v~isa~~~--~nld~L~e~i~~~L~l  290 (365)
T COG1163         240 KPALYVVNKIDLPGLEELERLARKP--------NSVPISAKKG--INLDELKERIWDVLGL  290 (365)
T ss_pred             eeeEEEEecccccCHHHHHHHHhcc--------ceEEEecccC--CCHHHHHHHHHHhhCe
Confidence            7999999999999865444333322        4899999999  9999999998876654

>PRK13351 elongation factor G; Reviewed

Probab=97.19  E-value=0.0026  Score=66.13  Aligned_cols=54  Identities=17%  Similarity=0.223  Sum_probs=41.0

Q ss_pred             HHHHHHHHhhccCEEEEEEcCCCCCCCcCHHHHHHHh-CCCCEEEEEEcccCCCc
Q psy15351          4 GLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQ-NIRPMVLVLNKRDLINS   57 (352)
Q Consensus         4 ~~~~~~~~i~~aD~vl~VvDar~p~~~~~~~l~~~l~-~~k~~ilVlNK~Dl~~~   57 (352)
                      ....+...+..+|.+++|+|+..+.......+...+. .+.|+++|+||+|+...
T Consensus        86 f~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~iiviNK~D~~~~  140 (687)
T PRK13351         86 FTGEVERSLRVLDGAVVVFDAVTGVQPQTETVWRQADRYGIPRLIFINKMDRVGA  140 (687)
T ss_pred             HHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEECCCCCCC
Confidence            3456778899999999999998876544444444443 67899999999998754

>TIGR00101 ureG urease accessory protein UreG

Probab=97.15  E-value=0.0019  Score=56.47  Aligned_cols=81  Identities=23%  Similarity=0.292  Sum_probs=51.0

Q ss_pred             cCEEEEEEcCCCCCCCcCHHHHHHHhCCCCEEEEEEcccCCCc--cchHHHHHHHHhhcCCCCcEEEeecCCCCCCCHHH
Q psy15351         15 VDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINS--KHESLIEEKVRKEQSHISEVIFTNCRNPNCKGVQK   92 (352)
Q Consensus        15 aD~vl~VvDar~p~~~~~~~l~~~l~~~k~~ilVlNK~Dl~~~--~~~~~~~~~~~~~~~~~~~v~~iSa~~~~~~gi~~   92 (352)
                      +|.++.|+|+........ .....+  ...-++|+||+|+.+.  ...+...+.++.... ..+++.+||+++  +|+++
T Consensus       113 ~~~~i~vvD~~~~~~~~~-~~~~qi--~~ad~~~~~k~d~~~~~~~~~~~~~~~~~~~~~-~~~i~~~Sa~~g--~gi~e  186 (199)
T TIGR00101       113 ADLTIFVIDVAAGDKIPR-KGGPGI--TRSDLLVINKIDLAPMVGADLGVMERDAKKMRG-EKPFIFTNLKTK--EGLDT  186 (199)
T ss_pred             hCcEEEEEEcchhhhhhh-hhHhHh--hhccEEEEEhhhccccccccHHHHHHHHHHhCC-CCCEEEEECCCC--CCHHH
Confidence            577888999875433111 101111  1223899999999863  334444444444321 236999999999  99999


Q ss_pred             HHHHHHHHh
Q psy15351         93 ILPTLQHIS  101 (352)
Q Consensus        93 L~~~i~~~~  101 (352)
                      +++++.+..
T Consensus       187 l~~~i~~~~  195 (199)
T TIGR00101       187 VIDWIEHYA  195 (199)
T ss_pred             HHHHHHhhc
Confidence            999987643

This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.

>KOG0461|consensus

Probab=97.13  E-value=0.0056  Score=56.79  Aligned_cols=95  Identities=16%  Similarity=0.169  Sum_probs=60.3

Q ss_pred             HHHHHHHhhccCEEEEEEcCCCCCCCcCHH---HHHHHhCCCCEEEEEEcccCCCccchHHHHHHHH--------hhcCC
Q psy15351          5 LKDIEKHLKNVDIVIEVHDSRMPFTGRNHL---LQQSVQNIRPMVLVLNKRDLINSKHESLIEEKVR--------KEQSH   73 (352)
Q Consensus         5 ~~~~~~~i~~aD~vl~VvDar~p~~~~~~~---l~~~l~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~--------~~~~~   73 (352)
                      +|.+.-...-.|+.++|+|+..+......+   +-+++  .+++++|+||+|+.++..+...++...        ..++.
T Consensus        84 IRtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~~--c~klvvvinkid~lpE~qr~ski~k~~kk~~KtLe~t~f~  161 (522)
T KOG0461|consen   84 IRTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGELL--CKKLVVVINKIDVLPENQRASKIEKSAKKVRKTLESTGFD  161 (522)
T ss_pred             HHHHHhhhheeeeeeEEEehhcccccccchhhhhhhhh--ccceEEEEeccccccchhhhhHHHHHHHHHHHHHHhcCcC
Confidence            444555566779999999998765443322   22333  567899999999999876544443322        22222


Q ss_pred             -CCcEEEeecCCCC--CCCHHHHHHHHHHHh
Q psy15351         74 -ISEVIFTNCRNPN--CKGVQKILPTLQHIS  101 (352)
Q Consensus        74 -~~~v~~iSa~~~~--~~gi~~L~~~i~~~~  101 (352)
                       -.+++.+||..|-  .+++.+|++.+.+.+
T Consensus       162 g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~i  192 (522)
T KOG0461|consen  162 GNSPIVEVSAADGYFKEEMIQELKEALESRI  192 (522)
T ss_pred             CCCceeEEecCCCccchhHHHHHHHHHHHhh
Confidence             1369999999872  355666666665443

>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA

Probab=97.11  E-value=0.0008  Score=68.40  Aligned_cols=64  Identities=22%  Similarity=0.345  Sum_probs=40.6

Q ss_pred             EEEEeCCCCCChHHHHHHHhCCC--CCCCCce--------ecCCCCCceeEeeeeEEecCCCcEEEEeCCCCCC
Q psy15351        170 TVMVVGVPNVGKSSIINALRSSH--MKKGKAV--------PVGPKAGVTRSVMSQVKISEKPLIYILDTPGISL  233 (352)
Q Consensus       170 ~v~i~G~pnvGKStliN~l~~~~--~~~~~~~--------~~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~~  233 (352)
                      +|+++|..++|||||+++|+...  +......        ......|.|...........+..+.++||||..+
T Consensus         3 NIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~D   76 (594)
T TIGR01394         3 NIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHAD   76 (594)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHH
Confidence            58999999999999999998521  1000000        0112456666654333334556799999999754

This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.

>PRK09866 hypothetical protein; Provisional

Probab=97.10  E-value=0.0008  Score=67.61  Aligned_cols=59  Identities=17%  Similarity=0.213  Sum_probs=41.4

Q ss_pred             ceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEec--CCCcEEEEeCCCCCC
Q psy15351        168 NTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKIS--EKPLIYILDTPGISL  233 (352)
Q Consensus       168 ~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~--~~~~~~l~DtPGi~~  233 (352)
                      .+.++++|.+|+|||||+|+|.|     .....+++.|.+|. +. .+...  ......+.||-|++.
T Consensus        69 ~~~valvG~sgaGKSTLiNaL~G-----~~Vlpt~~~~~t~l-pT-~i~~~pg~re~~L~~dtvgfI~  129 (741)
T PRK09866         69 EMVLAIVGTMKAGKSTTINAIVG-----TEVLPNRNRPMTAL-PT-LIRHTPGQKEPVLHFSHVAPID  129 (741)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhC-----CccccCCCcccccc-cE-EEEecCCcCceeeecCCccchH
Confidence            48999999999999999999998     45666777777765 22 22211  122355677877775

>TIGR00503 prfC peptide chain release factor 3

Probab=97.10  E-value=0.0042  Score=62.33  Aligned_cols=51  Identities=24%  Similarity=0.234  Sum_probs=39.4

Q ss_pred             HHHHHHHhhccCEEEEEEcCCCCCCCcCHHHHHHHh-CCCCEEEEEEcccCC
Q psy15351          5 LKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQ-NIRPMVLVLNKRDLI   55 (352)
Q Consensus         5 ~~~~~~~i~~aD~vl~VvDar~p~~~~~~~l~~~l~-~~k~~ilVlNK~Dl~   55 (352)
                      ...++..+..+|.+|+|+|+...+......+.+.++ .+.|+++++||+|+.
T Consensus        94 ~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~~PiivviNKiD~~  145 (527)
T TIGR00503        94 SEDTYRTLTAVDNCLMVIDAAKGVETRTRKLMEVTRLRDTPIFTFMNKLDRD  145 (527)
T ss_pred             HHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEECcccc
Confidence            456788899999999999998765444344444444 678999999999985

This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.

>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2)

Probab=97.06  E-value=0.001  Score=58.33  Aligned_cols=23  Identities=26%  Similarity=0.420  Sum_probs=20.7

Q ss_pred             eEEEEeCCCCCChHHHHHHHhCC
Q psy15351        169 TTVMVVGVPNVGKSSIINALRSS  191 (352)
Q Consensus       169 ~~v~i~G~pnvGKStliN~l~~~  191 (352)
                      ++|+++|..++|||||+.+|.+.
T Consensus         1 ~~i~~~g~~~~GKttL~~~l~~~   23 (203)
T cd01888           1 INIGTIGHVAHGKSTLVKALSGV   23 (203)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            46999999999999999999864

eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel

>cd04169 RF3 RF3 subfamily

Probab=97.05  E-value=0.0042  Score=56.89  Aligned_cols=54  Identities=20%  Similarity=0.209  Sum_probs=40.5

Q ss_pred             HHHHHHHhhccCEEEEEEcCCCCCCCcCHHHHHHHh-CCCCEEEEEEcccCCCcc
Q psy15351          5 LKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQ-NIRPMVLVLNKRDLINSK   58 (352)
Q Consensus         5 ~~~~~~~i~~aD~vl~VvDar~p~~~~~~~l~~~l~-~~k~~ilVlNK~Dl~~~~   58 (352)
                      ...++..+..+|.+++|+|+..+.......+.++.. .+.|+++++||+|+....
T Consensus        85 ~~~~~~~l~~aD~~IlVvda~~g~~~~~~~i~~~~~~~~~P~iivvNK~D~~~a~  139 (267)
T cd04169          85 SEDTYRTLTAVDSAVMVIDAAKGVEPQTRKLFEVCRLRGIPIITFINKLDREGRD  139 (267)
T ss_pred             HHHHHHHHHHCCEEEEEEECCCCccHHHHHHHHHHHhcCCCEEEEEECCccCCCC
Confidence            445778889999999999998765443334444443 578999999999986654

Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.

>KOG1532|consensus

Probab=97.05  E-value=0.0039  Score=56.16  Aligned_cols=87  Identities=17%  Similarity=0.213  Sum_probs=58.3

Q ss_pred             CEEEEEEcCC---CCCCCcCHHHH--HHH-hCCCCEEEEEEcccCCCccchHHHHHHHHhhc------------------
Q psy15351         16 DIVIEVHDSR---MPFTGRNHLLQ--QSV-QNIRPMVLVLNKRDLINSKHESLIEEKVRKEQ------------------   71 (352)
Q Consensus        16 D~vl~VvDar---~p~~~~~~~l~--~~l-~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~------------------   71 (352)
                      -+|++|+|.-   .|.+.....+.  .++ +..-|+|+|+||+|+.+.+-..+|..-|....                  
T Consensus       149 tvv~YvvDt~rs~~p~tFMSNMlYAcSilyktklp~ivvfNK~Dv~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~Sm  228 (366)
T KOG1532|consen  149 TVVVYVVDTPRSTSPTTFMSNMLYACSILYKTKLPFIVVFNKTDVSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSM  228 (366)
T ss_pred             eEEEEEecCCcCCCchhHHHHHHHHHHHHHhccCCeEEEEecccccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhH
Confidence            3788999963   33333222222  122 25679999999999999887778865543210                  


Q ss_pred             -------CCCCcEEEeecCCCCCCCHHHHHHHHHHHhhhc
Q psy15351         72 -------SHISEVIFTNCRNPNCKGVQKILPTLQHISDNM  104 (352)
Q Consensus        72 -------~~~~~v~~iSa~~~~~~gi~~L~~~i~~~~~~~  104 (352)
                             +....++-+|+.+|  .|+++++.++.+.+.+.
T Consensus       229 SL~leeFY~~lrtv~VSs~tG--~G~ddf~~av~~~vdEy  266 (366)
T KOG1532|consen  229 SLMLEEFYRSLRTVGVSSVTG--EGFDDFFTAVDESVDEY  266 (366)
T ss_pred             HHHHHHHHhhCceEEEecccC--CcHHHHHHHHHHHHHHH
Confidence                   00123678999999  99999999998777654

>TIGR00484 EF-G translation elongation factor EF-G

Probab=97.03  E-value=0.0019  Score=67.15  Aligned_cols=54  Identities=17%  Similarity=0.209  Sum_probs=42.8

Q ss_pred             HHHHHHHhhccCEEEEEEcCCCCCCCcCHHHHHHHh-CCCCEEEEEEcccCCCcc
Q psy15351          5 LKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQ-NIRPMVLVLNKRDLINSK   58 (352)
Q Consensus         5 ~~~~~~~i~~aD~vl~VvDar~p~~~~~~~l~~~l~-~~k~~ilVlNK~Dl~~~~   58 (352)
                      ...+...+..+|++++|+|+..+.......+..++. .+.|+++++||+|+...+
T Consensus        89 ~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~~  143 (689)
T TIGR00484        89 TVEVERSLRVLDGAVAVLDAVGGVQPQSETVWRQANRYEVPRIAFVNKMDKTGAN  143 (689)
T ss_pred             hHHHHHHHHHhCEEEEEEeCCCCCChhHHHHHHHHHHcCCCEEEEEECCCCCCCC
Confidence            345678899999999999999877665555555554 678999999999998654

After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.

>smart00053 DYNc Dynamin, GTPase

Probab=97.02  E-value=0.0046  Score=55.55  Aligned_cols=63  Identities=13%  Similarity=0.229  Sum_probs=47.1

Q ss_pred             HHHHHHhh-ccCEEEEEEcCCCCCCCcC-HHHHHHHh-CCCCEEEEEEcccCCCccchHHHHHHHHhh
Q psy15351          6 KDIEKHLK-NVDIVIEVHDSRMPFTGRN-HLLQQSVQ-NIRPMVLVLNKRDLINSKHESLIEEKVRKE   70 (352)
Q Consensus         6 ~~~~~~i~-~aD~vl~VvDar~p~~~~~-~~l~~~l~-~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~   70 (352)
                      +++..+++ ..++|++|+|++..+...+ ..+.+.+. .+++.++|+||+|..++.  .+|.+.++..
T Consensus       153 ~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~ld~~~~rti~ViTK~D~~~~~--~~~~~~~~~~  218 (240)
T smart00053      153 DMIKQFISKEECLILAVTPANVDLANSDALKLAKEVDPQGERTIGVITKLDLMDEG--TDARDILENK  218 (240)
T ss_pred             HHHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHHHHcCCcEEEEEECCCCCCcc--HHHHHHHhCC
Confidence            34777888 4569999999998776655 35666655 678999999999998765  3477777543

Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.

>cd04103 Centaurin_gamma Centaurin gamma

Probab=97.01  E-value=0.0017  Score=54.49  Aligned_cols=22  Identities=23%  Similarity=0.369  Sum_probs=19.7

Q ss_pred             eEEEEeCCCCCChHHHHHHHhC
Q psy15351        169 TTVMVVGVPNVGKSSIINALRS  190 (352)
Q Consensus       169 ~~v~i~G~pnvGKStliN~l~~  190 (352)
                      ++|+++|.+|||||||++.+..
T Consensus         1 ~ki~vvG~~gvGKTsli~~~~~   22 (158)
T cd04103           1 LKLGIVGNLQSGKSALVHRYLT   22 (158)
T ss_pred             CEEEEECCCCCcHHHHHHHHHh
Confidence            3699999999999999998875

The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.

>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=97.00  E-value=0.0005  Score=58.87  Aligned_cols=59  Identities=24%  Similarity=0.360  Sum_probs=33.3

Q ss_pred             eEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCC-CCceeEeeeeEEecCCCcEEEEeCCCCCCCC
Q psy15351        169 TTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPK-AGVTRSVMSQVKISEKPLIYILDTPGISLPR  235 (352)
Q Consensus       169 ~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~-pg~T~~~~~~~~~~~~~~~~l~DtPGi~~~~  235 (352)
                      -.|.++|.+|+||++|+..|...    ....++.+. |..+.    .+....+..+.++|+||-...+
T Consensus         4 ~~vlL~Gps~SGKTaLf~~L~~~----~~~~T~tS~e~n~~~----~~~~~~~~~~~lvD~PGH~rlr   63 (181)
T PF09439_consen    4 PTVLLVGPSGSGKTALFSQLVNG----KTVPTVTSMENNIAY----NVNNSKGKKLRLVDIPGHPRLR   63 (181)
T ss_dssp             -EEEEE-STTSSHHHHHHHHHHS----S---B---SSEEEEC----CGSSTCGTCECEEEETT-HCCC
T ss_pred             ceEEEEcCCCCCHHHHHHHHhcC----CcCCeeccccCCceE----EeecCCCCEEEEEECCCcHHHH
Confidence            46899999999999999999862    111111111 11110    0111234579999999987653

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	352
1puj_A	282	Structure Of B. Subtilis Ylqf Gtpase Length = 282		2e-16
3r9w_A	307	Crystal Structure Of Era In Complex With Mggdpnp An		2e-06
3iev_A	308	Crystal Structure Of Era In Complex With Mggnp And		2e-06
3cnl_A	262	Crystal Structure Of Gnp-Bound Ylqf From T. Maritim		9e-06
3cnl_A	262	Crystal Structure Of Gnp-Bound Ylqf From T. Maritim		1e-05
1xzp_A	482	Structure Of The Gtp-Binding Protein Trme From Ther		1e-04
1wf3_A	301	Crystal Structure Of Gtp-Binding Protein Tt1341 Fro		7e-04

>pdb|1PUJ|A Chain A, Structure Of B. Subtilis Ylqf Gtpase Length = 282

Iteration: 1
 Score = 83.2 bits (204), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 70/294 (23%), Positives = 133/294 (45%), Gaps = 65/294 (22%)
Query: 1   MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
           M +  +++ + LK +DIV E+ D+R+P + RN +++  ++N +P +++LNK D    K +
Sbjct: 10  MAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDILKN-KPRIMLLNKAD----KAD 64
Query: 61  SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
           + + ++  KE      +   +  + N +G+ +I+P  + I                    
Sbjct: 65  AAVTQQW-KEHFENQGIRSLSINSVNGQGLNQIVPASKEI-------------------- 103
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
                                         LQ   D M R    +      +++G+PNVG
Sbjct: 104 ------------------------------LQEKFDRM-RAKGVKPRAIRALIIGIPNVG 132
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
           KS++IN L   ++ K      G + G+T S    VK+ ++  + +LDTPGI  P+ ++  
Sbjct: 133 KSTLINRLAKKNIAK-----TGDRPGITTS-QQWVKVGKE--LELLDTPGILWPKFEDEL 184
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLL 294
            G+RLA    ++D ++   ++A + L +L      R  + + LDE  +DI  L 
Sbjct: 185 VGLRLAVTGAIKDSIINLQDVAVFGLRFLEEHYPERLKERYGLDEIPEDIAELF 238

>pdb|3R9W|A Chain A, Crystal Structure Of Era In Complex With Mggdpnp And Nucleotides 1506- 1542 Of 16s Ribosomal Rna Length = 307

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/111 (37%), Positives = 57/111 (51%), Gaps = 15/111 (13%)
Query: 171 VMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVK-ISEKPLIYILDTP 229
           V +VG PNVGKS+++N L  +     K   + PKAG TR  +  VK I  +  I  LDTP
Sbjct: 12  VAIVGKPNVGKSTLLNNLLGT-----KVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTP 66
Query: 230 GISLP-RIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVD 279
           GI  P + D L   M   A  +L++        AD ILF ++ T  +R  D
Sbjct: 67  GIYEPKKSDVLGHSMVEIAKQSLEE--------ADVILFMIDATEGWRPRD 109

>pdb|3IEV|A Chain A, Crystal Structure Of Era In Complex With Mggnp And The 3' End Of 16s Rrna Length = 308

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/111 (37%), Positives = 57/111 (51%), Gaps = 15/111 (13%)
Query: 171 VMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVK-ISEKPLIYILDTP 229
           V +VG PNVGKS+++N L  +     K   + PKAG TR  +  VK I  +  I  LDTP
Sbjct: 13  VAIVGKPNVGKSTLLNNLLGT-----KVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTP 67
Query: 230 GISLP-RIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVD 279
           GI  P + D L   M   A  +L++        AD ILF ++ T  +R  D
Sbjct: 68  GIYEPKKSDVLGHSMVEIAKQSLEE--------ADVILFMIDATEGWRPRD 110

>pdb|3CNL|A Chain A, Crystal Structure Of Gnp-Bound Ylqf From T. Maritima Length = 262

Iteration: 1
 Score = 47.8 bits (112), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 48/155 (30%), Positives = 75/155 (48%), Gaps = 28/155 (18%)
Query: 3   RGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHESL 62
           R +KD+   L+ V+ V+EV D+R PF    + +  S +     +++LNK D+ + K    
Sbjct: 13  RQIKDL---LRLVNTVVEVRDARAPFATSAYGVDFSRKE---TIILLNKVDIADEKTTKK 66
Query: 63  IEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHIS-DNMTRYHRTEVYNTTVMVVG 121
             E  +K+      VI T+   P     +K+L  L+ +S D + R          V++VG
Sbjct: 67  WVEFFKKQGKR---VITTHKGEP-----RKVL--LKKLSFDRLAR----------VLIVG 106
Query: 122 VPNVGKSSIINALRSSHMKKGKAVP-ILPTLQHIS 155
           VPN GKS+IIN L+        A P I   +Q  S
Sbjct: 107 VPNTGKSTIINKLKGKRASSVGAQPGITKGIQWFS 141

>pdb|3CNL|A Chain A, Crystal Structure Of Gnp-Bound Ylqf From T. Maritima Length = 262

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 29/81 (35%), Positives = 44/81 (54%), Gaps = 8/81 (9%)
Query: 171 VMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPG 230
           V++VGVPN GKS+IIN L+       +A  VG + G+T+ +      S +  + ILDTPG
Sbjct: 102 VLIVGVPNTGKSTIINKLKGK-----RASSVGAQPGITKGIQW---FSLENGVKILDTPG 153
Query: 231 ISLPRIDNLECGMRLAACATL 251
           I    I + +   +L    +L
Sbjct: 154 ILYKNIFSEDLAAKLLLVGSL 174

>pdb|1XZP|A Chain A, Structure Of The Gtp-Binding Protein Trme From Thermotoga Maritima Length = 482

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/100 (35%), Positives = 51/100 (51%), Gaps = 13/100 (13%)
Query: 171 VMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPG 230
           +++VG PNVGKS+++N L +        +P     G TR V+S+  +    L  I+DT G
Sbjct: 246 MVIVGKPNVGKSTLLNRLLNEDRAIVTDIP-----GTTRDVISEEIVIRGILFRIVDTAG 300
Query: 231 ISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLN 270
           +     D +E   RL    TLQ     EI  AD +LF L+
Sbjct: 301 VRSETNDLVE---RLGIERTLQ-----EIEKADIVLFVLD 332

>pdb|1WF3|A Chain A, Crystal Structure Of Gtp-Binding Protein Tt1341 From Thermus Thermophilus Hb8 Length = 301

Iteration: 1
 Score = 41.6 bits (96), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 5/68 (7%)
Query: 167 YNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYIL 226
           Y+  V +VG PNVGKS+++N L        K  P+ P+   TR  +  +    +  I  +
Sbjct: 6   YSGFVAIVGKPNVGKSTLLNNLLGV-----KVAPISPRPQTTRKRLRGILTEGRRQIVFV 60
Query: 227 DTPGISLP 234
           DTPG+  P
Sbjct: 61  DTPGLHKP 68

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	352
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	1e-70
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	1e-37
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	4e-27
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	3e-17
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	9e-16
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	5e-13
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-12
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	1e-08
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	2e-04
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	3e-08
3qq5_A	423	Small GTP-binding protein; hydrogenase, H-cluster,	1e-06
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	4e-06
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	1e-05
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	2e-05
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	9e-04
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	2e-05
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	2e-05
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	5e-04
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	4e-05
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	4e-05
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	8e-05
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	1e-04
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	1e-04
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	1e-04
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	2e-04
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	2e-04
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	6e-04
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	9e-04

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8 Length = 282

 Score =  221 bits (564), Expect = 1e-70
 Identities = 73/344 (21%), Positives = 137/344 (39%), Gaps = 74/344 (21%)

Query: 1   MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
           M +  +++ + LK +DIV E+ D+R+P + RN +++  ++N +P +++LNK D  ++   
Sbjct: 10  MAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDILKN-KPRIMLLNKADKADAAVT 68

Query: 61  SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
              +E    +       +  N  N   +G+ +I+P  + I        R           
Sbjct: 69  QQWKEHFENQGIR---SLSINSVNG--QGLNQIVPASKEILQEKFDRMRA---------- 113

Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
                              K  K   I                        +++G+PNVG
Sbjct: 114 -------------------KGVKPRAI----------------------RALIIGIPNVG 132

Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
           KS++IN L      K      G + G+T S    VK+ ++  + +LDTPGI  P+ ++  
Sbjct: 133 KSTLINRLA-----KKNIAKTGDRPGITTS-QQWVKVGKE--LELLDTPGILWPKFEDEL 184

Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIK 300
            G+RLA    ++D ++   ++A + L +L      R  + + LDE  +DI  L      K
Sbjct: 185 VGLRLAVTGAIKDSIINLQDVAVFGLRFLEEHYPERLKERYGLDEIPEDIAELFDAIGEK 244

Query: 301 KKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDR 344
           +                  +  +   + I   R   FG +  ++
Sbjct: 245 RGCLMSGGL---------INYDKTTEVIIRDIRTEKFGRLSFEQ 279

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A* Length = 262

 Score =  134 bits (340), Expect = 1e-37
 Identities = 40/174 (22%), Positives = 65/174 (37%), Gaps = 28/174 (16%)

Query: 171 VMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPG 230
           V++VGVPN GKS+IIN L+       +A  VG + G+T+  +    +     + ILDTPG
Sbjct: 102 VLIVGVPNTGKSTIINKLK-----GKRASSVGAQPGITKG-IQWFSLENG--VKILDTPG 153

Query: 231 ISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDI 290
           I    I + +   +L    +L    + +  I +       R           ++    + 
Sbjct: 154 ILYKNIFSEDLAAKLLLVGSLPVERIEDQRIFERAFEIFAR----SI----GIESSFSEF 205

Query: 291 VMLLAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDR 344
               A+        KR            PD      +F     +G  G V  +R
Sbjct: 206 FEDFAR--------KRGLLKKGGV----PDIERALMLFFTEVAQGKAGRVSFER 247

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A* Length = 262

 Score =  106 bits (267), Expect = 4e-27
 Identities = 38/141 (26%), Positives = 64/141 (45%), Gaps = 22/141 (15%)

Query: 1   MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
           + +  + I+  L+ V+ V+EV D+R PF    + +  S    +  +++LNK D+ + K  
Sbjct: 8   IEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYGVDFSR---KETIILLNKVDIADEKTT 64

Query: 61  SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
               E  +K+      VI T+   P    ++K+            R  R       V++V
Sbjct: 65  KKWVEFFKKQGKR---VITTHKGEPRKVLLKKLSF---------DRLAR-------VLIV 105

Query: 121 GVPNVGKSSIINALRSSHMKK 141
           GVPN GKS+IIN L+      
Sbjct: 106 GVPNTGKSTIINKLKGKRASS 126

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str} Length = 368

 Score = 80.8 bits (199), Expect = 3e-17
 Identities = 36/236 (15%), Positives = 70/236 (29%), Gaps = 75/236 (31%)

Query: 5   LKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLI-----NSKH 59
           L+ +    K+  +V+++ D           L + V N   ++LV NK DLI     + K 
Sbjct: 60  LRILNGIGKSDALVVKIVDIFDFNGSWLPGLHRFVGN-NKVLLVGNKADLIPKSVKHDKV 118

Query: 60  ESLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMV 119
           +  +    ++      +V   +      +G+ ++   +++                 V V
Sbjct: 119 KHWMRYSAKQLGLKPEDVFLISAAK--GQGIAELADAIEYYRGGKD-----------VYV 165

Query: 120 VGVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNV 179
           VG  NVGKS+ IN +      + +                                    
Sbjct: 166 VGCTNVGKSTFINRMIKEFSDETE------------------------------------ 189

Query: 180 GKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPR 235
                              +      G T   +  + + E+    + DTPGI    
Sbjct: 190 -----------------NVITTSHFPGTTLD-LIDIPLDEE--SSLYDTPGIINHH 225

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus} Length = 369

 Score = 76.5 bits (188), Expect = 9e-16
 Identities = 28/151 (18%), Positives = 52/151 (34%), Gaps = 19/151 (12%)

Query: 5   LKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLI-----NSKH 59
           L  + +  ++  +V+ + D           L +   +  P++LV NK DL+       K 
Sbjct: 62  LSMLHRIGESKALVVNIVDIFDFNGSFIPGLPRFAAD-NPILLVGNKADLLPRSVKYPKL 120

Query: 60  ESLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMV 119
              +     +      +V   +       G+ K++  +    +              V V
Sbjct: 121 LRWMRRMAEELGLCPVDVCLVSAAK--GIGMAKVMEAINRYREGGD-----------VYV 167

Query: 120 VGVPNVGKSSIINALRSSHMKKGKAVPILPT 150
           VG  NVGKS+ IN +      KG  +     
Sbjct: 168 VGCTNVGKSTFINRIIEEATGKGNVITTSYF 198

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus} Length = 369

 Score = 68.4 bits (167), Expect = 5e-13
 Identities = 21/65 (32%), Positives = 28/65 (43%), Gaps = 3/65 (4%)

Query: 171 VMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPG 230
           V VVG  NVGKS+ IN +      KG  +      G T      ++I  +    + DTPG
Sbjct: 165 VYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTL---DMIEIPLESGATLYDTPG 221

Query: 231 ISLPR 235
           I    
Sbjct: 222 IINHH 226

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 68.0 bits (165), Expect = 2e-12
 Identities = 63/456 (13%), Positives = 126/456 (27%), Gaps = 156/456 (34%)

Query: 6   KDI-----EKHLKNVDIVIEVHDS-RMPFTGR--NHLLQQSVQNIRPMVLVLNKRDLINS 57
           KDI     +  + N D   +V D  +   +    +H++         + L       + S
Sbjct: 19  KDILSVFEDAFVDNFD-CKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLF----WTLLS 73

Query: 58  KHESLIE---------------EKVRKE--QSHISEVIFTNCRNPNCKGVQKILPTLQHI 100
           K E +++                 ++ E  Q  +   ++   R+      Q         
Sbjct: 74  KQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAK----- 128

Query: 101 SDNMTRYH-----RTEVY----NTTVMVVGVPNVGKSS-IINALRSSHMKKGKAVPI--- 147
             N++R       R  +        V++ GV   GK+   ++   S  ++      I   
Sbjct: 129 -YNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWL 187

Query: 148 --------------LPTLQH----------------------ISDNMTRYHRTEVYNTTV 171
                         L  L +                      I   + R  +++ Y   +
Sbjct: 188 NLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL 247

Query: 172 MVVGVPNVGKSSIINAL----------RSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKP 221
           +V+   NV  +   NA           R     K     +        S+          
Sbjct: 248 LVLL--NVQNAKAWNAFNLSCKILLTTRF----KQVTDFLSAATTTHISLDHHSMTLTPD 301

Query: 222 -----LIYILDTPGISLPR----IDNLECGMRLAACATLQDHLVGEINIADYILFYLNRT 272
                L+  LD     LPR     +     + +A   +++D L                 
Sbjct: 302 EVKSLLLKYLDCRPQDLPREVLTTNPRRLSI-IAE--SIRDGL--------------ATW 344

Query: 273 GNYRYVDFFNLDEPSDDIVMLLAKAAIKKKWFKRAFDVSSNSVRMFPD------------ 320
            N+++V+   L    +  + +L + A  +K F R          +FP             
Sbjct: 345 DNWKHVNCDKLTTIIESSLNVL-EPAEYRKMFDRLS--------VFPPSAHIPTILLSLI 395

Query: 321 ----TGEVARIFIEHFRKGSFGSVMLDRDFLELDIS 352
                     + +    K S    ++++   E  IS
Sbjct: 396 WFDVIKSDVMVVVNKLHKYS----LVEKQPKESTIS 427

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* Length = 413

 Score = 55.1 bits (132), Expect = 1e-08
 Identities = 30/106 (28%), Positives = 39/106 (36%), Gaps = 9/106 (8%)

Query: 130 IINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIINALR 189
           I+N +    M+ G    I  T   ISD +     + +    V V G    GKSS IN LR
Sbjct: 38  ILNLIEL-RMRAGN---IQLTNSAISDALKEIDSSVL---NVAVTGETGSGKSSFINTLR 90

Query: 190 SSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPR 235
               ++  A   G    VT       K    P +   D PGI    
Sbjct: 91  GIGNEEEGAAKTG-VVEVTMERHP-YKHPNIPNVVFWDLPGIGSTN 134

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* Length = 413

 Score = 42.0 bits (98), Expect = 2e-04
 Identities = 23/83 (27%), Positives = 32/83 (38%), Gaps = 6/83 (7%)

Query: 65  EKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVVGVPN 124
           +K    +  IS+ I          G   I  T   ISD +     + +    V V G   
Sbjct: 25  KKFNTGRKIISQEILNLIELRMRAG--NIQLTNSAISDALKEIDSSVL---NVAVTGETG 79

Query: 125 VGKSSIINALR-SSHMKKGKAVP 146
            GKSS IN LR   + ++G A  
Sbjct: 80  SGKSSFINTLRGIGNEEEGAAKT 102

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A* Length = 262

 Score = 53.3 bits (128), Expect = 3e-08
 Identities = 22/102 (21%), Positives = 43/102 (42%), Gaps = 5/102 (4%)

Query: 150 TLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTR 209
           T + + +   +  + ++ + TV+V+G   VGKSS +N+L    + + + V V P      
Sbjct: 18  TQEKLIEFFGKLKQKDMNSMTVLVLGKGGVGKSSTVNSL----IGE-QVVRVSPFQAEGL 72

Query: 210 SVMSQVKISEKPLIYILDTPGISLPRIDNLECGMRLAACATL 251
             +   +      I I+DTPG+      N +    +      
Sbjct: 73  RPVMVSRTMGGFTINIIDTPGLVEAGYVNHQALELIKGFLVN 114

>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana} Length = 423

 Score = 48.9 bits (117), Expect = 1e-06
 Identities = 24/98 (24%), Positives = 39/98 (39%), Gaps = 16/98 (16%)

Query: 171 VMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTR-SVMSQVKISEKPLIYILDTP 229
           ++V G  NVGKSS +NAL    + +  ++ V   AG T   V   +++     + ++DTP
Sbjct: 37  IVVAGRRNVGKSSFMNAL----VGQNVSI-VSDYAGTTTDPVYKSMELHPIGPVTLVDTP 91

Query: 230 GISLPRIDNLECGMRLAACATLQDHLVGEINIADYILF 267
           G+       L       A              AD  + 
Sbjct: 92  GLDDVG--ELGRLRVEKARRVFYR--------ADCGIL 119

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A* Length = 270

 Score = 46.9 bits (111), Expect = 4e-06
 Identities = 16/62 (25%), Positives = 31/62 (50%), Gaps = 5/62 (8%)

Query: 170 TVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTP 229
           T++V+G   VGKSS +N++    + + + V + P        +   +      + I+DTP
Sbjct: 41  TILVMGKGGVGKSSTVNSI----IGE-RVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTP 95

Query: 230 GI 231
           G+
Sbjct: 96  GL 97

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8 Length = 301

 Score = 45.6 bits (109), Expect = 1e-05
 Identities = 20/114 (17%), Positives = 45/114 (39%), Gaps = 29/114 (25%)

Query: 40  QNIRPMVLVLNKRDLINSKHESLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQH 99
             +   V+V+NK DL +      + E        +  ++ T+ +     G++++   L+ 
Sbjct: 114 NELET-VMVINKMDLYDEDDLRKVRELEEIYSG-LYPIVKTSAKTG--MGIEELKEYLKG 169

Query: 100 ISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIINALR----------SSHMKKGK 143
                           +  + G+  VGKSS++NA+           S  +++G+
Sbjct: 170 --------------KIST-MAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGR 208

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis} Length = 436

 Score = 45.2 bits (108), Expect = 2e-05
 Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 15/64 (23%)

Query: 173 VVGVPNVGKSSIINAL----RSSHMKKGKAVPVGPKAGVTR-SVMSQVKISEKPLIYILD 227
           ++G PNVGKSS++NA+    R         V V   AG TR +V +    +++  + + D
Sbjct: 180 LIGRPNVGKSSLVNAMLGEER---------VIVSNVAGTTRDAVDTSFTYNQQEFVIV-D 229

Query: 228 TPGI 231
           T G+
Sbjct: 230 TAGM 233

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis} Length = 436

 Score = 39.8 bits (94), Expect = 9e-04
 Identities = 20/109 (18%), Positives = 48/109 (44%), Gaps = 11/109 (10%)

Query: 3   RGLKDIEKHLKNVDIVIEVHDSRMPFTGRN-HLLQQSVQNIRPMVLVLNKRDLINSKHES 61
           R LK I++     ++V  V D       ++  +   + +  + +V+V+NK D ++    +
Sbjct: 250 RALKAIDR----SEVVAVVLDGEEGIIEQDKRIAGYAHEAGKAVVIVVNKWDAVDKDEST 305

Query: 62  L--IEEKVRKEQSHIS--EVIFTNCRNPNCKGVQKILPTLQHISDNMTR 106
           +   EE +R     +    ++F +      K +  ++P +   S+N + 
Sbjct: 306 MKEFEENIRDHFQFLDYAPILFMSALTK--KRIHTLMPAIIKASENHSL 352

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8 Length = 190

 Score = 43.8 bits (104), Expect = 2e-05
 Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 10/62 (16%)

Query: 170 TVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTP 229
           T++  G  NVGKS++I  L       GK V  G + GVTR ++ +++        I+D P
Sbjct: 3   TIIFAGRSNVGKSTLIYRL------TGKKVRRGKRPGVTRKII-EIEWKNH---KIIDMP 52

Query: 230 GI 231
           G 
Sbjct: 53  GF 54

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 Length = 439

 Score = 45.2 bits (108), Expect = 2e-05
 Identities = 22/64 (34%), Positives = 32/64 (50%), Gaps = 15/64 (23%)

Query: 173 VVGVPNVGKSSIINAL----RSSHMKKGKAVPVGPKAGVTR-SVMSQVKISEKPLIYILD 227
           +VG PNVGKS++ NA+    R           V P  G TR  V  +V I  +  +++ D
Sbjct: 185 IVGRPNVGKSTLFNAILNKER---------ALVSPIPGTTRDPVDDEVFIDGRKYVFV-D 234

Query: 228 TPGI 231
           T G+
Sbjct: 235 TAGL 238

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 Length = 439

 Score = 40.6 bits (96), Expect = 5e-04
 Identities = 34/102 (33%), Positives = 47/102 (46%), Gaps = 21/102 (20%)

Query: 170 TVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRS-VMSQVKISEKPLIYILDT 228
           TV++VG PNVGKS++ N L    +KK KA+ V  + GVTR  V   V+   K    + DT
Sbjct: 3   TVLIVGRPNVGKSTLFNKL----VKKKKAI-VEDEEGVTRDPVQDTVEWYGKTFKLV-DT 56

Query: 229 PGISLPRIDNLECGMR---LAACATLQDHLVGEINIADYILF 267
            G+     D +   M+   L                AD +LF
Sbjct: 57  CGVFDNPQDIISQKMKEVTLNMIRE-----------ADLVLF 87

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus} Length = 302

 Score = 43.7 bits (104), Expect = 4e-05
 Identities = 29/131 (22%), Positives = 55/131 (41%), Gaps = 22/131 (16%)

Query: 14  NVDIVIEVHDSRMPFTGRN----HLLQQSVQNIRPMVLVLNKRDLINSKHESLIEEKVRK 69
           NVD VI V   +MP          L+      + P V+V NK DL+N + +  +E  +  
Sbjct: 79  NVDRVIIVETLKMPEFNNYLLDNMLVVYEYFKVEP-VIVFNKIDLLNEEEKKELERWISI 137

Query: 70  EQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSS 129
            +    +V+  + +    +G+ +++  L+                   ++ G   VGKSS
Sbjct: 138 YRDAGYDVLKVSAKTG--EGIDELVDYLE---------------GFICILAGPSGVGKSS 180

Query: 130 IINALRSSHMK 140
           I++ L    ++
Sbjct: 181 ILSRLTGEELR 191

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} Length = 357

 Score = 44.1 bits (104), Expect = 4e-05
 Identities = 21/96 (21%), Positives = 40/96 (41%), Gaps = 8/96 (8%)

Query: 136 SSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIINALRSSHMKK 195
           +S ++       L  L    + +      ++   TV++ G PNVGKS+++ AL ++  + 
Sbjct: 137 ASVLRDID--DRLRYLNKAREVLKDLPVVDLEIPTVVIAGHPNVGKSTLLKALTTAKPE- 193

Query: 196 GKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGI 231
                +      TR +             I+DTPG+
Sbjct: 194 -----IASYPFTTRGINVGQFEDGYFRYQIIDTPGL 224

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1 Length = 301

 Score = 42.8 bits (102), Expect = 8e-05
 Identities = 27/97 (27%), Positives = 42/97 (43%), Gaps = 14/97 (14%)

Query: 171 VMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPG 230
           V +VG PNVGKS+++N L        K  P+ P+   TR  +  +    +  I  +DTPG
Sbjct: 10  VAIVGKPNVGKSTLLNNLLGV-----KVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPG 64

Query: 231 ISLPRIDNLECGMRLAACATLQDHLVGEINIADYILF 267
           +  P  D L   M       L D         + +++
Sbjct: 65  LHKPM-DALGEFMDQEVYEALAD--------VNAVVW 92

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A Length = 172

 Score = 41.4 bits (98), Expect = 1e-04
 Identities = 25/63 (39%), Positives = 35/63 (55%), Gaps = 7/63 (11%)

Query: 170 TVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVM-SQVKISEKPLIYILDT 228
            V++ G PN GKSS++NAL      +  A+ V   AG TR V+   + I   PL  I+DT
Sbjct: 6   KVVIAGRPNAGKSSLLNAL----AGREAAI-VTDIAGTTRDVLREHIHIDGMPLH-IIDT 59

Query: 229 PGI 231
            G+
Sbjct: 60  AGL 62

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X Length = 301

 Score = 42.4 bits (101), Expect = 1e-04
 Identities = 24/104 (23%), Positives = 42/104 (40%), Gaps = 27/104 (25%)

Query: 171 VMVVGVPNVGKSSIINALRSSHMKKGKAVPVG-------PKAGVTRSVMSQVKISEKPLI 223
           + +VG PNVGKS+++N L            +G        KA  TR  +  +        
Sbjct: 11  IAIVGRPNVGKSTLLNKL------------LGQKISITSRKAQTTRHRIVGIHTEGAYQA 58

Query: 224 YILDTPGISLPRIDNLECGMRLAACATLQDHLVGEINIADYILF 267
             +DTPG+ +     +   M  AA +++ D         + ++F
Sbjct: 59  IYVDTPGLHMEEKRAINRLMNKAASSSIGD--------VELVIF 94

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus} Length = 161

 Score = 40.9 bits (97), Expect = 1e-04
 Identities = 30/101 (29%), Positives = 44/101 (43%), Gaps = 21/101 (20%)

Query: 170 TVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTR-SVMSQVKISEKPLIYILDT 228
            V++VG PNVGKSS+ N L    +KK  AV V    GVTR      V+      + + DT
Sbjct: 3   KVVIVGRPNVGKSSLFNRL----LKKRSAV-VADVPGVTRDLKEGVVETDRGRFLLV-DT 56

Query: 229 PGISLPRIDNLECGMRLAACATLQDHLVGEINI--ADYILF 267
            G+     D  E  ++             +  +  A+ +LF
Sbjct: 57  GGLWSG--DKWEKKIQEKV----------DRALEDAEVVLF 85

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8 Length = 307

 Score = 41.8 bits (99), Expect = 2e-04
 Identities = 27/115 (23%), Positives = 48/115 (41%), Gaps = 29/115 (25%)

Query: 40  QNIRPMVLVLNKRDLINSKHESLIEEKVRKEQSHIS-EVIFTNCRNPNCKGVQKILPTLQ 98
            +I+P ++ + K DLI  +      +   ++  +I  +V  T+ ++     +  I+P  Q
Sbjct: 116 NDIQP-IICITKMDLIEDQDTEDTIQAYAEDYRNIGYDVYLTSSKDQ--DSLADIIPHFQ 172

Query: 99  HISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIINALR----------SSHMKKGK 143
                           TTV   G   VGKSS++NA+           S H+ +GK
Sbjct: 173 D--------------KTTV-FAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGK 212

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V Length = 358

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 22/115 (19%), Positives = 43/115 (37%), Gaps = 29/115 (25%)

Query: 40  QNIRPMVLVLNKRDLINSKHESLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQH 99
             + P ++VLNK DL++ +    + E++   ++    V+  +       G++ +   L  
Sbjct: 159 LQVEP-LIVLNKIDLLDDEGMDFVNEQMDIYRNIGYRVLMVSSHTQ--DGLKPLEEALT- 214

Query: 100 ISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIINALR-----------SSHMKKGK 143
                             +  G   VGKSS++NAL            S+    G+
Sbjct: 215 --------------GRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQ 255

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A* Length = 308

 Score = 40.2 bits (95), Expect = 6e-04
 Identities = 37/107 (34%), Positives = 50/107 (46%), Gaps = 31/107 (28%)

Query: 171 VMVVGVPNVGKSSIINALRSSHMKKGKAVPVG-------PKAGVTRSVMSQVKISEKP-- 221
           V +VG PNVGKS+++N L            +G       PKAG TR  +  VK       
Sbjct: 13  VAIVGKPNVGKSTLLNNL------------LGTKVSIISPKAGTTRMRVLGVKNIPNEAQ 60

Query: 222 LIYILDTPGISLPR-IDNLECGMRLAACATLQDHLVGEINIADYILF 267
           +I++ DTPGI  P+  D L   M   A  +L++        AD ILF
Sbjct: 61  IIFL-DTPGIYEPKKSDVLGHSMVEIAKQSLEE--------ADVILF 98

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum} Length = 228

 Score = 39.4 bits (92), Expect = 9e-04
 Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 6/62 (9%)

Query: 170 TVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTP 229
           T+++ G PNVGKSS +N +  ++      V V   +  T+++       +     I+DTP
Sbjct: 31  TIILSGAPNVGKSSFMNIVSRAN------VDVQSYSFTTKNLYVGHFDHKLNKYQIIDTP 84

Query: 230 GI 231
           G+
Sbjct: 85  GL 86

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	352
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	100.0
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	100.0
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	99.89
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	99.88
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.88
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.87
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.86
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	99.81
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	99.74
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	99.72
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	99.69
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	99.48
4a9a_A	376	Ribosome-interacting GTPase 1; DRG-DFRP complex, r	99.4
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	99.31
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	99.2
1jal_A	363	YCHF protein; nucleotide-binding fold, structural	99.15
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.15
2ohf_A	396	Protein OLA1, GTP-binding protein 9; ATPase, GTPas	99.14
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	99.05
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	99.04
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	99.03
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.02
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	99.0
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	98.99
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	98.98
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	98.96
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	98.96
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	98.95
1wxq_A	397	GTP-binding protein; structural genomics, riken st	98.95
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	98.94
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	98.94
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	98.93
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	98.93
1xzp_A	482	Probable tRNA modification GTPase TRME; GTP-bindin	98.92
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	98.89
2dby_A	368	GTP-binding protein; GDP, structural genomics, NPP	98.88
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	98.88
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	98.88
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	98.87
2wji_A	165	Ferrous iron transport protein B homolog; membrane	98.86
1f5n_A	592	Interferon-induced guanylate-binding protein 1; GB	98.85
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	98.82
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	98.82
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	98.8
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	98.8
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	98.79
1lnz_A	342	SPO0B-associated GTP-binding protein; GTPase, OBG,	98.79
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	98.79
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	98.77
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	98.77
3geh_A	462	MNME, tRNA modification GTPase MNME; G protein, U3	98.74
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	98.74
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	98.72
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	98.72
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	98.71
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	98.7
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	98.69
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	98.69
1xzp_A	482	Probable tRNA modification GTPase TRME; GTP-bindin	98.67
3sjy_A	403	Translation initiation factor 2 subunit gamma; zin	98.64
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	98.64
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	98.6
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	98.59
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	98.58
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	98.58
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	98.57
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	98.57
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	98.56
2qpt_A	550	EH domain-containing protein-2; protein-nucleotide	98.56
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	98.55
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	98.55
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	98.55
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	98.54
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	98.54
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	98.54
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	98.53
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	98.53
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	98.53
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	98.53
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	98.52
1wb1_A	482	Translation elongation factor SELB; selenocysteine	98.52
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	98.51
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	98.51
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	98.51
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	98.51
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	98.51
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	98.5
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	98.49
2x2e_A	353	Dynamin-1; nitration, hydrolase, membrane fission,	98.48
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	98.48
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	98.48
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	98.48
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	98.48
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	98.47
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	98.47
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	98.47
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	98.47
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	98.47
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	98.47
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	98.46
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	98.46
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	98.46
3cb4_D	599	GTP-binding protein LEPA; GTPase, OB-fold, membran	98.46
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	98.46
1kk1_A	410	EIF2gamma; initiation of translation; HET: GNP; 1.	98.45
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	98.45
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	98.45
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	98.45
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	98.44
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	98.44
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	98.44
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	98.43
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	98.43
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	98.43
3qq5_A	423	Small GTP-binding protein; hydrogenase, H-cluster,	98.43
1s0u_A	408	EIF-2-gamma, translation initiation factor 2 gamma	98.43
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	98.42
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	98.42
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	98.42
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	98.42
3zvr_A	772	Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito	98.42
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	98.41
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	98.41
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	98.41
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	98.41
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	98.41
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	98.41
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	98.41
3geh_A	462	MNME, tRNA modification GTPase MNME; G protein, U3	98.4
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	98.4
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	98.4
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	98.39
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	98.39
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	98.39
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	98.39
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	98.39
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	98.39
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	98.39
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	98.39
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	98.39
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	98.39
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	98.39
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	98.39
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	98.39
2j69_A	695	Bacterial dynamin-like protein; FZO, FZL, GTPase,	98.38
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	98.38
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	98.38
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	98.38
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	98.38
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	98.38
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	98.38
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	98.38
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	98.38
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	98.38
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	98.37
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	98.37
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	98.37
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	98.37
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	98.37
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	98.37
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	98.37
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	98.37
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	98.36
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	98.36
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	98.36
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	98.36
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	98.36
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	98.36
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	98.36
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	98.35
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	98.35
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	98.34
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	98.34
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	98.34
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	98.34
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	98.34
2ged_A	193	SR-beta, signal recognition particle receptor beta	98.34
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	98.34
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	98.34
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	98.34
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	98.33
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	98.33
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	98.33
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	98.33
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	98.33
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	98.33
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	98.33
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	98.33
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	98.33
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	98.32
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	98.32
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	98.32
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	98.32
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	98.32
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	98.32
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	98.32
3qq5_A	423	Small GTP-binding protein; hydrogenase, H-cluster,	98.32
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	98.32
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	98.32
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	98.31
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	98.31
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	98.31
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	98.31
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	98.31
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	98.31
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	98.3
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	98.3
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	98.3
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	98.3
2ywe_A	600	GTP-binding protein LEPA; G domain, beta-barrel, f	98.29
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	98.29
1lnz_A	342	SPO0B-associated GTP-binding protein; GTPase, OBG,	98.29
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	98.29
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	98.29
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	98.28
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	98.28
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	98.28
3j2k_7	439	ERF3, eukaryotic polypeptide chain release factor	98.28
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	98.28
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	98.28
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	98.27
3izq_1	611	HBS1P, elongation factor 1 alpha-like protein; NO-	98.27
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	98.27
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	98.27
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	98.26
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	98.26
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	98.26
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	98.26
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	98.26
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	98.25
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	98.25
3tr5_A	528	RF-3, peptide chain release factor 3; protein synt	98.24
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	98.23
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	98.23
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	98.23
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	98.23
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	98.23
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	98.23
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	98.23
3j2k_7	439	ERF3, eukaryotic polypeptide chain release factor	98.23
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	98.22
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	98.22
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	98.22
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	98.22
2wji_A	165	Ferrous iron transport protein B homolog; membrane	98.22
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	98.22
2fh5_B	214	SR-beta, signal recognition particle receptor beta	98.21
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	98.21
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	98.21
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	98.21
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	98.21
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	98.21
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	98.21
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	98.21
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	98.21
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	98.19
2elf_A	370	Protein translation elongation factor 1A; tRNA, py	98.19
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	98.19
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	98.18
2c78_A	405	Elongation factor TU-A; hydrolase, GTPase, transla	98.18
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	98.18
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	98.17
3p26_A	483	Elongation factor 1 alpha-like protein; GTP/GDP bi	98.16
3p26_A	483	Elongation factor 1 alpha-like protein; GTP/GDP bi	98.15
1zun_B	434	Sulfate adenylate transferase, subunit 1/adenylyls	98.15
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	98.15
3q5d_A	447	Atlastin-1; G protein, GTPase, GDP/GTP binding, hy	98.15
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	98.15
3llu_A	196	RAS-related GTP-binding protein C; structural geno	98.14
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	98.14
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	98.14
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	98.13
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	98.13
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	98.13
3mca_A	592	HBS1, elongation factor 1 alpha-like protein; prot	98.13
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	98.12
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	98.12
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	98.12
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	98.11
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	98.11
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	98.11
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	98.1
4dkx_A	216	RAS-related protein RAB-6A; GTP binding fold, memb	98.09
1d2e_A	397	Elongation factor TU (EF-TU); G-protein, beta-barr	98.09
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	98.08
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	98.08
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	97.35
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	98.08
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	98.07
1g7s_A	594	Translation initiation factor IF2/EIF5B; translati	98.07
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	98.07
1nrj_B	218	SR-beta, signal recognition particle receptor beta	98.06
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	98.06
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	98.06
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	98.06
3izy_P	537	Translation initiation factor IF-2, mitochondrial;	98.06
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	98.06
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	98.05
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	98.04
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	98.04
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	98.03
3tr5_A	528	RF-3, peptide chain release factor 3; protein synt	98.01
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	98.01
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	98.0
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	97.99
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	97.98
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	97.98
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	97.98
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	97.97
2xex_A	693	Elongation factor G; GTPase, translation, biosynth	97.97
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	97.96
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	97.96
1zo1_I	501	IF2, translation initiation factor 2; E. coli, rib	97.95
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	97.95
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	97.93
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	97.93
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	97.93
1wb1_A	482	Translation elongation factor SELB; selenocysteine	97.93
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	97.16
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	97.92
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	97.92
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	97.92
1jny_A	435	EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-	97.91
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	97.91
2c78_A	405	Elongation factor TU-A; hydrolase, GTPase, transla	97.91
3zvr_A	772	Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito	97.89
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	97.88
3llu_A	196	RAS-related GTP-binding protein C; structural geno	97.88
1f60_A	458	Elongation factor EEF1A; protein-protein complex,	97.88
1d2e_A	397	Elongation factor TU (EF-TU); G-protein, beta-barr	97.88
4dkx_A	216	RAS-related protein RAB-6A; GTP binding fold, memb	97.87
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	97.86
3avx_A	1289	Elongation factor TS, elongation factor TU, linke	97.86
2h5e_A	529	Peptide chain release factor RF-3; beta barrel, tr	97.85
1zun_B	434	Sulfate adenylate transferase, subunit 1/adenylyls	97.84
3sjy_A	403	Translation initiation factor 2 subunit gamma; zin	97.84
2elf_A	370	Protein translation elongation factor 1A; tRNA, py	97.81
3izy_P	537	Translation initiation factor IF-2, mitochondrial;	97.8
2j69_A	695	Bacterial dynamin-like protein; FZO, FZL, GTPase,	97.79
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	97.79
2fh5_B	214	SR-beta, signal recognition particle receptor beta	97.78
3izq_1	611	HBS1P, elongation factor 1 alpha-like protein; NO-	97.77
1r5b_A	467	Eukaryotic peptide chain release factor GTP-bindi	97.76
1dar_A	691	EF-G, elongation factor G; ribosomal translocase,	97.75
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	97.75
1kk1_A	410	EIF2gamma; initiation of translation; HET: GNP; 1.	97.74
1jny_A	435	EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-	97.73
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	97.69
1zo1_I	501	IF2, translation initiation factor 2; E. coli, rib	97.69
3mca_A	592	HBS1, elongation factor 1 alpha-like protein; prot	97.69
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	97.69
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	97.68
1f60_A	458	Elongation factor EEF1A; protein-protein complex,	97.68
1s0u_A	408	EIF-2-gamma, translation initiation factor 2 gamma	97.66
2h5e_A	529	Peptide chain release factor RF-3; beta barrel, tr	97.66
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	97.64
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	97.62
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	97.61
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	97.6
2ywe_A	600	GTP-binding protein LEPA; G domain, beta-barrel, f	97.59
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	97.58
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	97.58
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	97.57
2rdo_7	704	EF-G, elongation factor G; elongation factor G, EF	97.57
3l82_B	227	F-box only protein 4; TRFH domain, helix, GTPase d	97.55
3cb4_D	599	GTP-binding protein LEPA; GTPase, OB-fold, membran	97.55
1r5b_A	467	Eukaryotic peptide chain release factor GTP-bindi	97.53
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	97.5
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	97.5
2xex_A	693	Elongation factor G; GTPase, translation, biosynth	97.48
1dar_A	691	EF-G, elongation factor G; ribosomal translocase,	97.48
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	97.45
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	97.44
3avx_A	1289	Elongation factor TS, elongation factor TU, linke	97.42
3vqt_A	548	RF-3, peptide chain release factor 3; translation,	97.42
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	97.38
1wxq_A	397	GTP-binding protein; structural genomics, riken st	97.36
2rdo_7	704	EF-G, elongation factor G; elongation factor G, EF	97.33
3j25_A	638	Tetracycline resistance protein TETM; antibiotic r	97.32
1g7s_A	594	Translation initiation factor IF2/EIF5B; translati	97.3
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	97.26
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	97.25
2hf9_A	226	Probable hydrogenase nickel incorporation protein	97.21
2x2e_A	353	Dynamin-1; nitration, hydrolase, membrane fission,	97.16
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	97.13
3vqt_A	548	RF-3, peptide chain release factor 3; translation,	97.08
1n0u_A	842	EF-2, elongation factor 2; G-protein, CIS-proline,	97.08
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	97.07
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	97.06
2hf9_A	226	Probable hydrogenase nickel incorporation protein	97.06
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	97.03
1cip_A	353	Protein (guanine nucleotide-binding protein alpha-	97.0
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	96.98
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	96.96
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	96.94
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	96.88
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	96.87
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	96.83
1ko7_A	314	HPR kinase/phosphatase; protein kinase, phosphotra	96.81
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	96.68
2qpt_A	550	EH domain-containing protein-2; protein-nucleotide	96.67
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	96.65
4fn5_A	709	EF-G 1, elongation factor G 1; translation, transl	96.63
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	96.56
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	96.56
1nrj_B	218	SR-beta, signal recognition particle receptor beta	96.52
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	96.5
2ged_A	193	SR-beta, signal recognition particle receptor beta	96.47
4ido_A	457	Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HE	96.35
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	96.3
2xtz_A	354	Guanine nucleotide-binding protein alpha-1 subuni;	96.24
3j25_A	638	Tetracycline resistance protein TETM; antibiotic r	96.16
1azs_C	402	GS-alpha; complex (lyase/hydrolase), hydrolase, si	96.01
3ohm_A	327	Guanine nucleotide-binding protein G(Q) subunit A;	96.0
4fid_A	340	G protein alpha subunit; RAS-like domain, all-heli	95.81
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	95.79
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	95.68
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	95.65
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	95.4
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	95.38
1n0u_A	842	EF-2, elongation factor 2; G-protein, CIS-proline,	95.38
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	95.35
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	95.27
4fn5_A	709	EF-G 1, elongation factor G 1; translation, transl	95.26
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	95.23
2dby_A	368	GTP-binding protein; GDP, structural genomics, NPP	95.22
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	95.1
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	95.08
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	94.97
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	94.93
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	94.81
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	94.75
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	94.71
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	94.69
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	94.68
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	94.66
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	94.54
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	94.54
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	94.53
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	94.47
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	94.28
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	94.18
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	94.18
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	94.14
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	94.1
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	94.08
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	94.06
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	94.02
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	94.01
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	94.0
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	93.97
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	93.96
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	93.95
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	93.95
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	93.93
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	93.91
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	93.91
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	93.91
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	93.9
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	93.89
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	93.88
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	93.83
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	93.81
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	93.78
1sgw_A	214	Putative ABC transporter; structural genomics, P p	93.76
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	93.74
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	93.73
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	93.71
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	93.71
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	93.7
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	93.68
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	93.68
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	93.65
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	93.65
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	93.6
1b0u_A	262	Histidine permease; ABC transporter, transport pro	93.6
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	93.57
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	93.55
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	93.51
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	93.49
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	93.49
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	93.48
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	93.47
1g6h_A	257	High-affinity branched-chain amino acid transport	93.46
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	93.44
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	93.44
2eyu_A	261	Twitching motility protein PILT; pilus retraction	93.44
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	93.44
2ghi_A	260	Transport protein; multidrug resistance protein, M	93.4
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	93.38
2vli_A	183	Antibiotic resistance protein; transferase, tunica	93.38
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	93.38
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	93.37
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	93.37
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	93.36
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	93.35
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	93.34
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	93.33
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	93.28
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	93.28

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=100.00  E-value=5e-47  Score=348.23  Aligned_cols=272  Identities=25%  Similarity=0.454  Sum_probs=221.8

Q ss_pred             ChhHHHHHHHHhhccCEEEEEEcCCCCCCCcCHHHHHHHhCCCCEEEEEEcccCCCccchHHHHHHHHhhcCCCCcEEEe
Q psy15351          1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHESLIEEKVRKEQSHISEVIFT   80 (352)
Q Consensus         1 m~~~~~~~~~~i~~aD~vl~VvDar~p~~~~~~~l~~~l~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~v~~i   80 (352)
                      |.++++++++.++++|+|++|+|||+|.++.++.+.+++ .++|.++|+||+||++.+..+.|.+++++.+.+   ++++
T Consensus        10 m~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l-~~kp~ilVlNK~DL~~~~~~~~~~~~~~~~g~~---~i~i   85 (282)
T 1puj_A           10 MAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL-KNKPRIMLLNKADKADAAVTQQWKEHFENQGIR---SLSI   85 (282)
T ss_dssp             TTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC-SSSCEEEEEECGGGSCHHHHHHHHHHHHTTTCC---EEEC
T ss_pred             HHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH-CCCCEEEEEECcccCCHHHHHHHHHHHHhcCCc---EEEE
Confidence            789999999999999999999999999999999998888 689999999999999977778899999766765   9999


Q ss_pred             ecCCCCCCCHHHHHHHHHHHhhhccccccccccceeEEEeccCCCCchhHHHHHhhhhcccCCCCCCCcchhhhhccccc
Q psy15351         81 NCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTR  160 (352)
Q Consensus        81 Sa~~~~~~gi~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~nvgksslin~l~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (352)
                      ||.++  .|+++|++.+.+.++....                          ....    +                   
T Consensus        86 SA~~~--~gi~~L~~~i~~~l~~~~~--------------------------~~~~----~-------------------  114 (282)
T 1puj_A           86 NSVNG--QGLNQIVPASKEILQEKFD--------------------------RMRA----K-------------------  114 (282)
T ss_dssp             CTTTC--TTGGGHHHHHHHHHHHHHH--------------------------HHHH----T-------------------
T ss_pred             ECCCc--ccHHHHHHHHHHHHHHHHH--------------------------HHHh----c-------------------
Confidence            99999  9999999998877653210                          0000    0                   


Q ss_pred             cccccCcceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCCcEEEEeCCCCCCCCCCCHH
Q psy15351        161 YHRTEVYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE  240 (352)
Q Consensus       161 ~~~~~~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~~~~~~~~~  240 (352)
                        ...+.+++++++|.||||||||+|+|.+     ...+.+++.||+|++.+ .+..  +..+.++||||+..+...+.+
T Consensus       115 --~~~~~~~~v~~vG~~nvGKSsliN~l~~-----~~~~~~~~~~g~T~~~~-~~~~--~~~~~l~DtpG~~~~~~~~~~  184 (282)
T 1puj_A          115 --GVKPRAIRALIIGIPNVGKSTLINRLAK-----KNIAKTGDRPGITTSQQ-WVKV--GKELELLDTPGILWPKFEDEL  184 (282)
T ss_dssp             --TCCCCCEEEEEEESTTSSHHHHHHHHHT-----SCCC------------C-CEEE--TTTEEEEECCCCCCSCCCCHH
T ss_pred             --CCCCCCceEEEEecCCCchHHHHHHHhc-----CceeecCCCCCeeeeeE-EEEe--CCCEEEEECcCcCCCCCCCHH
Confidence              0123568999999999999999999997     56688999999999986 3444  347999999999999888878


Q ss_pred             HHHHHHHHhhhhhhccchhhhhHhHHhhhcCCCCCcccccccCCCCCccHHHHHHHHHHHhccccccccccCCcccCCCC
Q psy15351        241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIKKKWFKRAFDVSSNSVRMFPD  320 (352)
Q Consensus       241 ~~~~l~~~~~i~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~a~~~g~~~~~~~~~~g~~~~~~d  320 (352)
                      ..+++++++++.+..+++..++.+++..+++..+..+...|+++.+.++..++|+.+|+++|++.++         |.||
T Consensus       185 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~l~~~y~~~~~~~~~~~~l~~~a~~~g~~~kg---------g~~d  255 (282)
T 1puj_A          185 VGLRLAVTGAIKDSIINLQDVAVFGLRFLEEHYPERLKERYGLDEIPEDIAELFDAIGEKRGCLMSG---------GLIN  255 (282)
T ss_dssp             HHHHHHHHTSSCTTSSCHHHHHHHHHHHHHHHCHHHHHHHTTCSSCCSSHHHHHHHHHHHHTCBCST---------TCBC
T ss_pred             HHHHHHHhCCcchhhCCHHHHHHHHHHHHHHhChHHHHHHcCCCCCCCCHHHHHHHHHHHhCCcccC---------Cccc
Confidence            8889999999999888988999999988888766667788999766667899999999999999865         6899


Q ss_pred             HHHHHHHHHHHHhCCCCcceecCccc
Q psy15351        321 TGEVARIFIEHFRKGSFGSVMLDRDF  346 (352)
Q Consensus       321 ~~~a~~~~l~~~~~g~l~~~~~~~~~  346 (352)
                      +.+||+.+|+||++|+||+|++|+|.
T Consensus       256 ~~~aa~~~l~d~~~Gklg~~~l~~~~  281 (282)
T 1puj_A          256 YDKTTEVIIRDIRTEKFGRLSFEQPT  281 (282)
T ss_dssp             HHHHHHHHHHHHHTTTTCSCCSCCCC
T ss_pred             HHHHHHHHHHHHHcCCCCceECCCCC
Confidence            99999999999999999999999764

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=100.00  E-value=1.2e-40  Score=302.68  Aligned_cols=241  Identities=24%  Similarity=0.338  Sum_probs=189.2

Q ss_pred             ChhHHHHHHHHhhccCEEEEEEcCCCCCCCcCHHHHHHHhCCCCEEEEEEcccCCCccchHHHHHHHHhhcCCCCcEEEe
Q psy15351          1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHESLIEEKVRKEQSHISEVIFT   80 (352)
Q Consensus         1 m~~~~~~~~~~i~~aD~vl~VvDar~p~~~~~~~l~~~l~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~v~~i   80 (352)
                      |.++++++++.++++|+|++|+|||+|.++.++.+. ++  ++|.++|+||+||++++..+.|.+++++.+.+   + ++
T Consensus         8 m~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~l~-ll--~k~~iivlNK~DL~~~~~~~~~~~~~~~~g~~---v-~i   80 (262)
T 3cnl_A            8 IEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYGVD-FS--RKETIILLNKVDIADEKTTKKWVEFFKKQGKR---V-IT   80 (262)
T ss_dssp             -CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTTSC-CT--TSEEEEEEECGGGSCHHHHHHHHHHHHHTTCC---E-EE
T ss_pred             HHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChHHH-hc--CCCcEEEEECccCCCHHHHHHHHHHHHHcCCe---E-EE
Confidence            789999999999999999999999999999887776 55  89999999999999987778999999877776   7 99


Q ss_pred             ecCCCCCCCHHHHHHHHHHHhhhccccccccccceeEEEeccCCCCchhHHHHHhhhhcccCCCCCCCcchhhhhccccc
Q psy15351         81 NCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTR  160 (352)
Q Consensus        81 Sa~~~~~~gi~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~nvgksslin~l~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (352)
                      ||.++  .|+++|++.+.+.                                                            
T Consensus        81 Sa~~~--~gi~~L~~~l~~~------------------------------------------------------------   98 (262)
T 3cnl_A           81 THKGE--PRKVLLKKLSFDR------------------------------------------------------------   98 (262)
T ss_dssp             CCTTS--CHHHHHHHHCCCT------------------------------------------------------------
T ss_pred             ECCCC--cCHHHHHHHHHHh------------------------------------------------------------
Confidence            99999  9998887654210                                                            


Q ss_pred             cccccCcceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCCcEEEEeCCCCCCCCC-CCH
Q psy15351        161 YHRTEVYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRI-DNL  239 (352)
Q Consensus       161 ~~~~~~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~~~~~-~~~  239 (352)
                             -++++++|.||||||||+|+|.+     .....+++.||+|+..+ .+..  +..+.++||||+..+.. .+.
T Consensus        99 -------~~~v~~vG~~~vGKSslin~l~~-----~~~~~~~~~~g~T~~~~-~~~~--~~~~~l~DtpG~~~~~~~~~~  163 (262)
T 3cnl_A           99 -------LARVLIVGVPNTGKSTIINKLKG-----KRASSVGAQPGITKGIQ-WFSL--ENGVKILDTPGILYKNIFSED  163 (262)
T ss_dssp             -------TCEEEEEESTTSSHHHHHHHHHT-----TCC----------CCSC-EEEC--TTSCEEESSCEECCCCCCSHH
T ss_pred             -------hhheEEeCCCCCCHHHHHHHHhc-----ccccccCCCCCCccceE-EEEe--CCCEEEEECCCcccCcCCCCh
Confidence                   05799999999999999999997     45567899999999875 3333  34689999999999876 544


Q ss_pred             HHHHHHHHHhhhhhhccchhhhhHhHHhhhcCCCCCcccccccCCCCCccHHHHHHHHHHHhccccccccccCCcccCCC
Q psy15351        240 ECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIKKKWFKRAFDVSSNSVRMFP  319 (352)
Q Consensus       240 ~~~~~l~~~~~i~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~a~~~g~~~~~~~~~~g~~~~~~  319 (352)
                      +.+         .+..++++.++.+++..+++..+..+...|+++.  .+ .++|+.+|+++|++.++         |.|
T Consensus       164 ~~~---------~~~~~d~~~~~~~~~~~l~~~~~~~l~~~y~i~~--~d-~~~l~~ia~~~g~~~kg---------g~~  222 (262)
T 3cnl_A          164 LAA---------KLLLVGSLPVERIEDQRIFERAFEIFARSIGIES--SF-SEFFEDFARKRGLLKKG---------GVP  222 (262)
T ss_dssp             HHH---------HHHHTTSSCGGGCCCHHHHHHHHHHHHHHHTCCC--CH-HHHHHHHHHHTTCBCGG---------GCB
T ss_pred             hhc---------ccccCCHHHHHHHHHHHHHHhCHHHHHHHcCcCC--Cc-HHHHHHHHHHhCCccCC---------Ccc
Confidence            432         3455567777888887777655445677899863  34 78999999999998764         589


Q ss_pred             CHHHHHHHHHHHHhCCCCcceecCccc
Q psy15351        320 DTGEVARIFIEHFRKGSFGSVMLDRDF  346 (352)
Q Consensus       320 d~~~a~~~~l~~~~~g~l~~~~~~~~~  346 (352)
                      |+.+||+.+|++|++|+||+|++|++.
T Consensus       223 d~~~aa~~~l~d~~~g~l~~~~l~~~~  249 (262)
T 3cnl_A          223 DIERALMLFFTEVAQGKAGRVSFERPE  249 (262)
T ss_dssp             CHHHHHHHHHHHHHTTTTCSCCSCCTT
T ss_pred             cHHHHHHHHHHHHHcCCCCceECCCCc
Confidence            999999999999999999999999764

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=99.89  E-value=7.4e-23  Score=194.49  Aligned_cols=161  Identities=20%  Similarity=0.247  Sum_probs=122.5

Q ss_pred             HHHHHHHHh-hccCEEEEEEcCCCCCCCcCHHHHHHHhCCCCEEEEEEcccCCCccc----hHHHHHH-HHhhcCCCCcE
Q psy15351          4 GLKDIEKHL-KNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKH----ESLIEEK-VRKEQSHISEV   77 (352)
Q Consensus         4 ~~~~~~~~i-~~aD~vl~VvDar~p~~~~~~~l~~~l~~~k~~ilVlNK~Dl~~~~~----~~~~~~~-~~~~~~~~~~v   77 (352)
                      .++++.+.+ +.+|++++|+|++++.++..+.+.+++ .++|+++|+||+||++.+.    ..+|... +++.|....++
T Consensus        60 ~f~~~L~~~~~~~~lil~VvD~~d~~~s~~~~l~~~l-~~~piilV~NK~DLl~~~~~~~~~~~~l~~~~~~~g~~~~~v  138 (369)
T 3ec1_A           60 DFLSMLHRIGESKALVVNIVDIFDFNGSFIPGLPRFA-ADNPILLVGNKADLLPRSVKYPKLLRWMRRMAEELGLCPVDV  138 (369)
T ss_dssp             HHHHHHHHHHHHCCEEEEEEETTCSGGGCCSSHHHHC-TTSCEEEEEECGGGSCTTCCHHHHHHHHHHHHHTTTCCCSEE
T ss_pred             HHHHHHHHhhccCcEEEEEEECCCCCCchhhHHHHHh-CCCCEEEEEEChhcCCCccCHHHHHHHHHHHHHHcCCCcccE
Confidence            344555444 888999999999999888888888887 5899999999999987642    3455443 45556533368


Q ss_pred             EEeecCCCCCCCHHHHHHHHHHHhhhccccccccccceeEEEeccCCCCchhHHHHHhhhhcccCCCCCCCcchhhhhcc
Q psy15351         78 IFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDN  157 (352)
Q Consensus        78 ~~iSa~~~~~~gi~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~nvgksslin~l~~~~~~~~~~~~~~~~~~~~~~~  157 (352)
                      +++||+++  +|+++|++.+.++..                                                       
T Consensus       139 ~~iSA~~g--~gi~~L~~~I~~~~~-------------------------------------------------------  161 (369)
T 3ec1_A          139 CLVSAAKG--IGMAKVMEAINRYRE-------------------------------------------------------  161 (369)
T ss_dssp             EECBTTTT--BTHHHHHHHHHHHHT-------------------------------------------------------
T ss_pred             EEEECCCC--CCHHHHHHHHHhhcc-------------------------------------------------------
Confidence            99999999  999999988765431                                                       


Q ss_pred             ccccccccCcceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCCcEEEEeCCCCCCCC
Q psy15351        158 MTRYHRTEVYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPR  235 (352)
Q Consensus       158 ~~~~~~~~~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~~~~  235 (352)
                                ..+++++|.||||||||+|+|++........+.+++.||||++... +..  +..+.++||||+..+.
T Consensus       162 ----------~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~~~-~~~--~~~~~liDtPG~~~~~  226 (369)
T 3ec1_A          162 ----------GGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIE-IPL--ESGATLYDTPGIINHH  226 (369)
T ss_dssp             ----------TSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEEEE-EEC--STTCEEEECCSCCCCS
T ss_pred             ----------cCcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEeeEE-EEe--CCCeEEEeCCCcCcHH
Confidence                      2358999999999999999999731111246788999999998753 333  2358999999998763

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=99.88  E-value=1.7e-22  Score=191.81  Aligned_cols=161  Identities=20%  Similarity=0.242  Sum_probs=115.7

Q ss_pred             HHHHHHHHh-hccCEEEEEEcCCCCCCCcCHHHHHHHhCCCCEEEEEEcccCCCcc----chHHHHHH-HHhhcCCCCcE
Q psy15351          4 GLKDIEKHL-KNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSK----HESLIEEK-VRKEQSHISEV   77 (352)
Q Consensus         4 ~~~~~~~~i-~~aD~vl~VvDar~p~~~~~~~l~~~l~~~k~~ilVlNK~Dl~~~~----~~~~~~~~-~~~~~~~~~~v   77 (352)
                      .++++.+.+ ..+|++++|+|++++..+..+.+.+++ .++|+++|+||+||++..    ...+|... +++.+....++
T Consensus        58 ~f~~~l~~i~~~~~~il~VvD~~d~~~~~~~~l~~~~-~~~p~ilV~NK~DL~~~~~~~~~~~~~l~~~~~~~g~~~~~v  136 (368)
T 3h2y_A           58 DFLRILNGIGKSDALVVKIVDIFDFNGSWLPGLHRFV-GNNKVLLVGNKADLIPKSVKHDKVKHWMRYSAKQLGLKPEDV  136 (368)
T ss_dssp             HHHHHHHHHHHSCCEEEEEEETTSHHHHCCTTHHHHS-SSSCEEEEEECGGGSCTTSCHHHHHHHHHHHHHHTTCCCSEE
T ss_pred             HHHHHHHHHhccCcEEEEEEECCCCcccHHHHHHHHh-CCCcEEEEEEChhcCCcccCHHHHHHHHHHHHHHcCCCcccE
Confidence            345555544 456699999999998777777777776 589999999999998764    24456443 34456532358


Q ss_pred             EEeecCCCCCCCHHHHHHHHHHHhhhccccccccccceeEEEeccCCCCchhHHHHHhhhhcccCCCCCCCcchhhhhcc
Q psy15351         78 IFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDN  157 (352)
Q Consensus        78 ~~iSa~~~~~~gi~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~nvgksslin~l~~~~~~~~~~~~~~~~~~~~~~~  157 (352)
                      +.+||+++  .|+++|++.+.+..+                                                       
T Consensus       137 ~~iSA~~g--~gi~~L~~~l~~~~~-------------------------------------------------------  159 (368)
T 3h2y_A          137 FLISAAKG--QGIAELADAIEYYRG-------------------------------------------------------  159 (368)
T ss_dssp             EECCTTTC--TTHHHHHHHHHHHHT-------------------------------------------------------
T ss_pred             EEEeCCCC--cCHHHHHhhhhhhcc-------------------------------------------------------
Confidence            99999999  999999988764321                                                       


Q ss_pred             ccccccccCcceEEEEeCCCCCChHHHHHHHhCCCCCC-CCceecCCCCCceeEeeeeEEecCCCcEEEEeCCCCCCCC
Q psy15351        158 MTRYHRTEVYNTTVMVVGVPNVGKSSIINALRSSHMKK-GKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPR  235 (352)
Q Consensus       158 ~~~~~~~~~~~~~v~i~G~pnvGKStliN~l~~~~~~~-~~~~~~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~~~~  235 (352)
                                ..+++++|.||||||||+|+|.+..... ...+.+++.||||++.+. +.+.  ..+.++||||+..+.
T Consensus       160 ----------~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~-~~~~--~~~~liDtPG~~~~~  225 (368)
T 3h2y_A          160 ----------GKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLID-IPLD--EESSLYDTPGIINHH  225 (368)
T ss_dssp             ----------TSCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEE-EESS--SSCEEEECCCBCCTT
T ss_pred             ----------cceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEE-EEec--CCeEEEeCCCcCcHH
Confidence                      2458999999999999999999742211 235678999999998753 3332  248999999998764

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.88  E-value=3.1e-22  Score=194.58  Aligned_cols=164  Identities=22%  Similarity=0.251  Sum_probs=114.5

Q ss_pred             HHHHHHHHhhccCEEEEEEcCCCCCCCcCHHHHHHHh-CCCCEEEEEEcccCCCccchHHHHHHHHhhcCCCCcEEEeec
Q psy15351          4 GLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQ-NIRPMVLVLNKRDLINSKHESLIEEKVRKEQSHISEVIFTNC   82 (352)
Q Consensus         4 ~~~~~~~~i~~aD~vl~VvDar~p~~~~~~~l~~~l~-~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~v~~iSa   82 (352)
                      ..+++..+++.+|++|+|+|++++.+..+..+.++++ .++|+++|+||+|+.+...  ...+++ +.+..  +++.+||
T Consensus        72 ~~~~~~~~~~~ad~il~vvD~~~~~~~~d~~~~~~l~~~~~pvilv~NK~D~~~~~~--~~~~~~-~lg~~--~~~~iSA  146 (436)
T 2hjg_A           72 IRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNTEMRA--NIYDFY-SLGFG--EPYPISG  146 (436)
T ss_dssp             HHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHTTCCSCEEEEEECCCC-------CCCSSG-GGSSC--CCEECBT
T ss_pred             HHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccCccchh--hHHHHH-HcCCC--CeEEEeC
Confidence            3456677899999999999999988877777777776 6899999999999975431  111222 33443  5899999


Q ss_pred             CCCCCCCHHHHHHHHHHHhhhccccccccccceeEEEeccCCCCchhHHHHHhhhhcccCCCCCCCcchhhhhccccccc
Q psy15351         83 RNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYH  162 (352)
Q Consensus        83 ~~~~~~gi~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~nvgksslin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (352)
                      +++  .|+.+|++++.+.+++.+.                                                       .
T Consensus       147 ~~g--~gv~~L~~~i~~~l~~~~~-------------------------------------------------------~  169 (436)
T 2hjg_A          147 THG--LGLGDLLDAVAEHFKNIPE-------------------------------------------------------T  169 (436)
T ss_dssp             TTT--BTHHHHHHHHHHTGGGCCS-------------------------------------------------------S
T ss_pred             cCC--CChHHHHHHHHHhcCcccc-------------------------------------------------------c
Confidence            999  9999999998876653210                                                       0


Q ss_pred             cccCcceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCCcEEEEeCCCCCCC
Q psy15351        163 RTEVYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLP  234 (352)
Q Consensus       163 ~~~~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~~~  234 (352)
                      ......++|+++|.||||||||+|+|++     .....+++.||+|++.........+..+.++||||+...
T Consensus       170 ~~~~~~~ki~lvG~~nvGKSSLin~l~~-----~~~~~~~~~~gtT~d~~~~~~~~~~~~~~l~DT~G~~~~  236 (436)
T 2hjg_A          170 KYNEEVIQFCLIGRPNVGKSSLVNAMLG-----EERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKK  236 (436)
T ss_dssp             CCCTTCEEEEEECSTTSSHHHHHHHHHT-----STTEEEC---------CCEEEEETTEEEEETTHHHHTCB
T ss_pred             cccccCcEEEEEcCCCCCHHHHHHHHhC-----CCceeecCCCCceeeeeEEEEEECCeEEEEEECCCcCcC
Confidence            0113468999999999999999999997     456678999999999765444445667999999999764

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.87  E-value=2.4e-21  Score=189.37  Aligned_cols=163  Identities=22%  Similarity=0.266  Sum_probs=114.6

Q ss_pred             HHHHHHHhhccCEEEEEEcCCCCCCCcCHHHHHHHh-CCCCEEEEEEcccCCCccchHHHHHHHHhhcCCCCcEEEeecC
Q psy15351          5 LKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQ-NIRPMVLVLNKRDLINSKHESLIEEKVRKEQSHISEVIFTNCR   83 (352)
Q Consensus         5 ~~~~~~~i~~aD~vl~VvDar~p~~~~~~~l~~~l~-~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~v~~iSa~   83 (352)
                      .+++...++.+|++|+|+|++.++...+..+.++++ .++|+++|+||+|+....  ..+.+++ ..+..  +++.+||+
T Consensus        93 ~~~~~~~~~~ad~il~VvD~~~~~~~~d~~l~~~l~~~~~pvilV~NK~D~~~~~--~~~~e~~-~lg~~--~~~~iSA~  167 (456)
T 4dcu_A           93 RQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNTEMR--ANIYDFY-SLGFG--EPYPISGT  167 (456)
T ss_dssp             HHHHHHHHHHCSEEEEEEESSSCSCHHHHHHHHHHTTCCSCEEEEEECC-----------CCSG-GGSSS--SEEECCTT
T ss_pred             HHHHHhhHhhCCEEEEEEeCCCCCChHHHHHHHHHHHcCCCEEEEEECccchhhh--hhHHHHH-HcCCC--ceEEeecc
Confidence            445677889999999999999988888888888776 689999999999987543  2222222 33433  57899999


Q ss_pred             CCCCCCHHHHHHHHHHHhhhccccccccccceeEEEeccCCCCchhHHHHHhhhhcccCCCCCCCcchhhhhcccccccc
Q psy15351         84 NPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHR  163 (352)
Q Consensus        84 ~~~~~gi~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~nvgksslin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (352)
                      ++  .|+.+|++.+.+.++....                                                       ..
T Consensus       168 ~g--~gv~~L~~~i~~~l~~~~~-------------------------------------------------------~~  190 (456)
T 4dcu_A          168 HG--LGLGDLLDAVAEHFKNIPE-------------------------------------------------------TK  190 (456)
T ss_dssp             TC--TTHHHHHHHHHTTGGGSCS-------------------------------------------------------SC
T ss_pred             cc--cchHHHHHHHHhhcccccc-------------------------------------------------------cc
Confidence            99  9999999998765542110                                                       00


Q ss_pred             ccCcceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCCcEEEEeCCCCCCC
Q psy15351        164 TEVYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLP  234 (352)
Q Consensus       164 ~~~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~~~  234 (352)
                      .....++|+++|.||||||||+|+|.+     .....+++.||+|++.........+..+.++||||+...
T Consensus       191 ~~~~~~ki~ivG~~~vGKSslin~l~~-----~~~~~~~~~~gtt~~~~~~~~~~~~~~~~l~DT~G~~~~  256 (456)
T 4dcu_A          191 YNEEVIQFCLIGRPNVGKSSLVNAMLG-----EERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKK  256 (456)
T ss_dssp             CCTTCEEEEEECSTTSSHHHHHHHHHT-----STTEEECC------CTTSEEEEETTEEEEETTGGGTTTB
T ss_pred             cccccceeEEecCCCCCHHHHHHHHhC-----CCccccCCCCCeEEEEEEEEEEECCceEEEEECCCCCcC
Confidence            123568999999999999999999997     456789999999999765444445668999999999864

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.86  E-value=2.9e-21  Score=187.87  Aligned_cols=168  Identities=20%  Similarity=0.231  Sum_probs=118.5

Q ss_pred             HHHHHHHhhccCEEEEEEcCCCCCCCcCHHHHHHHh-CCCCEEEEEEcccCCCccchHHHHHHHHhhcCCCCcEEEeecC
Q psy15351          5 LKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQ-NIRPMVLVLNKRDLINSKHESLIEEKVRKEQSHISEVIFTNCR   83 (352)
Q Consensus         5 ~~~~~~~i~~aD~vl~VvDar~p~~~~~~~l~~~l~-~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~v~~iSa~   83 (352)
                      .+++..++++||++|+|+|++.+++..+..+.++++ .++|+++|+||+|+........+.+++ +.+..  +++.+||+
T Consensus        72 ~~~~~~~~~~ad~il~V~D~~~~~~~~d~~i~~~l~~~~~p~ilv~NK~D~~~~~~~~~~~~~~-~lg~~--~~~~iSA~  148 (439)
T 1mky_A           72 KEVTLNMIREADLVLFVVDGKRGITKEDESLADFLRKSTVDTILVANKAENLREFEREVKPELY-SLGFG--EPIPVSAE  148 (439)
T ss_dssp             HHHHHHHHTTCSEEEEEEETTTCCCHHHHHHHHHHHHHTCCEEEEEESCCSHHHHHHHTHHHHG-GGSSC--SCEECBTT
T ss_pred             HHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEeCCCCccccHHHHHHHHH-hcCCC--CEEEEecc
Confidence            456778899999999999999988777777777776 589999999999985431111113333 44542  58899999


Q ss_pred             CCCCCCHHHHHHHHHHHhhhccccccccccceeEEEeccCCCCchhHHHHHhhhhcccCCCCCCCcchhhhhcccccccc
Q psy15351         84 NPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHR  163 (352)
Q Consensus        84 ~~~~~gi~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~nvgksslin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (352)
                      ++  .|+.+|++.+.+.+++....                                              .     ....
T Consensus       149 ~g--~gv~~L~~~i~~~l~~~~~~----------------------------------------------~-----~~~~  175 (439)
T 1mky_A          149 HN--INLDTMLETIIKKLEEKGLD----------------------------------------------L-----ESKP  175 (439)
T ss_dssp             TT--BSHHHHHHHHHHHHHHTTCC----------------------------------------------S-----SSCC
T ss_pred             CC--CCHHHHHHHHHHhccccccc----------------------------------------------c-----hhcc
Confidence            99  99999999998776532100                                              0     0000


Q ss_pred             ccCcceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCCcEEEEeCCCCCC
Q psy15351        164 TEVYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISL  233 (352)
Q Consensus       164 ~~~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~~  233 (352)
                      .....++++++|.||||||||+|+|.+     .....+++.||+|++.........+..+.++||||+..
T Consensus       176 ~~~~~~kvaivG~~gvGKSTLln~l~g-----~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~  240 (439)
T 1mky_A          176 EITDAIKVAIVGRPNVGKSTLFNAILN-----KERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRR  240 (439)
T ss_dssp             CCCSCEEEEEECSTTSSHHHHHHHHHT-----STTEEECCCC------CCEEEEETTEEEEESSCSCC--
T ss_pred             ccccCceEEEECCCCCCHHHHHHHHhC-----CcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCcc
Confidence            112468999999999999999999997     45677999999999987654445566789999999854

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=99.81  E-value=4.3e-20  Score=170.29  Aligned_cols=143  Identities=25%  Similarity=0.329  Sum_probs=103.2

Q ss_pred             HHhhccCEEEEEEcCCCCCCCcCHHHHHHHh----CCCCEEEEEEcccCCCccc----hHHHHHHHHhhcCCCCcEEEee
Q psy15351         10 KHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQ----NIRPMVLVLNKRDLINSKH----ESLIEEKVRKEQSHISEVIFTN   81 (352)
Q Consensus        10 ~~i~~aD~vl~VvDar~p~~~~~~~l~~~l~----~~k~~ilVlNK~Dl~~~~~----~~~~~~~~~~~~~~~~~v~~iS   81 (352)
                      ..++++|+|++|+|++.|..+.+ .+.+++.    .++|.++|+||+||+++..    .+.|.++|++.|++   ++++|
T Consensus        82 ~~~anvD~v~~V~~~~~p~~~~~-~i~r~L~~~~~~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~g~~---v~~~s  157 (307)
T 1t9h_A           82 PPICNVDQAVLVFSAVQPSFSTA-LLDRFLVLVEANDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYD---VYLTS  157 (307)
T ss_dssp             TTEECCCEEEEEEESTTTTCCHH-HHHHHHHHHHTTTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCC---EEECC
T ss_pred             HHHHhCCEEEEEEeCCCCCCCHH-HHHHHHHHHHHCCCCEEEEEECCccCchhhhHHHHHHHHHHHHhCCCe---EEEEe
Confidence            36899999999999999988876 6777763    5789999999999998744    57899999887876   99999


Q ss_pred             cCCCCCCCHHHHHHHHHHHhhhccccccccccceeEEEeccCCCCchhHHHHHhhhhcccCCCCCCCcchhhhhcccccc
Q psy15351         82 CRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRY  161 (352)
Q Consensus        82 a~~~~~~gi~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~nvgksslin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (352)
                      |.++  .|+++|++..                                                                
T Consensus       158 a~~~--~g~~~L~~~~----------------------------------------------------------------  171 (307)
T 1t9h_A          158 SKDQ--DSLADIIPHF----------------------------------------------------------------  171 (307)
T ss_dssp             HHHH--TTCTTTGGGG----------------------------------------------------------------
T ss_pred             cCCC--CCHHHHHhhc----------------------------------------------------------------
Confidence            9998  8877653221                                                                


Q ss_pred             ccccCcceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCC-------CceeEeeeeEEecCCCcEEEEeCCCCCCC
Q psy15351        162 HRTEVYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKA-------GVTRSVMSQVKISEKPLIYILDTPGISLP  234 (352)
Q Consensus       162 ~~~~~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~p-------g~T~~~~~~~~~~~~~~~~l~DtPGi~~~  234 (352)
                           .+-.++++|.+|||||||+|+|.+.     ....+|..+       ++|+..+ .+...   ..+++||||+...
T Consensus       172 -----~G~~~~lvG~sG~GKSTLln~L~g~-----~~~~~G~I~~~~~~G~~tt~~~~-~~~~~---~g~v~dtpg~~~~  237 (307)
T 1t9h_A          172 -----QDKTTVFAGQSGVGKSSLLNAISPE-----LGLRTNEISEHLGRGKHTTRHVE-LIHTS---GGLVADTPGFSSL  237 (307)
T ss_dssp             -----TTSEEEEEESHHHHHHHHHHHHCC------------------------CCCCC-EEEET---TEEEESSCSCSSC
T ss_pred             -----CCCEEEEECCCCCCHHHHHHHhccc-----ccccccceeeecCCCcccccHHH-HhhcC---CEEEecCCCcccc
Confidence                 1236899999999999999999873     333344433       4666543 33332   3689999999876


Q ss_pred             CC
Q psy15351        235 RI  236 (352)
Q Consensus       235 ~~  236 (352)
                      .+
T Consensus       238 ~l  239 (307)
T 1t9h_A          238 EF  239 (307)
T ss_dssp             CC
T ss_pred             cc
Confidence            43

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=99.74  E-value=1.7e-17  Score=155.83  Aligned_cols=142  Identities=20%  Similarity=0.277  Sum_probs=100.0

Q ss_pred             HHHhhccCEEEEEEcCCCCCCCcCHHHHHHHh----CCCCEEEEEEcccCCCccc---hHHHHHHHHhhcCCCCcEEEee
Q psy15351          9 EKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQ----NIRPMVLVLNKRDLINSKH---ESLIEEKVRKEQSHISEVIFTN   81 (352)
Q Consensus         9 ~~~i~~aD~vl~VvDar~p~~~~~~~l~~~l~----~~k~~ilVlNK~Dl~~~~~---~~~~~~~~~~~~~~~~~v~~iS   81 (352)
                      +..++++|+|++| |++.|..+.+ .+.+++.    .++|.++|+||+||++++.   ...|.++|.+.|++   ++++|
T Consensus       125 ~~i~anvD~v~iv-~a~~P~~~~~-~i~r~L~~a~~~~~~~iivlNK~DL~~~~~~~~~~~~~~~y~~~G~~---v~~~S  199 (358)
T 2rcn_A          125 KPIAANIDQIVIV-SAILPELSLN-IIDRYLVGCETLQVEPLIVLNKIDLLDDEGMDFVNEQMDIYRNIGYR---VLMVS  199 (358)
T ss_dssp             EEEEECCCEEEEE-EESTTTCCHH-HHHHHHHHHHHHTCEEEEEEECGGGCCHHHHHHHHHHHHHHHTTTCC---EEECB
T ss_pred             HHHHhcCCEEEEE-EeCCCCCCHH-HHHHHHHHHHhcCCCEEEEEECccCCCchhHHHHHHHHHHHHhCCCc---EEEEe
Confidence            3457999999965 7888876654 5666653    5788899999999998764   56788888888887   99999


Q ss_pred             cCCCCCCCHHHHHHHHHHHhhhccccccccccceeEEEeccCCCCchhHHHHHhhhhcccCCCCCCCcchhhhhcccccc
Q psy15351         82 CRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRY  161 (352)
Q Consensus        82 a~~~~~~gi~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~nvgksslin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (352)
                      |.++  .|+++|...+                                                                
T Consensus       200 a~~~--~gl~~L~~~~----------------------------------------------------------------  213 (358)
T 2rcn_A          200 SHTQ--DGLKPLEEAL----------------------------------------------------------------  213 (358)
T ss_dssp             TTTT--BTHHHHHHHH----------------------------------------------------------------
T ss_pred             cCCC--cCHHHHHHhc----------------------------------------------------------------
Confidence            9999  9988876432                                                                


Q ss_pred             ccccCcceEEEEeCCCCCChHHHHHHHhCCCCCCCCc-eecCCCC---C----ceeEeeeeEEecCCCcEEEEeCCCCCC
Q psy15351        162 HRTEVYNTTVMVVGVPNVGKSSIINALRSSHMKKGKA-VPVGPKA---G----VTRSVMSQVKISEKPLIYILDTPGISL  233 (352)
Q Consensus       162 ~~~~~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~-~~~~~~p---g----~T~~~~~~~~~~~~~~~~l~DtPGi~~  233 (352)
                           .+-.++++|.+|||||||+|.|.+..     . ..+|...   |    +|+... ...+..  ...++||||+..
T Consensus       214 -----~G~~~~lvG~sG~GKSTLln~L~g~~-----~~~~~G~I~~~~G~g~~tt~~~~-i~~v~q--~~~l~dtpgv~e  280 (358)
T 2rcn_A          214 -----TGRISIFAGQSGVGKSSLLNALLGLQ-----NEILTNDVSNVSGLGQHTTTAAR-LYHFPH--GGDVIDSPGVRE  280 (358)
T ss_dssp             -----TTSEEEEECCTTSSHHHHHHHHHCCS-----SCCCCC-------------CCCE-EEECTT--SCEEEECHHHHT
T ss_pred             -----CCCEEEEECCCCccHHHHHHHHhccc-----cccccCCccccCCCCccceEEEE-EEEECC--CCEecCcccHHH
Confidence                 11258899999999999999999732     2 2333222   2    344332 222322  357899999976


Q ss_pred             C
Q psy15351        234 P  234 (352)
Q Consensus       234 ~  234 (352)
                      .
T Consensus       281 ~  281 (358)
T 2rcn_A          281 F  281 (358)
T ss_dssp             C
T ss_pred             h
Confidence            4

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=99.72  E-value=5.4e-17  Score=150.00  Aligned_cols=145  Identities=26%  Similarity=0.312  Sum_probs=98.7

Q ss_pred             HhhccCEEEEEEcCCCCCCCcCHHHHHHH---h-CCCCEEEEEEcccCCCccc---hHHHHHHHHhhcCCCCcEEEeecC
Q psy15351         11 HLKNVDIVIEVHDSRMPFTGRNHLLQQSV---Q-NIRPMVLVLNKRDLINSKH---ESLIEEKVRKEQSHISEVIFTNCR   83 (352)
Q Consensus        11 ~i~~aD~vl~VvDar~p~~~~~~~l~~~l---~-~~k~~ilVlNK~Dl~~~~~---~~~~~~~~~~~~~~~~~v~~iSa~   83 (352)
                      .++++|++++|+|+++|..+.+ .+.+++   . .+.|.++|+||+||.++..   ..+|.+++++.++.   ++.+||+
T Consensus        76 ~~~naD~vliV~d~~~p~~s~~-~l~~~l~~~~~~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~~~g~~---~~~~SA~  151 (302)
T 2yv5_A           76 KVANVDRVIIVETLKMPEFNNY-LLDNMLVVYEYFKVEPVIVFNKIDLLNEEEKKELERWISIYRDAGYD---VLKVSAK  151 (302)
T ss_dssp             EEESCCEEEEEECSTTTTCCHH-HHHHHHHHHHHTTCEEEEEECCGGGCCHHHHHHHHHHHHHHHHTTCE---EEECCTT
T ss_pred             HHHhcCEEEEEEECCCCCCCHH-HHHHHHHHHHhCCCCEEEEEEcccCCCccccHHHHHHHHHHHHCCCe---EEEEECC
Confidence            5789999999999998864433 334443   2 6789999999999987652   56777777766765   9999999


Q ss_pred             CCCCCCHHHHHHHHHHHhhhccccccccccceeEEEeccCCCCchhHHHHHhhhhcccCCCCCCCcchhhhhcccccccc
Q psy15351         84 NPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHR  163 (352)
Q Consensus        84 ~~~~~gi~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~nvgksslin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (352)
                      ++  .|+++|++.+.                                                                 
T Consensus       152 ~g--~gi~~L~~~l~-----------------------------------------------------------------  164 (302)
T 2yv5_A          152 TG--EGIDELVDYLE-----------------------------------------------------------------  164 (302)
T ss_dssp             TC--TTHHHHHHHTT-----------------------------------------------------------------
T ss_pred             CC--CCHHHHHhhcc-----------------------------------------------------------------
Confidence            99  99999876531                                                                 


Q ss_pred             ccCcceEEEEeCCCCCChHHHHHHHhCCCCCCCCceec--CCCCCceeEeeeeEEecCCCcEEEEeCCCCCCC
Q psy15351        164 TEVYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPV--GPKAGVTRSVMSQVKISEKPLIYILDTPGISLP  234 (352)
Q Consensus       164 ~~~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~--~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~~~  234 (352)
                          +..++++|.+|+|||||+|+|. ...........  +.-..+|+... .....  ...+++||||+...
T Consensus       165 ----G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~-~~~~~--~~g~v~d~pg~~~~  229 (302)
T 2yv5_A          165 ----GFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVR-LIPFG--KGSFVGDTPGFSKV  229 (302)
T ss_dssp             ----TCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEE-EEEET--TTEEEESSCCCSSC
T ss_pred             ----CcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEE-EEEcC--CCcEEEECcCcCcC
Confidence                2347899999999999999998 42111111111  11222555432 23322  24689999999754

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=99.69  E-value=4.1e-16  Score=144.03  Aligned_cols=143  Identities=27%  Similarity=0.374  Sum_probs=96.3

Q ss_pred             HHhhccCEEEEEEcCCCCCCCcCHHHHHHH---h-CCCCEEEEEEcccCCCccc---hHHHHHHHHhhcCCCCcEEEeec
Q psy15351         10 KHLKNVDIVIEVHDSRMPFTGRNHLLQQSV---Q-NIRPMVLVLNKRDLINSKH---ESLIEEKVRKEQSHISEVIFTNC   82 (352)
Q Consensus        10 ~~i~~aD~vl~VvDar~p~~~~~~~l~~~l---~-~~k~~ilVlNK~Dl~~~~~---~~~~~~~~~~~~~~~~~v~~iSa   82 (352)
                      ..+.++|++|+|+|+++|.++. ..+..++   + .+.|+++|+||+||.+...   ..+|.+.+... .   +++.+||
T Consensus        80 ~~~~~ad~vilV~D~~~~~~s~-~~l~~~l~~~~~~~~piilv~NK~DL~~~~~v~~~~~~~~~~~~~-~---~~~~~SA  154 (301)
T 1u0l_A           80 PHVANVDQVILVVTVKMPETST-YIIDKFLVLAEKNELETVMVINKMDLYDEDDLRKVRELEEIYSGL-Y---PIVKTSA  154 (301)
T ss_dssp             TTEESCCEEEEEECSSTTCCCH-HHHHHHHHHHHHTTCEEEEEECCGGGCCHHHHHHHHHHHHHHTTT-S---CEEECCT
T ss_pred             cccccCCEEEEEEeCCCCCCCH-HHHHHHHHHHHHCCCCEEEEEeHHHcCCchhHHHHHHHHHHHhhh-C---cEEEEEC
Confidence            3578999999999999886443 2333443   2 5789999999999987643   23455444322 4   4999999


Q ss_pred             CCCCCCCHHHHHHHHHHHhhhccccccccccceeEEEeccCCCCchhHHHHHhhhhcccCCCCCCCcchhhhhccccccc
Q psy15351         83 RNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYH  162 (352)
Q Consensus        83 ~~~~~~gi~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~nvgksslin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (352)
                      +++  .|+++++..+.                                                                
T Consensus       155 ktg--~gv~~lf~~l~----------------------------------------------------------------  168 (301)
T 1u0l_A          155 KTG--MGIEELKEYLK----------------------------------------------------------------  168 (301)
T ss_dssp             TTC--TTHHHHHHHHS----------------------------------------------------------------
T ss_pred             CCC--cCHHHHHHHhc----------------------------------------------------------------
Confidence            999  99999876542                                                                


Q ss_pred             cccCcceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCC-------CceeEeeeeEEecCCCcEEEEeCCCCCCCC
Q psy15351        163 RTEVYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKA-------GVTRSVMSQVKISEKPLIYILDTPGISLPR  235 (352)
Q Consensus       163 ~~~~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~p-------g~T~~~~~~~~~~~~~~~~l~DtPGi~~~~  235 (352)
                           +-.++++|.+|+|||||+|+|.+.     ....+|...       .+|+... .....  ...+++||||+....
T Consensus       169 -----geiv~l~G~sG~GKSTll~~l~g~-----~~~~~G~i~~~~~~g~~~t~~~~-~~~~~--~~g~v~q~p~~~~~~  235 (301)
T 1u0l_A          169 -----GKISTMAGLSGVGKSSLLNAINPG-----LKLRVSEVSEKLQRGRHTTTTAQ-LLKFD--FGGYVVDTPGFANLE  235 (301)
T ss_dssp             -----SSEEEEECSTTSSHHHHHHHHSTT-----CCCC-------------CCCSCC-EEECT--TSCEEESSCSSTTCC
T ss_pred             -----CCeEEEECCCCCcHHHHHHHhccc-----ccccccceecccCCCCCceeeeE-EEEcC--CCCEEEECcCCCccC
Confidence                 124789999999999999999873     223333322       2454432 22222  236899999998765


Q ss_pred             C
Q psy15351        236 I  236 (352)
Q Consensus       236 ~  236 (352)
                      +
T Consensus       236 ~  236 (301)
T 1u0l_A          236 I  236 (301)
T ss_dssp             C
T ss_pred             C
Confidence            4

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=99.48  E-value=1e-15  Score=144.84  Aligned_cols=166  Identities=19%  Similarity=0.181  Sum_probs=102.2

Q ss_pred             CEEEEEEcCCCCCCCcCHHHHHHHh---CCCCEEEEEEcccCCCccchHHHHHHHHhh--cCCCCcEEEeecCCCCCCCH
Q psy15351         16 DIVIEVHDSRMPFTGRNHLLQQSVQ---NIRPMVLVLNKRDLINSKHESLIEEKVRKE--QSHISEVIFTNCRNPNCKGV   90 (352)
Q Consensus        16 D~vl~VvDar~p~~~~~~~l~~~l~---~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~--~~~~~~v~~iSa~~~~~~gi   90 (352)
                      |.+-.++|++.++.+.++.+.+++.   ..+|.++++||+|++++...+.|.++++..  +..   ...+++..+  .+.
T Consensus        59 ~~l~~i~~~~~~l~~~~p~~~~l~~~~~~~k~~~~~Lnk~dl~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~--~~~  133 (357)
T 2e87_A           59 DNLRKVLERTPGLSTLPKFYQELVDVLVDRDTFHKAMAGIDWAIRIIRELEERYVERIRYSND---PNEIAELRR--QFY  133 (357)
T ss_dssp             HHHHHHHHHSCCGGGSCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCC---HHHHHHHHH--HHH
T ss_pred             HHHHHHHHhCCCcccCCHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC---HHHHHHHHH--HHH
Confidence            3444567777777788888877663   567788999999999988888899988652  322   222232222  233


Q ss_pred             HHHHHHHHHHhhhccccccccccceeEEEeccCCCCchhHHHHHhhhhcccCCCCCCCcchhhhhccccccccccCcceE
Q psy15351         91 QKILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTT  170 (352)
Q Consensus        91 ~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~nvgksslin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (352)
                      ..+.+.+.+....-                        ..+...+                    +...+........++
T Consensus       134 ~~l~~~~~~~~~~l------------------------~~l~~~~--------------------~~~~~~~~~~~~~~~  169 (357)
T 2e87_A          134 GRVASVLRDIDDRL------------------------RYLNKAR--------------------EVLKDLPVVDLEIPT  169 (357)
T ss_dssp             HHHHHHHHHTHHHH------------------------HHHHHHH--------------------HHGGGSCCCCSSSCE
T ss_pred             HHHHHHHHHHHHHH------------------------HHHHHHH--------------------HHHhcCCccCCCCCE
Confidence            33322222111100                        0000000                    000111111245689


Q ss_pred             EEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCCcEEEEeCCCCCCCCC
Q psy15351        171 VMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRI  236 (352)
Q Consensus       171 v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~~~~~  236 (352)
                      |+++|.||||||||+|+|.+      ....+++.|++|++.........+..+.++||||+.....
T Consensus       170 v~lvG~~gvGKSTLin~L~~------~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~  229 (357)
T 2e87_A          170 VVIAGHPNVGKSTLLKALTT------AKPEIASYPFTTRGINVGQFEDGYFRYQIIDTPGLLDRPI  229 (357)
T ss_dssp             EEEECSTTSSHHHHHHHHCS------SCCEEECCTTCSSCEEEEEEEETTEEEEEEECTTTSSSCS
T ss_pred             EEEECCCCCCHHHHHHHHhC------CCCccCCCCCeeeceeEEEEEecCceEEEEeCCCccccch
Confidence            99999999999999999996      2356778899998876443333445689999999987543

>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}

Probab=99.40  E-value=1.1e-13  Score=130.74  Aligned_cols=62  Identities=27%  Similarity=0.279  Sum_probs=54.7

Q ss_pred             cceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCCcEEEEeCCCCCCC
Q psy15351        167 YNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLP  234 (352)
Q Consensus       167 ~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~~~  234 (352)
                      ...+|+++|+||||||||+|+|++      ..+.+++.||||+++..++....+.++.|+||||+...
T Consensus        71 g~a~V~ivG~PNvGKSTL~n~Lt~------~~~~v~~~pftT~~~~~g~~~~~~~~i~l~D~pGl~~~  132 (376)
T 4a9a_A           71 GVASVGFVGFPSVGKSTLLSKLTG------TESEAAEYEFTTLVTVPGVIRYKGAKIQMLDLPGIIDG  132 (376)
T ss_dssp             SSEEEEEECCCCHHHHHHHHHHHS------BCCCGGGTCSSCCCEEEEEEEETTEEEEEEECGGGCCC
T ss_pred             CCCeEEEECCCCCCHHHHHHHHhC------CCCcccCCCCceeeeeeEEEEeCCcEEEEEeCCCccCC
Confidence            457899999999999999999996      34778999999999987777777788999999999875

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=99.31  E-value=7.8e-12  Score=115.65  Aligned_cols=66  Identities=42%  Similarity=0.573  Sum_probs=55.8

Q ss_pred             cCcceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecC-CCcEEEEeCCCCCCCC
Q psy15351        165 EVYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISE-KPLIYILDTPGISLPR  235 (352)
Q Consensus       165 ~~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~-~~~~~l~DtPGi~~~~  235 (352)
                      .++.-.|+++|.||||||||+|+|.+     .+.+.+++.|++|++....+.... +.++.|+||||+..+.
T Consensus         7 ~~~~g~v~ivG~~nvGKSTLin~l~g-----~~~~i~s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~   73 (308)
T 3iev_A            7 HMKVGYVAIVGKPNVGKSTLLNNLLG-----TKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPK   73 (308)
T ss_dssp             CCEEEEEEEECSTTSSHHHHHHHHHT-----SCCSCCCSSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCC
T ss_pred             CCCCCEEEEECCCCCcHHHHHHHHhC-----CCccccCCCCCceeeEEEEEEecCCCCeEEEEECcCCCccc
Confidence            35668899999999999999999998     566678999999998876665555 6689999999998764

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=99.20  E-value=1.7e-11  Score=113.01  Aligned_cols=63  Identities=35%  Similarity=0.596  Sum_probs=52.1

Q ss_pred             ceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCCcEEEEeCCCCCCCC
Q psy15351        168 NTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPR  235 (352)
Q Consensus       168 ~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~~~~  235 (352)
                      ..+|+++|.||||||||+|+|++     .+.+.+++.|+||++....+....+.++.|+||||+..+.
T Consensus         7 ~g~V~ivG~~nvGKSTLln~l~g-----~~~~ivs~~~~tTr~~i~~i~~~~~~~l~l~DTpG~~~~~   69 (301)
T 1wf3_A            7 SGFVAIVGKPNVGKSTLLNNLLG-----VKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPM   69 (301)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHT-----SCCSCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhC-----CceeeecCCCCceeEEEEEEEEeCCcEEEEecCccccchh
Confidence            35699999999999999999997     4566788999999987665555556689999999998763

>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2

Probab=99.15  E-value=1e-11  Score=116.71  Aligned_cols=91  Identities=22%  Similarity=0.208  Sum_probs=55.8

Q ss_pred             ceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCC-----------------CcEEEEeCCC
Q psy15351        168 NTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEK-----------------PLIYILDTPG  230 (352)
Q Consensus       168 ~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~-----------------~~~~l~DtPG  230 (352)
                      .++|+++|.||||||||+|+|++     . .+.+++.|++|.++..+.....+                 ..+.++||||
T Consensus         2 ~~kI~IVG~pnvGKSTL~n~Lt~-----~-~~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG   75 (363)
T 1jal_A            2 GFKCGIVGLPNVGKSTLFNALTK-----A-GIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAG   75 (363)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH-----T-C------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCS
T ss_pred             CCEEEEECCCCCCHHHHHHHHHC-----C-CCcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCC
Confidence            46899999999999999999996     2 36788999999987654333332                 3589999999


Q ss_pred             CCCCCCCCHHHHHHHHHHhhhhhhccchhhhhHhHHhhhcCCCC
Q psy15351        231 ISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGN  274 (352)
Q Consensus       231 i~~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~il~~~~~~~~  274 (352)
                      +....  +...++.......++        -+|.++++++..+.
T Consensus        76 l~~~a--~~~~gl~~~fl~~ir--------~ad~il~VvD~~~~  109 (363)
T 1jal_A           76 LVAGA--SKGEGLGNKFLANIR--------ETDAIGHVVRCFEN  109 (363)
T ss_dssp             CCTTH--HHHGGGTCCHHHHHH--------TCSEEEEEEECSCC
T ss_pred             Ccccc--cccchHHHHHHHHHH--------hcCeEEEEEecCCC
Confidence            98641  111111101111122        26778888887654

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.15  E-value=1.7e-11  Score=118.95  Aligned_cols=61  Identities=34%  Similarity=0.412  Sum_probs=39.4

Q ss_pred             eEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCCcEEEEeCCCCCCC
Q psy15351        169 TTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLP  234 (352)
Q Consensus       169 ~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~~~  234 (352)
                      .+|+++|.||||||||+|+|++     .+.+.+++.||+|++.........+..+.++||||+...
T Consensus         2 ~~v~ivG~pnvGKStL~nrl~~-----~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~   62 (439)
T 1mky_A            2 ATVLIVGRPNVGKSTLFNKLVK-----KKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDN   62 (439)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHC-------------------CCSEEEEEETTEEEEEEECTTTTSS
T ss_pred             CEEEEECCCCCCHHHHHHHHhC-----CCCceecCCCCCccceeeEEEEECCeEEEEEECCCcccc
Confidence            3699999999999999999997     455678999999999876554455668999999999753

>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}

Probab=99.14  E-value=1.6e-11  Score=116.53  Aligned_cols=110  Identities=18%  Similarity=0.167  Sum_probs=50.9

Q ss_pred             CcceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCC-----------------CcEEEEeC
Q psy15351        166 VYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEK-----------------PLIYILDT  228 (352)
Q Consensus       166 ~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~-----------------~~~~l~Dt  228 (352)
                      ..+.+|+++|.||||||||+|+|++     .. ..+++.|++|.++........+                 ..+.++||
T Consensus        20 ~~~~kvgIVG~pnvGKSTL~n~Ltg-----~~-~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDt   93 (396)
T 2ohf_A           20 GTSLKIGIVGLPNVGKSTFFNVLTN-----SQ-ASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDI   93 (396)
T ss_dssp             SSCCCEEEECCSSSSHHHHHHHHHC-------------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEEC
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHC-----CC-ccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEEC
Confidence            4568999999999999999999996     22 4788999999887654332222                 24899999


Q ss_pred             CCCCCCCCCCHHHHHHHHHHhhhhhhccchhhhhHhHHhhhcCCCCCcccccccCCCCCccHH
Q psy15351        229 PGISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIV  291 (352)
Q Consensus       229 PGi~~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~l~~~~~~~~  291 (352)
                      ||+.....  ...++...+...+.+        +|.++++++..+..++....+...|..+++
T Consensus        94 pGl~~~as--~~~glg~~~l~~ir~--------aD~Il~VvD~~~~~~i~~v~~~~dP~~di~  146 (396)
T 2ohf_A           94 AGLVKGAH--NGQGLGNAFLSHISA--------CDGIFHLTRAFEDDDITHVEGSVDPIRDIE  146 (396)
T ss_dssp             CC-------------CCHHHHHHHT--------SSSEEEEEEC------------CTTHHHHH
T ss_pred             CCcccccc--hhhHHHHHHHHHHHh--------cCeEEEEEecCCCcchhhhcCCCChHHHHH
Confidence            99987532  122221122223333        777888888776544444334345554443

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=99.05  E-value=4e-10  Score=103.78  Aligned_cols=60  Identities=32%  Similarity=0.425  Sum_probs=49.8

Q ss_pred             ceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCCcEEEEeCCCCC
Q psy15351        168 NTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGIS  232 (352)
Q Consensus       168 ~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~  232 (352)
                      ...|+++|.||||||||+|+|++     .+.+.+++.|++|++....+....+.++.++||||+.
T Consensus         8 ~~~VaIvG~~nvGKSTLln~L~g-----~~~~i~s~~~~tTr~~~~gi~~~~~~~i~~iDTpG~~   67 (301)
T 1ega_A            8 CGFIAIVGRPNVGKSTLLNKLLG-----QKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLH   67 (301)
T ss_dssp             EEEEEEECSSSSSHHHHHHHHHT-----CSEEECCCCSSCCSSCEEEEEEETTEEEEEESSSSCC
T ss_pred             CCEEEEECCCCCCHHHHHHHHHC-----CCccccCCCCCcceeeEEEEEEECCeeEEEEECcCCC
Confidence            45799999999999999999997     4566788999999876555554555679999999986

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*

Probab=99.04  E-value=2.1e-10  Score=111.97  Aligned_cols=64  Identities=27%  Similarity=0.447  Sum_probs=32.6

Q ss_pred             CcceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCCcEEEEeCCCCCCC
Q psy15351        166 VYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLP  234 (352)
Q Consensus       166 ~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~~~  234 (352)
                      ..+++|+++|.||||||||+|+|.+     ...+.+++.||||++.........+..+.++||||+..+
T Consensus       231 r~~~kV~ivG~~nvGKSSLln~L~~-----~~~a~vs~~~gtT~d~~~~~i~~~g~~l~liDT~G~~~~  294 (476)
T 3gee_A          231 SEGVSTVIAGKPNAGKSTLLNTLLG-----QERAIVSHMPGTTRDYIEECFIHDKTMFRLTDTAGLREA  294 (476)
T ss_dssp             HHCEEEEEECCTTSSHHHHHHHCC-----------------------CEEEEETTEEEEEEC-------
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhC-----CCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCCCcc
Confidence            3578999999999999999999997     455678999999999865444445667999999999764

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.02  E-value=9.4e-11  Score=113.58  Aligned_cols=61  Identities=33%  Similarity=0.416  Sum_probs=34.8

Q ss_pred             eEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCCcEEEEeCCCCCCC
Q psy15351        169 TTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLP  234 (352)
Q Consensus       169 ~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~~~  234 (352)
                      .+|+++|.||||||||+|+|++     ...+.+++.||+|++.........+..+.++||||+...
T Consensus         4 ~~V~ivG~~nvGKStL~n~l~~-----~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~   64 (436)
T 2hjg_A            4 PVVAIVGRPNVGKSTIFNRIAG-----ERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIG   64 (436)
T ss_dssp             CEEEEECSTTSSHHHHHHHHEE-----EECC-----------CEEEECTTCSSCCEEEC-------
T ss_pred             CEEEEECCCCCCHHHHHHHHhC-----CCceeecCCCCCccceEEEEEEECCceEEEEECCCCCCc
Confidence            5799999999999999999997     455678999999999765444445668999999999743

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=99.00  E-value=7.5e-10  Score=99.54  Aligned_cols=62  Identities=32%  Similarity=0.424  Sum_probs=50.9

Q ss_pred             eEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCCcEEEEeCCCCCCCCC
Q psy15351        169 TTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRI  236 (352)
Q Consensus       169 ~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~~~~~  236 (352)
                      .+|+++|.||||||||+|+|++      ....+++.||+|.+.........+..+.++||||+.....
T Consensus         2 ~kI~lvG~~n~GKSTL~n~L~g------~~~~v~~~pg~Tv~~~~~~~~~~~~~~~lvDtpG~~~~~~   63 (256)
T 3iby_A            2 THALLIGNPNCGKTTLFNALTN------ANQRVGNWPGVTVEKKTGEFLLGEHLIEITDLPGVYSLVA   63 (256)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHT------TSEEEEECTTSSSEEEEEEEEETTEEEEEEECCCCSSCC-
T ss_pred             CEEEEECCCCCCHHHHHHHHHC------CCCCccCCCCceEEEEEEEEEECCeEEEEEeCCCcccccc
Confidence            4799999999999999999996      3467899999998876655554566899999999987643

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=98.99  E-value=5.4e-10  Score=101.50  Aligned_cols=62  Identities=27%  Similarity=0.357  Sum_probs=51.8

Q ss_pred             ceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCCcEEEEeCCCCCCCC
Q psy15351        168 NTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPR  235 (352)
Q Consensus       168 ~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~~~~  235 (352)
                      .++|+++|.||||||||+|+|++      ....+++.||+|.+.........+..+.++||||+....
T Consensus         3 ~~~I~lvG~~n~GKSTLin~l~g------~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDtpG~~~~~   64 (274)
T 3i8s_A            3 KLTIGLIGNPNSGKTTLFNQLTG------SRQRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLT   64 (274)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHT------TCEEEEECTTSSSEEEEEEEECSSCEEEEEECCCCSCSC
T ss_pred             ccEEEEECCCCCCHHHHHHHHhC------CCcccCCCCCeeEEEEEEEEEeCCCceEEEECcCCCccc
Confidence            47899999999999999999996      336889999999887655544456689999999998754

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=98.98  E-value=1.4e-09  Score=97.89  Aligned_cols=69  Identities=29%  Similarity=0.318  Sum_probs=53.6

Q ss_pred             cceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCCcEEEEeCCCCCCCCCCCHHH
Q psy15351        167 YNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLEC  241 (352)
Q Consensus       167 ~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~~~~~~~~~~  241 (352)
                      +.++|+++|.||||||||+|+|++      ....+++.||+|.+.........+..+.++||||.........++
T Consensus         4 ~~~kI~lvG~~nvGKTsL~n~l~g------~~~~~~~~pg~tv~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~e   72 (258)
T 3a1s_A            4 HMVKVALAGCPNVGKTSLFNALTG------TKQYVANWPGVTVEKKEGVFTYKGYTINLIDLPGTYSLGYSSIDE   72 (258)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHT------TCEEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSSCCSSSHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHC------CCCcccCCCCceEEEEEEEEEECCeEEEEEECCCcCccCCCCHHH
Confidence            458899999999999999999996      335688899999887654444445579999999998764434333

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=98.96  E-value=6.3e-10  Score=99.95  Aligned_cols=67  Identities=19%  Similarity=0.173  Sum_probs=49.7

Q ss_pred             CcceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCC-ceeEeeeeEEecCCCcEEEEeCCCCCCCCCC
Q psy15351        166 VYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAG-VTRSVMSQVKISEKPLIYILDTPGISLPRID  237 (352)
Q Consensus       166 ~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg-~T~~~~~~~~~~~~~~~~l~DtPGi~~~~~~  237 (352)
                      ...++|+++|.||||||||+|+|.+     .....++..|+ +|+..........+..+.++||||+......
T Consensus        20 ~~~~~I~lvG~~g~GKStl~n~l~~-----~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~iiDTpG~~~~~~~   87 (260)
T 2xtp_A           20 RSELRIILVGKTGTGKSAAGNSILR-----KQAFESKLGSQTLTKTCSKSQGSWGNREIVIIDTPDMFSWKDH   87 (260)
T ss_dssp             -CCEEEEEEECTTSCHHHHHHHHHT-----SCCSCCCTTSCCCCCSCEEEEEEETTEEEEEEECCGGGGSSCC
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhC-----CCCcccCCCCCceeeeeEEEEEEeCCCEEEEEECcCCCCCCCC
Confidence            4568999999999999999999997     33344444555 7777654444455668999999999876443

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=98.96  E-value=7.8e-10  Score=92.97  Aligned_cols=63  Identities=35%  Similarity=0.457  Sum_probs=48.7

Q ss_pred             cceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCCcEEEEeCCCCCCC
Q psy15351        167 YNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLP  234 (352)
Q Consensus       167 ~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~~~  234 (352)
                      ++.+|+++|.||||||||+|+|.+     .....+++.||+|++.........+..+.++||||+...
T Consensus         3 ~~~ki~ivG~~g~GKStLl~~l~~-----~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~   65 (172)
T 2gj8_A            3 HGMKVVIAGRPNAGKSSLLNALAG-----REAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREA   65 (172)
T ss_dssp             -CEEEEEEESTTSSHHHHHHHHHT-----SCCSCCCSSTTCCCSCEEEEEEETTEEEEEEECCCCSCC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhC-----CCcceeeCCCCceeceeeEEEEECCeEEEEEECCCcccc
Confidence            457899999999999999999997     334457788999987654333334556899999999754

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=98.95  E-value=2.2e-10  Score=108.82  Aligned_cols=64  Identities=20%  Similarity=0.219  Sum_probs=51.7

Q ss_pred             CcceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCC-----------------CcEEEEeC
Q psy15351        166 VYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEK-----------------PLIYILDT  228 (352)
Q Consensus       166 ~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~-----------------~~~~l~Dt  228 (352)
                      .++.+++++|.||||||||+|+|++     ...+.+++.|+||+++..+.....+                 ..+.++||
T Consensus        18 ~~g~~vgiVG~pnaGKSTL~n~Ltg-----~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~   92 (392)
T 1ni3_A           18 GNNLKTGIVGMPNVGKSTFFRAITK-----SVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDI   92 (392)
T ss_dssp             SSCCEEEEEECSSSSHHHHHHHHHH-----STTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECT
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHC-----CCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEec
Confidence            4578999999999999999999997     4445889999999988765433332                 24799999


Q ss_pred             CCCCCC
Q psy15351        229 PGISLP  234 (352)
Q Consensus       229 PGi~~~  234 (352)
                      ||+...
T Consensus        93 pGl~~~   98 (392)
T 1ni3_A           93 AGLTKG   98 (392)
T ss_dssp             GGGCCC
T ss_pred             cccccC
Confidence            999865

>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2

Probab=98.95  E-value=1.3e-10  Score=111.07  Aligned_cols=60  Identities=25%  Similarity=0.252  Sum_probs=31.7

Q ss_pred             eEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEe---------------------cCC---CcEE
Q psy15351        169 TTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKI---------------------SEK---PLIY  224 (352)
Q Consensus       169 ~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~---------------------~~~---~~~~  224 (352)
                      ++|+++|.||||||||+|+|++     .. +.+++.||||+++..++..                     ..+   .++.
T Consensus         1 ~kI~ivG~pnvGKSTL~n~L~~-----~~-~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~   74 (397)
T 1wxq_A            1 MEIGVVGKPNVGKSTFFSAATL-----VD-VEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVK   74 (397)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHC--------------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEE
T ss_pred             CEEEEECCCCCCHHHHHHHHHC-----CC-CcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEE
Confidence            4799999999999999999997     33 7789999999987654311                     011   2589


Q ss_pred             EEeCCCCCCC
Q psy15351        225 ILDTPGISLP  234 (352)
Q Consensus       225 l~DtPGi~~~  234 (352)
                      |+||||+...
T Consensus        75 lvDtpG~~~~   84 (397)
T 1wxq_A           75 MVDVAGLVPG   84 (397)
T ss_dssp             EEECC-----
T ss_pred             EEECCCcccc
Confidence            9999999754

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=98.94  E-value=1.6e-09  Score=96.10  Aligned_cols=68  Identities=24%  Similarity=0.291  Sum_probs=44.3

Q ss_pred             CcceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCC--CceeEeeeeEEecCCCcEEEEeCCCCCCCCCCCH
Q psy15351        166 VYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKA--GVTRSVMSQVKISEKPLIYILDTPGISLPRIDNL  239 (352)
Q Consensus       166 ~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~p--g~T~~~~~~~~~~~~~~~~l~DtPGi~~~~~~~~  239 (352)
                      ...++|+++|.+|||||||+|+|++.     . ...+..|  ++|+..........+..+.++||||+........
T Consensus        27 ~~~~~i~lvG~~g~GKStlin~l~g~-----~-~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~   96 (239)
T 3lxx_A           27 NSQLRIVLVGKTGAGKSATGNSILGR-----K-VFHSGTAAKSITKKCEKRSSSWKETELVVVDTPGIFDTEVPNA   96 (239)
T ss_dssp             -CEEEEEEECCTTSSHHHHHHHHHTS-----C-CSCC-------CCSCEEEEEEETTEEEEEEECCSCC-----CH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHcCC-----C-cCccCCCCCceeeeEEEEEEEeCCceEEEEECCCccCCCCCHH
Confidence            45689999999999999999999973     2 2334444  6777766544445566899999999998754443

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=98.94  E-value=8.9e-10  Score=96.19  Aligned_cols=67  Identities=21%  Similarity=0.318  Sum_probs=51.4

Q ss_pred             CcceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEe-cCCCcEEEEeCCCCCCCCC
Q psy15351        166 VYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKI-SEKPLIYILDTPGISLPRI  236 (352)
Q Consensus       166 ~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~-~~~~~~~l~DtPGi~~~~~  236 (352)
                      ...++|+++|.+|||||||+|+|++.    ...+.++..||+|+........ ..+..+.++||||+.....
T Consensus        27 ~~~~~i~v~G~~~~GKSslin~l~~~----~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~   94 (223)
T 4dhe_A           27 TVQPEIAFAGRSNAGKSTAINVLCNQ----KRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEV   94 (223)
T ss_dssp             CCSCEEEEEESCHHHHHHHHHHHTTC----SSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCC
T ss_pred             CCCCEEEEEcCCCCCHHHHHHHHhCC----CcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccC
Confidence            35689999999999999999999972    1246788999999886532222 3345799999999887643

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=98.93  E-value=2.3e-09  Score=97.22  Aligned_cols=67  Identities=30%  Similarity=0.333  Sum_probs=51.1

Q ss_pred             ceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCCcEEEEeCCCCCCCCCCCHHH
Q psy15351        168 NTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLEC  241 (352)
Q Consensus       168 ~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~~~~~~~~~~  241 (352)
                      .++|+++|.||||||||+|+|++      ....+++.||+|.+........ +..+.++||||.........++
T Consensus         3 ~~kI~lvG~~nvGKSTL~n~L~g------~~~~v~~~pg~tv~~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~e   69 (272)
T 3b1v_A            3 MTEIALIGNPNSGKTSLFNLITG------HNQRVGNWPGVTVERKSGLVKK-NKDLEIQDLPGIYSMSPYSPEA   69 (272)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHC------CCCCCCSSSCCCCSCEEEECTT-CTTEEEEECCCCSCSSCSSHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHC------CCCcccCCCCCcEEEEEEEEec-CCeEEEEECCCcCccCCCChHH
Confidence            47899999999999999999996      2356889999998765433322 5579999999998754333333

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=98.93  E-value=1.1e-09  Score=96.36  Aligned_cols=68  Identities=26%  Similarity=0.311  Sum_probs=46.2

Q ss_pred             cccccCcceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCCcEEEEeCCCCCCC
Q psy15351        161 YHRTEVYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLP  234 (352)
Q Consensus       161 ~~~~~~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~~~  234 (352)
                      ++......++|+++|.+|||||||+|+|.+     .. ..+++.+++|+..........+..+.++||||....
T Consensus        22 ~P~~~~~~~kI~vvG~~~vGKSsLin~l~~-----~~-~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~   89 (228)
T 2qu8_A           22 LPSINPHKKTIILSGAPNVGKSSFMNIVSR-----AN-VDVQSYSFTTKNLYVGHFDHKLNKYQIIDTPGLLDR   89 (228)
T ss_dssp             CCSCCTTSEEEEEECSTTSSHHHHHHHHTT-----TC-EEEECC-----CEEEEEEEETTEEEEEEECTTTTTS
T ss_pred             CCCCCCCCCEEEEECCCCCCHHHHHHHHhC-----CC-CccCCCCCcceeeeeeeeecCCCeEEEEECCCCcCc
Confidence            333335679999999999999999999996     22 346778898887654333334457899999999754

>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*

Probab=98.92  E-value=1.3e-10  Score=113.49  Aligned_cols=63  Identities=33%  Similarity=0.473  Sum_probs=52.4

Q ss_pred             cceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCCcEEEEeCCCCC-CC
Q psy15351        167 YNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGIS-LP  234 (352)
Q Consensus       167 ~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~-~~  234 (352)
                      .+++|+++|.||||||||+|+|.+     ...+.+++.||||++........++..+.++||||+. ..
T Consensus       242 ~~~kV~ivG~pnvGKSSLln~L~~-----~~~a~vs~~~gTT~d~~~~~i~~~g~~~~l~DTaG~~~~~  305 (482)
T 1xzp_A          242 RGLRMVIVGKPNVGKSTLLNRLLN-----EDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSET  305 (482)
T ss_dssp             HCEEEEEECCHHHHTCHHHHHHHH-----HTBCCCCCSSCCSSCSCCEEEEETTEEEEEEESSCCCSSC
T ss_pred             CCCEEEEECcCCCcHHHHHHHHHC-----CCCCccCCCCCeeeeeEEEEEecCCeEEEEEECCCccccc
Confidence            458999999999999999999997     4456789999999998754444456679999999998 54

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=98.89  E-value=4.2e-09  Score=95.30  Aligned_cols=67  Identities=33%  Similarity=0.422  Sum_probs=53.2

Q ss_pred             ceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCCcEEEEeCCCCCCCCCCCHH
Q psy15351        168 NTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE  240 (352)
Q Consensus       168 ~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~~~~~~~~~  240 (352)
                      .++|+++|.||||||||+|+|++      ....+++.||+|.+.........+..+.++||||+........+
T Consensus         3 ~~~i~lvG~~g~GKTTL~n~l~g------~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~   69 (271)
T 3k53_A            3 LKTVALVGNPNVGKTTIFNALTG------LRQHVGNWPGVTVEKKEGIMEYREKEFLVVDLPGIYSLTAHSID   69 (271)
T ss_dssp             CEEEEEEECSSSSHHHHHHHHHT------TCEEEEECTTSSCEEEEEEEEETTEEEEEEECCCCSCCCSSCHH
T ss_pred             eeEEEEECCCCCCHHHHHHHHhC------CCcccCCCCCeEEEeeEEEEEECCceEEEEeCCCccccccCCHH
Confidence            47899999999999999999996      34488899999988765544445567999999999876443433

>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A

Probab=98.88  E-value=4.4e-10  Score=106.09  Aligned_cols=90  Identities=23%  Similarity=0.211  Sum_probs=58.3

Q ss_pred             eEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecC---------------------CCcEEEEe
Q psy15351        169 TTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISE---------------------KPLIYILD  227 (352)
Q Consensus       169 ~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~---------------------~~~~~l~D  227 (352)
                      ++|+++|.||||||||+|+|++      ..+.+++.|++|..+..++....                     +..+.++|
T Consensus         2 ~~v~IVG~pnvGKSTL~n~L~~------~~~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvD   75 (368)
T 2dby_A            2 LAVGIVGLPNVGKSTLFNALTR------ANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVD   75 (368)
T ss_dssp             CSEEEECCSSSSHHHHHHHHHH------HHTTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEE
T ss_pred             cEEEEECCCCCCHHHHHHHHhC------CCCcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEE
Confidence            5699999999999999999996      23567888998887654332211                     23589999


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHhhhhhhccchhhhhHhHHhhhcCCCC
Q psy15351        228 TPGISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGN  274 (352)
Q Consensus       228 tPGi~~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~il~~~~~~~~  274 (352)
                      |||+.......  ..+.......++.        +|.++++++..+.
T Consensus        76 tpGl~~~a~~~--~~lg~~fl~~ir~--------ad~ii~VvD~~~~  112 (368)
T 2dby_A           76 IAGLVKGAHKG--EGLGNQFLAHIRE--------VAAIAHVLRCFPD  112 (368)
T ss_dssp             CCSCCCCCCSS--SCTTHHHHHHHHT--------CSEEEEEEECCCC
T ss_pred             CCCcccccccc--chHHHHHHHHHHh--------CCEEEEEEECCCC
Confidence            99998653211  1111111122222        6777777877653

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=98.88  E-value=1.4e-09  Score=98.41  Aligned_cols=65  Identities=26%  Similarity=0.359  Sum_probs=51.1

Q ss_pred             CcceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCCcEEEEeCCCCCCCC
Q psy15351        166 VYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPR  235 (352)
Q Consensus       166 ~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~~~~  235 (352)
                      ...++|+++|.+|||||||+|+|++     .....+++.+++|...........+..+.++||||+....
T Consensus        37 ~~~~~I~vvG~~g~GKSSLin~l~~-----~~~~~~~~~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~~~  101 (270)
T 1h65_A           37 VNSLTILVMGKGGVGKSSTVNSIIG-----ERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGG  101 (270)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHT-----SCCSCCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETT
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHhC-----CCcccccCCCCcceeeEEEEEeeCCeEEEEEECCCCCCCc
Confidence            4578999999999999999999997     4445678888988776543333445579999999997653

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=98.88  E-value=1.6e-09  Score=97.62  Aligned_cols=65  Identities=31%  Similarity=0.361  Sum_probs=51.4

Q ss_pred             CcceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCCcEEEEeCCCCCCCC
Q psy15351        166 VYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPR  235 (352)
Q Consensus       166 ~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~~~~  235 (352)
                      ...++|+++|.+|||||||+|+|++     ...+.+++.+++|...........+..+.++||||+....
T Consensus        34 ~~~~~I~lvG~~g~GKSSLin~l~~-----~~~~~~~~~~~~t~~~~~~~~~~~~~~l~liDTpG~~~~~   98 (262)
T 3def_A           34 MNSMTVLVLGKGGVGKSSTVNSLIG-----EQVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEAG   98 (262)
T ss_dssp             CCEEEEEEEECTTSSHHHHHHHHHT-----SCCSCCCSSCC-CCCCEEEEEEETTEEEEEEECCCSEETT
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhC-----CCCcccCCCCCcceeeEEEEEEECCeeEEEEECCCCCCcc
Confidence            4579999999999999999999997     4555678889988876654444456689999999997653

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=98.87  E-value=9.1e-09  Score=94.95  Aligned_cols=98  Identities=15%  Similarity=0.293  Sum_probs=76.2

Q ss_pred             HHHHHHhhccCEEEEEEcCCCCCCCcCHHH-HHHHh-CCCCEEEEEEcccCC-CccchHHHHHHHHhhcCCCCcEEEeec
Q psy15351          6 KDIEKHLKNVDIVIEVHDSRMPFTGRNHLL-QQSVQ-NIRPMVLVLNKRDLI-NSKHESLIEEKVRKEQSHISEVIFTNC   82 (352)
Q Consensus         6 ~~~~~~i~~aD~vl~VvDar~p~~~~~~~l-~~~l~-~~k~~ilVlNK~Dl~-~~~~~~~~~~~~~~~~~~~~~v~~iSa   82 (352)
                      +.+...+..+|++++|+|+.++.+..+..+ .+.++ .+.|+++|+||+|+. +......+.+.+.+....+.+++.+||
T Consensus        84 ~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~~~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~i~~vSA  163 (308)
T 3iev_A           84 EIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPLNKPVIVVINKIDKIGPAKNVLPLIDEIHKKHPELTEIVPISA  163 (308)
T ss_dssp             HHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGGGCCCEEEEEECGGGSSSGGGGHHHHHHHHHHCTTCCCEEECBT
T ss_pred             HHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHhcCCCEEEEEECccCCCCHHHHHHHHHHHHHhccCCCeEEEEeC
Confidence            456778899999999999998776655554 45554 578999999999998 666566666666554322336999999


Q ss_pred             CCCCCCCHHHHHHHHHHHhhhcc
Q psy15351         83 RNPNCKGVQKILPTLQHISDNMT  105 (352)
Q Consensus        83 ~~~~~~gi~~L~~~i~~~~~~~~  105 (352)
                      +++  .|+++|++.+.+.+++.+
T Consensus       164 ~~g--~gv~~L~~~l~~~l~~~~  184 (308)
T 3iev_A          164 LKG--ANLDELVKTILKYLPEGE  184 (308)
T ss_dssp             TTT--BSHHHHHHHHHHHSCBCC
T ss_pred             CCC--CCHHHHHHHHHHhCccCC
Confidence            999  999999999999887654

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=98.86  E-value=6.8e-09  Score=86.36  Aligned_cols=61  Identities=31%  Similarity=0.397  Sum_probs=42.5

Q ss_pred             ceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCCcEEEEeCCCCCCC
Q psy15351        168 NTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLP  234 (352)
Q Consensus       168 ~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~~~  234 (352)
                      .++|+++|.+|||||||+|+|.+.      ...++..||+|.+.........+..+.++||||....
T Consensus         3 ~~~v~lvG~~gvGKStL~~~l~~~------~~~~~~~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~   63 (165)
T 2wji_A            3 SYEIALIGNPNVGKSTIFNALTGE------NVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSL   63 (165)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHCC------SSSCC-----CCCCCEEEEEETTEEEEEEECCCCSCS
T ss_pred             ccEEEEECCCCCCHHHHHHHHhCC------CeeccCCCCcceeeeEEEEEECCcEEEEEECCCcccC
Confidence            368999999999999999999962      2345678888877554333334557899999998764

>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*

Probab=98.85  E-value=1.9e-09  Score=107.32  Aligned_cols=63  Identities=22%  Similarity=0.275  Sum_probs=43.8

Q ss_pred             CcceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEe-------cCCCcEEEEeCCCCCCCC
Q psy15351        166 VYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKI-------SEKPLIYILDTPGISLPR  235 (352)
Q Consensus       166 ~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~-------~~~~~~~l~DtPGi~~~~  235 (352)
                      .+..+|+|+|.||||||||+|+|++.     ... + +.+|+|++...++..       ..+..+.|+||||+..+.
T Consensus        36 ~~~~~VaivG~pnvGKStLiN~L~g~-----~~~-~-~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~~~  105 (592)
T 1f5n_A           36 QPMVVVAIVGLYRTGKSYLMNKLAGK-----KKG-F-SLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGDVE  105 (592)
T ss_dssp             SBEEEEEEEEBTTSSHHHHHHHHTTC-----SSC-S-CCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCCGG
T ss_pred             CCCcEEEEECCCCCCHHHHHHhHcCC-----CCc-c-ccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCccc
Confidence            45688999999999999999999973     211 1 445544443332221       245579999999999764

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=98.82  E-value=6.3e-09  Score=88.32  Aligned_cols=63  Identities=35%  Similarity=0.477  Sum_probs=49.3

Q ss_pred             CcceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCCcEEEEeCCCCCCCCC
Q psy15351        166 VYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRI  236 (352)
Q Consensus       166 ~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~~~~~  236 (352)
                      ...++|+++|.+|||||||+|+|.+     .....+++.+|+|+.... ...  +.++.++||||+.....
T Consensus        21 ~~~~~i~v~G~~~~GKSsli~~l~~-----~~~~~~~~~~~~t~~~~~-~~~--~~~~~i~Dt~G~~~~~~   83 (195)
T 3pqc_A           21 PLKGEVAFVGRSNVGKSSLLNALFN-----RKIAFVSKTPGKTRSINF-YLV--NSKYYFVDLPGYGYAKV   83 (195)
T ss_dssp             CTTCEEEEEEBTTSSHHHHHHHHHT-----SCCSCCCSSCCCCCCEEE-EEE--TTTEEEEECCCBSSSCC
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHc-----CccccccCCCCCccCeEE-EEE--CCcEEEEECCCCccccC
Confidence            4568999999999999999999997     345677889999987643 222  34699999999876543

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=98.82  E-value=4.6e-08  Score=82.60  Aligned_cols=57  Identities=35%  Similarity=0.578  Sum_probs=44.5

Q ss_pred             eEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCCcEEEEeCCCCCCCC
Q psy15351        169 TTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPR  235 (352)
Q Consensus       169 ~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~~~~  235 (352)
                      ++|+++|.+|||||||+|++.+      .....+..||+|..... +...   .+.++||||+....
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~------~~~~~~~~~~~t~~~~~-~~~~---~~~l~Dt~G~~~~~   58 (190)
T 2cxx_A            2 ATIIFAGRSNVGKSTLIYRLTG------KKVRRGKRPGVTRKIIE-IEWK---NHKIIDMPGFGFMM   58 (190)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHS------CCCSSSSSTTCTTSCEE-EEET---TEEEEECCCBSCCT
T ss_pred             cEEEEECCCCCCHHHHHHHHhC------cCCccCCCCCccceeEE-EecC---CEEEEECCCccccc
Confidence            5799999999999999999996      23556778888877643 3322   69999999987653

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=98.80  E-value=2e-08  Score=87.49  Aligned_cols=95  Identities=12%  Similarity=0.076  Sum_probs=67.3

Q ss_pred             HHHHhhccCEEEEEEcCCCCCCCcCHHHHHHHh-CCCCEEEEEEcccCCCccchHHHH----HHHHhh---c-CCCCcEE
Q psy15351          8 IEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQ-NIRPMVLVLNKRDLINSKHESLIE----EKVRKE---Q-SHISEVI   78 (352)
Q Consensus         8 ~~~~i~~aD~vl~VvDar~p~~~~~~~l~~~l~-~~k~~ilVlNK~Dl~~~~~~~~~~----~~~~~~---~-~~~~~v~   78 (352)
                      .......+|++++|+|+++++...+..+.+++. .+.|+++|+||+|+.+........    +.+...   + ....+++
T Consensus       109 ~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  188 (223)
T 4dhe_A          109 YLQTRPQLCGMILMMDARRPLTELDRRMIEWFAPTGKPIHSLLTKCDKLTRQESINALRATQKSLDAYRDAGYAGKLTVQ  188 (223)
T ss_dssp             HHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHGGGCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTCCSCEEEE
T ss_pred             HHhcCcCcCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEeccccCChhhHHHHHHHHHHHHHhhhhcccCCCCeEE
Confidence            333445589999999999877665566666665 578999999999998865433332    333321   0 1122589


