Psyllid ID: psy15407

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600----
Protein Sequence
NGGTCVDGINDYTCKCEGDFVGKFCEIAPFVAMMYPQTSPCQHHDCKNGICFQPQGSNDYLCKCAPGYSGVEEFRTRYAGDCLIDAACPSGCSCDGTRVDCSQRGLKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDNYCPPKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIGGNPLYCDCGLAWLSEWVKRDYVEPGIARCTEPASMRDKLLLTAPASSFQCKEKVSDEILSKCNACYKSPCTNQGVCEPLPERQYQCRCTPGYHGQHCEFMIDACYGNPCRNSGTCKLLEEGRFNCECAPGYTGDRCEINIDDCLSHKCENNATCVDLIQAYECRCAPGFQGEFCQTKTPFCAGEYNPCRNGARCLDHFSHYTCECTPGFSGVNCTVNVDDCVNHMCQNGGTCVDGINDYTCKCEGDFVGKFCEIAPFVAMMYPQTSPCQHHDCKNGICFQPQGSNDYLCKCAPGYSGKESLLQQTTKA
Secondary Structure (PSIPRED)
cccEEEcccccEEEEccccccccccccccccccccccccccccccccccEEEcccccccEEEEcccccccccccccccccccccccccccccccccEEEEccccccccccccccccccEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEccccccccccccccccccccccccccccccccccccEEEccccccEEEcccccccccccccccccccccccccccccccccccEEEEcccccEEEEccccccccccccccccccccccccccccccccccccccEEEEcccccccccccccccccccccccccEEcccccccEEEEccccccccccccccccccccccccccEEEEcccccEEEEccccccccccccccccccccccccccEEEcccccEEEEccccccccccccccccccccccccccccEEEcccccEEEEccccccccccccccccccccccccccEEEEccccEEEccccccccccccccccccccccccccccccccccccEEcccccccEEEEcccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccEEEcccccEEEEcccccccccccccccccccccccccccccccccccEEEccccccEEEEcccccccccccccccccccccccccccccccccEEEEccccccccccccccccccccccccccEcEEEccccccccccccEEccccccccccccccccccccccEcccccccEEccccccccccccccccccccccccccccEEEccccccEEEEcccccccccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccEEccccccccccccEEEccccccEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEcccccccEEEEccccccccccccccccccccccccccEEEccccccEEEEccccccccccccccccccccccccccEEEcccccEEEEccccccccccccccccccccccccccccEEEcccccEEEEccccccccccccccccccccccccccEEEcccccEEEEcccccccccccccccccccccccccccccccccccEEEccccccEEEEcccccccccccccccccc
Coil and Loop (DISEMBL)
nggtcvdgindytckcegdfvgkfceiapfvammypqtspcqhhdckngicfqpqgsndylckcapgysgveeFRTRYagdclidaacpsgcscdgtrvdcsqrglkeipkdiplyttelilndneigkiksdglfgrlpnlikldlrrnqvtgiednafegendqgclgdnycppkctctvrvlfydgragECYIAVELFSSRIRVSYYVgnypvstmyrdlsnnqigflsnftfsplsKLSQLILSYNKLQCIDRDALAGLKSLRIISlhgndismipegafaDLHAITHLaiggnplycdcgLAWLSEWVkrdyvepgiarctepasmrdkllltapassfqckekVSDEILSKCnacykspctnqgvceplperqyqcrctpgyhgqhcefmidacygnpcrnsgtcklleegrfncecapgytgdrceiniddclshkcennatCVDLIQAYecrcapgfqgefcqtktpfcageynpcrngarcldhfshytcectpgfsgvnctvNVDDCVnhmcqnggtcvdgindytckcegdfvgkfceiapfvammypqtspcqhhdckngicfqpqgsndylckcapgysgkeslLQQTTKA
Flexible Loop (DISEMBL)
nggtcvdgindyTCKCEGDFVGKFCEIAPFVAMMYPQTSPCQHHDCKNGICFQPQGSNDYLCKCAPGYSGVEEFRTRYAGDCLIDAACPSGCSCDGTRVDCsqrglkeipkdiplyttELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDNYCPPKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIGGNPLYCDCGLAWLSEWVKRDYVEPGIARCTEPASMRDKLLLTAPASSFQCKEKVSDEILSKCNACYKSPCTNQGVCEPLPERQYQCRCTPGYHGQHCEFMIDACYGNPCRNSGTCKLLEEGRFNCECAPGYTGDRCEINIDDCLSHKCENNATCVDLIQAYECRCAPGFQGEFCQTKTPFCAGEYNPCRNGARCLDHFSHYTCECTPGFSGVNCTVNVDDCVNHMCQNGGTCVDGINDYTCKCEGDFVGKFCEIAPFVAMMYPQTSPCQHHDCKNGICFQPQGSNDYLCKCAPgysgkesllqqttka
Low Complexity Region (SEG)
NGGTCVDGINDYTCKCEGDFVGKFCEIAPFVAMMYPQTSPCQHHDCKNGICFQPQGSNDYLCKCAPGYSGVEEFRTRYAGDCLIDAACPSGCSCDGTRVDCSQRGLKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDNYCPPKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIGGNPLYCDCGLAWLSEWVKRDYVEPGIARCTEPASMRDKLLLTAPASSFQCKEKVSDEILSKCNACYKSPCTNQGVCEPLPERQYQCRCTPGYHGQHCEFMIDACYGNPCRNSGTCKLLEEGRFNCECAPGYTGDRCEINIDDCLSHKCENNATCVDLIQAYECRCAPGFQGEFCQTKTPFCAGEYNPCRNGARCLDHFSHYTCECTPGFSGvnctvnvddcvnHMCQNGGTCVDGINDYTCKCEGDFVGKFCEIAPFVAMMYPQTSPCQHHDCKNGICFQPQGSNDYLCKCAPGYSGKESLLQQTTKA
Disordered region (IsUnstruct)
***TCVDGINDYTCKCEGDFVGKFCEIAPFVAMMYPQTSPCQHHDCKNGICFQPQGSNDYLCKCAPGYSGVEEFRTRYAGDCLIDAACPSGCSCDGTRVDCSQRGLKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDNYCPPKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIGGNPLYCDCGLAWLSEWVKRDYVEPGIARCTEPASMRDKLLLTAPASSFQCKEKVSDEILSKCNACYKSPCTNQGVCEPLPERQYQCRCTPGYHGQHCEFMIDACYGNPCRNSGTCKLLEEGRFNCECAPGYTGDRCEINIDDCLSHKCENNATCVDLIQAYECRCAPGFQGEFCQTKTPFCAGEYNPCRNGARCLDHFSHYTCECTPGFSGVNCTVNVDDCVNHMCQNGGTCVDGINDYTCKCEGDFVGKFCEIAPFVAMMYPQTSPCQHHDCKNGICFQPQGSNDYLCKCAPGY*************
Disordered Region (DISOPRED)
NGGTCVDGINDYTCKCEGDFVGKFCEIAPFVAMMYPQTSPCQHHDCKNGICFQPQGSNDYLCKCAPGYSGVEEFRTRYAGDCLIDAACPSGCSCDGTRVDCSQRGLKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDNYCPPKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIGGNPLYCDCGLAWLSEWVKRDYVEPGIARCTEPASMRDKLLLTAPASSFQCKEKVSDEILSKCNACYKSPCTNQGVCEPLPERQYQCRCTPGYHGQHCEFMIDACYGNPCRNSGTCKLLEEGRFNCECAPGYTGDRCEINIDDCLSHKCENNATCVDLIQAYECRCAPGFQGEFCQTKTPFCAGEYNPCRNGARCLDHFSHYTCECTPGFSGVNCTVNVDDCVNHMCQNGGTCVDGINDYTCKCEGDFVGKFCEIAPFVAMMYPQTSPCQHHDCKNGICFQPQGSNDYLCKCAPGYSGKESLLQQTTK*
Disordered Region (DISEMBL)
NGGTCVDGINDYTCKCEGDFVGKFCEIAPFVAMMYPQTSPCQHHDCKNGICFQPQGSNDYLCKCAPGYSGVEEFRTRYAGDCLIDAACPSGCSCDGTRVDCSQRGLKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDNYCPPKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIGGNPLYCDCGLAWLSEWVKRDYVEPGIARCTEPASMRDKLLLTAPASSFQCKEKVSDEILSKCNACYKSPCTNQGVCEPLPERQYQCRCTPGYHGQHCEFMIDACYGNPCRNSGTCKLLEEGRFNCECAPGYTGDRCEINIDDCLSHKCENNATCVDLIQAYECRCAPGFQGEFCQTKTPFCAGEYNPCRNGARCLDHFSHYTCECTPGFSGVNCTVNVDDCVNHMCQNGGTCVDGINDYTCKCEGDFVGKFCEIAPFVAMMYPQTSPCQHHDCKNGICFQPQGSNDYLCKCAPGYSGK**********
Disordered Region (DISPRO)
*GGTCVDGINDYTCKCEGDFVGKFCEIAPFVAMMYPQTSPCQHHDCKNGICFQPQGSNDYLCKCAPGYSGVEEFRTRYAGDCLIDAACPSGCSCDGTRVDCSQRGLKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDNYCPPKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIGGNPLYCDCGLAWLSEWVKRDYVEPGIARCTEPASMRDKLLLTAPASSFQCKEKVSDEILSKCNACYKSPCTNQGVCEPLPERQYQCRCTPGYHGQHCEFMIDACYGNPCRNSGTCKLLEEGRFNCECAPGYTGDRCEINIDDCLSHKCENNATCVDLIQAYECRCAPGFQGEFCQTKTPFCAGEYNPCRNGARCLDHFSHYTCECTPGFSGVNCTVNVDDCVNHMCQNGGTCVDGINDYTCKCEGDFVGKFCEIAPFVAMMYPQTSPCQHHDCKNGICFQPQGSNDYLCKCAPGYSGKESLLQQ**K*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
NGGTCVDGINDYTCKCEGDFVGKFCEIAPFVAMMYPQTSPCQHHDCKNGICFQPQGSNDYLCKCAPGYSGVEEFRTRYAGDCLIDAACPSGCSCDGTRVDCSQRGLKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDNYCPPKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIGGNPLYCDCGLAWLSEWVKRDYVEPGIARCTEPASMRDKLLLTAPASSFQCKEKVSDEILSKCNACYKSPCTNQGVCEPLPERQYQCRCTPGYHGQHCEFMIDACYGNPCRNSGTCKLLEEGRFNCECAPGYTGDRCEINIDDCLSHKCENNATCVDLIQAYECRCAPGFQGEFCQTKTPFCAGEYNPCRNGARCLDHFSHYTCECTPGFSGVNCTVNVDDCVNHMCQNGGTCVDGINDYTCKCEGDFVGKFCEIAPFVAMMYPQTSPCQHHDCKNGICFQPQGSNDYLCKCAPGYSGKESLLQQTTKA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	604	2.2.26 [Sep-21-2011]
P24014	1504	Protein slit OS=Drosophil	yes	N/A	0.740	0.297	0.603	1e-168
G5EFX6	1410	Slit homolog 1 protein OS	yes	N/A	0.688	0.295	0.466	1e-117
O94813	1529	Slit homolog 2 protein OS	yes	N/A	0.706	0.279	0.46	1e-108
O88280	1523	Slit homolog 3 protein OS	yes	N/A	0.723	0.286	0.456	1e-108
Q9WVB4	1523	Slit homolog 3 protein OS	yes	N/A	0.723	0.286	0.460	1e-107
Q9R1B9	1521	Slit homolog 2 protein OS	no	N/A	0.706	0.280	0.457	1e-107
O75094	1523	Slit homolog 3 protein OS	no	N/A	0.723	0.286	0.447	1e-105
O75093	1534	Slit homolog 1 protein OS	no	N/A	0.779	0.307	0.405	5e-94
O88279	1531	Slit homolog 1 protein OS	no	N/A	0.718	0.283	0.435	1e-93
Q80TR4	1531	Slit homolog 1 protein OS	no	N/A	0.774	0.305	0.405	1e-92

>sp|P24014|SLIT_DROME Protein slit OS=Drosophila melanogaster GN=sli PE=1 SV=2

 Score =  593 bits (1530), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 279/462 (60%), Positives = 353/462 (76%), Gaps = 15/462 (3%)

Query: 147  LRRNQVTGIEDNAFE--GENDQGCLGDNYCPPKCTCTVRVL------FYDGRAGECYIAV 198
            +R  Q+  +  + F+   EN +GCLGD YCPP CTCT  V+        +   G      
Sbjct: 710  VRDVQIKDLPHSEFKCSSENSEGCLGDGYCPPSCTCTGTVVRCSRNQLKEIPRGIPAETS 769

Query: 199  ELF--SSRIRVSYYVGNYPVSTMYR-DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCI 255
            EL+  S+ I   +Y     + ++ R DLSNNQI  LSN+TF+ L+KLS LI+SYNKLQC+
Sbjct: 770  ELYLESNEIEQIHYERIRHLRSLTRLDLSNNQITILSNYTFANLTKLSTLIISYNKLQCL 829

Query: 256  DRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIGGNPLYCDCGLAWLSEWVKR 315
             R AL+GL +LR++SLHGN ISM+PEG+F DL ++TH+A+G NPLYCDCGL W S+W+K 
Sbjct: 830  QRHALSGLNNLRVLSLHGNRISMLPEGSFEDLKSLTHIALGSNPLYCDCGLKWFSDWIKL 889

Query: 316  DYVEPGIARCTEPASMRDKLLLTAPASSFQCKEKVSDEILSKCNACYKSPCTNQGVCEPL 375
            DYVEPGIARC EP  M+DKL+L+ P+SSF C+ +V ++IL+KCNAC++ PC NQ  C  L
Sbjct: 890  DYVEPGIARCAEPEQMKDKLILSTPSSSFVCRGRVRNDILAKCNACFEQPCQNQAQCVAL 949

Query: 376  PERQYQCRCTPGYHGQHCEFMIDACYGNPCRNSGTCKLLEEGRFNCECAPGYTGDRCEIN 435
            P+R+YQC C PGYHG+HCEFMIDACYGNPCRN+ TC +LEEGRF+C+CAPGYTG RCE N
Sbjct: 950  PQREYQCLCQPGYHGKHCEFMIDACYGNPCRNNATCTVLEEGRFSCQCAPGYTGARCETN 1009

Query: 436  IDDCLSH-KCENNATCVDLIQAYECRCAPGFQGEFCQTKTPFCAGEYNPCRNGARCLDHF 494
            IDDCL   KC+NNATC+D +++Y+C C PGF GEFC TK  FC+ E+NPC NGA+C+DHF
Sbjct: 1010 IDDCLGEIKCQNNATCIDGVESYKCECQPGFSGEFCDTKIQFCSPEFNPCANGAKCMDHF 1069

Query: 495  SHYTCECTPGFSGVNCTVNVDDCVNHMCQNGGTCVDGINDYTCKCEGDFVGKFCEIAPFV 554
            +HY+C+C  GF G NCT N+DDC NHMCQNGGTCVDGINDY C+C  D+ GK+CE    +
Sbjct: 1070 THYSCDCQAGFHGTNCTDNIDDCQNHMCQNGGTCVDGINDYQCRCPDDYTGKYCEGHNMI 1129

Query: 555  AMMYPQTSPCQHHDCKNGICFQP--QGSNDYLCKCAPGYSGK 594
            +MMYPQTSPCQ+H+CK+G+CFQP  QGS DYLC+C PGY+GK
Sbjct: 1130 SMMYPQTSPCQNHECKHGVCFQPNAQGS-DYLCRCHPGYTGK 1170

A short-range repellent, controlling axon crossing of the midline and a long-range chemorepellent, controlling mesoderm migration and patterning away from the midline. May interact with extracellular matrix molecules. Repulsive ligand for the guidance receptor roundabout (robo) and prevents inappropriate midline crossing by Robo-expressing axons.
Drosophila melanogaster (taxid: 7227)

>sp|G5EFX6|SLIT1_CAEEL Slit homolog 1 protein OS=Caenorhabditis elegans GN=slt-1 PE=3 SV=1

 Score =  421 bits (1083), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 204/437 (46%), Positives = 274/437 (62%), Gaps = 21/437 (4%)

Query: 172  NYCPPKCTCTVRVLFYDGRAGECYIAVELFSSRIRV--------SYYVGNYPVSTMYR-- 221
            N CPPKC+C  RV+    +       +  F SRI          + Y+   P   + R  
Sbjct: 675  NLCPPKCSCLDRVVRCSNKN------LTSFPSRIPFDTTELYLDANYINEIPAHDLNRLY 728

Query: 222  -----DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDI 276
                 DLS+N++  L N TFS L++LS LI+SYNKL+C+   A  GL +LRI+SLHGNDI
Sbjct: 729  SLTKLDLSHNRLISLENNTFSNLTRLSTLIISYNKLRCLQPLAFNGLNALRILSLHGNDI 788

Query: 277  SMIPEGAFADLHAITHLAIGGNPLYCDCGLAWLSEWVKRDYVEPGIARCTEPASMRDKLL 336
            S +P+ AF++L +ITH+A+G N LYCDC +AW S+W+K  ++E GIARC  P ++ ++LL
Sbjct: 789  SFLPQSAFSNLTSITHIAVGSNSLYCDCNMAWFSKWIKSKFIEAGIARCEYPNTVSNQLL 848

Query: 337  LTAPASSFQCKEKVSDEILSKCNACYKSPCTNQGVCEPLPERQYQCRCTPGYHGQHCEFM 396
            LTA    F C  KV  ++ +KC+ C  SPC N  +CE    R+Y C CTPG++G HCE  
Sbjct: 849  LTAQPYQFTCDSKVPTKLATKCDLCLNSPCKNNAICETTSSRKYTCNCTPGFYGVHCENQ 908

Query: 397  IDACYGNPCRNSGTCKLLEEGRFNCECAPGYTGDRCEINIDDCLSHKCENNATCVDLIQA 456
            IDACYG+PC N+ TCK+ + GRFNC C  G+ GD CE NIDDC++ KCEN   CVDLI +
Sbjct: 909  IDACYGSPCLNNATCKVAQAGRFNCYCNKGFEGDYCEKNIDDCVNSKCENGGKCVDLINS 968

Query: 457  YECRCAPGFQGEFCQTKTPFCAGEYNPCRNGARCLDHFSHYTCECTPGFSGVNCTVNVDD 516
            Y C C   ++G+ C+ K  +C  + NPC N  +C+     Y+C C+PGF+G NC  N+DD
Sbjct: 969  YRCDCPMEYEGKHCEDKLEYCTKKLNPCENNGKCIPINGSYSCMCSPGFTGNNCETNIDD 1028

Query: 517  CVNHMCQNGGTCVDGINDYTCKCEGDFVGKFCEIAPFVAMMYPQTSPCQHHDCKNGICFQ 576
            C N  CQNGG+CVDGI  Y C C   + G++CEI P + M Y +T  CQ   C  G C  
Sbjct: 1029 CKNVECQNGGSCVDGILSYDCLCRPGYAGQYCEIPPMMDMEYQKTDACQQSACGQGECVA 1088

Query: 577  PQGSNDYLCKCAPGYSG 593
             Q S+D+ CKC  G+SG
Sbjct: 1089 SQNSSDFTCKCHEGFSG 1105

Functions as a ligand for sax-3 receptor during larval development. Acts via the sax-3/Robo receptor to direct ventral axon guidance and guidance at the midline during embryonic development.

Caenorhabditis elegans (taxid: 6239)

>sp|O94813|SLIT2_HUMAN Slit homolog 2 protein OS=Homo sapiens GN=SLIT2 PE=1 SV=1

 Score =  394 bits (1011), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 207/450 (46%), Positives = 277/450 (61%), Gaps = 23/450 (5%)

Query: 161  EGENDQGCLGDNYCPPKCTCTVRVLFYDGR------------AGECYIAVELFSSRIRVS 208
            +G +D  C   + CP +CTC   V+    +              E Y+    F+    V 
Sbjct: 714  DGNDDNSCSPLSRCPTECTCLDTVVRCSNKGLKVLPKGIPRDVTELYLDGNQFT---LVP 770

Query: 209  YYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRI 268
              + NY   T+  DLSNN+I  LSN +FS +++L  LILSYN+L+CI      GLKSLR+
Sbjct: 771  KELSNYKHLTLI-DLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRL 829

Query: 269  ISLHGNDISMIPEGAFADLHAITHLAIGGNPLYCDCGLAWLSEWVKRDYVEPGIARCTEP 328
            +SLHGNDIS++PEGAF DL A++HLAIG NPLYCDC + WLS+WVK +Y EPGIARC  P
Sbjct: 830  LSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCDCNMQWLSDWVKSEYKEPGIARCAGP 889

Query: 329  ASMRDKLLLTAPASSFQCKEKVSDEILSKCNACYKSPCTNQGVCEPLPERQYQCRCTPGY 388
              M DKLLLT P+  F C+  V   IL+KCN C  +PC N G C   P   Y+C C  G+
Sbjct: 890  GEMADKLLLTTPSKKFTCQGPVDVNILAKCNPCLSNPCKNDGTCNSDPVDFYRCTCPYGF 949

Query: 389  HGQHCEFMIDACYGNPCRNSGTCKLL--EEGRFNCECAPGYTGDRCEINIDDCLSHKCEN 446
             GQ C+  I AC  NPC++ GTC L   EE  F C CA G+ G+ CE+N+DDC  + CEN
Sbjct: 950  KGQDCDVPIHACISNPCKHGGTCHLKEGEEDGFWCICADGFEGENCEVNVDDCEDNDCEN 1009

Query: 447  NATCVDLIQAYECRCAPGFQGEFCQTKTPFCAGEYNPCRNGARCLDHFSHYTCECTPGFS 506
            N+TCVD I  Y C C P + GE C+ K  FCA + NPC++ ++C+     + C+CTPG+ 
Sbjct: 1010 NSTCVDGINNYTCLCPPEYTGELCEEKLDFCAQDLNPCQHDSKCILTPKGFKCDCTPGYV 1069

Query: 507  GVNCTVNVDDCVNHMCQNGGTCVDGINDYTCKCEGDFVGKFCEIAPFVAMMYPQTSPCQH 566
            G +C ++ DDC ++ C+NG  C D +N YTC C   + G FCE +P   M+ P+TSPC +
Sbjct: 1070 GEHCDIDFDDCQDNKCKNGAHCTDAVNGYTCICPEGYSGLFCEFSP--PMVLPRTSPCDN 1127

Query: 567  HDCKNGI-CFQPQGSNDYLCKCAPGYSGKE 595
             DC+NG  C      N+ +C+C PGY G++
Sbjct: 1128 FDCQNGAQCI--VRINEPICQCLPGYQGEK 1155

Thought to act as molecular guidance cue in cellular migration, and function appears to be mediated by interaction with roundabout homolog receptors. During neural development involved in axonal navigation at the ventral midline of the neural tube and projection of axons to different regions. SLIT1 and SLIT2 seem to be essential for midline guidance in the forebrain by acting as repulsive signal preventing inappropriate midline crossing by axons projecting from the olfactory bulb. In spinal chord development may play a role in guiding commissural axons once they reached the floor plate by modulating the response to netrin. In vitro, silences the attractive effect of NTN1 but not its growth-stimulatory effect and silencing requires the formation of a ROBO1-DCC complex. May be implicated in spinal chord midline post-crossing axon repulsion. In vitro, only commissural axons that crossed the midline responded to SLIT2. In the developing visual system appears to function as repellent for retinal ganglion axons by providing a repulsion that directs these axons along their appropriate paths prior to, and after passage through, the optic chiasm. In vitro, collapses and repels retinal ganglion cell growth cones. Seems to play a role in branching and arborization of CNS sensory axons, and in neuronal cell migration. In vitro, Slit homolog 2 protein N-product, but not Slit homolog 2 protein C-product, repels olfactory bulb (OB) but not dorsal root ganglia (DRG) axons, induces OB growth cones collapse and induces branching of DRG axons. Seems to be involved in regulating leukocyte migration.

Homo sapiens (taxid: 9606)

>sp|O88280|SLIT3_RAT Slit homolog 3 protein OS=Rattus norvegicus GN=Slit3 PE=2 SV=1

 Score =  391 bits (1005), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 208/456 (45%), Positives = 270/456 (59%), Gaps = 19/456 (4%)

Query: 151  QVTGIEDNAFEGENDQGCLGDNYCPPKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYY 210
            Q   I+D   EG  +  C     CP +CTC   V+    R    +   +     +   Y 
Sbjct: 702  QDVAIQDFTCEGNEENSCQLSPRCPEQCTCVETVVRCSNRG--LHTLPKGMPKDVTELYL 759

Query: 211  VGNYPVS-----TMYR-----DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDAL 260
             GN+  +     + +R     DLSNN I  L+N TFS +S LS LILSYN+L+CI   A 
Sbjct: 760  EGNHLTAVPKELSTFRQLTLIDLSNNSISMLTNHTFSNMSHLSTLILSYNRLRCIPVHAF 819

Query: 261  AGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIGGNPLYCDCGLAWLSEWVKRDYVEP 320
             GL+SLR+++LHGNDIS +PEG+F DL +++HLA+G NPL+CDC L WLSEW+K  Y EP
Sbjct: 820  NGLRSLRVLTLHGNDISSVPEGSFNDLTSLSHLALGINPLHCDCSLRWLSEWIKAGYKEP 879

Query: 321  GIARCTEPASMRDKLLLTAPASSFQCKEKVSDEILSKCNACYKSPCTNQGVCEPLPERQY 380
            GIARC+ P SM D+LLLT P   FQCK  V   I++KCNAC  SPC N G C   P  QY
Sbjct: 880  GIARCSSPESMADRLLLTTPTHRFQCKGPVDINIVAKCNACLSSPCKNNGTCSQDPVEQY 939

Query: 381  QCRCTPGYHGQHCEFMIDACYGNPCRNSGTCKLLEEGR--FNCECAPGYTGDRCEINIDD 438
            +C C   Y G+ C   I+ C  NPC++ GTC L E  R  F+C C  G+ G RCEIN DD
Sbjct: 940  RCTCPYSYKGKDCTVPINTCVQNPCQHGGTCHLSESHRDGFSCSCPLGFEGQRCEINPDD 999

Query: 439  CLSHKCENNATCVDLIQAYECRCAPGFQGEFCQTKTPFCAGEYNPCRNGARCLDHFSHYT 498
            C  + CEN+ATCVD I  Y C C P + GE C     +C  E N C++ A+C+     + 
Sbjct: 1000 CEDNDCENSATCVDGINNYACVCPPNYTGELCDEVIDYCVPEMNLCQHEAKCISLDKGFR 1059

Query: 499  CECTPGFSGVNCTVNVDDCVNHMCQNGGTCVDGINDYTCKCEGDFVGKFCEIAPFVAMMY 558
            CEC PG+SG  C  + DDCV H C++G  CVD +N YTC C   F G FCE  P + ++ 
Sbjct: 1060 CECVPGYSGKLCETDNDDCVAHKCRHGAQCVDAVNGYTCICPQGFSGLFCEHPPPMVLL- 1118

Query: 559  PQTSPCQHHDCKNGI-CFQPQGSNDYLCKCAPGYSG 593
             QTSPC  ++C+NG  C   Q   +  C+C PG++G
Sbjct: 1119 -QTSPCDQYECQNGAQCIVVQ--QEPTCRCPPGFAG 1151

May act as molecular guidance cue in cellular migration, and function may be mediated by interaction with roundabout homolog receptors.

Rattus norvegicus (taxid: 10116)

>sp|Q9WVB4|SLIT3_MOUSE Slit homolog 3 protein OS=Mus musculus GN=Slit3 PE=2 SV=2

 Score =  391 bits (1004), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 210/456 (46%), Positives = 268/456 (58%), Gaps = 19/456 (4%)

Query: 151  QVTGIEDNAFEGENDQGCLGDNYCPPKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYY 210
            Q   I+D   +G  +  C     CP +CTC   V+    R    +   +     +   Y 
Sbjct: 702  QDVAIQDFTCDGNEESSCQLSPRCPEQCTCVETVVRCSNRG--LHALPKGMPKDVTELYL 759

Query: 211  VGNYPVS-----TMYR-----DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDAL 260
             GN+  +     + +R     DLSNN I  L+N TFS +S LS LILSYN+L+CI   A 
Sbjct: 760  EGNHLTAVPKELSAFRQLTLIDLSNNSISMLTNHTFSNMSHLSTLILSYNRLRCIPVHAF 819

Query: 261  AGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIGGNPLYCDCGLAWLSEWVKRDYVEP 320
             GL+SLR+++LHGNDIS +PEG+F DL +++HLA+G NPL+CDC L WLSEWVK  Y EP
Sbjct: 820  NGLRSLRVLTLHGNDISSVPEGSFNDLTSLSHLALGTNPLHCDCSLRWLSEWVKAGYKEP 879

Query: 321  GIARCTEPASMRDKLLLTAPASSFQCKEKVSDEILSKCNACYKSPCTNQGVCEPLPERQY 380
            GIARC+ P SM D+LLLT P   FQCK  V   I++KCNAC  SPC N G C   P  QY
Sbjct: 880  GIARCSSPESMADRLLLTTPTHRFQCKGPVDINIVAKCNACLSSPCKNNGTCSQDPVEQY 939

Query: 381  QCRCTPGYHGQHCEFMIDACYGNPCRNSGTCKLLEEGR--FNCECAPGYTGDRCEINIDD 438
            +C C   Y G+ C   I+ C  NPC + GTC L E  R  F+C C  G+ G RCEIN DD
Sbjct: 940  RCTCPYSYKGKDCTVPINTCVQNPCEHGGTCHLSENLRDGFSCSCPLGFEGQRCEINPDD 999

Query: 439  CLSHKCENNATCVDLIQAYECRCAPGFQGEFCQTKTPFCAGEYNPCRNGARCLDHFSHYT 498
            C  + CEN+ATCVD I  Y C C P + GE C     +C  E N C++ A+C+     + 
Sbjct: 1000 CEDNDCENSATCVDGINNYACLCPPNYTGELCDEVIDYCVPEMNLCQHEAKCISLDKGFR 1059

Query: 499  CECTPGFSGVNCTVNVDDCVNHMCQNGGTCVDGINDYTCKCEGDFVGKFCEIAPFVAMMY 558
            CEC PG+SG  C  N DDCV H C++G  CVD +N YTC C   F G FCE  P   M+ 
Sbjct: 1060 CECVPGYSGKLCETNNDDCVAHKCRHGAQCVDEVNGYTCICPQGFSGLFCEHPP--PMVL 1117

Query: 559  PQTSPCQHHDCKNGI-CFQPQGSNDYLCKCAPGYSG 593
             QTSPC  ++C+NG  C   Q   +  C+C PG++G
Sbjct: 1118 LQTSPCDQYECQNGAQCIVVQ--QEPTCRCPPGFAG 1151

May act as molecular guidance cue in cellular migration, and function may be mediated by interaction with roundabout homolog receptors.

Mus musculus (taxid: 10090)

>sp|Q9R1B9|SLIT2_MOUSE Slit homolog 2 protein OS=Mus musculus GN=Slit2 PE=2 SV=2

 Score =  390 bits (1002), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 206/450 (45%), Positives = 275/450 (61%), Gaps = 23/450 (5%)

Query: 161  EGENDQGCLGDNYCPPKCTCTVRVLFYDGR------------AGECYIAVELFSSRIRVS 208
            +G +D  C   + CP +CTC   V+    +              E Y+    F+    V 
Sbjct: 706  DGNDDNSCSPLSRCPSECTCLDTVVRCSNKGLKVLPKGIPKDVTELYLDGNQFT---LVP 762

Query: 209  YYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRI 268
              + NY   T+  DLSNN+I  LSN +FS +++L  LILSYN+L+CI      GLKSLR+
Sbjct: 763  KELSNYKHLTLI-DLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRL 821

Query: 269  ISLHGNDISMIPEGAFADLHAITHLAIGGNPLYCDCGLAWLSEWVKRDYVEPGIARCTEP 328
            +SLHGNDIS++PEGAF DL A++HLAIG NPLYCDC + WLS+WVK +Y EPGIARC  P
Sbjct: 822  LSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCDCNMQWLSDWVKSEYKEPGIARCAGP 881

Query: 329  ASMRDKLLLTAPASSFQCKEKVSDEILSKCNACYKSPCTNQGVCEPLPERQYQCRCTPGY 388
              M DKLLLT P+  F C+  V   I +KCN C  +PC N G C   P   Y+C C  G+
Sbjct: 882  GEMADKLLLTTPSKKFTCQGPVDITIQAKCNPCLSNPCKNDGTCNNDPVDFYRCTCPYGF 941

Query: 389  HGQHCEFMIDACYGNPCRNSGTCKLL--EEGRFNCECAPGYTGDRCEINIDDCLSHKCEN 446
             GQ C+  I AC  NPC++ GTC L   E   F C CA G+ G+ CE+NIDDC  + CEN
Sbjct: 942  KGQDCDVPIHACISNPCKHGGTCHLKEGENAGFWCTCADGFEGENCEVNIDDCEDNDCEN 1001

Query: 447  NATCVDLIQAYECRCAPGFQGEFCQTKTPFCAGEYNPCRNGARCLDHFSHYTCECTPGFS 506
            N+TCVD I  Y C C P + GE C+ K  FCA + NPC++ ++C+     + C+CTPG+ 
Sbjct: 1002 NSTCVDGINNYTCLCPPEYTGELCEEKLDFCAQDLNPCQHDSKCILTPKGFKCDCTPGYI 1061

Query: 507  GVNCTVNVDDCVNHMCQNGGTCVDGINDYTCKCEGDFVGKFCEIAPFVAMMYPQTSPCQH 566
            G +C ++ DDC ++ C+NG  C D +N YTC C   + G FCE +P   M+ P+TSPC +
Sbjct: 1062 GEHCDIDFDDCQDNKCKNGAHCTDAVNGYTCVCPEGYSGLFCEFSP--PMVLPRTSPCDN 1119

Query: 567  HDCKNGI-CFQPQGSNDYLCKCAPGYSGKE 595
             DC+NG  C      N+ +C+C PGY G++
Sbjct: 1120 FDCQNGAQCI--IRINEPICQCLPGYLGEK 1147

Thought to act as molecular guidance cue in cellular migration, and function appears to be mediated by interaction with roundabout homolog receptors. During neural development involved in axonal navigation at the ventral midline of the neural tube and projection of axons to different regions. SLIT1 and SLIT2 seem to be essential for midline guidance in the forebrain by acting as repulsive signal preventing inappropriate midline crossing by axons projecting from the olfactory bulb. In spinal chord development, may play a role in guiding commissural axons once they reached the floor plate by modulating the response to netrin. In vitro, silences the attractive effect of NTN1 but not its growth-stimulatory effect and silencing requires the formation of a ROBO1-DCC complex. May be implicated in spinal chord midline post-crossing axon repulsion. In vitro, only commissural axons that crossed the midline responded to SLIT2. In the developing visual system, appears to function as repellent for retinal ganglion axons by providing a repulsion that directs these axons along their appropriate paths prior to, and after passage through, the optic chiasm. In vitro, collapses and repels retinal ganglion cell growth cones. Seems to play a role in branching and arborization of CNS sensory axons, and in neuronal cell migration. In vitro, Slit homolog 2 protein N-product, but not Slit homolog 2 protein C-product, repels olfactory bulb (OB) but not dorsal root ganglia (DRG) axons, induces OB growth cones collapse and induces branching of DRG axons. Seems to be involved in regulating leukocyte migration.

Mus musculus (taxid: 10090)

>sp|O75094|SLIT3_HUMAN Slit homolog 3 protein OS=Homo sapiens GN=SLIT3 PE=2 SV=3

 Score =  382 bits (980), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 204/456 (44%), Positives = 264/456 (57%), Gaps = 19/456 (4%)

Query: 151  QVTGIEDNAFEGENDQGCLGDNYCPPKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYY 210
            Q   I+D   +G  +  C     CP +CTC   V+    +              +   Y 
Sbjct: 702  QDVAIQDFTCDGNEESSCQLSPRCPEQCTCMETVVRCSNKGLRAL--PRGMPKDVTELYL 759

Query: 211  VGNYPVST----------MYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDAL 260
             GN+  +              DLSNN I  L+N+TFS +S LS LILSYN+L+CI   A 
Sbjct: 760  EGNHLTAVPRELSALRHLTLIDLSNNSISMLTNYTFSNMSHLSTLILSYNRLRCIPVHAF 819

Query: 261  AGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIGGNPLYCDCGLAWLSEWVKRDYVEP 320
             GL+SLR+++LHGNDIS +PEG+F DL +++HLA+G NPL+CDC L WLSEWVK  Y EP
Sbjct: 820  NGLRSLRVLTLHGNDISSVPEGSFNDLTSLSHLALGTNPLHCDCSLRWLSEWVKAGYKEP 879

Query: 321  GIARCTEPASMRDKLLLTAPASSFQCKEKVSDEILSKCNACYKSPCTNQGVCEPLPERQY 380
            GIARC+ P  M D+LLLT P   FQCK  V   I++KCNAC  SPC N G C   P   Y
Sbjct: 880  GIARCSSPEPMADRLLLTTPTHRFQCKGPVDINIVAKCNACLSSPCKNNGTCTQDPVELY 939

Query: 381  QCRCTPGYHGQHCEFMIDACYGNPCRNSGTCKLLEEGR--FNCECAPGYTGDRCEINIDD 438
            +C C   Y G+ C   I+ C  NPC++ GTC L +  +  F+C C  G+ G RCEIN DD
Sbjct: 940  RCACPYSYKGKDCTVPINTCIQNPCQHGGTCHLSDSHKDGFSCSCPLGFEGQRCEINPDD 999

Query: 439  CLSHKCENNATCVDLIQAYECRCAPGFQGEFCQTKTPFCAGEYNPCRNGARCLDHFSHYT 498
            C  + CENNATCVD I  Y C C P + GE C      C  E N C++ A+C+     ++
Sbjct: 1000 CEDNDCENNATCVDGINNYVCICPPNYTGELCDEVIDHCVPELNLCQHEAKCIPLDKGFS 1059

Query: 499  CECTPGFSGVNCTVNVDDCVNHMCQNGGTCVDGINDYTCKCEGDFVGKFCEIAPFVAMMY 558
            CEC PG+SG  C  + DDCV H C++G  CVD IN YTC C   F G FCE  P + ++ 
Sbjct: 1060 CECVPGYSGKLCETDNDDCVAHKCRHGAQCVDTINGYTCTCPQGFSGPFCEHPPPMVLL- 1118

Query: 559  PQTSPCQHHDCKNGI-CFQPQGSNDYLCKCAPGYSG 593
             QTSPC  ++C+NG  C   Q   +  C+C PG++G
Sbjct: 1119 -QTSPCDQYECQNGAQCIVVQ--QEPTCRCPPGFAG 1151

May act as molecular guidance cue in cellular migration, and function may be mediated by interaction with roundabout homolog receptors.

Homo sapiens (taxid: 9606)

>sp|O75093|SLIT1_HUMAN Slit homolog 1 protein OS=Homo sapiens GN=SLIT1 PE=2 SV=4

 Score =  345 bits (885), Expect = 5e-94,   Method: Compositional matrix adjust.
 Identities = 213/525 (40%), Positives = 283/525 (53%), Gaps = 54/525 (10%)

Query: 120  LILNDNEIGKIKSDGLFGRLPNLIKLDL-------------------RRNQVTG------ 154
            L L DN+I  + S G F  L +L  L+L                   +R  VTG      
Sbjct: 642  LSLYDNQITTV-SPGAFDTLQSLSTLNLLANPFNCNCQLAWLGGWLRKRKIVTGNPRCQN 700

Query: 155  --------IEDNAF------EGENDQGCLGDNYCPPKCTC---TVRVLFYDGRA---GEC 194
                    ++D AF      EG+ + GCL    CP +C C    VR      RA   G  
Sbjct: 701  PDFLRQIPLQDVAFPDFRCEEGQEEGGCLPRPQCPQECACLDTVVRCSNKHLRALPKGIP 760

Query: 195  YIAVELFSSRIRVSYYVGNYPVSTMYR--DLSNNQIGFLSNFTFSPLSKLSQLILSYNKL 252
                EL+    + +   G        +  DLSNN+I  LSN +F+ +S+L+ LILSYN L
Sbjct: 761  KNVTELYLDGNQFTLVPGQLSTFKYLQLVDLSNNKISSLSNSSFTNMSQLTTLILSYNAL 820

Query: 253  QCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIGGNPLYCDCGLAWLSEW 312
            QCI   A  GL+SLR++SLHGNDIS + EG FAD+ +++HLAIG NPLYCDC L WLS W
Sbjct: 821  QCIPPLAFQGLRSLRLLSLHGNDISTLQEGIFADVTSLSHLAIGANPLYCDCHLRWLSSW 880

Query: 313  VKRDYVEPGIARCTEPASMRDKLLLTAPASSFQCKEKVSDEILSKCNACYKSPCTNQGVC 372
            VK  Y EPGIARC  P  M  KLLLT PA  F+C+   +  + +KC+ C  SPC NQG C
Sbjct: 881  VKTGYKEPGIARCAGPQDMEGKLLLTTPAKKFECQGPPTLAVQAKCDLCLSSPCQNQGTC 940

Query: 373  EPLPERQYQCRCTPGYHGQHCEFMIDACYGNPCRNSGTCKLL--EEGRFNCECAPGYTGD 430
               P   Y+C C  GY G+ CE  +D+C   PC N GTC     E+  F C C  G+ G 
Sbjct: 941  HNDPLEVYRCACPSGYKGRDCEVSLDSCSSGPCENGGTCHAQEGEDAPFTCSCPTGFEGP 1000

Query: 431  RCEINIDDCLSHKCENNATCVDLIQAYECRCAPGFQGEFCQTKTPFCAGEYNPCRNGARC 490
             C +N DDC+ H C N   CVD +  Y C+C   ++G+ C+     C+ + NPC++ A+C
Sbjct: 1001 TCGVNTDDCVDHACANGGVCVDGVGNYTCQCPLQYEGKACEQLVDLCSPDLNPCQHEAQC 1060

Query: 491  LDHFSHYTCECTPGFSGVNCTVNVDDCVNHMCQNGGTCVDGINDYTCKCEGDFVGKFCEI 550
            +       CEC PG++G NC+ N DDC +H CQNG  C+D +N Y+C C   + G+ CEI
Sbjct: 1061 VGTPDGPRCECMPGYAGDNCSENQDDCRDHRCQNGAQCMDEVNSYSCLCAEGYSGQLCEI 1120

Query: 551  APFVAMMYPQTSPCQHHDCKNGICFQPQGSNDYLCKCAPGYSGKE 595
             P +       SPC+  +C+NG     QG N  +C+C PG+ G E
Sbjct: 1121 PPHLPA---PKSPCEGTECQNGANCVDQG-NRPVCQCLPGFGGPE 1161

Thought to act as molecular guidance cue in cellular migration, and function appears to be mediated by interaction with roundabout homolog receptors. During neural development involved in axonal navigation at the ventral midline of the neural tube and projection of axons to different regions (By similarity). SLIT1 and SLIT2 together seem to be essential for midline guidance in the forebrain by acting as repulsive signal preventing inappropriate midline crossing by axons projecting from the olfactory bulb.

Homo sapiens (taxid: 9606)

>sp|O88279|SLIT1_RAT Slit homolog 1 protein OS=Rattus norvegicus GN=Slit1 PE=1 SV=1

 Score =  344 bits (882), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 199/457 (43%), Positives = 261/457 (57%), Gaps = 23/457 (5%)

Query: 155  IEDNAF------EGENDQGCLGDNYCPPKCTCTVRVLFYDGR------AGECYIAVELFS 202
            ++D AF      EG+ + GCL    CP +C C   V+    +       G      EL+ 
Sbjct: 709  LQDVAFPDFRCEEGQEEVGCLPRPQCPQECACLDTVVRCSNKHLQALPKGIPKNVTELYL 768

Query: 203  SRIRVSYYVGNYPVSTMYR--DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDAL 260
               + +   G        +  DLSNN+I  LSN +F+ +S+L+ LILSYN LQCI   A 
Sbjct: 769  DGNQFTLVPGQLSTFKYLQLVDLSNNKISSLSNSSFTNMSQLTTLILSYNALQCIPPLAF 828

Query: 261  AGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIGGNPLYCDCGLAWLSEWVKRDYVEP 320
             GL+SLR++SLHGND+S + EG FAD+ +++HLAIG NPLYCDC L WLS WVK  Y EP
Sbjct: 829  QGLRSLRLLSLHGNDVSTLQEGIFADVTSLSHLAIGANPLYCDCHLRWLSSWVKTGYKEP 888

Query: 321  GIARCTEPASMRDKLLLTAPASSFQCKEKVSDEILSKCNACYKSPCTNQGVCEPLPERQY 380
            GIARC  P  M  KLLLT PA  F+C+   S  + +KC+ C  SPC NQG C   P   Y
Sbjct: 889  GIARCAGPPEMEGKLLLTTPAKKFECQGPPSLAVQAKCDPCLSSPCQNQGTCHNDPLEVY 948

Query: 381  QCRCTPGYHGQHCEFMIDACYGNPCRNSGTCKLL--EEGRFNCECAPGYTGDRCEINIDD 438
            +C C  GY G++CE  +D+C  NPC N GTC     E+  F C C  G+ G  C +N DD
Sbjct: 949  RCTCPSGYKGRNCEVSLDSCSSNPCGNGGTCHAQEGEDAGFTCSCPSGFEGLTCGMNTDD 1008

Query: 439  CLSHKCENNATCVDLIQAYECRCAPGFQGEFCQTKTPFCAGEYNPCRNGARCLDHFSHYT 498
            C+ H C N   CVD I  Y C+C   + G  C+    FC+ + NPC++ A+C+       
Sbjct: 1009 CVKHDCVNGGVCVDGIGNYTCQCPLQYTGRACEQLVDFCSPDLNPCQHEAQCVGTPEGPR 1068

Query: 499  CECTPGFSGVNCTVNVDDCVNHMCQNGGTCVDGINDYTCKCEGDFVGKFCEIAPFVAMMY 558
            CEC PG++G NC+ N DDC +H CQNG  CVD IN Y C C   + G+ CEI P      
Sbjct: 1069 CECVPGYTGDNCSKNQDDCKDHQCQNGAQCVDEINSYACLCAEGYSGQLCEIPP-----A 1123

Query: 559  PQTSPCQHHDCKNGICFQPQGSNDYLCKCAPGYSGKE 595
            P+ S C+  +C+NG     QGS   +C+C PG+ G E
Sbjct: 1124 PRNS-CEGTECQNGANCVDQGSRP-VCQCLPGFGGPE 1158

Thought to act as molecular guidance cue in cellular migration, and function appears to be mediated by interaction with roundabout homolog receptors. During neural development involved in axonal navigation at the ventral midline of the neural tube and projection of axons to different regions. SLIT1 and SLIT2 together seem to be essential for midline guidance in the forebrain by acting as repulsive signal preventing inappropriate midline crossing by axons projecting from the olfactory bulb.