Q ss_pred             EeecCCCCCCCHHHHHHHHHHHhhhc
Q psy15351         79 FTNCRNPNCKGVQKILPTLQHISDNM  104 (352)
Q Consensus        79 ~iSa~~~~~~gi~~L~~~i~~~~~~~  104 (352)
                      .+||+++  .|+++++++|.+.++..
T Consensus       189 ~~SA~~g--~gv~~l~~~l~~~~~~~  212 (223)
T 4dhe_A          189 LFSALKR--TGLDDAHALIESWLRPA  212 (223)
T ss_dssp             EEBTTTT--BSHHHHHHHHHHHHC--
T ss_pred             EeecCCC--cCHHHHHHHHHHhcCcc
Confidence            9999999  99999999999887653

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=98.80  E-value=4.5e-09  Score=99.20  Aligned_cols=59  Identities=27%  Similarity=0.257  Sum_probs=38.6

Q ss_pred             EEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCCcEEEEeCCCCCCC
Q psy15351        170 TVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLP  234 (352)
Q Consensus       170 ~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~~~  234 (352)
                      .|+++|+||||||||+|+|++      ....+++.|++|+++........+..+.++||||+...
T Consensus       181 ~V~lvG~~naGKSTLln~L~~------~~~~~~~~~~~T~d~~~~~i~~~g~~v~l~DT~G~i~~  239 (364)
T 2qtf_A          181 SIGIVGYTNSGKTSLFNSLTG------LTQKVDTKLFTTMSPKRYAIPINNRKIMLVDTVGFIRG  239 (364)
T ss_dssp             EEEEECBTTSSHHHHHHHHHC------C-----------CCSCEEEEEETTEEEEEEECCCBCSS
T ss_pred             EEEEECCCCCCHHHHHHHHHC------CCccccCCcccccCCEEEEEEECCEEEEEEeCCCchhc
Confidence            499999999999999999996      23467888999988765433344567899999998653

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=98.79  E-value=3.7e-08  Score=83.46  Aligned_cols=92  Identities=18%  Similarity=0.235  Sum_probs=65.6

Q ss_pred             HHHhhccCEEEEEEcCCCCCCCcCHHHHHHHh-CCCCEEEEEEcccCCCccchHHHHHHHHhh--cCCCCcEEEeecCCC
Q psy15351          9 EKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQ-NIRPMVLVLNKRDLINSKHESLIEEKVRKE--QSHISEVIFTNCRNP   85 (352)
Q Consensus         9 ~~~i~~aD~vl~VvDar~p~~~~~~~l~~~l~-~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~--~~~~~~v~~iSa~~~   85 (352)
                      ......+|++++|+|++.+.......+..++. .+.|+++|+||+|+.++.......+.+++.  .....+++.+||+++
T Consensus        99 ~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  178 (195)
T 3pqc_A           99 FKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSLNIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYGEYTIIPTSSVTG  178 (195)
T ss_dssp             HHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSSCCSCEEECCTTTC
T ss_pred             HhcCcCceEEEEEecCCCCCCHHHHHHHHHHHHcCCCEEEEEEChhcCChHHHHHHHHHHHHHHhhcCCCceEEEecCCC
Confidence            33445569999999998776655555555555 679999999999998766544333333221  111124999999999


Q ss_pred             CCCCHHHHHHHHHHHhh
Q psy15351         86 NCKGVQKILPTLQHISD  102 (352)
Q Consensus        86 ~~~gi~~L~~~i~~~~~  102 (352)
                        .|++++++++.+.++
T Consensus       179 --~gv~~l~~~l~~~l~  193 (195)
T 3pqc_A          179 --EGISELLDLISTLLK  193 (195)
T ss_dssp             --TTHHHHHHHHHHHHC
T ss_pred             --CCHHHHHHHHHHHhh
Confidence              999999999987765

>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8

Probab=98.79  E-value=3.6e-09  Score=98.93  Aligned_cols=59  Identities=22%  Similarity=0.263  Sum_probs=47.1

Q ss_pred             eEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecC-CCcEEEEeCCCCCC
Q psy15351        169 TTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISE-KPLIYILDTPGISL  233 (352)
Q Consensus       169 ~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~-~~~~~l~DtPGi~~  233 (352)
                      .+|+++|.||||||||+|+|++      ....+++.|++|..+...+.... ...+.++||||+..
T Consensus       159 a~V~lvG~~nvGKSTLln~L~~------~~~~i~~~~ftTl~p~~g~v~~~~~~~~~l~DtPG~i~  218 (342)
T 1lnz_A          159 ADVGLVGFPSVGKSTLLSVVSS------AKPKIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIE  218 (342)
T ss_dssp             CCEEEESSTTSSHHHHHHHSEE------ECCEESSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHH
T ss_pred             CeeeeeCCCCCCHHHHHHHHHc------CCCccccCCccccCceEEEEEeCCCceEEEecCCCCcc
Confidence            4799999999999999999985      34567899999988765443333 36799999999864

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=98.79  E-value=2e-08  Score=84.87  Aligned_cols=62  Identities=31%  Similarity=0.385  Sum_probs=48.8

Q ss_pred             cceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCCcEEEEeCCCCCCC
Q psy15351        167 YNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLP  234 (352)
Q Consensus       167 ~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~~~  234 (352)
                      +.++|+++|.+|||||||+|+|.+      ....++..|++|.+.........+..+.++||||....
T Consensus         6 ~~~~i~lvG~~gvGKStL~~~l~~------~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~   67 (188)
T 2wjg_A            6 KSYEIALIGNPNVGKSTIFNALTG------ENVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSL   67 (188)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHT------TCEEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSCC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhC------CCccccCCCCeeccceEEEEEeCCcEEEEEECCCcCcc
Confidence            457999999999999999999996      33566778998887654433344567899999998765

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=98.77  E-value=2.2e-08  Score=85.03  Aligned_cols=107  Identities=22%  Similarity=0.038  Sum_probs=65.5

Q ss_pred             HHHHhhccCEEEEEEcCCCCCCCcC--HHHHHHHh----CCCCEEEEEEcccCCCccc-hHHHHHHHHhhcCCCCcEEEe
Q psy15351          8 IEKHLKNVDIVIEVHDSRMPFTGRN--HLLQQSVQ----NIRPMVLVLNKRDLINSKH-ESLIEEKVRKEQSHISEVIFT   80 (352)
Q Consensus         8 ~~~~i~~aD~vl~VvDar~p~~~~~--~~l~~~l~----~~k~~ilVlNK~Dl~~~~~-~~~~~~~~~~~~~~~~~v~~i   80 (352)
                      ....+..+|++|+|+|+.++.+...  ..+..+..    ...|+++|+||+|+.+... ..+..++.++.+..   ++.+
T Consensus        81 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~---~~~~  157 (195)
T 1x3s_A           81 TPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVDRNEGLKFARKHSML---FIEA  157 (195)
T ss_dssp             HHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCCSCHHHHHHHHHHTTCE---EEEC
T ss_pred             hHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCcccccCHHHHHHHHHHcCCE---EEEe
Confidence            3456789999999999987643222  11122222    3578999999999965432 33444555555554   8999


Q ss_pred             ecCCCCCCCHHHHHHHHHHHhhhccccccccccceeEEEeccCCCCchh
Q psy15351         81 NCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSS  129 (352)
Q Consensus        81 Sa~~~~~~gi~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~nvgkss  129 (352)
                      ||+++  .|+++++++|.+.+...+...          ..+..|+||||
T Consensus       158 Sa~~~--~gi~~l~~~l~~~~~~~~~~~----------~~~~~n~gkSs  194 (195)
T 1x3s_A          158 SAKTC--DGVQCAFEELVEKIIQTPGLW----------ESENQNSGPSS  194 (195)
T ss_dssp             CTTTC--TTHHHHHHHHHHHHHTSGGGT----------CC---------
T ss_pred             cCCCC--CCHHHHHHHHHHHHHhhhhhh----------cccccCCCCCC
Confidence            99999  999999999988776443111          12345888875

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=98.77  E-value=1.5e-08  Score=86.22  Aligned_cols=64  Identities=27%  Similarity=0.366  Sum_probs=40.5

Q ss_pred             CcceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCCcEEEEeCCCCCCCCC
Q psy15351        166 VYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRI  236 (352)
Q Consensus       166 ~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~~~~~  236 (352)
                      ...++|+++|.+|||||||+|+|.+.    .....+++.+|+|+.... ...  +..+.++||||+.....
T Consensus        21 ~~~~~i~v~G~~~~GKSsli~~l~~~----~~~~~~~~~~~~t~~~~~-~~~--~~~~~l~Dt~G~~~~~~   84 (195)
T 1svi_A           21 GGLPEIALAGRSNVGKSSFINSLINR----KNLARTSSKPGKTQTLNF-YII--NDELHFVDVPGYGFAKV   84 (195)
T ss_dssp             SCCCEEEEEEBTTSSHHHHHHHHHTC-----------------CCEEE-EEE--TTTEEEEECCCBCCCSS
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCC----CCccccCCCCCceeeEEE-EEE--CCcEEEEECCCCCcccc
Confidence            35689999999999999999999972    224567889999987643 323  33799999999877643

>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}

Probab=98.74  E-value=1.7e-09  Score=105.10  Aligned_cols=64  Identities=34%  Similarity=0.428  Sum_probs=46.2

Q ss_pred             CcceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCCcEEEEeCCCCCCC
Q psy15351        166 VYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLP  234 (352)
Q Consensus       166 ~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~~~  234 (352)
                      ..+++|+++|.||||||||+|+|.+     ...+.+++.||+|++........++..+.++||||+...
T Consensus       222 r~~~kV~ivG~~nvGKSSLln~L~~-----~~~a~v~~~~gtT~d~~~~~i~~~g~~v~liDT~G~~~~  285 (462)
T 3geh_A          222 RTGLKVAIVGRPNVGKSSLLNAWSQ-----SDRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRET  285 (462)
T ss_dssp             HHCEEEEEEECTTSSHHHHHHHHHH-----HHBSCCSCCTTCCHHHHHHEEEETTEEEEECC-------
T ss_pred             cCCCEEEEEcCCCCCHHHHHHHHhC-----CCcccccCCCCeeEEEEEEEEEECCEEEEEEECCccccc
Confidence            3578999999999999999999997     445668889999998765333345567999999999754

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=98.74  E-value=8.6e-09  Score=84.65  Aligned_cols=61  Identities=34%  Similarity=0.490  Sum_probs=39.2

Q ss_pred             eEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCCcEEEEeCCCCCCC
Q psy15351        169 TTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLP  234 (352)
Q Consensus       169 ~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~~~  234 (352)
                      ++|+++|.+|||||||+|++.+     .....++..|++|.+.........+..+.++||||....
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~   62 (161)
T 2dyk_A            2 HKVVIVGRPNVGKSSLFNRLLK-----KRSAVVADVPGVTRDLKEGVVETDRGRFLLVDTGGLWSG   62 (161)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH-----CCC-----------CCEEEEEEETTEEEEEEECGGGCSS
T ss_pred             CEEEEECCCCCCHHHHHHHHhC-----CCeeeccCCCCceecceEEEEEeCCceEEEEECCCCCCc
Confidence            5799999999999999999997     334456778888887654433344557999999998764

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=98.72  E-value=3.4e-08  Score=96.07  Aligned_cols=96  Identities=18%  Similarity=0.315  Sum_probs=72.5

Q ss_pred             HHHHhhccCEEEEEEcCCCCCCCcCHHHHHHHh-CCCCEEEEEEcccCCCccc--hHHHHHHHHhhc--CCCCcEEEeec
Q psy15351          8 IEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQ-NIRPMVLVLNKRDLINSKH--ESLIEEKVRKEQ--SHISEVIFTNC   82 (352)
Q Consensus         8 ~~~~i~~aD~vl~VvDar~p~~~~~~~l~~~l~-~~k~~ilVlNK~Dl~~~~~--~~~~~~~~~~~~--~~~~~v~~iSa   82 (352)
                      +...+..+|++|+|+|++.++...+..+..++. .++|+++|+||+|+.+...  .++..+.+++..  ....+++++||
T Consensus       271 ~~~~~~~ad~~llviD~~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA  350 (456)
T 4dcu_A          271 ALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEAGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILFMSA  350 (456)
T ss_dssp             HHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGSCCCSSHHHHHHHHHHHHCGGGTTSCEEECCT
T ss_pred             HHHHHhhCCEEEEEEeCCCCcCHHHHHHHHHHHHcCCCEEEEEEChhcCCCchHHHHHHHHHHHHhcccCCCCCEEEEcC
Confidence            446789999999999999987766666666555 6899999999999986543  344445544431  11225999999


Q ss_pred             CCCCCCCHHHHHHHHHHHhhhcc
Q psy15351         83 RNPNCKGVQKILPTLQHISDNMT  105 (352)
Q Consensus        83 ~~~~~~gi~~L~~~i~~~~~~~~  105 (352)
                      +++  .|++++++.+.+.+....
T Consensus       351 ~~g--~gv~~l~~~i~~~~~~~~  371 (456)
T 4dcu_A          351 LTK--KRIHTLMPAIIKASENHS  371 (456)
T ss_dssp             TTC--TTGGGHHHHHHHHHHHHT
T ss_pred             CCC--cCHHHHHHHHHHHHHHhc
Confidence            999  999999999988776543

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=98.72  E-value=1.1e-08  Score=94.37  Aligned_cols=39  Identities=21%  Similarity=0.255  Sum_probs=24.8

Q ss_pred             cceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCC
Q psy15351        167 YNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKA  205 (352)
Q Consensus       167 ~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~p  205 (352)
                      ..++|+++|.||||||||+|+|++..........++..|
T Consensus        23 ~~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p   61 (315)
T 1jwy_B           23 DLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRP   61 (315)
T ss_dssp             CCCEEEEEECSSSSHHHHHHHHHTSCCCCC--------C
T ss_pred             CCCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeee
Confidence            457899999999999999999998533222223445556

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=98.71  E-value=7.2e-08  Score=81.90  Aligned_cols=88  Identities=15%  Similarity=0.209  Sum_probs=63.6

Q ss_pred             hccCEEEEEEcCCCCCCCcCHHHHHHHh-CCCCEEEEEEcccCCCccchHHHHHHHHh-hcC-CCCcEEEeecCCCCCCC
Q psy15351         13 KNVDIVIEVHDSRMPFTGRNHLLQQSVQ-NIRPMVLVLNKRDLINSKHESLIEEKVRK-EQS-HISEVIFTNCRNPNCKG   89 (352)
Q Consensus        13 ~~aD~vl~VvDar~p~~~~~~~l~~~l~-~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~-~~~-~~~~v~~iSa~~~~~~g   89 (352)
                      ..+|++++|+|++++.+..+..+.+++. .+.|+++|+||+|+.+........+.+.+ ... ...+++.+||+++  .|
T Consensus       104 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~--~g  181 (195)
T 1svi_A          104 EELKAVVQIVDLRHAPSNDDVQMYEFLKYYGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDELILFSSETK--KG  181 (195)
T ss_dssp             TTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTSEEEECCTTTC--TT
T ss_pred             hcCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCChHHHHHHHHHHHHHHcccCCCceEEEEccCC--CC
Confidence            4449999999999877665555556655 67899999999999887654433333332 111 1125899999999  99


Q ss_pred             HHHHHHHHHHHhh
Q psy15351         90 VQKILPTLQHISD  102 (352)
Q Consensus        90 i~~L~~~i~~~~~  102 (352)
                      +++++++|.+.++
T Consensus       182 v~~l~~~l~~~l~  194 (195)
T 1svi_A          182 KDEAWGAIKKMIN  194 (195)
T ss_dssp             HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999877653

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=98.70  E-value=1.6e-08  Score=91.56  Aligned_cols=68  Identities=28%  Similarity=0.325  Sum_probs=38.1

Q ss_pred             cceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecC--CCCCceeEeeeeEEecCCC--cEEEEeCCCCCCC
Q psy15351        167 YNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVG--PKAGVTRSVMSQVKISEKP--LIYILDTPGISLP  234 (352)
Q Consensus       167 ~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~--~~pg~T~~~~~~~~~~~~~--~~~l~DtPGi~~~  234 (352)
                      ..++|+++|.+|+|||||+|+|++...........+  ..|+++...........+.  .+.++||||+.+.
T Consensus         7 ~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~   78 (274)
T 3t5d_A            7 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDA   78 (274)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCC
T ss_pred             cEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCcccc
Confidence            468999999999999999999987422111100000  1333333332222212222  6899999999754

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=98.69  E-value=2.8e-08  Score=91.40  Aligned_cols=95  Identities=19%  Similarity=0.190  Sum_probs=71.2

Q ss_pred             HHHHHHHhhccCEEEEEEcCCCCCCCcCHHHHHHHh-C--CCCEEEEEEcccCCCccc-hHHHHHHHHhhcCCCCcEEEe
Q psy15351          5 LKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQ-N--IRPMVLVLNKRDLINSKH-ESLIEEKVRKEQSHISEVIFT   80 (352)
Q Consensus         5 ~~~~~~~i~~aD~vl~VvDar~p~~~~~~~l~~~l~-~--~k~~ilVlNK~Dl~~~~~-~~~~~~~~~~~~~~~~~v~~i   80 (352)
                      ...++..+..+|++++|+|+.++++..+..+.+.++ .  +.|+++|+||+|+.+... ..++.+.+    ..+.+++++
T Consensus        77 ~~~~~~~l~~ad~il~VvD~~~~~~~~~~~i~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~----~~~~~~~~i  152 (301)
T 1wf3_A           77 DQEVYEALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGNKLDAAKYPEEAMKAYHEL----LPEAEPRML  152 (301)
T ss_dssp             HHHHHHHTSSCSEEEEEEETTSCCCHHHHHHHHHHGGGTTTSCEEEEEECGGGCSSHHHHHHHHHHT----STTSEEEEC
T ss_pred             HHHHHHHHhcCCEEEEEEECCCCCChHHHHHHHHHHhhcCCCCEEEEEECcccCCchHHHHHHHHHh----cCcCcEEEE
Confidence            445678899999999999999887655555555554 3  789999999999987643 33333322    233468999


Q ss_pred             ecCCCCCCCHHHHHHHHHHHhhhcc
Q psy15351         81 NCRNPNCKGVQKILPTLQHISDNMT  105 (352)
Q Consensus        81 Sa~~~~~~gi~~L~~~i~~~~~~~~  105 (352)
                      ||+++  .|+++|++.+.+.+++.+
T Consensus       153 SA~~g--~gv~~l~~~l~~~l~~~~  175 (301)
T 1wf3_A          153 SALDE--RQVAELKADLLALMPEGP  175 (301)
T ss_dssp             CTTCH--HHHHHHHHHHHTTCCBCC
T ss_pred             eCCCC--CCHHHHHHHHHHhcccCC
Confidence            99999  999999999988776543

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=98.69  E-value=2.5e-08  Score=81.79  Aligned_cols=89  Identities=16%  Similarity=0.250  Sum_probs=66.1

Q ss_pred             HHHHHHhhccCEEEEEEcCCCCCCCcCHHHHHHHh-CCCCEEEEEEcccCCCccchHHHHHHHHhhcCCCCcEEEeecCC
Q psy15351          6 KDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQ-NIRPMVLVLNKRDLINSKHESLIEEKVRKEQSHISEVIFTNCRN   84 (352)
Q Consensus         6 ~~~~~~i~~aD~vl~VvDar~p~~~~~~~l~~~l~-~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~v~~iSa~~   84 (352)
                      +.....+..+|++++|+|++++.......+.++++ .+.|+++|+||+|+.+...  ...++. +.+..  +++.+||++
T Consensus        71 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~--~~~~~~-~~~~~--~~~~~Sa~~  145 (161)
T 2dyk_A           71 EKVDRALEDAEVVLFAVDGRAELTQADYEVAEYLRRKGKPVILVATKVDDPKHEL--YLGPLY-GLGFG--DPIPTSSEH  145 (161)
T ss_dssp             HHHHHHTTTCSEEEEEEESSSCCCHHHHHHHHHHHHHTCCEEEEEECCCSGGGGG--GCGGGG-GGSSC--SCEECBTTT
T ss_pred             HHHHHHHHhCCEEEEEEECCCcccHhHHHHHHHHHhcCCCEEEEEECcccccchH--hHHHHH-hCCCC--CeEEEeccc
Confidence            34556789999999999999876655555656554 5789999999999976532  111222 34442  489999999


Q ss_pred             CCCCCHHHHHHHHHHHh
Q psy15351         85 PNCKGVQKILPTLQHIS  101 (352)
Q Consensus        85 ~~~~gi~~L~~~i~~~~  101 (352)
                      +  .|++++++++.+.+
T Consensus       146 ~--~gv~~l~~~l~~~l  160 (161)
T 2dyk_A          146 A--RGLEELLEAIWERL  160 (161)
T ss_dssp             T--BSHHHHHHHHHHHC
T ss_pred             C--CChHHHHHHHHHhC
Confidence            9  99999999987654

>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*

Probab=98.67  E-value=6.7e-08  Score=94.39  Aligned_cols=92  Identities=17%  Similarity=0.358  Sum_probs=69.2

Q ss_pred             HHHHHHHHhhccCEEEEEEcCCCCCCCcCHHHHHHHhCCCCEEEEEEcccCCCccchHHHHHHHHhhcCCCCcEEEeecC
Q psy15351          4 GLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHESLIEEKVRKEQSHISEVIFTNCR   83 (352)
Q Consensus         4 ~~~~~~~~i~~aD~vl~VvDar~p~~~~~~~l~~~l~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~v~~iSa~   83 (352)
                      +++.++..++.+|++|+|+|+.++.+..+..+.+.+ .++|+++|+||+|+.+....+++.+++ ..+.   +++.+||+
T Consensus       313 gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~il~~l-~~~piivV~NK~DL~~~~~~~~~~~~~-~~~~---~~i~iSAk  387 (482)
T 1xzp_A          313 GIERTLQEIEKADIVLFVLDASSPLDEEDRKILERI-KNKRYLVVINKVDVVEKINEEEIKNKL-GTDR---HMVKISAL  387 (482)
T ss_dssp             CHHHHHHHHHHCSEEEEEEETTSCCCHHHHHHHHHH-TTSSEEEEEEECSSCCCCCHHHHHHHH-TCST---TEEEEEGG
T ss_pred             HHHHHHHHhhcccEEEEEecCCCCCCHHHHHHHHHh-cCCCEEEEEECcccccccCHHHHHHHh-cCCC---cEEEEECC
Confidence            456788899999999999999887665444555555 588999999999997653333333332 2223   48999999


Q ss_pred             CCCCCCHHHHHHHHHHHhh
Q psy15351         84 NPNCKGVQKILPTLQHISD  102 (352)
Q Consensus        84 ~~~~~gi~~L~~~i~~~~~  102 (352)
                      ++  .|+++|+++|.+.+.
T Consensus       388 tg--~Gi~eL~~~l~~~~~  404 (482)
T 1xzp_A          388 KG--EGLEKLEESIYRETQ  404 (482)
T ss_dssp             GT--CCHHHHHHHHHHHTH
T ss_pred             CC--CCHHHHHHHHHHHHh
Confidence            99  999999999987654

>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*

Probab=98.64  E-value=1.2e-07  Score=90.82  Aligned_cols=99  Identities=10%  Similarity=0.133  Sum_probs=70.4

Q ss_pred             hHHHHHHHHhhccCEEEEEEcCCCCC-CCcCHHHHHHHh--CCCCEEEEEEcccCCCccchHHHHHHHHhh----cCCCC
Q psy15351          3 RGLKDIEKHLKNVDIVIEVHDSRMPF-TGRNHLLQQSVQ--NIRPMVLVLNKRDLINSKHESLIEEKVRKE----QSHIS   75 (352)
Q Consensus         3 ~~~~~~~~~i~~aD~vl~VvDar~p~-~~~~~~l~~~l~--~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~----~~~~~   75 (352)
                      +..+.+...+..+|++|+|+|++++. .....+....+.  ..+|+++|+||+|+++.+......+.+++.    +....
T Consensus        87 ~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~  166 (403)
T 3sjy_A           87 VLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIGVKNLIIVQNKVDVVSKEEALSQYRQIKQFTKGTWAENV  166 (403)
T ss_dssp             GGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSCHHHHHHHHHHHHHHHTTSTTTTC
T ss_pred             HHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcCCCCEEEEEECccccchHHHHHHHHHHHHHHHhhCCCCC
Confidence            45677888899999999999999875 222222223332  457999999999999876444443333322    22222


Q ss_pred             cEEEeecCCCCCCCHHHHHHHHHHHhhh
Q psy15351         76 EVIFTNCRNPNCKGVQKILPTLQHISDN  103 (352)
Q Consensus        76 ~v~~iSa~~~~~~gi~~L~~~i~~~~~~  103 (352)
                      +++++||+++  .|+++|+++|.+.++.
T Consensus       167 ~ii~vSA~~g--~gi~~L~~~l~~~l~~  192 (403)
T 3sjy_A          167 PIIPVSALHK--INIDSLIEGIEEYIKT  192 (403)
T ss_dssp             CEEECBTTTT--BSHHHHHHHHHHHSCC
T ss_pred             EEEEEECCCC--cChHHHHHHHHHhCCC
Confidence            5999999999  9999999999987654

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=98.64  E-value=3.1e-08  Score=82.42  Aligned_cols=61  Identities=16%  Similarity=0.212  Sum_probs=38.9

Q ss_pred             cceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCC-CcEEEEeCCCCCC
Q psy15351        167 YNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEK-PLIYILDTPGISL  233 (352)
Q Consensus       167 ~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~-~~~~l~DtPGi~~  233 (352)
                      ..++|+++|.+|||||||+|+|.+     .....+.+.+|+|.... .+...+. -.+.++||||...
T Consensus         3 ~~~ki~i~G~~~vGKSsl~~~l~~-----~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~D~~g~~~   64 (175)
T 2nzj_A            3 ALYRVVLLGDPGVGKTSLASLFAG-----KQERDLHEQLGEDVYER-TLTVDGEDTTLVVVDTWEAEK   64 (175)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHC-----C-----CCCSSSSEEEE-EEEETTEEEEEEEECCC----
T ss_pred             eEEEEEEECCCCccHHHHHHHHhc-----CCCccccCccccceeEE-EEEECCEEEEEEEEecCCCCc
Confidence            458999999999999999999997     34445566788776432 2333221 2578999999864

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=98.60  E-value=4.1e-08  Score=81.20  Aligned_cols=62  Identities=24%  Similarity=0.300  Sum_probs=43.4

Q ss_pred             cceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecC-CCcEEEEeCCCCCC
Q psy15351        167 YNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISE-KPLIYILDTPGISL  233 (352)
Q Consensus       167 ~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~-~~~~~l~DtPGi~~  233 (352)
                      +.++|+++|.+|||||||+|+|.+..    ......+.+|++..... +.... ...+.++||||...
T Consensus         5 ~~~~i~v~G~~~~GKSsli~~l~~~~----~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~Dt~G~~~   67 (170)
T 1z0j_A            5 RELKVCLLGDTGVGKSSIMWRFVEDS----FDPNINPTIGASFMTKT-VQYQNELHKFLIWDTAGLER   67 (170)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHHSC----CCTTCCCCCSEEEEEEE-EEETTEEEEEEEEEECCSGG
T ss_pred             cceEEEEECcCCCCHHHHHHHHHcCC----CCCCCCCceeEEEEEEE-EEECCeEEEEEEEcCCCchh
Confidence            45899999999999999999999732    12345566777665432 22222 23688999999743

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=98.59  E-value=6.3e-08  Score=88.40  Aligned_cols=40  Identities=20%  Similarity=0.176  Sum_probs=28.3

Q ss_pred             cceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCC
Q psy15351        167 YNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAG  206 (352)
Q Consensus       167 ~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg  206 (352)
                      ..++|+++|.||||||||+|+|++..........++..|+
T Consensus        25 ~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~   64 (299)
T 2aka_B           25 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPL   64 (299)
T ss_dssp             CCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCE
T ss_pred             CCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccce
Confidence            4579999999999999999999984322111114455565

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=98.58  E-value=8.4e-08  Score=81.69  Aligned_cols=90  Identities=21%  Similarity=0.186  Sum_probs=63.7

Q ss_pred             HHhhccCEEEEEEcCCCCCCCcC--HHHHHHHhC-----------CCCEEEEEEcccCCCccchHHHHHHHH------hh
Q psy15351         10 KHLKNVDIVIEVHDSRMPFTGRN--HLLQQSVQN-----------IRPMVLVLNKRDLINSKHESLIEEKVR------KE   70 (352)
Q Consensus        10 ~~i~~aD~vl~VvDar~p~~~~~--~~l~~~l~~-----------~k~~ilVlNK~Dl~~~~~~~~~~~~~~------~~   70 (352)
                      ..+..+|++|+|+|+.++.+...  ..+..++..           +.|+++|+||+|+.+.....++.+.+.      ..
T Consensus        82 ~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~  161 (199)
T 4bas_A           82 TYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTAAELVEILDLTTLMGDH  161 (199)
T ss_dssp             GGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCHHHHHHHHTHHHHHTTS
T ss_pred             HHHhcCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCCHHHHHHHhcchhhccCC
Confidence            45789999999999997643211  223333322           789999999999987754444444331      12


Q ss_pred             cCCCCcEEEeecCCCCCCCHHHHHHHHHHHhhhc
Q psy15351         71 QSHISEVIFTNCRNPNCKGVQKILPTLQHISDNM  104 (352)
Q Consensus        71 ~~~~~~v~~iSa~~~~~~gi~~L~~~i~~~~~~~  104 (352)
                      +.   +++.+||+++  .|+++++++|.+.+...
T Consensus       162 ~~---~~~~~Sa~~g--~gv~~l~~~l~~~~~~~  190 (199)
T 4bas_A          162 PF---VIFASNGLKG--TGVHEGFSWLQETASRQ  190 (199)
T ss_dssp             CE---EEEECBTTTT--BTHHHHHHHHHHHHHHH
T ss_pred             ee---EEEEeeCCCc--cCHHHHHHHHHHHHHHH
Confidence            23   4889999999  99999999998776543

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=98.58  E-value=3.9e-08  Score=82.18  Aligned_cols=62  Identities=26%  Similarity=0.378  Sum_probs=43.5

Q ss_pred             CcceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCCcEEEEeCCCCCC
Q psy15351        166 VYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISL  233 (352)
Q Consensus       166 ~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~~  233 (352)
                      ...++|+++|.+|||||||+|+|.+.      ....+..|++|.+.........+..+.++||||...
T Consensus         6 ~~~~~i~v~G~~~~GKssl~~~l~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~   67 (178)
T 2lkc_A            6 ERPPVVTIMGHVDHGKTTLLDAIRHS------KVTEQEAGGITQHIGAYQVTVNDKKITFLDTPGHEA   67 (178)
T ss_dssp             CCCCEEEEESCTTTTHHHHHHHHHTT------CSSCSSCCSSSTTCCCCEEEETTEEEEESCCCSSSS
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCC------ccccCCCCceeEeeeEEEEEeCCceEEEEECCCCHH
Confidence            45689999999999999999999963      223344566655443222223455789999999754

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=98.57  E-value=1.8e-07  Score=77.35  Aligned_cols=92  Identities=17%  Similarity=0.098  Sum_probs=63.9

Q ss_pred             HHHhhccCEEEEEEcCCCCCCCc--CHHHHHHHh----CCCCEEEEEEcccCCCccchHHHHHHHHhhcCC--CCcEEEe
Q psy15351          9 EKHLKNVDIVIEVHDSRMPFTGR--NHLLQQSVQ----NIRPMVLVLNKRDLINSKHESLIEEKVRKEQSH--ISEVIFT   80 (352)
Q Consensus         9 ~~~i~~aD~vl~VvDar~p~~~~--~~~l~~~l~----~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~--~~~v~~i   80 (352)
                      ...+..+|++++|+|+.++.+..  ...+..++.    .+.|+++|+||+|+.+.....++.+.+......  ..+++.+
T Consensus        69 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (171)
T 1upt_A           69 RCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKT  148 (171)
T ss_dssp             GGGCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCTTSCEEEEEC
T ss_pred             HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCCCHHHHHHHhCchhccCCceEEEEC
Confidence            34678999999999998874322  223334433    378999999999998765444554444221111  0148899


Q ss_pred             ecCCCCCCCHHHHHHHHHHHhh
Q psy15351         81 NCRNPNCKGVQKILPTLQHISD  102 (352)
Q Consensus        81 Sa~~~~~~gi~~L~~~i~~~~~  102 (352)
                      ||+++  .|++++++++.+.+.
T Consensus       149 Sa~~~--~gi~~l~~~l~~~i~  168 (171)
T 1upt_A          149 SATKG--TGLDEAMEWLVETLK  168 (171)
T ss_dssp             CTTTC--TTHHHHHHHHHHHHH
T ss_pred             cCCCC--cCHHHHHHHHHHHHh
Confidence            99999  999999999987665

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=98.57  E-value=9.2e-08  Score=79.89  Aligned_cols=62  Identities=16%  Similarity=0.127  Sum_probs=40.9

Q ss_pred             CcceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCC--CcEEEEeCCCCCC
Q psy15351        166 VYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEK--PLIYILDTPGISL  233 (352)
Q Consensus       166 ~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~--~~~~l~DtPGi~~  233 (352)
                      ...++|+++|.+|||||||+|+|.+.      .......|++|.+.........+  ..+.++||||...
T Consensus         7 ~~~~~i~v~G~~~~GKssl~~~l~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~   70 (181)
T 3tw8_B            7 DHLFKLLIIGDSGVGKSSLLLRFADN------TFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQER   70 (181)
T ss_dssp             CEEEEEEEECCTTSCHHHHHHHHCSC------C---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGG
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhcC------CCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchh
Confidence            45689999999999999999999862      22234455555544322222233  2588999999543

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=98.56  E-value=1.5e-07  Score=79.78  Aligned_cols=92  Identities=23%  Similarity=0.251  Sum_probs=66.8

Q ss_pred             HHHHhhccCEEEEEEcCCCCCCCcCH----HHHHHHh------CCCCEEEEEEcccCCCccchHHHHHHHHhhcCCCCcE
Q psy15351          8 IEKHLKNVDIVIEVHDSRMPFTGRNH----LLQQSVQ------NIRPMVLVLNKRDLINSKHESLIEEKVRKEQSHISEV   77 (352)
Q Consensus         8 ~~~~i~~aD~vl~VvDar~p~~~~~~----~l~~~l~------~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~v   77 (352)
                      ....+..+|++|+|+|+.++....+.    .+..++.      .+.|+++|+||+|+.+....++..+++.+.+..  ++
T Consensus        91 ~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~--~~  168 (198)
T 3t1o_A           91 RKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVIQVNKRDLPDALPVEMVRAVVDPEGKF--PV  168 (198)
T ss_dssp             HHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSCEEEEEECTTSTTCCCHHHHHHHHCTTCCS--CE
T ss_pred             HHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCCEEEEEEchhcccccCHHHHHHHHHhcCCc--eE
Confidence            34578899999999999854322222    2223332      468999999999998765556666666555651  39


Q ss_pred             EEeecCCCCCCCHHHHHHHHHHHhhh
Q psy15351         78 IFTNCRNPNCKGVQKILPTLQHISDN  103 (352)
Q Consensus        78 ~~iSa~~~~~~gi~~L~~~i~~~~~~  103 (352)
                      +.+||+++  .|+++++++|.+.+..
T Consensus       169 ~~~Sa~~~--~gv~~l~~~l~~~i~~  192 (198)
T 3t1o_A          169 LEAVATEG--KGVFETLKEVSRLVLA  192 (198)
T ss_dssp             EECBGGGT--BTHHHHHHHHHHHHHH
T ss_pred             EEEecCCC--cCHHHHHHHHHHHHHH
Confidence            99999999  9999999998876543

>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}

Probab=98.56  E-value=3.2e-08  Score=98.34  Aligned_cols=40  Identities=28%  Similarity=0.298  Sum_probs=32.1

Q ss_pred             CcceEEEEeCCCCCChHHHHHHHhCCCCCCCCce--ecCCCCCceeE
Q psy15351        166 VYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAV--PVGPKAGVTRS  210 (352)
Q Consensus       166 ~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~--~~~~~pg~T~~  210 (352)
                      ...++|+++|.+|+|||||+|+|++     ....  .++..|+||+.
T Consensus        63 ~~~~~V~vvG~~n~GKSTLIN~Llg-----~~~~~~~vs~~p~T~~~  104 (550)
T 2qpt_A           63 DGKPMVLVAGQYSTGKTSFIQYLLE-----QEVPGSRVGPEPTTDCF  104 (550)
T ss_dssp             SSCCEEEEEEBTTSCHHHHHHHHHT-----SCCSSCCCCSSCCCCSE
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhC-----CccccCccCCCCccceE
Confidence            3468999999999999999999997     3332  57788888663

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=98.55  E-value=4.8e-08  Score=80.63  Aligned_cols=59  Identities=20%  Similarity=0.262  Sum_probs=34.3

Q ss_pred             ceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecC-CCcEEEEeCCCCCC
Q psy15351        168 NTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISE-KPLIYILDTPGISL  233 (352)
Q Consensus       168 ~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~-~~~~~l~DtPGi~~  233 (352)
                      .++|+++|.+|||||||+|++.+     .....+++.+|+|....  +.... ...+.++||||...
T Consensus         2 ~~ki~~vG~~~~GKSsli~~l~~-----~~~~~~~~~~~~~~~~~--~~~~~~~~~~~i~D~~g~~~   61 (166)
T 3q72_A            2 VYKVLLLGAPGVGKSALARIFGG-----VEDGPEAEAAGHTYDRS--IVVDGEEASLMVYDIWEQDG   61 (166)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHCC-----C----------CEEEEE--EEETTEEEEEEEEECC----
T ss_pred             eEEEEEECCCCCCHHHHHHHHcC-----ccccCCCCccccceEEE--EEECCEEEEEEEEECCCCcc
Confidence            47899999999999999999986     44556778888887632  22222 22578999999764

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*

Probab=98.55  E-value=9.6e-08  Score=93.16  Aligned_cols=91  Identities=13%  Similarity=0.171  Sum_probs=64.1

Q ss_pred             HHHHHHHhhccCEEEEEEcCCCCCCCc----CHHHHHHHhCCCCEEEEEEcccCCCccchHHHHHHHHhhcCCCCcEEEe
Q psy15351          5 LKDIEKHLKNVDIVIEVHDSRMPFTGR----NHLLQQSVQNIRPMVLVLNKRDLINSKHESLIEEKVRKEQSHISEVIFT   80 (352)
Q Consensus         5 ~~~~~~~i~~aD~vl~VvDar~p~~~~----~~~l~~~l~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~v~~i   80 (352)
                      ++.+...+..+|++|+|+|+.++.+..    ...+.+.+ .++|+++|+||+|+.+......  +.+.+.+..  +++.+
T Consensus       303 i~~~~~~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l-~~~piIvV~NK~Dl~~~~~~~~--~~l~~~~~~--~~i~v  377 (476)
T 3gee_A          303 IRRSRMKMAEADLILYLLDLGTERLDDELTEIRELKAAH-PAAKFLTVANKLDRAANADALI--RAIADGTGT--EVIGI  377 (476)
T ss_dssp             -----CCCSSCSEEEEEEETTTCSSGGGHHHHHHHHHHC-TTSEEEEEEECTTSCTTTHHHH--HHHHHHHTS--CEEEC
T ss_pred             HHHHHhhcccCCEEEEEEECCCCcchhhhHHHHHHHHhc-CCCCEEEEEECcCCCCccchhH--HHHHhcCCC--ceEEE
Confidence            355666889999999999999886652    22233333 5789999999999987654322  333333222  59999


Q ss_pred             ecCCCCCCCHHHHHHHHHHHhh
Q psy15351         81 NCRNPNCKGVQKILPTLQHISD  102 (352)
Q Consensus        81 Sa~~~~~~gi~~L~~~i~~~~~  102 (352)
                      ||+++  .|+++|+++|.+.+.
T Consensus       378 SAktg--~GI~eL~~~i~~~~~  397 (476)
T 3gee_A          378 SALNG--DGIDTLKQHMGDLVK  397 (476)
T ss_dssp             BTTTT--BSHHHHHHHHTHHHH
T ss_pred             EECCC--CCHHHHHHHHHHHHh
Confidence            99999  999999999988776

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=98.55  E-value=7.5e-08  Score=80.77  Aligned_cols=89  Identities=10%  Similarity=0.014  Sum_probs=60.6

Q ss_pred             HHhhccCEEEEEEcCCCCCCCcC--HHHHHHHh----CCCCEEEEEEcccCCCccc--hHHHHHHHHhhcCCCCcEEEee
Q psy15351         10 KHLKNVDIVIEVHDSRMPFTGRN--HLLQQSVQ----NIRPMVLVLNKRDLINSKH--ESLIEEKVRKEQSHISEVIFTN   81 (352)
Q Consensus        10 ~~i~~aD~vl~VvDar~p~~~~~--~~l~~~l~----~~k~~ilVlNK~Dl~~~~~--~~~~~~~~~~~~~~~~~v~~iS   81 (352)
                      ..+..+|++++|+|+.++.+...  ..+..+..    .+.|+++|+||+|+.+...  ..+..++.+..+..   ++.+|
T Consensus        73 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~---~~~~S  149 (181)
T 3t5g_A           73 TYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAA---FLESS  149 (181)
T ss_dssp             GGTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCE---EEECC
T ss_pred             HHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcceecHHHHHHHHHHhCCc---EEEEe
Confidence            35678999999999986532211  11112222    3689999999999975433  23444444455554   89999


Q ss_pred             cCCCCCCCHHHHHHHHHHHhhh
Q psy15351         82 CRNPNCKGVQKILPTLQHISDN  103 (352)
Q Consensus        82 a~~~~~~gi~~L~~~i~~~~~~  103 (352)
                      |+++  .|++++++.+.+.+..
T Consensus       150 a~~~--~~v~~l~~~l~~~~~~  169 (181)
T 3t5g_A          150 AKEN--QTAVDVFRRIILEAEK  169 (181)
T ss_dssp             TTSH--HHHHHHHHHHHHHHHT
T ss_pred             cCCC--CCHHHHHHHHHHHHHH
Confidence            9999  9999999999877654

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=98.54  E-value=1.7e-07  Score=77.05  Aligned_cols=93  Identities=18%  Similarity=0.083  Sum_probs=62.2

Q ss_pred             HHHHhhccCEEEEEEcCCCCCCCc--CHHHHHHHh----CCCCEEEEEEcccCCCccchHHHHHHHHhhcCC--CCcEEE
Q psy15351          8 IEKHLKNVDIVIEVHDSRMPFTGR--NHLLQQSVQ----NIRPMVLVLNKRDLINSKHESLIEEKVRKEQSH--ISEVIF   79 (352)
Q Consensus         8 ~~~~i~~aD~vl~VvDar~p~~~~--~~~l~~~l~----~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~--~~~v~~   79 (352)
                      ....+.++|++++|+|++++.+..  ...+..++.    .+.|+++|+||+|+.+.....++.+.+......  .-+++.
T Consensus        61 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (164)
T 1r8s_A           61 WRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQA  140 (164)
T ss_dssp             HHHHTTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEE
T ss_pred             HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCCCCHHHHHHHhCcccccCccEEEEE
Confidence            345689999999999998763221  122333332    378999999999998764444444433211110  014889


Q ss_pred             eecCCCCCCCHHHHHHHHHHHhh
Q psy15351         80 TNCRNPNCKGVQKILPTLQHISD  102 (352)
Q Consensus        80 iSa~~~~~~gi~~L~~~i~~~~~  102 (352)
                      +||+++  .|++++++++.+.+.
T Consensus       141 ~Sa~~~--~gi~~l~~~l~~~i~  161 (164)
T 1r8s_A          141 TCATSG--DGLYEGLDWLSNQLR  161 (164)
T ss_dssp             CBTTTT--BTHHHHHHHHHHHC-
T ss_pred             cccCCC--cCHHHHHHHHHHHHh
Confidence            999999  999999999887654

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=98.54  E-value=1.3e-07  Score=79.99  Aligned_cols=94  Identities=14%  Similarity=0.039  Sum_probs=64.2

Q ss_pred             HHHhhccCEEEEEEcCCCCCCCc--CHHHHHHHh----CCCCEEEEEEcccCCCccchHHHHHHHHhhcCC--CCcEEEe
Q psy15351          9 EKHLKNVDIVIEVHDSRMPFTGR--NHLLQQSVQ----NIRPMVLVLNKRDLINSKHESLIEEKVRKEQSH--ISEVIFT   80 (352)
Q Consensus         9 ~~~i~~aD~vl~VvDar~p~~~~--~~~l~~~l~----~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~--~~~v~~i   80 (352)
                      ...+..+|++++|+|++++.+..  ...+..+++    .+.|+++|+||+|+.+.....++.+.+......  ..+++.+
T Consensus        78 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~  157 (187)
T 1zj6_A           78 NTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQAC  157 (187)
T ss_dssp             HHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEEEC
T ss_pred             HHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcCCCCHHHHHHHhChhhhcCCCcEEEEc
Confidence            35678999999999998874322  122333332    368999999999998754444554544321111  1148899


Q ss_pred             ecCCCCCCCHHHHHHHHHHHhhhc
Q psy15351         81 NCRNPNCKGVQKILPTLQHISDNM  104 (352)
Q Consensus        81 Sa~~~~~~gi~~L~~~i~~~~~~~  104 (352)
                      ||+++  .|+++++++|.+.+...
T Consensus       158 Sa~~g--~gi~~l~~~l~~~~~~~  179 (187)
T 1zj6_A          158 CALTG--EGLCQGLEWMMSRLKIR  179 (187)
T ss_dssp             BTTTT--BTHHHHHHHHHHHHCC-
T ss_pred             cCCCC--cCHHHHHHHHHHHHHHH
Confidence            99999  99999999998877543

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=98.54  E-value=1.2e-07  Score=80.44  Aligned_cols=92  Identities=17%  Similarity=0.129  Sum_probs=62.3

Q ss_pred             HHhhccCEEEEEEcCCCCCCCc--CHHHHHHHh------CCCCEEEEEEcccCCCccchHHHHHHHHhhcCC--CCcEEE
Q psy15351         10 KHLKNVDIVIEVHDSRMPFTGR--NHLLQQSVQ------NIRPMVLVLNKRDLINSKHESLIEEKVRKEQSH--ISEVIF   79 (352)
Q Consensus        10 ~~i~~aD~vl~VvDar~p~~~~--~~~l~~~l~------~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~--~~~v~~   79 (352)
                      ..+.++|++++|+|++++.+..  ...+..++.      .+.|+++|+||+|+.+....+++.+.+....+.  ..+++.
T Consensus        86 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (190)
T 2h57_A           86 HYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDAVTSVKVSQLLCLENIKDKPWHICA  165 (190)
T ss_dssp             GGGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEEE
T ss_pred             HHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccCCCHHHHHHHhChhhccCCceEEEE
Confidence            5678999999999998753221  123333333      267999999999998765445555554211110  114889


Q ss_pred             eecCCCCCCCHHHHHHHHHHHhhh
Q psy15351         80 TNCRNPNCKGVQKILPTLQHISDN  103 (352)
Q Consensus        80 iSa~~~~~~gi~~L~~~i~~~~~~  103 (352)
                      +||+++  .|+++++++|.+.+..
T Consensus       166 ~Sa~~~--~gi~~l~~~l~~~i~~  187 (190)
T 2h57_A          166 SDAIKG--EGLQEGVDWLQDQIQT  187 (190)
T ss_dssp             CBTTTT--BTHHHHHHHHHHHC--
T ss_pred             ccCCCC--cCHHHHHHHHHHHHHH
Confidence            999999  9999999999876643

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=98.53  E-value=3.4e-07  Score=76.82  Aligned_cols=89  Identities=22%  Similarity=0.211  Sum_probs=62.3

Q ss_pred             HHHhhccCEEEEEEcCCCCCCCcC--HHHHHHH---h-CCCCEEEEEEcccCCCccc--hHHHHHHHHhhcCCCCcEEEe
Q psy15351          9 EKHLKNVDIVIEVHDSRMPFTGRN--HLLQQSV---Q-NIRPMVLVLNKRDLINSKH--ESLIEEKVRKEQSHISEVIFT   80 (352)
Q Consensus         9 ~~~i~~aD~vl~VvDar~p~~~~~--~~l~~~l---~-~~k~~ilVlNK~Dl~~~~~--~~~~~~~~~~~~~~~~~v~~i   80 (352)
                      ...+..+|++++|+|+.++.+...  ..+..+.   . .+.|+++|+||+|+.+...  ..+..++.+..+.+   ++.+
T Consensus        84 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~---~~~~  160 (183)
T 3kkq_A           84 EQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIP---YIET  160 (183)
T ss_dssp             HHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTCC---EEEE
T ss_pred             HHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHHHHHHhCCe---EEEe
Confidence            356788999999999987632221  1122222   2 5689999999999976432  23344444455665   9999


Q ss_pred             ecC-CCCCCCHHHHHHHHHHHhh
Q psy15351         81 NCR-NPNCKGVQKILPTLQHISD  102 (352)
Q Consensus        81 Sa~-~~~~~gi~~L~~~i~~~~~  102 (352)
                      ||+ ++  .|+++++++|.+.+.
T Consensus       161 Sa~~~~--~~v~~l~~~l~~~i~  181 (183)
T 3kkq_A          161 SAKDPP--LNVDKTFHDLVRVIR  181 (183)
T ss_dssp             BCSSSC--BSHHHHHHHHHHHHH
T ss_pred             ccCCCC--CCHHHHHHHHHHHHh
Confidence            999 99  999999999887654

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=98.53  E-value=1.8e-07  Score=78.21  Aligned_cols=91  Identities=11%  Similarity=0.045  Sum_probs=63.1

Q ss_pred             HHHHhhccCEEEEEEcCCCCCCCcC--HHHHHHHh---CCCCEEEEEEcccCCCccc--hHHHHHHHHhhcCCCCcEEEe
Q psy15351          8 IEKHLKNVDIVIEVHDSRMPFTGRN--HLLQQSVQ---NIRPMVLVLNKRDLINSKH--ESLIEEKVRKEQSHISEVIFT   80 (352)
Q Consensus         8 ~~~~i~~aD~vl~VvDar~p~~~~~--~~l~~~l~---~~k~~ilVlNK~Dl~~~~~--~~~~~~~~~~~~~~~~~v~~i   80 (352)
                      ....+..+|++++|+|+.++.+..+  ..+..+..   .+.|+++|+||+|+.++..  ..+..++.+..+..   ++.+
T Consensus        77 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~---~~~~  153 (180)
T 2g6b_A           77 THAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLP---FMET  153 (180)
T ss_dssp             --CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCCSCHHHHHHHHHHHTCC---EEEC
T ss_pred             HHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccCcccccCHHHHHHHHHHcCCe---EEEE
Confidence            3456789999999999987643222  11222221   4689999999999986532  23344444455665   9999


Q ss_pred             ecCCCCCCCHHHHHHHHHHHhhh
Q psy15351         81 NCRNPNCKGVQKILPTLQHISDN  103 (352)
Q Consensus        81 Sa~~~~~~gi~~L~~~i~~~~~~  103 (352)
                      ||+++  .|++++++++.+.+..
T Consensus       154 Sa~~~--~gi~~l~~~l~~~~~~  174 (180)
T 2g6b_A          154 SAKTG--LNVDLAFTAIAKELKR  174 (180)
T ss_dssp             CTTTC--TTHHHHHHHHHHHHHC
T ss_pred             eCCCC--CCHHHHHHHHHHHHHH
Confidence            99999  9999999999876654

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=98.53  E-value=1.4e-07  Score=77.76  Aligned_cols=90  Identities=13%  Similarity=0.053  Sum_probs=61.9

Q ss_pred             HHHHhhccCEEEEEEcCCCCCCCcC--HHHHHHHh---CCCCEEEEEEcccCCCccc--hHHHHHHHHhhcCCCCcEEEe
Q psy15351          8 IEKHLKNVDIVIEVHDSRMPFTGRN--HLLQQSVQ---NIRPMVLVLNKRDLINSKH--ESLIEEKVRKEQSHISEVIFT   80 (352)
Q Consensus         8 ~~~~i~~aD~vl~VvDar~p~~~~~--~~l~~~l~---~~k~~ilVlNK~Dl~~~~~--~~~~~~~~~~~~~~~~~v~~i   80 (352)
                      ....+..+|++++|+|+.++.+...  ..+..+..   ...|+++|+||+|+.++..  ..+..++....+..   ++.+
T Consensus        72 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~---~~~~  148 (170)
T 1r2q_A           72 APMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLL---FMET  148 (170)
T ss_dssp             HHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCE---EEEC
T ss_pred             hHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccccCHHHHHHHHHHcCCe---EEEE
Confidence            3456789999999999987632211  11222222   3678899999999975432  23444444445554   8999


Q ss_pred             ecCCCCCCCHHHHHHHHHHHhh
Q psy15351         81 NCRNPNCKGVQKILPTLQHISD  102 (352)
Q Consensus        81 Sa~~~~~~gi~~L~~~i~~~~~  102 (352)
                      ||+++  .|+++++++|.+.++
T Consensus       149 Sa~~g--~gi~~l~~~i~~~~~  168 (170)
T 1r2q_A          149 SAKTS--MNVNEIFMAIAKKLP  168 (170)
T ss_dssp             CTTTC--TTHHHHHHHHHHTSC
T ss_pred             eCCCC--CCHHHHHHHHHHHHh
Confidence            99999  999999999887654

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=98.53  E-value=1.5e-07  Score=78.65  Aligned_cols=63  Identities=19%  Similarity=0.170  Sum_probs=39.9

Q ss_pred             CcceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCC--cEEEEeCCCCCC
Q psy15351        166 VYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKP--LIYILDTPGISL  233 (352)
Q Consensus       166 ~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~--~~~l~DtPGi~~  233 (352)
                      ...++|+++|.+|||||||+|+|.+.     ........|.++.+.........+.  .+.++||||...
T Consensus         8 ~~~~~i~v~G~~~~GKssli~~l~~~-----~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~   72 (180)
T 2g6b_A            8 DVAFKVMLVGDSGVGKTCLLVRFKDG-----AFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQER   72 (180)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHS-----CCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHhC-----CCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHH
Confidence            45689999999999999999999863     2222233344444433222122222  588999999653

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*

Probab=98.52  E-value=8.3e-08  Score=88.43  Aligned_cols=61  Identities=18%  Similarity=0.169  Sum_probs=46.6

Q ss_pred             cceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEe-cCCCcEEEEeCCCCC
Q psy15351        167 YNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKI-SEKPLIYILDTPGIS  232 (352)
Q Consensus       167 ~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~-~~~~~~~l~DtPGi~  232 (352)
                      ..++|+++|.||||||||+|++.+     .....+++.+|+|.+....... .++-.+.++||||..
T Consensus         2 ~~~KI~lvG~~~vGKSSLi~~l~~-----~~~~~~~~~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~   63 (307)
T 3r7w_A            2 LGSKLLLMGRSGSGKSSMRSIIFS-----NYSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQD   63 (307)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHS-----CCCTGGGGGCCCCCSEEEEEEEETTTEEEEEEEECCSH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHh-----CCCCccccCcCCccceEEEEEEeCCceEEEEEECCCcH
Confidence            357899999999999999999986     3345566788888887543322 244478999999964

>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*

Probab=98.52  E-value=2.8e-07  Score=90.19  Aligned_cols=97  Identities=11%  Similarity=0.147  Sum_probs=69.9

Q ss_pred             HHHHHHHHhhccCEEEEEEcCCCCCCCcCHHHHHHHh-CCCCEEEEEEcccCCCccchH----HHHHHHHhh-cCCCCcE
Q psy15351          4 GLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQ-NIRPMVLVLNKRDLINSKHES----LIEEKVRKE-QSHISEV   77 (352)
Q Consensus         4 ~~~~~~~~i~~aD~vl~VvDar~p~~~~~~~l~~~l~-~~k~~ilVlNK~Dl~~~~~~~----~~~~~~~~~-~~~~~~v   77 (352)
                      ..+.+...+..+|++|+|+|++++......+...+++ .+.|.++|+||+|+.+++..+    ++.+++... ++...++
T Consensus        86 ~~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~i  165 (482)
T 1wb1_A           86 LIRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDHFNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSI  165 (482)
T ss_dssp             HHHHHHHHTTSCCEEEEEEETTTCSCHHHHHHHHHHHHTTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCE
T ss_pred             HHHHHHHHHhhCCEEEEEEecCCCccHHHHHHHHHHHHcCCCEEEEEECCCcccchhHHHHHHHHHHHHhhhcccccceE
Confidence            4566778899999999999999875443333333333 578889999999999754332    233344433 2222259


Q ss_pred             EEeecCCCCCCCHHHHHHHHHHHhh
Q psy15351         78 IFTNCRNPNCKGVQKILPTLQHISD  102 (352)
Q Consensus        78 ~~iSa~~~~~~gi~~L~~~i~~~~~  102 (352)
                      +++||+++  .|+++|+++|.+.++
T Consensus       166 i~vSA~~g--~gI~~L~~~L~~~i~  188 (482)
T 1wb1_A          166 IPISAKTG--FGVDELKNLIITTLN  188 (482)
T ss_dssp             EECCTTTC--TTHHHHHHHHHHHHH
T ss_pred             EEEECcCC--CCHHHHHHHHHHhhc
Confidence            99999999  999999999988765

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=98.51  E-value=1.7e-07  Score=78.99  Aligned_cols=93  Identities=16%  Similarity=0.070  Sum_probs=64.0

Q ss_pred             HHHhhccCEEEEEEcCCCCCCCcC--HHHHHHHh----CCCCEEEEEEcccCCCccchHHHHHHHHhhcC--CCCcEEEe
Q psy15351          9 EKHLKNVDIVIEVHDSRMPFTGRN--HLLQQSVQ----NIRPMVLVLNKRDLINSKHESLIEEKVRKEQS--HISEVIFT   80 (352)
Q Consensus         9 ~~~i~~aD~vl~VvDar~p~~~~~--~~l~~~l~----~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~--~~~~v~~i   80 (352)
                      ...+..+|++++|+|+.++.+..+  ..+.++++    .+.|+++|+||+|+.+.....++.+.+.....  ...+++.+
T Consensus        80 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (186)
T 1ksh_A           80 RNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALELDSIRSHHWRIQGC  159 (186)
T ss_dssp             GGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEEC
T ss_pred             HHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCCCCHHHHHHHhChhhccCCceEEEEe
Confidence            346789999999999987643221  22333332    36899999999999876554455444421111  11148899


Q ss_pred             ecCCCCCCCHHHHHHHHHHHhhh
Q psy15351         81 NCRNPNCKGVQKILPTLQHISDN  103 (352)
Q Consensus        81 Sa~~~~~~gi~~L~~~i~~~~~~  103 (352)
                      ||+++  .|++++++++.+.+.+
T Consensus       160 Sa~~~--~gi~~l~~~l~~~i~~  180 (186)
T 1ksh_A          160 SAVTG--EDLLPGIDWLLDDISS  180 (186)
T ss_dssp             CTTTC--TTHHHHHHHHHHHHHT
T ss_pred             eCCCC--CCHHHHHHHHHHHHHh
Confidence            99999  9999999999877754

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=98.51  E-value=4.4e-07  Score=76.54  Aligned_cols=92  Identities=16%  Similarity=0.042  Sum_probs=65.2

Q ss_pred             HHHHHhhccCEEEEEEcCCCCCCCcC-HHHH-HHHh----CCCCEEEEEEcccCCCccc--hHHHHHHHHhhcCCCCcEE
Q psy15351          7 DIEKHLKNVDIVIEVHDSRMPFTGRN-HLLQ-QSVQ----NIRPMVLVLNKRDLINSKH--ESLIEEKVRKEQSHISEVI   78 (352)
Q Consensus         7 ~~~~~i~~aD~vl~VvDar~p~~~~~-~~l~-~~l~----~~k~~ilVlNK~Dl~~~~~--~~~~~~~~~~~~~~~~~v~   78 (352)
                      .....+..+|++++|+|+.++.+..+ ..+. .+..    .+.|+++|+||+|+.+...  .....++....+..   ++
T Consensus        86 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~---~~  162 (195)
T 3bc1_A           86 LTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARELAEKYGIP---YF  162 (195)
T ss_dssp             HHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCC---EE
T ss_pred             HHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCC---EE
Confidence            35567899999999999987643322 1122 2221    3789999999999976432  23444444455665   99


Q ss_pred             EeecCCCCCCCHHHHHHHHHHHhhh
Q psy15351         79 FTNCRNPNCKGVQKILPTLQHISDN  103 (352)
Q Consensus        79 ~iSa~~~~~~gi~~L~~~i~~~~~~  103 (352)
                      .+||+++  .|+++++++|.+.+..
T Consensus       163 ~~Sa~~~--~~v~~l~~~l~~~~~~  185 (195)
T 3bc1_A          163 ETSAANG--TNISHAIEMLLDLIMK  185 (195)
T ss_dssp             ECCTTTC--TTHHHHHHHHHHHHHH
T ss_pred             EEECCCC--CCHHHHHHHHHHHHHH
Confidence            9999999  9999999998876643

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=98.51  E-value=2.9e-07  Score=76.65  Aligned_cols=89  Identities=10%  Similarity=0.013  Sum_probs=62.9

Q ss_pred             HHHHhhccCEEEEEEcCCCCCCCcCH-HHH-HHHh---CCCCEEEEEEcccCCCccc--hHHHHHHHHhhcCCCCcEEEe
Q psy15351          8 IEKHLKNVDIVIEVHDSRMPFTGRNH-LLQ-QSVQ---NIRPMVLVLNKRDLINSKH--ESLIEEKVRKEQSHISEVIFT   80 (352)
Q Consensus         8 ~~~~i~~aD~vl~VvDar~p~~~~~~-~l~-~~l~---~~k~~ilVlNK~Dl~~~~~--~~~~~~~~~~~~~~~~~v~~i   80 (352)
                      ....+..+|++++|+|+.++.+..+. .+. .+..   .+.|+++|+||+|+.+...  .++..++.++.+..   ++.+
T Consensus        81 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~---~~~~  157 (179)
T 1z0f_A           81 TRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLL---FLEA  157 (179)
T ss_dssp             HHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCE---EEEC
T ss_pred             HHHHhccCCEEEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCE---EEEE
Confidence            45678899999999999876432221 111 1111   4678999999999975432  34455555555654   8999


Q ss_pred             ecCCCCCCCHHHHHHHHHHHh
Q psy15351         81 NCRNPNCKGVQKILPTLQHIS  101 (352)
Q Consensus        81 Sa~~~~~~gi~~L~~~i~~~~  101 (352)
                      ||+++  .|++++++++.+.+
T Consensus       158 Sa~~~--~gi~~l~~~l~~~i  176 (179)
T 1z0f_A          158 SAKTG--ENVEDAFLEAAKKI  176 (179)
T ss_dssp             CTTTC--TTHHHHHHHHHHHH
T ss_pred             eCCCC--CCHHHHHHHHHHHH
Confidence            99999  99999999887654

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=98.51  E-value=2.2e-07  Score=77.70  Aligned_cols=90  Identities=14%  Similarity=0.106  Sum_probs=63.1

Q ss_pred             HHHhhccCEEEEEEcCCCCCCCcC-HHH-HHHHh---CCCCEEEEEEcccCCCccc--hHHHHHHHHhhcCCCCcEEEee
Q psy15351          9 EKHLKNVDIVIEVHDSRMPFTGRN-HLL-QQSVQ---NIRPMVLVLNKRDLINSKH--ESLIEEKVRKEQSHISEVIFTN   81 (352)
Q Consensus         9 ~~~i~~aD~vl~VvDar~p~~~~~-~~l-~~~l~---~~k~~ilVlNK~Dl~~~~~--~~~~~~~~~~~~~~~~~v~~iS   81 (352)
                      ...+..+|++++|+|+.++.+... ..+ ..+..   .+.|+++|+||+|+.+...  ..+..++.+..+..   ++.+|
T Consensus        79 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~---~~~~S  155 (181)
T 2efe_B           79 PMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDARKVTAEDAQTYAQENGLF---FMETS  155 (181)
T ss_dssp             HHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCE---EEECC
T ss_pred             HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccccCCHHHHHHHHHHcCCE---EEEEE
Confidence            456788999999999987543211 111 12222   3678999999999976433  34455555555654   99999


Q ss_pred             cCCCCCCCHHHHHHHHHHHhhh
Q psy15351         82 CRNPNCKGVQKILPTLQHISDN  103 (352)
Q Consensus        82 a~~~~~~gi~~L~~~i~~~~~~  103 (352)
                      |+++  .|+++++++|.+.+..
T Consensus       156 a~~g--~gi~~l~~~l~~~~~~  175 (181)
T 2efe_B          156 AKTA--TNVKEIFYEIARRLPR  175 (181)
T ss_dssp             SSSC--TTHHHHHHHHHHTCC-
T ss_pred             CCCC--CCHHHHHHHHHHHHHh
Confidence            9999  9999999999876654

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=98.51  E-value=9.4e-08  Score=81.34  Aligned_cols=62  Identities=27%  Similarity=0.351  Sum_probs=44.3

Q ss_pred             CcceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEec-CCCcEEEEeCCCCC
Q psy15351        166 VYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKIS-EKPLIYILDTPGIS  232 (352)
Q Consensus       166 ~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~-~~~~~~l~DtPGi~  232 (352)
                      .+.++|+++|.+|||||||+|+|.+..    ....+.+.+|+|..... +... ....+.++||||..
T Consensus        21 ~~~~ki~vvG~~~~GKSsli~~l~~~~----~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~Dt~G~~   83 (192)
T 2fg5_A           21 IRELKVCLLGDTGVGKSSIVCRFVQDH----FDHNISPTIGASFMTKT-VPCGNELHKFLIWDTAGQE   83 (192)
T ss_dssp             CEEEEEEEEECTTSSHHHHHHHHHHCC----CCTTCCCCSSEEEEEEE-EECSSSEEEEEEEEECCSG
T ss_pred             CCceEEEEECcCCCCHHHHHHHHhcCC----CCCCcCCCcceeEEEEE-EEeCCEEEEEEEEcCCCch
Confidence            356899999999999999999999731    22356677887765432 2222 22368999999954

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=98.50  E-value=2.9e-07  Score=77.88  Aligned_cols=91  Identities=19%  Similarity=0.162  Sum_probs=62.6

Q ss_pred             HhhccCEEEEEEcCCCCCCCc--CHHHHHHHh----CCCCEEEEEEcccCCCccchHHHHHHHHhhcCC--CCcEEEeec
Q psy15351         11 HLKNVDIVIEVHDSRMPFTGR--NHLLQQSVQ----NIRPMVLVLNKRDLINSKHESLIEEKVRKEQSH--ISEVIFTNC   82 (352)
Q Consensus        11 ~i~~aD~vl~VvDar~p~~~~--~~~l~~~l~----~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~--~~~v~~iSa   82 (352)
                      .+..+|++++|+|++++.+..  ...+.+++.    .+.|+++|+||+|+.+.....++.+.+......  ..+++.+||
T Consensus        86 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  165 (189)
T 2x77_A           86 YFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAASEAEIAEQLGVSSIMNRTWTIVKSSS  165 (189)
T ss_dssp             SSTTCCEEEEEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCT
T ss_pred             HhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCCCHHHHHHHhChhhccCCceEEEEccC
Confidence            467899999999998774322  123334433    368999999999998765444444433211111  014889999


Q ss_pred             CCCCCCCHHHHHHHHHHHhhh
Q psy15351         83 RNPNCKGVQKILPTLQHISDN  103 (352)
Q Consensus        83 ~~~~~~gi~~L~~~i~~~~~~  103 (352)
                      +++  .|++++++++.+.+.+
T Consensus       166 ~~~--~gi~~l~~~l~~~i~~  184 (189)
T 2x77_A          166 KTG--DGLVEGMDWLVERLRE  184 (189)
T ss_dssp             TTC--TTHHHHHHHHHHHHHH
T ss_pred             CCc--cCHHHHHHHHHHHHHh
Confidence            999  9999999999887754

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=98.49  E-value=1.2e-07  Score=78.31  Aligned_cols=60  Identities=30%  Similarity=0.346  Sum_probs=39.9

Q ss_pred             ceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecC-CCcEEEEeCCCCC
Q psy15351        168 NTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISE-KPLIYILDTPGIS  232 (352)
Q Consensus       168 ~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~-~~~~~l~DtPGi~  232 (352)
                      .++|+++|.+|||||||+|++.+..    ......+..|.+.... .+.... ...+.++||||..
T Consensus         3 ~~~i~v~G~~~~GKssli~~l~~~~----~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~D~~G~~   63 (170)
T 1ek0_A            3 SIKLVLLGEAAVGKSSIVLRFVSND----FAENKEPTIGAAFLTQ-RVTINEHTVKFEIWDTAGQE   63 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSC----CCTTCCCCSSEEEEEE-EEEETTEEEEEEEEEECCSG
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcCC----CCCCCCCccceeEEEE-EEEECCEEEEEEEEECCCCh
Confidence            4789999999999999999999632    1223345555554432 222222 1268899999954

>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A

Probab=98.48  E-value=1.3e-07  Score=88.83  Aligned_cols=40  Identities=20%  Similarity=0.176  Sum_probs=28.4

Q ss_pred             cceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCC
Q psy15351        167 YNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAG  206 (352)
Q Consensus       167 ~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg  206 (352)
                      ..++|+++|.||||||||+|+|.+..+.......++..|+
T Consensus        30 ~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~   69 (353)
T 2x2e_A           30 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPL   69 (353)
T ss_dssp             CCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCE
T ss_pred             CCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccce
Confidence            3478999999999999999999984332222224455565

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=98.48  E-value=3.7e-07  Score=77.58  Aligned_cols=90  Identities=16%  Similarity=0.070  Sum_probs=63.1

Q ss_pred             HHHHhhccCEEEEEEcCCCCCCCcC--HHHHHHHh-CCCCEEEEEEcccCCCcc-chHHHHHHHHhhcCCCCcEEEeecC
Q psy15351          8 IEKHLKNVDIVIEVHDSRMPFTGRN--HLLQQSVQ-NIRPMVLVLNKRDLINSK-HESLIEEKVRKEQSHISEVIFTNCR   83 (352)
Q Consensus         8 ~~~~i~~aD~vl~VvDar~p~~~~~--~~l~~~l~-~~k~~ilVlNK~Dl~~~~-~~~~~~~~~~~~~~~~~~v~~iSa~   83 (352)
                      ....+..+|++|+|+|+.++.+...  ..+..+.. .+.|+++|+||+|+.... ..++..+++++.+..   ++.+||+
T Consensus       110 ~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~---~~~~Sa~  186 (208)
T 3clv_A          110 VPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSNYIIILVANKIDKNKFQVDILEVQKYAQDNNLL---FIQTSAK  186 (208)
T ss_dssp             HHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCCEEEEEEECTTCC-CCSCHHHHHHHHHHTTCE---EEEECTT
T ss_pred             HHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCcccccCCHHHHHHHHHHcCCc---EEEEecC
Confidence            4566789999999999987643221  11222222 468999999999932222 245566666666664   9999999


Q ss_pred             CCCCCCHHHHHHHHHHHhh
Q psy15351         84 NPNCKGVQKILPTLQHISD  102 (352)
Q Consensus        84 ~~~~~gi~~L~~~i~~~~~  102 (352)
                      ++  .|+++++++|.+.+.
T Consensus       187 ~~--~~i~~l~~~l~~~~~  203 (208)
T 3clv_A          187 TG--TNIKNIFYMLAEEIY  203 (208)
T ss_dssp             TC--TTHHHHHHHHHHHHH
T ss_pred             CC--CCHHHHHHHHHHHHH
Confidence            99  999999999877654

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=98.48  E-value=3.4e-07  Score=75.17  Aligned_cols=90  Identities=14%  Similarity=0.123  Sum_probs=63.1

Q ss_pred             HHHHhhccCEEEEEEcCCCCCCCcC--HHHHHHHh----CCCCEEEEEEcccCCCccc--hHHHHHHHHhhcCCCCcEEE
Q psy15351          8 IEKHLKNVDIVIEVHDSRMPFTGRN--HLLQQSVQ----NIRPMVLVLNKRDLINSKH--ESLIEEKVRKEQSHISEVIF   79 (352)
Q Consensus         8 ~~~~i~~aD~vl~VvDar~p~~~~~--~~l~~~l~----~~k~~ilVlNK~Dl~~~~~--~~~~~~~~~~~~~~~~~v~~   79 (352)
                      ....+..+|++++|+|+.++.+...  ..+..+..    .+.|+++|+||+|+.+...  ..+..++.+..+.+   ++.
T Consensus        69 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~---~~~  145 (168)
T 1u8z_A           69 RDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVN---YVE  145 (168)
T ss_dssp             HHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCE---EEE
T ss_pred             HHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccCccCHHHHHHHHHHcCCe---EEE
Confidence            3456789999999999987532211  11112221    3789999999999976432  34455555555654   899


Q ss_pred             eecCCCCCCCHHHHHHHHHHHhh
Q psy15351         80 TNCRNPNCKGVQKILPTLQHISD  102 (352)
Q Consensus        80 iSa~~~~~~gi~~L~~~i~~~~~  102 (352)
                      +||+++  .|++++++++.+.+.
T Consensus       146 ~Sa~~~--~gi~~l~~~l~~~i~  166 (168)
T 1u8z_A          146 TSAKTR--ANVDKVFFDLMREIR  166 (168)
T ss_dssp             CCTTTC--TTHHHHHHHHHHHHH
T ss_pred             eCCCCC--CCHHHHHHHHHHHHH
Confidence            999999  999999999876553

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=98.48  E-value=4.6e-07  Score=74.71  Aligned_cols=90  Identities=19%  Similarity=0.123  Sum_probs=62.7

Q ss_pred             HHHhhccCEEEEEEcCCCCCCCcC--HHHHHHHh---CCCCEEEEEEcccCCCccc-hHHHHHHHHhhcCCCCcEEEeec
Q psy15351          9 EKHLKNVDIVIEVHDSRMPFTGRN--HLLQQSVQ---NIRPMVLVLNKRDLINSKH-ESLIEEKVRKEQSHISEVIFTNC   82 (352)
Q Consensus         9 ~~~i~~aD~vl~VvDar~p~~~~~--~~l~~~l~---~~k~~ilVlNK~Dl~~~~~-~~~~~~~~~~~~~~~~~v~~iSa   82 (352)
                      ...+..+|++++|+|+.++.+...  ..+..+..   .+.|+++|+||+|+.+... .+...++.++.+.+   ++.+||
T Consensus        70 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~---~~~~Sa  146 (170)
T 1g16_A           70 TAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEALAKELGIP---FIESSA  146 (170)
T ss_dssp             HHHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTCCSCHHHHHHHHHHHTCC---EEECBT
T ss_pred             HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCCcCccCHHHHHHHHHHcCCe---EEEEEC
Confidence            456789999999999987643221  11112221   3689999999999954332 23334444455665   999999


Q ss_pred             CCCCCCCHHHHHHHHHHHhhh
Q psy15351         83 RNPNCKGVQKILPTLQHISDN  103 (352)
Q Consensus        83 ~~~~~~gi~~L~~~i~~~~~~  103 (352)
                      +++  .|+++++++|.+.+.+
T Consensus       147 ~~~--~gv~~l~~~l~~~~~~  165 (170)
T 1g16_A          147 KND--DNVNEIFFTLAKLIQE  165 (170)
T ss_dssp             TTT--BSHHHHHHHHHHHHHH
T ss_pred             CCC--CCHHHHHHHHHHHHHH
Confidence            999  9999999999877654

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=98.48  E-value=1.2e-07  Score=78.15  Aligned_cols=62  Identities=19%  Similarity=0.197  Sum_probs=41.2

Q ss_pred             cceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecC-CCcEEEEeCCCCCC
Q psy15351        167 YNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISE-KPLIYILDTPGISL  233 (352)
Q Consensus       167 ~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~-~~~~~l~DtPGi~~  233 (352)
                      ..++|+++|.+|||||||+|+|.+..    ......+..|++..... +.... ...+.++||||...
T Consensus         5 ~~~~i~v~G~~~~GKssli~~l~~~~----~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~D~~G~~~   67 (170)
T 1r2q_A            5 CQFKLVLLGESAVGKSSLVLRFVKGQ----FHEFQESTIGAAFLTQT-VCLDDTTVKFEIWDTAGQER   67 (170)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSC----CCTTCCCCSSEEEEEEE-EEETTEEEEEEEEEECCSGG
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHcCC----CCCCCCCccceEEEEEE-EEECCEEEEEEEEeCCCcHH
Confidence            46899999999999999999999631    12223445565554332 22222 23688999999643

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=98.47  E-value=2.1e-07  Score=78.32  Aligned_cols=61  Identities=25%  Similarity=0.254  Sum_probs=39.0

Q ss_pred             cceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCC--cEEEEeCCCCCCC
Q psy15351        167 YNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKP--LIYILDTPGISLP  234 (352)
Q Consensus       167 ~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~--~~~l~DtPGi~~~  234 (352)
                      ..++|+++|.+|||||||+|+|.+.     .  .....++++...........+.  .+.++||||....
T Consensus         3 ~~~ki~v~G~~~~GKSsli~~l~~~-----~--~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~   65 (189)
T 4dsu_A            3 TEYKLVVVGADGVGKSALTIQLIQN-----H--FVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY   65 (189)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHHS-----S--CCCCCCTTCCEEEEEEEEETTEEEEEEEEECCCC---
T ss_pred             cEEEEEEECCCCCCHHHHHHHHHhC-----C--CCCCCCCCchheEEEEEEECCcEEEEEEEECCCcHHH
Confidence            4689999999999999999999963     2  2334445544433322222333  3678999996643

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=98.47  E-value=7.9e-08  Score=80.54  Aligned_cols=89  Identities=15%  Similarity=0.125  Sum_probs=61.5

Q ss_pred             HHHHHHHhhccCEEEEEEcCCCCCCCcCHHHHHHHh----CCCCEEEEEEcccCCCccchHHHHHHHHhhcCCCCcEEEe
Q psy15351          5 LKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQ----NIRPMVLVLNKRDLINSKHESLIEEKVRKEQSHISEVIFT   80 (352)
Q Consensus         5 ~~~~~~~i~~aD~vl~VvDar~p~~~~~~~l~~~l~----~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~v~~i   80 (352)
                      +.+++..+..+|++++|+|++++.+.....+...+.    .+.|+++|+||+|+.+...  .+   ....+.   +++.+
T Consensus        74 ~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~--~~---~~~~~~---~~~~~  145 (172)
T 2gj8_A           74 IERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETL--GM---SEVNGH---ALIRL  145 (172)
T ss_dssp             HHHHHHHHHTCSEEEEEEETTTCCCCSHHHHCHHHHHHSCTTCCEEEEEECHHHHCCCC--EE---EEETTE---EEEEC
T ss_pred             HHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHhcccCCCEEEEEECccCCcchh--hh---hhccCC---ceEEE
Confidence            445667789999999999999876654333322222    3689999999999864321  00   001122   48899


Q ss_pred             ecCCCCCCCHHHHHHHHHHHhhh
Q psy15351         81 NCRNPNCKGVQKILPTLQHISDN  103 (352)
Q Consensus        81 Sa~~~~~~gi~~L~~~i~~~~~~  103 (352)
                      ||+++  .|+++++++|.+.+..
T Consensus       146 SA~~g--~gv~~l~~~l~~~~~~  166 (172)
T 2gj8_A          146 SARTG--EGVDVLRNHLKQSMGF  166 (172)
T ss_dssp             CTTTC--TTHHHHHHHHHHHC--
T ss_pred             eCCCC--CCHHHHHHHHHHHhhh
Confidence            99999  9999999999876653

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=98.47  E-value=1.1e-07  Score=82.02  Aligned_cols=62  Identities=23%  Similarity=0.310  Sum_probs=37.0

Q ss_pred             CcceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCCcEEEEeCCCCCCC
Q psy15351        166 VYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLP  234 (352)
Q Consensus       166 ~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~~~  234 (352)
                      ..+.+|+++|.+|||||||+|+|.+.    .....+++.+|+|+... .+...+  .+.++||||+...
T Consensus        24 ~~~~~v~lvG~~g~GKSTLl~~l~g~----~~~~~~~~~~G~~~~~~-~~~~~~--~~~l~Dt~G~~~~   85 (210)
T 1pui_A           24 DTGIEVAFAGRSNAGKSSALNTLTNQ----KSLARTSKTPGRTQLIN-LFEVAD--GKRLVDLPGYGYA   85 (210)
T ss_dssp             SCSEEEEEEECTTSSHHHHHTTTCCC-----------------CCEE-EEEEET--TEEEEECCCCC--
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhCC----CccccccCCCccceeeE-EEEecC--CEEEEECcCCccc
Confidence            45689999999999999999999873    11456678899887643 232222  6889999998753

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=98.47  E-value=3.9e-07  Score=77.62  Aligned_cols=92  Identities=22%  Similarity=0.127  Sum_probs=62.1

Q ss_pred             HHHhhccCEEEEEEcCCCCCCCc--CHHHHHHHh----CCCCEEEEEEcccCCCccchHHHHHHHHhhcCC--CCcEEEe
Q psy15351          9 EKHLKNVDIVIEVHDSRMPFTGR--NHLLQQSVQ----NIRPMVLVLNKRDLINSKHESLIEEKVRKEQSH--ISEVIFT   80 (352)
Q Consensus         9 ~~~i~~aD~vl~VvDar~p~~~~--~~~l~~~l~----~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~--~~~v~~i   80 (352)
                      ...+..+|++++|+|+.++.+..  ...+..++.    .+.|+++|+||+|+.+.....++.+.+......  ..+++.+
T Consensus        91 ~~~~~~~d~iilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~  170 (192)
T 2b6h_A           91 RHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAMPVSELTDKLGLQHLRSRTWYVQAT  170 (192)
T ss_dssp             HHHHHTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEEC
T ss_pred             HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEEC
Confidence            35678999999999998763221  122333332    368999999999998764444554443221111  1148899


Q ss_pred             ecCCCCCCCHHHHHHHHHHHhh
Q psy15351         81 NCRNPNCKGVQKILPTLQHISD  102 (352)
Q Consensus        81 Sa~~~~~~gi~~L~~~i~~~~~  102 (352)
                      ||+++  .|+++++++|.+.+.
T Consensus       171 SA~~g--~gi~~l~~~l~~~i~  190 (192)
T 2b6h_A          171 CATQG--TGLYDGLDWLSHELS  190 (192)
T ss_dssp             BTTTT--BTHHHHHHHHHHHTT
T ss_pred             cCCCc--CCHHHHHHHHHHHHh
Confidence            99999  999999999876553

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=98.47  E-value=1.7e-07  Score=79.62  Aligned_cols=64  Identities=20%  Similarity=0.296  Sum_probs=40.9

Q ss_pred             CcceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEec-CCCcEEEEeCCCCCCC
Q psy15351        166 VYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKIS-EKPLIYILDTPGISLP  234 (352)
Q Consensus       166 ~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~-~~~~~~l~DtPGi~~~  234 (352)
                      ...++|+++|.+|||||||+|+|.+...    .....+..|.+.... .+... ....+.++||||....
T Consensus        23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~----~~~~~~t~~~~~~~~-~~~~~~~~~~~~i~Dt~G~~~~   87 (193)
T 2oil_A           23 NFVFKVVLIGESGVGKTNLLSRFTRNEF----SHDSRTTIGVEFSTR-TVMLGTAAVKAQIWDTAGLERY   87 (193)
T ss_dssp             SEEEEEEEESSTTSSHHHHHHHHHHSCC----CSSCCCCSSEEEEEE-EEEETTEEEEEEEEEESCCCTT
T ss_pred             CcceEEEEECcCCCCHHHHHHHHhcCCC----CCCCCCccceeEEEE-EEEECCEEEEEEEEeCCCchhh
Confidence            4569999999999999999999997321    112223344443322 12221 1225789999998653

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}

Probab=98.47  E-value=3.2e-07  Score=79.53  Aligned_cols=91  Identities=18%  Similarity=0.134  Sum_probs=60.3

Q ss_pred             HHhhccCEEEEEEcCCCCCCCcCH-HHHHHHh----CCCCEEEEEEcccCCCccc-hHH-HHHHHHhhcCCCCcEEEeec
Q psy15351         10 KHLKNVDIVIEVHDSRMPFTGRNH-LLQQSVQ----NIRPMVLVLNKRDLINSKH-ESL-IEEKVRKEQSHISEVIFTNC   82 (352)
Q Consensus        10 ~~i~~aD~vl~VvDar~p~~~~~~-~l~~~l~----~~k~~ilVlNK~Dl~~~~~-~~~-~~~~~~~~~~~~~~v~~iSa   82 (352)
                      ..+..+|++|+|+|+.++.+..+. .+...+.    .+.|+++|+||+|+.+... ... ..++....+.   +++.+||
T Consensus        80 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~---~~~~~Sa  156 (218)
T 4djt_A           80 VYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKNRQKISKKLVMEVLKGKNY---EYFEISA  156 (218)
T ss_dssp             HHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC----CCHHHHHHHTTTCCC---EEEEEBT
T ss_pred             HHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCC---cEEEEec
Confidence            456789999999999876433221 1111111    3689999999999986532 222 2233333344   4999999


Q ss_pred             CCCCCCCHHHHHHHHHHHhhhcc
Q psy15351         83 RNPNCKGVQKILPTLQHISDNMT  105 (352)
Q Consensus        83 ~~~~~~gi~~L~~~i~~~~~~~~  105 (352)
                      +++  .|+++++++|.+.+....
T Consensus       157 ~~g--~gv~~l~~~l~~~~~~~~  177 (218)
T 4djt_A          157 KTA--HNFGLPFLHLARIFTGRP  177 (218)
T ss_dssp             TTT--BTTTHHHHHHHHHHHCCT
T ss_pred             CCC--CCHHHHHHHHHHHHhccc
Confidence            999  999999999988776543

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=98.46  E-value=3.1e-07  Score=77.78  Aligned_cols=93  Identities=18%  Similarity=0.170  Sum_probs=62.8

Q ss_pred             HHHHhhccCEEEEEEcCCCCCCCcC--HHHHHHHh----CCCCEEEEEEcccCCCccchHHHHHHHHhhcC--CCCcEEE
Q psy15351          8 IEKHLKNVDIVIEVHDSRMPFTGRN--HLLQQSVQ----NIRPMVLVLNKRDLINSKHESLIEEKVRKEQS--HISEVIF   79 (352)
Q Consensus         8 ~~~~i~~aD~vl~VvDar~p~~~~~--~~l~~~l~----~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~--~~~~v~~   79 (352)
                      ....+..+|++++|+|+.++.+...  ..+..++.    .+.|+++|+||+|+.+.....++.+.+.....  ...+++.
T Consensus        84 ~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (188)
T 1zd9_A           84 WERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICCYS  163 (188)
T ss_dssp             HHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEE
T ss_pred             HHHHHccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccCCCHHHHHHHhChhhhccCCeeEEE
Confidence            3456789999999999987532211  22333332    46899999999999876444444444322111  1114789


Q ss_pred             eecCCCCCCCHHHHHHHHHHHhh
Q psy15351         80 TNCRNPNCKGVQKILPTLQHISD  102 (352)
Q Consensus        80 iSa~~~~~~gi~~L~~~i~~~~~  102 (352)
                      +||+++  .|+++++++|.+.+.
T Consensus       164 ~SA~~g--~gv~~l~~~l~~~~~  184 (188)
T 1zd9_A          164 ISCKEK--DNIDITLQWLIQHSK  184 (188)
T ss_dssp             CCTTTC--TTHHHHHHHHHHTCC
T ss_pred             EECCCC--CCHHHHHHHHHHHHH
Confidence            999999  999999999987654

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=98.46  E-value=3e-07  Score=76.56  Aligned_cols=89  Identities=15%  Similarity=0.137  Sum_probs=62.6

Q ss_pred             HHHhhccCEEEEEEcCCCCCCCcC--HHHHHHHh---CCCCEEEEEEcccCCCccc--hHHHHHHHHhhcCCCCcEEEee
Q psy15351          9 EKHLKNVDIVIEVHDSRMPFTGRN--HLLQQSVQ---NIRPMVLVLNKRDLINSKH--ESLIEEKVRKEQSHISEVIFTN   81 (352)
Q Consensus         9 ~~~i~~aD~vl~VvDar~p~~~~~--~~l~~~l~---~~k~~ilVlNK~Dl~~~~~--~~~~~~~~~~~~~~~~~v~~iS   81 (352)
                      ...+..+|++++|+|+.++.+...  ..+..+..   .+.|+++|+||+|+.++..  ..+..++....+..   ++.+|
T Consensus        81 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~---~~~~S  157 (179)
T 2y8e_A           81 PSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVM---FIETS  157 (179)
T ss_dssp             HHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGGGGCCSCHHHHHHHHHHHTCE---EEEEB
T ss_pred             HHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccCcCCHHHHHHHHHHcCCe---EEEEe
Confidence            456789999999999987533211  11222221   3688999999999976433  34444555555654   89999


Q ss_pred             cCCCCCCCHHHHHHHHHHHhh
Q psy15351         82 CRNPNCKGVQKILPTLQHISD  102 (352)
Q Consensus        82 a~~~~~~gi~~L~~~i~~~~~  102 (352)
                      |+++  .|+++++++|.+.+.
T Consensus       158 a~~~--~~i~~l~~~l~~~~~  176 (179)
T 2y8e_A          158 AKAG--YNVKQLFRRVAAALP  176 (179)
T ss_dssp             TTTT--BSHHHHHHHHHHTCC
T ss_pred             CCCC--CCHHHHHHHHHHHHh
Confidence            9999  999999999887654

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=98.46  E-value=1.6e-07  Score=78.98  Aligned_cols=89  Identities=15%  Similarity=0.063  Sum_probs=60.1

Q ss_pred             HHHhhccCEEEEEEcCCCCCCCcC--HHHHHHHh----CCCCEEEEEEcccCCCccchHHHHHHHHhhcCC--CCcEEEe
Q psy15351          9 EKHLKNVDIVIEVHDSRMPFTGRN--HLLQQSVQ----NIRPMVLVLNKRDLINSKHESLIEEKVRKEQSH--ISEVIFT   80 (352)
Q Consensus         9 ~~~i~~aD~vl~VvDar~p~~~~~--~~l~~~l~----~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~--~~~v~~i   80 (352)
                      ...+..+|++++|+|++++.+...  ..+..++.    .+.|+++|+||+|+.+.....++.+.+......  ..+++.+
T Consensus        83 ~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~  162 (181)
T 2h17_A           83 NTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQAC  162 (181)
T ss_dssp             GGGGTTCCEEEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEEC
T ss_pred             HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccCCCHHHHHHHhCcccccCCceEEEEc
Confidence            346789999999999998643221  22333332    468999999999998754444444443211111  0148899


Q ss_pred             ecCCCCCCCHHHHHHHHHH
Q psy15351         81 NCRNPNCKGVQKILPTLQH   99 (352)
Q Consensus        81 Sa~~~~~~gi~~L~~~i~~   99 (352)
                      ||+++  .|+++++++|.+
T Consensus       163 Sa~~g--~gi~~l~~~l~~  179 (181)
T 2h17_A          163 CALTG--EGLCQGLEWMMS  179 (181)
T ss_dssp             BTTTT--BTHHHHHHHHHT
T ss_pred             cCCCC--cCHHHHHHHHHh
Confidence            99999  999999998864

>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*

Probab=98.46  E-value=1e-06  Score=88.21  Aligned_cols=131  Identities=15%  Similarity=0.082  Sum_probs=82.6

Q ss_pred             hHHHHHHHHhhccCEEEEEEcCCCCCCCcCHHHH-HHHhCCCCEEEEEEcccCCCccchHHHHHHHHh-hcCCCCcEEEe
Q psy15351          3 RGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQ-QSVQNIRPMVLVLNKRDLINSKHESLIEEKVRK-EQSHISEVIFT   80 (352)
Q Consensus         3 ~~~~~~~~~i~~aD~vl~VvDar~p~~~~~~~l~-~~l~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~-~~~~~~~v~~i   80 (352)
                      +....+...+..+|.+|+|+|+.++......... .....+.|+++|+||+|+.+... ....+.+.+ .+....+++++
T Consensus        83 dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~~~ipiIvViNKiDl~~a~~-~~v~~ei~~~lg~~~~~vi~v  161 (599)
T 3cb4_D           83 DFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAMEMDLEVVPVLNKIDLPAADP-ERVAEEIEDIVGIDATDAVRC  161 (599)
T ss_dssp             GGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHHTTCEEEEEEECTTSTTCCH-HHHHHHHHHHTCCCCTTCEEE
T ss_pred             HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEeeeccCcccccH-HHHHHHHHHHhCCCcceEEEe
Confidence            3445677889999999999999987665443322 22226889999999999986542 222222322 24433358999


Q ss_pred             ecCCCCCCCHHHHHHHHHHHhhhccccccccccce-eEEEeccCCCCchhHHHHHhhh
Q psy15351         81 NCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNT-TVMVVGVPNVGKSSIINALRSS  137 (352)
Q Consensus        81 Sa~~~~~~gi~~L~~~i~~~~~~~~~~~~~~~~~~-~~~~~g~~nvgksslin~l~~~  137 (352)
                      ||+++  .|+++|++++.+.++..... ....+.. ..-..-.+++|+.++++-+.+.
T Consensus       162 SAktg--~GI~~Ll~~I~~~lp~p~~~-~~~p~~alI~d~~~d~~~G~v~~~rV~sG~  216 (599)
T 3cb4_D          162 SAKTG--VGVQDVLERLVRDIPPPEGD-PEGPLQALIIDSWFDNYLGVVSLIRIKNGT  216 (599)
T ss_dssp             CTTTC--TTHHHHHHHHHHHSCCCCCC-TTSCCEEEEEEEEEETTTEEEEEEEEEESC
T ss_pred             ecccC--CCchhHHHHHhhcCCCcccc-ccCCceeeeeeccccccccEEEEEEEEeCE
Confidence            99999  99999999999887753211 1111111 1112223667777666555443

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=98.46  E-value=7.2e-07  Score=75.60  Aligned_cols=91  Identities=19%  Similarity=0.092  Sum_probs=63.6

Q ss_pred             HHHHhhccCEEEEEEcCCCCCCCcC-HHHHHHHh----CCCCEEEEEEcccCCCccch--HHHHHHHHhhcCCCCcEEEe
Q psy15351          8 IEKHLKNVDIVIEVHDSRMPFTGRN-HLLQQSVQ----NIRPMVLVLNKRDLINSKHE--SLIEEKVRKEQSHISEVIFT   80 (352)
Q Consensus         8 ~~~~i~~aD~vl~VvDar~p~~~~~-~~l~~~l~----~~k~~ilVlNK~Dl~~~~~~--~~~~~~~~~~~~~~~~v~~i   80 (352)
                      ....+..+|++++|+|+.++.+... ..+...+.    .+.|+++|+||+|+.+....  ....++....+.+   ++.+
T Consensus        82 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~---~~~~  158 (196)
T 3tkl_A           82 TSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIP---FLET  158 (196)
T ss_dssp             HHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCC---EEEE
T ss_pred             HHHHHhhCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCc---EEEE
Confidence            4456789999999999987533211 11111121    36899999999999866432  3333444445665   9999


Q ss_pred             ecCCCCCCCHHHHHHHHHHHhhh
Q psy15351         81 NCRNPNCKGVQKILPTLQHISDN  103 (352)
Q Consensus        81 Sa~~~~~~gi~~L~~~i~~~~~~  103 (352)
                      ||+++  .|+++++++|.+.+..
T Consensus       159 Sa~~g--~gv~~l~~~l~~~i~~  179 (196)
T 3tkl_A          159 SAKNA--TNVEQSFMTMAAEIKK  179 (196)
T ss_dssp             CTTTC--TTHHHHHHHHHHHHHH
T ss_pred             eCCCC--CCHHHHHHHHHHHHHH
Confidence            99999  9999999998876654

>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*

Probab=98.45  E-value=5.9e-07  Score=86.06  Aligned_cols=98  Identities=11%  Similarity=0.141  Sum_probs=66.9

Q ss_pred             HHHHHHHHhhccCEEEEEEcCCCCC-CCcCHHHHHHHh--CCCCEEEEEEcccCCCccc----hHHHHHHHHhhcCCCCc
Q psy15351          4 GLKDIEKHLKNVDIVIEVHDSRMPF-TGRNHLLQQSVQ--NIRPMVLVLNKRDLINSKH----ESLIEEKVRKEQSHISE   76 (352)
Q Consensus         4 ~~~~~~~~i~~aD~vl~VvDar~p~-~~~~~~l~~~l~--~~k~~ilVlNK~Dl~~~~~----~~~~~~~~~~~~~~~~~   76 (352)
                      ..+.+...+..+|++|+|+|++++. .....+...++.  ..+|+++|+||+|+.+.+.    .+++.+++........+
T Consensus        96 f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~~~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~  175 (410)
T 1kk1_A           96 LMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQIIGQKNIIIAQNKIELVDKEKALENYRQIKEFIEGTVAENAP  175 (410)
T ss_dssp             HHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSCHHHHHHHHHHHHHHHTTSTTTTCC
T ss_pred             HHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEECccCCCHHHHHHHHHHHHHHHHhcCcCCCe
Confidence            4556777888999999999999764 222222222222  4568999999999987653    23334444321111225


Q ss_pred             EEEeecCCCCCCCHHHHHHHHHHHhhh
Q psy15351         77 VIFTNCRNPNCKGVQKILPTLQHISDN  103 (352)
Q Consensus        77 v~~iSa~~~~~~gi~~L~~~i~~~~~~  103 (352)
                      ++++||+++  .|+++|+++|.+.++.
T Consensus       176 ~i~vSA~~g--~gi~~L~~~l~~~~~~  200 (410)
T 1kk1_A          176 IIPISALHG--ANIDVLVKAIEDFIPT  200 (410)
T ss_dssp             EEECBTTTT--BSHHHHHHHHHHHSCC
T ss_pred             EEEeeCCCC--CCHHHHHHHHHHhCCC
Confidence            999999999  9999999999987664

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=98.45  E-value=2.2e-07  Score=78.62  Aligned_cols=63  Identities=21%  Similarity=0.268  Sum_probs=41.6

Q ss_pred             CcceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecC-CCcEEEEeCCCCCC
Q psy15351        166 VYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISE-KPLIYILDTPGISL  233 (352)
Q Consensus       166 ~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~-~~~~~l~DtPGi~~  233 (352)
                      ...++|+++|.+|||||||+|+|.+..    ......+..|++..... +.... ...+.++||||...
T Consensus        20 ~~~~ki~vvG~~~~GKSsli~~l~~~~----~~~~~~~t~~~~~~~~~-~~~~~~~~~~~l~Dt~G~~~   83 (189)
T 2gf9_A           20 DYMFKLLLIGNSSVGKTSFLFRYADDS----FTPAFVSTVGIDFKVKT-VYRHDKRIKLQIWDTAGQER   83 (189)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHSC----CCCSCCCCCCCEEEEEE-EEETTEEEEEEEEECCSCCS
T ss_pred             CceeEEEEECCCCCCHHHHHHHHHcCC----CCCCcCCceeEEEEEEE-EEECCeEEEEEEEeCCCcHH
Confidence            456899999999999999999999632    11223444555544322 22221 22688999999654

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=98.45  E-value=6.1e-07  Score=74.80  Aligned_cols=87  Identities=15%  Similarity=0.028  Sum_probs=62.2

Q ss_pred             HHhhccCEEEEEEcCCCCCCCcCHHHHHHH----h--CCCCEEEEEEcccCCCccc--hHHHHHHHHhhcCCCCcEEEee
Q psy15351         10 KHLKNVDIVIEVHDSRMPFTGRNHLLQQSV----Q--NIRPMVLVLNKRDLINSKH--ESLIEEKVRKEQSHISEVIFTN   81 (352)
Q Consensus        10 ~~i~~aD~vl~VvDar~p~~~~~~~l~~~l----~--~~k~~ilVlNK~Dl~~~~~--~~~~~~~~~~~~~~~~~v~~iS   81 (352)
                      ..+..+|++++|+|+.++.+..  .+..++    .  ...|+++|+||+|+.+...  .....++....+.+   ++.+|
T Consensus        77 ~~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~---~~~~S  151 (181)
T 3tw8_B           77 TYYRGTHGVIVVYDVTSAESFV--NVKRWLHEINQNCDDVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQ---LFETS  151 (181)
T ss_dssp             GGGTTCSEEEEEEETTCHHHHH--HHHHHHHHHHHHCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCC---EEECB
T ss_pred             HHhccCCEEEEEEECCCHHHHH--HHHHHHHHHHHhCCCCCEEEEEECCCCchhcccCHHHHHHHHHHcCCe---EEEEE
Confidence            3578899999999998753221  222222    1  4689999999999876543  23344444455665   99999


Q ss_pred             cCCCCCCCHHHHHHHHHHHhhh
Q psy15351         82 CRNPNCKGVQKILPTLQHISDN  103 (352)
Q Consensus        82 a~~~~~~gi~~L~~~i~~~~~~  103 (352)
                      |+++  .|+++++++|.+.+..
T Consensus       152 a~~~--~gi~~l~~~l~~~~~~  171 (181)
T 3tw8_B          152 AKEN--VNVEEMFNCITELVLR  171 (181)
T ss_dssp             TTTT--BSHHHHHHHHHHHHHH
T ss_pred             CCCC--CCHHHHHHHHHHHHHH
Confidence            9999  9999999999876654

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=98.45  E-value=3.3e-07  Score=77.93  Aligned_cols=90  Identities=12%  Similarity=0.054  Sum_probs=63.1

Q ss_pred             HHHhhccCEEEEEEcCCCCCCCcC-HHHHHHHh----CCCCEEEEEEcccCCCccc--hHHHHHHHHhhcCCCCcEEEee
Q psy15351          9 EKHLKNVDIVIEVHDSRMPFTGRN-HLLQQSVQ----NIRPMVLVLNKRDLINSKH--ESLIEEKVRKEQSHISEVIFTN   81 (352)
Q Consensus         9 ~~~i~~aD~vl~VvDar~p~~~~~-~~l~~~l~----~~k~~ilVlNK~Dl~~~~~--~~~~~~~~~~~~~~~~~v~~iS   81 (352)
                      ...+..+|++++|+|+.++.+... ..+...+.    .+.|+++|+||+|+.+...  .++..++.++.+..   ++.+|
T Consensus        90 ~~~~~~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~---~~~~S  166 (192)
T 2fg5_A           90 PMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDIREVPLKDAKEYAESIGAI---VVETS  166 (192)
T ss_dssp             HHHHTTCSEEEEEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTTTCE---EEECB
T ss_pred             HHhhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCE---EEEEe
Confidence            456789999999999987642211 11111121    3689999999999975332  34555555555654   89999


Q ss_pred             cCCCCCCCHHHHHHHHHHHhhh
Q psy15351         82 CRNPNCKGVQKILPTLQHISDN  103 (352)
Q Consensus        82 a~~~~~~gi~~L~~~i~~~~~~  103 (352)
                      |+++  .|+++++++|.+.+.+
T Consensus       167 a~~~--~gi~~l~~~l~~~i~~  186 (192)
T 2fg5_A          167 AKNA--INIEELFQGISRQIPP  186 (192)
T ss_dssp             TTTT--BSHHHHHHHHHHTCC-
T ss_pred             CCCC--cCHHHHHHHHHHHHHh
Confidence            9999  9999999999876654

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=98.44  E-value=4.7e-07  Score=75.42  Aligned_cols=91  Identities=13%  Similarity=0.138  Sum_probs=61.9

Q ss_pred             HhhccCEEEEEEcCCCCCCCcCHHHHHHHh-CCCCEEEEEEcccCCCccchHHHHHHHHhhcC---CC---CcEEEeecC
Q psy15351         11 HLKNVDIVIEVHDSRMPFTGRNHLLQQSVQ-NIRPMVLVLNKRDLINSKHESLIEEKVRKEQS---HI---SEVIFTNCR   83 (352)
Q Consensus        11 ~i~~aD~vl~VvDar~p~~~~~~~l~~~l~-~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~---~~---~~v~~iSa~   83 (352)
                      .+..+|++++|+|++++...........+. .+.|+++|+||+|+.+.. ..+..+.+.+...   ..   .+++.+||+
T Consensus        75 ~~~~~d~~i~v~d~~~~~~~~~~~~l~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  153 (178)
T 2lkc_A           75 GAQVTDIVILVVAADDGVMPQTVEAINHAKAANVPIIVAINKMDKPEAN-PDRVMQELMEYNLVPEEWGGDTIFCKLSAK  153 (178)
T ss_dssp             SCCCCCEEEEEEETTCCCCHHHHHHHHHHGGGSCCEEEEEETTTSSCSC-HHHHHHHHTTTTCCBTTTTSSEEEEECCSS
T ss_pred             HHhhCCEEEEEEECCCCCcHHHHHHHHHHHhCCCCEEEEEECccCCcCC-HHHHHHHHHhcCcChhHcCCcccEEEEecC
Confidence            457899999999998765433333333333 578999999999998643 2233333322211   00   258899999


Q ss_pred             CCCCCCHHHHHHHHHHHhhhc
Q psy15351         84 NPNCKGVQKILPTLQHISDNM  104 (352)
Q Consensus        84 ~~~~~gi~~L~~~i~~~~~~~  104 (352)
                      ++  .|+++++++|.+.+...
T Consensus       154 ~~--~gv~~l~~~l~~~~~~~  172 (178)
T 2lkc_A          154 TK--EGLDHLLEMILLVSEME  172 (178)
T ss_dssp             SS--HHHHHHHHHHHHHHHHT
T ss_pred             CC--CCHHHHHHHHHHhhhhh
Confidence            99  99999999998776543

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=98.44  E-value=4.3e-07  Score=76.18  Aligned_cols=91  Identities=14%  Similarity=0.123  Sum_probs=64.1

Q ss_pred             HHHHhhccCEEEEEEcCCCCCCCcC--HHHHHHHh----CCCCEEEEEEcccCCCccc--hHHHHHHHHhhcCCCCcEEE
Q psy15351          8 IEKHLKNVDIVIEVHDSRMPFTGRN--HLLQQSVQ----NIRPMVLVLNKRDLINSKH--ESLIEEKVRKEQSHISEVIF   79 (352)
Q Consensus         8 ~~~~i~~aD~vl~VvDar~p~~~~~--~~l~~~l~----~~k~~ilVlNK~Dl~~~~~--~~~~~~~~~~~~~~~~~v~~   79 (352)
                      ....+..+|++++|+|+.++.+...  ..+..+..    .+.|+++|+||+|+.+...  ..+..++.++.+..   ++.
T Consensus        83 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~---~~~  159 (187)
T 2a9k_A           83 RDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVN---YVE  159 (187)
T ss_dssp             HHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCE---EEE
T ss_pred             HHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCe---EEE
Confidence            3456789999999999987532211  11112222    3789999999999976432  34555555555654   899


Q ss_pred             eecCCCCCCCHHHHHHHHHHHhhh
Q psy15351         80 TNCRNPNCKGVQKILPTLQHISDN  103 (352)
Q Consensus        80 iSa~~~~~~gi~~L~~~i~~~~~~  103 (352)
                      +||+++  .|+++++++|.+.+..
T Consensus       160 ~Sa~~~--~gi~~l~~~l~~~i~~  181 (187)
T 2a9k_A          160 TSAKTR--ANVDKVFFDLMREIRA  181 (187)
T ss_dssp             CCTTTC--TTHHHHHHHHHHHHHH
T ss_pred             eCCCCC--CCHHHHHHHHHHHHHH
Confidence            999999  9999999999876643

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=98.44  E-value=7.5e-08  Score=90.36  Aligned_cols=25  Identities=28%  Similarity=0.367  Sum_probs=22.9

Q ss_pred             CcceEEEEeCCCCCChHHHHHHHhC
Q psy15351        166 VYNTTVMVVGVPNVGKSSIINALRS  190 (352)
Q Consensus       166 ~~~~~v~i~G~pnvGKStliN~l~~  190 (352)
                      .....|+++|+||+|||||+|+|.+
T Consensus        72 ~~~~~v~lvG~pgaGKSTLln~L~~   96 (349)
T 2www_A           72 PLAFRVGLSGPPGAGKSTFIEYFGK   96 (349)
T ss_dssp             CSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             cCceEEEEEcCCCCCHHHHHHHHHH
Confidence            4578999999999999999999985

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=98.43  E-value=3.5e-07  Score=77.09  Aligned_cols=58  Identities=17%  Similarity=0.333  Sum_probs=40.9

Q ss_pred             CcceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCCcEEEEeCCCCC
Q psy15351        166 VYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGIS  232 (352)
Q Consensus       166 ~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~  232 (352)
                      .+.++|+++|.+|||||||+|++.+.     ......++.|.+...   +.. .+..+.++||||..
T Consensus        16 ~~~~~i~v~G~~~~GKssl~~~l~~~-----~~~~~~~t~~~~~~~---~~~-~~~~~~~~Dt~G~~   73 (186)
T 1ksh_A           16 ERELRLLMLGLDNAGKTTILKKFNGE-----DVDTISPTLGFNIKT---LEH-RGFKLNIWDVGGQK   73 (186)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHTTC-----CCSSCCCCSSEEEEE---EEE-TTEEEEEEEECCSH
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHhcC-----CCCcccccCccceEE---EEE-CCEEEEEEECCCCH
Confidence            35799999999999999999999973     233444455544332   222 34578999999973

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=98.43  E-value=7.3e-07  Score=75.08  Aligned_cols=93  Identities=20%  Similarity=0.206  Sum_probs=62.3

Q ss_pred             HHHHhhccCEEEEEEcCCCCCCCcC--HHHHHHHh----CCCCEEEEEEcccCCCccchHHHHHHHHhhcCC--CCcEEE
Q psy15351          8 IEKHLKNVDIVIEVHDSRMPFTGRN--HLLQQSVQ----NIRPMVLVLNKRDLINSKHESLIEEKVRKEQSH--ISEVIF   79 (352)
Q Consensus         8 ~~~~i~~aD~vl~VvDar~p~~~~~--~~l~~~l~----~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~--~~~v~~   79 (352)
                      ....+..+|++++|+|+.++.+...  ..+..++.    .+.|+++|+||+|+.+....+++.+.+......  ..+++.
T Consensus        77 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (181)
T 1fzq_A           77 WRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQS  156 (181)
T ss_dssp             HHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEE
T ss_pred             HHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCCCHHHHHHHhCchhccCCceEEEE
Confidence            3456789999999999987633211  22333332    468999999999998765444444433211110  114889


Q ss_pred             eecCCCCCCCHHHHHHHHHHHhh
Q psy15351         80 TNCRNPNCKGVQKILPTLQHISD  102 (352)
Q Consensus        80 iSa~~~~~~gi~~L~~~i~~~~~  102 (352)
                      +||+++  .|++++++++.+.+.
T Consensus       157 ~Sa~~g--~gi~~l~~~l~~~~~  177 (181)
T 1fzq_A          157 CSALTG--EGVQDGMNWVCKNVN  177 (181)
T ss_dssp             CCTTTC--TTHHHHHHHHHHTC-
T ss_pred             ccCCCC--CCHHHHHHHHHHHHH
Confidence            999999  999999999987654

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=98.43  E-value=2.9e-07  Score=76.69  Aligned_cols=61  Identities=23%  Similarity=0.273  Sum_probs=36.8

Q ss_pred             cceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCC-CcEEEEeCCCCC
Q psy15351        167 YNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEK-PLIYILDTPGIS  232 (352)
Q Consensus       167 ~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~-~~~~l~DtPGi~  232 (352)
                      ..++|+++|.+|||||||+|++.+...    .....+..|.+.... .+...+. -.+.++||||..
T Consensus         6 ~~~~i~v~G~~~~GKSsli~~l~~~~~----~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~Dt~G~~   67 (177)
T 1wms_A            6 SLFKVILLGDGGVGKSSLMNRYVTNKF----DTQLFHTIGVEFLNK-DLEVDGHFVTMQIWDTAGQE   67 (177)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHHSCC----CC----CCSEEEEEE-EEEETTEEEEEEEEECCCCG
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCC----CCCCCCceeeeEEEE-EEEECCEEEEEEEEeCCCch
Confidence            468999999999999999999986311    112223333332221 2222211 268999999953

>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}

Probab=98.43  E-value=7.8e-08  Score=92.33  Aligned_cols=64  Identities=30%  Similarity=0.352  Sum_probs=40.5

Q ss_pred             CcceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCC-CcEEEEeCCCCCCC
Q psy15351        166 VYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEK-PLIYILDTPGISLP  234 (352)
Q Consensus       166 ~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~-~~~~l~DtPGi~~~  234 (352)
                      ...++|+++|.+|+|||||+|+|++     .....++..+|+|.+.........+ ..+.++||||+...
T Consensus        32 ~~~~kI~IvG~~~vGKSTLin~L~~-----~~~~~~~~~~gtT~d~~~~~~~~~~~~~l~liDTpG~~d~   96 (423)
T 3qq5_A           32 GFRRYIVVAGRRNVGKSSFMNALVG-----QNVSIVSDYAGTTTDPVYKSMELHPIGPVTLVDTPGLDDV   96 (423)
T ss_dssp             CCCEEEEEECSCSTTTTTTTTSSCC------------------CCCCEEEEEETTTEEEEEEECSSTTCC
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHc-----CCCCccCCCCCeeeeeEEEEEEECCCCeEEEEECcCCCcc
Confidence            4568999999999999999999997     4455678899999887653333233 37999999999864

>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=98.43  E-value=6.5e-07  Score=85.73  Aligned_cols=98  Identities=17%  Similarity=0.209  Sum_probs=60.2

Q ss_pred             HHHHHHHHhhccCEEEEEEcCCCCC-CCcCHHHHHHHh--CCCCEEEEEEcccCCCccc----hHHHHHHHHhhcCCCCc
Q psy15351          4 GLKDIEKHLKNVDIVIEVHDSRMPF-TGRNHLLQQSVQ--NIRPMVLVLNKRDLINSKH----ESLIEEKVRKEQSHISE   76 (352)
Q Consensus         4 ~~~~~~~~i~~aD~vl~VvDar~p~-~~~~~~l~~~l~--~~k~~ilVlNK~Dl~~~~~----~~~~~~~~~~~~~~~~~   76 (352)
                      ..+.+...+..+|++|+|+|++++. .....+....++  ..+|+++|+||+|+.+.+.    .+++.+++++......+
T Consensus        94 f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~l~~~~iivv~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~  173 (408)
T 1s0u_A           94 LMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEILGIDKIIIVQNKIDLVDEKQAEENYEQIKEFVKGTIAENAP  173 (408)
T ss_dssp             HHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHHTTCCCEEEEEECTTSSCTTTTTTHHHHHHHHHTTSTTTTCC
T ss_pred             HHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHHcCCCeEEEEEEccCCCCHHHHHHHHHHHHHHHhhcCCCCCe
Confidence            3445666778889999999999864 222222222222  3468999999999987543    23444444332111125


Q ss_pred             EEEeecCCCCCCCHHHHHHHHHHHhhh
Q psy15351         77 VIFTNCRNPNCKGVQKILPTLQHISDN  103 (352)
Q Consensus        77 v~~iSa~~~~~~gi~~L~~~i~~~~~~  103 (352)
                      ++.+||+++  .|+++|+++|.+.++.
T Consensus       174 ~i~vSA~~g--~gi~~L~~~l~~~i~~  198 (408)
T 1s0u_A          174 IIPISAHHE--ANIDVLLKAIQDFIPT  198 (408)
T ss_dssp             EEEC--------CHHHHHHHHHHHSCC
T ss_pred             EEEeeCCCC--CCHHHHHHHHHHhCCC
Confidence            999999999  9999999999887654

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=98.42  E-value=5e-07  Score=76.83  Aligned_cols=91  Identities=14%  Similarity=0.009  Sum_probs=61.8

Q ss_pred             HHHHHhhccCEEEEEEcCCCCCCCcC-HHHHHHHh----CCCCEEEEEEcccCCCccc--hHHHHHHHHhh-cCCCCcEE
Q psy15351          7 DIEKHLKNVDIVIEVHDSRMPFTGRN-HLLQQSVQ----NIRPMVLVLNKRDLINSKH--ESLIEEKVRKE-QSHISEVI   78 (352)
Q Consensus         7 ~~~~~i~~aD~vl~VvDar~p~~~~~-~~l~~~l~----~~k~~ilVlNK~Dl~~~~~--~~~~~~~~~~~-~~~~~~v~   78 (352)
                      .....+..+|++|+|+|+.++.+..+ ..+...+.    .+.|+++|+||+|+.+...  .++..++.+.. +.   +++
T Consensus        91 ~~~~~~~~~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~---~~~  167 (192)
T 2il1_A           91 ITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREITRQQGEKFAQQITGM---RFC  167 (192)
T ss_dssp             HHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTSTTC---EEE
T ss_pred             HHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCC---eEE
Confidence            34567789999999999987643322 11122222    3689999999999976432  22333333332 33   489


Q ss_pred             EeecCCCCCCCHHHHHHHHHHHhh
Q psy15351         79 FTNCRNPNCKGVQKILPTLQHISD  102 (352)
Q Consensus        79 ~iSa~~~~~~gi~~L~~~i~~~~~  102 (352)
                      .+||+++  .|+++++++|.+.+.
T Consensus       168 ~~SA~~g--~gi~~l~~~l~~~i~  189 (192)
T 2il1_A          168 EASAKDN--FNVDEIFLKLVDDIL  189 (192)
T ss_dssp             ECBTTTT--BSHHHHHHHHHHHHH
T ss_pred             EEeCCCC--CCHHHHHHHHHHHHH
Confidence            9999999  999999999876553

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=98.42  E-value=3.4e-07  Score=77.67  Aligned_cols=62  Identities=16%  Similarity=0.164  Sum_probs=41.0

Q ss_pred             CcceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCC--CcEEEEeCCCCCC
Q psy15351        166 VYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEK--PLIYILDTPGISL  233 (352)
Q Consensus       166 ~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~--~~~~l~DtPGi~~  233 (352)
                      ...++|+++|.+|||||||+|+|.+.      .......|.+|.+.........+  ..+.++||||...
T Consensus        14 ~~~~ki~v~G~~~~GKSsli~~l~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~   77 (196)
T 3tkl_A           14 DYLFKLLLIGDSGVGKSCLLLRFADD------TYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER   77 (196)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHS------CCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGG
T ss_pred             ccceEEEEECcCCCCHHHHHHHHHcC------CCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHh
Confidence            45689999999999999999999962      22233345554443322222222  2588999999643

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=98.42  E-value=5.1e-07  Score=76.40  Aligned_cols=89  Identities=10%  Similarity=0.013  Sum_probs=62.0

Q ss_pred             HHhhccCEEEEEEcCCCCCCCcC-HHHHHHHh----CCCCEEEEEEcccCCCccc--hHHHHHHHHhhcCCCCcEEEeec
Q psy15351         10 KHLKNVDIVIEVHDSRMPFTGRN-HLLQQSVQ----NIRPMVLVLNKRDLINSKH--ESLIEEKVRKEQSHISEVIFTNC   82 (352)
Q Consensus        10 ~~i~~aD~vl~VvDar~p~~~~~-~~l~~~l~----~~k~~ilVlNK~Dl~~~~~--~~~~~~~~~~~~~~~~~v~~iSa   82 (352)
                      ..+..+|++++|+|+.++.+... ..+...+.    .+.|+++|+||+|+.+...  ..+..++.++.+..   ++.+||
T Consensus        90 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~---~~~~Sa  166 (189)
T 2gf9_A           90 AYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVPAEDGRRLADDLGFE---FFEASA  166 (189)
T ss_dssp             GGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCE---EEECBT
T ss_pred             HhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccCCCHHHHHHHHHHcCCe---EEEEEC
Confidence            46788999999999987532221 11222222    3789999999999976432  23344444445654   999999


Q ss_pred             CCCCCCCHHHHHHHHHHHhhh
Q psy15351         83 RNPNCKGVQKILPTLQHISDN  103 (352)
Q Consensus        83 ~~~~~~gi~~L~~~i~~~~~~  103 (352)
                      +++  .|+++++++|.+.+.+
T Consensus       167 ~~g--~gi~~l~~~l~~~i~~  185 (189)
T 2gf9_A          167 KEN--INVKQVFERLVDVICE  185 (189)
T ss_dssp             TTT--BSHHHHHHHHHHHHHH
T ss_pred             CCC--CCHHHHHHHHHHHHHH
Confidence            999  9999999999876643

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=98.42  E-value=2.9e-07  Score=75.58  Aligned_cols=59  Identities=20%  Similarity=0.332  Sum_probs=36.2

Q ss_pred             ceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEe-eeeEEecCC-CcEEEEeCCCCCC
Q psy15351        168 NTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSV-MSQVKISEK-PLIYILDTPGISL  233 (352)
Q Consensus       168 ~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~-~~~~~~~~~-~~~~l~DtPGi~~  233 (352)
                      .++|+++|.+|||||||+|++.+.     ...  ...+.++... ...+...+. ..+.++||||...
T Consensus         3 ~~~i~v~G~~~~GKSsli~~l~~~-----~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~   63 (167)
T 1kao_A            3 EYKVVVLGSGGVGKSALTVQFVTG-----TFI--EKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQ   63 (167)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHS-----CCC--SCCCTTCCEEEEEEEEETTEEEEEEEEECCCTTC
T ss_pred             EEEEEEECCCCCCHHHHHHHHHcC-----CCc--ccCCCCcceeEEEEEEECCEEEEEEEEECCCchh
Confidence            478999999999999999999863     111  1122222221 112222221 2488999999653

>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A

Probab=98.42  E-value=5.2e-07  Score=92.11  Aligned_cols=26  Identities=27%  Similarity=0.372  Sum_probs=22.5

Q ss_pred             cceEEEEeCCCCCChHHHHHHHhCCC
Q psy15351        167 YNTTVMVVGVPNVGKSSIINALRSSH  192 (352)
Q Consensus       167 ~~~~v~i~G~pnvGKStliN~l~~~~  192 (352)
                      ..++|+++|.+|+|||||+|+|.+..
T Consensus        50 ~lp~I~vvG~~saGKSSllnaL~g~~   75 (772)
T 3zvr_A           50 DLPQIAVVGGQSAGKSSVLENFVGRD   75 (772)
T ss_dssp             CCSEEEEEECTTTCHHHHHHHHHSSC
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence            34689999999999999999999853

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=98.41  E-value=4.3e-07  Score=75.00  Aligned_cols=60  Identities=20%  Similarity=0.217  Sum_probs=36.9

Q ss_pred             cceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCC--cEEEEeCCCCC
Q psy15351        167 YNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKP--LIYILDTPGIS  232 (352)
Q Consensus       167 ~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~--~~~l~DtPGi~  232 (352)
                      ..++|+++|.+|||||||+|++.+...      .....|..+.+.........+.  .+.++||||..
T Consensus         5 ~~~~i~v~G~~~~GKssli~~l~~~~~------~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~   66 (170)
T 1z08_A            5 YSFKVVLLGEGCVGKTSLVLRYCENKF------NDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQE   66 (170)
T ss_dssp             EEEEEEEECCTTSCHHHHHHHHHHCCC------CSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-
T ss_pred             cceEEEEECcCCCCHHHHHHHHHcCCC------CcCCCCccceEEEEEEEEECCEEEEEEEEECCCcH
Confidence            468999999999999999999996321      1122233332222111112222  57889999964

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=98.41  E-value=7.2e-07  Score=73.30  Aligned_cols=88  Identities=20%  Similarity=0.146  Sum_probs=60.4

Q ss_pred             HHHhhccCEEEEEEcCCCCCCCcC--HHHHHHHh----CCCCEEEEEEcccCCCccc--hHHHHHHHHhh-cCCCCcEEE
Q psy15351          9 EKHLKNVDIVIEVHDSRMPFTGRN--HLLQQSVQ----NIRPMVLVLNKRDLINSKH--ESLIEEKVRKE-QSHISEVIF   79 (352)
Q Consensus         9 ~~~i~~aD~vl~VvDar~p~~~~~--~~l~~~l~----~~k~~ilVlNK~Dl~~~~~--~~~~~~~~~~~-~~~~~~v~~   79 (352)
                      ...+..+|++++|+|+.++.+...  ..+..+..    .+.|+++|+||+|+.+...  .++..++.+.. +.   +++.
T Consensus        69 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~---~~~~  145 (167)
T 1c1y_A           69 DLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNC---AFLE  145 (167)
T ss_dssp             HHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSC---EEEE
T ss_pred             HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccccccCCHHHHHHHHHHccCC---cEEE
Confidence            456788999999999987532222  12222222    4789999999999976432  23333444333 33   4899


Q ss_pred             eecCCCCCCCHHHHHHHHHHHh
Q psy15351         80 TNCRNPNCKGVQKILPTLQHIS  101 (352)
Q Consensus        80 iSa~~~~~~gi~~L~~~i~~~~  101 (352)
                      +||+++  .|+++++++|.+.+
T Consensus       146 ~Sa~~~--~gi~~l~~~l~~~i  165 (167)
T 1c1y_A          146 SSAKSK--INVNEIFYDLVRQI  165 (167)
T ss_dssp             CBTTTT--BSHHHHHHHHHHHH
T ss_pred             ecCCCC--CCHHHHHHHHHHHH
Confidence            999999  99999999987654

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=98.41  E-value=6.7e-07  Score=74.50  Aligned_cols=91  Identities=16%  Similarity=0.060  Sum_probs=62.2

Q ss_pred             HHHHhhccCEEEEEEcCCCCCCCcCH-HHHHHHh------CCCC-EEEEEEcccCCCccc--hHHHHHHHHhhcCCCCcE
Q psy15351          8 IEKHLKNVDIVIEVHDSRMPFTGRNH-LLQQSVQ------NIRP-MVLVLNKRDLINSKH--ESLIEEKVRKEQSHISEV   77 (352)
Q Consensus         8 ~~~~i~~aD~vl~VvDar~p~~~~~~-~l~~~l~------~~k~-~ilVlNK~Dl~~~~~--~~~~~~~~~~~~~~~~~v   77 (352)
                      ....+..+|++++|+|+.++.+..+. .+...+.      ...| +++|+||+|+.+...  .++..++.+..+..   +
T Consensus        73 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~---~  149 (178)
T 2hxs_A           73 LDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQENGFS---S  149 (178)
T ss_dssp             HHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCE---E
T ss_pred             hhHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHHHHHcCCc---E
Confidence            34567899999999999876432221 1111111      2566 789999999975432  23344444445654   8


Q ss_pred             EEeecCCCCCCCHHHHHHHHHHHhhh
Q psy15351         78 IFTNCRNPNCKGVQKILPTLQHISDN  103 (352)
Q Consensus        78 ~~iSa~~~~~~gi~~L~~~i~~~~~~  103 (352)
                      +.+||+++  .|+++++++|.+.+..
T Consensus       150 ~~~Sa~~~--~gi~~l~~~l~~~~~~  173 (178)
T 2hxs_A          150 HFVSAKTG--DSVFLCFQKVAAEILG  173 (178)
T ss_dssp             EEECTTTC--TTHHHHHHHHHHHHTT
T ss_pred             EEEeCCCC--CCHHHHHHHHHHHHHh
Confidence            99999999  9999999999876654

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=98.41  E-value=1.1e-06  Score=76.80  Aligned_cols=93  Identities=15%  Similarity=0.062  Sum_probs=60.4

Q ss_pred             HHHhhccCEEEEEEcCCCCCCCcCH---HHHHHHh---CCCCEEEEEEcccCCCccchH----HHHHHHHhhcCCCCcEE
Q psy15351          9 EKHLKNVDIVIEVHDSRMPFTGRNH---LLQQSVQ---NIRPMVLVLNKRDLINSKHES----LIEEKVRKEQSHISEVI   78 (352)
Q Consensus         9 ~~~i~~aD~vl~VvDar~p~~~~~~---~l~~~l~---~~k~~ilVlNK~Dl~~~~~~~----~~~~~~~~~~~~~~~v~   78 (352)
                      ......+|++|+|+|++++.+....   .+...+.   .+.|+++|+||+|+.+.....    ...+.+.+......+++
T Consensus       103 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (228)
T 2qu8_A          103 TALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKNPIKFS  182 (228)
T ss_dssp             HHHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHHCCSCEEEE
T ss_pred             HHhhccccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHhcCCCceEE
Confidence            3446788999999999987554322   2222232   278999999999998654321    12222322221012489


Q ss_pred             EeecCCCCCCCHHHHHHHHHHHhhh
Q psy15351         79 FTNCRNPNCKGVQKILPTLQHISDN  103 (352)
Q Consensus        79 ~iSa~~~~~~gi~~L~~~i~~~~~~  103 (352)
                      .+||+++  .|+++++++|.+.+..
T Consensus       183 ~~SA~~g--~gi~~l~~~l~~~i~~  205 (228)
T 2qu8_A          183 SFSTLTG--VGVEQAKITACELLKN  205 (228)
T ss_dssp             ECCTTTC--TTHHHHHHHHHHHHHH
T ss_pred             EEecccC--CCHHHHHHHHHHHHHH
Confidence            9999999  9999999999876653

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=98.41  E-value=4e-07  Score=75.26  Aligned_cols=59  Identities=19%  Similarity=0.369  Sum_probs=40.2

Q ss_pred             CcceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCCcEEEEeCCCCCC
Q psy15351        166 VYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISL  233 (352)
Q Consensus       166 ~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~~  233 (352)
                      .+.++|+++|.+|||||||+|++.+.     ......++.|.+...   +.. .+..+.++||||...
T Consensus         5 ~~~~~i~v~G~~~~GKssl~~~l~~~-----~~~~~~~t~~~~~~~---~~~-~~~~~~~~Dt~G~~~   63 (171)
T 1upt_A            5 TREMRILILGLDGAGKTTILYRLQVG-----EVVTTIPTIGFNVET---VTY-KNLKFQVWDLGGLTS   63 (171)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHS-----SCCCCCCCSSEEEEE---EEE-TTEEEEEEEECCCGG
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcC-----CCCCcCCcCccceEE---EEE-CCEEEEEEECCCChh
Confidence            35689999999999999999999863     222333344433321   222 345789999999753

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=98.41  E-value=4.2e-07  Score=76.19  Aligned_cols=92  Identities=15%  Similarity=0.093  Sum_probs=62.7

Q ss_pred             HHhhccCEEEEEEcCCCCCCCcC--HHHHHHHh----CCCCEEEEEEcccCCCccchHHHHHHHHhhcCC--CCcEEEee
Q psy15351         10 KHLKNVDIVIEVHDSRMPFTGRN--HLLQQSVQ----NIRPMVLVLNKRDLINSKHESLIEEKVRKEQSH--ISEVIFTN   81 (352)
Q Consensus        10 ~~i~~aD~vl~VvDar~p~~~~~--~~l~~~l~----~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~--~~~v~~iS   81 (352)
                      ..+..+|++++|+|+.++.+...  ..+..++.    .+.|+++|+||+|+.+.....++.+.+......  ..+++.+|
T Consensus        81 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~S  160 (183)
T 1moz_A           81 CYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKELNLVELKDRSWSIVASS  160 (183)
T ss_dssp             GTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCCCHHHHHHHTTTTTCCSSCEEEEEEB
T ss_pred             HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEEcc
Confidence            45788999999999987633221  22333332    467999999999998764444554443221111  11488999


Q ss_pred             cCCCCCCCHHHHHHHHHHHhhh
Q psy15351         82 CRNPNCKGVQKILPTLQHISDN  103 (352)
Q Consensus        82 a~~~~~~gi~~L~~~i~~~~~~  103 (352)
                      |+++  .|+++++++|.+.+.+
T Consensus       161 a~~~--~gi~~l~~~l~~~~~~  180 (183)
T 1moz_A          161 AIKG--EGITEGLDWLIDVIKE  180 (183)
T ss_dssp             GGGT--BTHHHHHHHHHHHHHH
T ss_pred             CCCC--cCHHHHHHHHHHHHHh
Confidence            9999  9999999999876653

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=98.41  E-value=4.1e-07  Score=74.62  Aligned_cols=90  Identities=17%  Similarity=0.107  Sum_probs=62.3

Q ss_pred             HHHHhhccCEEEEEEcCCCCCCCcC--HHHHHHHh----CCCCEEEEEEcccCCCccc--hHHHHHHHHhhcCCCCcEEE
Q psy15351          8 IEKHLKNVDIVIEVHDSRMPFTGRN--HLLQQSVQ----NIRPMVLVLNKRDLINSKH--ESLIEEKVRKEQSHISEVIF   79 (352)
Q Consensus         8 ~~~~i~~aD~vl~VvDar~p~~~~~--~~l~~~l~----~~k~~ilVlNK~Dl~~~~~--~~~~~~~~~~~~~~~~~v~~   79 (352)
                      ....+..+|.+++|+|+.++.+...  ..+..+..    .+.|+++|+||+|+.+...  .....++..+.+.+   ++.
T Consensus        68 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~---~~~  144 (167)
T 1kao_A           68 RDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCP---FME  144 (167)
T ss_dssp             HHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSC---EEE
T ss_pred             HHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccccccCCHHHHHHHHHHhCCC---EEE
Confidence            3456789999999999987532211  11222222    4789999999999975433  23334444445665   999


Q ss_pred             eecCCCCCCCHHHHHHHHHHHhh
Q psy15351         80 TNCRNPNCKGVQKILPTLQHISD  102 (352)
Q Consensus        80 iSa~~~~~~gi~~L~~~i~~~~~  102 (352)
                      +||+++  .|+++++++|.+.+.
T Consensus       145 ~Sa~~~--~gi~~l~~~l~~~~~  165 (167)
T 1kao_A          145 TSAKSK--TMVDELFAEIVRQMN  165 (167)
T ss_dssp             ECTTCH--HHHHHHHHHHHHHHH
T ss_pred             ecCCCC--cCHHHHHHHHHHHHh
Confidence            999999  999999999877654

>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}

Probab=98.40  E-value=1.6e-07  Score=91.24  Aligned_cols=91  Identities=19%  Similarity=0.361  Sum_probs=64.8

Q ss_pred             HHHHHHHhhccCEEEEEEcCCCCCCCcCHHHHHHHhCCCCEEEEEEcccCCCccchHHHHHHHHhhcCCCCcEEEeecCC
Q psy15351          5 LKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHESLIEEKVRKEQSHISEVIFTNCRN   84 (352)
Q Consensus         5 ~~~~~~~i~~aD~vl~VvDar~p~~~~~~~l~~~l~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~v~~iSa~~   84 (352)
                      +++++..+..+|++|+|+|+.++....+..+.+.+ ..+|+++|+||+|+.+........+ + ..+.   +++.+||++
T Consensus       294 i~~~~~~~~~aD~vl~VvD~s~~~~~~~~~i~~~l-~~~piivV~NK~Dl~~~~~~~~~~~-~-~~~~---~~i~iSAkt  367 (462)
T 3geh_A          294 VERSRQAANTADLVLLTIDAATGWTTGDQEIYEQV-KHRPLILVMNKIDLVEKQLITSLEY-P-ENIT---QIVHTAAAQ  367 (462)
T ss_dssp             -----CCCCSCSEEEEEEETTTCSCHHHHHHHHHH-TTSCEEEEEECTTSSCGGGSTTCCC-C-TTCC---CEEEEBTTT
T ss_pred             HHHHhhhhhcCCEEEEEeccCCCCCHHHHHHHHhc-cCCcEEEEEECCCCCcchhhHHHHH-h-ccCC---cEEEEECCC
Confidence            45566678999999999999988766555555555 5689999999999987653221100 0 0122   489999999


Q ss_pred             CCCCCHHHHHHHHHHHhhh
Q psy15351         85 PNCKGVQKILPTLQHISDN  103 (352)
Q Consensus        85 ~~~~gi~~L~~~i~~~~~~  103 (352)
                      +  .|+++|+++|.+.+..
T Consensus       368 g--~Gi~eL~~~i~~~~~~  384 (462)
T 3geh_A          368 K--QGIDSLETAILEIVQT  384 (462)
T ss_dssp             T--BSHHHHHHHHHHHHTT
T ss_pred             C--CCHHHHHHHHHHHHhc
Confidence            9  9999999999887754

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=98.40  E-value=3.1e-07  Score=76.48  Aligned_cols=62  Identities=23%  Similarity=0.300  Sum_probs=39.9

Q ss_pred             CcceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecC-CCcEEEEeCCCCC
Q psy15351        166 VYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISE-KPLIYILDTPGIS  232 (352)
Q Consensus       166 ~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~-~~~~~l~DtPGi~  232 (352)
                      ...++|+++|.+|||||||+|+|.+..    ......+..|.+.... .+.... ...+.++||||..
T Consensus        13 ~~~~~i~v~G~~~~GKSsli~~l~~~~----~~~~~~~t~~~~~~~~-~~~~~~~~~~~~l~Dt~G~~   75 (179)
T 1z0f_A           13 SYIFKYIIIGDMGVGKSCLLHQFTEKK----FMADCPHTIGVEFGTR-IIEVSGQKIKLQIWDTAGQE   75 (179)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHSC----CCSSCTTSCCCCEEEE-EEEETTEEEEEEEEECTTGG
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHcCC----CCCCCCCccceEEEEE-EEEECCeEEEEEEEECCCCh
Confidence            356899999999999999999999632    1122333444443322 222221 1258899999954

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=98.40  E-value=2.8e-07  Score=77.56  Aligned_cols=59  Identities=22%  Similarity=0.384  Sum_probs=43.2

Q ss_pred             CcceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCCcEEEEeCCCCCC
Q psy15351        166 VYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISL  233 (352)
Q Consensus       166 ~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~~  233 (352)
                      .+.++|+++|.+|||||||+|+|.+.     ....+.++.|.+...   +.. .+..+.++||||...
T Consensus        19 ~~~~~i~v~G~~~~GKSsli~~l~~~-----~~~~~~~t~~~~~~~---~~~-~~~~~~i~Dt~G~~~   77 (181)
T 2h17_A           19 SQEHKVIIVGLDNAGKTTILYQFSMN-----EVVHTSPTIGSNVEE---IVI-NNTRFLMWDIGGQES   77 (181)
T ss_dssp             --CEEEEEEEETTSSHHHHHHHHHTT-----SCEEEECCSSSSCEE---EEE-TTEEEEEEEESSSGG
T ss_pred             CceeEEEEECCCCCCHHHHHHHHhcC-----CCCccCCcCceeeEE---EEE-CCEEEEEEECCCCHh
Confidence            45799999999999999999999973     335666777765432   222 345789999999753

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=98.39  E-value=2.4e-07  Score=78.16  Aligned_cols=58  Identities=19%  Similarity=0.350  Sum_probs=43.0

Q ss_pred             CcceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCCcEEEEeCCCCC
Q psy15351        166 VYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGIS  232 (352)
Q Consensus       166 ~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~  232 (352)
                      ...++|+++|.+|||||||+|++.+     .....+.+++|++...   +.. .+..+.++||||..
T Consensus        14 ~~~~ki~ivG~~~vGKSsL~~~l~~-----~~~~~~~~t~g~~~~~---~~~-~~~~l~i~Dt~G~~   71 (181)
T 1fzq_A           14 DQEVRILLLGLDNAGKTTLLKQLAS-----EDISHITPTQGFNIKS---VQS-QGFKLNVWDIGGQR   71 (181)
T ss_dssp             SSCEEEEEEESTTSSHHHHHHHHCC-----SCCEEEEEETTEEEEE---EEE-TTEEEEEEECSSCG
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhc-----CCCCcccCcCCeEEEE---EEE-CCEEEEEEECCCCH
Confidence            4579999999999999999999997     3344556667765432   222 24468999999964

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=98.39  E-value=3.9e-07  Score=83.70  Aligned_cols=92  Identities=14%  Similarity=0.206  Sum_probs=68.6

Q ss_pred             HHHhhccCEEEEEEcCCCCCCCcCHHHHHHHh-CCCCEEEEEEcccCCC-ccchHHHHHHHHhh-cCCCCcEEEeecCCC
Q psy15351          9 EKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQ-NIRPMVLVLNKRDLIN-SKHESLIEEKVRKE-QSHISEVIFTNCRNP   85 (352)
Q Consensus         9 ~~~i~~aD~vl~VvDar~p~~~~~~~l~~~l~-~~k~~ilVlNK~Dl~~-~~~~~~~~~~~~~~-~~~~~~v~~iSa~~~   85 (352)
                      ...+..+|++++|+|+.. ++..+..+.+.+. .+.|.++|+||+|+.. .....+..+.+.+. +.  ..++++||+++
T Consensus        83 ~~~l~~~D~vl~Vvd~~~-~~~~~~~i~~~l~~~~~P~ilvlNK~D~~~~~~~~~~~l~~l~~~~~~--~~~i~iSA~~g  159 (301)
T 1ega_A           83 SSSIGDVELVIFVVEGTR-WTPDDEMVLNKLREGKAPVILAVNKVDNVQEKADLLPHLQFLASQMNF--LDIVPISAETG  159 (301)
T ss_dssp             TSCCCCEEEEEEEEETTC-CCHHHHHHHHHHHSSSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCC--SEEEECCTTTT
T ss_pred             HHHHhcCCEEEEEEeCCC-CCHHHHHHHHHHHhcCCCEEEEEECcccCccHHHHHHHHHHHHHhcCc--CceEEEECCCC
Confidence            456789999999999987 6555555555554 4799999999999987 33344445545432 33  25899999999


Q ss_pred             CCCCHHHHHHHHHHHhhhcc
Q psy15351         86 NCKGVQKILPTLQHISDNMT  105 (352)
Q Consensus        86 ~~~gi~~L~~~i~~~~~~~~  105 (352)
                        .|+++|++.+.+.+++.+
T Consensus       160 --~~v~~l~~~i~~~l~~~~  177 (301)
T 1ega_A          160 --LNVDTIAAIVRKHLPEAT  177 (301)
T ss_dssp             --TTHHHHHHHHHTTCCBCC
T ss_pred             --CCHHHHHHHHHHhCCcCC
Confidence              999999999998877543

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=98.39  E-value=3.1e-07  Score=75.60  Aligned_cols=62  Identities=24%  Similarity=0.295  Sum_probs=37.8

Q ss_pred             cceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecC-CCcEEEEeCCCCCC
Q psy15351        167 YNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISE-KPLIYILDTPGISL  233 (352)
Q Consensus       167 ~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~-~~~~~l~DtPGi~~  233 (352)
                      ..++|+++|.+|||||||+|+|.+...    .....+..|.+... ..+...+ ...+.++||||...
T Consensus         4 ~~~~i~v~G~~~~GKssl~~~l~~~~~----~~~~~~t~~~~~~~-~~~~~~~~~~~~~l~Dt~G~~~   66 (168)
T 1z2a_A            4 VAIKMVVVGNGAVGKSSMIQRYCKGIF----TKDYKKTIGVDFLE-RQIQVNDEDVRLMLWDTAGQEE   66 (168)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHCCC----CCCSSCCCSSSEEE-EEEEETTEEEEEEEECCTTGGG
T ss_pred             eeEEEEEECcCCCCHHHHHHHHHcCCC----CCCCCCceEEEEEE-EEEEECCEEEEEEEEcCCCcHh
Confidence            468999999999999999999986321    11122222222211 1222221 12588999999654

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=98.39  E-value=4.6e-07  Score=74.64  Aligned_cols=89  Identities=15%  Similarity=0.103  Sum_probs=60.7

Q ss_pred             HHHHhhccCEEEEEEcCCCCCCCcC--HHHHHHHh---CCCCEEEEEEcccCCCcc---c--hHHHHHHHHhhcCCCCcE
Q psy15351          8 IEKHLKNVDIVIEVHDSRMPFTGRN--HLLQQSVQ---NIRPMVLVLNKRDLINSK---H--ESLIEEKVRKEQSHISEV   77 (352)
Q Consensus         8 ~~~~i~~aD~vl~VvDar~p~~~~~--~~l~~~l~---~~k~~ilVlNK~Dl~~~~---~--~~~~~~~~~~~~~~~~~v   77 (352)
                      ....+..+|++++|+|++++.+..+  ..+..+..   .+.|+++|+||+|+.+..   .  .....++....+..   +
T Consensus        69 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~---~  145 (170)
T 1ek0_A           69 APXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKGLL---F  145 (170)
T ss_dssp             HHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCE---E
T ss_pred             hhhhhccCcEEEEEEecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCccccccccCCCHHHHHHHHHHcCCE---E
Confidence            4456789999999999987633211  11112222   367899999999997642   1  12233333344554   8


Q ss_pred             EEeecCCCCCCCHHHHHHHHHHHh
Q psy15351         78 IFTNCRNPNCKGVQKILPTLQHIS  101 (352)
Q Consensus        78 ~~iSa~~~~~~gi~~L~~~i~~~~  101 (352)
                      +.+||+++  .|+++++++|.+.+
T Consensus       146 ~~~Sa~~~--~gi~~l~~~l~~~i  167 (170)
T 1ek0_A          146 FETSAKTG--ENVNDVFLGIGEKI  167 (170)
T ss_dssp             EECCTTTC--TTHHHHHHHHHTTS
T ss_pred             EEEeCCCC--CCHHHHHHHHHHHH
Confidence            99999999  99999999987654

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=98.39  E-value=6.8e-07  Score=73.52  Aligned_cols=88  Identities=15%  Similarity=0.130  Sum_probs=61.9

Q ss_pred             HHHhhccCEEEEEEcCCCCCCCcC--HHHHHHHh--CCCCEEEEEEcccCCCccc--hHHHHHHHHhhcCCCCcEEEeec
Q psy15351          9 EKHLKNVDIVIEVHDSRMPFTGRN--HLLQQSVQ--NIRPMVLVLNKRDLINSKH--ESLIEEKVRKEQSHISEVIFTNC   82 (352)
Q Consensus         9 ~~~i~~aD~vl~VvDar~p~~~~~--~~l~~~l~--~~k~~ilVlNK~Dl~~~~~--~~~~~~~~~~~~~~~~~v~~iSa   82 (352)
                      ...+..+|++++|+|+.++.+...  ..+..+..  .+.|+++|+||+|+.+...  ..+..++.++.+.+   ++.+||
T Consensus        72 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~---~~~~Sa  148 (168)
T 1z2a_A           72 KAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLR---FYRTSV  148 (168)
T ss_dssp             HHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCSCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCE---EEECBT
T ss_pred             HHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccCcccccCHHHHHHHHHHcCCe---EEEEec
Confidence            456789999999999987542221  11122221  4789999999999976432  33444445455664   999999


Q ss_pred             CCCCCCCHHHHHHHHHHHh
Q psy15351         83 RNPNCKGVQKILPTLQHIS  101 (352)
Q Consensus        83 ~~~~~~gi~~L~~~i~~~~  101 (352)
                      +++  .|+++++++|.+.+
T Consensus       149 ~~~--~~i~~l~~~l~~~~  165 (168)
T 1z2a_A          149 KED--LNVSEVFKYLAEKH  165 (168)
T ss_dssp             TTT--BSSHHHHHHHHHHH
T ss_pred             CCC--CCHHHHHHHHHHHH
Confidence            999  99999999987654

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=98.39  E-value=4.5e-07  Score=76.21  Aligned_cols=61  Identities=18%  Similarity=0.256  Sum_probs=39.4

Q ss_pred             CcceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeee-eEEecCC-CcEEEEeCCCCC
Q psy15351        166 VYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMS-QVKISEK-PLIYILDTPGIS  232 (352)
Q Consensus       166 ~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~-~~~~~~~-~~~~l~DtPGi~  232 (352)
                      ...++|+++|.+|||||||+|+|.+..      ......|.++.+... .+...+. ..+.++||||..
T Consensus         8 ~~~~ki~v~G~~~~GKSsli~~l~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~   70 (186)
T 2bme_A            8 DFLFKFLVIGNAGTGKSCLLHQFIEKK------FKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQE   70 (186)
T ss_dssp             SEEEEEEEEESTTSSHHHHHHHHHHSS------CCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSG
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHcCC------CCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcH
Confidence            356899999999999999999998631      122233444433322 2222221 268899999954

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...

Probab=98.39  E-value=1.3e-07  Score=82.43  Aligned_cols=64  Identities=14%  Similarity=0.090  Sum_probs=45.6

Q ss_pred             CcceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCCcEEEEeCCCCCC
Q psy15351        166 VYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISL  233 (352)
Q Consensus       166 ~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~~  233 (352)
                      ...++|+++|.+|||||||+|++...    .....+.+.+|+|..............+.++||||...
T Consensus        13 ~~~~ki~v~G~~~~GKSsli~~~~~~----~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~   76 (221)
T 3gj0_A           13 QVQFKLVLVGDGGTGKTTFVKRHLTG----EFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEK   76 (221)
T ss_dssp             CCEEEEEEEECTTSSHHHHHTTBHHH----HHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGG
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHcC----CCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHH
Confidence            45689999999999999999995431    23456678889888765322211223588999999653

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=98.39  E-value=5.2e-07  Score=74.05  Aligned_cols=60  Identities=25%  Similarity=0.222  Sum_probs=36.4

Q ss_pred             cceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeee-eEEecCC-CcEEEEeCCCCCC
Q psy15351        167 YNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMS-QVKISEK-PLIYILDTPGISL  233 (352)
Q Consensus       167 ~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~-~~~~~~~-~~~~l~DtPGi~~  233 (352)
                      +.++|+++|.+|||||||+|+|.+.     .  .....++++..... .+...+. -.+.++||||...
T Consensus         3 ~~~~i~v~G~~~~GKssl~~~l~~~-----~--~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~   64 (168)
T 1u8z_A            3 ALHKVIMVGSGGVGKSALTLQFMYD-----E--FVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQED   64 (168)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHS-----C--CCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHhC-----c--cCCCCCCCcceEEEEEEEECCEEEEEEEEECCCcch
Confidence            3588999999999999999999963     2  11222333322222 2222221 2588999999653

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=98.39  E-value=2.9e-07  Score=75.95  Aligned_cols=60  Identities=15%  Similarity=0.146  Sum_probs=35.6

Q ss_pred             ceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCC--cEEEEeCCCCCC
Q psy15351        168 NTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKP--LIYILDTPGISL  233 (352)
Q Consensus       168 ~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~--~~~l~DtPGi~~  233 (352)
                      .++|+++|.+|||||||+|+|.+..      ......|.++.+.........+.  .+.++||||...
T Consensus         3 ~~~i~v~G~~~~GKssli~~l~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~   64 (170)
T 1g16_A            3 IMKILLIGDSGVGKSCLLVRFVEDK------FNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQER   64 (170)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHCC------CCC-------CCEEEEEEESSSCEEEEEEECCTTGGG
T ss_pred             ceEEEEECcCCCCHHHHHHHHHhCC------CCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChh
Confidence            4789999999999999999999632      11223333333322211122222  578999999654

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=98.39  E-value=6.2e-07  Score=76.17  Aligned_cols=90  Identities=13%  Similarity=0.055  Sum_probs=62.5

Q ss_pred             HHhhccCEEEEEEcCCCCCCCcC--HHHHHHHh---CCCCEEEEEEcccCCCcc----chHHHHHHHHhhcCCCCcEEEe
Q psy15351         10 KHLKNVDIVIEVHDSRMPFTGRN--HLLQQSVQ---NIRPMVLVLNKRDLINSK----HESLIEEKVRKEQSHISEVIFT   80 (352)
Q Consensus        10 ~~i~~aD~vl~VvDar~p~~~~~--~~l~~~l~---~~k~~ilVlNK~Dl~~~~----~~~~~~~~~~~~~~~~~~v~~i   80 (352)
                      ..+..+|++++|+|+.++.+..+  ..+...+.   .+.|+++|+||+|+.+..    ..++..++.+..+..  .++.+
T Consensus        90 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~--~~~~~  167 (194)
T 3reg_A           90 LSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCV--AYIEA  167 (194)
T ss_dssp             GGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHTCS--CEEEC
T ss_pred             hhccCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccCCCCcccHHHHHHHHHhcCCC--EEEEe
Confidence            46788999999999987633222  12222222   468999999999997531    123444444444543  48999


Q ss_pred             ecCCCCCCCHHHHHHHHHHHhhh
Q psy15351         81 NCRNPNCKGVQKILPTLQHISDN  103 (352)
Q Consensus        81 Sa~~~~~~gi~~L~~~i~~~~~~  103 (352)
                      ||+++  .|++++++++.+.+..
T Consensus       168 Sa~~~--~gi~~l~~~l~~~i~~  188 (194)
T 3reg_A          168 SSVAK--IGLNEVFEKSVDCIFS  188 (194)
T ss_dssp             BTTTT--BSHHHHHHHHHHHHHC
T ss_pred             ecCCC--CCHHHHHHHHHHHHHh
Confidence            99999  9999999998876643

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=98.39  E-value=3.9e-07  Score=78.00  Aligned_cols=61  Identities=20%  Similarity=0.367  Sum_probs=40.4

Q ss_pred             cceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecC-CCcEEEEeCCCCC
Q psy15351        167 YNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISE-KPLIYILDTPGIS  232 (352)
Q Consensus       167 ~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~-~~~~~l~DtPGi~  232 (352)
                      ..++|+++|.+|||||||+|+|.+...    .....+..|++.... .+.... ...+.++||||..
T Consensus         7 ~~~ki~v~G~~~~GKSsli~~l~~~~~----~~~~~~t~~~~~~~~-~~~~~~~~~~~~l~Dt~G~~   68 (203)
T 1zbd_A            7 YMFKILIIGNSSVGKTSFLFRYADDSF----TPAFVSTVGIDFKVK-TIYRNDKRIKLQIWDTAGLE   68 (203)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHTCCC----CSCCCCCCSEEEEEE-EEEETTEEEEEEEEEECCSG
T ss_pred             eeeEEEEECCCCCCHHHHHHHHhcCCC----CCCcCCccceeEEEE-EEEECCeEEEEEEEECCCch
Confidence            458999999999999999999997321    122334445554432 222221 2268999999974

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=98.39  E-value=5.7e-07  Score=76.38  Aligned_cols=26  Identities=31%  Similarity=0.414  Sum_probs=23.4

Q ss_pred             CcceEEEEeCCCCCChHHHHHHHhCC
Q psy15351        166 VYNTTVMVVGVPNVGKSSIINALRSS  191 (352)
Q Consensus       166 ~~~~~v~i~G~pnvGKStliN~l~~~  191 (352)
                      ...++|+++|.+|||||||+|+|.+.
T Consensus         5 ~~~~ki~v~G~~~~GKSsli~~l~~~   30 (208)
T 3clv_A            5 KSSYKTVLLGESSVGKSSIVLRLTKD   30 (208)
T ss_dssp             CSSEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHhC
Confidence            35689999999999999999999974

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=98.39  E-value=5.8e-07  Score=74.09  Aligned_cols=90  Identities=12%  Similarity=0.059  Sum_probs=61.1

Q ss_pred             HHHHhhccCEEEEEEcCCCCCCCcC-HHHHHHHh----CCCCEEEEEEcccCCCccc--hHHHHHHHHhhcCCCCcEEEe
Q psy15351          8 IEKHLKNVDIVIEVHDSRMPFTGRN-HLLQQSVQ----NIRPMVLVLNKRDLINSKH--ESLIEEKVRKEQSHISEVIFT   80 (352)
Q Consensus         8 ~~~~i~~aD~vl~VvDar~p~~~~~-~~l~~~l~----~~k~~ilVlNK~Dl~~~~~--~~~~~~~~~~~~~~~~~v~~i   80 (352)
                      ....+..+|++++|+|+.++.+... ..+...+.    ...|+++|+||+|+.+...  .+...++....+.   +++.+
T Consensus        72 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~v~~~~~~~~~~~~~~---~~~~~  148 (170)
T 1z0j_A           72 APMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHA---IFVET  148 (170)
T ss_dssp             THHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTC---EEEEC
T ss_pred             cHhhCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCccccccccCHHHHHHHHHHcCC---EEEEE
Confidence            3456789999999999987643221 11222222    4578999999999986433  2233333334454   48999


Q ss_pred             ecCCCCCCCHHHHHHHHHHHhh
Q psy15351         81 NCRNPNCKGVQKILPTLQHISD  102 (352)
Q Consensus        81 Sa~~~~~~gi~~L~~~i~~~~~  102 (352)
                      ||+++  .|+++++++|.+.+.
T Consensus       149 Sa~~~--~~i~~l~~~i~~~i~  168 (170)
T 1z0j_A          149 SAKNA--ININELFIEISRRIP  168 (170)
T ss_dssp             BTTTT--BSHHHHHHHHHHHCC
T ss_pred             eCCCC--cCHHHHHHHHHHHHh
Confidence            99999  999999999876553

>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*

Probab=98.38  E-value=1.6e-07  Score=95.83  Aligned_cols=37  Identities=24%  Similarity=0.271  Sum_probs=32.1

Q ss_pred             CcceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCc
Q psy15351        166 VYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGV  207 (352)
Q Consensus       166 ~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~  207 (352)
                      ...++|+++|.||+|||||+|+|.+     .....++..|+|
T Consensus        67 ~~~~~V~VvG~~naGKSSLlNaLlg-----~~~~~v~~~p~T  103 (695)
T 2j69_A           67 QGVFRLLVLGDMKRGKSTFLNALIG-----ENLLPSDVNPCT  103 (695)
T ss_dssp             HCCEEEEEECCTTSCHHHHHHHHHT-----SSCSCCCCCTTT
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhC-----CCCCCCCCCCCc
Confidence            3579999999999999999999998     456677888887

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=98.38  E-value=6.1e-07  Score=76.85  Aligned_cols=89  Identities=13%  Similarity=0.064  Sum_probs=60.0

Q ss_pred             HHhhccCEEEEEEcCCCCCCCc--CHHHHHHHh----CCCCEEEEEEcccCCCccchHHHHHHHHhhc------------
Q psy15351         10 KHLKNVDIVIEVHDSRMPFTGR--NHLLQQSVQ----NIRPMVLVLNKRDLINSKHESLIEEKVRKEQ------------   71 (352)
Q Consensus        10 ~~i~~aD~vl~VvDar~p~~~~--~~~l~~~l~----~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~------------   71 (352)
                      ..+..+|++++|+|+.++.+..  ...+.++++    .+.|+++|+||+|+......++..+++....            
T Consensus        88 ~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (198)
T 1f6b_A           88 NYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKE  167 (198)
T ss_dssp             GGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTCCCHHHHHHHHTCTTTCCCSSCCCTTT
T ss_pred             HHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccccCCHHHHHHHhCccccccccccccccc
Confidence            4578999999999998763221  122333332    4689999999999976433444444443211            


Q ss_pred             --CCCCcEEEeecCCCCCCCHHHHHHHHHHH
Q psy15351         72 --SHISEVIFTNCRNPNCKGVQKILPTLQHI  100 (352)
Q Consensus        72 --~~~~~v~~iSa~~~~~~gi~~L~~~i~~~  100 (352)
                        ....+++.+||+++  .|+++++++|.+.
T Consensus       168 ~~~~~~~~~~~SA~~g--~gv~~l~~~l~~~  196 (198)
T 1f6b_A          168 LNARPLEVFMCSVLKR--QGYGEGFRWMAQY  196 (198)
T ss_dssp             CCSCCEEEEECBTTTT--BSHHHHHHHHHTT
T ss_pred             ccCceEEEEEEECCCC--CCHHHHHHHHHHh
Confidence              11125889999999  9999999998654

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=98.38  E-value=1.1e-06  Score=75.34  Aligned_cols=92  Identities=12%  Similarity=0.027  Sum_probs=64.1

Q ss_pred             HHHHhhccCEEEEEEcCCCCCCCcC--HHHHHHHh---CCCCEEEEEEcccCCCccc--hHHHHHHHHhhcCCCCcEEEe
Q psy15351          8 IEKHLKNVDIVIEVHDSRMPFTGRN--HLLQQSVQ---NIRPMVLVLNKRDLINSKH--ESLIEEKVRKEQSHISEVIFT   80 (352)
Q Consensus         8 ~~~~i~~aD~vl~VvDar~p~~~~~--~~l~~~l~---~~k~~ilVlNK~Dl~~~~~--~~~~~~~~~~~~~~~~~v~~i   80 (352)
                      ....+..+|++|+|+|+.++.+...  ..+..+..   .+.|+++|+||+|+.+...  .++..++....+..  +++.+
T Consensus        95 ~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~--~~~~~  172 (201)
T 2hup_A           95 TQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELREVSLAEAQSLAEHYDIL--CAIET  172 (201)
T ss_dssp             HHHHHTTCSEEEEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCS--EEEEC
T ss_pred             HHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCccccccccCHHHHHHHHHHcCCC--EEEEE
Confidence            4567889999999999987533211  11222222   4679999999999976322  34444555555652  48999


Q ss_pred             ecCCCCCCCHHHHHHHHHHHhhh
Q psy15351         81 NCRNPNCKGVQKILPTLQHISDN  103 (352)
Q Consensus        81 Sa~~~~~~gi~~L~~~i~~~~~~  103 (352)
                      ||+++  .|+++++++|.+.+..
T Consensus       173 SA~~g--~gi~~l~~~l~~~i~~  193 (201)
T 2hup_A          173 SAKDS--SNVEEAFLRVATELIM  193 (201)
T ss_dssp             BTTTT--BSHHHHHHHHHHHHHH
T ss_pred             eCCCC--CCHHHHHHHHHHHHHH
Confidence            99999  9999999998876654

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=98.38  E-value=9.3e-07  Score=74.94  Aligned_cols=91  Identities=10%  Similarity=-0.009  Sum_probs=62.3

Q ss_pred             HHHHhhccCEEEEEEcCCCCCCCcC-HHHHHHHh----CCCCEEEEEEcccCCCccc--hHHHHHHHHhhcCCCCcEEEe
Q psy15351          8 IEKHLKNVDIVIEVHDSRMPFTGRN-HLLQQSVQ----NIRPMVLVLNKRDLINSKH--ESLIEEKVRKEQSHISEVIFT   80 (352)
Q Consensus         8 ~~~~i~~aD~vl~VvDar~p~~~~~-~~l~~~l~----~~k~~ilVlNK~Dl~~~~~--~~~~~~~~~~~~~~~~~v~~i   80 (352)
                      ....+..+|++++|+|+.++.+... ..+...+.    .+.|+++|+||+|+.+...  ......+....+..   ++.+
T Consensus        89 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~---~~~~  165 (191)
T 3dz8_A           89 TTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEERVVPTEKGQLLAEQLGFD---FFEA  165 (191)
T ss_dssp             HHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCE---EEEC
T ss_pred             HHHHHccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCe---EEEE
Confidence            4457889999999999986532211 11222222    3689999999999975432  23333333444654   9999


Q ss_pred             ecCCCCCCCHHHHHHHHHHHhhh
Q psy15351         81 NCRNPNCKGVQKILPTLQHISDN  103 (352)
Q Consensus        81 Sa~~~~~~gi~~L~~~i~~~~~~  103 (352)
                      ||+++  .|+++++++|.+.+..
T Consensus       166 Sa~~~--~gi~~l~~~l~~~i~~  186 (191)
T 3dz8_A          166 SAKEN--ISVRQAFERLVDAICD  186 (191)
T ss_dssp             BTTTT--BSHHHHHHHHHHHHHH
T ss_pred             ECCCC--CCHHHHHHHHHHHHHH
Confidence            99999  9999999998876543

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=98.38  E-value=3.9e-07  Score=75.87  Aligned_cols=61  Identities=20%  Similarity=0.230  Sum_probs=39.5

Q ss_pred             cceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCC--CcEEEEeCCCCCC
Q psy15351        167 YNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEK--PLIYILDTPGISL  233 (352)
Q Consensus       167 ~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~--~~~~l~DtPGi~~  233 (352)
                      ..++|+++|.+|||||||+|+|.+..      ......|.++.+.........+  ..+.++||||...
T Consensus        13 ~~~~i~v~G~~~~GKssli~~l~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~   75 (179)
T 2y8e_A           13 RKFKLVFLGEQSVGKTSLITRFMYDS------FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER   75 (179)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHSC------CCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGG
T ss_pred             cceEEEEECCCCCCHHHHHHHHHcCC------CCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHH
Confidence            45899999999999999999998621      1222344444443322222222  2588999999643

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=98.38  E-value=8.9e-07  Score=75.05  Aligned_cols=89  Identities=16%  Similarity=0.055  Sum_probs=61.6

Q ss_pred             HHHhhccCEEEEEEcCCCCCCCcC--HHHHHHHh---CCCCEEEEEEcccCCCccc--hHHHHHHHHhhcCCCCcEEEee
Q psy15351          9 EKHLKNVDIVIEVHDSRMPFTGRN--HLLQQSVQ---NIRPMVLVLNKRDLINSKH--ESLIEEKVRKEQSHISEVIFTN   81 (352)
Q Consensus         9 ~~~i~~aD~vl~VvDar~p~~~~~--~~l~~~l~---~~k~~ilVlNK~Dl~~~~~--~~~~~~~~~~~~~~~~~v~~iS   81 (352)
                      ...+..+|++++|+|+.++.+..+  ..+..+..   .+.|+++|+||+|+.+...  .++..++..+.+..   ++.+|
T Consensus        88 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~---~~~~S  164 (191)
T 2a5j_A           88 RSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLI---FMETS  164 (191)
T ss_dssp             HHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCE---EEEEC
T ss_pred             HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCCccccCHHHHHHHHHHcCCE---EEEEe
Confidence            456789999999999987543222  11112211   3789999999999975432  23344444455654   89999


Q ss_pred             cCCCCCCCHHHHHHHHHHHhh
Q psy15351         82 CRNPNCKGVQKILPTLQHISD  102 (352)
Q Consensus        82 a~~~~~~gi~~L~~~i~~~~~  102 (352)
                      |+++  .|+++++++|.+.+.
T Consensus       165 a~~~--~gi~~l~~~l~~~i~  183 (191)
T 2a5j_A          165 AKTA--CNVEEAFINTAKEIY  183 (191)
T ss_dssp             TTTC--TTHHHHHHHHHHHHH
T ss_pred             CCCC--CCHHHHHHHHHHHHH
Confidence            9999  999999999876554

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=98.38  E-value=1.8e-06  Score=70.56  Aligned_cols=89  Identities=21%  Similarity=0.179  Sum_probs=61.6

Q ss_pred             HHHhhccCEEEEEEcCCCCCCCcC-HHHH-HHHh----CCCCEEEEEEcccCCCccc-hHHHHHHHHhhcCCCCcEEEee
Q psy15351          9 EKHLKNVDIVIEVHDSRMPFTGRN-HLLQ-QSVQ----NIRPMVLVLNKRDLINSKH-ESLIEEKVRKEQSHISEVIFTN   81 (352)
Q Consensus         9 ~~~i~~aD~vl~VvDar~p~~~~~-~~l~-~~l~----~~k~~ilVlNK~Dl~~~~~-~~~~~~~~~~~~~~~~~v~~iS   81 (352)
                      ...+..+|.+++|+|+.++.+... ..+. .+..    .+.|+++|+||+|+.+... .....++.++.+.+   ++.+|
T Consensus        69 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~---~~~~S  145 (166)
T 2ce2_X           69 DQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAARTVESRQAQDLARSYGIP---YIETS  145 (166)
T ss_dssp             HHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHHHHHTCC---EEEEC
T ss_pred             HHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhhcccCHHHHHHHHHHcCCe---EEEec
Confidence            346788999999999986532211 1111 1111    2789999999999987433 23334444445665   99999


Q ss_pred             cCCCCCCCHHHHHHHHHHHhh
Q psy15351         82 CRNPNCKGVQKILPTLQHISD  102 (352)
Q Consensus        82 a~~~~~~gi~~L~~~i~~~~~  102 (352)
                      |+++  .|+++++++|.+.+.
T Consensus       146 a~~~--~gi~~l~~~l~~~~~  164 (166)
T 2ce2_X          146 AKTR--QGVEDAFYTLVREIR  164 (166)
T ss_dssp             TTTC--TTHHHHHHHHHHHHH
T ss_pred             CCCC--CCHHHHHHHHHHHHH
Confidence            9999  999999999876653

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=98.38  E-value=2e-06  Score=80.78  Aligned_cols=86  Identities=15%  Similarity=0.160  Sum_probs=62.0

Q ss_pred             hccCEEEEEEcCCCCCCCc-C--HHHHHHHh---CCCCEEEEEEcccCCCccchHHHHHHHHhhcCCCCcEEEeecCCCC
Q psy15351         13 KNVDIVIEVHDSRMPFTGR-N--HLLQQSVQ---NIRPMVLVLNKRDLINSKHESLIEEKVRKEQSHISEVIFTNCRNPN   86 (352)
Q Consensus        13 ~~aD~vl~VvDar~p~~~~-~--~~l~~~l~---~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~v~~iSa~~~~   86 (352)
                      ..+|.+++|+|+..+.... .  ..+...+.   .++|+++|+||+|+.+.....+..+++...+.+   ++.+||+++ 
T Consensus       245 ~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~---~~~iSA~~g-  320 (357)
T 2e87_A          245 YLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDVADEENIKRLEKFVKEKGLN---PIKISALKG-  320 (357)
T ss_dssp             GTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTTTCCHHHHHHHHHHHHHTTCC---CEECBTTTT-
T ss_pred             hcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECcccCChHHHHHHHHHHHhcCCC---eEEEeCCCC-
Confidence            4699999999987653211 1  11222222   379999999999998765555555555555555   899999999 


Q ss_pred             CCCHHHHHHHHHHHhhh
Q psy15351         87 CKGVQKILPTLQHISDN  103 (352)
Q Consensus        87 ~~gi~~L~~~i~~~~~~  103 (352)
                       +|+++++++|.+.+..
T Consensus       321 -~gi~~l~~~i~~~l~~  336 (357)
T 2e87_A          321 -TGIDLVKEEIIKTLRP  336 (357)
T ss_dssp             -BTHHHHHHHHHHHHHH
T ss_pred             -cCHHHHHHHHHHHHHH
Confidence             9999999999877654

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=98.38  E-value=5.5e-07  Score=75.04  Aligned_cols=62  Identities=23%  Similarity=0.184  Sum_probs=41.1

Q ss_pred             CcceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCC--CcEEEEeCCCCCCC
Q psy15351        166 VYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEK--PLIYILDTPGISLP  234 (352)
Q Consensus       166 ~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~--~~~~l~DtPGi~~~  234 (352)
                      ...++|+++|.+|||||||+|+|.+.       ......++++...........+  ..+.++||||....
T Consensus         7 ~~~~~i~v~G~~~~GKssli~~l~~~-------~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~   70 (181)
T 2fn4_A            7 SETHKLVVVGGGGVGKSALTIQFIQS-------YFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEF   70 (181)
T ss_dssp             SCEEEEEEEECTTSSHHHHHHHHHHS-------SCCSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTT
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhC-------cCccccCCCcCceEEEEEEECCEEEEEEEEECCCchhh
Confidence            35689999999999999999999963       1233444554443222222222  25788999997653

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=98.38  E-value=9.7e-07  Score=72.80  Aligned_cols=91  Identities=18%  Similarity=0.125  Sum_probs=61.8

Q ss_pred             HHHHhhccCEEEEEEcCCCCCCCcC-HHHH-HHHh-----CCCCEEEEEEcccCCCccch--HHHHHHHHhhcCCCCcEE
Q psy15351          8 IEKHLKNVDIVIEVHDSRMPFTGRN-HLLQ-QSVQ-----NIRPMVLVLNKRDLINSKHE--SLIEEKVRKEQSHISEVI   78 (352)
Q Consensus         8 ~~~~i~~aD~vl~VvDar~p~~~~~-~~l~-~~l~-----~~k~~ilVlNK~Dl~~~~~~--~~~~~~~~~~~~~~~~v~   78 (352)
                      ....+..+|++++|+|+.++.+... ..+. .+..     .+.|+++|+||+|+.+....  ....++....+..   ++
T Consensus        68 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~~~~~~~~~~~---~~  144 (172)
T 2erx_A           68 QRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWKCA---FM  144 (172)
T ss_dssp             HHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCE---EE
T ss_pred             HHHhcccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCe---EE
Confidence            3456788999999999987533221 1222 2221     36899999999999765332  2223333344554   89


Q ss_pred             EeecCCCCCCCHHHHHHHHHHHhhh
Q psy15351         79 FTNCRNPNCKGVQKILPTLQHISDN  103 (352)
Q Consensus        79 ~iSa~~~~~~gi~~L~~~i~~~~~~  103 (352)
                      .+||+++  .|+++++++|.+.+..
T Consensus       145 ~~Sa~~~--~gi~~l~~~l~~~~~~  167 (172)
T 2erx_A          145 ETSAKLN--HNVKELFQELLNLEKR  167 (172)
T ss_dssp             ECBTTTT--BSHHHHHHHHHHTCCS
T ss_pred             EecCCCC--cCHHHHHHHHHHHHhh
Confidence            9999999  9999999999876653

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=98.37  E-value=4e-07  Score=78.34  Aligned_cols=62  Identities=18%  Similarity=0.195  Sum_probs=38.9

Q ss_pred             CcceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeee-eEEecCC-CcEEEEeCCCCCC
Q psy15351        166 VYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMS-QVKISEK-PLIYILDTPGISL  233 (352)
Q Consensus       166 ~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~-~~~~~~~-~~~~l~DtPGi~~  233 (352)
                      ...++|+++|.+|||||||+|+|.+..      ......|.++.+... .+...+. ..+.++||||...
T Consensus        18 ~~~~~i~v~G~~~~GKSsli~~l~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~   81 (213)
T 3cph_A           18 DSIMKILLIGDSGVGKSCLLVRFVEDK------FNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQER   81 (213)
T ss_dssp             --CEEEEEECSTTSSHHHHHHHHHHCC------CCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGG
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHhCC------CCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHH
Confidence            456899999999999999999999632      122233443333322 2222221 2589999999654

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=98.37  E-value=8.4e-07  Score=76.74  Aligned_cols=89  Identities=17%  Similarity=0.105  Sum_probs=63.3

Q ss_pred             HHHHhhccCEEEEEEcCCCCCCCcCHHHHHHHh--------CCCCEEEEEEcccCCCccc--hHHHHHHHHhhcCCCCcE
Q psy15351          8 IEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQ--------NIRPMVLVLNKRDLINSKH--ESLIEEKVRKEQSHISEV   77 (352)
Q Consensus         8 ~~~~i~~aD~vl~VvDar~p~~~~~~~l~~~l~--------~~k~~ilVlNK~Dl~~~~~--~~~~~~~~~~~~~~~~~v   77 (352)
                      ....+..+|++|+|+|+.++.+.  ..+..++.        .+.|+++|+||+|+.+...  .....++....+..   +
T Consensus       101 ~~~~~~~~d~iilV~D~~~~~s~--~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~---~  175 (217)
T 2f7s_A          101 TTAFFRDAMGFLLMFDLTSQQSF--LNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADKYGIP---Y  175 (217)
T ss_dssp             HHHHHTTCCEEEEEEETTCHHHH--HHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCC---E
T ss_pred             HHHHhcCCCEEEEEEECcCHHHH--HHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHHHHHHHHHHCCCc---E
Confidence            45678999999999999875322  22333332        2578999999999976432  23334444445665   9


Q ss_pred             EEeecCCCCCCCHHHHHHHHHHHhhh
Q psy15351         78 IFTNCRNPNCKGVQKILPTLQHISDN  103 (352)
Q Consensus        78 ~~iSa~~~~~~gi~~L~~~i~~~~~~  103 (352)
                      +.+||+++  .|+++++++|.+.+..
T Consensus       176 ~~~Sa~~g--~gi~~l~~~l~~~i~~  199 (217)
T 2f7s_A          176 FETSAATG--QNVEKAVETLLDLIMK  199 (217)
T ss_dssp             EEEBTTTT--BTHHHHHHHHHHHHHH
T ss_pred             EEEECCCC--CCHHHHHHHHHHHHHH
Confidence            99999999  9999999998876543

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=98.37  E-value=9.6e-07  Score=72.86  Aligned_cols=87  Identities=16%  Similarity=0.047  Sum_probs=60.4

Q ss_pred             HhhccCEEEEEEcCCCCCCCcC--HHHHHHHh----CCCCEEEEEEcccCCCccc--hHHHHHHHHhhcCCCCcEEEeec
Q psy15351         11 HLKNVDIVIEVHDSRMPFTGRN--HLLQQSVQ----NIRPMVLVLNKRDLINSKH--ESLIEEKVRKEQSHISEVIFTNC   82 (352)
Q Consensus        11 ~i~~aD~vl~VvDar~p~~~~~--~~l~~~l~----~~k~~ilVlNK~Dl~~~~~--~~~~~~~~~~~~~~~~~v~~iSa   82 (352)
                      .+..+|++++|+|+.++.+...  ..+..+..    .+.|+++|+||+|+.+...  ..+..++.+..+..   ++.+||
T Consensus        72 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~---~~~~Sa  148 (169)
T 3q85_A           72 CLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCK---HIETSA  148 (169)
T ss_dssp             HHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCE---EEECBT
T ss_pred             hhccCCEEEEEEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCCHHHHHHHHHHcCCc---EEEecC
Confidence            4677999999999987532221  22223332    2789999999999975432  23333444444554   899999


Q ss_pred             CCCCCCCHHHHHHHHHHHhh
Q psy15351         83 RNPNCKGVQKILPTLQHISD  102 (352)
Q Consensus        83 ~~~~~~gi~~L~~~i~~~~~  102 (352)
                      +++  .|++++++++.+.+.
T Consensus       149 ~~~--~~v~~l~~~l~~~i~  166 (169)
T 3q85_A          149 ALH--HNTRELFEGAVRQIR  166 (169)
T ss_dssp             TTT--BSHHHHHHHHHHHHH
T ss_pred             ccC--CCHHHHHHHHHHHHH
Confidence            999  999999999877654

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=98.37  E-value=3.8e-07  Score=76.22  Aligned_cols=62  Identities=18%  Similarity=0.225  Sum_probs=38.9

Q ss_pred             CcceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecC-CCcEEEEeCCCCC
Q psy15351        166 VYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISE-KPLIYILDTPGIS  232 (352)
Q Consensus       166 ~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~-~~~~~l~DtPGi~  232 (352)
                      ...++|+++|.+|||||||+|+|.+...    .....+..|++.... .+.... ...+.++||||..
T Consensus        10 ~~~~ki~v~G~~~~GKSsli~~l~~~~~----~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~Dt~G~~   72 (181)
T 2efe_B           10 SINAKLVLLGDVGAGKSSLVLRFVKDQF----VEFQESTIGAAFFSQ-TLAVNDATVKFEIWDTAGQE   72 (181)
T ss_dssp             CEEEEEEEECCTTSCHHHHHHHHHHCCC----TTTSCCCSCCSEEEE-EEEETTEEEEEEEEECCCSG
T ss_pred             ccceEEEEECcCCCCHHHHHHHHHcCCC----CCcCCCCceeEEEEE-EEEECCEEEEEEEEeCCCCh
Confidence            3568999999999999999999996321    111122333333322 222222 2268999999954

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=98.37  E-value=2.9e-07  Score=78.70  Aligned_cols=63  Identities=19%  Similarity=0.267  Sum_probs=36.0

Q ss_pred             CcceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecC-CCcEEEEeCCCCCC
Q psy15351        166 VYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISE-KPLIYILDTPGISL  233 (352)
Q Consensus       166 ~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~-~~~~~l~DtPGi~~  233 (352)
                      ...++|+++|.+|||||||+|+|.+..    ....+.+..|++.... .+.... ...+.++||||...
T Consensus        26 ~~~~ki~v~G~~~~GKSsli~~l~~~~----~~~~~~~t~~~~~~~~-~~~~~~~~~~l~i~Dt~G~~~   89 (199)
T 2p5s_A           26 QKAYKIVLAGDAAVGKSSFLMRLCKNE----FRENISATLGVDFQMK-TLIVDGERTVLQLWDTAGQER   89 (199)
T ss_dssp             --CEEEEEESSTTSSHHHHHHHHHHCC----CC----------CEEE-EEEETTEEEEEEEEECTTCTT
T ss_pred             CCCeEEEEECcCCCCHHHHHHHHHhCC----CCccCCCCccceeEEE-EEEECCEEEEEEEEECCCCcc
Confidence            457999999999999999999998632    1233445555544332 222222 12588999999653

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=98.37  E-value=7.5e-07  Score=73.30  Aligned_cols=88  Identities=18%  Similarity=0.063  Sum_probs=56.7

Q ss_pred             HHhhccCEEEEEEcCCCCCCCcC--HHHHHHHh----CCCCEEEEEEcccCCCccc--hHHHHHHHHhhcCCCCcEEEee
Q psy15351         10 KHLKNVDIVIEVHDSRMPFTGRN--HLLQQSVQ----NIRPMVLVLNKRDLINSKH--ESLIEEKVRKEQSHISEVIFTN   81 (352)
Q Consensus        10 ~~i~~aD~vl~VvDar~p~~~~~--~~l~~~l~----~~k~~ilVlNK~Dl~~~~~--~~~~~~~~~~~~~~~~~v~~iS   81 (352)
                      ..+..+|++++|+|+.++.+...  ..+..+..    .+.|+++|+||+|+.+...  .....++....+.   +++.+|
T Consensus        68 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~---~~~~~S  144 (166)
T 3q72_A           68 HCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDC---KFIETS  144 (166)
T ss_dssp             -----CCEEEEEEETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHHHHHHHHHTTC---EEEECB
T ss_pred             hhhhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccccccCHHHHHHHHHHhCC---cEEEec
Confidence            45789999999999987632211  11222222    3689999999999986543  2222333333454   489999


Q ss_pred             cCCCCCCCHHHHHHHHHHHhh
Q psy15351         82 CRNPNCKGVQKILPTLQHISD  102 (352)
Q Consensus        82 a~~~~~~gi~~L~~~i~~~~~  102 (352)
                      |+++  .|++++++++.+.+.
T Consensus       145 a~~~--~gi~~l~~~l~~~~~  163 (166)
T 3q72_A          145 AALH--HNVQALFEGVVRQIR  163 (166)
T ss_dssp             GGGT--BSHHHHHHHHHHHHH
T ss_pred             cCCC--CCHHHHHHHHHHHHH
Confidence            9999  999999999887654

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=98.37  E-value=5.4e-07  Score=76.10  Aligned_cols=59  Identities=22%  Similarity=0.378  Sum_probs=40.4

Q ss_pred             CcceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCCcEEEEeCCCCCC
Q psy15351        166 VYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISL  233 (352)
Q Consensus       166 ~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~~  233 (352)
                      .+.++|+++|.+|||||||+|+|.+.     ....+.++.|.+...   +.. .+..+.++||||...
T Consensus        14 ~~~~~i~v~G~~~~GKssl~~~l~~~-----~~~~~~~t~~~~~~~---~~~-~~~~~~i~Dt~G~~~   72 (187)
T 1zj6_A           14 HQEHKVIIVGLDNAGKTTILYQFSMN-----EVVHTSPTIGSNVEE---IVI-NNTRFLMWDIGGQES   72 (187)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHHTT-----SCEEEECCSCSSCEE---EEE-TTEEEEEEECCC---
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcC-----CCCcCcCCCccceEE---EEE-CCEEEEEEECCCCHh
Confidence            35689999999999999999999962     333455555544332   222 345789999999854

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=98.37  E-value=3.3e-07  Score=77.61  Aligned_cols=62  Identities=23%  Similarity=0.369  Sum_probs=40.9

Q ss_pred             cceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecC-CCcEEEEeCCCCCC
Q psy15351        167 YNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISE-KPLIYILDTPGISL  233 (352)
Q Consensus       167 ~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~-~~~~~l~DtPGi~~  233 (352)
                      +.++|+++|.+|||||||+|+|.+...    .....+..|++.... .+.... ...+.++||||...
T Consensus        14 ~~~~i~v~G~~~~GKssli~~l~~~~~----~~~~~~t~~~~~~~~-~~~~~~~~~~~~i~Dt~G~~~   76 (195)
T 1x3s_A           14 TTLKILIIGESGVGKSSLLLRFTDDTF----DPELAATIGVDFKVK-TISVDGNKAKLAIWDTAGQER   76 (195)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCC----CTTCCCCCSEEEEEE-EEEETTEEEEEEEEEECSSGG
T ss_pred             CceEEEEECCCCCCHHHHHHHHHcCCC----CccCCCccceEEEEE-EEEECCeEEEEEEEeCCCchh
Confidence            468999999999999999999986321    123334445554432 222222 23588999999654

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=98.36  E-value=7.1e-07  Score=74.85  Aligned_cols=87  Identities=11%  Similarity=0.005  Sum_probs=56.8

Q ss_pred             HHhhccCEEEEEEcCCCCCCCcCHHHHHHH----h---CCCCEEEEEEcccCCCccc--hHHHHHHHHhhcCCCCcEEEe
Q psy15351         10 KHLKNVDIVIEVHDSRMPFTGRNHLLQQSV----Q---NIRPMVLVLNKRDLINSKH--ESLIEEKVRKEQSHISEVIFT   80 (352)
Q Consensus        10 ~~i~~aD~vl~VvDar~p~~~~~~~l~~~l----~---~~k~~ilVlNK~Dl~~~~~--~~~~~~~~~~~~~~~~~v~~i   80 (352)
                      ..+..+|++++|+|+.++.+.  ..+..++    .   .+.|+++|+||+|+.+...  .++..++.++.+..   ++.+
T Consensus        76 ~~~~~~d~~i~v~d~~~~~s~--~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~---~~~~  150 (183)
T 2fu5_C           76 AYYRGAMGIMLVYDITNEKSF--DNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIK---FMET  150 (183)
T ss_dssp             TTTTTCSEEEEEEETTCHHHH--HHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHHTCE---EEEC
T ss_pred             HHHhcCCEEEEEEECcCHHHH--HHHHHHHHHHHHhcCCCCCEEEEEECccCCccCcCCHHHHHHHHHHcCCe---EEEE
Confidence            357889999999999875322  1222222    1   3679999999999986432  23444444455654   9999


Q ss_pred             ecCCCCCCCHHHHHHHHHHHhhh
Q psy15351         81 NCRNPNCKGVQKILPTLQHISDN  103 (352)
Q Consensus        81 Sa~~~~~~gi~~L~~~i~~~~~~  103 (352)
                      ||+++  .|+++++++|.+.+..
T Consensus       151 Sa~~~--~~i~~l~~~l~~~i~~  171 (183)
T 2fu5_C          151 SAKAN--INVENAFFTLARDIKA  171 (183)
T ss_dssp             CC-----CCHHHHHHHHHHHHHH
T ss_pred             eCCCC--CCHHHHHHHHHHHHHH
Confidence            99999  9999999998776543

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=98.36  E-value=5.2e-07  Score=76.69  Aligned_cols=59  Identities=19%  Similarity=0.343  Sum_probs=40.7

Q ss_pred             CcceEEEEeCCCCCChHHHHHHHhCCCCCCCCcee--cCCCCCceeEeeeeEEecCCCcEEEEeCCCCCC
Q psy15351        166 VYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVP--VGPKAGVTRSVMSQVKISEKPLIYILDTPGISL  233 (352)
Q Consensus       166 ~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~--~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~~  233 (352)
                      ....+|+++|.+|||||||+|+|.+.     ....  ..++.|.+....    ...+..+.++||||...
T Consensus        15 ~~~~ki~v~G~~~~GKSsl~~~l~~~-----~~~~~~~~~t~~~~~~~~----~~~~~~~~i~Dt~G~~~   75 (199)
T 4bas_A           15 KTKLQVVMCGLDNSGKTTIINQVKPA-----QSSSKHITATVGYNVETF----EKGRVAFTVFDMGGAKK   75 (199)
T ss_dssp             -CEEEEEEECCTTSCHHHHHHHHSCC-----C----CCCCCSSEEEEEE----EETTEEEEEEEECCSGG
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhcC-----CCcccccccccceeEEEE----EeCCEEEEEEECCCCHh
Confidence            46789999999999999999999973     2222  255566444322    23344689999999753

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=98.36  E-value=6.6e-07  Score=76.50  Aligned_cols=61  Identities=25%  Similarity=0.228  Sum_probs=39.5

Q ss_pred             CcceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeee-eEEecCC-CcEEEEeCCCCCC
Q psy15351        166 VYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMS-QVKISEK-PLIYILDTPGISL  233 (352)
Q Consensus       166 ~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~-~~~~~~~-~~~~l~DtPGi~~  233 (352)
                      ...++|+++|.+|||||||+|+|.+.     .  .....++++..... .+...+. -.+.++||||...
T Consensus        12 ~~~~ki~v~G~~~~GKSsli~~l~~~-----~--~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~   74 (206)
T 2bov_A           12 LALHKVIMVGSGGVGKSALTLQFMYD-----E--FVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQED   74 (206)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHS-----C--CCTTCCTTCCEEEEEEEEETTEEEEEEEEECCCTTC
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHhC-----C--CCCCCCCccceEEEEEEEECCEEEEEEEEcCCChhh
Confidence            35689999999999999999999863     1  12233444333222 2222221 1588999999654

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=98.36  E-value=9.6e-07  Score=74.84  Aligned_cols=90  Identities=14%  Similarity=0.018  Sum_probs=62.2

Q ss_pred             HHHHhhccCEEEEEEcCCCCCCCcC--HHHHHHHh---CCCCEEEEEEcccCCCccc--hHHHHHHHHhhcCCCCcEEEe
Q psy15351          8 IEKHLKNVDIVIEVHDSRMPFTGRN--HLLQQSVQ---NIRPMVLVLNKRDLINSKH--ESLIEEKVRKEQSHISEVIFT   80 (352)
Q Consensus         8 ~~~~i~~aD~vl~VvDar~p~~~~~--~~l~~~l~---~~k~~ilVlNK~Dl~~~~~--~~~~~~~~~~~~~~~~~v~~i   80 (352)
                      ....+..+|++|+|+|+.++.+...  ..+..+..   .+.|+++|+||+|+.+...  .....++....+..   ++.+
T Consensus        91 ~~~~~~~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~---~~~~  167 (193)
T 2oil_A           91 TSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLL---FLET  167 (193)
T ss_dssp             HHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCE---EEEE
T ss_pred             hHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCcccccccCHHHHHHHHHHcCCE---EEEE
Confidence            3456789999999999987543221  11222222   3678999999999976432  23444444445554   8999


Q ss_pred             ecCCCCCCCHHHHHHHHHHHhh
Q psy15351         81 NCRNPNCKGVQKILPTLQHISD  102 (352)
Q Consensus        81 Sa~~~~~~gi~~L~~~i~~~~~  102 (352)
                      ||+++  .|+++++++|.+.+.
T Consensus       168 Sa~~~--~gi~~l~~~l~~~i~  187 (193)
T 2oil_A          168 SALDS--TNVELAFETVLKEIF  187 (193)
T ss_dssp             CTTTC--TTHHHHHHHHHHHHH
T ss_pred             eCCCC--CCHHHHHHHHHHHHH
Confidence            99999  999999999876554

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=98.36  E-value=1.1e-06  Score=75.39  Aligned_cols=89  Identities=17%  Similarity=0.089  Sum_probs=61.8

Q ss_pred             HHhhccCEEEEEEcCCCCCCCcC--HHHHHHHh---CCCCEEEEEEcccCCCccc--hHHHHHHHHhhcCCCCcEEEeec
Q psy15351         10 KHLKNVDIVIEVHDSRMPFTGRN--HLLQQSVQ---NIRPMVLVLNKRDLINSKH--ESLIEEKVRKEQSHISEVIFTNC   82 (352)
Q Consensus        10 ~~i~~aD~vl~VvDar~p~~~~~--~~l~~~l~---~~k~~ilVlNK~Dl~~~~~--~~~~~~~~~~~~~~~~~v~~iSa   82 (352)
                      ..+..+|++|+|+|+.++.+...  ..+..+..   .+.|+++|+||+|+.+...  .+...++....+.+   ++.+||
T Consensus        76 ~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~---~~~~Sa  152 (206)
T 2bcg_Y           76 SYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMP---FLETSA  152 (206)
T ss_dssp             GGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCC---EEECCT
T ss_pred             HhccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCe---EEEEeC
Confidence            45788999999999987543211  11111111   3578999999999986432  23334444445665   999999


Q ss_pred             CCCCCCCHHHHHHHHHHHhhh
Q psy15351         83 RNPNCKGVQKILPTLQHISDN  103 (352)
Q Consensus        83 ~~~~~~gi~~L~~~i~~~~~~  103 (352)
                      +++  .|+++++++|.+.+..
T Consensus       153 ~~g--~gi~~l~~~l~~~i~~  171 (206)
T 2bcg_Y          153 LDS--TNVEDAFLTMARQIKE  171 (206)
T ss_dssp             TTC--TTHHHHHHHHHHHHHH
T ss_pred             CCC--CCHHHHHHHHHHHHHH
Confidence            999  9999999999876654

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=98.36  E-value=9.8e-07  Score=74.10  Aligned_cols=91  Identities=13%  Similarity=0.017  Sum_probs=63.2

Q ss_pred             HHHHhhccCEEEEEEcCCCCCCCcC--HHHHHHHh---CCCCEEEEEEcccCCCccc--hHHHHHHHHhhcCCCCcEEEe
Q psy15351          8 IEKHLKNVDIVIEVHDSRMPFTGRN--HLLQQSVQ---NIRPMVLVLNKRDLINSKH--ESLIEEKVRKEQSHISEVIFT   80 (352)
Q Consensus         8 ~~~~i~~aD~vl~VvDar~p~~~~~--~~l~~~l~---~~k~~ilVlNK~Dl~~~~~--~~~~~~~~~~~~~~~~~v~~i   80 (352)
                      ....+..+|++++|+|+.++.+...  ..+..+..   .+.|+++|+||+|+.+...  ..+..++....+..   ++.+
T Consensus        76 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~---~~~~  152 (186)
T 2bme_A           76 TRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENELM---FLET  152 (186)
T ss_dssp             HHTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCE---EEEC
T ss_pred             HHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCE---EEEe
Confidence            4557889999999999987543222  11111111   4689999999999975432  23444555555654   8999


Q ss_pred             ecCCCCCCCHHHHHHHHHHHhhh
Q psy15351         81 NCRNPNCKGVQKILPTLQHISDN  103 (352)
Q Consensus        81 Sa~~~~~~gi~~L~~~i~~~~~~  103 (352)
                      ||+++  .|++++++++.+.+..
T Consensus       153 Sa~~~--~gi~~l~~~l~~~~~~  173 (186)
T 2bme_A          153 SALTG--ENVEEAFVQCARKILN  173 (186)
T ss_dssp             CTTTC--TTHHHHHHHHHHHHHH
T ss_pred             cCCCC--CCHHHHHHHHHHHHHH
Confidence            99999  9999999998766543

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=98.36  E-value=1.1e-06  Score=75.21  Aligned_cols=90  Identities=10%  Similarity=0.011  Sum_probs=62.0

Q ss_pred             HHHHhhccCEEEEEEcCCCCCCCcC-HHHHHHHh----CCCCEEEEEEcccCCCccc--hHHHHHHHHhhcCCCCcEEEe
Q psy15351          8 IEKHLKNVDIVIEVHDSRMPFTGRN-HLLQQSVQ----NIRPMVLVLNKRDLINSKH--ESLIEEKVRKEQSHISEVIFT   80 (352)
Q Consensus         8 ~~~~i~~aD~vl~VvDar~p~~~~~-~~l~~~l~----~~k~~ilVlNK~Dl~~~~~--~~~~~~~~~~~~~~~~~v~~i   80 (352)
                      ....+..+|++|+|+|+.++.+... ..+...+.    .+.|+++|+||+|+.+...  .....++....+..   ++.+
T Consensus        74 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~---~~~~  150 (203)
T 1zbd_A           74 TTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFE---FFEA  150 (203)
T ss_dssp             HHTTGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCTTSCCSCHHHHHHHHHHHTCE---EEEC
T ss_pred             HHHhhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCcccccCHHHHHHHHHHCCCe---EEEE
Confidence            4557789999999999987532211 11111121    3689999999999986432  23333444444654   9999


Q ss_pred             ecCCCCCCCHHHHHHHHHHHhh
Q psy15351         81 NCRNPNCKGVQKILPTLQHISD  102 (352)
Q Consensus        81 Sa~~~~~~gi~~L~~~i~~~~~  102 (352)
                      ||+++  .|+++++++|.+.+.
T Consensus       151 Sa~~~--~gi~~l~~~l~~~i~  170 (203)
T 1zbd_A          151 SAKDN--INVKQTFERLVDVIC  170 (203)
T ss_dssp             BTTTT--BSSHHHHHHHHHHHH
T ss_pred             ECCCC--CCHHHHHHHHHHHHH
Confidence            99999  999999999876654

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=98.35  E-value=1.4e-06  Score=73.27  Aligned_cols=90  Identities=21%  Similarity=0.182  Sum_probs=62.2

Q ss_pred             HHHhhccCEEEEEEcCCCCCCCcC--HHHHHHHh----CCCCEEEEEEcccCCCccchH-HHHHHHHhhcCCCCcEEEee
Q psy15351          9 EKHLKNVDIVIEVHDSRMPFTGRN--HLLQQSVQ----NIRPMVLVLNKRDLINSKHES-LIEEKVRKEQSHISEVIFTN   81 (352)
Q Consensus         9 ~~~i~~aD~vl~VvDar~p~~~~~--~~l~~~l~----~~k~~ilVlNK~Dl~~~~~~~-~~~~~~~~~~~~~~~v~~iS   81 (352)
                      ...+..+|++++|+|+.++.+...  ..+..+..    .+.|+++|+||+|+.+..... ...++....+.+   ++.+|
T Consensus        70 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~---~~~~S  146 (189)
T 4dsu_A           70 DQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRTVDTKQAQDLARSYGIP---FIETS  146 (189)
T ss_dssp             HHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSSCSSCHHHHHHHHHHHTCC---EEECC
T ss_pred             HHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcccccCHHHHHHHHHHcCCe---EEEEe
Confidence            345778999999999987532211  11112221    368999999999998654322 333333444665   99999


Q ss_pred             cCCCCCCCHHHHHHHHHHHhhh
Q psy15351         82 CRNPNCKGVQKILPTLQHISDN  103 (352)
Q Consensus        82 a~~~~~~gi~~L~~~i~~~~~~  103 (352)
                      |+++  .|++++++++.+.+..
T Consensus       147 a~~g--~gi~~l~~~l~~~~~~  166 (189)
T 4dsu_A          147 AKTR--QGVDDAFYTLVREIRK  166 (189)
T ss_dssp             TTTC--TTHHHHHHHHHHHHHH
T ss_pred             CCCC--CCHHHHHHHHHHHHHH
Confidence            9999  9999999999876654

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=98.35  E-value=1.3e-06  Score=75.02  Aligned_cols=90  Identities=19%  Similarity=0.126  Sum_probs=61.8

Q ss_pred             HHHhhccCEEEEEEcCCCCCCCcC--HHHHHHHh---CCCCEEEEEEcccCCCccc-hHHHHHHHHhhcCCCCcEEEeec
Q psy15351          9 EKHLKNVDIVIEVHDSRMPFTGRN--HLLQQSVQ---NIRPMVLVLNKRDLINSKH-ESLIEEKVRKEQSHISEVIFTNC   82 (352)
Q Consensus         9 ~~~i~~aD~vl~VvDar~p~~~~~--~~l~~~l~---~~k~~ilVlNK~Dl~~~~~-~~~~~~~~~~~~~~~~~v~~iSa   82 (352)
                      ...+..+|++++|+|+.++.+...  ..+..+..   .+.|+++|+||+|+..... .....++....+.+   ++.+||
T Consensus        87 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~---~~~~Sa  163 (213)
T 3cph_A           87 TAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEALAKELGIP---FIESSA  163 (213)
T ss_dssp             HHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTCSSCCSCHHHHHHHHHHHTCC---EEECBT
T ss_pred             HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcccccCHHHHHHHHHHcCCE---EEEEeC
Confidence            456789999999999987543211  11112211   3689999999999954332 23333344445665   999999


Q ss_pred             CCCCCCCHHHHHHHHHHHhhh
Q psy15351         83 RNPNCKGVQKILPTLQHISDN  103 (352)
Q Consensus        83 ~~~~~~gi~~L~~~i~~~~~~  103 (352)
                      +++  .|+++++++|.+.+.+
T Consensus       164 ~~~--~gi~~l~~~l~~~~~~  182 (213)
T 3cph_A          164 KND--DNVNEIFFTLAKLIQE  182 (213)
T ss_dssp             TTT--BSSHHHHHHHHHHHHH
T ss_pred             CCC--CCHHHHHHHHHHHHHH
Confidence            999  9999999998876654

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=98.34  E-value=8.7e-07  Score=73.08  Aligned_cols=60  Identities=23%  Similarity=0.279  Sum_probs=36.7

Q ss_pred             ceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecC-CCcEEEEeCCCCCC
Q psy15351        168 NTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISE-KPLIYILDTPGISL  233 (352)
Q Consensus       168 ~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~-~~~~~l~DtPGi~~  233 (352)
                      .++|+++|.+|||||||+|+|.+....   .......+.+++..   +.... ...+.++||||...
T Consensus         3 ~~~i~v~G~~~~GKssli~~l~~~~~~---~~~~~t~~~~~~~~---~~~~~~~~~~~~~Dt~G~~~   63 (172)
T 2erx_A            3 DYRVAVFGAGGVGKSSLVLRFVKGTFR---ESYIPTVEDTYRQV---ISCDKSICTLQITDTTGSHQ   63 (172)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHTCCCC---SSCCCCSCEEEEEE---EEETTEEEEEEEEECCSCSS
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCCCC---CCCCCCccccEEEE---EEECCEEEEEEEEECCCchh
Confidence            578999999999999999999963211   01111122222221   21211 12578999999754

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=98.34  E-value=3.9e-07  Score=76.40  Aligned_cols=59  Identities=19%  Similarity=0.377  Sum_probs=40.7

Q ss_pred             CcceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCCcEEEEeCCCCCC
Q psy15351        166 VYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISL  233 (352)
Q Consensus       166 ~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~~  233 (352)
                      .+.++|+++|.+|||||||+|++.+     .......++.|.+...   +.. .+..+.++||||...
T Consensus        16 ~~~~~i~v~G~~~~GKssli~~l~~-----~~~~~~~~t~~~~~~~---~~~-~~~~~~i~Dt~G~~~   74 (183)
T 1moz_A           16 NKELRILILGLDGAGKTTILYRLQI-----GEVVTTKPTIGFNVET---LSY-KNLKLNVWDLGGQTS   74 (183)
T ss_dssp             SSCEEEEEEEETTSSHHHHHHHTCC-----SEEEEECSSTTCCEEE---EEE-TTEEEEEEEEC----
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhc-----CCcCccCCcCccceEE---EEE-CCEEEEEEECCCCHh
Confidence            3579999999999999999999986     3345566666655432   222 345689999999865

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=98.34  E-value=1e-06  Score=73.45  Aligned_cols=90  Identities=17%  Similarity=0.103  Sum_probs=61.7

Q ss_pred             HHHhhccCEEEEEEcCCCCCCCcC--HHHHHHHh----CCCCEEEEEEcccCCCccc--hHHHHHHHHhhcCCCCcEEEe
Q psy15351          9 EKHLKNVDIVIEVHDSRMPFTGRN--HLLQQSVQ----NIRPMVLVLNKRDLINSKH--ESLIEEKVRKEQSHISEVIFT   80 (352)
Q Consensus         9 ~~~i~~aD~vl~VvDar~p~~~~~--~~l~~~l~----~~k~~ilVlNK~Dl~~~~~--~~~~~~~~~~~~~~~~~v~~i   80 (352)
                      ...+..+|++++|+|+.++.+...  ..+..+++    .+.|+++|+||+|+.+...  .....++....+..   ++.+
T Consensus        75 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~---~~~~  151 (181)
T 2fn4_A           75 EQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVA---YFEA  151 (181)
T ss_dssp             HHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCE---EEEC
T ss_pred             HHHHhhCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCe---EEEe
Confidence            345788999999999987532211  12222222    4789999999999976433  23333333344554   8999


Q ss_pred             ecCCCCCCCHHHHHHHHHHHhhh
Q psy15351         81 NCRNPNCKGVQKILPTLQHISDN  103 (352)
Q Consensus        81 Sa~~~~~~gi~~L~~~i~~~~~~  103 (352)
                      ||+++  .|+++++++|.+.+..
T Consensus       152 Sa~~~--~gv~~l~~~l~~~~~~  172 (181)
T 2fn4_A          152 SAKLR--LNVDEAFEQLVRAVRK  172 (181)
T ss_dssp             BTTTT--BSHHHHHHHHHHHHHH
T ss_pred             cCCCC--CCHHHHHHHHHHHHHH
Confidence            99999  9999999999876654

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=98.34  E-value=6.5e-07  Score=73.88  Aligned_cols=85  Identities=18%  Similarity=0.113  Sum_probs=59.9

Q ss_pred             HhhccCEEEEEEcCCCCCCCcCHHHHHH---Hh----CCCCEEEEEEcccCCCccc--hHHHHHHHHhhcCCCCcEEEee
Q psy15351         11 HLKNVDIVIEVHDSRMPFTGRNHLLQQS---VQ----NIRPMVLVLNKRDLINSKH--ESLIEEKVRKEQSHISEVIFTN   81 (352)
Q Consensus        11 ~i~~aD~vl~VvDar~p~~~~~~~l~~~---l~----~~k~~ilVlNK~Dl~~~~~--~~~~~~~~~~~~~~~~~v~~iS   81 (352)
                      .+..+|++++|+|+.++.+..  .+..+   +.    .+.|+++|+||+|+.++..  .++..++.+..+..   ++.+|
T Consensus        75 ~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~---~~~~S  149 (170)
T 1z08_A           75 YYRDSNGAILVYDITDEDSFQ--KVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAK---HYHTS  149 (170)
T ss_dssp             SSTTCSEEEEEEETTCHHHHH--HHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCE---EEEEB
T ss_pred             HhccCCEEEEEEECcCHHHHH--HHHHHHHHHHHhcCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCe---EEEec
Confidence            567899999999998753221  12222   11    4689999999999976432  23444444445554   89999


Q ss_pred             cCCCCCCCHHHHHHHHHHHhh
Q psy15351         82 CRNPNCKGVQKILPTLQHISD  102 (352)
Q Consensus        82 a~~~~~~gi~~L~~~i~~~~~  102 (352)
                      |+++  .|+++++++|.+.+.
T Consensus       150 a~~~--~gi~~l~~~l~~~~~  168 (170)
T 1z08_A          150 AKQN--KGIEELFLDLCKRMI  168 (170)
T ss_dssp             TTTT--BSHHHHHHHHHHHHH
T ss_pred             CCCC--CCHHHHHHHHHHHHh
Confidence            9999  999999999876553

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=98.34  E-value=7.3e-07  Score=76.33  Aligned_cols=62  Identities=21%  Similarity=0.284  Sum_probs=39.0

Q ss_pred             CcceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCC--CcEEEEeCCCCCC
Q psy15351        166 VYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEK--PLIYILDTPGISL  233 (352)
Q Consensus       166 ~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~--~~~~l~DtPGi~~  233 (352)
                      ...++|+++|.+|||||||+|+|.+..      ......|.++.+.........+  ..+.++||||...
T Consensus         6 ~~~~ki~v~G~~~~GKSsli~~l~~~~------~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~   69 (207)
T 1vg8_A            6 KVLLKVIILGDSGVGKTSLMNQYVNKK------FSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQER   69 (207)
T ss_dssp             -CEEEEEEECCTTSSHHHHHHHHHHSC------CCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGG
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHcCC------CCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHH
Confidence            356899999999999999999998632      1122233333333222222222  2589999999643

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=98.34  E-value=4.3e-07  Score=77.00  Aligned_cols=59  Identities=19%  Similarity=0.361  Sum_probs=36.5

Q ss_pred             CcceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCCcEEEEeCCCCCCC
Q psy15351        166 VYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLP  234 (352)
Q Consensus       166 ~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~~~  234 (352)
                      ...++|+++|.+|||||||+|+|.+...   .....+..|++|.+.       ....+.++||||....
T Consensus        46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~---~~~~~~~~~~~~~~~-------~~~~~~l~Dt~G~~~~  104 (193)
T 2ged_A           46 SYQPSIIIAGPQNSGKTSLLTLLTTDSV---RPTVVSQEPLSAADY-------DGSGVTLVDFPGHVKL  104 (193)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHSSC---C------------CC-------CCTTCSEEEETTCCBS
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCCC---CcccccCCCceeeee-------cCCeEEEEECCCCchH
Confidence            3568999999999999999999997321   112223344444332       2346899999998754

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=98.34  E-value=1.3e-06  Score=75.18  Aligned_cols=91  Identities=21%  Similarity=0.148  Sum_probs=62.4

Q ss_pred             HHHHhhccCEEEEEEcCCCCCCCcC--HHHHHHHh---CCCCEEEEEEcccCCCccc--hHHHHHHHHhhcCCCCcEEEe
Q psy15351          8 IEKHLKNVDIVIEVHDSRMPFTGRN--HLLQQSVQ---NIRPMVLVLNKRDLINSKH--ESLIEEKVRKEQSHISEVIFT   80 (352)
Q Consensus         8 ~~~~i~~aD~vl~VvDar~p~~~~~--~~l~~~l~---~~k~~ilVlNK~Dl~~~~~--~~~~~~~~~~~~~~~~~v~~i   80 (352)
                      ....+..+|++++|+|++++.+...  ..+..+..   .+.|+++|+||+|+.+...  ..+..++....+..   ++.+
T Consensus        92 ~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~---~~~~  168 (201)
T 2ew1_A           92 TQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMY---YLET  168 (201)
T ss_dssp             HGGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCC---EEEC
T ss_pred             HHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCE---EEEE
Confidence            4456789999999999987543221  11112211   3678999999999975432  23333444445665   8999


Q ss_pred             ecCCCCCCCHHHHHHHHHHHhhh
Q psy15351         81 NCRNPNCKGVQKILPTLQHISDN  103 (352)
Q Consensus        81 Sa~~~~~~gi~~L~~~i~~~~~~  103 (352)
                      ||+++  .|+++++++|.+.+..
T Consensus       169 Sa~~g--~gv~~l~~~l~~~i~~  189 (201)
T 2ew1_A          169 SAKES--DNVEKLFLDLACRLIS  189 (201)
T ss_dssp             CTTTC--TTHHHHHHHHHHHHHH
T ss_pred             eCCCC--CCHHHHHHHHHHHHHH
Confidence            99999  9999999998766543

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=98.34  E-value=1.3e-06  Score=74.16  Aligned_cols=88  Identities=10%  Similarity=0.051  Sum_probs=60.1

Q ss_pred             HHhhccCEEEEEEcCCCCCCCcCH--HHHHHHh---CCCCEEEEEEcccCCCcc--------------chHHHHHHHHhh
Q psy15351         10 KHLKNVDIVIEVHDSRMPFTGRNH--LLQQSVQ---NIRPMVLVLNKRDLINSK--------------HESLIEEKVRKE   70 (352)
Q Consensus        10 ~~i~~aD~vl~VvDar~p~~~~~~--~l~~~l~---~~k~~ilVlNK~Dl~~~~--------------~~~~~~~~~~~~   70 (352)
                      ..+..+|++++|+|+.++.+....  .+...+.   .+.|+++|+||+|+.+..              ..++..++.+..
T Consensus        85 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  164 (194)
T 2atx_A           85 LSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEI  164 (194)
T ss_dssp             GGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHH
T ss_pred             HhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHHc
Confidence            457889999999999876332111  1222222   378999999999998642              123333444444


Q ss_pred             cCCCCcEEEeecCCCCCCCHHHHHHHHHHHh
Q psy15351         71 QSHISEVIFTNCRNPNCKGVQKILPTLQHIS  101 (352)
Q Consensus        71 ~~~~~~v~~iSa~~~~~~gi~~L~~~i~~~~  101 (352)
                      +..  +++.+||+++  .|+++++++|.+.+
T Consensus       165 ~~~--~~~~~Sa~~g--~gi~~l~~~l~~~i  191 (194)
T 2atx_A          165 GAC--CYVECSALTQ--KGLKTVFDEAIIAI  191 (194)
T ss_dssp             TCS--CEEECCTTTC--TTHHHHHHHHHHHH
T ss_pred             CCc--EEEEeeCCCC--CCHHHHHHHHHHHH
Confidence            542  4899999999  99999999887644

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=98.34  E-value=6.9e-07  Score=73.41  Aligned_cols=60  Identities=20%  Similarity=0.180  Sum_probs=36.9

Q ss_pred             ceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCC--CcEEEEeCCCCCCC
Q psy15351        168 NTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEK--PLIYILDTPGISLP  234 (352)
Q Consensus       168 ~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~--~~~~l~DtPGi~~~  234 (352)
                      .++|+++|.+|||||||+|++.+..     .  ....+.++...........+  ..+.++||||....
T Consensus         3 ~~ki~v~G~~~~GKssli~~l~~~~-----~--~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~   64 (167)
T 1c1y_A            3 EYKLVVLGSGGVGKSALTVQFVQGI-----F--VEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQF   64 (167)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHCC-----C--CCSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSS
T ss_pred             eeEEEEECCCCCCHHHHHHHHHcCC-----C--CCCCCCCccceEEEEEEECCEEEEEEEEECCChHHH
Confidence            4789999999999999999998631     1  11122222222111111222  25789999997643

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=98.33  E-value=7.9e-07  Score=74.42  Aligned_cols=61  Identities=18%  Similarity=0.197  Sum_probs=39.4

Q ss_pred             cceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCC--cEEEEeCCCCCCC
Q psy15351        167 YNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKP--LIYILDTPGISLP  234 (352)
Q Consensus       167 ~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~--~~~l~DtPGi~~~  234 (352)
                      +.++|+++|.+|||||||+|++.+.    .......+..+.+.   .......+.  .+.++||||....
T Consensus         5 ~~~ki~~~G~~~~GKSsli~~l~~~----~~~~~~~~t~~~~~---~~~~~~~~~~~~~~l~Dt~G~~~~   67 (181)
T 3t5g_A            5 KSRKIAILGYRSVGKSSLTIQFVEG----QFVDSYDPTIENTF---TKLITVNGQEYHLQLVDTAGQDEY   67 (181)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHS----SCCSCCCTTCCEEE---EEEEEETTEEEEEEEEECCCCCTT
T ss_pred             ceEEEEEECcCCCCHHHHHHHHHcC----CCCCCCCCCccccE---EEEEEECCEEEEEEEEeCCCchhh
Confidence            4689999999999999999999952    22222333334333   222222232  4689999997653

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=98.33  E-value=5.3e-07  Score=76.63  Aligned_cols=88  Identities=17%  Similarity=0.124  Sum_probs=59.5

Q ss_pred             HHhhccCEEEEEEcCCCCCCCcC--HHHHHHHh----CCCCEEEEEEcccCCCccchHHHHHHHHhhc---------CCC
Q psy15351         10 KHLKNVDIVIEVHDSRMPFTGRN--HLLQQSVQ----NIRPMVLVLNKRDLINSKHESLIEEKVRKEQ---------SHI   74 (352)
Q Consensus        10 ~~i~~aD~vl~VvDar~p~~~~~--~~l~~~l~----~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~---------~~~   74 (352)
                      ..+..+|++++|+|++++.+...  ..+..+++    .+.|+++|+||+|+......+++.+.+....         ...
T Consensus        86 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (190)
T 1m2o_B           86 DYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAELRSALGLLNTTGSQRIEGQRP  165 (190)
T ss_dssp             GGCTTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTCSSCCC---CCSSCC
T ss_pred             HHHhcCCEEEEEEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcCCCCHHHHHHHhCCccccccccccccce
Confidence            45689999999999987643211  22333332    4689999999999986443445544442211         011


Q ss_pred             CcEEEeecCCCCCCCHHHHHHHHHH
Q psy15351         75 SEVIFTNCRNPNCKGVQKILPTLQH   99 (352)
Q Consensus        75 ~~v~~iSa~~~~~~gi~~L~~~i~~   99 (352)
                      .+++.+||+++  .|+++++++|.+
T Consensus       166 ~~~~~~Sa~~g--~gi~~l~~~l~~  188 (190)
T 1m2o_B          166 VEVFMCSVVMR--NGYLEAFQWLSQ  188 (190)
T ss_dssp             EEEEECBTTTT--BSHHHHHHHHHT
T ss_pred             EEEEEeECCcC--CCHHHHHHHHHh
Confidence            24889999999  999999998864

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=98.33  E-value=1e-06  Score=75.38  Aligned_cols=90  Identities=13%  Similarity=0.012  Sum_probs=62.5

Q ss_pred             HHHhhccCEEEEEEcCCCCCCCcC--HHHHHHHh---CCCCEEEEEEcccCCCccc--hHHHHHHHHhhcCCCCcEEEee
Q psy15351          9 EKHLKNVDIVIEVHDSRMPFTGRN--HLLQQSVQ---NIRPMVLVLNKRDLINSKH--ESLIEEKVRKEQSHISEVIFTN   81 (352)
Q Consensus         9 ~~~i~~aD~vl~VvDar~p~~~~~--~~l~~~l~---~~k~~ilVlNK~Dl~~~~~--~~~~~~~~~~~~~~~~~v~~iS   81 (352)
                      ...+..+|++|+|+|+.++.+...  ..+..+..   .+.|+++|+||+|+.+...  ..+..++....+..   ++.+|
T Consensus        92 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~---~~~~S  168 (200)
T 2o52_A           92 RSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELM---FLETS  168 (200)
T ss_dssp             HHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCE---EEEEC
T ss_pred             HHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCE---EEEEe
Confidence            356789999999999987543222  11112211   4689999999999975432  23444555555654   89999


Q ss_pred             cCCCCCCCHHHHHHHHHHHhhh
Q psy15351         82 CRNPNCKGVQKILPTLQHISDN  103 (352)
Q Consensus        82 a~~~~~~gi~~L~~~i~~~~~~  103 (352)
                      |+++  .|+++++++|.+.+..
T Consensus       169 A~~g--~gi~~l~~~l~~~i~~  188 (200)
T 2o52_A          169 ALTG--ENVEEAFLKCARTILN  188 (200)
T ss_dssp             TTTC--TTHHHHHHHHHHHHHH
T ss_pred             CCCC--CCHHHHHHHHHHHHHH
Confidence            9999  9999999998766543

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=98.33  E-value=4.6e-07  Score=77.06  Aligned_cols=62  Identities=23%  Similarity=0.373  Sum_probs=37.4

Q ss_pred             CcceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCC-CcEEEEeCCCCC
Q psy15351        166 VYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEK-PLIYILDTPGIS  232 (352)
Q Consensus       166 ~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~-~~~~l~DtPGi~  232 (352)
                      ...++|+++|.+|||||||+|+|.+..    ......+..|.+.... .+...+. -.+.++||||..
T Consensus        24 ~~~~ki~vvG~~~~GKSsLi~~l~~~~----~~~~~~~t~~~~~~~~-~~~~~~~~~~l~l~Dt~G~~   86 (192)
T 2il1_A           24 DFKLQVIIIGSRGVGKTSLMERFTDDT----FCEACKSTVGVDFKIK-TVELRGKKIRLQIWDTAGQE   86 (192)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHCC------------CCTTEEEEEE-EEEETTEEEEEEEEEECCSG
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhcCC----CCcCCCCccceeEEEE-EEEECCeEEEEEEEeCCCcH
Confidence            456899999999999999999998631    1112233334333221 2222221 258899999954

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=98.33  E-value=4.7e-07  Score=77.55  Aligned_cols=61  Identities=20%  Similarity=0.279  Sum_probs=35.3

Q ss_pred             CcceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeee-eEEecCC-CcEEEEeCCCCC
Q psy15351        166 VYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMS-QVKISEK-PLIYILDTPGIS  232 (352)
Q Consensus       166 ~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~-~~~~~~~-~~~~l~DtPGi~  232 (352)
                      ...++|+++|.+|||||||+|+|.+..      ......|.++.+... .+...+. ..+.++||||..
T Consensus        23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~------~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~   85 (200)
T 2o52_A           23 DFLFKFLVIGSAGTGKSCLLHQFIENK------FKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQE   85 (200)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHC------------------CCEEEEEEEETTEEEEEEEECCTTHH
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHhCC------CCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcH
Confidence            457999999999999999999999631      111222332222211 2222211 268999999953

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}

Probab=98.33  E-value=8.4e-07  Score=79.35  Aligned_cols=83  Identities=18%  Similarity=0.093  Sum_probs=56.6

Q ss_pred             ccCEEEEEEcCCCC--CCCcC--HHHHHHHh----CCCCEEEEEEcccCCCccchHHHHHHHHhh-cCCCCcEEEeecCC
Q psy15351         14 NVDIVIEVHDSRMP--FTGRN--HLLQQSVQ----NIRPMVLVLNKRDLINSKHESLIEEKVRKE-QSHISEVIFTNCRN   84 (352)
Q Consensus        14 ~aD~vl~VvDar~p--~~~~~--~~l~~~l~----~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~-~~~~~~v~~iSa~~   84 (352)
                      ++|++|+|+|++++  .+...  ..+..+.+    .+.|+++|+||+|+.+...+++..++.... +..   ++.+||++
T Consensus       162 ~ad~vilV~D~t~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~---~~e~SAk~  238 (255)
T 3c5h_A          162 LVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYIRDAHTFALSKKNLQ---VVETSARS  238 (255)
T ss_dssp             ECCEEEEEEECBC----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHHHHHHHHHHHTSSSCC---EEECBTTT
T ss_pred             cCCEEEEEEECCCCchhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHHHHHHHHHHHhcCCCe---EEEEECCC
Confidence            69999999999876  32211  11222211    468999999999997654444444444332 444   89999999


Q ss_pred             CCCCCHHHHHHHHHHHh
Q psy15351         85 PNCKGVQKILPTLQHIS  101 (352)
Q Consensus        85 ~~~~gi~~L~~~i~~~~  101 (352)
                      +  .|+++++++|.+.+
T Consensus       239 g--~gv~elf~~l~~~l  253 (255)
T 3c5h_A          239 N--VNVDLAFSTLVQLI  253 (255)
T ss_dssp             T--BSHHHHHHHHHHHH
T ss_pred             C--CCHHHHHHHHHHHh
Confidence            9  99999999987654

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...

Probab=98.33  E-value=4.4e-07  Score=78.91  Aligned_cols=90  Identities=18%  Similarity=0.061  Sum_probs=63.5

Q ss_pred             HHhhccCEEEEEEcCCCCCCCcC--HHHHHHHh--CCCCEEEEEEcccCCCccchHHHHHHHHhhcCCCCcEEEeecCCC
Q psy15351         10 KHLKNVDIVIEVHDSRMPFTGRN--HLLQQSVQ--NIRPMVLVLNKRDLINSKHESLIEEKVRKEQSHISEVIFTNCRNP   85 (352)
Q Consensus        10 ~~i~~aD~vl~VvDar~p~~~~~--~~l~~~l~--~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~v~~iSa~~~   85 (352)
                      ..+..+|++++|+|+.++.+...  ..+..+.+  .+.|+++|+||+|+.+........++.+..+..   ++.+||+++
T Consensus        83 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~---~~~~Sa~~~  159 (221)
T 3gj0_A           83 GYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQ---YYDISAKSN  159 (221)
T ss_dssp             HHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSTTCCEEEEEECTTSSSCSSCGGGCCHHHHHTCE---EEECBGGGT
T ss_pred             HHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCccccccccHHHHHHHHHcCCE---EEEEeCCCC
Confidence            45678999999999987543222  11112222  478999999999998654433333344445554   999999999


Q ss_pred             CCCCHHHHHHHHHHHhhhc
Q psy15351         86 NCKGVQKILPTLQHISDNM  104 (352)
Q Consensus        86 ~~~gi~~L~~~i~~~~~~~  104 (352)
                        .|+++++++|.+.+...
T Consensus       160 --~gi~~l~~~l~~~l~~~  176 (221)
T 3gj0_A          160 --YNFEKPFLWLARKLIGD  176 (221)
T ss_dssp             --BTTTHHHHHHHHHHHTC
T ss_pred             --CCHHHHHHHHHHHHHhC
Confidence              99999999998776543

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=98.33  E-value=5.8e-07  Score=77.31  Aligned_cols=87  Identities=14%  Similarity=0.126  Sum_probs=59.5

Q ss_pred             HHhhccCEEEEEEcCCCCCCCcCH--HHHHHHh---CCCCEEEEEEcccCCCccch--------------HHHHHHHHhh
Q psy15351         10 KHLKNVDIVIEVHDSRMPFTGRNH--LLQQSVQ---NIRPMVLVLNKRDLINSKHE--------------SLIEEKVRKE   70 (352)
Q Consensus        10 ~~i~~aD~vl~VvDar~p~~~~~~--~l~~~l~---~~k~~ilVlNK~Dl~~~~~~--------------~~~~~~~~~~   70 (352)
                      ..+..+|++++|+|+.++.+..+.  .+...+.   .+.|+++|+||+|+.+....              .+..++.+..
T Consensus        97 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  176 (204)
T 4gzl_A           97 LSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEI  176 (204)
T ss_dssp             GGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHT
T ss_pred             HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhc
Confidence            367899999999999876433221  2222232   37899999999999765421              2222333333


Q ss_pred             cCCCCcEEEeecCCCCCCCHHHHHHHHHHH
Q psy15351         71 QSHISEVIFTNCRNPNCKGVQKILPTLQHI  100 (352)
Q Consensus        71 ~~~~~~v~~iSa~~~~~~gi~~L~~~i~~~  100 (352)
                      +..  +++.+||+++  .|++++++++.+.
T Consensus       177 ~~~--~~~~~SA~~g--~gi~~l~~~l~~~  202 (204)
T 4gzl_A          177 GAV--KYLECSALTQ--RGLKTVFDEAIRA  202 (204)
T ss_dssp             TCS--EEEECCTTTC--TTHHHHHHHHHHT
T ss_pred             CCc--EEEEeeCCCC--CCHHHHHHHHHHH
Confidence            332  5899999999  9999999988753

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=98.33  E-value=1.3e-06  Score=74.59  Aligned_cols=90  Identities=16%  Similarity=0.119  Sum_probs=59.7

Q ss_pred             HHHHhhccCEEEEEEcCCCCCCCcC-HHHHHHHh----CCCCEEEEEEcccCCCc------c-c-hHHHHHHHHhhcCCC
Q psy15351          8 IEKHLKNVDIVIEVHDSRMPFTGRN-HLLQQSVQ----NIRPMVLVLNKRDLINS------K-H-ESLIEEKVRKEQSHI   74 (352)
Q Consensus         8 ~~~~i~~aD~vl~VvDar~p~~~~~-~~l~~~l~----~~k~~ilVlNK~Dl~~~------~-~-~~~~~~~~~~~~~~~   74 (352)
                      ....+..+|++|+|+|+.++.+..+ ..+...+.    .+.|+++|+||+|+.+.      . . .....++....+.. 
T Consensus        94 ~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~~~~-  172 (199)
T 2p5s_A           94 AKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGAL-  172 (199)
T ss_dssp             HHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHHTCE-
T ss_pred             HHHHHhhCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccccccccCHHHHHHHHHHcCCe-
Confidence            4556789999999999987643322 11112222    36899999999999631      1 1 12223333344554 


Q ss_pred             CcEEEeecCCCCCCCHHHHHHHHHHHhh
Q psy15351         75 SEVIFTNCRNPNCKGVQKILPTLQHISD  102 (352)
Q Consensus        75 ~~v~~iSa~~~~~~gi~~L~~~i~~~~~  102 (352)
                        ++.+||+++  .|+++++++|.+.+.
T Consensus       173 --~~~~SA~~g--~gv~el~~~l~~~i~  196 (199)
T 2p5s_A          173 --FCETSAKDG--SNIVEAVLHLAREVK  196 (199)
T ss_dssp             --EEECCTTTC--TTHHHHHHHHHHHHT
T ss_pred             --EEEeeCCCC--CCHHHHHHHHHHHHH
Confidence              899999999  999999999876553

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=98.32  E-value=6.8e-07  Score=75.95  Aligned_cols=58  Identities=17%  Similarity=0.296  Sum_probs=40.7

Q ss_pred             cceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCCcEEEEeCCCCCC
Q psy15351        167 YNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISL  233 (352)
Q Consensus       167 ~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~~  233 (352)
                      +.++|+++|.+|||||||+|++.+.     ....+.++.+.+...   +.. ++..+.++||||...
T Consensus        22 ~~~ki~~vG~~~vGKSsli~~l~~~-----~~~~~~~t~~~~~~~---~~~-~~~~~~i~Dt~G~~~   79 (190)
T 1m2o_B           22 KHGKLLFLGLDNAGKTTLLHMLKND-----RLATLQPTWHPTSEE---LAI-GNIKFTTFDLGGHIQ   79 (190)
T ss_dssp             --CEEEEEESTTSSHHHHHHHHHHS-----CCCCCCCCCSCEEEE---EEE-TTEEEEEEECCCSGG
T ss_pred             CccEEEEECCCCCCHHHHHHHHhcC-----CCCccccCCCCCeEE---EEE-CCEEEEEEECCCCHH
Confidence            4579999999999999999999973     333445555655332   222 345789999999754

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=98.32  E-value=1.6e-06  Score=71.92  Aligned_cols=89  Identities=16%  Similarity=0.034  Sum_probs=59.6

Q ss_pred             HHhhccCEEEEEEcCCCCCCCcC-HHHH-HHHh----CCCCEEEEEEcccCCCccc--hHHHHHHHHhhcCCCCcEEEee
Q psy15351         10 KHLKNVDIVIEVHDSRMPFTGRN-HLLQ-QSVQ----NIRPMVLVLNKRDLINSKH--ESLIEEKVRKEQSHISEVIFTN   81 (352)
Q Consensus        10 ~~i~~aD~vl~VvDar~p~~~~~-~~l~-~~l~----~~k~~ilVlNK~Dl~~~~~--~~~~~~~~~~~~~~~~~v~~iS   81 (352)
                      ..+..+|++++|+|+.++.+... ..+. .+..    .+.|+++|+||+|+.+...  ..+...+....+..   ++.+|
T Consensus        73 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~---~~~~S  149 (175)
T 2nzj_A           73 SCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRACAVVFDCK---FIETS  149 (175)
T ss_dssp             HTTTSCSEEEEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHHTSE---EEECB
T ss_pred             hhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccccccCHHHHHHHHHHcCCe---EEEEe
Confidence            45678999999999987532211 1111 2222    2789999999999986532  22333333344554   89999


Q ss_pred             cCCCCCCCHHHHHHHHHHHhhh
Q psy15351         82 CRNPNCKGVQKILPTLQHISDN  103 (352)
Q Consensus        82 a~~~~~~gi~~L~~~i~~~~~~  103 (352)
                      |+++  .|+++++++|.+.+..
T Consensus       150 a~~g--~gi~~l~~~l~~~~~~  169 (175)
T 2nzj_A          150 ATLQ--HNVAELFEGVVRQLRL  169 (175)
T ss_dssp             TTTT--BSHHHHHHHHHHHHHH
T ss_pred             cCCC--CCHHHHHHHHHHHHHH
Confidence            9999  9999999999876643

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=98.32  E-value=8.7e-07  Score=74.26  Aligned_cols=60  Identities=25%  Similarity=0.222  Sum_probs=38.8

Q ss_pred             cceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeee-eEEecCC-CcEEEEeCCCCCC
Q psy15351        167 YNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMS-QVKISEK-PLIYILDTPGISL  233 (352)
Q Consensus       167 ~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~-~~~~~~~-~~~~l~DtPGi~~  233 (352)
                      +.++|+++|.+|||||||+|+|.+.     .  .....++++..... .+..... -.+.++||||...
T Consensus        17 ~~~ki~v~G~~~~GKSsli~~l~~~-----~--~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~   78 (187)
T 2a9k_A           17 ALHKVIMVGSGGVGKSALTLQFMYD-----E--FVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQED   78 (187)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHS-----C--CCCSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTC
T ss_pred             CceEEEEECCCCCCHHHHHHHHhhC-----C--CCCcCCCccceEEEEEEEECCEEEEEEEEECCCCcc
Confidence            4689999999999999999999963     2  12233334333222 2222221 1588999999653

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=98.32  E-value=6.1e-07  Score=75.25  Aligned_cols=91  Identities=13%  Similarity=0.074  Sum_probs=61.9

Q ss_pred             HHhhccCEEEEEEcCCCCCCCcCH--HHHHHHh---CCCCEEEEEEcccCCCccc--------------hHHHHHHHHhh
Q psy15351         10 KHLKNVDIVIEVHDSRMPFTGRNH--LLQQSVQ---NIRPMVLVLNKRDLINSKH--------------ESLIEEKVRKE   70 (352)
Q Consensus        10 ~~i~~aD~vl~VvDar~p~~~~~~--~l~~~l~---~~k~~ilVlNK~Dl~~~~~--------------~~~~~~~~~~~   70 (352)
                      ..+..+|++++|+|+.++.+..+.  .+...+.   .+.|+++|+||+|+.+...              ..+..++.+..
T Consensus        72 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  151 (186)
T 1mh1_A           72 LSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEI  151 (186)
T ss_dssp             GGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHT
T ss_pred             HhccCCcEEEEEEECCChhhHHHHHHHHHHHHHHhCCCCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhc
Confidence            357889999999999875332221  1222222   3789999999999976421              12233333334


Q ss_pred             cCCCCcEEEeecCCCCCCCHHHHHHHHHHHhhhc
Q psy15351         71 QSHISEVIFTNCRNPNCKGVQKILPTLQHISDNM  104 (352)
Q Consensus        71 ~~~~~~v~~iSa~~~~~~gi~~L~~~i~~~~~~~  104 (352)
                      +..  +++.+||+++  .|++++++++.+.+.+.
T Consensus       152 ~~~--~~~~~Sa~~g--~gi~~l~~~l~~~~~~~  181 (186)
T 1mh1_A          152 GAV--KYLECSALTQ--RGLKTVFDEAIRAVLCP  181 (186)
T ss_dssp             TCS--EEEECCTTTC--TTHHHHHHHHHHHHSCC
T ss_pred             CCc--EEEEecCCCc--cCHHHHHHHHHHHHhcc
Confidence            432  4899999999  99999999998776543

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}

Probab=98.32  E-value=3.3e-07  Score=79.44  Aligned_cols=64  Identities=16%  Similarity=0.173  Sum_probs=43.2

Q ss_pred             CcceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCC--CcEEEEeCCCCCCC
Q psy15351        166 VYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEK--PLIYILDTPGISLP  234 (352)
Q Consensus       166 ~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~--~~~~l~DtPGi~~~  234 (352)
                      ...++|+++|.+|||||||+|+|.+.    ..........+++..... +....+  -.+.++||||....
T Consensus         9 ~~~~ki~vvG~~~~GKSsli~~l~~~----~~~~~~~~t~~~~~~~~~-~~~~~~~~~~~~l~Dt~G~~~~   74 (218)
T 4djt_A            9 ELTYKICLIGDGGVGKTTYINRVLDG----RFEKNYNATVGAVNHPVT-FLDDQGNVIKFNVWDTAGQEKK   74 (218)
T ss_dssp             -CEEEEEEECCTTSSHHHHHCBCTTC----STTCEEETTTTEEEEEEE-EEBTTSCEEEEEEEEECSGGGT
T ss_pred             cCccEEEEECCCCCCHHHHHHHHhcC----CCCCCCCCccceeeEEEE-EEeCCCcEEEEEEEecCCchhh
Confidence            35689999999999999999999863    222344556666554432 222222  24889999997643

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=98.32  E-value=6.2e-07  Score=75.84  Aligned_cols=62  Identities=23%  Similarity=0.277  Sum_probs=38.4

Q ss_pred             CcceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecC-CCcEEEEeCCCCC
Q psy15351        166 VYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISE-KPLIYILDTPGIS  232 (352)
Q Consensus       166 ~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~-~~~~~l~DtPGi~  232 (352)
                      .+.++|+++|.+|||||||+|+|.+...    .....+..|.+.... .+...+ ...+.++||||..
T Consensus        18 ~~~~ki~v~G~~~~GKSsli~~l~~~~~----~~~~~~t~~~~~~~~-~~~~~~~~~~~~l~Dt~G~~   80 (189)
T 1z06_A           18 SRIFKIIVIGDSNVGKTCLTYRFCAGRF----PDRTEATIGVDFRER-AVDIDGERIKIQLWDTAGQE   80 (189)
T ss_dssp             -CEEEEEEECCTTSSHHHHHHHHHHSSC----CSSCCCCCSCCEEEE-EEEETTEEEEEEEEECCCSH
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHcCCC----CCCCCCCcceEEEEE-EEEECCEEEEEEEEECCCch
Confidence            3568999999999999999999986321    112223333332221 222222 1268999999953

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=98.32  E-value=1.6e-06  Score=74.10  Aligned_cols=91  Identities=14%  Similarity=0.123  Sum_probs=63.7

Q ss_pred             HHHHhhccCEEEEEEcCCCCCCCcC--HHHHHHHh----CCCCEEEEEEcccCCCccc--hHHHHHHHHhhcCCCCcEEE
Q psy15351          8 IEKHLKNVDIVIEVHDSRMPFTGRN--HLLQQSVQ----NIRPMVLVLNKRDLINSKH--ESLIEEKVRKEQSHISEVIF   79 (352)
Q Consensus         8 ~~~~i~~aD~vl~VvDar~p~~~~~--~~l~~~l~----~~k~~ilVlNK~Dl~~~~~--~~~~~~~~~~~~~~~~~v~~   79 (352)
                      ....+..+|++++|+|+.++.+...  ..+..+..    .+.|+++|+||+|+.+...  ..+..++....+..   ++.
T Consensus        79 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~---~~~  155 (206)
T 2bov_A           79 RDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVN---YVE  155 (206)
T ss_dssp             HHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCE---EEE
T ss_pred             HHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccccccccHHHHHHHHHHhCCe---EEE
Confidence            3456788999999999987532211  11112222    3789999999999976432  34555555555654   999


Q ss_pred             eecCCCCCCCHHHHHHHHHHHhhh
Q psy15351         80 TNCRNPNCKGVQKILPTLQHISDN  103 (352)
Q Consensus        80 iSa~~~~~~gi~~L~~~i~~~~~~  103 (352)
                      +||+++  .|+++++++|.+.+..
T Consensus       156 ~Sa~~g--~gi~~l~~~l~~~i~~  177 (206)
T 2bov_A          156 TSAKTR--ANVDKVFFDLMREIRA  177 (206)
T ss_dssp             ECTTTC--TTHHHHHHHHHHHHHH
T ss_pred             EeCCCC--CCHHHHHHHHHHHHHH
Confidence            999999  9999999998776543

>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}

Probab=98.32  E-value=3.4e-07  Score=87.90  Aligned_cols=92  Identities=22%  Similarity=0.238  Sum_probs=67.1

Q ss_pred             HHHHHHHhhccCEEEEEEcCCCCCCCcCHHHHHHHh-CCCCEEEEEEcccCCCccchHHHHHHHH-hhcCCCCcEEEeec
Q psy15351          5 LKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQ-NIRPMVLVLNKRDLINSKHESLIEEKVR-KEQSHISEVIFTNC   82 (352)
Q Consensus         5 ~~~~~~~i~~aD~vl~VvDar~p~~~~~~~l~~~l~-~~k~~ilVlNK~Dl~~~~~~~~~~~~~~-~~~~~~~~v~~iSa   82 (352)
                      +++++..+..+|++|+|+|+  ........+...++ .+.|+++|+||+|+.+.... +..+.+. ..+.+   ++.+||
T Consensus       104 ~~~~~~~l~~aD~vllVvD~--~~~~~~~~~l~~l~~~~~piIvV~NK~Dl~~~~~~-~~~~~l~~~~g~~---v~~vSA  177 (423)
T 3qq5_A          104 VEKARRVFYRADCGILVTDS--APTPYEDDVVNLFKEMEIPFVVVVNKIDVLGEKAE-ELKGLYESRYEAK---VLLVSA  177 (423)
T ss_dssp             HHHHHHHHTSCSEEEEECSS--SCCHHHHHHHHHHHHTTCCEEEECCCCTTTTCCCT-HHHHHSSCCTTCC---CCCCSS
T ss_pred             HHHHHHHHhcCCEEEEEEeC--CChHHHHHHHHHHHhcCCCEEEEEeCcCCCCccHH-HHHHHHHHHcCCC---EEEEEC
Confidence            45677889999999999999  23333334444444 68999999999999877654 2333332 22444   889999


Q ss_pred             CCCCCCCHHHHHHHHHHHhhhc
Q psy15351         83 RNPNCKGVQKILPTLQHISDNM  104 (352)
Q Consensus        83 ~~~~~~gi~~L~~~i~~~~~~~  104 (352)
                      +++  .|+++++++|.+.++..
T Consensus       178 ktg--~gI~eL~~~L~~~l~~~  197 (423)
T 3qq5_A          178 LQK--KGFDDIGKTISEILPGD  197 (423)
T ss_dssp             CCT--TSTTTHHHHHHHHSCCC
T ss_pred             CCC--CCHHHHHHHHHHhhhhh
Confidence            999  99999999999888643

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=98.32  E-value=1.2e-06  Score=74.88  Aligned_cols=88  Identities=16%  Similarity=0.242  Sum_probs=59.7

Q ss_pred             HHhhccCEEEEEEcCCCCCCCcC--HHHHHHHh---CCCCEEEEEEcccCCCccc--------------hHHHHHHHHhh
Q psy15351         10 KHLKNVDIVIEVHDSRMPFTGRN--HLLQQSVQ---NIRPMVLVLNKRDLINSKH--------------ESLIEEKVRKE   70 (352)
Q Consensus        10 ~~i~~aD~vl~VvDar~p~~~~~--~~l~~~l~---~~k~~ilVlNK~Dl~~~~~--------------~~~~~~~~~~~   70 (352)
                      ..+..+|++++|+|+.++.+...  ..+...+.   .+.|+++|+||+|+.+...              ..+..++.+..
T Consensus        92 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  171 (201)
T 2gco_A           92 LSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRI  171 (201)
T ss_dssp             GGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHT
T ss_pred             HhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhC
Confidence            35788999999999986532211  12222232   3789999999999987532              12233333333


Q ss_pred             cCCCCcEEEeecCCCCCCCHHHHHHHHHHHh
Q psy15351         71 QSHISEVIFTNCRNPNCKGVQKILPTLQHIS  101 (352)
Q Consensus        71 ~~~~~~v~~iSa~~~~~~gi~~L~~~i~~~~  101 (352)
                      +..  +++.+||+++  .|+++++++|.+.+
T Consensus       172 ~~~--~~~~~SA~~g--~gi~~l~~~i~~~~  198 (201)
T 2gco_A          172 SAF--GYLECSAKTK--EGVREVFEMATRAG  198 (201)
T ss_dssp             TCS--EEEECCTTTC--TTHHHHHHHHHHHH
T ss_pred             CCc--EEEEeeCCCC--CCHHHHHHHHHHHH
Confidence            442  4899999999  99999999987643

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=98.32  E-value=7.6e-07  Score=74.44  Aligned_cols=88  Identities=17%  Similarity=0.116  Sum_probs=59.8

Q ss_pred             HHhhccCEEEEEEcCCCCCCCcCH--HHHHHHh---CCCCEEEEEEcccCCCccc------------hHHHHHHHHhhcC
Q psy15351         10 KHLKNVDIVIEVHDSRMPFTGRNH--LLQQSVQ---NIRPMVLVLNKRDLINSKH------------ESLIEEKVRKEQS   72 (352)
Q Consensus        10 ~~i~~aD~vl~VvDar~p~~~~~~--~l~~~l~---~~k~~ilVlNK~Dl~~~~~------------~~~~~~~~~~~~~   72 (352)
                      ..+..+|++++|+|+.++.+..+.  .+...+.   .+.|+++|+||+|+.+...            ..+..++.+..+.
T Consensus        75 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  154 (182)
T 3bwd_D           75 LSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGA  154 (182)
T ss_dssp             GGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHHTC
T ss_pred             hhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHcCC
Confidence            457789999999999875432211  1222222   3789999999999976432            1222333333454


Q ss_pred             CCCcEEEeecCCCCCCCHHHHHHHHHHHh
Q psy15351         73 HISEVIFTNCRNPNCKGVQKILPTLQHIS  101 (352)
Q Consensus        73 ~~~~v~~iSa~~~~~~gi~~L~~~i~~~~  101 (352)
                      .  +++.+||+++  .|++++++++.+.+
T Consensus       155 ~--~~~~~Sa~~~--~gi~~l~~~l~~~i  179 (182)
T 3bwd_D          155 P--AYIECSSKSQ--ENVKGVFDAAIRVV  179 (182)
T ss_dssp             S--EEEECCTTTC--TTHHHHHHHHHHHH
T ss_pred             C--EEEEEECCCC--CCHHHHHHHHHHHH
Confidence            2  4899999999  99999999987654

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=98.31  E-value=7.3e-07  Score=73.61  Aligned_cols=60  Identities=15%  Similarity=0.195  Sum_probs=32.5

Q ss_pred             eEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeee-eEEecC-CCcEEEEeCCCCCCC
Q psy15351        169 TTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMS-QVKISE-KPLIYILDTPGISLP  234 (352)
Q Consensus       169 ~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~-~~~~~~-~~~~~l~DtPGi~~~  234 (352)
                      ++|+++|.+|||||||+|++.+.     ....... +.+|.+... .+...+ .-.+.++||||....
T Consensus         3 ~ki~ivG~~~~GKSsli~~l~~~-----~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~   64 (169)
T 3q85_A            3 FKVMLVGESGVGKSTLAGTFGGL-----QGDHAHE-MENSEDTYERRIMVDKEEVTLIVYDIWEQGDA   64 (169)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHCC------------------CEEEEEEEETTEEEEEEEECCCCC---
T ss_pred             EEEEEECCCCCCHHHHHHHHHhc-----cCccccc-CCCcCCeeeEEEEECCeEEEEEEEECCCcccc
Confidence            68999999999999999999862     1111111 222222222 222222 125779999998653

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=98.31  E-value=1.5e-06  Score=73.82  Aligned_cols=91  Identities=13%  Similarity=0.085  Sum_probs=62.7

Q ss_pred             HHHHhhccCEEEEEEcCCCCCCCcC-HHHHHHH-h-----CCCCEEEEEEcccCCCccc-hHHHHHHHHhhcCCCCcEEE
Q psy15351          8 IEKHLKNVDIVIEVHDSRMPFTGRN-HLLQQSV-Q-----NIRPMVLVLNKRDLINSKH-ESLIEEKVRKEQSHISEVIF   79 (352)
Q Consensus         8 ~~~~i~~aD~vl~VvDar~p~~~~~-~~l~~~l-~-----~~k~~ilVlNK~Dl~~~~~-~~~~~~~~~~~~~~~~~v~~   79 (352)
                      ....+..+|++++|+|+.++.+... ..+...+ .     .+.|+++|+||+|+.+... .....++....+..   ++.
T Consensus        73 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~---~~~  149 (199)
T 2gf0_A           73 QRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQREVDTREAQAVAQEWKCA---FME  149 (199)
T ss_dssp             HHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSSCSSCHHHHHHHHHHHTCE---EEE
T ss_pred             HHHhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCccccCHHHHHHHHHHhCCe---EEE
Confidence            3456788999999999986533221 1122211 1     2679999999999986443 23333344444554   899


Q ss_pred             eecCCCCCCCHHHHHHHHHHHhhh
Q psy15351         80 TNCRNPNCKGVQKILPTLQHISDN  103 (352)
Q Consensus        80 iSa~~~~~~gi~~L~~~i~~~~~~  103 (352)
                      +||+++  .|+++++++|.+.+..
T Consensus       150 ~Sa~~~--~gi~~l~~~l~~~~~~  171 (199)
T 2gf0_A          150 TSAKMN--YNVKELFQELLTLETR  171 (199)
T ss_dssp             CBTTTT--BSHHHHHHHHHHHCSS
T ss_pred             EecCCC--CCHHHHHHHHHHHHhh
Confidence            999999  9999999999877654

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=98.31  E-value=8.7e-07  Score=76.17  Aligned_cols=61  Identities=18%  Similarity=0.153  Sum_probs=38.6

Q ss_pred             CcceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCCc--EEEEeCCCCCC
Q psy15351        166 VYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPL--IYILDTPGISL  233 (352)
Q Consensus       166 ~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~--~~l~DtPGi~~  233 (352)
                      .+.++|+++|.+|||||||+|++.+..       ..+..++++.+.........+..  +.++||||...
T Consensus        28 ~~~~ki~vvG~~~~GKSsLi~~l~~~~-------~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~   90 (204)
T 4gzl_A           28 GQAIKCVVVGDGAVGKTCLLISYTTNA-------FPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLED   90 (204)
T ss_dssp             --CEEEEEEESTTSSHHHHHHHHHHSC-------CCC-CCCCSEEEEEEEEECC-CEEEEEEEEECCSGG
T ss_pred             CCeEEEEEECcCCCCHHHHHHHHHhCC-------CCCCcCCeecceeEEEEEECCEEEEEEEEECCCchh
Confidence            467999999999999999999998521       22334445444332222233333  45999999753

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=98.31  E-value=8.6e-07  Score=75.67  Aligned_cols=63  Identities=19%  Similarity=0.132  Sum_probs=37.4

Q ss_pred             cCcceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCC--cEEEEeCCCCCCC
Q psy15351        165 EVYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKP--LIYILDTPGISLP  234 (352)
Q Consensus       165 ~~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~--~~~l~DtPGi~~~  234 (352)
                      ....++|+++|.+|||||||+|++.+.     .  .....++|+...........+.  .+.++||||....
T Consensus        17 ~~~~~ki~~~G~~~~GKssl~~~l~~~-----~--~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~   81 (201)
T 2q3h_A           17 EGRGVKCVLVGDGAVGKTSLVVSYTTN-----G--YPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEF   81 (201)
T ss_dssp             ---CEEEEEECSTTSSHHHHHHHHHC---------------CCSSEEEEEEEEETTEEEEEEEEECCCSTTC
T ss_pred             CCcceEEEEECCCCCCHHHHHHHHHhC-----C--CCCCCCCcccceeEEEEEECCEEEEEEEEECCCCHHH
Confidence            356799999999999999999999963     2  2233444444332222222332  4679999998653

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=98.31  E-value=1.2e-06  Score=73.92  Aligned_cols=25  Identities=24%  Similarity=0.430  Sum_probs=22.9

Q ss_pred             CcceEEEEeCCCCCChHHHHHHHhC
Q psy15351        166 VYNTTVMVVGVPNVGKSSIINALRS  190 (352)
Q Consensus       166 ~~~~~v~i~G~pnvGKStliN~l~~  190 (352)
                      ...++|+++|.+|||||||+|+|.+
T Consensus         9 ~~~~ki~v~G~~~~GKSsli~~l~~   33 (195)
T 3bc1_A            9 DYLIKFLALGDSGVGKTSVLYQYTD   33 (195)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHH
T ss_pred             ceeEEEEEECCCCCCHHHHHHHHhc
Confidence            3568999999999999999999996

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=98.31  E-value=6.5e-07  Score=75.66  Aligned_cols=58  Identities=26%  Similarity=0.393  Sum_probs=40.8

Q ss_pred             cceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCCcEEEEeCCCCCC
Q psy15351        167 YNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISL  233 (352)
Q Consensus       167 ~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~~  233 (352)
                      +.++|+++|.+|||||||+|++.+     .......++.|.+...   +.. .+..+.++||||...
T Consensus        21 ~~~~i~v~G~~~~GKssli~~l~~-----~~~~~~~~t~~~~~~~---~~~-~~~~~~~~Dt~G~~~   78 (189)
T 2x77_A           21 RKIRVLMLGLDNAGKTSILYRLHL-----GDVVTTVPTVGVNLET---LQY-KNISFEVWDLGGQTG   78 (189)
T ss_dssp             SCEEEEEEEETTSSHHHHHHHTCC-----SCCEEECSSTTCCEEE---EEE-TTEEEEEEEECCSSS
T ss_pred             CceEEEEECCCCCCHHHHHHHHHc-----CCCCCcCCCCceEEEE---EEE-CCEEEEEEECCCCHh
Confidence            568999999999999999999986     2333344444543322   222 345789999999754

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=98.30  E-value=8e-07  Score=72.97  Aligned_cols=55  Identities=20%  Similarity=0.326  Sum_probs=36.0

Q ss_pred             eEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCCcEEEEeCCCCC
Q psy15351        169 TTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGIS  232 (352)
Q Consensus       169 ~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~  232 (352)
                      ++|+++|.+|||||||+|++.+..     .....++.|...    ......+..+.++||||..
T Consensus         1 ~ki~~~G~~~~GKssl~~~l~~~~-----~~~~~~t~~~~~----~~~~~~~~~~~i~Dt~G~~   55 (164)
T 1r8s_A            1 MRILMVGLDAAGKTTILYKLKLGE-----IVTTIPTIGFNV----ETVEYKNISFTVWDVGGQD   55 (164)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHC-----SSCCCCCSSCCE----EEEECSSCEEEEEECCCCG
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCC-----cCcccCcCceeE----EEEEECCEEEEEEEcCCCh
Confidence            479999999999999999998632     112222223221    1112234579999999974

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=98.30  E-value=9.3e-07  Score=74.67  Aligned_cols=60  Identities=25%  Similarity=0.270  Sum_probs=36.8

Q ss_pred             cceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCC--cEEEEeCCCCCC
Q psy15351        167 YNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKP--LIYILDTPGISL  233 (352)
Q Consensus       167 ~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~--~~~l~DtPGi~~  233 (352)
                      +.++|+++|.+|||||||+|+|.+.     .  .....++++...........+.  .+.++||||...
T Consensus        20 ~~~ki~vvG~~~~GKSsli~~l~~~-----~--~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~   81 (190)
T 3con_A           20 TEYKLVVVGAGGVGKSALTIQLIQN-----H--FVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEE   81 (190)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHS-----S--CCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---
T ss_pred             ceeEEEEECcCCCCHHHHHHHHHcC-----C--CccccCCccceEEEEEEEECCEEEEEEEEECCChHH
Confidence            4589999999999999999999863     1  1122333433322211122222  488999999653

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=98.30  E-value=6.5e-07  Score=76.83  Aligned_cols=62  Identities=19%  Similarity=0.237  Sum_probs=39.3

Q ss_pred             cceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeee-eEEecCC-CcEEEEeCCCCCCC
Q psy15351        167 YNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMS-QVKISEK-PLIYILDTPGISLP  234 (352)
Q Consensus       167 ~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~-~~~~~~~-~~~~l~DtPGi~~~  234 (352)
                      ..++|+++|.+|||||||+|+|.+..      ......|.++.+... .+...+. -.+.++||||....
T Consensus         7 ~~~ki~v~G~~~~GKSsli~~l~~~~------~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~   70 (206)
T 2bcg_Y            7 YLFKLLLIGNSGVGKSCLLLRFSDDT------YTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERF   70 (206)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHCC------CCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTT
T ss_pred             cceEEEEECCCCCCHHHHHHHHhcCC------CCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHH
Confidence            46899999999999999999999632      122223333332221 2222221 25899999997543

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=98.30  E-value=1.2e-06  Score=73.43  Aligned_cols=62  Identities=19%  Similarity=0.182  Sum_probs=37.8

Q ss_pred             cCcceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCC--cEEEEeCCCCCC
Q psy15351        165 EVYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKP--LIYILDTPGISL  233 (352)
Q Consensus       165 ~~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~--~~~l~DtPGi~~  233 (352)
                      ..+.++|+++|.+|||||||+|+|.+..       .....+.++...........+.  .+.++||||...
T Consensus        15 ~~~~~ki~v~G~~~~GKSsl~~~l~~~~-------~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~   78 (183)
T 3kkq_A           15 NLPTYKLVVVGDGGVGKSALTIQFFQKI-------FVDDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEE   78 (183)
T ss_dssp             CCCEEEEEEECSTTSSHHHHHHHHHHSC-------CCSCCCTTCCEEEEEEEEETTEEEEEEEEECCSCGG
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHhCC-------CCCCCCCCccceeEEEEEeCCcEEEEEEEECCCchh
Confidence            3467999999999999999999999621       1112222222221222222333  355699999654

>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*

Probab=98.29  E-value=2.4e-06  Score=85.42  Aligned_cols=98  Identities=13%  Similarity=0.152  Sum_probs=70.0

Q ss_pred             HHHHHHHHhhccCEEEEEEcCCCCCCCcCHHHHH-HHhCCCCEEEEEEcccCCCccchHHHHHHHHhh-cCCCCcEEEee
Q psy15351          4 GLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQ-SVQNIRPMVLVLNKRDLINSKHESLIEEKVRKE-QSHISEVIFTN   81 (352)
Q Consensus         4 ~~~~~~~~i~~aD~vl~VvDar~p~~~~~~~l~~-~l~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~-~~~~~~v~~iS   81 (352)
                      ....+...+..+|.+|+|+|+.++.......... ....+.|+++|+||+|+.+.+ .....+.+.+. +....+++++|
T Consensus        86 F~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~~~ipiIvviNKiDl~~a~-~~~v~~el~~~lg~~~~~vi~vS  164 (600)
T 2ywe_A           86 FSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVEQDLVIIPVINKIDLPSAD-VDRVKKQIEEVLGLDPEEAILAS  164 (600)
T ss_dssp             GHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHHTTCEEEEEEECTTSTTCC-HHHHHHHHHHTSCCCGGGCEECB
T ss_pred             HHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHCCCCEEEEEeccCccccC-HHHHHHHHHHhhCCCcccEEEEE
Confidence            3445677889999999999999876543332222 222688999999999998654 23333444332 44333589999


Q ss_pred             cCCCCCCCHHHHHHHHHHHhhhc
Q psy15351         82 CRNPNCKGVQKILPTLQHISDNM  104 (352)
Q Consensus        82 a~~~~~~gi~~L~~~i~~~~~~~  104 (352)
                      |+++  .|+++|++++.+.++..
T Consensus       165 Aktg--~GI~~Lle~I~~~lp~p  185 (600)
T 2ywe_A          165 AKEG--IGIEEILEAIVNRIPPP  185 (600)
T ss_dssp             TTTT--BSHHHHHHHHHHHSCCC
T ss_pred             eecC--CCchHHHHHHHHhcccc
Confidence            9999  99999999998887653

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=98.29  E-value=2.2e-06  Score=72.35  Aligned_cols=90  Identities=20%  Similarity=0.186  Sum_probs=61.5

Q ss_pred             HHHhhccCEEEEEEcCCCCCCCcC-HHHHHHHh-----CCCCEEEEEEcccCCCccc-hHHHHHHHHhhcCCCCcEEEee
Q psy15351          9 EKHLKNVDIVIEVHDSRMPFTGRN-HLLQQSVQ-----NIRPMVLVLNKRDLINSKH-ESLIEEKVRKEQSHISEVIFTN   81 (352)
Q Consensus         9 ~~~i~~aD~vl~VvDar~p~~~~~-~~l~~~l~-----~~k~~ilVlNK~Dl~~~~~-~~~~~~~~~~~~~~~~~v~~iS   81 (352)
                      ...+..+|++++|+|+.++.+..+ ..+...+.     .+.|+++|+||+|+.+... ..+..++.++.+.+   ++.+|
T Consensus        87 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~---~~~~S  163 (190)
T 3con_A           87 DQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPTRTVDTKQAHELAKSYGIP---FIETS  163 (190)
T ss_dssp             ---CTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHHHHHTCC---EEECC
T ss_pred             HHhhCcCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCcccCCHHHHHHHHHHcCCe---EEEEe
Confidence            456789999999999987642211 11111111     3789999999999986432 33444444455665   99999


Q ss_pred             cCCCCCCCHHHHHHHHHHHhhh
Q psy15351         82 CRNPNCKGVQKILPTLQHISDN  103 (352)
Q Consensus        82 a~~~~~~gi~~L~~~i~~~~~~  103 (352)
                      |+++  .|+++++++|.+.+..
T Consensus       164 a~~~--~gi~~l~~~l~~~~~~  183 (190)
T 3con_A          164 AKTR--QGVEDAFYTLVREIRQ  183 (190)
T ss_dssp             TTTC--TTHHHHHHHHHHHHHH
T ss_pred             CCCC--CCHHHHHHHHHHHHHH
Confidence            9999  9999999999876654

>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8

Probab=98.29  E-value=6.3e-07  Score=83.69  Aligned_cols=93  Identities=17%  Similarity=0.280  Sum_probs=61.9

Q ss_pred             HHHHHHhhccCEEEEEEcCCCC-----CCCcCHHHHHHHh-----CCCCEEEEEEcccCCCccc-hHHHHHHHHhhcCCC
Q psy15351          6 KDIEKHLKNVDIVIEVHDSRMP-----FTGRNHLLQQSVQ-----NIRPMVLVLNKRDLINSKH-ESLIEEKVRKEQSHI   74 (352)
Q Consensus         6 ~~~~~~i~~aD~vl~VvDar~p-----~~~~~~~l~~~l~-----~~k~~ilVlNK~Dl~~~~~-~~~~~~~~~~~~~~~   74 (352)
                      .++.+.++++|++|+|+|+.+.     +......+.++..     ..+|+++|+||+|+.+... .+++.+.+.. ..  
T Consensus       228 ~~fl~~i~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~~e~~~~l~~~l~~-~~--  304 (342)
T 1lnz_A          228 HQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAAENLEAFKEKLTD-DY--  304 (342)
T ss_dssp             HHHHHHHHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHHHHHHHHHHHCCS-CC--
T ss_pred             HHHHHHHHhccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCCHHHHHHHHHHhhc-CC--
Confidence            4566778899999999999652     1111111112211     2689999999999986532 2222222210 12  


Q ss_pred             CcEEEeecCCCCCCCHHHHHHHHHHHhhhc
Q psy15351         75 SEVIFTNCRNPNCKGVQKILPTLQHISDNM  104 (352)
Q Consensus        75 ~~v~~iSa~~~~~~gi~~L~~~i~~~~~~~  104 (352)
                       +++.+||+++  +|+++|+++|.+.+.+.
T Consensus       305 -~v~~iSA~tg--~gi~eL~~~l~~~l~~~  331 (342)
T 1lnz_A          305 -PVFPISAVTR--EGLRELLFEVANQLENT  331 (342)
T ss_dssp             -CBCCCSSCCS--STTHHHHHHHHHHHTSC
T ss_pred             -CEEEEECCCC--cCHHHHHHHHHHHHhhC
Confidence             4889999999  99999999999887654

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=98.29  E-value=2.2e-06  Score=72.90  Aligned_cols=90  Identities=17%  Similarity=0.033  Sum_probs=62.0

Q ss_pred             HHHHhhccCEEEEEEcCCCCCCCcC--HHHHHHH---h-CCCCEEEEEEcccCCCccc--hHHHHHHHHhhcCCCCcEEE
Q psy15351          8 IEKHLKNVDIVIEVHDSRMPFTGRN--HLLQQSV---Q-NIRPMVLVLNKRDLINSKH--ESLIEEKVRKEQSHISEVIF   79 (352)
Q Consensus         8 ~~~~i~~aD~vl~VvDar~p~~~~~--~~l~~~l---~-~~k~~ilVlNK~Dl~~~~~--~~~~~~~~~~~~~~~~~v~~   79 (352)
                      ....+..+|++++|+|+.++.+..+  ..+..+.   . .+.|+++|+||+|+.+...  ..+..++.++.+..   ++.
T Consensus        92 ~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~---~~~  168 (196)
T 2atv_A           92 REGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATELACA---FYE  168 (196)
T ss_dssp             HHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSE---EEE
T ss_pred             hhhhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccccccCHHHHHHHHHHhCCe---EEE
Confidence            3456788999999999987543222  1122221   1 4789999999999976432  23334444444554   899


Q ss_pred             eecCCCCCC-CHHHHHHHHHHHhh
Q psy15351         80 TNCRNPNCK-GVQKILPTLQHISD  102 (352)
Q Consensus        80 iSa~~~~~~-gi~~L~~~i~~~~~  102 (352)
                      +||+++  . |+++++++|.+.+.
T Consensus       169 ~Sa~~g--~~gi~~l~~~l~~~i~  190 (196)
T 2atv_A          169 CSACTG--EGNITEIFYELCREVR  190 (196)
T ss_dssp             CCTTTC--TTCHHHHHHHHHHHHH
T ss_pred             ECCCcC--CcCHHHHHHHHHHHHH
Confidence            999999  9 99999999876654

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=98.29  E-value=3.5e-06  Score=69.96  Aligned_cols=90  Identities=11%  Similarity=0.059  Sum_probs=60.9

Q ss_pred             HHHHhhccCEEEEEEcCCCCCCCcC--HHHHH---HHh----CCCCEEEEEEcccCCCccc-hHHHHHHHH-hhcCCCCc
Q psy15351          8 IEKHLKNVDIVIEVHDSRMPFTGRN--HLLQQ---SVQ----NIRPMVLVLNKRDLINSKH-ESLIEEKVR-KEQSHISE   76 (352)
Q Consensus         8 ~~~~i~~aD~vl~VvDar~p~~~~~--~~l~~---~l~----~~k~~ilVlNK~Dl~~~~~-~~~~~~~~~-~~~~~~~~   76 (352)
                      ....+..+|++++|+|+.++.+...  ..+..   ...    .+.|+++|+||+|+..... .++..++.+ ..+.   +
T Consensus        73 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~---~  149 (177)
T 1wms_A           73 RTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQAWCRDNGDY---P  149 (177)
T ss_dssp             HGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCSSCHHHHHHHHHHTTCC---C
T ss_pred             HHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCcccccccCHHHHHHHHHhcCCc---e
Confidence            3456788999999999987643222  11111   111    3579999999999974332 334444443 2234   4


Q ss_pred             EEEeecCCCCCCCHHHHHHHHHHHhh
Q psy15351         77 VIFTNCRNPNCKGVQKILPTLQHISD  102 (352)
Q Consensus        77 v~~iSa~~~~~~gi~~L~~~i~~~~~  102 (352)
                      ++.+||+++  .|++++++++.+.+.
T Consensus       150 ~~~~Sa~~~--~gi~~l~~~l~~~~~  173 (177)
T 1wms_A          150 YFETSAKDA--TNVAAAFEEAVRRVL  173 (177)
T ss_dssp             EEECCTTTC--TTHHHHHHHHHHHHH
T ss_pred             EEEEeCCCC--CCHHHHHHHHHHHHH
Confidence            999999999  999999999877654

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=98.28  E-value=6.9e-07  Score=75.75  Aligned_cols=63  Identities=22%  Similarity=0.273  Sum_probs=38.3

Q ss_pred             CcceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecC-CCcEEEEeCCCCCC
Q psy15351        166 VYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISE-KPLIYILDTPGISL  233 (352)
Q Consensus       166 ~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~-~~~~~l~DtPGi~~  233 (352)
                      ...++|+++|.+|||||||+|+|.+...    .....+..|.+.... .+...+ .-.+.++||||...
T Consensus        19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~----~~~~~~t~~~~~~~~-~~~~~~~~~~~~i~Dt~G~~~   82 (191)
T 2a5j_A           19 SYLFKYIIIGDTGVGKSCLLLQFTDKRF----QPVHDLTIGVEFGAR-MVNIDGKQIKLQIWDTAGQES   82 (191)
T ss_dssp             CEEEEEEEESSTTSSHHHHHHHHHHSCC----CC-----CCSSEEEE-EEEETTEEEEEEEECCTTGGG
T ss_pred             CcceEEEEECcCCCCHHHHHHHHhcCCC----CCCCCCcccceeEEE-EEEECCEEEEEEEEECCCchh
Confidence            4578999999999999999999996321    111222333333221 222221 12588999999654

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=98.28  E-value=5.5e-07  Score=76.97  Aligned_cols=62  Identities=16%  Similarity=0.110  Sum_probs=38.9

Q ss_pred             CcceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCC--cEEEEeCCCCCC
Q psy15351        166 VYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKP--LIYILDTPGISL  233 (352)
Q Consensus       166 ~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~--~~~l~DtPGi~~  233 (352)
                      ...++|+++|.+|||||||+|++.+.      .......|++|.+.........+.  .+.++||||...
T Consensus        21 ~~~~ki~vvG~~~vGKSsLi~~l~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~   84 (195)
T 3cbq_A           21 DGIFKVMLVGESGVGKSTLAGTFGGL------QGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGD   84 (195)
T ss_dssp             -CEEEEEEECSTTSSHHHHHHHTCCE------ECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSG
T ss_pred             CcEEEEEEECCCCCCHHHHHHHHHhc------cCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCcc
Confidence            45689999999999999999999742      112223444444332222122232  467889999853

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=98.28  E-value=2.3e-06  Score=73.13  Aligned_cols=89  Identities=18%  Similarity=0.154  Sum_probs=60.8

Q ss_pred             HHhhccCEEEEEEcCCCCCCCcC--HHHHHHHh-------CCCCEEEEEEcccCCCccc-hHHHHHHHH-hhcCCCCcEE
Q psy15351         10 KHLKNVDIVIEVHDSRMPFTGRN--HLLQQSVQ-------NIRPMVLVLNKRDLINSKH-ESLIEEKVR-KEQSHISEVI   78 (352)
Q Consensus        10 ~~i~~aD~vl~VvDar~p~~~~~--~~l~~~l~-------~~k~~ilVlNK~Dl~~~~~-~~~~~~~~~-~~~~~~~~v~   78 (352)
                      ..+..+|++|+|+|+.++.+...  ..+..+..       .+.|+++|+||+|+.+... .....++.. ..+..   ++
T Consensus        76 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~---~~  152 (207)
T 1vg8_A           76 AFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYSKNNIP---YF  152 (207)
T ss_dssp             GGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSCHHHHHHHHHHTTSCC---EE
T ss_pred             HHHhCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCcccccCHHHHHHHHHhcCCce---EE
Confidence            35678999999999987643222  11222221       2679999999999985433 233334433 23444   99


Q ss_pred             EeecCCCCCCCHHHHHHHHHHHhhh
Q psy15351         79 FTNCRNPNCKGVQKILPTLQHISDN  103 (352)
Q Consensus        79 ~iSa~~~~~~gi~~L~~~i~~~~~~  103 (352)
                      .+||+++  .|+++++++|.+.+..
T Consensus       153 ~~Sa~~g--~gi~~l~~~l~~~~~~  175 (207)
T 1vg8_A          153 ETSAKEA--INVEQAFQTIARNALK  175 (207)
T ss_dssp             ECBTTTT--BSHHHHHHHHHHHHHH
T ss_pred             EEeCCCC--CCHHHHHHHHHHHHHH
Confidence            9999999  9999999999876654

>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}

Probab=98.28  E-value=8.2e-07  Score=85.83  Aligned_cols=67  Identities=25%  Similarity=0.243  Sum_probs=45.9

Q ss_pred             CcceEEEEeCCCCCChHHHHHHHhCCC--CCCC-----------------------CceecCCCCCceeEeeeeEEecCC
Q psy15351        166 VYNTTVMVVGVPNVGKSSIINALRSSH--MKKG-----------------------KAVPVGPKAGVTRSVMSQVKISEK  220 (352)
Q Consensus       166 ~~~~~v~i~G~pnvGKStliN~l~~~~--~~~~-----------------------~~~~~~~~pg~T~~~~~~~~~~~~  220 (352)
                      ...++|+++|.+|+|||||+|+|....  +...                       ........+|+|.+.........+
T Consensus        15 k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~~   94 (439)
T 3j2k_7           15 KEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETEK   94 (439)
T ss_pred             CceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecCC
Confidence            456899999999999999999996421  0000                       001122347889887654444556


Q ss_pred             CcEEEEeCCCCC
Q psy15351        221 PLIYILDTPGIS  232 (352)
Q Consensus       221 ~~~~l~DtPGi~  232 (352)
                      ..+.++||||..
T Consensus        95 ~~~~iiDTPGh~  106 (439)
T 3j2k_7           95 KHFTILDAPGHK  106 (439)
T ss_pred             eEEEEEECCChH
Confidence            689999999964

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}

Probab=98.28  E-value=1.6e-06  Score=80.50  Aligned_cols=92  Identities=18%  Similarity=0.093  Sum_probs=64.0

Q ss_pred             HHHhhccCEEEEEEcCCCCCCCcC--HHHHHHHh----CCCCEEEEEEcccCCCccchHHHHHHHHhhcCC--CCcEEEe
Q psy15351          9 EKHLKNVDIVIEVHDSRMPFTGRN--HLLQQSVQ----NIRPMVLVLNKRDLINSKHESLIEEKVRKEQSH--ISEVIFT   80 (352)
Q Consensus         9 ~~~i~~aD~vl~VvDar~p~~~~~--~~l~~~l~----~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~--~~~v~~i   80 (352)
                      ...+..+|++|+|+|+.++.+...  ..+..++.    .+.|+++|+||+|+.+.....++.+.+......  ..+++.+
T Consensus       227 ~~~~~~ad~vilV~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~v  306 (329)
T 3o47_A          227 RHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQAT  306 (329)
T ss_dssp             HHHHTTEEEEEEEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTCTTCCSSCEEEEEC
T ss_pred             HHHhccCCEEEEEEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCcccCHHHHHHHhchhhhhcCCCEEEEE
Confidence            456789999999999987543221  23333333    378999999999998766555555544222111  1148899


Q ss_pred             ecCCCCCCCHHHHHHHHHHHhh
Q psy15351         81 NCRNPNCKGVQKILPTLQHISD  102 (352)
Q Consensus        81 Sa~~~~~~gi~~L~~~i~~~~~  102 (352)
                      ||+++  .|+++++++|.+.+.
T Consensus       307 SAk~g--~gi~el~~~l~~~l~  326 (329)
T 3o47_A          307 CATSG--DGLYEGLDWLSNQLR  326 (329)
T ss_dssp             BTTTT--BTHHHHHHHHHHHHT
T ss_pred             ECCCC--cCHHHHHHHHHHHHH
Confidence            99999  999999999987664

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=98.28  E-value=6.5e-07  Score=76.64  Aligned_cols=58  Identities=17%  Similarity=0.243  Sum_probs=37.0

Q ss_pred             cceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCCcEEEEeCCCCCC
Q psy15351        167 YNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISL  233 (352)
Q Consensus       167 ~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~~  233 (352)
                      +.++|+++|.+|||||||+|++.+.     ......++.|.+...   +.. ++..+.++||||...
T Consensus        24 ~~~ki~lvG~~~vGKSsLi~~l~~~-----~~~~~~~t~~~~~~~---~~~-~~~~l~i~Dt~G~~~   81 (198)
T 1f6b_A           24 KTGKLVFLGLDNAGKTTLLHMLKDD-----RLGQHVPTLHPTSEE---LTI-AGMTFTTFDLGGHIQ   81 (198)
T ss_dssp             CCEEEEEEEETTSSHHHHHHHHSCC-----------CCCCCSCEE---EEE-TTEEEEEEEECC---
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhcC-----CCCccCCCCCceeEE---EEE-CCEEEEEEECCCcHh
Confidence            4578999999999999999999863     333344555554322   222 335789999999654

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=98.27  E-value=1.7e-07  Score=79.51  Aligned_cols=61  Identities=21%  Similarity=0.317  Sum_probs=40.1

Q ss_pred             CcceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEec-CCCcEEEEeCCCC
Q psy15351        166 VYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKIS-EKPLIYILDTPGI  231 (352)
Q Consensus       166 ~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~-~~~~~~l~DtPGi  231 (352)
                      ...++|+++|.+|||||||+|+|.+...    .....+..|++..... +... ....+.++||||.
T Consensus        21 ~~~~ki~v~G~~~~GKSsli~~l~~~~~----~~~~~~t~~~~~~~~~-~~~~~~~~~~~i~Dt~G~   82 (191)
T 3dz8_A           21 DYMFKLLIIGNSSVGKTSFLFRYADDTF----TPAFVSTVGIDFKVKT-VYRHEKRVKLQIWDTAGQ   82 (191)
T ss_dssp             EECEEEEEEESTTSSHHHHHHHHHHHTT----CCCEEEEETTTEEEEE-EEETTTTEEEEEECHHHH
T ss_pred             CeeeEEEEECCCCcCHHHHHHHHhcCCC----CcccCCCeeeEEEEEE-EEECCEEEEEEEEeCCCh
Confidence            4679999999999999999999996321    1222233454444322 2222 2235899999993

>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}

Probab=98.27  E-value=6.3e-07  Score=90.09  Aligned_cols=69  Identities=22%  Similarity=0.300  Sum_probs=46.6

Q ss_pred             cCcceEEEEeCCCCCChHHHHHHHhCCCCCCCC---------ceecC----------------CCCCceeEeeeeEEecC
Q psy15351        165 EVYNTTVMVVGVPNVGKSSIINALRSSHMKKGK---------AVPVG----------------PKAGVTRSVMSQVKISE  219 (352)
Q Consensus       165 ~~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~---------~~~~~----------------~~pg~T~~~~~~~~~~~  219 (352)
                      ..+.++|+++|.+|+|||||+|+|++....-..         ....+                ..+|+|.+.........
T Consensus       164 ~k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~  243 (611)
T 3izq_1          164 ALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTH  243 (611)
T ss_dssp             CCCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECS
T ss_pred             cCCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecC
Confidence            356799999999999999999999863110000         00000                13788888765444445


Q ss_pred             CCcEEEEeCCCCCC
Q psy15351        220 KPLIYILDTPGISL  233 (352)
Q Consensus       220 ~~~~~l~DtPGi~~  233 (352)
                      +..+.|+||||...
T Consensus       244 ~~~~~iiDTPG~e~  257 (611)
T 3izq_1          244 RANFTIVDAPGHRD  257 (611)
T ss_dssp             SCEEEEEECCSSSC
T ss_pred             CceEEEEECCCCcc
Confidence            66899999999743

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=98.27  E-value=3.3e-07  Score=76.93  Aligned_cols=61  Identities=16%  Similarity=0.182  Sum_probs=24.5

Q ss_pred             cceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCC--CcEEEEeCCCCCC
Q psy15351        167 YNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEK--PLIYILDTPGISL  233 (352)
Q Consensus       167 ~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~--~~~~l~DtPGi~~  233 (352)
                      ..++|+++|.+|||||||+|++.+.      .......|.++.+.........+  ..+.++||||...
T Consensus         7 ~~~ki~v~G~~~~GKssl~~~l~~~------~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~   69 (183)
T 2fu5_C            7 YLFKLLLIGDSGVGKTCVLFRFSED------AFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQER   69 (183)
T ss_dssp             EEEEEEEECCCCC----------------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC-----
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhC------CCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChh
Confidence            4689999999999999999999852      12222334444443321111222  3588999999643

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=98.27  E-value=1.1e-06  Score=75.62  Aligned_cols=61  Identities=23%  Similarity=0.390  Sum_probs=38.4

Q ss_pred             CcceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeee-eEEecCC-CcEEEEeCCCCC
Q psy15351        166 VYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMS-QVKISEK-PLIYILDTPGIS  232 (352)
Q Consensus       166 ~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~-~~~~~~~-~~~~l~DtPGi~  232 (352)
                      ...++|+++|.+|||||||+|+|.+..      ......|..+.+... .+...+. -.+.++||||..
T Consensus        24 ~~~~ki~lvG~~~vGKSsLi~~l~~~~------~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~   86 (201)
T 2ew1_A           24 DFLFKIVLIGNAGVGKTCLVRRFTQGL------FPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQE   86 (201)
T ss_dssp             SEEEEEEEEESTTSSHHHHHHHHHHSS------CCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSG
T ss_pred             ccceEEEEECcCCCCHHHHHHHHHhCC------CCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcH
Confidence            356899999999999999999998631      122222333333222 2222221 258899999953

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=98.26  E-value=9.4e-07  Score=74.77  Aligned_cols=61  Identities=25%  Similarity=0.389  Sum_probs=39.4

Q ss_pred             CcceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCCcEEEEeCCCCCC
Q psy15351        166 VYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISL  233 (352)
Q Consensus       166 ~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~~  233 (352)
                      .+.++|+++|.+|||||||+|+|.+...   ......++.|.+..   .+ ...+..+.++||||...
T Consensus        19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~---~~~~~~~t~~~~~~---~~-~~~~~~~~l~Dt~G~~~   79 (190)
T 2h57_A           19 SKEVHVLCLGLDNSGKTTIINKLKPSNA---QSQNILPTIGFSIE---KF-KSSSLSFTVFDMSGQGR   79 (190)
T ss_dssp             --CEEEEEEECTTSSHHHHHHHTSCGGG---CCSSCCCCSSEEEE---EE-ECSSCEEEEEEECCSTT
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCC---CCCCcCCccceeEE---EE-EECCEEEEEEECCCCHH
Confidence            4579999999999999999999986310   11223333343322   22 22345799999999654

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=98.26  E-value=9.4e-07  Score=72.24  Aligned_cols=59  Identities=32%  Similarity=0.373  Sum_probs=36.5

Q ss_pred             ceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeee-eEEecCC-CcEEEEeCCCCCC
Q psy15351        168 NTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMS-QVKISEK-PLIYILDTPGISL  233 (352)
Q Consensus       168 ~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~-~~~~~~~-~~~~l~DtPGi~~  233 (352)
                      .++|+++|.+|||||||+|++.+...       ....++++..... .+...+. ..+.++||||...
T Consensus         3 ~~~i~v~G~~~~GKssl~~~l~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~   63 (166)
T 2ce2_X            3 EYKLVVVGAGGVGKSALTIQLIQNHF-------VDECDPTIEDSYRKQVVIDGETCLLDILDTAGQEE   63 (166)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSSC-------CSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCSS
T ss_pred             eeEEEEECCCCCCHHHHHHHHHhCcC-------ccccCCccceEEEEEEEECCEEEEEEEEECCCchh
Confidence            47899999999999999999986311       1122223222211 2222221 2478899999754

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=98.26  E-value=7.6e-07  Score=74.26  Aligned_cols=62  Identities=18%  Similarity=0.274  Sum_probs=34.8

Q ss_pred             CcceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCC--CcEEEEeCCCCC
Q psy15351        166 VYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEK--PLIYILDTPGIS  232 (352)
Q Consensus       166 ~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~--~~~~l~DtPGi~  232 (352)
                      ...++|+++|.+|||||||+|+|.+...    .....+..|.+.... .+...++  ..+.++||||..
T Consensus         6 ~~~~~i~v~G~~~~GKSsli~~l~~~~~----~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~Dt~G~~   69 (182)
T 1ky3_A            6 KNILKVIILGDSGVGKTSLMHRYVNDKY----SQQYKATIGADFLTK-EVTVDGDKVATMQVWDTAGQE   69 (182)
T ss_dssp             -CEEEEEEECCTTSSHHHHHHHHHHSCC----CTTC---CCCSCEEE-EECCSSSCCEEEEEECCC---
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHhCcC----CcccCCccceEEEEE-EEEEcCCcEEEEEEEECCCCh
Confidence            3568999999999999999999986321    111222222222211 2222212  257899999954

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=98.26  E-value=9.7e-07  Score=75.52  Aligned_cols=62  Identities=19%  Similarity=0.233  Sum_probs=37.7

Q ss_pred             CcceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeee-eEEec-CCCcEEEEeCCCCCCC
Q psy15351        166 VYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMS-QVKIS-EKPLIYILDTPGISLP  234 (352)
Q Consensus       166 ~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~-~~~~~-~~~~~~l~DtPGi~~~  234 (352)
                      .+.++|+++|.+|||||||+|+|.+.     ...  ...+.++..... .+... ....+.++||||....
T Consensus        22 ~~~~ki~vvG~~~~GKSsli~~l~~~-----~~~--~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~   85 (201)
T 3oes_A           22 VRYRKVVILGYRCVGKTSLAHQFVEG-----EFS--EGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEY   85 (201)
T ss_dssp             -CEEEEEEEESTTSSHHHHHHHHHHS-----CCC--SCCCCCSEEEEEEEEC----CEEEEEEEECCCCTT
T ss_pred             CCcEEEEEECCCCcCHHHHHHHHHhC-----CCC--CCCCCccceEEEEEEEECCEEEEEEEEECCCccch
Confidence            45799999999999999999999963     211  222222222111 12111 1225789999997643

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=98.26  E-value=1.4e-06  Score=74.13  Aligned_cols=62  Identities=23%  Similarity=0.270  Sum_probs=38.0

Q ss_pred             CcceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecC-CCcEEEEeCCCCCC
Q psy15351        166 VYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISE-KPLIYILDTPGISL  233 (352)
Q Consensus       166 ~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~-~~~~~l~DtPGi~~  233 (352)
                      ...++|+++|.+|||||||+|+|.+...    .....+..+++.  ...+.... ...+.++||||...
T Consensus        26 ~~~~ki~v~G~~~vGKSsli~~l~~~~~----~~~~~~t~~~~~--~~~~~~~~~~~~~~l~Dt~G~~~   88 (196)
T 2atv_A           26 SAEVKLAIFGRAGVGKSALVVRFLTKRF----IWEYDPTLESTY--RHQATIDDEVVSMEILDTAGQED   88 (196)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHHSCC----CSCCCTTCCEEE--EEEEEETTEEEEEEEEECCCCCC
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhCCC----CcccCCCCCceE--EEEEEECCEEEEEEEEECCCCCc
Confidence            4569999999999999999999996321    111112222211  11122222 12588999999875

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=98.25  E-value=4.5e-07  Score=75.55  Aligned_cols=64  Identities=14%  Similarity=0.254  Sum_probs=39.0

Q ss_pred             CcceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCC--CcEEEEeCCCCCCC
Q psy15351        166 VYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEK--PLIYILDTPGISLP  234 (352)
Q Consensus       166 ~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~--~~~~l~DtPGi~~~  234 (352)
                      ...++|+++|.+|||||||+|+|.+...    .....+..|..... ..+...++  ..+.++||||....
T Consensus         4 ~~~~ki~v~G~~~~GKssl~~~l~~~~~----~~~~~~t~~~~~~~-~~~~~~~~~~~~~~~~Dt~G~~~~   69 (178)
T 2hxs_A            4 MRQLKIVVLGDGASGKTSLTTCFAQETF----GKQYKQTIGLDFFL-RRITLPGNLNVTLQIWDIGGQTIG   69 (178)
T ss_dssp             CCEEEEEEECCTTSSHHHHHHHHHGGGT----THHHHHTTTSSEEE-EEEEETTTEEEEEEEEECTTCCTT
T ss_pred             CceEEEEEECcCCCCHHHHHHHHHhCcC----CCCCCCceeEEEEE-EEEEeCCCCEEEEEEEECCCCccc
Confidence            3568999999999999999999996311    11112222221111 12222221  36899999997543

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=98.25  E-value=1.4e-06  Score=73.96  Aligned_cols=60  Identities=20%  Similarity=0.246  Sum_probs=37.5

Q ss_pred             CcceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCC--cEEEEeCCCCC
Q psy15351        166 VYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKP--LIYILDTPGIS  232 (352)
Q Consensus       166 ~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~--~~~l~DtPGi~  232 (352)
                      ...++|+++|.+|||||||+|++.+...       ......|+...........+.  .+.++||||..
T Consensus        21 ~~~~ki~~vG~~~~GKSsl~~~l~~~~~-------~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~   82 (194)
T 3reg_A           21 KKALKIVVVGDGAVGKTCLLLAFSKGEI-------PTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQE   82 (194)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHSCC-------CSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSG
T ss_pred             ceeeEEEEECcCCCCHHHHHHHHhcCCC-------CCccCCeeeeeeEEEEEECCEEEEEEEEECCCcH
Confidence            4569999999999999999999996321       122222322222111222222  35899999954

>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}

Probab=98.24  E-value=3.8e-06  Score=82.90  Aligned_cols=53  Identities=23%  Similarity=0.246  Sum_probs=41.8

Q ss_pred             HHHHHHhhccCEEEEEEcCCCCCCCcCHHHHHHHh-CCCCEEEEEEcccCCCcc
Q psy15351          6 KDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQ-NIRPMVLVLNKRDLINSK   58 (352)
Q Consensus         6 ~~~~~~i~~aD~vl~VvDar~p~~~~~~~l~~~l~-~~k~~ilVlNK~Dl~~~~   58 (352)
                      ..+...+..+|.+|+|+|+..+.......+...+. .+.|+++|+||+|+....
T Consensus        97 ~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~~~~~~~iPiivviNK~Dl~~~~  150 (528)
T 3tr5_A           97 EDTYRTLTAVDSALMVIDAAKGVEPRTIKLMEVCRLRHTPIMTFINKMDRDTRP  150 (528)
T ss_dssp             HHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHHTTTCCEEEEEECTTSCCSC
T ss_pred             HHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEeCCCCcccc
Confidence            45678899999999999999877665555554444 688999999999997543

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=98.23  E-value=3.7e-07  Score=81.83  Aligned_cols=81  Identities=23%  Similarity=0.260  Sum_probs=57.7

Q ss_pred             hccCEEEEEEcCCCCCCCcCHHHHHHHh-CCCCEEEEEEcccCCCccchHHHHHHH-HhhcCCCCcEEEeecCCCCCCCH
Q psy15351         13 KNVDIVIEVHDSRMPFTGRNHLLQQSVQ-NIRPMVLVLNKRDLINSKHESLIEEKV-RKEQSHISEVIFTNCRNPNCKGV   90 (352)
Q Consensus        13 ~~aD~vl~VvDar~p~~~~~~~l~~~l~-~~k~~ilVlNK~Dl~~~~~~~~~~~~~-~~~~~~~~~v~~iSa~~~~~~gi   90 (352)
                      ..+|++++|+|+.++  ..+..+...+. .+.|+++|+||+|+..........+.+ +..+.+   ++.+||+++  .|+
T Consensus        82 ~~~d~vi~VvDas~~--~~~~~l~~~l~~~~~pvilv~NK~Dl~~~~~~~~~~~~l~~~lg~~---vi~~SA~~g--~gi  154 (256)
T 3iby_A           82 LEYDCIINVIDACHL--ERHLYLTSQLFELGKPVVVALNMMDIAEHRGISIDTEKLESLLGCS---VIPIQAHKN--IGI  154 (256)
T ss_dssp             SCCSEEEEEEEGGGH--HHHHHHHHHHTTSCSCEEEEEECHHHHHHTTCEECHHHHHHHHCSC---EEECBGGGT--BSH
T ss_pred             CCCCEEEEEeeCCCc--hhHHHHHHHHHHcCCCEEEEEEChhcCCcCCcHHHHHHHHHHcCCC---EEEEECCCC--CCH
Confidence            889999999999863  22233333343 679999999999987543211111222 234665   999999999  999


Q ss_pred             HHHHHHHHHH
Q psy15351         91 QKILPTLQHI  100 (352)
Q Consensus        91 ~~L~~~i~~~  100 (352)
                      +++++++.+.
T Consensus       155 ~el~~~i~~~  164 (256)
T 3iby_A          155 PALQQSLLHC  164 (256)
T ss_dssp             HHHHHHHHTC
T ss_pred             HHHHHHHHhh
Confidence            9999999876

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=98.23  E-value=1.9e-06  Score=73.42  Aligned_cols=90  Identities=14%  Similarity=0.117  Sum_probs=60.5

Q ss_pred             HHhhccCEEEEEEcCCCCCCCcCH--HHHHHHh---CCCCEEEEEEcccCCCcc--------------chHHHHHHHHhh
Q psy15351         10 KHLKNVDIVIEVHDSRMPFTGRNH--LLQQSVQ---NIRPMVLVLNKRDLINSK--------------HESLIEEKVRKE   70 (352)
Q Consensus        10 ~~i~~aD~vl~VvDar~p~~~~~~--~l~~~l~---~~k~~ilVlNK~Dl~~~~--------------~~~~~~~~~~~~   70 (352)
                      ..+.++|++++|+|+.++.+..+.  .+...+.   .+.|+++|+||+|+.+..              ...+..++....
T Consensus        87 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  166 (201)
T 2q3h_A           87 LCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEI  166 (201)
T ss_dssp             GGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHH
T ss_pred             hhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhc
Confidence            357889999999999876432221  1222222   478999999999997531              112233333334


Q ss_pred             cCCCCcEEEeecCCCCCCCHHHHHHHHHHHhhh
Q psy15351         71 QSHISEVIFTNCRNPNCKGVQKILPTLQHISDN  103 (352)
Q Consensus        71 ~~~~~~v~~iSa~~~~~~gi~~L~~~i~~~~~~  103 (352)
                      +..  +++.+||+++  .|++++++++.+.+..
T Consensus       167 ~~~--~~~~~Sa~~g--~gi~~l~~~l~~~~~~  195 (201)
T 2q3h_A          167 KAA--SYIECSALTQ--KNLKEVFDAAIVAGIQ  195 (201)
T ss_dssp             TCS--EEEECCTTTC--TTHHHHHHHHHHHHHH
T ss_pred             CCc--EEEEEecCCC--CCHHHHHHHHHHHHhc
Confidence            442  4899999999  9999999998776543

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=98.23  E-value=1.2e-06  Score=74.59  Aligned_cols=59  Identities=20%  Similarity=0.303  Sum_probs=36.2

Q ss_pred             CcceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCCcEEEEeCCCCCC
Q psy15351        166 VYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISL  233 (352)
Q Consensus       166 ~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~~  233 (352)
                      .+.++|+++|.+|||||||+|++.+.     ......++.|.+..   .+ ...+..+.++||||...
T Consensus        27 ~~~~ki~v~G~~~vGKSsLi~~l~~~-----~~~~~~~t~~~~~~---~~-~~~~~~~~i~Dt~G~~~   85 (192)
T 2b6h_A           27 KKQMRILMVGLDAAGKTTILYKLKLG-----EIVTTIPTIGFNVE---TV-EYKNICFTVWDVGGQDK   85 (192)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHCSS-----CCEEEEEETTEEEE---EE-EETTEEEEEEECC----
T ss_pred             CCccEEEEECCCCCCHHHHHHHHHhC-----CccccCCcCceeEE---EE-EECCEEEEEEECCCCHh
Confidence            45799999999999999999999862     22222222222211   12 22345689999999854