Rattus norvegicus (taxid: 10116)

>sp|Q80TR4|SLIT1_MOUSE Slit homolog 1 protein OS=Mus musculus GN=Slit1 PE=1 SV=2

 Score =  341 bits (874), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 213/525 (40%), Positives = 279/525 (53%), Gaps = 57/525 (10%)

Query: 120  LILNDNEIGKIKSDGLFGRLPNLIKLDL-------------------RRNQVTG------ 154
            L L DN I  I S G F  L  L  L+L                   +R  VTG      
Sbjct: 642  LSLYDNHITTI-SPGAFDTLQALSTLNLLANPFNCNCHLSWLGDWLRKRKIVTGNPRCQN 700

Query: 155  --------IEDNAF------EGENDQGCLGDNYCPPKCTCTVRVLFYDGR------AGEC 194
                    ++D AF      EG+ + GCL    CP +C C   V+    +       G  
Sbjct: 701  PDFLRQIPLQDVAFPDFRCEEGQEEVGCLPRPQCPQECACLDTVVRCSNKHLQALPKGIP 760

Query: 195  YIAVELFSSRIRVSYYVGNYPVSTMYR--DLSNNQIGFLSNFTFSPLSKLSQLILSYNKL 252
                EL+    + +   G        +  DLSNN+I  LSN +F+ +S+L+ LILSYN L
Sbjct: 761  KNVTELYLDGNQFTLVPGQLSTFKYLQLVDLSNNKISSLSNSSFTNMSQLTTLILSYNAL 820

Query: 253  QCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIGGNPLYCDCGLAWLSEW 312
            QCI   A  GL+SLR++SLHGND+S + EG FAD+ +++HLAIG NPLYCDC L WLS W
Sbjct: 821  QCIPPLAFQGLRSLRLLSLHGNDVSTLQEGIFADVTSLSHLAIGANPLYCDCRLRWLSSW 880

Query: 313  VKRDYVEPGIARCTEPASMRDKLLLTAPASSFQCKEKVSDEILSKCNACYKSPCTNQGVC 372
            VK  Y EPGIARC  P  M  KLLLT PA  F+C+   S  + +KC+ C  SPC NQG C
Sbjct: 881  VKTGYKEPGIARCAGPPEMEGKLLLTTPAKKFECQGPPSLAVQAKCDPCLSSPCQNQGTC 940

Query: 373  EPLPERQYQCRCTPGYHGQHCEFMIDACYGNPCRNSGTCKLL--EEGRFNCECAPGYTGD 430
               P   Y+C C  GY G+HCE  +D C  NPC N GTC     E+  F C C  G+ G 
Sbjct: 941  HNDPLEVYRCTCPSGYKGRHCEVSLDGCSSNPCGNGGTCHAQEGEDAGFTCSCPSGFEGP 1000

Query: 431  RCEINIDDCLSHKCENNATCVDLIQAYECRCAPGFQGEFCQTKTPFCAGEYNPCRNGARC 490
             C ++ DDC+ H C N   CVD +  Y C+C   + G  C+    FC+ + NPC++ A+C
Sbjct: 1001 TCGVDTDDCVKHACVNGGVCVDGVGNYTCQCPLQYTGRACEQLVDFCSPDMNPCQHEAQC 1060

Query: 491  LDHFSHYTCECTPGFSGVNCTVNVDDCVNHMCQNGGTCVDGINDYTCKCEGDFVGKFCEI 550
            +       CEC  G++G NC+ N DDC +H CQNG  CVD +N Y C C   + G+ CEI
Sbjct: 1061 VGTPDGPRCECMLGYTGDNCSENQDDCKDHKCQNGAQCVDEVNSYACLCVEGYSGQLCEI 1120

Query: 551  APFVAMMYPQTSPCQHHDCKNGICFQPQGSNDYLCKCAPGYSGKE 595
             P      P++S C+  +C+NG     QGS   +C+C PG+ G E
Sbjct: 1121 PP-----APRSS-CEGTECQNGANCVDQGSRP-VCQCLPGFGGPE 1158

Thought to act as molecular guidance cue in cellular migration, and function appears to be mediated by interaction with roundabout homolog receptors. During neural development involved in axonal navigation at the ventral midline of the neural tube and projection of axons to different regions (By similarity). SLIT1 and SLIT2 together seem to be essential for midline guidance in the forebrain by acting as repulsive signal preventing inappropriate midline crossing by axons projecting from the olfactory bulb.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	604
328707772	1452	PREDICTED: protein slit-like [Acyrthosip	0.713	0.296	0.680	0.0
270002729	1394	slit [Tribolium castaneum]	0.753	0.326	0.607	1e-175
91078086	1430	PREDICTED: similar to AGAP002793-PA [Tri	0.753	0.318	0.607	1e-175
242017207	1471	slit protein, putative [Pediculus humanu	0.731	0.300	0.633	1e-175
157120931	1393	slit protein [Aedes aegypti] gi|10887476	0.718	0.311	0.646	1e-171
347968570	1451	AGAP002793-PA [Anopheles gambiae str. PE	0.713	0.297	0.641	1e-170
170036234	1448	slit protein [Culex quinquefasciatus] gi	0.708	0.295	0.630	1e-169
442623865	2157	slit, isoform F [Drosophila melanogaster	0.740	0.207	0.603	1e-168
195124784	1529	GI21301 [Drosophila mojavensis] gi|19391	0.741	0.293	0.606	1e-168
195429361	1514	GK19542 [Drosophila willistoni] gi|19415	0.741	0.295	0.605	1e-168

>gi|328707772|ref|XP_003243498.1| PREDICTED: protein slit-like [Acyrthosiphon pisum]

 Score =  646 bits (1666), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 304/447 (68%), Positives = 360/447 (80%), Gaps = 16/447 (3%)

Query: 162  GENDQGCLGDNYCPPKCTCTVRVLF------------YDGRAGECYIAVELFSSRIRVSY 209
            G+NDQGCLGDNYCPPKCTC   V+                   E Y+ V   +S I+V  
Sbjct: 692  GDNDQGCLGDNYCPPKCTCIGTVVRCTRAKLVEIPKNIPVETSELYLDVNEITS-IKVDR 750

Query: 210  YVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRII 269
               N+  S    DLSNN +  LSN TFS LSKLS L+L YNKLQC+++++L+GLKSLRII
Sbjct: 751  L--NHLKSLTRLDLSNNHLIVLSNNTFSQLSKLSTLLLGYNKLQCLEKNSLSGLKSLRII 808

Query: 270  SLHGNDISMIPEGAFADLHAITHLAIGGNPLYCDCGLAWLSEWVKRDYVEPGIARCTEPA 329
            SLHGN+IS+IP+G F+ L +ITHL IG NPLYCDCGL WL+EW+K+D++E GIARC EP 
Sbjct: 809  SLHGNNISLIPDGTFSGLDSITHLGIGSNPLYCDCGLQWLAEWIKKDFIESGIARCAEPN 868

Query: 330  SMRDKLLLTAPASSFQCKEKVSDEILSKCNACYKSPCTNQGVCEPLPERQYQCRCTPGYH 389
            SM+DKLLL+ P SSF CKE +  +ILSKCN C+ +PC+N+G CEPLPERQY+CRC PGYH
Sbjct: 869  SMKDKLLLSTPVSSFVCKEPIGKDILSKCNTCFTNPCSNEGFCEPLPERQYKCRCNPGYH 928

Query: 390  GQHCEFMIDACYGNPCRNSGTCKLLEEGRFNCECAPGYTGDRCEINIDDCLSHKCENNAT 449
            G+HCE MIDACYGNPCRNSGTCKLLEEGRF+C+CAPG+TGDRCE NIDDCL++KCENN+T
Sbjct: 929  GKHCENMIDACYGNPCRNSGTCKLLEEGRFSCQCAPGFTGDRCETNIDDCLTNKCENNST 988

Query: 450  CVDLIQAYECRCAPGFQGEFCQTKTPFCAGEYNPCRNGARCLDHFSHYTCECTPGFSGVN 509
            CVDLIQAYECRC PG+ G++CQTK  FC+ ++NPC NGA+C+DH +HY CEC  GFSG N
Sbjct: 989  CVDLIQAYECRCLPGYTGDYCQTKIQFCSKDFNPCHNGAKCVDHITHYACECPLGFSGDN 1048

Query: 510  CTVNVDDCVNHMCQNGGTCVDGINDYTCKCEGDFVGKFCEIAPFVAMMYPQTSPCQHHDC 569
            CTVN DDC NHMCQNGG CVDGINDYTCKC G++ GKFC+I+P VA+MYPQTSPCQHH+C
Sbjct: 1049 CTVNNDDCQNHMCQNGGLCVDGINDYTCKCVGEYTGKFCDISPSVALMYPQTSPCQHHEC 1108

Query: 570  KNGICFQPQGS-NDYLCKCAPGYSGKE 595
            KNGIC+QP GS NDYLCKCAPGYSGK 
Sbjct: 1109 KNGICYQPNGSTNDYLCKCAPGYSGKR 1135

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270002729|gb|EEZ99176.1| slit [Tribolium castaneum]

 Score =  622 bits (1604), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 297/489 (60%), Positives = 365/489 (74%), Gaps = 34/489 (6%)

Query: 130  IKSDGLFG---------RLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDNYCPPKCTC 180
            +KS GL G         R+ +++  +L +N+     DN      DQGCLG+NYCPPKC+C
Sbjct: 599  LKSKGLSGSPPKCAGPTRVKDVLIRELPKNEFKCTSDN------DQGCLGENYCPPKCSC 652

Query: 181  TVRVLF------------YDGRAGECYIAVELFSS--RIRVSYYVGNYPVSTMYRDLSNN 226
            T  V+                   E Y+ +   ++    R+S+       S    DLS+N
Sbjct: 653  TGTVVRCSRAKLTEIPRGIPPETSELYLDINEITTIQADRISHL-----KSLTRLDLSSN 707

Query: 227  QIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFAD 286
            QIG LSN TF+ LSKLS LI+SYNKLQC+ R+AL GLKSLRI+SLHGN ISMIPEG F++
Sbjct: 708  QIGMLSNNTFANLSKLSTLIISYNKLQCVQRNALTGLKSLRILSLHGNQISMIPEGTFSN 767

Query: 287  LHAITHLAIGGNPLYCDCGLAWLSEWVKRDYVEPGIARCTEPASMRDKLLLTAPASSFQC 346
            L +I+H+A+G NPLYCDC L WLS+WVK DYVEPGIA C EPA+M+DK +L+ P+++FQC
Sbjct: 768  LKSISHIALGSNPLYCDCSLRWLSDWVKVDYVEPGIAHCAEPANMKDKSILSTPSTAFQC 827

Query: 347  KEKVSDEILSKCNACYKSPCTNQGVCEPLPERQYQCRCTPGYHGQHCEFMIDACYGNPCR 406
            K KVS+EIL+KC+AC+  PC N G C   PER Y+C+C PGYHG++CEFMIDACYGNPCR
Sbjct: 828  KGKVSNEILAKCDACFTFPCKNGGKCATQPERDYECKCAPGYHGKNCEFMIDACYGNPCR 887

Query: 407  NSGTCKLLEEGRFNCECAPGYTGDRCEINIDDCLSHKCENNATCVDLIQAYECRCAPGFQ 466
            N  +CK+LEEGRF+C C  G+TG RCE NIDDC S+KC+NNATCVDL+ +Y+C+C  GF 
Sbjct: 888  NGASCKVLEEGRFSCVCQAGFTGLRCETNIDDCASNKCQNNATCVDLVNSYQCKCPAGFM 947

Query: 467  GEFCQTKTPFCAGEYNPCRNGARCLDHFSHYTCECTPGFSGVNCTVNVDDCVNHMCQNGG 526
            GEFC+TK PFC  +YNPC+N ARC+DH ++YTCEC PGF G NCT+N+DDC NHMCQNG 
Sbjct: 948  GEFCETKIPFCTDQYNPCKNNARCVDHDTYYTCECLPGFKGENCTINIDDCENHMCQNGA 1007

Query: 527  TCVDGINDYTCKCEGDFVGKFCEIAPFVAMMYPQTSPCQHHDCKNGICFQPQGSNDYLCK 586
            TC+DGIN+Y CKC+GDF GKFCEI P VAMMYPQTSPCQHHDC +G+CFQP GSNDYLCK
Sbjct: 1008 TCIDGINEYKCKCDGDFSGKFCEITPLVAMMYPQTSPCQHHDCVHGVCFQPSGSNDYLCK 1067

Query: 587  CAPGYSGKE 595
            CAPGYSGK 
Sbjct: 1068 CAPGYSGKR 1076

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91078086|ref|XP_972265.1| PREDICTED: similar to AGAP002793-PA [Tribolium castaneum]

 Score =  622 bits (1604), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 297/489 (60%), Positives = 365/489 (74%), Gaps = 34/489 (6%)

Query: 130  IKSDGLFG---------RLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDNYCPPKCTC 180
            +KS GL G         R+ +++  +L +N+     DN      DQGCLG+NYCPPKC+C
Sbjct: 635  LKSKGLSGSPPKCAGPTRVKDVLIRELPKNEFKCTSDN------DQGCLGENYCPPKCSC 688

Query: 181  TVRVLF------------YDGRAGECYIAVELFSS--RIRVSYYVGNYPVSTMYRDLSNN 226
            T  V+                   E Y+ +   ++    R+S+       S    DLS+N
Sbjct: 689  TGTVVRCSRAKLTEIPRGIPPETSELYLDINEITTIQADRISHL-----KSLTRLDLSSN 743

Query: 227  QIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFAD 286
            QIG LSN TF+ LSKLS LI+SYNKLQC+ R+AL GLKSLRI+SLHGN ISMIPEG F++
Sbjct: 744  QIGMLSNNTFANLSKLSTLIISYNKLQCVQRNALTGLKSLRILSLHGNQISMIPEGTFSN 803

Query: 287  LHAITHLAIGGNPLYCDCGLAWLSEWVKRDYVEPGIARCTEPASMRDKLLLTAPASSFQC 346
            L +I+H+A+G NPLYCDC L WLS+WVK DYVEPGIA C EPA+M+DK +L+ P+++FQC
Sbjct: 804  LKSISHIALGSNPLYCDCSLRWLSDWVKVDYVEPGIAHCAEPANMKDKSILSTPSTAFQC 863

Query: 347  KEKVSDEILSKCNACYKSPCTNQGVCEPLPERQYQCRCTPGYHGQHCEFMIDACYGNPCR 406
            K KVS+EIL+KC+AC+  PC N G C   PER Y+C+C PGYHG++CEFMIDACYGNPCR
Sbjct: 864  KGKVSNEILAKCDACFTFPCKNGGKCATQPERDYECKCAPGYHGKNCEFMIDACYGNPCR 923

Query: 407  NSGTCKLLEEGRFNCECAPGYTGDRCEINIDDCLSHKCENNATCVDLIQAYECRCAPGFQ 466
            N  +CK+LEEGRF+C C  G+TG RCE NIDDC S+KC+NNATCVDL+ +Y+C+C  GF 
Sbjct: 924  NGASCKVLEEGRFSCVCQAGFTGLRCETNIDDCASNKCQNNATCVDLVNSYQCKCPAGFM 983

Query: 467  GEFCQTKTPFCAGEYNPCRNGARCLDHFSHYTCECTPGFSGVNCTVNVDDCVNHMCQNGG 526
            GEFC+TK PFC  +YNPC+N ARC+DH ++YTCEC PGF G NCT+N+DDC NHMCQNG 
Sbjct: 984  GEFCETKIPFCTDQYNPCKNNARCVDHDTYYTCECLPGFKGENCTINIDDCENHMCQNGA 1043

Query: 527  TCVDGINDYTCKCEGDFVGKFCEIAPFVAMMYPQTSPCQHHDCKNGICFQPQGSNDYLCK 586
            TC+DGIN+Y CKC+GDF GKFCEI P VAMMYPQTSPCQHHDC +G+CFQP GSNDYLCK
Sbjct: 1044 TCIDGINEYKCKCDGDFSGKFCEITPLVAMMYPQTSPCQHHDCVHGVCFQPSGSNDYLCK 1103

Query: 587  CAPGYSGKE 595
            CAPGYSGK 
Sbjct: 1104 CAPGYSGKR 1112

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242017207|ref|XP_002429083.1| slit protein, putative [Pediculus humanus corporis] gi|212513947|gb|EEB16345.1| slit protein, putative [Pediculus humanus corporis]

 Score =  620 bits (1600), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 296/467 (63%), Positives = 349/467 (74%), Gaps = 25/467 (5%)

Query: 147  LRRNQVTGIEDNAFE--GENDQGCLGDNYCPPKCTCT------VRVLFYDGRAG------ 192
            L+   +  +  N F+  G+ DQGCLGD+YCPPKC+CT       R    +   G      
Sbjct: 692  LKDTLIQELSHNDFKCVGDQDQGCLGDSYCPPKCSCTGTVVRCTRAKLKEIPRGIPPDTS 751

Query: 193  ECYIAVELFSS----RIRVSYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILS 248
            E Y+ V    S    RI    Y+          DLSNNQI  LSN+TF+ L++LS LI++
Sbjct: 752  ELYLDVNEIQSVQIPRIHHLKYLTKL-------DLSNNQISVLSNYTFANLTRLSTLIIT 804

Query: 249  YNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIGGNPLYCDCGLAW 308
            YNK+QC++  A +GLKSLRI+SLHGNDIS +    FADL +ITHLA+G NP YCDC L W
Sbjct: 805  YNKIQCVEVHAFSGLKSLRIVSLHGNDISQLHNETFADLESITHLALGDNPFYCDCNLRW 864

Query: 309  LSEWVKRDYVEPGIARCTEPASMRDKLLLTAPASSFQCKEKVSDEILSKCNACYKSPCTN 368
            L+EWVK DYVEPG+A C EP S++ KLLLT P+S+FQCKEKV +EIL+KCNACY  PC N
Sbjct: 865  LAEWVKSDYVEPGVAFCAEPISLKGKLLLTTPSSAFQCKEKVGNEILAKCNACYTFPCVN 924

Query: 369  QGVCEPLPERQYQCRCTPGYHGQHCEFMIDACYGNPCRNSGTCKLLEEGRFNCECAPGYT 428
               CEPLPERQY+CRC PGYHG HC+ MIDACYGNPC N GTCK+LEEGRFNC C PGYT
Sbjct: 925  GAQCEPLPERQYKCRCQPGYHGPHCQHMIDACYGNPCSNGGTCKVLEEGRFNCLCPPGYT 984

Query: 429  GDRCEINIDDCLSHKCENNATCVDLIQAYECRCAPGFQGEFCQTKTPFCAGEYNPCRNGA 488
            G RCEINIDDCL+HKCENNATC D + +Y C+C PGF GE+C+ K PFC  EYN C+NGA
Sbjct: 985  GVRCEINIDDCLNHKCENNATCHDSVLSYVCKCLPGFMGEYCEIKIPFCKKEYNSCKNGA 1044

Query: 489  RCLDHFSHYTCECTPGFSGVNCTVNVDDCVNHMCQNGGTCVDGINDYTCKCEGDFVGKFC 548
             C DH+++Y+CEC PG++G NCT+N+DDC NH+CQNGGTCVDGINDYTCKC  DF GKFC
Sbjct: 1045 TCRDHYTYYSCECLPGYTGENCTINIDDCQNHLCQNGGTCVDGINDYTCKCSEDFSGKFC 1104

Query: 549  EIAPFVAMMYPQTSPCQHHDCKNGICFQPQGSNDYLCKCAPGYSGKE 595
            EI P VAM+YPQTSPCQ HDCKNGICFQP GSNDYLCKC PGY+GK 
Sbjct: 1105 EIPPMVAMLYPQTSPCQQHDCKNGICFQPTGSNDYLCKCHPGYTGKR 1151

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157120931|ref|XP_001659800.1| slit protein [Aedes aegypti] gi|108874764|gb|EAT38989.1| AAEL009175-PA, partial [Aedes aegypti]

 Score =  608 bits (1567), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 287/444 (64%), Positives = 344/444 (77%), Gaps = 10/444 (2%)

Query: 162  GENDQGCLGDNYCPPKCTCTVRVLF-YDGRAGECYIAV-----ELF--SSRIRVSYYVGN 213
             E DQGCLG+ YCPP CTCT  V+     +  E   ++     EL+  S+ I + +    
Sbjct: 622  SEADQGCLGEGYCPPSCTCTGTVVRCSRNKLKEIPKSIPSETTELYLESNDISMVHTDRI 681

Query: 214  YPVSTMYR-DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLH 272
              + ++ R DLSNN+IG LSN TF+ LS+LS LI+SYN LQCI + ALAGLK L+++SLH
Sbjct: 682  SHLKSLTRLDLSNNKIGILSNHTFANLSRLSTLIISYNNLQCIQQYALAGLKQLKVLSLH 741

Query: 273  GNDISMIPEGAFADLHAITHLAIGGNPLYCDCGLAWLSEWVKRDYVEPGIARCTEPASMR 332
            GN ISMIP+G FADL +ITH+A+G NPLYCDC L WLSEWVKRDYVEPGIARC EP  M+
Sbjct: 742  GNHISMIPDGTFADLQSITHIALGSNPLYCDCSLKWLSEWVKRDYVEPGIARCAEPELMK 801

Query: 333  DKLLLTAPASSFQCKEKVSDEILSKCNACYKSPCTNQGVCEPLPERQYQCRCTPGYHGQH 392
            DKL+L+ PAS F CK KVS+EILSKC+ACY  PC N  VC+PLPERQY+C+C PGYHG H
Sbjct: 802  DKLILSTPASQFLCKGKVSNEILSKCDACYTFPCKNNAVCKPLPERQYECQCPPGYHGAH 861

Query: 393  CEFMIDACYGNPCRNSGTCKLLEEGRFNCECAPGYTGDRCEINIDDCLSHKCENNATCVD 452
            CEFMIDACYGNPCRN+GTC +LEEGRF+C+C  GY+G RCEINIDDC +HKC NNATCVD
Sbjct: 862  CEFMIDACYGNPCRNNGTCTVLEEGRFSCQCTSGYSGARCEINIDDCTNHKCLNNATCVD 921

Query: 453  LIQAYECRCAPGFQGEFCQTKTPFCAGEYNPCRNGARCLDHFSHYTCECTPGFSGVNCTV 512
             + +Y C C PGF GEFC  K  FC  ++NPC+NGA+C+DH +HY+CEC PG+ G+NC+ 
Sbjct: 922  GVNSYSCACIPGFTGEFCDAKIEFCGKDFNPCQNGAKCVDHSTHYSCECVPGYRGLNCSE 981

Query: 513  NVDDCVNHMCQNGGTCVDGINDYTCKCEGDFVGKFCEIAPFVAMMYPQTSPCQHHDCKNG 572
            N+DDCVNHMCQNGGTC+DGINDY CKC  +F GKFCE  P VAM+YPQTSPCQ H+CK G
Sbjct: 982  NIDDCVNHMCQNGGTCIDGINDYICKCPSEFTGKFCEGTPMVAMLYPQTSPCQQHECKFG 1041

Query: 573  ICFQPQ-GSNDYLCKCAPGYSGKE 595
            +CFQP   S DY+CKC PGYSGK 
Sbjct: 1042 VCFQPNPSSADYICKCGPGYSGKR 1065

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|347968570|ref|XP_312121.5| AGAP002793-PA [Anopheles gambiae str. PEST] gi|333467943|gb|EAA07783.5| AGAP002793-PA [Anopheles gambiae str. PEST]

 Score =  605 bits (1560), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 283/441 (64%), Positives = 338/441 (76%), Gaps = 10/441 (2%)

Query: 165  DQGCLGDNYCPPKCTCTVRVLF-YDGRAGECYIAV-----ELFSSRIRVSYYVGN---YP 215
            DQGCLG+ YCPP CTCT  V+     +  E   ++     EL+     +S    N   + 
Sbjct: 675  DQGCLGEGYCPPSCTCTGTVVRCSRNKLKEIPKSIPAETTELYLESNEISMIHSNRISHL 734

Query: 216  VSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGND 275
             +    DLSNNQIG LSN TF+ LSKLS LI+SYN LQC+ + ALAGL +L+++SLHGN 
Sbjct: 735  KALTRLDLSNNQIGILSNHTFANLSKLSTLIISYNNLQCVQKYALAGLTNLKVLSLHGNK 794

Query: 276  ISMIPEGAFADLHAITHLAIGGNPLYCDCGLAWLSEWVKRDYVEPGIARCTEPASMRDKL 335
            ISMIPEG F DL +ITH+A+G NPLYCDC L WLSEWVKRDYVEPGIARC EP  M+DKL
Sbjct: 795  ISMIPEGTFNDLQSITHIALGSNPLYCDCSLRWLSEWVKRDYVEPGIARCAEPEPMKDKL 854

Query: 336  LLTAPASSFQCKEKVSDEILSKCNACYKSPCTNQGVCEPLPERQYQCRCTPGYHGQHCEF 395
            +L+ PA+ F C  KVS+EILSKC+ACY  PC N+  C  LPERQY+C+C PGYHG HCEF
Sbjct: 855  ILSTPAAQFVCSGKVSNEILSKCDACYTFPCKNEATCSALPERQYECKCKPGYHGTHCEF 914

Query: 396  MIDACYGNPCRNSGTCKLLEEGRFNCECAPGYTGDRCEINIDDCLSHKCENNATCVDLIQ 455
            MIDACYGNPCRN+GTC +LEEGRF+C C  GYTG RCE+NIDDC+ HKC+NN TCVD + 
Sbjct: 915  MIDACYGNPCRNNGTCTVLEEGRFSCHCLQGYTGSRCEVNIDDCVGHKCQNNGTCVDGVN 974

Query: 456  AYECRCAPGFQGEFCQTKTPFCAGEYNPCRNGARCLDHFSHYTCECTPGFSGVNCTVNVD 515
            +Y C CA  F GE+C++K  FC  ++NPC+NGA+C+DH +HY+C+C PG+ G+NCT N+D
Sbjct: 975  SYSCSCAASFTGEYCESKIEFCGKDFNPCQNGAKCVDHTTHYSCDCLPGYRGLNCTDNID 1034

Query: 516  DCVNHMCQNGGTCVDGINDYTCKCEGDFVGKFCEIAPFVAMMYPQTSPCQHHDCKNGICF 575
            DCVNHMCQNGGTCVDGINDYTCKC  +F GKFCE AP VAMMYPQTSPCQ H+CK G+CF
Sbjct: 1035 DCVNHMCQNGGTCVDGINDYTCKCPHEFTGKFCEGAPMVAMMYPQTSPCQQHECKFGVCF 1094

Query: 576  QPQ-GSNDYLCKCAPGYSGKE 595
            QP   S DY+CKCAPGYSGK 
Sbjct: 1095 QPNPSSADYICKCAPGYSGKR 1115

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170036234|ref|XP_001845970.1| slit protein [Culex quinquefasciatus] gi|167878768|gb|EDS42151.1| slit protein [Culex quinquefasciatus]

 Score =  600 bits (1547), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 280/444 (63%), Positives = 340/444 (76%), Gaps = 16/444 (3%)

Query: 165  DQGCLGDNYCPPKCTCTVRVL------------FYDGRAGECYIAVELFSSRIRVSYYVG 212
            DQGCLG+ YCPP CTCT  V+                   E Y+      S I++S    
Sbjct: 671  DQGCLGEGYCPPSCTCTGTVVRCSRNKLKEIPKSIPSETTELYLESNEI-SMIQMSRISH 729

Query: 213  NYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLH 272
               ++ +  DLSNN+I  LSN TF+ LS+LS LI+SYN LQC+ + ALAGLK+L+++SLH
Sbjct: 730  LKALTRL--DLSNNKISMLSNHTFANLSRLSTLIISYNNLQCVQQYALAGLKNLKVLSLH 787

Query: 273  GNDISMIPEGAFADLHAITHLAIGGNPLYCDCGLAWLSEWVKRDYVEPGIARCTEPASMR 332
            GN ISMIP+G+FADL AITH+A+G NPLYCDC L WLSEWVKRDYVEPGIARC EP +M+
Sbjct: 788  GNHISMIPDGSFADLQAITHIALGSNPLYCDCSLKWLSEWVKRDYVEPGIARCAEPDAMK 847

Query: 333  DKLLLTAPASSFQCKEKVSDEILSKCNACYKSPCTNQGVCEPLPERQYQCRCTPGYHGQH 392
            DKL+L+ PA+ F CK KVS+EILSKC+ACY  PC N  VC+ LPERQY+C+C PGYHG H
Sbjct: 848  DKLVLSTPAAQFVCKGKVSNEILSKCDACYTFPCKNNAVCKALPERQYECQCPPGYHGAH 907

Query: 393  CEFMIDACYGNPCRNSGTCKLLEEGRFNCECAPGYTGDRCEINIDDCLSHKCENNATCVD 452
            CEFMIDACYGNPCRN+GTC ++EEGRF+C+C  GY+G RCEINIDDC  HKC NNATCVD
Sbjct: 908  CEFMIDACYGNPCRNNGTCTVMEEGRFSCQCMSGYSGARCEINIDDCTGHKCLNNATCVD 967

Query: 453  LIQAYECRCAPGFQGEFCQTKTPFCAGEYNPCRNGARCLDHFSHYTCECTPGFSGVNCTV 512
             + +Y C C PG+ G +C++K  FC  ++NPC+NGA+C+DH +HY+CEC PG+ G+NCT 
Sbjct: 968  GVNSYSCGCLPGYTGPYCESKIEFCGPDFNPCQNGAKCVDHSTHYSCECVPGYRGINCTD 1027

Query: 513  NVDDCVNHMCQNGGTCVDGINDYTCKCEGDFVGKFCEIAPFVAMMYPQTSPCQHHDCKNG 572
            N+DDCVNHMCQNGGTC+DGINDY CKC  +F GKFCE  P VAM+YPQTSPCQ H+CK G
Sbjct: 1028 NIDDCVNHMCQNGGTCLDGINDYVCKCPSEFTGKFCEGTPMVAMLYPQTSPCQQHECKFG 1087

Query: 573  ICFQPQ-GSNDYLCKCAPGYSGKE 595
            +CFQP   S DY+CKCAPGYSGK 
Sbjct: 1088 VCFQPNPSSADYICKCAPGYSGKR 1111

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|442623865|ref|NP_001261017.1| slit, isoform F [Drosophila melanogaster] gi|440214437|gb|AGB93549.1| slit, isoform F [Drosophila melanogaster]

 Score =  599 bits (1545), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 279/462 (60%), Positives = 353/462 (76%), Gaps = 15/462 (3%)

Query: 147  LRRNQVTGIEDNAFE--GENDQGCLGDNYCPPKCTCTVRVL------FYDGRAGECYIAV 198
            +R  Q+  +  + F+   EN +GCLGD YCPP CTCT  V+        +   G      
Sbjct: 710  VRDVQIKDLPHSEFKCSSENSEGCLGDGYCPPSCTCTGTVVRCSRNQLKEIPRGIPAETS 769

Query: 199  ELF--SSRIRVSYYVGNYPVSTMYR-DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCI 255
            EL+  S+ I   +Y     + ++ R DLSNNQI  LSN+TF+ L+KLS LI+SYNKLQC+
Sbjct: 770  ELYLESNEIEQIHYERIRHLRSLTRLDLSNNQITILSNYTFANLTKLSTLIISYNKLQCL 829

Query: 256  DRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIGGNPLYCDCGLAWLSEWVKR 315
             R AL+GL +LR++SLHGN ISM+PEG+F DL ++TH+A+G NPLYCDCGL W S+W+K 
Sbjct: 830  QRHALSGLNNLRVLSLHGNRISMLPEGSFEDLKSLTHIALGSNPLYCDCGLKWFSDWIKL 889

Query: 316  DYVEPGIARCTEPASMRDKLLLTAPASSFQCKEKVSDEILSKCNACYKSPCTNQGVCEPL 375
            DYVEPGIARC EP  M+DKL+L+ P+SSF C+ +V ++IL+KCNAC++ PC NQ  C  L
Sbjct: 890  DYVEPGIARCAEPEQMKDKLILSTPSSSFVCRGRVRNDILAKCNACFEQPCQNQAQCVAL 949

Query: 376  PERQYQCRCTPGYHGQHCEFMIDACYGNPCRNSGTCKLLEEGRFNCECAPGYTGDRCEIN 435
            P+R+YQC C PGYHG+HCEFMIDACYGNPCRN+ TC +LEEGRF+C+CAPGYTG RCE N
Sbjct: 950  PQREYQCLCQPGYHGKHCEFMIDACYGNPCRNNATCTVLEEGRFSCQCAPGYTGARCETN 1009

Query: 436  IDDCLSH-KCENNATCVDLIQAYECRCAPGFQGEFCQTKTPFCAGEYNPCRNGARCLDHF 494
            IDDCL   KC+NNATC+D +++Y+C C PGF GEFC TK  FC+ E+NPC NGA+C+DHF
Sbjct: 1010 IDDCLGEIKCQNNATCIDGVESYKCECQPGFSGEFCDTKIQFCSPEFNPCANGAKCMDHF 1069

Query: 495  SHYTCECTPGFSGVNCTVNVDDCVNHMCQNGGTCVDGINDYTCKCEGDFVGKFCEIAPFV 554
            +HY+C+C  GF G NCT N+DDC NHMCQNGGTCVDGINDY C+C  D+ GK+CE    +
Sbjct: 1070 THYSCDCQAGFHGTNCTDNIDDCQNHMCQNGGTCVDGINDYQCRCPDDYTGKYCEGHNMI 1129

Query: 555  AMMYPQTSPCQHHDCKNGICFQP--QGSNDYLCKCAPGYSGK 594
            +MMYPQTSPCQ+H+CK+G+CFQP  QGS DYLC+C PGY+GK
Sbjct: 1130 SMMYPQTSPCQNHECKHGVCFQPNAQGS-DYLCRCHPGYTGK 1170

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195124784|ref|XP_002006867.1| GI21301 [Drosophila mojavensis] gi|193911935|gb|EDW10802.1| GI21301 [Drosophila mojavensis]

 Score =  597 bits (1540), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 280/462 (60%), Positives = 350/462 (75%), Gaps = 14/462 (3%)

Query: 147  LRRNQVTGIEDNAFE--GENDQGCLGDNYCPPKCTCTVRVL------FYDGRAGECYIAV 198
            +R  Q+  +  N F+   +N++GCLGD YCPP CTCT  V+        +   G      
Sbjct: 733  VRDVQIKDLPHNEFKCSSDNNEGCLGDGYCPPACTCTGTVVRCSRNQLKEIPRGIPPETS 792

Query: 199  ELF--SSRIRVSYYVGNYPVSTMYR-DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCI 255
            EL+  S+ I   +Y     +  + R DLSNNQI  LSN+TF+ L+KLS LI+SYNKLQC+
Sbjct: 793  ELYLESNEIEQIHYERIRHLRALTRLDLSNNQITILSNYTFANLTKLSTLIISYNKLQCL 852

Query: 256  DRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIGGNPLYCDCGLAWLSEWVKR 315
             R AL+GL +LR++SLHGN ISM+PEG+F DL ++TH+A+G NPLYCDC L W S+W+K 
Sbjct: 853  QRHALSGLNNLRVLSLHGNRISMLPEGSFEDLKSLTHIALGSNPLYCDCSLKWFSDWIKL 912

Query: 316  DYVEPGIARCTEPASMRDKLLLTAPASSFQCKEKVSDEILSKCNACYKSPCTNQGVCEPL 375
            DYVEPGIARC EP  M+DKL+L+ P+S+F C+ KV +EIL+KCNACY+ PC N+  C  L
Sbjct: 913  DYVEPGIARCAEPEHMKDKLILSTPSSNFVCRGKVRNEILAKCNACYEQPCQNKAQCLAL 972

Query: 376  PERQYQCRCTPGYHGQHCEFMIDACYGNPCRNSGTCKLLEEGRFNCECAPGYTGDRCEIN 435
            P+R YQC C PGYHG+HCEFMIDACYGNPCRN+ TC +LEEGRF+C+CAPGYTG RCE N
Sbjct: 973  PQRDYQCLCQPGYHGRHCEFMIDACYGNPCRNNATCTVLEEGRFSCQCAPGYTGARCETN 1032

Query: 436  IDDCLSH--KCENNATCVDLIQAYECRCAPGFQGEFCQTKTPFCAGEYNPCRNGARCLDH 493
            IDDCL    +C+NNATC+D +Q+Y C C PGF GE+C TK  FC+ E+NPC NGA+CLDH
Sbjct: 1033 IDDCLGEDIRCQNNATCIDGVQSYRCECQPGFSGEWCDTKIQFCSQEFNPCANGAKCLDH 1092

Query: 494  FSHYTCECTPGFSGVNCTVNVDDCVNHMCQNGGTCVDGINDYTCKCEGDFVGKFCEIAPF 553
            FSHY+CEC  GF G+NCT N+DDC NHMCQNGGTC+DGINDY CKC  DF GK+CE    
Sbjct: 1093 FSHYSCECMAGFHGINCTDNIDDCQNHMCQNGGTCIDGINDYVCKCPDDFTGKYCEGHNL 1152

Query: 554  VAMMYPQTSPCQHHDCKNGICFQPQGS-NDYLCKCAPGYSGK 594
            ++MMYPQTSPCQ+H+CK+G+CFQP  + +DYLCKC PGY+GK
Sbjct: 1153 ISMMYPQTSPCQNHECKHGVCFQPNAAGSDYLCKCHPGYTGK 1194

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195429361|ref|XP_002062731.1| GK19542 [Drosophila willistoni] gi|194158816|gb|EDW73717.1| GK19542 [Drosophila willistoni]

 Score =  597 bits (1539), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 279/461 (60%), Positives = 350/461 (75%), Gaps = 13/461 (2%)

Query: 147  LRRNQVTGIEDNAFE--GENDQGCLGDNYCPPKCTCTVRVL------FYDGRAGECYIAV 198
            +R  Q+  +  N F+   EN +GCLGD YCPP CTCT  V+        +   G      
Sbjct: 720  VRDVQIKDLPHNEFKCSSENSEGCLGDGYCPPSCTCTGTVVRCSRNQLKEIPRGIPAETS 779

Query: 199  ELF--SSRIRVSYYVGNYPVSTMYR-DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCI 255
            EL+  S+ I   +Y     + ++ R DLSNNQI  LSN+TF+ L+KLS LI+SYNKLQC+
Sbjct: 780  ELYLESNEIEQIHYERIRHLRSLTRLDLSNNQITILSNYTFANLTKLSTLIISYNKLQCL 839

Query: 256  DRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIGGNPLYCDCGLAWLSEWVKR 315
             R AL+GL +LR++SLHGN ISM+PEG+F DL ++TH+A+G NPLYCDC L W S+W+K 
Sbjct: 840  QRHALSGLNNLRVLSLHGNRISMLPEGSFEDLKSLTHIALGSNPLYCDCSLKWFSDWIKL 899

Query: 316  DYVEPGIARCTEPASMRDKLLLTAPASSFQCKEKVSDEILSKCNACYKSPCTNQGVCEPL 375
            DYVEPGIARC EP  M+DKL+L+ P+S+F C+ KV +EIL+KCNACY+ PC N+  C  L
Sbjct: 900  DYVEPGIARCAEPEQMKDKLILSTPSSNFVCRGKVRNEILAKCNACYEQPCQNKAQCVAL 959

Query: 376  PERQYQCRCTPGYHGQHCEFMIDACYGNPCRNSGTCKLLEEGRFNCECAPGYTGDRCEIN 435
            PER+YQC C PGYHG+HCEFMIDACYGNPCRN+ TC +LEEGRF+C+CA GYTG RCE N
Sbjct: 960  PEREYQCLCQPGYHGKHCEFMIDACYGNPCRNNATCTVLEEGRFSCQCAAGYTGARCETN 1019

Query: 436  IDDCLSH-KCENNATCVDLIQAYECRCAPGFQGEFCQTKTPFCAGEYNPCRNGARCLDHF 494
            IDDCL   KC+NNATC+D +Q+Y C C PGF GE+C TK  FC+ E+NPC NGA+C+DHF
Sbjct: 1020 IDDCLGETKCQNNATCIDGVQSYTCECQPGFTGEYCDTKIQFCSQEFNPCANGAKCMDHF 1079

Query: 495  SHYTCECTPGFSGVNCTVNVDDCVNHMCQNGGTCVDGINDYTCKCEGDFVGKFCEIAPFV 554
            +HY+C+C  GF G+NCT N+DDC NHMCQNGGTC+DGINDY CKC  DF GK+CE    +
Sbjct: 1080 THYSCDCLAGFHGINCTDNIDDCQNHMCQNGGTCIDGINDYVCKCPDDFTGKYCEGHNMI 1139

Query: 555  AMMYPQTSPCQHHDCKNGICFQPQGS-NDYLCKCAPGYSGK 594
            +MMYPQTSPCQ+H+CK+G+CFQP  + +DYLCKC PGY+GK
Sbjct: 1140 SMMYPQTSPCQNHECKHGVCFQPNAAGSDYLCKCHPGYTGK 1180

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	604
FB|FBgn0264089	1504	sli "slit" [Drosophila melanog	0.740	0.297	0.586	1.7e-201
WB|WBGene00004854	1410	slt-1 [Caenorhabditis elegans	0.710	0.304	0.444	2.1e-137
UNIPROTKB|F1Q3G2	1319	SLIT3 "Uncharacterized protein	0.721	0.330	0.448	1.8e-131
MGI|MGI:1315202	1523	Slit3 "slit homolog 3 (Drosoph	0.723	0.286	0.445	5.7e-131
UNIPROTKB|O75094	1523	SLIT3 "Slit homolog 3 protein"	0.723	0.286	0.440	1.5e-128
MGI|MGI:1315205	1521	Slit2 "slit homolog 2 (Drosoph	0.728	0.289	0.447	1.8e-127
UNIPROTKB|F1NR92	1425	SLIT2 "Uncharacterized protein	0.728	0.308	0.445	7.3e-127
UNIPROTKB|J3KNP3	1530	SLIT3 "Slit homolog 3 protein"	0.723	0.285	0.434	4.4e-126
RGD|69311	1523	Slit3 "slit homolog 3 (Drosoph	0.723	0.286	0.449	1.1e-119
UNIPROTKB|O88280	1523	Slit3 "Slit homolog 3 protein"	0.723	0.286	0.449	1.1e-119

FB|FBgn0264089 sli "slit" [Drosophila melanogaster (taxid:7227)]

 Score = 1573 (558.8 bits), Expect = 1.7e-201, Sum P(3) = 1.7e-201
 Identities = 271/462 (58%), Positives = 345/462 (74%)

Query:   147 LRRNQVTGIEDNAFE--GENDQGCLGDNYCPPKCTCTVRVLFYD-GRAGECYIAV----- 198
             +R  Q+  +  + F+   EN +GCLGD YCPP CTCT  V+     +  E    +     
Sbjct:   710 VRDVQIKDLPHSEFKCSSENSEGCLGDGYCPPSCTCTGTVVRCSRNQLKEIPRGIPAETS 769

Query:   199 ELF--SSRIRVSYYVGNYPVSTMYR-DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCI 255
             EL+  S+ I   +Y     + ++ R DLSNNQI  LSN+TF+ L+KLS LI+SYNKLQC+
Sbjct:   770 ELYLESNEIEQIHYERIRHLRSLTRLDLSNNQITILSNYTFANLTKLSTLIISYNKLQCL 829

Query:   256 DRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIGGNPLYCDCGLAWLSEWVKR 315
              R AL+GL +LR++SLHGN ISM+PEG+F DL ++TH+A+G NPLYCDCGL W S+W+K 
Sbjct:   830 QRHALSGLNNLRVLSLHGNRISMLPEGSFEDLKSLTHIALGSNPLYCDCGLKWFSDWIKL 889

Query:   316 DYVEPGIARCTEPASMRDKLLLTAPASSFQCKEKVSDEILSKCNACYKSPCTNQGVCEPL 375
             DYVEPGIARC EP  M+DKL+L+ P+SSF C+ +V ++IL+KCNAC++ PC NQ  C  L
Sbjct:   890 DYVEPGIARCAEPEQMKDKLILSTPSSSFVCRGRVRNDILAKCNACFEQPCQNQAQCVAL 949

Query:   376 PERQYQCRCTPGYHGQHCEFMIDACYGNPCRNSGTCKLLEEGRFNCECAPGYTGDRCEIN 435
             P+R+YQC C PGYHG+HCEFMIDACYGNPCRN+ TC +LEEGRF+C+CAPGYTG RCE N
Sbjct:   950 PQREYQCLCQPGYHGKHCEFMIDACYGNPCRNNATCTVLEEGRFSCQCAPGYTGARCETN 1009

Query:   436 IDDCLSH-KCENNATCVDLIQAYECRCAPGFQGEFCQTKTPFCAGEYNPCRNGARCLDHF 494
             IDDCL   KC+NNATC+D +++Y+C C PGF GEFC TK  FC+ E+NPC NGA+C+DHF
Sbjct:  1010 IDDCLGEIKCQNNATCIDGVESYKCECQPGFSGEFCDTKIQFCSPEFNPCANGAKCMDHF 1069

Query:   495 SHYTCECTPGFSGXXXXXXXXXXXXHMCQNGGTCVDGINDYTCKCEGDFVGKFCEIAPFV 554
             +HY+C+C  GF G            HMCQNGGTCVDGINDY C+C  D+ GK+CE    +
Sbjct:  1070 THYSCDCQAGFHGTNCTDNIDDCQNHMCQNGGTCVDGINDYQCRCPDDYTGKYCEGHNMI 1129

Query:   555 AMMYPQTSPCQHHDCKNGICFQP--QGSNDYLCKCAPGYSGK 594
             +MMYPQTSPCQ+H+CK+G+CFQP  QGS DYLC+C PGY+GK
Sbjct:  1130 SMMYPQTSPCQNHECKHGVCFQPNAQGS-DYLCRCHPGYTGK 1170

GO:0031012 "extracellular matrix" evidence=IDA

GO:0008347 "glial cell migration" evidence=IMP

GO:0050919 "negative chemotaxis" evidence=IMP

GO:0007509 "mesoderm migration involved in gastrulation" evidence=IMP

GO:0005578 "proteinaceous extracellular matrix" evidence=TAS

GO:0008078 "mesodermal cell migration" evidence=IMP

GO:0007411 "axon guidance" evidence=IGI;IMP;IPI

GO:0035385 "Roundabout signaling pathway" evidence=IGI

GO:0030182 "neuron differentiation" evidence=IMP

GO:0010632 "regulation of epithelial cell migration" evidence=IMP

GO:2000274 "regulation of epithelial cell migration, open tracheal system" evidence=IMP

GO:0005509 "calcium ion binding" evidence=IEA

GO:0007427 "epithelial cell migration, open tracheal system" evidence=IMP

GO:0016199 "axon midline choice point recognition" evidence=IMP

GO:0001764 "neuron migration" evidence=IMP

GO:0007432 "salivary gland boundary specification" evidence=IMP

GO:0035050 "embryonic heart tube development" evidence=IMP

GO:0022409 "positive regulation of cell-cell adhesion" evidence=IMP

GO:0071666 "Slit-Robo signaling complex" evidence=IDA

GO:0048495 "Roundabout binding" evidence=IPI

GO:0008201 "heparin binding" evidence=IDA

GO:0003151 "outflow tract morphogenesis" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0048813 "dendrite morphogenesis" evidence=IMP

GO:0008406 "gonad development" evidence=IMP

GO:0007502 "digestive tract mesoderm development" evidence=IMP

GO:0046331 "lateral inhibition" evidence=IMP

WB|WBGene00004854 slt-1 [Caenorhabditis elegans (taxid:6239)]

 Score = 1112 (396.5 bits), Expect = 2.1e-137, Sum P(3) = 2.1e-137
 Identities = 195/439 (44%), Positives = 272/439 (61%)

Query:   165 DQGCLGD-NYCPPKCTCTVRVLFYDGRAGECYIA-VELFSSRIRV-SYYVGNYPVSTMYR 221
             ++ C  D N CPPKC+C  RV+    +    + + +   ++ + + + Y+   P   + R
Sbjct:   667 EETCSDDSNLCPPKCSCLDRVVRCSNKNLTSFPSRIPFDTTELYLDANYINEIPAHDLNR 726

Query:   222 -------DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGN 274
                    DLS+N++  L N TFS L++LS LI+SYNKL+C+   A  GL +LRI+SLHGN
Sbjct:   727 LYSLTKLDLSHNRLISLENNTFSNLTRLSTLIISYNKLRCLQPLAFNGLNALRILSLHGN 786

Query:   275 DISMIPEGAFADLHAITHLAIGGNPLYCDCGLAWLSEWVKRDYVEPGIARCTEPASMRDK 334
             DIS +P+ AF++L +ITH+A+G N LYCDC +AW S+W+K  ++E GIARC  P ++ ++
Sbjct:   787 DISFLPQSAFSNLTSITHIAVGSNSLYCDCNMAWFSKWIKSKFIEAGIARCEYPNTVSNQ 846

Query:   335 LLLTAPASSFQCKEKVSDEILSKCNACYKSPCTNQGVCEPLPERQYQCRCTPGYHGQHCE 394
             LLLTA    F C  KV  ++ +KC+ C  SPC N  +CE    R+Y C CTPG++G HCE
Sbjct:   847 LLLTAQPYQFTCDSKVPTKLATKCDLCLNSPCKNNAICETTSSRKYTCNCTPGFYGVHCE 906

Query:   395 FMIDACYGNPCRNSGTCKLLEEGRFNCECAPGYTGDRCEINIDDCLSHKCENNATCVDLI 454
               IDACYG+PC N+ TCK+ + GRFNC C  G+ GD CE NIDDC++ KCEN   CVDLI
Sbjct:   907 NQIDACYGSPCLNNATCKVAQAGRFNCYCNKGFEGDYCEKNIDDCVNSKCENGGKCVDLI 966

Query:   455 QAYECRCAPGFQGEFCQTKTPFCAGEYNPCRNGARCLDHFSHYTCECTPGFSGXXXXXXX 514
              +Y C C   ++G+ C+ K  +C  + NPC N  +C+     Y+C C+PGF+G       
Sbjct:   967 NSYRCDCPMEYEGKHCEDKLEYCTKKLNPCENNGKCIPINGSYSCMCSPGFTGNNCETNI 1026

Query:   515 XXXXXHMCQNGGTCVDGINDYTCKCEGDFVGKFCEIAPFVAMMYPQTSPCQHHDCKNGIC 574
                    CQNGG+CVDGI  Y C C   + G++CEI P + M Y +T  CQ   C  G C
Sbjct:  1027 DDCKNVECQNGGSCVDGILSYDCLCRPGYAGQYCEIPPMMDMEYQKTDACQQSACGQGEC 1086

Query:   575 FQPQGSNDYLCKCAPGYSG 593
                Q S+D+ CKC  G+SG
Sbjct:  1087 VASQNSSDFTCKCHEGFSG 1105

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005576 "extracellular region" evidence=ISS

GO:0005102 "receptor binding" evidence=ISS;IPI

GO:0033563 "dorsal/ventral axon guidance" evidence=IGI;IMP

GO:0001764 "neuron migration" evidence=IMP

GO:0048843 "negative regulation of axon extension involved in axon guidance" evidence=IGI

UNIPROTKB|F1Q3G2 SLIT3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 1058 (377.5 bits), Expect = 1.8e-131, Sum P(2) = 1.8e-131
 Identities = 205/457 (44%), Positives = 267/457 (58%)

Query:   151 QVTGIEDNAFEGENDQGC-LGDNYCPPKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSY 209
             Q   I+D   EG ++  C LG   CP +CTC   V+    R    +   +     +   Y
Sbjct:   499 QDVAIQDFTCEGNDESSCQLGPR-CPEQCTCLETVVRCSNRG--LHTLPKGIPKDVTELY 555

Query:   210 YVGNY----P--VSTMYR----DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDA 259
               GN+    P  +S +      DLSNN IG L+N+TFS +S LS LILSYN+L+CI   A
Sbjct:   556 LEGNHLTAVPRELSALRHLTLIDLSNNSIGVLTNYTFSNMSHLSTLILSYNRLRCIPIHA 615

Query:   260 LAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIGGNPLYCDCGLAWLSEWVKRDYVE 319
               GL+SLR+++LHGNDIS +PEG+F+DL +++HLA+G NPL+CDC L WLSEWVK  Y E
Sbjct:   616 FDGLRSLRVLTLHGNDISSVPEGSFSDLTSLSHLALGTNPLHCDCSLRWLSEWVKAGYKE 675

Query:   320 PGIARCTEPASMRDKLLLTAPASSFQCKEKVSDEILSKCNACYKSPCTNQGVCEPLPERQ 379
             PGIARC+ P  M D+LLLT P   FQCK  V   I++KCNAC  SPC N G C   P   
Sbjct:   676 PGIARCSSPEPMADRLLLTTPTHRFQCKGPVDINIVAKCNACLSSPCKNNGTCSQDPVEL 735

Query:   380 YQCRCTPGYHGQHCEFMIDACYGNPCRNSGTCKLLEEGR--FNCECAPGYTGDRCEINID 437
             Y+C C  GY G+ C   I+ C  NPC++ GTC L E  +  F+C C  G+ G +CEIN D
Sbjct:   736 YRCTCPYGYKGKDCTVPINTCIQNPCQHGGTCHLSESHKDGFSCSCPLGFEGQQCEINPD 795

Query:   438 DCLSHKCENNATCVDLIQAYECRCAPGFQGEFCQTKTPFCAGEYNPCRNGARCLDHFSHY 497
             DC  + CENNATCVD I  Y C C P + GE C      C  E N C++ A+C+     +
Sbjct:   796 DCEDNDCENNATCVDGINNYVCVCPPNYTGELCDEVIDHCVPEINLCQHEAKCISLDKGF 855

Query:   498 TCECTPGFSGXXXXXXXXXXXXHMCQNGGTCVDGINDYTCKCEGDFVGKFCEIAPFVAMM 557
              CEC PG+SG            H C++G  CVD +N YTC C   F G  CE  P + ++
Sbjct:   856 RCECLPGYSGKLCEVDNDDCVAHKCRHGAQCVDAVNGYTCICPQGFSGLLCEQPPPMVLL 915

Query:   558 YPQTSPCQHHDCKNGI-CFQPQGSNDYLCKCAPGYSG 593
               QTSPC  ++C+NG  C   Q   +  C+C PG++G
Sbjct:   916 --QTSPCDQYECQNGAQCIVVQ--QEPTCRCPPGFAG 948

GO:0070100 "negative regulation of chemokine-mediated signaling pathway" evidence=IEA

GO:0061364 "apoptotic process involved in luteolysis" evidence=IEA

GO:0051414 "response to cortisol stimulus" evidence=IEA

GO:0050919 "negative chemotaxis" evidence=IEA

GO:0048846 "axon extension involved in axon guidance" evidence=IEA

GO:0048495 "Roundabout binding" evidence=IEA

GO:0035385 "Roundabout signaling pathway" evidence=IEA

GO:0032870 "cellular response to hormone stimulus" evidence=IEA

GO:0030308 "negative regulation of cell growth" evidence=IEA

GO:0010629 "negative regulation of gene expression" evidence=IEA

GO:0009887 "organ morphogenesis" evidence=IEA

GO:0008285 "negative regulation of cell proliferation" evidence=IEA

GO:0005615 "extracellular space" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

MGI|MGI:1315202 Slit3 "slit homolog 3 (Drosophila)" [Mus musculus (taxid:10090)]

 Score = 1060 (378.2 bits), Expect = 5.7e-131, Sum P(2) = 5.7e-131
 Identities = 203/456 (44%), Positives = 263/456 (57%)

Query:   151 QVTGIEDNAFEGENDQGCLGDNYCPPKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYY 210
             Q   I+D   +G  +  C     CP +CTC   V+    R    +   +     +   Y 
Sbjct:   702 QDVAIQDFTCDGNEESSCQLSPRCPEQCTCVETVVRCSNRG--LHALPKGMPKDVTELYL 759

Query:   211 VGNYPVS-----TMYR-----DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDAL 260
              GN+  +     + +R     DLSNN I  L+N TFS +S LS LILSYN+L+CI   A 
Sbjct:   760 EGNHLTAVPKELSAFRQLTLIDLSNNSISMLTNHTFSNMSHLSTLILSYNRLRCIPVHAF 819

Query:   261 AGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIGGNPLYCDCGLAWLSEWVKRDYVEP 320
              GL+SLR+++LHGNDIS +PEG+F DL +++HLA+G NPL+CDC L WLSEWVK  Y EP
Sbjct:   820 NGLRSLRVLTLHGNDISSVPEGSFNDLTSLSHLALGTNPLHCDCSLRWLSEWVKAGYKEP 879

Query:   321 GIARCTEPASMRDKLLLTAPASSFQCKEKVSDEILSKCNACYKSPCTNQGVCEPLPERQY 380
             GIARC+ P SM D+LLLT P   FQCK  V   I++KCNAC  SPC N G C   P  QY
Sbjct:   880 GIARCSSPESMADRLLLTTPTHRFQCKGPVDINIVAKCNACLSSPCKNNGTCSQDPVEQY 939

Query:   381 QCRCTPGYHGQHCEFMIDACYGNPCRNSGTCKLLEEGR--FNCECAPGYTGDRCEINIDD 438
             +C C   Y G+ C   I+ C  NPC + GTC L E  R  F+C C  G+ G RCEIN DD
Sbjct:   940 RCTCPYSYKGKDCTVPINTCVQNPCEHGGTCHLSENLRDGFSCSCPLGFEGQRCEINPDD 999

Query:   439 CLSHKCENNATCVDLIQAYECRCAPGFQGEFCQTKTPFCAGEYNPCRNGARCLDHFSHYT 498
             C  + CEN+ATCVD I  Y C C P + GE C     +C  E N C++ A+C+     + 
Sbjct:  1000 CEDNDCENSATCVDGINNYACLCPPNYTGELCDEVIDYCVPEMNLCQHEAKCISLDKGFR 1059

Query:   499 CECTPGFSGXXXXXXXXXXXXHMCQNGGTCVDGINDYTCKCEGDFVGKFCEIAPFVAMMY 558
             CEC PG+SG            H C++G  CVD +N YTC C   F G FCE  P + ++ 
Sbjct:  1060 CECVPGYSGKLCETNNDDCVAHKCRHGAQCVDEVNGYTCICPQGFSGLFCEHPPPMVLL- 1118

Query:   559 PQTSPCQHHDCKNGI-CFQPQGSNDYLCKCAPGYSG 593
              QTSPC  ++C+NG  C   Q   +  C+C PG++G
Sbjct:  1119 -QTSPCDQYECQNGAQCIVVQ--QEPTCRCPPGFAG 1151

GO:0005102 "receptor binding" evidence=TAS

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005576 "extracellular region" evidence=IEA

GO:0005615 "extracellular space" evidence=ISO;IDA

GO:0005739 "mitochondrion" evidence=ISO

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0007399 "nervous system development" evidence=IEA

GO:0007411 "axon guidance" evidence=ISO;IDA

GO:0008285 "negative regulation of cell proliferation" evidence=IGI

GO:0009887 "organ morphogenesis" evidence=IGI;IMP

GO:0010629 "negative regulation of gene expression" evidence=IGI

GO:0016020 "membrane" evidence=ISO

GO:0030154 "cell differentiation" evidence=IEA

GO:0030308 "negative regulation of cell growth" evidence=ISO

GO:0035385 "Roundabout signaling pathway" evidence=ISO

GO:0048495 "Roundabout binding" evidence=ISO

GO:0048846 "axon extension involved in axon guidance" evidence=ISO

GO:0050919 "negative chemotaxis" evidence=ISO

GO:0070100 "negative regulation of chemokine-mediated signaling pathway" evidence=ISO

UNIPROTKB|O75094 SLIT3 "Slit homolog 3 protein" [Homo sapiens (taxid:9606)]

 Score = 1042 (371.9 bits), Expect = 1.5e-128, Sum P(2) = 1.5e-128
 Identities = 201/456 (44%), Positives = 261/456 (57%)

Query:   151 QVTGIEDNAFEGENDQGCLGDNYCPPKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYY 210
             Q   I+D   +G  +  C     CP +CTC   V+    +              +   Y 
Sbjct:   702 QDVAIQDFTCDGNEESSCQLSPRCPEQCTCMETVVRCSNKGLRAL--PRGMPKDVTELYL 759

Query:   211 VGNY----P--VSTMYR----DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDAL 260
              GN+    P  +S +      DLSNN I  L+N+TFS +S LS LILSYN+L+CI   A 
Sbjct:   760 EGNHLTAVPRELSALRHLTLIDLSNNSISMLTNYTFSNMSHLSTLILSYNRLRCIPVHAF 819

Query:   261 AGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIGGNPLYCDCGLAWLSEWVKRDYVEP 320
              GL+SLR+++LHGNDIS +PEG+F DL +++HLA+G NPL+CDC L WLSEWVK  Y EP
Sbjct:   820 NGLRSLRVLTLHGNDISSVPEGSFNDLTSLSHLALGTNPLHCDCSLRWLSEWVKAGYKEP 879

Query:   321 GIARCTEPASMRDKLLLTAPASSFQCKEKVSDEILSKCNACYKSPCTNQGVCEPLPERQY 380
             GIARC+ P  M D+LLLT P   FQCK  V   I++KCNAC  SPC N G C   P   Y
Sbjct:   880 GIARCSSPEPMADRLLLTTPTHRFQCKGPVDINIVAKCNACLSSPCKNNGTCTQDPVELY 939

Query:   381 QCRCTPGYHGQHCEFMIDACYGNPCRNSGTCKLLEEGR--FNCECAPGYTGDRCEINIDD 438
             +C C   Y G+ C   I+ C  NPC++ GTC L +  +  F+C C  G+ G RCEIN DD
Sbjct:   940 RCACPYSYKGKDCTVPINTCIQNPCQHGGTCHLSDSHKDGFSCSCPLGFEGQRCEINPDD 999

Query:   439 CLSHKCENNATCVDLIQAYECRCAPGFQGEFCQTKTPFCAGEYNPCRNGARCLDHFSHYT 498
             C  + CENNATCVD I  Y C C P + GE C      C  E N C++ A+C+     ++
Sbjct:  1000 CEDNDCENNATCVDGINNYVCICPPNYTGELCDEVIDHCVPELNLCQHEAKCIPLDKGFS 1059

Query:   499 CECTPGFSGXXXXXXXXXXXXHMCQNGGTCVDGINDYTCKCEGDFVGKFCEIAPFVAMMY 558
             CEC PG+SG            H C++G  CVD IN YTC C   F G FCE  P + ++ 
Sbjct:  1060 CECVPGYSGKLCETDNDDCVAHKCRHGAQCVDTINGYTCTCPQGFSGPFCEHPPPMVLL- 1118

Query:   559 PQTSPCQHHDCKNGI-CFQPQGSNDYLCKCAPGYSG 593
              QTSPC  ++C+NG  C   Q   +  C+C PG++G
Sbjct:  1119 -QTSPCDQYECQNGAQCIVVQ--QEPTCRCPPGFAG 1151

GO:0008285 "negative regulation of cell proliferation" evidence=IEA

GO:0009887 "organ morphogenesis" evidence=IEA

GO:0010629 "negative regulation of gene expression" evidence=IEA

GO:0005509 "calcium ion binding" evidence=NAS

GO:0005739 "mitochondrion" evidence=NAS

GO:0005615 "extracellular space" evidence=IDA

GO:0048846 "axon extension involved in axon guidance" evidence=IDA

GO:0050919 "negative chemotaxis" evidence=IDA

GO:0061364 "apoptotic process involved in luteolysis" evidence=IEP

GO:0032870 "cellular response to hormone stimulus" evidence=IEP

GO:0051414 "response to cortisol stimulus" evidence=IEP

GO:0048495 "Roundabout binding" evidence=IPI

GO:0021834 "chemorepulsion involved in embryonic olfactory bulb interneuron precursor migration" evidence=IDA

GO:0007411 "axon guidance" evidence=IDA;TAS

GO:0070100 "negative regulation of chemokine-mediated signaling pathway" evidence=IMP

GO:0030308 "negative regulation of cell growth" evidence=IMP

GO:0035385 "Roundabout signaling pathway" evidence=IMP

MGI|MGI:1315205 Slit2 "slit homolog 2 (Drosophila)" [Mus musculus (taxid:10090)]

 Score = 1069 (381.4 bits), Expect = 1.8e-127, Sum P(3) = 1.8e-127
 Identities = 205/458 (44%), Positives = 271/458 (59%)

Query:   151 QVTGIED-NAFEGENDQGCLGDNYCPPKCTCTVRVLFYDGRA------GECYIAVELF-- 201
             Q   I+D    +G +D  C   + CP +CTC   V+    +       G      EL+  
Sbjct:   695 QDVAIQDFTCDDGNDDNSCSPLSRCPSECTCLDTVVRCSNKGLKVLPKGIPKDVTELYLD 754

Query:   202 -SSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDAL 260
              +    V   + NY   T+  DLSNN+I  LSN +FS +++L  LILSYN+L+CI     
Sbjct:   755 GNQFTLVPKELSNYKHLTLI-DLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTF 813

Query:   261 AGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIGGNPLYCDCGLAWLSEWVKRDYVEP 320
              GLKSLR++SLHGNDIS++PEGAF DL A++HLAIG NPLYCDC + WLS+WVK +Y EP
Sbjct:   814 DGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCDCNMQWLSDWVKSEYKEP 873

Query:   321 GIARCTEPASMRDKLLLTAPASSFQCKEKVSDEILSKCNACYKSPCTNQGVCEPLPERQY 380
             GIARC  P  M DKLLLT P+  F C+  V   I +KCN C  +PC N G C   P   Y
Sbjct:   874 GIARCAGPGEMADKLLLTTPSKKFTCQGPVDITIQAKCNPCLSNPCKNDGTCNNDPVDFY 933

Query:   381 QCRCTPGYHGQHCEFMIDACYGNPCRNSGTCKLLE--EGRFNCECAPGYTGDRCEINIDD 438
             +C C  G+ GQ C+  I AC  NPC++ GTC L E     F C CA G+ G+ CE+NIDD
Sbjct:   934 RCTCPYGFKGQDCDVPIHACISNPCKHGGTCHLKEGENAGFWCTCADGFEGENCEVNIDD 993

Query:   439 CLSHKCENNATCVDLIQAYECRCAPGFQGEFCQTKTPFCAGEYNPCRNGARCLDHFSHYT 498
             C  + CENN+TCVD I  Y C C P + GE C+ K  FCA + NPC++ ++C+     + 
Sbjct:   994 CEDNDCENNSTCVDGINNYTCLCPPEYTGELCEEKLDFCAQDLNPCQHDSKCILTPKGFK 1053

Query:   499 CECTPGFSGXXXXXXXXXXXXHMCQNGGTCVDGINDYTCKCEGDFVGKFCEIAPFVAMMY 558
             C+CTPG+ G            + C+NG  C D +N YTC C   + G FCE +P   M+ 
Sbjct:  1054 CDCTPGYIGEHCDIDFDDCQDNKCKNGAHCTDAVNGYTCVCPEGYSGLFCEFSP--PMVL 1111

Query:   559 PQTSPCQHHDCKNGI-CFQPQGSNDYLCKCAPGYSGKE 595
             P+TSPC + DC+NG  C      N+ +C+C PGY G++
Sbjct:  1112 PRTSPCDNFDCQNGAQCIIR--INEPICQCLPGYLGEK 1147

GO:0001656 "metanephros development" evidence=IMP

GO:0001657 "ureteric bud development" evidence=ISO

GO:0001701 "in utero embryonic development" evidence=IMP

GO:0001933 "negative regulation of protein phosphorylation" evidence=ISO

GO:0002042 "cell migration involved in sprouting angiogenesis" evidence=ISO

GO:0002689 "negative regulation of leukocyte chemotaxis" evidence=ISO

GO:0005095 "GTPase inhibitor activity" evidence=ISO

GO:0005102 "receptor binding" evidence=TAS

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005576 "extracellular region" evidence=IEA

GO:0005615 "extracellular space" evidence=ISO;IDA

GO:0005737 "cytoplasm" evidence=ISO

GO:0005886 "plasma membrane" evidence=ISO

GO:0006935 "chemotaxis" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0007399 "nervous system development" evidence=IEA

GO:0007409 "axonogenesis" evidence=IMP;IDA

GO:0007411 "axon guidance" evidence=ISO;IGI;IMP;IDA

GO:0008045 "motor neuron axon guidance" evidence=ISO

GO:0008201 "heparin binding" evidence=ISO

GO:0008285 "negative regulation of cell proliferation" evidence=IGI

GO:0009986 "cell surface" evidence=ISO

GO:0010593 "negative regulation of lamellipodium assembly" evidence=ISO

GO:0010596 "negative regulation of endothelial cell migration" evidence=ISO

GO:0010629 "negative regulation of gene expression" evidence=IGI

GO:0014912 "negative regulation of smooth muscle cell migration" evidence=ISO

GO:0016337 "cell-cell adhesion" evidence=IGI;IMP

GO:0021772 "olfactory bulb development" evidence=IGI

GO:0021836 "chemorepulsion involved in postnatal olfactory bulb interneuron migration" evidence=ISO

GO:0021972 "corticospinal neuron axon guidance through spinal cord" evidence=ISO

GO:0022029 "telencephalon cell migration" evidence=IGI

GO:0030154 "cell differentiation" evidence=IEA

GO:0030308 "negative regulation of cell growth" evidence=ISO

GO:0030336 "negative regulation of cell migration" evidence=ISO

GO:0030837 "negative regulation of actin filament polymerization" evidence=ISO

GO:0031290 "retinal ganglion cell axon guidance" evidence=ISO;IGI;IMP

GO:0033563 "dorsal/ventral axon guidance" evidence=IGI;IMP

GO:0035385 "Roundabout signaling pathway" evidence=ISO

GO:0042803 "protein homodimerization activity" evidence=ISO

GO:0043065 "positive regulation of apoptotic process" evidence=ISO

GO:0043086 "negative regulation of catalytic activity" evidence=ISO

GO:0043116 "negative regulation of vascular permeability" evidence=ISO

GO:0043237 "laminin-1 binding" evidence=ISO

GO:0043394 "proteoglycan binding" evidence=ISO

GO:0043395 "heparan sulfate proteoglycan binding" evidence=ISO

GO:0045499 "chemorepellent activity" evidence=IMP

GO:0048495 "Roundabout binding" evidence=ISO

GO:0048754 "branching morphogenesis of an epithelial tube" evidence=ISO

GO:0048812 "neuron projection morphogenesis" evidence=IGI;IMP

GO:0048846 "axon extension involved in axon guidance" evidence=ISO

GO:0050728 "negative regulation of inflammatory response" evidence=ISO

GO:0050919 "negative chemotaxis" evidence=ISO;IMP

GO:0050929 "induction of negative chemotaxis" evidence=ISO

GO:0051058 "negative regulation of small GTPase mediated signal transduction" evidence=ISO

GO:0060603 "mammary gland duct morphogenesis" evidence=IGI;IMP

GO:0060763 "mammary duct terminal end bud growth" evidence=IMP

GO:0070100 "negative regulation of chemokine-mediated signaling pathway" evidence=ISO

GO:0071504 "cellular response to heparin" evidence=ISO

GO:0071672 "negative regulation of smooth muscle cell chemotaxis" evidence=ISO

GO:0071676 "negative regulation of mononuclear cell migration" evidence=ISO

GO:0090024 "negative regulation of neutrophil chemotaxis" evidence=ISO

GO:0090027 "negative regulation of monocyte chemotaxis" evidence=ISO

GO:0090260 "negative regulation of retinal ganglion cell axon guidance" evidence=ISO

GO:0090288 "negative regulation of cellular response to growth factor stimulus" evidence=ISO

UNIPROTKB|F1NR92 SLIT2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 1072 (382.4 bits), Expect = 7.3e-127, Sum P(3) = 7.3e-127
 Identities = 204/458 (44%), Positives = 272/458 (59%)

Query:   151 QVTGIED-NAFEGENDQGCLGDNYCPPKCTCTVRVLFYDGRA------GECYIAVELF-- 201
             Q   I+D    +G +D  C   + CP +CTC   V+    +       G      EL+  
Sbjct:   599 QDVAIQDFTCDDGNDDNSCSPLSRCPAECTCLDTVVRCSNKGLKALPKGIPKDVTELYLD 658

Query:   202 -SSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDAL 260
              +    V   + NY   T+  DLSNN+I  LSN +FS +++L  LILSYN+L+CI     
Sbjct:   659 GNQFTLVPKELSNYKHLTLI-DLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPARTF 717

Query:   261 AGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIGGNPLYCDCGLAWLSEWVKRDYVEP 320
              GLKSLR++SLHGNDIS++PEGAF DL A++HLAIG NPLYCDC + WLS+WVK +Y EP
Sbjct:   718 DGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCDCNMQWLSDWVKSEYKEP 777

Query:   321 GIARCTEPASMRDKLLLTAPASSFQCKEKVSDEILSKCNACYKSPCTNQGVCEPLPERQY 380
             GIARC  P  M DKLLLT P+  F C+  V   IL+KCN C  +PC N G C   P   Y
Sbjct:   778 GIARCAGPGEMADKLLLTTPSKKFTCQGPVDVNILAKCNPCLSNPCKNDGTCNNDPVDFY 837

Query:   381 QCRCTPGYHGQHCEFMIDACYGNPCRNSGTCKLLEEGR--FNCECAPGYTGDRCEINIDD 438
             +C C  G+ GQ C+  I AC  NPC + GTC L E  +  F C CA G+ G+ CEIN+DD
Sbjct:   838 RCTCPYGFKGQDCDIPIHACISNPCNHGGTCHLKEGEKDGFWCTCADGFEGENCEINVDD 897

Query:   439 CLSHKCENNATCVDLIQAYECRCAPGFQGEFCQTKTPFCAGEYNPCRNGARCLDHFSHYT 498
             C  + CENN+TCVD I  Y C C P + GE C+ K  FCA   NPC++ ++C+     Y 
Sbjct:   898 CEDNDCENNSTCVDGINNYTCLCPPEYTGELCEEKLDFCAQNLNPCQHDSKCILTPKGYK 957

Query:   499 CECTPGFSGXXXXXXXXXXXXHMCQNGGTCVDGINDYTCKCEGDFVGKFCEIAPFVAMMY 558
             C+CTPG+ G            + C+NG  C D +N YTC C   + G FCE +P   M+ 
Sbjct:   958 CDCTPGYVGEHCDIDFDDCQDNKCKNGAQCTDAVNGYTCICPEGYSGLFCEFSP--PMVL 1015

Query:   559 PQTSPCQHHDCKNGI-CFQPQGSNDYLCKCAPGYSGKE 595
             P+TSPC +++C+NG  C   +  ++ +C+C  GY G++
Sbjct:  1016 PRTSPCDNYECQNGAQCIVKE--SEPICQCLSGYQGEK 1051

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005576 "extracellular region" evidence=IEA

UNIPROTKB|J3KNP3 SLIT3 "Slit homolog 3 protein" [Homo sapiens (taxid:9606)]

 Score = 1021 (364.5 bits), Expect = 4.4e-126, Sum P(2) = 4.4e-126
 Identities = 201/463 (43%), Positives = 261/463 (56%)

Query:   151 QVTGIEDNAFEGENDQGCLGDNYCPPKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYY 210
             Q   I+D   +G  +  C     CP +CTC   V+    +              +   Y 
Sbjct:   702 QDVAIQDFTCDGNEESSCQLSPRCPEQCTCMETVVRCSNKGLRAL--PRGMPKDVTELYL 759

Query:   211 VGNY----P--VSTMYR----DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDAL 260
              GN+    P  +S +      DLSNN I  L+N+TFS +S LS LILSYN+L+CI   A 
Sbjct:   760 EGNHLTAVPRELSALRHLTLIDLSNNSISMLTNYTFSNMSHLSTLILSYNRLRCIPVHAF 819

Query:   261 AGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIGGNPLYCDCGLAWLSEWVKRDYVEP 320
              GL+SLR+++LHGNDIS +PEG+F DL +++HLA+G NPL+CDC L WLSEWVK  Y EP
Sbjct:   820 NGLRSLRVLTLHGNDISSVPEGSFNDLTSLSHLALGTNPLHCDCSLRWLSEWVKAGYKEP 879

Query:   321 GIARCTEPASMRDKLLLTAPASSFQCKE-------KVSDEILSKCNACYKSPCTNQGVCE 373
             GIARC+ P  M D+LLLT P   FQCK         V   I++KCNAC  SPC N G C 
Sbjct:   880 GIARCSSPEPMADRLLLTTPTHRFQCKVLWFCCPGPVDINIVAKCNACLSSPCKNNGTCT 939

Query:   374 PLPERQYQCRCTPGYHGQHCEFMIDACYGNPCRNSGTCKLLEEGR--FNCECAPGYTGDR 431
               P   Y+C C   Y G+ C   I+ C  NPC++ GTC L +  +  F+C C  G+ G R
Sbjct:   940 QDPVELYRCACPYSYKGKDCTVPINTCIQNPCQHGGTCHLSDSHKDGFSCSCPLGFEGQR 999

Query:   432 CEINIDDCLSHKCENNATCVDLIQAYECRCAPGFQGEFCQTKTPFCAGEYNPCRNGARCL 491
             CEIN DDC  + CENNATCVD I  Y C C P + GE C      C  E N C++ A+C+
Sbjct:  1000 CEINPDDCEDNDCENNATCVDGINNYVCICPPNYTGELCDEVIDHCVPELNLCQHEAKCI 1059

Query:   492 DHFSHYTCECTPGFSGXXXXXXXXXXXXHMCQNGGTCVDGINDYTCKCEGDFVGKFCEIA 551
                  ++CEC PG+SG            H C++G  CVD IN YTC C   F G FCE  
Sbjct:  1060 PLDKGFSCECVPGYSGKLCETDNDDCVAHKCRHGAQCVDTINGYTCTCPQGFSGPFCEHP 1119

Query:   552 PFVAMMYPQTSPCQHHDCKNGI-CFQPQGSNDYLCKCAPGYSG 593
             P + ++  QTSPC  ++C+NG  C   Q   +  C+C PG++G
Sbjct:  1120 PPMVLL--QTSPCDQYECQNGAQCIVVQ--QEPTCRCPPGFAG 1158

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005576 "extracellular region" evidence=IEA

RGD|69311 Slit3 "slit homolog 3 (Drosophila)" [Rattus norvegicus (taxid:10116)]

 Score = 1067 (380.7 bits), Expect = 1.1e-119, Sum P(2) = 1.1e-119
 Identities = 205/456 (44%), Positives = 265/456 (58%)

Query:   151 QVTGIEDNAFEGENDQGCLGDNYCPPKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYY 210
             Q   I+D   EG  +  C     CP +CTC   V+    R    +   +     +   Y 
Sbjct:   702 QDVAIQDFTCEGNEENSCQLSPRCPEQCTCVETVVRCSNRG--LHTLPKGMPKDVTELYL 759

Query:   211 VGNY----P--VSTMYR----DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDAL 260
              GN+    P  +ST  +    DLSNN I  L+N TFS +S LS LILSYN+L+CI   A 
Sbjct:   760 EGNHLTAVPKELSTFRQLTLIDLSNNSISMLTNHTFSNMSHLSTLILSYNRLRCIPVHAF 819

Query:   261 AGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIGGNPLYCDCGLAWLSEWVKRDYVEP 320
              GL+SLR+++LHGNDIS +PEG+F DL +++HLA+G NPL+CDC L WLSEW+K  Y EP
Sbjct:   820 NGLRSLRVLTLHGNDISSVPEGSFNDLTSLSHLALGINPLHCDCSLRWLSEWIKAGYKEP 879

Query:   321 GIARCTEPASMRDKLLLTAPASSFQCKEKVSDEILSKCNACYKSPCTNQGVCEPLPERQY 380
             GIARC+ P SM D+LLLT P   FQCK  V   I++KCNAC  SPC N G C   P  QY
Sbjct:   880 GIARCSSPESMADRLLLTTPTHRFQCKGPVDINIVAKCNACLSSPCKNNGTCSQDPVEQY 939

Query:   381 QCRCTPGYHGQHCEFMIDACYGNPCRNSGTCKLLEEGR--FNCECAPGYTGDRCEINIDD 438
             +C C   Y G+ C   I+ C  NPC++ GTC L E  R  F+C C  G+ G RCEIN DD
Sbjct:   940 RCTCPYSYKGKDCTVPINTCVQNPCQHGGTCHLSESHRDGFSCSCPLGFEGQRCEINPDD 999

Query:   439 CLSHKCENNATCVDLIQAYECRCAPGFQGEFCQTKTPFCAGEYNPCRNGARCLDHFSHYT 498
             C  + CEN+ATCVD I  Y C C P + GE C     +C  E N C++ A+C+     + 
Sbjct:  1000 CEDNDCENSATCVDGINNYACVCPPNYTGELCDEVIDYCVPEMNLCQHEAKCISLDKGFR 1059

Query:   499 CECTPGFSGXXXXXXXXXXXXHMCQNGGTCVDGINDYTCKCEGDFVGKFCEIAPFVAMMY 558
             CEC PG+SG            H C++G  CVD +N YTC C   F G FCE  P + ++ 
Sbjct:  1060 CECVPGYSGKLCETDNDDCVAHKCRHGAQCVDAVNGYTCICPQGFSGLFCEHPPPMVLL- 1118

Query:   559 PQTSPCQHHDCKNGI-CFQPQGSNDYLCKCAPGYSG 593
              QTSPC  ++C+NG  C   Q   +  C+C PG++G
Sbjct:  1119 -QTSPCDQYECQNGAQCIVVQ--QEPTCRCPPGFAG 1151

GO:0003674 "molecular_function" evidence=ND

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005576 "extracellular region" evidence=IEA

GO:0005615 "extracellular space" evidence=IEA;ISO

GO:0007411 "axon guidance" evidence=ISO

GO:0007420 "brain development" evidence=IEP

GO:0008285 "negative regulation of cell proliferation" evidence=IEA;ISO

GO:0009887 "organ morphogenesis" evidence=IEA;ISO

GO:0010629 "negative regulation of gene expression" evidence=IEA;ISO

GO:0016020 "membrane" evidence=IDA

GO:0021510 "spinal cord development" evidence=IEP

GO:0030154 "cell differentiation" evidence=IEA

GO:0030308 "negative regulation of cell growth" evidence=IEA;ISO

GO:0032870 "cellular response to hormone stimulus" evidence=IEA;ISO

GO:0035385 "Roundabout signaling pathway" evidence=IEA;ISO

GO:0048495 "Roundabout binding" evidence=IEA;ISO

GO:0048846 "axon extension involved in axon guidance" evidence=IEA;ISO

GO:0050919 "negative chemotaxis" evidence=IEA;ISO

GO:0051414 "response to cortisol stimulus" evidence=IEA;ISO

GO:0061364 "apoptotic process involved in luteolysis" evidence=IEA;ISO

GO:0070100 "negative regulation of chemokine-mediated signaling pathway" evidence=IEA;ISO

GO:0005739 "mitochondrion" evidence=IDA

GO:0021834 "chemorepulsion involved in embryonic olfactory bulb interneuron precursor migration" evidence=ISO

UNIPROTKB|O88280 Slit3 "Slit homolog 3 protein" [Rattus norvegicus (taxid:10116)]

 Score = 1067 (380.7 bits), Expect = 1.1e-119, Sum P(2) = 1.1e-119
 Identities = 205/456 (44%), Positives = 265/456 (58%)

Query:   151 QVTGIEDNAFEGENDQGCLGDNYCPPKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYY 210
             Q   I+D   EG  +  C     CP +CTC   V+    R    +   +     +   Y 
Sbjct:   702 QDVAIQDFTCEGNEENSCQLSPRCPEQCTCVETVVRCSNRG--LHTLPKGMPKDVTELYL 759

Query:   211 VGNY----P--VSTMYR----DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDAL 260
              GN+    P  +ST  +    DLSNN I  L+N TFS +S LS LILSYN+L+CI   A 
Sbjct:   760 EGNHLTAVPKELSTFRQLTLIDLSNNSISMLTNHTFSNMSHLSTLILSYNRLRCIPVHAF 819

Query:   261 AGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIGGNPLYCDCGLAWLSEWVKRDYVEP 320
              GL+SLR+++LHGNDIS +PEG+F DL +++HLA+G NPL+CDC L WLSEW+K  Y EP
Sbjct:   820 NGLRSLRVLTLHGNDISSVPEGSFNDLTSLSHLALGINPLHCDCSLRWLSEWIKAGYKEP 879

Query:   321 GIARCTEPASMRDKLLLTAPASSFQCKEKVSDEILSKCNACYKSPCTNQGVCEPLPERQY 380
             GIARC+ P SM D+LLLT P   FQCK  V   I++KCNAC  SPC N G C   P  QY
Sbjct:   880 GIARCSSPESMADRLLLTTPTHRFQCKGPVDINIVAKCNACLSSPCKNNGTCSQDPVEQY 939

Query:   381 QCRCTPGYHGQHCEFMIDACYGNPCRNSGTCKLLEEGR--FNCECAPGYTGDRCEINIDD 438
             +C C   Y G+ C   I+ C  NPC++ GTC L E  R  F+C C  G+ G RCEIN DD
Sbjct:   940 RCTCPYSYKGKDCTVPINTCVQNPCQHGGTCHLSESHRDGFSCSCPLGFEGQRCEINPDD 999

Query:   439 CLSHKCENNATCVDLIQAYECRCAPGFQGEFCQTKTPFCAGEYNPCRNGARCLDHFSHYT 498
             C  + CEN+ATCVD I  Y C C P + GE C     +C  E N C++ A+C+     + 
Sbjct:  1000 CEDNDCENSATCVDGINNYACVCPPNYTGELCDEVIDYCVPEMNLCQHEAKCISLDKGFR 1059

Query:   499 CECTPGFSGXXXXXXXXXXXXHMCQNGGTCVDGINDYTCKCEGDFVGKFCEIAPFVAMMY 558
             CEC PG+SG            H C++G  CVD +N YTC C   F G FCE  P + ++ 
Sbjct:  1060 CECVPGYSGKLCETDNDDCVAHKCRHGAQCVDAVNGYTCICPQGFSGLFCEHPPPMVLL- 1118

Query:   559 PQTSPCQHHDCKNGI-CFQPQGSNDYLCKCAPGYSG 593
              QTSPC  ++C+NG  C   Q   +  C+C PG++G
Sbjct:  1119 -QTSPCDQYECQNGAQCIVVQ--QEPTCRCPPGFAG 1151

GO:0005509 "calcium ion binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P24014	SLIT_DROME	No assigned EC number	0.6038	0.7400	0.2972	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	604
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	7e-14
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	4e-12
TIGR00864	2740	TIGR00864, PCC, polycystin cation channel protein	5e-10
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	3e-08
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	2e-07
smart00082	51	smart00082, LRRCT, Leucine rich repeat C-terminal	1e-06
smart00013	33	smart00013, LRRNT, Leucine rich repeat N-terminal	8e-06
cd00054	38	cd00054, EGF_CA, Calcium-binding EGF-like domain,	9e-06
cd00054	38	cd00054, EGF_CA, Calcium-binding EGF-like domain,	2e-05
cd00054	38	cd00054, EGF_CA, Calcium-binding EGF-like domain,	5e-05
cd00054	38	cd00054, EGF_CA, Calcium-binding EGF-like domain,	7e-05
pfam01462	28	pfam01462, LRRNT, Leucine rich repeat N-terminal d	8e-05
pfam12799	43	pfam12799, LRR_4, Leucine Rich repeats (2 copies)	9e-05
pfam12799	43	pfam12799, LRR_4, Leucine Rich repeats (2 copies)	1e-04
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	2e-04
smart00179	39	smart00179, EGF_CA, Calcium-binding EGF-like domai	5e-04
smart00179	39	smart00179, EGF_CA, Calcium-binding EGF-like domai	8e-04
smart00370	24	smart00370, LRR, Leucine-rich repeats, outliers	0.001
smart00369	24	smart00369, LRR_TYP, Leucine-rich repeats, typical	0.001
pfam12799	43	pfam12799, LRR_4, Leucine Rich repeats (2 copies)	0.002
smart00179	39	smart00179, EGF_CA, Calcium-binding EGF-like domai	0.003
pfam00008	32	pfam00008, EGF, EGF-like domain	0.004

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 66.0 bits (162), Expect = 7e-14
 Identities = 23/55 (41%), Positives = 32/55 (58%)

Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDI 276
           DLSNN++  + +  F  L  L  L LS N L  I  +A +GL SLR + L GN++
Sbjct: 6   DLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 61.0 bits (149), Expect = 4e-12
 Identities = 22/60 (36%), Positives = 34/60 (56%)

Query: 241 KLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIGGNPL 300
            L  L LS N+L  I   A  GL +L+++ L GN+++ I   AF+ L ++  L + GN L
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|188093 TIGR00864, PCC, polycystin cation channel protein

 Score = 62.8 bits (152), Expect = 5e-10
 Identities = 29/82 (35%), Positives = 41/82 (50%), Gaps = 3/82 (3%)

Query: 271 LHGNDISMIPEGAFADLHAITHLAIGGNPLYCDCGLAWLSEWVKRDYV---EPGIARCTE 327
           +  N IS I EG  A+L  ++ + + GNP  CDCGLA L  W +   V   +P  A C  
Sbjct: 2   ISNNKISTIEEGICANLCNLSEIDLSGNPFECDCGLARLPRWAEEKGVKVRQPEAALCAG 61

Query: 328 PASMRDKLLLTAPASSFQCKEK 349
           P ++  + LL  P     C E+
Sbjct: 62  PGALAGQPLLGIPLLDSGCDEE 83

The Polycystin Cation Channel (PCC) Family (TC 1.A.5) Polycystin is a huge protein of 4303aas. Its repeated leucine-rich (LRR) segment is found in many proteins. It contains 16 polycystic kidney disease (PKD) domains, one LDL-receptor class A domain, one C-type lectin family domain, and 16-18 putative TMSs in positions between residues 2200 and 4100. Polycystin-L has been shown to be a cation (Na+, K+ and Ca2+) channel that is activated by Ca2+. Two members of the PCC family (polycystin 1 and 2) are mutated in autosomal dominant polycystic kidney disease, and polycystin-L is deleted in mice with renal and retinal defects. Note: this model is restricted to the amino half for technical reasons. Length = 2740

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 50.2 bits (121), Expect = 3e-08
 Identities = 20/45 (44%), Positives = 24/45 (53%), Gaps = 1/45 (2%)

Query: 118 TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEG 162
             L L++N +  I  DG F  LPNL  LDL  N +T I   AF G
Sbjct: 3   KSLDLSNNRLTVI-PDGAFKGLPNLKVLDLSGNNLTSISPEAFSG 46

Length = 60

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 53.0 bits (127), Expect = 2e-07
 Identities = 53/199 (26%), Positives = 73/199 (36%), Gaps = 41/199 (20%)

Query: 106 LKEIPKDIPLYT---TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEG 162
           + +IP  I L      EL L+DN+I  + S      LPNL  LDL  N ++ +       
Sbjct: 128 ITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRN--LPNLKNLDLSFNDLSDLPKLLSNL 185

Query: 163 ENDQ-GCLGDNYCPPKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYR 221
            N     L  N         +  L             EL                     
Sbjct: 186 SNLNNLDLSGN--------KISDL--PPEIELLSALEEL--------------------- 214

Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPE 281
           DLSNN I      + S L  LS L LS NKL+ +  +++  L +L  + L  N IS I  
Sbjct: 215 DLSNNSI-IELLSSLSNLKNLSGLELSNNKLEDLP-ESIGNLSNLETLDLSNNQISSIS- 271

Query: 282 GAFADLHAITHLAIGGNPL 300
            +   L  +  L + GN L
Sbjct: 272 -SLGSLTNLRELDLSGNSL 289

Length = 394

>gnl|CDD|214507 smart00082, LRRCT, Leucine rich repeat C-terminal domain

 Score = 45.1 bits (107), Expect = 1e-06
 Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 3/52 (5%)

Query: 298 NPLYCDCGLAWLSEWVKRDYV--EPGIARCTEPASMRDKLLLTAPASSFQCK 347
           NP  CDC L WL  W++ +    +P   RC  P+S+R   LL    S F+C 
Sbjct: 1   NPFICDCELRWLLRWLQANEHLQDPVDLRCASPSSLRGP-LLELLHSEFKCP 51

Length = 51

>gnl|CDD|214470 smart00013, LRRNT, Leucine rich repeat N-terminal domain

 Score = 42.7 bits (101), Expect = 8e-06
 Identities = 20/33 (60%), Positives = 24/33 (72%)

Query: 87  ACPSGCSCDGTRVDCSQRGLKEIPKDIPLYTTE 119
           ACP+ C+C GT VDCS RGL E+P D+P  TT 
Sbjct: 1   ACPAPCNCSGTAVDCSGRGLTEVPLDLPPDTTL 33

Length = 33

>gnl|CDD|238011 cd00054, EGF_CA, Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins

 Score = 42.6 bits (101), Expect = 9e-06
 Identities = 16/38 (42%), Positives = 24/38 (63%), Gaps = 1/38 (2%)

Query: 513 NVDDCV-NHMCQNGGTCVDGINDYTCKCEGDFVGKFCE 549
           ++D+C   + CQNGGTCV+ +  Y C C   + G+ CE
Sbjct: 1   DIDECASGNPCQNGGTCVNTVGSYRCSCPPGYTGRNCE 38

Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements. Length = 38

>gnl|CDD|238011 cd00054, EGF_CA, Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins

 Score = 41.9 bits (99), Expect = 2e-05
 Identities = 16/38 (42%), Positives = 25/38 (65%), Gaps = 1/38 (2%)

Query: 435 NIDDCLS-HKCENNATCVDLIQAYECRCAPGFQGEFCQ 471
           +ID+C S + C+N  TCV+ + +Y C C PG+ G  C+
Sbjct: 1   DIDECASGNPCQNGGTCVNTVGSYRCSCPPGYTGRNCE 38

Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements. Length = 38

>gnl|CDD|238011 cd00054, EGF_CA, Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins

 Score = 40.3 bits (95), Expect = 5e-05
 Identities = 14/32 (43%), Positives = 19/32 (59%)

Query: 480 EYNPCRNGARCLDHFSHYTCECTPGFSGVNCT 511
             NPC+NG  C++    Y C C PG++G NC 
Sbjct: 7   SGNPCQNGGTCVNTVGSYRCSCPPGYTGRNCE 38

Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements. Length = 38

>gnl|CDD|238011 cd00054, EGF_CA, Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins

 Score = 39.9 bits (94), Expect = 7e-05
 Identities = 21/38 (55%), Positives = 23/38 (60%), Gaps = 2/38 (5%)

Query: 397 IDACY-GNPCRNSGTCKLLEEGRFNCECAPGYTGDRCE 433
           ID C  GNPC+N GTC     G + C C PGYTG  CE
Sbjct: 2   IDECASGNPCQNGGTCVNTV-GSYRCSCPPGYTGRNCE 38

Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements. Length = 38

>gnl|CDD|201808 pfam01462, LRRNT, Leucine rich repeat N-terminal domain

 Score = 39.5 bits (93), Expect = 8e-05
 Identities = 18/28 (64%), Positives = 22/28 (78%)

Query: 87  ACPSGCSCDGTRVDCSQRGLKEIPKDIP 114
           ACP+ C C GT VDCS RGL E+P+D+P
Sbjct: 1   ACPAPCVCSGTVVDCSGRGLTEVPRDLP 28

Leucine Rich Repeats pfam00560 are short sequence motifs present in a number of proteins with diverse functions and cellular locations. Leucine Rich Repeats are often flanked by cysteine rich domains. This domain is often found at the N-terminus of tandem leucine rich repeats. Length = 28

>gnl|CDD|205079 pfam12799, LRR_4, Leucine Rich repeats (2 copies)

 Score = 39.8 bits (94), Expect = 9e-05
 Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 3/39 (7%)

Query: 118 TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIE 156
             L L++N+I  +        LPNL  LDL  N++T + 
Sbjct: 4   ETLDLSNNQITDLPP---LSNLPNLETLDLSGNKITDLS 39

Leucine rich repeats are short sequence motifs present in a number of proteins with diverse functions and cellular locations. These repeats are usually involved in protein-protein interactions. Each Leucine Rich Repeat is composed of a beta-alpha unit. These units form elongated non-globular structures. Leucine Rich Repeats are often flanked by cysteine rich domains. Length = 43

>gnl|CDD|205079 pfam12799, LRR_4, Leucine Rich repeats (2 copies)

 Score = 39.4 bits (93), Expect = 1e-04
 Identities = 12/41 (29%), Positives = 20/41 (48%), Gaps = 2/41 (4%)

Query: 241 KLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPE 281
            L  L LS N++  +    L+ L +L  + L GN I+ +  
Sbjct: 2   NLETLDLSNNQITDLP--PLSNLPNLETLDLSGNKITDLSP 40

Leucine rich repeats are short sequence motifs present in a number of proteins with diverse functions and cellular locations. These repeats are usually involved in protein-protein interactions. Each Leucine Rich Repeat is composed of a beta-alpha unit. These units form elongated non-globular structures. Leucine Rich Repeats are often flanked by cysteine rich domains. Length = 43

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 43.8 bits (103), Expect = 2e-04
 Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 2/77 (2%)

Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPE 281
           DL NN I  +        S L +L LS NK++ +    L  L +L+ + L  ND+S +P+
Sbjct: 122 DLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSP-LRNLPNLKNLDLSFNDLSDLPK 180

Query: 282 GAFADLHAITHLAIGGN 298
              ++L  + +L + GN
Sbjct: 181 LL-SNLSNLNNLDLSGN 196

Length = 394

>gnl|CDD|214542 smart00179, EGF_CA, Calcium-binding EGF-like domain

 Score = 37.6 bits (88), Expect = 5e-04
 Identities = 16/39 (41%), Positives = 25/39 (64%), Gaps = 2/39 (5%)

Query: 513 NVDDCV-NHMCQNGGTCVDGINDYTCKCEGDFV-GKFCE 549
           ++D+C   + CQNGGTCV+ +  Y C+C   +  G+ CE
Sbjct: 1   DIDECASGNPCQNGGTCVNTVGSYRCECPPGYTDGRNCE 39

Length = 39

>gnl|CDD|214542 smart00179, EGF_CA, Calcium-binding EGF-like domain

 Score = 36.8 bits (86), Expect = 8e-04
 Identities = 16/39 (41%), Positives = 25/39 (64%), Gaps = 2/39 (5%)

Query: 435 NIDDCLS-HKCENNATCVDLIQAYECRCAPGFQ-GEFCQ 471
           +ID+C S + C+N  TCV+ + +Y C C PG+  G  C+
Sbjct: 1   DIDECASGNPCQNGGTCVNTVGSYRCECPPGYTDGRNCE 39

Length = 39

>gnl|CDD|197688 smart00370, LRR, Leucine-rich repeats, outliers

 Score = 36.6 bits (86), Expect = 0.001
 Identities = 10/24 (41%), Positives = 14/24 (58%)

Query: 263 LKSLRIISLHGNDISMIPEGAFAD 286
           L +LR + L  N +S +P GAF  
Sbjct: 1   LPNLRELDLSNNQLSSLPPGAFQG 24

Length = 24

>gnl|CDD|197687 smart00369, LRR_TYP, Leucine-rich repeats, typical (most populated) subfamily

 Score = 36.6 bits (86), Expect = 0.001
 Identities = 10/24 (41%), Positives = 14/24 (58%)

Query: 263 LKSLRIISLHGNDISMIPEGAFAD 286
           L +LR + L  N +S +P GAF  
Sbjct: 1   LPNLRELDLSNNQLSSLPPGAFQG 24

Length = 24

>gnl|CDD|205079 pfam12799, LRR_4, Leucine Rich repeats (2 copies)

 Score = 35.5 bits (83), Expect = 0.002
 Identities = 16/35 (45%), Positives = 18/35 (51%), Gaps = 2/35 (5%)

Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCID 256
           DLSNNQI  L     S L  L  L LS NK+  + 
Sbjct: 7   DLSNNQITDLPPL--SNLPNLETLDLSGNKITDLS 39

Leucine rich repeats are short sequence motifs present in a number of proteins with diverse functions and cellular locations. These repeats are usually involved in protein-protein interactions. Each Leucine Rich Repeat is composed of a beta-alpha unit. These units form elongated non-globular structures. Leucine Rich Repeats are often flanked by cysteine rich domains. Length = 43

>gnl|CDD|214542 smart00179, EGF_CA, Calcium-binding EGF-like domain

 Score = 35.3 bits (82), Expect = 0.003
 Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 1/33 (3%)

Query: 480 EYNPCRNGARCLDHFSHYTCECTPGFS-GVNCT 511
             NPC+NG  C++    Y CEC PG++ G NC 
Sbjct: 7   SGNPCQNGGTCVNTVGSYRCECPPGYTDGRNCE 39

Length = 39

>gnl|CDD|215652 pfam00008, EGF, EGF-like domain

 Score = 34.7 bits (80), Expect = 0.004
 Identities = 14/26 (53%), Positives = 17/26 (65%)

Query: 482 NPCRNGARCLDHFSHYTCECTPGFSG 507
           NPC NG  C+D    YTCEC  G++G
Sbjct: 5   NPCSNGGTCVDTPGGYTCECPEGYTG 30

There is no clear separation between noise and signal. pfam00053 is very similar, but has 8 instead of 6 conserved cysteines. Includes some cytokine receptors. The EGF domain misses the N-terminus regions of the Ca2+ binding EGF domains (this is the main reason of discrepancy between swiss-prot domain start/end and Pfam). The family is hard to model due to many similar but different sub-types of EGF domains. Pfam certainly misses a number of EGF domains. Length = 32