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=98.23  E-value=1.4e-06  Score=74.49  Aligned_cols=89  Identities=13%  Similarity=0.003  Sum_probs=52.2

Q ss_pred             HHHhhccCEEEEEEcCCCCCCCcC-HHHH-HHHh------CCCCEEEEEEcccCCC-ccc--hHHHHHHHHhhcCCCCcE
Q psy15351          9 EKHLKNVDIVIEVHDSRMPFTGRN-HLLQ-QSVQ------NIRPMVLVLNKRDLIN-SKH--ESLIEEKVRKEQSHISEV   77 (352)
Q Consensus         9 ~~~i~~aD~vl~VvDar~p~~~~~-~~l~-~~l~------~~k~~ilVlNK~Dl~~-~~~--~~~~~~~~~~~~~~~~~v   77 (352)
                      ...+..+|++|+|+|+.++.+... ..+. .+..      .+.|+++|+||+|+.+ ...  .++..++.++.+..   +
T Consensus        91 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~---~  167 (208)
T 2yc2_C           91 SQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTNTLD---F  167 (208)
T ss_dssp             STTCCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHHHHTTCE---E
T ss_pred             HHHHhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHHHHcCCE---E
Confidence            345788999999999987642211 1111 2211      2679999999999987 322  34455555555654   9


Q ss_pred             EEeecCC-CCCCCHHHHHHHHHHHhh
Q psy15351         78 IFTNCRN-PNCKGVQKILPTLQHISD  102 (352)
Q Consensus        78 ~~iSa~~-~~~~gi~~L~~~i~~~~~  102 (352)
                      +.+||++ +  .|+++++++|.+.+.
T Consensus       168 ~~~Sa~~~~--~gi~~l~~~i~~~~~  191 (208)
T 2yc2_C          168 FDVSANPPG--KDADAPFLSIATTFY  191 (208)
T ss_dssp             EECCC---------CHHHHHHHHHHH
T ss_pred             EEeccCCCC--cCHHHHHHHHHHHHH
Confidence            9999999 9  999999999887654

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=98.23  E-value=1.5e-06  Score=74.92  Aligned_cols=90  Identities=18%  Similarity=0.134  Sum_probs=61.7

Q ss_pred             HHhhccCEEEEEEcCCCCCCCcCH--HHHHHHh---CCCCEEEEEEcccCCCccc----------hHHHHHHHHhhcCCC
Q psy15351         10 KHLKNVDIVIEVHDSRMPFTGRNH--LLQQSVQ---NIRPMVLVLNKRDLINSKH----------ESLIEEKVRKEQSHI   74 (352)
Q Consensus        10 ~~i~~aD~vl~VvDar~p~~~~~~--~l~~~l~---~~k~~ilVlNK~Dl~~~~~----------~~~~~~~~~~~~~~~   74 (352)
                      ..+..+|++|+|+|+.++.+..+.  .+...+.   .+.|+++|+||+|+.+...          ..+..++..+.+.. 
T Consensus        76 ~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-  154 (212)
T 2j0v_A           76 LSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAA-  154 (212)
T ss_dssp             GGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHHTCS-
T ss_pred             hhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHcCCc-
Confidence            357889999999999875432211  1222222   3789999999999976432          22333333444542 


Q ss_pred             CcEEEeecCCCCCCCHHHHHHHHHHHhhh
Q psy15351         75 SEVIFTNCRNPNCKGVQKILPTLQHISDN  103 (352)
Q Consensus        75 ~~v~~iSa~~~~~~gi~~L~~~i~~~~~~  103 (352)
                       +++.+||+++  .|++++++++.+.+..
T Consensus       155 -~~~~~Sa~~g--~gi~~l~~~l~~~~~~  180 (212)
T 2j0v_A          155 -AYIECSSKTQ--QNVKAVFDTAIKVVLQ  180 (212)
T ss_dssp             -EEEECCTTTC--TTHHHHHHHHHHHHHC
T ss_pred             -eEEEccCCCC--CCHHHHHHHHHHHHhh
Confidence             4899999999  9999999998876654

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=98.23  E-value=1.1e-06  Score=73.38  Aligned_cols=60  Identities=17%  Similarity=0.206  Sum_probs=39.0

Q ss_pred             cceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCC-CcEEEEeCCCCCC
Q psy15351        167 YNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEK-PLIYILDTPGISL  233 (352)
Q Consensus       167 ~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~-~~~~l~DtPGi~~  233 (352)
                      +.++|+++|.+|||||||+|++.+.     ......++.|.+..  ..+...+. -.+.++||||...
T Consensus         6 ~~~ki~~vG~~~vGKTsli~~l~~~-----~~~~~~~t~~~~~~--~~~~~~~~~~~l~i~Dt~G~~~   66 (178)
T 2iwr_A            6 PELRLGVLGDARSGKSSLIHRFLTG-----SYQVLEKTESEQYK--KEMLVDGQTHLVLIREEAGAPD   66 (178)
T ss_dssp             CEEEEEEECCGGGCHHHHHHHHHHS-----CCCCCSSCSSSEEE--EEEEETTEEEEEEEEECSSSCC
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhC-----CCCCcCCCcceeEE--EEEEECCEEEEEEEEECCCCch
Confidence            4689999999999999999999973     22223344443321  12222221 2478899999754

>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}

Probab=98.23  E-value=4.4e-06  Score=80.72  Aligned_cols=91  Identities=9%  Similarity=0.008  Sum_probs=59.8

Q ss_pred             hHHHHHHHHhhccCEEEEEEcCCCCCC-------CcCHHHHHHHh-CCCC-EEEEEEcccCCCcc----c----hHHHHH
Q psy15351          3 RGLKDIEKHLKNVDIVIEVHDSRMPFT-------GRNHLLQQSVQ-NIRP-MVLVLNKRDLINSK----H----ESLIEE   65 (352)
Q Consensus         3 ~~~~~~~~~i~~aD~vl~VvDar~p~~-------~~~~~l~~~l~-~~k~-~ilVlNK~Dl~~~~----~----~~~~~~   65 (352)
                      +..+.+...+..+|++|+|+|++.+..       ....+....+. .+.| +++|+||+|+.+.+    .    .++..+
T Consensus       107 ~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~~v~~iIvviNK~Dl~~~~~~~~~~~~i~~~~~~  186 (439)
T 3j2k_7          107 SFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVNWSNERYEECKEKLVP  186 (439)
T ss_pred             HHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHHcCCCeEEEEeecCCCcccchHHHHHHHHHHHHHH
Confidence            456677788899999999999998754       12222222222 4666 89999999997532    1    122333


Q ss_pred             HHHhhcCC---CCcEEEeecCCCCCCCHHHHHH
Q psy15351         66 KVRKEQSH---ISEVIFTNCRNPNCKGVQKILP   95 (352)
Q Consensus        66 ~~~~~~~~---~~~v~~iSa~~~~~~gi~~L~~   95 (352)
                      ++++.++.   ..+++++||+++  .|+.++.+
T Consensus       187 ~l~~~g~~~~~~~~~i~iSA~~G--~ni~~l~~  217 (439)
T 3j2k_7          187 FLKKVGFNPKKDIHFMPCSGLTG--ANLKEQSD  217 (439)
T ss_pred             HHHHhcccccCCeeEEEeeccCC--cccccccc
Confidence            44444432   125899999999  99998543

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=98.22  E-value=2.4e-06  Score=80.27  Aligned_cols=24  Identities=29%  Similarity=0.511  Sum_probs=22.0

Q ss_pred             eEEEEeCCCCCChHHHHHHHhCCC
Q psy15351        169 TTVMVVGVPNVGKSSIINALRSSH  192 (352)
Q Consensus       169 ~~v~i~G~pnvGKStliN~l~~~~  192 (352)
                      .+|+++|.+|+|||||+|+|.+..
T Consensus        35 p~I~vvG~~~sGKSSLln~l~g~~   58 (360)
T 3t34_A           35 PAIAVVGGQSSGKSSVLESIVGKD   58 (360)
T ss_dssp             CEEEEECBTTSSHHHHHHHHHTSC
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCC
Confidence            489999999999999999999853

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=98.22  E-value=1.2e-06  Score=76.43  Aligned_cols=89  Identities=17%  Similarity=0.070  Sum_probs=58.6

Q ss_pred             HHhhccCEEEEEEcCCCCCCCcC-HH-HHHHHh---CCCCEEEEEEcccCCCccc--hHHHHHHHHhhcCCCCcEEEeec
Q psy15351         10 KHLKNVDIVIEVHDSRMPFTGRN-HL-LQQSVQ---NIRPMVLVLNKRDLINSKH--ESLIEEKVRKEQSHISEVIFTNC   82 (352)
Q Consensus        10 ~~i~~aD~vl~VvDar~p~~~~~-~~-l~~~l~---~~k~~ilVlNK~Dl~~~~~--~~~~~~~~~~~~~~~~~v~~iSa   82 (352)
                      ..+..+|++|+|+|+.++.+..+ .. +..+..   .+.|+++|+||+|+.+...  ..+..++....+..   ++.+||
T Consensus        81 ~~~~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~---~~~~Sa  157 (223)
T 3cpj_B           81 AYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHLRAVPTEESKTFAQENQLL---FTETSA  157 (223)
T ss_dssp             GGTTTCCEEEEEEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGGGGCCSCHHHHHHHHHHTTCE---EEECCC
T ss_pred             HHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCE---EEEEeC
Confidence            45788999999999987643221 11 111111   3689999999999976432  23444444445554   889999


Q ss_pred             CCCCCCCHHHHHHHHHHHhhh
Q psy15351         83 RNPNCKGVQKILPTLQHISDN  103 (352)
Q Consensus        83 ~~~~~~gi~~L~~~i~~~~~~  103 (352)
                      +++  .|+++++++|.+.+..
T Consensus       158 ~~~--~gi~~l~~~l~~~i~~  176 (223)
T 3cpj_B          158 LNS--ENVDKAFEELINTIYQ  176 (223)
T ss_dssp             C-C--CCHHHHHHHHHHHHTT
T ss_pred             CCC--CCHHHHHHHHHHHHHH
Confidence            999  9999999999876654

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=98.22  E-value=1.3e-06  Score=75.82  Aligned_cols=90  Identities=13%  Similarity=0.051  Sum_probs=61.7

Q ss_pred             HHhhccCEEEEEEcCCCCCCCcC--HHHHHHHh---CCCCEEEEEEcccCCCc--------------cchHHHHHHHHhh
Q psy15351         10 KHLKNVDIVIEVHDSRMPFTGRN--HLLQQSVQ---NIRPMVLVLNKRDLINS--------------KHESLIEEKVRKE   70 (352)
Q Consensus        10 ~~i~~aD~vl~VvDar~p~~~~~--~~l~~~l~---~~k~~ilVlNK~Dl~~~--------------~~~~~~~~~~~~~   70 (352)
                      ..+..+|++|+|+|+.++.+..+  ..+...+.   .+.|+++|.||+|+.+.              ....+..++.++.
T Consensus        94 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  173 (214)
T 3q3j_B           94 LCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQL  173 (214)
T ss_dssp             GGCTTCSEEEEEEETTCTHHHHHHHTHHHHHHHHHCTTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHH
T ss_pred             HHcCCCeEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHHc
Confidence            35788999999999987643222  12222222   47899999999999752              1123334444445


Q ss_pred             cCCCCcEEEeecCCCCCCC-HHHHHHHHHHHhhh
Q psy15351         71 QSHISEVIFTNCRNPNCKG-VQKILPTLQHISDN  103 (352)
Q Consensus        71 ~~~~~~v~~iSa~~~~~~g-i~~L~~~i~~~~~~  103 (352)
                      +..  +++.+||+++  .| ++++++.+.+.+..
T Consensus       174 ~~~--~~~e~SA~~g--~g~v~~lf~~l~~~~~~  203 (214)
T 3q3j_B          174 GAE--IYLEGSAFTS--EKSIHSIFRTASMLCLN  203 (214)
T ss_dssp             TCS--EEEECCTTTC--HHHHHHHHHHHHHHHHC
T ss_pred             CCC--EEEEeccCCC--cccHHHHHHHHHHHHhc
Confidence            652  4899999999  98 99999998876643

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=98.22  E-value=1.6e-06  Score=72.56  Aligned_cols=24  Identities=25%  Similarity=0.386  Sum_probs=22.2

Q ss_pred             cceEEEEeCCCCCChHHHHHHHhC
Q psy15351        167 YNTTVMVVGVPNVGKSSIINALRS  190 (352)
Q Consensus       167 ~~~~v~i~G~pnvGKStliN~l~~  190 (352)
                      ..++|+++|.+|||||||+|++.+
T Consensus         4 ~~~~i~~~G~~~~GKssl~~~l~~   27 (186)
T 1mh1_A            4 QAIKCVVVGDGAVGKTCLLISYTT   27 (186)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHH
T ss_pred             cEEEEEEECCCCCCHHHHHHHHHc
Confidence            468999999999999999999986

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=98.22  E-value=7.1e-07  Score=73.90  Aligned_cols=82  Identities=20%  Similarity=0.208  Sum_probs=54.2

Q ss_pred             hccCEEEEEEcCCCCCCCcCHHHH-HHHhCCCCEEEEEEcccCCCccch-HHHHHHHHhhcCCCCcEEEeecCCCCCCCH
Q psy15351         13 KNVDIVIEVHDSRMPFTGRNHLLQ-QSVQNIRPMVLVLNKRDLINSKHE-SLIEEKVRKEQSHISEVIFTNCRNPNCKGV   90 (352)
Q Consensus        13 ~~aD~vl~VvDar~p~~~~~~~l~-~~l~~~k~~ilVlNK~Dl~~~~~~-~~~~~~~~~~~~~~~~v~~iSa~~~~~~gi   90 (352)
                      ..+|++++|+|+....  ....+. ++.+.+.|+++|.||+|+...... .+..++.+..+.+   ++.+||+++  .|+
T Consensus        80 ~~~~~~i~v~D~~~~~--~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~---~~~~SA~~~--~~v  152 (165)
T 2wji_A           80 EKPDLVVNIVDATALE--RNLYLTLQLMEMGANLLLALNKMDLAKSLGIEIDVDKLEKILGVK---VVPLSAAKK--MGI  152 (165)
T ss_dssp             HCCSEEEEEEETTCHH--HHHHHHHHHHHTTCCEEEEEECHHHHHHTTCCCCHHHHHHHHTSC---EEECBGGGT--BSH
T ss_pred             CCCCEEEEEecCCchh--HhHHHHHHHHhcCCCEEEEEEchHhccccChhhHHHHHHHHhCCC---EEEEEcCCC--CCH
Confidence            4899999999997531  111122 222257899999999998643211 0111222233554   899999999  999


Q ss_pred             HHHHHHHHHHh
Q psy15351         91 QKILPTLQHIS  101 (352)
Q Consensus        91 ~~L~~~i~~~~  101 (352)
                      +++++++.+.+
T Consensus       153 ~~l~~~l~~~~  163 (165)
T 2wji_A          153 EELKKAISIAV  163 (165)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHHh
Confidence            99999987654

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=98.22  E-value=1.2e-06  Score=83.78  Aligned_cols=61  Identities=30%  Similarity=0.304  Sum_probs=47.2

Q ss_pred             cceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCC-CcEEEEeCCCCCC
Q psy15351        167 YNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEK-PLIYILDTPGISL  233 (352)
Q Consensus       167 ~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~-~~~~l~DtPGi~~  233 (352)
                      ..-.|+++|.||+|||||+|+|++      ....+++.|++|..+...+....+ ..+.++||||+..
T Consensus       156 ~g~~VgLVG~~gAGKSTLL~~Lsg------~~~~i~~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~  217 (416)
T 1udx_A          156 LIADVGLVGYPNAGKSSLLAAMTR------AHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIE  217 (416)
T ss_dssp             CSCSEEEECCGGGCHHHHHHHHCS------SCCEECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCC
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHc------CCccccCcccceecceeeEEEecCcceEEEEecccccc
Confidence            345689999999999999999986      334678889998876544333332 5789999999975

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=98.21  E-value=1.6e-06  Score=74.71  Aligned_cols=58  Identities=21%  Similarity=0.331  Sum_probs=38.0

Q ss_pred             cceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecC--CCcEEEEeCCCCC
Q psy15351        167 YNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISE--KPLIYILDTPGIS  232 (352)
Q Consensus       167 ~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~--~~~~~l~DtPGi~  232 (352)
                      ..++|+++|.+|||||||+|++.+.     .  .....+.++.+.. .+....  +..+.++||||..
T Consensus         6 ~~~ki~vvG~~~~GKTsli~~l~~~-----~--~~~~~~~~~~~~~-~~~~~~~~~~~~~i~Dt~G~~   65 (214)
T 2fh5_B            6 SQRAVLFVGLCDSGKTLLFVRLLTG-----Q--YRDTQTSITDSSA-IYKVNNNRGNSLTLIDLPGHE   65 (214)
T ss_dssp             --CEEEEECSTTSSHHHHHHHHHHS-----C--CCCBCCCCSCEEE-EEECSSTTCCEEEEEECCCCH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC-----C--cccccCCcceeeE-EEEecCCCccEEEEEECCCCh
Confidence            4689999999999999999999963     2  1222343443332 233332  3468999999974

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=98.21  E-value=5.1e-06  Score=70.84  Aligned_cols=89  Identities=16%  Similarity=0.037  Sum_probs=61.3

Q ss_pred             HHhhccCEEEEEEcCCCCCCCcC--HHHHHHHh----CCCCEEEEEEcccCCCccc--hHHHHHHHHhhcCCCCcEEEee
Q psy15351         10 KHLKNVDIVIEVHDSRMPFTGRN--HLLQQSVQ----NIRPMVLVLNKRDLINSKH--ESLIEEKVRKEQSHISEVIFTN   81 (352)
Q Consensus        10 ~~i~~aD~vl~VvDar~p~~~~~--~~l~~~l~----~~k~~ilVlNK~Dl~~~~~--~~~~~~~~~~~~~~~~~v~~iS   81 (352)
                      ..+..+|++|+|+|+.++.+...  ..+..+..    .+.|+++|.||+|+.+...  .++..++.+..+..   ++.+|
T Consensus        92 ~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~a~~~~~~---~~e~S  168 (195)
T 3cbq_A           92 HCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCK---HIETS  168 (195)
T ss_dssp             HHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCE---EEEEB
T ss_pred             HhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccccCCcCHHHHHHHHHHhCCE---EEEEc
Confidence            34678999999999987543221  22222222    2689999999999976432  23344444444544   89999


Q ss_pred             cCCCCCCCHHHHHHHHHHHhhh
Q psy15351         82 CRNPNCKGVQKILPTLQHISDN  103 (352)
Q Consensus        82 a~~~~~~gi~~L~~~i~~~~~~  103 (352)
                      |+++  .|++++++.+.+.+..
T Consensus       169 a~~~--~~v~~lf~~l~~~i~~  188 (195)
T 3cbq_A          169 AALH--HNTRELFEGAVRQIRL  188 (195)
T ss_dssp             TTTT--BSHHHHHHHHHHHHHT
T ss_pred             CCCC--CCHHHHHHHHHHHHHH
Confidence            9999  9999999998876653

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=98.21  E-value=2.3e-06  Score=72.39  Aligned_cols=62  Identities=13%  Similarity=0.243  Sum_probs=36.7

Q ss_pred             CcceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeee-eEEecC-CCcEEEEeCCCCCCC
Q psy15351        166 VYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMS-QVKISE-KPLIYILDTPGISLP  234 (352)
Q Consensus       166 ~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~-~~~~~~-~~~~~l~DtPGi~~~  234 (352)
                      ...++|+++|.+|||||||+|++.+.     .  .....+.|+..... ...... .-.+.++||||....
T Consensus        19 ~~~~ki~vvG~~~vGKTsLi~~l~~~-----~--~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~   82 (187)
T 3c5c_A           19 PLEVNLAILGRRGAGKSALTVKFLTK-----R--FISEYDPNLEDTYSSEETVDHQPVHLRVMDTADLDTP   82 (187)
T ss_dssp             -CEEEEEEECCTTSSHHHHHHHHHHS-----S--CCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---C
T ss_pred             CceEEEEEECCCCCcHHHHHHHHHhC-----C--CCcccCCCccceeeEEEEECCEEEEEEEEECCCCCcc
Confidence            45689999999999999999999863     1  11223333332211 122221 125778999997654

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=98.21  E-value=4.6e-06  Score=69.41  Aligned_cols=88  Identities=18%  Similarity=0.185  Sum_probs=58.9

Q ss_pred             HHhhccCEEEEEEcCCCCCCCcC--HHHHHHHh-------CCCCEEEEEEcccCCCccc---hHHHHHHHHh-hcCCCCc
Q psy15351         10 KHLKNVDIVIEVHDSRMPFTGRN--HLLQQSVQ-------NIRPMVLVLNKRDLINSKH---ESLIEEKVRK-EQSHISE   76 (352)
Q Consensus        10 ~~i~~aD~vl~VvDar~p~~~~~--~~l~~~l~-------~~k~~ilVlNK~Dl~~~~~---~~~~~~~~~~-~~~~~~~   76 (352)
                      ..+..+|++++|+|+.++.+...  ..+..+..       .+.|+++|+||+|+.+...   ..+..++... .+.   +
T Consensus        77 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~---~  153 (182)
T 1ky3_A           77 AFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDI---P  153 (182)
T ss_dssp             CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSC---C
T ss_pred             HHhhcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHHhcCCC---e
Confidence            45788999999999987643222  11112211       3679999999999965431   2333333321 234   4


Q ss_pred             EEEeecCCCCCCCHHHHHHHHHHHhh
Q psy15351         77 VIFTNCRNPNCKGVQKILPTLQHISD  102 (352)
Q Consensus        77 v~~iSa~~~~~~gi~~L~~~i~~~~~  102 (352)
                      ++.+||+++  .|+++++++|.+.+.
T Consensus       154 ~~~~Sa~~~--~gi~~l~~~l~~~~~  177 (182)
T 1ky3_A          154 LFLTSAKNA--INVDTAFEEIARSAL  177 (182)
T ss_dssp             EEEEBTTTT--BSHHHHHHHHHHHHH
T ss_pred             EEEEecCCC--CCHHHHHHHHHHHHH
Confidence            899999999  999999999876554

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=98.21  E-value=3.1e-06  Score=71.43  Aligned_cols=87  Identities=14%  Similarity=0.039  Sum_probs=58.9

Q ss_pred             HhhccCEEEEEEcCCCCCCCcC-HHHHH-HHh----CCCCEEEEEEcccCCCcc----chHHHHHHHHhhc-CCCCcEEE
Q psy15351         11 HLKNVDIVIEVHDSRMPFTGRN-HLLQQ-SVQ----NIRPMVLVLNKRDLINSK----HESLIEEKVRKEQ-SHISEVIF   79 (352)
Q Consensus        11 ~i~~aD~vl~VvDar~p~~~~~-~~l~~-~l~----~~k~~ilVlNK~Dl~~~~----~~~~~~~~~~~~~-~~~~~v~~   79 (352)
                      .+..+|++++|+|+.++.+..+ ..+.. +..    .+.|+++|.||+|+....    ..++..++..+.+ .   +++.
T Consensus        82 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~---~~~e  158 (184)
T 3ihw_A           82 FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLSTDLKRC---TYYE  158 (184)
T ss_dssp             HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHTTTC---EEEE
T ss_pred             eecCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHHHHcCCC---eEEE
Confidence            5678999999999987643222 12222 222    257999999999995321    1233444444444 3   4899


Q ss_pred             eecCCCCCCCHHHHHHHHHHHhh
Q psy15351         80 TNCRNPNCKGVQKILPTLQHISD  102 (352)
Q Consensus        80 iSa~~~~~~gi~~L~~~i~~~~~  102 (352)
                      +||+++  .|++++++++.+.+.
T Consensus       159 ~Sa~~~--~gv~~lf~~l~~~i~  179 (184)
T 3ihw_A          159 TCATYG--LNVERVFQDVAQKVV  179 (184)
T ss_dssp             EBTTTT--BTHHHHHHHHHHHHH
T ss_pred             ecCCCC--CCHHHHHHHHHHHHH
Confidence            999999  999999999876554

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=98.21  E-value=1.5e-06  Score=73.52  Aligned_cols=59  Identities=19%  Similarity=0.274  Sum_probs=39.7

Q ss_pred             CcceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCCcEEEEeCCCCC
Q psy15351        166 VYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGIS  232 (352)
Q Consensus       166 ~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~  232 (352)
                      .+.++|+++|.+|||||||+|+|.+..    ......++.|.+...   + ...+..+.++||||..
T Consensus        20 ~~~~ki~v~G~~~~GKSsli~~l~~~~----~~~~~~~t~~~~~~~---~-~~~~~~~~l~Dt~G~~   78 (188)
T 1zd9_A           20 KEEMELTLVGLQYSGKTTFVNVIASGQ----FNEDMIPTVGFNMRK---I-TKGNVTIKLWDIGGQP   78 (188)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHSC----CCCSCCCCCSEEEEE---E-EETTEEEEEEEECCSH
T ss_pred             CCccEEEEECCCCCCHHHHHHHHHcCC----CCCccCCCCceeEEE---E-EeCCEEEEEEECCCCH
Confidence            356899999999999999999999632    111233344443321   1 2234468999999964

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=98.21  E-value=2.4e-06  Score=73.40  Aligned_cols=89  Identities=18%  Similarity=0.231  Sum_probs=59.3

Q ss_pred             HHhhccCEEEEEEcCCCCCCCcC--HHHHHHHh---CCCCEEEEEEcccCCCccchH--------------HHHHHHHhh
Q psy15351         10 KHLKNVDIVIEVHDSRMPFTGRN--HLLQQSVQ---NIRPMVLVLNKRDLINSKHES--------------LIEEKVRKE   70 (352)
Q Consensus        10 ~~i~~aD~vl~VvDar~p~~~~~--~~l~~~l~---~~k~~ilVlNK~Dl~~~~~~~--------------~~~~~~~~~   70 (352)
                      ..+..+|++++|+|+.++.+...  ..+...+.   .+.|+++|+||+|+.+.....              +..++....
T Consensus        92 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  171 (207)
T 2fv8_A           92 LSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRI  171 (207)
T ss_dssp             GGCTTCCEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHT
T ss_pred             hhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhc
Confidence            45788999999999986532211  12222232   378999999999997653211              112222222


Q ss_pred             cCCCCcEEEeecCCCCCCCHHHHHHHHHHHhh
Q psy15351         71 QSHISEVIFTNCRNPNCKGVQKILPTLQHISD  102 (352)
Q Consensus        71 ~~~~~~v~~iSa~~~~~~gi~~L~~~i~~~~~  102 (352)
                      +..  +++.+||+++  .|+++++++|.+.+.
T Consensus       172 ~~~--~~~~~SA~~g--~gi~el~~~l~~~i~  199 (207)
T 2fv8_A          172 QAY--DYLECSAKTK--EGVREVFETATRAAL  199 (207)
T ss_dssp             TCS--EEEECCTTTC--TTHHHHHHHHHHHHH
T ss_pred             CCC--EEEEeeCCCC--CCHHHHHHHHHHHHH
Confidence            331  4889999999  999999999987654

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=98.21  E-value=1.8e-06  Score=73.33  Aligned_cols=62  Identities=23%  Similarity=0.200  Sum_probs=37.5

Q ss_pred             CcceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecC-CCcEEEEeCCCCCC
Q psy15351        166 VYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISE-KPLIYILDTPGISL  233 (352)
Q Consensus       166 ~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~-~~~~~l~DtPGi~~  233 (352)
                      ...++|+++|.+|||||||+|+|.+...    .....+..+.+...  .+.... ...+.++||||...
T Consensus         6 ~~~~ki~vvG~~~~GKSsli~~l~~~~~----~~~~~~t~~~~~~~--~~~~~~~~~~~~l~Dt~G~~~   68 (199)
T 2gf0_A            6 SNDYRVVVFGAGGVGKSSLVLRFVKGTF----RDTYIPTIEDTYRQ--VISCDKSVCTLQITDTTGSHQ   68 (199)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHHSCC----CCTTSCCCCEEEEE--EEEETTEEEEEEEEECCGGGS
T ss_pred             CCeeEEEEECCCCCcHHHHHHHHHcCCC----CCcccCccccceeE--EEEECCEEEEEEEEeCCChHH
Confidence            3568999999999999999999986321    11111222222111  111211 12588999999653

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=98.21  E-value=2.1e-07  Score=84.23  Aligned_cols=86  Identities=17%  Similarity=0.209  Sum_probs=59.3

Q ss_pred             HhhccCEEEEEEcCCCCCCCcCHHHHHHHh-CCCCEEEEEEcccCCCccchHHHHHHH-HhhcCCCCcEEEeecCCCCCC
Q psy15351         11 HLKNVDIVIEVHDSRMPFTGRNHLLQQSVQ-NIRPMVLVLNKRDLINSKHESLIEEKV-RKEQSHISEVIFTNCRNPNCK   88 (352)
Q Consensus        11 ~i~~aD~vl~VvDar~p~~~~~~~l~~~l~-~~k~~ilVlNK~Dl~~~~~~~~~~~~~-~~~~~~~~~v~~iSa~~~~~~   88 (352)
                      ....+|++++|+|+.++  ..+..+...+. .+.|+++|+||+|+.+........+.+ +..+.+   ++.+||+++  .
T Consensus        82 ~~~~~d~ii~VvD~~~~--~~~~~~~~~l~~~~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~lg~~---~i~~SA~~g--~  154 (274)
T 3i8s_A           82 LSGDADLLINVVDASNL--ERNLYLTLQLLELGIPCIVALNMLDIAEKQNIRIEIDALSARLGCP---VIPLVSTRG--R  154 (274)
T ss_dssp             HHTCCSEEEEEEEGGGH--HHHHHHHHHHHHHTCCEEEEEECHHHHHHTTEEECHHHHHHHHTSC---EEECCCGGG--H
T ss_pred             hhcCCCEEEEEecCCCh--HHHHHHHHHHHhcCCCEEEEEECccchhhhhHHHHHHHHHHhcCCC---EEEEEcCCC--C
Confidence            34799999999999863  12222333332 589999999999987543211111222 234665   999999999  9


Q ss_pred             CHHHHHHHHHHHhhh
Q psy15351         89 GVQKILPTLQHISDN  103 (352)
Q Consensus        89 gi~~L~~~i~~~~~~  103 (352)
                      |+++|++++.+.++.
T Consensus       155 gi~el~~~i~~~~~~  169 (274)
T 3i8s_A          155 GIEALKLAIDRYKAN  169 (274)
T ss_dssp             HHHHHHHHHHTCCCC
T ss_pred             CHHHHHHHHHHHHhc
Confidence            999999999876653

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=98.19  E-value=2.2e-06  Score=74.18  Aligned_cols=90  Identities=16%  Similarity=0.134  Sum_probs=58.5

Q ss_pred             HHhhccCEEEEEEcCCCCCCCcCH--HHHHHHh---CCCCEEEEEEcccCCCccch--------------HHHHHHHHhh
Q psy15351         10 KHLKNVDIVIEVHDSRMPFTGRNH--LLQQSVQ---NIRPMVLVLNKRDLINSKHE--------------SLIEEKVRKE   70 (352)
Q Consensus        10 ~~i~~aD~vl~VvDar~p~~~~~~--~l~~~l~---~~k~~ilVlNK~Dl~~~~~~--------------~~~~~~~~~~   70 (352)
                      ..+..+|++++|+|+.++.+....  .+...+.   .+.|+++|+||+|+.+....              .+..++.+..
T Consensus       101 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  180 (214)
T 2j1l_A          101 LFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSV  180 (214)
T ss_dssp             ----CEEEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHT
T ss_pred             HHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhc
Confidence            457899999999999875332111  1222222   47899999999999865321              2223333334


Q ss_pred             cCCCCcEEEeecCCCCCCCHHHHHHHHHHHhhh
Q psy15351         71 QSHISEVIFTNCRNPNCKGVQKILPTLQHISDN  103 (352)
Q Consensus        71 ~~~~~~v~~iSa~~~~~~gi~~L~~~i~~~~~~  103 (352)
                      +..  +++.+||+++  .|+++++++|.+.+.+
T Consensus       181 ~~~--~~~~~SA~~g--~gi~el~~~l~~~~~~  209 (214)
T 2j1l_A          181 GAV--AYLECSARLH--DNVHAVFQEAAEVALS  209 (214)
T ss_dssp             TCS--EEEECBTTTT--BSHHHHHHHHHHHHHH
T ss_pred             CCC--EEEEecCCCC--CCHHHHHHHHHHHHHH
Confidence            442  4899999999  9999999998876543

>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}

Probab=98.19  E-value=6.9e-06  Score=77.49  Aligned_cols=97  Identities=12%  Similarity=0.073  Sum_probs=65.7

Q ss_pred             hHHHHHHHHhhccCEEEEEEcCCCCCCCcCHHHHHHHh-CCCCE-EEEEE-cccCCCccchHHH----HHHHHhhcCCCC
Q psy15351          3 RGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQ-NIRPM-VLVLN-KRDLINSKHESLI----EEKVRKEQSHIS   75 (352)
Q Consensus         3 ~~~~~~~~~i~~aD~vl~VvDar~p~~~~~~~l~~~l~-~~k~~-ilVlN-K~Dl~~~~~~~~~----~~~~~~~~~~~~   75 (352)
                      +.++.+...+..+|++|+|+| +........+...++. .+.|. ++++| |+|+ +++..+..    .+++.+.+....
T Consensus        72 ~f~~~~~~~~~~aD~ailVvd-~~g~~~qt~e~~~~~~~~~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~~~~~~  149 (370)
T 2elf_A           72 KTLKSLITALNISDIAVLCIP-PQGLDAHTGECIIALDLLGFKHGIIALTRSDST-HMHAIDELKAKLKVITSGTVLQDW  149 (370)
T ss_dssp             TCHHHHHHHHHTCSEEEEEEC-TTCCCHHHHHHHHHHHHTTCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTSTTTTC
T ss_pred             HHHHHHHHHHHHCCEEEEEEc-CCCCcHHHHHHHHHHHHcCCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhcCCCce
Confidence            345677788899999999999 7654433333333333 56777 99999 9999 65432322    222322222223


Q ss_pred             cEEE--eecCC---CCCCCHHHHHHHHHHHhhh
Q psy15351         76 EVIF--TNCRN---PNCKGVQKILPTLQHISDN  103 (352)
Q Consensus        76 ~v~~--iSa~~---~~~~gi~~L~~~i~~~~~~  103 (352)
                      ++++  +||++   +  .|+++|++.|.+.++.
T Consensus       150 ~ii~~~~SA~~~~~g--~gi~~L~~~l~~~~~~  180 (370)
T 2elf_A          150 ECISLNTNKSAKNPF--EGVDELKARINEVAEK  180 (370)
T ss_dssp             EEEECCCCTTSSSTT--TTHHHHHHHHHHHHHH
T ss_pred             EEEecccccccCcCC--CCHHHHHHHHHhhccc
Confidence            6899  99999   9  9999999999887654

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=98.19  E-value=1.4e-06  Score=74.60  Aligned_cols=61  Identities=16%  Similarity=0.300  Sum_probs=38.1

Q ss_pred             CcceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCC-CcEEEEeCCCCC
Q psy15351        166 VYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEK-PLIYILDTPGIS  232 (352)
Q Consensus       166 ~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~-~~~~l~DtPGi~  232 (352)
                      ...++|+++|.+|||||||+|++.+...      .....|.++......+...+. -.+.++||||..
T Consensus        23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~------~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~   84 (201)
T 2gco_A           23 AIRKKLVIVGDGACGKTCLLIVFSKDQF------PEVYVPTVFENYIADIEVDGKQVELALWDTAGQE   84 (201)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHHSSC------CSSCCCSSCCCCEEEEEETTEEEEEEEECCCCSG
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHhCcC------CcccCCcccceEEEEEEECCEEEEEEEEECCCch
Confidence            3568999999999999999999996321      111223322222222222221 257899999964

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=98.18  E-value=1.5e-06  Score=74.25  Aligned_cols=90  Identities=17%  Similarity=0.085  Sum_probs=61.0

Q ss_pred             HHhhccCEEEEEEcCCCCCCCcC--HHHHHHHh----CCCCEEEEEEcccCCCccc--hHHHHHHHHhhcCCCCcEEEee
Q psy15351         10 KHLKNVDIVIEVHDSRMPFTGRN--HLLQQSVQ----NIRPMVLVLNKRDLINSKH--ESLIEEKVRKEQSHISEVIFTN   81 (352)
Q Consensus        10 ~~i~~aD~vl~VvDar~p~~~~~--~~l~~~l~----~~k~~ilVlNK~Dl~~~~~--~~~~~~~~~~~~~~~~~v~~iS   81 (352)
                      ..+..+|++++|+|+.++.+...  ..+..+..    .+.|+++|+||+|+.+...  .....++....+..   ++.+|
T Consensus        91 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~---~~~~S  167 (201)
T 3oes_A           91 SFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKKLAESWGAT---FMESS  167 (201)
T ss_dssp             GGTTTCCEEEEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCE---EEECC
T ss_pred             HHHhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHHHHHHHhCCe---EEEEe
Confidence            45678999999999986532211  11112211    2679999999999976543  22333334444554   89999


Q ss_pred             cCCCCCCCHHHHHHHHHHHhhhc
Q psy15351         82 CRNPNCKGVQKILPTLQHISDNM  104 (352)
Q Consensus        82 a~~~~~~gi~~L~~~i~~~~~~~  104 (352)
                      |+++  .|+++++++|.+.+...
T Consensus       168 a~~~--~~v~~l~~~l~~~i~~~  188 (201)
T 3oes_A          168 AREN--QLTQGIFTKVIQEIARV  188 (201)
T ss_dssp             TTCH--HHHHHHHHHHHHHHHHC
T ss_pred             CCCC--CCHHHHHHHHHHHHHhh
Confidence            9999  99999999998766543

>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...

Probab=98.18  E-value=2.2e-06  Score=81.95  Aligned_cols=99  Identities=12%  Similarity=0.054  Sum_probs=68.0

Q ss_pred             hHHHHHHHHhhccCEEEEEEcCCCCCCCcCHHHHHHHh-CCCC-EEEEEEcccCCCc-cch----HHHHHHHHhhcCC--
Q psy15351          3 RGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQ-NIRP-MVLVLNKRDLINS-KHE----SLIEEKVRKEQSH--   73 (352)
Q Consensus         3 ~~~~~~~~~i~~aD~vl~VvDar~p~~~~~~~l~~~l~-~~k~-~ilVlNK~Dl~~~-~~~----~~~~~~~~~~~~~--   73 (352)
                      +..+.+...+..+|++|+|+|++++......++...+. .+.| +++|+||+|+.+. +..    .+..+++.+.++.  
T Consensus        87 ~f~~~~~~~~~~aD~~ilVvda~~g~~~qt~~~l~~~~~~~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~  166 (405)
T 2c78_A           87 DYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFPGD  166 (405)
T ss_dssp             GGHHHHHHHHTTCSSEEEEEETTTCCCHHHHHHHHHHHHTTCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTTSCTT
T ss_pred             HHHHHHHHHHHHCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEECccccCcHHHHHHHHHHHHHHHHHhccccc
Confidence            34567778899999999999999876544433334333 5677 8899999999853 211    2333444444431  


Q ss_pred             CCcEEEeecCCCCCCC------------------HHHHHHHHHHHhhh
Q psy15351         74 ISEVIFTNCRNPNCKG------------------VQKILPTLQHISDN  103 (352)
Q Consensus        74 ~~~v~~iSa~~~~~~g------------------i~~L~~~i~~~~~~  103 (352)
                      ..+++++||+++  .|                  +.+|++.+.+.++.
T Consensus       167 ~~~~i~~SA~~g--~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~lp~  212 (405)
T 2c78_A          167 EVPVIRGSALLA--LEQMHRNPKTRRGENEWVDKIWELLDAIDEYIPT  212 (405)
T ss_dssp             TSCEEECCHHHH--HHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHSCC
T ss_pred             CCCEEEccHHHh--hhhhccccccccCCCcccccHHHHHHHHHhhcCC
Confidence            125999999998  76                  77888888877653

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=98.18  E-value=1.2e-06  Score=74.61  Aligned_cols=61  Identities=16%  Similarity=0.155  Sum_probs=35.1

Q ss_pred             cceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeee-eEEecCCC--cEEEEeCCCCCC
Q psy15351        167 YNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMS-QVKISEKP--LIYILDTPGISL  233 (352)
Q Consensus       167 ~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~-~~~~~~~~--~~~l~DtPGi~~  233 (352)
                      ..++|+++|.||||||||+|++.+.     ....++..+.++.+... .+.+ ++.  .+.++||+|...
T Consensus         5 ~~~kv~lvG~~~vGKSsL~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~Dt~~~~~   68 (192)
T 2cjw_A            5 TYYRVVLIGEQGVGKSTLANIFAGV-----HDSMDSDXEVLGEDTYERTLMV-DGESATIILLDMWENKG   68 (192)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHH-----SCCC----GGGCTTEEEEEEEE-TTEEEEEEEECCCCC--
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcC-----cCCcCccccccceeEEEEEEEE-CCeEEEEEEEEeccCcc
Confidence            3589999999999999999999852     11112222332222211 2222 232  457899999654

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=98.17  E-value=8.3e-07  Score=75.89  Aligned_cols=61  Identities=30%  Similarity=0.394  Sum_probs=18.5

Q ss_pred             cceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCcee-Eeee-eEEecC---CCcEEEEeCCCCC
Q psy15351        167 YNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTR-SVMS-QVKISE---KPLIYILDTPGIS  232 (352)
Q Consensus       167 ~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~-~~~~-~~~~~~---~~~~~l~DtPGi~  232 (352)
                      ..++|+++|.+|||||||+|+|.+.     .....+..+.|+. +... .+...+   ...+.++||||..
T Consensus        19 ~~~~i~v~G~~~~GKssli~~l~~~-----~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~   84 (208)
T 2yc2_C           19 LRCKVAVVGEATVGKSALISMFTSK-----GSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSD   84 (208)
T ss_dssp             EEEEEEEC---------------------------------------CEEEECTTSSEEEEEEEEETTTTH
T ss_pred             cceEEEEECCCCCCHHHHHHHHHhC-----CCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcH
Confidence            4689999999999999999999862     1112223333332 2221 222222   2258999999973

>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*

Probab=98.16  E-value=8.9e-07  Score=86.65  Aligned_cols=68  Identities=21%  Similarity=0.273  Sum_probs=44.4

Q ss_pred             CcceEEEEeCCCCCChHHHHHHHhCCC--CCC-----------------------CCceecCCCCCceeEeeeeEEecCC
Q psy15351        166 VYNTTVMVVGVPNVGKSSIINALRSSH--MKK-----------------------GKAVPVGPKAGVTRSVMSQVKISEK  220 (352)
Q Consensus       166 ~~~~~v~i~G~pnvGKStliN~l~~~~--~~~-----------------------~~~~~~~~~pg~T~~~~~~~~~~~~  220 (352)
                      ...++|+++|.+|+|||||+|+|++..  +..                       .........+|+|.+.........+
T Consensus        31 k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~  110 (483)
T 3p26_A           31 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR  110 (483)
T ss_dssp             CCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSS
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCC
Confidence            467999999999999999999997530  000                       0011233456888876554444455


Q ss_pred             CcEEEEeCCCCCC
Q psy15351        221 PLIYILDTPGISL  233 (352)
Q Consensus       221 ~~~~l~DtPGi~~  233 (352)
                      ..+.|+||||...
T Consensus       111 ~~~~iiDTPG~~~  123 (483)
T 3p26_A          111 ANFTIVDAPGHRD  123 (483)
T ss_dssp             CEEEEECCCCCGG
T ss_pred             ceEEEEECCCcHH
Confidence            6899999999843

>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*

Probab=98.15  E-value=4.1e-06  Score=81.95  Aligned_cols=88  Identities=11%  Similarity=0.017  Sum_probs=55.8

Q ss_pred             hHHHHHHHHhhccCEEEEEEcCCCCCCC-------cCHHHHHHHh--CCCCEEEEEEcccCCCcc--chH----HHHHHH
Q psy15351          3 RGLKDIEKHLKNVDIVIEVHDSRMPFTG-------RNHLLQQSVQ--NIRPMVLVLNKRDLINSK--HES----LIEEKV   67 (352)
Q Consensus         3 ~~~~~~~~~i~~aD~vl~VvDar~p~~~-------~~~~l~~~l~--~~k~~ilVlNK~Dl~~~~--~~~----~~~~~~   67 (352)
                      +..+.+...+..+|++|+|+|++.+...       ...+...++.  ..+|+++|+||+|+.+..  ..+    ++.+++
T Consensus       123 ~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~~~~~iIvviNK~Dl~~~~~~~~~~i~~~~~~~l  202 (483)
T 3p26_A          123 DFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQQRFEEIKSKLLPYL  202 (483)
T ss_dssp             GGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHTTCCCEEEEEECGGGGTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHcCCCcEEEEEECcCcccchHHHHHHHHHHHHHHH
Confidence            4567788889999999999999986322       1122222222  336799999999998732  222    223334


Q ss_pred             HhhcCC--CCcEEEeecCCCCCCCHHH
Q psy15351         68 RKEQSH--ISEVIFTNCRNPNCKGVQK   92 (352)
Q Consensus        68 ~~~~~~--~~~v~~iSa~~~~~~gi~~   92 (352)
                      .+.+..  ..+++++||+++  .|+.+
T Consensus       203 ~~~g~~~~~~~~i~iSA~~g--~gi~e  227 (483)
T 3p26_A          203 VDIGFFEDNINWVPISGFSG--EGVYK  227 (483)
T ss_dssp             HHHTCCGGGEEEEECCSSSC--TTSSS
T ss_pred             HHcCCCcccceEEEEeeecC--CCccc
Confidence            333432  125899999999  88874

>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=98.15  E-value=4.2e-06  Score=80.70  Aligned_cols=87  Identities=11%  Similarity=0.049  Sum_probs=58.1

Q ss_pred             HHHHHHHHhhccCEEEEEEcCCCCCCCcCHHHHHHHh-CC-CCEEEEEEcccCCCcc--c----hHHHHHHHHhhc--CC
Q psy15351          4 GLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQ-NI-RPMVLVLNKRDLINSK--H----ESLIEEKVRKEQ--SH   73 (352)
Q Consensus         4 ~~~~~~~~i~~aD~vl~VvDar~p~~~~~~~l~~~l~-~~-k~~ilVlNK~Dl~~~~--~----~~~~~~~~~~~~--~~   73 (352)
                      ..+.+...+..+|++|+|+|++++......+...++. .+ +|+++|+||+|+.+.+  .    ..++.+++++.+  ..
T Consensus       117 f~~~~~~~~~~aD~~ilVvDa~~g~~~qt~~~l~~~~~~~~~~iIvviNK~Dl~~~~~~~~~~i~~~~~~~~~~~g~~~~  196 (434)
T 1zun_B          117 YTRNMATGASTCDLAIILVDARYGVQTQTRRHSYIASLLGIKHIVVAINKMDLNGFDERVFESIKADYLKFAEGIAFKPT  196 (434)
T ss_dssp             GHHHHHHHHTTCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEEECTTTTTSCHHHHHHHHHHHHHHHHTTTCCCS
T ss_pred             HHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEEcCcCCcccHHHHHHHHHHHHHHHHHhCCCcc
Confidence            3456667889999999999999876443333323333 34 4689999999998732  1    233344444445  22


Q ss_pred             CCcEEEeecCCCCCCCHHH
Q psy15351         74 ISEVIFTNCRNPNCKGVQK   92 (352)
Q Consensus        74 ~~~v~~iSa~~~~~~gi~~   92 (352)
                      ..+++.+||+++  .|+.+
T Consensus       197 ~~~~i~vSA~~g--~gi~~  213 (434)
T 1zun_B          197 TMAFVPMSALKG--DNVVN  213 (434)
T ss_dssp             EEEEEECCTTTC--TTTSS
T ss_pred             CceEEEEeccCC--CCccc
Confidence            125899999999  99886

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=98.15  E-value=2.8e-06  Score=71.45  Aligned_cols=61  Identities=16%  Similarity=0.270  Sum_probs=36.7

Q ss_pred             CcceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecC-CCcEEEEeCCCCC
Q psy15351        166 VYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISE-KPLIYILDTPGIS  232 (352)
Q Consensus       166 ~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~-~~~~~l~DtPGi~  232 (352)
                      ...++|+++|.+|||||||+|+|.+...    .....+..+.+..  ..+.... .-.+.++||||..
T Consensus         5 ~~~~ki~v~G~~~vGKSsli~~l~~~~~----~~~~~~t~~~~~~--~~~~~~~~~~~~~i~Dt~G~~   66 (184)
T 1m7b_A            5 NVKCKIVVVGDSQCGKTALLHVFAKDCF----PENYVPTVFENYT--ASFEIDTQRIELSLWDTSGSP   66 (184)
T ss_dssp             -CEEEEEEEESTTSSHHHHHHHHHHSCC----CSSCCCCSEEEEE--EEEECSSCEEEEEEEEECCSG
T ss_pred             ceEEEEEEECCCCCCHHHHHHHHhcCCC----CCCCCCccceeEE--EEEEECCEEEEEEEEECCCCh
Confidence            3568999999999999999999986321    1111222222211  1122221 1257899999964

>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*

Probab=98.15  E-value=7.4e-07  Score=85.85  Aligned_cols=68  Identities=16%  Similarity=0.119  Sum_probs=41.2

Q ss_pred             cceEEEEeCCCCCChHHHHHHHhCCC-------CCC---CCceecCCCCCceeEeeeeEEecC-----------CCcEEE
Q psy15351        167 YNTTVMVVGVPNVGKSSIINALRSSH-------MKK---GKAVPVGPKAGVTRSVMSQVKISE-----------KPLIYI  225 (352)
Q Consensus       167 ~~~~v~i~G~pnvGKStliN~l~~~~-------~~~---~~~~~~~~~pg~T~~~~~~~~~~~-----------~~~~~l  225 (352)
                      +-..|+|+|.+|+|||||+|.|.+..       +..   .+....+..| +|+....+++...           +..+.|
T Consensus        66 ~v~vVsV~G~~~~GKStLLN~llg~~~~~~~~~wl~~~~~~~~~f~~~~-t~~~~T~GIw~~~~p~~~~~~~~~~~~vvl  144 (447)
T 3q5d_A           66 EVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRG-GSERETTGIQIWSEIFLINKPDGKKVAVLL  144 (447)
T ss_dssp             BEEEEEEEESTTSSHHHHHHHHHHHHHCCSTTTSSCCTTSBCCSSCSCC-SSCCCCCEEEEESSCEEEECSSSCEEEEEE
T ss_pred             ceEEEEEECCCCCcHHHHHHHHhhhcccccccccccccccccceecCCC-CCCCceeEEEEecCccccccCCCCcceEEE
Confidence            34679999999999999999998620       000   0111222222 3333333444332           125899


Q ss_pred             EeCCCCCCCC
Q psy15351        226 LDTPGISLPR  235 (352)
Q Consensus       226 ~DtPGi~~~~  235 (352)
                      +||||+..+.
T Consensus       145 lDTeG~~~~~  154 (447)
T 3q5d_A          145 MDTQGTFDSQ  154 (447)
T ss_dssp             EEEECCCSSH
T ss_pred             EcCCcccccc
Confidence            9999998764

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=98.15  E-value=1.1e-06  Score=73.33  Aligned_cols=61  Identities=18%  Similarity=0.140  Sum_probs=32.2

Q ss_pred             CcceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeee-eEEecC-CCcEEEEeCCCCCC
Q psy15351        166 VYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMS-QVKISE-KPLIYILDTPGISL  233 (352)
Q Consensus       166 ~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~-~~~~~~-~~~~~l~DtPGi~~  233 (352)
                      ...++|+++|.+|||||||+|++.+...       ....++|+..... .+...+ .-.+.++||||...
T Consensus         6 ~~~~ki~v~G~~~~GKssl~~~~~~~~~-------~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~   68 (182)
T 3bwd_D            6 SRFIKCVTVGDGAVGKTCLLISYTSNTF-------PTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQED   68 (182)
T ss_dssp             -CCCEEEEECSTTSSHHHHHHHHHHSCC-------C----------CBCCCC-------CEEECCCC-CT
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCCC-------CCCCCCeeeeeEEEEEEECCEEEEEEEEECCCChh
Confidence            3568999999999999999999986321       1222333322211 111111 12466999999754

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=98.14  E-value=2.8e-06  Score=72.40  Aligned_cols=62  Identities=19%  Similarity=0.128  Sum_probs=36.9

Q ss_pred             CcceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEe--cCCCcEEEEeCCCCCC
Q psy15351        166 VYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKI--SEKPLIYILDTPGISL  233 (352)
Q Consensus       166 ~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~--~~~~~~~l~DtPGi~~  233 (352)
                      .+.++|+++|.+|||||||+|.+.+..    ....+.....+++..  ...+  ...-.+.++||||...
T Consensus        18 ~~~~ki~~vG~~~vGKTsLi~~l~~~~----~~~~~~~~~~~~~~~--~~~~~~~~~~~l~i~Dt~G~~~   81 (196)
T 3llu_A           18 GSKPRILLMGLRRSGKSSIQKVVFHKM----SPNETLFLESTNKIY--KDDISNSSFVNFQIWDFPGQMD   81 (196)
T ss_dssp             --CCEEEEEESTTSSHHHHHHHHHSCC----CGGGGGGCCCCCSCE--EEEECCTTSCCEEEEECCSSCC
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHhcC----CCcceeeecccccee--eeeccCCCeeEEEEEECCCCHH
Confidence            467999999999999999999998631    111111111112111  1112  2234689999999754

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=98.14  E-value=1.9e-06  Score=74.11  Aligned_cols=61  Identities=16%  Similarity=0.205  Sum_probs=36.2

Q ss_pred             cceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCC-CcEEEEeCCCCCC
Q psy15351        167 YNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEK-PLIYILDTPGISL  233 (352)
Q Consensus       167 ~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~-~~~~l~DtPGi~~  233 (352)
                      ..++|+++|.+|||||||+|+|.+..     ... ...|.++......+...+. -.+.++||||...
T Consensus        24 ~~~ki~vvG~~~~GKSsli~~l~~~~-----~~~-~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~   85 (207)
T 2fv8_A           24 IRKKLVVVGDGACGKTCLLIVFSKDE-----FPE-VYVPTVFENYVADIEVDGKQVELALWDTAGQED   85 (207)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHHSS-----CC--------CCEEEEEEEETTEEEEEEEEECTTCTT
T ss_pred             cCcEEEEECcCCCCHHHHHHHHhcCC-----CCC-cCCCcccceEEEEEEECCEEEEEEEEECCCcHH
Confidence            45899999999999999999999632     111 1112222222122222221 2578999999754

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=98.14  E-value=2e-06  Score=74.87  Aligned_cols=63  Identities=21%  Similarity=0.292  Sum_probs=37.3

Q ss_pred             CcceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCC-CcEEEEeCCCCCC
Q psy15351        166 VYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEK-PLIYILDTPGISL  233 (352)
Q Consensus       166 ~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~-~~~~l~DtPGi~~  233 (352)
                      ...++|+++|.+|||||||+|+|.+...    .....+..|.+... ..+...+. -.+.++||||...
T Consensus        11 ~~~~ki~v~G~~~vGKSsli~~l~~~~~----~~~~~~t~~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~   74 (223)
T 3cpj_B           11 DLLFKIVLIGDSGVGKSNLLSRFTKNEF----NMDSKSTIGVEFAT-RTLEIEGKRIKAQIWDTAGQER   74 (223)
T ss_dssp             CEEEEEEEESCTTSSHHHHHHHHHHCCC----CC------CCSEEE-EEEEETTEEEEEEEECCTTTTT
T ss_pred             CeeeEEEEECcCCCCHHHHHHHHhcCCC----CCCCCCcccceeEE-EEEEECCEEEEEEEEECCCccc
Confidence            3468999999999999999999996321    11122222322221 12222211 2589999999654

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=98.13  E-value=2.7e-06  Score=73.88  Aligned_cols=60  Identities=17%  Similarity=0.170  Sum_probs=35.7

Q ss_pred             cceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeee-eEEecCCC--cEEEEeCCCCC
Q psy15351        167 YNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMS-QVKISEKP--LIYILDTPGIS  232 (352)
Q Consensus       167 ~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~-~~~~~~~~--~~~l~DtPGi~  232 (352)
                      ..++|+++|.||||||||+|++.+.     ....+...+.++.+... .+.+ ++.  .+.++||+|..
T Consensus        36 ~~~kVvlvG~~~vGKSSLl~r~~~~-----~~~~~~~~~~~g~d~~~~~i~~-~~~~~~l~~~Dt~g~~   98 (211)
T 2g3y_A           36 TYYRVVLIGEQGVGKSTLANIFAGV-----HDSMDSDCEVLGEDTYERTLMV-DGESATIILLDMWENK   98 (211)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHCC-----CCTTCCC---CCTTEEEEEEEE-TTEEEEEEEECCTTTT
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhC-----CCCCCCcCCccceeeEEEEEEE-CCeeeEEEEeecCCCc
Confidence            4589999999999999999999862     11112222222222111 2222 232  45789999853

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}

Probab=98.13  E-value=3e-07  Score=78.67  Aligned_cols=62  Identities=18%  Similarity=0.233  Sum_probs=38.9

Q ss_pred             CcceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeee-eEEecCC-CcEEEEeCCCCCC
Q psy15351        166 VYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMS-QVKISEK-PLIYILDTPGISL  233 (352)
Q Consensus       166 ~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~-~~~~~~~-~~~~l~DtPGi~~  233 (352)
                      ...++|+++|.+|||||||+|+|.+..      ......|++|.+... .+...+. ..+.++||||...
T Consensus        31 ~~~~ki~vvG~~~~GKSsli~~l~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~   94 (199)
T 3l0i_B           31 DYLFKLLLIGDSGVGKSCLLLRFADDT------YTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER   94 (199)
T ss_dssp             SEEEEEEEECCTTSCCTTTTTSSBCCC------CCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTT
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhcCC------CCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHh
Confidence            456899999999999999999998631      111222333333222 2222221 2588999999654

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=98.13  E-value=6.9e-06  Score=77.33  Aligned_cols=98  Identities=17%  Similarity=0.118  Sum_probs=64.9

Q ss_pred             HHHHHHHHhhccCEEEEEEcCCCCCCCcCHH---HHHHHh----CCCCEEEEEEcccCCCccchHHHHH----HHHhhcC
Q psy15351          4 GLKDIEKHLKNVDIVIEVHDSRMPFTGRNHL---LQQSVQ----NIRPMVLVLNKRDLINSKHESLIEE----KVRKEQS   72 (352)
Q Consensus         4 ~~~~~~~~i~~aD~vl~VvDar~p~~~~~~~---l~~~l~----~~k~~ilVlNK~Dl~~~~~~~~~~~----~~~~~~~   72 (352)
                      +++.++..+..+|++++|+|+.++.......   +.+.+.    .++|+++|+||+|+.+... ....+    ..+....
T Consensus       247 ~f~~tl~~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~-~~~~~~~~~l~~~l~~  325 (364)
T 2qtf_A          247 AFFVTLSEAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGDL-YKKLDLVEKLSKELYS  325 (364)
T ss_dssp             HHHHHHHGGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSCH-HHHHHHHHHHHHHHCS
T ss_pred             HHHHHHHHHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCchH-HHHHHHHHHHHHHhcC
Confidence            4566778899999999999998764111111   122232    4689999999999987542 22111    1122211


Q ss_pred             CCCcEEEeecCCCCCCCHHHHHHHHHHHhhhc
Q psy15351         73 HISEVIFTNCRNPNCKGVQKILPTLQHISDNM  104 (352)
Q Consensus        73 ~~~~v~~iSa~~~~~~gi~~L~~~i~~~~~~~  104 (352)
                      ...+++++||+++  .|+++|+++|.+.+...
T Consensus       326 ~~~~~~~~SA~~g--~gi~~L~~~I~~~l~~~  355 (364)
T 2qtf_A          326 PIFDVIPISALKR--TNLELLRDKIYQLATQL  355 (364)
T ss_dssp             CEEEEEECBTTTT--BSHHHHHHHHHHHHHHH
T ss_pred             CCCcEEEEECCCC--cCHHHHHHHHHHHhccc
Confidence            1114789999999  99999999998877653

>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}

Probab=98.13  E-value=5.2e-07  Score=90.40  Aligned_cols=69  Identities=23%  Similarity=0.226  Sum_probs=30.9

Q ss_pred             cCcceEEEEeCCCCCChHHHHHHHhCCC--CCCC-----------------------CceecCCCCCceeEeeeeEEecC
Q psy15351        165 EVYNTTVMVVGVPNVGKSSIINALRSSH--MKKG-----------------------KAVPVGPKAGVTRSVMSQVKISE  219 (352)
Q Consensus       165 ~~~~~~v~i~G~pnvGKStliN~l~~~~--~~~~-----------------------~~~~~~~~pg~T~~~~~~~~~~~  219 (352)
                      ....++|+++|.+|+|||||+|+|+...  +...                       ........+|+|++.........
T Consensus       174 ~k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~  253 (592)
T 3mca_A          174 PKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESD  253 (592)
T ss_dssp             CCCEEEEEEECCSSSTHHHHHHHHHHHHHCC-------------------------------------------------
T ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeC
Confidence            3466899999999999999999996310  0000                       00011126788988764433334


Q ss_pred             CCcEEEEeCCCCCC
Q psy15351        220 KPLIYILDTPGISL  233 (352)
Q Consensus       220 ~~~~~l~DtPGi~~  233 (352)
                      +..+.|+||||...
T Consensus       254 ~~~i~iiDTPGh~~  267 (592)
T 3mca_A          254 KKIYEIGDAPGHRD  267 (592)
T ss_dssp             -----CCEEESSSE
T ss_pred             CeEEEEEECCChHH
Confidence            56799999999764

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=98.12  E-value=2.2e-06  Score=73.46  Aligned_cols=61  Identities=18%  Similarity=0.307  Sum_probs=35.3

Q ss_pred             CcceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeee-eEEecCC-CcEEEEeCCCCC
Q psy15351        166 VYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMS-QVKISEK-PLIYILDTPGIS  232 (352)
Q Consensus       166 ~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~-~~~~~~~-~~~~l~DtPGi~  232 (352)
                      ...++|+++|.+|||||||+|+|.+...    ....  .|..+.+... .+...+. -.+.++||||..
T Consensus        27 ~~~~ki~vvG~~~vGKSsli~~l~~~~~----~~~~--~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~   89 (201)
T 2hup_A           27 DFLFKLVLVGDASVGKTCVVQRFKTGAF----SERQ--GSTIGVDFTMKTLEIQGKRVKLQIWDTAGQE   89 (201)
T ss_dssp             CEEEEEEEEECTTSSHHHHHHHHHHSCC----------------CEEEEEEEETTEEEEEEEECCTTCG
T ss_pred             ccceEEEEECcCCCCHHHHHHHHhhCCC----CCCC--CCCcceEEEEEEEEECCEEEEEEEEECCCcH
Confidence            4568999999999999999999986321    1111  1211222211 2222211 268899999964

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=98.12  E-value=1.8e-05  Score=66.30  Aligned_cols=90  Identities=16%  Similarity=0.172  Sum_probs=58.1

Q ss_pred             hhccCEEEEEEcCCCCCC-----------CcCHHHHHHHh-CCCCEEEEEEcccCCCccchHHHHHHHHhhcCCC----C
Q psy15351         12 LKNVDIVIEVHDSRMPFT-----------GRNHLLQQSVQ-NIRPMVLVLNKRDLINSKHESLIEEKVRKEQSHI----S   75 (352)
Q Consensus        12 i~~aD~vl~VvDar~p~~-----------~~~~~l~~~l~-~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~----~   75 (352)
                      +..+++++.|+|+.....           ..+..+...+. .+.|+++|+||+|+.+.. .....++.++.+..+    .
T Consensus        80 ~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~  158 (190)
T 2cxx_A           80 AKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNV-QEVINFLAEKFEVPLSEIDK  158 (190)
T ss_dssp             GGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCH-HHHHHHHHHHHTCCGGGHHH
T ss_pred             hccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcH-HHHHHHHHHHhhhhhhccCC
Confidence            666889999999753210           01111223332 579999999999998754 122222223334332    1


Q ss_pred             cEEEeecCCCCCCCHHHHHHHHHHHhhhc
Q psy15351         76 EVIFTNCRNPNCKGVQKILPTLQHISDNM  104 (352)
Q Consensus        76 ~v~~iSa~~~~~~gi~~L~~~i~~~~~~~  104 (352)
                      +++.+||+++  .|++++++++.+.+.+.
T Consensus       159 ~~~~~Sa~~~--~~v~~l~~~l~~~~~~~  185 (190)
T 2cxx_A          159 VFIPISAKFG--DNIERLKNRIFEVIRER  185 (190)
T ss_dssp             HEEECCTTTC--TTHHHHHHHHHHHHHHC
T ss_pred             cEEEEecCCC--CCHHHHHHHHHHhcchh
Confidence            3789999999  99999999998776543

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=98.12  E-value=6.4e-06  Score=68.57  Aligned_cols=88  Identities=13%  Similarity=0.009  Sum_probs=58.2

Q ss_pred             HHhhccCEEEEEEcCCCCCCCcCH-HHHHHHh-------CCCCEEEEEEcccCCCcc----chHHHHHHHHhh-cCCCCc
Q psy15351         10 KHLKNVDIVIEVHDSRMPFTGRNH-LLQQSVQ-------NIRPMVLVLNKRDLINSK----HESLIEEKVRKE-QSHISE   76 (352)
Q Consensus        10 ~~i~~aD~vl~VvDar~p~~~~~~-~l~~~l~-------~~k~~ilVlNK~Dl~~~~----~~~~~~~~~~~~-~~~~~~   76 (352)
                      ..+..+|++++|+|+.++.+..+. .+.+++.       .+.|+++|.||+|+.+..    ..++..++.++. +.   +
T Consensus        68 ~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~---~  144 (178)
T 2iwr_A           68 KFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXADMKRC---S  144 (178)
T ss_dssp             HHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHHHSSE---E
T ss_pred             HHHHhCCEEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHHhhcCC---e
Confidence            456789999999999876432221 1111221       267999999999994211    123333444333 34   4


Q ss_pred             EEEeecCCCCCCCHHHHHHHHHHHhh
Q psy15351         77 VIFTNCRNPNCKGVQKILPTLQHISD  102 (352)
Q Consensus        77 v~~iSa~~~~~~gi~~L~~~i~~~~~  102 (352)
                      ++.+||+++  .|++++++++.+.+.
T Consensus       145 ~~~~Sa~~~--~~i~~lf~~l~~~~~  168 (178)
T 2iwr_A          145 YYETXATYG--LNVDRVFQEVAQKVV  168 (178)
T ss_dssp             EEEEBTTTT--BTHHHHHHHHHHHHH
T ss_pred             EEEEecccc--CCHHHHHHHHHHHHH
Confidence            899999999  999999999876554

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=98.11  E-value=3.4e-06  Score=72.97  Aligned_cols=61  Identities=20%  Similarity=0.212  Sum_probs=32.8

Q ss_pred             CcceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeee-eEEecCC-CcEEEEeCCCCCC
Q psy15351        166 VYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMS-QVKISEK-PLIYILDTPGISL  233 (352)
Q Consensus       166 ~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~-~~~~~~~-~~~~l~DtPGi~~  233 (352)
                      .+.++|+++|.+|||||||+|+|.+.     ..  ......++..... .+...+. -.+.++||||...
T Consensus        32 ~~~~ki~vvG~~~vGKSsli~~l~~~-----~~--~~~~~~t~~~~~~~~~~~~~~~~~l~l~Dt~G~~~   94 (214)
T 2j1l_A           32 VRSVKVVLVGDGGCGKTSLLMVFADG-----AF--PESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDD   94 (214)
T ss_dssp             CCEEEEEEEECTTSSHHHHHHHHHC--------------CCCCCEEEEEEEEETTEEEEEEEEEC-----
T ss_pred             cceEEEEEECcCCCCHHHHHHHHHcC-----CC--CCCCCCccceeEEEEEEECCEEEEEEEEECCCchh
Confidence            35689999999999999999999963     11  1112222222111 2222221 1588999999653

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=98.11  E-value=3.9e-06  Score=72.20  Aligned_cols=61  Identities=16%  Similarity=0.088  Sum_probs=38.2

Q ss_pred             CcceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCC--cEEEEeCCCCCC
Q psy15351        166 VYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKP--LIYILDTPGISL  233 (352)
Q Consensus       166 ~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~--~~~l~DtPGi~~  233 (352)
                      ...++|+++|.+|||||||+|++.+...       ....+.|+.+.........+.  .+.++||||...
T Consensus         7 ~~~~ki~i~G~~~~GKTsli~~l~~~~~-------~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~   69 (212)
T 2j0v_A            7 SKFIKCVTVGDGAVGKTCMLICYTSNKF-------PTDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQED   69 (212)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHHSCC-------CSSCCCSSCCCEEEEEECSSCEEEEEEECCCCCCC
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCCC-------CccCCCccceeEEEEEEECCEEEEEEEEECCCcHH
Confidence            3568999999999999999999986321       112222222221111112222  688999999864

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=98.11  E-value=2.9e-06  Score=76.04  Aligned_cols=83  Identities=18%  Similarity=0.207  Sum_probs=57.9

Q ss_pred             hccCEEEEEEcCCCCCCCcCHHHH-HHHhCCCCEEEEEEcccCCCccchH-HHHHHHHhhcCCCCcEEEeecCCCCCCCH
Q psy15351         13 KNVDIVIEVHDSRMPFTGRNHLLQ-QSVQNIRPMVLVLNKRDLINSKHES-LIEEKVRKEQSHISEVIFTNCRNPNCKGV   90 (352)
Q Consensus        13 ~~aD~vl~VvDar~p~~~~~~~l~-~~l~~~k~~ilVlNK~Dl~~~~~~~-~~~~~~~~~~~~~~~v~~iSa~~~~~~gi   90 (352)
                      ..+|++++|+|++++.  ....+. ++...+.|+++|+||+|+....... ...+..+..+.+   ++.+||+++  .|+
T Consensus        82 ~~~d~ii~V~D~t~~~--~~~~~~~~l~~~~~pvilv~NK~Dl~~~~~i~~~~~~l~~~lg~~---vi~~SA~~g--~gi  154 (258)
T 3a1s_A           82 GDADLVILVADSVNPE--QSLYLLLEILEMEKKVILAMTAIDEAKKTGMKIDRYELQKHLGIP---VVFTSSVTG--EGL  154 (258)
T ss_dssp             SCCSEEEEEEETTSCH--HHHHHHHHHHTTTCCEEEEEECHHHHHHTTCCBCHHHHHHHHCSC---EEECCTTTC--TTH
T ss_pred             cCCCEEEEEeCCCchh--hHHHHHHHHHhcCCCEEEEEECcCCCCccchHHHHHHHHHHcCCC---EEEEEeeCC--cCH
Confidence            6899999999998642  122222 2332689999999999986533211 112222334665   999999999  999


Q ss_pred             HHHHHHHHHHhh
Q psy15351         91 QKILPTLQHISD  102 (352)
Q Consensus        91 ~~L~~~i~~~~~  102 (352)
                      +++++++.+..+
T Consensus       155 ~el~~~i~~~~~  166 (258)
T 3a1s_A          155 EELKEKIVEYAQ  166 (258)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhh
Confidence            999999987664

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=98.10  E-value=2.3e-06  Score=74.01  Aligned_cols=25  Identities=20%  Similarity=0.410  Sum_probs=23.0

Q ss_pred             CcceEEEEeCCCCCChHHHHHHHhC
Q psy15351        166 VYNTTVMVVGVPNVGKSSIINALRS  190 (352)
Q Consensus       166 ~~~~~v~i~G~pnvGKStliN~l~~  190 (352)
                      ...++|+++|.+|||||||+|+|.+
T Consensus        23 ~~~~ki~vvG~~~~GKSsLi~~l~~   47 (217)
T 2f7s_A           23 DYLIKLLALGDSGVGKTTFLYRYTD   47 (217)
T ss_dssp             SEEEEEEEESCTTSSHHHHHHHHHC
T ss_pred             ceeEEEEEECcCCCCHHHHHHHHhc
Confidence            4569999999999999999999996

>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*

Probab=98.09  E-value=7.6e-06  Score=71.27  Aligned_cols=88  Identities=15%  Similarity=0.114  Sum_probs=61.8

Q ss_pred             HHhhccCEEEEEEcCCCCCCCcC--HHHHHHHh---CCCCEEEEEEcccCCCccc--hHHHHHHHHhhcCCCCcEEEeec
Q psy15351         10 KHLKNVDIVIEVHDSRMPFTGRN--HLLQQSVQ---NIRPMVLVLNKRDLINSKH--ESLIEEKVRKEQSHISEVIFTNC   82 (352)
Q Consensus        10 ~~i~~aD~vl~VvDar~p~~~~~--~~l~~~l~---~~k~~ilVlNK~Dl~~~~~--~~~~~~~~~~~~~~~~~v~~iSa   82 (352)
                      .....+|++++|.|..++.+..+  ..+..+..   .+.|++||.||+||.....  .++..++.++.+..   ++.+||
T Consensus        81 ~~~~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl~~~r~V~~~e~~~~a~~~~~~---~~e~SA  157 (216)
T 4dkx_A           81 SYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVM---FIETSA  157 (216)
T ss_dssp             HHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCE---EEEEBT
T ss_pred             HHhccccEEEEEeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeeccchHhcCcccHHHHhhHHHHhCCe---eEEEeC
Confidence            46789999999999987643322  11222221   4678999999999976432  34444555555665   889999


Q ss_pred             CCCCCCCHHHHHHHHHHHhh
Q psy15351         83 RNPNCKGVQKILPTLQHISD  102 (352)
Q Consensus        83 ~~~~~~gi~~L~~~i~~~~~  102 (352)
                      +++  .|++++++.|.+.+.
T Consensus       158 ktg--~nV~e~F~~i~~~i~  175 (216)
T 4dkx_A          158 KAG--YNVKQLFRRVAAALP  175 (216)
T ss_dssp             TTT--BSHHHHHHHHHHHC-
T ss_pred             CCC--cCHHHHHHHHHHHHH
Confidence            999  999999998876654

>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*

Probab=98.09  E-value=5.5e-06  Score=78.97  Aligned_cols=98  Identities=15%  Similarity=0.025  Sum_probs=66.6

Q ss_pred             HHHHHHHHhhccCEEEEEEcCCCCCCCcCHHHHHHHh-CCCC-EEEEEEcccCCCcc-ch----HHHHHHHHhhcCC--C
Q psy15351          4 GLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQ-NIRP-MVLVLNKRDLINSK-HE----SLIEEKVRKEQSH--I   74 (352)
Q Consensus         4 ~~~~~~~~i~~aD~vl~VvDar~p~~~~~~~l~~~l~-~~k~-~ilVlNK~Dl~~~~-~~----~~~~~~~~~~~~~--~   74 (352)
                      ..+.+...+..+|++|+|+|++++......+....+. .+.| +++|+||+|+.+.. ..    ++..+++++.++.  .
T Consensus        79 f~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~  158 (397)
T 1d2e_A           79 YVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQIGVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKGEE  158 (397)
T ss_dssp             HHHHHHHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCTTT
T ss_pred             HHHHHHhhHhhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCeEEEEEECcccCCCHHHHHHHHHHHHHHHHHcCCCccc
Confidence            3456777889999999999999876443333333333 5677 68999999998532 11    2334455444431  1


Q ss_pred             CcEEEeecCCCCCC---------C-HHHHHHHHHHHhhh
Q psy15351         75 SEVIFTNCRNPNCK---------G-VQKILPTLQHISDN  103 (352)
Q Consensus        75 ~~v~~iSa~~~~~~---------g-i~~L~~~i~~~~~~  103 (352)
                      .+++++||+++  .         | +.+|++.|.+.++.
T Consensus       159 ~~~i~~SA~~g--~n~~~~~~~~g~i~~Ll~~l~~~~p~  195 (397)
T 1d2e_A          159 TPIIVGSALCA--LEQRDPELGLKSVQKLLDAVDTYIPV  195 (397)
T ss_dssp             SCEEECCHHHH--HTTCCTTTTHHHHHHHHHHHHHHSCC
T ss_pred             CcEEEeehhhc--ccccCCCccCCcHHHHHHHHHHhCCC
Confidence            25999999986  5         3 88999999887764

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=98.08  E-value=6.2e-06  Score=69.56  Aligned_cols=91  Identities=26%  Similarity=0.272  Sum_probs=56.7

Q ss_pred             HHHHhhccCEEEEEEcCCCCCCCcC--HHHHHHHh----CCCCEEEEEEcccCCCccc--hHHHHHHHHhhcCCCCcEEE
Q psy15351          8 IEKHLKNVDIVIEVHDSRMPFTGRN--HLLQQSVQ----NIRPMVLVLNKRDLINSKH--ESLIEEKVRKEQSHISEVIF   79 (352)
Q Consensus         8 ~~~~i~~aD~vl~VvDar~p~~~~~--~~l~~~l~----~~k~~ilVlNK~Dl~~~~~--~~~~~~~~~~~~~~~~~v~~   79 (352)
                      ....+..+|++|+|+|+.++.+...  ..+..+..    .+.|+++|+||+|+.+...  .....++....+..   ++.
T Consensus        87 ~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~---~~~  163 (189)
T 1z06_A           87 VQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMP---LFE  163 (189)
T ss_dssp             HHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCC---EEE
T ss_pred             hHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceeCHHHHHHHHHHcCCE---EEE
Confidence            3456789999999999987533222  11222221    4689999999999976432  23333333444555   899


Q ss_pred             eecCCCC-CCCHHHHHHHHHHHh
Q psy15351         80 TNCRNPN-CKGVQKILPTLQHIS  101 (352)
Q Consensus        80 iSa~~~~-~~gi~~L~~~i~~~~  101 (352)
                      +||+++. ..|+++++++|.+.+
T Consensus       164 ~Sa~~~~~~~~i~~l~~~l~~~i  186 (189)
T 1z06_A          164 TSAKNPNDNDHVEAIFMTLAHKL  186 (189)
T ss_dssp             CCSSSGGGGSCHHHHHHHHC---
T ss_pred             EeCCcCCcccCHHHHHHHHHHHH
Confidence            9999861 146777777765433

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}

Probab=97.35  E-value=4.5e-07  Score=77.75  Aligned_cols=86  Identities=14%  Similarity=0.131  Sum_probs=56.8

Q ss_pred             HHhhccCEEEEEEcCCCCCCCcCH--HHHHHHh---CCCCEEEEEEcccCCCccch--------------HHHHHHHHhh
Q psy15351         10 KHLKNVDIVIEVHDSRMPFTGRNH--LLQQSVQ---NIRPMVLVLNKRDLINSKHE--------------SLIEEKVRKE   70 (352)
Q Consensus        10 ~~i~~aD~vl~VvDar~p~~~~~~--~l~~~l~---~~k~~ilVlNK~Dl~~~~~~--------------~~~~~~~~~~   70 (352)
                      ..+..+|++++|+|+.++.+..+.  .+...+.   .+.|+++|+||+|+.+....              .+..++.+..
T Consensus        97 ~~~~~~d~iilv~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  176 (204)
T 3th5_A           97 LSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEI  176 (204)
Confidence            457889999999999876443321  2222222   27899999999999764311              1122222222


Q ss_pred             cCCCCcEEEeecCCCCCCCHHHHHHHHHH
Q psy15351         71 QSHISEVIFTNCRNPNCKGVQKILPTLQH   99 (352)
Q Consensus        71 ~~~~~~v~~iSa~~~~~~gi~~L~~~i~~   99 (352)
                      +..  +++.+||+++  .|+++++++|.+
T Consensus       177 ~~~--~~~~vSA~~g--~gi~~l~~~l~~  201 (204)
T 3th5_A          177 GAV--KYLECSALTQ--RGLKTVFDEAIR  201 (204)
Confidence            331  4788999999  999999988764

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=98.08  E-value=5e-06  Score=72.00  Aligned_cols=61  Identities=18%  Similarity=0.253  Sum_probs=36.0

Q ss_pred             CcceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCC-CcEEEEeCCCCC
Q psy15351        166 VYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEK-PLIYILDTPGIS  232 (352)
Q Consensus       166 ~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~-~~~~l~DtPGi~  232 (352)
                      ...++|+++|.+|||||||+|++.+...    .....++.+.+..  ..+..... -.+.++||||..
T Consensus        25 ~~~~ki~vvG~~~vGKSsL~~~l~~~~~----~~~~~~t~~~~~~--~~~~~~~~~~~l~i~Dt~G~~   86 (214)
T 3q3j_B           25 VARCKLVLVGDVQCGKTAMLQVLAKDCY----PETYVPTVFENYT--ACLETEEQRVELSLWDTSGSP   86 (214)
T ss_dssp             --CEEEEEECSTTSSHHHHHHHHHHSCC----CSSCCCCSEEEEE--EEEEC--CEEEEEEEEECCSG
T ss_pred             cceEEEEEECcCCCCHHHHHHHHhcCCC----CCCcCCeeeeeEE--EEEEECCEEEEEEEEECCCCH
Confidence            4579999999999999999999986311    1111222222221  11222211 257899999964

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=98.07  E-value=4.4e-06  Score=71.93  Aligned_cols=61  Identities=16%  Similarity=0.258  Sum_probs=36.6

Q ss_pred             CcceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecC-CCcEEEEeCCCCC
Q psy15351        166 VYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISE-KPLIYILDTPGIS  232 (352)
Q Consensus       166 ~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~-~~~~~l~DtPGi~  232 (352)
                      ...++|+++|.+|||||||+|+|.+...    .....++.+.+.  ...+.... .-.+.++||||..
T Consensus        26 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~----~~~~~~t~~~~~--~~~~~~~~~~~~l~i~Dt~G~~   87 (205)
T 1gwn_A           26 NVKCKIVVVGDSQCGKTALLHVFAKDCF----PENYVPTVFENY--TASFEIDTQRIELSLWDTSGSP   87 (205)
T ss_dssp             -CEEEEEEEESTTSSHHHHHHHHHHSCC----CSSCCCCSEEEE--EEEEESSSSEEEEEEEEECCSG
T ss_pred             ceeeEEEEECCCCCCHHHHHHHHhcCCC----CCCcCCccceeE--EEEEEECCEEEEEEEEeCCCcH
Confidence            4568999999999999999999996321    111112222211  11122221 1258899999964

>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*

Probab=98.07  E-value=1.1e-05  Score=80.76  Aligned_cols=91  Identities=18%  Similarity=0.180  Sum_probs=62.7

Q ss_pred             HhhccCEEEEEEcCCCCCCCcCHHHHHHHh-CCCCEEEEEEcccCCCccc-------------------------hHHHH
Q psy15351         11 HLKNVDIVIEVHDSRMPFTGRNHLLQQSVQ-NIRPMVLVLNKRDLINSKH-------------------------ESLIE   64 (352)
Q Consensus        11 ~i~~aD~vl~VvDar~p~~~~~~~l~~~l~-~~k~~ilVlNK~Dl~~~~~-------------------------~~~~~   64 (352)
                      .+..+|++|+|+|+.++..........+++ .+.|+++|+||+|+.+...                         ..++.
T Consensus        90 ~~~~aD~aILVvDa~~Gv~~qT~e~l~~l~~~~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~~~~v~~~~~e~i~ei~  169 (594)
T 1g7s_A           90 GGALADLAILIVDINEGFKPQTQEALNILRMYRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQVQQKLDTKVYELV  169 (594)
T ss_dssp             SSBSCSEEEEEEETTTCCCHHHHHHHHHHHHTTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHHHHHHHHHHHHHHH
T ss_pred             HHhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCeEEEEecccccccccccccCCchHHHHHHhHHHHHHHHHHHHHHHH
Confidence            356799999999999876544434434444 6889999999999975210                         01222


Q ss_pred             HHHHhhcCC------------CCcEEEeecCCCCCCCHHHHHHHHHHHhhh
Q psy15351         65 EKVRKEQSH------------ISEVIFTNCRNPNCKGVQKILPTLQHISDN  103 (352)
Q Consensus        65 ~~~~~~~~~------------~~~v~~iSa~~~~~~gi~~L~~~i~~~~~~  103 (352)
                      +.+.+.++.            ..+++++||+++  .|+++|+++|...++.
T Consensus       170 ~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG--~GI~eLl~~I~~~~~~  218 (594)
T 1g7s_A          170 GKLHEEGFESERFDRVTDFASQVSIIPISAITG--EGIPELLTMLMGLAQQ  218 (594)
T ss_dssp             HHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTC--TTHHHHHHHHHHHHHH
T ss_pred             HHHHHcCcchHHHHHHHhccCcceEEEEeccCC--CCchhHHHHHHhhccc
Confidence            333333321            125899999999  9999999999877653

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=98.07  E-value=3.6e-06  Score=71.26  Aligned_cols=61  Identities=16%  Similarity=0.114  Sum_probs=38.3

Q ss_pred             CcceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCC--CcEEEEeCCCCCC
Q psy15351        166 VYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEK--PLIYILDTPGISL  233 (352)
Q Consensus       166 ~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~--~~~~l~DtPGi~~  233 (352)
                      ...++|+++|.+|||||||+|++.+...       ....+.|+...........+  -.+.++||||...
T Consensus        16 ~~~~ki~v~G~~~~GKssli~~l~~~~~-------~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~G~~~   78 (194)
T 2atx_A           16 ALMLKCVVVGDGAVGKTCLLMSYANDAF-------PEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQED   78 (194)
T ss_dssp             EEEEEEEEEECTTSSHHHHHHHHHHSSC-------CCSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSS
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCCC-------CCCCCCcccceeEEEEEECCEEEEEEEEECCCCcc
Confidence            3568999999999999999999996321       12223333222111111222  2578999999764

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=98.06  E-value=3.6e-06  Score=72.79  Aligned_cols=58  Identities=19%  Similarity=0.381  Sum_probs=38.6

Q ss_pred             CcceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCCcEEEEeCCCCCC
Q psy15351        166 VYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISL  233 (352)
Q Consensus       166 ~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~~  233 (352)
                      ...++|+++|.+|||||||+|+|.+...   .....+..|.++...       ....+.++||||...
T Consensus        10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~~---~~~~~~~~~~~~~~~-------~~~~~~l~Dt~G~~~   67 (218)
T 1nrj_B           10 SYQPSIIIAGPQNSGKTSLLTLLTTDSV---RPTVVSQEPLSAADY-------DGSGVTLVDFPGHVK   67 (218)
T ss_dssp             CCCCEEEEECSTTSSHHHHHHHHHHSSC---CCBCCCSSCEEETTG-------GGSSCEEEECCCCGG
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCCC---CCeeeecCceEEEEe-------eCceEEEEECCCcHH
Confidence            4568999999999999999999997321   011112233333221       234689999999854

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=98.06  E-value=3.8e-06  Score=77.10  Aligned_cols=97  Identities=14%  Similarity=0.121  Sum_probs=64.7

Q ss_pred             HHHHHHHhhccCEEEEEEcC-CCCCCCcCH-HHHHHHh-CCCCEEEEEEcccCCCccchHHHHHHHHhh--c--CCCCcE
Q psy15351          5 LKDIEKHLKNVDIVIEVHDS-RMPFTGRNH-LLQQSVQ-NIRPMVLVLNKRDLINSKHESLIEEKVRKE--Q--SHISEV   77 (352)
Q Consensus         5 ~~~~~~~i~~aD~vl~VvDa-r~p~~~~~~-~l~~~l~-~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~--~--~~~~~v   77 (352)
                      ...+...+..+|++++|+|+ ..++...+. .+.+.+. .++|+++|+||+|+.+...  .+.+.++..  .  ..+.++
T Consensus       158 ~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~~~~~~~~i~v~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~v  235 (315)
T 1jwy_B          158 RRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVDPEGKRTIGVITKLDLMDKGT--DAMEVLTGRVIPLTLGFIGV  235 (315)
T ss_dssp             HHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHCSSCSSEEEEEECTTSSCSSC--CCHHHHTTSSSCCTTCEEEC
T ss_pred             HHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHhCCCCCcEEEEEcCcccCCcch--HHHHHHhCCCccCCCCeEEE
Confidence            34567788999999999996 555544443 5556665 5789999999999987653  122333221  1  221234


Q ss_pred             EEeecCC---CCCCCHHHHHHHHHHHhhhcc
Q psy15351         78 IFTNCRN---PNCKGVQKILPTLQHISDNMT  105 (352)
Q Consensus        78 ~~iSa~~---~~~~gi~~L~~~i~~~~~~~~  105 (352)
                      ..+|+.+   +  .|+.++++.+.+.++..+
T Consensus       236 ~~~sa~~~~~~--~gv~~l~~~~~~~~~~~~  264 (315)
T 1jwy_B          236 INRSQEDIIAK--KSIRESLKSEILYFKNHP  264 (315)
T ss_dssp             CCCCHHHHSSS--CCHHHHHHHHHHHHHTCT
T ss_pred             ecCChhhhccC--CCHHHHHHHHHHHHhCCC
Confidence            4455555   6  899999999998887654

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=98.06  E-value=5.4e-06  Score=70.04  Aligned_cols=88  Identities=13%  Similarity=0.028  Sum_probs=60.5

Q ss_pred             HHHhhccCEEEEEEcCCCCCCCcC--HHHHHHHh------CCCCEEEEEEcccCCCccc--hHHHHHHHHhhcCCCCcEE
Q psy15351          9 EKHLKNVDIVIEVHDSRMPFTGRN--HLLQQSVQ------NIRPMVLVLNKRDLINSKH--ESLIEEKVRKEQSHISEVI   78 (352)
Q Consensus         9 ~~~i~~aD~vl~VvDar~p~~~~~--~~l~~~l~------~~k~~ilVlNK~Dl~~~~~--~~~~~~~~~~~~~~~~~v~   78 (352)
                      ...+..+|++++|+|+.++.+...  ..+..+..      .+.|+++|+||+|+.....  .++..++.++.+..   ++
T Consensus        86 ~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~---~~  162 (187)
T 3c5c_A           86 ERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAGRFGCL---FF  162 (187)
T ss_dssp             HHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCE---EE
T ss_pred             HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHHHHcCCc---EE
Confidence            346788999999999986532211  11111111      3789999999999965432  23444455555664   89


Q ss_pred             Eeec-CCCCCCCHHHHHHHHHHHh
Q psy15351         79 FTNC-RNPNCKGVQKILPTLQHIS  101 (352)
Q Consensus        79 ~iSa-~~~~~~gi~~L~~~i~~~~  101 (352)
                      .+|| +++  .|++++++.+.+.+
T Consensus       163 e~Sa~~~g--~gv~~lf~~l~~~i  184 (187)
T 3c5c_A          163 EVSACLDF--EHVQHVFHEAVREA  184 (187)
T ss_dssp             ECCSSSCS--HHHHHHHHHHHHHH
T ss_pred             EEeecCcc--ccHHHHHHHHHHHH
Confidence            9999 899  99999999887654

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}

Probab=98.06  E-value=5e-07  Score=77.23  Aligned_cols=85  Identities=19%  Similarity=0.086  Sum_probs=51.3

Q ss_pred             HhhccCEEEEEEcCCCCCCCcCHHHHHH---Hh----CCCCEEEEEEcccCCCccch--HHHHHHHHhhcCCCCcEEEee
Q psy15351         11 HLKNVDIVIEVHDSRMPFTGRNHLLQQS---VQ----NIRPMVLVLNKRDLINSKHE--SLIEEKVRKEQSHISEVIFTN   81 (352)
Q Consensus        11 ~i~~aD~vl~VvDar~p~~~~~~~l~~~---l~----~~k~~ilVlNK~Dl~~~~~~--~~~~~~~~~~~~~~~~v~~iS   81 (352)
                      .+..+|++++|+|+.++.+.  ..+..+   +.    .+.|+++|+||+|+.+....  ....++....+.+   ++.+|
T Consensus       102 ~~~~~d~~i~v~d~~~~~s~--~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~---~~~vS  176 (199)
T 3l0i_B          102 YYRGAHGIIVVYDVTDQESF--NNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIP---FLETS  176 (199)
T ss_dssp             --CCCSEEEECC-CCCSHHH--HHHHHHHHHHHSCC-CCSEEEEC-CCSSCC--CCCCSCC-CHHHHTTTCC---BCCCC
T ss_pred             HhhcCCEEEEEEECCCHHHH--HHHHHHHHHHHHhccCCCCEEEEEECccCCccccCCHHHHHHHHHHcCCe---EEEEE
Confidence            56789999999999875322  122222   22    26899999999999765321  1222333344555   88999


Q ss_pred             cCCCCCCCHHHHHHHHHHHhh
Q psy15351         82 CRNPNCKGVQKILPTLQHISD  102 (352)
Q Consensus        82 a~~~~~~gi~~L~~~i~~~~~  102 (352)
                      |+++  .|+++++++|.+.+.
T Consensus       177 A~~g--~gv~~l~~~l~~~l~  195 (199)
T 3l0i_B          177 AKNA--TNVEQSFMTMAAEIK  195 (199)
T ss_dssp             C-----HHHHHHHHHHTTTTT
T ss_pred             CCCC--CCHHHHHHHHHHHHH
Confidence            9999  999999999876554

>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}

Probab=98.06  E-value=6.5e-07  Score=88.29  Aligned_cols=61  Identities=25%  Similarity=0.417  Sum_probs=45.5

Q ss_pred             cceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEE-ecCCCcEEEEeCCCCCC
Q psy15351        167 YNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVK-ISEKPLIYILDTPGISL  233 (352)
Q Consensus       167 ~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~-~~~~~~~~l~DtPGi~~  233 (352)
                      ++++|+++|.+|+|||||+|+|++      ........||+|.+...... ...+..+.|+||||...
T Consensus         3 r~pkV~IvG~~~vGKTSLl~~L~~------~~~~~~~~~giT~~i~~~~v~~~~g~~i~~iDTPGhe~   64 (537)
T 3izy_P            3 RSPVVTIMGHVDHGKTTLLDKLRK------TQVAAMEAGGITQHIGAFLVSLPSGEKITFLDTPGHAA   64 (537)
T ss_dssp             CCCBCEEEESTTTTHHHHHHHHHH------HHHHHSSSCCBCCCTTSCCBCSSCSSCCBCEECSSSCC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhC------CCcccccCCceeEEEeEEEEEeCCCCEEEEEECCChHH
Confidence            467899999999999999999985      23344567888888653222 22455799999999653

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=98.06  E-value=7.5e-06  Score=78.32  Aligned_cols=92  Identities=16%  Similarity=0.257  Sum_probs=65.1

Q ss_pred             HHHHhhccCEEEEEEcCC-CCCCCcCH---HHHHHHh--CCCCEEEEEEcccCCCccchHHHHHHHHhhcCCCCcEEEee
Q psy15351          8 IEKHLKNVDIVIEVHDSR-MPFTGRNH---LLQQSVQ--NIRPMVLVLNKRDLINSKHESLIEEKVRKEQSHISEVIFTN   81 (352)
Q Consensus         8 ~~~~i~~aD~vl~VvDar-~p~~~~~~---~l~~~l~--~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~v~~iS   81 (352)
                      ..+.++++|.+++|+|+. .++.....   ++..+..  ..+|.++|+||+|+........+.+.+++.+..   ++.+|
T Consensus       229 fl~~~era~~lL~vvDls~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~~~~~~l~~~l~~~g~~---vi~iS  305 (416)
T 1udx_A          229 FLRHIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEEEAVKALADALAREGLA---VLPVS  305 (416)
T ss_dssp             HHHHHTSSSEEEEEEETTSCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCHHHHHHHHHHHHTTTSC---EEECC
T ss_pred             HHHHHHHHHhhhEEeCCccCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhHHHHHHHHHHHHhcCCe---EEEEE
Confidence            456678999999999995 33221111   1111111  368999999999998764345555556555555   99999


Q ss_pred             cCCCCCCCHHHHHHHHHHHhhhc
Q psy15351         82 CRNPNCKGVQKILPTLQHISDNM  104 (352)
Q Consensus        82 a~~~~~~gi~~L~~~i~~~~~~~  104 (352)
                      |+++  +|+++|+++|.+.+...
T Consensus       306 A~~g--~gi~eL~~~i~~~l~~~  326 (416)
T 1udx_A          306 ALTG--AGLPALKEALHALVRST  326 (416)
T ss_dssp             TTTC--TTHHHHHHHHHHHHHTS
T ss_pred             CCCc--cCHHHHHHHHHHHHHhc
Confidence            9999  99999999999887654

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=98.05  E-value=4.5e-06  Score=70.29  Aligned_cols=23  Identities=26%  Similarity=0.546  Sum_probs=20.9

Q ss_pred             ceEEEEeCCCCCChHHHHHHHhC
Q psy15351        168 NTTVMVVGVPNVGKSSIINALRS  190 (352)
Q Consensus       168 ~~~v~i~G~pnvGKStliN~l~~  190 (352)
                      .++|+++|.+|||||||+|++.+
T Consensus         2 ~~kv~ivG~~gvGKStLl~~l~~   24 (184)
T 2zej_A            2 RMKLMIVGNTGSGKTTLLQQLMK   24 (184)
T ss_dssp             -CEEEEESCTTSSHHHHHHHHTC
T ss_pred             ceEEEEECCCCCCHHHHHHHHhc
Confidence            36899999999999999999986

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=98.04  E-value=1.5e-06  Score=73.53  Aligned_cols=25  Identities=20%  Similarity=0.188  Sum_probs=22.7

Q ss_pred             CcceEEEEeCCCCCChHHHHHHHhC
Q psy15351        166 VYNTTVMVVGVPNVGKSSIINALRS  190 (352)
Q Consensus       166 ~~~~~v~i~G~pnvGKStliN~l~~  190 (352)
                      ...++|+++|.+|||||||+|.+.+
T Consensus        12 ~~~~ki~vvG~~~~GKssL~~~l~~   36 (198)
T 3t1o_A           12 EINFKIVYYGPGLSGKTTNLKWIYS   36 (198)
T ss_dssp             EEEEEEEEECSTTSSHHHHHHHHHH
T ss_pred             ccccEEEEECCCCCCHHHHHHHHHh
Confidence            3568999999999999999999986

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=98.04  E-value=8.3e-07  Score=82.78  Aligned_cols=25  Identities=48%  Similarity=0.599  Sum_probs=22.5

Q ss_pred             CcceEEEEeCCCCCChHHHHHHHhC
Q psy15351        166 VYNTTVMVVGVPNVGKSSIINALRS  190 (352)
Q Consensus       166 ~~~~~v~i~G~pnvGKStliN~l~~  190 (352)
                      ..+..++++|.||+|||||+|.|.+
T Consensus        53 ~~g~~v~i~G~~GaGKSTLl~~l~g   77 (337)
T 2qm8_A           53 GRAIRVGITGVPGVGKSTTIDALGS   77 (337)
T ss_dssp             CCSEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            4577899999999999999999973

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=98.03  E-value=4e-06  Score=78.67  Aligned_cols=89  Identities=15%  Similarity=0.108  Sum_probs=58.3

Q ss_pred             HHhhccCEEEEEEcCCCCCCCcCHHHHHHHhCCCCEEEEEEcccCCCccchHHHHHHHHhh----cC---C-CCcEEEee
Q psy15351         10 KHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHESLIEEKVRKE----QS---H-ISEVIFTN   81 (352)
Q Consensus        10 ~~i~~aD~vl~VvDar~p~~~~~~~l~~~l~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~----~~---~-~~~v~~iS   81 (352)
                      ..+..+|++++|+|+......  ..+...+ ..+|.++|+||+|+.+........+.+.+.    ..   . ..+++.+|
T Consensus       188 ~~~~~aD~vl~V~d~~~~~~~--~~l~~~~-~~~p~ivVlNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iS  264 (355)
T 3p32_A          188 AVANMVDTFVLLTLARTGDQL--QGIKKGV-LELADIVVVNKADGEHHKEARLAARELSAAIRLIYPREALWRPPVLTMS  264 (355)
T ss_dssp             HHHTTCSEEEEEEESSTTCTT--TTCCTTS-GGGCSEEEEECCCGGGHHHHHHHHHHHHHHHHHHSTTCCSCCCCEEEEB
T ss_pred             HHHHhCCEEEEEECCCCCccH--HHHHHhH-hhcCCEEEEECCCCcChhHHHHHHHHHHHHHhhccccccCCCCceEEEE
Confidence            345899999999997643211  1111111 346899999999997654333333333221    10   0 12599999


Q ss_pred             cCCCCCCCHHHHHHHHHHHhhh
Q psy15351         82 CRNPNCKGVQKILPTLQHISDN  103 (352)
Q Consensus        82 a~~~~~~gi~~L~~~i~~~~~~  103 (352)
                      |+++  +|+++|+++|.+.++.
T Consensus       265 A~~g--~Gi~~L~~~i~~~~~~  284 (355)
T 3p32_A          265 AVEG--RGLAELWDTVERHRQV  284 (355)
T ss_dssp             GGGT--BSHHHHHHHHHHHHHH
T ss_pred             cCCC--CCHHHHHHHHHHHHHH
Confidence            9999  9999999999887764

>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}

Probab=98.01  E-value=9.7e-07  Score=87.16  Aligned_cols=68  Identities=19%  Similarity=0.194  Sum_probs=41.6

Q ss_pred             cceEEEEeCCCCCChHHHHHHHhCCCCCCCC----------ceecC------CCCCceeEeeeeEEecCCCcEEEEeCCC
Q psy15351        167 YNTTVMVVGVPNVGKSSIINALRSSHMKKGK----------AVPVG------PKAGVTRSVMSQVKISEKPLIYILDTPG  230 (352)
Q Consensus       167 ~~~~v~i~G~pnvGKStliN~l~~~~~~~~~----------~~~~~------~~pg~T~~~~~~~~~~~~~~~~l~DtPG  230 (352)
                      +..+|+++|.+|+|||||+|+|+...-....          ...+.      ..+|+|...........+..+.|+||||
T Consensus        12 ~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liDTPG   91 (528)
T 3tr5_A           12 MRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLDTPG   91 (528)
T ss_dssp             TEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEECCCC
T ss_pred             cCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEEECCC
Confidence            3468999999999999999999621000000          00011      1256665544333333455799999999


Q ss_pred             CCCC
Q psy15351        231 ISLP  234 (352)
Q Consensus       231 i~~~  234 (352)
                      ....
T Consensus        92 ~~df   95 (528)
T 3tr5_A           92 HADF   95 (528)
T ss_dssp             STTC
T ss_pred             chhH
Confidence            8653

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}

Probab=98.01  E-value=3.9e-06  Score=77.94  Aligned_cols=58  Identities=17%  Similarity=0.229  Sum_probs=36.5

Q ss_pred             CcceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCCcEEEEeCCCCC
Q psy15351        166 VYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGIS  232 (352)
Q Consensus       166 ~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~  232 (352)
                      .+.++|+++|.+|||||||+|+|.+.     .....  .|  |...........+..+.++||||-.
T Consensus       163 ~~~~kI~ivG~~~vGKSsLl~~l~~~-----~~~~~--~p--T~~~~~~~~~~~~~~l~i~Dt~G~~  220 (329)
T 3o47_A          163 KKEMRILMVGLDAAGKTTILYKLKLG-----EIVTT--IP--TIGFNVETVEYKNISFTVWDVGGQD  220 (329)
T ss_dssp             CCSEEEEEEESTTSSHHHHHHHTCSS-----CCEEE--EE--ETTEEEEEEEETTEEEEEEECC---
T ss_pred             cCcceEEEECCCCccHHHHHHHHhCC-----CCCCc--cc--ccceEEEEEecCcEEEEEEECCCCH
Confidence            45689999999999999999999862     22222  22  3322222222234478999999944

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=98.00  E-value=5.2e-06  Score=69.80  Aligned_cols=88  Identities=17%  Similarity=0.087  Sum_probs=57.6

Q ss_pred             HHhhccCEEEEEEcCCCCCCCcC--HHHHHHHh---CCCCEEEEEEcccCCCcc--------------chHHHHHHHHhh
Q psy15351         10 KHLKNVDIVIEVHDSRMPFTGRN--HLLQQSVQ---NIRPMVLVLNKRDLINSK--------------HESLIEEKVRKE   70 (352)
Q Consensus        10 ~~i~~aD~vl~VvDar~p~~~~~--~~l~~~l~---~~k~~ilVlNK~Dl~~~~--------------~~~~~~~~~~~~   70 (352)
                      ..+..+|++++|+|+.++.+..+  ..+...++   .+.|+++|+||+|+.+..              ..++..++.++.
T Consensus        74 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  153 (184)
T 1m7b_A           74 LSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQI  153 (184)
T ss_dssp             GGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHH
T ss_pred             hhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHHc
Confidence            35688999999999987533221  11222222   478999999999997421              122333333344


Q ss_pred             cCCCCcEEEeecC-CCCCCCHHHHHHHHHHHh
Q psy15351         71 QSHISEVIFTNCR-NPNCKGVQKILPTLQHIS  101 (352)
Q Consensus        71 ~~~~~~v~~iSa~-~~~~~gi~~L~~~i~~~~  101 (352)
                      +..  +++.+||+ ++  .|++++++.+.+.+
T Consensus       154 ~~~--~~~e~Sa~~~~--~gi~~l~~~i~~~~  181 (184)
T 1m7b_A          154 GAA--TYIECSALQSE--NSVRDIFHVATLAC  181 (184)
T ss_dssp             TCS--EEEECBTTTBH--HHHHHHHHHHHHHH
T ss_pred             CCc--EEEEeeecCCC--cCHHHHHHHHHHHH
Confidence            422  48999998 68  89999999887643

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=97.99  E-value=7.9e-06  Score=68.91  Aligned_cols=26  Identities=23%  Similarity=0.271  Sum_probs=23.4

Q ss_pred             CcceEEEEeCCCCCChHHHHHHHhCC
Q psy15351        166 VYNTTVMVVGVPNVGKSSIINALRSS  191 (352)
Q Consensus       166 ~~~~~v~i~G~pnvGKStliN~l~~~  191 (352)
                      .+.++|+++|.+|||||||+|++.+.
T Consensus        18 ~~~~ki~ivG~~~vGKSsL~~~~~~~   43 (184)
T 3ihw_A           18 GPELKVGIVGNLSSGKSALVHRYLTG   43 (184)
T ss_dssp             CCEEEEEEECCTTSCHHHHHHHHHHS
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHhcC
Confidence            46799999999999999999999863

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=97.98  E-value=8e-06  Score=69.66  Aligned_cols=60  Identities=20%  Similarity=0.295  Sum_probs=36.2

Q ss_pred             ceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCC--cEEEEeCCCCCC
Q psy15351        168 NTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKP--LIYILDTPGISL  233 (352)
Q Consensus       168 ~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~--~~~l~DtPGi~~  233 (352)
                      .++|+++|.+|||||||+|+|.+..    ......+..|.+... ..+.+. +.  .+.++||||...
T Consensus         5 ~~kv~lvG~~g~GKSTLl~~l~~~~----~~~~~~~t~~~~~~~-~~i~~~-g~~~~~~i~Dt~g~~~   66 (199)
T 2f9l_A            5 LFKVVLIGDSGVGKSNLLSRFTRNE----FNLESKSTIGVEFAT-RSIQVD-GKTIKAQIWDTAGQER   66 (199)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHSC----CCC---CCCSCEEEE-EEEEET-TEEEEEEEEECSSGGG
T ss_pred             eEEEEEECcCCCCHHHHHHHHhcCC----CCCCCCCccceeEEE-EEEEEC-CEEEEEEEEECCCchh
Confidence            4789999999999999999999731    111222223322221 122232 32  467899999653

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*

Probab=97.98  E-value=7.5e-06  Score=75.38  Aligned_cols=88  Identities=13%  Similarity=0.102  Sum_probs=59.9

Q ss_pred             HHhhccCEEEEEEcCCCCCCCcCH--HHHHHHh---CCCCEEEEEEcccCCCccc--------------hHHHHHHHHhh
Q psy15351         10 KHLKNVDIVIEVHDSRMPFTGRNH--LLQQSVQ---NIRPMVLVLNKRDLINSKH--------------ESLIEEKVRKE   70 (352)
Q Consensus        10 ~~i~~aD~vl~VvDar~p~~~~~~--~l~~~l~---~~k~~ilVlNK~Dl~~~~~--------------~~~~~~~~~~~   70 (352)
                      ..+..+|++++|+|+.++.+..+.  .+...+.   .+.|+++|+||+|+.+...              ..+..++.+..
T Consensus       222 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  301 (332)
T 2wkq_A          222 LSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEI  301 (332)
T ss_dssp             GGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHT
T ss_pred             HhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhCCCCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHc
Confidence            457899999999999876432221  1222222   3789999999999975421              12333333344


Q ss_pred             cCCCCcEEEeecCCCCCCCHHHHHHHHHHHh
Q psy15351         71 QSHISEVIFTNCRNPNCKGVQKILPTLQHIS  101 (352)
Q Consensus        71 ~~~~~~v~~iSa~~~~~~gi~~L~~~i~~~~  101 (352)
                      +..  +++.+||+++  .|++++++.|.+.+
T Consensus       302 ~~~--~~~~~Sa~~~--~gi~~l~~~l~~~~  328 (332)
T 2wkq_A          302 GAV--KYLECSALTQ--RGLKTVFDEAIRAV  328 (332)
T ss_dssp             TCS--EEEECCTTTC--TTHHHHHHHHHHHH
T ss_pred             CCc--EEEEecCCCC--cCHHHHHHHHHHHH
Confidence            442  4899999999  99999999987654

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=97.98  E-value=1e-05  Score=68.65  Aligned_cols=61  Identities=21%  Similarity=0.371  Sum_probs=37.5

Q ss_pred             cceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCC--cEEEEeCCCCCC
Q psy15351        167 YNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKP--LIYILDTPGISL  233 (352)
Q Consensus       167 ~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~--~~~l~DtPGi~~  233 (352)
                      ..++++++|.+|||||||+|.+.+..    ......+..|++... ..+.+ .+.  .+.++||||...
T Consensus        28 ~~~kv~lvG~~g~GKSTLl~~l~~~~----~~~~~~~t~~~~~~~-~~i~~-~g~~~~~~i~Dt~g~~~   90 (191)
T 1oix_A           28 YLFKVVLIGDSGVGKSNLLSRFTRNE----FNLESKSTIGVEFAT-RSIQV-DGKTIKAQIWDTAGLER   90 (191)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHHSC----CCCSCCCCCSEEEEE-EEEEE-TTEEEEEEEEEECSCCS
T ss_pred             cceEEEEECcCCCCHHHHHHHHhcCC----CCCCCCCccceEEEE-EEEEE-CCEEEEEEEEECCCCcc
Confidence            45899999999999999999999731    111222233322211 12223 333  345699999864

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=97.97  E-value=7.2e-06  Score=73.98  Aligned_cols=84  Identities=6%  Similarity=0.070  Sum_probs=50.2

Q ss_pred             cCEEEEEEcCC-CCCCCcCHHHHHHHhCCCCEEEEEEcccCCCccchHH----HHHHHHhhcCCCCcEEEeecCCCCCCC
Q psy15351         15 VDIVIEVHDSR-MPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHESL----IEEKVRKEQSHISEVIFTNCRNPNCKG   89 (352)
Q Consensus        15 aD~vl~VvDar-~p~~~~~~~l~~~l~~~k~~ilVlNK~Dl~~~~~~~~----~~~~~~~~~~~~~~v~~iSa~~~~~~g   89 (352)
                      +|++++++|.. .++...+..+.+.+..++|+++|+||+|+.++.....    +.+.+...++.   ++.+||.++  +|
T Consensus       116 ~~~~l~~i~~~~~~~~~~d~~~l~~l~~~~pvi~V~nK~D~~~~~e~~~~~~~i~~~l~~~~i~---v~~~sa~~~--~~  190 (274)
T 3t5d_A          116 VQCCLYFIAPSGHGLKPLDIEFMKRLHEKVNIIPLIAKADTLTPEECQQFKKQIMKEIQEHKIK---IYEFPETDD--EE  190 (274)
T ss_dssp             CCEEEEEECSCCSSCCHHHHHHHHHHTTTSCEEEEESSGGGSCHHHHHHHHHHHHHHHHHTTCC---CCCC---------
T ss_pred             eeEEEEEecCCCCCCCHHHHHHHHHHhccCCEEEEEeccCCCCHHHHHHHHHHHHHHHHHcCCe---EEcCCCCCC--hh
Confidence            77888888654 4555555555555545789999999999987655433    33344445665   888999999  99


Q ss_pred             HHHHHHHHHHHhhh
Q psy15351         90 VQKILPTLQHISDN  103 (352)
Q Consensus        90 i~~L~~~i~~~~~~  103 (352)
                      ++++.++|.+.++-
T Consensus       191 ~~~l~~~l~~~~p~  204 (274)
T 3t5d_A          191 ENKLVKKIKDRLPL  204 (274)
T ss_dssp             ----CHHHHHTCSE
T ss_pred             HHHHHHHHhcCCCc
Confidence            99999998876653

>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}

Probab=97.97  E-value=4.5e-06  Score=85.19  Aligned_cols=68  Identities=16%  Similarity=0.164  Sum_probs=38.9

Q ss_pred             cceEEEEeCCCCCChHHHHHHHhCC--CCCCC----CceecCC------CCCceeEeeeeEEecCCCcEEEEeCCCCCCC
Q psy15351        167 YNTTVMVVGVPNVGKSSIINALRSS--HMKKG----KAVPVGP------KAGVTRSVMSQVKISEKPLIYILDTPGISLP  234 (352)
Q Consensus       167 ~~~~v~i~G~pnvGKStliN~l~~~--~~~~~----~~~~~~~------~pg~T~~~~~~~~~~~~~~~~l~DtPGi~~~  234 (352)
                      ...+|+++|.+|+|||||+|+|...  .+...    ....+.+      .+|+|...........+..+.|+||||....
T Consensus         9 ~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df   88 (693)
T 2xex_A            9 KTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGHVDF   88 (693)
T ss_dssp             TEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETTEEEEEECCCCCSSC
T ss_pred             cceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECCeeEEEEECcCCcch
Confidence            4578999999999999999999841  11000    0001122      4677766544333334567999999999753

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=97.96  E-value=6.1e-06  Score=77.63  Aligned_cols=26  Identities=42%  Similarity=0.623  Sum_probs=22.9

Q ss_pred             CcceEEEEeCCCCCChHHHHHHHhCC
Q psy15351        166 VYNTTVMVVGVPNVGKSSIINALRSS  191 (352)
Q Consensus       166 ~~~~~v~i~G~pnvGKStliN~l~~~  191 (352)
                      +..++|+++|.+|+|||||+|+|.+.
T Consensus        35 ~~~~~I~vvG~~g~GKSTLln~L~~~   60 (361)
T 2qag_A           35 GFEFTLMVVGESGLGKSTLINSLFLT   60 (361)
T ss_dssp             CCEECEEECCCTTSCHHHHHHHHTTC
T ss_pred             CCCEEEEEEcCCCCCHHHHHHHHhCC
Confidence            45689999999999999999999863

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=97.96  E-value=3.5e-06  Score=70.88  Aligned_cols=85  Identities=18%  Similarity=0.201  Sum_probs=56.3

Q ss_pred             hccCEEEEEEcCCCCCCCcCHHHHHHHh-CCCCEEEEEEcccCCCccch-HHHHHHHHhhcCCCCcEEEeecCCCCCCCH
Q psy15351         13 KNVDIVIEVHDSRMPFTGRNHLLQQSVQ-NIRPMVLVLNKRDLINSKHE-SLIEEKVRKEQSHISEVIFTNCRNPNCKGV   90 (352)
Q Consensus        13 ~~aD~vl~VvDar~p~~~~~~~l~~~l~-~~k~~ilVlNK~Dl~~~~~~-~~~~~~~~~~~~~~~~v~~iSa~~~~~~gi   90 (352)
                      ..+|++++|+|+...  .....+...+. .+.|+++|+||+|+...... ....++.+..+..   ++.+||+++  .|+
T Consensus        84 ~~~~~~i~v~d~~~~--~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~---~~~~Sa~~~--~~v  156 (188)
T 2wjg_A           84 EKPDLVVNIVDATAL--ERNLYLTLQLMEMGANLLLALNKMDLAKSLGIEIDVDKLEKILGVK---VVPLSAAKK--MGI  156 (188)
T ss_dssp             HCCSEEEEEEEGGGH--HHHHHHHHHHHTTTCCEEEEEECHHHHHHTTCCCCHHHHHHHHTSC---EEECBGGGT--BSH
T ss_pred             cCCCEEEEEecchhH--HHHHHHHHHHHhcCCCEEEEEEhhhccccccchHHHHHHHHHhCCC---eEEEEecCC--CCH
Confidence            469999999998742  11112222222 57899999999998643211 1111222233555   999999999  999


Q ss_pred             HHHHHHHHHHhhhc
Q psy15351         91 QKILPTLQHISDNM  104 (352)
Q Consensus        91 ~~L~~~i~~~~~~~  104 (352)
                      +++++++.+.+...
T Consensus       157 ~~l~~~i~~~~~~~  170 (188)
T 2wjg_A          157 EELKKAISIAVKDK  170 (188)
T ss_dssp             HHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHhc
Confidence            99999998877653

>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}

Probab=97.95  E-value=1.9e-06  Score=84.31  Aligned_cols=61  Identities=30%  Similarity=0.460  Sum_probs=44.7

Q ss_pred             cceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCCcEEEEeCCCCCC
Q psy15351        167 YNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISL  233 (352)
Q Consensus       167 ~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~~  233 (352)
                      +..+|+++|.+|+|||||+|+|++      .....+..+|+|.+.........+..+.|+||||...
T Consensus         3 R~~~V~IvGhvd~GKTTLl~~L~~------~~v~~~e~~GIT~~i~~~~v~~~~~~i~~iDTPGhe~   63 (501)
T 1zo1_I            3 RAPVVTIMGHVDHGKTSLLEYIRS------TKVASGEAGGITQHIGAYHVETENGMITFLDTPGHAA   63 (501)
T ss_dssp             CCCCEEEEESTTSSSHHHHHHHHH------HHHSBTTBCCCCCCSSCCCCCTTSSCCCEECCCTTTC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHc------CCCccccCCCeeEeEEEEEEEECCEEEEEEECCCcHH
Confidence            567899999999999999999985      2233455678887654322223456799999999754

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=97.95  E-value=6.4e-06  Score=70.89  Aligned_cols=88  Identities=17%  Similarity=0.087  Sum_probs=57.3

Q ss_pred             HHhhccCEEEEEEcCCCCCCCcC--HHHHHHHh---CCCCEEEEEEcccCCCcc--------------chHHHHHHHHhh
Q psy15351         10 KHLKNVDIVIEVHDSRMPFTGRN--HLLQQSVQ---NIRPMVLVLNKRDLINSK--------------HESLIEEKVRKE   70 (352)
Q Consensus        10 ~~i~~aD~vl~VvDar~p~~~~~--~~l~~~l~---~~k~~ilVlNK~Dl~~~~--------------~~~~~~~~~~~~   70 (352)
                      ..+..+|++|+|+|+.++.+..+  ..+...++   .+.|+++|+||+|+.+..              ..++..++.++.
T Consensus        95 ~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  174 (205)
T 1gwn_A           95 LSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQI  174 (205)
T ss_dssp             GGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHH
T ss_pred             hhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHHc
Confidence            35688999999999987533221  11222222   478999999999997421              112233333343


Q ss_pred             cCCCCcEEEeecC-CCCCCCHHHHHHHHHHHh
Q psy15351         71 QSHISEVIFTNCR-NPNCKGVQKILPTLQHIS  101 (352)
Q Consensus        71 ~~~~~~v~~iSa~-~~~~~gi~~L~~~i~~~~  101 (352)
                      +..  +++.+||+ ++  .|++++++.+.+.+
T Consensus       175 ~~~--~~~e~SAk~~~--~gv~~lf~~l~~~~  202 (205)
T 1gwn_A          175 GAA--TYIECSALQSE--NSVRDIFHVATLAC  202 (205)
T ss_dssp             TCS--EEEECCTTTCH--HHHHHHHHHHHHHH
T ss_pred             CCC--EEEEeeeccCC--cCHHHHHHHHHHHH
Confidence            422  48999998 67  89999998887643

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}

Probab=97.93  E-value=1.1e-05  Score=79.86  Aligned_cols=88  Identities=20%  Similarity=0.308  Sum_probs=58.0

Q ss_pred             HHhhccCEEEEEEcCCCCCCCcCHHHHHHHh---CCCCEEEEEEcccCCCccc--hHHHHHHHHhhcCCCCcEEEeecCC
Q psy15351         10 KHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQ---NIRPMVLVLNKRDLINSKH--ESLIEEKVRKEQSHISEVIFTNCRN   84 (352)
Q Consensus        10 ~~i~~aD~vl~VvDar~p~~~~~~~l~~~l~---~~k~~ilVlNK~Dl~~~~~--~~~~~~~~~~~~~~~~~v~~iSa~~   84 (352)
                      ..+..+|++|+|+|++.+  .....+...+.   .+.|+++|+||+|+.+...  .+...+.+...+.+   ++.+||++
T Consensus       117 ~~l~~~d~ii~V~D~s~~--~~~~~~~~~l~~~~~~~pvilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~---~~~vSA~~  191 (535)
T 3dpu_A          117 FFMTRSSVYMLLLDSRTD--SNKHYWLRHIEKYGGKSPVIVVMNKIDENPSYNIEQKKINERFPAIENR---FHRISCKN  191 (535)
T ss_dssp             HHHHSSEEEEEEECGGGG--GGHHHHHHHHHHHSSSCCEEEEECCTTTCTTCCCCHHHHHHHCGGGTTC---EEECCC--
T ss_pred             HHccCCcEEEEEEeCCCc--hhHHHHHHHHHHhCCCCCEEEEEECCCcccccccCHHHHHHHHHhcCCc---eEEEecCc
Confidence            356789999999999754  22222333332   4589999999999986543  33444444444554   99999999


Q ss_pred             CCCCCHHHHHHHHHHHhhhc
Q psy15351         85 PNCKGVQKILPTLQHISDNM  104 (352)
Q Consensus        85 ~~~~gi~~L~~~i~~~~~~~  104 (352)
                      +  .|+++|++.+.+.+...
T Consensus       192 g--~gi~eL~~~l~~~~~~~  209 (535)
T 3dpu_A          192 G--DGVESIAKSLKSAVLHP  209 (535)
T ss_dssp             -----CTTHHHHHHHHHTCT
T ss_pred             c--cCHHHHHHHHHHHHhcc
Confidence            9  99999999998877653

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=97.93  E-value=4.5e-06  Score=75.41  Aligned_cols=80  Identities=19%  Similarity=0.277  Sum_probs=55.8

Q ss_pred             hccCEEEEEEcCCCCCCCcCHHHHHHHh-CCCCEEEEEEcccCCCccc----hHHHHHHHHhhcCCCCcEEEeecCCCCC
Q psy15351         13 KNVDIVIEVHDSRMPFTGRNHLLQQSVQ-NIRPMVLVLNKRDLINSKH----ESLIEEKVRKEQSHISEVIFTNCRNPNC   87 (352)
Q Consensus        13 ~~aD~vl~VvDar~p~~~~~~~l~~~l~-~~k~~ilVlNK~Dl~~~~~----~~~~~~~~~~~~~~~~~v~~iSa~~~~~   87 (352)
                      ..+|++++|+|+.+.  ..+..+...+. .+.|+++|+||+|+.....    ...+.+   ..+.+   ++.+||+++  
T Consensus        79 ~~~d~vi~V~D~t~~--e~~~~~~~~l~~~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~---~lg~~---vi~~SA~~g--  148 (272)
T 3b1v_A           79 QRADSILNVVDATNL--ERNLYLTTQLIETGIPVTIALNMIDVLDGQGKKINVDKLSY---HLGVP---VVATSALKQ--  148 (272)
T ss_dssp             TCCSEEEEEEEGGGH--HHHHHHHHHHHHTCSCEEEEEECHHHHHHTTCCCCHHHHHH---HHTSC---EEECBTTTT--
T ss_pred             CCCCEEEEEecCCch--HhHHHHHHHHHhcCCCEEEEEEChhhCCcCCcHHHHHHHHH---HcCCC---EEEEEccCC--
Confidence            479999999999763  11222222222 6899999999999864321    222322   33665   999999999  


Q ss_pred             CCHHHHHHHHHHHhh
Q psy15351         88 KGVQKILPTLQHISD  102 (352)
Q Consensus        88 ~gi~~L~~~i~~~~~  102 (352)
                      .|++++++++.+.+.
T Consensus       149 ~gi~el~~~i~~~~~  163 (272)
T 3b1v_A          149 TGVDQVVKKAAHTTT  163 (272)
T ss_dssp             BSHHHHHHHHHHSCT
T ss_pred             CCHHHHHHHHHHHHh
Confidence            999999999877554

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=97.93  E-value=5.8e-06  Score=74.45  Aligned_cols=85  Identities=26%  Similarity=0.397  Sum_probs=58.0

Q ss_pred             hhccCEEEEEEcCCCCCCCcCHHHH-HHHhCC-CCEEEEEEcccCCCccchHHHHHHH-HhhcCCCCcEEEeecCCCCCC
Q psy15351         12 LKNVDIVIEVHDSRMPFTGRNHLLQ-QSVQNI-RPMVLVLNKRDLINSKHESLIEEKV-RKEQSHISEVIFTNCRNPNCK   88 (352)
Q Consensus        12 i~~aD~vl~VvDar~p~~~~~~~l~-~~l~~~-k~~ilVlNK~Dl~~~~~~~~~~~~~-~~~~~~~~~v~~iSa~~~~~~   88 (352)
                      ..++|++++|+|++++.  .+..+. ++...+ .|+++|+||+|+.+........+.+ +..+.+   ++++||+++  .
T Consensus        79 ~~~~d~vi~v~D~~~~~--~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~lg~~---~~~~Sa~~g--~  151 (271)
T 3k53_A           79 DGNADVIVDIVDSTCLM--RNLFLTLELFEMEVKNIILVLNKFDLLKKKGAKIDIKKMRKELGVP---VIPTNAKKG--E  151 (271)
T ss_dssp             TTCCSEEEEEEEGGGHH--HHHHHHHHHHHTTCCSEEEEEECHHHHHHHTCCCCHHHHHHHHSSC---EEECBGGGT--B
T ss_pred             ccCCcEEEEEecCCcch--hhHHHHHHHHhcCCCCEEEEEEChhcCcccccHHHHHHHHHHcCCc---EEEEEeCCC--C
Confidence            37899999999998641  122222 222345 9999999999986543211112222 234665   999999999  9


Q ss_pred             CHHHHHHHHHHHhhh
Q psy15351         89 GVQKILPTLQHISDN  103 (352)
Q Consensus        89 gi~~L~~~i~~~~~~  103 (352)
                      |++++++.+.+.+..
T Consensus       152 gi~~l~~~i~~~~~~  166 (271)
T 3k53_A          152 GVEELKRMIALMAEG  166 (271)
T ss_dssp             THHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHhc
Confidence            999999999877654

>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*

Probab=97.93  E-value=5.8e-06  Score=80.82  Aligned_cols=65  Identities=22%  Similarity=0.269  Sum_probs=36.5

Q ss_pred             cceEEEEeCCCCCChHHHHHHHhCCCCCC-CCceecCCCCCceeEeeeeEEecCCCcEEEEeCCCC
Q psy15351        167 YNTTVMVVGVPNVGKSSIINALRSSHMKK-GKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGI  231 (352)
Q Consensus       167 ~~~~v~i~G~pnvGKStliN~l~~~~~~~-~~~~~~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi  231 (352)
                      +.++|+++|.+|+|||||+|+|++..... -........+|+|.+.........+..+.++||||.
T Consensus        18 ~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~iiDtPGh   83 (482)
T 1wb1_A           18 KNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGH   83 (482)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSH
T ss_pred             CCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECCEEEEEEECCCh
Confidence            46899999999999999999999732000 001234567788887654333334557999999996

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}

Probab=97.16  E-value=1.3e-06  Score=74.84  Aligned_cols=61  Identities=18%  Similarity=0.153  Sum_probs=37.4

Q ss_pred             CcceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCC--cEEEEeCCCCCC
Q psy15351        166 VYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKP--LIYILDTPGISL  233 (352)
Q Consensus       166 ~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~--~~~l~DtPGi~~  233 (352)
                      ...++|+++|.+|||||||+|++.+...       ......++.+.........+.  .+.++||||...
T Consensus        28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~-------~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~   90 (204)
T 3th5_A           28 GQAIKCVVVGDGAVGKTCLLISYTTNAF-------PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED   90 (204)
Confidence            4579999999999999999999985211       122223332221111111122  456999999754

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=97.92  E-value=1.9e-05  Score=68.47  Aligned_cols=86  Identities=16%  Similarity=0.074  Sum_probs=56.1

Q ss_pred             hhccCEEEEEEcCCCCCCCcC-HHHHH-HHh----CCCCEEEEEEcccCCCccc--hHHHHHHHHhhcCCCCcEEEeecC
Q psy15351         12 LKNVDIVIEVHDSRMPFTGRN-HLLQQ-SVQ----NIRPMVLVLNKRDLINSKH--ESLIEEKVRKEQSHISEVIFTNCR   83 (352)
Q Consensus        12 i~~aD~vl~VvDar~p~~~~~-~~l~~-~l~----~~k~~ilVlNK~Dl~~~~~--~~~~~~~~~~~~~~~~~v~~iSa~   83 (352)
                      ...+|++++|.|..++.+... ..+.. +..    .+.|+++|.||+||.....  .++...+....+..   ++.+||+
T Consensus       109 ~~~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~~e~~~~a~~~~~~---~~e~SAk  185 (211)
T 2g3y_A          109 MQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCK---FIETSAA  185 (211)
T ss_dssp             CCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCE---EEECBTT
T ss_pred             HhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCceEeHHHHHHHHHHcCCE---EEEEeCC
Confidence            456899999999876432211 11222 221    3689999999999975322  22222222334444   8899999


Q ss_pred             CCCCCCHHHHHHHHHHHhh
Q psy15351         84 NPNCKGVQKILPTLQHISD  102 (352)
Q Consensus        84 ~~~~~gi~~L~~~i~~~~~  102 (352)
                      ++  .|++++++++.+.+.
T Consensus       186 ~g--~~v~elf~~l~~~i~  202 (211)
T 2g3y_A          186 VQ--HNVKELFEGIVRQVR  202 (211)
T ss_dssp             TT--BSHHHHHHHHHHHHH
T ss_pred             CC--CCHHHHHHHHHHHHH
Confidence            99  999999999876554

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*

Probab=97.92  E-value=1.4e-05  Score=73.62  Aligned_cols=61  Identities=18%  Similarity=0.142  Sum_probs=40.5

Q ss_pred             CcceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCCc--EEEEeCCCCCC
Q psy15351        166 VYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPL--IYILDTPGISL  233 (352)
Q Consensus       166 ~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~--~~l~DtPGi~~  233 (352)
                      ...++|+++|.+|||||||+|++.+..       .....++||.+.........+..  +.++||||...
T Consensus       153 ~~~~~i~i~G~~~~GKssli~~~~~~~-------~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~  215 (332)
T 2wkq_A          153 KELIKCVVVGDGAVGKTCLLISYTTNA-------FPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLED  215 (332)
T ss_dssp             TTCEEEEEEESTTSSHHHHHHHHHHSC-------CCCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGG
T ss_pred             cceeEEEEECCCCCChHHHHHHHHhCC-------CCcccCCcccceeEEEEEECCEEEEEEEEeCCCchh
Confidence            467999999999999999999998621       12334455554433222223333  55999999754

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}

Probab=97.92  E-value=9.3e-06  Score=80.43  Aligned_cols=64  Identities=16%  Similarity=0.219  Sum_probs=35.9

Q ss_pred             CcceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeee-----eEEec---CCCcEEEEeCCCCCC
Q psy15351        166 VYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMS-----QVKIS---EKPLIYILDTPGISL  233 (352)
Q Consensus       166 ~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~-----~~~~~---~~~~~~l~DtPGi~~  233 (352)
                      ...++|+++|.||||||||+|++++....    ....++.|.+.....     .+...   .+..+.++||||...
T Consensus        39 ~~~~kV~lvG~~~vGKSSLl~~l~~~~~~----~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~  110 (535)
T 3dpu_A           39 LQEIKVHLIGDGMAGKTSLLKQLIGETFD----PKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEI  110 (535)
T ss_dssp             CCEEEEEEESSSCSSHHHHHHHHHC---------------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCT
T ss_pred             ccceEEEEECCCCCCHHHHHHHHhcCCCC----CCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHH
Confidence            35689999999999999999999973221    122223332222100     01111   134689999999543

>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*

Probab=97.91  E-value=3.1e-05  Score=74.61  Aligned_cols=87  Identities=13%  Similarity=0.106  Sum_probs=56.6

Q ss_pred             hHHHHHHHHhhccCEEEEEEcCCCC-------CCCcCHHHHHHHh-CC-CCEEEEEEcccCCCc----cc----hHHHHH
Q psy15351          3 RGLKDIEKHLKNVDIVIEVHDSRMP-------FTGRNHLLQQSVQ-NI-RPMVLVLNKRDLINS----KH----ESLIEE   65 (352)
Q Consensus         3 ~~~~~~~~~i~~aD~vl~VvDar~p-------~~~~~~~l~~~l~-~~-k~~ilVlNK~Dl~~~----~~----~~~~~~   65 (352)
                      +....+...+..+|++|+|+|++++       +.........++. .+ +++++|+||+|+.+.    +.    .++..+
T Consensus        96 ~f~~~~~~~~~~aD~~ilVvDa~~gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~~~~~~~~~~~~i~~  175 (435)
T 1jny_A           96 DFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPPYDEKRYKEIVDQVSK  175 (435)
T ss_dssp             THHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSSSTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhhhhcCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCCCccccHHHHHHHHHHHHH
Confidence            3455677889999999999999975       3222222222222 34 468999999999873    11    233344


Q ss_pred             HHHhhcCCC--CcEEEeecCCCCCCCHH
Q psy15351         66 KVRKEQSHI--SEVIFTNCRNPNCKGVQ   91 (352)
Q Consensus        66 ~~~~~~~~~--~~v~~iSa~~~~~~gi~   91 (352)
                      +++..++..  .+++++||+++  .|+.
T Consensus       176 ~~~~~~~~~~~~~~i~iSA~~g--~~v~  201 (435)
T 1jny_A          176 FMRSYGFNTNKVRFVPVVAPSG--DNIT  201 (435)
T ss_dssp             HHHHTTCCCTTCEEEECBTTTT--BTTT
T ss_pred             HHHHcCCCcCCceEEEeecccC--cccc
Confidence            444444321  25899999999  9886

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=97.91  E-value=2.4e-05  Score=69.60  Aligned_cols=94  Identities=11%  Similarity=0.099  Sum_probs=59.9

Q ss_pred             HHHHhhccCEEEEEEcCCCCCCCcCHH-HH----HHHh-CCCCEEEEEEcccCCCccchHHHHHHH--------------
Q psy15351          8 IEKHLKNVDIVIEVHDSRMPFTGRNHL-LQ----QSVQ-NIRPMVLVLNKRDLINSKHESLIEEKV--------------   67 (352)
Q Consensus         8 ~~~~i~~aD~vl~VvDar~p~~~~~~~-l~----~~l~-~~k~~ilVlNK~Dl~~~~~~~~~~~~~--------------   67 (352)
                      +.+.+.. +++++|+|+.......+.. ..    .... .+.|.++|+||+|+.+.....+..+++              
T Consensus       132 ~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~~iv~NK~D~~~~~~~~~~~~~l~~~~~~~~~l~~~~  210 (262)
T 1yrb_A          132 LMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLLSEEEKERHRKYFEDIDYLTARLKLDP  210 (262)
T ss_dssp             HHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHTSCEEEEECCGGGCCHHHHHHHHHHHHCHHHHHHHHHHCC
T ss_pred             HHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcccCCCeEEEEecccccccccHHHHHHHHhChHHHHHHHhccc
Confidence            4456667 9999999987543322211 00    1111 468999999999998754322221111              


Q ss_pred             --------------HhhcCCCCcEEEeecCCCCCCCHHHHHHHHHHHhhhcc
Q psy15351         68 --------------RKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMT  105 (352)
Q Consensus        68 --------------~~~~~~~~~v~~iSa~~~~~~gi~~L~~~i~~~~~~~~  105 (352)
                                    .+.+. ..+++.+||+++  +|+++|+++|.+.++..+
T Consensus       211 ~~~~~~~~~l~~~~~~~~~-~~~~~~~SA~~~--~gi~~l~~~i~~~~~~~~  259 (262)
T 1yrb_A          211 SMQGLMAYKMCSMMTEVLP-PVRVLYLSAKTR--EGFEDLETLAYEHYCTCG  259 (262)
T ss_dssp             SHHHHHHHHHHHHHHHHSC-CCCCEECCTTTC--TTHHHHHHHHHHHHHHHC
T ss_pred             cccchhHhHHHHHHHHhcC-cccceEEEecCc--ccHHHHHHHHHHHhcccc
Confidence                          22221 114899999999  999999999998877543

>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...