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	604
KOG4237|consensus	498		100.0
KOG4194|consensus	873		99.96
KOG4237|consensus	498		99.94
KOG4194|consensus	873		99.86
KOG4289|consensus	2531		99.85
KOG0444|consensus	1255		99.75
KOG4289|consensus	2531		99.73
KOG1219|consensus	4289		99.69
KOG0617|consensus	264		99.66
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.62
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.62
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.62
KOG1219|consensus	4289		99.62
KOG0444|consensus	1255		99.61
KOG1217|consensus	487		99.61
KOG1217|consensus	487		99.59
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.58
KOG0617|consensus	264		99.56
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.54
KOG0472|consensus	565		99.5
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.49
KOG0472|consensus	565		99.47
KOG1214|consensus	1289		99.46
KOG0618|consensus	1081		99.41
KOG0618|consensus	1081		99.41
KOG1214|consensus	1289		99.39
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.39
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.35
KOG1259|consensus	490		99.32
KOG0532|consensus	722		99.31
KOG1225|consensus	525		99.28
KOG1225|consensus	525		99.23
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	99.21
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	99.2
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.16
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.12
KOG1259|consensus	490		99.1
KOG3207|consensus	505		99.0
PLN03210	1153	Resistant to P. syringae 6; Provisional	98.98
KOG3207|consensus	505		98.91
KOG1859|consensus	1096		98.89
PLN03150	623	hypothetical protein; Provisional	98.87
KOG0994|consensus	1758		98.87
TIGR00864	2740	PCC polycystin cation channel protein. Note: this	98.87
KOG0532|consensus	722		98.87
KOG4260|consensus	350		98.87
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.86
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.84
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.81
KOG1226|consensus	783		98.81
KOG4260|consensus	350		98.79
KOG0531|consensus	414		98.74
KOG0531|consensus	414		98.72
KOG0994|consensus	1758		98.71
PLN03150	623	hypothetical protein; Provisional	98.67
KOG1644|consensus	233		98.67
KOG1226|consensus	783		98.61
KOG1644|consensus	233		98.56
smart00082	51	LRRCT Leucine rich repeat C-terminal domain.	98.51
KOG1859|consensus	1096		98.51
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	98.31
KOG4579|consensus	177		98.27
KOG4579|consensus	177		98.27
KOG2982|consensus	418		98.26
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.25
PRK15386	426	type III secretion protein GogB; Provisional	98.19
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	98.19
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.15
PF06247	197	Plasmod_Pvs28: Plasmodium ookinete surface protein	98.15
KOG1836|consensus	1705		98.13
smart00082	51	LRRCT Leucine rich repeat C-terminal domain.	98.11
KOG1836|consensus	1705		98.1
PF00008	32	EGF: EGF-like domain This is a sub-family of the P	98.06
smart00179	39	EGF_CA Calcium-binding EGF-like domain.	97.93
KOG4658|consensus	889		97.93
KOG1909|consensus	382		97.88
PF01462	28	LRRNT: Leucine rich repeat N-terminal domain; Inte	97.82
KOG4658|consensus	889		97.8
smart00013	33	LRRNT Leucine rich repeat N-terminal domain.	97.77
PF07645	42	EGF_CA: Calcium-binding EGF domain; InterPro: IPR0	97.76
PF07645	42	EGF_CA: Calcium-binding EGF domain; InterPro: IPR0	97.74
PF00008	32	EGF: EGF-like domain This is a sub-family of the P	97.74
cd00054	38	EGF_CA Calcium-binding EGF-like domain, present in	97.63
smart00179	39	EGF_CA Calcium-binding EGF-like domain.	97.63
KOG2739|consensus	260		97.54
KOG2982|consensus	418		97.47
PRK15386	426	type III secretion protein GogB; Provisional	97.47
KOG1909|consensus	382		97.43
TIGR00864	2740	PCC polycystin cation channel protein. Note: this	97.36
PF06247	197	Plasmod_Pvs28: Plasmodium ookinete surface protein	97.3
cd00054	38	EGF_CA Calcium-binding EGF-like domain, present in	97.24
cd00053	36	EGF Epidermal growth factor domain, found in epide	97.18
smart00181	35	EGF Epidermal growth factor-like domain.	97.14
KOG2123|consensus	388		97.1
PF12661	13	hEGF: Human growth factor-like EGF; PDB: 2YGQ_A 2E	97.0
smart00181	35	EGF Epidermal growth factor-like domain.	96.97
PF12947	36	EGF_3: EGF domain; InterPro: IPR024731 This entry	96.89
PF12947	36	EGF_3: EGF domain; InterPro: IPR024731 This entry	96.83
KOG2739|consensus	260		96.82
KOG3512|consensus	592		96.77
KOG2123|consensus	388		96.76
cd00053	36	EGF Epidermal growth factor domain, found in epide	96.69
PF07974	32	EGF_2: EGF-like domain; InterPro: IPR013111 A sequ	96.54
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.48
KOG3665|consensus	699		96.37
KOG1218|consensus	316		96.31
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	96.15
smart00370	26	LRR Leucine-rich repeats, outliers.	96.15
KOG1218|consensus	316		96.15
PF07974	32	EGF_2: EGF-like domain; InterPro: IPR013111 A sequ	96.15
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.15
KOG2120|consensus	419		96.14
PF12661	13	hEGF: Human growth factor-like EGF; PDB: 2YGQ_A 2E	96.1
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	95.99
smart00370	26	LRR Leucine-rich repeats, outliers.	95.99
KOG3665|consensus	699		95.98
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	95.49
PF12662	24	cEGF: Complement Clr-like EGF-like	95.48
KOG0473|consensus	326		95.41
PF12662	24	cEGF: Complement Clr-like EGF-like	95.23
smart00051	63	DSL delta serrate ligand.	95.21
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	95.2
PHA02887	126	EGF-like protein; Provisional	95.17
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	95.15
KOG3512|consensus	592		95.05
PHA03099	139	epidermal growth factor-like protein (EGF-like pro	94.91
smart00051	63	DSL delta serrate ligand.	94.87
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	94.72
PF01463	25	LRRCT: Leucine rich repeat C-terminal domain; Inte	94.61
PF14670	36	FXa_inhibition: Coagulation Factor Xa inhibitory s	94.15
PF01463	25	LRRCT: Leucine rich repeat C-terminal domain; Inte	93.62
smart00365	26	LRR_SD22 Leucine-rich repeat, SDS22-like subfamily	93.28
KOG0473|consensus	326		93.26
PF14670	36	FXa_inhibition: Coagulation Factor Xa inhibitory s	92.68
PF12946	37	EGF_MSP1_1: MSP1 EGF domain 1; InterPro: IPR024730	90.58
PF01414	63	DSL: Delta serrate ligand; InterPro: IPR001774 Lig	90.39
smart00365	26	LRR_SD22 Leucine-rich repeat, SDS22-like subfamily	90.26
PF12946	37	EGF_MSP1_1: MSP1 EGF domain 1; InterPro: IPR024730	89.42
KOG3763|consensus	585		88.47
PHA03099	139	epidermal growth factor-like protein (EGF-like pro	87.81
PF01414	63	DSL: Delta serrate ligand; InterPro: IPR001774 Lig	87.33
KOG2120|consensus	419		87.15
PHA02887	126	EGF-like protein; Provisional	87.0
smart00364	26	LRR_BAC Leucine-rich repeats, bacterial type.	86.98
KOG3516|consensus	1306		84.14
PF00053	49	Laminin_EGF: Laminin EGF-like (Domains III and V);	84.11
smart00364	26	LRR_BAC Leucine-rich repeats, bacterial type.	84.01
cd00055	50	EGF_Lam Laminin-type epidermal growth factor-like	83.65
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	83.11
KOG3516|consensus	1306		82.85
KOG4308|consensus	478		82.73
cd01475	224	vWA_Matrilin VWA_Matrilin: In cartilaginous plate,	80.98
KOG3864|consensus	221		80.94
cd01475	224	vWA_Matrilin VWA_Matrilin: In cartilaginous plate,	80.87

>KOG4237|consensus

Probab=100.00  E-value=1e-41  Score=328.32  Aligned_cols=294  Identities=27%  Similarity=0.484  Sum_probs=236.4

Q ss_pred             ccCcccccCCCCceeecCCCCCcCccccccccCCcccC-CCCCCCCCeeCC---CeEEcCCCCCCcCCCCCCccCcEEec
Q psy15407         47 KNGICFQPQGSNDYLCKCAPGYSGVEEFRTRYAGDCLI-DAACPSGCSCDG---TRVDCSQRGLKEIPKDIPLYTTELIL  122 (604)
Q Consensus        47 ~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~c~~-~~~CP~~C~C~~---~~l~cs~~~L~~iP~~l~~~~~~L~L  122 (604)
                      +.|..+..++.++|.|+      |...+.  ....|.. ...||..|+|+.   .+|+|++.+|++||.++|..+++|+|
T Consensus         3 lrG~~v~~l~~s~~~cs------g~~s~~--~~~~C~~~~~~CP~pC~Cs~~~g~~VdCr~~GL~eVP~~LP~~tveirL   74 (498)
T KOG4237|consen    3 LRGLNVADLQKSEFVCS------GLQSAW--AVPTCAHSASACPAPCTCSDVEGGIVDCRGKGLTEVPANLPPETVEIRL   74 (498)
T ss_pred             cccccccccccceeeec------Cchhhh--hhhhhhhccccCCCCcccCCCCCceEEccCCCcccCcccCCCcceEEEe
Confidence            56778889999999999      554331  2456765 678999999987   89999999999999999999999999


Q ss_pred             CCCcceeecCCCccCCCCCCcEEeCCCCcceecCCCcCCCcccCCcCCCCC-CCCCcc----------------------
Q psy15407        123 NDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDNY-CPPKCT----------------------  179 (604)
Q Consensus       123 ~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~l~~-~~~~~~----------------------  179 (604)
                      ..|+|+.||+ ++|+.|++|+.||||+|+|+.|.+++|.||.+|..|.+-. |.+..+                      
T Consensus        75 dqN~I~~iP~-~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~  153 (498)
T KOG4237|consen   75 DQNQISSIPP-GAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHIN  153 (498)
T ss_pred             ccCCcccCCh-hhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhc
Confidence            9999999987 5699999999999999999999999999998777665544 321110                      


Q ss_pred             ----------ccccEEEccC---------------Ccccccccccccee-------------------------------
Q psy15407        180 ----------CTVRVLFYDG---------------RAGECYIAVELFSS-------------------------------  203 (604)
Q Consensus       180 ----------~~l~~l~~~~---------------~~~~~~~~~~~~~~-------------------------------  203 (604)
                                ..+..+.+..               ....+.+..+-+..                               
T Consensus       154 Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~  233 (498)
T KOG4237|consen  154 CIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYY  233 (498)
T ss_pred             chhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchHHHHH
Confidence                      1111111100               00011111111000                               


Q ss_pred             ----eeeecc-------c------------------cCCccccceeecCCCCceeeccCCCCCCCCCCCeEEecCCccee
Q psy15407        204 ----RIRVSY-------Y------------------VGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQC  254 (604)
Q Consensus       204 ----~~~~~~-------~------------------~~~~~~~L~~L~Ls~N~i~~l~~~~f~~l~~L~~L~Ls~N~l~~  254 (604)
                          ......       +                  ...+ .+|++|+|++|+|+.|.+.+|.++..|++|+|..|+|..
T Consensus       234 ~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L-~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~  312 (498)
T KOG4237|consen  234 KRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKL-PNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEF  312 (498)
T ss_pred             HHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhc-ccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHH
Confidence                000000       0                  0112 378999999999999999999999999999999999999


Q ss_pred             eeccccCCCCcccEEEccCCccccCCcccccCcccceeeeccCCCcccccCCCccccccccccccCCccccCCCCccccc
Q psy15407        255 IDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIGGNPLYCDCGLAWLSEWVKRDYVEPGIARCTEPASMRDK  334 (604)
Q Consensus       255 i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~Npl~CdC~l~~l~~~~~~~~~~~~~~~C~~P~~l~g~  334 (604)
                      +...+|.+|..|+.|+|.+|+|+.+.+.+|..+.+|..|+|-.|||.|||++.||++|+++.. ..++++|+.|..+++.
T Consensus       313 v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~~~-~~~~~~Cq~p~~~~~~  391 (498)
T KOG4237|consen  313 VSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGEWLRKKS-VVGNPRCQSPGFVRQI  391 (498)
T ss_pred             HHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchHHHHHHHhhCC-CCCCCCCCCCchhccc
Confidence            999999999999999999999999999999999999999999999999999999999999887 7788999999999999


Q ss_pred             ccccCCCCceeecCccc
Q psy15407        335 LLLTAPASSFQCKEKVS  351 (604)
Q Consensus       335 ~l~~~~~~~~~C~~~~~  351 (604)
                      .+.+++.++|.|..+.+
T Consensus       392 ~~~dv~~~~~~c~~~ee  408 (498)
T KOG4237|consen  392 PISDVAFGDFRCGGPEE  408 (498)
T ss_pred             cchhccccccccCCccc
Confidence            99999999999985433

>KOG4194|consensus

Probab=99.96  E-value=1.3e-30  Score=262.62  Aligned_cols=253  Identities=28%  Similarity=0.474  Sum_probs=173.8

Q ss_pred             CeEEcCCCCCCcCCCC-CCc--cCcEEecCCCcceeecCCCccCCCCCCcEEeCCCCcceecCCCcCCCcccCCcCCCCC
Q psy15407         97 TRVDCSQRGLKEIPKD-IPL--YTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDNY  173 (604)
Q Consensus        97 ~~l~cs~~~L~~iP~~-l~~--~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~l~~  173 (604)
                      +.||+|.|.|++||.. +|.  ++++|+|++|+|+.|.. +.|..|.+|..|.|++|+|+.++..+|..|++|+.|+|..
T Consensus       152 rslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~-~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnr  230 (873)
T KOG4194|consen  152 RSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLET-GHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNR  230 (873)
T ss_pred             hhhhhhhchhhcccCCCCCCCCCceEEeecccccccccc-ccccccchheeeecccCcccccCHHHhhhcchhhhhhccc
Confidence            6799999999999875 443  56899999999999976 4588888888888888888888888888888888888887


Q ss_pred             CCCC--------ccccccEEEccCC---------------cccccccccccee------------------eee---ecc
Q psy15407        174 CPPK--------CTCTVRVLFYDGR---------------AGECYIAVELFSS------------------RIR---VSY  209 (604)
Q Consensus       174 ~~~~--------~~~~l~~l~~~~~---------------~~~~~~~~~~~~~------------------~~~---~~~  209 (604)
                      |.+.        -+.+++.+.+..|               ..++.+..|.+..                  .+.   +..
T Consensus       231 N~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~  310 (873)
T KOG4194|consen  231 NRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHI  310 (873)
T ss_pred             cceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeec
Confidence            7422        2233333333211               1111111111110                  000   000


Q ss_pred             ccCCccccceeecCCCCceeeccCCCCCCCCCCCeEEecCCcceeeecc---------------------------ccCC
Q psy15407        210 YVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRD---------------------------ALAG  262 (604)
Q Consensus       210 ~~~~~~~~L~~L~Ls~N~i~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~~---------------------------~f~~  262 (604)
                      ..-.+-.+|++|+||+|+|+.+++..|..|..|++|+|++|+|+.|...                           +|.+
T Consensus       311 d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~g  390 (873)
T KOG4194|consen  311 DSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNG  390 (873)
T ss_pred             chhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhcc
Confidence            0011224667777777777766666555555444444444444433322                           3666


Q ss_pred             CCcccEEEccCCccccCCcccccCcccceeeeccCCCc-----------------------ccccCCCcccccccccccc
Q psy15407        263 LKSLRIISLHGNDISMIPEGAFADLHAITHLAIGGNPL-----------------------YCDCGLAWLSEWVKRDYVE  319 (604)
Q Consensus       263 l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~Npl-----------------------~CdC~l~~l~~~~~~~~~~  319 (604)
                      |++|+.|+|.+|+|..|+..+|..|.+|++|+|.+|++                       .|||+++||..|+......
T Consensus       391 l~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m~Lk~Lv~nSssflCDCql~Wl~qWl~~~~lq  470 (873)
T KOG4194|consen  391 LPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPMELKELVMNSSSFLCDCQLKWLAQWLYRRKLQ  470 (873)
T ss_pred             chhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccchhhhhhhcccceEEeccHHHHHHHHHhcccc
Confidence            77777777777888888888888888888888888765                       4999999999999876554


Q ss_pred             -CCccccCCCCcccccccccCCCCceeecCcc
Q psy15407        320 -PGIARCTEPASMRDKLLLTAPASSFQCKEKV  350 (604)
Q Consensus       320 -~~~~~C~~P~~l~g~~l~~~~~~~~~C~~~~  350 (604)
                       ...+.|+.|+.+.|+.+..++..+|.|....
T Consensus       471 ~sv~a~CayPe~Lad~~i~svd~~~lvC~Dsp  502 (873)
T KOG4194|consen  471 SSVIAKCAYPEPLADQSIVSVDTANLVCDDSP  502 (873)
T ss_pred             cceeeeccCCcccccceeEeechhhceecCCC
Confidence             3457999999999999999999999998543

>KOG4237|consensus

Probab=99.94  E-value=1.8e-28  Score=237.08  Aligned_cols=278  Identities=20%  Similarity=0.276  Sum_probs=214.6

Q ss_pred             CCceecccCceeeecchhhHHHHHHhCCccccCCCCcCCCCCcccccCcccccCCCCceeecCCCCCcCccccccccCCc
Q psy15407          2 GGTCVDGINDYTCKCEGDFVGKFCEIAPFVAMMYPQTSPCQHHDCKNGICFQPQGSNDYLCKCAPGYSGVEEFRTRYAGD   81 (604)
Q Consensus         2 ~~~~~~~~np~~C~C~l~w~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~   81 (604)
                      +.|-.-|+|||+|||||.|+++++..+++++.+    ++|..|.+++.+|+.++++.+|+|.       ++.+....+.+
T Consensus       190 i~tlhlA~np~icdCnL~wla~~~a~~~ietsg----arc~~p~rl~~~Ri~q~~a~kf~c~-------~esl~s~~~~~  258 (498)
T KOG4237|consen  190 IKTLHLAQNPFICDCNLPWLADDLAMNPIETSG----ARCVSPYRLYYKRINQEDARKFLCS-------LESLPSRLSSE  258 (498)
T ss_pred             cchHhhhcCccccccccchhhhHHhhchhhccc----ceecchHHHHHHHhcccchhhhhhh-------HHhHHHhhccc
Confidence            445667999999999999999999999999988    9999999999999999999999997       66777788999


Q ss_pred             ccCCCCCCCCCeeC---CCeEEcCCCCCCcCCCCCC---ccCcEEecCCCcceeecCCCccCCCCCCcEEeCCCCcceec
Q psy15407         82 CLIDAACPSGCSCD---GTRVDCSQRGLKEIPKDIP---LYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGI  155 (604)
Q Consensus        82 c~~~~~CP~~C~C~---~~~l~cs~~~L~~iP~~l~---~~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i  155 (604)
                      |.++..||..|.=.   -+.|++++|.|+.|-++.+   ..+++|+|..|+|..+.. ++|.+|..|+.|+|.+|+|+.+
T Consensus       259 d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~-~~f~~ls~L~tL~L~~N~it~~  337 (498)
T KOG4237|consen  259 DFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSS-GMFQGLSGLKTLSLYDNQITTV  337 (498)
T ss_pred             cCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHH-HhhhccccceeeeecCCeeEEE
Confidence            99999999999642   4689999999999977654   456999999999999975 7899999999999999999999


Q ss_pred             CCCcCCCcccCCcCCCCCCCCCccccccEEEccC--Cc-------------cccccccccceeee-----eeccc-cCCc
Q psy15407        156 EDNAFEGENDQGCLGDNYCPPKCTCTVRVLFYDG--RA-------------GECYIAVELFSSRI-----RVSYY-VGNY  214 (604)
Q Consensus       156 ~~~~f~~l~~L~~L~l~~~~~~~~~~l~~l~~~~--~~-------------~~~~~~~~~~~~~~-----~~~~~-~~~~  214 (604)
                      .+.+|..+..|..|.|..||+.+.+.+..+.-..  ..             ..+.+....+....     ...-. ...-
T Consensus       338 ~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~~~~~~~~~Cq~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~s~~c  417 (498)
T KOG4237|consen  338 APGAFQTLFSLSTLNLLSNPFNCNCRLAWLGEWLRKKSVVGNPRCQSPGFVRQIPISDVAFGDFRCGGPEELGCLTSSPC  417 (498)
T ss_pred             ecccccccceeeeeehccCcccCccchHHHHHHHhhCCCCCCCCCCCCchhccccchhccccccccCCccccCCCCCCCC
Confidence            9999999999999999999999988776553211  00             01111111000000     00000 0000


Q ss_pred             cc----cceeecCCCCceeeccCCCCCCCCCCCeEEecCCcceeeeccccCCCCcccEEEccCCccccCCcccccCcccc
Q psy15407        215 PV----STMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAI  290 (604)
Q Consensus       215 ~~----~L~~L~Ls~N~i~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L  290 (604)
                      |.    --+....|++.++.+++..   -...++|+|.+|.|+.|+..   .+.+| .+||++|+|+.+....|.+|.+|
T Consensus       418 P~~c~c~~tVvRcSnk~lk~lp~~i---P~d~telyl~gn~~~~vp~~---~~~~l-~~dls~n~i~~Lsn~tf~n~tql  490 (498)
T KOG4237|consen  418 PPPCTCLDTVVRCSNKLLKLLPRGI---PVDVTELYLDGNAITSVPDE---LLRSL-LLDLSNNRISSLSNYTFSNMTQL  490 (498)
T ss_pred             CCCcchhhhhHhhcccchhhcCCCC---CchhHHHhcccchhcccCHH---HHhhh-hcccccCceehhhcccccchhhh
Confidence            00    0112345566666666543   22467889999999999766   45677 89999999999999999999999


Q ss_pred             eeeeccCC
Q psy15407        291 THLAIGGN  298 (604)
Q Consensus       291 ~~L~L~~N  298 (604)
                      .+|-|+.|
T Consensus       491 ~tlilsyn  498 (498)
T KOG4237|consen  491 STLILSYN  498 (498)
T ss_pred             heeEEecC
Confidence            99988876

>KOG4194|consensus

Probab=99.86  E-value=9e-23  Score=206.30  Aligned_cols=217  Identities=29%  Similarity=0.433  Sum_probs=160.9

Q ss_pred             CCCCCCCeeCCCeEEcCCCCCCcC-----CCCCCccCcEEecCCCcceeecCCCccCCCCCCcEEeCCCCcceecCCCcC
Q psy15407         86 AACPSGCSCDGTRVDCSQRGLKEI-----PKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAF  160 (604)
Q Consensus        86 ~~CP~~C~C~~~~l~cs~~~L~~i-----P~~l~~~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f  160 (604)
                      ..||..|.|....+||+.+.|..+     +..+|..++.|+|++|+|+.|... .|.+|++|+.++|.+|.++.|+.  |
T Consensus        44 ~~cpa~c~c~~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~-~f~nl~nLq~v~l~~N~Lt~IP~--f  120 (873)
T KOG4194|consen   44 SECPATCPCNTRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFE-FFYNLPNLQEVNLNKNELTRIPR--F  120 (873)
T ss_pred             ccCCCcCCCCceeeecCccccccccccccCCcCccceeeeeccccccccCcHH-HHhcCCcceeeeeccchhhhccc--c
Confidence            469999999999999999999986     667899999999999999999774 48999999999999999999875  4


Q ss_pred             CCcc-cCCcCCCCCCCCCc--------cccccEEEccCCccc---------------cccccccceeeeeeccccCCccc
Q psy15407        161 EGEN-DQGCLGDNYCPPKC--------TCTVRVLFYDGRAGE---------------CYIAVELFSSRIRVSYYVGNYPV  216 (604)
Q Consensus       161 ~~l~-~L~~L~l~~~~~~~--------~~~l~~l~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~  216 (604)
                      .+.. .|+.|+|.+|-+..        +..++.++++.|...               +.+..|.+... ....|... . 
T Consensus       121 ~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l-~~~~F~~l-n-  197 (873)
T KOG4194|consen  121 GHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTL-ETGHFDSL-N-  197 (873)
T ss_pred             cccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeecccccccc-cccccccc-c-
Confidence            4443 37777777774332        334444555443221               11111111111 11112222 2 


Q ss_pred             cceeecCCCCceeeccCCCCCCCCCCCeEEecCCcceeeeccccCCCCcccEEEccCCccccCCcccccCcccceeeecc
Q psy15407        217 STMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIG  296 (604)
Q Consensus       217 ~L~~L~Ls~N~i~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~  296 (604)
                      +|..|.|++|+|+.++...|.+|++|+.|+|..|+|+.+.-.+|.+|++|+.|.|..|.|+.+..++|-.+.++++|+|+
T Consensus       198 sL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~  277 (873)
T KOG4194|consen  198 SLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLE  277 (873)
T ss_pred             hheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecc
Confidence            67778888888888888888888888888888888888877888888888888888888888888999999999999999


Q ss_pred             CCCcccccCCCcc
Q psy15407        297 GNPLYCDCGLAWL  309 (604)
Q Consensus       297 ~Npl~CdC~l~~l  309 (604)
                      .|.+.= -.-.|+
T Consensus       278 ~N~l~~-vn~g~l  289 (873)
T KOG4194|consen  278 TNRLQA-VNEGWL  289 (873)
T ss_pred             cchhhh-hhcccc
Confidence            998862 233454

>KOG4289|consensus

Probab=99.85  E-value=8.5e-21  Score=205.03  Aligned_cols=105  Identities=43%  Similarity=1.117  Sum_probs=92.9

Q ss_pred             CCCcCCCCCCCCeeecC---------------------CCCceeeeCCCCCcCCCCcccCCCCCCCCCCCCCeeeeCCCC
Q psy15407        359 NACYKSPCTNQGVCEPL---------------------PERQYQCRCTPGYHGQHCEFMIDACYGNPCRNSGTCKLLEEG  417 (604)
Q Consensus       359 ~~C~~~~C~~~g~C~~~---------------------~~~~~~C~C~~g~~G~~c~~~~~~C~~~~C~~~~~C~~~~~~  417 (604)
                      +.|...||.|...|...                     +.++++|.||+||+|..|++.+|.|+..||.++|+|.. ..|
T Consensus      1180 niClrEPCenymkCvsvlrFdssapf~~s~s~lfRpi~pvnglrCrCPpGFTgd~CeTeiDlCYs~pC~nng~C~s-rEg 1258 (2531)
T KOG4289|consen 1180 NICLREPCENYMKCVSVLRFDSSAPFLASDSVLFRPIHPVNGLRCRCPPGFTGDYCETEIDLCYSGPCGNNGRCRS-REG 1258 (2531)
T ss_pred             chhhcchhHHHHhhhhheeecccCccccccceeeeeccccCceeEeCCCCCCcccccchhHhhhcCCCCCCCceEE-ecC
Confidence            66888999998888742                     34679999999999999999999999999999999987 578


Q ss_pred             ceEeeCCCCCcCCCCCcCC--CcCCCCCCCCCcEEEeC-CCCeEEecCCC
Q psy15407        418 RFNCECAPGYTGDRCEINI--DDCLSHKCENNATCVDL-IQAYECRCAPG  464 (604)
Q Consensus       418 ~~~C~C~~g~~g~~C~~~~--~~C~~~~C~~~~~C~~~-~~~~~C~C~~g  464 (604)
                      +|+|.|.+||+|+.||++.  ..|.+..|.++|+|++. .+++.|.|+.|
T Consensus      1259 gYtCeCrpg~tGehCEvs~~agrCvpGvC~nggtC~~~~nggf~c~Cp~g 1308 (2531)
T KOG4289|consen 1259 GYTCECRPGFTGEHCEVSARAGRCVPGVCKNGGTCVNLLNGGFCCHCPYG 1308 (2531)
T ss_pred             ceeEEecCCccccceeeecccCccccceecCCCEEeecCCCceeccCCCc
Confidence            9999999999999999654  46889999999999985 57799999987

>KOG0444|consensus

Probab=99.75  E-value=3.5e-20  Score=188.80  Aligned_cols=200  Identities=25%  Similarity=0.245  Sum_probs=119.7

Q ss_pred             CCeEEcCCCCCCcCCCCC--CccCcEEecCCCcceeecCCCccCCCCCCcEEeCCCCcceecCCCcCCCcccCCcCCCCC
Q psy15407         96 GTRVDCSQRGLKEIPKDI--PLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDNY  173 (604)
Q Consensus        96 ~~~l~cs~~~L~~iP~~l--~~~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~l~~  173 (604)
                      -++||+|+|+|+++|..+  ..+...|+|++|+|.+||. .+|-+|..|-.||||+|+|..++|. ...|..|++|.|++
T Consensus       105 Lt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn-~lfinLtDLLfLDLS~NrLe~LPPQ-~RRL~~LqtL~Ls~  182 (1255)
T KOG0444|consen  105 LTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPN-SLFINLTDLLFLDLSNNRLEMLPPQ-IRRLSMLQTLKLSN  182 (1255)
T ss_pred             ceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCc-hHHHhhHhHhhhccccchhhhcCHH-HHHHhhhhhhhcCC
Confidence            378999999999999988  5677899999999999986 5799999999999999999999885 56788999999999


Q ss_pred             CCCCcc--------ccccEEEccCCccccc-cccccc---------eeeeeeccccCC--ccccceeecCCCCceeeccC
Q psy15407        174 CPPKCT--------CTVRVLFYDGRAGECY-IAVELF---------SSRIRVSYYVGN--YPVSTMYRDLSNNQIGFLSN  233 (604)
Q Consensus       174 ~~~~~~--------~~l~~l~~~~~~~~~~-~~~~~~---------~~~~~~~~~~~~--~~~~L~~L~Ls~N~i~~l~~  233 (604)
                      ||+..+        .+|.++.+++...++. ++..+-         .+.+.+...+..  ...+|+.|+||+|+|+.+..
T Consensus       183 NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~iteL~~  262 (1255)
T KOG0444|consen  183 NPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKITELNM  262 (1255)
T ss_pred             ChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCceeeeec
Confidence            986542        3344444443222211 111000         000111111000  00144445555555554433


Q ss_pred             CCCCCCCCCCeEEecCCcceeeeccccCCCCcccEEEccCCccc--cCCcccccCcccceeeeccCCCc
Q psy15407        234 FTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDIS--MIPEGAFADLHAITHLAIGGNPL  300 (604)
Q Consensus       234 ~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~--~i~~~~f~~l~~L~~L~L~~Npl  300 (604)
                       ......+|++|+||+|+|+.+ |+++-.|++|+.|.+.+|+|+  .||.+ ++.|..|+.+.+++|.+
T Consensus       263 -~~~~W~~lEtLNlSrNQLt~L-P~avcKL~kL~kLy~n~NkL~FeGiPSG-IGKL~~Levf~aanN~L  328 (1255)
T KOG0444|consen  263 -TEGEWENLETLNLSRNQLTVL-PDAVCKLTKLTKLYANNNKLTFEGIPSG-IGKLIQLEVFHAANNKL  328 (1255)
T ss_pred             -cHHHHhhhhhhccccchhccc-hHHHhhhHHHHHHHhccCcccccCCccc-hhhhhhhHHHHhhcccc
Confidence             223334455555555555554 344445555555555555543  44443 34455555556666655

>KOG4289|consensus

Probab=99.73  E-value=1.9e-17  Score=179.62  Aligned_cols=105  Identities=37%  Similarity=0.934  Sum_probs=90.1

Q ss_pred             CCCCCCCCCCCCeeeeC---------------------CCCceEeeCCCCCcCCCCCcCCCcCCCCCCCCCcEEEeCCCC
Q psy15407        398 DACYGNPCRNSGTCKLL---------------------EEGRFNCECAPGYTGDRCEINIDDCLSHKCENNATCVDLIQA  456 (604)
Q Consensus       398 ~~C~~~~C~~~~~C~~~---------------------~~~~~~C~C~~g~~g~~C~~~~~~C~~~~C~~~~~C~~~~~~  456 (604)
                      +.|...||.+...|...                     ..++++|.|++||+|+.|+..+|.|...||.++|.|....|+
T Consensus      1180 niClrEPCenymkCvsvlrFdssapf~~s~s~lfRpi~pvnglrCrCPpGFTgd~CeTeiDlCYs~pC~nng~C~srEgg 1259 (2531)
T KOG4289|consen 1180 NICLREPCENYMKCVSVLRFDSSAPFLASDSVLFRPIHPVNGLRCRCPPGFTGDYCETEIDLCYSGPCGNNGRCRSREGG 1259 (2531)
T ss_pred             chhhcchhHHHHhhhhheeecccCccccccceeeeeccccCceeEeCCCCCCcccccchhHhhhcCCCCCCCceEEecCc
Confidence            45888899888777432                     347789999999999999999999999999999999999999


Q ss_pred             eEEecCCCCCCCCcccCCC--cCCCCCCCCCCCCceeec-CCCeEEecCCC
Q psy15407        457 YECRCAPGFQGEFCQTKTP--FCAGEYNPCRNGARCLDH-FSHYTCECTPG  504 (604)
Q Consensus       457 ~~C~C~~g~~g~~C~~~~~--~C~~~~~~C~~~~~C~~~-~~~~~C~C~~g  504 (604)
                      |+|.|.+||+|+.|+.+..  .|.  ++.|.++++|++. .+++.|.|+.|
T Consensus      1260 YtCeCrpg~tGehCEvs~~agrCv--pGvC~nggtC~~~~nggf~c~Cp~g 1308 (2531)
T KOG4289|consen 1260 YTCECRPGFTGEHCEVSARAGRCV--PGVCKNGGTCVNLLNGGFCCHCPYG 1308 (2531)
T ss_pred             eeEEecCCccccceeeecccCccc--cceecCCCEEeecCCCceeccCCCc
Confidence            9999999999999987653  354  4689999999876 46788999887

>KOG1219|consensus

Probab=99.69  E-value=3.8e-17  Score=183.10  Aligned_cols=113  Identities=36%  Similarity=1.009  Sum_probs=108.2

Q ss_pred             CCCcCCCCCCCCeeecCCCCceeeeCCCCCcCCCCcccCCCCCCCCCCCCCeeeeCCCCceEeeCCCCCcCCCCCcC-CC
Q psy15407        359 NACYKSPCTNQGVCEPLPERQYQCRCTPGYHGQHCEFMIDACYGNPCRNSGTCKLLEEGRFNCECAPGYTGDRCEIN-ID  437 (604)
Q Consensus       359 ~~C~~~~C~~~g~C~~~~~~~~~C~C~~g~~G~~c~~~~~~C~~~~C~~~~~C~~~~~~~~~C~C~~g~~g~~C~~~-~~  437 (604)
                      ++|..+||.++|+|+..+.++|+|.|++.|.|.+||.++..|..+||..+|+|+. ..+.|.|.|+.||+|.+||.. ++
T Consensus      3865 d~C~~npCqhgG~C~~~~~ggy~CkCpsqysG~~CEi~~epC~snPC~~GgtCip-~~n~f~CnC~~gyTG~~Ce~~Gi~ 3943 (4289)
T KOG1219|consen 3865 DPCNDNPCQHGGTCISQPKGGYKCKCPSQYSGNHCEIDLEPCASNPCLTGGTCIP-FYNGFLCNCPNGYTGKRCEARGIS 3943 (4289)
T ss_pred             cccccCcccCCCEecCCCCCceEEeCcccccCcccccccccccCCCCCCCCEEEe-cCCCeeEeCCCCccCceeeccccc
Confidence            7899999999999999999999999999999999999999999999999999987 478999999999999999987 99


Q ss_pred             cCCCCCCCCCcEEEeCCCCeEEecCCCCCCCCccc
Q psy15407        438 DCLSHKCENNATCVDLIQAYECRCAPGFQGEFCQT  472 (604)
Q Consensus       438 ~C~~~~C~~~~~C~~~~~~~~C~C~~g~~g~~C~~  472 (604)
                      +|..++|.++|.|++..|+|.|.|.+||.|+.|..
T Consensus      3944 eCs~n~C~~gg~C~n~~gsf~CncT~g~~gr~c~~ 3978 (4289)
T KOG1219|consen 3944 ECSKNVCGTGGQCINIPGSFHCNCTPGILGRTCCA 3978 (4289)
T ss_pred             ccccccccCCceeeccCCceEeccChhHhcccCcc
Confidence            99999999999999999999999999999999853

>KOG0617|consensus

Probab=99.66  E-value=2.3e-18  Score=148.89  Aligned_cols=172  Identities=23%  Similarity=0.346  Sum_probs=140.0

Q ss_pred             CeEEcCCCCCCcCCCCCC--ccCcEEecCCCcceeecCCCccCCCCCCcEEeCCCCcceecCCCcCCCcccCCcCCCCCC
Q psy15407         97 TRVDCSQRGLKEIPKDIP--LYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDNYC  174 (604)
Q Consensus        97 ~~l~cs~~~L~~iP~~l~--~~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~l~~~  174 (604)
                      +.|.+|+|+|+.||..|.  .+++.|+|++|+|+.+|..  ++.|++|+.|+++-|++..++ ..|..++.|+.|+|.+|
T Consensus        36 TrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~--issl~klr~lnvgmnrl~~lp-rgfgs~p~levldltyn  112 (264)
T KOG0617|consen   36 TRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTS--ISSLPKLRILNVGMNRLNILP-RGFGSFPALEVLDLTYN  112 (264)
T ss_pred             hhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChh--hhhchhhhheecchhhhhcCc-cccCCCchhhhhhcccc
Confidence            678999999999999884  5679999999999999876  899999999999999987665 56999999999999986


Q ss_pred             CCCccccccEEEccCCccccccccccceeeeeeccccCCccccceeecCCCCceeeccCCCCCCCCCCCeEEecCCccee
Q psy15407        175 PPKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQC  254 (604)
Q Consensus       175 ~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~i~~l~~~~f~~l~~L~~L~Ls~N~l~~  254 (604)
                      ...               +-.++.+.|            ....|..|.|+.|.+..+++ ..+.|++|+.|.|..|.+-+
T Consensus       113 nl~---------------e~~lpgnff------------~m~tlralyl~dndfe~lp~-dvg~lt~lqil~lrdndll~  164 (264)
T KOG0617|consen  113 NLN---------------ENSLPGNFF------------YMTTLRALYLGDNDFEILPP-DVGKLTNLQILSLRDNDLLS  164 (264)
T ss_pred             ccc---------------cccCCcchh------------HHHHHHHHHhcCCCcccCCh-hhhhhcceeEEeeccCchhh
Confidence            532               111111111            12367888999999998887 57889999999999999999


Q ss_pred             eeccccCCCCcccEEEccCCccccCCcccccCc---ccceeeeccCCCcc
Q psy15407        255 IDRDALAGLKSLRIISLHGNDISMIPEGAFADL---HAITHLAIGGNPLY  301 (604)
Q Consensus       255 i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l---~~L~~L~L~~Npl~  301 (604)
                      + |..++.|..|+.|.+.+|+|+.+|++ ++.+   .+-+.+.+..|||.
T Consensus       165 l-pkeig~lt~lrelhiqgnrl~vlppe-l~~l~l~~~k~v~r~E~NPwv  212 (264)
T KOG0617|consen  165 L-PKEIGDLTRLRELHIQGNRLTVLPPE-LANLDLVGNKQVMRMEENPWV  212 (264)
T ss_pred             C-cHHHHHHHHHHHHhcccceeeecChh-hhhhhhhhhHHHHhhhhCCCC
Confidence            9 55688899999999999999999996 3333   23456788899996

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.62  E-value=1.3e-15  Score=167.59  Aligned_cols=57  Identities=25%  Similarity=0.464  Sum_probs=45.5

Q ss_pred             CCeEEcCCCCCCcCCCCCCccCcEEecCCCcceeecCCCccCCCCCCcEEeCCCCcceecCC
Q psy15407         96 GTRVDCSQRGLKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIED  157 (604)
Q Consensus        96 ~~~l~cs~~~L~~iP~~l~~~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i~~  157 (604)
                      ...|+|++++|++||..++..++.|+|.+|+|+.||.     .+++|++|+|++|+|+.|+.
T Consensus       203 ~~~LdLs~~~LtsLP~~l~~~L~~L~L~~N~Lt~LP~-----lp~~Lk~LdLs~N~LtsLP~  259 (788)
T PRK15387        203 NAVLNVGESGLTTLPDCLPAHITTLVIPDNNLTSLPA-----LPPELRTLEVSGNQLTSLPV  259 (788)
T ss_pred             CcEEEcCCCCCCcCCcchhcCCCEEEccCCcCCCCCC-----CCCCCcEEEecCCccCcccC
Confidence            4578899999999998888888888888888888864     15778888888888877753

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.62  E-value=1.1e-15  Score=179.48  Aligned_cols=203  Identities=20%  Similarity=0.162  Sum_probs=114.4

Q ss_pred             CeEEcCCCCCC-cCCCCCCccCcEEecCCCcceeecCCCccCCCCCCcEEeCCCCcceecCCCcCCCcccCCcCCCCCCC
Q psy15407         97 TRVDCSQRGLK-EIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDNYCP  175 (604)
Q Consensus        97 ~~l~cs~~~L~-~iP~~l~~~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~l~~~~  175 (604)
                      +.|++++|+++ .+|......+++|+|++|.|+...+.. |..+++|++|+|++|.+....+..|..+.+|++|+|++|.
T Consensus       121 ~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~-~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~  199 (968)
T PLN00113        121 RYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPND-IGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQ  199 (968)
T ss_pred             CEEECcCCccccccCccccCCCCEEECcCCcccccCChH-HhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCC
Confidence            56666666665 455555556677777777775332322 6777777777777777776666777777777777777764


Q ss_pred             CC--------ccccccEEEccCCcccccccccc--cee-------eee----eccccCCccccceeecCCCCceeeccCC
Q psy15407        176 PK--------CTCTVRVLFYDGRAGECYIAVEL--FSS-------RIR----VSYYVGNYPVSTMYRDLSNNQIGFLSNF  234 (604)
Q Consensus       176 ~~--------~~~~l~~l~~~~~~~~~~~~~~~--~~~-------~~~----~~~~~~~~~~~L~~L~Ls~N~i~~l~~~  234 (604)
                      +.        .+..++.+.+..+.....++..+  ..+       ...    +....+.+ .+|++|+|++|+|+...+.
T Consensus       200 l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l-~~L~~L~L~~n~l~~~~p~  278 (968)
T PLN00113        200 LVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNL-KNLQYLFLYQNKLSGPIPP  278 (968)
T ss_pred             CcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCC-CCCCEEECcCCeeeccCch
Confidence            32        23344445444332221111100  000       000    00001111 2556666666666555555


Q ss_pred             CCCCCCCCCeEEecCCcceeeeccccCCCCcccEEEccCCccccCCcccccCcccceeeeccCCCcc
Q psy15407        235 TFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIGGNPLY  301 (604)
Q Consensus       235 ~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~Npl~  301 (604)
                      .|..+++|+.|+|++|+|....|..|..+++|+.|+|++|.++...+..|..+++|+.|+|++|.+.
T Consensus       279 ~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~  345 (968)
T PLN00113        279 SIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFS  345 (968)
T ss_pred             hHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCc
Confidence            5566666666666666666555556666666666666666666555555666666666666666654

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.62  E-value=1.4e-15  Score=178.72  Aligned_cols=205  Identities=20%  Similarity=0.151  Sum_probs=134.2

Q ss_pred             CeEEcCCCCCC-cCCCCC--CccCcEEecCCCcceeecCCCccCCCCCCcEEeCCCCcceecCCCcCCCcccCCcCCCCC
Q psy15407         97 TRVDCSQRGLK-EIPKDI--PLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDNY  173 (604)
Q Consensus        97 ~~l~cs~~~L~-~iP~~l--~~~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~l~~  173 (604)
                      +.|++++|.++ .+|..+  ...++.|+|++|.|....+. .|..+++|+.|+|++|+|+...+..|..++.|+.|++++
T Consensus       359 ~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~-~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~  437 (968)
T PLN00113        359 TVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPK-SLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISN  437 (968)
T ss_pred             cEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCH-HHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcC
Confidence            56777777776 456544  24556777777776544332 266677777777777777666666666777777777766


Q ss_pred             CCCC--------ccccccEEEccCCccc--------------cccccccceeeeeeccccCCccccceeecCCCCceeec
Q psy15407        174 CPPK--------CTCTVRVLFYDGRAGE--------------CYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFL  231 (604)
Q Consensus       174 ~~~~--------~~~~l~~l~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~i~~l  231 (604)
                      |.+.        ....++.+.+..+...              +.+..+.+...  .......+ .+|+.|+|++|+++..
T Consensus       438 N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~--~~~~~~~l-~~L~~L~Ls~N~l~~~  514 (968)
T PLN00113        438 NNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGA--VPRKLGSL-SELMQLKLSENKLSGE  514 (968)
T ss_pred             CcccCccChhhccCCCCcEEECcCceeeeecCcccccccceEEECcCCccCCc--cChhhhhh-hccCEEECcCCcceee
Confidence            6432        2234444444433221              11111111100  00011112 3678888888888887


Q ss_pred             cCCCCCCCCCCCeEEecCCcceeeeccccCCCCcccEEEccCCccccCCcccccCcccceeeeccCCCcccccC
Q psy15407        232 SNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIGGNPLYCDCG  305 (604)
Q Consensus       232 ~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~Npl~CdC~  305 (604)
                      .+..|..+++|++|+|++|.|+...|..|..+++|+.|+|++|+++...+..+..+.+|+.|+|++|++.....
T Consensus       515 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p  588 (968)
T PLN00113        515 IPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLP  588 (968)
T ss_pred             CChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCC
Confidence            77788888889999999999888888888888889999999998886555567888888999999998876544

>KOG1219|consensus

Probab=99.62  E-value=9.3e-16  Score=172.29  Aligned_cols=117  Identities=33%  Similarity=1.004  Sum_probs=108.8

Q ss_pred             CcccCCCCCCCCCCCCCeeeeCCCCceEeeCCCCCcCCCCCcCCCcCCCCCCCCCcEEEeCCCCeEEecCCCCCCCCccc
Q psy15407        393 CEFMIDACYGNPCRNSGTCKLLEEGRFNCECAPGYTGDRCEINIDDCLSHKCENNATCVDLIQAYECRCAPGFQGEFCQT  472 (604)
Q Consensus       393 c~~~~~~C~~~~C~~~~~C~~~~~~~~~C~C~~g~~g~~C~~~~~~C~~~~C~~~~~C~~~~~~~~C~C~~g~~g~~C~~  472 (604)
                      |..-.+.|..+||+++|+|.....|+|.|.|++.|.|..||.++.+|.++||..+|+|+...++|.|.|+.||+|..|+.
T Consensus      3860 C~l~~d~C~~npCqhgG~C~~~~~ggy~CkCpsqysG~~CEi~~epC~snPC~~GgtCip~~n~f~CnC~~gyTG~~Ce~ 3939 (4289)
T KOG1219|consen 3860 CSLLTDPCNDNPCQHGGTCISQPKGGYKCKCPSQYSGNHCEIDLEPCASNPCLTGGTCIPFYNGFLCNCPNGYTGKRCEA 3939 (4289)
T ss_pred             ccccccccccCcccCCCEecCCCCCceEEeCcccccCcccccccccccCCCCCCCCEEEecCCCeeEeCCCCccCceeec
Confidence            43334789999999999999888899999999999999999999999999999999999999999999999999999998


Q ss_pred             C-CCcCCCCCCCCCCCCceeecCCCeEEecCCCCcCCcCc
Q psy15407        473 K-TPFCAGEYNPCRNGARCLDHFSHYTCECTPGFSGVNCT  511 (604)
Q Consensus       473 ~-~~~C~~~~~~C~~~~~C~~~~~~~~C~C~~g~~g~~c~  511 (604)
                      . +++|..  +.|.++|.|++..|+|.|.|.+||.|..|.
T Consensus      3940 ~Gi~eCs~--n~C~~gg~C~n~~gsf~CncT~g~~gr~c~ 3977 (4289)
T KOG1219|consen 3940 RGISECSK--NVCGTGGQCINIPGSFHCNCTPGILGRTCC 3977 (4289)
T ss_pred             cccccccc--ccccCCceeeccCCceEeccChhHhcccCc
Confidence            8 899986  599999999999999999999999999985

>KOG0444|consensus

Probab=99.61  E-value=3.7e-17  Score=167.00  Aligned_cols=201  Identities=22%  Similarity=0.242  Sum_probs=154.6

Q ss_pred             CeEEcCCCCCC--cCCCCCC--ccCcEEecCCCcceeecCCCccCCCCCCcEEeCCCCcceecCCCcCCCcccCCcCCCC
Q psy15407         97 TRVDCSQRGLK--EIPKDIP--LYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDN  172 (604)
Q Consensus        97 ~~l~cs~~~L~--~iP~~l~--~~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~l~  172 (604)
                      +.|+.++|+|+  -||.+|+  ..++.|+|++|+++.+|..  +..-+++..|+||+|+|..|+...|.+|..|-.|+|+
T Consensus        81 Rsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~--LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS  158 (1255)
T KOG0444|consen   81 RSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTN--LEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLS  158 (1255)
T ss_pred             HHHhhhccccccCCCCchhcccccceeeecchhhhhhcchh--hhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccc
Confidence            57888999997  5899885  5679999999999999875  8889999999999999999999999999999999999


Q ss_pred             CCCCCc-------cccccEEEccCCccccccccccce--------------eeeeeccccCCccccceeecCCCCceeec
Q psy15407        173 YCPPKC-------TCTVRVLFYDGRAGECYIAVELFS--------------SRIRVSYYVGNYPVSTMYRDLSNNQIGFL  231 (604)
Q Consensus       173 ~~~~~~-------~~~l~~l~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~L~~L~Ls~N~i~~l  231 (604)
                      +|.+..       +..|+.+.++.|.....-...+-.              ...+++.....+ .+|..+|||.|.+..+
T Consensus       159 ~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l-~NL~dvDlS~N~Lp~v  237 (1255)
T KOG0444|consen  159 NNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDL-HNLRDVDLSENNLPIV  237 (1255)
T ss_pred             cchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhh-hhhhhccccccCCCcc
Confidence            996544       345666666665433222211110              001111111111 2677889999999988


Q ss_pred             cCCCCCCCCCCCeEEecCCcceeeeccccCCCCcccEEEccCCccccCCcccccCcccceeeeccCCCcccc
Q psy15407        232 SNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIGGNPLYCD  303 (604)
Q Consensus       232 ~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~Npl~Cd  303 (604)
                      |. .+-.+.+|+.|+||+|+|+.+. .......+|++|+||.|+|+.+|. ++..|++|+.|.+.+|.+.=+
T Consensus       238 Pe-cly~l~~LrrLNLS~N~iteL~-~~~~~W~~lEtLNlSrNQLt~LP~-avcKL~kL~kLy~n~NkL~Fe  306 (1255)
T KOG0444|consen  238 PE-CLYKLRNLRRLNLSGNKITELN-MTEGEWENLETLNLSRNQLTVLPD-AVCKLTKLTKLYANNNKLTFE  306 (1255)
T ss_pred             hH-HHhhhhhhheeccCcCceeeee-ccHHHHhhhhhhccccchhccchH-HHhhhHHHHHHHhccCccccc
Confidence            76 5567899999999999999984 345566889999999999999987 577899999999999998754

>KOG1217|consensus

Probab=99.61  E-value=1.9e-14  Score=155.89  Aligned_cols=213  Identities=37%  Similarity=0.920  Sum_probs=140.2

Q ss_pred             CcCCC--CCCCCeeecCC--CCceeeeCCCCCcCCCCcccCCCCC--CCCCCCCCeeeeCCCCceEeeCCCCCcCCCCCc
Q psy15407        361 CYKSP--CTNQGVCEPLP--ERQYQCRCTPGYHGQHCEFMIDACY--GNPCRNSGTCKLLEEGRFNCECAPGYTGDRCEI  434 (604)
Q Consensus       361 C~~~~--C~~~g~C~~~~--~~~~~C~C~~g~~G~~c~~~~~~C~--~~~C~~~~~C~~~~~~~~~C~C~~g~~g~~C~~  434 (604)
                      |...+  +...+.|...+  .+.+.|.|..||.|..++...++|.  ..+|.+++.|.+. .+.|.|.|++||.|..|+.
T Consensus       129 C~~~~~~~~~~~~c~~~~~~~~~~~c~C~~g~~~~~~~~~~~~C~~~~~~c~~~~~C~~~-~~~~~C~c~~~~~~~~~~~  207 (487)
T KOG1217|consen  129 CVTGPGVCCIDGSCSNGPGSVGPFRCSCTEGYEGEPCETDLDECIQYSSPCQNGGTCVNT-GGSYLCSCPPGYTGSTCET  207 (487)
T ss_pred             ecCCCCCeeCchhhcCCCCCCCceeeeeCCCcccccccccccccccCCCCcCCCcccccC-CCCeeEeCCCCccCCcCcC
Confidence            55544  24455555442  2456666666666666665445665  2336666666553 3446666666666666653


Q ss_pred             CCCcCCCCCCCCCcEEEeCCCCeEEecCCCCCCCCcccCCCcCCCCCCCCCCCCceeecCCCeEEecCCCCcCCc--Ccc
Q psy15407        435 NIDDCLSHKCENNATCVDLIQAYECRCAPGFQGEFCQTKTPFCAGEYNPCRNGARCLDHFSHYTCECTPGFSGVN--CTV  512 (604)
Q Consensus       435 ~~~~C~~~~C~~~~~C~~~~~~~~C~C~~g~~g~~C~~~~~~C~~~~~~C~~~~~C~~~~~~~~C~C~~g~~g~~--c~~  512 (604)
                      .         .+++.|++.   +.|.+..|+.+..|...+.+|...     + +.|++..++|+|.|++||.+..  ...
T Consensus       208 ~---------~~~~~c~~~---~~~~~~~g~~~~~c~~~~~~~~~~-----~-~~c~~~~~~~~C~~~~g~~~~~~~~~~  269 (487)
T KOG1217|consen  208 T---------GNGGTCVDS---VACSCPPGARGPECEVSIVECASG-----D-GTCVNTVGSYTCRCPEGYTGDACVTCV  269 (487)
T ss_pred             C---------CCCceEecc---eeccCCCCCCCCCcccccccccCC-----C-CcccccCCceeeeCCCCccccccceee
Confidence            2         233445443   456666666666665544444321     3 7899999999999999999987  345


Q ss_pred             cCCCCCCCC-CCCCCEEeeCCCCeEeeeCCCCccCCCCcCcccccCCCCCCCC----CCCCCCCCc-eeCCCCCCCeeee
Q psy15407        513 NVDDCVNHM-CQNGGTCVDGINDYTCKCEGDFVGKFCEIAPFVAMMYPQTSPC----QHHDCKNGI-CFQPQGSNDYLCK  586 (604)
Q Consensus       513 ~~~~C~~~~-C~~~~~C~~~~~~y~C~C~~G~~G~~C~~~~~~~~~~~~~~~C----~~~~C~~g~-C~~~~g~~~~~C~  586 (604)
                      +++.|.... |.++++|++..+.|.|.|++||+|..|..       ......|    ....|.++. |......+.+.|.
T Consensus       270 ~~~~C~~~~~c~~~~~C~~~~~~~~C~C~~g~~g~~~~~-------~~~~~~C~~~~~~~~c~~g~~C~~~~~~~~~~C~  342 (487)
T KOG1217|consen  270 DVDSCALIASCPNGGTCVNVPGSYRCTCPPGFTGRLCTE-------CVDVDECSPRNAGGPCANGGTCNTLGSFGGFRCA  342 (487)
T ss_pred             eccccCCCCccCCCCeeecCCCcceeeCCCCCCCCCCcc-------ccccccccccccCCcCCCCcccccCCCCCCCCcC
Confidence            788998754 99999999999999999999999999811       0113445    344577774 8444433678899


Q ss_pred             cCCCCcCCCCCCC
Q psy15407        587 CAPGYSGKESLLQ  599 (604)
Q Consensus       587 C~~G~~G~~C~~~  599 (604)
                      |..||.|..|+..
T Consensus       343 c~~~~~g~~C~~~  355 (487)
T KOG1217|consen  343 CGPGFTGRRCEDS  355 (487)
T ss_pred             CCCCCCCCccccC
Confidence            9999999999865

>KOG1217|consensus

Probab=99.59  E-value=3.7e-14  Score=153.63  Aligned_cols=223  Identities=37%  Similarity=0.899  Sum_probs=174.2

Q ss_pred             CceeecCcccccc---cccCCCCc--CCCCCCCCeeecCCCCceeeeCCCCCcCCCCcccCCCCCCCCCCCCCeeeeCCC
Q psy15407        342 SSFQCKEKVSDEI---LSKCNACY--KSPCTNQGVCEPLPERQYQCRCTPGYHGQHCEFMIDACYGNPCRNSGTCKLLEE  416 (604)
Q Consensus       342 ~~~~C~~~~~~~~---~~~c~~C~--~~~C~~~g~C~~~~~~~~~C~C~~g~~G~~c~~~~~~C~~~~C~~~~~C~~~~~  416 (604)
                      ..+.|....++..   ....+.|.  ..+|.+++.|.+.. +.|.|.|+.||.|..|+..         .+.+.|...  
T Consensus       150 ~~~~c~C~~g~~~~~~~~~~~~C~~~~~~c~~~~~C~~~~-~~~~C~c~~~~~~~~~~~~---------~~~~~c~~~--  217 (487)
T KOG1217|consen  150 GPFRCSCTEGYEGEPCETDLDECIQYSSPCQNGGTCVNTG-GSYLCSCPPGYTGSTCETT---------GNGGTCVDS--  217 (487)
T ss_pred             CceeeeeCCCcccccccccccccccCCCCcCCCcccccCC-CCeeEeCCCCccCCcCcCC---------CCCceEecc--
Confidence            4566655544432   22335787  44699999999876 4599999999999999854         445667542  


Q ss_pred             CceEeeCCCCCcCCCCCcCCCcCCCCCCCCCcEEEeCCCCeEEecCCCCCCCC--cccCCCcCCCCCCCCCCCCceeecC
Q psy15407        417 GRFNCECAPGYTGDRCEINIDDCLSHKCENNATCVDLIQAYECRCAPGFQGEF--CQTKTPFCAGEYNPCRNGARCLDHF  494 (604)
Q Consensus       417 ~~~~C~C~~g~~g~~C~~~~~~C~~~~C~~~~~C~~~~~~~~C~C~~g~~g~~--C~~~~~~C~~~~~~C~~~~~C~~~~  494 (604)
                        +.|.+..|+.+..|+..+.+|...   + ++|++..++|.|.|++||.+..  ...+++.|..... |.++++|++..
T Consensus       218 --~~~~~~~g~~~~~c~~~~~~~~~~---~-~~c~~~~~~~~C~~~~g~~~~~~~~~~~~~~C~~~~~-c~~~~~C~~~~  290 (487)
T KOG1217|consen  218 --VACSCPPGARGPECEVSIVECASG---D-GTCVNTVGSYTCRCPEGYTGDACVTCVDVDSCALIAS-CPNGGTCVNVP  290 (487)
T ss_pred             --eeccCCCCCCCCCcccccccccCC---C-CcccccCCceeeeCCCCccccccceeeeccccCCCCc-cCCCCeeecCC
Confidence              679999999999999888887665   5 8999999999999999999986  3456788887654 99999999998


Q ss_pred             CCeEEecCCCCcCCcC--cccCCCC----CCCCCCCCCEE--eeCCCCeEeeeCCCCccCCCCcCcccccCCCCCCCCCC
Q psy15407        495 SHYTCECTPGFSGVNC--TVNVDDC----VNHMCQNGGTC--VDGINDYTCKCEGDFVGKFCEIAPFVAMMYPQTSPCQH  566 (604)
Q Consensus       495 ~~~~C~C~~g~~g~~c--~~~~~~C----~~~~C~~~~~C--~~~~~~y~C~C~~G~~G~~C~~~~~~~~~~~~~~~C~~  566 (604)
                      +.|.|.|++||.|..|  ..+..+|    ...+|..+++|  ....+.|.|.|..||.|..|+..         .+.|..
T Consensus       291 ~~~~C~C~~g~~g~~~~~~~~~~~C~~~~~~~~c~~g~~C~~~~~~~~~~C~c~~~~~g~~C~~~---------~~~C~~  361 (487)
T KOG1217|consen  291 GSYRCTCPPGFTGRLCTECVDVDECSPRNAGGPCANGGTCNTLGSFGGFRCACGPGFTGRRCEDS---------NDECAS  361 (487)
T ss_pred             CcceeeCCCCCCCCCCccccccccccccccCCcCCCCcccccCCCCCCCCcCCCCCCCCCccccC---------CccccC
Confidence            8899999999999998  3345677    35679998899  34456788999999999999963         146766


Q ss_pred             CCCCCCc-eeC-CCCCCCeeeecCCCCcCC
Q psy15407        567 HDCKNGI-CFQ-PQGSNDYLCKCAPGYSGK  594 (604)
Q Consensus       567 ~~C~~g~-C~~-~~g~~~~~C~C~~G~~G~  594 (604)
                      ..|.+++ |++ ..  ++|.|.|+.||.|.
T Consensus       362 ~~~~~~~~c~~~~~--~~~~c~~~~~~~~~  389 (487)
T KOG1217|consen  362 SPCCPGGTCVNETP--GSYRCACPAGFAGK  389 (487)
T ss_pred             CccccCCEeccCCC--CCeEecCCCccccC
Confidence            6566655 988 56  78999999999985

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.58  E-value=4.2e-15  Score=164.45  Aligned_cols=189  Identities=22%  Similarity=0.225  Sum_probs=107.5

Q ss_pred             CCeEEcCCCCCCcCCCCCCccCcEEecCCCcceeecCCCccCCCCCCcEEeCCCCcceecCCCcCCCcccCCcCCCCCCC
Q psy15407         96 GTRVDCSQRGLKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDNYCP  175 (604)
Q Consensus        96 ~~~l~cs~~~L~~iP~~l~~~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~l~~~~  175 (604)
                      .+.|++++++|++||..+|..++.|+|++|+|+.||.. ++   ++|++|+|++|+|+.|+...+   .+|+.|+|++|.
T Consensus       180 ~~~L~L~~~~LtsLP~~Ip~~L~~L~Ls~N~LtsLP~~-l~---~nL~~L~Ls~N~LtsLP~~l~---~~L~~L~Ls~N~  252 (754)
T PRK15370        180 KTELRLKILGLTTIPACIPEQITTLILDNNELKSLPEN-LQ---GNIKTLYANSNQLTSIPATLP---DTIQEMELSINR  252 (754)
T ss_pred             ceEEEeCCCCcCcCCcccccCCcEEEecCCCCCcCChh-hc---cCCCEEECCCCccccCChhhh---ccccEEECcCCc
Confidence            46789999999999988888899999999999988763 22   578888999888888865433   356777777776


Q ss_pred             CCccc-----cccEEEccCCccccccccccce-------eeeeeccccCCccccceeecCCCCceeeccCCCCCCCCCCC
Q psy15407        176 PKCTC-----TVRVLFYDGRAGECYIAVELFS-------SRIRVSYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLS  243 (604)
Q Consensus       176 ~~~~~-----~l~~l~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~L~~L~Ls~N~i~~l~~~~f~~l~~L~  243 (604)
                      +..++     .|..+.++.+.... ++..+..       +...+..++..++.+|+.|+|++|+|+.++...   .++|+
T Consensus       253 L~~LP~~l~s~L~~L~Ls~N~L~~-LP~~l~~sL~~L~Ls~N~Lt~LP~~lp~sL~~L~Ls~N~Lt~LP~~l---~~sL~  328 (754)
T PRK15370        253 ITELPERLPSALQSLDLFHNKISC-LPENLPEELRYLSVYDNSIRTLPAHLPSGITHLNVQSNSLTALPETL---PPGLK  328 (754)
T ss_pred             cCcCChhHhCCCCEEECcCCccCc-cccccCCCCcEEECCCCccccCcccchhhHHHHHhcCCccccCCccc---cccce
Confidence            54432     24444443332210 1110000       001111111122234455555555555444322   13555


Q ss_pred             eEEecCCcceeeeccccCCCCcccEEEccCCccccCCcccccCcccceeeeccCCCcc
Q psy15407        244 QLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIGGNPLY  301 (604)
Q Consensus       244 ~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~Npl~  301 (604)
                      .|+|++|.|+.|+.. +  .++|+.|+|++|+|+.+|...   .++|+.|+|++|.+.
T Consensus       329 ~L~Ls~N~Lt~LP~~-l--~~sL~~L~Ls~N~L~~LP~~l---p~~L~~LdLs~N~Lt  380 (754)
T PRK15370        329 TLEAGENALTSLPAS-L--PPELQVLDVSKNQITVLPETL---PPTITTLDVSRNALT  380 (754)
T ss_pred             eccccCCccccCChh-h--cCcccEEECCCCCCCcCChhh---cCCcCEEECCCCcCC
Confidence            666666666655332 2  145666666666666655432   235666666666554

>KOG0617|consensus

Probab=99.56  E-value=6.6e-17  Score=139.96  Aligned_cols=161  Identities=24%  Similarity=0.327  Sum_probs=129.2

Q ss_pred             CcCCCCC-CccCcEEecCCCcceeecCCCccCCCCCCcEEeCCCCcceecCCCcCCCcccCCcCCCCCCCCCccccccEE
Q psy15407        107 KEIPKDI-PLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDNYCPPKCTCTVRVL  185 (604)
Q Consensus       107 ~~iP~~l-~~~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~l~~~~~~~~~~l~~l  185 (604)
                      .++|.-+ .+.++.|.|++|+|+.+|+.  +..|.+|+.|+|++|+|+.++. ..+.|++|+.|.+..|...        
T Consensus        24 ~~~~gLf~~s~ITrLtLSHNKl~~vppn--ia~l~nlevln~~nnqie~lp~-~issl~klr~lnvgmnrl~--------   92 (264)
T KOG0617|consen   24 EELPGLFNMSNITRLTLSHNKLTVVPPN--IAELKNLEVLNLSNNQIEELPT-SISSLPKLRILNVGMNRLN--------   92 (264)
T ss_pred             hhcccccchhhhhhhhcccCceeecCCc--HHHhhhhhhhhcccchhhhcCh-hhhhchhhhheecchhhhh--------
Confidence            3556544 45679999999999999986  8999999999999999999976 4677888888776643321        


Q ss_pred             EccCCccccccccccceeeeeeccccCCccccceeecCCCCceee-ccCCCCCCCCCCCeEEecCCcceeeeccccCCCC
Q psy15407        186 FYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGF-LSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLK  264 (604)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~i~~-l~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~  264 (604)
                                          .+..-.+.+| .|+.|||++|++.+ .-++.|-.+..|+.|+|++|.+.-+++ ..+.|+
T Consensus        93 --------------------~lprgfgs~p-~levldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~-dvg~lt  150 (264)
T KOG0617|consen   93 --------------------ILPRGFGSFP-ALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPP-DVGKLT  150 (264)
T ss_pred             --------------------cCccccCCCc-hhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCCh-hhhhhc
Confidence                                1122223344 88999999999875 335567778999999999999998865 478899


Q ss_pred             cccEEEccCCccccCCcccccCcccceeeeccCCCcc
Q psy15407        265 SLRIISLHGNDISMIPEGAFADLHAITHLAIGGNPLY  301 (604)
Q Consensus       265 ~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~Npl~  301 (604)
                      +|+.|.|..|.|-++|.+ +..|..|++|.+.+|.+.
T Consensus       151 ~lqil~lrdndll~lpke-ig~lt~lrelhiqgnrl~  186 (264)
T KOG0617|consen  151 NLQILSLRDNDLLSLPKE-IGDLTRLRELHIQGNRLT  186 (264)
T ss_pred             ceeEEeeccCchhhCcHH-HHHHHHHHHHhcccceee
Confidence            999999999999999885 788999999999999886

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.54  E-value=9.3e-15  Score=161.76  Aligned_cols=77  Identities=17%  Similarity=0.197  Sum_probs=44.0

Q ss_pred             ccceeecCCCCceeeccCCCCCCCCCCCeEEecCCcceeeeccccCCCCcccEEEccCCccccCCcccccCcccceeeec
Q psy15407        216 VSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAI  295 (604)
Q Consensus       216 ~~L~~L~Ls~N~i~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L  295 (604)
                      .+|+.|+|++|.|+.++...   .++|+.|+|++|+|+.++. .+  .++|+.|+|++|+|+.||+...   .+|+.|++
T Consensus       325 ~sL~~L~Ls~N~Lt~LP~~l---~~sL~~L~Ls~N~L~~LP~-~l--p~~L~~LdLs~N~Lt~LP~~l~---~sL~~LdL  395 (754)
T PRK15370        325 PGLKTLEAGENALTSLPASL---PPELQVLDVSKNQITVLPE-TL--PPTITTLDVSRNALTNLPENLP---AALQIMQA  395 (754)
T ss_pred             ccceeccccCCccccCChhh---cCcccEEECCCCCCCcCCh-hh--cCCcCEEECCCCcCCCCCHhHH---HHHHHHhh
Confidence            46666677777666665422   2466666666666666543 22  2456666666666666665422   23555555


Q ss_pred             cCCCcc
Q psy15407        296 GGNPLY  301 (604)
Q Consensus       296 ~~Npl~  301 (604)
                      ++|.|.
T Consensus       396 s~N~L~  401 (754)
T PRK15370        396 SRNNLV  401 (754)
T ss_pred             ccCCcc
Confidence            555543

>KOG0472|consensus

Probab=99.50  E-value=6.5e-16  Score=150.64  Aligned_cols=171  Identities=21%  Similarity=0.331  Sum_probs=115.8

Q ss_pred             CeEEcCCCCCCcCCCCCCc-----cCcEEecCCCcceeecCCCccCCCCCCcE-EeCCCCcceecCCCcCCCcccCCcCC
Q psy15407         97 TRVDCSQRGLKEIPKDIPL-----YTTELILNDNEIGKIKSDGLFGRLPNLIK-LDLRRNQVTGIEDNAFEGENDQGCLG  170 (604)
Q Consensus        97 ~~l~cs~~~L~~iP~~l~~-----~~~~L~L~~N~i~~i~~~~~f~~l~~L~~-L~Ls~N~i~~i~~~~f~~l~~L~~L~  170 (604)
                      ++|+.+..+++.||..++.     .++..+|+.|+|.++|..  +..++.|.+ |.|++|+|..+ +..+..+++|..|+
T Consensus       365 kiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~--L~~lkelvT~l~lsnn~isfv-~~~l~~l~kLt~L~  441 (565)
T KOG0472|consen  365 KILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKR--LVELKELVTDLVLSNNKISFV-PLELSQLQKLTFLD  441 (565)
T ss_pred             hhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhh--hHHHHHHHHHHHhhcCccccc-hHHHHhhhcceeee
Confidence            4566677777777765532     245667777777666653  444544433 34444444433 33445555666666


Q ss_pred             CCCCCCCccccccEEEccCCccccccccccceeeeeeccccCCccccceeecCCCCceeeccCCCCCCCCCCCeEEecCC
Q psy15407        171 DNYCPPKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYN  250 (604)
Q Consensus       171 l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~i~~l~~~~f~~l~~L~~L~Ls~N  250 (604)
                      |++|+...++.-                            .+. ...|+.||||+|++..+|. ..-.+..|+.+..++|
T Consensus       442 L~NN~Ln~LP~e----------------------------~~~-lv~Lq~LnlS~NrFr~lP~-~~y~lq~lEtllas~n  491 (565)
T KOG0472|consen  442 LSNNLLNDLPEE----------------------------MGS-LVRLQTLNLSFNRFRMLPE-CLYELQTLETLLASNN  491 (565)
T ss_pred             cccchhhhcchh----------------------------hhh-hhhhheecccccccccchH-HHhhHHHHHHHHhccc
Confidence            665543221110                            000 1268889999999888876 3344556777777779


Q ss_pred             cceeeeccccCCCCcccEEEccCCccccCCcccccCcccceeeeccCCCcc
Q psy15407        251 KLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIGGNPLY  301 (604)
Q Consensus       251 ~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~Npl~  301 (604)
                      +|..++++.+.+|.+|.+|||.+|.|..||+ .++++.+|++|+|.||||+
T Consensus       492 qi~~vd~~~l~nm~nL~tLDL~nNdlq~IPp-~LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  492 QIGSVDPSGLKNMRNLTTLDLQNNDLQQIPP-ILGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             cccccChHHhhhhhhcceeccCCCchhhCCh-hhccccceeEEEecCCccC
Confidence            9999999889999999999999999999998 4899999999999999997

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.49  E-value=5.4e-15  Score=134.08  Aligned_cols=83  Identities=33%  Similarity=0.415  Sum_probs=26.2

Q ss_pred             cceeecCCCCceeeccCCCCCCCCCCCeEEecCCcceeeeccccCCCCcccEEEccCCccccCCc-ccccCcccceeeec
Q psy15407        217 STMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPE-GAFADLHAITHLAI  295 (604)
Q Consensus       217 ~L~~L~Ls~N~i~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~-~~f~~l~~L~~L~L  295 (604)
                      +|+.|+|++|.|+.+..  |..++.|++|+|++|+|+.+.......+++|++|+|++|+|..+.. ..+..+++|+.|+|
T Consensus        43 ~L~~L~Ls~N~I~~l~~--l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L  120 (175)
T PF14580_consen   43 KLEVLDLSNNQITKLEG--LPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSL  120 (175)
T ss_dssp             T--EEE-TTS--S--TT------TT--EEE--SS---S-CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-
T ss_pred             CCCEEECCCCCCccccC--ccChhhhhhcccCCCCCCccccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeec
Confidence            44445555555555442  4445555666666666655532222345556666666666655433 23445566666666


Q ss_pred             cCCCcc
Q psy15407        296 GGNPLY  301 (604)
Q Consensus       296 ~~Npl~  301 (604)
                      .+||+.
T Consensus       121 ~~NPv~  126 (175)
T PF14580_consen  121 EGNPVC  126 (175)
T ss_dssp             TT-GGG
T ss_pred             cCCccc
Confidence            666653

>KOG0472|consensus

Probab=99.47  E-value=6e-16  Score=150.87  Aligned_cols=193  Identities=26%  Similarity=0.323  Sum_probs=134.5

Q ss_pred             eEEcCCCCCCcCCCCCCc--cCcEEecCCCcceeecCCCccCCCCCCcEEeCCCCcceecCCCcCCCcccCCcCCCCCCC
Q psy15407         98 RVDCSQRGLKEIPKDIPL--YTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDNYCP  175 (604)
Q Consensus        98 ~l~cs~~~L~~iP~~l~~--~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~l~~~~  175 (604)
                      .++.++|++.++|..+..  .++.|+++.|++..++++  |+.+..|..|+..+|+|+.++++. ..+.+|..|++.+|.
T Consensus        95 ~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~~~el~~~--i~~~~~l~dl~~~~N~i~slp~~~-~~~~~l~~l~~~~n~  171 (565)
T KOG0472|consen   95 SLNVSHNKLSELPEQIGSLISLVKLDCSSNELKELPDS--IGRLLDLEDLDATNNQISSLPEDM-VNLSKLSKLDLEGNK  171 (565)
T ss_pred             HhhcccchHhhccHHHhhhhhhhhhhccccceeecCch--HHHHhhhhhhhccccccccCchHH-HHHHHHHHhhccccc
Confidence            467788888888877643  446778888888888764  777778888888888888776643 345556666666654


Q ss_pred             CCcc-------ccccEEEccCCccc--------------cccccccceeeeeeccccCCccccceeecCCCCceeeccCC
Q psy15407        176 PKCT-------CTVRVLFYDGRAGE--------------CYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSNF  234 (604)
Q Consensus       176 ~~~~-------~~l~~l~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~i~~l~~~  234 (604)
                      ...+       ..++.++...+..+              +++..+.+.   .++.|.+.  ..|.+|+++.|+|..++..
T Consensus       172 l~~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~---~lPef~gc--s~L~Elh~g~N~i~~lpae  246 (565)
T KOG0472|consen  172 LKALPENHIAMKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNKIR---FLPEFPGC--SLLKELHVGENQIEMLPAE  246 (565)
T ss_pred             hhhCCHHHHHHHHHHhcccchhhhhcCChhhcchhhhHHHHhhhcccc---cCCCCCcc--HHHHHHHhcccHHHhhHHH
Confidence            3322       12333333322221              111111111   11222221  2678889999999999998


Q ss_pred             CCCCCCCCCeEEecCCcceeeeccccCCCCcccEEEccCCccccCCcccccCcccceeeeccCCCcc
Q psy15407        235 TFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIGGNPLY  301 (604)
Q Consensus       235 ~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~Npl~  301 (604)
                      ...++++|..|||..|+|+++| +.+--|++|..||||+|.|+.+|.. +++| .|+.|.|.|||+.
T Consensus       247 ~~~~L~~l~vLDLRdNklke~P-de~clLrsL~rLDlSNN~is~Lp~s-Lgnl-hL~~L~leGNPlr  310 (565)
T KOG0472|consen  247 HLKHLNSLLVLDLRDNKLKEVP-DEICLLRSLERLDLSNNDISSLPYS-LGNL-HLKFLALEGNPLR  310 (565)
T ss_pred             HhcccccceeeeccccccccCc-hHHHHhhhhhhhcccCCccccCCcc-cccc-eeeehhhcCCchH
Confidence            8899999999999999999995 4556689999999999999999984 7888 8999999999986

>KOG1214|consensus

Probab=99.46  E-value=8.6e-13  Score=137.94  Aligned_cols=188  Identities=27%  Similarity=0.736  Sum_probs=135.5

Q ss_pred             CCCCCeeeeCCCCceEeeCCCCCcC--CCCCcCCCcCCC--CCCCCCcEEEeCCCCeEEecCCCCC--C--CCcc-----
Q psy15407        405 CRNSGTCKLLEEGRFNCECAPGYTG--DRCEINIDDCLS--HKCENNATCVDLIQAYECRCAPGFQ--G--EFCQ-----  471 (604)
Q Consensus       405 C~~~~~C~~~~~~~~~C~C~~g~~g--~~C~~~~~~C~~--~~C~~~~~C~~~~~~~~C~C~~g~~--g--~~C~-----  471 (604)
                      |.-++.|...+.-.|.|.|..||.|  ..|. ++++|+.  ..|..++.|++.+++|+|.|..||.  +  ..|-     
T Consensus       702 cdt~a~C~pg~~~~~tcecs~g~~gdgr~c~-d~~eca~~~~~CGp~s~Cin~pg~~rceC~~gy~F~dd~~tCV~i~~p  780 (1289)
T KOG1214|consen  702 CDTTARCHPGTGVDYTCECSSGYQGDGRNCV-DENECATGFHRCGPNSVCINLPGSYRCECRSGYEFADDRHTCVLITPP  780 (1289)
T ss_pred             cCCCccccCCCCcceEEEEeeccCCCCCCCC-ChhhhccCCCCCCCCceeecCCCceeEEEeecceeccCCcceEEecCC
Confidence            4455677766667899999999986  4674 7888885  5699999999999999999999986  3  3453     


Q ss_pred             cCCCcCCCCCCCCCCCCce--eec-CCCeEEecCCCCcCC--cCcccCCCCCCCCCCCCCEEeeCCCCeEeeeCCCCccC
Q psy15407        472 TKTPFCAGEYNPCRNGARC--LDH-FSHYTCECTPGFSGV--NCTVNVDDCVNHMCQNGGTCVDGINDYTCKCEGDFVGK  546 (604)
Q Consensus       472 ~~~~~C~~~~~~C~~~~~C--~~~-~~~~~C~C~~g~~g~--~c~~~~~~C~~~~C~~~~~C~~~~~~y~C~C~~G~~G~  546 (604)
                      ...+.|....+.|...+.|  +.. .++|.|.|.|||.|+  .|. ++|+|.++.|...+.|++++|++.|.|.+||.|+
T Consensus       781 ap~n~Ce~g~h~C~i~g~a~c~~hGgs~y~C~CLPGfsGDG~~c~-dvDeC~psrChp~A~CyntpgsfsC~C~pGy~GD  859 (1289)
T KOG1214|consen  781 APANPCEDGSHTCAIAGQARCVHHGGSTYSCACLPGFSGDGHQCT-DVDECSPSRCHPAATCYNTPGSFSCRCQPGYYGD  859 (1289)
T ss_pred             CCCCccccCccccCcCCceEEEecCCceEEEeecCCccCCccccc-cccccCccccCCCceEecCCCcceeecccCccCC
Confidence            2345677777788766654  443 356999999999865  454 7799999999999999999999999999999977


Q ss_pred             CCCcCcccccCCCCCCCCCC-----CCCCCCc----eeCCCCCCCeeeecCCCCcC---CCCCCCcc
Q psy15407        547 FCEIAPFVAMMYPQTSPCQH-----HDCKNGI----CFQPQGSNDYLCKCAPGYSG---KESLLQQT  601 (604)
Q Consensus       547 ~C~~~~~~~~~~~~~~~C~~-----~~C~~g~----C~~~~g~~~~~C~C~~G~~G---~~C~~~~~  601 (604)
                      .-...+.    .....+|+.     ..|+..+    |+++   ..|.|.|.++=.|   .+|.+...
T Consensus       860 Gf~CVP~----~~~~T~C~~er~hpl~chg~t~~~~~~Dp---~~~e~p~~~~ppG~~~~~c~~~~~  919 (1289)
T KOG1214|consen  860 GFQCVPD----TSSLTPCEQERFHPLQCHGSTGFCWCVDP---DGHEVPGTQTPPGSTPPHCGPSPE  919 (1289)
T ss_pred             CceecCC----CccCCccccccccceeeccccceeEeeCC---CcccCCCCCCCCCCCCCCCCCccc
Confidence            5332211    112345542     2254433    3443   4578888777666   56665544

>KOG0618|consensus

Probab=99.41  E-value=2.4e-15  Score=160.77  Aligned_cols=82  Identities=29%  Similarity=0.375  Sum_probs=68.4

Q ss_pred             cceeecCCCCceeeccCCCCCCCCCCCeEEecCCcceeeeccccCCCCcccEEEccCCccccCCcccccCcccceeeecc
Q psy15407        217 STMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIG  296 (604)
Q Consensus       217 ~L~~L~Ls~N~i~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~  296 (604)
                      +|+.|+|++|+|..++...+.+|+.|++|+||+|+|+.|+ +....+..|++|...+|+|..+|+  +..++.|+.|||+
T Consensus       384 hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp-~tva~~~~L~tL~ahsN~l~~fPe--~~~l~qL~~lDlS  460 (1081)
T KOG0618|consen  384 HLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLP-DTVANLGRLHTLRAHSNQLLSFPE--LAQLPQLKVLDLS  460 (1081)
T ss_pred             ceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhh-HHHHhhhhhHHHhhcCCceeechh--hhhcCcceEEecc
Confidence            7888888888888888888888888888888888888885 777788888888888888888883  7788888889988


Q ss_pred             CCCcc
Q psy15407        297 GNPLY  301 (604)
Q Consensus       297 ~Npl~  301 (604)
                      .|.+.
T Consensus       461 ~N~L~  465 (1081)
T KOG0618|consen  461 CNNLS  465 (1081)
T ss_pred             cchhh
Confidence            88775

>KOG0618|consensus

Probab=99.41  E-value=3.5e-15  Score=159.57  Aligned_cols=198  Identities=21%  Similarity=0.199  Sum_probs=103.0

Q ss_pred             CeEEcCCCCCCcCCCCC--CccCcEEecCCCcceeecCCCccCCCCCCcEEeCCCCcceecCCCcCCCcccCCcCCCCCC
Q psy15407         97 TRVDCSQRGLKEIPKDI--PLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDNYC  174 (604)
Q Consensus        97 ~~l~cs~~~L~~iP~~l--~~~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~l~~~  174 (604)
                      +.+|+++++|+.+|+.+  ..+++.|.+.+|+|..++..  ...+++|+.|.+.+|.|+.|++ ...++..|++|+|..|
T Consensus       244 ~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~~lp~r--i~~~~~L~~l~~~~nel~yip~-~le~~~sL~tLdL~~N  320 (1081)
T KOG0618|consen  244 QYLDISHNNLSNLPEWIGACANLEALNANHNRLVALPLR--ISRITSLVSLSAAYNELEYIPP-FLEGLKSLRTLDLQSN  320 (1081)
T ss_pred             eeeecchhhhhcchHHHHhcccceEecccchhHHhhHHH--HhhhhhHHHHHhhhhhhhhCCC-cccccceeeeeeehhc
Confidence            56788888888888665  35667777777777766543  3444555555555555555443 1233444444444444


Q ss_pred             CCCccccccE--EEc-------c---------------CCccccccccccce------------------eeeeeccccC
Q psy15407        175 PPKCTCTVRV--LFY-------D---------------GRAGECYIAVELFS------------------SRIRVSYYVG  212 (604)
Q Consensus       175 ~~~~~~~l~~--l~~-------~---------------~~~~~~~~~~~~~~------------------~~~~~~~~~~  212 (604)
                      .+..++.+..  +..       +               ..+.++++..|.+.                  +.+.+..|+.
T Consensus       321 ~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpa  400 (1081)
T KOG0618|consen  321 NLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPA  400 (1081)
T ss_pred             cccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCH
Confidence            3222221000  000       0               00011111111111                  0011111111


Q ss_pred             C---ccccceeecCCCCceeeccCCCCCCCCCCCeEEecCCcceeeeccccCCCCcccEEEccCCccccCCcccccCccc
Q psy15407        213 N---YPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHA  289 (604)
Q Consensus       213 ~---~~~~L~~L~Ls~N~i~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~  289 (604)
                      .   ....|+.|+||+|+++.|+ .....+..|++|....|+|..+|  .+..++.|+.|||+.|+|+.+.-..-...++
T Consensus       401 s~~~kle~LeeL~LSGNkL~~Lp-~tva~~~~L~tL~ahsN~l~~fP--e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~  477 (1081)
T KOG0618|consen  401 SKLRKLEELEELNLSGNKLTTLP-DTVANLGRLHTLRAHSNQLLSFP--ELAQLPQLKVLDLSCNNLSEVTLPEALPSPN  477 (1081)
T ss_pred             HHHhchHHhHHHhcccchhhhhh-HHHHhhhhhHHHhhcCCceeech--hhhhcCcceEEecccchhhhhhhhhhCCCcc
Confidence            0   0124666777777777776 35666777777777777777764  4666777777777777776443322222366


Q ss_pred             ceeeeccCCCc
Q psy15407        290 ITHLAIGGNPL  300 (604)
Q Consensus       290 L~~L~L~~Npl  300 (604)
                      |++|||+||+|
T Consensus       478 LkyLdlSGN~~  488 (1081)
T KOG0618|consen  478 LKYLDLSGNTR  488 (1081)
T ss_pred             cceeeccCCcc
Confidence            77777777775

>KOG1214|consensus

Probab=99.39  E-value=9.2e-12  Score=130.39  Aligned_cols=176  Identities=28%  Similarity=0.752  Sum_probs=123.1

Q ss_pred             CCCCCCeeecCCCCceeeeCCCCCcC--CCCcccCCCCCCC--CCCCCCeeeeCCCCceEeeCCCCCc--C--CCCCc--
Q psy15407        365 PCTNQGVCEPLPERQYQCRCTPGYHG--QHCEFMIDACYGN--PCRNSGTCKLLEEGRFNCECAPGYT--G--DRCEI--  434 (604)
Q Consensus       365 ~C~~~g~C~~~~~~~~~C~C~~g~~G--~~c~~~~~~C~~~--~C~~~~~C~~~~~~~~~C~C~~g~~--g--~~C~~--  434 (604)
                      -|..+..|...+...|+|.|..||.|  ..|. ++++|...  .|..++.|++ ..++|+|.|..||.  +  ..|-.  
T Consensus       701 ~cdt~a~C~pg~~~~~tcecs~g~~gdgr~c~-d~~eca~~~~~CGp~s~Cin-~pg~~rceC~~gy~F~dd~~tCV~i~  778 (1289)
T KOG1214|consen  701 MCDTTARCHPGTGVDYTCECSSGYQGDGRNCV-DENECATGFHRCGPNSVCIN-LPGSYRCECRSGYEFADDRHTCVLIT  778 (1289)
T ss_pred             ccCCCccccCCCCcceEEEEeeccCCCCCCCC-ChhhhccCCCCCCCCceeec-CCCceeEEEeecceeccCCcceEEec
Confidence            35666788877777899999999974  5776 56788653  4999999988 47899999999875  3  34542  


Q ss_pred             ---CCCcCCC--CCCCCCc--EEEeC-CCCeEEecCCCCCCC--CcccCCCcCCCCCCCCCCCCceeecCCCeEEecCCC
Q psy15407        435 ---NIDDCLS--HKCENNA--TCVDL-IQAYECRCAPGFQGE--FCQTKTPFCAGEYNPCRNGARCLDHFSHYTCECTPG  504 (604)
Q Consensus       435 ---~~~~C~~--~~C~~~~--~C~~~-~~~~~C~C~~g~~g~--~C~~~~~~C~~~~~~C~~~~~C~~~~~~~~C~C~~g  504 (604)
                         .++.|..  +.|.-.+  .|+.. .+.|.|.|.+||.|+  .|. +.++|.+  +.|...+.|+++++++.|.|.+|
T Consensus       779 ~pap~n~Ce~g~h~C~i~g~a~c~~hGgs~y~C~CLPGfsGDG~~c~-dvDeC~p--srChp~A~CyntpgsfsC~C~pG  855 (1289)
T KOG1214|consen  779 PPAPANPCEDGSHTCAIAGQARCVHHGGSTYSCACLPGFSGDGHQCT-DVDECSP--SRCHPAATCYNTPGSFSCRCQPG  855 (1289)
T ss_pred             CCCCCCccccCccccCcCCceEEEecCCceEEEeecCCccCCccccc-cccccCc--cccCCCceEecCCCcceeecccC
Confidence               3344543  3455444  45543 456999999999976  564 5689975  58999999999999999999999


Q ss_pred             CcCCc--Cccc---CCCCCC---CC--CCCCCEE---eeCCCCeEeeeCCCCccC
Q psy15407        505 FSGVN--CTVN---VDDCVN---HM--CQNGGTC---VDGINDYTCKCEGDFVGK  546 (604)
Q Consensus       505 ~~g~~--c~~~---~~~C~~---~~--C~~~~~C---~~~~~~y~C~C~~G~~G~  546 (604)
                      |.|+.  |-.+   ...|..   ||  |...+.|   ++ +.+|.|.|.++--|.
T Consensus       856 y~GDGf~CVP~~~~~T~C~~er~hpl~chg~t~~~~~~D-p~~~e~p~~~~ppG~  909 (1289)
T KOG1214|consen  856 YYGDGFQCVPDTSSLTPCEQERFHPLQCHGSTGFCWCVD-PDGHEVPGTQTPPGS  909 (1289)
T ss_pred             ccCCCceecCCCccCCccccccccceeeccccceeEeeC-CCcccCCCCCCCCCC
Confidence            99754  4322   122332   22  4444433   33 456888887766664

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.39  E-value=1.5e-13  Score=124.66  Aligned_cols=140  Identities=31%  Similarity=0.392  Sum_probs=55.1

Q ss_pred             EEcCCCCCCcCCCCC-CccCcEEecCCCcceeecCCCccC-CCCCCcEEeCCCCcceecCCCcCCCcccCCcCCCCCCCC
Q psy15407         99 VDCSQRGLKEIPKDI-PLYTTELILNDNEIGKIKSDGLFG-RLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDNYCPP  176 (604)
Q Consensus        99 l~cs~~~L~~iP~~l-~~~~~~L~L~~N~i~~i~~~~~f~-~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~l~~~~~  176 (604)
                      |.++.+.|..+|... +...++|+|++|.|+.|..   ++ .|.+|+.|+|++|.|+.|+.  |..+.            
T Consensus         2 ~~lt~~~i~~~~~~~n~~~~~~L~L~~n~I~~Ie~---L~~~l~~L~~L~Ls~N~I~~l~~--l~~L~------------   64 (175)
T PF14580_consen    2 VRLTANMIEQIAQYNNPVKLRELNLRGNQISTIEN---LGATLDKLEVLDLSNNQITKLEG--LPGLP------------   64 (175)
T ss_dssp             ----------------------------------S-----TT-TT--EEE-TTS--S--TT------T------------
T ss_pred             ccccccccccccccccccccccccccccccccccc---hhhhhcCCCEEECCCCCCccccC--ccChh------------
Confidence            566777788888755 5667999999999999964   55 68999999999999999863  44332            


Q ss_pred             CccccccEEEccCCccccccccccceeeeeeccccCCccccceeecCCCCceeeccCCCCCCCCCCCeEEecCCcceeee
Q psy15407        177 KCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCID  256 (604)
Q Consensus       177 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~i~~l~~~~f~~l~~L~~L~Ls~N~l~~i~  256 (604)
                                                              .|+.|+|++|+|+.+.......+++|++|+|++|+|..+.
T Consensus        65 ----------------------------------------~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~N~I~~l~  104 (175)
T PF14580_consen   65 ----------------------------------------RLKTLDLSNNRISSISEGLDKNLPNLQELYLSNNKISDLN  104 (175)
T ss_dssp             ----------------------------------------T--EEE--SS---S-CHHHHHH-TT--EEE-TTS---SCC
T ss_pred             ----------------------------------------hhhhcccCCCCCCccccchHHhCCcCCEEECcCCcCCChH
Confidence                                                    8889999999999996533346899999999999998875


Q ss_pred             c-cccCCCCcccEEEccCCccccCCc---ccccCcccceeeec
Q psy15407        257 R-DALAGLKSLRIISLHGNDISMIPE---GAFADLHAITHLAI  295 (604)
Q Consensus       257 ~-~~f~~l~~L~~L~Ls~N~l~~i~~---~~f~~l~~L~~L~L  295 (604)
                      . ..++.+++|+.|+|.+|.++..+.   .++..+++|+.||-
T Consensus       105 ~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~  147 (175)
T PF14580_consen  105 ELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG  147 (175)
T ss_dssp             CCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred             HhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence            4 567789999999999999987654   24566788887764

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.35  E-value=6.9e-13  Score=146.16  Aligned_cols=173  Identities=21%  Similarity=0.208  Sum_probs=104.8

Q ss_pred             EEcCCCCCCcCCCCCCccCcEEecCCCcceeecCCCccCCCCCCcEEeCCCCcceecCCCcCCCcccCCcCCCCCCCCCc
Q psy15407         99 VDCSQRGLKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDNYCPPKC  178 (604)
Q Consensus        99 l~cs~~~L~~iP~~l~~~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~l~~~~~~~  178 (604)
                      |++++|+|+.||. ++..++.|+|++|+|+.|+..  +   .+|+.|+|++|+|+.|+.  +  ..+|+.|+|++|.+..
T Consensus       287 L~Ls~N~Lt~LP~-~p~~L~~LdLS~N~L~~Lp~l--p---~~L~~L~Ls~N~L~~LP~--l--p~~Lq~LdLS~N~Ls~  356 (788)
T PRK15387        287 LWIFGNQLTSLPV-LPPGLQELSVSDNQLASLPAL--P---SELCKLWAYNNQLTSLPT--L--PSGLQELSVSDNQLAS  356 (788)
T ss_pred             EECcCCccccccc-cccccceeECCCCccccCCCC--c---ccccccccccCccccccc--c--ccccceEecCCCccCC
Confidence            4444444444443 233444555555555444321  1   234444455555544432  1  1355666666665544


Q ss_pred             cccccEEEccCCccccccccccceeeeeeccccCCccccceeecCCCCceeeccCCCCCCCCCCCeEEecCCcceeeecc
Q psy15407        179 TCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRD  258 (604)
Q Consensus       179 ~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~i~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~~  258 (604)
                      ++.+.     .++..+.+..+.+.      .++. .+.+|+.|+|++|+|+.++..    .++|+.|+|++|+|+.|+. 
T Consensus       357 LP~lp-----~~L~~L~Ls~N~L~------~LP~-l~~~L~~LdLs~N~Lt~LP~l----~s~L~~LdLS~N~LssIP~-  419 (788)
T PRK15387        357 LPTLP-----SELYKLWAYNNRLT------SLPA-LPSGLKELIVSGNRLTSLPVL----PSELKELMVSGNRLTSLPM-  419 (788)
T ss_pred             CCCCC-----cccceehhhccccc------cCcc-cccccceEEecCCcccCCCCc----ccCCCEEEccCCcCCCCCc-
Confidence            33211     11112222222222      1211 234799999999999988753    3689999999999999854 


Q ss_pred             ccCCCCcccEEEccCCccccCCcccccCcccceeeeccCCCccc
Q psy15407        259 ALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIGGNPLYC  302 (604)
Q Consensus       259 ~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~Npl~C  302 (604)
                      .   ..+|+.|+|++|+|+.||.. |..+++|+.|+|++|+|.-
T Consensus       420 l---~~~L~~L~Ls~NqLt~LP~s-l~~L~~L~~LdLs~N~Ls~  459 (788)
T PRK15387        420 L---PSGLLSLSVYRNQLTRLPES-LIHLSSETTVNLEGNPLSE  459 (788)
T ss_pred             c---hhhhhhhhhccCcccccChH-HhhccCCCeEECCCCCCCc
Confidence            2   35788999999999999875 7789999999999999974

>KOG1259|consensus

Probab=99.32  E-value=1.5e-13  Score=129.52  Aligned_cols=126  Identities=28%  Similarity=0.341  Sum_probs=104.2

Q ss_pred             cEEecCCCcceeecCCCccCCCCCCcEEeCCCCcceecCCCcCCCcccCCcCCCCCCCCCccccccEEEccCCccccccc
Q psy15407        118 TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDNYCPPKCTCTVRVLFYDGRAGECYIA  197 (604)
Q Consensus       118 ~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~l~~~~~~~~~~l~~l~~~~~~~~~~~~  197 (604)
                      ++|+|++|.|+.|...  ..-+|+++.|+||+|.|..+..-  +.|+                                 
T Consensus       287 telDLS~N~I~~iDES--vKL~Pkir~L~lS~N~i~~v~nL--a~L~---------------------------------  329 (490)
T KOG1259|consen  287 TELDLSGNLITQIDES--VKLAPKLRRLILSQNRIRTVQNL--AELP---------------------------------  329 (490)
T ss_pred             hhccccccchhhhhhh--hhhccceeEEeccccceeeehhh--hhcc---------------------------------
Confidence            7889999999988764  67788999999999999888653  2232                                 