Probab=97.91  E-value=5.6e-06  Score=79.08  Aligned_cols=68  Identities=18%  Similarity=0.136  Sum_probs=43.4

Q ss_pred             CcceEEEEeCCCCCChHHHHHHHhCCCCCCCC--c---e-e-----cCCCCCceeEeeeeEEecCCCcEEEEeCCCCCC
Q psy15351        166 VYNTTVMVVGVPNVGKSSIINALRSSHMKKGK--A---V-P-----VGPKAGVTRSVMSQVKISEKPLIYILDTPGISL  233 (352)
Q Consensus       166 ~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~--~---~-~-----~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~~  233 (352)
                      ...++|+++|.+|+|||||+|+|++.......  .   . .     ....+|+|.+.........+..+.++||||...
T Consensus         9 ~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~   87 (405)
T 2c78_A            9 KPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHAD   87 (405)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGG
T ss_pred             CCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHH
Confidence            45689999999999999999999862000000  0   0 0     011467776654322333446799999999764

>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A

Probab=97.89  E-value=5.3e-06  Score=84.74  Aligned_cols=89  Identities=12%  Similarity=0.187  Sum_probs=64.0

Q ss_pred             hccCEEEEEEcCCCCCCCcCH-HHHHHHh-CCCCEEEEEEcccCCCccchHHHHHHHHhhc----CCCCcEEEeecCCCC
Q psy15351         13 KNVDIVIEVHDSRMPFTGRNH-LLQQSVQ-NIRPMVLVLNKRDLINSKHESLIEEKVRKEQ----SHISEVIFTNCRNPN   86 (352)
Q Consensus        13 ~~aD~vl~VvDar~p~~~~~~-~l~~~l~-~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~----~~~~~v~~iSa~~~~   86 (352)
                      ..+|+|++|+|++.++...+. .+.+.+. .++|+++|+||+|++++....  ........    ..+.+++++||+++ 
T Consensus       186 ~~aDlIL~VVDAs~~~~~~d~l~ll~~L~~~g~pvIlVlNKiDlv~~~~~~--~~il~~~~~~l~lg~~~VV~iSA~~G-  262 (772)
T 3zvr_A          186 KENCLILAVSPANSDLANSDALKIAKEVDPQGQRTIGVITKLDLMDEGTDA--RDVLENKLLPLRRGYIGVVNRSQKDI-  262 (772)
T ss_dssp             STTEEEEEEEETTSCSSSCHHHHHHHHHCTTCSSEEEEEECTTSSCTTCCS--HHHHTTCSSCCSSCEEECCCCCCEES-
T ss_pred             cCCcEEEEEEcCCCCcchhHHHHHHHHHHhcCCCEEEEEeCcccCCcchhh--HHHHHHHhhhhhccCCceEEeccccc-
Confidence            688999999999988776665 4666554 578999999999999765321  11111111    12336888999999 


Q ss_pred             CCCHHHHHHHHHH---Hhhhcc
Q psy15351         87 CKGVQKILPTLQH---ISDNMT  105 (352)
Q Consensus        87 ~~gi~~L~~~i~~---~~~~~~  105 (352)
                       .|+++|++.+.+   .+++.+
T Consensus       263 -~GvdeL~eaI~~e~~ffpe~P  283 (772)
T 3zvr_A          263 -DGKKDITAALAAERKFFLSHP  283 (772)
T ss_dssp             -SSSEEHHHHHHHHHHHHHHCT
T ss_pred             -ccchhHHHHHHHHHHhccCCc
Confidence             999999999876   465544

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=97.88  E-value=7.6e-06  Score=74.38  Aligned_cols=89  Identities=12%  Similarity=0.199  Sum_probs=59.5

Q ss_pred             HHHHHhhccCEEE-EEEcCCCCCCCcCH-HHHHHHh-CCCCEEEEEEcccCCCccchHHHHHHHHhh--cC--CCCcEEE
Q psy15351          7 DIEKHLKNVDIVI-EVHDSRMPFTGRNH-LLQQSVQ-NIRPMVLVLNKRDLINSKHESLIEEKVRKE--QS--HISEVIF   79 (352)
Q Consensus         7 ~~~~~i~~aD~vl-~VvDar~p~~~~~~-~l~~~l~-~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~--~~--~~~~v~~   79 (352)
                      .+...+..+|.++ +|+|+..++...+. .+.+.+. .+.|+++|+||+|+.++...  +.+.++..  ..  .+.+++.
T Consensus       154 ~~~~~~~~~~~~il~v~d~~~~~~~~~~~~~~~~~~~~~~~~i~V~NK~Dl~~~~~~--~~~~~~~~~~~~~~~~~~v~~  231 (299)
T 2aka_B          154 MLMQFVTKENCLILAVSPANSDLANSDALKIAKEVDPQGQRTIGVITKLDLMDEGTD--ARDVLENKLLPLRRGYIGVVN  231 (299)
T ss_dssp             HHHHHHTSTTEEEEEEEESSSCGGGCHHHHHHHHHCTTCSSEEEEEECGGGSCTTCC--CHHHHTTCSSCCTTCEEECCC
T ss_pred             HHHHHHcCCCeEEEEEecCCcchhhhHHHHHHHHhCCCCCeEEEEEEccccCCCCch--HHHHHhCCcCcCCCCcEEEEC
Confidence            3556777887555 79999887655442 3444443 57899999999999875431  12222221  11  1225778


Q ss_pred             eecCCCCCCCHHHHHHHHHH
Q psy15351         80 TNCRNPNCKGVQKILPTLQH   99 (352)
Q Consensus        80 iSa~~~~~~gi~~L~~~i~~   99 (352)
                      +||+++  .|++++++++.+
T Consensus       232 ~SA~~~--~gi~~l~~~l~~  249 (299)
T 2aka_B          232 RSQKDI--DGKKDITAALAA  249 (299)
T ss_dssp             CCCBCT--TSCBCHHHHHHH
T ss_pred             CChhhc--cccccHHHHHHH
Confidence            999999  999999998875

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=97.88  E-value=2.5e-05  Score=66.38  Aligned_cols=89  Identities=11%  Similarity=0.128  Sum_probs=56.1

Q ss_pred             HHHhhccCEEEEEEcCCCCCCCcCHHHHHHHh------CCCCEEEEEEcccCCCccch----H----HHHHHHHhhc--C
Q psy15351          9 EKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQ------NIRPMVLVLNKRDLINSKHE----S----LIEEKVRKEQ--S   72 (352)
Q Consensus         9 ~~~i~~aD~vl~VvDar~p~~~~~~~l~~~l~------~~k~~ilVlNK~Dl~~~~~~----~----~~~~~~~~~~--~   72 (352)
                      ...+..+|++|+|+|++++.......+..++.      .+.|+++|.||+|+.+.+..    .    ...+.+.+..  .
T Consensus        90 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~~  169 (196)
T 3llu_A           90 EMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEK  169 (196)
T ss_dssp             HHHHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTCTT
T ss_pred             ccccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhhhc
Confidence            46678899999999999863222233333332      47899999999999874321    1    1122222211  0


Q ss_pred             CCCcEEEeecCCCCCCCHHHHHHHHHHH
Q psy15351         73 HISEVIFTNCRNPNCKGVQKILPTLQHI  100 (352)
Q Consensus        73 ~~~~v~~iSa~~~~~~gi~~L~~~i~~~  100 (352)
                      ...+++.+||++   .|++++++.+.+.
T Consensus       170 ~~~~~~e~Sa~~---~~v~~~f~~l~~~  194 (196)
T 3llu_A          170 LHLSFYLTSIYD---HSIFEAFSKVVQK  194 (196)
T ss_dssp             SCEEEEEECTTS---THHHHHHHHHHHH
T ss_pred             CCcceEEEEech---hhHHHHHHHHHHH
Confidence            011478899987   6899998887643

>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A

Probab=97.88  E-value=3e-06  Score=82.35  Aligned_cols=66  Identities=24%  Similarity=0.267  Sum_probs=42.4

Q ss_pred             cceEEEEeCCCCCChHHHHHHHhCC--CCCCC-----------------Cceec------CCCCCceeEeeeeEEecCCC
Q psy15351        167 YNTTVMVVGVPNVGKSSIINALRSS--HMKKG-----------------KAVPV------GPKAGVTRSVMSQVKISEKP  221 (352)
Q Consensus       167 ~~~~v~i~G~pnvGKStliN~l~~~--~~~~~-----------------~~~~~------~~~pg~T~~~~~~~~~~~~~  221 (352)
                      ..++|+++|.+|+|||||+|+|++.  .+...                 ..+.+      ...+|.|.+.........+.
T Consensus         6 ~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~~~   85 (458)
T 1f60_A            6 SHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKY   85 (458)
T ss_dssp             EEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSSE
T ss_pred             ceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecCCc
Confidence            4689999999999999999999852  00000                 00000      11367787665433333455


Q ss_pred             cEEEEeCCCCC
Q psy15351        222 LIYILDTPGIS  232 (352)
Q Consensus       222 ~~~l~DtPGi~  232 (352)
                      .+.++||||..
T Consensus        86 ~~~iiDtPGh~   96 (458)
T 1f60_A           86 QVTVIDAPGHR   96 (458)
T ss_dssp             EEEEEECCCCT
T ss_pred             eEEEEECCCcH
Confidence            79999999964

>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*

Probab=97.88  E-value=1e-05  Score=77.16  Aligned_cols=66  Identities=20%  Similarity=0.219  Sum_probs=42.4

Q ss_pred             cceEEEEeCCCCCChHHHHHHHhCCCCCCCCc----------eecCCCCCceeEeeeeEEecCCCcEEEEeCCCCC
Q psy15351        167 YNTTVMVVGVPNVGKSSIINALRSSHMKKGKA----------VPVGPKAGVTRSVMSQVKISEKPLIYILDTPGIS  232 (352)
Q Consensus       167 ~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~----------~~~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~  232 (352)
                      +.++|+++|.+|+|||||+|+|++........          .......|.|.+.........+..+.++||||..
T Consensus         2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~   77 (397)
T 1d2e_A            2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHA   77 (397)
T ss_dssp             CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHH
T ss_pred             CeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChH
Confidence            35789999999999999999998521000000          0011246778775432222344679999999964

>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*

Probab=97.87  E-value=1.2e-05  Score=69.96  Aligned_cols=61  Identities=20%  Similarity=0.317  Sum_probs=34.1

Q ss_pred             cceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCC--cEEEEeCCCCCC
Q psy15351        167 YNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKP--LIYILDTPGISL  233 (352)
Q Consensus       167 ~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~--~~~l~DtPGi~~  233 (352)
                      +.++|+++|.+|||||||++++.....    .....++-|..  .........+.  .+.++||+|-..
T Consensus        12 k~~KivlvGd~~VGKTsLi~r~~~~~f----~~~~~~Tig~d--~~~k~~~~~~~~v~l~iwDtaGqe~   74 (216)
T 4dkx_A           12 RKFKLVFLGEQSVGKTSLITRFMYDSF----DNTYQATIGID--FLSKTMYLEDRTIRLQLWDTAGLER   74 (216)
T ss_dssp             -CEEEEEECSTTSSHHHHHHHHHHSCC----C------------CEEEEEECSSCEEEEEEECCSCTTT
T ss_pred             CcEEEEEECcCCcCHHHHHHHHHhCCC----CCCcCCccceE--EEEEEEEecceEEEEEEEECCCchh
Confidence            458999999999999999999985321    11122222221  11111112222  467999999654

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=97.86  E-value=1e-05  Score=75.50  Aligned_cols=25  Identities=28%  Similarity=0.413  Sum_probs=22.4

Q ss_pred             CcceEEEEeCCCCCChHHHHHHHhC
Q psy15351        166 VYNTTVMVVGVPNVGKSSIINALRS  190 (352)
Q Consensus       166 ~~~~~v~i~G~pnvGKStliN~l~~  190 (352)
                      .....++++|.||+||||++|.|.+
T Consensus        54 ~~~~~i~i~G~~g~GKSTl~~~l~~   78 (341)
T 2p67_A           54 GNTLRLGVTGTPGAGKSTFLEAFGM   78 (341)
T ss_dssp             SCSEEEEEEECTTSCHHHHHHHHHH
T ss_pred             CCCEEEEEEcCCCCCHHHHHHHHHH
Confidence            4678899999999999999999963

>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B

Probab=97.86  E-value=5.5e-05  Score=80.06  Aligned_cols=99  Identities=11%  Similarity=0.020  Sum_probs=67.1

Q ss_pred             HHHHHHHHhhccCEEEEEEcCCCCCCCcCHHHHHHHh-CCCC-EEEEEEcccCCCccc-h----HHHHHHHHhhcCC--C
Q psy15351          4 GLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQ-NIRP-MVLVLNKRDLINSKH-E----SLIEEKVRKEQSH--I   74 (352)
Q Consensus         4 ~~~~~~~~i~~aD~vl~VvDar~p~~~~~~~l~~~l~-~~k~-~ilVlNK~Dl~~~~~-~----~~~~~~~~~~~~~--~   74 (352)
                      ..+.+...+..+|++|+|+|++++......+....+. .+.| +++|+||+|+.+... .    .+..+++.+.++.  .
T Consensus       372 F~~~mi~gas~AD~aILVVDAtdGv~~QTrEhL~ll~~lgIP~IIVVINKiDLv~d~e~le~i~eEi~elLk~~G~~~~~  451 (1289)
T 3avx_A          372 YVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFPGDD  451 (1289)
T ss_dssp             HHHHHHHTSCCCSEEEEEEETTTCSCTTHHHHHHHHHHHTCSCEEEEEECCTTCCCHHHHHHHHHHHHHHHHHTTSCTTT
T ss_pred             HHHHHHHHHhhCCEEEEEEcCCccCcHHHHHHHHHHHHcCCCeEEEEEeecccccchhhHHHHHHHHHHHHHhccccccc
Confidence            4556777889999999999999876555444434333 4677 789999999986322 1    2334445444431  1


Q ss_pred             CcEEEeecCCCCC------CCHHHHHHHHHHHhh
Q psy15351         75 SEVIFTNCRNPNC------KGVQKILPTLQHISD  102 (352)
Q Consensus        75 ~~v~~iSa~~~~~------~gi~~L~~~i~~~~~  102 (352)
                      .+++++||+++..      .|+.+|++.|.+.++
T Consensus       452 vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~Ip  485 (1289)
T 3avx_A          452 TPIVRGSALKALEGDAEWEAKILELAGFLDSYIP  485 (1289)
T ss_dssp             CCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTSC
T ss_pred             eeEEEEEeccCCCCCccccccchhhHhHHhhhcC
Confidence            2599999999710      257888888887665

>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*

Probab=97.85  E-value=1.1e-05  Score=79.71  Aligned_cols=68  Identities=18%  Similarity=0.220  Sum_probs=38.4

Q ss_pred             cceEEEEeCCCCCChHHHHHHHhCCC--CCCC-C-------ceec------CCCCCceeEeeeeEEecCCCcEEEEeCCC
Q psy15351        167 YNTTVMVVGVPNVGKSSIINALRSSH--MKKG-K-------AVPV------GPKAGVTRSVMSQVKISEKPLIYILDTPG  230 (352)
Q Consensus       167 ~~~~v~i~G~pnvGKStliN~l~~~~--~~~~-~-------~~~~------~~~pg~T~~~~~~~~~~~~~~~~l~DtPG  230 (352)
                      ...+|+++|.+|+|||||+|+|+...  +... .       ...+      ....|+|...........+..+.++||||
T Consensus        12 ~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTPG   91 (529)
T 2h5e_A           12 KRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTPG   91 (529)
T ss_dssp             TEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCCC
T ss_pred             CCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECCC
Confidence            45789999999999999999998521  1000 0       0111      12455555433222233455799999999


Q ss_pred             CCCC
Q psy15351        231 ISLP  234 (352)
Q Consensus       231 i~~~  234 (352)
                      ....
T Consensus        92 ~~df   95 (529)
T 2h5e_A           92 HEDF   95 (529)
T ss_dssp             STTC
T ss_pred             ChhH
Confidence            8653

>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=97.84  E-value=1.3e-05  Score=77.21  Aligned_cols=25  Identities=24%  Similarity=0.247  Sum_probs=22.4

Q ss_pred             CcceEEEEeCCCCCChHHHHHHHhC
Q psy15351        166 VYNTTVMVVGVPNVGKSSIINALRS  190 (352)
Q Consensus       166 ~~~~~v~i~G~pnvGKStliN~l~~  190 (352)
                      ...++|+++|.+|+|||||+|+|++
T Consensus        22 ~~~~~i~iiG~~~~GKSTLi~~Ll~   46 (434)
T 1zun_B           22 KEMLRFLTCGNVDDGKSTLIGRLLH   46 (434)
T ss_dssp             CEEEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCceEEEEEECCCCCHHHHHHHHHh
Confidence            3458999999999999999999985

>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*

Probab=97.84  E-value=9.4e-06  Score=77.47  Aligned_cols=26  Identities=23%  Similarity=0.376  Sum_probs=23.6

Q ss_pred             CcceEEEEeCCCCCChHHHHHHHhCC
Q psy15351        166 VYNTTVMVVGVPNVGKSSIINALRSS  191 (352)
Q Consensus       166 ~~~~~v~i~G~pnvGKStliN~l~~~  191 (352)
                      .+.++|+++|.+|+|||||+|+|++.
T Consensus         6 ~~~~~I~vvG~~~~GKSTLi~~L~~~   31 (403)
T 3sjy_A            6 QPEVNIGVVGHVDHGKTTLVQAITGI   31 (403)
T ss_dssp             CCCCEEEEECSTTSSHHHHHHHHHSC
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhCc
Confidence            45789999999999999999999973

>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}

Probab=97.81  E-value=8.9e-06  Score=76.74  Aligned_cols=50  Identities=18%  Similarity=0.290  Sum_probs=38.0

Q ss_pred             EEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCCcEEEEeCCCCCC
Q psy15351        170 TVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISL  233 (352)
Q Consensus       170 ~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~~  233 (352)
                      +|+++|.+|+|||||+|+|+              .+|+|.+.........+..+.++||||...
T Consensus        23 ~i~iiG~~d~GKSTL~~~L~--------------~~giTi~~~~~~~~~~~~~i~iiDtPGh~~   72 (370)
T 2elf_A           23 NVAIIGTEKSGRTSLAANLG--------------KKGTSSDITMYNNDKEGRNMVFVDAHSYPK   72 (370)
T ss_dssp             EEEEEESTTSSHHHHHHTTS--------------EEEEESSSEEEEECSSSSEEEEEECTTTTT
T ss_pred             EEEEECCCCCCHHHHHHHHH--------------hCCEEEEeeEEEEecCCeEEEEEECCChHH
Confidence            89999999999999999996              245565544333333455799999999864

>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}

Probab=97.80  E-value=6.3e-06  Score=81.29  Aligned_cols=91  Identities=13%  Similarity=0.053  Sum_probs=61.4

Q ss_pred             HHhhccCEEEEEEcCCCCCCCcCHHHHHHHh-CCCCEEEEEEcccCCCccc--hHHHHHHHHhh--cC-CCCcEEEeecC
Q psy15351         10 KHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQ-NIRPMVLVLNKRDLINSKH--ESLIEEKVRKE--QS-HISEVIFTNCR   83 (352)
Q Consensus        10 ~~i~~aD~vl~VvDar~p~~~~~~~l~~~l~-~~k~~ilVlNK~Dl~~~~~--~~~~~~~~~~~--~~-~~~~v~~iSa~   83 (352)
                      ..+..+|++|+|+|++++......+....+. .+.|+++|+||+|+.+...  ....+..+...  .+ ...+++++||+
T Consensus        71 ~~~~~aD~vILVVDa~dg~~~qt~e~l~~~~~~~vPiIVViNKiDl~~~~~~~v~~~l~~~~~~~e~~~~~~~iv~vSAk  150 (537)
T 3izy_P           71 RGTQVTDIVILVVAADDGVMKQTVESIQHAKDAHVPIVLAINKCDKAEADPEKVKKELLAYDVVCEDYGGDVQAVHVSAL  150 (537)
T ss_dssp             SSSBSBSSCEEECBSSSCCCHHHHHHHHHHHTTTCCEEECCBSGGGTTTSCCSSSSHHHHTTSCCCCSSSSEEECCCCSS
T ss_pred             HHHccCCEEEEEEECCCCccHHHHHHHHHHHHcCCcEEEEEecccccccchHHHHHHHHhhhhhHHhcCCCceEEEEECC
Confidence            3567899999999999876654444444444 6789999999999975432  11111111000  00 01258889999


Q ss_pred             CCCCCCHHHHHHHHHHHhh
Q psy15351         84 NPNCKGVQKILPTLQHISD  102 (352)
Q Consensus        84 ~~~~~gi~~L~~~i~~~~~  102 (352)
                      ++  .|+++|++++..+++
T Consensus       151 tG--~GI~eLle~I~~l~~  167 (537)
T 3izy_P          151 TG--ENMMALAEATIALAE  167 (537)
T ss_dssp             SS--CSSHHHHHHHHHHHT
T ss_pred             CC--CCchhHHHHHHHhhh
Confidence            99  999999999987765

>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*

Probab=97.79  E-value=4.2e-05  Score=78.01  Aligned_cols=96  Identities=10%  Similarity=0.076  Sum_probs=64.4

Q ss_pred             HHHHHHhhccCEEEEEEcCCCCCCCcCHHHH-HHHh-CCCCEEEEEEcccCCCcc-----c---hH----HHHHH----H
Q psy15351          6 KDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQ-QSVQ-NIRPMVLVLNKRDLINSK-----H---ES----LIEEK----V   67 (352)
Q Consensus         6 ~~~~~~i~~aD~vl~VvDar~p~~~~~~~l~-~~l~-~~k~~ilVlNK~Dl~~~~-----~---~~----~~~~~----~   67 (352)
                      +.+...+.++|++|+|+|+..+.+..+..+. +.+. .++|+++|+||+|+.+..     .   ..    ...+.    +
T Consensus       192 ~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l~~~~~~iiiVlNK~Dl~~~~~~~~ee~e~l~~~~~~i~~~~~~~l  271 (695)
T 2j69_A          192 ELSLGYVNNCHAILFVMRASQPCTLGERRYLENYIKGRGLTVFFLVNAWDQVRESLIDPDDVEELQASENRLRQVFNANL  271 (695)
T ss_dssp             HHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHTTTSCCCEEEEEECGGGGGGGCSSTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHHHhhCCCEEEEEECcccccccccChhhHHHHHHHHHHHHHHHHHHH
Confidence            4566788999999999999887665443332 3443 478999999999997543     1   11    11111    2


Q ss_pred             Hhh-c-----CCCCcEEEeecC--------------CCCCCCHHHHHHHHHHHhhh
Q psy15351         68 RKE-Q-----SHISEVIFTNCR--------------NPNCKGVQKILPTLQHISDN  103 (352)
Q Consensus        68 ~~~-~-----~~~~~v~~iSa~--------------~~~~~gi~~L~~~i~~~~~~  103 (352)
                      ... +     ....+++++||+              ++  .|+++|.+.+.+.+..
T Consensus       272 ~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~~~~~~~~--~Gi~~L~~~L~~~l~~  325 (695)
T 2j69_A          272 AEYCTVEGQNIYDERVFELSSIQALRRRLKNPQADLDG--TGFPKFMDSLNTFLTR  325 (695)
T ss_dssp             GGGGBSSSCBCGGGTEEECCHHHHHHHHHHCTTCCCTT--SSHHHHHHHHHHHHHH
T ss_pred             HHhhcccccccCCCcEEEEeChHHHHhhccCchhhhhc--cCHHHHHHHHHHHHHH
Confidence            111 1     111258999999              88  9999999998876643

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=97.79  E-value=3.4e-05  Score=73.68  Aligned_cols=65  Identities=17%  Similarity=0.233  Sum_probs=40.1

Q ss_pred             ceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCC--CcEEEEeCCCCCCC
Q psy15351        168 NTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEK--PLIYILDTPGISLP  234 (352)
Q Consensus       168 ~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~--~~~~l~DtPGi~~~  234 (352)
                      .++++++|.+|+|||||+|+|.+..+..  .......|+.++.....+....+  ..+.++|+||+...
T Consensus        42 i~~vaLvG~nGaGKSTLln~L~G~~l~g--~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~  108 (427)
T 2qag_B           42 CFNILCVGETGLGKSTLMDTLFNTKFEG--EPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQ  108 (427)
T ss_dssp             EEEEEEECSTTSSSHHHHHHHHTSCC---------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCccccC--CcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhc
Confidence            3569999999999999999999853211  11222346666654322222211  25899999999764

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=97.78  E-value=3.4e-05  Score=66.30  Aligned_cols=91  Identities=22%  Similarity=0.244  Sum_probs=54.0

Q ss_pred             HHhhccCEEEEEEcCCCCCCCcC---HHHHHHHh------CCCCEEEEEEcccCCCccchHHHHHHHHhh----------
Q psy15351         10 KHLKNVDIVIEVHDSRMPFTGRN---HLLQQSVQ------NIRPMVLVLNKRDLINSKHESLIEEKVRKE----------   70 (352)
Q Consensus        10 ~~i~~aD~vl~VvDar~p~~~~~---~~l~~~l~------~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~----------   70 (352)
                      ..+..+|++|+|+|++++.....   ..+...+.      .+.|+++|+||+|+.+........+.+.+.          
T Consensus        74 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~  153 (214)
T 2fh5_B           74 RFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSA  153 (214)
T ss_dssp             HHGGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC-
T ss_pred             HHHhhCCEEEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHHHHHHHHHHHHhccchh
Confidence            35789999999999976211111   11222221      357999999999998765443333332210          


Q ss_pred             -------------cCC-------------CCcEEEeecCCCC----CCCHHHHHHHHHHH
Q psy15351         71 -------------QSH-------------ISEVIFTNCRNPN----CKGVQKILPTLQHI  100 (352)
Q Consensus        71 -------------~~~-------------~~~v~~iSa~~~~----~~gi~~L~~~i~~~  100 (352)
                                   ...             ...++.+||+++.    +.|+++++++|.+.
T Consensus       154 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~  213 (214)
T 2fh5_B          154 APSTLDSSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKI  213 (214)
T ss_dssp             -----------CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHH
T ss_pred             ccccccCCccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHh
Confidence                         000             1147789998861    36899999888654

>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}

Probab=97.77  E-value=2.1e-05  Score=78.96  Aligned_cols=89  Identities=13%  Similarity=0.066  Sum_probs=56.8

Q ss_pred             hHHHHHHHHhhccCEEEEEEcCCCC-------CCCcCHHHHHHHh-CC-CCEEEEEEcccCCCcc--c----hHHHHHHH
Q psy15351          3 RGLKDIEKHLKNVDIVIEVHDSRMP-------FTGRNHLLQQSVQ-NI-RPMVLVLNKRDLINSK--H----ESLIEEKV   67 (352)
Q Consensus         3 ~~~~~~~~~i~~aD~vl~VvDar~p-------~~~~~~~l~~~l~-~~-k~~ilVlNK~Dl~~~~--~----~~~~~~~~   67 (352)
                      +..+.+...+..+|++|+|+|++.+       ......+...++. .+ +|+++|+||+|+++..  .    .....+++
T Consensus       257 ~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi~~iIVVvNKiDl~~~~~~~~~ei~~~l~~~l  336 (611)
T 3izq_1          257 DFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQQRFEEIKSKLLPYL  336 (611)
T ss_dssp             CHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTTCCEEEEEEECTTTTTTCHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcCCCeEEEEEecccccchhHHHHHHHHHHHHHHH
Confidence            3456677788999999999999864       1122222222232 34 5599999999998732  1    22333344


Q ss_pred             HhhcCC--CCcEEEeecCCCCCCCHHHH
Q psy15351         68 RKEQSH--ISEVIFTNCRNPNCKGVQKI   93 (352)
Q Consensus        68 ~~~~~~--~~~v~~iSa~~~~~~gi~~L   93 (352)
                      .+.+..  ..+++++||+++  .|+.++
T Consensus       337 ~~~g~~~~~~~~i~vSA~tG--~gI~el  362 (611)
T 3izq_1          337 VDIGFFEDNINWVPISGFSG--EGVYKI  362 (611)
T ss_dssp             HHHTCCGGGCEEEECCTTTC--TTTSSC
T ss_pred             HhhcccccCccEEeeecccC--CCcccc
Confidence            444432  125899999999  998754

>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A

Probab=97.76  E-value=4e-05  Score=74.54  Aligned_cols=88  Identities=14%  Similarity=0.062  Sum_probs=51.2

Q ss_pred             HHHHHHHHhhccCEEEEEEcCCCCCC-------CcCHHHHHHHh-CCCC-EEEEEEcccCCCc----cc----hHHHHHH
Q psy15351          4 GLKDIEKHLKNVDIVIEVHDSRMPFT-------GRNHLLQQSVQ-NIRP-MVLVLNKRDLINS----KH----ESLIEEK   66 (352)
Q Consensus         4 ~~~~~~~~i~~aD~vl~VvDar~p~~-------~~~~~l~~~l~-~~k~-~ilVlNK~Dl~~~----~~----~~~~~~~   66 (352)
                      ..+.+...+..+|++|+|+|++++..       ....+...++. .+.| +++|+||+|+.+.    +.    ..+..++
T Consensus       134 f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~~~~~~~~~i~~e~~~~  213 (467)
T 1r5b_A          134 YVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQWSEERYKECVDKLSMF  213 (467)
T ss_dssp             --------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTTSTTCSSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEEEECccCCCccccHHHHHHHHHHHHHH
Confidence            34556677899999999999998631       11122222222 5666 8999999999642    11    1234444


Q ss_pred             HHhh-cCC---CCcEEEeecCCCCCCCHHHH
Q psy15351         67 VRKE-QSH---ISEVIFTNCRNPNCKGVQKI   93 (352)
Q Consensus        67 ~~~~-~~~---~~~v~~iSa~~~~~~gi~~L   93 (352)
                      +++. ++.   ..+++.+||+++  .|+.++
T Consensus       214 l~~~~g~~~~~~~~~i~vSA~~g--~~i~~l  242 (467)
T 1r5b_A          214 LRRVAGYNSKTDVKYMPVSAYTG--QNVKDR  242 (467)
T ss_dssp             HHHHHCCCHHHHEEEEECBTTTT--BTTSSC
T ss_pred             HHHhcCCCccCCceEEecccccc--cccccc
Confidence            5444 432   125899999999  998753

>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...

Probab=97.75  E-value=1.4e-05  Score=81.46  Aligned_cols=68  Identities=18%  Similarity=0.204  Sum_probs=37.3

Q ss_pred             CcceEEEEeCCCCCChHHHHHHHhCCC--CCC-CC---ceecCC------CCCceeEeeeeEEecCCCcEEEEeCCCCCC
Q psy15351        166 VYNTTVMVVGVPNVGKSSIINALRSSH--MKK-GK---AVPVGP------KAGVTRSVMSQVKISEKPLIYILDTPGISL  233 (352)
Q Consensus       166 ~~~~~v~i~G~pnvGKStliN~l~~~~--~~~-~~---~~~~~~------~pg~T~~~~~~~~~~~~~~~~l~DtPGi~~  233 (352)
                      ....+|+++|.+|+|||||+|+|....  +.. ..   ...+.+      ..|.|...........+..+.|+||||...
T Consensus        10 ~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~~~i~liDTPG~~d   89 (691)
T 1dar_A           10 KRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDTPGHVD   89 (691)
T ss_dssp             GGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETTEEEEEECCCSSTT
T ss_pred             ccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECCeEEEEEECcCccc
Confidence            345789999999999999999998310  000 00   001111      456666544332333455799999999865

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=97.75  E-value=6.2e-05  Score=63.82  Aligned_cols=86  Identities=16%  Similarity=0.088  Sum_probs=55.2

Q ss_pred             hhccCEEEEEEcCCCCCCCcC-HHHHH-HHh----CCCCEEEEEEcccCCCccc--hHHHHHHHHhhcCCCCcEEEeecC
Q psy15351         12 LKNVDIVIEVHDSRMPFTGRN-HLLQQ-SVQ----NIRPMVLVLNKRDLINSKH--ESLIEEKVRKEQSHISEVIFTNCR   83 (352)
Q Consensus        12 i~~aD~vl~VvDar~p~~~~~-~~l~~-~l~----~~k~~ilVlNK~Dl~~~~~--~~~~~~~~~~~~~~~~~v~~iSa~   83 (352)
                      ...+|.+++|.|..++.+... ..+.. +..    .+.|+++|.||+|+.....  ..+...+....+.   +++.+||+
T Consensus        78 ~~~~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~~~~~~~~a~~~~~---~~~e~SA~  154 (192)
T 2cjw_A           78 MQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGRAXAVVFDX---KFIETSAA  154 (192)
T ss_dssp             HHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTC---EEEECBTT
T ss_pred             cccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhccccccHHHHHHHHHHhCC---ceEEeccc
Confidence            456899999999876532221 11211 211    3689999999999975322  1222222223344   38899999


Q ss_pred             CCCCCCHHHHHHHHHHHhh
Q psy15351         84 NPNCKGVQKILPTLQHISD  102 (352)
Q Consensus        84 ~~~~~gi~~L~~~i~~~~~  102 (352)
                      ++  .|++++++++.+.+.
T Consensus       155 ~g--~~v~~lf~~l~~~~~  171 (192)
T 2cjw_A          155 VQ--HNVKELFEGIVRQVR  171 (192)
T ss_dssp             TT--BSHHHHHHHHHHHHH
T ss_pred             cC--CCHHHHHHHHHHHHH
Confidence            99  999999999876553

>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*

Probab=97.74  E-value=2.2e-05  Score=75.00  Aligned_cols=43  Identities=19%  Similarity=0.272  Sum_probs=29.5

Q ss_pred             CcceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEe
Q psy15351        166 VYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSV  211 (352)
Q Consensus       166 ~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~  211 (352)
                      ...++|+++|.+|+|||||+|+|++...   ........+|.|.+.
T Consensus         8 ~~~~~I~iiG~~~~GKSTLi~~L~g~~~---~~~~~e~~~giTi~~   50 (410)
T 1kk1_A            8 QAEVNIGMVGHVDHGKTTLTKALTGVWT---DTHSEELRRGITIKI   50 (410)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHTCCC---C--CGGGGSCSSSCC
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhCCcc---ccChhhhcCCcEEEE
Confidence            4568999999999999999999996321   111222346666653

>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*

Probab=97.73  E-value=1.1e-05  Score=77.82  Aligned_cols=67  Identities=21%  Similarity=0.281  Sum_probs=37.0

Q ss_pred             cceEEEEeCCCCCChHHHHHHHhCC--CCCCCC-----------------------ceecCCCCCceeEeeeeEEecCCC
Q psy15351        167 YNTTVMVVGVPNVGKSSIINALRSS--HMKKGK-----------------------AVPVGPKAGVTRSVMSQVKISEKP  221 (352)
Q Consensus       167 ~~~~v~i~G~pnvGKStliN~l~~~--~~~~~~-----------------------~~~~~~~pg~T~~~~~~~~~~~~~  221 (352)
                      +.++|+++|.+|+|||||+|+|+..  .+....                       .......+|+|.+.........+.
T Consensus         5 ~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~~   84 (435)
T 1jny_A            5 PHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKKY   84 (435)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSSC
T ss_pred             CEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCCe
Confidence            4589999999999999999999852  010000                       000112578888765433334456


Q ss_pred             cEEEEeCCCCCC
Q psy15351        222 LIYILDTPGISL  233 (352)
Q Consensus       222 ~~~l~DtPGi~~  233 (352)
                      .+.++||||...
T Consensus        85 ~~~iiDtpG~~~   96 (435)
T 1jny_A           85 FFTIIDAPGHRD   96 (435)
T ss_dssp             EEEECCCSSSTT
T ss_pred             EEEEEECCCcHH
Confidence            799999999754

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=97.69  E-value=2.3e-05  Score=73.44  Aligned_cols=25  Identities=44%  Similarity=0.541  Sum_probs=22.3

Q ss_pred             CcceEEEEeCCCCCChHHHHHHHhC
Q psy15351        166 VYNTTVMVVGVPNVGKSSIINALRS  190 (352)
Q Consensus       166 ~~~~~v~i~G~pnvGKStliN~l~~  190 (352)
                      +....|+++|.||||||||+|.|..
T Consensus        77 ~~~~~I~i~G~~G~GKSTl~~~L~~  101 (355)
T 3p32_A           77 GNAHRVGITGVPGVGKSTAIEALGM  101 (355)
T ss_dssp             CCSEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHH
Confidence            4568999999999999999999963

>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}

Probab=97.69  E-value=1.6e-05  Score=77.82  Aligned_cols=86  Identities=15%  Similarity=0.186  Sum_probs=58.1

Q ss_pred             HhhccCEEEEEEcCCCCCCCcCHHHHHHHh-CCCCEEEEEEcccCCCccchHHHHHHHHhhcC------CCCcEEEeecC
Q psy15351         11 HLKNVDIVIEVHDSRMPFTGRNHLLQQSVQ-NIRPMVLVLNKRDLINSKHESLIEEKVRKEQS------HISEVIFTNCR   83 (352)
Q Consensus        11 ~i~~aD~vl~VvDar~p~~~~~~~l~~~l~-~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~------~~~~v~~iSa~   83 (352)
                      .+..+|++++|+|++++......+....+. .+.|+++++||+|+.+.+. +...+.+.+.+.      ...+++++||+
T Consensus        71 ~~~~aD~aILVVda~~g~~~qT~e~l~~~~~~~vPiIVviNKiDl~~~~~-~~v~~~l~~~~~~~~~~~~~~~~v~vSAk  149 (501)
T 1zo1_I           71 GAQATDIVVLVVAADDGVMPQTIEAIQHAKAAQVPVVVAVNKIDKPEADP-DRVKNELSQYGILPEEWGGESQFVHVSAK  149 (501)
T ss_dssp             SSBSCSSEEEEEETTTBSCTTTHHHHHHHHHTTCCEEEEEECSSSSTTCC-CCTTCCCCCCCCCTTCCSSSCEEEECCTT
T ss_pred             HHhhCCEEEEEeecccCccHHHHHHHHHHHhcCceEEEEEEeccccccCH-HHHHHHHHHhhhhHHHhCCCccEEEEeee
Confidence            467899999999999876555544444443 6889999999999975321 001111111110      01258999999


Q ss_pred             CCCCCCHHHHHHHHHH
Q psy15351         84 NPNCKGVQKILPTLQH   99 (352)
Q Consensus        84 ~~~~~gi~~L~~~i~~   99 (352)
                      ++  .|+++|++++..
T Consensus       150 tG--~gI~eLle~I~~  163 (501)
T 1zo1_I          150 AG--TGIDELLDAILL  163 (501)
T ss_dssp             TC--TTCTTHHHHTTT
T ss_pred             ec--cCcchhhhhhhh
Confidence            99  999999998864

>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}

Probab=97.69  E-value=2e-05  Score=78.92  Aligned_cols=91  Identities=14%  Similarity=0.119  Sum_probs=53.5

Q ss_pred             HHhhccCEEEEEEcCCCCC-------CCcCHHHHHHHh-CCCC-EEEEEEcccCCCc--cchHHH----HHHH-HhhcCC
Q psy15351         10 KHLKNVDIVIEVHDSRMPF-------TGRNHLLQQSVQ-NIRP-MVLVLNKRDLINS--KHESLI----EEKV-RKEQSH   73 (352)
Q Consensus        10 ~~i~~aD~vl~VvDar~p~-------~~~~~~l~~~l~-~~k~-~ilVlNK~Dl~~~--~~~~~~----~~~~-~~~~~~   73 (352)
                      ..+..+|++|+|+|++.+.       .....+...++. .+.| +|+|+||+|+++.  +.....    .+++ +..++.
T Consensus       274 ~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~lgip~iIvviNKiDl~~~~~~~~~~i~~el~~~l~~~~g~~  353 (592)
T 3mca_A          274 AGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRALGISEIVVSVNKLDLMSWSEDRFQEIKNIVSDFLIKMVGFK  353 (592)
T ss_dssp             C-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHSSCCCEEEEEECGGGGTTCHHHHHHHHHHHHHHHTTTSCCC
T ss_pred             HHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEEEeccccccccHHHHHHHHHHHHHHHHHhhCCC
Confidence            3467899999999998753       223333333333 4565 8999999999862  222222    2333 223332


Q ss_pred             C--CcEEEeecCCCCCCCHH--------------HHHHHHHHHhh
Q psy15351         74 I--SEVIFTNCRNPNCKGVQ--------------KILPTLQHISD  102 (352)
Q Consensus        74 ~--~~v~~iSa~~~~~~gi~--------------~L~~~i~~~~~  102 (352)
                      .  .+++++||+++  .|+.              .|++.|.++.+
T Consensus       354 ~~~~~ii~iSA~~G--~gI~e~~~~~~~~w~~g~~Lle~l~~~~p  396 (592)
T 3mca_A          354 TSNVHFVPISAISG--TNLIQKDSSDLYKWYKGPTLLSALDQLVP  396 (592)
T ss_dssp             GGGEEEEEECSSSC--SSSCSCCCCGGGGTCCSCCHHHHHHTSCC
T ss_pred             ccceEEEEEecccC--cccccccccccccccchHHHHHHHHhhcc
Confidence            1  15899999999  9997              78888877655

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=97.69  E-value=0.00016  Score=61.71  Aligned_cols=89  Identities=17%  Similarity=0.212  Sum_probs=61.4

Q ss_pred             hccCEEEEEEcCCCCCCCcCHHHHHHHh-CCCCEEEEEEcccCCCccch----HHHHHHHHhhcCCCCcEEEeecCCCCC
Q psy15351         13 KNVDIVIEVHDSRMPFTGRNHLLQQSVQ-NIRPMVLVLNKRDLINSKHE----SLIEEKVRKEQSHISEVIFTNCRNPNC   87 (352)
Q Consensus        13 ~~aD~vl~VvDar~p~~~~~~~l~~~l~-~~k~~ilVlNK~Dl~~~~~~----~~~~~~~~~~~~~~~~v~~iSa~~~~~   87 (352)
                      ..+|.+++|+|+..+....+..+..++. .+.|.++|.||+|+.+....    ....+.+.+... ...++++||+++  
T Consensus       107 ~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~-~~~~~~~Sal~~--  183 (210)
T 1pui_A          107 QSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNG-DVQVETFSSLKK--  183 (210)
T ss_dssp             TTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCS-CEEEEECBTTTT--
T ss_pred             hcccEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCC-CCceEEEeecCC--
Confidence            5789999999998876544444555554 67899999999999875432    222333322221 124678999999  


Q ss_pred             CCHHHHHHHHHHHhhhc
Q psy15351         88 KGVQKILPTLQHISDNM  104 (352)
Q Consensus        88 ~gi~~L~~~i~~~~~~~  104 (352)
                      .|++++++.|.+..+..
T Consensus       184 ~~~~~l~~~l~~~~~~~  200 (210)
T 1pui_A          184 QGVDKLRQKLDTWFSEM  200 (210)
T ss_dssp             BSHHHHHHHHHHHHC--
T ss_pred             CCHHHHHHHHHHHHhhc
Confidence            99999999998876543

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=97.68  E-value=2.1e-05  Score=70.91  Aligned_cols=24  Identities=42%  Similarity=0.685  Sum_probs=21.8

Q ss_pred             ceEEEEeCCCCCChHHHHHHHhCC
Q psy15351        168 NTTVMVVGVPNVGKSSIINALRSS  191 (352)
Q Consensus       168 ~~~v~i~G~pnvGKStliN~l~~~  191 (352)
                      .++++++|.+|+|||||+|+|++.
T Consensus         2 ~f~v~lvG~nGaGKSTLln~L~g~   25 (270)
T 3sop_A            2 DFNIMVVGQSGLGKSTLVNTLFKS   25 (270)
T ss_dssp             EEEEEEEESSSSSHHHHHHHHHHH
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCC
Confidence            378999999999999999999973

>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A

Probab=97.68  E-value=2.6e-05  Score=75.73  Aligned_cols=88  Identities=9%  Similarity=-0.012  Sum_probs=55.8

Q ss_pred             hHHHHHHHHhhccCEEEEEEcCCCCCCC-------cCHHHHHHHh-CCCC-EEEEEEcccCCC--ccch----HHHHHHH
Q psy15351          3 RGLKDIEKHLKNVDIVIEVHDSRMPFTG-------RNHLLQQSVQ-NIRP-MVLVLNKRDLIN--SKHE----SLIEEKV   67 (352)
Q Consensus         3 ~~~~~~~~~i~~aD~vl~VvDar~p~~~-------~~~~l~~~l~-~~k~-~ilVlNK~Dl~~--~~~~----~~~~~~~   67 (352)
                      +..+.+...+..+|++|+|+|++++...       ...+...++. .+.| +++|+||+|+.+  ++..    +++.+++
T Consensus        97 ~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~~~v~~iivviNK~Dl~~~~~~~~~~i~~~~~~~l  176 (458)
T 1f60_A           97 DFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTLGVRQLIVAVNKMDSVKWDESRFQEIVKETSNFI  176 (458)
T ss_dssp             THHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHTTCCEEEEEEECGGGGTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHHcCCCeEEEEEEccccccCCHHHHHHHHHHHHHHH
Confidence            4456677889999999999999865311       1112222222 4555 899999999984  2221    2333344


Q ss_pred             HhhcCC--CCcEEEeecCCCCCCCHHH
Q psy15351         68 RKEQSH--ISEVIFTNCRNPNCKGVQK   92 (352)
Q Consensus        68 ~~~~~~--~~~v~~iSa~~~~~~gi~~   92 (352)
                      +..++.  ..+++++||+++  .|+.+
T Consensus       177 ~~~g~~~~~~~~i~vSA~~g--~nv~~  201 (458)
T 1f60_A          177 KKVGYNPKTVPFVPISGWNG--DNMIE  201 (458)
T ss_dssp             HHHTCCGGGCCEEECCTTTC--BTTTB
T ss_pred             HHcCCCccCceEEEeecccC--cCccc
Confidence            444432  125999999999  88763

>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=97.66  E-value=4.8e-05  Score=72.69  Aligned_cols=43  Identities=19%  Similarity=0.248  Sum_probs=27.5

Q ss_pred             CcceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEe
Q psy15351        166 VYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSV  211 (352)
Q Consensus       166 ~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~  211 (352)
                      .+.++|+++|.+++|||||+|+|++...   ........+|.|.+.
T Consensus         6 ~~~~~I~iiG~~d~GKSTLi~~L~g~~~---~~~~~e~~~giTi~~   48 (408)
T 1s0u_A            6 QAEVNIGMVGHVDHGKTSLTKALTGVWT---DRHSEELRRGISIRL   48 (408)
T ss_dssp             CCCEEEEEESCTTSSHHHHHHHHHSCCC---CC-------CCCCCC
T ss_pred             CCceEEEEEcCCCCCHHHHHHHHhCCcc---ccCcccccCCcEEEe
Confidence            3568999999999999999999996321   111222346666653

>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*

Probab=97.66  E-value=0.00018  Score=71.04  Aligned_cols=53  Identities=23%  Similarity=0.252  Sum_probs=41.0

Q ss_pred             HHHHHHhhccCEEEEEEcCCCCCCCcCHHHHHHHh-CCCCEEEEEEcccCCCcc
Q psy15351          6 KDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQ-NIRPMVLVLNKRDLINSK   58 (352)
Q Consensus         6 ~~~~~~i~~aD~vl~VvDar~p~~~~~~~l~~~l~-~~k~~ilVlNK~Dl~~~~   58 (352)
                      ..+...+..+|.+|+|+|+..+.......+...+. .+.|+++|+||+|+....
T Consensus        97 ~~~~~~l~~aD~~IlVvDa~~g~~~~t~~~~~~~~~~~ipiivviNK~Dl~~~~  150 (529)
T 2h5e_A           97 EDTYRTLTAVDCCLMVIDAAKGVEDRTRKLMEVTRLRDTPILTFMNKLDRDIRD  150 (529)
T ss_dssp             HHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHTTTTCCEEEEEECTTSCCSC
T ss_pred             HHHHHHHHHCCEEEEEEeCCccchHHHHHHHHHHHHcCCCEEEEEcCcCCcccc
Confidence            45677899999999999999876544444444444 578999999999997643

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=97.64  E-value=1.4e-05  Score=71.28  Aligned_cols=94  Identities=10%  Similarity=0.099  Sum_probs=61.0

Q ss_pred             HHHHHHhhccCEEEEEEcCCCCCCCcCHHHHHHHh-C-----CCCEEEEEE-cccCCCccchHHHH---------HHHHh
Q psy15351          6 KDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQ-N-----IRPMVLVLN-KRDLINSKHESLIE---------EKVRK   69 (352)
Q Consensus         6 ~~~~~~i~~aD~vl~VvDar~p~~~~~~~l~~~l~-~-----~k~~ilVlN-K~Dl~~~~~~~~~~---------~~~~~   69 (352)
                      +.++..+..+|++|+|+|+.. +......+.+++. .     .+|.++|+| |+|+.+.. ...++         +.+..
T Consensus        97 ~~~~~~~~~~d~il~V~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~~~-~~~~i~~~~~~~~~~~~~~  174 (260)
T 2xtp_A           97 RCYLLSAPGPHVLLLVTQLGR-YTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNGGS-LMDYMHDSDNKALSKLVAA  174 (260)
T ss_dssp             HHHHHHTTCCSEEEEEEETTC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCC-HHHHHHHCCCHHHHHHHHH
T ss_pred             HHHHhcCCCCcEEEEEEeCCC-CCHHHHHHHHHHHHHhCchhhccEEEEEEcccccCCcc-HHHHHHhcchHHHHHHHHH
Confidence            334557788999999999985 3333333333332 1     568888888 99998543 22211         12322


Q ss_pred             hcCC---CCcEEEeecCCCCCCCHHHHHHHHHHHhhhc
Q psy15351         70 EQSH---ISEVIFTNCRNPNCKGVQKILPTLQHISDNM  104 (352)
Q Consensus        70 ~~~~---~~~v~~iSa~~~~~~gi~~L~~~i~~~~~~~  104 (352)
                      .+..   +.+ +.+||+++  .|++++++.|.+.++..
T Consensus       175 ~~~~~~~~~~-~~~SA~~~--~gv~~l~~~i~~~~~~~  209 (260)
T 2xtp_A          175 CGGRICAFNN-RAEGSNQD--DQVKELMDCIEDLLMEK  209 (260)
T ss_dssp             TTTCEEECCT-TCCHHHHH--HHHHHHHHHHHHHHHHT
T ss_pred             hCCeEEEecC-cccccccH--HHHHHHHHHHHHHHHhC
Confidence            2221   112 67899999  99999999999888754

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=97.62  E-value=0.00011  Score=68.73  Aligned_cols=88  Identities=11%  Similarity=0.062  Sum_probs=53.3

Q ss_pred             HHhhccCEEEEEEcCCCCCCCcCHHHHHHHhCCCCEEEEEEcccCCCccchHHHHHHHHh----hc----CCCCcEEEee
Q psy15351         10 KHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHESLIEEKVRK----EQ----SHISEVIFTN   81 (352)
Q Consensus        10 ~~i~~aD~vl~VvDar~p~~~~~~~l~~~l~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~----~~----~~~~~v~~iS   81 (352)
                      ...+.+|++++|+|+..+...  ..+...+ ...|.++|+||+|+.+........+.+..    ..    ....+++++|
T Consensus       183 ~l~~~~d~vl~V~d~~~~~~~--~~i~~~i-l~~~~ivVlNK~Dl~~~~~~~~~~~~l~~~l~~~~~~a~~~~~~vi~iS  259 (349)
T 2www_A          183 AVADMVDMFVLLLPPAGGDEL--QGIKRGI-IEMADLVAVTKSDGDLIVPARRIQAEYVSALKLLRKRSQVWKPKVIRIS  259 (349)
T ss_dssp             HHHTTCSEEEEEECCC---------------CCSCSEEEECCCSGGGHHHHHHHHHHHHHHHTTCC-----CCCEEEECC
T ss_pred             hHHhhCCEEEEEEcCCcchhH--HHhHHHH-HhcCCEEEEeeecCCCchhHHHHHHHHHHHHHhcCccccCCCceEEEEe
Confidence            346789999999998765321  1121112 35688999999999754322112222211    11    0012589999


Q ss_pred             cCCCCCCCHHHHHHHHHHHhh
Q psy15351         82 CRNPNCKGVQKILPTLQHISD  102 (352)
Q Consensus        82 a~~~~~~gi~~L~~~i~~~~~  102 (352)
                      |+++  .|+++|+++|.+.++
T Consensus       260 A~~g--~Gi~~L~~~I~~~~~  278 (349)
T 2www_A          260 ARSG--EGISEMWDKMKDFQD  278 (349)
T ss_dssp             TTTC--TTHHHHHHHHHHHHH
T ss_pred             cCCC--CCHHHHHHHHHHHHH
Confidence            9999  999999999987764

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=97.61  E-value=6.9e-05  Score=62.86  Aligned_cols=91  Identities=18%  Similarity=0.183  Sum_probs=57.0

Q ss_pred             HhhccCEEEEEEcCCCCCCCcC---HHHHHHHh--CCCCEEEEEEcccCCCccchH----HHHHHHHh-hcCC-CCcEEE
Q psy15351         11 HLKNVDIVIEVHDSRMPFTGRN---HLLQQSVQ--NIRPMVLVLNKRDLINSKHES----LIEEKVRK-EQSH-ISEVIF   79 (352)
Q Consensus        11 ~i~~aD~vl~VvDar~p~~~~~---~~l~~~l~--~~k~~ilVlNK~Dl~~~~~~~----~~~~~~~~-~~~~-~~~v~~   79 (352)
                      .+..+|++++|+|.+++..+.+   ..+..+..  .+.|+++|.||+|+.+.....    ...+.+.+ .+.. ..+++.
T Consensus        76 ~~~~~~~~i~v~d~~~~~~s~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (184)
T 2zej_A           76 FMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARASSSPVILVGTHLDVSDEKQRKACMSKITKELLNKRGFPAIRDYHF  155 (184)
T ss_dssp             HHHHSEEEEEEEEGGGCHHHHHTHHHHHHHHHHHCTTCEEEEEEECGGGCCHHHHHHHHHHHHHHTTTCTTSCEEEEEEE
T ss_pred             HccCCcEEEEEEeCCcchhHHHHHHHHHHHHHhhCCCCcEEEEEECCCcccchhhHHHHHHHHHHHHHhcCCcchhheEE
Confidence            4677999999999987632221   11222222  378999999999997654322    11122211 1221 013788


Q ss_pred             eecCCCCCC-CHHHHHHHHHHHhhh
Q psy15351         80 TNCRNPNCK-GVQKILPTLQHISDN  103 (352)
Q Consensus        80 iSa~~~~~~-gi~~L~~~i~~~~~~  103 (352)
                      +||+++  . |+++|++.|.+.+..
T Consensus       156 ~Sa~~~--~~~~~~l~~~i~~~~~~  178 (184)
T 2zej_A          156 VNATEE--SDALAKLRKTIINESLN  178 (184)
T ss_dssp             CCTTSC--CHHHHHHHHHHHHHHHC
T ss_pred             EecccC--chhHHHHHHHHHHHHhc
Confidence            999999  7 999999988776654

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=97.60  E-value=6.2e-05  Score=65.04  Aligned_cols=82  Identities=11%  Similarity=0.115  Sum_probs=54.4

Q ss_pred             cCEEEEEEcCCCCCCCcCHHHHHHHh-CCCCEEEEEEcccCCCc--cchHHHHHHHHhhcCCCCcEEEeecCCCCCCCHH
Q psy15351         15 VDIVIEVHDSRMPFTGRNHLLQQSVQ-NIRPMVLVLNKRDLINS--KHESLIEEKVRKEQSHISEVIFTNCRNPNCKGVQ   91 (352)
Q Consensus        15 aD~vl~VvDar~p~~~~~~~l~~~l~-~~k~~ilVlNK~Dl~~~--~~~~~~~~~~~~~~~~~~~v~~iSa~~~~~~gi~   91 (352)
                      ++.+++|+|+..+..    ....+.. .+.|.++|+||+|+.+.  ....+..+.+++.+. ..+++.+||+++  .|++
T Consensus       130 ~~~~i~vvd~~~~~~----~~~~~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~-~~~i~~~Sa~~g--~gi~  202 (221)
T 2wsm_A          130 ENYRVVMVSVTEGDD----VVEKHPEIFRVADLIVINKVALAEAVGADVEKMKADAKLINP-RAKIIEMDLKTG--KGFE  202 (221)
T ss_dssp             CSEEEEEEEGGGCTT----HHHHCHHHHHTCSEEEEECGGGHHHHTCCHHHHHHHHHHHCT-TSEEEECBTTTT--BTHH
T ss_pred             cCcEEEEEeCCCcch----hhhhhhhhhhcCCEEEEecccCCcchhhHHHHHHHHHHHhCC-CCeEEEeecCCC--CCHH
Confidence            456777999876531    1111111 35788999999999754  234455555544331 125899999999  9999


Q ss_pred             HHHHHHHHHhhh
Q psy15351         92 KILPTLQHISDN  103 (352)
Q Consensus        92 ~L~~~i~~~~~~  103 (352)
                      +++++|.+.+..
T Consensus       203 ~l~~~l~~~~~~  214 (221)
T 2wsm_A          203 EWIDFLRGILNV  214 (221)
T ss_dssp             HHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHH
Confidence            999999876643

>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*

Probab=97.59  E-value=3e-05  Score=77.47  Aligned_cols=66  Identities=17%  Similarity=0.249  Sum_probs=33.0

Q ss_pred             ceEEEEeCCCCCChHHHHHHHhCCC--CCCCC-cee------cCCCCCceeEeee-eEEec--CC--CcEEEEeCCCCCC
Q psy15351        168 NTTVMVVGVPNVGKSSIINALRSSH--MKKGK-AVP------VGPKAGVTRSVMS-QVKIS--EK--PLIYILDTPGISL  233 (352)
Q Consensus       168 ~~~v~i~G~pnvGKStliN~l~~~~--~~~~~-~~~------~~~~pg~T~~~~~-~~~~~--~~--~~~~l~DtPGi~~  233 (352)
                      -.+++++|.+|+|||||+++|+...  +.... ...      .....|.|..... .+.+.  ++  ..+.|+||||..+
T Consensus         6 irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh~d   85 (600)
T 2ywe_A            6 VRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHVD   85 (600)
T ss_dssp             EEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCSGG
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCcHh
Confidence            4689999999999999999997420  00000 001      1113566654332 11111  22  2578999999865

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=97.58  E-value=0.00022  Score=72.40  Aligned_cols=52  Identities=13%  Similarity=0.029  Sum_probs=40.0

Q ss_pred             HHHHHHHHhhccCEEEEEEcCCCCCCCcCHHHHHHHh-CCCCEEEEEEcccCC
Q psy15351          4 GLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQ-NIRPMVLVLNKRDLI   55 (352)
Q Consensus         4 ~~~~~~~~i~~aD~vl~VvDar~p~~~~~~~l~~~l~-~~k~~ilVlNK~Dl~   55 (352)
                      ....+...+..+|.+++|+|+..........+...+. .+.|+++|+||+|+.
T Consensus        87 f~~~~~~~l~~ad~~ilVvD~~~g~~~qt~~~~~~~~~~~ip~ilv~NKiD~~  139 (665)
T 2dy1_A           87 FVGEIRGALEAADAALVAVSAEAGVQVGTERAWTVAERLGLPRMVVVTKLDKG  139 (665)
T ss_dssp             GHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEECGGGC
T ss_pred             hHHHHHHHHhhcCcEEEEEcCCcccchhHHHHHHHHHHccCCEEEEecCCchh
Confidence            3456778889999999999998776544444444443 688999999999997

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*

Probab=97.57  E-value=0.00013  Score=66.88  Aligned_cols=87  Identities=13%  Similarity=0.128  Sum_probs=53.5

Q ss_pred             HHHHhhccCEEEEEEcCCCCCCCcCH-HHHHHHh------CCCCEEEEEEcccCCCccch--------HHHHHHHHhhcC
Q psy15351          8 IEKHLKNVDIVIEVHDSRMPFTGRNH-LLQQSVQ------NIRPMVLVLNKRDLINSKHE--------SLIEEKVRKEQS   72 (352)
Q Consensus         8 ~~~~i~~aD~vl~VvDar~p~~~~~~-~l~~~l~------~~k~~ilVlNK~Dl~~~~~~--------~~~~~~~~~~~~   72 (352)
                      ....+..+|++|+|+|+.++.+..+. .+..++.      .+.|+++|+||+|+.+.+..        .+..++.+..|.
T Consensus        74 ~~~~~~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~  153 (307)
T 3r7w_A           74 KDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGF  153 (307)
T ss_dssp             HHHHHTTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             HHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCC
Confidence            34566899999999999886543322 1122221      37899999999999874332        222333333443


Q ss_pred             CCCcEEEeecCCCCCCCHHHHHHHH
Q psy15351         73 HISEVIFTNCRNPNCKGVQKILPTL   97 (352)
Q Consensus        73 ~~~~v~~iSa~~~~~~gi~~L~~~i   97 (352)
                      +..+++.+||++.   |+.+++..+
T Consensus       154 ~~~~~~~tSa~~~---~i~e~~~~i  175 (307)
T 3r7w_A          154 PNLIGFPTSIWDE---SLYKAWSQI  175 (307)
T ss_dssp             CSCEEEECCTTSS---HHHHHHHHH
T ss_pred             CCeEEEEeeecCC---hHHHHHHHH
Confidence            1135899999884   555554444

>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H

Probab=97.57  E-value=0.00016  Score=73.89  Aligned_cols=67  Identities=16%  Similarity=0.139  Sum_probs=41.0

Q ss_pred             cceEEEEeCCCCCChHHHHHHHhCCC--CCCC-C---ceecCC------CCCceeEeeeeEEecCC-------CcEEEEe
Q psy15351        167 YNTTVMVVGVPNVGKSSIINALRSSH--MKKG-K---AVPVGP------KAGVTRSVMSQVKISEK-------PLIYILD  227 (352)
Q Consensus       167 ~~~~v~i~G~pnvGKStliN~l~~~~--~~~~-~---~~~~~~------~pg~T~~~~~~~~~~~~-------~~~~l~D  227 (352)
                      ...+|+++|.+|+|||||+++|....  +... .   ...+.+      ..|.|...........+       ..+.|+|
T Consensus         9 ~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~liD   88 (704)
T 2rdo_7            9 RYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINIID   88 (704)
T ss_pred             cccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEEEe
Confidence            45789999999999999999997421  0000 0   001111      35666654322222222       4689999


Q ss_pred             CCCCCC
Q psy15351        228 TPGISL  233 (352)
Q Consensus       228 tPGi~~  233 (352)
                      |||..+
T Consensus        89 TPG~~d   94 (704)
T 2rdo_7           89 TPGHVD   94 (704)
T ss_pred             CCCccc
Confidence            999865

>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}

Probab=97.55  E-value=0.00033  Score=60.23  Aligned_cols=95  Identities=11%  Similarity=-0.016  Sum_probs=60.3

Q ss_pred             HHHH-HHhhccCEEEEEEcCCCCCC-CcCHHH---HHHHh-----CCCCEEEEEEcc-cCCCccchHHHHHHHHhhcCCC
Q psy15351          6 KDIE-KHLKNVDIVIEVHDSRMPFT-GRNHLL---QQSVQ-----NIRPMVLVLNKR-DLINSKHESLIEEKVRKEQSHI   74 (352)
Q Consensus         6 ~~~~-~~i~~aD~vl~VvDar~p~~-~~~~~l---~~~l~-----~~k~~ilVlNK~-Dl~~~~~~~~~~~~~~~~~~~~   74 (352)
                      |.+| .+.+++|.||||||+.+.-- ..-.++   ...+.     .+.|++|+.||. |+...-...++.+.+.=.....
T Consensus       116 RplWr~Yy~~TdglIfVVDSsD~~R~eak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~Ams~~EI~e~L~L~~l~R  195 (227)
T 3l82_B          116 IPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHELHLNLLNH  195 (227)
T ss_dssp             -CCHHHHHHHCSEEEEEEECBTTCCCCHHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSCBCCHHHHHHHTTGGGGCS
T ss_pred             HHHHHHHhcCCCEEEEEeccccHhHHHHHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccCCCCHHHHHHHcCCcCCCC
Confidence            3444 47799999999999976521 122333   22232     356899999996 6754444455555442111110


Q ss_pred             C-cEEEeecCCCCCCCHHHHHHHHHHHhh
Q psy15351         75 S-EVIFTNCRNPNCKGVQKILPTLQHISD  102 (352)
Q Consensus        75 ~-~v~~iSa~~~~~~gi~~L~~~i~~~~~  102 (352)
                      . .|..+||.+|  +|+.+-++||.+.+.
T Consensus       196 ~W~Iq~csA~TG--eGL~EGLdWL~~~l~  222 (227)
T 3l82_B          196 PWLVQDTEAETL--TGFLNGIEWILEEVE  222 (227)
T ss_dssp             CEEEEEEETTTC--TTHHHHHHHHTTTTT
T ss_pred             CEEEEEeECCCC--cCHHHHHHHHHHHHH
Confidence            0 3778999999  999999999976654

>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*

Probab=97.55  E-value=4.4e-05  Score=76.29  Aligned_cols=66  Identities=15%  Similarity=0.224  Sum_probs=29.6

Q ss_pred             ceEEEEeCCCCCChHHHHHHHhCCC--CCCCC-cee------cCCCCCceeEeeee-EEec--CC--CcEEEEeCCCCCC
Q psy15351        168 NTTVMVVGVPNVGKSSIINALRSSH--MKKGK-AVP------VGPKAGVTRSVMSQ-VKIS--EK--PLIYILDTPGISL  233 (352)
Q Consensus       168 ~~~v~i~G~pnvGKStliN~l~~~~--~~~~~-~~~------~~~~pg~T~~~~~~-~~~~--~~--~~~~l~DtPGi~~  233 (352)
                      -.+|+++|.+++|||||+++|+...  +.... ...      .....|.|...... +.+.  ++  ..+.|+||||..+
T Consensus         4 irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~d   83 (599)
T 3cb4_D            4 IRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHVD   83 (599)
T ss_dssp             EEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCGG
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCchH
Confidence            3579999999999999999997521  00000 001      11245667654331 2121  12  2578999999854

>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A

Probab=97.53  E-value=3.4e-05  Score=75.04  Aligned_cols=68  Identities=22%  Similarity=0.218  Sum_probs=35.1

Q ss_pred             CcceEEEEeCCCCCChHHHHHHHhCCC--CCC-------------CC----ceec------CCCCCceeEeeeeEEecCC
Q psy15351        166 VYNTTVMVVGVPNVGKSSIINALRSSH--MKK-------------GK----AVPV------GPKAGVTRSVMSQVKISEK  220 (352)
Q Consensus       166 ~~~~~v~i~G~pnvGKStliN~l~~~~--~~~-------------~~----~~~~------~~~pg~T~~~~~~~~~~~~  220 (352)
                      ...++|+++|.+|+|||||+|+|+...  +..             ++    .+.+      ....|.|.+.........+
T Consensus        41 k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~~  120 (467)
T 1r5b_A           41 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEH  120 (467)
T ss_dssp             CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSS
T ss_pred             CCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecCC
Confidence            456899999999999999999996310  000             00    0011      1246777776433333345


Q ss_pred             CcEEEEeCCCCCC
Q psy15351        221 PLIYILDTPGISL  233 (352)
Q Consensus       221 ~~~~l~DtPGi~~  233 (352)
                      ..+.++||||...
T Consensus       121 ~~~~iiDtPGh~~  133 (467)
T 1r5b_A          121 RRFSLLDAPGHKG  133 (467)
T ss_dssp             EEEEECCCCC---
T ss_pred             eEEEEEECCCcHH
Confidence            6799999999754

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=97.50  E-value=0.00014  Score=69.47  Aligned_cols=26  Identities=42%  Similarity=0.623  Sum_probs=23.1

Q ss_pred             CcceEEEEeCCCCCChHHHHHHHhCC
Q psy15351        166 VYNTTVMVVGVPNVGKSSIINALRSS  191 (352)
Q Consensus       166 ~~~~~v~i~G~pnvGKStliN~l~~~  191 (352)
                      +-.++|+++|.+|||||||+|+|++.
T Consensus        29 ~vsf~I~lvG~sGaGKSTLln~L~g~   54 (418)
T 2qag_C           29 GFEFTLMVVGESGLGKSTLINSLFLT   54 (418)
T ss_dssp             CCCEEEEEECCTTSSHHHHHHHHTTC
T ss_pred             CCCEEEEEECCCCCcHHHHHHHHhCC
Confidence            34578999999999999999999974

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=97.50  E-value=0.00011  Score=68.38  Aligned_cols=87  Identities=13%  Similarity=0.113  Sum_probs=54.3

Q ss_pred             HhhccCEEEEEEcCCCCCCCcCHHHHHHHhCCCCEEEEEEcccCCCccchHHHHHHHHh----hcC--C--CCcEEEeec
Q psy15351         11 HLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHESLIEEKVRK----EQS--H--ISEVIFTNC   82 (352)
Q Consensus        11 ~i~~aD~vl~VvDar~p~~~~~~~l~~~l~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~----~~~--~--~~~v~~iSa   82 (352)
                      ....+|++++|+|+..+....  .+.... .+.|.++|+||+|+.+......+.+.+++    ...  .  ..+++++||
T Consensus       166 ~~~~aD~vl~Vvd~~~~~~~~--~l~~~~-~~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA  242 (341)
T 2p67_A          166 VARMVDCFISLQIAGGGDDLQ--GIKKGL-MEVADLIVINKDDGDNHTNVAIARHMYESALHILRRKYDEWQPRVLTCSA  242 (341)
T ss_dssp             HHTTCSEEEEEECC------C--CCCHHH-HHHCSEEEECCCCTTCHHHHHHHHHHHHHHHHHSCCSBTTBCCEEEECBG
T ss_pred             HHHhCCEEEEEEeCCccHHHH--HHHHhh-hcccCEEEEECCCCCChHHHHHHHHHHHHHHHhccccccCCCCcEEEeeC
Confidence            468999999999986542111  011111 24678999999999875433333333322    111  0  125889999


Q ss_pred             CCCCCCCHHHHHHHHHHHhh
Q psy15351         83 RNPNCKGVQKILPTLQHISD  102 (352)
Q Consensus        83 ~~~~~~gi~~L~~~i~~~~~  102 (352)
                      +++  .|+++|+++|.+.+.
T Consensus       243 ~~g--~gi~~L~~~l~~~~~  260 (341)
T 2p67_A          243 LEK--RGIDEIWHAIIDFKT  260 (341)
T ss_dssp             GGT--BSHHHHHHHHHHHHH
T ss_pred             CCC--CCHHHHHHHHHHHHH
Confidence            999  999999999987654

>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}

Probab=97.48  E-value=0.00043  Score=70.56  Aligned_cols=53  Identities=17%  Similarity=0.277  Sum_probs=40.5

Q ss_pred             HHHHHHhhccCEEEEEEcCCCCCCCcCHHHHHHHh-CCCCEEEEEEcccCCCcc
Q psy15351          6 KDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQ-NIRPMVLVLNKRDLINSK   58 (352)
Q Consensus         6 ~~~~~~i~~aD~vl~VvDar~p~~~~~~~l~~~l~-~~k~~ilVlNK~Dl~~~~   58 (352)
                      ..+...+..+|.+|+|+|+..+.......+...+. .+.|+++|+||+|+...+
T Consensus        90 ~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~~~~~~~p~ilviNK~Dl~~~~  143 (693)
T 2xex_A           90 VEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQATTYGVPRIVFVNKMDKLGAN  143 (693)
T ss_dssp             HHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHHHTTCCEEEEEECTTSTTCC
T ss_pred             HHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHHHHHcCCCEEEEEECCCccccc
Confidence            34667788999999999999876655444444443 689999999999998653

>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...

Probab=97.48  E-value=0.00029  Score=71.74  Aligned_cols=54  Identities=19%  Similarity=0.226  Sum_probs=40.7

Q ss_pred             HHHHHHHhhccCEEEEEEcCCCCCCCcCHHHHHHHh-CCCCEEEEEEcccCCCcc
Q psy15351          5 LKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQ-NIRPMVLVLNKRDLINSK   58 (352)
Q Consensus         5 ~~~~~~~i~~aD~vl~VvDar~p~~~~~~~l~~~l~-~~k~~ilVlNK~Dl~~~~   58 (352)
                      ...+...+..+|.+|+|+|+..+.......+...+. .+.|+++|+||+|+...+
T Consensus        91 ~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~~  145 (691)
T 1dar_A           91 TIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRIAFANKMDKTGAD  145 (691)
T ss_dssp             HHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEECTTSTTCC
T ss_pred             HHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHHHHHcCCCEEEEEECCCcccCC
Confidence            345677889999999999999876554444433333 688999999999997643

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=97.45  E-value=0.00019  Score=68.41  Aligned_cols=66  Identities=32%  Similarity=0.335  Sum_probs=38.0

Q ss_pred             cceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCCcEEEEeCCCCCCC
Q psy15351        167 YNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLP  234 (352)
Q Consensus       167 ~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~~~  234 (352)
                      ....++++|.+|+|||||+|+|.+..--......++. +.+|+... .+.....+++.++|+||+...
T Consensus        68 ~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g-~~~t~~~~-v~q~~~~~~ltv~D~~g~~~~  133 (413)
T 1tq4_A           68 SVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGV-VEVTMERH-PYKHPNIPNVVFWDLPGIGST  133 (413)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC-----CCCE-EEECSSCTTEEEEECCCGGGS
T ss_pred             CCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECC-eecceeEE-eccccccCCeeehHhhcccch
Confidence            4568999999999999999999983211111111222 12233211 111112246899999999754

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=97.44  E-value=9.2e-05  Score=67.73  Aligned_cols=26  Identities=42%  Similarity=0.623  Sum_probs=21.7

Q ss_pred             CcceEEEEeCCCCCChHHHHHHHhCC
Q psy15351        166 VYNTTVMVVGVPNVGKSSIINALRSS  191 (352)
Q Consensus       166 ~~~~~v~i~G~pnvGKStliN~l~~~  191 (352)
                      +-.++|+++|.+|||||||+|+|.+.
T Consensus        16 ~~~~~I~lvG~nG~GKSTLl~~L~g~   41 (301)
T 2qnr_A           16 GFEFTLMVVGESGLGKSTLINSLFLT   41 (301)
T ss_dssp             --CEEEEEEEETTSSHHHHHHHHHC-
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHhCC
Confidence            34588999999999999999999863

>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B

Probab=97.42  E-value=9.1e-05  Score=78.45  Aligned_cols=67  Identities=18%  Similarity=0.194  Sum_probs=38.1

Q ss_pred             CcceEEEEeCCCCCChHHHHHHHhCCCC--CCCC--------ceecCCCCCceeEeeeeEEecCCCcEEEEeCCCCC
Q psy15351        166 VYNTTVMVVGVPNVGKSSIINALRSSHM--KKGK--------AVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGIS  232 (352)
Q Consensus       166 ~~~~~v~i~G~pnvGKStliN~l~~~~~--~~~~--------~~~~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~  232 (352)
                      .+.++|+++|.+|+|||||+|+|++...  ....        .......+|+|.+.........+..+.++||||..
T Consensus       294 k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHe  370 (1289)
T 3avx_A          294 KPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHA  370 (1289)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHH
T ss_pred             CCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChH
Confidence            4568999999999999999999985200  0000        00122356777765432222344679999999964

>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*

Probab=97.42  E-value=0.00047  Score=68.26  Aligned_cols=54  Identities=20%  Similarity=0.219  Sum_probs=43.3

Q ss_pred             HHHHHHHhhccCEEEEEEcCCCCCCCcCHHHHHHHh-CCCCEEEEEEcccCCCcc
Q psy15351          5 LKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQ-NIRPMVLVLNKRDLINSK   58 (352)
Q Consensus         5 ~~~~~~~i~~aD~vl~VvDar~p~~~~~~~l~~~l~-~~k~~ilVlNK~Dl~~~~   58 (352)
                      ..++.+.+.-+|.+|+|+||..+....-..+.+.+. .+.|.++++||+|....+
T Consensus       114 ~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~a~~~~lp~i~fINK~Dr~~ad  168 (548)
T 3vqt_A          114 SEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVCRMRATPVMTFVNKMDREALH  168 (548)
T ss_dssp             SHHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHHHHHTTCCEEEEEECTTSCCCC
T ss_pred             HHHHHHHHHhcCceEEEeecCCCcccccHHHHHHHHHhCCceEEEEecccchhcc
Confidence            356788999999999999999887766555555444 789999999999986543

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=97.38  E-value=0.00031  Score=61.58  Aligned_cols=90  Identities=11%  Similarity=0.105  Sum_probs=51.8

Q ss_pred             HHhhccCEEEEEEcCCCCCCCcCHHHH-HHHh-----CCCCEEEEEEcccCCCccchH--------HHHHHHHhhcCCCC
Q psy15351         10 KHLKNVDIVIEVHDSRMPFTGRNHLLQ-QSVQ-----NIRPMVLVLNKRDLINSKHES--------LIEEKVRKEQSHIS   75 (352)
Q Consensus        10 ~~i~~aD~vl~VvDar~p~~~~~~~l~-~~l~-----~~k~~ilVlNK~Dl~~~~~~~--------~~~~~~~~~~~~~~   75 (352)
                      .....+|++|+|+|+.. +...+.... .+..     ..+|+++|+||+|+.+.....        ...+..++.+..  
T Consensus       108 ~~~~~~~~~l~v~d~~~-~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~~~~~~--  184 (239)
T 3lxx_A          108 LTSPGPHALLLVVPLGR-YTEEEHKATEKILKMFGERARSFMILIFTRKDDLGDTNLHDYLREAPEDIQDLMDIFGDR--  184 (239)
T ss_dssp             HTTTCCSEEEEEEETTC-CSSHHHHHHHHHHHHHHHHHGGGEEEEEECGGGC------------CHHHHHHHHHHSSS--
T ss_pred             hcCCCCcEEEEEeeCCC-CCHHHHHHHHHHHHHhhhhccceEEEEEeCCccCCcccHHHHHHhchHHHHHHHHHcCCE--
Confidence            34456799999999874 333332222 2221     246999999999998764433        223333344544  


Q ss_pred             cEEEeecCCC---CCCCHHHHHHHHHHHhhh
Q psy15351         76 EVIFTNCRNP---NCKGVQKILPTLQHISDN  103 (352)
Q Consensus        76 ~v~~iSa~~~---~~~gi~~L~~~i~~~~~~  103 (352)
                       ++++++..+   ...++.+|+..+.+++.+
T Consensus       185 -~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~  214 (239)
T 3lxx_A          185 -YCALNNKATGAEQEAQRAQLLGLIQRVVRE  214 (239)
T ss_dssp             -EEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -EEEEECCCCccccHHHHHHHHHHHHHHHHH
Confidence             667766532   015788888888777654

>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2

Probab=97.36  E-value=9.4e-06  Score=77.28  Aligned_cols=57  Identities=19%  Similarity=0.162  Sum_probs=36.7

Q ss_pred             CCCEEEEEEcccCCCccchHHHHHHHHhhcCCCCcEEEeecCCCCCCCHHHHHH-HHHHHhhh
Q psy15351         42 IRPMVLVLNKRDLINSKHESLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILP-TLQHISDN  103 (352)
Q Consensus        42 ~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~v~~iSa~~~~~~gi~~L~~-~i~~~~~~  103 (352)
                      .+|+++|+||+|+...+....+.+.+...+.   +++++||+.+  .|+.+|++ .+.++++.
T Consensus       214 ~kP~i~v~NK~D~~~~~~l~~l~~~~~~~~~---~vv~iSA~~e--~~l~~L~~~~l~~~~p~  271 (397)
T 1wxq_A          214 NKPMVIAANKADAASDEQIKRLVREEEKRGY---IVIPTSAAAE--LTLRKAAKAGFIEYIPG  271 (397)
T ss_dssp             HSCEEEEEECGGGSCHHHHHHHHHHHHHTTC---EEEEECHHHH--HHHHSCSSSCCCCSCC-
T ss_pred             CCCEEEEEeCccccchHHHHHHHHHHhhcCC---cEEEEeccch--hhHHHHHhhhhhhhcCC
Confidence            5999999999998743223344444433233   4999999998  77776654 44444443

>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H

Probab=97.33  E-value=0.00099  Score=67.95  Aligned_cols=53  Identities=13%  Similarity=0.157  Sum_probs=39.7

Q ss_pred             HHHHHHHhhccCEEEEEEcCCCCCCCcCHHHHHHHh-CCCCEEEEEEcccCCCc
Q psy15351          5 LKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQ-NIRPMVLVLNKRDLINS   57 (352)
Q Consensus         5 ~~~~~~~i~~aD~vl~VvDar~p~~~~~~~l~~~l~-~~k~~ilVlNK~Dl~~~   57 (352)
                      ...+...+..+|.+|+|+|+..+.......+...+. .+.|+++|+||+|+...
T Consensus        96 ~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~ip~ilviNKiD~~~~  149 (704)
T 2rdo_7           96 TIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQANKYKVPRIAFVNKMDRMGA  149 (704)
T ss_pred             HHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEeCCCcccc
Confidence            345677889999999999999876544444333333 67899999999998754

>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}

Probab=97.32  E-value=0.0003  Score=71.04  Aligned_cols=54  Identities=17%  Similarity=0.193  Sum_probs=43.9

Q ss_pred             HHHHHHHHhhccCEEEEEEcCCCCCCCcCHHHHHHHh-CCCCEEEEEEcccCCCc
Q psy15351          4 GLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQ-NIRPMVLVLNKRDLINS   57 (352)
Q Consensus         4 ~~~~~~~~i~~aD~vl~VvDar~p~~~~~~~l~~~l~-~~k~~ilVlNK~Dl~~~   57 (352)
                      +..++.+.+.-+|.+|+|+||..+....-..+.+.+. .+.|.++++||+|....
T Consensus        80 F~~Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~~a~~~~lp~i~~INKmDr~~a  134 (638)
T 3j25_A           80 FLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGIPTIFFINKIDQNGI  134 (638)
T ss_dssp             THHHHHHHHTTCSEEECCEESSCTTCSHHHHHHHHHHHHTCSCEECCEECCSSSC
T ss_pred             HHHHHHHHHHHhCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEeccccccC
Confidence            4567888999999999999999988776666655544 67889999999997654

>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*

Probab=97.30  E-value=0.00015  Score=72.55  Aligned_cols=24  Identities=25%  Similarity=0.508  Sum_probs=22.0

Q ss_pred             cceEEEEeCCCCCChHHHHHHHhC
Q psy15351        167 YNTTVMVVGVPNVGKSSIINALRS  190 (352)
Q Consensus       167 ~~~~v~i~G~pnvGKStliN~l~~  190 (352)
                      +.++|+++|.+|+|||||+|+|++
T Consensus         4 r~~~V~IvGh~d~GKTTLl~~L~~   27 (594)
T 1g7s_A            4 RSPIVSVLGHVDHGKTTLLDHIRG   27 (594)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCcHHHHHHHHhc
Confidence            457899999999999999999986

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=97.26  E-value=5.7e-05  Score=65.25  Aligned_cols=42  Identities=14%  Similarity=0.030  Sum_probs=28.9

Q ss_pred             cceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCce
Q psy15351        167 YNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVT  208 (352)
Q Consensus       167 ~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T  208 (352)
                      ....++++|.+|||||||+|.|.+......+.+.+...|++|
T Consensus        29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~   70 (221)
T 2wsm_A           29 GTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSK   70 (221)
T ss_dssp             TCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCH
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCc
Confidence            457899999999999999999986311112344455555543

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=97.25  E-value=0.00085  Score=56.82  Aligned_cols=88  Identities=16%  Similarity=0.061  Sum_probs=58.7

Q ss_pred             HHhhccCEEEEEEcCCCCCCCcCH-HHHHHHh----CCCCEEEEEEcccCCCccc--hHHHHHHHHhhcCCCCcEEEeec
Q psy15351         10 KHLKNVDIVIEVHDSRMPFTGRNH-LLQQSVQ----NIRPMVLVLNKRDLINSKH--ESLIEEKVRKEQSHISEVIFTNC   82 (352)
Q Consensus        10 ~~i~~aD~vl~VvDar~p~~~~~~-~l~~~l~----~~k~~ilVlNK~Dl~~~~~--~~~~~~~~~~~~~~~~~v~~iSa   82 (352)
                      .....+|.+++|+|+.++.+..+. .+...+.    ...|+++|+||+|+.....  .........+.++.   ++.+||
T Consensus        73 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~---~~d~Sa  149 (199)
T 2f9l_A           73 AYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLS---FIETSA  149 (199)
T ss_dssp             HHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCE---EEECCT
T ss_pred             HHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCe---EEEEeC
Confidence            345688999999999865432221 1111121    3678999999999975322  23333444444544   778999


Q ss_pred             CCCCCCCHHHHHHHHHHHhh
Q psy15351         83 RNPNCKGVQKILPTLQHISD  102 (352)
Q Consensus        83 ~~~~~~gi~~L~~~i~~~~~  102 (352)
                      +++  .|++++++.+.+.+.
T Consensus       150 l~~--~~i~~l~~~l~~~~~  167 (199)
T 2f9l_A          150 LDS--TNVEEAFKNILTEIY  167 (199)
T ss_dssp             TTC--TTHHHHHHHHHHHHH
T ss_pred             CCC--CCHHHHHHHHHHHHH
Confidence            999  999999999887654

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=97.21  E-value=0.00019  Score=62.08  Aligned_cols=25  Identities=20%  Similarity=0.218  Sum_probs=22.4

Q ss_pred             cceEEEEeCCCCCChHHHHHHHhCC
Q psy15351        167 YNTTVMVVGVPNVGKSSIINALRSS  191 (352)
Q Consensus       167 ~~~~v~i~G~pnvGKStliN~l~~~  191 (352)
                      ...+|+++|.+|||||||+|.+...
T Consensus        37 ~~~~i~ivG~~gvGKTtl~~~l~~~   61 (226)
T 2hf9_A           37 GVVAFDFMGAIGSGKTLLIEKLIDN   61 (226)
T ss_dssp             TCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence            4688999999999999999999863

>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A

Probab=97.16  E-value=0.0001  Score=68.97  Aligned_cols=86  Identities=13%  Similarity=0.218  Sum_probs=55.1

Q ss_pred             HHh-hccCEEEEEEcCCCCCCCcCH-HHHHHHh-CCCCEEEEEEcccCCCccchHHHHHHHHhhc----CCCCcEEEeec
Q psy15351         10 KHL-KNVDIVIEVHDSRMPFTGRNH-LLQQSVQ-NIRPMVLVLNKRDLINSKHESLIEEKVRKEQ----SHISEVIFTNC   82 (352)
Q Consensus        10 ~~i-~~aD~vl~VvDar~p~~~~~~-~l~~~l~-~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~----~~~~~v~~iSa   82 (352)
                      ..+ ..+++|++|+|+..++...+. .+.+.+. .+.|+++|+||+|+.++...  +.+.+....    ..+.+++.+||
T Consensus       162 ~~~~~~~~iiL~v~~a~~~~~~~~~~~i~~~~~~~~~~~i~V~NK~Dl~~~~~~--~~~~~~~~~~~l~~~~~~v~~~SA  239 (353)
T 2x2e_A          162 QFVTKENCLILAVSPANSDLANSDALKVAKEVDPQGQRTIGVITKLDLMDEGTD--ARDVLENKLLPLRRGYIGVVNRSQ  239 (353)
T ss_dssp             HHHTSTTEEEEEEEETTSCGGGCHHHHHHHHHCTTCTTEEEEEECGGGSCTTCC--CHHHHTTCSSCCTTCEEECCCCCH
T ss_pred             HHHcCCCeEEEEEecCCCccchhHHHHHHHHhCcCCCceEEEeccccccCcchh--HHHHHhCCcccccCCceEEEeCCc
Confidence            444 445678888898766554433 2444443 57899999999999875431  112222211    11224778999


Q ss_pred             CCCCCCCHHHHHHHHHH
Q psy15351         83 RNPNCKGVQKILPTLQH   99 (352)
Q Consensus        83 ~~~~~~gi~~L~~~i~~   99 (352)
                      +++  .|++++++++.+
T Consensus       240 ~~~--~~i~~l~~~l~~  254 (353)
T 2x2e_A          240 KDI--DGKKDITAALAA  254 (353)
T ss_dssp             HHH--HTTCCHHHHHHH
T ss_pred             ccc--cccccHHHHHHH
Confidence            999  999999988865

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=97.13  E-value=0.00041  Score=65.05  Aligned_cols=70  Identities=10%  Similarity=0.118  Sum_probs=39.0

Q ss_pred             cCEEEEEEcC-CCCCCCcCHHHHHHHhCCCCEEEEEEcccCCCccchHHH----HHHHHhhcCCCCcEEEeecCCCCCCC
Q psy15351         15 VDIVIEVHDS-RMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHESLI----EEKVRKEQSHISEVIFTNCRNPNCKG   89 (352)
Q Consensus        15 aD~vl~VvDa-r~p~~~~~~~l~~~l~~~k~~ilVlNK~Dl~~~~~~~~~----~~~~~~~~~~~~~v~~iSa~~~~~~g   89 (352)
                      +|++++++|. +.++...+..+.+.+..+.|+|+|+||+|+.....+...    .+.+...+++   ++.+||+++  .+
T Consensus       146 v~~~vy~I~~~~~~l~~~d~~~~~~l~~~~piIlV~NK~Dl~~~~ev~~~k~~i~~~~~~~~i~---~~~~Sa~~~--~~  220 (361)
T 2qag_A          146 VHCCFYFISPFGHGLKPLDVAFMKAIHNKVNIVPVIAKADTLTLKERERLKKRILDEIEEHNIK---IYHLPDAES--DE  220 (361)
T ss_dssp             CCEEEEEECSSSSSCCHHHHHHHHHTCS-SCEEEEEECCSSSCHHHHHHHHHHHHHHTTCC-CC---SCCCC--------
T ss_pred             eEEEEEEEecCCCCcchhHHHHHHHhccCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCC---EEeCCCcCC--Cc
Confidence            3578888875 555544443444444357899999999999876544332    2223233444   888999988  66

>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*

Probab=97.08  E-value=0.001  Score=65.78  Aligned_cols=132  Identities=12%  Similarity=0.089  Sum_probs=63.8

Q ss_pred             ceEEEEeCCCCCChHHHHHHHhCCC--CC------CC--------CceecCCCCCceeEeeeeEEecCCCcEEEEeCCCC
Q psy15351        168 NTTVMVVGVPNVGKSSIINALRSSH--MK------KG--------KAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGI  231 (352)
Q Consensus       168 ~~~v~i~G~pnvGKStliN~l~~~~--~~------~~--------~~~~~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi  231 (352)
                      --+|+|+|....|||||..+|+-..  +.      .+        .........|.|.........+.+..+.|+||||-
T Consensus        31 ~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH  110 (548)
T 3vqt_A           31 RRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDTPGH  110 (548)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEEECCCCG
T ss_pred             cceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEEEEeCCCc
Confidence            4579999999999999999986210  00      00        00111223455554433333445668999999999


Q ss_pred             CCCCCCCHHHHHHHHHHh---hhhhhccchhhhhHhHHhhhcCCCCCcccccccCCCCCccHHHHHHHHHHHhc
Q psy15351        232 SLPRIDNLECGMRLAACA---TLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIKKK  302 (352)
Q Consensus       232 ~~~~~~~~~~~~~l~~~~---~i~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~a~~~g  302 (352)
                      .+... +.+..++  ++.   .+.+..-+.+.--..++....+.....+.-.-+++.+..+..+.+.++..+++
T Consensus       111 vDF~~-Ev~raL~--~~DgAvlVvda~~GV~~qT~~v~~~a~~~~lp~i~fINK~Dr~~ad~~~~~~~i~~~l~  181 (548)
T 3vqt_A          111 QDFSE-DTYRVLT--AVDSALVVIDAAKGVEAQTRKLMDVCRMRATPVMTFVNKMDREALHPLDVMADIEQHLQ  181 (548)
T ss_dssp             GGCSH-HHHHHHH--SCSEEEEEEETTTBSCHHHHHHHHHHHHTTCCEEEEEECTTSCCCCHHHHHHHHHHHHT
T ss_pred             HHHHH-HHHHHHH--hcCceEEEeecCCCcccccHHHHHHHHHhCCceEEEEecccchhcchhHhhhhhhhhcC
Confidence            87521 2222221  111   11122222222222233333332222222222334455678888888887776

>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*

Probab=97.08  E-value=0.00024  Score=74.03  Aligned_cols=24  Identities=21%  Similarity=0.300  Sum_probs=21.7

Q ss_pred             cceEEEEeCCCCCChHHHHHHHhC
Q psy15351        167 YNTTVMVVGVPNVGKSSIINALRS  190 (352)
Q Consensus       167 ~~~~v~i~G~pnvGKStliN~l~~  190 (352)
                      ...+|+++|.+|+|||||+|+|..
T Consensus        18 ~~rnI~IiG~~~~GKTTL~~~Ll~   41 (842)
T 1n0u_A           18 NVRNMSVIAHVDHGKSTLTDSLVQ   41 (842)
T ss_dssp             GEEEEEEECCGGGTHHHHHHHHHH
T ss_pred             cccEEEEECCCCCCHHHHHHHHHH
Confidence            346899999999999999999985

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=97.07  E-value=0.0025  Score=57.47  Aligned_cols=95  Identities=11%  Similarity=-0.014  Sum_probs=61.2

Q ss_pred             HHHH-HHhhccCEEEEEEcCCCCCCC-cCHHHH---HHHh-----CCCCEEEEEEcc-cCCCccchHHHHHHHHhhcCCC
Q psy15351          6 KDIE-KHLKNVDIVIEVHDSRMPFTG-RNHLLQ---QSVQ-----NIRPMVLVLNKR-DLINSKHESLIEEKVRKEQSHI   74 (352)
Q Consensus         6 ~~~~-~~i~~aD~vl~VvDar~p~~~-~~~~l~---~~l~-----~~k~~ilVlNK~-Dl~~~~~~~~~~~~~~~~~~~~   74 (352)
                      |..| ...+++|.+|+|||+.+..-. .-.++.   ..+.     .+.|++|+.||. |+...-...++.+.+.=.....
T Consensus       201 RplWr~Yy~~tdglIfVVDSsDreRleak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~Ams~~EI~e~L~L~~l~r  280 (312)
T 3l2o_B          201 IPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHELHLNLLNH  280 (312)
T ss_dssp             CHHHHHHHHHCSEEEECCBCBTTCCCCHHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCBCCHHHHHHHTTGGGGCS
T ss_pred             HHHHHHHhcCCCEEEEEecCCcHhHHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCCCCHHHHHHHcCCccCCC
Confidence            3444 477999999999999765321 112222   2221     467999999974 8865444455555442111111


Q ss_pred             C-cEEEeecCCCCCCCHHHHHHHHHHHhh
Q psy15351         75 S-EVIFTNCRNPNCKGVQKILPTLQHISD  102 (352)
Q Consensus        75 ~-~v~~iSa~~~~~~gi~~L~~~i~~~~~  102 (352)
                      . .|..+||.+|  +|+.+-++|+.+.+.
T Consensus       281 ~W~Iq~csA~tG--eGL~EGldWL~~~l~  307 (312)
T 3l2o_B          281 PWLVQDTEAETL--TGFLNGIEWILEEVE  307 (312)
T ss_dssp             CEEEEEEETTTC--TTHHHHHHHHHHHSC
T ss_pred             cEEEEecccCCC--cCHHHHHHHHHHHHH
Confidence            1 3778999999  999999999987664

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=97.06  E-value=0.00034  Score=68.34  Aligned_cols=24  Identities=25%  Similarity=0.408  Sum_probs=20.6

Q ss_pred             CcceEEEEeCCCCCChHHHHHHHh
Q psy15351        166 VYNTTVMVVGVPNVGKSSIINALR  189 (352)
Q Consensus       166 ~~~~~v~i~G~pnvGKStliN~l~  189 (352)
                      .++..|+++|.|||||||++|.|.
T Consensus        99 ~~~~vI~ivG~~GvGKTTl~~kLA  122 (504)
T 2j37_W           99 GKQNVIMFVGLQGSGKTTTCSKLA  122 (504)
T ss_dssp             S--EEEEEECSTTSSHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHH
Confidence            346789999999999999999998

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=97.06  E-value=0.00093  Score=57.68  Aligned_cols=58  Identities=19%  Similarity=0.315  Sum_probs=41.6

Q ss_pred             CCCEEEEEEcccCCCcc--chHHHHHHHHhhcCCCCcEEEeecCCCCCCCHHHHHHHHHHHhh
Q psy15351         42 IRPMVLVLNKRDLINSK--HESLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISD  102 (352)
Q Consensus        42 ~k~~ilVlNK~Dl~~~~--~~~~~~~~~~~~~~~~~~v~~iSa~~~~~~gi~~L~~~i~~~~~  102 (352)
                      ++|.++|+||+|+.+..  ...+..+++++.+. ..+++.+||+++  .|++++++++.+.+.
T Consensus       164 ~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~g--~gv~~l~~~l~~~~~  223 (226)
T 2hf9_A          164 KTADLIVINKIDLADAVGADIKKMENDAKRINP-DAEVVLLSLKTM--EGFDKVLEFIEKSVK  223 (226)
T ss_dssp             TTCSEEEEECGGGHHHHTCCHHHHHHHHHHHCT-TSEEEECCTTTC--TTHHHHHHHHHHHHH
T ss_pred             hcCCEEEEeccccCchhHHHHHHHHHHHHHhCC-CCeEEEEEecCC--CCHHHHHHHHHHHHH
Confidence            57889999999997542  23444455544321 125899999999  999999999876654

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}

Probab=97.03  E-value=0.00032  Score=62.34  Aligned_cols=26  Identities=27%  Similarity=0.351  Sum_probs=23.7

Q ss_pred             cCcceEEEEeCCC---------CCChHHHHHHHhC
Q psy15351        165 EVYNTTVMVVGVP---------NVGKSSIINALRS  190 (352)
Q Consensus       165 ~~~~~~v~i~G~p---------nvGKStliN~l~~  190 (352)
                      ....++|+++|.|         |||||||+|++.+
T Consensus        16 ~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~   50 (255)
T 3c5h_A           16 FQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVR   50 (255)
T ss_dssp             CCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHC
T ss_pred             CCceeEEEEECCCccccccCCCCcCHHHHHHHHHh
Confidence            3567999999999         9999999999996

>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...

Probab=97.00  E-value=0.00024  Score=66.42  Aligned_cols=90  Identities=17%  Similarity=0.139  Sum_probs=56.4

Q ss_pred             HhhccCEEEEEEcCCCCCC--------CcCHH----HHHHHh----CCCCEEEEEEcccCCCc-----------------
Q psy15351         11 HLKNVDIVIEVHDSRMPFT--------GRNHL----LQQSVQ----NIRPMVLVLNKRDLINS-----------------   57 (352)
Q Consensus        11 ~i~~aD~vl~VvDar~p~~--------~~~~~----l~~~l~----~~k~~ilVlNK~Dl~~~-----------------   57 (352)
                      ..++++.+|+|+|..+...        .+-.+    +..++.    .+.|+++|+||+||...                 
T Consensus       213 yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~~~piiLv~NK~DL~~~ki~~~~l~~~fp~~~g~  292 (353)
T 1cip_A          213 CFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGS  292 (353)
T ss_dssp             GCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHHTTSCGGGTCTTCCSC
T ss_pred             HHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccccCCcEEEEEECcCchhhhccccchhhcccccCCC
Confidence            5688999999999886421        11111    222222    36799999999998521                 


Q ss_pred             cchHHHHHHHHh----hc----CCCCcEEEeecCCCCCCCHHHHHHHHHHHhh
Q psy15351         58 KHESLIEEKVRK----EQ----SHISEVIFTNCRNPNCKGVQKILPTLQHISD  102 (352)
Q Consensus        58 ~~~~~~~~~~~~----~~----~~~~~v~~iSa~~~~~~gi~~L~~~i~~~~~  102 (352)
                      ...++..+++..    ..    .....++.+||+++  .|++++++++.+.+.
T Consensus       293 ~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~--~nV~~vF~~v~~~i~  343 (353)
T 1cip_A          293 NTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDT--KNVQFVFDAVTDVII  343 (353)
T ss_dssp             SCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCH--HHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCc--hhHHHHHHHHHHHHH
Confidence            122344444431    10    01113778999999  999999998876553

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=96.98  E-value=0.00036  Score=70.74  Aligned_cols=67  Identities=21%  Similarity=0.250  Sum_probs=40.7

Q ss_pred             cceEEEEeCCCCCChHHHHHHHhCCCCC---CCCc---eecCC------CCCceeEeeeeEEecCCCcEEEEeCCCCCC
Q psy15351        167 YNTTVMVVGVPNVGKSSIINALRSSHMK---KGKA---VPVGP------KAGVTRSVMSQVKISEKPLIYILDTPGISL  233 (352)
Q Consensus       167 ~~~~v~i~G~pnvGKStliN~l~~~~~~---~~~~---~~~~~------~pg~T~~~~~~~~~~~~~~~~l~DtPGi~~  233 (352)
                      ...+++++|.+|+|||||+++|.+....   ....   ..+.+      ..|.|...+..........+.++||||...
T Consensus         8 ~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~~   86 (665)
T 2dy1_A            8 MIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGD   86 (665)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGG
T ss_pred             CCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCccc
Confidence            4578999999999999999999842100   0000   00111      234555444333333445689999999764

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*

Probab=96.96  E-value=0.0008  Score=62.01  Aligned_cols=59  Identities=19%  Similarity=0.205  Sum_probs=34.9

Q ss_pred             EEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCCcEEEEeCCCCCCC
Q psy15351        170 TVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLP  234 (352)
Q Consensus       170 ~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~~~  234 (352)
                      +|.++|..||||||+++.+.+... .......+++-|....     .+...-.+.++||||-...
T Consensus         1 KIvllGdsgvGKTSLl~~~~~~~~-~~~~~~~~~Tig~~~~-----~v~~~v~LqIWDTAGQErf   59 (331)
T 3r7w_B            1 MVLLMGVRRCGKSSICKVVFHNMQ-PLDTLYLESTSNPSLE-----HFSTLIDLAVMELPGQLNY   59 (331)
T ss_dssp             CEEEECSTTSSTTHHHHHHHSCCC-SGGGTTCCCCCSCCCE-----EECSSSCEEEEECCSCSSS
T ss_pred             CEEEECCCCCCHHHHHHHHHcCCC-CCccceecCeeeeeeE-----EEccEEEEEEEECCCchhc
Confidence            488999999999999998875210 0001112222232211     1112236899999997654

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=96.94  E-value=0.00015  Score=62.04  Aligned_cols=59  Identities=25%  Similarity=0.248  Sum_probs=38.0

Q ss_pred             cceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCCcEEEEeCCCC
Q psy15351        167 YNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGI  231 (352)
Q Consensus       167 ~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi  231 (352)
                      .+..++++|.+|+|||||++.|.+.    .........+.|||.+...-  .++..+.++|.+.+
T Consensus        18 ~g~~ivl~GPSGaGKsTL~~~L~~~----~~~~~~~~vs~TTR~p~~gE--~~G~~y~fvs~~~f   76 (197)
T 3ney_A           18 GRKTLVLIGASGVGRSHIKNALLSQ----NPEKFVYPVPYTTRPPRKSE--EDGKEYHFISTEEM   76 (197)
T ss_dssp             SCCEEEEECCTTSSHHHHHHHHHHH----CTTTEECCCCEECSCCCTTC--CTTSSCEECCHHHH
T ss_pred             CCCEEEEECcCCCCHHHHHHHHHhh----CCccEEeeecccccCCcCCe--eccccceeccHHHh
Confidence            4567899999999999999999852    11124456777888764321  22334555554443

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=96.88  E-value=0.00039  Score=61.61  Aligned_cols=24  Identities=21%  Similarity=0.422  Sum_probs=21.4

Q ss_pred             CcceEEEEeCCCCCChHHHHHHHh
Q psy15351        166 VYNTTVMVVGVPNVGKSSIINALR  189 (352)
Q Consensus       166 ~~~~~v~i~G~pnvGKStliN~l~  189 (352)
                      .+...+.+.|.+||||||+++.|.
T Consensus        12 ~~~~i~~~~GkgGvGKTTl~~~La   35 (262)
T 1yrb_A           12 MASMIVVFVGTAGSGKTTLTGEFG   35 (262)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHH
T ss_pred             cceEEEEEeCCCCCCHHHHHHHHH
Confidence            356788999999999999999997

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=96.87  E-value=0.0027  Score=53.38  Aligned_cols=86  Identities=17%  Similarity=0.077  Sum_probs=55.9

Q ss_pred             HHhhccCEEEEEEcCCCCCCCcCH-HHHHHHh----CCCCEEEEEEcccCCCccc--hHHHHHHHHhhcCCCCcEEEeec
Q psy15351         10 KHLKNVDIVIEVHDSRMPFTGRNH-LLQQSVQ----NIRPMVLVLNKRDLINSKH--ESLIEEKVRKEQSHISEVIFTNC   82 (352)
Q Consensus        10 ~~i~~aD~vl~VvDar~p~~~~~~-~l~~~l~----~~k~~ilVlNK~Dl~~~~~--~~~~~~~~~~~~~~~~~v~~iSa   82 (352)
                      .....+|.+++|.|..+..+..+. .+...+.    ...|+++|+||+|+.+...  .....+...+.++.   ++.+||
T Consensus        97 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~---~ld~Sa  173 (191)
T 1oix_A           97 AYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLS---FIETSA  173 (191)
T ss_dssp             HHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCE---EEECCT
T ss_pred             HHhhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCE---EEEEeC
Confidence            345678999999998765322111 1111111    3578999999999975322  23333344444444   778999


Q ss_pred             CCCCCCCHHHHHHHHHHH
Q psy15351         83 RNPNCKGVQKILPTLQHI  100 (352)
Q Consensus        83 ~~~~~~gi~~L~~~i~~~  100 (352)
                      +++  .|++++++.+.+.
T Consensus       174 ld~--~~v~~l~~~l~~~  189 (191)
T 1oix_A          174 LDS--TNVEAAFQTILTE  189 (191)
T ss_dssp             TTC--TTHHHHHHHHHHH
T ss_pred             CCC--CCHHHHHHHHHHH
Confidence            999  9999999988654

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*

Probab=96.83  E-value=0.00046  Score=64.70  Aligned_cols=90  Identities=13%  Similarity=0.144  Sum_probs=55.4

Q ss_pred             HhhccCEEEEEEcCCCCC---------CCcC---HHHHHHHh----CCCCEEEEEEcccCCCc-----------------
Q psy15351         11 HLKNVDIVIEVHDSRMPF---------TGRN---HLLQQSVQ----NIRPMVLVLNKRDLINS-----------------   57 (352)
Q Consensus        11 ~i~~aD~vl~VvDar~p~---------~~~~---~~l~~~l~----~~k~~ilVlNK~Dl~~~-----------------   57 (352)
                      ..++++.+|+|+|..+..         ....   ..+..++.    .+.|+++|+||+||..+                 
T Consensus       221 ~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~~~piILv~NK~DL~~~ki~~~~l~~~fp~y~g~  300 (362)
T 1zcb_A          221 CFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGD  300 (362)
T ss_dssp             SCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSC
T ss_pred             HhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhCCCCEEEEEEChhhhhhhccccchhhcCccccCC
Confidence            457899999999998631         1111   11222222    36799999999998521                 


Q ss_pred             -cchHHHHHHHH----hhc----CCCCcEEEeecCCCCCCCHHHHHHHHHHHhh
Q psy15351         58 -KHESLIEEKVR----KEQ----SHISEVIFTNCRNPNCKGVQKILPTLQHISD  102 (352)
Q Consensus        58 -~~~~~~~~~~~----~~~----~~~~~v~~iSa~~~~~~gi~~L~~~i~~~~~  102 (352)
                       ...++..+++.    ...    .....++.+||+++  .|++++++++.+.+.
T Consensus       301 ~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~--~nV~~vF~~v~~~i~  352 (362)
T 1zcb_A          301 PHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINT--ENIRLVFRDVKDTIL  352 (362)
T ss_dssp             TTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCH--HHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCc--hhHHHHHHHHHHHHH
Confidence             12333444331    110    01113778999999  999999998876543

>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2

Probab=96.81  E-value=0.0018  Score=59.28  Aligned_cols=88  Identities=19%  Similarity=0.312  Sum_probs=57.5

Q ss_pred             CCCCEEEEEEcccCCCccchHHHHHHHHhhcCCCCcEEEeecCCCCCCCHHHHHHHHHHHhhhccccccccccceeEEEe
Q psy15351         41 NIRPMVLVLNKRDLINSKHESLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV  120 (352)
Q Consensus        41 ~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~v~~iSa~~~~~~gi~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~  120 (352)
                      ...| .+|++|.|..+++    .++..++.+++   ++.++..+.  +.+..|..++...+......|            
T Consensus        79 ~~~P-~IIltrg~~~pee----lie~A~~~~IP---VL~T~~~ts--~~~~~l~~~l~~~~~~~~~~H------------  136 (314)
T 1ko7_A           79 PETP-AIIVTRDLEPPEE----LIEAAKEHETP---LITSKIATT--QLMSRLTTFLEHELARTTSLH------------  136 (314)
T ss_dssp             TTCC-CEEECTTCCCCHH----HHHHHHHTTCC---EEECCSCHH--HHHHHHHHHHHHHTCEEEEEE------------
T ss_pred             CCCC-EEEEeCCCCCCHH----HHHHHHHCCCe---EEEECCchh--HHHHHHHHHHHHhhccceeee------------
Confidence            3556 6799999987554    44444555776   888887777  777777777665433211000            


Q ss_pred             ccCCCCchhHHHHHhhhhcccCCCCCCCcchhhhhccccccccccCcceEEEEeCCCCCChHHHHHHHhC
Q psy15351        121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIINALRS  190 (352)
Q Consensus       121 g~~nvgksslin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~G~pnvGKStliN~l~~  190 (352)
                      |.                                     -.   .-.+.-+++.|.+|+||||+.+.|..
T Consensus       137 ~~-------------------------------------~v---~~~g~~vl~~G~sG~GKSt~a~~l~~  166 (314)
T 1ko7_A          137 GV-------------------------------------LV---DVYGVGVLITGDSGIGKSETALELIK  166 (314)
T ss_dssp             SE-------------------------------------EE---EETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred             EE-------------------------------------EE---EECCEEEEEEeCCCCCHHHHHHHHHh
Confidence            00                                     00   11346799999999999999999986

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=96.68  E-value=0.00099  Score=62.30  Aligned_cols=84  Identities=12%  Similarity=0.071  Sum_probs=52.4

Q ss_pred             HHHHHHhhccCEEEEEEcCCCCCCCcCH--HHHHHHh-CCCCEEEEEEcccCCCccchHHHHHHHHh----hcCCCCcEE
Q psy15351          6 KDIEKHLKNVDIVIEVHDSRMPFTGRNH--LLQQSVQ-NIRPMVLVLNKRDLINSKHESLIEEKVRK----EQSHISEVI   78 (352)
Q Consensus         6 ~~~~~~i~~aD~vl~VvDar~p~~~~~~--~l~~~l~-~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~----~~~~~~~v~   78 (352)
                      ..+...+.++|++|+|+|+.........  .+.+.+. .++|+++|+||+|++++...  +.+.+..    .+.   +++
T Consensus       164 ~~~~~~i~~~d~iilvv~~~~~~~~~~~~~~l~~~~~~~~~~~i~V~nK~Dl~~~~~~--~~~~~~~~~~~~~~---~~~  238 (360)
T 3t34_A          164 NMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPSGDRTFGVLTKIDLMDKGTD--AVEILEGRSFKLKY---PWV  238 (360)
T ss_dssp             HHHHHHHHSSSEEEEEEEETTSCGGGCHHHHHHHHSCTTCTTEEEEEECGGGCCTTCC--SHHHHTTSSSCCSS---CCE
T ss_pred             HHHHHHhhcCCeEEEEeecccCCcCCHHHHHHHHHhcccCCCEEEEEeCCccCCCccc--HHHHHcCccccccC---CeE
Confidence            4466788999999999986532222122  2223332 47899999999999876431  2222221    133   478


Q ss_pred             EeecCCCCCCCHHHHHHH
Q psy15351         79 FTNCRNPNCKGVQKILPT   96 (352)
Q Consensus        79 ~iSa~~~~~~gi~~L~~~   96 (352)
                      .+|++++  .++++....
T Consensus       239 ~v~~~s~--~~i~~~~~~  254 (360)
T 3t34_A          239 GVVNRSQ--ADINKNVDM  254 (360)
T ss_dssp             EECCCCH--HHHHTTCCH
T ss_pred             EEEECCh--HHhccCCCH
Confidence            8999988  777654433

>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}

Probab=96.67  E-value=0.0017  Score=64.29  Aligned_cols=62  Identities=15%  Similarity=0.203  Sum_probs=43.2

Q ss_pred             HHHHHHhhccCEEEEEEcCCCC-CCCcCHHHHHHHh-CCCCEEEEEEcccCCCccchHHHHHHH
Q psy15351          6 KDIEKHLKNVDIVIEVHDSRMP-FTGRNHLLQQSVQ-NIRPMVLVLNKRDLINSKHESLIEEKV   67 (352)
Q Consensus         6 ~~~~~~i~~aD~vl~VvDar~p-~~~~~~~l~~~l~-~~k~~ilVlNK~Dl~~~~~~~~~~~~~   67 (352)
                      +.+...+..+|++|+|+|+..+ .......+.+.++ .+.|+++|+||+|+++++.+....+.+
T Consensus       180 ~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~pvilVlNK~Dl~~~~el~~~~~~l  243 (550)
T 2qpt_A          180 AVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRGHEDKIRVVLNKADMVETQQLMRVYGAL  243 (550)
T ss_dssp             HHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTTCGGGEEEEEECGGGSCHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHhcCCCEEEEEECCCccCHHHHHHHHHHh
Confidence            3456678999999999999874 3333333444443 457899999999999876655554444

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=96.65  E-value=0.002  Score=59.67  Aligned_cols=87  Identities=10%  Similarity=0.065  Sum_probs=51.7

Q ss_pred             HhhccCEEEEEEcCCCCCCCcCHHHHHHHhCCCCEEEEEEcccCCCccc-hHHHHHHHHhh----cC---C-CCcEEEee
Q psy15351         11 HLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKH-ESLIEEKVRKE----QS---H-ISEVIFTN   81 (352)
Q Consensus        11 ~i~~aD~vl~VvDar~p~~~~~~~l~~~l~~~k~~ilVlNK~Dl~~~~~-~~~~~~~~~~~----~~---~-~~~v~~iS   81 (352)
                      ..+.+|++++|+|+..+...  ..+...+ ...+.++|+||+|+.+... .....+.+...    ..   . ..+++++|
T Consensus       165 v~~~~d~vl~v~d~~~~~~~--~~i~~~i-~~~~~ivvlNK~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~~S  241 (337)
T 2qm8_A          165 VADLTDFFLVLMLPGAGDEL--QGIKKGI-FELADMIAVNKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVTIS  241 (337)
T ss_dssp             HHTTSSEEEEEECSCC--------CCTTH-HHHCSEEEEECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEEEB
T ss_pred             HHhhCCEEEEEEcCCCcccH--HHHHHHH-hccccEEEEEchhccCchhHHHHHHHHHHHHHHhccccccCCCCCEEEEe
Confidence            45789999999998543110  0010001 1235688889999875332 11222222211    10   0 12589999


Q ss_pred             cCCCCCCCHHHHHHHHHHHhh
Q psy15351         82 CRNPNCKGVQKILPTLQHISD  102 (352)
Q Consensus        82 a~~~~~~gi~~L~~~i~~~~~  102 (352)
                      |+++  .|+++|++.|.++.+
T Consensus       242 al~g--~gi~~L~~~I~~~~~  260 (337)
T 2qm8_A          242 GLHG--KGLDSLWSRIEDHRS  260 (337)
T ss_dssp             TTTT--BSHHHHHHHHHHHHH
T ss_pred             CCCC--CCHHHHHHHHHHHHH
Confidence            9999  999999999988765

>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}

Probab=96.63  E-value=0.0073  Score=61.66  Aligned_cols=53  Identities=15%  Similarity=0.127  Sum_probs=42.3

Q ss_pred             HHHHHHHHhhccCEEEEEEcCCCCCCCcCHHHHHHHh-CCCCEEEEEEcccCCC
Q psy15351          4 GLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQ-NIRPMVLVLNKRDLIN   56 (352)
Q Consensus         4 ~~~~~~~~i~~aD~vl~VvDar~p~~~~~~~l~~~l~-~~k~~ilVlNK~Dl~~   56 (352)
                      +..++.+++.-+|.+|+|+||..+....-..+.+... .+.|.++++||+|...
T Consensus        98 F~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~~~lp~i~~iNKiDr~~  151 (709)
T 4fn5_A           98 FTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANKYGVPRIVYVNKMDRQG  151 (709)
T ss_dssp             CHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHHTCCEEEEEECSSSTT
T ss_pred             cHHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEccccccC
Confidence            3457788999999999999999888766555554433 6889999999999754

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=96.56  E-value=0.00049  Score=66.05  Aligned_cols=24  Identities=21%  Similarity=0.459  Sum_probs=21.3

Q ss_pred             cceEEEEeCCCCCChHHHHHHHhC
Q psy15351        167 YNTTVMVVGVPNVGKSSIINALRS  190 (352)
Q Consensus       167 ~~~~v~i~G~pnvGKStliN~l~~  190 (352)
                      ++..|+++|.|||||||+++.|..
T Consensus        98 ~~~vI~ivG~~GvGKTTla~~La~  121 (432)
T 2v3c_C           98 KQNVILLVGIQGSGKTTTAAKLAR  121 (432)
T ss_dssp             SCCCEEEECCSSSSTTHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            356799999999999999999985

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=96.56  E-value=0.0017  Score=62.01  Aligned_cols=83  Identities=6%  Similarity=0.083  Sum_probs=41.7

Q ss_pred             cCEEEEEEcCC-CCCCCcCHHHHHHHhCCCCEEEEEEcccCCCccchH----HHHHHHHhhcCCCCcEEEeecCCCCCCC
Q psy15351         15 VDIVIEVHDSR-MPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHES----LIEEKVRKEQSHISEVIFTNCRNPNCKG   89 (352)
Q Consensus        15 aD~vl~VvDar-~p~~~~~~~l~~~l~~~k~~ilVlNK~Dl~~~~~~~----~~~~~~~~~~~~~~~v~~iSa~~~~~~g   89 (352)
                      ++++|++++.+ ..+...+..+.+.+..+.|+|+|+||+|++.+..+.    .+.+.+...++.   ++.+|+.++  .+
T Consensus       139 ~~vlL~ldePt~~~L~~~d~~~lk~L~~~v~iIlVinK~Dll~~~ev~~~k~~i~~~~~~~~i~---~~~~sa~~~--~~  213 (418)
T 2qag_C          139 VQCCLYFIAPSGHGLKPLDIEFMKRLHEKVNIIPLIAKADTLTPEECQQFKKQIMKEIQEHKIK---IYEFPETDD--EE  213 (418)
T ss_dssp             CCEEEEECCC-CCSCCHHHHHHHHHHTTTSEEEEEEESTTSSCHHHHHHHHHHHHHHHHHHTCC---CCCCC--------
T ss_pred             eeEEEEEecCcccCCCHHHHHHHHHHhccCcEEEEEEcccCccHHHHHHHHHHHHHHHHHcCCe---EEeCCCCCC--cC
Confidence            45677777654 445444433444444578999999999998765443    334445555665   788999988  88


Q ss_pred             HHHHHHHHHHHhh
Q psy15351         90 VQKILPTLQHISD  102 (352)
Q Consensus        90 i~~L~~~i~~~~~  102 (352)
                      ++++...+.+.+|
T Consensus       214 v~~~~~~l~~~iP  226 (418)
T 2qag_C          214 ENKLVKKIKDRLP  226 (418)
T ss_dssp             -----------CC
T ss_pred             HHHHHHHHHhhCC
Confidence            8877666665444

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=96.52  E-value=0.0045  Score=52.91  Aligned_cols=70  Identities=19%  Similarity=0.177  Sum_probs=38.1

Q ss_pred             hccCEEEEEEcCC-CCCCCc--CHHHHHHHh-------CCCCEEEEEEcccCCCccchHHHHHHHH--------hhcCCC
Q psy15351         13 KNVDIVIEVHDSR-MPFTGR--NHLLQQSVQ-------NIRPMVLVLNKRDLINSKHESLIEEKVR--------KEQSHI   74 (352)
Q Consensus        13 ~~aD~vl~VvDar-~p~~~~--~~~l~~~l~-------~~k~~ilVlNK~Dl~~~~~~~~~~~~~~--------~~~~~~   74 (352)
                      ..+|++|+|+|+. ++.+..  ...+.+++.       .+.|+++|+||+|+.+......+.+.+.        ..+.  
T Consensus        81 ~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~--  158 (218)
T 1nrj_B           81 KFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALESEIQKVIERRKK--  158 (218)
T ss_dssp             GGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHHHH--
T ss_pred             ccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCCHHHHHHHHHHHHHHHHHHHhc--
Confidence            4489999999998 432221  122333322       3789999999999987755433322221        1122  


Q ss_pred             CcEEEeecCCC
Q psy15351         75 SEVIFTNCRNP   85 (352)
Q Consensus        75 ~~v~~iSa~~~   85 (352)
                       .++.+||+++
T Consensus       159 -~~~~~Sa~~~  168 (218)
T 1nrj_B          159 -SLNEVERKIN  168 (218)
T ss_dssp             -HHHC------
T ss_pred             -cccccccccc
Confidence             3667888877

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*

Probab=96.50  E-value=0.0037  Score=57.55  Aligned_cols=88  Identities=13%  Similarity=0.135  Sum_probs=52.7

Q ss_pred             HHHhhccCEEEEEEcCCCCCCCcCHHHHHHHh------CCCCEEEEEEcccCCCccchH----HHHH----HHHhhcC--
Q psy15351          9 EKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQ------NIRPMVLVLNKRDLINSKHES----LIEE----KVRKEQS--   72 (352)
Q Consensus         9 ~~~i~~aD~vl~VvDar~p~~~~~~~l~~~l~------~~k~~ilVlNK~Dl~~~~~~~----~~~~----~~~~~~~--   72 (352)
                      ......++.+|+|+|+++.+...-..+.+++.      .+.|+++|.||+||.+++...    ....    .+.+.+.  
T Consensus        67 ~~yyr~a~~~IlV~Ditd~~~~~~~~l~~~l~~~~~~~~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~  146 (331)
T 3r7w_B           67 ERLFKSVGALVYVIDSQDEYINAITNLAMIIEYAYKVNPSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDG  146 (331)
T ss_dssp             HHHHTTCSEEEEECCCSSCTTHHHHHHHHHHHHHHHHCTTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSC
T ss_pred             hhhccCCCEEEEEEECCchHHHHHHHHHHHHHHHhhcCCCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcccc
Confidence            35678999999999999862111122322221      467999999999998764321    1111    1222111  


Q ss_pred             CCCcEEEeecCCCCCCCHHHHHHHHHH
Q psy15351         73 HISEVIFTNCRNPNCKGVQKILPTLQH   99 (352)
Q Consensus        73 ~~~~v~~iSa~~~~~~gi~~L~~~i~~   99 (352)
                      ....++.+||++   .++.+.+..+.+
T Consensus       147 ~~i~f~eTSAkd---~nV~eAFs~iv~  170 (331)
T 3r7w_B          147 VQVSFYLTSIFD---HSIYEAFSRIVQ  170 (331)
T ss_dssp             CCEEEECCCSSS---SHHHHHHHHHHT
T ss_pred             cCceEEEeccCC---CcHHHHHHHHHH
Confidence            011367789986   578887776654

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=96.47  E-value=0.0032  Score=52.57  Aligned_cols=60  Identities=22%  Similarity=0.223  Sum_probs=38.1

Q ss_pred             HHHhhccCEEEEEEcCC-CCCCCc--CHHHHHHHh-------CCCCEEEEEEcccCCCccchHHHHHHHH
Q psy15351          9 EKHLKNVDIVIEVHDSR-MPFTGR--NHLLQQSVQ-------NIRPMVLVLNKRDLINSKHESLIEEKVR   68 (352)
Q Consensus         9 ~~~i~~aD~vl~VvDar-~p~~~~--~~~l~~~l~-------~~k~~ilVlNK~Dl~~~~~~~~~~~~~~   68 (352)
                      ...+..+|++++|+|+. ++.+..  ...+..++.       .+.|+++|+||+|+.+......+.+.+.
T Consensus       113 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~  182 (193)
T 2ged_A          113 KTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALE  182 (193)
T ss_dssp             HHHGGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHH
T ss_pred             HhhcccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCCCHHHHHHHHH
Confidence            34456699999999998 321111  112222221       2789999999999988766555555543

>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*

Probab=96.35  E-value=0.008  Score=57.61  Aligned_cols=23  Identities=26%  Similarity=0.258  Sum_probs=19.8

Q ss_pred             cceEEEEeCCCCCChHHHHHHHh
Q psy15351        167 YNTTVMVVGVPNVGKSSIINALR  189 (352)
Q Consensus       167 ~~~~v~i~G~pnvGKStliN~l~  189 (352)
                      +-..|+|+|.+++|||+|+|.|.
T Consensus        66 ~v~vvsv~G~~~~gks~l~N~ll   88 (457)
T 4ido_A           66 EVVAVSVAGAFRKGKSFLMDFML   88 (457)
T ss_dssp             BEEEEEEEEBTTSSHHHHHHHHH
T ss_pred             ceEEEEEECCCCCchhHHHHHHH
Confidence            34678899999999999999775

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=96.30  E-value=0.0037  Score=62.68  Aligned_cols=22  Identities=36%  Similarity=0.599  Sum_probs=20.5

Q ss_pred             EEEEeCCCCCChHHHHHHHhCC
Q psy15351        170 TVMVVGVPNVGKSSIINALRSS  191 (352)
Q Consensus       170 ~v~i~G~pnvGKStliN~l~~~  191 (352)
                      .++++|.+|+|||||+++|.|.
T Consensus        47 ~iaIvG~nGsGKSTLL~~I~Gl   68 (608)
T 3szr_A           47 AIAVIGDQSSGKSSVLEALSGV   68 (608)
T ss_dssp             CEECCCCTTSCHHHHHHHHHSC
T ss_pred             eEEEECCCCChHHHHHHHHhCC
Confidence            4999999999999999999985

>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}

Probab=96.24  E-value=0.0023  Score=59.78  Aligned_cols=89  Identities=19%  Similarity=0.165  Sum_probs=52.6

Q ss_pred             HhhccCEEEEEEcCCC-------C-CCCcCHH----HHHHHh----CCCCEEEEEEcccCCCcc----------------
Q psy15351         11 HLKNVDIVIEVHDSRM-------P-FTGRNHL----LQQSVQ----NIRPMVLVLNKRDLINSK----------------   58 (352)
Q Consensus        11 ~i~~aD~vl~VvDar~-------p-~~~~~~~----l~~~l~----~~k~~ilVlNK~Dl~~~~----------------   58 (352)
                      ....++.+|+|+|...       . -...-.+    +..+..    .+.|+++|+||+||..+.                
T Consensus       203 y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~DL~~~k~~~v~l~~~~~fp~y~  282 (354)
T 2xtz_A          203 LFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLDVPLNVCEWFRDYQ  282 (354)
T ss_dssp             GCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECHHHHHHHTTTSCGGGSGGGTTCC
T ss_pred             HhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECcchhhhhcccccccccccccccc
Confidence            4678999999999861       1 1111112    222222    357999999999984211                


Q ss_pred             -------chHHHHHHHHhh-------c------CCCCcEEEeecCCCCCCCHHHHHHHHHHHh
Q psy15351         59 -------HESLIEEKVRKE-------Q------SHISEVIFTNCRNPNCKGVQKILPTLQHIS  101 (352)
Q Consensus        59 -------~~~~~~~~~~~~-------~------~~~~~v~~iSa~~~~~~gi~~L~~~i~~~~  101 (352)
                             ..++..+++.+.       .      .....++.+||+++  .|++++++++.+.+
T Consensus       283 ~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~--~nV~~vF~~v~~~I  343 (354)
T 2xtz_A          283 PVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQ--KLVKKTFKLVDETL  343 (354)
T ss_dssp             CCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCH--HHHHHHHHHHHHHH
T ss_pred             cccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecc--hhHHHHHHHHHHHH
Confidence                   012233332221       0      01012578999999  99999998887654

>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}

Probab=96.16  E-value=0.0023  Score=64.52  Aligned_cols=65  Identities=20%  Similarity=0.198  Sum_probs=39.9

Q ss_pred             EEEEeCCCCCChHHHHHHHhCCC--CCCC----CceecCC------CCCceeEeeeeEEecCCCcEEEEeCCCCCCC
Q psy15351        170 TVMVVGVPNVGKSSIINALRSSH--MKKG----KAVPVGP------KAGVTRSVMSQVKISEKPLIYILDTPGISLP  234 (352)
Q Consensus       170 ~v~i~G~pnvGKStliN~l~~~~--~~~~----~~~~~~~------~pg~T~~~~~~~~~~~~~~~~l~DtPGi~~~  234 (352)
                      +|+|+|....|||||..+|....  +.+.    ...++.+      ..|.|...........+..+.|+||||-.+.
T Consensus         4 Ni~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF   80 (638)
T 3j25_A            4 NIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDF   80 (638)
T ss_dssp             CCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSST
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHH
Confidence            58999999999999999986320  1000    0111111      1255555433233345567999999998864

>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*

Probab=96.01  E-value=0.0051  Score=58.29  Aligned_cols=24  Identities=13%  Similarity=0.295  Sum_probs=20.1

Q ss_pred             EEEeecCCCCCCCHHHHHHHHHHHhh
Q psy15351         77 VIFTNCRNPNCKGVQKILPTLQHISD  102 (352)
Q Consensus        77 v~~iSa~~~~~~gi~~L~~~i~~~~~  102 (352)
                      ++++||+++  .|+++++..+.+.+.
T Consensus       361 ~~~TSA~d~--~nV~~vF~~v~~~I~  384 (402)
T 1azs_C          361 PHFTCAVDT--ENIRRVFNDCRDIIQ  384 (402)
T ss_dssp             EEECCTTCH--HHHHHHHHHHHHHHH
T ss_pred             EEEEEeecC--cCHHHHHHHHHHHHH
Confidence            568999999  999999998876553

>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*

Probab=96.00  E-value=0.0052  Score=56.62  Aligned_cols=90  Identities=18%  Similarity=0.250  Sum_probs=54.6

Q ss_pred             HhhccCEEEEEEcCCC------CCCCcC--H----HHHHHHh----CCCCEEEEEEcccCCCcc----------------
Q psy15351         11 HLKNVDIVIEVHDSRM------PFTGRN--H----LLQQSVQ----NIRPMVLVLNKRDLINSK----------------   58 (352)
Q Consensus        11 ~i~~aD~vl~VvDar~------p~~~~~--~----~l~~~l~----~~k~~ilVlNK~Dl~~~~----------------   58 (352)
                      ....++.+|+|+|...      .....+  .    .+..++.    .+.|+++++||+||..+.                
T Consensus       187 yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~~~~~iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~  266 (327)
T 3ohm_A          187 CFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGP  266 (327)
T ss_dssp             GCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGGTTCEEEEEEECHHHHHHHTTTSCGGGTCTTCCSC
T ss_pred             HhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhccCCceEEEEEECchhhhhhhccchHhhhchhccCC
Confidence            5688999999997641      011111  1    1222332    367999999999985421                


Q ss_pred             --chHHHHHHHHhh----c---CCCCcEEEeecCCCCCCCHHHHHHHHHHHhh
Q psy15351         59 --HESLIEEKVRKE----Q---SHISEVIFTNCRNPNCKGVQKILPTLQHISD  102 (352)
Q Consensus        59 --~~~~~~~~~~~~----~---~~~~~v~~iSa~~~~~~gi~~L~~~i~~~~~  102 (352)
                        ..++..+++.+.    .   ...-.++++||++.  .|++.++..+.+.+-
T Consensus       267 ~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~--~nV~~vF~~v~~~Il  317 (327)
T 3ohm_A          267 QRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDT--ENIRFVFAAVKDTIL  317 (327)
T ss_dssp             SSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCH--HHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecC--HHHHHHHHHHHHHHH
Confidence              233444443211    1   00013678999999  999999988876543

>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}

Probab=95.81  E-value=0.0025  Score=59.05  Aligned_cols=94  Identities=13%  Similarity=0.093  Sum_probs=56.0

Q ss_pred             HHHHH-HhhccCEEEEEEcCCCCC------CCcC--H----HHHHHHh----CCCCEEEEEEcccCCCcc----------
Q psy15351          6 KDIEK-HLKNVDIVIEVHDSRMPF------TGRN--H----LLQQSVQ----NIRPMVLVLNKRDLINSK----------   58 (352)
Q Consensus         6 ~~~~~-~i~~aD~vl~VvDar~p~------~~~~--~----~l~~~l~----~~k~~ilVlNK~Dl~~~~----------   58 (352)
                      +..|. ....++.+|+|+|..+..      ...+  .    .+..++.    .+.|+++++||+||..+.          
T Consensus       175 R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~~~piiLv~NK~DL~~eki~~~~l~~~f  254 (340)
T 4fid_A          175 RKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLKGAVKLIFLNKMDLFEEKLTKVPLNTIF  254 (340)
T ss_dssp             HHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGTTSEEEEEEECHHHHHHHHHHSCGGGTC
T ss_pred             cccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhccCCCeEEEEEECchhhhhhcCcchHHHhh
Confidence            44443 568999999999986210      0111  1    1222332    467999999999985321          


Q ss_pred             -------chHHHHHHHHhhc--------C----------------CCCcEEEeecCCCCCCCHHHHHHHHHHHh
Q psy15351         59 -------HESLIEEKVRKEQ--------S----------------HISEVIFTNCRNPNCKGVQKILPTLQHIS  101 (352)
Q Consensus        59 -------~~~~~~~~~~~~~--------~----------------~~~~v~~iSa~~~~~~gi~~L~~~i~~~~  101 (352)
                             ..++..+++.+..        .                ..-.++++||++.  .+++.+++.+.+.+
T Consensus       255 p~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~TsA~dt--~nv~~vF~~v~~~I  326 (340)
T 4fid_A          255 PEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNPTNATDG--SNIKRVFMLAVDVI  326 (340)
T ss_dssp             TTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEEECTTCH--HHHHHHHHHHHHHH
T ss_pred             hhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEEEEeeCc--HHHHHHHHHHHHHH
Confidence                   1233334433222        0                0013678999999  99999888877544

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=95.79  E-value=0.013  Score=53.33  Aligned_cols=82  Identities=10%  Similarity=0.080  Sum_probs=42.1

Q ss_pred             ccCEEEEEEcCCC-CCCCcCHHHHHHHhCCCCEEEEEEcccCCCccch----HHHHHHHHhhcCCCCcEEEeecCCCCCC
Q psy15351         14 NVDIVIEVHDSRM-PFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE----SLIEEKVRKEQSHISEVIFTNCRNPNCK   88 (352)
Q Consensus        14 ~aD~vl~VvDar~-p~~~~~~~l~~~l~~~k~~ilVlNK~Dl~~~~~~----~~~~~~~~~~~~~~~~v~~iSa~~~~~~   88 (352)
                      ++++++++++... .+...+..+.+.+....++++|+||+|+..+..+    ++..+++++.++.   ++.+||+++   
T Consensus       126 ra~~ll~ldePt~~~Ld~~~~~~l~~l~~~~~iilV~~K~Dl~~~~e~~~~~~~~~~~~~~~~~~---~~e~Sa~~~---  199 (301)
T 2qnr_A          126 RVHCCFYFISPFGHGLKPLDVAFMKAIHNKVNIVPVIAKADTLTLKERERLKKRILDEIEEHNIK---IYHLPDAES---  199 (301)
T ss_dssp             CCCEEEEEECSSSSSCCHHHHHHHHHHTTTSCEEEEECCGGGSCHHHHHHHHHHHHHHHHHTTCC---CCCCC-------
T ss_pred             hhhheeeeecCcccCCCHHHHHHHHHHHhcCCEEEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCe---EEecCCccc---
Confidence            3455666665322 2322222222223245689999999999875432    2334445555665   888999875   


Q ss_pred             CHHHHHHHHHHHh
Q psy15351         89 GVQKILPTLQHIS  101 (352)
Q Consensus        89 gi~~L~~~i~~~~  101 (352)
                      |+++++..+.+.+
T Consensus       200 ~v~e~f~~l~~~i  212 (301)
T 2qnr_A          200 DEDEDFKEQTRLL  212 (301)
T ss_dssp             -----CHHHHHHH
T ss_pred             cccHHHHHHHHHh
Confidence            6777776665544

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=95.68  E-value=0.0054  Score=51.32  Aligned_cols=21  Identities=24%  Similarity=0.714  Sum_probs=19.7

Q ss_pred             EEEEeCCCCCChHHHHHHHhC
Q psy15351        170 TVMVVGVPNVGKSSIINALRS  190 (352)
Q Consensus       170 ~v~i~G~pnvGKStliN~l~~  190 (352)
                      +++++|.+|+|||||++.|.+
T Consensus         2 ~i~l~G~nGsGKTTLl~~l~g   22 (178)
T 1ye8_A            2 KIIITGEPGVGKTTLVKKIVE   22 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999999986

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=95.65  E-value=0.0056  Score=58.68  Aligned_cols=96  Identities=18%  Similarity=0.185  Sum_probs=0.0

Q ss_pred             CcceEEEEeCCCCCChHHHHHHHhCCCCCCCCce-----------------ecCCCCCceeEeeeeEEec----------
Q psy15351        166 VYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAV-----------------PVGPKAGVTRSVMSQVKIS----------  218 (352)
Q Consensus       166 ~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~-----------------~~~~~pg~T~~~~~~~~~~----------  218 (352)
                      .++..|+++|.+||||||+++.|...-...+..+                 ..+...|..........-.          
T Consensus        98 ~~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~  177 (443)
T 3dm5_A           98 EKPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDY  177 (443)
T ss_dssp             SSSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHH
T ss_pred             CCCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHH


Q ss_pred             ---CCCcEEEEeCCCCCCCCCCCHHHHHHHHHHhhhhhhccchhhhhHhHHhhhcCC
Q psy15351        219 ---EKPLIYILDTPGISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRT  272 (352)
Q Consensus       219 ---~~~~~~l~DtPGi~~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~il~~~~~~  272 (352)
                         .+..+.++||||....   +.+....+.....+..        ++.+++|++..
T Consensus       178 a~~~~~DvVIIDTaGrl~~---d~~lm~el~~i~~~~~--------pd~vlLVvDA~  223 (443)
T 3dm5_A          178 FKSKGVDIIIVDTAGRHKE---DKALIEEMKQISNVIH--------PHEVILVIDGT  223 (443)
T ss_dssp             HHHTTCSEEEEECCCCSSC---CHHHHHHHHHHHHHHC--------CSEEEEEEEGG
T ss_pred             HHhCCCCEEEEECCCcccc---hHHHHHHHHHHHHhhc--------CceEEEEEeCC

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=95.40  E-value=0.0083  Score=49.98  Aligned_cols=23  Identities=30%  Similarity=0.546  Sum_probs=20.6

Q ss_pred             ceEEEEeCCCCCChHHHHHHHhC
Q psy15351        168 NTTVMVVGVPNVGKSSIINALRS  190 (352)
Q Consensus       168 ~~~v~i~G~pnvGKStliN~l~~  190 (352)
                      +-.++++|.+|+|||||++.|.+
T Consensus         5 g~~i~i~GpsGsGKSTL~~~L~~   27 (180)
T 1kgd_A            5 RKTLVLLGAHGVGRRHIKNTLIT   27 (180)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHh
Confidence            34689999999999999999986

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=95.38  E-value=0.0068  Score=51.45  Aligned_cols=22  Identities=27%  Similarity=0.484  Sum_probs=20.2

Q ss_pred             eEEEEeCCCCCChHHHHHHHhC
Q psy15351        169 TTVMVVGVPNVGKSSIINALRS  190 (352)
Q Consensus       169 ~~v~i~G~pnvGKStliN~l~~  190 (352)
                      -.++++|.+|+|||||++.|.+
T Consensus         5 ~~i~lvGpsGaGKSTLl~~L~~   26 (198)
T 1lvg_A            5 RPVVLSGPSGAGKSTLLKKLFQ   26 (198)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHh
Confidence            4689999999999999999986

>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*

Probab=95.38  E-value=0.013  Score=60.92  Aligned_cols=50  Identities=18%  Similarity=0.157  Sum_probs=38.1

Q ss_pred             HHHHHHhhccCEEEEEEcCCCCCCCcCHHHHHH-HhCCCCEEEEEEcccCC
Q psy15351          6 KDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQS-VQNIRPMVLVLNKRDLI   55 (352)
Q Consensus         6 ~~~~~~i~~aD~vl~VvDar~p~~~~~~~l~~~-l~~~k~~ilVlNK~Dl~   55 (352)
                      ..+...+..+|.+|+|+|+.++.......+... ...+.|+++|+||+|+.
T Consensus       113 ~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~ilviNK~D~~  163 (842)
T 1n0u_A          113 SEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALGERIKPVVVINKVDRA  163 (842)
T ss_dssp             HHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHHTTCEEEEEEECHHHH
T ss_pred             HHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCeEEEEECCCcc
Confidence            346677899999999999998766554443332 23678999999999986

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=95.35  E-value=0.01  Score=49.61  Aligned_cols=24  Identities=33%  Similarity=0.523  Sum_probs=21.5

Q ss_pred             cceEEEEeCCCCCChHHHHHHHhC
Q psy15351        167 YNTTVMVVGVPNVGKSSIINALRS  190 (352)
Q Consensus       167 ~~~~v~i~G~pnvGKStliN~l~~  190 (352)
                      ++-.++++|.||+||||+++.|.+
T Consensus         8 ~g~~i~l~G~~GsGKSTl~~~La~   31 (191)
T 1zp6_A            8 GGNILLLSGHPGSGKSTIAEALAN   31 (191)
T ss_dssp             TTEEEEEEECTTSCHHHHHHHHHT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHh
Confidence            456799999999999999999986

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=95.27  E-value=0.005  Score=51.96  Aligned_cols=37  Identities=19%  Similarity=0.224  Sum_probs=26.0

Q ss_pred             EEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEe
Q psy15351        171 VMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSV  211 (352)
Q Consensus       171 v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~  211 (352)
                      |.++|.+||||+||++.|....    ...-.-..+.|||.+
T Consensus         4 IVi~GPSG~GK~Tl~~~L~~~~----~~~~~~svs~TTR~p   40 (186)
T 1ex7_A            4 IVISGPSGTGKSTLLKKLFAEY----PDSFGFSVSSTTRTP   40 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHC----TTTEEECCCEECSCC
T ss_pred             EEEECCCCCCHHHHHHHHHHhC----CCCeEEEEEEeccCC
Confidence            7899999999999999998421    111223456677765

>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}

Probab=95.26  E-value=0.031  Score=56.96  Aligned_cols=66  Identities=12%  Similarity=0.151  Sum_probs=34.0

Q ss_pred             eEEEEeCCCCCChHHHHHHHhCCC-----CCC-CCceec------CCCCCceeEeee-eEEecC------CCcEEEEeCC
Q psy15351        169 TTVMVVGVPNVGKSSIINALRSSH-----MKK-GKAVPV------GPKAGVTRSVMS-QVKISE------KPLIYILDTP  229 (352)
Q Consensus       169 ~~v~i~G~pnvGKStliN~l~~~~-----~~~-~~~~~~------~~~pg~T~~~~~-~~~~~~------~~~~~l~DtP  229 (352)
                      -+|+|+|....|||||..+|....     .+. ....++      ....|.|..... .+.+..      +..+.|+|||
T Consensus        14 RNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlIDTP   93 (709)
T 4fn5_A           14 RNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVIDTP   93 (709)
T ss_dssp             EEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEECCC
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEEeCC
Confidence            479999999999999999886310     000 000011      224455554432 122211      2358899999


Q ss_pred             CCCCC
Q psy15351        230 GISLP  234 (352)
Q Consensus       230 Gi~~~  234 (352)
                      |-.+.
T Consensus        94 GHvDF   98 (709)
T 4fn5_A           94 GHVDF   98 (709)
T ss_dssp             SCTTC
T ss_pred             CCccc
Confidence            99875

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=95.23  E-value=0.0098  Score=50.82  Aligned_cols=24  Identities=21%  Similarity=0.347  Sum_probs=21.4

Q ss_pred             cceEEEEeCCCCCChHHHHHHHhC
Q psy15351        167 YNTTVMVVGVPNVGKSSIINALRS  190 (352)
Q Consensus       167 ~~~~v~i~G~pnvGKStliN~l~~  190 (352)
                      ++..++++|.+|+||||+++.|.+
T Consensus         7 ~g~~i~l~GpsGsGKsTl~~~L~~   30 (208)
T 3tau_A            7 RGLLIVLSGPSGVGKGTVREAVFK   30 (208)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCcEEEEECcCCCCHHHHHHHHHh
Confidence            355789999999999999999986

>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A

Probab=95.22  E-value=0.043  Score=51.29  Aligned_cols=41  Identities=20%  Similarity=0.341  Sum_probs=26.9

Q ss_pred             CCCEEEEEEccc--CCCc---cchHHHHHHHHhhcCCCCcEEEeecCCC
Q psy15351         42 IRPMVLVLNKRD--LINS---KHESLIEEKVRKEQSHISEVIFTNCRNP   85 (352)
Q Consensus        42 ~k~~ilVlNK~D--l~~~---~~~~~~~~~~~~~~~~~~~v~~iSa~~~   85 (352)
                      .+|+++|.||+|  +.+.   .......++.++.+..   ++++||+..
T Consensus       201 ~KPvi~v~N~~e~d~~~~~~n~~~~~v~~~a~~~g~~---vv~iSAk~E  246 (368)
T 2dby_A          201 AKPVIYVANVAEEDLPDGRGNPQVEAVRRKALEEGAE---VVVVSARLE  246 (368)
T ss_dssp             GSCEEEEEECCGGGTTTCTTCHHHHHHHHHHHHHTCE---EEEECHHHH
T ss_pred             cCCeEEeccccHHhhcccchhhHHHHHHHHHHHcCCe---EEEeechhH
Confidence            389999999997  4432   2234444444444554   999998875

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=95.10  E-value=0.012  Score=50.17  Aligned_cols=25  Identities=32%  Similarity=0.448  Sum_probs=22.5

Q ss_pred             CcceEEEEeCCCCCChHHHHHHHhC
Q psy15351        166 VYNTTVMVVGVPNVGKSSIINALRS  190 (352)
Q Consensus       166 ~~~~~v~i~G~pnvGKStliN~l~~  190 (352)
                      +++..++|+|.+|+|||||++.|.+
T Consensus        20 ~~g~~v~I~G~sGsGKSTl~~~l~~   44 (208)
T 3c8u_A           20 PGRQLVALSGAPGSGKSTLSNPLAA   44 (208)
T ss_dssp             CSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            4567899999999999999999985

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=95.08  E-value=0.012  Score=49.56  Aligned_cols=23  Identities=22%  Similarity=0.398  Sum_probs=20.8

Q ss_pred             ceEEEEeCCCCCChHHHHHHHhC
Q psy15351        168 NTTVMVVGVPNVGKSSIINALRS  190 (352)
Q Consensus       168 ~~~v~i~G~pnvGKStliN~l~~  190 (352)
                      +-.++++|.+|+||||+++.|.+
T Consensus         7 g~ii~l~Gp~GsGKSTl~~~L~~   29 (205)
T 3tr0_A            7 ANLFIISAPSGAGKTSLVRALVK   29 (205)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CcEEEEECcCCCCHHHHHHHHHh
Confidence            45689999999999999999986

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=94.97  E-value=0.047  Score=48.50  Aligned_cols=46  Identities=11%  Similarity=0.206  Sum_probs=30.0

Q ss_pred             hccCEEEEEEcCCCC-CCCcCHHHHHHHh--CC----CCEEEEEEcccCCCcc
Q psy15351         13 KNVDIVIEVHDSRMP-FTGRNHLLQQSVQ--NI----RPMVLVLNKRDLINSK   58 (352)
Q Consensus        13 ~~aD~vl~VvDar~p-~~~~~~~l~~~l~--~~----k~~ilVlNK~Dl~~~~   58 (352)
                      ..+|++|+|+|+... +...+..+.+.+.  .+    +|+++|+||+|+.+++
T Consensus       118 ~~~d~il~v~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~~  170 (270)
T 1h65_A          118 KTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPD  170 (270)
T ss_dssp             CEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGG
T ss_pred             CCCCEEEEEEeCCCCcCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCcC
Confidence            379999999877542 2222223333332  12    5899999999998765

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=94.93  E-value=0.013  Score=55.95  Aligned_cols=64  Identities=6%  Similarity=0.088  Sum_probs=44.1

Q ss_pred             EEEEEEcCCCCCCCcCHHHHHHHhCCCCEEEEEEcccCCCccchHHHHHHHHh----hcCCCCcEEEeecC
Q psy15351         17 IVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHESLIEEKVRK----EQSHISEVIFTNCR   83 (352)
Q Consensus        17 ~vl~VvDar~p~~~~~~~l~~~l~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~----~~~~~~~v~~iSa~   83 (352)
                      ++++|+|++.++...+.++.+.+..+.|+|+|+||+|.+++.......+.+++    .|+.   ++++|.-
T Consensus       151 ~v~fI~d~~~~l~~~Dieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~---I~~is~~  218 (427)
T 2qag_B          151 CLYFIAPTGHSLKSLDLVTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQ---IYQFPTD  218 (427)
T ss_dssp             EEEEECCCC---CHHHHHHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCC---CCCCC--
T ss_pred             EEEEEeCCCCCCCHHHHHHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCc---EEecCCC
Confidence            57888999988877776666666567899999999999987766555555443    3555   8888854

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=94.81  E-value=0.016  Score=48.89  Aligned_cols=25  Identities=16%  Similarity=0.310  Sum_probs=21.9

Q ss_pred             cceEEEEeCCCCCChHHHHHHHhCC
Q psy15351        167 YNTTVMVVGVPNVGKSSIINALRSS  191 (352)
Q Consensus       167 ~~~~v~i~G~pnvGKStliN~l~~~  191 (352)
                      ++..++++|.+|+||||+++.|.+.
T Consensus         5 ~g~~i~l~G~~GsGKSTl~~~L~~~   29 (207)
T 2j41_A            5 KGLLIVLSGPSGVGKGTVRKRIFED   29 (207)
T ss_dssp             CCCEEEEECSTTSCHHHHHHHHHHC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHh
Confidence            3567999999999999999999863

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=94.75  E-value=0.015  Score=47.65  Aligned_cols=23  Identities=30%  Similarity=0.444  Sum_probs=20.5

Q ss_pred             ceEEEEeCCCCCChHHHHHHHhC
Q psy15351        168 NTTVMVVGVPNVGKSSIINALRS  190 (352)
Q Consensus       168 ~~~v~i~G~pnvGKStliN~l~~  190 (352)
                      +..|+++|.||+||||+.+.|.+
T Consensus         4 ~~~i~l~G~~GsGKSTl~~~La~   26 (173)
T 1kag_A            4 KRNIFLVGPMGAGKSTIGRQLAQ   26 (173)
T ss_dssp             CCCEEEECCTTSCHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHH
Confidence            34699999999999999999985

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=94.71  E-value=0.017  Score=48.98  Aligned_cols=24  Identities=29%  Similarity=0.447  Sum_probs=21.4

Q ss_pred             cceEEEEeCCCCCChHHHHHHHhC
Q psy15351        167 YNTTVMVVGVPNVGKSSIINALRS  190 (352)
Q Consensus       167 ~~~~v~i~G~pnvGKStliN~l~~  190 (352)
                      .+..++++|.||+||||+.+.|..
T Consensus        11 ~~~~i~l~G~sGsGKsTl~~~L~~   34 (204)
T 2qor_A           11 RIPPLVVCGPSGVGKGTLIKKVLS   34 (204)
T ss_dssp             CCCCEEEECCTTSCHHHHHHHHHH
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHH
Confidence            456799999999999999999975

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=94.69  E-value=0.017  Score=49.22  Aligned_cols=24  Identities=33%  Similarity=0.592  Sum_probs=21.3

Q ss_pred             cceEEEEeCCCCCChHHHHHHHhC
Q psy15351        167 YNTTVMVVGVPNVGKSSIINALRS  190 (352)
Q Consensus       167 ~~~~v~i~G~pnvGKStliN~l~~  190 (352)
                      ++-.++++|.+|+|||||++.|.+
T Consensus        19 ~Gei~~l~GpnGsGKSTLl~~l~g   42 (207)
T 1znw_A           19 VGRVVVLSGPSAVGKSTVVRCLRE   42 (207)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHh
Confidence            445689999999999999999986

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=94.68  E-value=0.015  Score=50.14  Aligned_cols=24  Identities=25%  Similarity=0.433  Sum_probs=21.6

Q ss_pred             cceEEEEeCCCCCChHHHHHHHhC
Q psy15351        167 YNTTVMVVGVPNVGKSSIINALRS  190 (352)
Q Consensus       167 ~~~~v~i~G~pnvGKStliN~l~~  190 (352)
                      ++-.++++|.+|+|||||++.|.+
T Consensus        22 ~G~~~~lvGpsGsGKSTLl~~L~g   45 (218)
T 1z6g_A           22 NIYPLVICGPSGVGKGTLIKKLLN   45 (218)
T ss_dssp             CCCCEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHh
Confidence            455799999999999999999986

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=94.66  E-value=0.022  Score=46.83  Aligned_cols=22  Identities=23%  Similarity=0.516  Sum_probs=19.9

Q ss_pred             eEEEEeCCCCCChHHHHHHHhC
Q psy15351        169 TTVMVVGVPNVGKSSIINALRS  190 (352)
Q Consensus       169 ~~v~i~G~pnvGKStliN~l~~  190 (352)
                      ..|.++|.||+||||+.+.|..
T Consensus         3 ~~I~i~G~~GsGKST~a~~L~~   24 (181)
T 1ly1_A            3 KIILTIGCPGSGKSTWAREFIA   24 (181)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEecCCCCCHHHHHHHHHh
Confidence            5689999999999999999974

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=94.54  E-value=0.018  Score=49.01  Aligned_cols=24  Identities=21%  Similarity=0.290  Sum_probs=21.6

Q ss_pred             cceEEEEeCCCCCChHHHHHHHhC
Q psy15351        167 YNTTVMVVGVPNVGKSSIINALRS  190 (352)
Q Consensus       167 ~~~~v~i~G~pnvGKStliN~l~~  190 (352)
                      ++..++++|.+|+|||||++.|.+
T Consensus         5 ~~~~i~i~G~~GsGKSTl~~~l~~   28 (211)
T 3asz_A            5 KPFVIGIAGGTASGKTTLAQALAR   28 (211)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHH
Confidence            456799999999999999999986

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=94.54  E-value=0.02  Score=49.53  Aligned_cols=25  Identities=36%  Similarity=0.393  Sum_probs=22.0

Q ss_pred             CcceEEEEeCCCCCChHHHHHHHhC
Q psy15351        166 VYNTTVMVVGVPNVGKSSIINALRS  190 (352)
Q Consensus       166 ~~~~~v~i~G~pnvGKStliN~l~~  190 (352)
                      +++-.++++|.+|+|||||++.|.+
T Consensus        14 ~~G~ii~l~GpsGsGKSTLlk~L~g   38 (219)
T 1s96_A           14 AQGTLYIVSAPSGAGKSSLIQALLK   38 (219)
T ss_dssp             -CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhc
Confidence            4566799999999999999999986

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=94.47  E-value=0.021  Score=48.25  Aligned_cols=24  Identities=29%  Similarity=0.502  Sum_probs=21.3

Q ss_pred             cceEEEEeCCCCCChHHHHHHHhC
Q psy15351        167 YNTTVMVVGVPNVGKSSIINALRS  190 (352)
Q Consensus       167 ~~~~v~i~G~pnvGKStliN~l~~  190 (352)
                      ++..++++|.+|+||||+++.|.+
T Consensus        28 ~g~~i~l~G~~GsGKSTl~~~L~~   51 (200)
T 4eun_A           28 PTRHVVVMGVSGSGKTTIAHGVAD   51 (200)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            456799999999999999999975

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=94.28  E-value=0.026  Score=45.89  Aligned_cols=20  Identities=30%  Similarity=0.672  Sum_probs=18.5

Q ss_pred             eEEEEeCCCCCChHHHHHHH
Q psy15351        169 TTVMVVGVPNVGKSSIINAL  188 (352)
Q Consensus       169 ~~v~i~G~pnvGKStliN~l  188 (352)
                      +.|+++|.||+||||+.+.|
T Consensus         2 ~~I~l~G~~GsGKsT~a~~L   21 (179)
T 3lw7_A            2 KVILITGMPGSGKSEFAKLL   21 (179)
T ss_dssp             CEEEEECCTTSCHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHH
Confidence            45899999999999999999