Q ss_pred             cccceeeeeeccccCCccccceeecCCCCceeeccCCCCCCCCCCCeEEecCCcceeeeccccCCCCcccEEEccCCccc
Q psy15407        198 VELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDIS  277 (604)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~i~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~  277 (604)
                                         +|+.||||+|.++.+.. .-..|.+++.|.|+.|.|..+  ..+..|-+|..||+++|+|.
T Consensus       330 -------------------~L~~LDLS~N~Ls~~~G-wh~KLGNIKtL~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie  387 (490)
T KOG1259|consen  330 -------------------QLQLLDLSGNLLAECVG-WHLKLGNIKTLKLAQNKIETL--SGLRKLYSLVNLDLSSNQIE  387 (490)
T ss_pred             -------------------cceEeecccchhHhhhh-hHhhhcCEeeeehhhhhHhhh--hhhHhhhhheeccccccchh
Confidence                               88899999999998865 344688899999999999988  35677889999999999999


Q ss_pred             cCCc-ccccCcccceeeeccCCCccc
Q psy15407        278 MIPE-GAFADLHAITHLAIGGNPLYC  302 (604)
Q Consensus       278 ~i~~-~~f~~l~~L~~L~L~~Npl~C  302 (604)
                      .+.+ ..++.|+-|++|.|.+||+.=
T Consensus       388 ~ldeV~~IG~LPCLE~l~L~~NPl~~  413 (490)
T KOG1259|consen  388 ELDEVNHIGNLPCLETLRLTGNPLAG  413 (490)
T ss_pred             hHHHhcccccccHHHHHhhcCCCccc
Confidence            7765 457889999999999999863

>KOG0532|consensus

Probab=99.31  E-value=3.1e-14  Score=144.89  Aligned_cols=168  Identities=24%  Similarity=0.291  Sum_probs=119.6

Q ss_pred             CeEEcCCCCCCcCCCCC--CccCcEEecCCCcceeecCCCccCCCCCCcEEeCCCCcceecCCCcCCCcccCCcCCCCCC
Q psy15407         97 TRVDCSQRGLKEIPKDI--PLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDNYC  174 (604)
Q Consensus        97 ~~l~cs~~~L~~iP~~l--~~~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~l~~~  174 (604)
                      +.+|++.|++.+||..+  +..+..|.|..|.|..|+..  +.+|..|++|||+.|+|+.++..++. | -|+.|.+++|
T Consensus        78 ~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~--i~~L~~lt~l~ls~NqlS~lp~~lC~-l-pLkvli~sNN  153 (722)
T KOG0532|consen   78 VFADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEA--ICNLEALTFLDLSSNQLSHLPDGLCD-L-PLKVLIVSNN  153 (722)
T ss_pred             hhhhccccccccCchHHHHHHHHHHHHHHhccceecchh--hhhhhHHHHhhhccchhhcCChhhhc-C-cceeEEEecC
Confidence            35666667777666654  34456666777777666653  66677777777777777776665542 1 1222322222


Q ss_pred             CCCccccccEEEccCCccccccccccceeeeeeccccCCccccceeecCCCCceeeccCCCCCCCCCCCeEEecCCccee
Q psy15407        175 PPKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQC  254 (604)
Q Consensus       175 ~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~i~~l~~~~f~~l~~L~~L~Ls~N~l~~  254 (604)
                      .+.                            .+..-.+ ...+|..||.+.|.|..+++ .+..|.+|+.|.+..|++..
T Consensus       154 kl~----------------------------~lp~~ig-~~~tl~~ld~s~nei~slps-ql~~l~slr~l~vrRn~l~~  203 (722)
T KOG0532|consen  154 KLT----------------------------SLPEEIG-LLPTLAHLDVSKNEIQSLPS-QLGYLTSLRDLNVRRNHLED  203 (722)
T ss_pred             ccc----------------------------cCCcccc-cchhHHHhhhhhhhhhhchH-HhhhHHHHHHHHHhhhhhhh
Confidence            211                            1111122 12388899999999999987 68889999999999999999


Q ss_pred             eeccccCCCCcccEEEccCCccccCCcccccCcccceeeeccCCCcc
Q psy15407        255 IDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIGGNPLY  301 (604)
Q Consensus       255 i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~Npl~  301 (604)
                      ++++.. .| .|..||++.|+|+.||.. |..|+.|++|-|.+|||.
T Consensus       204 lp~El~-~L-pLi~lDfScNkis~iPv~-fr~m~~Lq~l~LenNPLq  247 (722)
T KOG0532|consen  204 LPEELC-SL-PLIRLDFSCNKISYLPVD-FRKMRHLQVLQLENNPLQ  247 (722)
T ss_pred             CCHHHh-CC-ceeeeecccCceeecchh-hhhhhhheeeeeccCCCC
Confidence            976544 44 689999999999999985 899999999999999997

>KOG1225|consensus

Probab=99.28  E-value=2.4e-11  Score=126.32  Aligned_cols=131  Identities=38%  Similarity=1.007  Sum_probs=103.3

Q ss_pred             eeeCCCCCcCCCCcccCCCCCCCCCCCCCeeeeCCCCceEeeCCCCCcCCCCCcCCCcCCCCCCCCCcEEEeCCCCeEEe
Q psy15407        381 QCRCTPGYHGQHCEFMIDACYGNPCRNSGTCKLLEEGRFNCECAPGYTGDRCEINIDDCLSHKCENNATCVDLIQAYECR  460 (604)
Q Consensus       381 ~C~C~~g~~G~~c~~~~~~C~~~~C~~~~~C~~~~~~~~~C~C~~g~~g~~C~~~~~~C~~~~C~~~~~C~~~~~~~~C~  460 (604)
                      .|.|+.+|+|..|+.  -.|..+ |.+.+.|...     +|.|++||+|..|..  -.|... |+.++.|++.    .|+
T Consensus       235 ic~c~~~~~g~~c~~--~~C~~~-c~~~g~c~~G-----~CIC~~Gf~G~dC~e--~~Cp~~-cs~~g~~~~g----~Ci  299 (525)
T KOG1225|consen  235 ICECPEGYFGPLCST--IYCPGG-CTGRGQCVEG-----RCICPPGFTGDDCDE--LVCPVD-CSGGGVCVDG----ECI  299 (525)
T ss_pred             eeecCCceeCCcccc--ccCCCC-CcccceEeCC-----eEeCCCCCcCCCCCc--ccCCcc-cCCCceecCC----Eee
Confidence            899999999999983  345443 6667888642     699999999999963  456555 8888888653    799


Q ss_pred             cCCCCCCCCcccCCCcCCCCCCCCCCCCceeecCCCeEEecCCCCcCCcCcccCCCCCCCCCCCCCEEeeCCCCeEeeeC
Q psy15407        461 CAPGFQGEFCQTKTPFCAGEYNPCRNGARCLDHFSHYTCECTPGFSGVNCTVNVDDCVNHMCQNGGTCVDGINDYTCKCE  540 (604)
Q Consensus       461 C~~g~~g~~C~~~~~~C~~~~~~C~~~~~C~~~~~~~~C~C~~g~~g~~c~~~~~~C~~~~C~~~~~C~~~~~~y~C~C~  540 (604)
                      |++||+|..|+...  |.   ..|.++|.|++    .+|.|.+||+|..|...       .|.+++.|++.     |.|.
T Consensus       300 C~~g~~G~dCs~~~--cp---adC~g~G~Ci~----G~C~C~~Gy~G~~C~~~-------~C~~~g~cv~g-----C~C~  358 (525)
T KOG1225|consen  300 CNPGYSGKDCSIRR--CP---ADCSGHGKCID----GECLCDEGYTGELCIQR-------ACSGGGQCVNG-----CKCK  358 (525)
T ss_pred             cCCCcccccccccc--CC---ccCCCCCcccC----CceEeCCCCcCCccccc-------ccCCCceeccC-----ceec
Confidence            99999999997544  54   47999999983    36999999999999743       38888999863     9999


Q ss_pred             CCCccCC
Q psy15407        541 GDFVGKF  547 (604)
Q Consensus       541 ~G~~G~~  547 (604)
                      .||.|.+
T Consensus       359 ~Gw~G~d  365 (525)
T KOG1225|consen  359 KGWRGPD  365 (525)
T ss_pred             cCccCCC
Confidence            9999988

>KOG1225|consensus

Probab=99.23  E-value=4.3e-11  Score=124.48  Aligned_cols=130  Identities=37%  Similarity=1.038  Sum_probs=102.3

Q ss_pred             EeeCCCCCcCCCCCcCCCcCCCCCCCCCcEEEeCCCCeEEecCCCCCCCCcccCCCcCCCCCCCCCCCCceeecCCCeEE
Q psy15407        420 NCECAPGYTGDRCEINIDDCLSHKCENNATCVDLIQAYECRCAPGFQGEFCQTKTPFCAGEYNPCRNGARCLDHFSHYTC  499 (604)
Q Consensus       420 ~C~C~~g~~g~~C~~~~~~C~~~~C~~~~~C~~~~~~~~C~C~~g~~g~~C~~~~~~C~~~~~~C~~~~~C~~~~~~~~C  499 (604)
                      .|.|+.+|+|..|.  ...| +..|.+++.|++.    +|+|++||+|..|..  ..|..   .|+.++.|++.    .|
T Consensus       235 ic~c~~~~~g~~c~--~~~C-~~~c~~~g~c~~G----~CIC~~Gf~G~dC~e--~~Cp~---~cs~~g~~~~g----~C  298 (525)
T KOG1225|consen  235 ICECPEGYFGPLCS--TIYC-PGGCTGRGQCVEG----RCICPPGFTGDDCDE--LVCPV---DCSGGGVCVDG----EC  298 (525)
T ss_pred             eeecCCceeCCccc--cccC-CCCCcccceEeCC----eEeCCCCCcCCCCCc--ccCCc---ccCCCceecCC----Ee
Confidence            79999999999997  2344 3456777888764    799999999999965  34643   48888888753    79


Q ss_pred             ecCCCCcCCcCcccCCCCCCCCCCCCCEEeeCCCCeEeeeCCCCccCCCCcCcccccCCCCCCCCCCCCCCCCc-eeCCC
Q psy15407        500 ECTPGFSGVNCTVNVDDCVNHMCQNGGTCVDGINDYTCKCEGDFVGKFCEIAPFVAMMYPQTSPCQHHDCKNGI-CFQPQ  578 (604)
Q Consensus       500 ~C~~g~~g~~c~~~~~~C~~~~C~~~~~C~~~~~~y~C~C~~G~~G~~C~~~~~~~~~~~~~~~C~~~~C~~g~-C~~~~  578 (604)
                      +|++||+|..|++..  |. .+|.++|.|++.    +|.|.+||+|..|+..                .|.++. |++  
T Consensus       299 iC~~g~~G~dCs~~~--cp-adC~g~G~Ci~G----~C~C~~Gy~G~~C~~~----------------~C~~~g~cv~--  353 (525)
T KOG1225|consen  299 ICNPGYSGKDCSIRR--CP-ADCSGHGKCIDG----ECLCDEGYTGELCIQR----------------ACSGGGQCVN--  353 (525)
T ss_pred             ecCCCcccccccccc--CC-ccCCCCCcccCC----ceEeCCCCcCCccccc----------------ccCCCceecc--
Confidence            999999999997543  55 479999999954    8999999999999852                255555 653  


Q ss_pred             CCCCeeeecCCCCcCCC
Q psy15407        579 GSNDYLCKCAPGYSGKE  595 (604)
Q Consensus       579 g~~~~~C~C~~G~~G~~  595 (604)
                         +  |.|..||.|.+
T Consensus       354 ---g--C~C~~Gw~G~d  365 (525)
T KOG1225|consen  354 ---G--CKCKKGWRGPD  365 (525)
T ss_pred             ---C--ceeccCccCCC
Confidence               2  89999999988

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=99.21  E-value=1.7e-11  Score=91.69  Aligned_cols=60  Identities=37%  Similarity=0.465  Sum_probs=38.8

Q ss_pred             cceeecCCCCceeeccCCCCCCCCCCCeEEecCCcceeeeccccCCCCcccEEEccCCcc
Q psy15407        217 STMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDI  276 (604)
Q Consensus       217 ~L~~L~Ls~N~i~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l  276 (604)
                      +|++|+|++|+|+.+++.+|.++++|++|+|++|+|+.+++.+|.++++|++|+|++|+|
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            456666666666666666666666666666666666666666666666666666666654

...

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=99.20  E-value=1.4e-11  Score=92.05  Aligned_cols=61  Identities=34%  Similarity=0.525  Sum_probs=59.1

Q ss_pred             CCCCeEEecCCcceeeeccccCCCCcccEEEccCCccccCCcccccCcccceeeeccCCCc
Q psy15407        240 SKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIGGNPL  300 (604)
Q Consensus       240 ~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~Npl  300 (604)
                      ++|++|+|++|+|+.|++.+|.++++|++|+|++|+|+.|++++|..+++|++|+|++|++
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            5799999999999999999999999999999999999999999999999999999999985

...

>PLN03210 Resistant to P

Probab=99.16  E-value=1.8e-10  Score=136.36  Aligned_cols=195  Identities=16%  Similarity=0.226  Sum_probs=116.4

Q ss_pred             CeEEcCCCCCCcCCCCC-CccCcEEecCCCcceeecCCCccCCCCCCcEEeCCCC-cceecCCCcCCCcccCCcCCCCCC
Q psy15407         97 TRVDCSQRGLKEIPKDI-PLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRN-QVTGIEDNAFEGENDQGCLGDNYC  174 (604)
Q Consensus        97 ~~l~cs~~~L~~iP~~l-~~~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~l~~~  174 (604)
                      +.|++.++.++.+|..+ +.++++|+|.+|+|..++..  +..+++|+.|+|+++ .+..++.  +..+++|+.|+|++|
T Consensus       592 r~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~l~~L~~~--~~~l~~Lk~L~Ls~~~~l~~ip~--ls~l~~Le~L~L~~c  667 (1153)
T PLN03210        592 RLLRWDKYPLRCMPSNFRPENLVKLQMQGSKLEKLWDG--VHSLTGLRNIDLRGSKNLKEIPD--LSMATNLETLKLSDC  667 (1153)
T ss_pred             EEEEecCCCCCCCCCcCCccCCcEEECcCccccccccc--cccCCCCCEEECCCCCCcCcCCc--cccCCcccEEEecCC
Confidence            56778888888888877 67888899999988888753  678888888888876 4666653  666778888888775


Q ss_pred             C--------CCccccccEEEccCCcccccccccc-ceee--------eeeccccCCccccceeecCCCCceeeccCCC--
Q psy15407        175 P--------PKCTCTVRVLFYDGRAGECYIAVEL-FSSR--------IRVSYYVGNYPVSTMYRDLSNNQIGFLSNFT--  235 (604)
Q Consensus       175 ~--------~~~~~~l~~l~~~~~~~~~~~~~~~-~~~~--------~~~~~~~~~~~~~L~~L~Ls~N~i~~l~~~~--  235 (604)
                      .        +..+..|..+.+........++... +.++        ..+..++ ..+.+|++|+|++|.|+.++...  
T Consensus       668 ~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~~L~~~p-~~~~nL~~L~L~~n~i~~lP~~~~l  746 (1153)
T PLN03210        668 SSLVELPSSIQYLNKLEDLDMSRCENLEILPTGINLKSLYRLNLSGCSRLKSFP-DISTNISWLDLDETAIEEFPSNLRL  746 (1153)
T ss_pred             CCccccchhhhccCCCCEEeCCCCCCcCccCCcCCCCCCCEEeCCCCCCccccc-cccCCcCeeecCCCccccccccccc
Confidence            3        1233445555555322111111110 0000        0111111 12236777777777776665421  


Q ss_pred             ---------------------------CCCCCCCCeEEecCCcceeeeccccCCCCcccEEEccCC-ccccCCcccccCc
Q psy15407        236 ---------------------------FSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGN-DISMIPEGAFADL  287 (604)
Q Consensus       236 ---------------------------f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N-~l~~i~~~~f~~l  287 (604)
                                                 +...++|+.|+|++|......|..|..+++|+.|+|+++ .|..+|...  .+
T Consensus       747 ~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~--~L  824 (1153)
T PLN03210        747 ENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI--NL  824 (1153)
T ss_pred             cccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC--Cc
Confidence                                       011235666666666433333555777777777777764 466666543  46


Q ss_pred             ccceeeeccCC
Q psy15407        288 HAITHLAIGGN  298 (604)
Q Consensus       288 ~~L~~L~L~~N  298 (604)
                      ++|+.|+|+++
T Consensus       825 ~sL~~L~Ls~c  835 (1153)
T PLN03210        825 ESLESLDLSGC  835 (1153)
T ss_pred             cccCEEECCCC
Confidence            66666666664

syringae 6; Provisional

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.12  E-value=4.4e-11  Score=126.03  Aligned_cols=81  Identities=36%  Similarity=0.452  Sum_probs=62.1

Q ss_pred             cceeecCCCCceeeccCCCCCCCCCCCeEEecCCcceeeeccccCCCCcccEEEccCCccccCCcccccCcccceeeecc
Q psy15407        217 STMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIG  296 (604)
Q Consensus       217 ~L~~L~Ls~N~i~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~  296 (604)
                      .|++|.+++|++..++. .+..+.+|..|.+.+|++..+ +..+..+++|+.|++++|+|+.++.  +..+.+|+.|+++
T Consensus       210 ~L~~l~~~~N~~~~~~~-~~~~~~~l~~l~l~~n~~~~~-~~~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s  285 (394)
T COG4886         210 ALEELDLSNNSIIELLS-SLSNLKNLSGLELSNNKLEDL-PESIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLS  285 (394)
T ss_pred             hhhhhhhcCCcceecch-hhhhcccccccccCCceeeec-cchhccccccceecccccccccccc--ccccCccCEEecc
Confidence            57788888886444443 466777888888888888776 4567777888888888888888887  7778888888888


Q ss_pred             CCCcc
Q psy15407        297 GNPLY  301 (604)
Q Consensus       297 ~Npl~  301 (604)
                      +|.+.
T Consensus       286 ~n~~~  290 (394)
T COG4886         286 GNSLS  290 (394)
T ss_pred             Ccccc
Confidence            88764

>KOG1259|consensus

Probab=99.10  E-value=9.6e-12  Score=117.42  Aligned_cols=128  Identities=26%  Similarity=0.317  Sum_probs=106.2

Q ss_pred             CeEEcCCCCCCcCCCCC--CccCcEEecCCCcceeecCCCccCCCCCCcEEeCCCCcceecCCCcCCCcccCCcCCCCCC
Q psy15407         97 TRVDCSQRGLKEIPKDI--PLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDNYC  174 (604)
Q Consensus        97 ~~l~cs~~~L~~iP~~l--~~~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~l~~~  174 (604)
                      ++||+|+|.|+.|-+.+  .+.++.|+|++|.|..+..   +..|++|+.||||+|.++.+..-.. .|           
T Consensus       287 telDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~n---La~L~~L~~LDLS~N~Ls~~~Gwh~-KL-----------  351 (490)
T KOG1259|consen  287 TELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQN---LAELPQLQLLDLSGNLLAECVGWHL-KL-----------  351 (490)
T ss_pred             hhccccccchhhhhhhhhhccceeEEeccccceeeehh---hhhcccceEeecccchhHhhhhhHh-hh-----------
Confidence            67999999999998764  6778999999999999964   8899999999999999988754111 11           


Q ss_pred             CCCccccccEEEccCCccccccccccceeeeeeccccCCccccceeecCCCCceeeccCCCCCCCCCCCeEEecCCccee
Q psy15407        175 PPKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQC  254 (604)
Q Consensus       175 ~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~i~~l~~~~f~~l~~L~~L~Ls~N~l~~  254 (604)
                                                               -+++.|.|+.|.|..+..  +..|-+|..|||++|+|..
T Consensus       352 -----------------------------------------GNIKtL~La~N~iE~LSG--L~KLYSLvnLDl~~N~Ie~  388 (490)
T KOG1259|consen  352 -----------------------------------------GNIKTLKLAQNKIETLSG--LRKLYSLVNLDLSSNQIEE  388 (490)
T ss_pred             -----------------------------------------cCEeeeehhhhhHhhhhh--hHhhhhheeccccccchhh
Confidence                                                     167788899999888764  6778889999999999988


Q ss_pred             eec-cccCCCCcccEEEccCCccccCCcc
Q psy15407        255 IDR-DALAGLKSLRIISLHGNDISMIPEG  282 (604)
Q Consensus       255 i~~-~~f~~l~~L~~L~Ls~N~l~~i~~~  282 (604)
                      +.. ..++.|+-|++|.|.+|.|+.++..
T Consensus       389 ldeV~~IG~LPCLE~l~L~~NPl~~~vdY  417 (490)
T KOG1259|consen  389 LDEVNHIGNLPCLETLRLTGNPLAGSVDY  417 (490)
T ss_pred             HHHhcccccccHHHHHhhcCCCccccchH
Confidence            753 5678899999999999999988763

>KOG3207|consensus

Probab=99.00  E-value=4.6e-11  Score=118.59  Aligned_cols=201  Identities=19%  Similarity=0.147  Sum_probs=110.8

Q ss_pred             eEEcCCCCCCcCCC--C--CCccCcEEecCCCcceeecCC-CccCCCCCCcEEeCCCCcceecCC-CcCCCcccCCcCCC
Q psy15407         98 RVDCSQRGLKEIPK--D--IPLYTTELILNDNEIGKIKSD-GLFGRLPNLIKLDLRRNQVTGIED-NAFEGENDQGCLGD  171 (604)
Q Consensus        98 ~l~cs~~~L~~iP~--~--l~~~~~~L~L~~N~i~~i~~~-~~f~~l~~L~~L~Ls~N~i~~i~~-~~f~~l~~L~~L~l  171 (604)
                      .|.+.+.....++.  .  ...+++.|+|+.|-|..+.+. .+...|++|+.|+|+.|++..... ..-..++.|+.|.|
T Consensus       125 ~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l  204 (505)
T KOG3207|consen  125 EISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVL  204 (505)
T ss_pred             heeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEe
Confidence            34555555444442  1  234568888888887654321 224578888888888888765322 22224566777777


Q ss_pred             CCCCCCccccccEEEccCCccccccccccceeeeeeccccCCccccceeecCCCCceeeccC-CCCCCCCCCCeEEecCC
Q psy15407        172 NYCPPKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSN-FTFSPLSKLSQLILSYN  250 (604)
Q Consensus       172 ~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~i~~l~~-~~f~~l~~L~~L~Ls~N  250 (604)
                      +.|.+..-.-...+..-..+..+++..|.   ...........+..|+.|||++|++...+. .....|+.|..|+++.+
T Consensus       205 ~~CGls~k~V~~~~~~fPsl~~L~L~~N~---~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~t  281 (505)
T KOG3207|consen  205 NSCGLSWKDVQWILLTFPSLEVLYLEANE---IILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSST  281 (505)
T ss_pred             ccCCCCHHHHHHHHHhCCcHHHhhhhccc---ccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhcccc
Confidence            77665422222222222222233332221   000111111223467777888877766653 24566777777888888


Q ss_pred             cceeeecccc------CCCCcccEEEccCCccccCCc-ccccCcccceeeeccCCCcc
Q psy15407        251 KLQCIDRDAL------AGLKSLRIISLHGNDISMIPE-GAFADLHAITHLAIGGNPLY  301 (604)
Q Consensus       251 ~l~~i~~~~f------~~l~~L~~L~Ls~N~l~~i~~-~~f~~l~~L~~L~L~~Npl~  301 (604)
                      .|.+|....-      ..+++|+.|+++.|+|..++. +.+..+++|+.|.+..|++.
T Consensus       282 gi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln  339 (505)
T KOG3207|consen  282 GIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN  339 (505)
T ss_pred             CcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccc
Confidence            7777643222      445778888888888765553 22334555666666666664

>PLN03210 Resistant to P

Probab=98.98  E-value=3.8e-09  Score=125.24  Aligned_cols=195  Identities=14%  Similarity=0.106  Sum_probs=110.1

Q ss_pred             CCeEEcCCCCCCcCCCCC--CccCcEEecCCCc-ceeecCCCccCCCCCCcEEeCCCCc-ceecCCCcCCCcccCCcCCC
Q psy15407         96 GTRVDCSQRGLKEIPKDI--PLYTTELILNDNE-IGKIKSDGLFGRLPNLIKLDLRRNQ-VTGIEDNAFEGENDQGCLGD  171 (604)
Q Consensus        96 ~~~l~cs~~~L~~iP~~l--~~~~~~L~L~~N~-i~~i~~~~~f~~l~~L~~L~Ls~N~-i~~i~~~~f~~l~~L~~L~l  171 (604)
                      -..|+++++.|..+|.++  ...++.|+|+++. ++.+|.   +..+++|++|+|++|. +..++ ..+..+.+|+.|++
T Consensus       613 L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~---ls~l~~Le~L~L~~c~~L~~lp-~si~~L~~L~~L~L  688 (1153)
T PLN03210        613 LVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD---LSMATNLETLKLSDCSSLVELP-SSIQYLNKLEDLDM  688 (1153)
T ss_pred             CcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCc---cccCCcccEEEecCCCCccccc-hhhhccCCCCEEeC
Confidence            467888888888888766  3566888888754 566653   6778888888887764 44443 45667777777777


Q ss_pred             CCCC------C-CccccccEEEccCCc------------cccccccccceee---------e-----------------e
Q psy15407        172 NYCP------P-KCTCTVRVLFYDGRA------------GECYIAVELFSSR---------I-----------------R  206 (604)
Q Consensus       172 ~~~~------~-~~~~~l~~l~~~~~~------------~~~~~~~~~~~~~---------~-----------------~  206 (604)
                      ++|.      . ..+.+|..+.+.+..            ..+.+..+.+...         .                 .
T Consensus       689 ~~c~~L~~Lp~~i~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~  768 (1153)
T PLN03210        689 SRCENLEILPTGINLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQP  768 (1153)
T ss_pred             CCCCCcCccCCcCCCCCCCEEeCCCCCCccccccccCCcCeeecCCCccccccccccccccccccccccchhhccccccc
Confidence            6642      1 122334444443221            1111111110000         0                 0


Q ss_pred             eccccCCccccceeecCCCCceeeccCCCCCCCCCCCeEEecCC-cceeeeccccCCCCcccEEEccCCc-cccCCcccc
Q psy15407        207 VSYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYN-KLQCIDRDALAGLKSLRIISLHGND-ISMIPEGAF  284 (604)
Q Consensus       207 ~~~~~~~~~~~L~~L~Ls~N~i~~l~~~~f~~l~~L~~L~Ls~N-~l~~i~~~~f~~l~~L~~L~Ls~N~-l~~i~~~~f  284 (604)
                      +..+....+.+|+.|+|++|....-.+..|.++++|+.|+|+++ .+..++...  .+++|+.|+|+++. +..+|.   
T Consensus       769 l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~--~L~sL~~L~Ls~c~~L~~~p~---  843 (1153)
T PLN03210        769 LTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI--NLESLESLDLSGCSRLRTFPD---  843 (1153)
T ss_pred             cchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC--CccccCEEECCCCCccccccc---
Confidence            00001112347888999988654434456889999999999886 567765432  45666666666542 333332   


Q ss_pred             cCcccceeeeccCCCc
Q psy15407        285 ADLHAITHLAIGGNPL  300 (604)
Q Consensus       285 ~~l~~L~~L~L~~Npl  300 (604)
                       ...+|+.|+|++|.+
T Consensus       844 -~~~nL~~L~Ls~n~i  858 (1153)
T PLN03210        844 -ISTNISDLNLSRTGI  858 (1153)
T ss_pred             -cccccCEeECCCCCC
Confidence             123455555555544

syringae 6; Provisional

>KOG3207|consensus

Probab=98.91  E-value=1.2e-10  Score=115.60  Aligned_cols=185  Identities=19%  Similarity=0.142  Sum_probs=130.3

Q ss_pred             ccCcEEecCCCcceeecCCCccCCCCCCcEEeCCCCcceecCC--CcCCCcccCCcCCCCCCCCCccccccEEEccCCcc
Q psy15407        115 LYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIED--NAFEGENDQGCLGDNYCPPKCTCTVRVLFYDGRAG  192 (604)
Q Consensus       115 ~~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i~~--~~f~~l~~L~~L~l~~~~~~~~~~l~~l~~~~~~~  192 (604)
                      +.++++.|.+-.+..++..+....+++++.||||.|-|..+.+  .....|++|+.|.|+.|.+....+-..........
T Consensus       121 kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK  200 (505)
T KOG3207|consen  121 KKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLK  200 (505)
T ss_pred             HhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhh
Confidence            4457888888888777654457889999999999999887654  34567899999999988655443322222222222


Q ss_pred             ccccccccceeeeeeccccCCccccceeecCCCCceeeccCCCCCCCCCCCeEEecCCcceeeec-cccCCCCcccEEEc
Q psy15407        193 ECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDR-DALAGLKSLRIISL  271 (604)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~i~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~-~~f~~l~~L~~L~L  271 (604)
                      .+.+..-.+. ...+......+| +|+.|+|+.|.+..+....+.-+..|++|+|++|.+...+. .....|+.|+.|++
T Consensus       201 ~L~l~~CGls-~k~V~~~~~~fP-sl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnl  278 (505)
T KOG3207|consen  201 QLVLNSCGLS-WKDVQWILLTFP-SLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNL  278 (505)
T ss_pred             eEEeccCCCC-HHHHHHHHHhCC-cHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhc
Confidence            2222222221 222222333445 89999999997666666667778899999999999988752 45677899999999


Q ss_pred             cCCccccCCccc------ccCcccceeeeccCCCcc
Q psy15407        272 HGNDISMIPEGA------FADLHAITHLAIGGNPLY  301 (604)
Q Consensus       272 s~N~l~~i~~~~------f~~l~~L~~L~L~~Npl~  301 (604)
                      +.+.|++|....      ...+++|+.|++..|++.
T Consensus       279 s~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~  314 (505)
T KOG3207|consen  279 SSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIR  314 (505)
T ss_pred             cccCcchhcCCCccchhhhcccccceeeecccCccc
Confidence            999999775432      256789999999999985

>KOG1859|consensus

Probab=98.89  E-value=2.4e-11  Score=127.24  Aligned_cols=128  Identities=25%  Similarity=0.297  Sum_probs=97.8

Q ss_pred             cEEecCCCcceeecCCCccCCCCCCcEEeCCCCcceecCCCcCCCcccCCcCCCCCCCCCccccccEEEccCCccccccc
Q psy15407        118 TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDNYCPPKCTCTVRVLFYDGRAGECYIA  197 (604)
Q Consensus       118 ~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~l~~~~~~~~~~l~~l~~~~~~~~~~~~  197 (604)
                      ...+++.|.+..+...  +.-|+.|+.|||++|+++.+.  ++..+                                  
T Consensus       167 ~~a~fsyN~L~~mD~S--Lqll~ale~LnLshNk~~~v~--~Lr~l----------------------------------  208 (1096)
T KOG1859|consen  167 ATASFSYNRLVLMDES--LQLLPALESLNLSHNKFTKVD--NLRRL----------------------------------  208 (1096)
T ss_pred             hhhhcchhhHHhHHHH--HHHHHHhhhhccchhhhhhhH--HHHhc----------------------------------
Confidence            5567777777777543  677788888888888877765  23322                                  


Q ss_pred             cccceeeeeeccccCCccccceeecCCCCceeeccCCCCCCCCCCCeEEecCCcceeeeccccCCCCcccEEEccCCccc
Q psy15407        198 VELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDIS  277 (604)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~i~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~  277 (604)
                                        .+|++|||++|.+..++.....+.. |+.|.|++|.++.+.  .+.+|++|+.|||++|-|.
T Consensus       209 ------------------~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~tL~--gie~LksL~~LDlsyNll~  267 (1096)
T KOG1859|consen  209 ------------------PKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALTTLR--GIENLKSLYGLDLSYNLLS  267 (1096)
T ss_pred             ------------------ccccccccccchhccccccchhhhh-heeeeecccHHHhhh--hHHhhhhhhccchhHhhhh
Confidence                              2788999999999998875555544 999999999999984  5788999999999999988


Q ss_pred             cCCc-ccccCcccceeeeccCCCccccc
Q psy15407        278 MIPE-GAFADLHAITHLAIGGNPLYCDC  304 (604)
Q Consensus       278 ~i~~-~~f~~l~~L~~L~L~~Npl~CdC  304 (604)
                      ...+ ..+..|..|+.|+|.|||+-|.-
T Consensus       268 ~hseL~pLwsLs~L~~L~LeGNPl~c~p  295 (1096)
T KOG1859|consen  268 EHSELEPLWSLSSLIVLWLEGNPLCCAP  295 (1096)
T ss_pred             cchhhhHHHHHHHHHHHhhcCCccccCH
Confidence            6544 22456778999999999998754

>PLN03150 hypothetical protein; Provisional

Probab=98.87  E-value=1.7e-09  Score=119.59  Aligned_cols=87  Identities=28%  Similarity=0.303  Sum_probs=61.8

Q ss_pred             cceeecCCCCceeeccCCCCCCCCCCCeEEecCCcceeeeccccCCCCcccEEEccCCccccCCcccccC-cccceeeec
Q psy15407        217 STMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFAD-LHAITHLAI  295 (604)
Q Consensus       217 ~L~~L~Ls~N~i~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~-l~~L~~L~L  295 (604)
                      +|+.|+|++|.|+...+..|..+++|+.|+|++|+|+...|..|..|++|+.|+|++|+|+...+..+.. +.++..+++
T Consensus       443 ~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~  522 (623)
T PLN03150        443 HLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNF  522 (623)
T ss_pred             CCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEEe
Confidence            6777788888877666666777888888888888887766777777888888888888877433333333 345667777


Q ss_pred             cCCCcccc
Q psy15407        296 GGNPLYCD  303 (604)
Q Consensus       296 ~~Npl~Cd  303 (604)
                      .+|+..|.
T Consensus       523 ~~N~~lc~  530 (623)
T PLN03150        523 TDNAGLCG  530 (623)
T ss_pred             cCCccccC
Confidence            78877764

>KOG0994|consensus

Probab=98.87  E-value=1.2e-08  Score=110.80  Aligned_cols=209  Identities=28%  Similarity=0.629  Sum_probs=108.4

Q ss_pred             eee-eCCCCCcCCCCcccCCCCCCCCCCCC--------CeeeeCC-CCceEeeCCCCCcCCCCCcCCCcCCCCCCCCCcE
Q psy15407        380 YQC-RCTPGYHGQHCEFMIDACYGNPCRNS--------GTCKLLE-EGRFNCECAPGYTGDRCEINIDDCLSHKCENNAT  449 (604)
Q Consensus       380 ~~C-~C~~g~~G~~c~~~~~~C~~~~C~~~--------~~C~~~~-~~~~~C~C~~g~~g~~C~~~~~~C~~~~C~~~~~  449 (604)
                      +.| .|-.||+|..=-..-..|.+-||+.+        .+|...+ .....|.|.+||.|.+|+.-.+.=..+|=. +|+
T Consensus       885 ~~CdrCl~GyyGdP~lg~g~~CrPCpCP~gp~Sg~~~A~sC~~d~~t~~ivC~C~~GY~G~RCe~CA~~~fGnP~~-GGt  963 (1758)
T KOG0994|consen  885 HSCDRCLDGYYGDPRLGSGIGCRPCPCPDGPASGRQHADSCYLDTRTQQIVCHCQEGYSGSRCEICADNHFGNPSE-GGT  963 (1758)
T ss_pred             cchhhhhccccCCcccCCCCCCCCCCCCCCCccchhccccccccccccceeeecccCccccchhhhcccccCCccc-CCc
Confidence            444 57777776532222234555555432        1343221 235689999999999997311110111211 222


Q ss_pred             E---------------------------EeCCCCeEE-ecCCCCCCCCcccCCCcCCCCCCCCCCCCceeecCCCeEEec
Q psy15407        450 C---------------------------VDLIQAYEC-RCAPGFQGEFCQTKTPFCAGEYNPCRNGARCLDHFSHYTCEC  501 (604)
Q Consensus       450 C---------------------------~~~~~~~~C-~C~~g~~g~~C~~~~~~C~~~~~~C~~~~~C~~~~~~~~C~C  501 (604)
                      |                           ...+.+..| .|..||.|+.-...-..|.-+.-.-.+.+.|.  .-+..|.|
T Consensus       964 Cq~CeC~~NiD~~d~~aCD~~TG~CLkCL~hTeG~hCe~Ck~Gf~GdA~~q~CqrC~Cn~LGTn~~~~CD--r~tGQCpC 1041 (1758)
T KOG0994|consen  964 CQKCECSNNIDLYDPGACDVATGACLKCLYHTEGDHCEHCKDGFYGDALRQNCQRCVCNFLGTNSTCHCD--RFTGQCPC 1041 (1758)
T ss_pred             cccccccCCcCccCCCccchhhchhhhhhhcccccchhhccccchhHHHHhhhhhheccccccCCccccc--cccCcCCC
Confidence            2                           111223345 58888887632111111110000000112332  23456888


Q ss_pred             CCCCcCCcCccc---------CCCCCCCCCC--CCCEEeeCCCCeEeeeCCCCccCCCCcCcccccCCCCCCCCCCCCCC
Q psy15407        502 TPGFSGVNCTVN---------VDDCVNHMCQ--NGGTCVDGINDYTCKCEGDFVGKFCEIAPFVAMMYPQTSPCQHHDCK  570 (604)
Q Consensus       502 ~~g~~g~~c~~~---------~~~C~~~~C~--~~~~C~~~~~~y~C~C~~G~~G~~C~~~~~~~~~~~~~~~C~~~~C~  570 (604)
                      .|...|..|..-         -.-|.+-.|.  .+-+|....|  +|.|.+||-|..|..+.. .++......|...+|.
T Consensus      1042 lpNv~G~~CDqCA~N~w~laSG~GCe~C~Cd~~~~pqCN~ftG--QCqCkpGfGGR~C~qCqe-l~WGdP~~~C~aCdCd 1118 (1758)
T KOG0994|consen 1042 LPNVQGVRCDQCAENHWNLASGEGCEPCNCDPIGGPQCNEFTG--QCQCKPGFGGRTCSQCQE-LYWGDPNEKCRACDCD 1118 (1758)
T ss_pred             CcccccccccccccchhccccCCCCCccCCCccCCcccccccc--ceeccCCCCCcchhHHHH-hhcCCCCCCceecCCC
Confidence            888888777420         0112221222  2336766666  899999999999987643 3344445577777775


Q ss_pred             C-Cc----eeCCCCCCCeeeecCCCCcCCCCCC
Q psy15407        571 N-GI----CFQPQGSNDYLCKCAPGYSGKESLL  598 (604)
Q Consensus       571 ~-g~----C~~~~g~~~~~C~C~~G~~G~~C~~  598 (604)
                      . |+    |....|    .|+|.+|..|.+|+.
T Consensus      1119 ~rG~~tpQCdr~tG----~C~C~~Gv~G~rCdq 1147 (1758)
T KOG0994|consen 1119 PRGIETPQCDRATG----RCVCRPGVGGPRCDQ 1147 (1758)
T ss_pred             CCCCCCCCccccCC----ceeecCCCCCcchhh
Confidence            3 21    665554    377777777777763

>TIGR00864 PCC polycystin cation channel protein

Probab=98.87  E-value=7.1e-10  Score=132.51  Aligned_cols=80  Identities=36%  Similarity=0.724  Sum_probs=71.8

Q ss_pred             EccCCccccCCcccccCcccceeeeccCCCcccccCCCccccccccccc---cCCccccCCCCcccccccccCCCCceee
Q psy15407        270 SLHGNDISMIPEGAFADLHAITHLAIGGNPLYCDCGLAWLSEWVKRDYV---EPGIARCTEPASMRDKLLLTAPASSFQC  346 (604)
Q Consensus       270 ~Ls~N~l~~i~~~~f~~l~~L~~L~L~~Npl~CdC~l~~l~~~~~~~~~---~~~~~~C~~P~~l~g~~l~~~~~~~~~C  346 (604)
                      ||++|+|+.|+++.|..|++|+.|+|++|||+|||+|+||.+|++....   ......|+.|..++|+.+.+++..+|.|
T Consensus         1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~CDC~L~WL~~WL~~~~v~v~~~~~i~CasP~~LrG~~L~~l~~~d~~C   80 (2740)
T TIGR00864         1 DISNNKISTIEEGICANLCNLSEIDLSGNPFECDCGLARLPRWAEEKGVKVRQPEAALCAGPGALAGQPLLGIPLLDSGC   80 (2740)
T ss_pred             CCCCCcCCccChHHhccCCCceEEEeeCCccccccccHHHHHHHHhcCccccCCcccCCCCChHHCCCCcccCCcccCCC
Confidence            6899999999999999999999999999999999999999999987643   2345789999999999999999988888


Q ss_pred             cCc
Q psy15407        347 KEK  349 (604)
Q Consensus       347 ~~~  349 (604)
                      ..+
T Consensus        81 ~~~   83 (2740)
T TIGR00864        81 DEE   83 (2740)
T ss_pred             CCc
Confidence            743

Note: this model has been restricted to the amino half because for technical reasons.

>KOG0532|consensus

Probab=98.87  E-value=3.9e-11  Score=122.61  Aligned_cols=179  Identities=22%  Similarity=0.185  Sum_probs=144.3

Q ss_pred             CeEEcCCCCCCcCCCCCC----ccCcEEecCCCcceeecCCCccCCCCCCcEEeCCCCcceecCCCcCCCcccCCcCCCC
Q psy15407         97 TRVDCSQRGLKEIPKDIP----LYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDN  172 (604)
Q Consensus        97 ~~l~cs~~~L~~iP~~l~----~~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~l~  172 (604)
                      .++.+++..|+.+|..-.    ..++.++|+.|++..||.+  +..+..|+.|.|..|.|..|+. +...|..|..|+|+
T Consensus        53 g~l~Ls~rrlk~fpr~a~~~~ltdt~~aDlsrNR~~elp~~--~~~f~~Le~liLy~n~~r~ip~-~i~~L~~lt~l~ls  129 (722)
T KOG0532|consen   53 GRLLLSGRRLKEFPRGAASYDLTDTVFADLSRNRFSELPEE--ACAFVSLESLILYHNCIRTIPE-AICNLEALTFLDLS  129 (722)
T ss_pred             cccccccchhhcCCCccccccccchhhhhccccccccCchH--HHHHHHHHHHHHHhccceecch-hhhhhhHHHHhhhc
Confidence            468899999999987542    3448899999999999886  8889999999999999999875 67788888888888


Q ss_pred             CCCCCccccccEEEccCCccccccccccceeeeeeccccCCccccceeecCCCCceeeccCCCCCCCCCCCeEEecCCcc
Q psy15407        173 YCPPKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKL  252 (604)
Q Consensus       173 ~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~i~~l~~~~f~~l~~L~~L~Ls~N~l  252 (604)
                      .|.+..++.                              +....-|+.|-+++|+++.++.. ++.+..|..|+.+.|.|
T Consensus       130 ~NqlS~lp~------------------------------~lC~lpLkvli~sNNkl~~lp~~-ig~~~tl~~ld~s~nei  178 (722)
T KOG0532|consen  130 SNQLSHLPD------------------------------GLCDLPLKVLIVSNNKLTSLPEE-IGLLPTLAHLDVSKNEI  178 (722)
T ss_pred             cchhhcCCh------------------------------hhhcCcceeEEEecCccccCCcc-cccchhHHHhhhhhhhh
Confidence            765432111                              00012578888999999999884 55899999999999999


Q ss_pred             eeeeccccCCCCcccEEEccCCccccCCcccccCcccceeeeccCCCcc----cccCCCccccc
Q psy15407        253 QCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIGGNPLY----CDCGLAWLSEW  312 (604)
Q Consensus       253 ~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~Npl~----CdC~l~~l~~~  312 (604)
                      ..+++ .+.+|.+|+.|++..|++..+|++.. .| .|..||++.|.+.    |-++|+.|...
T Consensus       179 ~slps-ql~~l~slr~l~vrRn~l~~lp~El~-~L-pLi~lDfScNkis~iPv~fr~m~~Lq~l  239 (722)
T KOG0532|consen  179 QSLPS-QLGYLTSLRDLNVRRNHLEDLPEELC-SL-PLIRLDFSCNKISYLPVDFRKMRHLQVL  239 (722)
T ss_pred             hhchH-HhhhHHHHHHHHHhhhhhhhCCHHHh-CC-ceeeeecccCceeecchhhhhhhhheee
Confidence            99954 67899999999999999999999754 66 4889999999885    77777666543

>KOG4260|consensus

Probab=98.87  E-value=2.9e-09  Score=98.30  Aligned_cols=79  Identities=25%  Similarity=0.679  Sum_probs=61.2

Q ss_pred             ecCCCCCC--CCcccCCCcCCCCCCCCCCCCceeecCCCeEEecCCCCcCCcCcccCCCCCC--CCC-CCCCEEeeCCCC
Q psy15407        460 RCAPGFQG--EFCQTKTPFCAGEYNPCRNGARCLDHFSHYTCECTPGFSGVNCTVNVDDCVN--HMC-QNGGTCVDGIND  534 (604)
Q Consensus       460 ~C~~g~~g--~~C~~~~~~C~~~~~~C~~~~~C~~~~~~~~C~C~~g~~g~~c~~~~~~C~~--~~C-~~~~~C~~~~~~  534 (604)
                      .|..||.-  ..| .++++|...+.+|..+..|+|+.|+|.|.+.+||.+.     +|+|.-  ..| ..+..|.++.+.
T Consensus       221 kCkkGW~lde~gC-vDvnEC~~ep~~c~~~qfCvNteGSf~C~dk~Gy~~g-----~d~C~~~~d~~~~kn~~c~ni~~~  294 (350)
T KOG4260|consen  221 KCKKGWKLDEEGC-VDVNECQNEPAPCKAHQFCVNTEGSFKCEDKEGYKKG-----VDECQFCADVCASKNRPCMNIDGQ  294 (350)
T ss_pred             hhcccceeccccc-ccHHHHhcCCCCCChhheeecCCCceEecccccccCC-----hHHhhhhhhhcccCCCCcccCCcc
Confidence            58888873  345 5889999888899988999999999999999999862     344432  222 235678889999


Q ss_pred             eEeeeCCCCc
Q psy15407        535 YTCKCEGDFV  544 (604)
Q Consensus       535 y~C~C~~G~~  544 (604)
                      |+|+|..|+.
T Consensus       295 ~r~v~f~~~~  304 (350)
T KOG4260|consen  295 YRCVCFSGLI  304 (350)
T ss_pred             EEEEecccce
Confidence            9999999885

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.86  E-value=2e-10  Score=117.36  Aligned_cols=85  Identities=28%  Similarity=0.230  Sum_probs=44.9

Q ss_pred             cceeecCCCCceeeccC----CCCCCCCCCCeEEecCCcceeeecccc-----CCCCcccEEEccCCccccCCc----cc
Q psy15407        217 STMYRDLSNNQIGFLSN----FTFSPLSKLSQLILSYNKLQCIDRDAL-----AGLKSLRIISLHGNDISMIPE----GA  283 (604)
Q Consensus       217 ~L~~L~Ls~N~i~~l~~----~~f~~l~~L~~L~Ls~N~l~~i~~~~f-----~~l~~L~~L~Ls~N~l~~i~~----~~  283 (604)
                      +|+.|+|++|.|+....    ..+..+++|++|+|++|.++......+     ...+.|+.|+|++|.|+....    ..
T Consensus       194 ~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~  273 (319)
T cd00116         194 NLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEV  273 (319)
T ss_pred             CCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHH
Confidence            56666666666653321    234455666677777666654221111     123566666776666641110    12


Q ss_pred             ccCcccceeeeccCCCcc
Q psy15407        284 FADLHAITHLAIGGNPLY  301 (604)
Q Consensus       284 f~~l~~L~~L~L~~Npl~  301 (604)
                      +..+++|+.|++++|.+.
T Consensus       274 ~~~~~~L~~l~l~~N~l~  291 (319)
T cd00116         274 LAEKESLLELDLRGNKFG  291 (319)
T ss_pred             HhcCCCccEEECCCCCCc
Confidence            334456666666666654

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.84  E-value=1.2e-10  Score=118.92  Aligned_cols=81  Identities=20%  Similarity=0.069  Sum_probs=52.9

Q ss_pred             CeEEcCCCCCC-----cCCCCCC--ccCcEEecCCCcceeecCC-----CccCCCCCCcEEeCCCCcceecCCCcCCCcc
Q psy15407         97 TRVDCSQRGLK-----EIPKDIP--LYTTELILNDNEIGKIKSD-----GLFGRLPNLIKLDLRRNQVTGIEDNAFEGEN  164 (604)
Q Consensus        97 ~~l~cs~~~L~-----~iP~~l~--~~~~~L~L~~N~i~~i~~~-----~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~l~  164 (604)
                      +.++++++.++     .|+..+.  ..+++|+++++.+..++..     ..|..+++|++|+|++|.+....+..|..+.
T Consensus        26 ~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~  105 (319)
T cd00116          26 QVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLL  105 (319)
T ss_pred             cEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHh
Confidence            57788888774     3444443  3368888888877632110     1267788889999988888765555555554


Q ss_pred             c---CCcCCCCCCCCC
Q psy15407        165 D---QGCLGDNYCPPK  177 (604)
Q Consensus       165 ~---L~~L~l~~~~~~  177 (604)
                      +   |+.|+++.|.+.
T Consensus       106 ~~~~L~~L~ls~~~~~  121 (319)
T cd00116         106 RSSSLQELKLNNNGLG  121 (319)
T ss_pred             ccCcccEEEeeCCccc
Confidence            4   888888776543