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=94.18  E-value=0.036  Score=45.50  Aligned_cols=24  Identities=21%  Similarity=0.397  Sum_probs=21.0

Q ss_pred             cceEEEEeCCCCCChHHHHHHHhC
Q psy15351        167 YNTTVMVVGVPNVGKSSIINALRS  190 (352)
Q Consensus       167 ~~~~v~i~G~pnvGKStliN~l~~  190 (352)
                      .+..++++|.||+||||+.+.|.+
T Consensus         7 ~g~~i~l~G~~GsGKSTl~~~l~~   30 (175)
T 1knq_A            7 DHHIYVLMGVSGSGKSAVASEVAH   30 (175)
T ss_dssp             TSEEEEEECSTTSCHHHHHHHHHH
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHH
Confidence            346799999999999999999874

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=94.18  E-value=0.03  Score=48.98  Aligned_cols=22  Identities=18%  Similarity=0.454  Sum_probs=20.6

Q ss_pred             ceEEEEeCCCCCChHHHHHHHh
Q psy15351        168 NTTVMVVGVPNVGKSSIINALR  189 (352)
Q Consensus       168 ~~~v~i~G~pnvGKStliN~l~  189 (352)
                      +..++++|.||+||||+++.|.
T Consensus        27 ~~~i~l~G~~GsGKSTl~k~La   48 (246)
T 2bbw_A           27 LLRAVILGPPGSGKGTVCQRIA   48 (246)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHH
Confidence            4679999999999999999998

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=94.14  E-value=0.031  Score=46.31  Aligned_cols=23  Identities=26%  Similarity=0.502  Sum_probs=20.6

Q ss_pred             ceEEEEeCCCCCChHHHHHHHhC
Q psy15351        168 NTTVMVVGVPNVGKSSIINALRS  190 (352)
Q Consensus       168 ~~~v~i~G~pnvGKStliN~l~~  190 (352)
                      +..|+++|.||+||||+.+.|..
T Consensus         4 g~~I~l~G~~GsGKST~~~~La~   26 (186)
T 3cm0_A            4 GQAVIFLGPPGAGKGTQASRLAQ   26 (186)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            46799999999999999999973

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=94.10  E-value=0.032  Score=47.22  Aligned_cols=24  Identities=21%  Similarity=0.248  Sum_probs=21.5

Q ss_pred             cceEEEEeCCCCCChHHHHHHHhC
Q psy15351        167 YNTTVMVVGVPNVGKSSIINALRS  190 (352)
Q Consensus       167 ~~~~v~i~G~pnvGKStliN~l~~  190 (352)
                      ++..|++.|.||+||||+.+.|..
T Consensus         9 ~~~~I~l~G~~GsGKST~~~~L~~   32 (212)
T 2wwf_A            9 KGKFIVFEGLDRSGKSTQSKLLVE   32 (212)
T ss_dssp             CSCEEEEEESTTSSHHHHHHHHHH
T ss_pred             cCCEEEEEcCCCCCHHHHHHHHHH
Confidence            467899999999999999999974

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=94.08  E-value=0.036  Score=46.96  Aligned_cols=26  Identities=23%  Similarity=0.377  Sum_probs=23.1

Q ss_pred             cCcceEEEEeCCCCCChHHHHHHHhC
Q psy15351        165 EVYNTTVMVVGVPNVGKSSIINALRS  190 (352)
Q Consensus       165 ~~~~~~v~i~G~pnvGKStliN~l~~  190 (352)
                      .+++..|+++|.+|+||||+.+.|.+
T Consensus        18 ~~~~~~i~i~G~~GsGKSTl~~~L~~   43 (207)
T 2qt1_A           18 GSKTFIIGISGVTNSGKTTLAKNLQK   43 (207)
T ss_dssp             SCCCEEEEEEESTTSSHHHHHHHHHT
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            34567899999999999999999986

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=94.06  E-value=0.031  Score=46.49  Aligned_cols=24  Identities=29%  Similarity=0.545  Sum_probs=21.1

Q ss_pred             cceEEEEeCCCCCChHHHHHHHhC
Q psy15351        167 YNTTVMVVGVPNVGKSSIINALRS  190 (352)
Q Consensus       167 ~~~~v~i~G~pnvGKStliN~l~~  190 (352)
                      ++..|.++|.||+||||+.+.|..
T Consensus         4 ~~~~I~l~G~~GsGKST~~~~L~~   27 (193)
T 2rhm_A            4 TPALIIVTGHPATGKTTLSQALAT   27 (193)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            456799999999999999999974

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=94.02  E-value=0.027  Score=48.84  Aligned_cols=24  Identities=25%  Similarity=0.397  Sum_probs=21.3

Q ss_pred             cceEEEEeCCCCCChHHHHHHHhC
Q psy15351        167 YNTTVMVVGVPNVGKSSIINALRS  190 (352)
Q Consensus       167 ~~~~v~i~G~pnvGKStliN~l~~  190 (352)
                      ++-.++++|.+|+|||||++.|.+
T Consensus        29 ~Ge~~~iiG~nGsGKSTLl~~l~G   52 (224)
T 2pcj_A           29 KGEFVSIIGASGSGKSTLLYILGL   52 (224)
T ss_dssp             TTCEEEEEECTTSCHHHHHHHHTT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhc
Confidence            345689999999999999999987

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=94.01  E-value=0.032  Score=46.45  Aligned_cols=21  Identities=29%  Similarity=0.455  Sum_probs=19.2

Q ss_pred             EEEEeCCCCCChHHHHHHHhC
Q psy15351        170 TVMVVGVPNVGKSSIINALRS  190 (352)
Q Consensus       170 ~v~i~G~pnvGKStliN~l~~  190 (352)
                      .++++|.+|+||||+++.|.+
T Consensus         4 ii~l~G~~GaGKSTl~~~L~~   24 (189)
T 2bdt_A            4 LYIITGPAGVGKSTTCKRLAA   24 (189)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHhc
Confidence            578999999999999999974

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=94.00  E-value=0.033  Score=48.65  Aligned_cols=25  Identities=24%  Similarity=0.384  Sum_probs=22.0

Q ss_pred             CcceEEEEeCCCCCChHHHHHHHhC
Q psy15351        166 VYNTTVMVVGVPNVGKSSIINALRS  190 (352)
Q Consensus       166 ~~~~~v~i~G~pnvGKStliN~l~~  190 (352)
                      .++=.++++|..|+|||||++.|.+
T Consensus        29 ~~Ge~~~iiG~nGsGKSTLl~~l~G   53 (235)
T 3tif_A           29 KEGEFVSIMGPSGSGKSTMLNIIGC   53 (235)
T ss_dssp             CTTCEEEEECSTTSSHHHHHHHHTT
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHhc
Confidence            3455799999999999999999987

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=93.97  E-value=0.034  Score=50.78  Aligned_cols=25  Identities=28%  Similarity=0.301  Sum_probs=22.7

Q ss_pred             CcceEEEEeCCCCCChHHHHHHHhC
Q psy15351        166 VYNTTVMVVGVPNVGKSSIINALRS  190 (352)
Q Consensus       166 ~~~~~v~i~G~pnvGKStliN~l~~  190 (352)
                      ..+..++|+|.+|+|||||++.|.+
T Consensus        88 ~~g~ivgI~G~sGsGKSTL~~~L~g  112 (312)
T 3aez_A           88 PVPFIIGVAGSVAVGKSTTARVLQA  112 (312)
T ss_dssp             CCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCchHHHHHHHHHh
Confidence            4678899999999999999999986

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=93.96  E-value=0.039  Score=45.93  Aligned_cols=24  Identities=21%  Similarity=0.563  Sum_probs=21.5

Q ss_pred             cceEEEEeCCCCCChHHHHHHHhC
Q psy15351        167 YNTTVMVVGVPNVGKSSIINALRS  190 (352)
Q Consensus       167 ~~~~v~i~G~pnvGKStliN~l~~  190 (352)
                      .+..|+++|.||+||||+.+.|..
T Consensus         9 ~~~~I~l~G~~GsGKSTv~~~La~   32 (184)
T 1y63_A            9 KGINILITGTPGTGKTSMAEMIAA   32 (184)
T ss_dssp             SSCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHH
Confidence            456899999999999999999974

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=93.95  E-value=0.038  Score=46.70  Aligned_cols=22  Identities=27%  Similarity=0.308  Sum_probs=20.2

Q ss_pred             eEEEEeCCCCCChHHHHHHHhC
Q psy15351        169 TTVMVVGVPNVGKSSIINALRS  190 (352)
Q Consensus       169 ~~v~i~G~pnvGKStliN~l~~  190 (352)
                      +.|+++|.+|+||||+.+.|.+
T Consensus         3 ~~i~l~G~~GsGKST~~~~La~   24 (206)
T 1jjv_A            3 YIVGLTGGIGSGKTTIANLFTD   24 (206)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHT
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            4699999999999999999985

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=93.95  E-value=0.032  Score=45.36  Aligned_cols=21  Identities=19%  Similarity=0.219  Sum_probs=19.2

Q ss_pred             EEEEeCCCCCChHHHHHHHhC
Q psy15351        170 TVMVVGVPNVGKSSIINALRS  190 (352)
Q Consensus       170 ~v~i~G~pnvGKStliN~l~~  190 (352)
                      .|+++|.||+||||+.+.|..
T Consensus         3 ~i~l~G~~GsGKsT~~~~L~~   23 (173)
T 3kb2_A            3 LIILEGPDCCFKSTVAAKLSK   23 (173)
T ss_dssp             EEEEECSSSSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999999974

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=93.93  E-value=0.035  Score=45.70  Aligned_cols=23  Identities=22%  Similarity=0.274  Sum_probs=19.8

Q ss_pred             cceEEEEeCCCCCChHHHHHHHh
Q psy15351        167 YNTTVMVVGVPNVGKSSIINALR  189 (352)
Q Consensus       167 ~~~~v~i~G~pnvGKStliN~l~  189 (352)
                      ++-.++++|.+|+|||||++.+.
T Consensus         8 ~gei~~l~G~nGsGKSTl~~~~~   30 (171)
T 4gp7_A            8 ELSLVVLIGSSGSGKSTFAKKHF   30 (171)
T ss_dssp             SSEEEEEECCTTSCHHHHHHHHS
T ss_pred             CCEEEEEECCCCCCHHHHHHHHc
Confidence            44568999999999999999765

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=93.91  E-value=0.034  Score=46.92  Aligned_cols=25  Identities=28%  Similarity=0.409  Sum_probs=22.2

Q ss_pred             CcceEEEEeCCCCCChHHHHHHHhC
Q psy15351        166 VYNTTVMVVGVPNVGKSSIINALRS  190 (352)
Q Consensus       166 ~~~~~v~i~G~pnvGKStliN~l~~  190 (352)
                      .++..|+++|.+|+||||+.+.|.+
T Consensus        23 ~~g~~i~l~G~sGsGKSTl~~~La~   47 (200)
T 3uie_A           23 QKGCVIWVTGLSGSGKSTLACALNQ   47 (200)
T ss_dssp             SCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            4567899999999999999999985

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=93.91  E-value=0.034  Score=48.79  Aligned_cols=23  Identities=17%  Similarity=0.349  Sum_probs=20.7

Q ss_pred             eEEEEeCCCCCChHHHHHHHhCC
Q psy15351        169 TTVMVVGVPNVGKSSIINALRSS  191 (352)
Q Consensus       169 ~~v~i~G~pnvGKStliN~l~~~  191 (352)
                      =.++++|.+|+|||||++.|.+.
T Consensus        25 e~~~liG~nGsGKSTLl~~l~Gl   47 (240)
T 2onk_A           25 DYCVLLGPTGAGKSVFLELIAGI   47 (240)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHTS
T ss_pred             EEEEEECCCCCCHHHHHHHHhCC
Confidence            45899999999999999999973

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=93.91  E-value=0.041  Score=46.38  Aligned_cols=25  Identities=24%  Similarity=0.373  Sum_probs=22.1

Q ss_pred             CcceEEEEeCCCCCChHHHHHHHhC
Q psy15351        166 VYNTTVMVVGVPNVGKSSIINALRS  190 (352)
Q Consensus       166 ~~~~~v~i~G~pnvGKStliN~l~~  190 (352)
                      ..++.|+++|.||+||||+.+.|..
T Consensus        18 ~~~~~I~l~G~~GsGKST~a~~La~   42 (201)
T 2cdn_A           18 GSHMRVLLLGPPGAGKGTQAVKLAE   42 (201)
T ss_dssp             CSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            4567899999999999999999974

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=93.90  E-value=0.036  Score=45.92  Aligned_cols=22  Identities=32%  Similarity=0.502  Sum_probs=20.0

Q ss_pred             eEEEEeCCCCCChHHHHHHHhC
Q psy15351        169 TTVMVVGVPNVGKSSIINALRS  190 (352)
Q Consensus       169 ~~v~i~G~pnvGKStliN~l~~  190 (352)
                      ..|.+.|.||+||||+.+.|..
T Consensus         4 ~~I~i~G~~GsGKsT~~~~L~~   25 (192)
T 1kht_A            4 KVVVVTGVPGVGSTTSSQLAMD   25 (192)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999999974

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=93.89  E-value=0.03  Score=50.98  Aligned_cols=25  Identities=32%  Similarity=0.481  Sum_probs=22.4

Q ss_pred             CcceEEEEeCCCCCChHHHHHHHhC
Q psy15351        166 VYNTTVMVVGVPNVGKSSIINALRS  190 (352)
Q Consensus       166 ~~~~~v~i~G~pnvGKStliN~l~~  190 (352)
                      +++-.++|+|.+|+|||||++.|.+
T Consensus       124 ~~Ge~vaIvGpsGsGKSTLl~lL~g  148 (305)
T 2v9p_A          124 PKKNCLAFIGPPNTGKSMLCNSLIH  148 (305)
T ss_dssp             TTCSEEEEECSSSSSHHHHHHHHHH
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHhh
Confidence            4566799999999999999999986

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=93.88  E-value=0.038  Score=45.40  Aligned_cols=22  Identities=32%  Similarity=0.563  Sum_probs=19.9

Q ss_pred             eEEEEeCCCCCChHHHHHHHhC
Q psy15351        169 TTVMVVGVPNVGKSSIINALRS  190 (352)
Q Consensus       169 ~~v~i~G~pnvGKStliN~l~~  190 (352)
                      ..|.++|.||+||||+.+.|..
T Consensus         4 ~~i~l~G~~GsGKST~a~~La~   25 (178)
T 1qhx_A            4 RMIILNGGSSAGKSGIVRCLQS   25 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999999974

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=93.83  E-value=0.037  Score=48.40  Aligned_cols=24  Identities=42%  Similarity=0.504  Sum_probs=21.6

Q ss_pred             cceEEEEeCCCCCChHHHHHHHhC
Q psy15351        167 YNTTVMVVGVPNVGKSSIINALRS  190 (352)
Q Consensus       167 ~~~~v~i~G~pnvGKStliN~l~~  190 (352)
                      ++-.++++|.+|+|||||++.|.+
T Consensus        30 ~Ge~~~i~G~nGsGKSTLl~~l~G   53 (237)
T 2cbz_A           30 EGALVAVVGQVGCGKSSLLSALLA   53 (237)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhc
Confidence            455799999999999999999986

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=93.81  E-value=0.029  Score=47.31  Aligned_cols=21  Identities=33%  Similarity=0.665  Sum_probs=19.5

Q ss_pred             EEEEeCCCCCChHHHHHHHhC
Q psy15351        170 TVMVVGVPNVGKSSIINALRS  190 (352)
Q Consensus       170 ~v~i~G~pnvGKStliN~l~~  190 (352)
                      .++++|.+|+|||||++.|.+
T Consensus         3 ~i~i~G~nG~GKTTll~~l~g   23 (189)
T 2i3b_A            3 HVFLTGPPGVGKTTLIHKASE   23 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHH
T ss_pred             EEEEECCCCChHHHHHHHHHh
Confidence            489999999999999999986

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=93.78  E-value=0.037  Score=46.67  Aligned_cols=23  Identities=35%  Similarity=0.544  Sum_probs=20.7

Q ss_pred             ceEEEEeCCCCCChHHHHHHHhC
Q psy15351        168 NTTVMVVGVPNVGKSSIINALRS  190 (352)
Q Consensus       168 ~~~v~i~G~pnvGKStliN~l~~  190 (352)
                      ...|+++|.||+||||+.+.|..
T Consensus        18 ~~~I~l~G~~GsGKSTla~~L~~   40 (202)
T 3t61_A           18 PGSIVVMGVSGSGKSSVGEAIAE   40 (202)
T ss_dssp             SSCEEEECSTTSCHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            45799999999999999999974

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=93.76  E-value=0.033  Score=47.93  Aligned_cols=24  Identities=17%  Similarity=0.410  Sum_probs=21.1

Q ss_pred             cceEEEEeCCCCCChHHHHHHHhC
Q psy15351        167 YNTTVMVVGVPNVGKSSIINALRS  190 (352)
Q Consensus       167 ~~~~v~i~G~pnvGKStliN~l~~  190 (352)
                      ++-.++++|..|+|||||++.|.+
T Consensus        34 ~Ge~~~iiG~NGsGKSTLlk~l~G   57 (214)
T 1sgw_A           34 KGNVVNFHGPNGIGKTTLLKTIST   57 (214)
T ss_dssp             TTCCEEEECCTTSSHHHHHHHHTT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhc
Confidence            344689999999999999999987

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=93.74  E-value=0.038  Score=46.30  Aligned_cols=21  Identities=24%  Similarity=0.463  Sum_probs=19.3

Q ss_pred             EEEEeCCCCCChHHHHHHHhC
Q psy15351        170 TVMVVGVPNVGKSSIINALRS  190 (352)
Q Consensus       170 ~v~i~G~pnvGKStliN~l~~  190 (352)
                      .|+++|.||+||||+.+.|..
T Consensus         2 ~I~i~G~~GsGKsT~~~~L~~   22 (205)
T 2jaq_A            2 KIAIFGTVGAGKSTISAEISK   22 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCccCHHHHHHHHHH
Confidence            589999999999999999974

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=93.73  E-value=0.042  Score=48.20  Aligned_cols=26  Identities=27%  Similarity=0.317  Sum_probs=22.6

Q ss_pred             CcceEEEEeCCCCCChHHHHHHHhCC
Q psy15351        166 VYNTTVMVVGVPNVGKSSIINALRSS  191 (352)
Q Consensus       166 ~~~~~v~i~G~pnvGKStliN~l~~~  191 (352)
                      +++-.++++|.+|+|||||++.|.+.
T Consensus        26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl   51 (243)
T 1mv5_A           26 QPNSIIAFAGPSGGGKSTIFSLLERF   51 (243)
T ss_dssp             CTTEEEEEECCTTSSHHHHHHHHTTS
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcC
Confidence            34567999999999999999999973

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=93.71  E-value=0.043  Score=46.29  Aligned_cols=23  Identities=26%  Similarity=0.380  Sum_probs=20.7

Q ss_pred             ceEEEEeCCCCCChHHHHHHHhC
Q psy15351        168 NTTVMVVGVPNVGKSSIINALRS  190 (352)
Q Consensus       168 ~~~v~i~G~pnvGKStliN~l~~  190 (352)
                      +..|++.|.||+||||+.+.|..
T Consensus         4 ~~~I~i~G~~GsGKsT~~~~L~~   26 (213)
T 2plr_A            4 GVLIAFEGIDGSGKSSQATLLKD   26 (213)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHH
Confidence            46799999999999999999974

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=93.71  E-value=0.039  Score=47.27  Aligned_cols=23  Identities=17%  Similarity=0.395  Sum_probs=20.6

Q ss_pred             ceEEEEeCCCCCChHHHHHHHhC
Q psy15351        168 NTTVMVVGVPNVGKSSIINALRS  190 (352)
Q Consensus       168 ~~~v~i~G~pnvGKStliN~l~~  190 (352)
                      ...|+++|.+|+||||+.+.|.+
T Consensus         5 ~~~i~i~G~~GsGKSTl~~~L~~   27 (227)
T 1cke_A            5 APVITIDGPSGAGKGTLCKAMAE   27 (227)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999999975

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=93.70  E-value=0.037  Score=49.31  Aligned_cols=25  Identities=24%  Similarity=0.422  Sum_probs=21.9

Q ss_pred             cceEEEEeCCCCCChHHHHHHHhCC
Q psy15351        167 YNTTVMVVGVPNVGKSSIINALRSS  191 (352)
Q Consensus       167 ~~~~v~i~G~pnvGKStliN~l~~~  191 (352)
                      ++=.++++|.+|+|||||++.|.+.
T Consensus        36 ~Ge~~~liG~nGsGKSTLl~~l~Gl   60 (266)
T 4g1u_C           36 SGEMVAIIGPNGAGKSTLLRLLTGY   60 (266)
T ss_dssp             TTCEEEEECCTTSCHHHHHHHHTSS
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhcC
Confidence            4556899999999999999999973

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=93.68  E-value=0.036  Score=49.64  Aligned_cols=24  Identities=21%  Similarity=0.408  Sum_probs=21.5

Q ss_pred             cceEEEEeCCCCCChHHHHHHHhC
Q psy15351        167 YNTTVMVVGVPNVGKSSIINALRS  190 (352)
Q Consensus       167 ~~~~v~i~G~pnvGKStliN~l~~  190 (352)
                      ++=.++++|.+|+|||||++.|.+
T Consensus        33 ~Ge~~~iiGpnGsGKSTLl~~l~G   56 (275)
T 3gfo_A           33 RGEVTAILGGNGVGKSTLFQNFNG   56 (275)
T ss_dssp             TTSEEEEECCTTSSHHHHHHHHTT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHc
Confidence            445689999999999999999987

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=93.68  E-value=0.045  Score=45.50  Aligned_cols=22  Identities=14%  Similarity=0.299  Sum_probs=20.0

Q ss_pred             eEEEEeCCCCCChHHHHHHHhC
Q psy15351        169 TTVMVVGVPNVGKSSIINALRS  190 (352)
Q Consensus       169 ~~v~i~G~pnvGKStliN~l~~  190 (352)
                      ..++++|.+|+|||||++.|.+
T Consensus         7 ~~i~i~G~sGsGKTTl~~~l~~   28 (174)
T 1np6_A            7 PLLAFAAWSGTGKTTLLKKLIP   28 (174)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEEEeCCCCCHHHHHHHHHH
Confidence            4689999999999999999985

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=93.65  E-value=0.042  Score=47.04  Aligned_cols=24  Identities=21%  Similarity=0.444  Sum_probs=21.2

Q ss_pred             cceEEEEeCCCCCChHHHHHHHhC
Q psy15351        167 YNTTVMVVGVPNVGKSSIINALRS  190 (352)
Q Consensus       167 ~~~~v~i~G~pnvGKStliN~l~~  190 (352)
                      +++.|+++|.||+||||+.+.|..
T Consensus         3 ~~~~I~l~G~~GsGKsT~a~~La~   26 (220)
T 1aky_A            3 ESIRMVLIGPPGAGKGTQAPNLQE   26 (220)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            457899999999999999999864

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=93.65  E-value=0.044  Score=46.20  Aligned_cols=24  Identities=17%  Similarity=0.293  Sum_probs=21.1

Q ss_pred             cceEEEEeCCCCCChHHHHHHHhC
Q psy15351        167 YNTTVMVVGVPNVGKSSIINALRS  190 (352)
Q Consensus       167 ~~~~v~i~G~pnvGKStliN~l~~  190 (352)
                      ++..|+++|.||+||||+...|..
T Consensus        24 ~~~~i~l~G~~GsGKsTl~~~La~   47 (199)
T 3vaa_A           24 AMVRIFLTGYMGAGKTTLGKAFAR   47 (199)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHHH
Confidence            456799999999999999999974

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=93.60  E-value=0.028  Score=48.59  Aligned_cols=24  Identities=17%  Similarity=0.317  Sum_probs=16.9

Q ss_pred             cceEEEEeCCCCCChHHHHHHHh-C
Q psy15351        167 YNTTVMVVGVPNVGKSSIINALR-S  190 (352)
Q Consensus       167 ~~~~v~i~G~pnvGKStliN~l~-~  190 (352)
                      ++-.++++|.+|+||||+++.|. +
T Consensus        26 ~G~ii~l~Gp~GsGKSTl~~~L~~~   50 (231)
T 3lnc_A           26 VGVILVLSSPSGCGKTTVANKLLEK   50 (231)
T ss_dssp             CCCEEEEECSCC----CHHHHHHC-
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhc
Confidence            45679999999999999999998 6

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=93.60  E-value=0.043  Score=48.76  Aligned_cols=24  Identities=17%  Similarity=0.416  Sum_probs=21.6

Q ss_pred             cceEEEEeCCCCCChHHHHHHHhC
Q psy15351        167 YNTTVMVVGVPNVGKSSIINALRS  190 (352)
Q Consensus       167 ~~~~v~i~G~pnvGKStliN~l~~  190 (352)
                      .+-.++++|.+|+|||||++.|.+
T Consensus        31 ~Ge~~~liG~nGsGKSTLlk~l~G   54 (262)
T 1b0u_A           31 AGDVISIIGSSGSGKSTFLRCINF   54 (262)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHTT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhc
Confidence            455689999999999999999997

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=93.57  E-value=0.036  Score=46.71  Aligned_cols=22  Identities=23%  Similarity=0.398  Sum_probs=20.0

Q ss_pred             eEEEEeCCCCCChHHHHHHHhC
Q psy15351        169 TTVMVVGVPNVGKSSIINALRS  190 (352)
Q Consensus       169 ~~v~i~G~pnvGKStliN~l~~  190 (352)
                      +.|+++|.+|+||||+.+.|.+
T Consensus         2 ~~i~i~G~~GsGKSTl~~~L~~   23 (204)
T 2if2_A            2 KRIGLTGNIGCGKSTVAQMFRE   23 (204)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHH
Confidence            3699999999999999999985

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=93.55  E-value=0.041  Score=48.46  Aligned_cols=24  Identities=21%  Similarity=0.264  Sum_probs=21.5

Q ss_pred             cceEEEEeCCCCCChHHHHHHHhC
Q psy15351        167 YNTTVMVVGVPNVGKSSIINALRS  190 (352)
Q Consensus       167 ~~~~v~i~G~pnvGKStliN~l~~  190 (352)
                      ++-.++++|..|+|||||++.|.+
T Consensus        28 ~Ge~~~l~G~nGsGKSTLlk~l~G   51 (250)
T 2d2e_A           28 KGEVHALMGPNGAGKSTLGKILAG   51 (250)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHHT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhC
Confidence            345689999999999999999997

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=93.51  E-value=0.048  Score=45.27  Aligned_cols=23  Identities=26%  Similarity=0.410  Sum_probs=20.4

Q ss_pred             ceEEEEeCCCCCChHHHHHHHhC
Q psy15351        168 NTTVMVVGVPNVGKSSIINALRS  190 (352)
Q Consensus       168 ~~~v~i~G~pnvGKStliN~l~~  190 (352)
                      +..|+++|.||+||||+.+.|..
T Consensus         3 ~~~I~l~G~~GsGKsT~a~~L~~   25 (196)
T 1tev_A            3 PLVVFVLGGPGAGKGTQCARIVE   25 (196)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            46799999999999999998863

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=93.49  E-value=0.047  Score=45.84  Aligned_cols=23  Identities=13%  Similarity=0.273  Sum_probs=21.1

Q ss_pred             ceEEEEeCCCCCChHHHHHHHhC
Q psy15351        168 NTTVMVVGVPNVGKSSIINALRS  190 (352)
Q Consensus       168 ~~~v~i~G~pnvGKStliN~l~~  190 (352)
                      +..|++.|.||+||||+.+.|..
T Consensus         4 ~~~I~l~G~~GsGKsT~~~~L~~   26 (204)
T 2v54_A            4 GALIVFEGLDKSGKTTQCMNIME   26 (204)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHH
Confidence            56799999999999999999985

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=93.49  E-value=0.059  Score=44.74  Aligned_cols=25  Identities=28%  Similarity=0.470  Sum_probs=21.9

Q ss_pred             CcceEEEEeCCCCCChHHHHHHHhC
Q psy15351        166 VYNTTVMVVGVPNVGKSSIINALRS  190 (352)
Q Consensus       166 ~~~~~v~i~G~pnvGKStliN~l~~  190 (352)
                      .++..|+++|.||+||||+.+.|..
T Consensus        11 ~~~~~i~l~G~~GsGKsT~~~~L~~   35 (186)
T 2yvu_A           11 EKGIVVWLTGLPGSGKTTIATRLAD   35 (186)
T ss_dssp             SCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCcEEEEEcCCCCCHHHHHHHHHH
Confidence            3567899999999999999999974

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=93.48  E-value=0.042  Score=45.55  Aligned_cols=21  Identities=33%  Similarity=0.738  Sum_probs=19.3

Q ss_pred             EEEEeCCCCCChHHHHHHHhC
Q psy15351        170 TVMVVGVPNVGKSSIINALRS  190 (352)
Q Consensus       170 ~v~i~G~pnvGKStliN~l~~  190 (352)
                      .|.+.|.||+||||+.+.|..
T Consensus         3 ~I~i~G~~GsGKsT~~~~L~~   23 (194)
T 1nks_A            3 IGIVTGIPGVGKSTVLAKVKE   23 (194)
T ss_dssp             EEEEEECTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999999974

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=93.47  E-value=0.042  Score=48.45  Aligned_cols=24  Identities=21%  Similarity=0.396  Sum_probs=21.4

Q ss_pred             cceEEEEeCCCCCChHHHHHHHhC
Q psy15351        167 YNTTVMVVGVPNVGKSSIINALRS  190 (352)
Q Consensus       167 ~~~~v~i~G~pnvGKStliN~l~~  190 (352)
                      ++-.++++|..|+|||||++.|.+
T Consensus        25 ~Ge~~~liG~NGsGKSTLlk~l~G   48 (249)
T 2qi9_C           25 AGEILHLVGPNGAGKSTLLARMAG   48 (249)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHTT
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhC
Confidence            345689999999999999999997

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=93.46  E-value=0.041  Score=48.68  Aligned_cols=24  Identities=25%  Similarity=0.526  Sum_probs=21.5

Q ss_pred             cceEEEEeCCCCCChHHHHHHHhC
Q psy15351        167 YNTTVMVVGVPNVGKSSIINALRS  190 (352)
Q Consensus       167 ~~~~v~i~G~pnvGKStliN~l~~  190 (352)
                      .+-.++++|..|+|||||++.|.+
T Consensus        32 ~Ge~~~liG~nGsGKSTLlk~l~G   55 (257)
T 1g6h_A           32 KGDVTLIIGPNGSGKSTLINVITG   55 (257)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhC
Confidence            445789999999999999999987

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=93.44  E-value=0.047  Score=48.55  Aligned_cols=24  Identities=29%  Similarity=0.473  Sum_probs=21.6

Q ss_pred             cceEEEEeCCCCCChHHHHHHHhC
Q psy15351        167 YNTTVMVVGVPNVGKSSIINALRS  190 (352)
Q Consensus       167 ~~~~v~i~G~pnvGKStliN~l~~  190 (352)
                      ++-.++++|..|+|||||++.|.+
T Consensus        49 ~Gei~~liG~NGsGKSTLlk~l~G   72 (263)
T 2olj_A           49 EGEVVVVIGPSGSGKSTFLRCLNL   72 (263)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHTT
T ss_pred             CCCEEEEEcCCCCcHHHHHHHHHc
Confidence            455789999999999999999997

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=93.44  E-value=0.042  Score=48.35  Aligned_cols=25  Identities=20%  Similarity=0.344  Sum_probs=21.9

Q ss_pred             cceEEEEeCCCCCChHHHHHHHhCC
Q psy15351        167 YNTTVMVVGVPNVGKSSIINALRSS  191 (352)
Q Consensus       167 ~~~~v~i~G~pnvGKStliN~l~~~  191 (352)
                      ++-.++++|.+|+|||||++.|.+.
T Consensus        34 ~Ge~~~i~G~nGsGKSTLl~~l~Gl   58 (247)
T 2ff7_A           34 QGEVIGIVGRSGSGKSTLTKLIQRF   58 (247)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcC
Confidence            4457999999999999999999873

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=93.44  E-value=0.045  Score=48.58  Aligned_cols=24  Identities=25%  Similarity=0.356  Sum_probs=21.4

Q ss_pred             cceEEEEeCCCCCChHHHHHHHhC
Q psy15351        167 YNTTVMVVGVPNVGKSSIINALRS  190 (352)
Q Consensus       167 ~~~~v~i~G~pnvGKStliN~l~~  190 (352)
                      ++-.++++|.+|+||||+++.|.+
T Consensus        24 ~g~~v~i~Gp~GsGKSTll~~l~g   47 (261)
T 2eyu_A           24 KMGLILVTGPTGSGKSTTIASMID   47 (261)
T ss_dssp             SSEEEEEECSTTCSHHHHHHHHHH
T ss_pred             CCCEEEEECCCCccHHHHHHHHHH
Confidence            455799999999999999999986

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=93.44  E-value=0.044  Score=46.64  Aligned_cols=22  Identities=18%  Similarity=0.528  Sum_probs=19.5

Q ss_pred             eEEEEeCCCCCChHHHHHHHhC
Q psy15351        169 TTVMVVGVPNVGKSSIINALRS  190 (352)
Q Consensus       169 ~~v~i~G~pnvGKStliN~l~~  190 (352)
                      ++|++.|.||+||||+.+.|..
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~   22 (216)
T 3fb4_A            1 MNIVLMGLPGAGKGTQAEQIIE   22 (216)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3689999999999999999963

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=93.40  E-value=0.048  Score=48.40  Aligned_cols=25  Identities=36%  Similarity=0.383  Sum_probs=22.1

Q ss_pred             CcceEEEEeCCCCCChHHHHHHHhC
Q psy15351        166 VYNTTVMVVGVPNVGKSSIINALRS  190 (352)
Q Consensus       166 ~~~~~v~i~G~pnvGKStliN~l~~  190 (352)
                      +++-.++++|.+|+|||||++.|.+
T Consensus        44 ~~Ge~~~i~G~nGsGKSTLl~~l~G   68 (260)
T 2ghi_A           44 PSGTTCALVGHTGSGKSTIAKLLYR   68 (260)
T ss_dssp             CTTCEEEEECSTTSSHHHHHHHHTT
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhc
Confidence            3455799999999999999999997

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=93.38  E-value=0.045  Score=47.55  Aligned_cols=24  Identities=21%  Similarity=0.360  Sum_probs=21.5

Q ss_pred             cceEEEEeCCCCCChHHHHHHHhC
Q psy15351        167 YNTTVMVVGVPNVGKSSIINALRS  190 (352)
Q Consensus       167 ~~~~v~i~G~pnvGKStliN~l~~  190 (352)
                      ++-.++++|..|+|||||++.|.+
T Consensus        33 ~Ge~~~i~G~nGsGKSTLl~~l~G   56 (229)
T 2pze_A           33 RGQLLAVAGSTGAGKTSLLMMIMG   56 (229)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHTT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhC
Confidence            455789999999999999999987

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=93.38  E-value=0.035  Score=45.78  Aligned_cols=24  Identities=21%  Similarity=0.317  Sum_probs=16.6

Q ss_pred             cceEEEEeCCCCCChHHHHHHHhC
Q psy15351        167 YNTTVMVVGVPNVGKSSIINALRS  190 (352)
Q Consensus       167 ~~~~v~i~G~pnvGKStliN~l~~  190 (352)
                      ++..|.+.|.||+||||+.+.|..
T Consensus         4 ~~~~I~l~G~~GsGKST~a~~La~   27 (183)
T 2vli_A            4 RSPIIWINGPFGVGKTHTAHTLHE   27 (183)
T ss_dssp             -CCEEEEECCC----CHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            346799999999999999999973

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=93.38  E-value=0.046  Score=47.77  Aligned_cols=25  Identities=20%  Similarity=0.226  Sum_probs=22.3

Q ss_pred             CcceEEEEeCCCCCChHHHHHHHhC
Q psy15351        166 VYNTTVMVVGVPNVGKSSIINALRS  190 (352)
Q Consensus       166 ~~~~~v~i~G~pnvGKStliN~l~~  190 (352)
                      +++..++++|.+|+||||+++.|.+
T Consensus        23 ~~g~iigI~G~~GsGKSTl~k~L~~   47 (245)
T 2jeo_A           23 MRPFLIGVSGGTASGKSTVCEKIME   47 (245)
T ss_dssp             CCSEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHH
Confidence            4567899999999999999999975

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=93.37  E-value=0.035  Score=47.57  Aligned_cols=22  Identities=27%  Similarity=0.271  Sum_probs=20.1

Q ss_pred             eEEEEeCCCCCChHHHHHHHhC
Q psy15351        169 TTVMVVGVPNVGKSSIINALRS  190 (352)
Q Consensus       169 ~~v~i~G~pnvGKStliN~l~~  190 (352)
                      -.++++|..|+|||||++.|.+
T Consensus        23 e~~~liG~nGsGKSTLl~~l~G   44 (208)
T 3b85_A           23 TIVFGLGPAGSGKTYLAMAKAV   44 (208)
T ss_dssp             SEEEEECCTTSSTTHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhc
Confidence            3589999999999999999986

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=93.37  E-value=0.16  Score=44.74  Aligned_cols=44  Identities=11%  Similarity=0.160  Sum_probs=28.7

Q ss_pred             ccCEEEEEEcCCCCC-CCcCHHHHHHHh---C---CCCEEEEEEcccCCCc
Q psy15351         14 NVDIVIEVHDSRMPF-TGRNHLLQQSVQ---N---IRPMVLVLNKRDLINS   57 (352)
Q Consensus        14 ~aD~vl~VvDar~p~-~~~~~~l~~~l~---~---~k~~ilVlNK~Dl~~~   57 (352)
                      .+|++|+|+|...+- ...+..+.+.+.   .   .+|+++|+||+|+.++
T Consensus       116 ~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~~  166 (262)
T 3def_A          116 TIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPP  166 (262)
T ss_dssp             EECEEEEEEESSCSCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCCS
T ss_pred             CCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCCC
Confidence            789999998765432 222223333333   1   2589999999999754

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=93.36  E-value=0.044  Score=49.18  Aligned_cols=25  Identities=20%  Similarity=0.426  Sum_probs=21.9

Q ss_pred             cceEEEEeCCCCCChHHHHHHHhCC
Q psy15351        167 YNTTVMVVGVPNVGKSSIINALRSS  191 (352)
Q Consensus       167 ~~~~v~i~G~pnvGKStliN~l~~~  191 (352)
                      ++-.++++|..|+|||||++.|.+.
T Consensus        46 ~Ge~~~liG~NGsGKSTLlk~l~Gl   70 (279)
T 2ihy_A           46 KGDKWILYGLNGAGKTTLLNILNAY   70 (279)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCC
Confidence            4457899999999999999999973

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=93.35  E-value=0.052  Score=48.32  Aligned_cols=24  Identities=21%  Similarity=0.295  Sum_probs=21.6

Q ss_pred             cceEEEEeCCCCCChHHHHHHHhC
Q psy15351        167 YNTTVMVVGVPNVGKSSIINALRS  190 (352)
Q Consensus       167 ~~~~v~i~G~pnvGKStliN~l~~  190 (352)
                      ++=.++++|..|+|||||++.|.+
T Consensus        45 ~Ge~~~l~G~NGsGKSTLlk~l~G   68 (267)
T 2zu0_C           45 PGEVHAIMGPNGSGKSTLSATLAG   68 (267)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhC
Confidence            455789999999999999999997

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=93.34  E-value=0.046  Score=46.30  Aligned_cols=24  Identities=25%  Similarity=0.336  Sum_probs=21.4

Q ss_pred             cceEEEEeCCCCCChHHHHHHHhC
Q psy15351        167 YNTTVMVVGVPNVGKSSIINALRS  190 (352)
Q Consensus       167 ~~~~v~i~G~pnvGKStliN~l~~  190 (352)
                      ++..|++.|.||+||||+.+.|..
T Consensus         8 ~~~~I~l~G~~GsGKsT~~~~L~~   31 (215)
T 1nn5_A            8 RGALIVLEGVDRAGKSTQSRKLVE   31 (215)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            457899999999999999999974

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=93.33  E-value=0.05  Score=48.14  Aligned_cols=24  Identities=13%  Similarity=0.300  Sum_probs=21.6

Q ss_pred             cceEEEEeCCCCCChHHHHHHHhC
Q psy15351        167 YNTTVMVVGVPNVGKSSIINALRS  190 (352)
Q Consensus       167 ~~~~v~i~G~pnvGKStliN~l~~  190 (352)
                      ++-.++++|..|+|||||++.|.+
T Consensus        40 ~Gei~~l~G~NGsGKSTLlk~l~G   63 (256)
T 1vpl_A           40 EGEIFGLIGPNGAGKTTTLRIIST   63 (256)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHTT
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhc
Confidence            455789999999999999999997

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=93.28  E-value=0.048  Score=46.43  Aligned_cols=22  Identities=18%  Similarity=0.453  Sum_probs=19.5

Q ss_pred             eEEEEeCCCCCChHHHHHHHhC
Q psy15351        169 TTVMVVGVPNVGKSSIINALRS  190 (352)
Q Consensus       169 ~~v~i~G~pnvGKStliN~l~~  190 (352)
                      ++|+++|.||+||||+.+.|..
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~   22 (216)
T 3dl0_A            1 MNLVLMGLPGAGKGTQGERIVE   22 (216)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3689999999999999999963

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=93.28  E-value=0.054  Score=44.20  Aligned_cols=25  Identities=16%  Similarity=0.243  Sum_probs=21.9

Q ss_pred             cceEEEEeCCCCCChHHHHHHHhCC
Q psy15351        167 YNTTVMVVGVPNVGKSSIINALRSS  191 (352)
Q Consensus       167 ~~~~v~i~G~pnvGKStliN~l~~~  191 (352)
                      ++-.++++|..|+|||||++.|.+.
T Consensus        32 ~Ge~v~L~G~nGaGKTTLlr~l~g~   56 (158)
T 1htw_A           32 KAIMVYLNGDLGAGKTTLTRGMLQG   56 (158)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHh
Confidence            4557999999999999999999873

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	352
d1puja_	273	c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subti	3e-21
d1xzpa2	160	c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotog	1e-06
d2cxxa1	184	c.37.1.8 (A:2-185) GTP-binding protein engB {Pyroc	2e-06
d2cxxa1	184	c.37.1.8 (A:2-185) GTP-binding protein engB {Pyroc	2e-04
d1tq4a_	400	c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (	5e-06
d1tq4a_	400	c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (	2e-04
d1u0la2	225	c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C	5e-06
d1lnza2	185	c.37.1.8 (A:158-342) Obg GTP-binding protein middl	5e-05
d1lnza2	185	c.37.1.8 (A:158-342) Obg GTP-binding protein middl	0.003
d1udxa2	180	c.37.1.8 (A:157-336) Obg GTP-binding protein middl	6e-05
d1udxa2	180	c.37.1.8 (A:157-336) Obg GTP-binding protein middl	4e-04
d1h65a_	257	c.37.1.8 (A:) Chloroplast protein translocon GTPas	9e-05
d1h65a_	257	c.37.1.8 (A:) Chloroplast protein translocon GTPas	1e-04
d1mkya2	186	c.37.1.8 (A:173-358) Probable GTPase Der, N-termin	2e-04
d1t9ha2	231	c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C	2e-04
d1t9ha2	231	c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C	2e-04
d1mkya1	171	c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal	2e-04
d1mkya1	171	c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal	5e-04
d1egaa1	179	c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {	8e-04
d1egaa1	179	c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {	0.001
d1wf3a1	178	c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {	0.002
d1wf3a1	178	c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {	0.003
d1nrjb_	209	c.37.1.8 (B:) Signal recognition particle receptor	0.002
d1nrjb_	209	c.37.1.8 (B:) Signal recognition particle receptor	0.002

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]} Length = 273

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

 Score = 89.5 bits (221), Expect = 3e-21
 Identities = 61/344 (17%), Positives = 126/344 (36%), Gaps = 74/344 (21%)

Query: 1   MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
           M +  +++ + LK +DIV E+ D+                           R  ++S++ 
Sbjct: 2   MAKARREVTEKLKLIDIVYELVDA---------------------------RIPMSSRNP 34

Query: 61  SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
            +IE+ ++ +              P    + K       ++     +   +    ++ + 
Sbjct: 35  -MIEDILKNK--------------PRIMLLNKADKADAAVTQQWKEHFENQ-GIRSLSIN 78

Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
            V   G + I+ A +    +K               +  R    +      +++G+PNVG
Sbjct: 79  SVNGQGLNQIVPASKEILQEK--------------FDRMRAKGVKPRAIRALIIGIPNVG 124

Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
           KS++IN      + K      G + G+T S      +     + +LDTPGI  P+ ++  
Sbjct: 125 KSTLINR-----LAKKNIAKTGDRPGITTSQQ---WVKVGKELELLDTPGILWPKFEDEL 176

Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIK 300
            G+RLA    ++D ++   ++A + L +L      R  + + LDE  +DI  L      K
Sbjct: 177 VGLRLAVTGAIKDSIINLQDVAVFGLRFLEEHYPERLKERYGLDEIPEDIAELFDAIGEK 236

Query: 301 KKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDR 344
           +                  +  +   + I   R   FG +  ++
Sbjct: 237 RGCLMSGGL---------INYDKTTEVIIRDIRTEKFGRLSFEQ 271

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} Length = 160

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

 Score = 45.4 bits (106), Expect = 1e-06
 Identities = 31/112 (27%), Positives = 48/112 (42%), Gaps = 13/112 (11%)

Query: 171 VMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPG 230
           +++VG PNVGKS+++N L +          V    G TR V+S+  +    L  I+DT G
Sbjct: 3   MVIVGKPNVGKSTLLNRLLNE-----DRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAG 57

Query: 231 ISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFN 282
           +     D +E               + EI  AD +LF L+ +      D   
Sbjct: 58  VRSETNDLVERLGIERT--------LQEIEKADIVLFVLDASSPLDEEDRKI 101

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} Length = 184

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 45.1 bits (105), Expect = 2e-06
 Identities = 28/141 (19%), Positives = 44/141 (31%), Gaps = 11/141 (7%)

Query: 170 TVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTP 229
           T++  G  NVGKS++I  L       GK V  G + GVTR ++     +      I+D P
Sbjct: 2   TIIFAGRSNVGKSTLIYRLT------GKKVRRGKRPGVTRKIIEIEWKN----HKIIDMP 51

Query: 230 GISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSD- 288
           G         E   R+            +      ++                 + P D 
Sbjct: 52  GFGFMMGLPKEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDV 111

Query: 289 DIVMLLAKAAIKKKWFKRAFD 309
           +    L +  I         D
Sbjct: 112 EFYQFLRELDIPTIVAVNKLD 132

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} Length = 184

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 39.3 bits (90), Expect = 2e-04
 Identities = 11/28 (39%), Positives = 18/28 (64%)

Query: 116 TVMVVGVPNVGKSSIINALRSSHMKKGK 143
           T++  G  NVGKS++I  L    +++GK
Sbjct: 2   TIIFAGRSNVGKSTLIYRLTGKKVRRGK 29

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} Length = 400

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 45.5 bits (107), Expect = 5e-06
 Identities = 21/70 (30%), Positives = 24/70 (34%), Gaps = 2/70 (2%)

Query: 171 VMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPG 230
           V V G    GKSS IN LR    ++  A   G    VT       K    P +   D PG
Sbjct: 59  VAVTGETGSGKSSFINTLRGIGNEEEGAAKTGV-VEVTMER-HPYKHPNIPNVVFWDLPG 116

Query: 231 ISLPRIDNLE 240
           I         
Sbjct: 117 IGSTNFPPDT 126

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} Length = 400

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.5 bits (94), Expect = 2e-04
 Identities = 25/94 (26%), Positives = 34/94 (36%), Gaps = 7/94 (7%)

Query: 53  DLINSKHESLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEV 112
           DL +S       +K    +  IS+ I          G   I  T   ISD +     + +
Sbjct: 2   DLPSSFTG--YFKKFNTGRKIISQEILNLIELRMRAG--NIQLTNSAISDALKEIDSSVL 57

Query: 113 YNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVP 146
               V V G    GKSS IN LR    ++  A  
Sbjct: 58  N---VAVTGETGSGKSSFINTLRGIGNEEEGAAK 88

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} Length = 225

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

 Score = 44.7 bits (105), Expect = 5e-06
 Identities = 30/158 (18%), Positives = 51/158 (32%), Gaps = 33/158 (20%)

Query: 14  NVDIVIEVHDSRMPFTGRN----HLLQQSVQNIRPMVLVLNKRDLINSKHESLIEEKVRK 69
           NVD VI V   +MP T        L+      +   V+V+NK DL +      + E    
Sbjct: 10  NVDQVILVVTVKMPETSTYIIDKFLVLAEKNELET-VMVINKMDLYDEDDLRKVRELEEI 68

Query: 70  EQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSS 129
                  V  +       + +++ L                        + G+  VGKSS
Sbjct: 69  YSGLYPIVKTSAKTGMGIEELKEYLK------------------GKISTMAGLSGVGKSS 110

Query: 130 IINALR----------SSHMKKGKAVPILPTLQHISDN 157
           ++NA+           S  +++G+       L      
Sbjct: 111 LLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFG 148

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} Length = 185

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

 Score = 41.1 bits (95), Expect = 5e-05
 Identities = 17/92 (18%), Positives = 35/92 (38%), Gaps = 5/92 (5%)

Query: 170 TVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTP 229
            V +VG P+VGKS++++ + S+     K              +  V+  +     + D P
Sbjct: 3   DVGLVGFPSVGKSTLLSVVSSA-----KPKIADYHFTTLVPNLGMVETDDGRSFVMADLP 57

Query: 230 GISLPRIDNLECGMRLAACATLQDHLVGEINI 261
           G+       +  G +          +V  I++
Sbjct: 58  GLIEGAHQGVGLGHQFLRHIERTRVIVHVIDM 89

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} Length = 185

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

 Score = 36.1 bits (82), Expect = 0.003
 Identities = 16/74 (21%), Positives = 31/74 (41%), Gaps = 1/74 (1%)

Query: 116 TVMVVGVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVG 175
            V +VG P+VGKS++++ + S+  K          + ++    T   R+ V      ++ 
Sbjct: 3   DVGLVGFPSVGKSTLLSVVSSAKPKIADYHFT-TLVPNLGMVETDDGRSFVMADLPGLIE 61

Query: 176 VPNVGKSSIINALR 189
             + G       LR
Sbjct: 62  GAHQGVGLGHQFLR 75

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} Length = 180

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

 Score = 41.2 bits (95), Expect = 6e-05
 Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 5/61 (8%)

Query: 171 VMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPG 230
           V +VG PN GKSS++ A+  +                    +  V++SE+    + D PG
Sbjct: 4   VGLVGYPNAGKSSLLAAMTRA-----HPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPG 58

Query: 231 I 231
           I
Sbjct: 59  I 59

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} Length = 180

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

 Score = 38.5 bits (88), Expect = 4e-04
 Identities = 16/77 (20%), Positives = 27/77 (35%), Gaps = 1/77 (1%)

Query: 117 VMVVGVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGV 176
           V +VG PN GKSS++ A+  +H K            ++                  ++  
Sbjct: 4   VGLVGYPNAGKSSLLAAMTRAHPKIAPYPFT-TLSPNLGVVEVSEEERFTLADIPGIIEG 62

Query: 177 PNVGKSSIINALRSSHM 193
            + GK   +  LR    
Sbjct: 63  ASEGKGLGLEFLRHIAR 79

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 257

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

 Score = 41.3 bits (96), Expect = 9e-05
 Identities = 19/99 (19%), Positives = 40/99 (40%), Gaps = 5/99 (5%)

Query: 150 TLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTR 209
           T   + + +    + +V + T++V+G   VGKSS +N++        + V + P      
Sbjct: 14  TQTKLLELLGNLKQEDVNSLTILVMGKGGVGKSSTVNSIIGE-----RVVSISPFQSEGP 68

Query: 210 SVMSQVKISEKPLIYILDTPGISLPRIDNLECGMRLAAC 248
             +   +      + I+DTPG+      N      + + 
Sbjct: 69  RPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSF 107

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 257

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

 Score = 41.0 bits (95), Expect = 1e-04
 Identities = 16/83 (19%), Positives = 34/83 (40%), Gaps = 2/83 (2%)

Query: 89  GVQKILPTLQ-HISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPI 147
           G+    P  Q  + + +    + +V + T++V+G   VGKSS +N++    +        
Sbjct: 6   GINTFAPATQTKLLELLGNLKQEDVNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQS 65

Query: 148 LPTLQHISDNMTRYHRTEVYNTT 170
               + +  + +R   T     T
Sbjct: 66  -EGPRPVMVSRSRAGFTLNIIDT 87

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

 Score = 40.0 bits (92), Expect = 2e-04
 Identities = 25/115 (21%), Positives = 40/115 (34%), Gaps = 10/115 (8%)

Query: 170 TVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTP 229
            V +VG PNVGKS++ NA+        +   V P  G TR  +      +      +DT 
Sbjct: 10  KVAIVGRPNVGKSTLFNAIL-----NKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTA 64

Query: 230 GISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLD 284
           G+            + +    +       I  AD ++  L+ T      D     
Sbjct: 65  GLRRKSRVEPRTVEKYSNYRVVD-----SIEKADVVVIVLDATQGITRQDQRMAG 114

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} Length = 231

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

 Score = 40.1 bits (93), Expect = 2e-04
 Identities = 25/136 (18%), Positives = 46/136 (33%), Gaps = 21/136 (15%)

Query: 14  NVDIVIEVHDSRMPFTGRN----HLLQQSVQNIRPMVLVLNKRDLINSKHESLIEEKVRK 69
           NVD  + V  +  P          L+     +I+P ++ + K DLI        E++  +
Sbjct: 10  NVDQAVLVFSAVQPSFSTALLDRFLVLVEANDIQP-IICITKMDLI--------EDQDTE 60

Query: 70  EQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSS 129
           +        + N          K   +L  I  +              +  G   VGKSS
Sbjct: 61  DTIQAYAEDYRNIGYDVYLTSSKDQDSLADIIPHFQDKT--------TVFAGQSGVGKSS 112

Query: 130 IINALRSSHMKKGKAV 145
           ++NA+      +   +
Sbjct: 113 LLNAISPELGLRTNEI 128

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} Length = 231

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

 Score = 39.7 bits (92), Expect = 2e-04
 Identities = 16/107 (14%), Positives = 34/107 (31%), Gaps = 2/107 (1%)

Query: 149 PTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVT 208
                   +          + T +  G   VGKSS++NA+      +   +      G  
Sbjct: 78  YLTSSKDQDSLADIIPHFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKH 137

Query: 209 RSVMSQVKISEKPLIYILDTPGISLPRIDNLECGMRLAACATLQDHL 255
            +   ++  +      + DTPG S     ++E          +++  
Sbjct: 138 TTRHVELIHTSG--GLVADTPGFSSLEFTDIEEEELGYTFPDIREKS 182

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

 Score = 39.0 bits (89), Expect = 2e-04
 Identities = 13/57 (22%), Positives = 23/57 (40%)

Query: 116 TVMVVGVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVM 172
           TV++VG PNVGKS++ N L        +    +                ++ +T  +
Sbjct: 2   TVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGV 58

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

 Score = 38.2 bits (87), Expect = 5e-04
 Identities = 19/43 (44%), Positives = 25/43 (58%), Gaps = 5/43 (11%)

Query: 170 TVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVM 212
           TV++VG PNVGKS++ N L      K K   V  + GVTR  +
Sbjct: 2   TVLIVGRPNVGKSTLFNKLV-----KKKKAIVEDEEGVTRDPV 39

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 179

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 37.8 bits (86), Expect = 8e-04
 Identities = 23/83 (27%), Positives = 37/83 (44%), Gaps = 5/83 (6%)

Query: 171 VMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPG 230
           + +VG PNVGKS+++N L        K      KA  TR  +  +          +DTPG
Sbjct: 8   IAIVGRPNVGKSTLLNKLLGQ-----KISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPG 62

Query: 231 ISLPRIDNLECGMRLAACATLQD 253
           + +     +   M  AA +++ D
Sbjct: 63  LHMEEKRAINRLMNKAASSSIGD 85

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 179

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 37.0 bits (84), Expect = 0.001
 Identities = 11/56 (19%), Positives = 24/56 (42%)

Query: 117 VMVVGVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVM 172
           + +VG PNVGKS+++N L    +            + +  +    ++    +T  +
Sbjct: 8   IAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGL 63

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} Length = 178

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

 Score = 36.6 bits (83), Expect = 0.002
 Identities = 14/60 (23%), Positives = 24/60 (40%)

Query: 113 YNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVM 172
           Y+  V +VG PNVGKS+++N L    +      P     +          +    +T  +
Sbjct: 4   YSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGL 63

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} Length = 178

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

 Score = 36.3 bits (82), Expect = 0.003
 Identities = 12/26 (46%), Positives = 17/26 (65%)

Query: 167 YNTTVMVVGVPNVGKSSIINALRSSH 192
           Y+  V +VG PNVGKS+++N L    
Sbjct: 4   YSGFVAIVGKPNVGKSTLLNNLLGVK 29

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 209

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.5 bits (83), Expect = 0.002
 Identities = 7/30 (23%), Positives = 17/30 (56%)

Query: 113 YNTTVMVVGVPNVGKSSIINALRSSHMKKG 142
           Y  ++++ G  N GK+S++  L +  ++  
Sbjct: 2   YQPSIIIAGPQNSGKTSLLTLLTTDSVRPT 31

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 209

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.5 bits (83), Expect = 0.002
 Identities = 7/30 (23%), Positives = 17/30 (56%)

Query: 167 YNTTVMVVGVPNVGKSSIINALRSSHMKKG 196
           Y  ++++ G  N GK+S++  L +  ++  
Sbjct: 2   YQPSIIIAGPQNSGKTSLLTLLTTDSVRPT 31

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	352
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	100.0
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	99.88
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	99.87
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	99.42
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	99.42
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	99.4
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	99.37
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	99.31
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	99.23
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	99.22
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	99.22
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	99.17
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	99.14
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	99.08
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	99.06
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	99.04
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	99.04
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	99.03
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	99.01
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	99.0
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	98.93
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	98.91
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	98.88
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	98.87
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	98.83
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	98.81
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	98.79
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	98.75
d1nrjb_	209	Signal recognition particle receptor beta-subunit	98.7
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	98.68
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	98.64
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	98.63
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	98.52
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	98.52
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	98.52
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	98.49
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	98.46
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	98.42
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	98.4
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	98.39
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	98.37
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	98.36
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	98.35
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	98.33
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	98.31
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	98.31
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	98.3
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	98.3
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	98.29
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	98.28
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	98.27
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	98.26
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	98.26
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	98.25
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	98.25
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	98.25
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	98.25
d2fh5b1	207	Signal recognition particle receptor beta-subunit	98.24
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	98.23
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	98.23
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	98.22
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	98.21
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	98.21
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	98.21
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	98.21
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	98.2
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	98.2
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	98.18
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	98.17
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	98.17
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	98.17
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	98.16
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	98.16
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	98.15
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	98.15
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	98.15
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	98.14
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	98.14
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	98.14
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	98.13
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	98.13
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	98.12
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	98.12
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	98.11
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	98.11
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	98.1
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	98.09
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	98.08
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	98.08
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	98.08
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	98.07
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	98.07
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	98.05
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	98.05
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	98.05
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	98.05
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	98.04
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	98.04
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	98.03
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	98.02
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	98.02
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	98.01
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	98.0
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	98.0
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	98.0
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	98.0
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	97.99
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	97.99
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	97.99
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	97.99
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	97.98
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	97.98
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	97.98
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	97.97
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	97.97
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	97.95
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	97.93
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	97.93
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	97.91
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	97.91
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	97.91
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	97.9
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	97.9
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	97.87
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	97.86
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	97.85
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	97.85
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	97.83
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	97.82
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	97.8
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	97.8
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	97.8
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	97.79
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	97.78
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	97.76
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	97.72
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	97.72
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	97.71
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	97.69
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	97.69
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	97.68
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	97.65
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	97.63
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	97.62
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	97.6
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	97.54
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	97.53
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	97.47
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	97.46
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	97.46
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	97.44
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	97.42
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	97.41
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	97.39
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	97.38
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	97.38
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	97.27
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	97.26
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	97.19
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	97.12
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	97.08
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	97.08
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	97.06
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	97.03
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	97.02
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	96.98
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	96.91
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	96.48
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	96.47
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	96.45
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	96.44
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	96.4
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	96.36
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	96.26
d2fh5b1	207	Signal recognition particle receptor beta-subunit	96.23
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	96.2
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	96.17
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	96.16
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	95.98
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	95.76
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	95.72
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	95.62
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	95.53
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	95.46
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	95.36
d1nrjb_	209	Signal recognition particle receptor beta-subunit	95.28
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	95.23
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	95.11
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	95.1
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	94.99
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	94.91
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	94.9
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	94.89
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	94.83
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	94.81
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	94.75
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	94.73
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	94.68
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	94.57
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	94.56
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	94.54
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	94.53
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	94.51
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	94.32
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	94.29
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	94.29
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	94.29
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	94.25
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	94.19
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	94.17
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	94.13
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	94.11
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	94.07
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	94.03
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	94.02
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	93.99
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	93.98
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	93.91
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	93.83
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	93.81
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	93.81
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	93.8
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	93.65
d2awna2	232	Maltose transport protein MalK, N-terminal domain	93.65
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	93.63
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	93.6
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	93.57
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	93.54
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	93.51
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	93.37
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	93.36
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	93.34
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	93.28
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	93.24
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	93.23
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	93.2
d1g2912	240	Maltose transport protein MalK, N-terminal domain	93.17
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	93.11
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	93.09
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	93.04
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	92.97
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	92.94
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	92.88
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	92.86
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	92.75
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	92.44
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	92.28
d1vmaa2	213	GTPase domain of the signal recognition particle r	92.12
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	91.97
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	91.97
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	91.86
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	91.75
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	91.67
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	91.42
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	91.18
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	90.92
d2qy9a2	211	GTPase domain of the signal recognition particle r	90.86
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	90.78
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	90.49
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	90.32
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	90.23
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	90.09
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	89.93
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	89.89
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	89.73
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	89.7
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	89.58
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	89.47
d1okkd2	207	GTPase domain of the signal recognition particle r	89.2
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	89.13
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	88.92
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	88.86
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	88.85
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	88.79
d1j8yf2	211	GTPase domain of the signal sequence recognition p	88.7
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	88.49
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	88.14
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	87.9
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	87.48
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	87.44
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	87.3
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	86.78
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	86.76
d1tuea_	205	Replication protein E1 helicase domain {Human papi	86.67
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	86.62
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	86.62
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	86.51
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	86.5
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	86.38
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	85.54
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	85.26
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	85.25
d1ls1a2	207	GTPase domain of the signal sequence recognition p	84.97
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	84.72
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	84.7
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	84.49
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	83.65
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	83.54
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	83.53
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	83.29
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	82.91
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	82.06
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	81.86
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	81.65
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	80.86
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	80.44
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	80.38

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=100.00  E-value=6.8e-53  Score=383.93  Aligned_cols=271  Identities=25%  Similarity=0.454  Sum_probs=228.2

Q ss_pred             ChhHHHHHHHHhhccCEEEEEEcCCCCCCCcCHHHHHHHhCCCCEEEEEEcccCCCccchHHHHHHHHhhcCCCCcEEEe
Q psy15351          1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHESLIEEKVRKEQSHISEVIFT   80 (352)
Q Consensus         1 m~~~~~~~~~~i~~aD~vl~VvDar~p~~~~~~~l~~~l~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~v~~i   80 (352)
                      |+||++++++.++.+|+||+|+|||+|++++++.+++++ .+||+|+|+||+||++++..++|.++|++.+..   ++++
T Consensus         2 m~ka~r~i~~~i~~~DvIl~V~DaR~P~ss~~~~l~~~~-~~Kp~IlVlNK~DLv~~~~~~~w~~~f~~~~~~---~i~i   77 (273)
T d1puja_           2 MAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL-KNKPRIMLLNKADKADAAVTQQWKEHFENQGIR---SLSI   77 (273)
T ss_dssp             TTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC-SSSCEEEEEECGGGSCHHHHHHHHHHHHTTTCC---EEEC
T ss_pred             HHHHHHHHHHHHHhCCEEEEEEECCCCCCCCCHHHHHHH-cCCCeEEEEECccCCchHHHHHHHHHHHhcCCc---ccee
Confidence            999999999999999999999999999999999999998 589999999999999999999999999877766   8999


Q ss_pred             ecCCCCCCCHHHHHHHHHHHhhhccccccccccceeEEEeccCCCCchhHHHHHhhhhcccCCCCCCCcchhhhhccccc
Q psy15351         81 NCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTR  160 (352)
Q Consensus        81 Sa~~~~~~gi~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~nvgksslin~l~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (352)
                      |+.++  .|..++.+.+.+++++..                          +...                         
T Consensus        78 sa~~~--~~~~~~~~~~~~~l~~~~--------------------------~~~~-------------------------  104 (273)
T d1puja_          78 NSVNG--QGLNQIVPASKEILQEKF--------------------------DRMR-------------------------  104 (273)
T ss_dssp             CTTTC--TTGGGHHHHHHHHHHHHH--------------------------HHHH-------------------------
T ss_pred             ecccC--CCccccchhhhhhhhhhh--------------------------hhhh-------------------------
Confidence            99999  999998888776665421                          0000                         


Q ss_pred             cccccCcceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCCcEEEEeCCCCCCCCCCCHH
Q psy15351        161 YHRTEVYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE  240 (352)
Q Consensus       161 ~~~~~~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~~~~~~~~~  240 (352)
                      ........++|+++|+||||||||||+|.+     ++.+.+|+.||+|++.+. +..  ++.++++||||+..|...+.+
T Consensus       105 ~~~~~~~~~~v~vvG~PNvGKSsliN~L~~-----~~~~~~~~~pG~Tr~~~~-i~~--~~~~~l~DTPGi~~p~~~~~~  176 (273)
T d1puja_         105 AKGVKPRAIRALIIGIPNVGKSTLINRLAK-----KNIAKTGDRPGITTSQQW-VKV--GKELELLDTPGILWPKFEDEL  176 (273)
T ss_dssp             HTTCCCCCEEEEEEESTTSSHHHHHHHHHT-----SCCC------------CC-EEE--TTTEEEEECCCCCCSCCCCHH
T ss_pred             hccCCCCceEEEEEecCccchhhhhhhhhc-----cceEEECCcccccccceE-EEC--CCCeEEecCCCccccCCccHH
Confidence            011234679999999999999999999998     678899999999999864 443  457999999999999999999


Q ss_pred             HHHHHHHHhhhhhhccchhhhhHhHHhhhcCCCCCcccccccCCCCCccHHHHHHHHHHHhccccccccccCCcccCCCC
Q psy15351        241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIKKKWFKRAFDVSSNSVRMFPD  320 (352)
Q Consensus       241 ~~~~l~~~~~i~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~a~~~g~~~~~~~~~~g~~~~~~d  320 (352)
                      .++++++++++.+...+...++++++..+++.....+...|+++.+.++..++|+++|+++|++.++         |.||
T Consensus       177 ~~~~la~~~~i~~~~~~~~~~~~~ll~~l~~~~~~~l~~~~~~~~~~~d~~~~l~~ia~~~g~~~kg---------g~~D  247 (273)
T d1puja_         177 VGLRLAVTGAIKDSIINLQDVAVFGLRFLEEHYPERLKERYGLDEIPEDIAELFDAIGEKRGCLMSG---------GLIN  247 (273)
T ss_dssp             HHHHHHHHTSSCTTSSCHHHHHHHHHHHHHHHCHHHHHHHTTCSSCCSSHHHHHHHHHHHHTCBCST---------TCBC
T ss_pred             HHhhhhhcCCcchhhcchhhHHHHHHHHHHHhChHhhhHhcCCCCCCCCHHHHHHHHHHHhCCcccC---------CccC
Confidence            9999999999999999999999999999998877777888999988889999999999999998865         6799


Q ss_pred             HHHHHHHHHHHHhCCCCcceecCcc
Q psy15351        321 TGEVARIFIEHFRKGSFGSVMLDRD  345 (352)
Q Consensus       321 ~~~a~~~~l~~~~~g~l~~~~~~~~  345 (352)
                      +++||+.||+||++|+||+++||.|
T Consensus       248 ~~~aa~~~l~d~r~G~lg~~~ld~P  272 (273)
T d1puja_         248 YDKTTEVIIRDIRTEKFGRLSFEQP  272 (273)
T ss_dssp             HHHHHHHHHHHHHTTTTCSCCSCCC
T ss_pred             HHHHHHHHHHHHHcCCCceeeccCC
Confidence            9999999999999999999999976

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.88  E-value=4.6e-22  Score=172.09  Aligned_cols=188  Identities=23%  Similarity=0.306  Sum_probs=123.9

Q ss_pred             HhhccCEEEEEEcCCCCCCCcCHHHHHHHh----CCCCEEEEEEcccCCCccchHHHHHHHHh--hcCCCCcEEEeecCC
Q psy15351         11 HLKNVDIVIEVHDSRMPFTGRNHLLQQSVQ----NIRPMVLVLNKRDLINSKHESLIEEKVRK--EQSHISEVIFTNCRN   84 (352)
Q Consensus        11 ~i~~aD~vl~VvDar~p~~~~~~~l~~~l~----~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~--~~~~~~~v~~iSa~~   84 (352)
                      .+++.|.+++|+.+..|... ...+.+++-    .+.+.+||+||+||++++....|.+++..  .+++   ++.+|+++
T Consensus         7 ~vANiD~vliV~s~~~P~~~-~~~ldR~Lv~a~~~~i~pvIvlnK~DL~~~~~~~~~~~~~~~~~~~~~---v~~vSa~~   82 (225)
T d1u0la2           7 HVANVDQVILVVTVKMPETS-TYIIDKFLVLAEKNELETVMVINKMDLYDEDDLRKVRELEEIYSGLYP---IVKTSAKT   82 (225)
T ss_dssp             TEESCCEEEEEECSSTTCCC-HHHHHHHHHHHHHTTCEEEEEECCGGGCCHHHHHHHHHHHHHHTTTSC---EEECCTTT
T ss_pred             CcccCCEEEEEEeCCCCCCC-HHHHHHHHHHHHHcCCCEEEEEeCcccCCHHHHHHHHHhhccccccee---EEEecccc
Confidence            46899999999998877533 234555543    67888999999999987765566554432  3444   99999999


Q ss_pred             CCCCCHHHHHHHHHHHhhhccccccccccceeEEEeccCCCCchhHHHHHhhhhcccCCCCCCCcchhhhhccccccccc
Q psy15351         85 PNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRT  164 (352)
Q Consensus        85 ~~~~gi~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~nvgksslin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (352)
                      +  .|+++|.+.+.                                                                  
T Consensus        83 ~--~g~~~L~~~l~------------------------------------------------------------------   94 (225)
T d1u0la2          83 G--MGIEELKEYLK------------------------------------------------------------------   94 (225)
T ss_dssp             C--TTHHHHHHHHS------------------------------------------------------------------
T ss_pred             c--hhHhhHHHHhc------------------------------------------------------------------
Confidence            9  99998876542                                                                  


Q ss_pred             cCcceEEEEeCCCCCChHHHHHHHhCCCCC-CCCc-eecCCCCCceeEeeeeEEecCCCcEEEEeCCCCCCCCCCCHHHH
Q psy15351        165 EVYNTTVMVVGVPNVGKSSIINALRSSHMK-KGKA-VPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLECG  242 (352)
Q Consensus       165 ~~~~~~v~i~G~pnvGKStliN~l~~~~~~-~~~~-~~~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~~~~~~~~~~~  242 (352)
                         +.+.+++|.+|||||||||+|.+.... .+.. ...+.-.+||++.+ .+.+..  ..+++|||||....+.+.+. 
T Consensus        95 ---~kt~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs~~~~rGrHTTt~~~-l~~l~~--gg~iiDTPG~r~~~l~~~~~-  167 (225)
T d1u0la2          95 ---GKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQ-LLKFDF--GGYVVDTPGFANLEINDIEP-  167 (225)
T ss_dssp             ---SSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCC-EEECTT--SCEEESSCSSTTCCCCSSCH-
T ss_pred             ---CCeEEEECCCCCCHHHHHHhhcchhhhhccCcccccCCCCcccccee-EEEECC--CcEEEeCCccccccccccCc-
Confidence               124688999999999999999874211 1111 12233455777754 555543  46999999999876644321 


Q ss_pred             HHHHHHhhhhhhccchhhhhHhHHhhhcCCCCCcccccccCCCCCccHHHHHH
Q psy15351        243 MRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLA  295 (352)
Q Consensus       243 ~~l~~~~~i~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~l~~~~~~~~~~l~  295 (352)
                                      ..+.+++..+.  ...|.|.+|.+..+|.+.+.+-++
T Consensus       168 ----------------~~l~~~F~e~~--~~~CkF~dC~H~~EpgCaVk~av~  202 (225)
T d1u0la2         168 ----------------EELKHYFKEFG--DKQCFFSDCNHVDEPECGVKEAVE  202 (225)
T ss_dssp             ----------------HHHGGGSTTSS--SCCCSSTTCCSSSCSSCHHHHHHH
T ss_pred             ----------------chhhhhhhhHH--hCCCCCCCCCCCCCCCCHHHHHHH
Confidence                            11222222221  246899999999999997766554

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=99.87  E-value=1.5e-22  Score=175.66  Aligned_cols=212  Identities=20%  Similarity=0.260  Sum_probs=132.6

Q ss_pred             HhhccCEEEEEEcCCCCCCCcCHHHHHHHh----CCCCEEEEEEcccCCCccch----HHHHHHHHhhcCCCCcEEEeec
Q psy15351         11 HLKNVDIVIEVHDSRMPFTGRNHLLQQSVQ----NIRPMVLVLNKRDLINSKHE----SLIEEKVRKEQSHISEVIFTNC   82 (352)
Q Consensus        11 ~i~~aD~vl~VvDar~p~~~~~~~l~~~l~----~~k~~ilVlNK~Dl~~~~~~----~~~~~~~~~~~~~~~~v~~iSa   82 (352)
                      .++++|.+++|+.+.+|.. ....+.+++-    .+.+.+||+||+||++....    ..|.+.|...|++   ++.+|+
T Consensus         7 ~vANiD~~~iV~s~~~P~~-~~~~idR~Lv~a~~~~i~pvIvlnK~DL~~~~~~~~~~~~~~~~y~~~g~~---v~~~Sa   82 (231)
T d1t9ha2           7 PICNVDQAVLVFSAVQPSF-STALLDRFLVLVEANDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYD---VYLTSS   82 (231)
T ss_dssp             TEECCCEEEEEEESTTTTC-CHHHHHHHHHHHHTTTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCC---EEECCH
T ss_pred             CccccCEEEEEEECCCCCC-CHHHHHHHHHHHHHcCCCEEEEEecccccccHHHHHHHHHHHHHHhhcccc---ceeeec
Confidence            4689999999999988742 3345556653    57788999999999976543    3455566667887   999999


Q ss_pred             CCCCCCCHHHHHHHHHHHhhhccccccccccceeEEEeccCCCCchhHHHHHhhhhcccCCCCCCCcchhhhhccccccc
Q psy15351         83 RNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYH  162 (352)
Q Consensus        83 ~~~~~~gi~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~nvgksslin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (352)
                      .++  .|+++|.+.+.                                                                
T Consensus        83 ~~~--~gl~~L~~~l~----------------------------------------------------------------   96 (231)
T d1t9ha2          83 KDQ--DSLADIIPHFQ----------------------------------------------------------------   96 (231)
T ss_dssp             HHH--TTCTTTGGGGT----------------------------------------------------------------
T ss_pred             CCh--hHHHHHHHhhc----------------------------------------------------------------
Confidence            998  88887654321                                                                


Q ss_pred             cccCcceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCC--CceeEeeeeEEecCCCcEEEEeCCCCCCCCCCCHH
Q psy15351        163 RTEVYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKA--GVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE  240 (352)
Q Consensus       163 ~~~~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~p--g~T~~~~~~~~~~~~~~~~l~DtPGi~~~~~~~~~  240 (352)
                           +.+.+++|.+|||||||||+|.+....+..........  .||+.. ..+...   ..+++|||||....+.+.+
T Consensus        97 -----~~~~vl~G~SGVGKSSLiN~L~~~~~~~t~~vs~~~~rGrHTTt~~-~l~~~~---gg~iiDTPG~r~~~l~~~~  167 (231)
T d1t9ha2          97 -----DKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHV-ELIHTS---GGLVADTPGFSSLEFTDIE  167 (231)
T ss_dssp             -----TSEEEEEESHHHHHHHHHHHHCC-------------------CCCC-CEEEET---TEEEESSCSCSSCCCTTCC
T ss_pred             -----cceEEEECCCCccHHHHHHhhccHhHhhhcccccccCCCceeeeeE-EEEecC---CCEEEECCccccccccccC
Confidence                 12356889999999999999987421111111111122  356554 344432   3689999999987654322


Q ss_pred             HHHHHHHHhhhhhhccchhhhhHhHHhhhcCCCCCcccccccCCCCCccHHHHHHHHHHHhccccccccccCCcccCCCC
Q psy15351        241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIKKKWFKRAFDVSSNSVRMFPD  320 (352)
Q Consensus       241 ~~~~l~~~~~i~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~a~~~g~~~~~~~~~~g~~~~~~d  320 (352)
                      .                 ..+.+++..+......|+|.+|.+..+|.+.+.+-++.     |.+.             ++
T Consensus       168 ~-----------------~~l~~~F~ei~~~~~~CkF~dC~H~~EpgCaV~~av~~-----g~i~-------------~~  212 (231)
T d1t9ha2         168 E-----------------EELGYTFPDIREKSSSCKFRGCLHLKEPKCAVKQAVED-----GELK-------------QY  212 (231)
T ss_dssp             H-----------------HHHGGGSHHHHHHGGGCSSTTCCSSSCSSCHHHHHHHH-----TSSC-------------HH
T ss_pred             c-----------------ccchhhhhhHHHHhCCCCCCCCCCCCCCCchHHHHHHc-----CCCC-------------HH
Confidence            1                 11222332233334558889999999999977665542     3222             24


Q ss_pred             HHHHHHHHHHHHhCCC
Q psy15351        321 TGEVARIFIEHFRKGS  336 (352)
Q Consensus       321 ~~~a~~~~l~~~~~g~  336 (352)
                      -...+..+++.+.+.+
T Consensus       213 Ry~~Y~~l~~e~~~~~  228 (231)
T d1t9ha2         213 RYDHYVEFMTEIKDRK  228 (231)
T ss_dssp             HHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHHHhc
Confidence            4566777777776543

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=99.42  E-value=1.7e-14  Score=129.48  Aligned_cols=109  Identities=23%  Similarity=0.221  Sum_probs=65.7

Q ss_pred             ceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCC-----------------CcEEEEeCCC
Q psy15351        168 NTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEK-----------------PLIYILDTPG  230 (352)
Q Consensus       168 ~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~-----------------~~~~l~DtPG  230 (352)
                      .++||+||.||||||||+|+|++      ..+.++++|+||.++..++....+                 ..+.++|.||
T Consensus         2 ~~~~GivG~Pn~GKSTlf~~lt~------~~~~~~~ypf~ti~pn~gvv~v~d~r~~~l~~~~~~~~~~~a~i~~~Di~G   75 (278)
T d1jala1           2 GFKCGIVGLPNVGKSTLFNALTK------AGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAG   75 (278)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH------TC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCS
T ss_pred             CceEEEECCCCCCHHHHHHHHHC------CCCccccCCCCCCCCceEEEecccHhHHHHHHhcCCCceeeeeEEEEEccc
Confidence            57899999999999999999995      457899999999998765543322                 1478999999


Q ss_pred             CCCCCCCCHHHHHHHHHHhhhhhhccchhhhhHhHHhhhcCCCCCcccccccCCCCCccHHH
Q psy15351        231 ISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVM  292 (352)
Q Consensus       231 i~~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~l~~~~~~~~~  292 (352)
                      ++..  .+...++-..+...+++        +|+++||+++....+.....+-.+|..|++.
T Consensus        76 Li~g--a~~g~Glg~~FL~~ir~--------~d~LihVVr~f~~~di~~~~g~~dP~~Die~  127 (278)
T d1jala1          76 LVAG--ASKGEGLGNKFLANIRE--------TDAIGHVVRCFENDDIVHVAGKIDPLDDIDT  127 (278)
T ss_dssp             CCTT--HHHHGGGTCCHHHHHHT--------CSEEEEEEECSCC---------CCHHHHHHH
T ss_pred             cCCC--cccCCCccHHHHHHHHh--------ccceEEEeeccCCCCCcCCCCCcCHHHHHHH
Confidence            9975  22222332223344444        8899999987665443333444455555443

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=99.42  E-value=6.8e-14  Score=124.05  Aligned_cols=70  Identities=26%  Similarity=0.324  Sum_probs=58.6

Q ss_pred             cCcceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCCcEEEEeCCCCCCCCCCCH
Q psy15351        165 EVYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNL  239 (352)
Q Consensus       165 ~~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~~~~~~~~  239 (352)
                      ....++|+++|.||||||||+|+|++     +..+.+++.+++|++.+.......+..+.++||||+......+.
T Consensus        29 ~~~~l~I~LvG~tg~GKSSliN~ilg-----~~~~~vs~~~~~T~~~~~~~~~~~g~~i~viDTPGl~~~~~~~~   98 (257)
T d1h65a_          29 DVNSLTILVMGKGGVGKSSTVNSIIG-----ERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYIND   98 (257)
T ss_dssp             TCCEEEEEEEESTTSSHHHHHHHHHT-----SCCSCCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETTEECH
T ss_pred             CCCCcEEEEECCCCCcHHHHHHHHhC-----CCceeecCCCCcceeEEEEEEEeccEEEEEEeeecccCCcchHH
Confidence            34679999999999999999999998     56778889999999887766666677899999999987654443

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.40  E-value=3.3e-14  Score=128.69  Aligned_cols=111  Identities=17%  Similarity=0.180  Sum_probs=75.6

Q ss_pred             CcceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCC-----------------CcEEEEeC
Q psy15351        166 VYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEK-----------------PLIYILDT  228 (352)
Q Consensus       166 ~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~-----------------~~~~l~Dt  228 (352)
                      ...++||+||.||||||||+|+|++     ...+.++++||||.++..++....+                 ..+.++|.
T Consensus         8 ~~~~kiGivG~Pn~GKSTlfnalT~-----~~~~~~anypftTi~pn~g~v~v~d~r~~~l~~~~~~~~~~~~~i~~~Dv   82 (296)
T d1ni3a1           8 GNNLKTGIVGMPNVGKSTFFRAITK-----SVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDI   82 (296)
T ss_dssp             SSCCEEEEEECSSSSHHHHHHHHHH-----STTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECT
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHC-----CCCCCcCCCCccCccCCeEEEeccccchhhhhhcccCCceecccceeeec
Confidence            3568999999999999999999996     4456789999999988655433322                 25899999


Q ss_pred             CCCCCCCCCCHHHHHHHHHHhhhhhhccchhhhhHhHHhhhcCCCCCcccccccCCCCCccHH
Q psy15351        229 PGISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIV  291 (352)
Q Consensus       229 PGi~~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~l~~~~~~~~  291 (352)
                      ||+........  ++-..+...+++        +|.+++|++.....+.....+-.+|..|+.
T Consensus        83 aGLv~gA~~g~--GLGn~fL~~ir~--------~d~lihVV~~f~d~~i~~~~g~~dP~~Di~  135 (296)
T d1ni3a1          83 AGLTKGASTGV--GLGNAFLSHVRA--------VDAIYQVVRAFDDAEIIHVEGDVDPIRDLS  135 (296)
T ss_dssp             GGGCCCCCSSS--SSCHHHHHHHTT--------CSEEEEEEECCCTTCSSCCSSSSCHHHHHH
T ss_pred             ccccccccccc--ccHHHHHHHhhc--------cceeEEEEeccCCCCCCCCCCCcCcchhhh
Confidence            99998744322  222223344444        889999998766544333333334545544

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.37  E-value=5.1e-14  Score=128.75  Aligned_cols=90  Identities=22%  Similarity=0.232  Sum_probs=43.6

Q ss_pred             eEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEe--c----------------------CCCcEE
Q psy15351        169 TTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKI--S----------------------EKPLIY  224 (352)
Q Consensus       169 ~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~--~----------------------~~~~~~  224 (352)
                      ++||++|.||||||||+|+|++      ..+.++++|+||.++..++..  .                      ....+.
T Consensus         1 ~~v~lvG~pn~GKStlfn~lt~------~~~~v~nypftT~~pn~Gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~   74 (319)
T d1wxqa1           1 MEIGVVGKPNVGKSTFFSAATL------VDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVK   74 (319)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHC--------------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEE
T ss_pred             CcEeEECCCCCCHHHHHHHHHC------CCCchhcCCCCcccCccceeeCCCCchhhhhhhccCccccccccccccccEE
Confidence            4799999999999999999996      467899999999887544321  0                      012489


Q ss_pred             EEeCCCCCCCCCCCHHHHHHHHHHhhhhhhccchhhhhHhHHhhhcCCCC
Q psy15351        225 ILDTPGISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGN  274 (352)
Q Consensus       225 l~DtPGi~~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~il~~~~~~~~  274 (352)
                      ++|+||+....  +...++...+...+++        +|+++++++....
T Consensus        75 ~~D~pGli~ga--~~g~~~~~~~l~~i~~--------~d~ii~VVd~~~~  114 (319)
T d1wxqa1          75 MVDVAGLVPGA--HEGRGLGNKFLDDLRM--------ASALIHVVDATGK  114 (319)
T ss_dssp             EEECC-----------------CCCSSTT--------CSEEEEEEETTCC
T ss_pred             EEECCCcccch--hcccchHHHHHHhhcc--------ceEEEEEeccccc
Confidence            99999998763  2222332222233333        7888899987654

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.31  E-value=3.1e-13  Score=112.91  Aligned_cols=59  Identities=34%  Similarity=0.498  Sum_probs=46.7

Q ss_pred             EEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCCcEEEEeCCCCCCCCCCC
Q psy15351        170 TVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDN  238 (352)
Q Consensus       170 ~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~~~~~~~  238 (352)
                      +|+++|.||||||||+|+|++      ..+.+++.||+|++... +..   .++.++||||+......+
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~------~~~~~~~~~g~T~~~~~-~~~---~~~~ivDtpG~~~~~~~~   60 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTG------KKVRRGKRPGVTRKIIE-IEW---KNHKIIDMPGFGFMMGLP   60 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHS------CCCSSSSSTTCTTSCEE-EEE---TTEEEEECCCBSCCTTSC
T ss_pred             EEEEECCCCCCHHHHHHHHhC------CCceeeCCCCEeecccc-ccc---ccceecccCCceeccccc
Confidence            589999999999999999996      33468999999998643 332   358999999997664433

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.23  E-value=3.5e-13  Score=110.09  Aligned_cols=62  Identities=34%  Similarity=0.488  Sum_probs=52.5

Q ss_pred             eEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCCcEEEEeCCCCCCCC
Q psy15351        169 TTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPR  235 (352)
Q Consensus       169 ~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~~~~  235 (352)
                      ++|+++|.||||||||+|+|++     .+...+++.||+|+..+.......+..+.++||||+....
T Consensus         1 ikI~liG~~n~GKSSLin~l~g-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~   62 (160)
T d1xzpa2           1 LRMVIVGKPNVGKSTLLNRLLN-----EDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSET   62 (160)
T ss_dssp             EEEEEECCHHHHTCHHHHHHHH-----HTBCCCCCSSCCSSCSCCEEEEETTEEEEEEESSCCCSSC
T ss_pred             CEEEEECCCCCCHHHHHHHHhC-----CCceeeeccccccccceeEEEEeCCeeEEeccccccccCC
Confidence            5799999999999999999997     5667889999999988765555566688999999987653

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.22  E-value=7.2e-12  Score=104.20  Aligned_cols=62  Identities=35%  Similarity=0.601  Sum_probs=52.4

Q ss_pred             eEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCCcEEEEeCCCCCCCC
Q psy15351        169 TTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPR  235 (352)
Q Consensus       169 ~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~~~~  235 (352)
                      ..|+++|.||||||||+|+|++     .+...+++.|++|+..........+..+.++||||+....
T Consensus         6 ~~I~lvG~~~~GKSSLin~l~~-----~~~~~~~~~~~tt~~~~~~~~~~~~~~~~~~DtpG~~~~~   67 (178)
T d1wf3a1           6 GFVAIVGKPNVGKSTLLNNLLG-----VKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPM   67 (178)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHT-----SCCSCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCC
T ss_pred             cEEEEECCCCCCHHHHHHHHhC-----CCceeecccCCcccccccceeeeeeeeeeecccccccccc
Confidence            3699999999999999999997     5567789999999987765555566789999999998754

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.22  E-value=1.5e-11  Score=102.27  Aligned_cols=96  Identities=19%  Similarity=0.187  Sum_probs=75.1

Q ss_pred             HHHHHHHhhccCEEEEEEcCCCCCCCcCHHHHHHHh---CCCCEEEEEEcccCCCccchHHHHHHHHhhcCCCCcEEEee
Q psy15351          5 LKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQ---NIRPMVLVLNKRDLINSKHESLIEEKVRKEQSHISEVIFTN   81 (352)
Q Consensus         5 ~~~~~~~i~~aD~vl~VvDar~p~~~~~~~l~~~l~---~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~v~~iS   81 (352)
                      .+++...+.+||++|+|+|++.+....+..+.++++   .++|+++|+||+|+.+..  +++.+.+.+. .....++++|
T Consensus        75 ~~~~~~~~~~ad~il~v~D~~~~~~~~~~~i~~~l~~~~~~~piilv~NK~Dl~~~~--~~~~~~~~~~-~~~~~~~~iS  151 (178)
T d1wf3a1          75 DQEVYEALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGNKLDAAKYP--EEAMKAYHEL-LPEAEPRMLS  151 (178)
T ss_dssp             HHHHHHHTSSCSEEEEEEETTSCCCHHHHHHHHHHGGGTTTSCEEEEEECGGGCSSH--HHHHHHHHHT-STTSEEEECC
T ss_pred             ccccccccccccceeeeechhhhhcccccchhhheeccccchhhhhhhcccccccCH--HHHHHHHHhh-cccCceEEEe
Confidence            455677899999999999999987766666666665   468999999999997654  3445555443 2233688999


Q ss_pred             cCCCCCCCHHHHHHHHHHHhhhcc
Q psy15351         82 CRNPNCKGVQKILPTLQHISDNMT  105 (352)
Q Consensus        82 a~~~~~~gi~~L~~~i~~~~~~~~  105 (352)
                      |+++  .|+++|+++|.+.+++++
T Consensus       152 A~~~--~gi~~L~~~i~~~lpe~p  173 (178)
T d1wf3a1         152 ALDE--RQVAELKADLLALMPEGP  173 (178)
T ss_dssp             TTCH--HHHHHHHHHHHTTCCBCC
T ss_pred             cCCC--CCHHHHHHHHHHhCCCCC
Confidence            9999  999999999999988765

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=99.17  E-value=4.7e-11  Score=99.41  Aligned_cols=100  Identities=13%  Similarity=0.135  Sum_probs=74.5

Q ss_pred             hHHHHHHHHhhccCEEEEEEcCCCCCCCcCHHHHHHHh-CCCCEEEEEEcccCCCccchHHHHHHHH---hh--cCCCCc
Q psy15351          3 RGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQ-NIRPMVLVLNKRDLINSKHESLIEEKVR---KE--QSHISE   76 (352)
Q Consensus         3 ~~~~~~~~~i~~aD~vl~VvDar~p~~~~~~~l~~~l~-~~k~~ilVlNK~Dl~~~~~~~~~~~~~~---~~--~~~~~~   76 (352)
                      +..+.++..+..+|++++|+|++.+......++...+. .+.|+++|+||+|+++.+......+.++   +.  +....+
T Consensus        71 ~~~~~~~~~l~~~d~~ilv~d~~~g~~~~~~~~~~~~~~~~~p~iiv~NKiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (179)
T d1wb1a4          71 DLIRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDHFNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSS  150 (179)
T ss_dssp             HHHHHHHHHTTSCCEEEEEEETTTCSCHHHHHHHHHHHHTTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCC
T ss_pred             ccccchhhhhhhccccccccccccccchhhhhhhhhhhhcCCcceeccccccccCHHHHHHHHHHHHHHHHHhhcCCCCe
Confidence            35677888999999999999999887655555555444 7899999999999998764332222221   21  222235


Q ss_pred             EEEeecCCCCCCCHHHHHHHHHHHhhhc
Q psy15351         77 VIFTNCRNPNCKGVQKILPTLQHISDNM  104 (352)
Q Consensus        77 v~~iSa~~~~~~gi~~L~~~i~~~~~~~  104 (352)
                      ++++||++|  +|+++|++.|.+.+++.
T Consensus       151 iv~iSA~~g--~gi~eL~~~I~~~l~~~  176 (179)
T d1wb1a4         151 IIPISAKTG--FGVDELKNLIITTLNNA  176 (179)
T ss_dssp             EEECCTTTC--TTHHHHHHHHHHHHHHS
T ss_pred             EEEEEccCC--cCHHHHHHHHHhcCCcc
Confidence            999999999  99999999999888764

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=99.14  E-value=3.7e-11  Score=97.80  Aligned_cols=63  Identities=35%  Similarity=0.468  Sum_probs=52.7

Q ss_pred             ceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCCcEEEEeCCCCCCCC
Q psy15351        168 NTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPR  235 (352)
Q Consensus       168 ~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~~~~  235 (352)
                      +++|+++|.||||||||+|+|++     .+...++..||+|+..........+..+.++||||+....
T Consensus         1 ~~kI~lvG~~nvGKSsLin~l~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~   63 (161)
T d2gj8a1           1 GMKVVIAGRPNAGKSSLLNALAG-----REAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREAS   63 (161)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHT-----SCCSCCCSSTTCCCSCEEEEEEETTEEEEEEECCCCSCCS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhC-----CCceEeecccccccceEeeeeeccCceeeecccccccccc
Confidence            47899999999999999999997     4566788999999887765555556689999999998753

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.08  E-value=1e-10  Score=96.35  Aligned_cols=95  Identities=15%  Similarity=0.155  Sum_probs=72.8

Q ss_pred             HHHHHHHhhccCEEEEEEcCCCCCCCcCHHHHHHHh-CCCCEEEEEEcccCCCccchHHHHHHHHhhcCCCCcEEEeecC
Q psy15351          5 LKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQ-NIRPMVLVLNKRDLINSKHESLIEEKVRKEQSHISEVIFTNCR   83 (352)
Q Consensus         5 ~~~~~~~i~~aD~vl~VvDar~p~~~~~~~l~~~l~-~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~v~~iSa~   83 (352)
                      ...+...+..+|++++++|++.+....+..+.++++ .++|+++|+||+|+.++... +..+.+.+.+..  +++++||+
T Consensus        71 ~~~~~~~~~~ad~i~~~~~~~~~~~~~~~~~~~~l~~~~~pviiv~NK~Dl~~~~~~-~~~~~~~~~~~~--~~i~iSAk  147 (171)
T d1mkya1          71 KEVTLNMIREADLVLFVVDGKRGITKEDESLADFLRKSTVDTILVANKAENLREFER-EVKPELYSLGFG--EPIPVSAE  147 (171)
T ss_dssp             HHHHHHHHTTCSEEEEEEETTTCCCHHHHHHHHHHHHHTCCEEEEEESCCSHHHHHH-HTHHHHGGGSSC--SCEECBTT
T ss_pred             ccccccccccCcEEEEeecccccccccccccccccccccccccccchhhhhhhhhhh-HHHHHHHhcCCC--CeEEEecC
Confidence            445677889999999999999887776666666665 68999999999999754432 222222233433  68999999


Q ss_pred             CCCCCCHHHHHHHHHHHhhhc
Q psy15351         84 NPNCKGVQKILPTLQHISDNM  104 (352)
Q Consensus        84 ~~~~~gi~~L~~~i~~~~~~~  104 (352)
                      ++  .|+++|+++|.+.+++.
T Consensus       148 ~g--~gid~L~~~i~~~l~e~  166 (171)
T d1mkya1         148 HN--INLDTMLETIIKKLEEK  166 (171)
T ss_dssp             TT--BSHHHHHHHHHHHHHHT
T ss_pred             CC--CCHHHHHHHHHHhCCCC
Confidence            99  99999999999888764

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.06  E-value=1.5e-10  Score=108.43  Aligned_cols=71  Identities=27%  Similarity=0.265  Sum_probs=48.9

Q ss_pred             CcceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCCcEEEEeCCCCCCCCCCC
Q psy15351        166 VYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDN  238 (352)
Q Consensus       166 ~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~~~~~~~  238 (352)
                      ..+++|+++|.||||||||+|+|+|..... ..+...+.++||++.. .+.....++++|+||||+.......
T Consensus        54 ~~~l~Iai~G~~n~GKSSLiNaL~G~~~~~-~~~~~~g~~~tT~~~~-~~~~~~~~~~~l~DtPG~~~~~~~~  124 (400)
T d1tq4a_          54 SSVLNVAVTGETGSGKSSFINTLRGIGNEE-EGAAKTGVVEVTMERH-PYKHPNIPNVVFWDLPGIGSTNFPP  124 (400)
T ss_dssp             HCCEEEEEEECTTSSHHHHHHHHHTCCTTS-TTSCCCCC----CCCE-EEECSSCTTEEEEECCCGGGSSCCH
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCCcCC-CccCCCCCCCCceeee-eeeccCCCeEEEEeCCCcccccccH
Confidence            357999999999999999999999843222 2233444567888764 4455566689999999998875443

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.04  E-value=6.1e-10  Score=93.55  Aligned_cols=96  Identities=14%  Similarity=0.195  Sum_probs=73.3

Q ss_pred             HHHHHHHhhccCEEEEEEcCCCCCCCcCHHHHHHHh-CCCCEEEEEEcccCCCccchHHHHHHHHhh-cC-CCCcEEEee
Q psy15351          5 LKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQ-NIRPMVLVLNKRDLINSKHESLIEEKVRKE-QS-HISEVIFTN   81 (352)
Q Consensus         5 ~~~~~~~i~~aD~vl~VvDar~p~~~~~~~l~~~l~-~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~-~~-~~~~v~~iS   81 (352)
                      .....+....+|+|++|+|++.++...+..+.++++ .++|+++|+||+|+.++....+..+.+++. .. ...+++++|
T Consensus        96 ~~~~~~~~~~~~~vi~viD~~~~~~~~~~~~~~~l~~~~~piivv~NK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~S  175 (195)
T d1svia_          96 IETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYYGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDELILFS  175 (195)
T ss_dssp             HHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTSEEEECC
T ss_pred             HhhhhccccchhhhhhhhhccccccccccccccccccccCcceechhhccccCHHHHHHHHHHHHHHhcccCCCCEEEEe
Confidence            445566778889999999999888766666666666 789999999999998876655555444332 11 122589999


Q ss_pred             cCCCCCCCHHHHHHHHHHHhh
Q psy15351         82 CRNPNCKGVQKILPTLQHISD  102 (352)
Q Consensus        82 a~~~~~~gi~~L~~~i~~~~~  102 (352)
                      |+++  +|+++|+++|.+.+.
T Consensus       176 A~~~--~gi~el~~~i~~~l~  194 (195)
T d1svia_         176 SETK--KGKDEAWGAIKKMIN  194 (195)
T ss_dssp             TTTC--TTHHHHHHHHHHHHT
T ss_pred             CCCC--CCHHHHHHHHHHHhC
Confidence            9999  999999999987763

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.04  E-value=5.5e-11  Score=97.97  Aligned_cols=61  Identities=34%  Similarity=0.403  Sum_probs=39.0

Q ss_pred             EEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCCcEEEEeCCCCCCCC
Q psy15351        170 TVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPR  235 (352)
Q Consensus       170 ~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~~~~  235 (352)
                      +|+++|.||||||||+|+|++     .....++..+|+|+.............+.+.||||+....
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~-----~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~   62 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVK-----KKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNP   62 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC-------------------CCSEEEEEETTEEEEEEECTTTTSSG
T ss_pred             EEEEECCCCCCHHHHHHHHhC-----CCcceecccCceeeccccccccccccccccccccceeeee
Confidence            589999999999999999997     4666789999999987665544455578999999998753

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=99.03  E-value=2.9e-11  Score=100.95  Aligned_cols=58  Identities=24%  Similarity=0.313  Sum_probs=44.5

Q ss_pred             EEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeE-EecCCCcEEEEeCCCCCC
Q psy15351        170 TVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQV-KISEKPLIYILDTPGISL  233 (352)
Q Consensus       170 ~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~-~~~~~~~~~l~DtPGi~~  233 (352)
                      .|+++|.||||||||+|+|++     .+ ..+++.+++|+...... ....+..+.++||||+..
T Consensus         3 ~VaiiG~~nvGKSSLin~L~~-----~~-~~~~~~~~~T~~~~~~~~~~~~~~~~~~~DtpG~~~   61 (185)
T d1lnza2           3 DVGLVGFPSVGKSTLLSVVSS-----AK-PKIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIE   61 (185)
T ss_dssp             CEEEESSTTSSHHHHHHHSEE-----EC-CEESSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHhC-----CC-CceecCCCceEeeeeceeEecCCcEEEEecCCCccc
Confidence            499999999999999999996     23 46677788777654433 333455799999999864

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.01  E-value=1.6e-10  Score=96.23  Aligned_cols=62  Identities=31%  Similarity=0.442  Sum_probs=46.7

Q ss_pred             cceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCCcEEEEeCCCCCC
Q psy15351        167 YNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISL  233 (352)
Q Consensus       167 ~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~~  233 (352)
                      ..++|+++|.||||||||+|+|++     ...+.+++.+++|+..........+..+.++||||+..
T Consensus         7 ~~~kV~iiG~~~~GKSTLin~l~~-----~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~d~~g~~~   68 (186)
T d1mkya2           7 DAIKVAIVGRPNVGKSTLFNAILN-----KERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRR   68 (186)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHT-----STTEEECCCC------CCEEEEETTEEEEESSCSCC--
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHC-----CCcceeecccccccccceeeeccCCceeeeeccCCccc
Confidence            468999999999999999999997     56788999999998876655555667899999999865

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.00  E-value=1.9e-10  Score=95.53  Aligned_cols=59  Identities=34%  Similarity=0.403  Sum_probs=43.1

Q ss_pred             EEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeee-EEecCCCcEEEEeCCCCCCC
Q psy15351        170 TVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQ-VKISEKPLIYILDTPGISLP  234 (352)
Q Consensus       170 ~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~-~~~~~~~~~~l~DtPGi~~~  234 (352)
                      .|+++|.||||||||+|+|++      ....+++.+++|+..... .....+..+.++||||+...
T Consensus         3 ~VaivG~~nvGKSTLin~L~~------~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~   62 (180)
T d1udxa2           3 DVGLVGYPNAGKSSLLAAMTR------AHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEG   62 (180)
T ss_dssp             SEEEECCGGGCHHHHHHHHCS------SCCEECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCC
T ss_pred             EEEEECCCCCCHHHHHHHHhC------CCCceeccCCCceeeeeceeeecCCCeEEEcCCCeeecC
Confidence            389999999999999999996      233455666665554433 33334557999999999864

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=98.93  E-value=2.3e-09  Score=89.01  Aligned_cols=96  Identities=18%  Similarity=0.276  Sum_probs=72.6

Q ss_pred             HHHHHHhhccCEEEEEEcCCCCCCCcCHHHHHHHh-CCCCEEEEEEcccCCCccc--hHHHHHHHHhh--cCCCCcEEEe
Q psy15351          6 KDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQ-NIRPMVLVLNKRDLINSKH--ESLIEEKVRKE--QSHISEVIFT   80 (352)
Q Consensus         6 ~~~~~~i~~aD~vl~VvDar~p~~~~~~~l~~~l~-~~k~~ilVlNK~Dl~~~~~--~~~~~~~~~~~--~~~~~~v~~i   80 (352)
                      ..+...++.+|++++|+|+..+.......+..++. .+.|.++|+||+|+.....  ..+..+.+++.  ...+.+++++
T Consensus        83 ~~~~~~~~~~dvii~v~d~~~~~~~~~~~~~~~~~~~~~~~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v  162 (186)
T d1mkya2          83 YRVVDSIEKADVVVIVLDATQGITRQDQRMAGLMERRGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLIFT  162 (186)
T ss_dssp             HHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCEEEC
T ss_pred             HHHHHHHhcCCEEEEeecccccchhhHHHHHHHHHHcCCceeeeccchhhhcchhhhhhhHHHHHHHHhcccCCCeEEEE
Confidence            45667789999999999999887766666665555 7899999999999986543  34444444432  1223469999


Q ss_pred             ecCCCCCCCHHHHHHHHHHHhhh
Q psy15351         81 NCRNPNCKGVQKILPTLQHISDN  103 (352)
Q Consensus        81 Sa~~~~~~gi~~L~~~i~~~~~~  103 (352)
                      ||+++  .|+++|+++|.+.+..
T Consensus       163 Sa~~g--~gv~~L~~~i~~~~~~  183 (186)
T d1mkya2         163 SADKG--WNIDRMIDAMNLAYAS  183 (186)
T ss_dssp             BTTTT--BSHHHHHHHHHHHHHH
T ss_pred             eCCCC--CCHHHHHHHHHHHHHh
Confidence            99999  9999999999876654

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=98.91  E-value=1.5e-09  Score=89.91  Aligned_cols=94  Identities=17%  Similarity=0.247  Sum_probs=71.6

Q ss_pred             HHHHHHhhccCEEEEEEcCCCCCCCcCHHHHHHHh------CCCCEEEEEEcccCCCccchHHHHHHHHhhcCCCCcEEE
Q psy15351          6 KDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQ------NIRPMVLVLNKRDLINSKHESLIEEKVRKEQSHISEVIF   79 (352)
Q Consensus         6 ~~~~~~i~~aD~vl~VvDar~p~~~~~~~l~~~l~------~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~v~~   79 (352)
                      .++.+.+..+|++++++|+.............++.      .++|+++|+||+|+.+++..+...+.+.+.+.+   +++
T Consensus        71 ~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~D~~~~~~~~~~~~~~~~~~~~---~~~  147 (180)
T d1udxa2          71 LEFLRHIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEEEAVKALADALAREGLA---VLP  147 (180)
T ss_dssp             HHHHHHHTSSSEEEEEEETTSCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCHHHHHHHHHHHHTTTSC---EEE
T ss_pred             HHHHHHHHhhhhhhhhcccccccccchhhhhhhhhccccccchhhhhhhhhhhhhhhHHHHHHHHHHHHhcCCe---EEE
Confidence            46778899999999999986432221111112221      368999999999999888777777777666665   999


Q ss_pred             eecCCCCCCCHHHHHHHHHHHhhhc
Q psy15351         80 TNCRNPNCKGVQKILPTLQHISDNM  104 (352)
Q Consensus        80 iSa~~~~~~gi~~L~~~i~~~~~~~  104 (352)
                      +||+++  +|+++|++.|.++++..
T Consensus       148 iSA~tg--~gid~L~~~i~~~l~~~  170 (180)
T d1udxa2         148 VSALTG--AGLPALKEALHALVRST  170 (180)
T ss_dssp             CCTTTC--TTHHHHHHHHHHHHHTS
T ss_pred             EEcCCC--CCHHHHHHHHHHHHhhc
Confidence            999999  99999999999888754

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=98.88  E-value=3.4e-09  Score=89.81  Aligned_cols=99  Identities=10%  Similarity=0.131  Sum_probs=69.2

Q ss_pred             hHHHHHHHHhhccCEEEEEEcCCCCCCC-cCHHHHHHHh--CCCCEEEEEEcccCCCccchHHH----HHHHHhhcCCCC
Q psy15351          3 RGLKDIEKHLKNVDIVIEVHDSRMPFTG-RNHLLQQSVQ--NIRPMVLVLNKRDLINSKHESLI----EEKVRKEQSHIS   75 (352)
Q Consensus         3 ~~~~~~~~~i~~aD~vl~VvDar~p~~~-~~~~l~~~l~--~~k~~ilVlNK~Dl~~~~~~~~~----~~~~~~~~~~~~   75 (352)
                      ...+++...+..+|++|+|+|++.++.. ...+...++.  ..+|+++++||+|+++.......    .+++......-.
T Consensus        98 df~~~~~~~~~~ad~ailvVda~~gi~~~~t~e~~~~~~~~~i~~iIV~vNK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~  177 (205)
T d2qn6a3          98 VLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIGVKNLIIVQNKVDVVSKEEALSQYRQIKQFTKGTWAENV  177 (205)
T ss_dssp             HHHHHHHHTSSCCSEEEEEEETTSCSSCHHHHHHHHHHHHTTCCCEEEEEECGGGSCHHHHHHHHHHHHHHHTTSTTTTC
T ss_pred             HHHhhhhcceeccccccccccccccccchhHHHHHHHHHHcCCceeeeccccCCCccchHHHHHHHHHHHHhccccCCCC
Confidence            4567888999999999999999987632 2223333333  34688889999999986542222    222222222222


Q ss_pred             cEEEeecCCCCCCCHHHHHHHHHHHhhh
Q psy15351         76 EVIFTNCRNPNCKGVQKILPTLQHISDN  103 (352)
Q Consensus        76 ~v~~iSa~~~~~~gi~~L~~~i~~~~~~  103 (352)
                      +++++||+++  .|+++|++.|.+++|.
T Consensus       178 p~ipiSA~~g--~nI~~L~e~i~~~ip~  203 (205)
T d2qn6a3         178 PIIPVSALHK--INIDSLIEGIEEYIKT  203 (205)
T ss_dssp             CEEECBTTTT--BSHHHHHHHHHHHSCC
T ss_pred             eEEEEeCCCC--CChHHHHHHHHhhCCC
Confidence            5899999999  9999999999988764

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.87  E-value=5.2e-09  Score=84.53  Aligned_cols=89  Identities=18%  Similarity=0.371  Sum_probs=69.0

Q ss_pred             HHHHHHHHhhccCEEEEEEcCCCCCCCcCHHHHHHHhCCCCEEEEEEcccCCCccchHHHHHHHHhhcCCCCcEEEeecC
Q psy15351          4 GLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHESLIEEKVRKEQSHISEVIFTNCR   83 (352)
Q Consensus         4 ~~~~~~~~i~~aD~vl~VvDar~p~~~~~~~l~~~l~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~v~~iSa~   83 (352)
                      ++++++..+..+|++++|+|++++....+..+...+ ...++++++||+|+.++....+..+.+ ....   +++++||+
T Consensus        70 ~~~~~~~~~~~ad~ii~v~d~~~~~~~~~~~~~~~~-~~~~~i~~~~k~d~~~~~~~~~~~~~~-~~~~---~~~~vSA~  144 (160)
T d1xzpa2          70 GIERTLQEIEKADIVLFVLDASSPLDEEDRKILERI-KNKRYLVVINKVDVVEKINEEEIKNKL-GTDR---HMVKISAL  144 (160)
T ss_dssp             CHHHHHHHHHHCSEEEEEEETTSCCCHHHHHHHHHH-TTSSEEEEEEECSSCCCCCHHHHHHHH-TCST---TEEEEEGG
T ss_pred             HHHHHHHHHHhCCEEEEEEeCCCCcchhhhhhhhhc-ccccceeeeeeccccchhhhHHHHHHh-CCCC---cEEEEECC
Confidence            356788889999999999999988765555554444 678899999999999877655544443 2223   59999999


Q ss_pred             CCCCCCHHHHHHHHHH
Q psy15351         84 NPNCKGVQKILPTLQH   99 (352)
Q Consensus        84 ~~~~~gi~~L~~~i~~   99 (352)
                      ++  .|+++|+++|.+
T Consensus       145 ~g--~gi~~L~~~I~k  158 (160)
T d1xzpa2         145 KG--EGLEKLEESIYR  158 (160)
T ss_dssp             GT--CCHHHHHHHHHH
T ss_pred             CC--CCHHHHHHHHHh
Confidence            99  999999988753

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.83  E-value=2.2e-09  Score=88.44  Aligned_cols=59  Identities=32%  Similarity=0.464  Sum_probs=48.3

Q ss_pred             EEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCCcEEEEeCCCCCC
Q psy15351        170 TVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISL  233 (352)
Q Consensus       170 ~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~~  233 (352)
                      .|+++|.||||||||||+|++     .+...++..+++|+.............+.++|+||...
T Consensus         7 ~I~iiG~~nvGKSSLin~L~~-----~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~   65 (179)
T d1egaa1           7 FIAIVGRPNVGKSTLLNKLLG-----QKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHM   65 (179)
T ss_dssp             EEEEECSSSSSHHHHHHHHHT-----CSEEECCCCSSCCSSCEEEEEEETTEEEEEESSSSCCH
T ss_pred             EEEEECCCCCCHHHHHHHHhC-----CCceeeccCCCceEEEEEeeeecCCceeEeecCCCcee
Confidence            489999999999999999997     56677888888887766566666666778899999864

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=98.81  E-value=9.4e-09  Score=86.03  Aligned_cols=62  Identities=27%  Similarity=0.435  Sum_probs=38.7

Q ss_pred             eEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCCcEEEEeCCCCCCCCCC
Q psy15351        169 TTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRID  237 (352)
Q Consensus       169 ~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~~~~~~  237 (352)
                      .+|+++|.||||||||+|+|++.    +..+.++..+++|..... ...  ...+.++|+||+......
T Consensus        24 ~~I~lvG~~n~GKSTLin~L~g~----~~~~~~~~~~~~t~~~~~-~~~--~~~~~~~d~~~~~~~~~~   85 (195)
T d1svia_          24 PEIALAGRSNVGKSSFINSLINR----KNLARTSSKPGKTQTLNF-YII--NDELHFVDVPGYGFAKVS   85 (195)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHTC-----------------CCEEE-EEE--TTTEEEEECCCBCCCSSC
T ss_pred             CEEEEECCCCCCHHHHHHHhcCC----CceEEeecccceeeeccc-ccc--cccceEEEEEeecccccc
Confidence            48999999999999999999973    345688889999987643 322  235889999999887544

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.79  E-value=2.5e-08  Score=82.26  Aligned_cols=92  Identities=15%  Similarity=0.169  Sum_probs=64.6

Q ss_pred             HHHHhhccCEEEEEEcCCCC-----------CCCcCHHHHHHHh-CCCCEEEEEEcccCCCccchHHHHHHHHhh-cCC-
Q psy15351          8 IEKHLKNVDIVIEVHDSRMP-----------FTGRNHLLQQSVQ-NIRPMVLVLNKRDLINSKHESLIEEKVRKE-QSH-   73 (352)
Q Consensus         8 ~~~~i~~aD~vl~VvDar~p-----------~~~~~~~l~~~l~-~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~-~~~-   73 (352)
                      +...++.+|++++|+|++.+           ....+.++.++++ .++|+++|+||+|++...  +.+.+.+.+. ... 
T Consensus        75 ~~~~~~~~d~~~~vvD~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~p~iiv~NK~D~~~~~--~~~~~~~~~~~~~~~  152 (184)
T d2cxxa1          75 IEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNV--QEVINFLAEKFEVPL  152 (184)
T ss_dssp             HHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCH--HHHHHHHHHHHTCCG
T ss_pred             hhhcccccchheeeeeccccchhhhhhhhccccHHHHHHHHHHHHcCCCEEEEEeeeehhhhH--HHHHHHHHHHhcccc
Confidence            45667889999999999743           3334445555554 689999999999988643  2333332211 111 


Q ss_pred             ---CCcEEEeecCCCCCCCHHHHHHHHHHHhhh
Q psy15351         74 ---ISEVIFTNCRNPNCKGVQKILPTLQHISDN  103 (352)
Q Consensus        74 ---~~~v~~iSa~~~~~~gi~~L~~~i~~~~~~  103 (352)
                         ...++++||+++  +|+++|+++|.+.+++
T Consensus       153 ~~~~~~~~~vSA~~g--~gi~~L~~~i~~~l~e  183 (184)
T d2cxxa1         153 SEIDKVFIPISAKFG--DNIERLKNRIFEVIRE  183 (184)
T ss_dssp             GGHHHHEEECCTTTC--TTHHHHHHHHHHHHHH
T ss_pred             cccCCeEEEEECCCC--CCHHHHHHHHHHHccC
Confidence               114788999999  9999999999988875

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=98.75  E-value=1.8e-08  Score=84.55  Aligned_cols=98  Identities=10%  Similarity=0.107  Sum_probs=67.0

Q ss_pred             hHHHHHHHHhhccCEEEEEEcCCCCCCCc-CHHHHHHHh--CCCCEEEEEEcccCCCccchHHH----HHHHHhhcCCCC
Q psy15351          3 RGLKDIEKHLKNVDIVIEVHDSRMPFTGR-NHLLQQSVQ--NIRPMVLVLNKRDLINSKHESLI----EEKVRKEQSHIS   75 (352)
Q Consensus         3 ~~~~~~~~~i~~aD~vl~VvDar~p~~~~-~~~l~~~l~--~~k~~ilVlNK~Dl~~~~~~~~~----~~~~~~~~~~~~   75 (352)
                      ...+.+.+.+..+|++++|+|+..+.... ..+...+++  ..+++++++||+|+.+.......    .+++...+....
T Consensus        90 ~f~~~~~~~~~~~d~~ilvvda~~g~~~~~t~e~~~~~~~~~~~~iiv~inK~D~~d~~~~~~~~~~~~~~~~~~~~~~~  169 (195)
T d1kk1a3          90 ALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQIIGQKNIIIAQNKIELVDKEKALENYRQIKEFIEGTVAENA  169 (195)
T ss_dssp             HHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSCHHHHHHHHHHHHHHHTTSTTTTC
T ss_pred             hhhHHhhcccccccccccccchhhhhhhhhhHHHHHHHHHhcCccceeeeecccchhhHHHHHHHHHHHHHhccccCCCC
Confidence            34567888899999999999999875332 122223333  34557889999999987543222    223322222222


Q ss_pred             cEEEeecCCCCCCCHHHHHHHHHHHhh
Q psy15351         76 EVIFTNCRNPNCKGVQKILPTLQHISD  102 (352)
Q Consensus        76 ~v~~iSa~~~~~~gi~~L~~~i~~~~~  102 (352)
                      +++++||++|  +|+++|++.+.+++|
T Consensus       170 ~iIpiSA~~G--~ni~~Ll~~I~~~iP  194 (195)
T d1kk1a3         170 PIIPISALHG--ANIDVLVKAIEDFIP  194 (195)
T ss_dssp             CEEECBTTTT--BSHHHHHHHHHHHSC
T ss_pred             eEEEEECCCC--CCHHHHHHHHHHHCc
Confidence            5899999999  999999999987765

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.70  E-value=3.7e-09  Score=89.24  Aligned_cols=57  Identities=18%  Similarity=0.285  Sum_probs=42.9

Q ss_pred             ceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCCcEEEEeCCCCCCC
Q psy15351        168 NTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLP  234 (352)
Q Consensus       168 ~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~~~  234 (352)
                      .++|+++|.||||||||+|+|++.     +.     .|++|+..........+..+.++||||....
T Consensus         3 ~p~V~lvG~~n~GKTSLln~l~~~-----~~-----~~~tt~~~~~~~~~~~~~~~~l~D~~g~~~~   59 (209)
T d1nrjb_           3 QPSIIIAGPQNSGKTSLLTLLTTD-----SV-----RPTVVSQEPLSAADYDGSGVTLVDFPGHVKL   59 (209)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHS-----SC-----CCBCCCSSCEEETTGGGSSCEEEECCCCGGG
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC-----CC-----CCeEEecceEEEEEeCCeEEEEEecccccch
Confidence            358999999999999999999972     21     3567766554444445667999999997754

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.68  E-value=9.6e-09  Score=88.42  Aligned_cols=93  Identities=17%  Similarity=0.196  Sum_probs=66.7

Q ss_pred             HHHhhccCEEEEEEcCCCCCCCcCHHHHHHHh-CCCCEEEEEEcccCCCccchH------------------H-------
Q psy15351          9 EKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQ-NIRPMVLVLNKRDLINSKHES------------------L-------   62 (352)
Q Consensus         9 ~~~i~~aD~vl~VvDar~p~~~~~~~l~~~l~-~~k~~ilVlNK~Dl~~~~~~~------------------~-------   62 (352)
                      ...+..+|++|+|+||..++......+..++. .++|+++|+||+|+++.+...                  .       
T Consensus        88 ~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~iivlNK~D~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  167 (227)
T d1g7sa4          88 KRGGALADLAILIVDINEGFKPQTQEALNILRMYRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQVQQKLDTKVYE  167 (227)
T ss_dssp             CSSSBSCSEEEEEEETTTCCCHHHHHHHHHHHHTTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHHHHHHHHHHHHH
T ss_pred             hhcccccceEEEEEecccCcccchhHHHHHhhcCCCeEEEEEECccCCCchhhhhhHHHHHhhhcchHHHHHHHHHHHHH
Confidence            34678899999999999988877777666665 789999999999998654210                  0       


Q ss_pred             HHHHHHhhcC------------CCCcEEEeecCCCCCCCHHHHHHHHHHHhhh
Q psy15351         63 IEEKVRKEQS------------HISEVIFTNCRNPNCKGVQKILPTLQHISDN  103 (352)
Q Consensus        63 ~~~~~~~~~~------------~~~~v~~iSa~~~~~~gi~~L~~~i~~~~~~  103 (352)
                      ....+.+.+.            ...+++++||.+|  .|+++|++.|..+.++
T Consensus       168 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~pvSa~~G--~gid~Ll~~l~~l~~~  218 (227)
T d1g7sa4         168 LVGKLHEEGFESERFDRVTDFASQVSIIPISAITG--EGIPELLTMLMGLAQQ  218 (227)
T ss_dssp             HHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTC--TTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhhhhhhhcccccccCCCeEEEeeCCCC--CCHHHHHHHHHHHHHH
Confidence            0011111111            1125889999999  9999999999877654

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=98.64  E-value=2.6e-08  Score=83.70  Aligned_cols=100  Identities=16%  Similarity=0.094  Sum_probs=68.4

Q ss_pred             hHHHHHHHHhhccCEEEEEEcCCCCCCCcCHHHHHHHh--CCCCEEEEEEcccCCCccch-H----HHHHHHHhhcCC--
Q psy15351          3 RGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQ--NIRPMVLVLNKRDLINSKHE-S----LIEEKVRKEQSH--   73 (352)
Q Consensus         3 ~~~~~~~~~i~~aD~vl~VvDar~p~~~~~~~l~~~l~--~~k~~ilVlNK~Dl~~~~~~-~----~~~~~~~~~~~~--   73 (352)
                      ...+.+...+..+|++|+|+||..++.....+...++.  ..+|+|+++||+|+++.+.. +    +..+++...+..  
T Consensus        78 ~f~~~~~~~~~~aD~allVVda~~G~~~QT~~~~~~a~~~~~~~iIv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~  157 (196)
T d1d2ea3          78 DYVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQIGVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKGE  157 (196)
T ss_dssp             HHHHHHHHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCTT
T ss_pred             HHHHHHHHHHhhcCeEEEEEEcCCCCchhHHHHHHHHHHhcCCcEEEEEecccccccHHHHHHHHHHHHHHHHHhCCCcc
Confidence            45678889999999999999999987765555555443  45688889999999875432 1    233344434432  


Q ss_pred             CCcEEEeecCCCC--------CCCHHHHHHHHHHHhh
Q psy15351         74 ISEVIFTNCRNPN--------CKGVQKILPTLQHISD  102 (352)
Q Consensus        74 ~~~v~~iSa~~~~--------~~gi~~L~~~i~~~~~  102 (352)
                      ..+++++||+++.        -.++.+|++.|.+++|
T Consensus       158 ~~pii~iSa~~g~~~~~~~~~~~~~~~Lldai~~~iP  194 (196)
T d1d2ea3         158 ETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIP  194 (196)
T ss_dssp             TSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSC
T ss_pred             cCEEEEEEccccccccCcccccCCHHHHHHHHHhhCC
Confidence            1358999998750        0266777777776654

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=98.63  E-value=1.6e-08  Score=81.57  Aligned_cols=88  Identities=16%  Similarity=0.172  Sum_probs=64.0

Q ss_pred             hHHHHHHHHhhccCEEEEEEcCCCCCCCcCHHH-HHHHh---CCCCEEEEEEcccCCCccchHHHHHHHHhhcCCCCcEE
Q psy15351          3 RGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLL-QQSVQ---NIRPMVLVLNKRDLINSKHESLIEEKVRKEQSHISEVI   78 (352)
Q Consensus         3 ~~~~~~~~~i~~aD~vl~VvDar~p~~~~~~~l-~~~l~---~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~v~   78 (352)
                      ..++++......+|++++++|+..+.......+ .++++   .++|+++|+||+||.++....      .+..  ..+++
T Consensus        69 ~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~iilv~NK~Dl~~~~~~~------~~~~--~~~~~  140 (161)
T d2gj8a1          69 IGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETLGM------SEVN--GHALI  140 (161)
T ss_dssp             HHHHHHHHHHHTCSEEEEEEETTTCCCCSHHHHCHHHHHHSCTTCCEEEEEECHHHHCCCCEE------EEET--TEEEE
T ss_pred             HHHHHHHHHHHhccccceeeccccccchhhhhhhhhhhhhcccccceeeccchhhhhhhHHHH------HHhC--CCcEE
Confidence            345667788899999999999998765544333 23333   478999999999987654311      0111  12599


Q ss_pred             EeecCCCCCCCHHHHHHHHHHH
Q psy15351         79 FTNCRNPNCKGVQKILPTLQHI  100 (352)
Q Consensus        79 ~iSa~~~~~~gi~~L~~~i~~~  100 (352)
                      ++||+++  .|+++|+++|.+.
T Consensus       141 ~iSAk~~--~gi~~L~~~l~~~  160 (161)
T d2gj8a1         141 RLSARTG--EGVDVLRNHLKQS  160 (161)
T ss_dssp             ECCTTTC--TTHHHHHHHHHHH
T ss_pred             EEECCCC--CCHHHHHHHHHhh
Confidence            9999999  9999999998753

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=98.52  E-value=2e-07  Score=76.13  Aligned_cols=92  Identities=21%  Similarity=0.202  Sum_probs=62.0

Q ss_pred             HHHHHHhhccCEEEEEEcCCCCCCCcC--HHHHHHHh----CCCCEEEEEEcccCCCccchHHHHHHHHhhcC--CCCcE
Q psy15351          6 KDIEKHLKNVDIVIEVHDSRMPFTGRN--HLLQQSVQ----NIRPMVLVLNKRDLINSKHESLIEEKVRKEQS--HISEV   77 (352)
Q Consensus         6 ~~~~~~i~~aD~vl~VvDar~p~~~~~--~~l~~~l~----~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~--~~~~v   77 (352)
                      ......+..+|++++|+|+.++.+..+  ..+.....    .+.|+++|.||+|+.+........+.+.....  ...++
T Consensus        75 ~~~~~~~~~~~~ii~v~d~~d~~s~~~~~~~~~~~~~~~~~~~~pillv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  154 (176)
T d1fzqa_          75 PYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQI  154 (176)
T ss_dssp             HHHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEE
T ss_pred             hHHHHHhhccceeEEeeccccccchhhhhhhhhhhhhhhccCCCeEEEEEEeccccccccHHHHHHHHHHHHHHhcCCEE
Confidence            344567899999999999987543221  11222222    46899999999999877654444444321111  11247


Q ss_pred             EEeecCCCCCCCHHHHHHHHHH
Q psy15351         78 IFTNCRNPNCKGVQKILPTLQH   99 (352)
Q Consensus        78 ~~iSa~~~~~~gi~~L~~~i~~   99 (352)
                      +.+||+++  +|+++++++|.+
T Consensus       155 ~~~SA~tg--~gv~e~~~~l~~  174 (176)
T d1fzqa_         155 QSCSALTG--EGVQDGMNWVCK  174 (176)
T ss_dssp             EECCTTTC--TTHHHHHHHHHH
T ss_pred             EEEeCCCC--CCHHHHHHHHHh
Confidence            88999999  999999999865

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=98.52  E-value=2.4e-08  Score=82.47  Aligned_cols=66  Identities=21%  Similarity=0.271  Sum_probs=35.6

Q ss_pred             cceEEEEeCCCCCChHHHHHHHhCCCCCC-CCceecCCCCCceeEeeeeEEecCCCcEEEEeCCCCC
Q psy15351        167 YNTTVMVVGVPNVGKSSIINALRSSHMKK-GKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGIS  232 (352)
Q Consensus       167 ~~~~v~i~G~pnvGKStliN~l~~~~~~~-~~~~~~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~  232 (352)
                      +.++|+++|+||+|||||+|+|++..... ..........|.|...........+..+.++||||..
T Consensus         4 k~inIaiiG~~naGKSTL~n~L~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~~g~~   70 (179)
T d1wb1a4           4 KNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHA   70 (179)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSHH
T ss_pred             CCEEEEEEeCCCCcHHHHHHHHHHhcCceecccccceeeeeeeccccccccccCCcccccccccccc
Confidence            35789999999999999999999631100 0111122233444443333333445578899999853

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=98.52  E-value=8.3e-08  Score=79.28  Aligned_cols=96  Identities=15%  Similarity=0.164  Sum_probs=64.3

Q ss_pred             HHHHHHHhhccCEEEEEEcCCCCCCCcCHHHHH----HHh------CCCCEEEEEEcccCCCccchHHHHHHHHhhcCCC
Q psy15351          5 LKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQ----SVQ------NIRPMVLVLNKRDLINSKHESLIEEKVRKEQSHI   74 (352)
Q Consensus         5 ~~~~~~~i~~aD~vl~VvDar~p~~~~~~~l~~----~l~------~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~   74 (352)
                      .+++...+..++.++++++..............    ...      .++|+++|+||+|+.+....   .+.+.+.....
T Consensus        70 ~~~~l~~~~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ivv~NK~Dl~~~~~~---~~~~~~~~~~~  146 (185)
T d1lnza2          70 GHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAAEN---LEAFKEKLTDD  146 (185)
T ss_dssp             HHHHHHHHHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHHHH---HHHHHHHCCSC
T ss_pred             HHHHHHHHHHhhhhhheeeecccccchhhhhhhhhhhccchhhhhccCCcchhhccccchHhHHHH---HHHHHHHhccC
Confidence            356777889999999999877543332221111    111      36899999999999875422   12222221111


Q ss_pred             CcEEEeecCCCCCCCHHHHHHHHHHHhhhcc
Q psy15351         75 SEVIFTNCRNPNCKGVQKILPTLQHISDNMT  105 (352)
Q Consensus        75 ~~v~~iSa~~~~~~gi~~L~~~i~~~~~~~~  105 (352)
                      .+++++||+++  +|+++|++.|.+.+++.+
T Consensus       147 ~~v~~iSA~~g--~Gi~~L~~~i~~~L~~~p  175 (185)
T d1lnza2         147 YPVFPISAVTR--EGLRELLFEVANQLENTP  175 (185)
T ss_dssp             CCBCCCSSCCS--STTHHHHHHHHHHHTSCC
T ss_pred             CcEEEEECCCC--CCHHHHHHHHHHhhhhCC
Confidence            24899999999  999999999998887654

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=98.49  E-value=5.1e-08  Score=80.13  Aligned_cols=62  Identities=21%  Similarity=0.245  Sum_probs=31.9

Q ss_pred             CcceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCCcEEEEeCCCCC
Q psy15351        166 VYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGIS  232 (352)
Q Consensus       166 ~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~  232 (352)
                      ...++|+++|+||||||||+|+|++     .+........++|...........+......++++..
T Consensus        14 ~~~~~I~lvG~~NvGKSSL~n~L~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   75 (188)
T d1puia_          14 DTGIEVAFAGRSNAGKSSALNTLTN-----QKSLARTSKTPGRTQLINLFEVADGKRLVDLPGYGYA   75 (188)
T ss_dssp             SCSEEEEEEECTTSSHHHHHTTTCC-----C-------------CCEEEEEEETTEEEEECCCCC--
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHhC-----CCceEeecccccceeeccceecccccceeeeeccccc
Confidence            4568999999999999999999987     3444455555555544434444443333334444433

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=98.46  E-value=1.2e-07  Score=76.67  Aligned_cols=55  Identities=18%  Similarity=0.338  Sum_probs=38.5

Q ss_pred             ceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCCcEEEEeCCCC
Q psy15351        168 NTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGI  231 (352)
Q Consensus       168 ~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi  231 (352)
                      .++|+++|.||||||||+|+|.+.     ....++++-|.+...    ....+..+.++||||.
T Consensus         2 ~~ki~ivG~~~~GKTsLi~~l~~~-----~~~~~~~t~~~~~~~----~~~~~~~~~~~D~~G~   56 (165)
T d1ksha_           2 ELRLLMLGLDNAGKTTILKKFNGE-----DVDTISPTLGFNIKT----LEHRGFKLNIWDVGGQ   56 (165)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHTTC-----CCSSCCCCSSEEEEE----EEETTEEEEEEEECCS
T ss_pred             cEEEEEECCCCCCHHHHHHHHcCC-----CCCcccceEeeeeee----ccccccceeeeecCcc
Confidence            578999999999999999999873     333344444433321    1233446899999994

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=98.42  E-value=9.6e-08  Score=78.11  Aligned_cols=61  Identities=18%  Similarity=0.327  Sum_probs=44.6

Q ss_pred             ccCcceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCCcEEEEeCCCCCC
Q psy15351        164 TEVYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISL  233 (352)
Q Consensus       164 ~~~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~~  233 (352)
                      ...+.++|+++|.||||||||+|++.+     .....+.+..|++.....    ..+-.+.++|+||-..
T Consensus        12 ~~~~~~kI~vvG~~~vGKSsLi~~l~~-----~~~~~~~~~~~~~~~~i~----~~~~~~~i~d~~g~~~   72 (176)
T d1fzqa_          12 APDQEVRILLLGLDNAGKTTLLKQLAS-----EDISHITPTQGFNIKSVQ----SQGFKLNVWDIGGQRK   72 (176)
T ss_dssp             CCSSCEEEEEEESTTSSHHHHHHHHCC-----SCCEEEEEETTEEEEEEE----ETTEEEEEEECSSCGG
T ss_pred             CCCCEEEEEEECCCCCCHHHHHHHHhc-----CCCCcceeeeeeeEEEec----cCCeeEeEeecccccc
Confidence            345679999999999999999999987     444556666676654321    2234688999998654

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.40  E-value=1.4e-07  Score=76.73  Aligned_cols=59  Identities=19%  Similarity=0.292  Sum_probs=38.7

Q ss_pred             ceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecC-CCcEEEEeCCCC
Q psy15351        168 NTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISE-KPLIYILDTPGI  231 (352)
Q Consensus       168 ~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~-~~~~~l~DtPGi  231 (352)
                      -++|+++|.+|||||||+|++.+.    .-.....+.+|.+..... +.... .-.+.++||||-
T Consensus         5 ~~Ki~vvG~~~vGKTsLi~~l~~~----~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~wDt~G~   64 (169)
T d3raba_           5 MFKILIIGNSSVGKTSFLFRYADD----SFTPAFVSTVGIDFKVKT-IYRNDKRIKLQIWDTAGQ   64 (169)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS----CCCSSCCCCCSEEEEEEE-EEETTEEEEEEEEEECCS
T ss_pred             EEEEEEECCCCcCHHHHHHHHHcC----CCCcccccccccceeeEE-EEeecceEEEEEEECCCc
Confidence            478999999999999999999852    112334445555544322 22221 125788999994

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.39  E-value=2.4e-07  Score=73.93  Aligned_cols=55  Identities=16%  Similarity=0.290  Sum_probs=41.8

Q ss_pred             EEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCCcEEEEeCCCCCC
Q psy15351        170 TVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISL  233 (352)
Q Consensus       170 ~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~~  233 (352)
                      +|+++|.||||||||+|+|.+     +..+.+++..+++....    ...+....++||+|...
T Consensus         2 KI~liG~~nvGKSSLln~l~~-----~~~~~~~~t~~~~~~~~----~~~~~~~~~~~~~~~~~   56 (166)
T d2qtvb1           2 KLLFLGLDNAGKTTLLHMLKN-----DRLATLQPTWHPTSEEL----AIGNIKFTTFDLGGHIQ   56 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH-----SCCCCCCCCCSCEEEEE----CCTTCCEEEEECCCSGG
T ss_pred             EEEEECCCCCCHHHHHHHHhC-----CCCCeeeceeeEeEEEe----ccCCeeEEEEeeccchh
Confidence            689999999999999999997     45556677777666532    22344688999998754

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=98.37  E-value=1.4e-07  Score=79.50  Aligned_cols=67  Identities=18%  Similarity=0.149  Sum_probs=45.4

Q ss_pred             cceEEEEeCCCCCChHHHHHHHhCCC--CCC----CCceecCCCC-----CceeEeeeeEEecCCCcEEEEeCCCCCC
Q psy15351        167 YNTTVMVVGVPNVGKSSIINALRSSH--MKK----GKAVPVGPKA-----GVTRSVMSQVKISEKPLIYILDTPGISL  233 (352)
Q Consensus       167 ~~~~v~i~G~pnvGKStliN~l~~~~--~~~----~~~~~~~~~p-----g~T~~~~~~~~~~~~~~~~l~DtPGi~~  233 (352)
                      +.++|+++|.+++|||||+++|+...  ...    .........|     |+|.+.........+..+.|+||||..+
T Consensus         2 ~~ini~iiGhvd~GKSTL~~~Ll~~~g~~~~~~~~~~~~~~d~~~eE~~rgiTi~~~~~~~~~~~~~i~iiDtPGh~d   79 (204)
T d2c78a3           2 PHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHAD   79 (204)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGG
T ss_pred             CCeEEEEEeCCCCcHHHHHHHHHHHhhhccCCcchhhhhhcccchHHhcCCeEEEeeEEEEEeCCeEEEEEeCCCchh
Confidence            46899999999999999999996310  000    0011112222     8888776545556677899999999764

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.36  E-value=3.9e-07  Score=74.22  Aligned_cols=88  Identities=18%  Similarity=0.072  Sum_probs=62.7

Q ss_pred             HHhhccCEEEEEEcCCCCCCCcC--HHHHHHHh--CCCCEEEEEEcccCCCccchHHHHHHHHhhcCCCCcEEEeecCCC
Q psy15351         10 KHLKNVDIVIEVHDSRMPFTGRN--HLLQQSVQ--NIRPMVLVLNKRDLINSKHESLIEEKVRKEQSHISEVIFTNCRNP   85 (352)
Q Consensus        10 ~~i~~aD~vl~VvDar~p~~~~~--~~l~~~l~--~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~v~~iSa~~~   85 (352)
                      ..+..+|++++|.|+.++.+...  ..+....+  .+.|+++|.||+|+.......+...+.++.+..   ++.+||+++
T Consensus        71 ~~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~---~~e~Sak~~  147 (170)
T d1i2ma_          71 GYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQ---YYDISAKSN  147 (170)
T ss_dssp             GGTTTCCEEEEEEETTSGGGGTTHHHHHHHHHHHHCSCCEEEEEECCCCSCSCCTTTSHHHHSSCSSE---EEEEBTTTT
T ss_pred             hhcccccchhhccccccccccchhHHHHHHHhhccCCCceeeecchhhhhhhhhhhHHHHHHHHcCCE---EEEEeCCCC
Confidence            35788999999999998754332  22222222  578999999999998765444333444344554   889999999


Q ss_pred             CCCCHHHHHHHHHHHhh
Q psy15351         86 NCKGVQKILPTLQHISD  102 (352)
Q Consensus        86 ~~~gi~~L~~~i~~~~~  102 (352)
                        .|+++++.+|.+.+.
T Consensus       148 --~~v~e~f~~l~~~l~  162 (170)
T d1i2ma_         148 --YNFEKPFLWLARKLI  162 (170)
T ss_dssp             --BTTTHHHHHHHHHHH
T ss_pred             --CCHHHHHHHHHHHHc
Confidence              999999988876443

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=98.35  E-value=5.4e-07  Score=74.01  Aligned_cols=92  Identities=15%  Similarity=0.093  Sum_probs=62.0

Q ss_pred             HHhhccCEEEEEEcCCCCCCCcC--HHHHHHHh----CCCCEEEEEEcccCCCccchHHHHHHHHhhcCC--CCcEEEee
Q psy15351         10 KHLKNVDIVIEVHDSRMPFTGRN--HLLQQSVQ----NIRPMVLVLNKRDLINSKHESLIEEKVRKEQSH--ISEVIFTN   81 (352)
Q Consensus        10 ~~i~~aD~vl~VvDar~p~~~~~--~~l~~~l~----~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~--~~~v~~iS   81 (352)
                      .....+|++++|+|+.++.+...  ..+...++    .+.|+++|.||+|+.+.....+..+.+......  .-+++.+|
T Consensus        80 ~~~~~~~~ii~v~d~~d~~s~~~~~~~l~~~~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~e~S  159 (182)
T d1moza_          80 CYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKELNLVELKDRSWSIVASS  159 (182)
T ss_dssp             GTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCCCHHHHHHHTTTTTCCSSCEEEEEEB
T ss_pred             hhhccceeEEEEeeecccccchhHHHHHHHHHHhhccCCcceEEEEEeeccccccCHHHHHHHHHHHHHhhCCCEEEEEE
Confidence            35678999999999987654332  22333333    368999999999997654434444433111111  11478899


Q ss_pred             cCCCCCCCHHHHHHHHHHHhhh
Q psy15351         82 CRNPNCKGVQKILPTLQHISDN  103 (352)
Q Consensus        82 a~~~~~~gi~~L~~~i~~~~~~  103 (352)
                      |+++  +|+++++++|.+.+.+
T Consensus       160 A~~g--~gv~e~~~~l~~~i~~  179 (182)
T d1moza_         160 AIKG--EGITEGLDWLIDVIKE  179 (182)
T ss_dssp             GGGT--BTHHHHHHHHHHHHHH
T ss_pred             CCCC--CCHHHHHHHHHHHHHH
Confidence            9999  9999999999877654

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.33  E-value=4.9e-07  Score=73.01  Aligned_cols=85  Identities=15%  Similarity=0.132  Sum_probs=59.5

Q ss_pred             HHhhccCEEEEEEcCCCCCCCcCH--HHHHHHh--CCCCEEEEEEcccCCCccc--hHHHHHHHHhhcCCCCcEEEeecC
Q psy15351         10 KHLKNVDIVIEVHDSRMPFTGRNH--LLQQSVQ--NIRPMVLVLNKRDLINSKH--ESLIEEKVRKEQSHISEVIFTNCR   83 (352)
Q Consensus        10 ~~i~~aD~vl~VvDar~p~~~~~~--~l~~~l~--~~k~~ilVlNK~Dl~~~~~--~~~~~~~~~~~~~~~~~v~~iSa~   83 (352)
                      ..+..+|++++|.|..++.+..+-  .+.++.+  .+.|+++|.||+|+..+..  .++..++.++.+.+   ++.+||+
T Consensus        70 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~iilVgnK~Dl~~~~~v~~~~~~~~~~~~~~~---~~e~Sak  146 (164)
T d1z2aa1          70 AYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLR---FYRTSVK  146 (164)
T ss_dssp             HHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCSCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCE---EEECBTT
T ss_pred             hhhccCceEEEEEeccchhhhhhcccccccccccCCCceEEEeeccCCcccceeeeehhhHHHHHHcCCE---EEEeccC
Confidence            457899999999999876433221  1222222  5789999999999976533  23333444445655   8999999


Q ss_pred             CCCCCCHHHHHHHHHH
Q psy15351         84 NPNCKGVQKILPTLQH   99 (352)
Q Consensus        84 ~~~~~gi~~L~~~i~~   99 (352)
                      ++  .|++++++.|.+
T Consensus       147 ~g--~~v~e~f~~l~~  160 (164)
T d1z2aa1         147 ED--LNVSEVFKYLAE  160 (164)
T ss_dssp             TT--BSSHHHHHHHHH
T ss_pred             CC--cCHHHHHHHHHH
Confidence            99  999999988754

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.31  E-value=3.5e-07  Score=74.47  Aligned_cols=58  Identities=21%  Similarity=0.323  Sum_probs=37.2

Q ss_pred             ceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCC--cEEEEeCCCC
Q psy15351        168 NTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKP--LIYILDTPGI  231 (352)
Q Consensus       168 ~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~--~~~l~DtPGi  231 (352)
                      -++|+++|.+|||||||+|++.+.      .......|.++.+.........+.  .+.++||||-
T Consensus         5 ~~Ki~lvG~~~vGKTsLi~~l~~~------~f~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~   64 (171)
T d2ew1a1           5 LFKIVLIGNAGVGKTCLVRRFTQG------LFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQ   64 (171)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHS------SCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCS
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhC------CCCCcccccccceEEEEEEEECCEEEEEEEEECCCc
Confidence            378999999999999999999852      222333444444433222222222  4678999993

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.31  E-value=2.8e-07  Score=74.58  Aligned_cols=59  Identities=19%  Similarity=0.268  Sum_probs=34.1

Q ss_pred             eEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCC--cEEEEeCCCCCC
Q psy15351        169 TTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKP--LIYILDTPGISL  233 (352)
Q Consensus       169 ~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~--~~~l~DtPGi~~  233 (352)
                      ++|+++|.||||||||+|+++....    .....++.+.+.... .+ ..++.  .+.++||||-..
T Consensus         3 ~Ki~vvG~~~vGKTSli~~l~~~~~----~~~~~~t~~~~~~~~-~i-~~~~~~~~~~i~Dt~G~~~   63 (166)
T d1g16a_           3 MKILLIGDSGVGKSCLLVRFVEDKF----NPSFITTIGIDFKIK-TV-DINGKKVKLQIWDTAGQER   63 (166)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHCCC----CC-------CCEEEE-EE-ESSSCEEEEEEECCTTGGG
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCC----CCccCCccceeEEEE-EE-EECCEEEEEEEEECCCchh
Confidence            6899999999999999999986211    112222333222221 12 22232  466899999643

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.30  E-value=1.9e-07  Score=80.11  Aligned_cols=22  Identities=27%  Similarity=0.567  Sum_probs=20.2

Q ss_pred             eEEEEeCCCCCChHHHHHHHhC
Q psy15351        169 TTVMVVGVPNVGKSSIINALRS  190 (352)
Q Consensus       169 ~~v~i~G~pnvGKStliN~l~~  190 (352)
                      ..|+++|.||+|||||+|+|++
T Consensus         6 p~IaIiGh~d~GKSTL~~~L~~   27 (227)
T d1g7sa4           6 PIVSVLGHVDHGKTTLLDHIRG   27 (227)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEEeCCCccHHHHHHHHHh
Confidence            4499999999999999999986

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.30  E-value=2.8e-07  Score=75.53  Aligned_cols=63  Identities=22%  Similarity=0.313  Sum_probs=38.5

Q ss_pred             cceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecC-CCcEEEEeCCCCCCC
Q psy15351        167 YNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISE-KPLIYILDTPGISLP  234 (352)
Q Consensus       167 ~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~-~~~~~l~DtPGi~~~  234 (352)
                      +.++|+++|.+|||||||+|++.+.    .......+.++.+.... .+.... .-.+.++||||....
T Consensus         6 ~~iKi~vvG~~~vGKTsli~~l~~~----~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~Dt~G~~~~   69 (177)
T d1x3sa1           6 TTLKILIIGESGVGKSSLLLRFTDD----TFDPELAATIGVDFKVK-TISVDGNKAKLAIWDTAGQERF   69 (177)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHS----CCCTTCCCCCSEEEEEE-EEEETTEEEEEEEEEECSSGGG
T ss_pred             ceeEEEEECCCCcCHHHHHHHHHhC----CCCCccccceeecceeE-EEEEeccccEEEEEECCCchhh
Confidence            5689999999999999999999862    11112222233222221 222222 125789999997543

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.29  E-value=2.2e-06  Score=69.18  Aligned_cols=90  Identities=20%  Similarity=0.183  Sum_probs=62.1

Q ss_pred             HHHHhhccCEEEEEEcCCCCCCCcC-HHHHHHHh-----CCCCEEEEEEcccCCCccc-hHHHHHHHHhhcCCCCcEEEe
Q psy15351          8 IEKHLKNVDIVIEVHDSRMPFTGRN-HLLQQSVQ-----NIRPMVLVLNKRDLINSKH-ESLIEEKVRKEQSHISEVIFT   80 (352)
Q Consensus         8 ~~~~i~~aD~vl~VvDar~p~~~~~-~~l~~~l~-----~~k~~ilVlNK~Dl~~~~~-~~~~~~~~~~~~~~~~~v~~i   80 (352)
                      .......+|++++|.|..++.+... ..+...+.     .+.|+++|.||+|+..... .++..++.++.+..   ++.+
T Consensus        68 ~~~~~~~~~~~iiv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~---~~e~  144 (166)
T d1ctqa_          68 RDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLARSYGIP---YIET  144 (166)
T ss_dssp             HHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSSCCEEEEEECTTCSCCCSCHHHHHHHHHHHTCC---EEEC
T ss_pred             hhhhhhcccccceeecccccccHHHHHHHHHHHHHhcCCCCCeEEEEecccccccccccHHHHHHHHHHhCCe---EEEE
Confidence            3456789999999999987643322 11222221     3579999999999976543 23334444555665   8999


Q ss_pred             ecCCCCCCCHHHHHHHHHHHhh
Q psy15351         81 NCRNPNCKGVQKILPTLQHISD  102 (352)
Q Consensus        81 Sa~~~~~~gi~~L~~~i~~~~~  102 (352)
                      ||+++  .|+++++..|.+.+.
T Consensus       145 Sak~g--~gi~e~f~~i~~~i~  164 (166)
T d1ctqa_         145 SAKTR--QGVEDAFYTLVREIR  164 (166)
T ss_dssp             CTTTC--TTHHHHHHHHHHHHH
T ss_pred             cCCCC--cCHHHHHHHHHHHHH
Confidence            99999  999999988865543

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=98.28  E-value=1.2e-06  Score=71.26  Aligned_cols=92  Identities=16%  Similarity=0.043  Sum_probs=60.3

Q ss_pred             HHHHhhccCEEEEEEcCCCCCCCcC--HHHHHHHh----CCCCEEEEEEcccCCCccchHHHHHHHHhhcCCC--CcEEE
Q psy15351          8 IEKHLKNVDIVIEVHDSRMPFTGRN--HLLQQSVQ----NIRPMVLVLNKRDLINSKHESLIEEKVRKEQSHI--SEVIF   79 (352)
Q Consensus         8 ~~~~i~~aD~vl~VvDar~p~~~~~--~~l~~~l~----~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~--~~v~~   79 (352)
                      ....+..+|.+++|+|+.++.+..+  ..+...++    ...|+++|.||+|+.+.....+..+.+.......  -.++.
T Consensus        73 ~~~~~~~~~~ii~v~D~s~~~~~~~~~~~l~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~e  152 (173)
T d1e0sa_          73 WRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQP  152 (173)
T ss_dssp             HGGGTTTCCEEEEEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEE
T ss_pred             HHhhhcccceEEEEEecccchhHHHHHHHHHHHhhhcccccceeeeeeecccccccccHHHHHHHHHHHHHHhCCCEEEE
Confidence            3447889999999999976433221  22333332    4689999999999976544334433331111110  13677


Q ss_pred             eecCCCCCCCHHHHHHHHHHHh
Q psy15351         80 TNCRNPNCKGVQKILPTLQHIS  101 (352)
Q Consensus        80 iSa~~~~~~gi~~L~~~i~~~~  101 (352)
                      +||+++  +|+++++++|.+.+
T Consensus       153 ~SA~tg--~gv~e~~~~l~~~~  172 (173)
T d1e0sa_         153 SCATSG--DGLYEGLTWLTSNY  172 (173)
T ss_dssp             CBTTTT--BTHHHHHHHHHHHC
T ss_pred             eeCCCC--cCHHHHHHHHHHhc
Confidence            999999  99999999997643

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.27  E-value=1.1e-06  Score=71.54  Aligned_cols=91  Identities=16%  Similarity=0.173  Sum_probs=62.4

Q ss_pred             hhccCEEEEEEcCCCCCCCcCHHHHHHHhCCCCEEEEEEcccCCCccc-hHHHHHHHHhhcCCCCcEEEeecCCCCCCCH
Q psy15351         12 LKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKH-ESLIEEKVRKEQSHISEVIFTNCRNPNCKGV   90 (352)
Q Consensus        12 i~~aD~vl~VvDar~p~~~~~~~l~~~l~~~k~~ilVlNK~Dl~~~~~-~~~~~~~~~~~~~~~~~v~~iSa~~~~~~gi   90 (352)
                      ...+|+++++.|++............+.+...|.++|+||+|++.... .....+.+.+ .....+++++||+++  .|+
T Consensus        83 ~~~~~~~l~~~d~~~~~~~~~~~~~~l~~~~~~~i~v~~k~d~~~~~~~~~~~~~~~~~-~~~~~~~~~vSA~~g--~gi  159 (179)
T d1egaa1          83 IGDVELVIFVVEGTRWTPDDEMVLNKLREGKAPVILAVNKVDNVQEKADLLPHLQFLAS-QMNFLDIVPISAETG--LNV  159 (179)
T ss_dssp             CCCEEEEEEEEETTCCCHHHHHHHHHHHSSSSCEEEEEESTTTCCCHHHHHHHHHHHHT-TSCCSEEEECCTTTT--TTH
T ss_pred             hhhcceeEEEEecCccchhHHHHHHHhhhccCceeeeeeeeeccchhhhhhhHhhhhhh-hcCCCCEEEEeCcCC--CCH
Confidence            456889999999875443332222233335678999999999886542 2233333322 223347999999999  999


Q ss_pred             HHHHHHHHHHhhhcc
Q psy15351         91 QKILPTLQHISDNMT  105 (352)
Q Consensus        91 ~~L~~~i~~~~~~~~  105 (352)
                      ++|+++|.+.+++++
T Consensus       160 ~~L~~~i~~~lpe~~  174 (179)
T d1egaa1         160 DTIAAIVRKHLPEAT  174 (179)
T ss_dssp             HHHHHHHHTTCCBCC
T ss_pred             HHHHHHHHHhCCCCC
Confidence            999999999998764

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=98.26  E-value=1.5e-06  Score=69.95  Aligned_cols=90  Identities=16%  Similarity=0.045  Sum_probs=60.1

Q ss_pred             HHhhccCEEEEEEcCCCCCCCcC--HHHHHHHh----CCCCEEEEEEcccCCCccchHHHHHHHHhhcCC--CCcEEEee
Q psy15351         10 KHLKNVDIVIEVHDSRMPFTGRN--HLLQQSVQ----NIRPMVLVLNKRDLINSKHESLIEEKVRKEQSH--ISEVIFTN   81 (352)
Q Consensus        10 ~~i~~aD~vl~VvDar~p~~~~~--~~l~~~l~----~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~--~~~v~~iS   81 (352)
                      ..+..+|.+++|+|+.+......  ..+...+.    .+.|+++|+||+|+.+.....+..+.+......  .-+++.+|
T Consensus        65 ~~~~~~~~~i~v~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  144 (165)
T d1ksha_          65 NYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALELDSIRSHHWRIQGCS  144 (165)
T ss_dssp             GGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECC
T ss_pred             hhhhhhhcceeeeecccchhHHHHHHhhhhhhhhcccCCCceEEEEeccccccccCHHHHHHHHHhhhhhcCCCEEEEEE
Confidence            46788999999999876533222  22233332    468999999999997655444443333211111  11478899


Q ss_pred             cCCCCCCCHHHHHHHHHHHh
Q psy15351         82 CRNPNCKGVQKILPTLQHIS  101 (352)
Q Consensus        82 a~~~~~~gi~~L~~~i~~~~  101 (352)
                      |+++  +|+++++++|.+.+
T Consensus       145 a~~g--~gv~e~~~~l~~~i  162 (165)
T d1ksha_         145 AVTG--EDLLPGIDWLLDDI  162 (165)
T ss_dssp             TTTC--TTHHHHHHHHHHHH
T ss_pred             CCCC--CCHHHHHHHHHHHH
Confidence            9999  99999999987654

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.26  E-value=1e-06  Score=71.41  Aligned_cols=90  Identities=18%  Similarity=0.145  Sum_probs=61.6

Q ss_pred             HHHHhhccCEEEEEEcCCCCCCCcC-HHH-HHHHh-----CCCCEEEEEEcccCCCccc--hHHHHHHHHhhcCCCCcEE
Q psy15351          8 IEKHLKNVDIVIEVHDSRMPFTGRN-HLL-QQSVQ-----NIRPMVLVLNKRDLINSKH--ESLIEEKVRKEQSHISEVI   78 (352)
Q Consensus         8 ~~~~i~~aD~vl~VvDar~p~~~~~-~~l-~~~l~-----~~k~~ilVlNK~Dl~~~~~--~~~~~~~~~~~~~~~~~v~   78 (352)
                      .......+|++++|.|+.++.+..+ ..+ ..+.+     ...|+++|.||+|+.....  .++..++.++.+.+   ++
T Consensus        67 ~~~~~~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~v~~~e~~~~~~~~~~~---~~  143 (171)
T d2erxa1          67 QRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWKCA---FM  143 (171)
T ss_dssp             HHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCE---EE
T ss_pred             ccccccceeEEEEEeecccccchhcccchhhhhhhhhccCCCCcEEEEeecccccccccccHHHHHHHHHHcCCe---EE
Confidence            3456789999999999987643322 122 12211     4579999999999865432  23334444455665   88


Q ss_pred             EeecCCCCCCCHHHHHHHHHHHhh
Q psy15351         79 FTNCRNPNCKGVQKILPTLQHISD  102 (352)
Q Consensus        79 ~iSa~~~~~~gi~~L~~~i~~~~~  102 (352)
                      .+||+++  .|++++++.|.+++.
T Consensus       144 e~Sak~~--~~v~e~f~~l~~~~~  165 (171)
T d2erxa1         144 ETSAKLN--HNVKELFQELLNLEK  165 (171)
T ss_dssp             ECBTTTT--BSHHHHHHHHHHTCC
T ss_pred             EEcCCCC--cCHHHHHHHHHHHHH
Confidence            9999999  999999988876554

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=98.25  E-value=4.1e-07  Score=72.48  Aligned_cols=56  Identities=20%  Similarity=0.304  Sum_probs=35.5

Q ss_pred             eEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCCcEEEEeCCCCCC
Q psy15351        169 TTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISL  233 (352)
Q Consensus       169 ~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~~  233 (352)
                      ++|+++|.||||||||+|+|.+.     +..........+..    ......-.+.++|+||...
T Consensus         1 ikivlvG~~~vGKSsLi~~l~~~-----~~~~~~~~~~~~~~----~~~~~~~~~~~~d~~g~~~   56 (160)
T d1r8sa_           1 MRILMVGLDAAGKTTILYKLKLG-----EIVTTIPTIGFNVE----TVEYKNISFTVWDVGGQDK   56 (160)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH-----CSSCCCCCSSCCEE----EEECSSCEEEEEECCCCGG
T ss_pred             CEEEEECCCCCCHHHHHHHHhcC-----CCCccccceeeEEE----EEeeeeEEEEEecCCCccc
Confidence            57999999999999999999863     22121111111111    1122334688999999765

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.25  E-value=3.8e-07  Score=75.97  Aligned_cols=61  Identities=21%  Similarity=0.264  Sum_probs=40.1

Q ss_pred             ceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCC-CcEEEEeCCCCCC
Q psy15351        168 NTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEK-PLIYILDTPGISL  233 (352)
Q Consensus       168 ~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~-~~~~l~DtPGi~~  233 (352)
                      -++|+++|.+|||||||+|.+...    .-.....+..+++.... .+...+. -.+.++||||--.
T Consensus         6 ~~KivvvG~~~vGKTsli~~l~~~----~~~~~~~~t~~~~~~~~-~i~~~~~~~~l~i~Dt~G~e~   67 (194)
T d2bcgy1           6 LFKLLLIGNSGVGKSCLLLRFSDD----TYTNDYISTIGVDFKIK-TVELDGKTVKLQIWDTAGQER   67 (194)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHC----CCCTTCCCSSCCCEEEE-EEEETTEEEEEEEECCTTTTT
T ss_pred             EEEEEEECCCCcCHHHHHHHHhhC----CCCCCcCCccceeEEEE-EEEEeeEEEEEEEEECCCchh
Confidence            478999999999999999999862    12233445555554432 2222221 2577899999654

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=98.25  E-value=1.7e-06  Score=69.72  Aligned_cols=91  Identities=18%  Similarity=0.166  Sum_probs=61.4

Q ss_pred             HHHHhhccCEEEEEEcCCCCCCCcC--HHHHHHHh----CCCCEEEEEEcccCCCccchHHHHHHHHhhcCC--CCcEEE
Q psy15351          8 IEKHLKNVDIVIEVHDSRMPFTGRN--HLLQQSVQ----NIRPMVLVLNKRDLINSKHESLIEEKVRKEQSH--ISEVIF   79 (352)
Q Consensus         8 ~~~~i~~aD~vl~VvDar~p~~~~~--~~l~~~l~----~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~--~~~v~~   79 (352)
                      ....+..+|.+++|+|+.++.+...  ..+..+++    .+.|+++|.||.|+.......+..+.+......  ...++.
T Consensus        64 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pi~lv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~e  143 (164)
T d1zd9a1          64 WERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICCYS  143 (164)
T ss_dssp             HHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEE
T ss_pred             ccccccccchhhcccccccccccchhhhhhhhhhhhhcccCCcEEEEEeccccchhhhHHHHHHHHHHHHHHhCCCEEEE
Confidence            3456889999999999986532211  12223332    468999999999997655444444444222111  114788


Q ss_pred             eecCCCCCCCHHHHHHHHHHH
Q psy15351         80 TNCRNPNCKGVQKILPTLQHI  100 (352)
Q Consensus        80 iSa~~~~~~gi~~L~~~i~~~  100 (352)
                      +||+++  +|+++++++|.+.
T Consensus       144 ~Sa~~g--~gv~e~~~~l~~~  162 (164)
T d1zd9a1         144 ISCKEK--DNIDITLQWLIQH  162 (164)
T ss_dssp             CCTTTC--TTHHHHHHHHHHT
T ss_pred             EeCcCC--cCHHHHHHHHHHc
Confidence            999999  9999999998764

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.25  E-value=2.1e-06  Score=69.64  Aligned_cols=89  Identities=15%  Similarity=0.149  Sum_probs=63.1

Q ss_pred             HHHhhccCEEEEEEcCCCCCCCcC--HHHHHHHh----CCCCEEEEEEcccCCCccc--hHHHHHHHHhhcCCCCcEEEe
Q psy15351          9 EKHLKNVDIVIEVHDSRMPFTGRN--HLLQQSVQ----NIRPMVLVLNKRDLINSKH--ESLIEEKVRKEQSHISEVIFT   80 (352)
Q Consensus         9 ~~~i~~aD~vl~VvDar~p~~~~~--~~l~~~l~----~~k~~ilVlNK~Dl~~~~~--~~~~~~~~~~~~~~~~~v~~i   80 (352)
                      ...+..+|++++|.|..++.+...  ..+...++    ...|+++|.||+|+.....  .++..++.++.+.+   ++.+
T Consensus        71 ~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~---~~e~  147 (171)
T d2erya1          71 EQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDHQRQVTQEEGQQLARQLKVT---YMEA  147 (171)
T ss_dssp             HHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCSEEEEEECTTCTTSCSSCHHHHHHHHHHTTCE---EEEC
T ss_pred             cccccccceEEEeeccccccchhhHHHHhHHHHhhcccCCCCEEEEEeccchhhhccchHHHHHHHHHHcCCE---EEEE
Confidence            356788999999999987643322  11112222    4679999999999975532  34455555555665   8889


Q ss_pred             ecCCCCCCCHHHHHHHHHHHhh
Q psy15351         81 NCRNPNCKGVQKILPTLQHISD  102 (352)
Q Consensus        81 Sa~~~~~~gi~~L~~~i~~~~~  102 (352)
                      ||+++  .|+++++..|.+.+.
T Consensus       148 Sak~~--~~i~e~f~~l~~~i~  167 (171)
T d2erya1         148 SAKIR--MNVDQAFHELVRVIR  167 (171)
T ss_dssp             BTTTT--BSHHHHHHHHHHHHH
T ss_pred             cCCCC--cCHHHHHHHHHHHHH
Confidence            99999  999999998877664

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.24  E-value=6.8e-07  Score=75.00  Aligned_cols=57  Identities=19%  Similarity=0.325  Sum_probs=38.0

Q ss_pred             EEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCCcEEEEeCCCCC
Q psy15351        170 TVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGIS  232 (352)
Q Consensus       170 ~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~  232 (352)
                      +|+++|.||||||||+|+|++     .....+.+..+++.... .+....+..+.++||||..
T Consensus         2 ~V~ivG~~~~GKTsLl~~l~~-----~~~~~~~~t~~~~~~~~-~~~~~~~~~~~~~d~~g~~   58 (207)
T d2fh5b1           2 AVLFVGLCDSGKTLLFVRLLT-----GQYRDTQTSITDSSAIY-KVNNNRGNSLTLIDLPGHE   58 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH-----SCCCCBCCCCSCEEEEE-ECSSTTCCEEEEEECCCCH
T ss_pred             EEEEECCCCCCHHHHHHHHHc-----CCCCcccCCeeEEEEEE-EEeeeeeeeeeeeeccccc
Confidence            589999999999999999997     23333444444454432 1212233468899999953

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=98.23  E-value=1.2e-06  Score=71.04  Aligned_cols=88  Identities=15%  Similarity=0.136  Sum_probs=61.4

Q ss_pred             HHHhhccCEEEEEEcCCCCCCCcC--HHHHHHHh----CCCCEEEEEEcccCCCccc--hHHHHHHHHhhcCCCCcEEEe
Q psy15351          9 EKHLKNVDIVIEVHDSRMPFTGRN--HLLQQSVQ----NIRPMVLVLNKRDLINSKH--ESLIEEKVRKEQSHISEVIFT   80 (352)
Q Consensus         9 ~~~i~~aD~vl~VvDar~p~~~~~--~~l~~~l~----~~k~~ilVlNK~Dl~~~~~--~~~~~~~~~~~~~~~~~v~~i   80 (352)
                      ...+..+|.+++|.|..++.+...  ..+.++.+    .+.|+++|.||+|+.....  .++..++.++.+..   ++.+
T Consensus        70 ~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiivgnK~Dl~~~~~v~~~~~~~~~~~~~~~---~~e~  146 (168)
T d1u8za_          70 DNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVN---YVET  146 (168)
T ss_dssp             HHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCE---EEEC
T ss_pred             hhcccccceeEEEeeccchhhhhhHHHHHHHHHHhhCCCCCcEEEEeccccccccccccHHHHHHHHHHcCCe---EEEE
Confidence            356789999999999987543322  11112222    4679999999999865432  34555555566665   8899


Q ss_pred             ecCCCCCCCHHHHHHHHHHHh
Q psy15351         81 NCRNPNCKGVQKILPTLQHIS  101 (352)
Q Consensus        81 Sa~~~~~~gi~~L~~~i~~~~  101 (352)
                      ||+++  .|++++++.|.+.+
T Consensus       147 Sak~g--~gv~e~f~~l~~~i  165 (168)
T d1u8za_         147 SAKTR--ANVDKVFFDLMREI  165 (168)
T ss_dssp             CTTTC--TTHHHHHHHHHHHH
T ss_pred             cCCCC--cCHHHHHHHHHHHH
Confidence            99999  99999988776543

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.23  E-value=1.3e-06  Score=70.34  Aligned_cols=89  Identities=15%  Similarity=0.111  Sum_probs=63.0

Q ss_pred             HHHhhccCEEEEEEcCCCCCCCcC--HHHHHHHh---CCCCEEEEEEcccCCCccc--hHHHHHHHHhhcCCCCcEEEee
Q psy15351          9 EKHLKNVDIVIEVHDSRMPFTGRN--HLLQQSVQ---NIRPMVLVLNKRDLINSKH--ESLIEEKVRKEQSHISEVIFTN   81 (352)
Q Consensus         9 ~~~i~~aD~vl~VvDar~p~~~~~--~~l~~~l~---~~k~~ilVlNK~Dl~~~~~--~~~~~~~~~~~~~~~~~v~~iS   81 (352)
                      ...+..+|++++|.|..++.+...  ..+.....   ...|+++|.||+|+.+...  .++..++.++.+..   ++.+|
T Consensus        67 ~~~~~~~~~~ilv~d~~~~~s~~~i~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~---~~e~S  143 (164)
T d1yzqa1          67 PSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVM---FIETS  143 (164)
T ss_dssp             HHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCE---EEECC
T ss_pred             HHHhhccceEEEeeccccccchhhhHhhHHHHHHhcCCCceEEEEecccchhhhhhhhHHHHHHHHHHcCCE---EEEec
Confidence            346889999999999987644332  11212211   4678999999999975433  34444555555554   88999


Q ss_pred             cCCCCCCCHHHHHHHHHHHhh
Q psy15351         82 CRNPNCKGVQKILPTLQHISD  102 (352)
Q Consensus        82 a~~~~~~gi~~L~~~i~~~~~  102 (352)
                      |+++  .|++++++.|.+.++
T Consensus       144 Ak~g--~~v~e~f~~i~~~l~  162 (164)
T d1yzqa1         144 AKAG--YNVKQLFRRVAAALP  162 (164)
T ss_dssp             TTTC--TTHHHHHHHHHHHSC
T ss_pred             CCCC--cCHHHHHHHHHHhhC
Confidence            9999  999999999987665

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.22  E-value=1e-06  Score=71.47  Aligned_cols=61  Identities=20%  Similarity=0.273  Sum_probs=35.7

Q ss_pred             ceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCC--cEEEEeCCCCCC
Q psy15351        168 NTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKP--LIYILDTPGISL  233 (352)
Q Consensus       168 ~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~--~~~l~DtPGi~~  233 (352)
                      .++|+++|.+|||||||++++.....   .........+.+.... .+.. .+.  .+.++||||-..
T Consensus         6 ~fKi~vvG~~~vGKTsli~~~~~~~~---~~~~~~~~~~~~~~~~-~~~~-~~~~~~l~i~Dt~G~e~   68 (170)
T d2g6ba1           6 AFKVMLVGDSGVGKTCLLVRFKDGAF---LAGTFISTVGIDFRNK-VLDV-DGVKVKLQMWDTAGQER   68 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCC---CCCCCCCCCSCEEEEE-EEEE-TTEEEEEEEEECCCC--
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCC---CcccccceeeeeeEEE-EEEe-cCcEEEEEEEECCCchh
Confidence            47899999999999999999975210   0111122223333221 2222 222  577999999643

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.21  E-value=7e-07  Score=72.07  Aligned_cols=62  Identities=23%  Similarity=0.221  Sum_probs=38.9

Q ss_pred             ceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecC-CCcEEEEeCCCCCCC
Q psy15351        168 NTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISE-KPLIYILDTPGISLP  234 (352)
Q Consensus       168 ~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~-~~~~~l~DtPGi~~~  234 (352)
                      .++|+++|.||||||||+|++.+.    .......++.+.+..... ....+ .-.+.++||||-...
T Consensus         2 ~iKv~liG~~~vGKSsLi~rl~~~----~~~~~~~~ti~~~~~~~~-~~~~~~~~~~~i~d~~g~~~~   64 (164)
T d1z2aa1           2 AIKMVVVGNGAVGKSSMIQRYCKG----IFTKDYKKTIGVDFLERQ-IQVNDEDVRLMLWDTAGQEEF   64 (164)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHC----CCCCCSSCCCSSSEEEEE-EEETTEEEEEEEECCTTGGGT
T ss_pred             eEEEEEECCCCcCHHHHHHHHHhC----CCCcccccccccccceee-eeecCceeeeeeeccCCccch
Confidence            378999999999999999999852    112223344444333221 11111 125789999997654

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.21  E-value=1.6e-06  Score=70.26  Aligned_cols=89  Identities=18%  Similarity=0.064  Sum_probs=59.6

Q ss_pred             HHHhhccCEEEEEEcCCCCCCCcC-HHHH-HHHh----CCCCEEEEEEcccCCCccc--hHHHHHHHHhhcCCCCcEEEe
Q psy15351          9 EKHLKNVDIVIEVHDSRMPFTGRN-HLLQ-QSVQ----NIRPMVLVLNKRDLINSKH--ESLIEEKVRKEQSHISEVIFT   80 (352)
Q Consensus         9 ~~~i~~aD~vl~VvDar~p~~~~~-~~l~-~~l~----~~k~~ilVlNK~Dl~~~~~--~~~~~~~~~~~~~~~~~v~~i   80 (352)
                      ...+..+|++++|.|..++.+..+ ..+. ++..    ...|+++|.||+|+.....  ..+..++.+..+..   ++.+
T Consensus        66 ~~~~~~~d~~ilv~d~t~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~---~~e~  142 (168)
T d2gjsa1          66 GHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCK---FIET  142 (168)
T ss_dssp             HHHHTSCSEEEEEEETTCHHHHHHHHHHHHHHHHHCC--CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTSE---EEEC
T ss_pred             ccchhhhhhhceeccccccccccccccccchhhcccccccceEEEeecccchhhhcchhHHHHHHHHHhcCCE---EEEE
Confidence            346789999999999987643221 1111 1211    3468999999999976533  23333333445654   8899


Q ss_pred             ecCCCCCCCHHHHHHHHHHHhh
Q psy15351         81 NCRNPNCKGVQKILPTLQHISD  102 (352)
Q Consensus        81 Sa~~~~~~gi~~L~~~i~~~~~  102 (352)
                      ||+++  .|+++++..|.+.+.
T Consensus       143 Sak~~--~~v~~~f~~l~~~i~  162 (168)
T d2gjsa1         143 SAALH--HNVQALFEGVVRQIR  162 (168)
T ss_dssp             BTTTT--BSHHHHHHHHHHHHH
T ss_pred             eCCCC--cCHHHHHHHHHHHHH
Confidence            99999  999999988865543

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.21  E-value=7e-07  Score=73.50  Aligned_cols=62  Identities=19%  Similarity=0.172  Sum_probs=39.3

Q ss_pred             eEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCCcEEEEeCCCCCCC
Q psy15351        169 TTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLP  234 (352)
Q Consensus       169 ~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~~~  234 (352)
                      ++|+++|.+|||||||+|++.+.    +-.....++.|.+............-.+.++||||....
T Consensus         3 ~Kv~vvG~~~vGKSSLi~~l~~~----~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~   64 (184)
T d1vg8a_           3 LKVIILGDSGVGKTSLMNQYVNK----KFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERF   64 (184)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHS----CCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGG
T ss_pred             EEEEEECCCCcCHHHHHHHHHhC----CCCCCcCCccceeeeeeeeeeCCceEEEEeeecCCcccc
Confidence            68999999999999999999862    112223344555444322111111225788999996653

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.21  E-value=1.5e-06  Score=70.83  Aligned_cols=90  Identities=17%  Similarity=0.103  Sum_probs=61.8

Q ss_pred             HHHhhccCEEEEEEcCCCCCCCcC--HHHHHHHh----CCCCEEEEEEcccCCCccc--hHHHHHHHHhhcCCCCcEEEe
Q psy15351          9 EKHLKNVDIVIEVHDSRMPFTGRN--HLLQQSVQ----NIRPMVLVLNKRDLINSKH--ESLIEEKVRKEQSHISEVIFT   80 (352)
Q Consensus         9 ~~~i~~aD~vl~VvDar~p~~~~~--~~l~~~l~----~~k~~ilVlNK~Dl~~~~~--~~~~~~~~~~~~~~~~~v~~i   80 (352)
                      ...+..+|++++|.|..++.+...  ..+..+.+    .+.|+++|.||+|+.....  ..+..++.++.+..   ++.+
T Consensus        72 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~---~~e~  148 (173)
T d2fn4a1          72 EQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVA---YFEA  148 (173)
T ss_dssp             HHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCE---EEEC
T ss_pred             chhhccceeeeeecccccccccchhhhhhHHHHHHhccCCCceEEEEEeechhhccccchhhhhHHHHhcCCE---EEEE
Confidence            346788999999999987643221  11111221    4579999999999865432  23444444555654   8889


Q ss_pred             ecCCCCCCCHHHHHHHHHHHhhh
Q psy15351         81 NCRNPNCKGVQKILPTLQHISDN  103 (352)
Q Consensus        81 Sa~~~~~~gi~~L~~~i~~~~~~  103 (352)
                      ||+++  .|++++++.|.+.+..
T Consensus       149 Sak~g--~gv~e~f~~l~~~i~k  169 (173)
T d2fn4a1         149 SAKLR--LNVDEAFEQLVRAVRK  169 (173)
T ss_dssp             BTTTT--BSHHHHHHHHHHHHHH
T ss_pred             eCCCC--cCHHHHHHHHHHHHHH
Confidence            99999  9999999988776543

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.20  E-value=3.2e-06  Score=68.45  Aligned_cols=88  Identities=23%  Similarity=0.234  Sum_probs=62.5

Q ss_pred             HHHhhccCEEEEEEcCCCCCCCcC--HHHHHHHh----CCCCEEEEEEcccCCCccc--hHHHHHHHHhhcCCCCcEEEe
Q psy15351          9 EKHLKNVDIVIEVHDSRMPFTGRN--HLLQQSVQ----NIRPMVLVLNKRDLINSKH--ESLIEEKVRKEQSHISEVIFT   80 (352)
Q Consensus         9 ~~~i~~aD~vl~VvDar~p~~~~~--~~l~~~l~----~~k~~ilVlNK~Dl~~~~~--~~~~~~~~~~~~~~~~~v~~i   80 (352)
                      ...+..+|++++|.|..++-+..+  ..+.++.+    .+.|+++|.||+|+.....  .++..++.++.+..   ++.+
T Consensus        70 ~~~~~~~~~~llv~d~~d~~Sf~~~~~~~~~i~~~~~~~~~p~ilvgnK~Dl~~~~~v~~e~~~~~~~~~~~~---~~e~  146 (169)
T d1x1ra1          70 EQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIP---YIET  146 (169)
T ss_dssp             HHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTCC---EEEE
T ss_pred             hhhhhhccEEEEecccccchhhhccchhhHHHHhhccccCccEEEEecccchhhhceeehhhHHHHHHHcCCE---EEEE
Confidence            346789999999999987644332  12222222    4679999999999976543  24555666666766   8999


Q ss_pred             ecCCCCCC-CHHHHHHHHHHHh
Q psy15351         81 NCRNPNCK-GVQKILPTLQHIS  101 (352)
Q Consensus        81 Sa~~~~~~-gi~~L~~~i~~~~  101 (352)
                      ||+++  . |+++++..|.+.+
T Consensus       147 Sak~~--~~nV~~~F~~l~~~i  166 (169)
T d1x1ra1         147 SAKDP--PLNVDKTFHDLVRVI  166 (169)
T ss_dssp             BCSSS--CBSHHHHHHHHHHHH
T ss_pred             cCCCC--CcCHHHHHHHHHHHH
Confidence            99987  6 9999988876554

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=98.20  E-value=3e-06  Score=72.06  Aligned_cols=88  Identities=11%  Similarity=0.058  Sum_probs=61.3

Q ss_pred             hHHHHHHHHhhccCEEEEEEcCCCCCCCcCHHHHHHHh-CC-CCEEEEEEcccCCCccc------hHHHHHHHHhhcCCC
Q psy15351          3 RGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQ-NI-RPMVLVLNKRDLINSKH------ESLIEEKVRKEQSHI   74 (352)
Q Consensus         3 ~~~~~~~~~i~~aD~vl~VvDar~p~~~~~~~l~~~l~-~~-k~~ilVlNK~Dl~~~~~------~~~~~~~~~~~~~~~   74 (352)
                      ..+..+...+..+|++++|+||..++.....+...++. .+ +.+++++||+|+++...      ..+...++.+.++..
T Consensus       101 dfv~~~~~g~~~aD~ailVvda~~G~~~Qt~e~~~~~~~~gv~~iiv~vNK~D~~~~~~~~~~~~~~~l~~~~~~~~~~~  180 (222)
T d1zunb3         101 QYTRNMATGASTCDLAIILVDARYGVQTQTRRHSYIASLLGIKHIVVAINKMDLNGFDERVFESIKADYLKFAEGIAFKP  180 (222)
T ss_dssp             GGHHHHHHHHTTCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEEECTTTTTSCHHHHHHHHHHHHHHHHTTTCCC
T ss_pred             hhhhhhccccccCceEEEEeccccCcccchHHHHHHHHHcCCCEEEEEEEccccccccceehhhhHHHHhhhhHhhccCC
Confidence            45678888999999999999999887665555444444 45 55889999999987442      122333444444432


Q ss_pred             C--cEEEeecCCCCCCCHHH
Q psy15351         75 S--EVIFTNCRNPNCKGVQK   92 (352)
Q Consensus        75 ~--~v~~iSa~~~~~~gi~~   92 (352)
                      .  +++++||.+|  .|+.+
T Consensus       181 ~~i~~IPiSA~~G--~ni~~  198 (222)
T d1zunb3         181 TTMAFVPMSALKG--DNVVN  198 (222)
T ss_dssp             SEEEEEECCTTTC--TTTSS
T ss_pred             CceEEEEEEcccC--ccCCc
Confidence            3  3578999999  88643

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.18  E-value=1.1e-06  Score=71.04  Aligned_cols=59  Identities=17%  Similarity=0.198  Sum_probs=36.4

Q ss_pred             ceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCC--cEEEEeCCCCC
Q psy15351        168 NTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKP--LIYILDTPGIS  232 (352)
Q Consensus       168 ~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~--~~~l~DtPGi~  232 (352)
                      -++|+++|.+|||||||+|++.+.     . ......|.++.+........++.  .+.++||||-.
T Consensus         4 ~~KivlvG~~~vGKTsli~~~~~~-----~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~g~~   64 (166)
T d1z0fa1           4 IFKYIIIGDMGVGKSCLLHQFTEK-----K-FMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQE   64 (166)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS-----C-CCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGG
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhC-----C-CCCcccccccccceeEEEEECCEEEEEEEeccCCch
Confidence            378999999999999999999862     1 11122233332222222222222  57889999954

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=98.17  E-value=1.2e-06  Score=71.20  Aligned_cols=60  Identities=20%  Similarity=0.325  Sum_probs=41.7

Q ss_pred             CcceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCCcEEEEeCCCCCCC
Q psy15351        166 VYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLP  234 (352)
Q Consensus       166 ~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~~~  234 (352)
                      ++.++|+++|.||||||||+|+|.+     .+...+....+++.....    ..+..+.++|++|-...
T Consensus        13 ~k~~kI~vvG~~~~GKSsLi~rl~~-----~~~~~~~~~~~~~~~~~~----~~~~~~~~~d~~~~~~~   72 (177)
T d1zj6a1          13 HQEHKVIIVGLDNAGKTTILYQFSM-----NEVVHTSPTIGSNVEEIV----INNTRFLMWDIGGQESL   72 (177)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHHT-----TSCEEEECCSCSSCEEEE----ETTEEEEEEECCC----
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHhc-----CCCCccccccceeEEEEe----ecceEEEEecccccccc
Confidence            4568999999999999999999997     455566666665544321    22346889999987654

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.17  E-value=2e-06  Score=69.65  Aligned_cols=87  Identities=10%  Similarity=0.015  Sum_probs=60.4

Q ss_pred             HhhccCEEEEEEcCCCCCCCcC-HHHHHHHh----CCCCEEEEEEcccCCCccc--hHHHHHHHHhhcCCCCcEEEeecC
Q psy15351         11 HLKNVDIVIEVHDSRMPFTGRN-HLLQQSVQ----NIRPMVLVLNKRDLINSKH--ESLIEEKVRKEQSHISEVIFTNCR   83 (352)
Q Consensus        11 ~i~~aD~vl~VvDar~p~~~~~-~~l~~~l~----~~k~~ilVlNK~Dl~~~~~--~~~~~~~~~~~~~~~~~v~~iSa~   83 (352)
                      .+..+|++|+|.|+.++.+... ..+.....    ...|+++|.||+|+.....  .++..++.++.+.+   ++.+||+
T Consensus        74 ~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~v~~~~~~~~~~~~~~~---~~e~Sak  150 (169)
T d3raba_          74 YYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFE---FFEASAK  150 (169)
T ss_dssp             TTTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCSCCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCE---EEECBTT
T ss_pred             HHhcCCEEEEEEECccchhhhhhhhhhhhhhcccCCcceEEEEEeecccccccccchhhhHHHHHHcCCE---EEEecCC
Confidence            5889999999999987643322 11222121    4577888999999875433  23334444455665   9999999


Q ss_pred             CCCCCCHHHHHHHHHHHhh
Q psy15351         84 NPNCKGVQKILPTLQHISD  102 (352)
Q Consensus        84 ~~~~~gi~~L~~~i~~~~~  102 (352)
                      ++  .|++++++.+.+.+.
T Consensus       151 ~g--~gv~e~f~~l~~~i~  167 (169)
T d3raba_         151 DN--INVKQTFERLVDVIC  167 (169)
T ss_dssp             TT--BSHHHHHHHHHHHHH
T ss_pred             CC--cCHHHHHHHHHHHHh
Confidence            99  999999998876653

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=98.17  E-value=5.5e-07  Score=73.39  Aligned_cols=59  Identities=19%  Similarity=0.332  Sum_probs=40.1

Q ss_pred             CcceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCCcEEEEeCCCCCC
Q psy15351        166 VYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISL  233 (352)
Q Consensus       166 ~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~~  233 (352)
                      .+.++|+++|.||||||||+|++.+     .......++.|.+..    ......-.+.++||||...
T Consensus        10 ~k~~kIvlvG~~~vGKTSli~rl~~-----~~~~~~~~t~~~~~~----~~~~~~~~~~i~D~~g~~~   68 (173)
T d1e0sa_          10 NKEMRILMLGLDAAGKTTILYKLKL-----GQSVTTIPTVGFNVE----TVTYKNVKFNVWDVGGQDK   68 (173)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHTTC-----CCCEEEEEETTEEEE----EEEETTEEEEEEEESCCGG
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHhc-----CCCCCccceeeeeEE----EeeccceeeEEecCCCcch
Confidence            3569999999999999999999986     333333333443322    2222334688999999654

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=98.16  E-value=9.5e-07  Score=73.59  Aligned_cols=25  Identities=24%  Similarity=0.371  Sum_probs=22.7

Q ss_pred             CcceEEEEeCCCCCChHHHHHHHhC
Q psy15351        166 VYNTTVMVVGVPNVGKSSIINALRS  190 (352)
Q Consensus       166 ~~~~~v~i~G~pnvGKStliN~l~~  190 (352)
                      .+.++|+++|.+++|||||+|+|++
T Consensus         3 ~~~inIaiiGhvd~GKSTL~~~L~g   27 (195)
T d1kk1a3           3 QAEVNIGMVGHVDHGKTTLTKALTG   27 (195)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHT
T ss_pred             CCcEEEEEEeccCCcHHHHHHHHHh
Confidence            3568999999999999999999986

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=98.16  E-value=9.5e-07  Score=71.24  Aligned_cols=56  Identities=20%  Similarity=0.310  Sum_probs=36.4

Q ss_pred             ceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCCcEEEEeCCCC
Q psy15351        168 NTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGI  231 (352)
Q Consensus       168 ~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi  231 (352)
                      .++|+++|.+|||||||+|++.....    .....++-|.+...    ....+..+.++||||-
T Consensus         2 e~ki~i~G~~~~GKTsLl~~l~~~~~----~~~~~~T~~~~~~~----~~~~~~~~~i~D~~G~   57 (164)
T d1zd9a1           2 EMELTLVGLQYSGKTTFVNVIASGQF----NEDMIPTVGFNMRK----ITKGNVTIKLWDIGGQ   57 (164)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCC----CCSCCCCCSEEEEE----EEETTEEEEEEEECCS
T ss_pred             eEEEEEECCCCCCHHHHHHHHHcCCC----CCcccccceeeeee----eeeeeEEEEEeecccc
Confidence            47899999999999999999986321    11222333332221    1223446889999994

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=98.15  E-value=8.3e-07  Score=72.86  Aligned_cols=60  Identities=18%  Similarity=0.345  Sum_probs=40.3

Q ss_pred             CcceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCCcEEEEeCCCCCCC
Q psy15351        166 VYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLP  234 (352)
Q Consensus       166 ~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~~~  234 (352)
                      .+.++|+++|.||||||||++++.+     .......++.|.+....    ...+-.+.++||||....
T Consensus        15 ~k~~KI~lvG~~~vGKTsLi~~l~~-----~~~~~~~~t~~~~~~~~----~~~~~~~~i~D~~g~~~~   74 (182)
T d1moza_          15 NKELRILILGLDGAGKTTILYRLQI-----GEVVTTKPTIGFNVETL----SYKNLKLNVWDLGGQTSI   74 (182)
T ss_dssp             SSCEEEEEEEETTSSHHHHHHHTCC-----SEEEEECSSTTCCEEEE----EETTEEEEEEEEC----C
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhc-----CCCCccccccceEEEEE----eeCCEEEEEEeccccccc
Confidence            4679999999999999999999986     34445555555544322    223446889999998653

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=98.15  E-value=1.5e-06  Score=69.52  Aligned_cols=59  Identities=19%  Similarity=0.350  Sum_probs=40.5

Q ss_pred             cceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCCcEEEEeCCCCCCC
Q psy15351        167 YNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLP  234 (352)
Q Consensus       167 ~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~~~  234 (352)
                      +.++|+++|.||||||||+|++.+     .....+.+..+.+..    .....+..+.++|+||....
T Consensus         4 ke~kI~ivG~~~vGKSSLi~~~~~-----~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~   62 (169)
T d1upta_           4 REMRILILGLDGAGKTTILYRLQV-----GEVVTTIPTIGFNVE----TVTYKNLKFQVWDLGGLTSI   62 (169)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHH-----SSCCCCCCCSSEEEE----EEEETTEEEEEEEECCCGGG
T ss_pred             cceEEEEECCCCCCHHHHHHHHhC-----CCCcceecccceeee----eeccCceEEEEeeccccccc
Confidence            458999999999999999999997     333344444443322    22333446888999987653

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.15  E-value=2e-06  Score=70.02  Aligned_cols=87  Identities=17%  Similarity=0.086  Sum_probs=58.7

Q ss_pred             HhhccCEEEEEEcCCCCCCCcC-HHHH-HHHh----CCCCEEEEEEcccCCCccc--hHHHHHHHHhhcCCCCcEEEeec
Q psy15351         11 HLKNVDIVIEVHDSRMPFTGRN-HLLQ-QSVQ----NIRPMVLVLNKRDLINSKH--ESLIEEKVRKEQSHISEVIFTNC   82 (352)
Q Consensus        11 ~i~~aD~vl~VvDar~p~~~~~-~~l~-~~l~----~~k~~ilVlNK~Dl~~~~~--~~~~~~~~~~~~~~~~~v~~iSa   82 (352)
                      .+..+|++|+|.|..++.+..+ ..+. .+..    ...|+++|.||+||.+...  .++..++-...+.+   ++.+||
T Consensus        74 ~~~~~~~~ilvfd~t~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~---~~e~Sa  150 (172)
T d2g3ya1          74 CMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCK---FIETSA  150 (172)
T ss_dssp             CCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCE---EEECBT
T ss_pred             cccccceeeeeecccccchhhhhhhhhhhhhhccccCCceEEEEeccccccccccccHHHHHHHHHHcCCe---EEEEeC
Confidence            4688999999999986533221 1111 1221    3679999999999875432  23333333444654   888999


Q ss_pred             CCCCCCCHHHHHHHHHHHhh
Q psy15351         83 RNPNCKGVQKILPTLQHISD  102 (352)
Q Consensus        83 ~~~~~~gi~~L~~~i~~~~~  102 (352)
                      +++  .|+++++..|.+.+.
T Consensus       151 k~g--~~i~~~f~~l~~~i~  168 (172)
T d2g3ya1         151 AVQ--HNVKELFEGIVRQVR  168 (172)
T ss_dssp             TTT--BSHHHHHHHHHHHHH
T ss_pred             CCC--cCHHHHHHHHHHHHH
Confidence            999  999999988776543

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.14  E-value=4.9e-06  Score=68.30  Aligned_cols=86  Identities=17%  Similarity=0.108  Sum_probs=60.5

Q ss_pred             HHhhccCEEEEEEcCCCCCCCcCHHHHHHHh--------CCCCEEEEEEcccCCCccc--hHHHHHHHHhhcCCCCcEEE
Q psy15351         10 KHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQ--------NIRPMVLVLNKRDLINSKH--ESLIEEKVRKEQSHISEVIF   79 (352)
Q Consensus        10 ~~i~~aD~vl~VvDar~p~~~~~~~l~~~l~--------~~k~~ilVlNK~Dl~~~~~--~~~~~~~~~~~~~~~~~v~~   79 (352)
                      ..+.++|.+|+|.|+.++.+.  ..+..+..        ...|+++|.||+|+.....  .++..++.++.+..   ++.
T Consensus        83 ~~~~~~~~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~v~~~e~~~~~~~~~~~---~~e  157 (186)
T d2f7sa1          83 AFFRDAMGFLLMFDLTSQQSF--LNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADKYGIP---YFE  157 (186)
T ss_dssp             HHHTTCCEEEEEEETTCHHHH--HHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCC---EEE
T ss_pred             HHHhcCCEEEEEEeccccccc--eeeeeccchhhhhccCCCceEEEEeeeccchhhhcchHHHHHHHHHHcCCE---EEE
Confidence            357899999999998765322  22333332        2457889999999975433  23344455555665   899


Q ss_pred             eecCCCCCCCHHHHHHHHHHHhh
Q psy15351         80 TNCRNPNCKGVQKILPTLQHISD  102 (352)
Q Consensus        80 iSa~~~~~~gi~~L~~~i~~~~~  102 (352)
                      +||+++  .|++++++++.+.+.
T Consensus       158 ~Sak~~--~~i~e~f~~l~~~i~  178 (186)
T d2f7sa1         158 TSAATG--QNVEKAVETLLDLIM  178 (186)
T ss_dssp             EBTTTT--BTHHHHHHHHHHHHH
T ss_pred             EeCCCC--CCHHHHHHHHHHHHH
Confidence            999999  999999998876543

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=98.14  E-value=1e-06  Score=73.64  Aligned_cols=66  Identities=18%  Similarity=0.170  Sum_probs=45.1

Q ss_pred             cceEEEEeCCCCCChHHHHHHHhCCC------CCCC----CceecCCCCCceeEeeeeEEecCCCcEEEEeCCCCC
Q psy15351        167 YNTTVMVVGVPNVGKSSIINALRSSH------MKKG----KAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGIS  232 (352)
Q Consensus       167 ~~~~v~i~G~pnvGKStliN~l~~~~------~~~~----~~~~~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~  232 (352)
                      +.++|+++|.+++|||||+|+|++..      ..+.    .........|.|.+.........+..+.++||||..
T Consensus         2 p~ini~iiGHvd~GKSTL~~~l~~~~~~~~~~~~~~~~~~~~~~~Er~rgiTi~~~~~~~~~~~~~~~~iDtPGh~   77 (196)
T d1d2ea3           2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHA   77 (196)
T ss_dssp             CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHH
T ss_pred             CCcEEEEEeCCCCcHHHHHHHHHHHHHHcCcchhhhhhhcccchhhcCCCccCCcceEEEEeceeeEEeecCcchH
Confidence            45899999999999999999997410      0000    011123346888887654455566789999999954

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.14  E-value=8.1e-07  Score=72.38  Aligned_cols=60  Identities=18%  Similarity=0.219  Sum_probs=36.1

Q ss_pred             ceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecC-CCcEEEEeCCCCC
Q psy15351        168 NTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISE-KPLIYILDTPGIS  232 (352)
Q Consensus       168 ~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~-~~~~~l~DtPGi~  232 (352)
                      .++|+++|.||||||||+|++....    -.....+..+.+.... .+.... ...+.++||||-.
T Consensus         5 ~~KI~lvG~~~vGKTsll~~~~~~~----~~~~~~~t~~~~~~~~-~~~~~~~~~~~~i~D~~G~~   65 (174)
T d2bmea1           5 LFKFLVIGNAGTGKSCLLHQFIEKK----FKDDSNHTIGVEFGSK-IINVGGKYVKLQIWDTAGQE   65 (174)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSS----CCTTCCCCSEEEEEEE-EEEETTEEEEEEEEEECCSG
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCC----CCcccccccccceeeE-EEEecCcceeEEEEECCCch
Confidence            4789999999999999999998521    1112222333333221 111111 1257899999943

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.13  E-value=3.7e-06  Score=68.20  Aligned_cols=87  Identities=18%  Similarity=0.184  Sum_probs=58.1

Q ss_pred             HHhhccCEEEEEEcCCCCCCCcC--HHHHHHHh-------CCCCEEEEEEcccCCCccc---hHHHHHHHHhhcCCCCcE
Q psy15351         10 KHLKNVDIVIEVHDSRMPFTGRN--HLLQQSVQ-------NIRPMVLVLNKRDLINSKH---ESLIEEKVRKEQSHISEV   77 (352)
Q Consensus        10 ~~i~~aD~vl~VvDar~p~~~~~--~~l~~~l~-------~~k~~ilVlNK~Dl~~~~~---~~~~~~~~~~~~~~~~~v   77 (352)
                      .....+|++++|.|+.++.+...  ..+.++..       ...|+++|.||+|+.+...   ..+..++.++.+..  ++
T Consensus        71 ~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~--~~  148 (175)
T d1ky3a_          71 AFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDI--PL  148 (175)
T ss_dssp             CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSC--CE
T ss_pred             HHhhccceEEEEeecccccccchhhhcchhhhhhhhhcccccCcEEEEecccchhhhhcchhHHHHHHHHHHcCCC--eE
Confidence            35788999999999987653322  11222221       2579999999999976432   23333333343322  48


Q ss_pred             EEeecCCCCCCCHHHHHHHHHHH
Q psy15351         78 IFTNCRNPNCKGVQKILPTLQHI  100 (352)
Q Consensus        78 ~~iSa~~~~~~gi~~L~~~i~~~  100 (352)
                      +.+||+++  .|+++++.+|.+.
T Consensus       149 ~e~SA~~g--~gv~e~f~~l~~~  169 (175)
T d1ky3a_         149 FLTSAKNA--INVDTAFEEIARS  169 (175)
T ss_dssp             EEEBTTTT--BSHHHHHHHHHHH
T ss_pred             EEEeCCCC--cCHHHHHHHHHHH
Confidence            89999999  9999999887653

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.13  E-value=3e-06  Score=68.97  Aligned_cols=86  Identities=17%  Similarity=0.103  Sum_probs=58.2

Q ss_pred             HHhhccCEEEEEEcCCCCCCCcC--HHHHHHHh---CCCCEEEEEEcccCCCccc--hHHHHHHHHhhcCCCCcEEEeec
Q psy15351         10 KHLKNVDIVIEVHDSRMPFTGRN--HLLQQSVQ---NIRPMVLVLNKRDLINSKH--ESLIEEKVRKEQSHISEVIFTNC   82 (352)
Q Consensus        10 ~~i~~aD~vl~VvDar~p~~~~~--~~l~~~l~---~~k~~ilVlNK~Dl~~~~~--~~~~~~~~~~~~~~~~~v~~iSa   82 (352)
                      ..+..+|++|+|.|..++.+...  ..+..+.+   .+.|+++|.||+|+.+...  ........+..+.   +++.+||
T Consensus        72 ~~~~~~~~~i~v~d~~~~~S~~~~~~~~~~i~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~---~~~e~Sa  148 (175)
T d2f9la1          72 AYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNL---SFIETSA  148 (175)
T ss_dssp             HHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTC---EEEECCT
T ss_pred             HHhhccCeEEEEEECCCcccchhHHHHHHHHHHhcCCCCcEEEEEeeecccccccchHHHHHHhhcccCc---eEEEEec
Confidence            45688999999999987643322  12222222   3578999999999975432  2333444444444   4899999


Q ss_pred             CCCCCCCHHHHHHHHHHH
Q psy15351         83 RNPNCKGVQKILPTLQHI  100 (352)
Q Consensus        83 ~~~~~~gi~~L~~~i~~~  100 (352)
                      +++  .|++++++.+.+.
T Consensus       149 ~~g--~~i~e~f~~l~~~  164 (175)
T d2f9la1         149 LDS--TNVEEAFKNILTE  164 (175)
T ss_dssp             TTC--TTHHHHHHHHHHH
T ss_pred             CCC--cCHHHHHHHHHHH
Confidence            999  9999998776543

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=98.12  E-value=5.3e-06  Score=67.50  Aligned_cols=89  Identities=16%  Similarity=0.153  Sum_probs=60.2

Q ss_pred             HhhccCEEEEEEcCCCCCCCcCHHHHHHHh-CCCCEEEEEEcccCCCccchHHHHHHHHhh---cCCCCcEEEeecCCCC
Q psy15351         11 HLKNVDIVIEVHDSRMPFTGRNHLLQQSVQ-NIRPMVLVLNKRDLINSKHESLIEEKVRKE---QSHISEVIFTNCRNPN   86 (352)
Q Consensus        11 ~i~~aD~vl~VvDar~p~~~~~~~l~~~l~-~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~---~~~~~~v~~iSa~~~~   86 (352)
                      .+..++.++.+.|+..+...........+. ...+.++++||+|+++........+.+++.   .....+++++||+++ 
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~k~D~~~~~~~~~~~~~~~~~l~~~~~~~~~i~vSA~~g-  173 (188)
T d1puia_          95 KRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKK-  173 (188)
T ss_dssp             HCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTT-
T ss_pred             hhhheeEEEEeecccccchhHHHHHHHHhhhccccccchhhhhhccCHHHHHHHHHHHHHHHHhhCCCCcEEEEeCCCC-
Confidence            345566777778887765554444444333 678899999999999876544333333221   111226899999999 


Q ss_pred             CCCHHHHHHHHHHHh
Q psy15351         87 CKGVQKILPTLQHIS  101 (352)
Q Consensus        87 ~~gi~~L~~~i~~~~  101 (352)
                       .|+++|++.|.+++
T Consensus       174 -~Gid~L~~~i~~~~  187 (188)
T d1puia_         174 -QGVDKLRQKLDTWF  187 (188)
T ss_dssp             -BSHHHHHHHHHHHH
T ss_pred             -CCHHHHHHHHHHHh
Confidence             99999999987764

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=98.12  E-value=1.3e-06  Score=71.04  Aligned_cols=60  Identities=15%  Similarity=0.198  Sum_probs=36.2

Q ss_pred             CcceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCCcEEEEeCCCCCCC
Q psy15351        166 VYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLP  234 (352)
Q Consensus       166 ~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~~~  234 (352)
                      ++..+|+++|.||||||||+|+|.+     .....+.+..+.+....   . ..+..+.+.|++|....
T Consensus        11 ~k~~kI~lvG~~~vGKTsLl~~l~~-----~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~   70 (186)
T d1f6ba_          11 KKTGKLVFLGLDNAGKTTLLHMLKD-----DRLGQHVPTLHPTSEEL---T-IAGMTFTTFDLGGHIQA   70 (186)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHHSC-----C------CCCCCSCEEE---E-ETTEEEEEEEECC----
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhC-----CCCcceecccccceeEE---E-ecccccccccccchhhh
Confidence            3568999999999999999999987     33334444445444322   1 22345778888887764

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=98.11  E-value=7.8e-06  Score=66.11  Aligned_cols=90  Identities=14%  Similarity=0.042  Sum_probs=60.8

Q ss_pred             HHhhccCEEEEEEcCCCCCCCcCHH--HHHHHh----CCCCEEEEEEcccCCCccchHHHHHHHHhhcCC--CCcEEEee
Q psy15351         10 KHLKNVDIVIEVHDSRMPFTGRNHL--LQQSVQ----NIRPMVLVLNKRDLINSKHESLIEEKVRKEQSH--ISEVIFTN   81 (352)
Q Consensus        10 ~~i~~aD~vl~VvDar~p~~~~~~~--l~~~l~----~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~--~~~v~~iS   81 (352)
                      .....++.+++|+|..+........  ......    .+.|+++|.||+|+.......+..+.+......  ..+++.+|
T Consensus        78 ~~~~~~~~~i~v~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~S  157 (177)
T d1zj6a1          78 TYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACC  157 (177)
T ss_dssp             HHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEEECB
T ss_pred             hhhccceeeeeecccccccchhhhhhhhhhhhhcccccceEEEEEEEcccccccCcHHHHHHHHHHHhhHhcCCEEEEEe
Confidence            4567899999999988654332211  111221    578999999999997665545555544322111  12488899


Q ss_pred             cCCCCCCCHHHHHHHHHHHh
Q psy15351         82 CRNPNCKGVQKILPTLQHIS  101 (352)
Q Consensus        82 a~~~~~~gi~~L~~~i~~~~  101 (352)
                      |+++  +|+++++++|.+.+
T Consensus       158 a~tg--~Gi~e~~~~L~~~l  175 (177)
T d1zj6a1         158 ALTG--EGLCQGLEWMMSRL  175 (177)
T ss_dssp             TTTT--BTHHHHHHHHHHHH
T ss_pred             CCCC--CCHHHHHHHHHHHh
Confidence            9999  99999999998765

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.11  E-value=1.6e-06  Score=70.71  Aligned_cols=61  Identities=21%  Similarity=0.284  Sum_probs=36.6

Q ss_pred             ceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCC-CcEEEEeCCCCCC
Q psy15351        168 NTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEK-PLIYILDTPGISL  233 (352)
Q Consensus       168 ~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~-~~~~l~DtPGi~~  233 (352)
                      -++|+++|.+|||||||+|++.+.    .-.....+.++.+.... .+...+. -.+.++||||--.
T Consensus         4 ~~Ki~vvG~~~vGKTsLi~~~~~~----~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~d~~g~e~   65 (175)
T d2f9la1           4 LFKVVLIGDSGVGKSNLLSRFTRN----EFNLESKSTIGVEFATR-SIQVDGKTIKAQIWDTAGQER   65 (175)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHS----CCCC---CCCSCEEEEE-EEEETTEEEEEEEEECSSGGG
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhC----CCCCcccccccceeeeE-EEEECCEEEEEEecccCCcHH
Confidence            378999999999999999999862    11122223333333221 2222221 1578999999543

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.10  E-value=2.8e-06  Score=68.61  Aligned_cols=86  Identities=16%  Similarity=0.095  Sum_probs=60.0

Q ss_pred             HHhhccCEEEEEEcCCCCCCCcCHHHHHHH----h---CCCCEEEEEEcccCCCccc--hHHHHHHHHhhcCCCCcEEEe
Q psy15351         10 KHLKNVDIVIEVHDSRMPFTGRNHLLQQSV----Q---NIRPMVLVLNKRDLINSKH--ESLIEEKVRKEQSHISEVIFT   80 (352)
Q Consensus        10 ~~i~~aD~vl~VvDar~p~~~~~~~l~~~l----~---~~k~~ilVlNK~Dl~~~~~--~~~~~~~~~~~~~~~~~v~~i   80 (352)
                      .....+|.+|+|.|..++.+..  .+..+.    .   ...|+++|.||+|+.....  ..+..++.++.+..   ++.+
T Consensus        72 ~~~~~~~~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~---~~e~  146 (167)
T d1z0ja1          72 MYYRGSAAAIIVYDITKEETFS--TLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAI---FVET  146 (167)
T ss_dssp             HHHTTCSEEEEEEETTCHHHHH--HHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCE---EEEC
T ss_pred             HHHhhccceEEEeeechhhhhh--hHHHhhhhhhhccCCcceEEEecccchhccccchhHHHHHHHHHHcCCE---EEEE
Confidence            4578899999999998653322  222221    1   5678999999999965432  23444444444554   8899


Q ss_pred             ecCCCCCCCHHHHHHHHHHHhh
Q psy15351         81 NCRNPNCKGVQKILPTLQHISD  102 (352)
Q Consensus        81 Sa~~~~~~gi~~L~~~i~~~~~  102 (352)
                      ||+++  .|+++++..|.+.++
T Consensus       147 SAk~~--~nV~e~f~~l~~~i~  166 (167)
T d1z0ja1         147 SAKNA--ININELFIEISRRIP  166 (167)
T ss_dssp             BTTTT--BSHHHHHHHHHHHCC
T ss_pred             ecCCC--CCHHHHHHHHHHhCC
Confidence            99999  999999998876553

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.09  E-value=2.3e-06  Score=69.01  Aligned_cols=89  Identities=17%  Similarity=0.108  Sum_probs=59.7

Q ss_pred             HHHHhhccCEEEEEEcCCCCCCCcC-HHHH-HHHh----CCCCEEEEEEcccCCCccc--hHHHHHHHHhhcCCCCcEEE
Q psy15351          8 IEKHLKNVDIVIEVHDSRMPFTGRN-HLLQ-QSVQ----NIRPMVLVLNKRDLINSKH--ESLIEEKVRKEQSHISEVIF   79 (352)
Q Consensus         8 ~~~~i~~aD~vl~VvDar~p~~~~~-~~l~-~~l~----~~k~~ilVlNK~Dl~~~~~--~~~~~~~~~~~~~~~~~v~~   79 (352)
                      .......+|++++|.|..++.+..+ ..+. ....    .+.|+++|.||+|+.....  ..+...+.++.+..   ++.
T Consensus        68 ~~~~~~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~---~~e  144 (167)
T d1kaoa_          68 RDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCP---FME  144 (167)
T ss_dssp             HHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSC---EEE
T ss_pred             hHHHhhcccceeeeeeecchhhhhhhhchhhhhhhhccCCCCCEEEEEEccchhhcccchHHHHHHHHHHcCCe---EEE
Confidence            3456789999999999986543322 1111 1111    3579999999999875432  23333444445665   899


Q ss_pred             eecCCCCCCCHHHHHHHHHHHh
Q psy15351         80 TNCRNPNCKGVQKILPTLQHIS  101 (352)
Q Consensus        80 iSa~~~~~~gi~~L~~~i~~~~  101 (352)
                      +||+++  .|+++++..|.+.+
T Consensus       145 ~Sak~g--~~i~e~f~~i~~~i  164 (167)
T d1kaoa_         145 TSAKSK--TMVDELFAEIVRQM  164 (167)
T ss_dssp             ECTTCH--HHHHHHHHHHHHHH
T ss_pred             ECCCCC--cCHHHHHHHHHHHH
Confidence            999999  99999988876543

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.08  E-value=1.6e-06  Score=70.48  Aligned_cols=60  Identities=18%  Similarity=0.293  Sum_probs=33.2

Q ss_pred             eEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCC--CcEEEEeCCCCCC
Q psy15351        169 TTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEK--PLIYILDTPGISL  233 (352)
Q Consensus       169 ~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~--~~~~l~DtPGi~~  233 (352)
                      ++|+++|.+|||||||+|++.+..    ......+.++.+.... .......  ..+.++||||-..
T Consensus         3 ~Ki~~vG~~~vGKSsLi~~~~~~~----~~~~~~~t~~~~~~~~-~~~~~~~~~~~~~~~d~~g~~~   64 (175)
T d1ky3a_           3 LKVIILGDSGVGKTSLMHRYVNDK----YSQQYKATIGADFLTK-EVTVDGDKVATMQVWDTAGQER   64 (175)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSC----CCTTC---CCCSCEEE-EECCSSSCCEEEEEECCC----
T ss_pred             EEEEEECCCCcCHHHHHHHHHcCC----CCCccCcccccceeee-eeeecCcccccceeeccCCchh
Confidence            789999999999999999998631    1122233344333221 1111221  2467899999643

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.08  E-value=1.6e-06  Score=70.08  Aligned_cols=62  Identities=23%  Similarity=0.265  Sum_probs=37.9

Q ss_pred             cceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCC--CcEEEEeCCCCCCC
Q psy15351        167 YNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEK--PLIYILDTPGISLP  234 (352)
Q Consensus       167 ~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~--~~~~l~DtPGi~~~  234 (352)
                      +.++|+++|.+|||||||+|++.....    .....+..+.+....  ......  ..+.++||+|-...
T Consensus         3 k~~Ki~lvG~~~vGKTsli~rl~~~~f----~~~~~~t~~~~~~~~--~~~~~~~~~~~~i~d~~g~~~~   66 (167)
T d1z0ja1           3 RELKVCLLGDTGVGKSSIMWRFVEDSF----DPNINPTIGASFMTK--TVQYQNELHKFLIWDTAGLERF   66 (167)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHHSCC----CTTCCCCCSEEEEEE--EEEETTEEEEEEEEEECCSGGG
T ss_pred             ceeEEEEECCCCcCHHHHHHHHHhCCC----Ccccccccccccccc--cccccccccceeeeecCCchhh
Confidence            358899999999999999999986321    112222333333322  111221  24678999997653

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.08  E-value=4.6e-06  Score=66.96  Aligned_cols=85  Identities=27%  Similarity=0.266  Sum_probs=57.4

Q ss_pred             HHhhccCEEEEEEcCCCCCCCcC--HHHHHHHh----CCCCEEEEEEcccCCCccc--hHHHHHHHHhhcCCCCcEEEee
Q psy15351         10 KHLKNVDIVIEVHDSRMPFTGRN--HLLQQSVQ----NIRPMVLVLNKRDLINSKH--ESLIEEKVRKEQSHISEVIFTN   81 (352)
Q Consensus        10 ~~i~~aD~vl~VvDar~p~~~~~--~~l~~~l~----~~k~~ilVlNK~Dl~~~~~--~~~~~~~~~~~~~~~~~v~~iS   81 (352)
                      ..+.++|++++|.|..++.+...  ..+.++.+    .+.|+++|.||+|+..+..  .++..++.++.+..   ++.+|
T Consensus        71 ~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~pi~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~---~~e~S  147 (165)
T d1z06a1          71 HYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMP---LFETS  147 (165)
T ss_dssp             HHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCC---EEECC
T ss_pred             eeecCCCceEEEEEeehhhhhhhhhhhhHHHHhhccCCCCeEEEEeccccchhccchhHHHHHHHHHHCCCE---EEEEe
Confidence            46789999999999988744333  12222222    3679999999999976532  33444555555665   89999


Q ss_pred             cCCCC-CCCHHHHHHHH
Q psy15351         82 CRNPN-CKGVQKILPTL   97 (352)
Q Consensus        82 a~~~~-~~gi~~L~~~i   97 (352)
                      |+++. ..|+++++..|
T Consensus       148 Akt~~~~~~V~e~F~~l  164 (165)
T d1z06a1         148 AKNPNDNDHVEAIFMTL  164 (165)
T ss_dssp             SSSGGGGSCHHHHHHHH
T ss_pred             cccCCcCcCHHHHHHHh
Confidence            99751 26888887654

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.07  E-value=4.5e-06  Score=67.74  Aligned_cols=89  Identities=12%  Similarity=0.007  Sum_probs=60.3

Q ss_pred             HHHHhhccCEEEEEEcCCCCCCCcCH--HHHHHHh---CCCCEEEEEEcccCCCccc--hHHHHHHHHhhcCCCCcEEEe
Q psy15351          8 IEKHLKNVDIVIEVHDSRMPFTGRNH--LLQQSVQ---NIRPMVLVLNKRDLINSKH--ESLIEEKVRKEQSHISEVIFT   80 (352)
Q Consensus         8 ~~~~i~~aD~vl~VvDar~p~~~~~~--~l~~~l~---~~k~~ilVlNK~Dl~~~~~--~~~~~~~~~~~~~~~~~v~~i   80 (352)
                      ....+..+|++++|.|.+++.+..+.  .+.....   .+.|+++|.||+|+.....  .....++.++.+.+   ++.+
T Consensus        71 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~---~~e~  147 (174)
T d2bmea1          71 TRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENELM---FLET  147 (174)
T ss_dssp             HHTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCE---EEEC
T ss_pred             HHHHhhhCCEEEEEEecccchhHHHHhhhhcccccccCCceEEEEEEecccccchhchhhhHHHHHHHhCCCE---EEEe
Confidence            44567899999999999876433221  1222222   4689999999999865433  22333444444554   8999


Q ss_pred             ecCCCCCCCHHHHHHHHHHHh
Q psy15351         81 NCRNPNCKGVQKILPTLQHIS  101 (352)
Q Consensus        81 Sa~~~~~~gi~~L~~~i~~~~  101 (352)
                      ||+++  .|+++++..+.+.+
T Consensus       148 Sak~~--~gi~e~f~~l~~~i  166 (174)
T d2bmea1         148 SALTG--ENVEEAFVQCARKI  166 (174)
T ss_dssp             CTTTC--TTHHHHHHHHHHHH
T ss_pred             eCCCC--cCHHHHHHHHHHHH
Confidence            99999  99999998876543

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=98.07  E-value=5.1e-06  Score=73.98  Aligned_cols=25  Identities=28%  Similarity=0.481  Sum_probs=22.3

Q ss_pred             ceEEEEeCCCCCChHHHHHHHhCCC
Q psy15351        168 NTTVMVVGVPNVGKSSIINALRSSH  192 (352)
Q Consensus       168 ~~~v~i~G~pnvGKStliN~l~~~~  192 (352)
                      ..+|+|+|..++|||||||+|+|..
T Consensus        24 lP~ivVvG~~ssGKSSliNaLlG~~   48 (306)
T d1jwyb_          24 LPQIVVVGSQSSGKSSVLENIVGRD   48 (306)
T ss_dssp             CCEEEEEECSSSSHHHHHHHHHTSC
T ss_pred             CCeEEEEeCCCCCHHHHHHHHhCCC
Confidence            3579999999999999999999843

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.05  E-value=5.3e-06  Score=66.78  Aligned_cols=85  Identities=11%  Similarity=0.042  Sum_probs=58.8

Q ss_pred             HHhhccCEEEEEEcCCCCCCCcC-HHHHHHHh----CCCCEEEEEEcccCCCccc--hHHHHHHHHhhcCCCCcEEEeec
Q psy15351         10 KHLKNVDIVIEVHDSRMPFTGRN-HLLQQSVQ----NIRPMVLVLNKRDLINSKH--ESLIEEKVRKEQSHISEVIFTNC   82 (352)
Q Consensus        10 ~~i~~aD~vl~VvDar~p~~~~~-~~l~~~l~----~~k~~ilVlNK~Dl~~~~~--~~~~~~~~~~~~~~~~~v~~iSa   82 (352)
                      ..+..+|++++|.|..++.+... ..+...+.    ...|+++|.||+|+.....  .++..++.++.+.+   ++.+||
T Consensus        72 ~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~---~~e~Sa  148 (166)
T d1z0fa1          72 SYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLL---FLEASA  148 (166)
T ss_dssp             HHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCE---EEECCT
T ss_pred             HHhcCCcEEEEEeccCchHHHHHHHHHHHHHHhhccccceEEEEcccccchhhcccHHHHHHHHHHHcCCE---EEEEeC
Confidence            45789999999999987533222 11112222    4678999999999865433  23445555555654   899999


Q ss_pred             CCCCCCCHHHHHHHHHH
Q psy15351         83 RNPNCKGVQKILPTLQH   99 (352)
Q Consensus        83 ~~~~~~gi~~L~~~i~~   99 (352)
                      +++  .|+++++..|.+
T Consensus       149 ktg--~~v~e~f~~i~~  163 (166)
T d1z0fa1         149 KTG--ENVEDAFLEAAK  163 (166)
T ss_dssp             TTC--TTHHHHHHHHHH
T ss_pred             CCC--CCHHHHHHHHHH
Confidence            999  999999887764

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=98.05  E-value=8.5e-06  Score=68.24  Aligned_cols=81  Identities=14%  Similarity=0.051  Sum_probs=55.2

Q ss_pred             hHHHHHHHHhhccCEEEEEEcCCCCCCCcCHHHHHHHh-CCCC-EEEEEEcccCCCccc-hH----HHHHHHHhhcCCC-
Q psy15351          3 RGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQ-NIRP-MVLVLNKRDLINSKH-ES----LIEEKVRKEQSHI-   74 (352)
Q Consensus         3 ~~~~~~~~~i~~aD~vl~VvDar~p~~~~~~~l~~~l~-~~k~-~ilVlNK~Dl~~~~~-~~----~~~~~~~~~~~~~-   74 (352)
                      ...+.+...+..+|++|+|+||..++.........++. .+.| +++++||+|+++... .+    +..+++...+++. 
T Consensus        79 df~~~~~~~~~~aD~avlVvda~~Gv~~qt~~~~~~~~~~gi~~iiv~iNK~D~~~~~~~~~~~~~~i~~~l~~~~~~~~  158 (204)
T d2c78a3          79 DYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFPGD  158 (204)
T ss_dssp             GGHHHHHHHHTTCSSEEEEEETTTCCCHHHHHHHHHHHHTTCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTTSCTT
T ss_pred             hhHHHHHHHHHHCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEEecccCCCHHHHHHHHHHHHHHHHhcCCCcc
Confidence            46778899999999999999999988776666666554 5654 677899999987542 22    2333343333321 


Q ss_pred             -CcEEEeecC
Q psy15351         75 -SEVIFTNCR   83 (352)
Q Consensus        75 -~~v~~iSa~   83 (352)
                       .+++..|+.
T Consensus       159 ~i~~i~~sa~  168 (204)
T d2c78a3         159 EVPVIRGSAL  168 (204)
T ss_dssp             TSCEEECCHH
T ss_pred             cceeeeeech
Confidence             246777764

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.05  E-value=2.4e-06  Score=69.45  Aligned_cols=62  Identities=23%  Similarity=0.201  Sum_probs=37.3

Q ss_pred             cceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecC-CCcEEEEeCCCCCC
Q psy15351        167 YNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISE-KPLIYILDTPGISL  233 (352)
Q Consensus       167 ~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~-~~~~~l~DtPGi~~  233 (352)
                      +-++|+++|.||||||||+|++...    .-......+.+.+.... .....+ .-.+.++||+|...
T Consensus         5 ~~~KI~vvG~~~vGKSSli~~~~~~----~~~~~~~~t~~~~~~~~-~~~~~~~~~~~~i~d~~g~~~   67 (174)
T d1wmsa_           5 SLFKVILLGDGGVGKSSLMNRYVTN----KFDTQLFHTIGVEFLNK-DLEVDGHFVTMQIWDTAGQER   67 (174)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHHS----CCCC----CCSEEEEEE-EEEETTEEEEEEEEECCCCGG
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHhC----CCCCccccceeeeeeee-eeeecCceeeEeeecccCcce
Confidence            3478999999999999999999852    12223333444444322 222222 12467999999654

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=98.05  E-value=4.3e-06  Score=73.26  Aligned_cols=133  Identities=14%  Similarity=0.101  Sum_probs=69.9

Q ss_pred             EEEEeCCCCCChHHHHHHHhCC--CCCCC----CceecC------CCCCceeEeeeeEEecCCCcEEEEeCCCCCCCCCC
Q psy15351        170 TVMVVGVPNVGKSSIINALRSS--HMKKG----KAVPVG------PKAGVTRSVMSQVKISEKPLIYILDTPGISLPRID  237 (352)
Q Consensus       170 ~v~i~G~pnvGKStliN~l~~~--~~~~~----~~~~~~------~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~~~~~~  237 (352)
                      +|+++|..++|||||+.+|+-.  .+.+.    ....+.      ...|.|...........+..+.++||||..+.. .
T Consensus         8 ni~i~gh~~~GKTtL~e~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~r~~si~~~~~~~~~~~~~~n~iDtPG~~dF~-~   86 (276)
T d2bv3a2           8 NIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDAPGHVDFT-I   86 (276)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHHTSSCC-------------------CCCCCCCSEEEEEETTEEEEEECCCSSSSCS-T
T ss_pred             EEEEEeCCCCCHHHHHHHHHHhcCccccccceecCceEEeccHHHHhcCCccccceeeeccCCeEEEEecCCchhhhH-H
Confidence            6999999999999999999631  11000    001111      123445544444445567789999999998763 2


Q ss_pred             CHHHHHHHHHH-hhhhhhccchhhhhHhHHhhhcCCCCCcccccccCCCCCccHHHHHHHHHHHhcc
Q psy15351        238 NLECGMRLAAC-ATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIKKKW  303 (352)
Q Consensus       238 ~~~~~~~l~~~-~~i~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~a~~~g~  303 (352)
                      +...+++.+-. -.+.+..-+.+.--..+...........+.-.-+++.+..++.+.+.++..++|.
T Consensus        87 e~~~~l~~~D~avlVvda~~Gv~~~T~~~w~~a~~~~lP~i~fINKmDr~~ad~~~~l~ei~~~l~~  153 (276)
T d2bv3a2          87 EVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRIAFANKMDKTGADLWLVIRTMQERLGA  153 (276)
T ss_dssp             THHHHHHHCCEEEEEEETTTSSCHHHHHHHHHHHTTTCCEEEEEECTTSTTCCHHHHHHHHHHTTCC
T ss_pred             HHHHHHHhhhheEEeccccCCcchhHHHHHHHHHHcCCCEEEEEecccccccccchhHHHHHHHhCC
Confidence            33323321100 0011211122222223334444443333333334455667789999999887764

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.04  E-value=3.6e-06  Score=68.09  Aligned_cols=88  Identities=14%  Similarity=0.038  Sum_probs=59.2

Q ss_pred             HHhhccCEEEEEEcCCCCCCCcC-HHH-HHHHh---CCCCEEEEEEcccCCCccc--hHHHHHHHHhhcCCCCcEEEeec
Q psy15351         10 KHLKNVDIVIEVHDSRMPFTGRN-HLL-QQSVQ---NIRPMVLVLNKRDLINSKH--ESLIEEKVRKEQSHISEVIFTNC   82 (352)
Q Consensus        10 ~~i~~aD~vl~VvDar~p~~~~~-~~l-~~~l~---~~k~~ilVlNK~Dl~~~~~--~~~~~~~~~~~~~~~~~v~~iSa   82 (352)
                      ..+..+|.+++|.|..++.+... ..+ ..+.+   .+.|+++|.||+|+..+..  .+...++.+..+..   ++.+||
T Consensus        74 ~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~e~~~~~~~~~~~~---~~e~SA  150 (170)
T d1r2qa_          74 MYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLL---FMETSA  150 (170)
T ss_dssp             HHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCE---EEECCT
T ss_pred             HHhhCcceEEEEeccchhhHHHHHHHHhhhhhhccCCCceEEeecccccccccccccHHHHHHHHHhcCCE---EEEeeC
Confidence            35789999999999876533221 111 12222   4678999999999865532  23333433344554   899999


Q ss_pred             CCCCCCCHHHHHHHHHHHhh
Q psy15351         83 RNPNCKGVQKILPTLQHISD  102 (352)
Q Consensus        83 ~~~~~~gi~~L~~~i~~~~~  102 (352)
                      +++  .|+++++..|.+.+.
T Consensus       151 k~g--~~V~e~f~~l~~~i~  168 (170)
T d1r2qa_         151 KTS--MNVNEIFMAIAKKLP  168 (170)
T ss_dssp             TTC--TTHHHHHHHHHHTSC
T ss_pred             CCC--CCHHHHHHHHHHHHh
Confidence            999  999999998876543

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.04  E-value=6.3e-06  Score=66.84  Aligned_cols=87  Identities=16%  Similarity=0.066  Sum_probs=58.6

Q ss_pred             HHhhccCEEEEEEcCCCCCCCcC--HHHHHHHh---CCCCEEEEEEcccCCCccc--hHHHHHHHHhhcCCCCcEEEeec
Q psy15351         10 KHLKNVDIVIEVHDSRMPFTGRN--HLLQQSVQ---NIRPMVLVLNKRDLINSKH--ESLIEEKVRKEQSHISEVIFTNC   82 (352)
Q Consensus        10 ~~i~~aD~vl~VvDar~p~~~~~--~~l~~~l~---~~k~~ilVlNK~Dl~~~~~--~~~~~~~~~~~~~~~~~v~~iSa   82 (352)
                      .....+|++++|.|..++.+...  ..+....+   .+.|+++|.||+|+.....  .++...+.++.+..   ++.+||
T Consensus        71 ~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~a~~~~~~---~~e~Sa  147 (173)
T d2a5ja1          71 SYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLI---FMETSA  147 (173)
T ss_dssp             HHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCE---EEEECT
T ss_pred             HHhhccCEEEEEEeecChHHHHhHHHHHHHHHHhCCCCCeEEEEecCCchhhhhhhHHHHHHHHHHHcCCE---EEEecC
Confidence            45678999999999987643322  11222222   4678999999999864322  23333444445654   889999


Q ss_pred             CCCCCCCHHHHHHHHHHHh
Q psy15351         83 RNPNCKGVQKILPTLQHIS  101 (352)
Q Consensus        83 ~~~~~~gi~~L~~~i~~~~  101 (352)
                      +++  .|+++++..+.+.+
T Consensus       148 ~tg--~~V~e~f~~i~~~i  164 (173)
T d2a5ja1         148 KTA--CNVEEAFINTAKEI  164 (173)
T ss_dssp             TTC--TTHHHHHHHHHHHH
T ss_pred             CCC--CCHHHHHHHHHHHH
Confidence            999  99999988776543

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.03  E-value=5.7e-06  Score=66.95  Aligned_cols=88  Identities=20%  Similarity=0.146  Sum_probs=58.9

Q ss_pred             HHhhccCEEEEEEcCCCCCCCcC-HHHHH-HHh---CCCCEEEEEEcccCCCccc--hHHHHHHHHhhcCCCCcEEEeec
Q psy15351         10 KHLKNVDIVIEVHDSRMPFTGRN-HLLQQ-SVQ---NIRPMVLVLNKRDLINSKH--ESLIEEKVRKEQSHISEVIFTNC   82 (352)
Q Consensus        10 ~~i~~aD~vl~VvDar~p~~~~~-~~l~~-~l~---~~k~~ilVlNK~Dl~~~~~--~~~~~~~~~~~~~~~~~v~~iSa   82 (352)
                      ..+..+|++++|.|..++.+... ..+.. +.+   ...|+++|.||+|+.....  ..+..++.+..+.+   ++.+||
T Consensus        73 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ilvgnK~D~~~~~~v~~~~~~~~~~~~~~~---~~~~SA  149 (171)
T d2ew1a1          73 SYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMY---YLETSA  149 (171)
T ss_dssp             GGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCC---EEECCT
T ss_pred             HHHhccceEEEeeecccchhhhhhhhhhhhhcccccccccEEEEEeecccccccchhhhHHHHHHHhCCCE---EEEEcc
Confidence            35789999999999887543322 11222 222   3578999999999875433  23344444455665   899999


Q ss_pred             CCCCCCCHHHHHHHHH-HHhh
Q psy15351         83 RNPNCKGVQKILPTLQ-HISD  102 (352)
Q Consensus        83 ~~~~~~gi~~L~~~i~-~~~~  102 (352)
                      +++  .|+++++..|. +++.
T Consensus       150 ktg--~gV~e~f~~l~~~l~~  168 (171)
T d2ew1a1         150 KES--DNVEKLFLDLACRLIS  168 (171)
T ss_dssp             TTC--TTHHHHHHHHHHHHHH
T ss_pred             CCC--CCHHHHHHHHHHHHHH
Confidence            999  99999976554 4443

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.02  E-value=3.7e-06  Score=67.85  Aligned_cols=86  Identities=17%  Similarity=0.133  Sum_probs=59.1

Q ss_pred             HhhccCEEEEEEcCCCCCCCcC--HHHHHHHh---CCCCEEEEEEcccCCCccc--hHHHHHHHHhhcCCCCcEEEeecC
Q psy15351         11 HLKNVDIVIEVHDSRMPFTGRN--HLLQQSVQ---NIRPMVLVLNKRDLINSKH--ESLIEEKVRKEQSHISEVIFTNCR   83 (352)
Q Consensus        11 ~i~~aD~vl~VvDar~p~~~~~--~~l~~~l~---~~k~~ilVlNK~Dl~~~~~--~~~~~~~~~~~~~~~~~v~~iSa~   83 (352)
                      .+.++|++++|.|..++.+...  ..+.....   ...|+++|.||+|+.....  .++..++.++.+.+   ++.+||+
T Consensus        72 ~~~~~~~~i~v~d~~~~~Sf~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~e~~~~a~~~~~~---~~e~Sak  148 (167)
T d1z08a1          72 YYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAK---HYHTSAK  148 (167)
T ss_dssp             SSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCE---EEEEBTT
T ss_pred             hccCCceeEEEEeCCchhHHHhhhhhhhhcccccccccceeeeccccccccccccchHHHHHHHHHcCCe---EEEEecC
Confidence            5678999999999987643322  11111111   4567888999999876432  34445555555654   8899999


Q ss_pred             CCCCCCHHHHHHHHHHHh
Q psy15351         84 NPNCKGVQKILPTLQHIS  101 (352)
Q Consensus        84 ~~~~~gi~~L~~~i~~~~  101 (352)
                      ++  .|+++++..|.+.+
T Consensus       149 ~~--~~v~e~F~~l~~~i  164 (167)
T d1z08a1         149 QN--KGIEELFLDLCKRM  164 (167)
T ss_dssp             TT--BSHHHHHHHHHHHH
T ss_pred             CC--cCHHHHHHHHHHHH
Confidence            99  99999998876543

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.02  E-value=5.2e-06  Score=67.38  Aligned_cols=88  Identities=13%  Similarity=0.013  Sum_probs=56.9

Q ss_pred             HhhccCEEEEEEcCCCCCCCcC-HHHHHHHh----CCCCEEEEEEcccCCCccc--hHHHHHHHHhhcCCCCcEEEeecC
Q psy15351         11 HLKNVDIVIEVHDSRMPFTGRN-HLLQQSVQ----NIRPMVLVLNKRDLINSKH--ESLIEEKVRKEQSHISEVIFTNCR   83 (352)
Q Consensus        11 ~i~~aD~vl~VvDar~p~~~~~-~~l~~~l~----~~k~~ilVlNK~Dl~~~~~--~~~~~~~~~~~~~~~~~v~~iSa~   83 (352)
                      .+..+|++|+|+|++++.+... ..+...+.    ...|+++|.||.|+.....  ..+...+..+.+..   ++.+||+
T Consensus        75 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~~k~D~~~~~~~~~~~~~~~~~~~~~~---~~e~Sa~  151 (173)
T d2fu5c1          75 YYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIK---FMETSAK  151 (173)
T ss_dssp             TTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHHTCE---EEECCC-
T ss_pred             hccCCCEEEEEEECCChhhHHHHHHHHHHhhhhccCCceEEEEEecccchhhcccHHHHHHHHHHhcCCE---EEEEeCC
Confidence            4688999999999987643221 11111121    4689999999999986533  23344445555665   8999999


Q ss_pred             CCCCCCHHHHHHHHHHHhhh
Q psy15351         84 NPNCKGVQKILPTLQHISDN  103 (352)
Q Consensus        84 ~~~~~gi~~L~~~i~~~~~~  103 (352)
                      ++  +|+++++.+|.+.+.+
T Consensus       152 ~g--~gv~e~f~~l~~~i~~  169 (173)
T d2fu5c1         152 AN--INVENAFFTLARDIKA  169 (173)
T ss_dssp             ----CCHHHHHHHHHHHHHH
T ss_pred             CC--CCHHHHHHHHHHHHHH
Confidence            99  9999999988776643

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.01  E-value=2.7e-06  Score=68.85  Aligned_cols=58  Identities=21%  Similarity=0.312  Sum_probs=31.1

Q ss_pred             eEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCC-CcEEEEeCCCCCC
Q psy15351        169 TTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEK-PLIYILDTPGISL  233 (352)
Q Consensus       169 ~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~-~~~~l~DtPGi~~  233 (352)
                      ++|+++|.+|||||||+|.+.+.     ......+..+.+..  ..+.+.+. -.+.++||||-..
T Consensus         2 fKi~lvG~~~vGKTsLi~~~~~~-----~~~~~~~~~~~~~~--~~i~~~~~~~~l~i~D~~g~e~   60 (168)
T d2gjsa1           2 YKVLLLGAPGVGKSALARIFGGV-----EDGPEAEAAGHTYD--RSIVVDGEEASLMVYDIWEQDG   60 (168)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHTC--------------CEEEE--EEEEETTEEEEEEEEECC----
T ss_pred             eEEEEECCCCcCHHHHHHHHhCC-----ccCCcCCeeeeeec--ceeeccccccceeeeecccccc
Confidence            57999999999999999999863     22222222222221  11222221 2578899999643

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.00  E-value=1e-05  Score=65.06  Aligned_cols=87  Identities=21%  Similarity=0.138  Sum_probs=58.8

Q ss_pred             HHhhccCEEEEEEcCCCCCCCcC--HHHHHHHh----CCCCEEEEEEcccCCCccc--hHHHHHHHHhh-cCCCCcEEEe
Q psy15351         10 KHLKNVDIVIEVHDSRMPFTGRN--HLLQQSVQ----NIRPMVLVLNKRDLINSKH--ESLIEEKVRKE-QSHISEVIFT   80 (352)
Q Consensus        10 ~~i~~aD~vl~VvDar~p~~~~~--~~l~~~l~----~~k~~ilVlNK~Dl~~~~~--~~~~~~~~~~~-~~~~~~v~~i   80 (352)
                      .....+|++++|.|+.++.+..+  ..+....+    ...|+++|.||+|+.....  .++..+..++. +.   +++.+
T Consensus        70 ~~~~~~~~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~~~p~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~---~~~e~  146 (167)
T d1c1ya_          70 LYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNC---AFLES  146 (167)
T ss_dssp             HHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSC---EEEEC
T ss_pred             ccccccceeEEeeeccchhhhHhHHHHHHHHHHhcCCCCCeEEEEEEecCcccccccchhHHHHHHHHhCCC---EEEEE
Confidence            46789999999999987644332  12222222    3568999999999975533  22333333332 33   47889


Q ss_pred             ecCCCCCCCHHHHHHHHHHHh
Q psy15351         81 NCRNPNCKGVQKILPTLQHIS  101 (352)
Q Consensus        81 Sa~~~~~~gi~~L~~~i~~~~  101 (352)
                      ||+++  .|+++++..|.+.+
T Consensus       147 Sak~g--~gv~e~F~~l~~~i  165 (167)
T d1c1ya_         147 SAKSK--INVNEIFYDLVRQI  165 (167)
T ss_dssp             BTTTT--BSHHHHHHHHHHHH
T ss_pred             cCCCC--cCHHHHHHHHHHHh
Confidence            99999  99999998876543

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.00  E-value=3e-06  Score=68.86  Aligned_cols=61  Identities=21%  Similarity=0.221  Sum_probs=35.8

Q ss_pred             eEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecC-CCcEEEEeCCCCCCC
Q psy15351        169 TTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISE-KPLIYILDTPGISLP  234 (352)
Q Consensus       169 ~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~-~~~~~l~DtPGi~~~  234 (352)
                      ++|+++|.||||||||+|++.+..    ......+..+++... ....... ...+.++||+|-...
T Consensus         4 ~KivvvG~~~vGKTsli~r~~~~~----~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~d~~g~~~~   65 (173)
T d2a5ja1           4 FKYIIIGDTGVGKSCLLLQFTDKR----FQPVHDLTIGVEFGA-RMVNIDGKQIKLQIWDTAGQESF   65 (173)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHSC----CCC-----CCSSEEE-EEEEETTEEEEEEEECCTTGGGT
T ss_pred             EEEEEECCCCcCHHHHHHHHhcCC----CCCCcccceeeccce-eeeeeeeeEEEEEeecccCccch
Confidence            689999999999999999998621    111111222222221 1222222 225789999997654

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.00  E-value=3e-06  Score=68.10  Aligned_cols=59  Identities=20%  Similarity=0.250  Sum_probs=36.1

Q ss_pred             eEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCC--cEEEEeCCCCCC
Q psy15351        169 TTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKP--LIYILDTPGISL  233 (352)
Q Consensus       169 ~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~--~~~l~DtPGi~~  233 (352)
                      ++|+++|.+|||||||+|++.+.     + ......|.++...........+.  .+.++||||...
T Consensus         1 fKv~vvG~~~vGKTsLi~r~~~~-----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~   61 (164)
T d1yzqa1           1 FKLVFLGEQSVGKTSLITRFMYD-----S-FDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQER   61 (164)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHS-----C-CCSSCCCCCSEEEEEEEEECSSCEEEEEEEEECCSGG
T ss_pred             CEEEEECCCCcCHHHHHHHHHhC-----C-CCCccccceeeeccceeeccCCCceeeeecccCCcch
Confidence            47999999999999999999862     1 11122233322222222222222  467999999654

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.00  E-value=8.8e-06  Score=66.63  Aligned_cols=87  Identities=17%  Similarity=0.159  Sum_probs=58.4

Q ss_pred             HHhhccCEEEEEEcCCCCCCCcC--HHHHHHHh-------CCCCEEEEEEcccCCCccc-hHHHHHHHHhh-cCCCCcEE
Q psy15351         10 KHLKNVDIVIEVHDSRMPFTGRN--HLLQQSVQ-------NIRPMVLVLNKRDLINSKH-ESLIEEKVRKE-QSHISEVI   78 (352)
Q Consensus        10 ~~i~~aD~vl~VvDar~p~~~~~--~~l~~~l~-------~~k~~ilVlNK~Dl~~~~~-~~~~~~~~~~~-~~~~~~v~   78 (352)
                      ..+..+|+++++.|..++.+...  ..+.++..       ...|+++|.||+||..... .....++..+. +..   ++
T Consensus        70 ~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~---~~  146 (184)
T d1vg8a_          70 AFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYSKNNIP---YF  146 (184)
T ss_dssp             GGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSCHHHHHHHHHHTTSCC---EE
T ss_pred             ccccCccEEEEeecccchhhhhcchhhHHHHHHHhccccccCCCEEEEEEeecccccchhHHHHHHHHHHhcCCe---EE
Confidence            35678999999999986533222  11212221       2469999999999876543 23344444333 444   88


Q ss_pred             EeecCCCCCCCHHHHHHHHHHHh
Q psy15351         79 FTNCRNPNCKGVQKILPTLQHIS  101 (352)
Q Consensus        79 ~iSa~~~~~~gi~~L~~~i~~~~  101 (352)
                      .+||+++  .|++++++++.+.+
T Consensus       147 e~Sak~~--~gI~e~f~~l~~~i  167 (184)
T d1vg8a_         147 ETSAKEA--INVEQAFQTIARNA  167 (184)
T ss_dssp             ECBTTTT--BSHHHHHHHHHHHH
T ss_pred             EEcCCCC--cCHHHHHHHHHHHH
Confidence            9999999  99999998876543

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.99  E-value=1.2e-05  Score=65.16  Aligned_cols=86  Identities=12%  Similarity=0.077  Sum_probs=58.3

Q ss_pred             HHHhhccCEEEEEEcCCCCCCCcC--H---HHHHHHh----CCCCEEEEEEcccCCCccc-hHHHHHHHHhhc-CCCCcE
Q psy15351          9 EKHLKNVDIVIEVHDSRMPFTGRN--H---LLQQSVQ----NIRPMVLVLNKRDLINSKH-ESLIEEKVRKEQ-SHISEV   77 (352)
Q Consensus         9 ~~~i~~aD~vl~VvDar~p~~~~~--~---~l~~~l~----~~k~~ilVlNK~Dl~~~~~-~~~~~~~~~~~~-~~~~~v   77 (352)
                      ...+..+|+++++.|..++.+...  .   .+.++..    .+.|+++|.||+|+..... .++..++.++.+ ..   +
T Consensus        73 ~~~~~~~~~~i~~~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilVgnK~Dl~~~~v~~~~~~~~~~~~~~~~---~  149 (174)
T d1wmsa_          73 TPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQAWCRDNGDYP---Y  149 (174)
T ss_dssp             GGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCSSCHHHHHHHHHHTTCCC---E
T ss_pred             hhhhhccceEEEEEeeecccccchhhhHHHHHHHHhccccCCCceEEEeccccchhhccCcHHHHHHHHHHcCCCe---E
Confidence            356789999999999987643322  1   1222221    2578999999999975432 234444444443 44   8


Q ss_pred             EEeecCCCCCCCHHHHHHHHHH
Q psy15351         78 IFTNCRNPNCKGVQKILPTLQH   99 (352)
Q Consensus        78 ~~iSa~~~~~~gi~~L~~~i~~   99 (352)
                      +.+||+++  .|++++++.+.+
T Consensus       150 ~e~Sak~~--~gI~e~f~~l~~  169 (174)
T d1wmsa_         150 FETSAKDA--TNVAAAFEEAVR  169 (174)
T ss_dssp             EECCTTTC--TTHHHHHHHHHH
T ss_pred             EEEcCCCC--cCHHHHHHHHHH
Confidence            89999999  999999877753

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.99  E-value=7.8e-06  Score=66.52  Aligned_cols=87  Identities=17%  Similarity=0.244  Sum_probs=57.5

Q ss_pred             HHhhccCEEEEEEcCCCCCCCcC--HHHHHHHh---CCCCEEEEEEcccCCCccc--------------hHHHHHHHHhh
Q psy15351         10 KHLKNVDIVIEVHDSRMPFTGRN--HLLQQSVQ---NIRPMVLVLNKRDLINSKH--------------ESLIEEKVRKE   70 (352)
Q Consensus        10 ~~i~~aD~vl~VvDar~p~~~~~--~~l~~~l~---~~k~~ilVlNK~Dl~~~~~--------------~~~~~~~~~~~   70 (352)
                      ..+..+|++++|.|..++.+..+  ..+...+.   .+.|+++|.||+|+.+...              .++..++.++.
T Consensus        69 ~~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~  148 (177)
T d1kmqa_          69 LSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRI  148 (177)
T ss_dssp             GGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECGGGTTCHHHHHHHHHTTCCCCCHHHHHHHHHHT
T ss_pred             hhcccchhhhhhcccchhHHHHHHHHHHHHHHHHhCCCCceEEeeecccccchhhHHHHHHHhhcccccHHHHHHHHHHc
Confidence            35788999999999987643221  11222222   4689999999999976432              12223333333


Q ss_pred             cCCCCcEEEeecCCCCCCCHHHHHHHHHHH
Q psy15351         71 QSHISEVIFTNCRNPNCKGVQKILPTLQHI  100 (352)
Q Consensus        71 ~~~~~~v~~iSa~~~~~~gi~~L~~~i~~~  100 (352)
                      +..  +++.+||+++  .|++++++.+.+.
T Consensus       149 ~~~--~~~E~SAkt~--~gi~e~F~~i~~~  174 (177)
T d1kmqa_         149 GAF--GYMECSAKTK--DGVREVFEMATRA  174 (177)
T ss_dssp             TCS--EEEECCTTTC--TTHHHHHHHHHHH
T ss_pred             CCc--EEEEecCCCC--cCHHHHHHHHHHH
Confidence            322  4788999999  9999999887653

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.99  E-value=3.4e-06  Score=67.98  Aligned_cols=85  Identities=11%  Similarity=0.007  Sum_probs=58.0

Q ss_pred             HHhhccCEEEEEEcCCCCCCCcCH--HHHHHHh----CCCCEEEEEEcccCCCccc--hHHHHHHHHhhcCCCCcEEEee
Q psy15351         10 KHLKNVDIVIEVHDSRMPFTGRNH--LLQQSVQ----NIRPMVLVLNKRDLINSKH--ESLIEEKVRKEQSHISEVIFTN   81 (352)
Q Consensus        10 ~~i~~aD~vl~VvDar~p~~~~~~--~l~~~l~----~~k~~ilVlNK~Dl~~~~~--~~~~~~~~~~~~~~~~~v~~iS   81 (352)
                      .....+|++++|.|..++.+....  .+..+.+    .+.|+++|.||+|+.....  .++..++.++.+..   ++.+|
T Consensus        71 ~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~---~~e~S  147 (167)
T d1xtqa1          71 TYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAA---FLESS  147 (167)
T ss_dssp             GGTSSCCEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCE---EEECC
T ss_pred             hhhhhhhhhhhhcccchhhhhhhhhhhhhhhhhcccccccceeeeccccccccccchhHHHHHHHHHHcCCE---EEEEe
Confidence            356789999999999876443221  1112222    3579999999999965432  23344444455654   78899


Q ss_pred             cCCCCCCCHHHHHHHHHH
Q psy15351         82 CRNPNCKGVQKILPTLQH   99 (352)
Q Consensus        82 a~~~~~~gi~~L~~~i~~   99 (352)
                      |+++  .|++++++.|..
T Consensus       148 ak~~--~~v~~~f~~li~  163 (167)
T d1xtqa1         148 AKEN--QTAVDVFRRIIL  163 (167)
T ss_dssp             TTCH--HHHHHHHHHHHH
T ss_pred             cCCC--CCHHHHHHHHHH
Confidence            9999  999999887654

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.99  E-value=8.8e-06  Score=66.81  Aligned_cols=86  Identities=10%  Similarity=0.079  Sum_probs=57.2

Q ss_pred             HHhhccCEEEEEEcCCCCCCCcC--HHHHHHHh---CCCCEEEEEEcccCCCccc--------------hHHHHHHHHhh
Q psy15351         10 KHLKNVDIVIEVHDSRMPFTGRN--HLLQQSVQ---NIRPMVLVLNKRDLINSKH--------------ESLIEEKVRKE   70 (352)
Q Consensus        10 ~~i~~aD~vl~VvDar~p~~~~~--~~l~~~l~---~~k~~ilVlNK~Dl~~~~~--------------~~~~~~~~~~~   70 (352)
                      ..+..+|++++|.|++++.+..+  ..+...++   .+.|+++|.||+||.+...              .++..++.++.
T Consensus        76 ~~~~~a~~~ilv~d~t~~~Sf~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~r~v~~~~~~~~a~~~  155 (185)
T d2atxa1          76 LSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEI  155 (185)
T ss_dssp             GGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHH
T ss_pred             hcccccceeeeccccchHHHHHHHHHHHHHHHHhcCCCCCeeEeeeccccccchhhhhhhhhcccccccHHHHHHHHHHc
Confidence            35678999999999987643221  12222222   5679999999999976321              23333433344


Q ss_pred             cCCCCcEEEeecCCCCCCCHHHHHHHHHH
Q psy15351         71 QSHISEVIFTNCRNPNCKGVQKILPTLQH   99 (352)
Q Consensus        71 ~~~~~~v~~iSa~~~~~~gi~~L~~~i~~   99 (352)
                      +.-  .++.+||+++  .|++++++.+.+
T Consensus       156 ~~~--~~~E~SAk~~--~gv~e~F~~li~  180 (185)
T d2atxa1         156 GAC--CYVECSALTQ--KGLKTVFDEAII  180 (185)
T ss_dssp             TCS--CEEECCTTTC--TTHHHHHHHHHH
T ss_pred             CCC--EEEEecCCCC--cCHHHHHHHHHH
Confidence            422  3778999999  999999887654

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.98  E-value=5.2e-06  Score=67.43  Aligned_cols=61  Identities=23%  Similarity=0.200  Sum_probs=38.3

Q ss_pred             cceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCC--cEEEEeCCCCCCC
Q psy15351        167 YNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKP--LIYILDTPGISLP  234 (352)
Q Consensus       167 ~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~--~~~l~DtPGi~~~  234 (352)
                      +.++|+++|.+|||||||+|++.+...       ....+.++.+........++.  .+.++||+|....
T Consensus         5 ~~~Kv~lvG~~~vGKTsLi~r~~~~~f-------~~~~~~t~~~~~~~~~~~~~~~~~l~~~d~~g~~~~   67 (173)
T d2fn4a1           5 ETHKLVVVGGGGVGKSALTIQFIQSYF-------VSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEF   67 (173)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHHHSSC-------CSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTT
T ss_pred             CeEEEEEECCCCcCHHHHHHHHHhCCC-------CcccccccccceeeEeccCCeeeeeecccccccccc
Confidence            458999999999999999999986321       112222333322211122222  4678999998764

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.98  E-value=9.2e-06  Score=65.54  Aligned_cols=88  Identities=18%  Similarity=0.095  Sum_probs=60.3

Q ss_pred             HHHhhccCEEEEEEcCCCCCCCcCH-HHHHHH----h-CCCCEEEEEEcccCCCccc--hHHHHHHHHhhcCCCCcEEEe
Q psy15351          9 EKHLKNVDIVIEVHDSRMPFTGRNH-LLQQSV----Q-NIRPMVLVLNKRDLINSKH--ESLIEEKVRKEQSHISEVIFT   80 (352)
Q Consensus         9 ~~~i~~aD~vl~VvDar~p~~~~~~-~l~~~l----~-~~k~~ilVlNK~Dl~~~~~--~~~~~~~~~~~~~~~~~v~~i   80 (352)
                      ......+|.+++|.|..++.+...- .+..+.    . .+.|+++|.||+|+..+..  .++..++.++.+..   ++.+
T Consensus        67 ~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~r~V~~~e~~~~a~~~~~~---~~e~  143 (168)
T d2atva1          67 EGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATELACA---FYEC  143 (168)
T ss_dssp             HHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSE---EEEC
T ss_pred             hhhhcccccceeecccCCccchhhhhhhcccccccccccCcceeeeccchhhhhhccCcHHHHHHHHHHhCCe---EEEE
Confidence            3467789999999999876544332 111111    1 4689999999999965432  23444444555665   8899


Q ss_pred             ecCCCCCCC-HHHHHHHHHHHh
Q psy15351         81 NCRNPNCKG-VQKILPTLQHIS  101 (352)
Q Consensus        81 Sa~~~~~~g-i~~L~~~i~~~~  101 (352)
                      ||+++  .| +++++..+.+.+
T Consensus       144 Saktg--~gnV~e~F~~l~~~i  163 (168)
T d2atva1         144 SACTG--EGNITEIFYELCREV  163 (168)
T ss_dssp             CTTTC--TTCHHHHHHHHHHHH
T ss_pred             ccccC--CcCHHHHHHHHHHHH
Confidence            99999  85 999988776544

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.98  E-value=3.6e-06  Score=68.08  Aligned_cols=61  Identities=30%  Similarity=0.329  Sum_probs=38.5

Q ss_pred             ceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecC-CCcEEEEeCCCCCC
Q psy15351        168 NTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISE-KPLIYILDTPGISL  233 (352)
Q Consensus       168 ~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~-~~~~~l~DtPGi~~  233 (352)
                      .++|+++|.+|||||||++++.+..    -.....+++|.+.... .+...+ .-.+.++||+|...
T Consensus         3 ~iKi~vvG~~~vGKTsLi~~~~~~~----f~~~~~~t~~~~~~~~-~i~~~~~~~~l~i~d~~g~~~   64 (170)
T d1ek0a_           3 SIKLVLLGEAAVGKSSIVLRFVSND----FAENKEPTIGAAFLTQ-RVTINEHTVKFEIWDTAGQER   64 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSC----CCTTCCCCSSEEEEEE-EEEETTEEEEEEEEEECCSGG
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCC----CCccccccccceeecc-ccccccccccccccccCCchh
Confidence            4799999999999999999998631    1223344455332221 122111 12588999999754

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.97  E-value=1.3e-06  Score=71.04  Aligned_cols=23  Identities=17%  Similarity=0.405  Sum_probs=11.0

Q ss_pred             ceEEEEeCCCCCChHHHHHHHhC
Q psy15351        168 NTTVMVVGVPNVGKSSIINALRS  190 (352)
Q Consensus       168 ~~~v~i~G~pnvGKStliN~l~~  190 (352)
                      -++|+++|.+|||||||+++|.+
T Consensus         6 ~~Ki~vvG~~~vGKTsLi~~l~~   28 (173)
T d2fu5c1           6 LFKLLLIGDSGVGKTCVLFRFSE   28 (173)
T ss_dssp             EEEEEEECCCCC-----------
T ss_pred             EEEEEEECCCCcCHHHHHHHHHh
Confidence            47899999999999999999985

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.97  E-value=4.7e-06  Score=73.89  Aligned_cols=24  Identities=29%  Similarity=0.436  Sum_probs=21.9

Q ss_pred             ceEEEEeCCCCCChHHHHHHHhCC
Q psy15351        168 NTTVMVVGVPNVGKSSIINALRSS  191 (352)
Q Consensus       168 ~~~v~i~G~pnvGKStliN~l~~~  191 (352)
                      ..+|+|+|.-++|||||||+|+|.
T Consensus        26 ~P~ivvvG~~SsGKSsliNaLlg~   49 (299)
T d2akab1          26 LPQIAVVGGQSAGKSSVLENFVGR   49 (299)
T ss_dssp             CCEEEEEEBTTSCHHHHHHHHHTS
T ss_pred             CCeEEEEcCCCCCHHHHHHHHhCC
Confidence            457999999999999999999984

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.95  E-value=4.3e-06  Score=67.64  Aligned_cols=61  Identities=20%  Similarity=0.190  Sum_probs=38.0

Q ss_pred             ceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecC-CCcEEEEeCCCCCC
Q psy15351        168 NTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISE-KPLIYILDTPGISL  233 (352)
Q Consensus       168 ~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~-~~~~~l~DtPGi~~  233 (352)
                      .++|+++|.+|||||||++++...    .-.....+..+.+..... ..... .-.+.++||||-..
T Consensus         6 ~~Ki~vvG~~~vGKTsLi~~l~~~----~f~~~~~~t~~~~~~~~~-~~~~~~~~~~~~~d~~g~~~   67 (170)
T d1r2qa_           6 QFKLVLLGESAVGKSSLVLRFVKG----QFHEFQESTIGAAFLTQT-VCLDDTTVKFEIWDTAGQER   67 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS----CCCTTCCCCSSEEEEEEE-EEETTEEEEEEEEEECCSGG
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhC----CCCcccccccccccccce-eeccceEEEEEeccCCCchh
Confidence            478999999999999999999852    112223344444433221 11111 12578899999653

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.93  E-value=8.9e-06  Score=65.66  Aligned_cols=60  Identities=25%  Similarity=0.258  Sum_probs=36.6

Q ss_pred             ceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCC--cEEEEeCCCCCCC
Q psy15351        168 NTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKP--LIYILDTPGISLP  234 (352)
Q Consensus       168 ~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~--~~~l~DtPGi~~~  234 (352)
                      .++|+++|.+|||||||+|++.+...    .   .....|..+........++.  .+.++||+|....
T Consensus         2 ~~Ki~viG~~~vGKTsLi~r~~~~~f----~---~~~~~T~~~~~~~~~~~~~~~~~l~~~d~~g~~~~   63 (171)
T d2erxa1           2 DYRVAVFGAGGVGKSSLVLRFVKGTF----R---ESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQF   63 (171)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHTCCC----C---SSCCCCSCEEEEEEEEETTEEEEEEEEECCSCSSC
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCCC----C---CccCcceeeccccceeeccccceeccccccccccc
Confidence            47899999999999999999986321    1   11222222221122222232  4677999997653

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.93  E-value=1.3e-05  Score=66.21  Aligned_cols=89  Identities=16%  Similarity=0.097  Sum_probs=61.2

Q ss_pred             HHhhccCEEEEEEcCCCCCCCcCH-HHHHHHh----CCCCEEEEEEcccCCCccc--hHHHHHHHHhhcCCCCcEEEeec
Q psy15351         10 KHLKNVDIVIEVHDSRMPFTGRNH-LLQQSVQ----NIRPMVLVLNKRDLINSKH--ESLIEEKVRKEQSHISEVIFTNC   82 (352)
Q Consensus        10 ~~i~~aD~vl~VvDar~p~~~~~~-~l~~~l~----~~k~~ilVlNK~Dl~~~~~--~~~~~~~~~~~~~~~~~v~~iSa   82 (352)
                      ..+..+|++|+|+|..++.+.... .+...+.    ...|+++|.||+|+.+...  .+....+.+..+..   ++.+||
T Consensus        74 ~~~~~a~~~i~v~d~t~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~---~~e~SA  150 (194)
T d2bcgy1          74 SYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMP---FLETSA  150 (194)
T ss_dssp             GGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCC---EEECCT
T ss_pred             HHhccCCEEEEEEeCcchhhhhhHhhhhhhhhhcccCCceEEEEEeccccccccchhHHHHhhhhhccCcc---eEEEec
Confidence            356889999999999865332221 1111121    4679999999999986543  33444444445555   899999


Q ss_pred             CCCCCCCHHHHHHHHHHHhhh
Q psy15351         83 RNPNCKGVQKILPTLQHISDN  103 (352)
Q Consensus        83 ~~~~~~gi~~L~~~i~~~~~~  103 (352)
                      +++  .|++++++.+.+.+..
T Consensus       151 k~g--~gi~e~f~~l~~~i~~  169 (194)
T d2bcgy1         151 LDS--TNVEDAFLTMARQIKE  169 (194)
T ss_dssp             TTC--TTHHHHHHHHHHHHHH
T ss_pred             CcC--ccHHHHHHHHHHHHHH
Confidence            999  9999999888765543

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.91  E-value=7.7e-06  Score=65.86  Aligned_cols=60  Identities=18%  Similarity=0.103  Sum_probs=36.0

Q ss_pred             ceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCC--CcEEEEeCCCCCC
Q psy15351        168 NTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEK--PLIYILDTPGISL  233 (352)
Q Consensus       168 ~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~--~~~~l~DtPGi~~  233 (352)
                      .++|+++|.+|||||||++++.+...    .....++.+......  ....++  -.+.++||+|-..
T Consensus         3 ~fKivlvG~~~vGKTsLi~r~~~~~f----~~~~~~t~~~~~~~~--~~~~~~~~~~~~~~d~~g~~~   64 (167)
T d1z08a1           3 SFKVVLLGEGCVGKTSLVLRYCENKF----NDKHITTLGASFLTK--KLNIGGKRVNLAIWDTAGQER   64 (167)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHHHCCC----CSSCCCCCSCEEEEE--EEESSSCEEEEEEEECCCC--
T ss_pred             eEEEEEECCCCcCHHHHHHHHHhCCC----Ccccccccccchhee--eeccCCccceeeeeccCCcce
Confidence            37899999999999999999986211    112222233332221  112222  2578999999754

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.91  E-value=7.1e-06  Score=66.02  Aligned_cols=62  Identities=16%  Similarity=0.268  Sum_probs=37.0

Q ss_pred             cceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCC-CcEEEEeCCCCCCC
Q psy15351        167 YNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEK-PLIYILDTPGISLP  234 (352)
Q Consensus       167 ~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~-~~~~l~DtPGi~~~  234 (352)
                      +.++|+++|.+|||||||+|++.+...    .....++.+  .+....+.+.+. -.+.++||+|....
T Consensus         3 k~~Kv~liG~~~vGKTsLl~~~~~~~f----~~~~~~t~~--~~~~~~~~~~~~~~~l~i~d~~g~~~~   65 (167)
T d1xtqa1           3 KSRKIAILGYRSVGKSSLTIQFVEGQF----VDSYDPTIE--NTFTKLITVNGQEYHLQLVDTAGQDEY   65 (167)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHSCC----CSCCCSSCC--EEEEEEEEETTEEEEEEEEECCCCCTT
T ss_pred             cceEEEEECCCCcCHHHHHHHHHhCCC----CcccCccee--cccceEEecCcEEEEeeeccccccccc
Confidence            357899999999999999999985211    111112222  221112222221 14678999998754

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.91  E-value=6.1e-06  Score=66.44  Aligned_cols=60  Identities=30%  Similarity=0.343  Sum_probs=36.5

Q ss_pred             ceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCC--cEEEEeCCCCCCC
Q psy15351        168 NTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKP--LIYILDTPGISLP  234 (352)
Q Consensus       168 ~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~--~~~l~DtPGi~~~  234 (352)
                      .++|+++|.+|||||||+|++++...    .....+..+.+..  .... ..+.  .+.++|+||....
T Consensus         3 e~Ki~viG~~~vGKTsli~~l~~~~~----~~~~~~~~~~~~~--~~~~-~~~~~~~l~~~d~~~~~~~   64 (166)
T d1ctqa_           3 EYKLVVVGAGGVGKSALTIQLIQNHF----VDEYDPTIEDSYR--KQVV-IDGETCLLDILDTAGQEEY   64 (166)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHCCC----CCSCCCCSEEEEE--EEEE-ETTEEEEEEEEEECCCGGG
T ss_pred             eeEEEEECCCCCCHHHHHHHHHhCCC----CCccCCccceeec--ccee-eeceeeeeeeeeccCcccc
Confidence            47899999999999999999986311    1111222222211  1222 2222  4678999997653

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.90  E-value=5.5e-06  Score=67.87  Aligned_cols=26  Identities=23%  Similarity=0.345  Sum_probs=23.7

Q ss_pred             CcceEEEEeCCCCCChHHHHHHHhCC
Q psy15351        166 VYNTTVMVVGVPNVGKSSIINALRSS  191 (352)
Q Consensus       166 ~~~~~v~i~G~pnvGKStliN~l~~~  191 (352)
                      ++.++|+++|.+|||||||+|++...
T Consensus         3 p~~iKivviG~~~vGKTsli~~~~~~   28 (183)
T d1mh1a_           3 PQAIKCVVVGDGAVGKTCLLISYTTN   28 (183)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ceeEEEEEECCCCCCHHHHHHHHHhC
Confidence            56799999999999999999999863

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.90  E-value=7.1e-06  Score=66.05  Aligned_cols=23  Identities=30%  Similarity=0.458  Sum_probs=21.7

Q ss_pred             ceEEEEeCCCCCChHHHHHHHhC
Q psy15351        168 NTTVMVVGVPNVGKSSIINALRS  190 (352)
Q Consensus       168 ~~~v~i~G~pnvGKStliN~l~~  190 (352)
                      .++|+++|.+|||||||+|++.+
T Consensus         3 ~~Ki~lvG~~~vGKTsLi~r~~~   25 (167)
T d1kaoa_           3 EYKVVVLGSGGVGKSALTVQFVT   25 (167)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHH
T ss_pred             eeEEEEECCCCcCHHHHHHHHHh
Confidence            58999999999999999999986

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=97.87  E-value=3.9e-05  Score=60.43  Aligned_cols=91  Identities=19%  Similarity=0.088  Sum_probs=60.0

Q ss_pred             HHHHHhhccCEEEEEEcCCCCCCCcC--HHHHHHHh----CCCCEEEEEEcccCCCccchHHHHHHHHhhcC--CCCcEE
Q psy15351          7 DIEKHLKNVDIVIEVHDSRMPFTGRN--HLLQQSVQ----NIRPMVLVLNKRDLINSKHESLIEEKVRKEQS--HISEVI   78 (352)
Q Consensus         7 ~~~~~i~~aD~vl~VvDar~p~~~~~--~~l~~~l~----~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~--~~~~v~   78 (352)
                      ........+|.++++.|..++.....  ..+.+++.    ...|+++|.||.|+.+.....+..........  ...+++
T Consensus        60 ~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~k~d~~~~~~~~~i~~~~~~~~~~~~~~~~~  139 (160)
T d1r8sa_          60 LWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQ  139 (160)
T ss_dssp             HHHHHTTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEE
T ss_pred             hhhhhhccceeEEEEEEecChHHHHHHHHHHHHHHHhhcccCceEEEEeecccccccccHHHHHHHHHHHHHhhCCCEEE
Confidence            34567889999999999987643322  12223332    46789999999999876544433322211111  011478


Q ss_pred             EeecCCCCCCCHHHHHHHHHH
Q psy15351         79 FTNCRNPNCKGVQKILPTLQH   99 (352)
Q Consensus        79 ~iSa~~~~~~gi~~L~~~i~~   99 (352)
                      .+||++|  +|+++++++|.+
T Consensus       140 ~~SAktg--~gi~e~~~~l~~  158 (160)
T d1r8sa_         140 ATCATSG--DGLYEGLDWLSN  158 (160)
T ss_dssp             ECBTTTT--BTHHHHHHHHHH
T ss_pred             EeECCCC--CCHHHHHHHHHh
Confidence            8999999  999999999865

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.86  E-value=2.2e-05  Score=63.68  Aligned_cols=88  Identities=23%  Similarity=0.029  Sum_probs=60.9

Q ss_pred             HHhhccCEEEEEEcCCCCCCCcC--HHHHHHHh----CCCCEEEEEEcccCCCccc-hHHHHHHHHhhcCCCCcEEEeec
Q psy15351         10 KHLKNVDIVIEVHDSRMPFTGRN--HLLQQSVQ----NIRPMVLVLNKRDLINSKH-ESLIEEKVRKEQSHISEVIFTNC   82 (352)
Q Consensus        10 ~~i~~aD~vl~VvDar~p~~~~~--~~l~~~l~----~~k~~ilVlNK~Dl~~~~~-~~~~~~~~~~~~~~~~~v~~iSa   82 (352)
                      ..+..+|++++|+|..++.+...  ..+.++.+    ...|++++.||.|...... ..+..++.++.+..   ++.+||
T Consensus        75 ~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~i~~~~nk~d~~~~~v~~~~~~~~~~~~~~~---~~e~Sa  151 (177)
T d1x3sa1          75 SYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVDRNEGLKFARKHSML---FIEASA  151 (177)
T ss_dssp             HHHTTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCCSCHHHHHHHHHHTTCE---EEECCT
T ss_pred             HHHhcCCEEEEEEECCCccccccchhhhhhhcccccccceeeEEEeeccccccccccHHHHHHHHHHCCCE---EEEEeC
Confidence            46789999999999886533222  11212222    3578899999999875443 34455555566665   899999


Q ss_pred             CCCCCCCHHHHHHHHHHHhh
Q psy15351         83 RNPNCKGVQKILPTLQHISD  102 (352)
Q Consensus        83 ~~~~~~gi~~L~~~i~~~~~  102 (352)
                      +++  .|++++++++.+.+-
T Consensus       152 ~tg--~gv~e~f~~l~~~l~  169 (177)
T d1x3sa1         152 KTC--DGVQCAFEELVEKII  169 (177)
T ss_dssp             TTC--TTHHHHHHHHHHHHH
T ss_pred             CCC--CCHHHHHHHHHHHHc
Confidence            999  999999987765443

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.85  E-value=1.3e-05  Score=64.68  Aligned_cols=59  Identities=22%  Similarity=0.290  Sum_probs=36.0

Q ss_pred             ceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCC--cEEEEeCCCCCC
Q psy15351        168 NTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKP--LIYILDTPGISL  233 (352)
Q Consensus       168 ~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~--~~~l~DtPGi~~  233 (352)
                      .++|+++|.+|||||||++++.+...    .....++-|..  ....+. ..+.  .+.++||||-..
T Consensus         2 eiKi~lvG~~~vGKTsli~r~~~~~f----~~~~~pTi~~~--~~~~~~-~~~~~~~l~i~D~~g~~~   62 (168)
T d2atva1           2 EVKLAIFGRAGVGKSALVVRFLTKRF----IWEYDPTLEST--YRHQAT-IDDEVVSMEILDTAGQED   62 (168)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHSCC----CSCCCTTCCEE--EEEEEE-ETTEEEEEEEEECCCCCC
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhCCC----CCccCCceecc--cccccc-ccccceEEEEeecccccc
Confidence            47899999999999999999996321    11111222221  111122 2222  578899999754

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.85  E-value=3.9e-06  Score=68.04  Aligned_cols=22  Identities=18%  Similarity=0.357  Sum_probs=20.1

Q ss_pred             eEEEEeCCCCCChHHHHHHHhC
Q psy15351        169 TTVMVVGVPNVGKSSIINALRS  190 (352)
Q Consensus       169 ~~v~i~G~pnvGKStliN~l~~  190 (352)
                      ++|+++|.+|||||||+|++.+
T Consensus         4 ~Ki~vvG~~~vGKTsli~~~~~   25 (170)
T d1i2ma_           4 FKLVLVGDGGTGKTTFVKRHLT   25 (170)
T ss_dssp             EEEEEEECTTSSHHHHHHTTC-
T ss_pred             EEEEEECCCCcCHHHHHHHHHh
Confidence            6899999999999999999985

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.83  E-value=1e-05  Score=64.77  Aligned_cols=62  Identities=21%  Similarity=0.187  Sum_probs=38.2

Q ss_pred             ceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCCcEEEEeCCCCCC
Q psy15351        168 NTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISL  233 (352)
Q Consensus       168 ~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~~  233 (352)
                      .++|+++|.+|||||||+|++....    -.......++.+..............+.++|++|...
T Consensus         2 ~~Kv~liG~~~vGKTsLl~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   63 (165)
T d1z06a1           2 IFKIIVIGDSNVGKTCLTYRFCAGR----FPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQER   63 (165)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSS----CCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHH
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCC----CCCccCcccccccceeeeeeeccceEEEEEeccCchh
Confidence            3789999999999999999998631    1222333444333322211111223578899998643

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.82  E-value=1.7e-05  Score=64.74  Aligned_cols=85  Identities=14%  Similarity=0.141  Sum_probs=55.5

Q ss_pred             HhhccCEEEEEEcCCCCCCCcC--HHHHHHHh---CCCCEEEEEEcccCCCccch--------------HHHHHHHHhhc
Q psy15351         11 HLKNVDIVIEVHDSRMPFTGRN--HLLQQSVQ---NIRPMVLVLNKRDLINSKHE--------------SLIEEKVRKEQ   71 (352)
Q Consensus        11 ~i~~aD~vl~VvDar~p~~~~~--~~l~~~l~---~~k~~ilVlNK~Dl~~~~~~--------------~~~~~~~~~~~   71 (352)
                      .+..+|++++|.|+.++.+..+  ..+...++   .+.|+++|.||+|+.+....              .+...+.++.+
T Consensus        73 ~~~~~~~~ilv~d~~~~~sf~~i~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~  152 (183)
T d1mh1a_          73 SYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIG  152 (183)
T ss_dssp             GCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTT
T ss_pred             cccccceeeeeeccchHHHHHHHHHHHHHHHHHhCCCCcEEEEeecccchhhhhhhhhhhhccccchhhHHHHHHHHHcC
Confidence            5678999999999987643221  11222222   46799999999998654321              12222223333


Q ss_pred             CCCCcEEEeecCCCCCCCHHHHHHHHHH
Q psy15351         72 SHISEVIFTNCRNPNCKGVQKILPTLQH   99 (352)
Q Consensus        72 ~~~~~v~~iSa~~~~~~gi~~L~~~i~~   99 (352)
                      .-  .++.+||+++  .|+++++..+.+
T Consensus       153 ~~--~~~E~SAk~~--~~V~e~F~~l~~  176 (183)
T d1mh1a_         153 AV--KYLECSALTQ--RGLKTVFDEAIR  176 (183)
T ss_dssp             CS--EEEECCTTTC--TTHHHHHHHHHH
T ss_pred             Cc--eEEEcCCCCC--cCHHHHHHHHHH
Confidence            11  4788999999  999999887764

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.80  E-value=4e-05  Score=61.66  Aligned_cols=86  Identities=12%  Similarity=0.041  Sum_probs=59.9

Q ss_pred             HhhccCEEEEEEcCCCCCCCcCH--HHHHHHh---CCCCEEEEEEcccCCCccc--hHHHHHHHHhhcCCCCcEEEeecC
Q psy15351         11 HLKNVDIVIEVHDSRMPFTGRNH--LLQQSVQ---NIRPMVLVLNKRDLINSKH--ESLIEEKVRKEQSHISEVIFTNCR   83 (352)
Q Consensus        11 ~i~~aD~vl~VvDar~p~~~~~~--~l~~~l~---~~k~~ilVlNK~Dl~~~~~--~~~~~~~~~~~~~~~~~v~~iSa~   83 (352)
                      ....+|++++|+|..++.+....  .+....+   ...|+++|.||+|+.....  .++..++.++.+..   ++.+||+
T Consensus        76 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~~k~d~~~~~~v~~~~~~~~~~~~~~~---~~e~Sak  152 (170)
T d2g6ba1          76 YYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLP---FMETSAK  152 (170)
T ss_dssp             CGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCCSCHHHHHHHHHHHTCC---EEECCTT
T ss_pred             hhcCCceeEEEecCCcccchhhhhhhhhhhhhccCCCceEEEEEeeechhhcccccHHHHHHHHHHcCCE---EEEEeCC
Confidence            56899999999999865433221  1112222   4678999999999987543  23334444555665   9999999


Q ss_pred             CCCCCCHHHHHHHHHHHh
Q psy15351         84 NPNCKGVQKILPTLQHIS  101 (352)
Q Consensus        84 ~~~~~gi~~L~~~i~~~~  101 (352)
                      ++  .|++++++.|.+.+
T Consensus       153 ~g--~gi~e~f~~l~~~i  168 (170)
T d2g6ba1         153 TG--LNVDLAFTAIAKEL  168 (170)
T ss_dssp             TC--TTHHHHHHHHHHHH
T ss_pred             CC--cCHHHHHHHHHHHc
Confidence            99  99999998886543

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.80  E-value=1.2e-05  Score=66.03  Aligned_cols=25  Identities=24%  Similarity=0.355  Sum_probs=22.7

Q ss_pred             CcceEEEEeCCCCCChHHHHHHHhC
Q psy15351        166 VYNTTVMVVGVPNVGKSSIINALRS  190 (352)
Q Consensus       166 ~~~~~v~i~G~pnvGKStliN~l~~  190 (352)
                      ...++|+++|.+|||||||++++..
T Consensus         7 ~~~~Ki~lvG~~~vGKTsLi~r~~~   31 (185)
T d2atxa1           7 ALMLKCVVVGDGAVGKTCLLMSYAN   31 (185)
T ss_dssp             EEEEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CcEEEEEEECCCCCCHHHHHHHHhh
Confidence            3568999999999999999999986

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.80  E-value=1.2e-05  Score=65.49  Aligned_cols=59  Identities=17%  Similarity=0.213  Sum_probs=36.8

Q ss_pred             cceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCC--cEEEEeCCCCCC
Q psy15351        167 YNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKP--LIYILDTPGISL  233 (352)
Q Consensus       167 ~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~--~~~l~DtPGi~~  233 (352)
                      +.++|+++|.+|||||||++++.+.     ......+..+.+  ....+.+ ++.  .+.++||+|...
T Consensus         4 p~~ki~vlG~~~vGKTsLi~~~~~~-----~f~~~~~t~~~~--~~~~i~v-~~~~~~l~i~Dt~g~~~   64 (175)
T d2bmja1           4 PELRLGVLGDARSGKSSLIHRFLTG-----SYQVLEKTESEQ--YKKEMLV-DGQTHLVLIREEAGAPD   64 (175)
T ss_dssp             CEEEEEEECCTTTTHHHHHHHHHHS-----CCCCCCCSSCEE--EEEEEEE-TTEEEEEEEEECSSCCC
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHhC-----CCCCcCCcccee--EEEEeec-CceEEEEEEeecccccc
Confidence            4689999999999999999999863     211212222211  1112222 232  477899999653

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.79  E-value=1.8e-05  Score=63.75  Aligned_cols=88  Identities=14%  Similarity=0.078  Sum_probs=60.7

Q ss_pred             HHHhhccCEEEEEEcCCCCCCCcCHH--HHHHHh---CCCCEEEEEEcccCCCccc-----hHHHHHHHHhhcCCCCcEE
Q psy15351          9 EKHLKNVDIVIEVHDSRMPFTGRNHL--LQQSVQ---NIRPMVLVLNKRDLINSKH-----ESLIEEKVRKEQSHISEVI   78 (352)
Q Consensus         9 ~~~i~~aD~vl~VvDar~p~~~~~~~--l~~~l~---~~k~~ilVlNK~Dl~~~~~-----~~~~~~~~~~~~~~~~~v~   78 (352)
                      ...+..+|++++|.|..++.+..+..  +.....   ...|.++|.||+|+.+...     ..+..++.++.+..   ++
T Consensus        70 ~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~v~nk~d~~~~~~~~~v~~~~~~~~~~~~~~~---~~  146 (170)
T d1ek0a_          70 PMYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDMLQEGGERKVAREEGEKLAEEKGLL---FF  146 (170)
T ss_dssp             HHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCE---EE
T ss_pred             HHHHhccceEEEEEeCCcccchhhhhhhhhhhccccccccceeeeecccccccccchhhhhHHHHHHHHHHcCCE---EE
Confidence            34688999999999998764332211  111111   4678999999999864321     23444555555665   89


Q ss_pred             EeecCCCCCCCHHHHHHHHHHHh
Q psy15351         79 FTNCRNPNCKGVQKILPTLQHIS  101 (352)
Q Consensus        79 ~iSa~~~~~~gi~~L~~~i~~~~  101 (352)
                      .+||+++  .|+++++..|.+.+
T Consensus       147 e~Sak~g--~gV~e~F~~i~~~i  167 (170)
T d1ek0a_         147 ETSAKTG--ENVNDVFLGIGEKI  167 (170)
T ss_dssp             ECCTTTC--TTHHHHHHHHHTTS
T ss_pred             EecCCCC--cCHHHHHHHHHHHh
Confidence            9999999  99999998876543

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.78  E-value=3.9e-05  Score=61.38  Aligned_cols=88  Identities=20%  Similarity=0.115  Sum_probs=61.8

Q ss_pred             HHhhccCEEEEEEcCCCCCCCcCHH-HHHHH-h---CCCCEEEEEEcccCCCccc-hHHHHHHHHhhcCCCCcEEEeecC
Q psy15351         10 KHLKNVDIVIEVHDSRMPFTGRNHL-LQQSV-Q---NIRPMVLVLNKRDLINSKH-ESLIEEKVRKEQSHISEVIFTNCR   83 (352)
Q Consensus        10 ~~i~~aD~vl~VvDar~p~~~~~~~-l~~~l-~---~~k~~ilVlNK~Dl~~~~~-~~~~~~~~~~~~~~~~~v~~iSa~   83 (352)
                      ..++++|.+++|+|..++-+..+.. +.... .   ...|.+++.||.|+.+... .++..++..+.+.+   ++.+||+
T Consensus        70 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~i~~~~k~d~~~~~~~~~~~~~~~~~~~~~---~~~~Sa~  146 (166)
T d1g16a_          70 AYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEALAKELGIP---FIESSAK  146 (166)
T ss_dssp             HHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTCCSCHHHHHHHHHHHTCC---EEECBTT
T ss_pred             HHHhcCCEEEEEEECCCccCHHHHHhhhhhhhccccCcceeeeecchhhhhhhhhhHHHHHHHHHhcCCe---EEEECCC
Confidence            4678999999999999864332211 11111 1   4578899999999876543 33334444455665   9999999


Q ss_pred             CCCCCCHHHHHHHHHHHhh
Q psy15351         84 NPNCKGVQKILPTLQHISD  102 (352)
Q Consensus        84 ~~~~~gi~~L~~~i~~~~~  102 (352)
                      ++  +|++++++.|.+.+.
T Consensus       147 ~~--~~v~e~f~~l~~~i~  163 (166)
T d1g16a_         147 ND--DNVNEIFFTLAKLIQ  163 (166)
T ss_dssp             TT--BSHHHHHHHHHHHHH
T ss_pred             CC--CCHHHHHHHHHHHHH
Confidence            99  999999998877654

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.76  E-value=1.8e-05  Score=63.83  Aligned_cols=62  Identities=26%  Similarity=0.276  Sum_probs=34.9

Q ss_pred             cceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCC-CcEEEEeCCCCCCC
Q psy15351        167 YNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEK-PLIYILDTPGISLP  234 (352)
Q Consensus       167 ~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~-~~~~l~DtPGi~~~  234 (352)
                      ..++|+++|.||||||||+|++.....    .....++.+.+..  ..+...+. -.+.++||||....
T Consensus         4 ~~~Ki~lvG~~~vGKTsLi~r~~~~~f----~~~~~~t~~~~~~--~~~~~~~~~~~~~~~d~~g~~~~   66 (171)
T d2erya1           4 EKYRLVVVGGGGVGKSALTIQFIQSYF----VTDYDPTIEDSYT--KQCVIDDRAARLDILDTAGQEEF   66 (171)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHHHSCC----CSSCCTTCCEEEE--EEEEETTEEEEEEEEECC----C
T ss_pred             cceEEEEECCCCCCHHHHHHHHHhCCC----CcccCccccccee--eeeeecccccccccccccccccc
Confidence            348999999999999999999986311    1122223332221  12222221 15789999998764

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.72  E-value=1.1e-05  Score=66.09  Aligned_cols=23  Identities=17%  Similarity=0.375  Sum_probs=21.5

Q ss_pred             ceEEEEeCCCCCChHHHHHHHhC
Q psy15351        168 NTTVMVVGVPNVGKSSIINALRS  190 (352)
Q Consensus       168 ~~~v~i~G~pnvGKStliN~l~~  190 (352)
                      -++|+++|.||||||||+|++.+
T Consensus         5 ~~Ki~ivG~~~vGKTsLi~~l~~   27 (186)
T d2f7sa1           5 LIKLLALGDSGVGKTTFLYRYTD   27 (186)
T ss_dssp             EEEEEEESCTTSSHHHHHHHHHC
T ss_pred             EEEEEEECCCCcCHHHHHHHHhc
Confidence            47899999999999999999996

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=97.72  E-value=2.5e-05  Score=62.86  Aligned_cols=59  Identities=25%  Similarity=0.285  Sum_probs=33.9

Q ss_pred             ceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCC--cEEEEeCCCCCC
Q psy15351        168 NTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKP--LIYILDTPGISL  233 (352)
Q Consensus       168 ~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~--~~~l~DtPGi~~  233 (352)
                      -++|+++|.+|||||||+|++.....    .....++.|.+-  ...+.. ++.  .+.++||||...
T Consensus         4 ~~KivlvG~~~vGKTsli~~~~~~~f----~~~~~~T~~~~~--~~~~~~-~~~~~~l~i~d~~g~~~   64 (168)
T d1u8za_           4 LHKVIMVGSGGVGKSALTLQFMYDEF----VEDYEPTKADSY--RKKVVL-DGEEVQIDILDTAGQED   64 (168)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCC----CSCCCTTCCEEE--EEEEEE-TTEEEEEEEEECCC---
T ss_pred             eeEEEEECCCCcCHHHHHHHHHhCCC----CcccCCcccccc--cccccc-ccccccccccccccccc
Confidence            46899999999999999999985211    111122222211  111222 222  567899999865

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.71  E-value=2.1e-05  Score=64.70  Aligned_cols=59  Identities=17%  Similarity=0.207  Sum_probs=35.9

Q ss_pred             ceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCC--cEEEEeCCCCCC
Q psy15351        168 NTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKP--LIYILDTPGISL  233 (352)
Q Consensus       168 ~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~--~~~l~DtPGi~~  233 (352)
                      .++|+++|.+|||||||++++.....      .....| |............+.  .+.++||||-..
T Consensus         3 ~iKvvllG~~~vGKTSli~r~~~~~f------~~~~~~-t~~~~~~~~~~~~~~~~~l~i~D~~g~~~   63 (191)
T d2ngra_           3 TIKCVVVGDGAVGKTCLLISYTTNKF------PSEYVP-TVFDNYAVTVMIGGEPYTLGLFDTAGQED   63 (191)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCC------CSSCCC-CSEEEEEEEEEETTEEEEEEEEEECCSGG
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhCCC------CCCcCC-ceeeecceeEeeCCceeeeeccccccchh
Confidence            47899999999999999999986211      111112 221211122222222  578899999653

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=97.69  E-value=0.00012  Score=57.94  Aligned_cols=92  Identities=17%  Similarity=0.089  Sum_probs=60.7

Q ss_pred             HHhhccCEEEEEEcCCCCCCCcCHH--HHHHHh----CCCCEEEEEEcccCCCccchHHHHHHHHhhcC--CCCcEEEee
Q psy15351         10 KHLKNVDIVIEVHDSRMPFTGRNHL--LQQSVQ----NIRPMVLVLNKRDLINSKHESLIEEKVRKEQS--HISEVIFTN   81 (352)
Q Consensus        10 ~~i~~aD~vl~VvDar~p~~~~~~~--l~~~l~----~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~--~~~~v~~iS   81 (352)
                      .....++.+++++|..+........  +...+.    ...|+++|.||.|+.......+....+.....  ...+++.+|
T Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iv~nk~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~S  147 (169)
T d1upta_          68 CYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTS  147 (169)
T ss_dssp             GGCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCTTSCEEEEECC
T ss_pred             hhhhhhhhhhhhhhhhhcchhhhccchhhhhhhhhccccceEEEEEeeccccccccHHHHHHHHHHHHHhcCCCEEEEEe
Confidence            4567789999999987654332211  112222    46788999999999876654444443321111  112588999


Q ss_pred             cCCCCCCCHHHHHHHHHHHhhh
Q psy15351         82 CRNPNCKGVQKILPTLQHISDN  103 (352)
Q Consensus        82 a~~~~~~gi~~L~~~i~~~~~~  103 (352)
                      |+++  +|+++++++|.+.+.+
T Consensus       148 A~~g--~gv~e~~~~l~~~l~~  167 (169)
T d1upta_         148 ATKG--TGLDEAMEWLVETLKS  167 (169)
T ss_dssp             TTTC--TTHHHHHHHHHHHHHT
T ss_pred             CCCC--CCHHHHHHHHHHHHHh
Confidence            9999  9999999999876653

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.69  E-value=1.8e-05  Score=64.17  Aligned_cols=22  Identities=18%  Similarity=0.351  Sum_probs=20.6

Q ss_pred             eEEEEeCCCCCChHHHHHHHhC
Q psy15351        169 TTVMVVGVPNVGKSSIINALRS  190 (352)
Q Consensus       169 ~~v~i~G~pnvGKStliN~l~~  190 (352)
                      .+|+++|.+|||||||++++..
T Consensus         3 ~KivvvG~~~vGKTsLi~~~~~   24 (177)
T d1kmqa_           3 KKLVIVGDGACGKTCLLIVNSK   24 (177)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHh
Confidence            5799999999999999999986

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.68  E-value=2.4e-05  Score=63.22  Aligned_cols=23  Identities=30%  Similarity=0.508  Sum_probs=21.5

Q ss_pred             ceEEEEeCCCCCChHHHHHHHhC
Q psy15351        168 NTTVMVVGVPNVGKSSIINALRS  190 (352)
Q Consensus       168 ~~~v~i~G~pnvGKStliN~l~~  190 (352)
                      .++|+++|.+|||||||+|++.+
T Consensus         3 ~~Kv~lvG~~~vGKTsLi~~~~~   25 (172)
T d2g3ya1           3 YYRVVLIGEQGVGKSTLANIFAG   25 (172)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHC
T ss_pred             EEEEEEECCCCcCHHHHHHHHHh
Confidence            47899999999999999999986

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.65  E-value=3.7e-05  Score=61.91  Aligned_cols=62  Identities=21%  Similarity=0.245  Sum_probs=37.2

Q ss_pred             cceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecC-CCcEEEEeCCCCCCC
Q psy15351        167 YNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISE-KPLIYILDTPGISLP  234 (352)
Q Consensus       167 ~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~-~~~~~l~DtPGi~~~  234 (352)
                      +.++|+++|.+|||||||++++.+...    .....++.+.+.  ...+.... .-.+.++||+|....
T Consensus         3 pt~Ki~lvG~~~vGKTsll~~~~~~~~----~~~~~~t~~~~~--~~~~~~~~~~~~~~i~d~~g~~~~   65 (169)
T d1x1ra1           3 PTYKLVVVGDGGVGKSALTIQFFQKIF----VPDYDPTIEDSY--LKHTEIDNQWAILDVLDTAGQEEF   65 (169)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSSC----CTTCCTTCCEEE--EEEEEETTEEEEEEEEECCSCGGG
T ss_pred             CcEEEEEECCCCcCHHHHHHHHHhCCC----CcccCcceeecc--cccccccccccccccccccccccc
Confidence            458999999999999999999986321    111112222111  11121211 114679999998654

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=97.63  E-value=2.8e-05  Score=64.87  Aligned_cols=25  Identities=24%  Similarity=0.414  Sum_probs=22.9

Q ss_pred             CcceEEEEeCCCCCChHHHHHHHhC
Q psy15351        166 VYNTTVMVVGVPNVGKSSIINALRS  190 (352)
Q Consensus       166 ~~~~~v~i~G~pnvGKStliN~l~~  190 (352)
                      .+.++|+++|..+.|||||+|+|++
T Consensus         6 ~p~ini~iiGhVd~GKSTL~~~L~~   30 (205)
T d2qn6a3           6 QPEVNIGVVGHVDHGKTTLVQAITG   30 (205)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHS
T ss_pred             CCCeEEEEEEccCCcHHHHHHHHHh
Confidence            4668999999999999999999986

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.62  E-value=4.1e-05  Score=61.38  Aligned_cols=60  Identities=23%  Similarity=0.288  Sum_probs=36.8

Q ss_pred             ceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCC--cEEEEeCCCCCCC
Q psy15351        168 NTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKP--LIYILDTPGISLP  234 (352)
Q Consensus       168 ~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~--~~~l~DtPGi~~~  234 (352)
                      .++|+++|.+|||||||++++.....    .....+..+...  ...+. .++.  .+.++|++|....
T Consensus         3 ~~KivvvG~~~vGKTsli~r~~~~~f----~~~~~~t~~~~~--~~~~~-~~~~~~~~~~~d~~g~~~~   64 (167)
T d1c1ya_           3 EYKLVVLGSGGVGKSALTVQFVQGIF----VEKYDPTIEDSY--RKQVE-VDCQQCMLEILDTAGTEQF   64 (167)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHCCC----CCSCCCCSEEEE--EEEEE-SSSCEEEEEEEEECSSCSS
T ss_pred             eeEEEEECCCCCCHHHHHHHHHcCCC----CCccCCcccccc--ceeEE-eeeeEEEeccccccCcccc
Confidence            47899999999999999999986321    111122222111  11122 2222  4789999998764

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.60  E-value=5.9e-05  Score=61.92  Aligned_cols=86  Identities=14%  Similarity=0.150  Sum_probs=56.1