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.81  E-value=2.4e-09  Score=112.85  Aligned_cols=176  Identities=26%  Similarity=0.210  Sum_probs=129.6

Q ss_pred             CCeEEcCCCCCCcCCCCCCc---cCcEEecCCCcceeecCCCccCCCCCCcEEeCCCCcceecCCCcCCCcccCCcCCCC
Q psy15407         96 GTRVDCSQRGLKEIPKDIPL---YTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDN  172 (604)
Q Consensus        96 ~~~l~cs~~~L~~iP~~l~~---~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~l~  172 (604)
                      .+.+++.++.+++||..+..   .+++|++++|.|..++..  +..+++|+.|+|++|+|+.+++... .+.+|+.|+++
T Consensus       118 l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~--~~~l~~L~~L~l~~N~l~~l~~~~~-~~~~L~~L~ls  194 (394)
T COG4886         118 LTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSP--LRNLPNLKNLDLSFNDLSDLPKLLS-NLSNLNNLDLS  194 (394)
T ss_pred             eeEEecCCcccccCccccccchhhcccccccccchhhhhhh--hhccccccccccCCchhhhhhhhhh-hhhhhhheecc
Confidence            36899999999999986632   799999999999999643  7899999999999999999987532 67888999999


Q ss_pred             CCCCCccccccEEEccCCccccccccc-cceeeeeeccccCCccccceeecCCCCceeeccCCCCCCCCCCCeEEecCCc
Q psy15407        173 YCPPKCTCTVRVLFYDGRAGECYIAVE-LFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNK  251 (604)
Q Consensus       173 ~~~~~~~~~l~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~L~~L~Ls~N~i~~l~~~~f~~l~~L~~L~Ls~N~  251 (604)
                      .|.+..++...  .......++.+..+ .......+..     ...+..|.+++|++..++ ..+..++.|++|++++|.
T Consensus       195 ~N~i~~l~~~~--~~~~~L~~l~~~~N~~~~~~~~~~~-----~~~l~~l~l~~n~~~~~~-~~~~~l~~l~~L~~s~n~  266 (394)
T COG4886         195 GNKISDLPPEI--ELLSALEELDLSNNSIIELLSSLSN-----LKNLSGLELSNNKLEDLP-ESIGNLSNLETLDLSNNQ  266 (394)
T ss_pred             CCccccCchhh--hhhhhhhhhhhcCCcceecchhhhh-----cccccccccCCceeeecc-chhccccccceecccccc
Confidence            88765544321  01111222222222 1111111111     126677779999988863 367888999999999999


Q ss_pred             ceeeeccccCCCCcccEEEccCCccccCCcccc
Q psy15407        252 LQCIDRDALAGLKSLRIISLHGNDISMIPEGAF  284 (604)
Q Consensus       252 l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f  284 (604)
                      |+.++.  +..+.+|+.|++++|.+..+++...
T Consensus       267 i~~i~~--~~~~~~l~~L~~s~n~~~~~~~~~~  297 (394)
T COG4886         267 ISSISS--LGSLTNLRELDLSGNSLSNALPLIA  297 (394)
T ss_pred             cccccc--ccccCccCEEeccCccccccchhhh
Confidence            999976  8899999999999999998876543

>KOG1226|consensus

Probab=98.81  E-value=5.1e-08  Score=103.41  Aligned_cols=121  Identities=34%  Similarity=0.892  Sum_probs=91.6

Q ss_pred             EeeCCCCCcCCCCCcCC---------CcCCC----CCCCCCcEEEeCCCCeEEecCCCCC----CCCcccCCCcCCCCC-
Q psy15407        420 NCECAPGYTGDRCEINI---------DDCLS----HKCENNATCVDLIQAYECRCAPGFQ----GEFCQTKTPFCAGEY-  481 (604)
Q Consensus       420 ~C~C~~g~~g~~C~~~~---------~~C~~----~~C~~~~~C~~~~~~~~C~C~~g~~----g~~C~~~~~~C~~~~-  481 (604)
                      .|.|.+||.|..||...         +.|..    .+|++.|.|+=.    .|.|.+...    |..|+.+.-.|.... 
T Consensus       479 ~C~C~~G~~G~~CEC~~~~~ss~~~~~~Cr~~~~~~vCSgrG~C~CG----qC~C~~~~~~~i~G~fCECDnfsC~r~~g  554 (783)
T KOG1226|consen  479 QCRCDEGWLGKKCECSTDELSSSEEEDKCRENSDSPVCSGRGDCVCG----QCVCHKPDNGKIYGKFCECDNFSCERHKG  554 (783)
T ss_pred             ceecCCCCCCCcccCCccccCcHhHHhhccCCCCCCCcCCCCcEeCC----ceEecCCCCCceeeeeeeccCcccccccC
Confidence            47999999999998432         23431    379999988642    588988776    899987776676432 


Q ss_pred             CCCCCCCceeecCCCeEEecCCCCcCCcCc--ccCCCCCCC---CCCCCCEEeeCCCCeEeeeCCC-CccCCCCcCc
Q psy15407        482 NPCRNGARCLDHFSHYTCECTPGFSGVNCT--VNVDDCVNH---MCQNGGTCVDGINDYTCKCEGD-FVGKFCEIAP  552 (604)
Q Consensus       482 ~~C~~~~~C~~~~~~~~C~C~~g~~g~~c~--~~~~~C~~~---~C~~~~~C~~~~~~y~C~C~~G-~~G~~C~~~~  552 (604)
                      ..|..+|.|.-    .+|+|.+||+|..|.  .+.+.|.+.   -|+..|+|.-+    +|+|... |.|..||.++
T Consensus       555 ~lC~g~G~C~C----G~CvC~~GwtG~~C~C~~std~C~~~~G~iCSGrG~C~Cg----~C~C~~~~~sG~~CE~cp  623 (783)
T KOG1226|consen  555 VLCGGHGRCEC----GRCVCNPGWTGSACNCPLSTDTCESSDGQICSGRGTCECG----RCKCTDPPYSGEFCEKCP  623 (783)
T ss_pred             cccCCCCeEeC----CcEEcCCCCccCCCCCCCCCccccCCCCceeCCCceeeCC----ceEcCCCCcCcchhhcCC
Confidence            34888888854    369999999999886  456777643   48899999876    7999876 9999999864

>KOG4260|consensus

Probab=98.79  E-value=7.1e-09  Score=95.79  Aligned_cols=167  Identities=25%  Similarity=0.594  Sum_probs=100.1

Q ss_pred             eeeCCCCCcCCCCcccCCCCCCCCCCCCCeeeeC--CCCceEeeCCCCCcCCCCCcCCCcCCCCCCCCCcEEEeCCCCeE
Q psy15407        381 QCRCTPGYHGQHCEFMIDACYGNPCRNSGTCKLL--EEGRFNCECAPGYTGDRCEINIDDCLSHKCENNATCVDLIQAYE  458 (604)
Q Consensus       381 ~C~C~~g~~G~~c~~~~~~C~~~~C~~~~~C~~~--~~~~~~C~C~~g~~g~~C~~~~~~C~~~~C~~~~~C~~~~~~~~  458 (604)
                      .--|+.|-.|.+|.. ...-...||..+|.|.-.  ..|+..|.|.+||.|+.|.    +|.                  
T Consensus       129 kvCCp~gtyGpdCl~-Cpggser~C~GnG~C~GdGsR~GsGkCkC~~GY~Gp~C~----~Cg------------------  185 (350)
T KOG4260|consen  129 KVCCPDGTYGPDCLQ-CPGGSERPCFGNGSCHGDGSREGSGKCKCETGYTGPLCR----YCG------------------  185 (350)
T ss_pred             eeccCCCCcCCcccc-CCCCCcCCcCCCCcccCCCCCCCCCcccccCCCCCcccc----ccc------------------
Confidence            445888888988873 222244678888888642  2456788888888888875    221                  


Q ss_pred             EecCCCCCCCCcccCCCcCCCCCCCCCCCCceeecCCCeEE-ecCCCCcCC--cCcccCCCCC--CCCCCCCCEEeeCCC
Q psy15407        459 CRCAPGFQGEFCQTKTPFCAGEYNPCRNGARCLDHFSHYTC-ECTPGFSGV--NCTVNVDDCV--NHMCQNGGTCVDGIN  533 (604)
Q Consensus       459 C~C~~g~~g~~C~~~~~~C~~~~~~C~~~~~C~~~~~~~~C-~C~~g~~g~--~c~~~~~~C~--~~~C~~~~~C~~~~~  533 (604)
                          .+|.-..-...--.|..-...|.  +.|... ++-.| .|..||.-.  .| .|+|+|.  +.||..+-.|+++.|
T Consensus       186 ----~eyfes~Rne~~lvCt~Ch~~C~--~~Csg~-~~k~C~kCkkGW~lde~gC-vDvnEC~~ep~~c~~~qfCvNteG  257 (350)
T KOG4260|consen  186 ----IEYFESSRNEQHLVCTACHEGCL--GVCSGE-SSKGCSKCKKGWKLDEEGC-VDVNECQNEPAPCKAHQFCVNTEG  257 (350)
T ss_pred             ----hHHHHhhcccccchhhhhhhhhh--cccCCC-CCCChhhhcccceeccccc-ccHHHHhcCCCCCChhheeecCCC
Confidence                11110000000000110001121  123211 12235 588999743  34 5899996  467999999999999


Q ss_pred             CeEeeeCCCCccC--CCCcCcccccCCCCCCCCCCCCCCCCceeCCCCCCCeeeecCCCCc
Q psy15407        534 DYTCKCEGDFVGK--FCEIAPFVAMMYPQTSPCQHHDCKNGICFQPQGSNDYLCKCAPGYS  592 (604)
Q Consensus       534 ~y~C~C~~G~~G~--~C~~~~~~~~~~~~~~~C~~~~C~~g~C~~~~g~~~~~C~C~~G~~  592 (604)
                      +|.|.+++||.+.  .|+.+         .+.|..   .++.|.++.  ++|+|+|..|+.
T Consensus       258 Sf~C~dk~Gy~~g~d~C~~~---------~d~~~~---kn~~c~ni~--~~~r~v~f~~~~  304 (350)
T KOG4260|consen  258 SFKCEDKEGYKKGVDECQFC---------ADVCAS---KNRPCMNID--GQYRCVCFSGLI  304 (350)
T ss_pred             ceEecccccccCChHHhhhh---------hhhccc---CCCCcccCC--ccEEEEecccce
Confidence            9999999999853  12211         122322   245699999  789999999874

>KOG0531|consensus

Probab=98.74  E-value=1.1e-09  Score=115.76  Aligned_cols=145  Identities=29%  Similarity=0.222  Sum_probs=80.2

Q ss_pred             EEcCCCCCCcCCCCC--CccCcEEecCCCcceeecCCCccCCCCCCcEEeCCCCcceecCCCcCCCcccCCcCCCCCCCC
Q psy15407         99 VDCSQRGLKEIPKDI--PLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDNYCPP  176 (604)
Q Consensus        99 l~cs~~~L~~iP~~l--~~~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~l~~~~~  176 (604)
                      +.++.+.++.+-..+  ...++.|+|.+|+|..|...  +..+++|++|+|++|+|+.|..  +..+..|+.|++++|++
T Consensus        77 l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~--l~~~~~L~~L~ls~N~I~~i~~--l~~l~~L~~L~l~~N~i  152 (414)
T KOG0531|consen   77 LNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENL--LSSLVNLQVLDLSFNKITKLEG--LSTLTLLKELNLSGNLI  152 (414)
T ss_pred             hccchhhhhhhhcccccccceeeeeccccchhhcccc--hhhhhcchheeccccccccccc--hhhccchhhheeccCcc
Confidence            345666666532222  45567777777777777542  5667777777777777777754  44455566777776665


Q ss_pred             CccccccEEEccCCccccccccccceeeeeeccccCCccccceeecCCCCceeeccC-CCCCCCCCCCeEEecCCcceee
Q psy15407        177 KCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSN-FTFSPLSKLSQLILSYNKLQCI  255 (604)
Q Consensus       177 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~i~~l~~-~~f~~l~~L~~L~Ls~N~l~~i  255 (604)
                      ..+..+..                              ...|+.++|++|+|+.+.. . ...+.+|+.|+|..|.|..+
T Consensus       153 ~~~~~~~~------------------------------l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i  201 (414)
T KOG0531|consen  153 SDISGLES------------------------------LKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREI  201 (414)
T ss_pred             hhccCCcc------------------------------chhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcc
Confidence            43333222                              1155555666666655554 2 34455555555555555554


Q ss_pred             eccccCCCCcccEEEccCCccccCC
Q psy15407        256 DRDALAGLKSLRIISLHGNDISMIP  280 (604)
Q Consensus       256 ~~~~f~~l~~L~~L~Ls~N~l~~i~  280 (604)
                      .  .+..+..+..+++..|.|+.+.
T Consensus       202 ~--~~~~~~~l~~~~l~~n~i~~~~  224 (414)
T KOG0531|consen  202 E--GLDLLKKLVLLSLLDNKISKLE  224 (414)
T ss_pred             c--chHHHHHHHHhhcccccceecc
Confidence            2  2222333344444444444443

>KOG0531|consensus

Probab=98.72  E-value=2.7e-09  Score=112.76  Aligned_cols=80  Identities=20%  Similarity=0.186  Sum_probs=67.2

Q ss_pred             CeEEcCCCCCCcCCCCC--CccCcEEecCCCcceeecCCCccCCCCCCcEEeCCCCcceecCCCcCCCcccCCcCCCCCC
Q psy15407         97 TRVDCSQRGLKEIPKDI--PLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDNYC  174 (604)
Q Consensus        97 ~~l~cs~~~L~~iP~~l--~~~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~l~~~  174 (604)
                      ..|++.+|+|..|...+  ...+++|+|++|.|+.|..   +..|+.|+.|+|++|.|+.+..  |..+.+|+.|++++|
T Consensus        98 ~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~---l~~l~~L~~L~l~~N~i~~~~~--~~~l~~L~~l~l~~n  172 (414)
T KOG0531|consen   98 EALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEG---LSTLTLLKELNLSGNLISDISG--LESLKSLKLLDLSYN  172 (414)
T ss_pred             eeeeccccchhhcccchhhhhcchheeccccccccccc---hhhccchhhheeccCcchhccC--CccchhhhcccCCcc
Confidence            67999999999987733  5678999999999999965   7889999999999999999975  556899999999998


Q ss_pred             CCCcccc
Q psy15407        175 PPKCTCT  181 (604)
Q Consensus       175 ~~~~~~~  181 (604)
                      ....+..
T Consensus       173 ~i~~ie~  179 (414)
T KOG0531|consen  173 RIVDIEN  179 (414)
T ss_pred             hhhhhhh
Confidence            6554443

>KOG0994|consensus

Probab=98.71  E-value=1.3e-07  Score=102.95  Aligned_cols=214  Identities=26%  Similarity=0.610  Sum_probs=119.8

Q ss_pred             eeeeCCCCCcCCCCccc------CCCCCCCCCCCC--------Cee---eeCCCCceEe-eCCCCCcCCCCCcCCCcCCC
Q psy15407        380 YQCRCTPGYHGQHCEFM------IDACYGNPCRNS--------GTC---KLLEEGRFNC-ECAPGYTGDRCEINIDDCLS  441 (604)
Q Consensus       380 ~~C~C~~g~~G~~c~~~------~~~C~~~~C~~~--------~~C---~~~~~~~~~C-~C~~g~~g~~C~~~~~~C~~  441 (604)
                      ..|.|.+|-.|..|..-      ..+|.+-.|..+        |.|   ... ..++.| .|..||.|+.---....|.+
T Consensus       830 GQC~C~~g~ygrqCnqCqpG~WgFPeCr~CqCNgHA~~Cd~~tGaCi~CqD~-T~G~~CdrCl~GyyGdP~lg~g~~CrP  908 (1758)
T KOG0994|consen  830 GQCQCRPGTYGRQCNQCQPGYWGFPECRPCQCNGHADTCDPITGACIDCQDS-TTGHSCDRCLDGYYGDPRLGSGIGCRP  908 (1758)
T ss_pred             cceeeccccchhhccccCCCccCCCcCccccccCcccccCcccccccccccc-ccccchhhhhccccCCcccCCCCCCCC
Confidence            47888777777766421      123332222221        223   222 345567 79999988643323345555


Q ss_pred             CCCCCCc--------EEE--eCCCCeEEecCCCCCCCCcccCCC---------------cCCC-----CCCCCCCC-C--
Q psy15407        442 HKCENNA--------TCV--DLIQAYECRCAPGFQGEFCQTKTP---------------FCAG-----EYNPCRNG-A--  488 (604)
Q Consensus       442 ~~C~~~~--------~C~--~~~~~~~C~C~~g~~g~~C~~~~~---------------~C~~-----~~~~C~~~-~--  488 (604)
                      -||..+.        .|.  +......|.|.+||.|..|+...+               +|..     ++..|... |  
T Consensus       909 CpCP~gp~Sg~~~A~sC~~d~~t~~ivC~C~~GY~G~RCe~CA~~~fGnP~~GGtCq~CeC~~NiD~~d~~aCD~~TG~C  988 (1758)
T KOG0994|consen  909 CPCPDGPASGRQHADSCYLDTRTQQIVCHCQEGYSGSRCEICADNHFGNPSEGGTCQKCECSNNIDLYDPGACDVATGAC  988 (1758)
T ss_pred             CCCCCCCccchhccccccccccccceeeecccCccccchhhhcccccCCcccCCccccccccCCcCccCCCccchhhchh
Confidence            5665432        343  223456799999999998864221               0110     01112211 1  


Q ss_pred             -ceeecCCCeEEe-cCCCCcCCcCcccCCCCCCCCC--CCCCEEeeCCCCeEeeeCCCCccCCCCcCcccccCCCCCCCC
Q psy15407        489 -RCLDHFSHYTCE-CTPGFSGVNCTVNVDDCVNHMC--QNGGTCVDGINDYTCKCEGDFVGKFCEIAPFVAMMYPQTSPC  564 (604)
Q Consensus       489 -~C~~~~~~~~C~-C~~g~~g~~c~~~~~~C~~~~C--~~~~~C~~~~~~y~C~C~~G~~G~~C~~~~~~~~~~~~~~~C  564 (604)
                       +|.....+.+|. |.+||.|.-=..+-..|.-+.=  .+.+.|....|  +|-|.+...|..|..+...-+..-....|
T Consensus       989 LkCL~hTeG~hCe~Ck~Gf~GdA~~q~CqrC~Cn~LGTn~~~~CDr~tG--QCpClpNv~G~~CDqCA~N~w~laSG~GC 1066 (1758)
T KOG0994|consen  989 LKCLYHTEGDHCEHCKDGFYGDALRQNCQRCVCNFLGTNSTCHCDRFTG--QCPCLPNVQGVRCDQCAENHWNLASGEGC 1066 (1758)
T ss_pred             hhhhhcccccchhhccccchhHHHHhhhhhheccccccCCccccccccC--cCCCCcccccccccccccchhccccCCCC
Confidence             233333445674 8899988532211112211100  02245666666  89999999999998765544444455667


Q ss_pred             CCCCCCC-Cc--eeCCCCCCCeeeecCCCCcCCCCCCCc
Q psy15407        565 QHHDCKN-GI--CFQPQGSNDYLCKCAPGYSGKESLLQQ  600 (604)
Q Consensus       565 ~~~~C~~-g~--C~~~~g~~~~~C~C~~G~~G~~C~~~~  600 (604)
                      ....|.. |+  |..-+|+    |+|.+||.|+.|+..+
T Consensus      1067 e~C~Cd~~~~pqCN~ftGQ----CqCkpGfGGR~C~qCq 1101 (1758)
T KOG0994|consen 1067 EPCNCDPIGGPQCNEFTGQ----CQCKPGFGGRTCSQCQ 1101 (1758)
T ss_pred             CccCCCccCCccccccccc----eeccCCCCCcchhHHH
Confidence            7666653 22  8777765    9999999999997543

>PLN03150 hypothetical protein; Provisional

Probab=98.67  E-value=1.8e-08  Score=111.41  Aligned_cols=126  Identities=20%  Similarity=0.166  Sum_probs=97.7

Q ss_pred             eCCCeEEcCCCCCCcCCCCCCccCcEEecCCCcceeecCCCccCCCCCCcEEeCCCCcceecCCCcCCCcccCCcCCCCC
Q psy15407         94 CDGTRVDCSQRGLKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDNY  173 (604)
Q Consensus        94 C~~~~l~cs~~~L~~iP~~l~~~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~l~~  173 (604)
                      +.+..|.|+......     ...++.|+|++|.|+...+.. |..|++|+.|+|++|+|+...+..|..+.         
T Consensus       402 ~~w~Gv~C~~~~~~~-----~~~v~~L~L~~n~L~g~ip~~-i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~---------  466 (623)
T PLN03150        402 HPWSGADCQFDSTKG-----KWFIDGLGLDNQGLRGFIPND-ISKLRHLQSINLSGNSIRGNIPPSLGSIT---------  466 (623)
T ss_pred             cccccceeeccCCCC-----ceEEEEEECCCCCccccCCHH-HhCCCCCCEEECCCCcccCcCChHHhCCC---------
Confidence            357778886432110     124688999999997544433 89999999999999999876666676654         


Q ss_pred             CCCCccccccEEEccCCccccccccccceeeeeeccccCCccccceeecCCCCceeeccCCCCCCCCCCCeEEecCCcce
Q psy15407        174 CPPKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQ  253 (604)
Q Consensus       174 ~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~i~~l~~~~f~~l~~L~~L~Ls~N~l~  253 (604)
                                                                 +|+.|+|++|+|+...+..|..|++|+.|+|++|+|+
T Consensus       467 -------------------------------------------~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~  503 (623)
T PLN03150        467 -------------------------------------------SLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLS  503 (623)
T ss_pred             -------------------------------------------CCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCccc
Confidence                                                       7788899999999877888999999999999999999


Q ss_pred             eeeccccCCC-CcccEEEccCCccc
Q psy15407        254 CIDRDALAGL-KSLRIISLHGNDIS  277 (604)
Q Consensus       254 ~i~~~~f~~l-~~L~~L~Ls~N~l~  277 (604)
                      ...|..+..+ .++..+++.+|...
T Consensus       504 g~iP~~l~~~~~~~~~l~~~~N~~l  528 (623)
T PLN03150        504 GRVPAALGGRLLHRASFNFTDNAGL  528 (623)
T ss_pred             ccCChHHhhccccCceEEecCCccc
Confidence            7777777653 56788999998743

>KOG1644|consensus

Probab=98.67  E-value=2.9e-08  Score=89.28  Aligned_cols=81  Identities=25%  Similarity=0.241  Sum_probs=48.0

Q ss_pred             cceeecCCCCceeeccCCCCCCCCCCCeEEecCCcceeeec-cccCCCCcccEEEccCCccccCCc---ccccCccccee
Q psy15407        217 STMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDR-DALAGLKSLRIISLHGNDISMIPE---GAFADLHAITH  292 (604)
Q Consensus       217 ~L~~L~Ls~N~i~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~-~~f~~l~~L~~L~Ls~N~l~~i~~---~~f~~l~~L~~  292 (604)
                      .|.+|.|++|+|+.|.+..-.-+++|+.|.|.+|+|..+.. +-+..+++|+.|.|-+|.++....   .++..+++|+.
T Consensus        65 rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~  144 (233)
T KOG1644|consen   65 RLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRT  144 (233)
T ss_pred             ccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceE
Confidence            44455555555555555444445666666666666665432 334556677777777777765443   34556677777


Q ss_pred             eeccC
Q psy15407        293 LAIGG  297 (604)
Q Consensus       293 L~L~~  297 (604)
                      ||++.
T Consensus       145 LDF~k  149 (233)
T KOG1644|consen  145 LDFQK  149 (233)
T ss_pred             eehhh
Confidence            77665

>KOG1226|consensus

Probab=98.61  E-value=3.6e-07  Score=97.10  Aligned_cols=134  Identities=30%  Similarity=0.675  Sum_probs=90.8

Q ss_pred             CCCCCCcEEEeCCCCeEEecCCCCCCCCcccCCC---------cCCCC--CCCCCCCCceeecCCCeEEecCCCCc----
Q psy15407        442 HKCENNATCVDLIQAYECRCAPGFQGEFCQTKTP---------FCAGE--YNPCRNGARCLDHFSHYTCECTPGFS----  506 (604)
Q Consensus       442 ~~C~~~~~C~~~~~~~~C~C~~g~~g~~C~~~~~---------~C~~~--~~~C~~~~~C~~~~~~~~C~C~~g~~----  506 (604)
                      ..|..+|+.+-    ..|.|.+||.|..|+-..+         .|...  ...|+..|.|+-+    +|.|.+...    
T Consensus       467 ~~C~g~G~~~C----G~C~C~~G~~G~~CEC~~~~~ss~~~~~~Cr~~~~~~vCSgrG~C~CG----qC~C~~~~~~~i~  538 (783)
T KOG1226|consen  467 ALCHGNGTFVC----GQCRCDEGWLGKKCECSTDELSSSEEEDKCRENSDSPVCSGRGDCVCG----QCVCHKPDNGKIY  538 (783)
T ss_pred             cccCCCCcEEe----cceecCCCCCCCcccCCccccCcHhHHhhccCCCCCCCcCCCCcEeCC----ceEecCCCCCcee
Confidence            34665555543    2489999999999975432         23221  1268888888653    589988776    


Q ss_pred             CCcCcccCCCCCCC---CCCCCCEEeeCCCCeEeeeCCCCccCCCCcCcccccCCCCCCCCCCCC---CC-CCceeCCCC
Q psy15407        507 GVNCTVNVDDCVNH---MCQNGGTCVDGINDYTCKCEGDFVGKFCEIAPFVAMMYPQTSPCQHHD---CK-NGICFQPQG  579 (604)
Q Consensus       507 g~~c~~~~~~C~~~---~C~~~~~C~~~~~~y~C~C~~G~~G~~C~~~~~~~~~~~~~~~C~~~~---C~-~g~C~~~~g  579 (604)
                      |..|+-|.-.|..+   .|..+|.|.-+    +|+|.+||+|..|+.+.       ..+.|....   |. .|.|.-.  
T Consensus       539 G~fCECDnfsC~r~~g~lC~g~G~C~CG----~CvC~~GwtG~~C~C~~-------std~C~~~~G~iCSGrG~C~Cg--  605 (783)
T KOG1226|consen  539 GKFCECDNFSCERHKGVLCGGHGRCECG----RCVCNPGWTGSACNCPL-------STDTCESSDGQICSGRGTCECG--  605 (783)
T ss_pred             eeeeeccCcccccccCcccCCCCeEeCC----cEEcCCCCccCCCCCCC-------CCccccCCCCceeCCCceeeCC--
Confidence            99998766667654   59999999876    79999999999998642       234443221   21 2334332  


Q ss_pred             CCCeeeecCCC-CcCCCCCCCc
Q psy15407        580 SNDYLCKCAPG-YSGKESLLQQ  600 (604)
Q Consensus       580 ~~~~~C~C~~G-~~G~~C~~~~  600 (604)
                          +|+|... |+|+.||...
T Consensus       606 ----~C~C~~~~~sG~~CE~cp  623 (783)
T KOG1226|consen  606 ----RCKCTDPPYSGEFCEKCP  623 (783)
T ss_pred             ----ceEcCCCCcCcchhhcCC
Confidence                4888777 9999999754

>KOG1644|consensus

Probab=98.56  E-value=9.1e-08  Score=86.15  Aligned_cols=124  Identities=23%  Similarity=0.199  Sum_probs=94.3

Q ss_pred             CCeEEcCCCCCCcCCC--CCCccCcEEecCCCcceeecCCCccCCCCCCcEEeCCCCcceecCCCcCCCcccCCcCCCCC
Q psy15407         96 GTRVDCSQRGLKEIPK--DIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDNY  173 (604)
Q Consensus        96 ~~~l~cs~~~L~~iP~--~l~~~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~l~~  173 (604)
                      .+.+++++.++..+-.  ........+||++|.|..++.   |..++.|.+|.|++|+|+.|.+..-.-++         
T Consensus        21 e~e~~LR~lkip~ienlg~~~d~~d~iDLtdNdl~~l~~---lp~l~rL~tLll~nNrIt~I~p~L~~~~p---------   88 (233)
T KOG1644|consen   21 ERELDLRGLKIPVIENLGATLDQFDAIDLTDNDLRKLDN---LPHLPRLHTLLLNNNRITRIDPDLDTFLP---------   88 (233)
T ss_pred             ccccccccccccchhhccccccccceecccccchhhccc---CCCccccceEEecCCcceeeccchhhhcc---------
Confidence            5778888887765543  113345789999999999964   99999999999999999999986443332         


Q ss_pred             CCCCccccccEEEccCCccccccccccceeeeeeccccCCccccceeecCCCCceeeccC-CCCCCCCCCCeEEecCCcc
Q psy15407        174 CPPKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSN-FTFSPLSKLSQLILSYNKL  252 (604)
Q Consensus       174 ~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~i~~l~~-~~f~~l~~L~~L~Ls~N~l  252 (604)
                                                                 .|..|.|.+|+|..+.+ .-+..+++|++|.|-+|.+
T Consensus        89 -------------------------------------------~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv  125 (233)
T KOG1644|consen   89 -------------------------------------------NLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPV  125 (233)
T ss_pred             -------------------------------------------ccceEEecCcchhhhhhcchhccCCccceeeecCCch
Confidence                                                       56777788888877653 4467788999999999988


Q ss_pred             eeeec---cccCCCCcccEEEccCC
Q psy15407        253 QCIDR---DALAGLKSLRIISLHGN  274 (604)
Q Consensus       253 ~~i~~---~~f~~l~~L~~L~Ls~N  274 (604)
                      .....   ..+..+++|++||++.=
T Consensus       126 ~~k~~YR~yvl~klp~l~~LDF~kV  150 (233)
T KOG1644|consen  126 EHKKNYRLYVLYKLPSLRTLDFQKV  150 (233)
T ss_pred             hcccCceeEEEEecCcceEeehhhh
Confidence            76532   34567899999997643

>smart00082 LRRCT Leucine rich repeat C-terminal domain

Probab=98.51  E-value=3.8e-08  Score=70.42  Aligned_cols=50  Identities=14%  Similarity=0.351  Sum_probs=40.9

Q ss_pred             CceeeecchhhHHHHHHhCCccccCCCCcCCCCCcccccCcccccCCCCceee
Q psy15407         10 NDYTCKCEGDFVGKFCEIAPFVAMMYPQTSPCQHHDCKNGICFQPQGSNDYLC   62 (604)
Q Consensus        10 np~~C~C~l~w~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~c   62 (604)
                      |||.|||++.||..|+++...  ...++..+|..|..++ .++..+..++|.|
T Consensus         1 NP~~CdC~l~~~~~w~~~~~~--~~~~~~~~C~~P~~~~-~~l~~~~~~~~~C   50 (51)
T smart00082        1 NPFICDCELRWLLRWLQANEH--LQDPVSLRCASPSSLR-GPLLELLHSEFKC   50 (51)
T ss_pred             CCccCcCCchHHHHHHHhCCc--cCCCCCCEeCCcHHHH-hHHHcCCHhhCCC
Confidence            899999999999999998322  2234579999999999 5688888888877

>KOG1859|consensus

Probab=98.51  E-value=1.4e-09  Score=114.19  Aligned_cols=126  Identities=28%  Similarity=0.332  Sum_probs=98.2

Q ss_pred             CeEEcCCCCCCcCCCCC--CccCcEEecCCCcceeecCCCccCCCCCCcEEeCCCCcceecCCCcCCCcccCCcCCCCCC
Q psy15407         97 TRVDCSQRGLKEIPKDI--PLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDNYC  174 (604)
Q Consensus        97 ~~l~cs~~~L~~iP~~l--~~~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~l~~~  174 (604)
                      ...+++.|.|+.+-..+  .+.++.|+|++|+++.+.   ++..+++|++|||++|.|+.++--.-.+            
T Consensus       167 ~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~---~Lr~l~~LkhLDlsyN~L~~vp~l~~~g------------  231 (1096)
T KOG1859|consen  167 ATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD---NLRRLPKLKHLDLSYNCLRHVPQLSMVG------------  231 (1096)
T ss_pred             hhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH---HHHhcccccccccccchhccccccchhh------------
Confidence            35789999999887765  567899999999999985   3899999999999999999987533222            


Q ss_pred             CCCccccccEEEccCCccccccccccceeeeeeccccCCccccceeecCCCCceeeccCCCCCCCCCCCeEEecCCccee
Q psy15407        175 PPKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQC  254 (604)
Q Consensus       175 ~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~i~~l~~~~f~~l~~L~~L~Ls~N~l~~  254 (604)
                                                               -.|..|.|++|.++.+..  +.+|.+|+.|||++|-|..
T Consensus       232 -----------------------------------------c~L~~L~lrnN~l~tL~g--ie~LksL~~LDlsyNll~~  268 (1096)
T KOG1859|consen  232 -----------------------------------------CKLQLLNLRNNALTTLRG--IENLKSLYGLDLSYNLLSE  268 (1096)
T ss_pred             -----------------------------------------hhheeeeecccHHHhhhh--HHhhhhhhccchhHhhhhc
Confidence                                                     257778888888888764  6678888899999998876


Q ss_pred             eec-cccCCCCcccEEEccCCccccCC
Q psy15407        255 IDR-DALAGLKSLRIISLHGNDISMIP  280 (604)
Q Consensus       255 i~~-~~f~~l~~L~~L~Ls~N~l~~i~  280 (604)
                      ... ..+..|..|+.|+|.+|.|---|
T Consensus       269 hseL~pLwsLs~L~~L~LeGNPl~c~p  295 (1096)
T KOG1859|consen  269 HSELEPLWSLSSLIVLWLEGNPLCCAP  295 (1096)
T ss_pred             chhhhHHHHHHHHHHHhhcCCccccCH
Confidence            533 22445678889999999886443

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=98.31  E-value=2.5e-06  Score=74.37  Aligned_cols=115  Identities=23%  Similarity=0.361  Sum_probs=58.0

Q ss_pred             CcEEecCCCcceeecCCCccCCCCCCcEEeCCCCcceecCCCcCCCcccCCcCCCCCCCCCccccccEEEccCCcccccc
Q psy15407        117 TTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDNYCPPKCTCTVRVLFYDGRAGECYI  196 (604)
Q Consensus       117 ~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~l~~~~~~~~~~l~~l~~~~~~~~~~~  196 (604)
                      ++.+.+.. .+..|... +|.+.++|+.|.+.++ +..|...+|.+..                                
T Consensus        14 l~~i~~~~-~~~~I~~~-~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~--------------------------------   58 (129)
T PF13306_consen   14 LESITFPN-TIKKIGEN-AFSNCTSLKSINFPNN-LTSIGDNAFSNCK--------------------------------   58 (129)
T ss_dssp             --EEEETS-T--EE-TT-TTTT-TT-SEEEESST-TSCE-TTTTTT-T--------------------------------
T ss_pred             CCEEEECC-CeeEeChh-hccccccccccccccc-ccccceeeeeccc--------------------------------
Confidence            45555553 45566543 3666666666666554 6666666665543                                


Q ss_pred             ccccceeeeeeccccCCccccceeecCCCCceeeccCCCCCCCCCCCeEEecCCcceeeeccccCCCCcccEEEccCCcc
Q psy15407        197 AVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDI  276 (604)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~i~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l  276 (604)
                                          +|+.+.+.. .+..++...|...++|+.+.+..+ +..|...+|.+. +|+.+.+.. .+
T Consensus        59 --------------------~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~  114 (129)
T PF13306_consen   59 --------------------SLESITFPN-NLKSIGDNAFSNCTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NI  114 (129)
T ss_dssp             --------------------T-EEEEETS-TT-EE-TTTTTT-TTECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-
T ss_pred             --------------------ccccccccc-cccccccccccccccccccccCcc-ccEEchhhhcCC-CceEEEECC-Cc
Confidence                                455556644 666677777888888888888765 778878888876 888887765 67


Q ss_pred             ccCCcccccCcccc
Q psy15407        277 SMIPEGAFADLHAI  290 (604)
Q Consensus       277 ~~i~~~~f~~l~~L  290 (604)
                      +.|+..+|..-++|
T Consensus       115 ~~i~~~~F~~~~~l  128 (129)
T PF13306_consen  115 TKIEENAFKNCTKL  128 (129)
T ss_dssp             SS----GGG-----
T ss_pred             cEECCccccccccC
Confidence            77777777766555

>KOG4579|consensus

Probab=98.27  E-value=2.2e-08  Score=84.33  Aligned_cols=86  Identities=21%  Similarity=0.257  Sum_probs=61.0

Q ss_pred             cceeecCCCCceeeccCCCCCCCCCCCeEEecCCcceeeeccccCCCCcccEEEccCCccccCCcccccCcccceeeecc
Q psy15407        217 STMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIG  296 (604)
Q Consensus       217 ~L~~L~Ls~N~i~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~  296 (604)
                      .++.|+|++|.|+.+|.. |..++.|+.|+|+.|.|...+ ..|..|.+|..|+..+|.+..|+-+.|. -..+-.++|.
T Consensus        78 t~t~lNl~~neisdvPeE-~Aam~aLr~lNl~~N~l~~~p-~vi~~L~~l~~Lds~~na~~eid~dl~~-s~~~al~~lg  154 (177)
T KOG4579|consen   78 TATTLNLANNEISDVPEE-LAAMPALRSLNLRFNPLNAEP-RVIAPLIKLDMLDSPENARAEIDVDLFY-SSLPALIKLG  154 (177)
T ss_pred             hhhhhhcchhhhhhchHH-HhhhHHhhhcccccCccccch-HHHHHHHhHHHhcCCCCccccCcHHHhc-cccHHHHHhc
Confidence            566778888888888775 788888888888888887774 3444588888888888888888776442 1223344567


Q ss_pred             CCCcccccC
Q psy15407        297 GNPLYCDCG  305 (604)
Q Consensus       297 ~Npl~CdC~  305 (604)
                      .+||.=.|.
T Consensus       155 nepl~~~~~  163 (177)
T KOG4579|consen  155 NEPLGDETK  163 (177)
T ss_pred             CCcccccCc
Confidence            778875554

>KOG4579|consensus

Probab=98.27  E-value=3.9e-08  Score=82.85  Aligned_cols=65  Identities=20%  Similarity=0.292  Sum_probs=33.4

Q ss_pred             eEEcCCCCCCcCCCCC-----CccCcEEecCCCcceeecCCCccCCCCCCcEEeCCCCcceecCCCcCCCcc
Q psy15407         98 RVDCSQRGLKEIPKDI-----PLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGEN  164 (604)
Q Consensus        98 ~l~cs~~~L~~iP~~l-----~~~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~l~  164 (604)
                      .+|+++..|-.|++.+     ...++..+|++|.+..+|+. +-..++.++.|+|++|+|+.++.. |+.++
T Consensus        31 ~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~k-ft~kf~t~t~lNl~~neisdvPeE-~Aam~  100 (177)
T KOG4579|consen   31 FLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKK-FTIKFPTATTLNLANNEISDVPEE-LAAMP  100 (177)
T ss_pred             hcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHH-HhhccchhhhhhcchhhhhhchHH-HhhhH
Confidence            3455555555444432     11224456666666666543 223344666666666666666554 54443

>KOG2982|consensus

Probab=98.26  E-value=9.1e-08  Score=90.91  Aligned_cols=180  Identities=16%  Similarity=0.145  Sum_probs=102.7

Q ss_pred             ccCcEEecCCCcceeecCC-CccCCCCCCcEEeCCCCcceecCCCcCCCcccCCcCCCCCCCCCccccccEEEccCCccc
Q psy15407        115 LYTTELILNDNEIGKIKSD-GLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDNYCPPKCTCTVRVLFYDGRAGE  193 (604)
Q Consensus       115 ~~~~~L~L~~N~i~~i~~~-~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~l~~~~~~~~~~l~~l~~~~~~~~  193 (604)
                      ..+++|+|.+|.|+....- .++.+||.|+.|+|+.|.+.......-..+.+|+.|.|++-.+.+...-..+....-..+
T Consensus        71 ~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vte  150 (418)
T KOG2982|consen   71 TDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTE  150 (418)
T ss_pred             hhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhh
Confidence            3458999999999765321 236799999999999999876443322467788888777643333222222222222223


Q ss_pred             cccccccceeeeeeccccCCccccceeec---------CCCCceeeccCCCCCCCCCCCeEEecCCcceeeec-cccCCC
Q psy15407        194 CYIAVELFSSRIRVSYYVGNYPVSTMYRD---------LSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDR-DALAGL  263 (604)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~---------Ls~N~i~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~-~~f~~l  263 (604)
                      +.++.|.+...+.-..-...+...+++|.         ++-|++..+       ++++..+.+..+.|+.+.. ..+..+
T Consensus       151 lHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~-------Fpnv~sv~v~e~PlK~~s~ek~se~~  223 (418)
T KOG2982|consen  151 LHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRI-------FPNVNSVFVCEGPLKTESSEKGSEPF  223 (418)
T ss_pred             hhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhh-------cccchheeeecCcccchhhcccCCCC
Confidence            33322211111000000001111222222         222333222       4567777777787766543 445667


Q ss_pred             CcccEEEccCCccccCCc-ccccCcccceeeeccCCCcc
Q psy15407        264 KSLRIISLHGNDISMIPE-GAFADLHAITHLAIGGNPLY  301 (604)
Q Consensus       264 ~~L~~L~Ls~N~l~~i~~-~~f~~l~~L~~L~L~~Npl~  301 (604)
                      +.+..|+|+.|+|.+... +.+..++.|..|.+.+||+.
T Consensus       224 p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~  262 (418)
T KOG2982|consen  224 PSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLS  262 (418)
T ss_pred             CcchhhhhcccccccHHHHHHHcCCchhheeeccCCccc
Confidence            777788888888875543 45777888888888888874

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.25  E-value=7.1e-07  Score=61.08  Aligned_cols=40  Identities=33%  Similarity=0.419  Sum_probs=25.1

Q ss_pred             CCCCeEEecCCcceeeeccccCCCCcccEEEccCCccccCC
Q psy15407        240 SKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIP  280 (604)
Q Consensus       240 ~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~  280 (604)
                      ++|++|+|++|+|+.|++ .|..|++|+.|+|++|+|+.++
T Consensus         1 ~~L~~L~l~~N~i~~l~~-~l~~l~~L~~L~l~~N~i~~i~   40 (44)
T PF12799_consen    1 KNLEELDLSNNQITDLPP-ELSNLPNLETLNLSNNPISDIS   40 (44)
T ss_dssp             TT-SEEEETSSS-SSHGG-HGTTCTTSSEEEETSSCCSBEG
T ss_pred             CcceEEEccCCCCcccCc-hHhCCCCCCEEEecCCCCCCCc
Confidence            356677777777776644 4666777777777777776654

...

>PRK15386 type III secretion protein GogB; Provisional

Probab=98.19  E-value=3.8e-06  Score=85.80  Aligned_cols=57  Identities=18%  Similarity=0.370  Sum_probs=45.9

Q ss_pred             CCeEEcCCCCCCcCCCCCCccCcEEecCC-CcceeecCCCccCCCCCCcEEeCCCC-cceecCC
Q psy15407         96 GTRVDCSQRGLKEIPKDIPLYTTELILND-NEIGKIKSDGLFGRLPNLIKLDLRRN-QVTGIED  157 (604)
Q Consensus        96 ~~~l~cs~~~L~~iP~~l~~~~~~L~L~~-N~i~~i~~~~~f~~l~~L~~L~Ls~N-~i~~i~~  157 (604)
                      .+.|+++++.|+++| .+|..+++|.|++ +.++.+|..  +  .++|++|+|+++ .|..+++
T Consensus        54 l~~L~Is~c~L~sLP-~LP~sLtsL~Lsnc~nLtsLP~~--L--P~nLe~L~Ls~Cs~L~sLP~  112 (426)
T PRK15386         54 SGRLYIKDCDIESLP-VLPNELTEITIENCNNLTTLPGS--I--PEGLEKLTVCHCPEISGLPE  112 (426)
T ss_pred             CCEEEeCCCCCcccC-CCCCCCcEEEccCCCCcccCCch--h--hhhhhheEccCccccccccc
Confidence            378999999999999 6999999999987 777777642  3  368999999998 6765543

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=98.19  E-value=4.6e-06  Score=72.62  Aligned_cols=111  Identities=22%  Similarity=0.345  Sum_probs=77.2

Q ss_pred             eecCCCccCCCCCCcEEeCCCCcceecCCCcCCCcccCCcCCCCCCCCCccccccEEEccCCccccccccccceeeeeec
Q psy15407        129 KIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDNYCPPKCTCTVRVLFYDGRAGECYIAVELFSSRIRVS  208 (604)
Q Consensus       129 ~i~~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~  208 (604)
                      .|+. .+|.+..+|+.+.+.. .++.|...+|.+..                                            
T Consensus         2 ~i~~-~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~--------------------------------------------   35 (129)
T PF13306_consen    2 SIGN-NAFYNCSNLESITFPN-TIKKIGENAFSNCT--------------------------------------------   35 (129)
T ss_dssp             EE-T-TTTTT-TT--EEEETS-T--EE-TTTTTT-T--------------------------------------------
T ss_pred             EECH-HHHhCCCCCCEEEECC-CeeEeChhhccccc--------------------------------------------
Confidence            4555 4599999999999985 79999999998875                                            


Q ss_pred             cccCCccccceeecCCCCceeeccCCCCCCCCCCCeEEecCCcceeeeccccCCCCcccEEEccCCccccCCcccccCcc
Q psy15407        209 YYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLH  288 (604)
Q Consensus       209 ~~~~~~~~~L~~L~Ls~N~i~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~  288 (604)
                              +|+.+++..+ +..+...+|.+..+|+.+.+.. .+..+...+|...++|+.+++..| +..|+..+|... 
T Consensus        36 --------~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~~-~~~i~~~~f~~~-  103 (129)
T PF13306_consen   36 --------SLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPSN-ITEIGSSSFSNC-  103 (129)
T ss_dssp             --------T-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETTT--BEEHTTTTTT--
T ss_pred             --------cccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccccccCcc-ccEEchhhhcCC-
Confidence                    4556667664 8888899999998999999976 888999999999999999999886 889999999887 


Q ss_pred             cceeeeccC
Q psy15407        289 AITHLAIGG  297 (604)
Q Consensus       289 ~L~~L~L~~  297 (604)
                      +|+.+.+..
T Consensus       104 ~l~~i~~~~  112 (129)
T PF13306_consen  104 NLKEINIPS  112 (129)
T ss_dssp             T--EEE-TT
T ss_pred             CceEEEECC
Confidence            888888765

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.15  E-value=1.1e-06  Score=60.05  Aligned_cols=40  Identities=33%  Similarity=0.533  Sum_probs=34.2

Q ss_pred             cCcEEecCCCcceeecCCCccCCCCCCcEEeCCCCcceecCC
Q psy15407        116 YTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIED  157 (604)
Q Consensus       116 ~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i~~  157 (604)
                      .+++|+|++|+|+.|++.  |++|++|+.|+|++|+|+.+++
T Consensus         2 ~L~~L~l~~N~i~~l~~~--l~~l~~L~~L~l~~N~i~~i~~   41 (44)
T PF12799_consen    2 NLEELDLSNNQITDLPPE--LSNLPNLETLNLSNNPISDISP   41 (44)
T ss_dssp             T-SEEEETSSS-SSHGGH--GTTCTTSSEEEETSSCCSBEGG
T ss_pred             cceEEEccCCCCcccCch--HhCCCCCCEEEecCCCCCCCcC
Confidence            578999999999999874  8999999999999999998754

...