Q ss_pred             HhhccCEEEEEEcCCCCCCCcCH--HHHHHHh---CCCCEEEEEEcccCCCccc--------------hHHHHHHHHhh-
Q psy15351         11 HLKNVDIVIEVHDSRMPFTGRNH--LLQQSVQ---NIRPMVLVLNKRDLINSKH--------------ESLIEEKVRKE-   70 (352)
Q Consensus        11 ~i~~aD~vl~VvDar~p~~~~~~--~l~~~l~---~~k~~ilVlNK~Dl~~~~~--------------~~~~~~~~~~~-   70 (352)
                      .+..+|++++|.|..++.+..+-  .+...+.   .+.|+++|.||+||.+...              .++..++.++. 
T Consensus        71 ~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~~~~~~i~lvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  150 (191)
T d2ngra_          71 SYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLK  150 (191)
T ss_dssp             GCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHTT
T ss_pred             cccccceeecccccchHHHHHHHHHHHHHHHhhcCCCCceEEEeccccccccchhhhhhhhcccccccHHHHHHHHHHcC
Confidence            46789999999999876432211  1222222   4789999999999864321              12222233332 


Q ss_pred             cCCCCcEEEeecCCCCCCCHHHHHHHHHHHh
Q psy15351         71 QSHISEVIFTNCRNPNCKGVQKILPTLQHIS  101 (352)
Q Consensus        71 ~~~~~~v~~iSa~~~~~~gi~~L~~~i~~~~  101 (352)
                      +..   ++.+||+++  .|++++++.+...+
T Consensus       151 ~~~---~~e~SAk~~--~~V~e~f~~l~~~~  176 (191)
T d2ngra_         151 AVK---YVECSALTQ--KGLKNVFDEAILAA  176 (191)
T ss_dssp             CSC---EEECCTTTC--TTHHHHHHHHHHHH
T ss_pred             CCe---EEEEeCCCC--cCHHHHHHHHHHHH
Confidence            233   788999999  99999988776543

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=97.54  E-value=7.2e-05  Score=63.33  Aligned_cols=86  Identities=12%  Similarity=0.123  Sum_probs=54.5

Q ss_pred             ccCEEEEEEcCCCCCCCcCHH---HHHH---HhCCCCEEEEEEcccCCCccchHHHHHHHH-------------------
Q psy15351         14 NVDIVIEVHDSRMPFTGRNHL---LQQS---VQNIRPMVLVLNKRDLINSKHESLIEEKVR-------------------   68 (352)
Q Consensus        14 ~aD~vl~VvDar~p~~~~~~~---l~~~---l~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~-------------------   68 (352)
                      ..+.+++|+|+..........   +...   .+...|.++|+||+|+++.+..+.+..+..                   
T Consensus       123 ~~~~~v~vvd~~~~~~~~~~~~~~l~~~~~~~~~~~~~ivvinK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (244)
T d1yrba1         123 PYPLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLLSEEEKERHRKYFEDIDYLTARLKLDPSMQGLM  202 (244)
T ss_dssp             SSCEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHTSCEEEEECCGGGCCHHHHHHHHHHHHCHHHHHHHHHHCCSHHHHH
T ss_pred             cCceEEEEeccccccCchhHhhHHHHHHHHHHHhCCCceeeeeccccccHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence            456899999987544332211   1111   013678999999999998765433322110                   


Q ss_pred             --------hhcCCCCcEEEeecCCCCCCCHHHHHHHHHHHh
Q psy15351         69 --------KEQSHISEVIFTNCRNPNCKGVQKILPTLQHIS  101 (352)
Q Consensus        69 --------~~~~~~~~v~~iSa~~~~~~gi~~L~~~i~~~~  101 (352)
                              +......+++++||+++  +|+++|+..|.+.+
T Consensus       203 ~~~~~~~~~~~~~~~~~v~vSa~~g--eGi~~L~~~l~e~~  241 (244)
T d1yrba1         203 AYKMCSMMTEVLPPVRVLYLSAKTR--EGFEDLETLAYEHY  241 (244)
T ss_dssp             HHHHHHHHHHHSCCCCCEECCTTTC--TTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhCCCCcEEEEECCCC--CCHHHHHHHHHHHh
Confidence                    00011125899999999  99999999988753

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=97.53  E-value=0.00023  Score=61.69  Aligned_cols=53  Identities=13%  Similarity=0.027  Sum_probs=44.4

Q ss_pred             hHHHHHHHHhhccCEEEEEEcCCCCCCCcCHHHHHHHh-CCCCEEEEEEcccCC
Q psy15351          3 RGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQ-NIRPMVLVLNKRDLI   55 (352)
Q Consensus         3 ~~~~~~~~~i~~aD~vl~VvDar~p~~~~~~~l~~~l~-~~k~~ilVlNK~Dl~   55 (352)
                      .....+...+.-+|.+|+|+|+..+.......+.+++. .+.|.++++||+|..
T Consensus        79 dF~~e~~~al~~~D~avlvvda~~Gv~~~t~~~~~~~~~~~~p~~i~iNk~D~~  132 (267)
T d2dy1a2          79 DFVGEIRGALEAADAALVAVSAEAGVQVGTERAWTVAERLGLPRMVVVTKLDKG  132 (267)
T ss_dssp             GGHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEECGGGC
T ss_pred             hhhhhhhhhhcccCceEEEeeccCCccchhHHHHHhhhhccccccccccccccc
Confidence            45678888999999999999999988776666666555 789999999999963

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=97.47  E-value=0.00023  Score=61.91  Aligned_cols=53  Identities=19%  Similarity=0.228  Sum_probs=42.9

Q ss_pred             HHHHHHHhhccCEEEEEEcCCCCCCCcCHHHHHHHh-CCCCEEEEEEcccCCCc
Q psy15351          5 LKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQ-NIRPMVLVLNKRDLINS   57 (352)
Q Consensus         5 ~~~~~~~i~~aD~vl~VvDar~p~~~~~~~l~~~l~-~~k~~ilVlNK~Dl~~~   57 (352)
                      ..++...+..+|.+|+|+||.++....-..+.+..+ .+.|+++++||+|....
T Consensus        85 ~~e~~~~l~~~D~avlVvda~~Gv~~~T~~~w~~a~~~~lP~i~fINKmDr~~a  138 (276)
T d2bv3a2          85 TIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRIAFANKMDKTGA  138 (276)
T ss_dssp             STTHHHHHHHCCEEEEEEETTTSSCHHHHHHHHHHHTTTCCEEEEEECTTSTTC
T ss_pred             HHHHHHHHHhhhheEEeccccCCcchhHHHHHHHHHHcCCCEEEEEeccccccc
Confidence            345778889999999999999988776666666555 78999999999997543

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=97.46  E-value=5.3e-05  Score=64.08  Aligned_cols=24  Identities=25%  Similarity=0.260  Sum_probs=21.8

Q ss_pred             CcceEEEEeCCCCCChHHHHHHHh
Q psy15351        166 VYNTTVMVVGVPNVGKSSIINALR  189 (352)
Q Consensus       166 ~~~~~v~i~G~pnvGKStliN~l~  189 (352)
                      ++-++++++|..++|||||+++|+
T Consensus         7 ~~~~~i~viGHVd~GKSTL~~~Ll   30 (222)
T d1zunb3           7 KEMLRFLTCGNVDDGKSTLIGRLL   30 (222)
T ss_dssp             CEEEEEEEECCTTSSHHHHHHHHH
T ss_pred             CCcceEEEEcCCCCCHHHHHHHHH
Confidence            456889999999999999999996

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.46  E-value=0.0001  Score=57.88  Aligned_cols=88  Identities=17%  Similarity=0.131  Sum_probs=57.1

Q ss_pred             HHhhccCEEEEEEcCCCCCCCcCHH--HHHHHh----CCCCEEEEEEcccCCCccchHHHHHHHHhhc---------CCC
Q psy15351         10 KHLKNVDIVIEVHDSRMPFTGRNHL--LQQSVQ----NIRPMVLVLNKRDLINSKHESLIEEKVRKEQ---------SHI   74 (352)
Q Consensus        10 ~~i~~aD~vl~VvDar~p~~~~~~~--l~~~l~----~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~---------~~~   74 (352)
                      .....++.+++++|..++.......  +.....    ...|++++.||.|+.......++.+.+....         ...
T Consensus        63 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~k~d~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  142 (166)
T d2qtvb1          63 DYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAELRSALGLLNTTGSQRIEGQRP  142 (166)
T ss_dssp             GGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCTTTTTCCEEEEEECTTSSSCCCHHHHHHHHTCSSCCC---CCSSCC
T ss_pred             hhhhheeeeeeeccccchhhhhhhhHHHHhhhhhhccCCceEEEEeccccccccCCHHHHHHHhhhhhhhHHHhhcccCC
Confidence            4567889999999987653322111  111111    4678999999999976544444444432110         111


Q ss_pred             CcEEEeecCCCCCCCHHHHHHHHHH
Q psy15351         75 SEVIFTNCRNPNCKGVQKILPTLQH   99 (352)
Q Consensus        75 ~~v~~iSa~~~~~~gi~~L~~~i~~   99 (352)
                      .+++.+||++|  +|+++++++|.+
T Consensus       143 ~~~~~~SA~tg--~Gv~e~~~~l~~  165 (166)
T d2qtvb1         143 VEVFMCSVVMR--NGYLEAFQWLSQ  165 (166)
T ss_dssp             EEEEEEBTTTT--BSHHHHHHHHTT
T ss_pred             CEEEEeeCCCC--CCHHHHHHHHhC
Confidence            14788999999  999999999865

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.44  E-value=6.8e-05  Score=60.93  Aligned_cols=87  Identities=17%  Similarity=0.092  Sum_probs=56.6

Q ss_pred             HHhhccCEEEEEEcCCCCCCCcC--HHHHHHHh---CCCCEEEEEEcccCCCccc--------------hHHHHHHHHhh
Q psy15351         10 KHLKNVDIVIEVHDSRMPFTGRN--HLLQQSVQ---NIRPMVLVLNKRDLINSKH--------------ESLIEEKVRKE   70 (352)
Q Consensus        10 ~~i~~aD~vl~VvDar~p~~~~~--~~l~~~l~---~~k~~ilVlNK~Dl~~~~~--------------~~~~~~~~~~~   70 (352)
                      ..+..+|++++|.|..++.+...  ..+...+.   .+.|+++|.||+|+.....              .+++.++.++.
T Consensus        69 ~~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~V~~~e~~~~a~~~  148 (179)
T d1m7ba_          69 LSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQI  148 (179)
T ss_dssp             GGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHH
T ss_pred             chhhhhhhhheeeecccCCCHHHHHHHHHHHHhccCCcceEEEEEecccccccchhhHHHhhhhcCcchHHHHHHHHHHh
Confidence            35788999999999987643221  11222222   5789999999999864211              23344444444


Q ss_pred             cCCCCcEEEeecCCCCCC-CHHHHHHHHHHH
Q psy15351         71 QSHISEVIFTNCRNPNCK-GVQKILPTLQHI  100 (352)
Q Consensus        71 ~~~~~~v~~iSa~~~~~~-gi~~L~~~i~~~  100 (352)
                      +..  .++.+||+++  . |++++++.+...
T Consensus       149 ~~~--~y~E~SAk~~--~n~i~~~F~~~~~~  175 (179)
T d1m7ba_         149 GAA--TYIECSALQS--ENSVRDIFHVATLA  175 (179)
T ss_dssp             TCS--EEEECBTTTB--HHHHHHHHHHHHHH
T ss_pred             CCC--eEEEEeCCCC--CcCHHHHHHHHHHH
Confidence            432  4677999998  8 599998876543

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=97.42  E-value=9.5e-05  Score=64.17  Aligned_cols=65  Identities=20%  Similarity=0.212  Sum_probs=40.1

Q ss_pred             EEEEeCCCCCChHHHHHHHhCCC--CCCCCc----eecCC------CCCceeEeeeeEEecCCCcEEEEeCCCCCCC
Q psy15351        170 TVMVVGVPNVGKSSIINALRSSH--MKKGKA----VPVGP------KAGVTRSVMSQVKISEKPLIYILDTPGISLP  234 (352)
Q Consensus       170 ~v~i~G~pnvGKStliN~l~~~~--~~~~~~----~~~~~------~pg~T~~~~~~~~~~~~~~~~l~DtPGi~~~  234 (352)
                      +|+++|..++|||||+.+|....  ..+...    ..+.+      ..|.|...........+..+.++||||..+.
T Consensus         4 Nv~iiGh~~~GKTtL~e~ll~~~g~~~~~g~v~~g~~~~D~~~~E~~r~~ti~~~~~~~~~~~~~~n~iDtPGh~dF   80 (267)
T d2dy1a2           4 TVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGDF   80 (267)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGGG
T ss_pred             EEEEEcCCCCcHHHHHHHHHHHcCCchhhccchhccccccchHHHHHhCCeEEeecccccccccceeEEccCchhhh
Confidence            58999999999999999996321  100000    01111      2344444433334455668999999998764

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.41  E-value=7.5e-05  Score=61.30  Aligned_cols=55  Identities=16%  Similarity=0.314  Sum_probs=34.3

Q ss_pred             ceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCCcEEEEeCCCCCC
Q psy15351        168 NTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISL  233 (352)
Q Consensus       168 ~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~~  233 (352)
                      .++|.++|.+|||||||++.+..       .....++-|....   .+. .....+.++||+|...
T Consensus         2 ~iKivllG~~~vGKTsll~r~~f-------~~~~~pTiG~~~~---~~~-~~~~~~~~~D~~gq~~   56 (200)
T d1zcba2           2 LVKILLLGAGESGKSTFLKQMRI-------IHGQDPTKGIHEY---DFE-IKNVPFKMVDVGGQRS   56 (200)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHH-------HHSCCCCSSEEEE---EEE-ETTEEEEEEEECC---
T ss_pred             eEEEEEECCCCCCHHHHHHHHhc-------CCCCCCeeeeEEE---EEe-eeeeeeeeecccceee
Confidence            47899999999999999999942       1112233343221   122 2334688999999754

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.39  E-value=0.00012  Score=59.49  Aligned_cols=22  Identities=23%  Similarity=0.557  Sum_probs=20.7

Q ss_pred             eEEEEeCCCCCChHHHHHHHhC
Q psy15351        169 TTVMVVGVPNVGKSSIINALRS  190 (352)
Q Consensus       169 ~~v~i~G~pnvGKStliN~l~~  190 (352)
                      .+|+++|.+|||||||++++..
T Consensus         3 ~KivliG~~~vGKTsli~r~~~   24 (179)
T d1m7ba_           3 CKIVVVGDSQCGKTALLHVFAK   24 (179)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHh
Confidence            6899999999999999999986

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.38  E-value=0.0003  Score=56.41  Aligned_cols=90  Identities=13%  Similarity=0.057  Sum_probs=58.4

Q ss_pred             HHhhccCEEEEEEcCCCCCCCcCHH--HHHHHh----CCCCEEEEEEcccCCCccchHHHHHHHHhhcC-----------
Q psy15351         10 KHLKNVDIVIEVHDSRMPFTGRNHL--LQQSVQ----NIRPMVLVLNKRDLINSKHESLIEEKVRKEQS-----------   72 (352)
Q Consensus        10 ~~i~~aD~vl~VvDar~p~~~~~~~--l~~~l~----~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~-----------   72 (352)
                      ......+.+++++|..++.......  +.....    .+.|.+++.||.|+..........+.+.....           
T Consensus        76 ~~~~~~~~~~~~~d~~d~~~~~~~~~~~~~~~~~~~~~~~~~li~~~K~D~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  155 (186)
T d1f6ba_          76 NYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKE  155 (186)
T ss_dssp             GGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTCCCHHHHHHHHTCTTTCCCSSCCCTTT
T ss_pred             hhhcccceeeeeeeccCccchHHHHHHHHHhhcccccCCCceEEEEeccCccccCCHHHHHHHHhhcccchhhhhhhHHH
Confidence            4567889999999987653322211  111121    47899999999998765444444444321100           


Q ss_pred             -C--CCcEEEeecCCCCCCCHHHHHHHHHHHh
Q psy15351         73 -H--ISEVIFTNCRNPNCKGVQKILPTLQHIS  101 (352)
Q Consensus        73 -~--~~~v~~iSa~~~~~~gi~~L~~~i~~~~  101 (352)
                       .  .-+++.+||++|  +|+++++++|.+.+
T Consensus       156 ~~~~~~~~~~~SA~tg--~Gi~e~~~~l~~~i  185 (186)
T d1f6ba_         156 LNARPLEVFMCSVLKR--QGYGEGFRWMAQYI  185 (186)
T ss_dssp             CCSCCEEEEECBTTTT--BSHHHHHHHHHTTC
T ss_pred             hhcCCCEEEEEeCCCC--CCHHHHHHHHHHhh
Confidence             0  013778999999  99999999987643

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.38  E-value=0.00016  Score=61.74  Aligned_cols=89  Identities=10%  Similarity=-0.005  Sum_probs=55.5

Q ss_pred             hhHHHHHHHHhhccCEEEEEEcCCCCCC-------CcCHHHHHHHh-CCC-CEEEEEEcccCCCccc--h----HHHHHH
Q psy15351          2 GRGLKDIEKHLKNVDIVIEVHDSRMPFT-------GRNHLLQQSVQ-NIR-PMVLVLNKRDLINSKH--E----SLIEEK   66 (352)
Q Consensus         2 ~~~~~~~~~~i~~aD~vl~VvDar~p~~-------~~~~~l~~~l~-~~k-~~ilVlNK~Dl~~~~~--~----~~~~~~   66 (352)
                      ....+.+...+..+|.+|+|+||..+..       ..-.+...+++ .+. ++|+++||+|+++.+.  .    .+..++
T Consensus        95 ~df~~~~~~g~~~~D~ailvvda~~G~~e~g~~~~~QT~eh~~~~~~~gv~~iiv~iNKmD~~~~d~~~~~~~~~el~~~  174 (239)
T d1f60a3          95 RDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTLGVRQLIVAVNKMDSVKWDESRFQEIVKETSNF  174 (239)
T ss_dssp             TTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHTTCCEEEEEEECGGGGTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCEEEEEEECCCCccccccCchHhHHHHHHHHHHcCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHH
Confidence            3467788899999999999999986421       11112222222 344 5778899999987543  1    223334


Q ss_pred             HHhhcCCC--CcEEEeecCCCCCCCHHH
Q psy15351         67 VRKEQSHI--SEVIFTNCRNPNCKGVQK   92 (352)
Q Consensus        67 ~~~~~~~~--~~v~~iSa~~~~~~gi~~   92 (352)
                      +...+...  .+++++|+..+  .|+-+
T Consensus       175 l~~~~~~~~~i~~ipiSa~~G--~ni~~  200 (239)
T d1f60a3         175 IKKVGYNPKTVPFVPISGWNG--DNMIE  200 (239)
T ss_dssp             HHHHTCCGGGCCEEECCTTTC--BTTTB
T ss_pred             HHhcCCCCCcEEEEEEEccCC--Cccee
Confidence            44444332  24689999998  77544

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=97.27  E-value=0.00017  Score=61.84  Aligned_cols=91  Identities=13%  Similarity=0.065  Sum_probs=50.1

Q ss_pred             hHHHHHHHHhhccCEEEEEEcCCCCCCC-------cCHHHHHHHh-C-CCCEEEEEEcccCCCccc----hHHHHH----
Q psy15351          3 RGLKDIEKHLKNVDIVIEVHDSRMPFTG-------RNHLLQQSVQ-N-IRPMVLVLNKRDLINSKH----ESLIEE----   65 (352)
Q Consensus         3 ~~~~~~~~~i~~aD~vl~VvDar~p~~~-------~~~~l~~~l~-~-~k~~ilVlNK~Dl~~~~~----~~~~~~----   65 (352)
                      .....+...+..+|.+++|+|+..+...       .-.+...++. . .+++++++||+|+.+.+.    ..++.+    
T Consensus       114 df~~~~~~g~~~aD~ailVVda~~G~~~~~~~~~~QT~e~l~l~~~~~i~~iiv~iNKmD~~~~~~~e~~~~ei~~~l~~  193 (245)
T d1r5ba3         114 GYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQWSEERYKECVDKLSM  193 (245)
T ss_dssp             ---------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTTSTTCSSCHHHHHHHHHHHHH
T ss_pred             cchhhhhhhhhhhcceeeEEEcCCCccCCccccccchHHHHHHHHHcCCCeEEEEEEcCCCCccchhHHHHHHHHHHHHH
Confidence            3456677888999999999999875311       1122223232 3 345789999999975431    222322    


Q ss_pred             HHHhh-cCCC---CcEEEeecCCCCCCCHHHHHH
Q psy15351         66 KVRKE-QSHI---SEVIFTNCRNPNCKGVQKILP   95 (352)
Q Consensus        66 ~~~~~-~~~~---~~v~~iSa~~~~~~gi~~L~~   95 (352)
                      ++.+. +...   .+++++||++|  +|+.++++
T Consensus       194 ~l~~i~~~~~~~~v~~VPiSA~~G--~nI~~~~~  225 (245)
T d1r5ba3         194 FLRRVAGYNSKTDVKYMPVSAYTG--QNVKDRVD  225 (245)
T ss_dssp             HHHHHHCCCHHHHEEEEECBTTTT--BTTSSCCC
T ss_pred             HHHHHhCcCcccCCEEEEeeccCC--CCcccchh
Confidence            23222 2211   14789999999  99877543

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.26  E-value=0.00019  Score=62.58  Aligned_cols=64  Identities=23%  Similarity=0.337  Sum_probs=41.3

Q ss_pred             ceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCC-CCCceeEeeeeEEe---cCCCcEEEEeCCCCCCCC
Q psy15351        168 NTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGP-KAGVTRSVMSQVKI---SEKPLIYILDTPGISLPR  235 (352)
Q Consensus       168 ~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~-~pg~T~~~~~~~~~---~~~~~~~l~DtPGi~~~~  235 (352)
                      -.-|+++|...+|||+|+|.|.+..    ....+++ .-.+|+...-+...   ..+..+.++||.|+....
T Consensus        32 v~vvsi~G~~~sGKS~llN~l~~~~----~~f~~~~~~~~~T~Giw~~~~~~~~~~~~~~~~lDteG~~~~~   99 (277)
T d1f5na2          32 MVVVAIVGLYRTGKSYLMNKLAGKK----KGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGDVE   99 (277)
T ss_dssp             EEEEEEEEBTTSSHHHHHHHHTTCS----SCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCCGG
T ss_pred             EEEEEEECCCCCCHHHHHHHHcCCC----CCCccCCCCCCCCCceEEEEeeccCCCCceEEEEecccccccc
Confidence            3578999999999999999999742    2222222 22356554211111   123358999999999764

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.19  E-value=0.00026  Score=65.13  Aligned_cols=92  Identities=11%  Similarity=0.062  Sum_probs=63.6

Q ss_pred             HhhccCEEEEEEcCCCCCCCcCHHHHHHHh-CCCCEEEEEEcccCCCc------------c-ch----HHHHHHHHhhcC
Q psy15351         11 HLKNVDIVIEVHDSRMPFTGRNHLLQQSVQ-NIRPMVLVLNKRDLINS------------K-HE----SLIEEKVRKEQS   72 (352)
Q Consensus        11 ~i~~aD~vl~VvDar~p~~~~~~~l~~~l~-~~k~~ilVlNK~Dl~~~------------~-~~----~~~~~~~~~~~~   72 (352)
                      .+..+|++|++.|.+  +...+..+.+.++ .++|+++|+||+|...+            + ..    +.+.+.+++.+.
T Consensus       132 ~~~~~d~~l~~~~~~--~~~~d~~l~~~l~~~~k~~~~V~nK~D~~~~~~~~~~~~~~~~e~~l~~ir~~~~~~l~~~~~  209 (400)
T d1tq4a_         132 KFYEYDFFIIISATR--FKKNDIDIAKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGI  209 (400)
T ss_dssp             TGGGCSEEEEEESSC--CCHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTC
T ss_pred             hhhcceEEEEecCCC--CCHHHHHHHHHHHHcCCCEEEEEeCcccccchhhhcccccccHHHHHHHHHHHHHHHHHHcCC
Confidence            567899999999876  4455556666665 78999999999996421            1 01    222334444455


Q ss_pred             CCCcEEEeecCCCCCCCHHHHHHHHHHHhhhc
Q psy15351         73 HISEVIFTNCRNPNCKGVQKILPTLQHISDNM  104 (352)
Q Consensus        73 ~~~~v~~iSa~~~~~~gi~~L~~~i~~~~~~~  104 (352)
                      ...+++.+|+......|+.+|.+++.+.+++.
T Consensus       210 ~~~~vflvS~~~~~~~d~~~L~~~l~~~L~~~  241 (400)
T d1tq4a_         210 AEPPIFLLSNKNVCHYDFPVLMDKLISDLPIY  241 (400)
T ss_dssp             SSCCEEECCTTCTTSTTHHHHHHHHHHHSCGG
T ss_pred             CCCCEEEecCCcccccCHHHHHHHHHHHhHHH
Confidence            54468899987654479999999998888753

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.12  E-value=0.00068  Score=54.59  Aligned_cols=85  Identities=12%  Similarity=0.018  Sum_probs=53.3

Q ss_pred             HhhccCEEEEEEcCCCCCCCcC-HHHHHHH---h----CCCCEEEEEEcccCCCccc----hHHHHHHHHhh-cCCCCcE
Q psy15351         11 HLKNVDIVIEVHDSRMPFTGRN-HLLQQSV---Q----NIRPMVLVLNKRDLINSKH----ESLIEEKVRKE-QSHISEV   77 (352)
Q Consensus        11 ~i~~aD~vl~VvDar~p~~~~~-~~l~~~l---~----~~k~~ilVlNK~Dl~~~~~----~~~~~~~~~~~-~~~~~~v   77 (352)
                      ....+|++|+|.|..++-+..+ ..+...+   +    ...|+++|.||.|+.....    ..+..++.++. +.   .+
T Consensus        67 ~~~~ad~~ilVfd~~~~~Sf~~~~~~~~~i~~~~~~~~~~~pi~lV~~k~d~d~~~~~~v~~~~~~~~~~~~~~~---~~  143 (175)
T d2bmja1          67 FSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALCADMKRC---SY  143 (175)
T ss_dssp             HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHCC--CCCCEEEEEEECTTCCSSSCCCSCHHHHHHHHHTSTTE---EE
T ss_pred             cccccceeEEEeecccchhhhhhHHHHHHHHHHhhcccCCccEEEEeeecCcchhhhcchhHHHHHHHHHHhCCC---eE
Confidence            4678999999999987643222 1122222   1    2347899999999754322    12333333332 22   37


Q ss_pred             EEeecCCCCCCCHHHHHHHHHHH
Q psy15351         78 IFTNCRNPNCKGVQKILPTLQHI  100 (352)
Q Consensus        78 ~~iSa~~~~~~gi~~L~~~i~~~  100 (352)
                      +.+||+++  .|+++++..+.+.
T Consensus       144 ~e~SAk~~--~~v~~~F~~l~~~  164 (175)
T d2bmja1         144 YETCATYG--LNVDRVFQEVAQK  164 (175)
T ss_dssp             EEEBTTTT--BTHHHHHHHHHHH
T ss_pred             EEeCCCCC--cCHHHHHHHHHHH
Confidence            78999999  9999998766543

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=97.08  E-value=0.001  Score=55.89  Aligned_cols=87  Identities=10%  Similarity=0.051  Sum_probs=53.2

Q ss_pred             hHHHHHHHHhhccCEEEEEEcCCCCCCC-----cCH--HHHHHHh--CCCCEEEEEEcccCCCccc----hHH----HHH
Q psy15351          3 RGLKDIEKHLKNVDIVIEVHDSRMPFTG-----RNH--LLQQSVQ--NIRPMVLVLNKRDLINSKH----ESL----IEE   65 (352)
Q Consensus         3 ~~~~~~~~~i~~aD~vl~VvDar~p~~~-----~~~--~l~~~l~--~~k~~ilVlNK~Dl~~~~~----~~~----~~~   65 (352)
                      .....+...+.-+|.+|+|+|+..+...     ...  +...+.+  ..+++|+++||+|+..++.    .+.    ..+
T Consensus        93 df~~~~~~g~~~~D~allVVda~~G~~~~t~~~~~qt~e~l~~~~~~~~~~iIv~iNK~D~~~~~~~~~~~~~v~~~i~~  172 (224)
T d1jnya3          93 DFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPPYDEKRYKEIVDQVSK  172 (224)
T ss_dssp             THHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSSSTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhceEEEEEecccCcccccccccchhHHHHHHHHHhCCCceEEEEEcccCCCccccHHHHHHHHHHHHh
Confidence            4567788899999999999999876321     111  1111112  4557888999999986432    111    122


Q ss_pred             HHHhhcCC--CCcEEEeecCCCCCCCHH
Q psy15351         66 KVRKEQSH--ISEVIFTNCRNPNCKGVQ   91 (352)
Q Consensus        66 ~~~~~~~~--~~~v~~iSa~~~~~~gi~   91 (352)
                      ++...+..  ..+++++||.++  .|+.
T Consensus       173 ~~~~~~~~~~~i~~IPISA~~G--~NV~  198 (224)
T d1jnya3         173 FMRSYGFNTNKVRFVPVVAPSG--DNIT  198 (224)
T ss_dssp             HHHHTTCCCTTCEEEECBTTTT--BTTT
T ss_pred             HHHhcCCCcccCeEEEEEccCC--CCcc
Confidence            23322322  124789999998  7754

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.08  E-value=0.00026  Score=60.30  Aligned_cols=68  Identities=21%  Similarity=0.232  Sum_probs=44.4

Q ss_pred             CcceEEEEeCCCCCChHHHHHHHhCC--CCCC--------------CC---------ceecCCCCCceeEeeeeEEecCC
Q psy15351        166 VYNTTVMVVGVPNVGKSSIINALRSS--HMKK--------------GK---------AVPVGPKAGVTRSVMSQVKISEK  220 (352)
Q Consensus       166 ~~~~~v~i~G~pnvGKStliN~l~~~--~~~~--------------~~---------~~~~~~~pg~T~~~~~~~~~~~~  220 (352)
                      ++.++|+++|..+.|||||+.+|+-.  .+..              +.         ........|.|.+.........+
T Consensus         4 k~~iNi~iiGHvD~GKsTl~~~ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~   83 (239)
T d1f60a3           4 KSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK   83 (239)
T ss_dssp             CEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSS
T ss_pred             CCccEEEEEeCCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHHhcCCccceeeecccchhhhcceeccccceeEeccCC
Confidence            34589999999999999999988521  0000              00         00011245777765544455566


Q ss_pred             CcEEEEeCCCCCC
Q psy15351        221 PLIYILDTPGISL  233 (352)
Q Consensus       221 ~~~~l~DtPGi~~  233 (352)
                      .++.++||||-.+
T Consensus        84 ~~i~iiDtPGH~d   96 (239)
T d1f60a3          84 YQVTVIDAPGHRD   96 (239)
T ss_dssp             EEEEEEECCCCTT
T ss_pred             EEEEEEECCCcHH
Confidence            7899999999875

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=97.06  E-value=0.00014  Score=65.11  Aligned_cols=27  Identities=26%  Similarity=0.322  Sum_probs=24.0

Q ss_pred             ccCcceEEEEeCCCCCChHHHHHHHhC
Q psy15351        164 TEVYNTTVMVVGVPNVGKSSIINALRS  190 (352)
Q Consensus       164 ~~~~~~~v~i~G~pnvGKStliN~l~~  190 (352)
                      ..++.++|+|.|.||+|||||+|+|..
T Consensus        50 ~~~~~~~IgitG~pGaGKSTLi~~l~~   76 (327)
T d2p67a1          50 YCGNTLRLGVTGTPGAGKSTFLEAFGM   76 (327)
T ss_dssp             GCSCSEEEEEEECTTSCHHHHHHHHHH
T ss_pred             ccCCceEEEeeCCCCCCHHHHHHHHHH
Confidence            346789999999999999999999974

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=97.03  E-value=0.00015  Score=62.21  Aligned_cols=69  Identities=19%  Similarity=0.167  Sum_probs=34.7

Q ss_pred             CcceEEEEeCCCCCChHHHHHHHhCCC--CCC-----------------------CCceecCCCCCceeEeeeeEEecCC
Q psy15351        166 VYNTTVMVVGVPNVGKSSIINALRSSH--MKK-----------------------GKAVPVGPKAGVTRSVMSQVKISEK  220 (352)
Q Consensus       166 ~~~~~v~i~G~pnvGKStliN~l~~~~--~~~-----------------------~~~~~~~~~pg~T~~~~~~~~~~~~  220 (352)
                      ++.++|+++|..+.|||||+.+|+...  +..                       ..........|.|.+.........+
T Consensus        22 k~~iNi~iiGHVD~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~~~  101 (245)
T d1r5ba3          22 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEH  101 (245)
T ss_dssp             CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSS
T ss_pred             CCceEEEEEeeCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCCccchhhhhhhccccccccCcccccccccccccc
Confidence            356889999999999999999994210  000                       0011222344555554333334455


Q ss_pred             CcEEEEeCCCCCCC
Q psy15351        221 PLIYILDTPGISLP  234 (352)
Q Consensus       221 ~~~~l~DtPGi~~~  234 (352)
                      ..+.++||||-...
T Consensus       102 ~~i~~iDtPGH~df  115 (245)
T d1r5ba3         102 RRFSLLDAPGHKGY  115 (245)
T ss_dssp             EEEEECCCCC----
T ss_pred             ceeeeecccccccc
Confidence            67999999997653

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.02  E-value=0.00022  Score=57.83  Aligned_cols=53  Identities=15%  Similarity=0.337  Sum_probs=34.6

Q ss_pred             ceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCCcEEEEeCCCCCC
Q psy15351        168 NTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISL  233 (352)
Q Consensus       168 ~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~~  233 (352)
                      .++|+++|..|||||||++.+...     ..+    ..|+...   .+ ......+.++||.|-..
T Consensus         2 e~KivllG~~~vGKTsl~~r~~~~-----~~~----t~~~~~~---~~-~~~~~~~~i~D~~Gq~~   54 (195)
T d1svsa1           2 EVKLLLLGAGESGKSTIVKQMKII-----HEA----GTGIVET---HF-TFKDLHFKMFDVGGQRS   54 (195)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHH-----HSC----CCSEEEE---EE-EETTEEEEEEEECCSGG
T ss_pred             ceEEEEECCCCCCHHHHHHHHhhC-----CCC----CccEEEE---EE-Eeeeeeeeeeccccccc
Confidence            478999999999999999999741     111    1122111   12 22334688999999543

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=96.98  E-value=0.00016  Score=61.11  Aligned_cols=67  Identities=21%  Similarity=0.267  Sum_probs=36.8

Q ss_pred             cceEEEEeCCCCCChHHHHHHHhCCC-CCCC------------------------CceecCCCCCceeEeeeeEEecCCC
Q psy15351        167 YNTTVMVVGVPNVGKSSIINALRSSH-MKKG------------------------KAVPVGPKAGVTRSVMSQVKISEKP  221 (352)
Q Consensus       167 ~~~~v~i~G~pnvGKStliN~l~~~~-~~~~------------------------~~~~~~~~pg~T~~~~~~~~~~~~~  221 (352)
                      +.++|+++|.-+.|||||+.+|+... .-..                        .........|.|...........+.
T Consensus         2 p~iNi~viGHVd~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~~~~   81 (224)
T d1jnya3           2 PHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKKY   81 (224)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSSC
T ss_pred             CccEEEEEecCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCcccccccccccCchhhhcCCccccceEEEEecCCc
Confidence            46899999999999999999885210 0000                        0001223456665544333344566


Q ss_pred             cEEEEeCCCCCC
Q psy15351        222 LIYILDTPGISL  233 (352)
Q Consensus       222 ~~~l~DtPGi~~  233 (352)
                      .+.++||||-.+
T Consensus        82 ~i~iiDtPGH~d   93 (224)
T d1jnya3          82 FFTIIDAPGHRD   93 (224)
T ss_dssp             EEEECCCSSSTT
T ss_pred             eeEEeeCCCcHH
Confidence            899999999865

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.91  E-value=0.00058  Score=55.46  Aligned_cols=56  Identities=20%  Similarity=0.292  Sum_probs=36.4

Q ss_pred             ceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCCcEEEEeCCCCCC
Q psy15351        168 NTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISL  233 (352)
Q Consensus       168 ~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~~  233 (352)
                      .++|+++|..|||||||++++...+.      ..-++-|....    ......-.+.++||+|...
T Consensus         2 e~Kiv~lG~~~vGKTsll~r~~~~~~------~~~pTiG~~~~----~~~~~~~~~~~~d~~g~~~   57 (200)
T d2bcjq2           2 ELKLLLLGTGESGKSTFIKQMRIIHG------SGVPTTGIIEY----PFDLQSVIFRMVDVGGQRS   57 (200)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHHTS------SCCCCCSCEEE----EEECSSCEEEEEECCCSTT
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCCC------CCCceeeEEEE----EEeccceeeeecccccccc
Confidence            47899999999999999999975221      11122232211    1112334688999999764

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=96.48  E-value=0.0047  Score=54.75  Aligned_cols=87  Identities=15%  Similarity=0.185  Sum_probs=53.0

Q ss_pred             HHhhccCEEEEEEcCCCC--CCCcCHHHHHHHhCCCCEEEEEEcccCCCccchHHHHHHHHhh--------cCCCCcEEE
Q psy15351         10 KHLKNVDIVIEVHDSRMP--FTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHESLIEEKVRKE--------QSHISEVIF   79 (352)
Q Consensus        10 ~~i~~aD~vl~VvDar~p--~~~~~~~l~~~l~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~--------~~~~~~v~~   79 (352)
                      .....+|.+++|++....  ......-+.+     .+-++|+||+|+..........+.+...        .....+|+.
T Consensus       163 ~i~~~aD~~l~v~~P~~Gd~iq~~k~gi~e-----~aDi~VvNKaD~~~~~~~~~~~~~~~~al~~~~~~~~~w~p~V~~  237 (327)
T d2p67a1         163 EVARMVDCFISLQIAGGGDDLQGIKKGLME-----VADLIVINKDDGDNHTNVAIARHMYESALHILRRKYDEWQPRVLT  237 (327)
T ss_dssp             HHHTTCSEEEEEECC------CCCCHHHHH-----HCSEEEECCCCTTCHHHHHHHHHHHHHHHHHSCCSBTTBCCEEEE
T ss_pred             hhhhccceEEEEecCCCchhhhhhchhhhc-----cccEEEEEeecccchHHHHHHHHHHHHHhhhcccCCCCCcceeEE
Confidence            456788999999864322  1111222222     2348999999987765433222222221        111126999


Q ss_pred             eecCCCCCCCHHHHHHHHHHHhhh
Q psy15351         80 TNCRNPNCKGVQKILPTLQHISDN  103 (352)
Q Consensus        80 iSa~~~~~~gi~~L~~~i~~~~~~  103 (352)
                      +||.++  +|+++|.+.|.++.+.
T Consensus       238 ~SA~~g--~Gi~eL~~~I~~~~~~  259 (327)
T d2p67a1         238 CSALEK--RGIDEIWHAIIDFKTA  259 (327)
T ss_dssp             CBGGGT--BSHHHHHHHHHHHHHH
T ss_pred             EEeeCC--CCHHHHHHHHHHHHHH
Confidence            999999  9999999999876553

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=96.47  E-value=0.00062  Score=54.37  Aligned_cols=22  Identities=23%  Similarity=0.673  Sum_probs=20.4

Q ss_pred             eEEEEeCCCCCChHHHHHHHhC
Q psy15351        169 TTVMVVGVPNVGKSSIINALRS  190 (352)
Q Consensus       169 ~~v~i~G~pnvGKStliN~l~~  190 (352)
                      ++|+++|.||+|||||++.+++
T Consensus         1 ~ki~I~G~~G~GKSTLl~~i~~   22 (178)
T d1ye8a1           1 MKIIITGEPGVGKTTLVKKIVE   22 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCcHHHHHHHHHHh
Confidence            4799999999999999999986

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=96.45  E-value=0.00065  Score=57.11  Aligned_cols=39  Identities=23%  Similarity=0.300  Sum_probs=26.6

Q ss_pred             EEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCce
Q psy15351        170 TVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVT  208 (352)
Q Consensus       170 ~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T  208 (352)
                      -|+++|.+|+|||||+++|.......+..+.+..-||++
T Consensus         2 vi~v~G~~GsGKTTLl~~ll~~~~~~~~~~ivn~d~~~~   40 (244)
T d1yrba1           2 IVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDTGVK   40 (244)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEECCSSCS
T ss_pred             EEEEEcCCCCcHHHHHHHHHHHHhhCCeEEEEecCcccc
Confidence            588999999999999999974321223444444455544

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=96.44  E-value=0.0015  Score=54.52  Aligned_cols=55  Identities=20%  Similarity=0.320  Sum_probs=36.5

Q ss_pred             ceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCCcEEEEeCCCCCCC
Q psy15351        168 NTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLP  234 (352)
Q Consensus       168 ~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~~~  234 (352)
                      ..+|+++|.+|||||||++.+..     .   ...++-|.+..   .+. ..+-.+.++|+.|-...
T Consensus         6 ~~KilllG~~~vGKTsll~~~~~-----~---~~~pTiG~~~~---~~~-~~~~~~~~~D~~Gq~~~   60 (221)
T d1azta2           6 THRLLLLGAGESGKSTIVKQMRI-----L---HVVLTSGIFET---KFQ-VDKVNFHMFDVGGQRDE   60 (221)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHHH-----H---HCCCCCSCEEE---EEE-ETTEEEEEEECCCSTTT
T ss_pred             cCEEEEECCCCCCHHHHHHHHhc-----C---CcCCCCCeEEE---EEE-ECcEEEEEEecCcccee
Confidence            47899999999999999999964     1   12233343322   122 23346889999996653

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=96.40  E-value=0.001  Score=52.74  Aligned_cols=25  Identities=20%  Similarity=0.517  Sum_probs=23.1

Q ss_pred             CcceEEEEeCCCCCChHHHHHHHhC
Q psy15351        166 VYNTTVMVVGVPNVGKSSIINALRS  190 (352)
Q Consensus       166 ~~~~~v~i~G~pnvGKStliN~l~~  190 (352)
                      +++++|.+.|.||+||||+.+.|..
T Consensus         3 pk~~~I~i~G~~GsGKTT~~~~La~   27 (174)
T d1y63a_           3 PKGINILITGTPGTGKTSMAEMIAA   27 (174)
T ss_dssp             CSSCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCCEEEEEeCCCCCHHHHHHHHHH
Confidence            6789999999999999999999974

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=96.36  E-value=0.00088  Score=59.53  Aligned_cols=26  Identities=46%  Similarity=0.575  Sum_probs=23.5

Q ss_pred             cCcceEEEEeCCCCCChHHHHHHHhC
Q psy15351        165 EVYNTTVMVVGVPNVGKSSIINALRS  190 (352)
Q Consensus       165 ~~~~~~v~i~G~pnvGKStliN~l~~  190 (352)
                      .+..++|+|.|.||+|||||+++|..
T Consensus        48 ~~~~~~igitG~pGaGKSTli~~l~~   73 (323)
T d2qm8a1          48 TGRAIRVGITGVPGVGKSTTIDALGS   73 (323)
T ss_dssp             CCCSEEEEEECCTTSCHHHHHHHHHH
T ss_pred             cCCceEEeeeCCCCCCHHHHHHHHHH
Confidence            45679999999999999999999985

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=96.26  E-value=0.009  Score=52.74  Aligned_cols=86  Identities=9%  Similarity=0.033  Sum_probs=51.2

Q ss_pred             HhhccCEEEEEEcCCCCCCC--cCHHHHHHHhCCCCEEEEEEcccCCCccchHH-HHHHHHhh--------cCCCCcEEE
Q psy15351         11 HLKNVDIVIEVHDSRMPFTG--RNHLLQQSVQNIRPMVLVLNKRDLINSKHESL-IEEKVRKE--------QSHISEVIF   79 (352)
Q Consensus        11 ~i~~aD~vl~VvDar~p~~~--~~~~l~~~l~~~k~~ilVlNK~Dl~~~~~~~~-~~~~~~~~--------~~~~~~v~~   79 (352)
                      ....+|..++|+....+..-  ...-+.     ...-++|+||+|+.+...... ....+...        .....+|+.
T Consensus       161 ~~~~~D~~v~v~~p~~GD~iQ~~k~gil-----E~aDi~vvNKaD~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~V~~  235 (323)
T d2qm8a1         161 VADLTDFFLVLMLPGAGDELQGIKKGIF-----ELADMIAVNKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVT  235 (323)
T ss_dssp             HHTTSSEEEEEECSCC------CCTTHH-----HHCSEEEEECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE
T ss_pred             hhcccceEEEEeeccchhhhhhhhhhHh-----hhhheeeEeccccccchHHHHHHHHHHHHHhhcccccccCCCCceEE
Confidence            34568888888866533110  011111     123489999999887654322 11112111        011236999


Q ss_pred             eecCCCCCCCHHHHHHHHHHHhhh
Q psy15351         80 TNCRNPNCKGVQKILPTLQHISDN  103 (352)
Q Consensus        80 iSa~~~~~~gi~~L~~~i~~~~~~  103 (352)
                      +||.++  +|+++|.++|.++...
T Consensus       236 ~Sa~~g--~Gi~el~~~I~~~~~~  257 (323)
T d2qm8a1         236 ISGLHG--KGLDSLWSRIEDHRSK  257 (323)
T ss_dssp             EBTTTT--BSHHHHHHHHHHHHHH
T ss_pred             EEecCC--CCHHHHHHHHHHHHHH
Confidence            999999  9999999999877653

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.23  E-value=0.0023  Score=52.45  Aligned_cols=60  Identities=22%  Similarity=0.294  Sum_probs=38.3

Q ss_pred             HHHHhhccCEEEEEEcCCCCCCCcC---HHHHHHHh------CCCCEEEEEEcccCCCccchHHHHHHH
Q psy15351          8 IEKHLKNVDIVIEVHDSRMPFTGRN---HLLQQSVQ------NIRPMVLVLNKRDLINSKHESLIEEKV   67 (352)
Q Consensus         8 ~~~~i~~aD~vl~VvDar~p~~~~~---~~l~~~l~------~~k~~ilVlNK~Dl~~~~~~~~~~~~~   67 (352)
                      ....+..+|.+++|+|+.+......   ..+.+++.      ...|+++|+||+|+.+....++..+.+
T Consensus        65 ~~~~~~~~~~~i~v~D~~d~~~~~~~~~~~l~~~l~~~~~~~~~~pilvv~NK~Dl~~a~~~~~i~~~l  133 (207)
T d2fh5b1          65 LDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQL  133 (207)
T ss_dssp             HHHHGGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHH
T ss_pred             hhhhhhhccccceEEEcccccccHHHHHHHHHHHHHhHHHhhcCCcEEEEEECcccCCCCCHHHHHHHH
Confidence            4456789999999999986432211   22223321      346888999999998755544444443

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.20  E-value=0.0013  Score=53.84  Aligned_cols=23  Identities=35%  Similarity=0.570  Sum_probs=20.5

Q ss_pred             ceEEEEeCCCCCChHHHHHHHhC
Q psy15351        168 NTTVMVVGVPNVGKSSIINALRS  190 (352)
Q Consensus       168 ~~~v~i~G~pnvGKStliN~l~~  190 (352)
                      |.-|+++|.||+||||+.++|..
T Consensus         2 p~li~l~GlpgsGKSTla~~L~~   24 (213)
T d1bifa1           2 PTLIVMVGLPARGKTYISKKLTR   24 (213)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            45689999999999999999984

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.17  E-value=0.0018  Score=57.88  Aligned_cols=23  Identities=26%  Similarity=0.393  Sum_probs=20.3

Q ss_pred             cce-EEEEeCCCCCChHHHHHHHh
Q psy15351        167 YNT-TVMVVGVPNVGKSSIINALR  189 (352)
Q Consensus       167 ~~~-~v~i~G~pnvGKStliN~l~  189 (352)
                      ..+ +|+++|..+.|||||+.+|.
T Consensus        15 ~~IRNI~iiGhvd~GKTTL~d~Ll   38 (341)
T d1n0ua2          15 TNVRNMSVIAHVDHGKSTLTDSLV   38 (341)
T ss_dssp             GGEEEEEEECCGGGTHHHHHHHHH
T ss_pred             ccCcEEEEEeCCCCcHHHHHHHHH
Confidence            345 49999999999999999996

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=96.16  E-value=0.0014  Score=51.61  Aligned_cols=21  Identities=14%  Similarity=0.311  Sum_probs=19.3

Q ss_pred             EEEEeCCCCCChHHHHHHHhC
Q psy15351        170 TVMVVGVPNVGKSSIINALRS  190 (352)
Q Consensus       170 ~v~i~G~pnvGKStliN~l~~  190 (352)
                      .++|+|.||+|||||++.|..
T Consensus         4 vi~itG~~GSGKTTL~~~L~~   24 (170)
T d1np6a_           4 LLAFAAWSGTGKTTLLKKLIP   24 (170)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            589999999999999999974

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=95.98  E-value=0.0014  Score=52.09  Aligned_cols=24  Identities=33%  Similarity=0.591  Sum_probs=21.5

Q ss_pred             cceEEEEeCCCCCChHHHHHHHhC
Q psy15351        167 YNTTVMVVGVPNVGKSSIINALRS  190 (352)
Q Consensus       167 ~~~~v~i~G~pnvGKStliN~l~~  190 (352)
                      ...+|+|+|.||+|||||.++|..
T Consensus         6 ~~K~I~i~G~~GsGKTTla~~La~   29 (192)
T d1lw7a2           6 FAKTVAILGGESSGKSVLVNKLAA   29 (192)
T ss_dssp             TCEEEEEECCTTSHHHHHHHHHHH
T ss_pred             cceEEEEECCCCCCHHHHHHHHHH
Confidence            346799999999999999999985

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=95.76  E-value=0.0022  Score=50.40  Aligned_cols=22  Identities=32%  Similarity=0.664  Sum_probs=20.0

Q ss_pred             eEEEEeCCCCCChHHHHHHHhC
Q psy15351        169 TTVMVVGVPNVGKSSIINALRS  190 (352)
Q Consensus       169 ~~v~i~G~pnvGKStliN~l~~  190 (352)
                      ++|.++|.||+||||+.+.|..
T Consensus         5 ~~I~i~G~pGsGKTTia~~La~   26 (173)
T d1rkba_           5 PNILLTGTPGVGKTTLGKELAS   26 (173)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            5689999999999999999974

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.72  E-value=0.0025  Score=50.31  Aligned_cols=20  Identities=25%  Similarity=0.423  Sum_probs=18.2

Q ss_pred             EEEeCCCCCChHHHHHHHhC
Q psy15351        171 VMVVGVPNVGKSSIINALRS  190 (352)
Q Consensus       171 v~i~G~pnvGKStliN~l~~  190 (352)
                      ++|+|++|+|||||++.|..
T Consensus         4 i~I~G~~gSGKTTli~~l~~   23 (165)
T d1xjca_           4 WQVVGYKHSGKTTLMEKWVA   23 (165)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHHH
Confidence            68999999999999998874

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=95.62  E-value=0.0035  Score=50.63  Aligned_cols=25  Identities=20%  Similarity=0.344  Sum_probs=22.2

Q ss_pred             CcceEEEEeCCCCCChHHHHHHHhC
Q psy15351        166 VYNTTVMVVGVPNVGKSSIINALRS  190 (352)
Q Consensus       166 ~~~~~v~i~G~pnvGKStliN~l~~  190 (352)
                      |++++|.++|.||+||||+...|..
T Consensus         1 p~~~riil~G~pGSGKsT~a~~La~   25 (190)
T d1ak2a1           1 PKGVRAVLLGPPGAGKGTQAPKLAK   25 (190)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCccEEEEECCCCCCHHHHHHHHHH
Confidence            3578999999999999999999974

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=95.53  E-value=0.0045  Score=48.74  Aligned_cols=25  Identities=32%  Similarity=0.444  Sum_probs=22.3

Q ss_pred             CcceEEEEeCCCCCChHHHHHHHhC
Q psy15351        166 VYNTTVMVVGVPNVGKSSIINALRS  190 (352)
Q Consensus       166 ~~~~~v~i~G~pnvGKStliN~l~~  190 (352)
                      ..++.|.++|.||+||||+-..|..
T Consensus         4 ~~g~~I~l~G~~GsGKTTia~~La~   28 (183)
T d1m8pa3           4 TQGFTIFLTGYMNSGKDAIARALQV   28 (183)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            4678999999999999999999973

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.46  E-value=0.0054  Score=54.61  Aligned_cols=51  Identities=18%  Similarity=0.125  Sum_probs=41.6

Q ss_pred             HHHHHHHhhccCEEEEEEcCCCCCCCcCHHHHHHHh-CCCCEEEEEEcccCC
Q psy15351          5 LKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQ-NIRPMVLVLNKRDLI   55 (352)
Q Consensus         5 ~~~~~~~i~~aD~vl~VvDar~p~~~~~~~l~~~l~-~~k~~ilVlNK~Dl~   55 (352)
                      ..++..++.-+|.+|+||||..+.......+.+... .+.|.++++||+|..
T Consensus       110 ~~ev~~al~~~D~allVVda~eGv~~qT~~~~~~a~~~~~p~i~viNKiDr~  161 (341)
T d1n0ua2         110 SSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALGERIKPVVVINKVDRA  161 (341)
T ss_dssp             CHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHHTTCEEEEEEECHHHH
T ss_pred             HHHHHHHHhhcCceEEEEecccCcchhHHHHHHHHHHcCCCeEEEEECcccc
Confidence            456778889999999999999988776666655443 789999999999964

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.36  E-value=0.0095  Score=47.95  Aligned_cols=89  Identities=15%  Similarity=0.169  Sum_probs=53.8

Q ss_pred             HhhccCEEEEEEcCCCCCCCc------C------HHHHHHHh----CCCCEEEEEEcccCCCc-----------------
Q psy15351         11 HLKNVDIVIEVHDSRMPFTGR------N------HLLQQSVQ----NIRPMVLVLNKRDLINS-----------------   57 (352)
Q Consensus        11 ~i~~aD~vl~VvDar~p~~~~------~------~~l~~~l~----~~k~~ilVlNK~Dl~~~-----------------   57 (352)
                      ..+.++.+++++|..+.....      +      ..+..++.    .+.|+++|+||+|+...                 
T Consensus        64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~f~~~~~~  143 (200)
T d1zcba2          64 CFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGD  143 (200)
T ss_dssp             SCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSC
T ss_pred             cccccceeEEEEEcCCcceeeeecccchhhhHHHHHHHHHhhChhhcCceEEEEeccchhhhhhccccHHHHhCccccCC
Confidence            557789999999987653321      1      11222232    47899999999997532                 


Q ss_pred             -cchHHHHHHHHh----hcC----CCCcEEEeecCCCCCCCHHHHHHHHHHHh
Q psy15351         58 -KHESLIEEKVRK----EQS----HISEVIFTNCRNPNCKGVQKILPTLQHIS  101 (352)
Q Consensus        58 -~~~~~~~~~~~~----~~~----~~~~v~~iSa~~~~~~gi~~L~~~i~~~~  101 (352)
                       .......+++.+    ...    ..-.++++||+++  .+++++++.+.+.+
T Consensus       144 ~~~~~~~~~~~~~~f~~~~~~~~~~~iy~~~TsA~d~--~ni~~vf~~v~d~i  194 (200)
T d1zcba2         144 PHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINT--ENIRLVFRDVKDTI  194 (200)
T ss_dssp             TTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCH--HHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHhccCCCCCceEEEEeeeeCc--HHHHHHHHHHHHHH
Confidence             111223333322    110    0012457999999  99999998887654

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.28  E-value=0.034  Score=44.78  Aligned_cols=54  Identities=19%  Similarity=0.185  Sum_probs=36.2

Q ss_pred             HHHHHHhhccCEEEEEEcCCCCCCCcCH---HHHHHH---h----CCCCEEEEEEcccCCCccc
Q psy15351          6 KDIEKHLKNVDIVIEVHDSRMPFTGRNH---LLQQSV---Q----NIRPMVLVLNKRDLINSKH   59 (352)
Q Consensus         6 ~~~~~~i~~aD~vl~VvDar~p~~~~~~---~l~~~l---~----~~k~~ilVlNK~Dl~~~~~   59 (352)
                      +.....+..++.+++++|+.........   .+.+.+   .    .+.|+++|+||+|+.+...
T Consensus        65 ~~~~~~~~~~~~~i~~vd~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~  128 (209)
T d1nrjb_          65 DYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARP  128 (209)
T ss_dssp             HHHHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCC
T ss_pred             HHHHHHhhhccccceEEEEecccccHHHHHHHHHHHHHHHHHHHhccCCeEEEEEeecccccCc
Confidence            3455677888999999998754433221   111111   1    5789999999999987554

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.23  E-value=0.0031  Score=50.64  Aligned_cols=22  Identities=36%  Similarity=0.656  Sum_probs=19.5

Q ss_pred             eEEEEeCCCCCChHHHHHHHhC
Q psy15351        169 TTVMVVGVPNVGKSSIINALRS  190 (352)
Q Consensus       169 ~~v~i~G~pnvGKStliN~l~~  190 (352)
                      .-|.++|.+||||||+++.|..
T Consensus         3 ~iivl~GpsG~GK~tl~~~L~~   24 (182)
T d1znwa1           3 RVVVLSGPSAVGKSTVVRCLRE   24 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHh
Confidence            3478999999999999999975

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=95.11  E-value=0.0068  Score=46.58  Aligned_cols=21  Identities=24%  Similarity=0.539  Sum_probs=18.5

Q ss_pred             EEEEeCCCCCChHHHHHHHhC
Q psy15351        170 TVMVVGVPNVGKSSIINALRS  190 (352)
Q Consensus       170 ~v~i~G~pnvGKStliN~l~~  190 (352)
                      -|.++|.||+||||+.+.|..
T Consensus         4 lIii~G~pGsGKTTla~~L~~   24 (152)
T d1ly1a_           4 IILTIGCPGSGKSTWAREFIA   24 (152)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            377899999999999999863

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=95.10  E-value=0.0047  Score=49.79  Aligned_cols=24  Identities=25%  Similarity=0.464  Sum_probs=21.5

Q ss_pred             cceEEEEeCCCCCChHHHHHHHhC
Q psy15351        167 YNTTVMVVGVPNVGKSSIINALRS  190 (352)
Q Consensus       167 ~~~~v~i~G~pnvGKStliN~l~~  190 (352)
                      .+++|.++|.||+||||+...|..
T Consensus         2 ~Pm~I~i~GppGsGKsT~a~~La~   25 (189)
T d1zaka1           2 DPLKVMISGAPASGKGTQCELIKT   25 (189)
T ss_dssp             CSCCEEEEESTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            467899999999999999999974

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=94.99  E-value=0.0092  Score=51.28  Aligned_cols=25  Identities=40%  Similarity=0.810  Sum_probs=22.0

Q ss_pred             ceeEEEeccCCCCchhHHHHHhhhh
Q psy15351        114 NTTVMVVGVPNVGKSSIINALRSSH  138 (352)
Q Consensus       114 ~~~~~~~g~~nvgksslin~l~~~~  138 (352)
                      ...++++|.|||||||+||+|.++.
T Consensus       112 ~~~v~vvG~PNvGKSsliN~L~~~~  136 (273)
T d1puja_         112 AIRALIIGIPNVGKSTLINRLAKKN  136 (273)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred             ceEEEEEecCccchhhhhhhhhccc
Confidence            5678999999999999999999753

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=94.91  E-value=0.0069  Score=48.13  Aligned_cols=22  Identities=18%  Similarity=0.525  Sum_probs=19.8

Q ss_pred             eEEEEeCCCCCChHHHHHHHhC
Q psy15351        169 TTVMVVGVPNVGKSSIINALRS  190 (352)
Q Consensus       169 ~~v~i~G~pnvGKStliN~l~~  190 (352)
                      ++|.++|.||+||||+...|..
T Consensus         1 m~I~i~G~pGSGKsT~a~~La~   22 (182)
T d1zina1           1 MNLVLMGLPGAGKGTQAEKIVA   22 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999999974

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=94.90  E-value=0.0076  Score=48.61  Aligned_cols=25  Identities=24%  Similarity=0.344  Sum_probs=21.8

Q ss_pred             CcceEEEEeCCCCCChHHHHHHHhC
Q psy15351        166 VYNTTVMVVGVPNVGKSSIINALRS  190 (352)
Q Consensus       166 ~~~~~v~i~G~pnvGKStliN~l~~  190 (352)
                      .++..|.++|.||+||||+...|..
T Consensus         4 ~kp~iI~i~G~pGSGKsT~a~~La~   28 (194)
T d1qf9a_           4 SKPNVVFVLGGPGSGKGTQCANIVR   28 (194)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHH
Confidence            3567899999999999999999974

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.89  E-value=0.006  Score=48.03  Aligned_cols=22  Identities=36%  Similarity=0.587  Sum_probs=19.2

Q ss_pred             eEEEEeCCCCCChHHHHHHHhC
Q psy15351        169 TTVMVVGVPNVGKSSIINALRS  190 (352)
Q Consensus       169 ~~v~i~G~pnvGKStliN~l~~  190 (352)
                      .+|.++|+|||||||+-..|..
T Consensus         2 p~IvliG~~G~GKSTig~~La~   23 (165)
T d2iyva1           2 PKAVLVGLPGSGKSTIGRRLAK   23 (165)
T ss_dssp             CSEEEECSTTSSHHHHHHHHHH
T ss_pred             CcEEEECCCCCCHHHHHHHHHH
Confidence            3588999999999999999974

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=94.83  E-value=0.0072  Score=47.81  Aligned_cols=21  Identities=33%  Similarity=0.525  Sum_probs=18.8

Q ss_pred             EEEEeCCCCCChHHHHHHHhC
Q psy15351        170 TVMVVGVPNVGKSSIINALRS  190 (352)
Q Consensus       170 ~v~i~G~pnvGKStliN~l~~  190 (352)
                      .|+|.|.||+||||+++.|..
T Consensus         3 iI~i~G~~GsGKsT~~~~L~~   23 (190)
T d1khta_           3 VVVVTGVPGVGSTTSSQLAMD   23 (190)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            488999999999999999863

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=94.81  E-value=0.0081  Score=46.82  Aligned_cols=21  Identities=29%  Similarity=0.455  Sum_probs=19.1

Q ss_pred             EEEEeCCCCCChHHHHHHHhC
Q psy15351        170 TVMVVGVPNVGKSSIINALRS  190 (352)
Q Consensus       170 ~v~i~G~pnvGKStliN~l~~  190 (352)
                      -|.+.|.||+||||+.+.|..
T Consensus         4 lI~i~G~~GsGKTTva~~L~~   24 (176)
T d2bdta1           4 LYIITGPAGVGKSTTCKRLAA   24 (176)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            488999999999999999984

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=94.75  E-value=0.0096  Score=48.12  Aligned_cols=25  Identities=16%  Similarity=0.369  Sum_probs=22.3

Q ss_pred             CcceEEEEeCCCCCChHHHHHHHhC
Q psy15351        166 VYNTTVMVVGVPNVGKSSIINALRS  190 (352)
Q Consensus       166 ~~~~~v~i~G~pnvGKStliN~l~~  190 (352)
                      .+.++|.++|.||+||||+...|..
T Consensus         4 ~r~mrIiliG~PGSGKtT~a~~La~   28 (189)
T d2ak3a1           4 ARLLRAAIMGAPGSGKGTVSSRITK   28 (189)
T ss_dssp             SCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcceeEEEECCCCCCHHHHHHHHHH
Confidence            3568999999999999999999974

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.73  E-value=0.0094  Score=47.45  Aligned_cols=25  Identities=32%  Similarity=0.444  Sum_probs=21.7

Q ss_pred             CcceEEEEeCCCCCChHHHHHHHhC
Q psy15351        166 VYNTTVMVVGVPNVGKSSIINALRS  190 (352)
Q Consensus       166 ~~~~~v~i~G~pnvGKStliN~l~~  190 (352)
                      +.+.-|+++|.||+||||+...+..
T Consensus        12 ~~p~liil~G~pGsGKST~a~~l~~   36 (172)
T d1yj5a2          12 PNPEVVVAVGFPGAGKSTFIQEHLV   36 (172)
T ss_dssp             SSCCEEEEECCTTSSHHHHHHHHTG
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHH
Confidence            4567899999999999999998864

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=94.68  E-value=0.0097  Score=47.59  Aligned_cols=25  Identities=20%  Similarity=0.323  Sum_probs=22.3

Q ss_pred             CcceEEEEeCCCCCChHHHHHHHhC
Q psy15351        166 VYNTTVMVVGVPNVGKSSIINALRS  190 (352)
Q Consensus       166 ~~~~~v~i~G~pnvGKStliN~l~~  190 (352)
                      ..++-|+|.|.+|+|||||.+.|..
T Consensus        20 ~~~~iIgI~G~~GSGKSTla~~L~~   44 (198)
T d1rz3a_          20 AGRLVLGIDGLSRSGKTTLANQLSQ   44 (198)
T ss_dssp             SSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHH
Confidence            4578899999999999999999974

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=94.57  E-value=0.0089  Score=50.44  Aligned_cols=25  Identities=20%  Similarity=0.359  Sum_probs=22.6

Q ss_pred             CcceEEEEeCCCCCChHHHHHHHhC
Q psy15351        166 VYNTTVMVVGVPNVGKSSIINALRS  190 (352)
Q Consensus       166 ~~~~~v~i~G~pnvGKStliN~l~~  190 (352)
                      +++-.++++|.+|+|||||++.|.+
T Consensus        27 ~~Ge~vaIvG~sGsGKSTLl~ll~g   51 (241)
T d2pmka1          27 KQGEVIGIVGRSGSGKSTLTKLIQR   51 (241)
T ss_dssp             ETTCEEEEECSTTSSHHHHHHHHTT
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHh
Confidence            4566899999999999999999997

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=94.56  E-value=0.0095  Score=47.54  Aligned_cols=22  Identities=18%  Similarity=0.548  Sum_probs=19.9

Q ss_pred             eEEEEeCCCCCChHHHHHHHhC
Q psy15351        169 TTVMVVGVPNVGKSSIINALRS  190 (352)
Q Consensus       169 ~~v~i~G~pnvGKStliN~l~~  190 (352)
                      ++|.++|.||+||||+...|..
T Consensus         1 M~I~i~G~pGSGKsT~a~~La~   22 (182)
T d1s3ga1           1 MNIVLMGLPGAGKGTQADRIVE   22 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999999974

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=94.54  E-value=0.011  Score=49.92  Aligned_cols=26  Identities=27%  Similarity=0.317  Sum_probs=23.1

Q ss_pred             CcceEEEEeCCCCCChHHHHHHHhCC
Q psy15351        166 VYNTTVMVVGVPNVGKSSIINALRSS  191 (352)
Q Consensus       166 ~~~~~v~i~G~pnvGKStliN~l~~~  191 (352)
                      +++-.++++|.+|+|||||++.|.+.
T Consensus        26 ~~Ge~vaivG~sGsGKSTLl~ll~gl   51 (242)
T d1mv5a_          26 QPNSIIAFAGPSGGGKSTIFSLLERF   51 (242)
T ss_dssp             CTTEEEEEECCTTSSHHHHHHHHTTS
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHHh
Confidence            45678999999999999999999974

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=94.53  E-value=0.0069  Score=49.82  Aligned_cols=22  Identities=41%  Similarity=0.465  Sum_probs=19.6

Q ss_pred             eEEEEeCCCCCChHHHHHHHhC
Q psy15351        169 TTVMVVGVPNVGKSSIINALRS  190 (352)
Q Consensus       169 ~~v~i~G~pnvGKStliN~l~~  190 (352)
                      .-+.++|.+||||+||++.|+.
T Consensus         3 ~livi~GPSG~GK~tl~~~L~~   24 (205)
T d1s96a_           3 TLYIVSAPSGAGKSSLIQALLK   24 (205)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHh
Confidence            4578999999999999999985

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.51  E-value=0.0064  Score=48.74  Aligned_cols=26  Identities=27%  Similarity=0.415  Sum_probs=22.5

Q ss_pred             cCcceEEEEeCCCCCChHHHHHHHhC
Q psy15351        165 EVYNTTVMVVGVPNVGKSSIINALRS  190 (352)
Q Consensus       165 ~~~~~~v~i~G~pnvGKStliN~l~~  190 (352)
                      ..++..|.++|.||+||||+-+.|..
T Consensus        16 ~~~g~vI~L~G~pGSGKTTiAk~La~   41 (195)
T d1x6va3          16 GFRGCTVWLTGLSGAGKTTVSMALEE   41 (195)
T ss_dssp             SCCCEEEEEESSCHHHHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            34678899999999999999999973

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=94.32  E-value=0.011  Score=45.49  Aligned_cols=21  Identities=33%  Similarity=0.477  Sum_probs=19.0

Q ss_pred             EEEEeCCCCCChHHHHHHHhC
Q psy15351        170 TVMVVGVPNVGKSSIINALRS  190 (352)
Q Consensus       170 ~v~i~G~pnvGKStliN~l~~  190 (352)
                      .|.++|.||+||||+-..|..
T Consensus         4 ~I~l~G~~GsGKSTvak~La~   24 (169)
T d1kaga_           4 NIFLVGPMGAGKSTIGRQLAQ   24 (169)
T ss_dssp             CEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            488999999999999999974

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=94.29  E-value=0.011  Score=48.42  Aligned_cols=24  Identities=17%  Similarity=0.410  Sum_probs=21.5

Q ss_pred             cceEEEEeCCCCCChHHHHHHHhC
Q psy15351        167 YNTTVMVVGVPNVGKSSIINALRS  190 (352)
Q Consensus       167 ~~~~v~i~G~pnvGKStliN~l~~  190 (352)
                      ++-.++++|..|+|||||++.|++
T Consensus        26 ~Gei~~l~G~NGsGKSTLl~~i~g   49 (200)
T d1sgwa_          26 KGNVVNFHGPNGIGKTTLLKTIST   49 (200)
T ss_dssp             TTCCEEEECCTTSSHHHHHHHHTT
T ss_pred             CCCEEEEECCCCChHHHHHHHHhc
Confidence            445689999999999999999997

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.29  E-value=0.039  Score=43.74  Aligned_cols=90  Identities=16%  Similarity=0.144  Sum_probs=53.1

Q ss_pred             HHhhccCEEEEEEcCCCCCCCcC---------H---HHHHHHh----CCCCEEEEEEcccCCCc----------------
Q psy15351         10 KHLKNVDIVIEVHDSRMPFTGRN---------H---LLQQSVQ----NIRPMVLVLNKRDLINS----------------   57 (352)
Q Consensus        10 ~~i~~aD~vl~VvDar~p~~~~~---------~---~l~~~l~----~~k~~ilVlNK~Dl~~~----------------   57 (352)
                      .....++.+++|+|..+......         .   .+...+.    ...|++++.||+|+...                
T Consensus        61 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~e~~~~~~~i~~~~~~~~~~~~lv~Nk~d~~~~~~~~~~~~~~~~~~~~  140 (195)
T d1svsa1          61 HCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAG  140 (195)
T ss_dssp             GGCTTCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTSCGGGTCTTCCS
T ss_pred             hcccCCceeeeEEeecccchHHHHhhhhHHHHHHHHHHHHHhcccccCCCCEEEEeccchhhhhhccchHHHHHhhhhcC
Confidence            35678999999999865432211         1   1122222    46799999999996321                


Q ss_pred             -cchHHHHHHH----Hhhc--CCCC--cEEEeecCCCCCCCHHHHHHHHHHHh
Q psy15351         58 -KHESLIEEKV----RKEQ--SHIS--EVIFTNCRNPNCKGVQKILPTLQHIS  101 (352)
Q Consensus        58 -~~~~~~~~~~----~~~~--~~~~--~v~~iSa~~~~~~gi~~L~~~i~~~~  101 (352)
                       ....+...++    .+..  ....  .++++||+++  .|++++++.+.+.+
T Consensus       141 ~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~tSA~~~--~nv~~~F~~v~~~i  191 (195)
T d1svsa1         141 SNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDT--KNVQFVFDAVTDVI  191 (195)
T ss_dssp             CSSHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCH--HHHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHHHhcccCCCcceeEEEEeECC--HhHHHHHHHHHHHH
Confidence             1112222222    2211  0111  2557999999  99999999887654

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.29  E-value=0.012  Score=46.78  Aligned_cols=22  Identities=27%  Similarity=0.484  Sum_probs=19.9

Q ss_pred             eEEEEeCCCCCChHHHHHHHhC
Q psy15351        169 TTVMVVGVPNVGKSSIINALRS  190 (352)
Q Consensus       169 ~~v~i~G~pnvGKStliN~l~~  190 (352)
                      ++|.++|.||+||||+...|..
T Consensus         1 m~I~i~G~pGsGKsT~a~~La~   22 (181)
T d2cdna1           1 MRVLLLGPPGAGKGTQAVKLAE   22 (181)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999999974

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.25  E-value=0.011  Score=47.31  Aligned_cols=21  Identities=33%  Similarity=0.591  Sum_probs=19.2

Q ss_pred             EEEEeCCCCCChHHHHHHHhC
Q psy15351        170 TVMVVGVPNVGKSSIINALRS  190 (352)
Q Consensus       170 ~v~i~G~pnvGKStliN~l~~  190 (352)
                      -|.++|.+|+||+||++.|..
T Consensus         5 ~ivl~Gpsg~GK~tl~~~L~~   25 (178)
T d1kgda_           5 TLVLLGAHGVGRRHIKNTLIT   25 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHH
Confidence            488999999999999999984

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.19  E-value=0.014  Score=46.46  Aligned_cols=23  Identities=22%  Similarity=0.502  Sum_probs=20.7

Q ss_pred             ceEEEEeCCCCCChHHHHHHHhC
Q psy15351        168 NTTVMVVGVPNVGKSSIINALRS  190 (352)
Q Consensus       168 ~~~v~i~G~pnvGKStliN~l~~  190 (352)
                      .++|.++|.||+||||+...|..
T Consensus         2 ~mrIvl~G~pGSGKtT~a~~La~   24 (180)
T d1akya1           2 SIRMVLIGPPGAGKGTQAPNLQE   24 (180)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            36899999999999999999974

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=94.17  E-value=0.012  Score=49.98  Aligned_cols=26  Identities=31%  Similarity=0.351  Sum_probs=22.7

Q ss_pred             CcceEEEEeCCCCCChHHHHHHHhCC
Q psy15351        166 VYNTTVMVVGVPNVGKSSIINALRSS  191 (352)
Q Consensus       166 ~~~~~v~i~G~pnvGKStliN~l~~~  191 (352)
                      +++-.++++|.+|+|||||++.|.+.
T Consensus        39 ~~Ge~iaivG~sGsGKSTLl~ll~gl   64 (253)
T d3b60a1          39 PAGKTVALVGRSGSGKSTIASLITRF   64 (253)
T ss_dssp             CTTCEEEEEECTTSSHHHHHHHHTTT
T ss_pred             cCCCEEEEECCCCChHHHHHHHHhcc
Confidence            34567999999999999999999873

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.13  E-value=0.014  Score=49.52  Aligned_cols=26  Identities=23%  Similarity=0.279  Sum_probs=22.9

Q ss_pred             CcceEEEEeCCCCCChHHHHHHHhCC
Q psy15351        166 VYNTTVMVVGVPNVGKSSIINALRSS  191 (352)
Q Consensus       166 ~~~~~v~i~G~pnvGKStliN~l~~~  191 (352)
                      +++=.++++|.+|+|||||++.|.+.
T Consensus        38 ~~Ge~vaivG~sGsGKSTLl~li~gl   63 (251)
T d1jj7a_          38 RPGEVTALVGPNGSGKSTVAALLQNL   63 (251)
T ss_dssp             CTTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHhcc
Confidence            45668999999999999999999873

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=94.11  E-value=0.013  Score=45.95  Aligned_cols=21  Identities=29%  Similarity=0.537  Sum_probs=18.7

Q ss_pred             EEEEeCCCCCChHHHHHHHhC
Q psy15351        170 TVMVVGVPNVGKSSIINALRS  190 (352)
Q Consensus       170 ~v~i~G~pnvGKStliN~l~~  190 (352)
                      +|.++|+||+||||+-..|..
T Consensus         2 ~I~liG~~GsGKsTi~k~La~   22 (161)
T d1viaa_           2 NIVFIGFMGSGKSTLARALAK   22 (161)
T ss_dssp             CEEEECCTTSCHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHH
Confidence            488999999999999999874

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.07  E-value=0.0083  Score=48.31  Aligned_cols=20  Identities=25%  Similarity=0.564  Sum_probs=18.7

Q ss_pred             EEEeCCCCCChHHHHHHHhC
Q psy15351        171 VMVVGVPNVGKSSIINALRS  190 (352)
Q Consensus       171 v~i~G~pnvGKStliN~l~~  190 (352)
                      |.++|.+||||+||++.|..
T Consensus         4 Ivl~GpsG~GK~tl~~~L~~   23 (186)
T d1gkya_           4 IVISGPSGTGKSTLLKKLFA   23 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            78999999999999999974

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=94.03  E-value=0.013  Score=49.04  Aligned_cols=24  Identities=25%  Similarity=0.423  Sum_probs=21.3

Q ss_pred             cceEEEEeCCCCCChHHHHHHHhC
Q psy15351        167 YNTTVMVVGVPNVGKSSIINALRS  190 (352)
Q Consensus       167 ~~~~v~i~G~pnvGKStliN~l~~  190 (352)
                      ++=.++++|.+|+|||||++.|.+
T Consensus        30 ~Ge~~~iiG~sGsGKSTLl~~i~g   53 (230)
T d1l2ta_          30 EGEFVSIMGPSGSGKSTMLNIIGC   53 (230)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTT
T ss_pred             CCCEEEEECCCCCCcchhhHhccC
Confidence            445699999999999999999986

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.02  E-value=0.035  Score=44.18  Aligned_cols=90  Identities=16%  Similarity=0.160  Sum_probs=53.8

Q ss_pred             HhhccCEEEEEEcCCCCCCCc------C------HHHHHHHh----CCCCEEEEEEcccCCCccc---------------
Q psy15351         11 HLKNVDIVIEVHDSRMPFTGR------N------HLLQQSVQ----NIRPMVLVLNKRDLINSKH---------------   59 (352)
Q Consensus        11 ~i~~aD~vl~VvDar~p~~~~------~------~~l~~~l~----~~k~~ilVlNK~Dl~~~~~---------------   59 (352)
                      ....++.+++++|+.+.....      .      ..+...+.    .+.|+++|.||.|+.....               
T Consensus        65 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~v~NK~Dl~~~~~~~~~~~~~~~~~~~~  144 (200)
T d2bcjq2          65 CFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGP  144 (200)
T ss_dssp             GCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHHCGGGSSSEEEEEEECHHHHHHHTTTSCHHHHSTTCCSC
T ss_pred             cccccceeeEeeeccchhhhhhhhccccchHHHHHHHHHHHhhhhccCccEEEecchhhhhhhcccchHHHHhcccccCC
Confidence            457889999999987542211      1      11223332    4689999999999742210               


Q ss_pred             ---hHHHHHH----HHhhcCCCC---cEEEeecCCCCCCCHHHHHHHHHHHhh
Q psy15351         60 ---ESLIEEK----VRKEQSHIS---EVIFTNCRNPNCKGVQKILPTLQHISD  102 (352)
Q Consensus        60 ---~~~~~~~----~~~~~~~~~---~v~~iSa~~~~~~gi~~L~~~i~~~~~  102 (352)
                         .....++    +.+......   .++++||+++  .|++++++.+.+.+-
T Consensus       145 ~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~tSAk~~--~ni~~vF~~i~~~I~  195 (200)
T d2bcjq2         145 QRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDT--ENIRFVFAAVKDTIL  195 (200)
T ss_dssp             SSCHHHHHHHHHHHHHTTCSCTTSCEEEEECCTTCH--HHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHhcccCCCceEEEEeEEEcC--HhHHHHHHHHHHHHH
Confidence               1111222    222111101   2567899999  999999998876653

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=93.99  E-value=0.019  Score=44.67  Aligned_cols=24  Identities=21%  Similarity=0.397  Sum_probs=20.2

Q ss_pred             cceEEEEeCCCCCChHHHHHHHhC
Q psy15351        167 YNTTVMVVGVPNVGKSSIINALRS  190 (352)
Q Consensus       167 ~~~~v~i~G~pnvGKStliN~l~~  190 (352)
                      .+--+.++|.||+||||+...|..
T Consensus         5 ~~~iivl~G~~GsGKsT~a~~La~   28 (171)
T d1knqa_           5 DHHIYVLMGVSGSGKSAVASEVAH   28 (171)
T ss_dssp             TSEEEEEECSTTSCHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            345577899999999999999974

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=93.98  E-value=0.013  Score=46.49  Aligned_cols=22  Identities=18%  Similarity=0.445  Sum_probs=19.7

Q ss_pred             eEEEEeCCCCCChHHHHHHHhC
Q psy15351        169 TTVMVVGVPNVGKSSIINALRS  190 (352)
Q Consensus       169 ~~v~i~G~pnvGKStliN~l~~  190 (352)
                      ++|.++|.||+||||....|..
T Consensus         1 m~I~i~G~pGSGKsT~~~~La~   22 (179)
T d1e4va1           1 MRIILLGAPVAGKGTQAQFIME   22 (179)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4789999999999999999874

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.91  E-value=0.015  Score=45.59  Aligned_cols=21  Identities=33%  Similarity=0.665  Sum_probs=18.7

Q ss_pred             EEEEeCCCCCChHHHHHHHhC
Q psy15351        170 TVMVVGVPNVGKSSIINALRS  190 (352)
Q Consensus       170 ~v~i~G~pnvGKStliN~l~~  190 (352)
                      .|.+.|.||+|||||+..+..
T Consensus         3 ~v~ItG~~GtGKTtl~~~i~~   23 (189)
T d2i3ba1           3 HVFLTGPPGVGKTTLIHKASE   23 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHH
Confidence            388999999999999988874

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.83  E-value=0.016  Score=50.04  Aligned_cols=25  Identities=16%  Similarity=0.291  Sum_probs=22.5

Q ss_pred             CcceEEEEeCCCCCChHHHHHHHhC
Q psy15351        166 VYNTTVMVVGVPNVGKSSIINALRS  190 (352)
Q Consensus       166 ~~~~~v~i~G~pnvGKStliN~l~~  190 (352)
                      +++=.++++|.+|+|||||++.|.|
T Consensus        60 ~~Ge~vaivG~nGsGKSTLl~~i~G   84 (281)
T d1r0wa_          60 EKGEMLAITGSTGSGKTSLLMLILG   84 (281)
T ss_dssp             CTTCEEEEEESTTSSHHHHHHHHHT
T ss_pred             cCCCEEEEECCCCChHHHHHHHHhC
Confidence            4566799999999999999999997

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.81  E-value=0.0022  Score=52.40  Aligned_cols=49  Identities=18%  Similarity=0.109  Sum_probs=31.3

Q ss_pred             HHHHHHHhhccCEEEEEEcCCCCCCCcCHHHHHHHh-CCCCEEEEEEccc
Q psy15351          5 LKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQ-NIRPMVLVLNKRD   53 (352)
Q Consensus         5 ~~~~~~~i~~aD~vl~VvDar~p~~~~~~~l~~~l~-~~k~~ilVlNK~D   53 (352)
                      ++++...+...+..+.++|+..+.......+.++++ .+.+.+++.++++
T Consensus        74 ~~~~~~~~~~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~  123 (213)
T d1bifa1          74 LNDVRKFLSEEGGHVAVFDATNTTRERRAMIFNFGEQNGYKTFFVESICV  123 (213)
T ss_dssp             HHHHHHHHHTTCCSEEEEESCCCSHHHHHHHHHHHHHHTCEEEEEEECCC
T ss_pred             HHHHHHHHHhcCCCEEEeecCCccHHHHHHHHHHHHhcCCeEEEEEeecc
Confidence            344455555666667789998775554445555554 5677777777775

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=93.81  E-value=0.014  Score=46.24  Aligned_cols=20  Identities=35%  Similarity=0.785  Sum_probs=17.5

Q ss_pred             EEEeCCCCCChHHHHHHHhC
Q psy15351        171 VMVVGVPNVGKSSIINALRS  190 (352)
Q Consensus       171 v~i~G~pnvGKStliN~l~~  190 (352)
                      |.|.|.|||||||+++.|..
T Consensus         4 ivi~G~~GsGKTT~~~~La~   23 (194)
T d1nksa_           4 GIVTGIPGVGKSTVLAKVKE   23 (194)
T ss_dssp             EEEEECTTSCHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            45789999999999999974

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.80  E-value=0.019  Score=46.12  Aligned_cols=23  Identities=26%  Similarity=0.410  Sum_probs=20.6

Q ss_pred             ceEEEEeCCCCCChHHHHHHHhC
Q psy15351        168 NTTVMVVGVPNVGKSSIINALRS  190 (352)
Q Consensus       168 ~~~v~i~G~pnvGKStliN~l~~  190 (352)
                      |+.|.++|.||+||||....|..
T Consensus         1 p~iI~i~GppGSGKsT~a~~La~   23 (194)
T d1teva_           1 PLVVFVLGGPGAGKGTQCARIVE   23 (194)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            46799999999999999998874

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.65  E-value=0.021  Score=46.68  Aligned_cols=23  Identities=26%  Similarity=0.237  Sum_probs=21.1

Q ss_pred             ceEEEEeCCCCCChHHHHHHHhC
Q psy15351        168 NTTVMVVGVPNVGKSSIINALRS  190 (352)
Q Consensus       168 ~~~v~i~G~pnvGKStliN~l~~  190 (352)
                      |+-|||.|.+|+||||+.+.|..
T Consensus         2 P~iIgI~G~~gSGKSTla~~L~~   24 (213)
T d1uj2a_           2 PFLIGVSGGTASGKSSVCAKIVQ   24 (213)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            68899999999999999999974

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=93.65  E-value=0.021  Score=47.66  Aligned_cols=26  Identities=23%  Similarity=0.344  Sum_probs=22.4

Q ss_pred             CcceEEEEeCCCCCChHHHHHHHhCC
Q psy15351        166 VYNTTVMVVGVPNVGKSSIINALRSS  191 (352)
Q Consensus       166 ~~~~~v~i~G~pnvGKStliN~l~~~  191 (352)
                      +++=.++++|.+|+|||||++.+.+-
T Consensus        24 ~~Gei~~liGpsGsGKSTLl~~i~Gl   49 (232)
T d2awna2          24 HEGEFVVFVGPSGCGKSTLLRMIAGL   49 (232)
T ss_dssp             CTTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred             cCCCEEEEECCCCChHHHHHHHHhcC
Confidence            34557999999999999999999873

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=93.63  E-value=0.017  Score=45.22  Aligned_cols=22  Identities=36%  Similarity=0.625  Sum_probs=19.5

Q ss_pred             eEEEEeCCCCCChHHHHHHHhC
Q psy15351        169 TTVMVVGVPNVGKSSIINALRS  190 (352)
Q Consensus       169 ~~v~i~G~pnvGKStliN~l~~  190 (352)
                      --|.+.|.||+||||+.+.|..
T Consensus         5 ~iI~l~G~~GsGKSTia~~La~   26 (176)
T d1zp6a1           5 NILLLSGHPGSGKSTIAEALAN   26 (176)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHT
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            3588999999999999999975

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=93.60  E-value=0.018  Score=44.87  Aligned_cols=21  Identities=33%  Similarity=0.593  Sum_probs=18.7

Q ss_pred             EEEEeCCCCCChHHHHHHHhC
Q psy15351        170 TVMVVGVPNVGKSSIINALRS  190 (352)
Q Consensus       170 ~v~i~G~pnvGKStliN~l~~  190 (352)
                      -|.+.|.||+||||+.+.|..
T Consensus         5 iI~l~G~~GsGKsTva~~L~~   25 (178)
T d1qhxa_           5 MIILNGGSSAGKSGIVRCLQS   25 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            477889999999999999985

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=93.57  E-value=0.019  Score=46.08  Aligned_cols=26  Identities=23%  Similarity=0.333  Sum_probs=23.1

Q ss_pred             cCcceEEEEeCCCCCChHHHHHHHhC
Q psy15351        165 EVYNTTVMVVGVPNVGKSSIINALRS  190 (352)
Q Consensus       165 ~~~~~~v~i~G~pnvGKStliN~l~~  190 (352)
                      ..+++.|+|.|..||||||+++.|..
T Consensus         6 ~~kp~~I~ieG~~GsGKTTl~~~L~~   31 (197)
T d2vp4a1           6 GTQPFTVLIEGNIGSGKTTYLNHFEK   31 (197)
T ss_dssp             TCCCEEEEEECSTTSCHHHHHHTTGG
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHH
Confidence            35678999999999999999999975

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=93.54  E-value=0.014  Score=48.80  Aligned_cols=24  Identities=21%  Similarity=0.396  Sum_probs=21.6

Q ss_pred             cceEEEEeCCCCCChHHHHHHHhC
Q psy15351        167 YNTTVMVVGVPNVGKSSIINALRS  190 (352)
Q Consensus       167 ~~~~v~i~G~pnvGKStliN~l~~  190 (352)
                      .+=.++++|..|+|||||++.|.+
T Consensus        24 ~Gei~~iiG~nGaGKSTLl~~l~G   47 (231)
T d1l7vc_          24 AGEILHLVGPNGAGKSTLLARMAG   47 (231)
T ss_dssp             TTCEEECBCCTTSSHHHHHHHHHT
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhC
Confidence            445699999999999999999997

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=93.51  E-value=0.018  Score=48.49  Aligned_cols=25  Identities=20%  Similarity=0.412  Sum_probs=22.0

Q ss_pred             cceEEEEeCCCCCChHHHHHHHhCC
Q psy15351        167 YNTTVMVVGVPNVGKSSIINALRSS  191 (352)
Q Consensus       167 ~~~~v~i~G~pnvGKStliN~l~~~  191 (352)
                      ++=.++++|..|+|||||++.|.+.
T Consensus        31 ~Gei~~liGpnGaGKSTl~~~i~Gl   55 (240)
T d1ji0a_          31 RGQIVTLIGANGAGKTTTLSAIAGL   55 (240)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCC
Confidence            4556899999999999999999973

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=93.37  E-value=0.024  Score=47.61  Aligned_cols=26  Identities=12%  Similarity=0.226  Sum_probs=22.5

Q ss_pred             CcceEEEEeCCCCCChHHHHHHHhCC
Q psy15351        166 VYNTTVMVVGVPNVGKSSIINALRSS  191 (352)
Q Consensus       166 ~~~~~v~i~G~pnvGKStliN~l~~~  191 (352)
                      .++=.++++|..|+|||||+|.|.+.
T Consensus        26 ~~Gei~glvG~nGaGKSTLl~~l~G~   51 (238)
T d1vpla_          26 EEGEIFGLIGPNGAGKTTTLRIISTL   51 (238)
T ss_dssp             CTTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcC
Confidence            34557899999999999999999973

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=93.36  E-value=0.025  Score=47.39  Aligned_cols=25  Identities=12%  Similarity=0.308  Sum_probs=21.9

Q ss_pred             cceEEEEeCCCCCChHHHHHHHhCC
Q psy15351        167 YNTTVMVVGVPNVGKSSIINALRSS  191 (352)
Q Consensus       167 ~~~~v~i~G~pnvGKStliN~l~~~  191 (352)
                      ++=.++++|.+|+|||||++.|.+-
T Consensus        31 ~Ge~~~liGpsGaGKSTLl~~i~Gl   55 (239)
T d1v43a3          31 DGEFLVLLGPSGCGKTTTLRMIAGL   55 (239)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred             CCCEEEEECCCCChHHHHHHHHHcC
Confidence            4456999999999999999999973

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.34  E-value=0.012  Score=47.61  Aligned_cols=20  Identities=30%  Similarity=0.534  Sum_probs=18.4

Q ss_pred             EEEeCCCCCChHHHHHHHhC
Q psy15351        171 VMVVGVPNVGKSSIINALRS  190 (352)
Q Consensus       171 v~i~G~pnvGKStliN~l~~  190 (352)
                      |+++|.+||||+|+.+.|..
T Consensus         3 Ivl~GPsGsGK~tl~~~L~~   22 (190)
T d1lvga_           3 VVLSGPSGAGKSTLLKKLFQ   22 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            78999999999999999974

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=93.28  E-value=0.024  Score=45.41  Aligned_cols=24  Identities=29%  Similarity=0.346  Sum_probs=21.6

Q ss_pred             cceEEEEeCCCCCChHHHHHHHhC
Q psy15351        167 YNTTVMVVGVPNVGKSSIINALRS  190 (352)
Q Consensus       167 ~~~~v~i~G~pnvGKStliN~l~~  190 (352)
                      .++-||+.|.+|+||||+.+.|..
T Consensus         2 ~p~IIgitG~~gSGKstva~~l~~   25 (191)
T d1uf9a_           2 HPIIIGITGNIGSGKSTVAALLRS   25 (191)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            468899999999999999999974

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=93.24  E-value=0.023  Score=47.71  Aligned_cols=22  Identities=18%  Similarity=0.365  Sum_probs=19.7

Q ss_pred             EEEEeCCCCCChHHHHHHHhCC
Q psy15351        170 TVMVVGVPNVGKSSIINALRSS  191 (352)
Q Consensus       170 ~v~i~G~pnvGKStliN~l~~~  191 (352)
                      .++++|..|+|||||++.|.+-
T Consensus        26 ~~~liGpnGaGKSTll~~i~Gl   47 (240)
T d2onka1          26 YCVLLGPTGAGKSVFLELIAGI   47 (240)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCChHHHHHHHHHcC
Confidence            4679999999999999999973

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=93.23  E-value=0.022  Score=44.80  Aligned_cols=21  Identities=19%  Similarity=0.419  Sum_probs=18.3

Q ss_pred             EEEEeCCCCCChHHHHHHHhC
Q psy15351        170 TVMVVGVPNVGKSSIINALRS  190 (352)
Q Consensus       170 ~v~i~G~pnvGKStliN~l~~  190 (352)
                      .|.++|.||+||||+-+.|..
T Consensus         4 ~Iil~G~~GsGKSTia~~LA~   24 (170)
T d1e6ca_           4 PIFMVGARGCGMTTVGRELAR   24 (170)
T ss_dssp             CEEEESCTTSSHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHH
Confidence            367899999999999999963

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=93.20  E-value=0.016  Score=49.29  Aligned_cols=25  Identities=36%  Similarity=0.472  Sum_probs=22.4

Q ss_pred             CcceEEEEeCCCCCChHHHHHHHhC
Q psy15351        166 VYNTTVMVVGVPNVGKSSIINALRS  190 (352)
Q Consensus       166 ~~~~~v~i~G~pnvGKStliN~l~~  190 (352)
                      +++-.++++|.+|+|||||++.|.+
T Consensus        42 ~~Ge~vaivG~sGsGKSTLl~ll~g   66 (255)
T d2hyda1          42 EKGETVAFVGMSGGGKSTLINLIPR   66 (255)
T ss_dssp             CTTCEEEEECSTTSSHHHHHTTTTT
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHHh
Confidence            4566899999999999999999987

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=93.17  E-value=0.025  Score=47.49  Aligned_cols=24  Identities=13%  Similarity=0.360  Sum_probs=21.3

Q ss_pred             cceEEEEeCCCCCChHHHHHHHhC
Q psy15351        167 YNTTVMVVGVPNVGKSSIINALRS  190 (352)
Q Consensus       167 ~~~~v~i~G~pnvGKStliN~l~~  190 (352)
                      ++=.++++|.+|+|||||++.|.+
T Consensus        28 ~Ge~~~liG~sGaGKSTll~~i~g   51 (240)
T d1g2912          28 DGEFMILLGPSGCGKTTTLRMIAG   51 (240)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHHT
T ss_pred             CCCEEEEECCCCChHHHHHHHHhc
Confidence            344689999999999999999997

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=93.11  E-value=0.015  Score=48.51  Aligned_cols=25  Identities=12%  Similarity=0.282  Sum_probs=21.8

Q ss_pred             cceEEEEeCCCCCChHHHHHHHhCC
Q psy15351        167 YNTTVMVVGVPNVGKSSIINALRSS  191 (352)
Q Consensus       167 ~~~~v~i~G~pnvGKStliN~l~~~  191 (352)
                      ++=.++++|.+|+|||||++.|.+-
T Consensus        25 ~Ge~~~liGpsGaGKSTll~~l~Gl   49 (229)
T d3d31a2          25 SGEYFVILGPTGAGKTLFLELIAGF   49 (229)
T ss_dssp             TTCEEEEECCCTHHHHHHHHHHHTS
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhcC
Confidence            3456899999999999999999973

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=93.09  E-value=0.035  Score=46.08  Aligned_cols=23  Identities=17%  Similarity=0.520  Sum_probs=20.3

Q ss_pred             ceEEEEeCCCCCChHHHHHHHhC
Q psy15351        168 NTTVMVVGVPNVGKSSIINALRS  190 (352)
Q Consensus       168 ~~~v~i~G~pnvGKStliN~l~~  190 (352)
                      ...+.+.|.||+||||+.+++.+
T Consensus        35 ~~~~Ll~GPpG~GKTtla~~la~   57 (239)
T d1ixsb2          35 LEHLLLFGPPGLGKTTLAHVIAH   57 (239)
T ss_dssp             CCCEEEECCTTSCHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHH
Confidence            34588999999999999999985

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=93.04  E-value=0.02  Score=48.05  Aligned_cols=24  Identities=25%  Similarity=0.393  Sum_probs=21.4

Q ss_pred             cceEEEEeCCCCCChHHHHHHHhC
Q psy15351        167 YNTTVMVVGVPNVGKSSIINALRS  190 (352)
Q Consensus       167 ~~~~v~i~G~pnvGKStliN~l~~  190 (352)
                      .+=.++++|.+|+|||||++.|.+
T Consensus        30 ~Ge~~~iiG~sGsGKSTLl~~i~G   53 (240)
T d3dhwc1          30 AGQIYGVIGASGAGKSTLIRCVNL   53 (240)
T ss_dssp             SSCEEEEEESTTSSHHHHHHHHTT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHcC
Confidence            445689999999999999999987

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=92.97  E-value=0.024  Score=46.47  Aligned_cols=25  Identities=24%  Similarity=0.379  Sum_probs=22.6

Q ss_pred             cCcceEEEEeCCCCCChHHHHHHHh
Q psy15351        165 EVYNTTVMVVGVPNVGKSSIINALR  189 (352)
Q Consensus       165 ~~~~~~v~i~G~pnvGKStliN~l~  189 (352)
                      ...++.|.+.|.||+||||+.+.|.
T Consensus        21 ~~kg~vIwltGlsGsGKTTia~~L~   45 (208)
T d1m7ga_          21 NQRGLTIWLTGLSASGKSTLAVELE   45 (208)
T ss_dssp             TSSCEEEEEECSTTSSHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHH
Confidence            3578899999999999999999996

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=92.94  E-value=0.024  Score=48.05  Aligned_cols=25  Identities=24%  Similarity=0.468  Sum_probs=21.7

Q ss_pred             cceEEEEeCCCCCChHHHHHHHhCC
Q psy15351        167 YNTTVMVVGVPNVGKSSIINALRSS  191 (352)
Q Consensus       167 ~~~~v~i~G~pnvGKStliN~l~~~  191 (352)
                      ++=.++++|..|+|||||++.|.+.
T Consensus        29 ~Gei~~liG~nGaGKSTLl~~i~Gl   53 (254)
T d1g6ha_          29 KGDVTLIIGPNGSGKSTLINVITGF   53 (254)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHCC
Confidence            3446899999999999999999973

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=92.88  E-value=0.027  Score=47.79  Aligned_cols=24  Identities=17%  Similarity=0.416  Sum_probs=21.6

Q ss_pred             cceEEEEeCCCCCChHHHHHHHhC
Q psy15351        167 YNTTVMVVGVPNVGKSSIINALRS  190 (352)
Q Consensus       167 ~~~~v~i~G~pnvGKStliN~l~~  190 (352)
                      ++=.++++|..|+|||||+++|.+
T Consensus        27 ~GEi~~iiG~sGsGKSTLl~~i~G   50 (258)
T d1b0ua_          27 AGDVISIIGSSGSGKSTFLRCINF   50 (258)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHTT
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHc
Confidence            455799999999999999999987

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=92.86  E-value=0.021  Score=47.39  Aligned_cols=20  Identities=40%  Similarity=0.727  Sum_probs=18.0

Q ss_pred             EEeccCCCCchhHHHHHhhh
Q psy15351        118 MVVGVPNVGKSSIINALRSS  137 (352)
Q Consensus       118 ~~~g~~nvgksslin~l~~~  137 (352)
                      +++|.++|||||+||+|.+.
T Consensus        99 ~~~G~SGVGKSTLiN~L~~~  118 (225)
T d1u0la2          99 TMAGLSGVGKSSLLNAINPG  118 (225)
T ss_dssp             EEECSTTSSHHHHHHHHSTT
T ss_pred             EEECCCCCCHHHHHHhhcch
Confidence            58999999999999999864

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=92.75  E-value=0.037  Score=46.47  Aligned_cols=24  Identities=29%  Similarity=0.429  Sum_probs=21.0

Q ss_pred             cceEEEEeCCCCCChHHHHHHHhC
Q psy15351        167 YNTTVMVVGVPNVGKSSIINALRS  190 (352)
Q Consensus       167 ~~~~v~i~G~pnvGKStliN~l~~  190 (352)
                      .+.-|.++|.||+||||+..+|.+
T Consensus        31 ~P~~ilL~GpPGtGKT~la~~la~   54 (273)
T d1gvnb_          31 SPTAFLLGGQPGSGKTSLRSAIFE   54 (273)
T ss_dssp             SCEEEEEECCTTSCTHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            455688999999999999999985

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=92.44  E-value=0.077  Score=44.73  Aligned_cols=62  Identities=19%  Similarity=0.243  Sum_probs=37.1

Q ss_pred             ceeEEEeccCCCCchhHHHHHhhhhcccCCCCCCCcchhhhhccccccccccCcceEEEEeCCCCCChH
Q psy15351        114 NTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKS  182 (352)
Q Consensus       114 ~~~~~~~g~~nvgksslin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~G~pnvGKS  182 (352)
                      ...++++|.+|+||||++|++.++......  +..+...+..    .. .....+..+.++-.||.+.+
T Consensus        32 ~l~I~LvG~tg~GKSSliN~ilg~~~~~vs--~~~~~T~~~~----~~-~~~~~g~~i~viDTPGl~~~   93 (257)
T d1h65a_          32 SLTILVMGKGGVGKSSTVNSIIGERVVSIS--PFQSEGPRPV----MV-SRSRAGFTLNIIDTPGLIEG   93 (257)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHTSCCSCCC--SSSCCCSSCE----EE-EEEETTEEEEEEECCCSEET
T ss_pred             CcEEEEECCCCCcHHHHHHHHhCCCceeec--CCCCcceeEE----EE-EEEeccEEEEEEeeecccCC
Confidence            567899999999999999999875432111  1111111110    00 01124567888888887654

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.28  E-value=0.048  Score=43.69  Aligned_cols=24  Identities=25%  Similarity=0.421  Sum_probs=20.7

Q ss_pred             cceEEEEeCCCCCChHHHHHHHhC
Q psy15351        167 YNTTVMVVGVPNVGKSSIINALRS  190 (352)
Q Consensus       167 ~~~~v~i~G~pnvGKStliN~l~~  190 (352)
                      ....|.++|.||+||||+...|..
T Consensus         7 ~~~iI~i~GppGSGKsT~a~~La~   30 (196)
T d1ukza_           7 QVSVIFVLGGPGAGKGTQCEKLVK   30 (196)
T ss_dssp             TCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            345688899999999999999985

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=92.12  E-value=0.06  Score=44.18  Aligned_cols=26  Identities=31%  Similarity=0.367  Sum_probs=21.6

Q ss_pred             cCcceEEEEeCCCCCChHHHHHHHhC
Q psy15351        165 EVYNTTVMVVGVPNVGKSSIINALRS  190 (352)
Q Consensus       165 ~~~~~~v~i~G~pnvGKStliN~l~~  190 (352)
                      ..++..++++|.+||||||.+=.|..
T Consensus         8 ~~~p~vi~lvGptGvGKTTTiAKLAa   33 (213)
T d1vmaa2           8 PEPPFVIMVVGVNGTGKTTSCGKLAK   33 (213)
T ss_dssp             SSSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence            35677899999999999999877763

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=91.97  E-value=0.021  Score=47.94  Aligned_cols=25  Identities=12%  Similarity=0.298  Sum_probs=22.0

Q ss_pred             cceEEEEeCCCCCChHHHHHHHhCC
Q psy15351        167 YNTTVMVVGVPNVGKSSIINALRSS  191 (352)
Q Consensus       167 ~~~~v~i~G~pnvGKStliN~l~~~  191 (352)
                      ++=.++++|.+|+|||||++.|.+-
T Consensus        30 ~Ge~~~iiG~sGsGKSTll~~i~gl   54 (242)
T d1oxxk2          30 NGERFGILGPSGAGKTTFMRIIAGL   54 (242)
T ss_dssp             TTCEEEEECSCHHHHHHHHHHHHTS
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHcC
Confidence            4457999999999999999999973

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=91.97  E-value=0.042  Score=44.05  Aligned_cols=24  Identities=25%  Similarity=0.422  Sum_probs=20.6

Q ss_pred             cceEEEEeCCCCCChHHHHHHHhC
Q psy15351        167 YNTTVMVVGVPNVGKSSIINALRS  190 (352)
Q Consensus       167 ~~~~v~i~G~pnvGKStliN~l~~  190 (352)
                      .+..|.++|.||+||||+...|..
T Consensus         7 ~~~iI~l~G~pGSGKsT~a~~La~   30 (194)
T d3adka_           7 KSKIIFVVGGPGSGKGTQCEKIVQ   30 (194)
T ss_dssp             TSCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            345688999999999999999974

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=91.86  E-value=0.1  Score=43.36  Aligned_cols=23  Identities=22%  Similarity=0.424  Sum_probs=17.4

Q ss_pred             ceEEEEeCCCCCChHHHHHHHhC
Q psy15351        168 NTTVMVVGVPNVGKSSIINALRS  190 (352)
Q Consensus       168 ~~~v~i~G~pnvGKStliN~l~~  190 (352)
                      +-.+.+.|.||+|||++++.+..
T Consensus        43 ~~~lll~GppGtGKT~l~~~l~~   65 (276)
T d1fnna2          43 YPRATLLGRPGTGKTVTLRKLWE   65 (276)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCceEEECCCCCCHHHHHHHHHH
Confidence            34577888888888888887763

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=91.67  E-value=0.048  Score=45.09  Aligned_cols=22  Identities=27%  Similarity=0.637  Sum_probs=19.7

Q ss_pred             eEEEEeCCCCCChHHHHHHHhC
Q psy15351        169 TTVMVVGVPNVGKSSIINALRS  190 (352)
Q Consensus       169 ~~v~i~G~pnvGKStliN~l~~  190 (352)
                      ..+.+.|.||+||||+.+.|..
T Consensus        36 ~~~L~~GPpGtGKT~lA~~la~   57 (238)
T d1in4a2          36 DHVLLAGPPGLGKTTLAHIIAS   57 (238)
T ss_dssp             CCEEEESSTTSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHh
Confidence            3588999999999999999985

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=91.42  E-value=0.13  Score=41.43  Aligned_cols=49  Identities=20%  Similarity=0.365  Sum_probs=32.4

Q ss_pred             eEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCCcEEEEeCCCCCCC
Q psy15351        169 TTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLP  234 (352)
Q Consensus       169 ~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~~~  234 (352)
                      -++.++|.||||||+++..|..      . ...+..|..-+          +..++-+|+..+...
T Consensus        44 ~n~lLvG~pGVGKTalv~~LA~------r-i~~~~vp~~L~----------~~~i~~ld~~~LiAg   92 (195)
T d1jbka_          44 NNPVLIGEPGVGKTAIVEGLAQ------R-IINGEVPEGLK----------GRRVLALDMGALVAG   92 (195)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH------H-HHHTCSCGGGT----------TCEEEEECHHHHHTT
T ss_pred             CCeEEEecCCcccHHHHHHHHH------H-HHhCCCCHHHc----------CceEEEeeHHHHhcc
Confidence            3589999999999999999974      1 12233332221          234677887777764

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=91.18  E-value=0.064  Score=46.61  Aligned_cols=25  Identities=24%  Similarity=0.340  Sum_probs=22.5

Q ss_pred             cCcceEEEEeCCCCCChHHHHHHHh
Q psy15351        165 EVYNTTVMVVGVPNVGKSSIINALR  189 (352)
Q Consensus       165 ~~~~~~v~i~G~pnvGKStliN~l~  189 (352)
                      .+.++-|||.|.+++||||+.+.|.
T Consensus        77 ~k~P~iIGIaG~sgSGKSTla~~L~  101 (308)
T d1sq5a_          77 QRIPYIISIAGSVAVGKSTTARVLQ  101 (308)
T ss_dssp             CCCCEEEEEEECTTSSHHHHHHHHH
T ss_pred             CCCCEEEEEeCCCCCCCcHHHHHHH
Confidence            3568999999999999999998886

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=90.92  E-value=0.065  Score=43.13  Aligned_cols=21  Identities=24%  Similarity=0.537  Sum_probs=18.8

Q ss_pred             EEEEeCCCCCChHHHHHHHhC
Q psy15351        170 TVMVVGVPNVGKSSIINALRS  190 (352)
Q Consensus       170 ~v~i~G~pnvGKStliN~l~~  190 (352)
                      -|+|.|..|+||||++..|..
T Consensus         2 lI~ieG~dGsGKST~~~~L~~   22 (208)
T d1gsia_           2 LIAIEGVDGAGKRTLVEKLSG   22 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            588999999999999998873

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=90.86  E-value=0.094  Score=42.87  Aligned_cols=25  Identities=32%  Similarity=0.484  Sum_probs=21.1

Q ss_pred             CcceEEEEeCCCCCChHHHHHHHhC
Q psy15351        166 VYNTTVMVVGVPNVGKSSIINALRS  190 (352)
Q Consensus       166 ~~~~~v~i~G~pnvGKStliN~l~~  190 (352)
                      +.+..++++|.+||||||.+-.|..
T Consensus         7 ~~p~vi~lvGptGvGKTTTiAKLA~   31 (211)
T d2qy9a2           7 KAPFVILMVGVNGVGKTTTIGKLAR   31 (211)
T ss_dssp             CTTEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHH
Confidence            4467799999999999999987763

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=90.78  E-value=0.068  Score=46.81  Aligned_cols=23  Identities=26%  Similarity=0.471  Sum_probs=20.7

Q ss_pred             ceEEEEeCCCCCChHHHHHHHhC
Q psy15351        168 NTTVMVVGVPNVGKSSIINALRS  190 (352)
Q Consensus       168 ~~~v~i~G~pnvGKStliN~l~~  190 (352)
                      ..++.|+|.+|+||||++|+|.+
T Consensus       166 ~~nili~G~tgSGKTT~l~al~~  188 (323)
T d1g6oa_         166 GKNVIVCGGTGSGKTTYIKSIME  188 (323)
T ss_dssp             TCCEEEEESTTSSHHHHHHHHGG
T ss_pred             CCCEEEEeeccccchHHHHHHhh
Confidence            34699999999999999999986

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.49  E-value=0.091  Score=45.06  Aligned_cols=25  Identities=16%  Similarity=0.094  Sum_probs=21.5

Q ss_pred             cCcceEEEEeCCCCCChHHHHHHHh
Q psy15351        165 EVYNTTVMVVGVPNVGKSSIINALR  189 (352)
Q Consensus       165 ~~~~~~v~i~G~pnvGKStliN~l~  189 (352)
                      .+.++-|||.|.+|+|||||...|.
T Consensus        24 ~~~P~iIGi~G~qGSGKSTl~~~l~   48 (286)
T d1odfa_          24 NKCPLFIFFSGPQGSGKSFTSIQIY   48 (286)
T ss_dssp             CCSCEEEEEECCTTSSHHHHHHHHH
T ss_pred             CCCCEEEEeECCCCCCHHHHHHHHH
Confidence            3568999999999999999987764

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=90.32  E-value=0.17  Score=42.94  Aligned_cols=22  Identities=32%  Similarity=0.504  Sum_probs=19.6

Q ss_pred             eEEEEeCCCCCChHHHHHHHhC
Q psy15351        169 TTVMVVGVPNVGKSSIINALRS  190 (352)
Q Consensus       169 ~~v~i~G~pnvGKStliN~l~~  190 (352)
                      -++.+||.||||||+++..|..
T Consensus        40 ~n~lLVG~~GvGKTalv~~la~   61 (268)
T d1r6bx2          40 NNPLLVGESGVGKTAIAEGLAW   61 (268)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCcEEECCCCCcHHHHHHHHHH
Confidence            3688999999999999999974

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=90.23  E-value=0.091  Score=42.63  Aligned_cols=23  Identities=30%  Similarity=0.382  Sum_probs=20.4

Q ss_pred             ceEEEEeCCCCCChHHHHHHHhC
Q psy15351        168 NTTVMVVGVPNVGKSSIINALRS  190 (352)
Q Consensus       168 ~~~v~i~G~pnvGKStliN~l~~  190 (352)
                      .+-||+.|.+|+||||+.+.|..
T Consensus         3 k~iIgitG~igSGKStv~~~l~~   25 (208)
T d1vhta_           3 RYIVALTGGIGSGKSTVANAFAD   25 (208)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CEEEEEECCCcCCHHHHHHHHHH
Confidence            35799999999999999999874

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=90.09  E-value=0.058  Score=46.92  Aligned_cols=22  Identities=45%  Similarity=0.611  Sum_probs=19.0

Q ss_pred             eEEEeccCCCCchhHHHHHhhh
Q psy15351        116 TVMVVGVPNVGKSSIINALRSS  137 (352)
Q Consensus       116 ~~~~~g~~nvgksslin~l~~~  137 (352)
                      .+.++|.|||||||++|+|-..
T Consensus         2 ~v~lvG~pn~GKStlfn~lt~~   23 (319)
T d1wxqa1           2 EIGVVGKPNVGKSTFFSAATLV   23 (319)
T ss_dssp             EEEEEECTTSSHHHHHHHHHC-
T ss_pred             cEeEECCCCCCHHHHHHHHHCC
Confidence            4679999999999999999754

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=89.93  E-value=0.024  Score=47.22  Aligned_cols=20  Identities=40%  Similarity=0.672  Sum_probs=17.6

Q ss_pred             EEeccCCCCchhHHHHHhhh
Q psy15351        118 MVVGVPNVGKSSIINALRSS  137 (352)
Q Consensus       118 ~~~g~~nvgksslin~l~~~  137 (352)
                      +++|.++|||||+||+|.+.
T Consensus       101 vl~G~SGVGKSSLiN~L~~~  120 (231)
T d1t9ha2         101 VFAGQSGVGKSSLLNAISPE  120 (231)
T ss_dssp             EEEESHHHHHHHHHHHHCC-
T ss_pred             EEECCCCccHHHHHHhhccH
Confidence            48899999999999999864

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=89.89  E-value=0.095  Score=42.53  Aligned_cols=23  Identities=17%  Similarity=0.372  Sum_probs=20.3

Q ss_pred             ceEEEEeCCCCCChHHHHHHHhC
Q psy15351        168 NTTVMVVGVPNVGKSSIINALRS  190 (352)
Q Consensus       168 ~~~v~i~G~pnvGKStliN~l~~  190 (352)
                      .+.|+|-|.||+||||.-..|..
T Consensus         3 ~i~IaIdGp~GsGKgT~ak~La~   25 (223)
T d1q3ta_           3 TIQIAIDGPASSGKSTVAKIIAK   25 (223)
T ss_dssp             CCEEEEECSSCSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            46789999999999999988874

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=89.73  E-value=0.1  Score=42.13  Aligned_cols=23  Identities=26%  Similarity=0.302  Sum_probs=20.5

Q ss_pred             ceEEEEeCCCCCChHHHHHHHhC
Q psy15351        168 NTTVMVVGVPNVGKSSIINALRS  190 (352)
Q Consensus       168 ~~~v~i~G~pnvGKStliN~l~~  190 (352)
                      .+-||+.|.+|+||||+.+.|..
T Consensus         2 ~~iIgITG~igSGKStv~~~l~~   24 (205)
T d1jjva_           2 TYIVGLTGGIGSGKTTIANLFTD   24 (205)
T ss_dssp             CEEEEEECSTTSCHHHHHHHHHT
T ss_pred             cEEEEEECCCCCCHHHHHHHHHH
Confidence            36799999999999999998874

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=89.70  E-value=0.14  Score=42.49  Aligned_cols=21  Identities=38%  Similarity=0.501  Sum_probs=18.5

Q ss_pred             EEEEeCCCCCChHHHHHHHhC
Q psy15351        170 TVMVVGVPNVGKSSIINALRS  190 (352)
Q Consensus       170 ~v~i~G~pnvGKStliN~l~~  190 (352)
                      .+++.|.+|+|||||++.+..
T Consensus        31 ~i~i~G~~G~GKTsLl~~~~~   51 (283)
T d2fnaa2          31 ITLVLGLRRTGKSSIIKIGIN   51 (283)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEcCCCCcHHHHHHHHHH
Confidence            478999999999999998864

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=89.58  E-value=0.17  Score=41.33  Aligned_cols=21  Identities=33%  Similarity=0.548  Sum_probs=18.9

Q ss_pred             EEEEeCCCCCChHHHHHHHhC
Q psy15351        170 TVMVVGVPNVGKSSIINALRS  190 (352)
Q Consensus       170 ~v~i~G~pnvGKStliN~l~~  190 (352)
                      .+.+.|.||+||||++..+..
T Consensus        47 ~lll~Gp~G~GKTtla~~iak   67 (231)
T d1iqpa2          47 HLLFAGPPGVGKTTAALALAR   67 (231)
T ss_dssp             EEEEESCTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHH
Confidence            488999999999999998874

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=89.47  E-value=0.12  Score=43.34  Aligned_cols=24  Identities=21%  Similarity=0.421  Sum_probs=21.0

Q ss_pred             cceEEEEeCCCCCChHHHHHHHhC
Q psy15351        167 YNTTVMVVGVPNVGKSSIINALRS  190 (352)
Q Consensus       167 ~~~~v~i~G~pnvGKStliN~l~~  190 (352)
                      +...|.+.|.||+|||++.+++.+
T Consensus        39 p~~~vLL~GppGtGKT~la~alA~   62 (246)
T d1d2na_          39 PLVSVLLEGPPHSGKTALAAKIAE   62 (246)
T ss_dssp             SEEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECcCCCCHHHHHHHHhh
Confidence            345699999999999999999985

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=89.20  E-value=0.13  Score=41.94  Aligned_cols=24  Identities=42%  Similarity=0.588  Sum_probs=19.9

Q ss_pred             cceEEEEeCCCCCChHHHHHHHhC
Q psy15351        167 YNTTVMVVGVPNVGKSSIINALRS  190 (352)
Q Consensus       167 ~~~~v~i~G~pnvGKStliN~l~~  190 (352)
                      .+..++++|.+||||||.+=.|..
T Consensus         5 ~~~vi~lvGptGvGKTTTiaKLA~   28 (207)
T d1okkd2           5 KGRVVLVVGVNGVGKTTTIAKLGR   28 (207)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            456789999999999999877754

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.13  E-value=0.14  Score=41.88  Aligned_cols=21  Identities=38%  Similarity=0.574  Sum_probs=18.6

Q ss_pred             EEEEeCCCCCChHHHHHHHhC
Q psy15351        170 TVMVVGVPNVGKSSIINALRS  190 (352)
Q Consensus       170 ~v~i~G~pnvGKStliN~l~~  190 (352)
                      .+.+.|.||+||||++..+..
T Consensus        35 ~lll~Gp~G~GKTtl~~~i~~   55 (237)
T d1sxjd2          35 HMLFYGPPGTGKTSTILALTK   55 (237)
T ss_dssp             CEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCChHHHHHHHHH
Confidence            378999999999999988874

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=88.92  E-value=0.14  Score=42.43  Aligned_cols=23  Identities=22%  Similarity=0.449  Sum_probs=20.5

Q ss_pred             ceEEEEeCCCCCChHHHHHHHhC
Q psy15351        168 NTTVMVVGVPNVGKSSIINALRS  190 (352)
Q Consensus       168 ~~~v~i~G~pnvGKStliN~l~~  190 (352)
                      ...+.+.|.||+||||+..++++
T Consensus        52 ~~~lll~GPpG~GKTt~a~~la~   74 (253)
T d1sxja2          52 FRAAMLYGPPGIGKTTAAHLVAQ   74 (253)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHH
Confidence            34688999999999999999986

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=88.86  E-value=0.17  Score=41.71  Aligned_cols=21  Identities=24%  Similarity=0.309  Sum_probs=18.7

Q ss_pred             EEEEeCCCCCChHHHHHHHhC
Q psy15351        170 TVMVVGVPNVGKSSIINALRS  190 (352)
Q Consensus       170 ~v~i~G~pnvGKStliN~l~~  190 (352)
                      .+.+.|.||+||||++.++..
T Consensus        35 ~lll~Gp~G~GKTt~~~~la~   55 (252)
T d1sxje2          35 HLLLYGPNGTGKKTRCMALLE   55 (252)
T ss_dssp             CEEEECSTTSSHHHHHHTHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            488999999999999988864

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=88.85  E-value=0.12  Score=41.83  Aligned_cols=22  Identities=18%  Similarity=0.395  Sum_probs=19.1

Q ss_pred             eEEEEeCCCCCChHHHHHHHhC
Q psy15351        169 TTVMVVGVPNVGKSSIINALRS  190 (352)
Q Consensus       169 ~~v~i~G~pnvGKStliN~l~~  190 (352)
                      .-|+|-|.+|+||||+++.|..
T Consensus         3 kfIviEG~dGsGKsT~~~~L~~   24 (210)
T d4tmka_           3 KYIVIEGLEGAGKTTARNVVVE   24 (210)
T ss_dssp             CEEEEEECTTSCHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3588999999999999998873

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=88.79  E-value=0.094  Score=43.87  Aligned_cols=21  Identities=14%  Similarity=0.213  Sum_probs=17.6

Q ss_pred             EEEEeCCCCCChHHHHHHHhC
Q psy15351        170 TVMVVGVPNVGKSSIINALRS  190 (352)
Q Consensus       170 ~v~i~G~pnvGKStliN~l~~  190 (352)
                      .+.+.|.||+|||++++++..
T Consensus        48 ~l~l~GppGtGKT~l~~~l~~   68 (287)
T d1w5sa2          48 IYGSIGRVGIGKTTLAKFTVK   68 (287)
T ss_dssp             EEECTTCCSSSHHHHHHHHHH
T ss_pred             EEEeECCCCCCHHHHHHHHHH
Confidence            345579999999999999874

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=88.70  E-value=0.14  Score=41.85  Aligned_cols=25  Identities=28%  Similarity=0.402  Sum_probs=16.7

Q ss_pred             CcceEEEEeCCCCCChHHHHHHHhC
Q psy15351        166 VYNTTVMVVGVPNVGKSSIINALRS  190 (352)
Q Consensus       166 ~~~~~v~i~G~pnvGKStliN~l~~  190 (352)
                      ..+-.++++|.+||||||.+=.|..
T Consensus        10 k~p~vi~lvGptGvGKTTTiAKLA~   34 (211)
T d1j8yf2          10 KIPYVIMLVGVQGTGKATTAGKLAY   34 (211)
T ss_dssp             SSSEEEEEECSCCC----HHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHH
Confidence            3566789999999999999877763

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.49  E-value=0.13  Score=41.85  Aligned_cols=23  Identities=26%  Similarity=0.377  Sum_probs=19.5

Q ss_pred             ceEEEEeCCCCCChHHHHHHHhC
Q psy15351        168 NTTVMVVGVPNVGKSSIINALRS  190 (352)
Q Consensus       168 ~~~v~i~G~pnvGKStliN~l~~  190 (352)
                      +.-|+|.|..|+||||++..|..
T Consensus         3 G~lI~ieG~dGsGKsT~~~~L~~   25 (209)
T d1nn5a_           3 GALIVLEGVDRAGKSTQSRKLVE   25 (209)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHHH
T ss_pred             eeEEEEECCCCCCHHHHHHHHHH
Confidence            45688999999999998888763

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=88.14  E-value=0.11  Score=44.26  Aligned_cols=23  Identities=48%  Similarity=0.762  Sum_probs=20.0

Q ss_pred             eeEEEeccCCCCchhHHHHHhhh
Q psy15351        115 TTVMVVGVPNVGKSSIINALRSS  137 (352)
Q Consensus       115 ~~~~~~g~~nvgksslin~l~~~  137 (352)
                      ..+-++|.|||||||++|+|-..
T Consensus         3 ~~~GivG~Pn~GKSTlf~~lt~~   25 (278)
T d1jala1           3 FKCGIVGLPNVGKSTLFNALTKA   25 (278)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHT
T ss_pred             ceEEEECCCCCCHHHHHHHHHCC
Confidence            45779999999999999999754

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=87.90  E-value=0.17  Score=42.59  Aligned_cols=23  Identities=30%  Similarity=0.567  Sum_probs=20.4

Q ss_pred             ceEEEEeCCCCCChHHHHHHHhC
Q psy15351        168 NTTVMVVGVPNVGKSSIINALRS  190 (352)
Q Consensus       168 ~~~v~i~G~pnvGKStliN~l~~  190 (352)
                      +..+.+.|.||+|||++++++..
T Consensus        45 ~~~iLL~GppGtGKT~la~~iA~   67 (256)
T d1lv7a_          45 PKGVLMVGPPGTGKTLLAKAIAG   67 (256)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCeEEeeCCCCCCccHHHHHHHH
Confidence            45588999999999999999985

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=87.48  E-value=0.27  Score=39.89  Aligned_cols=21  Identities=24%  Similarity=0.702  Sum_probs=18.0

Q ss_pred             EEEEeCCCCCChHHHHHHHhC
Q psy15351        170 TVMVVGVPNVGKSSIINALRS  190 (352)
Q Consensus       170 ~v~i~G~pnvGKStliN~l~~  190 (352)
                      .+.+.|.||+||||+.+.+..
T Consensus        38 ~~ll~Gp~G~GKTt~a~~la~   58 (224)
T d1sxjb2          38 HMIISGMPGIGKTTSVHCLAH   58 (224)
T ss_dssp             CEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCchhhHHHHHH
Confidence            478999999999999887763

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=87.44  E-value=0.18  Score=40.56  Aligned_cols=22  Identities=18%  Similarity=0.418  Sum_probs=19.2

Q ss_pred             eEEEEeCCCCCChHHHHHHHhC
Q psy15351        169 TTVMVVGVPNVGKSSIINALRS  190 (352)
Q Consensus       169 ~~v~i~G~pnvGKStliN~l~~  190 (352)
                      +-|+|.|.||+||||+-..|..
T Consensus         4 piI~I~GppGSGKgT~ak~La~   25 (225)
T d1ckea_           4 PVITIDGPSGAGKGTLCKAMAE   25 (225)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3688899999999999988875

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=87.30  E-value=0.16  Score=43.90  Aligned_cols=24  Identities=25%  Similarity=0.487  Sum_probs=20.7

Q ss_pred             cceEEEEeCCCCCChHHHHHHHhC
Q psy15351        167 YNTTVMVVGVPNVGKSSIINALRS  190 (352)
Q Consensus       167 ~~~~v~i~G~pnvGKStliN~l~~  190 (352)
                      ++-.+.++|.||||||.|.++|..
T Consensus        48 ~~~~iLl~GPpG~GKT~lAkalA~   71 (309)
T d1ofha_          48 TPKNILMIGPTGVGKTEIARRLAK   71 (309)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHhh
Confidence            345688999999999999999975

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=86.78  E-value=0.21  Score=41.92  Aligned_cols=23  Identities=26%  Similarity=0.499  Sum_probs=20.4

Q ss_pred             ceEEEEeCCCCCChHHHHHHHhC
Q psy15351        168 NTTVMVVGVPNVGKSSIINALRS  190 (352)
Q Consensus       168 ~~~v~i~G~pnvGKStliN~l~~  190 (352)
                      +.-+.+.|.||+|||++++++.+
T Consensus        38 ~~giLL~GppGtGKT~l~~ala~   60 (258)
T d1e32a2          38 PRGILLYGPPGTGKTLIARAVAN   60 (258)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CceeEEecCCCCCchHHHHHHHH
Confidence            34589999999999999999986

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=86.76  E-value=0.52  Score=39.93  Aligned_cols=53  Identities=11%  Similarity=0.240  Sum_probs=35.5

Q ss_pred             HHHHHHhhccC-EEEEEEcCCCCCCCcC-HHHHHHHh-CCCCEEEEEEcccCCCcc
Q psy15351          6 KDIEKHLKNVD-IVIEVHDSRMPFTGRN-HLLQQSVQ-NIRPMVLVLNKRDLINSK   58 (352)
Q Consensus         6 ~~~~~~i~~aD-~vl~VvDar~p~~~~~-~~l~~~l~-~~k~~ilVlNK~Dl~~~~   58 (352)
                      ..+...+...+ ++++|.++..++.... ..+.+.+. ...+.++|+||+|+.++.
T Consensus       153 ~~~~~y~~~~~~~il~v~~a~~~~~~~~~~~~~~~~~~~~~r~i~Vltk~D~~~~~  208 (299)
T d2akab1         153 DMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVDPQGQRTIGVITKLDLMDEG  208 (299)
T ss_dssp             HHHHHHHTSTTEEEEEEEESSSCGGGCHHHHHHHHHCTTCSSEEEEEECGGGSCTT
T ss_pred             HHHHHHhcCccceeeeecccccchhhhHHHHHHHHhCcCCCceeeEEeccccccch
Confidence            33555666666 6777888876665433 23444444 467899999999999764

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=86.67  E-value=0.2  Score=40.38  Aligned_cols=25  Identities=20%  Similarity=0.191  Sum_probs=21.3

Q ss_pred             CcceEEEEeCCCCCChHHHHHHHhC
Q psy15351        166 VYNTTVMVVGVPNVGKSSIINALRS  190 (352)
Q Consensus       166 ~~~~~v~i~G~pnvGKStliN~l~~  190 (352)
                      ++.-.+.+.|.||.|||++.++|..
T Consensus        51 PKkn~i~~~GP~~TGKS~f~~sl~~   75 (205)
T d1tuea_          51 PKKNCLVFCGPANTGKSYFGMSFIH   75 (205)
T ss_dssp             TTCSEEEEESCGGGCHHHHHHHHHH
T ss_pred             CCceEEEEECCCCccHHHHHHHHHH
Confidence            4445788999999999999999875

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=86.62  E-value=0.14  Score=43.96  Aligned_cols=24  Identities=46%  Similarity=0.718  Sum_probs=21.1

Q ss_pred             ceeEEEeccCCCCchhHHHHHhhh
Q psy15351        114 NTTVMVVGVPNVGKSSIINALRSS  137 (352)
Q Consensus       114 ~~~~~~~g~~nvgksslin~l~~~  137 (352)
                      +..+.++|.||+||||+.|+|-..
T Consensus        10 ~~kiGivG~Pn~GKSTlfnalT~~   33 (296)
T d1ni3a1          10 NLKTGIVGMPNVGKSTFFRAITKS   33 (296)
T ss_dssp             CCEEEEEECSSSSHHHHHHHHHHS
T ss_pred             CcEEEEECCCCCCHHHHHHHHHCC
Confidence            556889999999999999999754

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.62  E-value=0.19  Score=41.20  Aligned_cols=23  Identities=26%  Similarity=0.382  Sum_probs=20.5

Q ss_pred             ceEEEEeCCCCCChHHHHHHHhC
Q psy15351        168 NTTVMVVGVPNVGKSSIINALRS  190 (352)
Q Consensus       168 ~~~v~i~G~pnvGKStliN~l~~  190 (352)
                      +..|+|-|.-||||||+++.|..
T Consensus         2 pk~IviEG~~GsGKST~~~~L~~   24 (241)
T d2ocpa1           2 PRRLSIEGNIAVGKSTFVKLLTK   24 (241)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCcHHHHHHHHHH
Confidence            45689999999999999999974

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=86.51  E-value=0.29  Score=40.04  Aligned_cols=22  Identities=14%  Similarity=0.442  Sum_probs=19.1

Q ss_pred             EEEEeCCCCCChHHHHHHHhCC
Q psy15351        170 TVMVVGVPNVGKSSIINALRSS  191 (352)
Q Consensus       170 ~v~i~G~pnvGKStliN~l~~~  191 (352)
                      -..+.|+.|+|||||+|.|...
T Consensus         5 v~iitGFLGaGKTTll~~lL~~   26 (222)
T d1nija1           5 VTLLTGFLGAGKTTLLRHILNE   26 (222)
T ss_dssp             EEEEEESSSSSCHHHHHHHHHS
T ss_pred             EEEEeeCCCCCHHHHHHHHHhc
Confidence            4678899999999999999864

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=86.50  E-value=0.22  Score=41.58  Aligned_cols=22  Identities=36%  Similarity=0.667  Sum_probs=20.0

Q ss_pred             eEEEEeCCCCCChHHHHHHHhC
Q psy15351        169 TTVMVVGVPNVGKSSIINALRS  190 (352)
Q Consensus       169 ~~v~i~G~pnvGKStliN~l~~  190 (352)
                      .-+.+.|.||+|||++.+++.+
T Consensus        43 ~giLl~GppGtGKT~la~aia~   64 (247)
T d1ixza_          43 KGVLLVGPPGVGKTHLARAVAG   64 (247)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEecCCCCChhHHHHHHHH
Confidence            4589999999999999999985

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=86.38  E-value=0.33  Score=39.33  Aligned_cols=21  Identities=38%  Similarity=0.578  Sum_probs=18.7

Q ss_pred             EEEEeCCCCCChHHHHHHHhC
Q psy15351        170 TVMVVGVPNVGKSSIINALRS  190 (352)
Q Consensus       170 ~v~i~G~pnvGKStliN~l~~  190 (352)
                      .+.+.|.||+||||++..+..
T Consensus        37 ~lLl~Gp~G~GKttl~~~la~   57 (227)
T d1sxjc2          37 HLLFYGPPGTGKTSTIVALAR   57 (227)
T ss_dssp             CEEEECSSSSSHHHHHHHHHH
T ss_pred             eEEEECCCCCChhHHHHHHHH
Confidence            478999999999999998874

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.54  E-value=0.16  Score=41.50  Aligned_cols=22  Identities=27%  Similarity=0.489  Sum_probs=20.0

Q ss_pred             eEEEEeCCCCCChHHHHHHHhC
Q psy15351        169 TTVMVVGVPNVGKSSIINALRS  190 (352)
Q Consensus       169 ~~v~i~G~pnvGKStliN~l~~  190 (352)
                      ..|+|-|..|+||||+++.|..
T Consensus         3 k~I~ieG~dGsGKST~~~~L~~   24 (241)
T d1p5zb_           3 KKISIEGNIAAGKSTFVNILKQ   24 (241)
T ss_dssp             EEEEEECSTTSSHHHHHTTTGG
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4699999999999999999975

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=85.25  E-value=0.26  Score=41.53  Aligned_cols=24  Identities=25%  Similarity=0.450  Sum_probs=21.0

Q ss_pred             cceEEEEeCCCCCChHHHHHHHhC
Q psy15351        167 YNTTVMVVGVPNVGKSSIINALRS  190 (352)
Q Consensus       167 ~~~~v~i~G~pnvGKStliN~l~~  190 (352)
                      .+..|.+.|.||+|||++.+++.+
T Consensus        40 ~~~giLL~Gp~GtGKT~l~~ala~   63 (265)
T d1r7ra3          40 PSKGVLFYGPPGCGKTLLAKAIAN   63 (265)
T ss_dssp             CCCEEEEBCCTTSSHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCcchhHHHHHHH
Confidence            345699999999999999999986

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=84.97  E-value=0.33  Score=39.32  Aligned_cols=21  Identities=24%  Similarity=0.359  Sum_probs=18.1

Q ss_pred             EEEEeCCCCCChHHHHHHHhC
Q psy15351        170 TVMVVGVPNVGKSSIINALRS  190 (352)
Q Consensus       170 ~v~i~G~pnvGKStliN~l~~  190 (352)
                      .++++|.+||||||.+-.|..
T Consensus        12 vi~lvGp~GvGKTTTiaKLA~   32 (207)
T d1ls1a2          12 LWFLVGLQGSGKTTTAAKLAL   32 (207)
T ss_dssp             EEEEECCTTTTHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            478899999999999987763

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=84.72  E-value=0.27  Score=39.91  Aligned_cols=24  Identities=21%  Similarity=0.385  Sum_probs=20.9

Q ss_pred             cceEEEEeCCCCCChHHHHHHHhC
Q psy15351        167 YNTTVMVVGVPNVGKSSIINALRS  190 (352)
Q Consensus       167 ~~~~v~i~G~pnvGKStliN~l~~  190 (352)
                      ++.-|++-|.-|+||||+++.|..
T Consensus         2 kGk~I~iEG~DGsGKST~~~~L~~   25 (214)
T d1tmka_           2 RGKLILIEGLDRTGKTTQCNILYK   25 (214)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHH
T ss_pred             CeEEEEEECCCCCcHHHHHHHHHH
Confidence            356699999999999999999974

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=84.70  E-value=0.34  Score=43.25  Aligned_cols=21  Identities=33%  Similarity=0.727  Sum_probs=18.2

Q ss_pred             EEEEeCCCCCChHHHHHHHhC
Q psy15351        170 TVMVVGVPNVGKSSIINALRS  190 (352)
Q Consensus       170 ~v~i~G~pnvGKStliN~l~~  190 (352)
                      ++.+||.||||||+++..|..
T Consensus        45 n~llvG~~GvGKtaiv~~la~   65 (387)
T d1qvra2          45 NPVLIGEPGVGKTAIVEGLAQ   65 (387)
T ss_dssp             CCEEEECTTSCHHHHHHHHHH
T ss_pred             CCeEECCCCCCHHHHHHHHHH
Confidence            368899999999999988874

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=84.49  E-value=0.078  Score=41.76  Aligned_cols=19  Identities=26%  Similarity=0.363  Sum_probs=16.7

Q ss_pred             EEEeCCCCCChHHHHHHHh
Q psy15351        171 VMVVGVPNVGKSSIINALR  189 (352)
Q Consensus       171 v~i~G~pnvGKStliN~l~  189 (352)
                      .+|+|..|+||||++.+|.
T Consensus        27 tvi~G~NGsGKStil~Ai~   45 (222)
T d1qhla_          27 TTLSGGNGAGKSTTMAAFV   45 (222)
T ss_dssp             HHHHSCCSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            3577999999999999986

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.65  E-value=0.32  Score=38.30  Aligned_cols=25  Identities=20%  Similarity=0.228  Sum_probs=20.5

Q ss_pred             CcceEEEEeCCCCCChHHHHHHHhC
Q psy15351        166 VYNTTVMVVGVPNVGKSSIINALRS  190 (352)
Q Consensus       166 ~~~~~v~i~G~pnvGKStliN~l~~  190 (352)
                      +++--+.+.|.||+|||+|...+..
T Consensus        21 ~~G~v~~i~G~~GsGKT~l~l~la~   45 (242)
T d1n0wa_          21 ETGSITEMFGEFRTGKTQICHTLAV   45 (242)
T ss_dssp             ETTSEEEEECCTTSSHHHHHHHHHH
T ss_pred             cCCEEEEEEeCCCCCHHHHHHHHHH
Confidence            3455788999999999999887763

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=83.54  E-value=1.5  Score=37.07  Aligned_cols=60  Identities=15%  Similarity=0.212  Sum_probs=38.5

Q ss_pred             HHHHHHhhccCE-EEEEEcCCCCCCCcC-HHHHHHHh-CCCCEEEEEEcccCCCccchHHHHHHH
Q psy15351          6 KDIEKHLKNVDI-VIEVHDSRMPFTGRN-HLLQQSVQ-NIRPMVLVLNKRDLINSKHESLIEEKV   67 (352)
Q Consensus         6 ~~~~~~i~~aD~-vl~VvDar~p~~~~~-~~l~~~l~-~~k~~ilVlNK~Dl~~~~~~~~~~~~~   67 (352)
                      ..+...+.+++. ++.|+++..++.... ..+.+.+. .+.+.++|+||+|..+...  .|...+
T Consensus       159 ~~~~~yi~~~~~~il~v~~~~~~~~~~~~~~~~~~~~~~~~r~i~Vitk~D~~~~~~--~~~~~l  221 (306)
T d1jwyb_         159 RMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVDPEGKRTIGVITKLDLMDKGT--DAMEVL  221 (306)
T ss_dssp             HHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHCSSCSSEEEEEECTTSSCSSC--CCHHHH
T ss_pred             HHHHHHHhCCCceeEEeecccccccccHHHHHHHHhCcCCCeEEEEEeccccccchh--HHHHHH
Confidence            445667888885 666667776654433 33444443 4578999999999987653  344444

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=83.53  E-value=0.34  Score=42.84  Aligned_cols=25  Identities=20%  Similarity=0.211  Sum_probs=21.4

Q ss_pred             CcceEEEEeCCCCCChHHHHHHHhC
Q psy15351        166 VYNTTVMVVGVPNVGKSSIINALRS  190 (352)
Q Consensus       166 ~~~~~v~i~G~pnvGKStliN~l~~  190 (352)
                      +..-.+.+.|.||+|||++.++|.+
T Consensus       152 ~~~~~~~~~g~~~~gk~~~~~~~~~  176 (362)
T d1svma_         152 PKKRYWLFKGPIDSGKTTLAAALLE  176 (362)
T ss_dssp             TTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCcCeEEEECCCCCCHHHHHHHHHH
Confidence            4445789999999999999999985

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=83.29  E-value=0.23  Score=42.22  Aligned_cols=19  Identities=42%  Similarity=0.704  Sum_probs=16.8

Q ss_pred             EEEeCCCCCChHHHHHHHh
Q psy15351        171 VMVVGVPNVGKSSIINALR  189 (352)
Q Consensus       171 v~i~G~pnvGKStliN~l~  189 (352)
                      -+++|..|+||||++.+|.
T Consensus        27 nvlvG~NgsGKS~iL~Ai~   45 (308)
T d1e69a_          27 TAIVGPNGSGKSNIIDAIK   45 (308)
T ss_dssp             EEEECCTTTCSTHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHH
Confidence            3688999999999999984

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=82.06  E-value=0.49  Score=39.90  Aligned_cols=24  Identities=25%  Similarity=0.209  Sum_probs=20.3

Q ss_pred             cceEEEEeCCCCCChHHHHHHHhC
Q psy15351        167 YNTTVMVVGVPNVGKSSIINALRS  190 (352)
Q Consensus       167 ~~~~v~i~G~pnvGKStliN~l~~  190 (352)
                      ....|+++|++|+|||||...+.+
T Consensus        43 ~~~~v~I~GmgGiGKTtLA~~v~~   66 (277)
T d2a5yb3          43 DSFFLFLHGRAGSGKSVIASQALS   66 (277)
T ss_dssp             SSEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHH
Confidence            345789999999999999988764

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=81.86  E-value=0.29  Score=41.82  Aligned_cols=22  Identities=18%  Similarity=0.398  Sum_probs=16.5

Q ss_pred             eEEEEeCCCCCChHHHHHHHhC
Q psy15351        169 TTVMVVGVPNVGKSSIINALRS  190 (352)
Q Consensus       169 ~~v~i~G~pnvGKStliN~l~~  190 (352)
                      .-|+|.|-+|+||||+.++|..
T Consensus         5 pIIgIaG~SGSGKTTva~~l~~   26 (288)
T d1a7ja_           5 PIISVTGSSGAGTSTVKHTFDQ   26 (288)
T ss_dssp             CEEEEESCC---CCTHHHHHHH
T ss_pred             CEEEEECCCCCcHHHHHHHHHH
Confidence            4699999999999999998863

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=81.65  E-value=0.37  Score=36.60  Aligned_cols=25  Identities=12%  Similarity=0.240  Sum_probs=21.2

Q ss_pred             eeEEEeccCCCCchhHHHHHhhhhc
Q psy15351        115 TTVMVVGVPNVGKSSIINALRSSHM  139 (352)
Q Consensus       115 ~~~~~~g~~nvgksslin~l~~~~~  139 (352)
                      ..+.++|.+++||+|+++.|.....
T Consensus         3 Pvi~itG~~GSGKTTL~~~L~~~l~   27 (170)
T d1np6a_           3 PLLAFAAWSGTGKTTLLKKLIPALC   27 (170)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHHH
Confidence            4678999999999999999986543

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=80.86  E-value=0.42  Score=41.62  Aligned_cols=23  Identities=13%  Similarity=0.247  Sum_probs=21.0

Q ss_pred             ceEEEEeCCCCCChHHHHHHHhC
Q psy15351        168 NTTVMVVGVPNVGKSSIINALRS  190 (352)
Q Consensus       168 ~~~v~i~G~pnvGKStliN~l~~  190 (352)
                      -++|.|-|.-|+||||+++.|..
T Consensus         5 ~lrI~IEG~iGsGKSTl~~~L~~   27 (331)
T d1osna_           5 VLRIYLDGAYGIGKTTAAEEFLH   27 (331)
T ss_dssp             EEEEEEEESSSSCTTHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999999985

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=80.44  E-value=0.28  Score=42.56  Aligned_cols=20  Identities=40%  Similarity=0.562  Sum_probs=18.3

Q ss_pred             EEEEeCCCCCChHHHHHHHh
Q psy15351        170 TVMVVGVPNVGKSSIINALR  189 (352)
Q Consensus       170 ~v~i~G~pnvGKStliN~l~  189 (352)
                      .+.++|.||+|||++..++.
T Consensus        30 ~vLl~G~pG~GKT~lar~~~   49 (333)
T d1g8pa_          30 GVLVFGDRGTGKSTAVRALA   49 (333)
T ss_dssp             CEEEECCGGGCTTHHHHHHH
T ss_pred             eEEEECCCCccHHHHHHHHH
Confidence            48999999999999999885

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=80.38  E-value=0.91  Score=36.82  Aligned_cols=61  Identities=18%  Similarity=0.163  Sum_probs=34.1

Q ss_pred             ccCEEEEEEcCCCCCCCc--CHHHHHHHhCCCCEEEEEEcccCCCccchHHHHHHHHhhcCCCCcEEE
Q psy15351         14 NVDIVIEVHDSRMPFTGR--NHLLQQSVQNIRPMVLVLNKRDLINSKHESLIEEKVRKEQSHISEVIF   79 (352)
Q Consensus        14 ~aD~vl~VvDar~p~~~~--~~~l~~~l~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~v~~   79 (352)
                      ..|.++.|+|+.......  .+.+.+.+. .- =++|+||+|++++.  +...+.+++.+.. .+++.
T Consensus       121 ~l~~vi~vVDa~~~~~~~~~~~~~~~Qi~-~A-D~ivlNK~Dl~~~~--~~~~~~l~~lNP~-a~Ii~  183 (222)
T d1nija1         121 LLDGVIALVDAVHADEQMNQFTIAQSQVG-YA-DRILLTKTDVAGEA--EKLHERLARINAR-APVYT  183 (222)
T ss_dssp             EEEEEEEEEETTTHHHHHHHCHHHHHHHH-TC-SEEEEECTTTCSCT--HHHHHHHHHHCSS-SCEEE
T ss_pred             cccchhhhhhhhhhhhhhhhhHHHHHHHH-hC-CcccccccccccHH--HHHHHHHHHHhCC-CeEEE
Confidence            457889999997542211  122223232 22 37899999998753  3455555554432 24554