>PF06247 Plasmod_Pvs28: Plasmodium ookinete surface protein Pvs28; InterPro: IPR010423 This family consists of several ookinete surface protein (Pvs28) from several species of Plasmodium

Probab=98.15  E-value=7.1e-07  Score=78.78  Aligned_cols=138  Identities=28%  Similarity=0.708  Sum_probs=82.2

Q ss_pred             CCCCCcEEEeCCCCeEEecCCCCC---CCCcccCCCcCCC---CCCCCCCCCceeecC-----CCeEEecCCCCcCCcCc
Q psy15407        443 KCENNATCVDLIQAYECRCAPGFQ---GEFCQTKTPFCAG---EYNPCRNGARCLDHF-----SHYTCECTPGFSGVNCT  511 (604)
Q Consensus       443 ~C~~~~~C~~~~~~~~C~C~~g~~---g~~C~~~~~~C~~---~~~~C~~~~~C~~~~-----~~~~C~C~~g~~g~~c~  511 (604)
                      .|.+ |..+...+.|.|.|.+||.   -..|+... +|..   ...+|...++|++..     ..|+|.|.+||.-..-.
T Consensus         7 ~CKN-G~LiQMSNHfEC~Cnegfvl~~EntCE~kv-~C~~~e~~~K~Cgdya~C~~~~~~~~~~~~~C~C~~gY~~~~~v   84 (197)
T PF06247_consen    7 ICKN-GYLIQMSNHFECKCNEGFVLKNENTCEEKV-ECDKLENVNKPCGDYAKCINQANKGEERAYKCDCINGYILKQGV   84 (197)
T ss_dssp             --BT-EEEEEESSEEEEEESTTEEEEETTEEEE-----SG-GGTTSEEETTEEEEE-SSTTSSTSEEEEE-TTEEESSSS
T ss_pred             cccC-CEEEEccCceEEEcCCCcEEccccccccce-ecCcccccCccccchhhhhcCCCcccceeEEEecccCceeeCCe
Confidence            3443 6777778889999999996   45676443 4543   235799999998765     57999999999743322


Q ss_pred             ccCCCCCCCCCCCCCEEee---CCCCeEeeeCCCCc---cCCCCcCcccccCCCCCCCCCCCCCCCCc-eeCCCCCCCee
Q psy15407        512 VNVDDCVNHMCQNGGTCVD---GINDYTCKCEGDFV---GKFCEIAPFVAMMYPQTSPCQHHDCKNGI-CFQPQGSNDYL  584 (604)
Q Consensus       512 ~~~~~C~~~~C~~~~~C~~---~~~~y~C~C~~G~~---G~~C~~~~~~~~~~~~~~~C~~~~C~~g~-C~~~~g~~~~~  584 (604)
                      -..+.|....|. .|.|+-   .+....|.|.-|++   ...|...        ....|+.. |..+. |....  +-|+
T Consensus        85 Cvp~~C~~~~Cg-~GKCI~d~~~~~~~~CSC~IGkV~~dn~kCtk~--------G~T~C~LK-Ck~nE~CK~~~--~~Y~  152 (197)
T PF06247_consen   85 CVPNKCNNKDCG-SGKCILDPDNPNNPTCSCNIGKVPDDNKKCTKT--------GETKCSLK-CKENEECKLVD--GYYK  152 (197)
T ss_dssp             EEEGGGSS---T-TEEEEEEEGGGSEEEEEE-TEEETTTTTESEEE--------E---------TTTEEEEEET--TEEE
T ss_pred             EchhhcCceecC-CCeEEecCCCCCCceeEeeeceEeccCCcccCC--------Cccceeee-cCCCcceeeeC--cEEE
Confidence            234667777888 589974   33456999999998   3345443        24566643 44444 99998  8899


Q ss_pred             eecCCCCcCC
Q psy15407        585 CKCAPGYSGK  594 (604)
Q Consensus       585 C~C~~G~~G~  594 (604)
                      |.|.+||.|.
T Consensus       153 C~~~~~~~~~  162 (197)
T PF06247_consen  153 CVCKEGFPGD  162 (197)
T ss_dssp             EEE-TT-EEE
T ss_pred             eecCCCCCCC
Confidence            9999999753

Pvs25 and Pvs28 are expressed on the surface of ookinetes. These proteins are potential candidates for vaccine and induce antibodies that block the infectivity of Plasmodium vivax in immunised animals [].; GO: 0009986 cell surface, 0016020 membrane; PDB: 1Z3G_B 1Z1Y_B 1Z27_A.

>KOG1836|consensus

Probab=98.13  E-value=2.2e-05  Score=93.23  Aligned_cols=215  Identities=27%  Similarity=0.568  Sum_probs=121.9

Q ss_pred             eeeCCCCCcCCCCcccC-----------CCCCCCCCCCCC---eeeeCC--------CCceEe-eCCCCCcCCCCCcCCC
Q psy15407        381 QCRCTPGYHGQHCEFMI-----------DACYGNPCRNSG---TCKLLE--------EGRFNC-ECAPGYTGDRCEINID  437 (604)
Q Consensus       381 ~C~C~~g~~G~~c~~~~-----------~~C~~~~C~~~~---~C~~~~--------~~~~~C-~C~~g~~g~~C~~~~~  437 (604)
                      .|.|++||+|..|+.-.           +.|...||..++   +|...+        ..+-.| +|..||.|..=.....
T Consensus       696 ~c~C~~g~tG~~Ce~C~~gfrr~~~~~~~~~~c~~C~cngh~~~Cd~~tG~C~C~~~t~G~~C~~C~~GfYg~~~~~~~~  775 (1705)
T KOG1836|consen  696 QCTCPVGYTGQFCESCAPGFRRLSPQLGPFCPCIPCDCNGHSNICDPRTGQCKCKHNTFGGQCAQCVDGFYGLPDLGTSG  775 (1705)
T ss_pred             hccCCCCcccchhhhcchhhhcccccCCCCCcccccccCCccccccCCCCceecccCCCCCchhhhcCCCCCccccCCCC
Confidence            49999999999997311           112223343333   343211        111123 4666666654332233


Q ss_pred             cCCCCCCCCCcEEEeC--CCCeEEe-cCCCCCCCCcccCCCcCCCC-------CCC-----------------CCC-CC-
Q psy15407        438 DCLSHKCENNATCVDL--IQAYECR-CAPGFQGEFCQTKTPFCAGE-------YNP-----------------CRN-GA-  488 (604)
Q Consensus       438 ~C~~~~C~~~~~C~~~--~~~~~C~-C~~g~~g~~C~~~~~~C~~~-------~~~-----------------C~~-~~-  488 (604)
                      +|.+-+|.+++.|...  .....|+ |++||+|..|+...+..-..       ..+                 |.. .+ 
T Consensus       776 dC~~C~Cp~~~~~~~~~~~~~~iCk~Cp~gytG~rCe~c~dgyfg~p~~~~~~~~~c~~c~c~~n~dp~~~g~c~~~tg~  855 (1705)
T KOG1836|consen  776 DCQPCPCPNGGACGQTPEILEVVCKNCPPGYTGLRCEECADGYFGNPLGHDGDVRPCQSCQCNFNVDPNAFGNCNRLTGE  855 (1705)
T ss_pred             CCccCCCCCChhhcCcCcccceecCCCCCCCcccccccCCCccccCCCCCCCCcccCccceeccccCccccccccccccc
Confidence            4888899999888764  3567898 99999999997543221110       011                 111 11 


Q ss_pred             --ceeecCCCeEE-ecCCCCcCCcCc-ccCCCCCCCCCCCC------CEEeeCCCCeEeeeCCCCccCCCCcCcccccCC
Q psy15407        489 --RCLDHFSHYTC-ECTPGFSGVNCT-VNVDDCVNHMCQNG------GTCVDGINDYTCKCEGDFVGKFCEIAPFVAMMY  558 (604)
Q Consensus       489 --~C~~~~~~~~C-~C~~g~~g~~c~-~~~~~C~~~~C~~~------~~C~~~~~~y~C~C~~G~~G~~C~~~~~~~~~~  558 (604)
                        +|+....+.+| .|.+||.|..-. ...+.|..-.|...      ..|....|  .|.|.+.-.|..|..+-..-+..
T Consensus       856 c~~ci~nT~g~~cd~c~~g~~gd~l~~~p~~~c~~c~c~p~gs~~~~~~c~~~tG--Qcec~~~v~g~~c~~c~~g~fnl  933 (1705)
T KOG1836|consen  856 CLKCIHNTAGEYCDLCKEGYFGDPLAPNPEDKCFACGCVPAGSELPSLTCNPVTG--QCECKPNVEGRDCLYCFKGFFNL  933 (1705)
T ss_pred             eeeccCCcccccccccccCccccccCCCcCCccccccCccCCcccccccCCCccc--ceeccCCCCcccccccccccccc
Confidence              22222333455 377777776543 12233433233221      23555555  78888888888887654433344


Q ss_pred             CCCCCCCCCCCCC-----CceeCCCCCCCeeeecCCCCcCCCCCCCcc
Q psy15407        559 PQTSPCQHHDCKN-----GICFQPQGSNDYLCKCAPGYSGKESLLQQT  601 (604)
Q Consensus       559 ~~~~~C~~~~C~~-----g~C~~~~g~~~~~C~C~~G~~G~~C~~~~~  601 (604)
                      .....|....|..     ..|....|+    |.|.+|-+|.+|+..+.
T Consensus       934 ~s~~gC~~c~c~~~gs~~~~c~~~tGq----c~c~~gVtgqrc~qc~~  977 (1705)
T KOG1836|consen  934 NSGVGCEPCNCDPTGSESSDCDVGTGQ----CYCRPGVTGQRCDQCET  977 (1705)
T ss_pred             CCCCCcccccccccccccccccccCCc----eeeecCccccccCcccc
Confidence            4445666655542     237666654    99999999999986553

>smart00082 LRRCT Leucine rich repeat C-terminal domain

Probab=98.11  E-value=5.1e-07  Score=64.47  Aligned_cols=49  Identities=41%  Similarity=0.923  Sum_probs=39.8

Q ss_pred             CCcccccCCCcccccccccc--ccCCccccCCCCcccccccccCCCCceeec
Q psy15407        298 NPLYCDCGLAWLSEWVKRDY--VEPGIARCTEPASMRDKLLLTAPASSFQCK  347 (604)
Q Consensus       298 Npl~CdC~l~~l~~~~~~~~--~~~~~~~C~~P~~l~g~~l~~~~~~~~~C~  347 (604)
                      |||.|||++.||..|++...  .....+.|.+|..++ ..+.++..++|.|.
T Consensus         1 NP~~CdC~l~~~~~w~~~~~~~~~~~~~~C~~P~~~~-~~l~~~~~~~~~C~   51 (51)
T smart00082        1 NPFICDCELRWLLRWLQANEHLQDPVSLRCASPSSLR-GPLLELLHSEFKCP   51 (51)
T ss_pred             CCccCcCCchHHHHHHHhCCccCCCCCCEeCCcHHHH-hHHHcCCHhhCCCc
Confidence            89999999999999998732  234568999999999 55888887788773

>KOG1836|consensus

Probab=98.10  E-value=6.4e-05  Score=89.36  Aligned_cols=206  Identities=28%  Similarity=0.625  Sum_probs=111.2

Q ss_pred             CCCCCcCCCCcccCCCCCCCCCCCCCeeeeCC-CCceEee-CCCCCcCCCCCcCCC--------------cCCCCCCCCC
Q psy15407        384 CTPGYHGQHCEFMIDACYGNPCRNSGTCKLLE-EGRFNCE-CAPGYTGDRCEINID--------------DCLSHKCENN  447 (604)
Q Consensus       384 C~~g~~G~~c~~~~~~C~~~~C~~~~~C~~~~-~~~~~C~-C~~g~~g~~C~~~~~--------------~C~~~~C~~~  447 (604)
                      |..||.|..--.....|..-+|.+++.|.... .....|. |++||+|.+|+...+              .|.+.+|..+
T Consensus       761 C~~GfYg~~~~~~~~dC~~C~Cp~~~~~~~~~~~~~~iCk~Cp~gytG~rCe~c~dgyfg~p~~~~~~~~~c~~c~c~~n  840 (1705)
T KOG1836|consen  761 CVDGFYGLPDLGTSGDCQPCPCPNGGACGQTPEILEVVCKNCPPGYTGLRCEECADGYFGNPLGHDGDVRPCQSCQCNFN  840 (1705)
T ss_pred             hcCCCCCccccCCCCCCccCCCCCChhhcCcCcccceecCCCCCCCcccccccCCCccccCCCCCCCCcccCccceeccc
Confidence            44555543322222338888888888886654 4567897 999999999984332              3333333321


Q ss_pred             -------------cEE---EeCCCCeEE-ecCCCCCCCCccc-CCCcCCCCCCCCCCC------CceeecCCCeEEecCC
Q psy15407        448 -------------ATC---VDLIQAYEC-RCAPGFQGEFCQT-KTPFCAGEYNPCRNG------ARCLDHFSHYTCECTP  503 (604)
Q Consensus       448 -------------~~C---~~~~~~~~C-~C~~g~~g~~C~~-~~~~C~~~~~~C~~~------~~C~~~~~~~~C~C~~  503 (604)
                                   +.|   +....+..| .|.+||.|+.-.. ..+.|...  .|...      ..|...  ...|.|.+
T Consensus       841 ~dp~~~g~c~~~tg~c~~ci~nT~g~~cd~c~~g~~gd~l~~~p~~~c~~c--~c~p~gs~~~~~~c~~~--tGQcec~~  916 (1705)
T KOG1836|consen  841 VDPNAFGNCNRLTGECLKCIHNTAGEYCDLCKEGYFGDPLAPNPEDKCFAC--GCVPAGSELPSLTCNPV--TGQCECKP  916 (1705)
T ss_pred             cCccccccccccccceeeccCCcccccccccccCccccccCCCcCCccccc--cCccCCcccccccCCCc--ccceeccC
Confidence                         112   222223334 4777777653220 00111100  11111      122211  22455555


Q ss_pred             CCcCCcCcc------c---CCCCCCCCCCCC----CEEeeCCCCeEeeeCCCCccCCCCcCcccccCCCCCCCCCCCCCC
Q psy15407        504 GFSGVNCTV------N---VDDCVNHMCQNG----GTCVDGINDYTCKCEGDFVGKFCEIAPFVAMMYPQTSPCQHHDCK  570 (604)
Q Consensus       504 g~~g~~c~~------~---~~~C~~~~C~~~----~~C~~~~~~y~C~C~~G~~G~~C~~~~~~~~~~~~~~~C~~~~C~  570 (604)
                      .-.|..|..      .   ...|..-+|..-    ..|....|  .|.|.+|.+|.+|..+....+... ...|....|.
T Consensus       917 ~v~g~~c~~c~~g~fnl~s~~gC~~c~c~~~gs~~~~c~~~tG--qc~c~~gVtgqrc~qc~~~~~~~~-~~gc~~c~c~  993 (1705)
T KOG1836|consen  917 NVEGRDCLYCFKGFFNLNSGVGCEPCNCDPTGSESSDCDVGTG--QCYCRPGVTGQRCDQCETYHFGFQ-TEGCGLCECD  993 (1705)
T ss_pred             CCCccccccccccccccCCCCCcccccccccccccccccccCC--ceeeecCccccccCccccCccccc-ccCCcceecc
Confidence            555444421      0   113433344432    36766656  899999999999988754433332 3566665564


Q ss_pred             C-C----ceeCCCCCCCeeeecCCCCcCCCCCCCc
Q psy15407        571 N-G----ICFQPQGSNDYLCKCAPGYSGKESLLQQ  600 (604)
Q Consensus       571 ~-g----~C~~~~g~~~~~C~C~~G~~G~~C~~~~  600 (604)
                      . |    .|....|    +|.|++|+.|.+|+...
T Consensus       994 ~~Gs~~~qc~~~~G----~c~c~~~~~g~~c~~c~ 1024 (1705)
T KOG1836|consen  994 PLGSRGFQCDPEDG----QCPCRPGFEGRRCDQCE 1024 (1705)
T ss_pred             cCCcccceecccCC----eeeecCCCCCccccccc
Confidence            3 3    2776564    59999999998887554

>PF00008 EGF: EGF-like domain This is a sub-family of the Pfam entry This is a sub-family of the Pfam entry; InterPro: IPR006209 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins

Probab=98.06  E-value=2.8e-06  Score=53.59  Aligned_cols=31  Identities=48%  Similarity=1.084  Sum_probs=24.9

Q ss_pred             CCCCCCCCCCEEeeCC-CCeEeeeCCCCccCC
Q psy15407        517 CVNHMCQNGGTCVDGI-NDYTCKCEGDFVGKF  547 (604)
Q Consensus       517 C~~~~C~~~~~C~~~~-~~y~C~C~~G~~G~~  547 (604)
                      |..++|.++|+|++.. ++|+|.|++||+|++
T Consensus         1 C~~~~C~n~g~C~~~~~~~y~C~C~~G~~G~~   32 (32)
T PF00008_consen    1 CSSNPCQNGGTCIDLPGGGYTCECPPGYTGKR   32 (32)
T ss_dssp             TTTTSSTTTEEEEEESTSEEEEEEBTTEESTT
T ss_pred             CCCCcCCCCeEEEeCCCCCEEeECCCCCccCC
Confidence            4556888888888877 888888888888863

The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length.; GO: 0005515 protein binding; PDB: 1WHE_A 1CCF_A 1APO_A 1WHF_A 2VJ3_A 1TOZ_A 4D90_B 3CFW_A 1EDM_B 1IXA_A ....

>smart00179 EGF_CA Calcium-binding EGF-like domain

Probab=97.93  E-value=1.4e-05  Score=53.33  Aligned_cols=36  Identities=44%  Similarity=1.218  Sum_probs=29.8

Q ss_pred             CCCCCC-CCCCCCCEEeeCCCCeEeeeCCCCc-cCCCC
Q psy15407        514 VDDCVN-HMCQNGGTCVDGINDYTCKCEGDFV-GKFCE  549 (604)
Q Consensus       514 ~~~C~~-~~C~~~~~C~~~~~~y~C~C~~G~~-G~~C~  549 (604)
                      +++|.. .+|.+++.|++..++|.|.|++||. |..|+
T Consensus         2 ~~~C~~~~~C~~~~~C~~~~g~~~C~C~~g~~~g~~C~   39 (39)
T smart00179        2 IDECASGNPCQNGGTCVNTVGSYRCECPPGYTDGRNCE   39 (39)
T ss_pred             cccCcCCCCcCCCCEeECCCCCeEeECCCCCccCCcCC
Confidence            567776 6888888999888999999999998 87764

>KOG4658|consensus

Probab=97.93  E-value=4.2e-06  Score=95.12  Aligned_cols=140  Identities=26%  Similarity=0.257  Sum_probs=88.6

Q ss_pred             CCCCcCCCCC-CccCcEEecCCCcceeecCCCccCCCCCCcEEeCCCCc--ceecCCCcCCCcccCCcCCCCCCCCCccc
Q psy15407        104 RGLKEIPKDI-PLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQ--VTGIEDNAFEGENDQGCLGDNYCPPKCTC  180 (604)
Q Consensus       104 ~~L~~iP~~l-~~~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~--i~~i~~~~f~~l~~L~~L~l~~~~~~~~~  180 (604)
                      .++.++|... +..++.+.+-+|.+..++..   ...++|++|-+..|.  +..++...|..++.|+.|+|++|..    
T Consensus       511 ~~~~~~~~~~~~~~~rr~s~~~~~~~~~~~~---~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~----  583 (889)
T KOG4658|consen  511 VGLSEIPQVKSWNSVRRMSLMNNKIEHIAGS---SENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSS----  583 (889)
T ss_pred             cCccccccccchhheeEEEEeccchhhccCC---CCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCc----
Confidence            3455566544 44567777888888777543   334578888888775  6777777777777666666664321    


Q ss_pred             cccEEEccCCccccccccccceeeeeeccccCCccccceeecCCCCceeeccCCCCCCCCCCCeEEecCCcceeeecccc
Q psy15407        181 TVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDAL  260 (604)
Q Consensus       181 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~i~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f  260 (604)
                                             ...++...+.+ .+|++|+|+...|..+|. .|.+|.+|.+|+|..+.-....+..+
T Consensus       584 -----------------------l~~LP~~I~~L-i~LryL~L~~t~I~~LP~-~l~~Lk~L~~Lnl~~~~~l~~~~~i~  638 (889)
T KOG4658|consen  584 -----------------------LSKLPSSIGEL-VHLRYLDLSDTGISHLPS-GLGNLKKLIYLNLEVTGRLESIPGIL  638 (889)
T ss_pred             -----------------------cCcCChHHhhh-hhhhcccccCCCccccch-HHHHHHhhheeccccccccccccchh
Confidence                                   01111111111 267777888877777766 57777778888887776555446666


Q ss_pred             CCCCcccEEEccCCc
Q psy15407        261 AGLKSLRIISLHGND  275 (604)
Q Consensus       261 ~~l~~L~~L~Ls~N~  275 (604)
                      ..|.+|++|.|..-.
T Consensus       639 ~~L~~Lr~L~l~~s~  653 (889)
T KOG4658|consen  639 LELQSLRVLRLPRSA  653 (889)
T ss_pred             hhcccccEEEeeccc
Confidence            667788877776554

>KOG1909|consensus

Probab=97.88  E-value=3.6e-07  Score=88.99  Aligned_cols=85  Identities=24%  Similarity=0.271  Sum_probs=63.1

Q ss_pred             ccceeecCCCCceeecc----CCCCCCCCCCCeEEecCCcceeeecccc-----CCCCcccEEEccCCccccCC----cc
Q psy15407        216 VSTMYRDLSNNQIGFLS----NFTFSPLSKLSQLILSYNKLQCIDRDAL-----AGLKSLRIISLHGNDISMIP----EG  282 (604)
Q Consensus       216 ~~L~~L~Ls~N~i~~l~----~~~f~~l~~L~~L~Ls~N~l~~i~~~~f-----~~l~~L~~L~Ls~N~l~~i~----~~  282 (604)
                      ++|+.|||..|.++.-.    ..++..+++|++|+|++..|+.--..+|     ...++|++|.|.+|.|+.-.    ..
T Consensus       213 ~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~  292 (382)
T KOG1909|consen  213 PHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAA  292 (382)
T ss_pred             CcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHH
Confidence            48889999999887532    3467788899999999988876433222     24689999999999988321    12


Q ss_pred             cccCcccceeeeccCCCc
Q psy15407        283 AFADLHAITHLAIGGNPL  300 (604)
Q Consensus       283 ~f~~l~~L~~L~L~~Npl  300 (604)
                      .....+.|..|+|++|.+
T Consensus       293 ~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  293 CMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             HHhcchhhHHhcCCcccc
Confidence            345578899999999999

>PF01462 LRRNT: Leucine rich repeat N-terminal domain; InterPro: IPR000372 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=97.82  E-value=1.3e-05  Score=48.65  Aligned_cols=28  Identities=57%  Similarity=1.330  Sum_probs=23.6

Q ss_pred             CCCCCCeeCCCeEEcCCCCCCcCCCCCC
Q psy15407         87 ACPSGCSCDGTRVDCSQRGLKEIPKDIP  114 (604)
Q Consensus        87 ~CP~~C~C~~~~l~cs~~~L~~iP~~l~  114 (604)
                      .||..|+|..++|+|++.+|++||..||
T Consensus         1 ~CP~~C~C~~~~V~C~~~~L~~vP~~lP   28 (28)
T PF01462_consen    1 ACPRPCTCSGLTVDCSGRGLTAVPSDLP   28 (28)
T ss_dssp             SSETTSEEETTEEEETTSS-SSS-STS-
T ss_pred             CcCCCCEecCCEeECCCCCCCccCCCCc
Confidence            4899999999999999999999999875

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. LRRs are often flanked by cysteine-rich domains: an N-terminal LRR domain and a C-terminal LRR domain (IPR000483 from INTERPRO). This entry represents the N-terminal LRR domain. ; PDB: 3E6J_A 1W8A_A 2V9S_C 2V9T_B 3TWI_D 3ZYN_A 3ZYO_A 1OOK_G 1QYY_G 1SQ0_B ....

>KOG4658|consensus

Probab=97.80  E-value=8.6e-06  Score=92.58  Aligned_cols=146  Identities=19%  Similarity=0.146  Sum_probs=101.2

Q ss_pred             CCeEEcCCCCCCcCCCCC-CccCcEEecCCCc--ceeecCCCccCCCCCCcEEeCCCC-cceecCCCcCCCcccCCcCCC
Q psy15407         96 GTRVDCSQRGLKEIPKDI-PLYTTELILNDNE--IGKIKSDGLFGRLPNLIKLDLRRN-QVTGIEDNAFEGENDQGCLGD  171 (604)
Q Consensus        96 ~~~l~cs~~~L~~iP~~l-~~~~~~L~L~~N~--i~~i~~~~~f~~l~~L~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~l  171 (604)
                      .+.+..-++.+..++... ...+++|-+..|.  +..++. ++|..|+.|+.|||+.| .+..++ ...+.|.+|++|+|
T Consensus       525 ~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~-~ff~~m~~LrVLDLs~~~~l~~LP-~~I~~Li~LryL~L  602 (889)
T KOG4658|consen  525 VRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISG-EFFRSLPLLRVLDLSGNSSLSKLP-SSIGELVHLRYLDL  602 (889)
T ss_pred             eeEEEEeccchhhccCCCCCCccceEEEeecchhhhhcCH-HHHhhCcceEEEECCCCCccCcCC-hHHhhhhhhhcccc
Confidence            467778888888888765 3368899999997  777765 56999999999999987 455654 45677899999988


Q ss_pred             CCCCCCccccccEEEccCCccccccccccceeeeeeccccCCccccceeecCCCCceeeccCCCCCCCCCCCeEEecCCc
Q psy15407        172 NYCPPKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNK  251 (604)
Q Consensus       172 ~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~i~~l~~~~f~~l~~L~~L~Ls~N~  251 (604)
                      +......+                            +...+.+. .|.+|+|..+......+..+..|.+|++|.|....
T Consensus       603 ~~t~I~~L----------------------------P~~l~~Lk-~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~  653 (889)
T KOG4658|consen  603 SDTGISHL----------------------------PSGLGNLK-KLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA  653 (889)
T ss_pred             cCCCcccc----------------------------chHHHHHH-hhheeccccccccccccchhhhcccccEEEeeccc
Confidence            87443211                            11111122 78899999888666667778889999999997765


Q ss_pred             c--eeeeccccCCCCcccEEEcc
Q psy15407        252 L--QCIDRDALAGLKSLRIISLH  272 (604)
Q Consensus       252 l--~~i~~~~f~~l~~L~~L~Ls  272 (604)
                      .  ....-..+..|.+|+.|...
T Consensus       654 ~~~~~~~l~el~~Le~L~~ls~~  676 (889)
T KOG4658|consen  654 LSNDKLLLKELENLEHLENLSIT  676 (889)
T ss_pred             cccchhhHHhhhcccchhhheee
Confidence            2  22222333455566655553

>smart00013 LRRNT Leucine rich repeat N-terminal domain

Probab=97.77  E-value=3.1e-05  Score=49.22  Aligned_cols=32  Identities=63%  Similarity=1.220  Sum_probs=29.3

Q ss_pred             CCCCCCeeCCCeEEcCCCCCCcCCCCCCccCc
Q psy15407         87 ACPSGCSCDGTRVDCSQRGLKEIPKDIPLYTT  118 (604)
Q Consensus        87 ~CP~~C~C~~~~l~cs~~~L~~iP~~l~~~~~  118 (604)
                      .||..|+|....|+|++.+|++||.+||.+++
T Consensus         1 ~CP~~C~C~~~~V~C~~~~L~~vP~~iP~~t~   32 (33)
T smart00013        1 ACPAPCNCSGTAVDCSGRGLTEVPLDLPPDTT   32 (33)
T ss_pred             CcCCCCEECCCEeEeCCCCcCccCCCCCcccc
Confidence            38999999999999999999999999987654

>PF07645 EGF_CA: Calcium-binding EGF domain; InterPro: IPR001881 A sequence of about forty amino-acid residues found in epidermal growth factor (EGF) has been shown [, , , , , ] to be present in a large number of membrane-bound and extracellular, mostly animal, proteins

Probab=97.76  E-value=2.3e-05  Score=53.06  Aligned_cols=32  Identities=34%  Similarity=1.025  Sum_probs=26.6

Q ss_pred             cCCCCCC--CCCCCCCEEeeCCCCeEeeeCCCCc
Q psy15407        513 NVDDCVN--HMCQNGGTCVDGINDYTCKCEGDFV  544 (604)
Q Consensus       513 ~~~~C~~--~~C~~~~~C~~~~~~y~C~C~~G~~  544 (604)
                      |+|||..  +.|..++.|+++.|+|+|.|++||.
T Consensus         1 DidEC~~~~~~C~~~~~C~N~~Gsy~C~C~~Gy~   34 (42)
T PF07645_consen    1 DIDECAEGPHNCPENGTCVNTEGSYSCSCPPGYE   34 (42)
T ss_dssp             ESSTTTTTSSSSSTTSEEEEETTEEEEEESTTEE
T ss_pred             CccccCCCCCcCCCCCEEEcCCCCEEeeCCCCcE
Confidence            4678864  4688888999999999999999997

Many of these proteins require calcium for their biological function and a calcium-binding site has been found at the N terminus of some EGF-like domains []. Calcium-binding may be crucial for numerous protein-protein interactions. For human coagulation factor IX it has been shown [] that the calcium-ligands form a pentagonal bipyramid. The first, third and fourth conserved negatively charged or polar residues are side chain ligands. The latter is possibly hydroxylated (see aspartic acid and asparagine hydroxylation site) []. A conserved aromatic residue, as well as the second conserved negative residue, are thought to be involved in stabilising the calcium-binding site. As in non-calcium binding EGF-like domains, there are six conserved cysteines and the structure of both types is very similar as calcium-binding induces only strictly local structural changes []. +------------------+ +---------+ | | | | nxnnC-x(3,14)-C-x(3,7)-CxxbxxxxaxC-x(1,6)-C-x(8,13)-Cx | | +------------------+ 'n': negatively charged or polar residue [DEQN] 'b': possibly beta-hydroxylated residue [DN] 'a': aromatic amino acid 'C': cysteine, involved in disulphide bond 'x': any amino acid. ; GO: 0005509 calcium ion binding; PDB: 2VJ3_A 1TOZ_A 1LMJ_A 1UZQ_A 1UZK_A 1UZJ_B 1UZP_A 1EMO_A 1EMN_A 2RR0_A ....

>PF07645 EGF_CA: Calcium-binding EGF domain; InterPro: IPR001881 A sequence of about forty amino-acid residues found in epidermal growth factor (EGF) has been shown [, , , , , ] to be present in a large number of membrane-bound and extracellular, mostly animal, proteins

Probab=97.74  E-value=2.3e-05  Score=53.09  Aligned_cols=34  Identities=26%  Similarity=0.790  Sum_probs=29.2

Q ss_pred             CCCcCCCCCCCCCCCCceeecCCCeEEecCCCCc
Q psy15407        473 KTPFCAGEYNPCRNGARCLDHFSHYTCECTPGFS  506 (604)
Q Consensus       473 ~~~~C~~~~~~C~~~~~C~~~~~~~~C~C~~g~~  506 (604)
                      +++||....+.|..++.|+++.|+|+|.|++||.
T Consensus         1 DidEC~~~~~~C~~~~~C~N~~Gsy~C~C~~Gy~   34 (42)
T PF07645_consen    1 DIDECAEGPHNCPENGTCVNTEGSYSCSCPPGYE   34 (42)
T ss_dssp             ESSTTTTTSSSSSTTSEEEEETTEEEEEESTTEE
T ss_pred             CccccCCCCCcCCCCCEEEcCCCCEEeeCCCCcE
Confidence            4678887778898888999999999999999997

Many of these proteins require calcium for their biological function and a calcium-binding site has been found at the N terminus of some EGF-like domains []. Calcium-binding may be crucial for numerous protein-protein interactions. For human coagulation factor IX it has been shown [] that the calcium-ligands form a pentagonal bipyramid. The first, third and fourth conserved negatively charged or polar residues are side chain ligands. The latter is possibly hydroxylated (see aspartic acid and asparagine hydroxylation site) []. A conserved aromatic residue, as well as the second conserved negative residue, are thought to be involved in stabilising the calcium-binding site. As in non-calcium binding EGF-like domains, there are six conserved cysteines and the structure of both types is very similar as calcium-binding induces only strictly local structural changes []. +------------------+ +---------+ | | | | nxnnC-x(3,14)-C-x(3,7)-CxxbxxxxaxC-x(1,6)-C-x(8,13)-Cx | | +------------------+ 'n': negatively charged or polar residue [DEQN] 'b': possibly beta-hydroxylated residue [DN] 'a': aromatic amino acid 'C': cysteine, involved in disulphide bond 'x': any amino acid. ; GO: 0005509 calcium ion binding; PDB: 2VJ3_A 1TOZ_A 1LMJ_A 1UZQ_A 1UZK_A 1UZJ_B 1UZP_A 1EMO_A 1EMN_A 2RR0_A ....

>PF00008 EGF: EGF-like domain This is a sub-family of the Pfam entry This is a sub-family of the Pfam entry; InterPro: IPR006209 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins

Probab=97.74  E-value=1.8e-05  Score=49.95  Aligned_cols=26  Identities=46%  Similarity=1.261  Sum_probs=11.3

Q ss_pred             CCCCCCcEEEeCC-CCeEEecCCCCCC
Q psy15407        442 HKCENNATCVDLI-QAYECRCAPGFQG  467 (604)
Q Consensus       442 ~~C~~~~~C~~~~-~~~~C~C~~g~~g  467 (604)
                      .||.++|+|++.. ++|.|.|++||+|
T Consensus         4 ~~C~n~g~C~~~~~~~y~C~C~~G~~G   30 (32)
T PF00008_consen    4 NPCQNGGTCIDLPGGGYTCECPPGYTG   30 (32)
T ss_dssp             TSSTTTEEEEEESTSEEEEEEBTTEES
T ss_pred             CcCCCCeEEEeCCCCCEEeECCCCCcc
Confidence            3444444444443 4444444444444

The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length.; GO: 0005515 protein binding; PDB: 1WHE_A 1CCF_A 1APO_A 1WHF_A 2VJ3_A 1TOZ_A 4D90_B 3CFW_A 1EDM_B 1IXA_A ....

>cd00054 EGF_CA Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins

Probab=97.63  E-value=8e-05  Score=49.11  Aligned_cols=36  Identities=44%  Similarity=1.208  Sum_probs=29.0

Q ss_pred             CCCCCC-CCCCCCCEEeeCCCCeEeeeCCCCccCCCC
Q psy15407        514 VDDCVN-HMCQNGGTCVDGINDYTCKCEGDFVGKFCE  549 (604)
Q Consensus       514 ~~~C~~-~~C~~~~~C~~~~~~y~C~C~~G~~G~~C~  549 (604)
                      +++|.. .+|.+++.|++..++|.|.|++||.|..|+
T Consensus         2 ~~~C~~~~~C~~~~~C~~~~~~~~C~C~~g~~g~~C~   38 (38)
T cd00054           2 IDECASGNPCQNGGTCVNTVGSYRCSCPPGYTGRNCE   38 (38)
T ss_pred             cccCCCCCCcCCCCEeECCCCCeEeECCCCCcCCcCC
Confidence            456765 678888889988888999999999887764

Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements.

>smart00179 EGF_CA Calcium-binding EGF-like domain

Probab=97.63  E-value=8.8e-05  Score=49.33  Aligned_cols=35  Identities=46%  Similarity=1.241  Sum_probs=20.9

Q ss_pred             CCcCCC-CCCCCCcEEEeCCCCeEEecCCCCC-CCCc
Q psy15407        436 IDDCLS-HKCENNATCVDLIQAYECRCAPGFQ-GEFC  470 (604)
Q Consensus       436 ~~~C~~-~~C~~~~~C~~~~~~~~C~C~~g~~-g~~C  470 (604)
                      +++|.. .+|.++++|++..++|.|.|++||. |..|
T Consensus         2 ~~~C~~~~~C~~~~~C~~~~g~~~C~C~~g~~~g~~C   38 (39)
T smart00179        2 IDECASGNPCQNGGTCVNTVGSYRCECPPGYTDGRNC   38 (39)
T ss_pred             cccCcCCCCcCCCCEeECCCCCeEeECCCCCccCCcC
Confidence            345554 4566666666666666666666666 5544

>KOG2739|consensus

Probab=97.54  E-value=2.7e-05  Score=73.59  Aligned_cols=56  Identities=23%  Similarity=0.321  Sum_probs=31.0

Q ss_pred             CCCCCeEEecCCcceeeec-cccCCCCcccEEEccCCccccCCc---ccccCcccceeee
Q psy15407        239 LSKLSQLILSYNKLQCIDR-DALAGLKSLRIISLHGNDISMIPE---GAFADLHAITHLA  294 (604)
Q Consensus       239 l~~L~~L~Ls~N~l~~i~~-~~f~~l~~L~~L~Ls~N~l~~i~~---~~f~~l~~L~~L~  294 (604)
                      +++|++|+|+.|+|+.+.. ..+..+.+|..|+|.++..+.+..   .+|.-|++|+.|+
T Consensus        90 ~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD  149 (260)
T KOG2739|consen   90 APNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLD  149 (260)
T ss_pred             CCceeEEeecCCccccccccchhhhhcchhhhhcccCCccccccHHHHHHHHhhhhcccc
Confidence            4666666666666654321 223445556666776666555432   3455566665554

>KOG2982|consensus

Probab=97.47  E-value=3.9e-05  Score=73.43  Aligned_cols=196  Identities=16%  Similarity=0.047  Sum_probs=107.0

Q ss_pred             CeEEcCCCCCCcCC---CCC--CccCcEEecCCCcceeecCCCcc-CCCCCCcEEeCCCCcceecCC-CcCCCcccCCcC
Q psy15407         97 TRVDCSQRGLKEIP---KDI--PLYTTELILNDNEIGKIKSDGLF-GRLPNLIKLDLRRNQVTGIED-NAFEGENDQGCL  169 (604)
Q Consensus        97 ~~l~cs~~~L~~iP---~~l--~~~~~~L~L~~N~i~~i~~~~~f-~~l~~L~~L~Ls~N~i~~i~~-~~f~~l~~L~~L  169 (604)
                      +.+|+..|.|+.-.   .-+  .+.++.|+|+.|.+...-..  + ..+.+|+.|-|.+..+..-.. ..+..++.++.|
T Consensus        74 ~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~--lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtel  151 (418)
T KOG2982|consen   74 KELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKS--LPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTEL  151 (418)
T ss_pred             hhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCcccc--CcccccceEEEEEcCCCCChhhhhhhhhcchhhhhh
Confidence            56777777766321   111  23457777777777432111  2 345677777777766543222 234456666666


Q ss_pred             CCCCCCCCccccc--cEEEccCCccccccccccceeeeeeccccCCccccceeecCCCCceeecc-CCCCCCCCCCCeEE
Q psy15407        170 GDNYCPPKCTCTV--RVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLS-NFTFSPLSKLSQLI  246 (604)
Q Consensus       170 ~l~~~~~~~~~~l--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~i~~l~-~~~f~~l~~L~~L~  246 (604)
                      .++.|....+..-  -.-........+...............+...+| ++..+-+..+.|..+. ...+..++.+.-|+
T Consensus       152 HmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fp-nv~sv~v~e~PlK~~s~ek~se~~p~~~~Ln  230 (418)
T KOG2982|consen  152 HMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFP-NVNSVFVCEGPLKTESSEKGSEPFPSLSCLN  230 (418)
T ss_pred             hhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcc-cchheeeecCcccchhhcccCCCCCcchhhh
Confidence            6665531100000  000001111122222222221111112222223 6666777788776654 34677788888999


Q ss_pred             ecCCcceeeec-cccCCCCcccEEEccCCccccCCcc------cccCcccceeeec
Q psy15407        247 LSYNKLQCIDR-DALAGLKSLRIISLHGNDISMIPEG------AFADLHAITHLAI  295 (604)
Q Consensus       247 Ls~N~l~~i~~-~~f~~l~~L~~L~Ls~N~l~~i~~~------~f~~l~~L~~L~L  295 (604)
                      |+.|+|.+... +++.++++|+-|.+++|.|..--..      .++.|++++.|+=
T Consensus       231 L~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNG  286 (418)
T KOG2982|consen  231 LGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNG  286 (418)
T ss_pred             hcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEecC
Confidence            99999987643 7788899999999999988732211      3466777776653

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.47  E-value=0.00017  Score=73.86  Aligned_cols=52  Identities=15%  Similarity=0.252  Sum_probs=33.9

Q ss_pred             ccCcEEecCCCcceeecCCCccCCCCCCcEEeCCC-CcceecCCCcCCCcccCCcCCCCCC
Q psy15407        115 LYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRR-NQVTGIEDNAFEGENDQGCLGDNYC  174 (604)
Q Consensus       115 ~~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~-N~i~~i~~~~f~~l~~L~~L~l~~~  174 (604)
                      ..++.|+++++.|+.+|.   |  ..+|+.|.|++ ++++.++. .+  ..+|+.|.+++|
T Consensus        52 ~~l~~L~Is~c~L~sLP~---L--P~sLtsL~Lsnc~nLtsLP~-~L--P~nLe~L~Ls~C  104 (426)
T PRK15386         52 RASGRLYIKDCDIESLPV---L--PNELTEITIENCNNLTTLPG-SI--PEGLEKLTVCHC  104 (426)
T ss_pred             cCCCEEEeCCCCCcccCC---C--CCCCcEEEccCCCCcccCCc-hh--hhhhhheEccCc
Confidence            345788898888888862   2  24688888887 55655543 22  245666666654

>KOG1909|consensus

Probab=97.43  E-value=1.3e-05  Score=78.30  Aligned_cols=67  Identities=21%  Similarity=0.197  Sum_probs=29.4

Q ss_pred             CCCCCCCCCeEEecCCcceeee----ccccCCCCcccEEEccCCccccCCcccc-----cCcccceeeeccCCCcc
Q psy15407        235 TFSPLSKLSQLILSYNKLQCID----RDALAGLKSLRIISLHGNDISMIPEGAF-----ADLHAITHLAIGGNPLY  301 (604)
Q Consensus       235 ~f~~l~~L~~L~Ls~N~l~~i~----~~~f~~l~~L~~L~Ls~N~l~~i~~~~f-----~~l~~L~~L~L~~Npl~  301 (604)
                      .|...++|+.|||..|-++.--    ..++..+++|+.|+|++..|+.--..+|     ...++|+.|.|.+|-+.
T Consensus       208 al~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt  283 (382)
T KOG1909|consen  208 ALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEIT  283 (382)
T ss_pred             HHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhH
Confidence            3444555555555555444311    2334444555555555554442211111     12344555555555443

>TIGR00864 PCC polycystin cation channel protein

Probab=97.36  E-value=0.00012  Score=89.32  Aligned_cols=58  Identities=16%  Similarity=0.183  Sum_probs=48.5

Q ss_pred             ccCceeeecchhhHHHHHHhCCccccCCCCcCCCCCcccccCcccccCCCCceeecCCC
Q psy15407          8 GINDYTCKCEGDFVGKFCEIAPFVAMMYPQTSPCQHHDCKNGICFQPQGSNDYLCKCAP   66 (604)
Q Consensus         8 ~~np~~C~C~l~w~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~c~~~~   66 (604)
                      ..|||.|||+|+||.+|++++.+.. ..+....|..|..++|+.|.++..++|.|....
T Consensus        27 sgNPw~CDC~L~WL~~WL~~~~v~v-~~~~~i~CasP~~LrG~~L~~l~~~d~~C~~~y   84 (2740)
T TIGR00864        27 SGNPFECDCGLARLPRWAEEKGVKV-RQPEAALCAGPGALAGQPLLGIPLLDSGCDEEY   84 (2740)
T ss_pred             eCCccccccccHHHHHHHHhcCccc-cCCcccCCCCChHHCCCCcccCCcccCCCCCcc
Confidence            5799999999999999999885432 224568899999999999999999998887443

Note: this model has been restricted to the amino half because for technical reasons.

>PF06247 Plasmod_Pvs28: Plasmodium ookinete surface protein Pvs28; InterPro: IPR010423 This family consists of several ookinete surface protein (Pvs28) from several species of Plasmodium

Probab=97.30  E-value=0.00014  Score=64.57  Aligned_cols=124  Identities=27%  Similarity=0.717  Sum_probs=72.4

Q ss_pred             CCceEeeCCCCCc---CCCCCcCCCcCC-----CCCCCCCcEEEeCC-----CCeEEecCCCCCC--CCcccCCCcCCCC
Q psy15407        416 EGRFNCECAPGYT---GDRCEINIDDCL-----SHKCENNATCVDLI-----QAYECRCAPGFQG--EFCQTKTPFCAGE  480 (604)
Q Consensus       416 ~~~~~C~C~~g~~---g~~C~~~~~~C~-----~~~C~~~~~C~~~~-----~~~~C~C~~g~~g--~~C~~~~~~C~~~  480 (604)
                      ...|.|.|.+||.   -..|| ...+|.     ..+|...++|++..     ..|.|.|.+||.-  ..|.  ...|.. 
T Consensus        17 SNHfEC~Cnegfvl~~EntCE-~kv~C~~~e~~~K~Cgdya~C~~~~~~~~~~~~~C~C~~gY~~~~~vCv--p~~C~~-   92 (197)
T PF06247_consen   17 SNHFECKCNEGFVLKNENTCE-EKVECDKLENVNKPCGDYAKCINQANKGEERAYKCDCINGYILKQGVCV--PNKCNN-   92 (197)
T ss_dssp             SSEEEEEESTTEEEEETTEEE-E----SG-GGTTSEEETTEEEEE-SSTTSSTSEEEEE-TTEEESSSSEE--EGGGSS-
T ss_pred             cCceEEEcCCCcEEccccccc-cceecCcccccCccccchhhhhcCCCcccceeEEEecccCceeeCCeEc--hhhcCc-
Confidence            5678888888886   34566 333454     34688889998765     4699999999962  2342  233433 


Q ss_pred             CCCCCCCCceeecC---CCeEEecCCCCc---CCcCccc-CCCCCCCCCCCCCEEeeCCCCeEeeeCCCCccC
Q psy15407        481 YNPCRNGARCLDHF---SHYTCECTPGFS---GVNCTVN-VDDCVNHMCQNGGTCVDGINDYTCKCEGDFVGK  546 (604)
Q Consensus       481 ~~~C~~~~~C~~~~---~~~~C~C~~g~~---g~~c~~~-~~~C~~~~C~~~~~C~~~~~~y~C~C~~G~~G~  546 (604)
                       ..|. .|.|+-.+   ....|.|.-|+.   +..|..+ ..+|.- .|..+-+|....+-|+|.|.+||.+.
T Consensus        93 -~~Cg-~GKCI~d~~~~~~~~CSC~IGkV~~dn~kCtk~G~T~C~L-KCk~nE~CK~~~~~Y~C~~~~~~~~~  162 (197)
T PF06247_consen   93 -KDCG-SGKCILDPDNPNNPTCSCNIGKVPDDNKKCTKTGETKCSL-KCKENEECKLVDGYYKCVCKEGFPGD  162 (197)
T ss_dssp             ----T-TEEEEEEEGGGSEEEEEE-TEEETTTTTESEEEE---------TTTEEEEEETTEEEEEE-TT-EEE
T ss_pred             -eecC-CCeEEecCCCCCCceeEeeeceEeccCCcccCCCccceee-ecCCCcceeeeCcEEEeecCCCCCCC
Confidence             3566 56886432   345899999987   3334321 123332 47788899999999999999999755

Pvs25 and Pvs28 are expressed on the surface of ookinetes. These proteins are potential candidates for vaccine and induce antibodies that block the infectivity of Plasmodium vivax in immunised animals [].; GO: 0009986 cell surface, 0016020 membrane; PDB: 1Z3G_B 1Z1Y_B 1Z27_A.

>cd00054 EGF_CA Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins

Probab=97.24  E-value=0.00049  Score=45.20  Aligned_cols=34  Identities=44%  Similarity=1.233  Sum_probs=19.1

Q ss_pred             CcCCC-CCCCCCcEEEeCCCCeEEecCCCCCCCCc
Q psy15407        437 DDCLS-HKCENNATCVDLIQAYECRCAPGFQGEFC  470 (604)
Q Consensus       437 ~~C~~-~~C~~~~~C~~~~~~~~C~C~~g~~g~~C  470 (604)
                      ++|.. .+|.+++.|++..++|.|.|.+||.|..|
T Consensus         3 ~~C~~~~~C~~~~~C~~~~~~~~C~C~~g~~g~~C   37 (38)
T cd00054           3 DECASGNPCQNGGTCVNTVGSYRCSCPPGYTGRNC   37 (38)
T ss_pred             ccCCCCCCcCCCCEeECCCCCeEeECCCCCcCCcC
Confidence            44444 45555556666556666666666665544

Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements.

>cd00053 EGF Epidermal growth factor domain, found in epidermal growth factor (EGF) presents in a large number of proteins, mostly animal; the list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied; the functional significance of EGF-like domains in what appear to be unrelated proteins is not yet clear; a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase); the domain includes six cysteine residues which have been shown to be involved in disulfide bonds; the main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet; Subdomains between the conserved cysteines vary in length; the region between the 5th and 6th cysteine contains two conserved glycines of which at least one is present in most EGF-like domains; a subset of these bind calcium

Probab=97.18  E-value=0.00058  Score=44.14  Aligned_cols=30  Identities=40%  Similarity=1.032  Sum_probs=23.1

Q ss_pred             CCCCCCCCEEeeCCCCeEeeeCCCCccC-CC
Q psy15407        519 NHMCQNGGTCVDGINDYTCKCEGDFVGK-FC  548 (604)
Q Consensus       519 ~~~C~~~~~C~~~~~~y~C~C~~G~~G~-~C  548 (604)
                      ..+|.+++.|++..++|+|.|+.||.|. .|
T Consensus         5 ~~~C~~~~~C~~~~~~~~C~C~~g~~g~~~C   35 (36)
T cd00053           5 SNPCSNGGTCVNTPGSYRCVCPPGYTGDRSC   35 (36)
T ss_pred             CCCCCCCCEEecCCCCeEeECCCCCcccCCc
Confidence            4567777888888788888888888877 54

>smart00181 EGF Epidermal growth factor-like domain

Probab=97.14  E-value=0.00067  Score=43.80  Aligned_cols=28  Identities=43%  Similarity=1.063  Sum_probs=22.4

Q ss_pred             CCCCCCCEEeeCCCCeEeeeCCCCcc-CCC
Q psy15407        520 HMCQNGGTCVDGINDYTCKCEGDFVG-KFC  548 (604)
Q Consensus       520 ~~C~~~~~C~~~~~~y~C~C~~G~~G-~~C  548 (604)
                      .+|.++ .|++..++|+|.|++||.| ..|
T Consensus         6 ~~C~~~-~C~~~~~~~~C~C~~g~~g~~~C   34 (35)
T smart00181        6 GPCSNG-TCINTPGSYTCSCPPGYTGDKRC   34 (35)
T ss_pred             CCCCCC-EEECCCCCeEeECCCCCccCCcc
Confidence            477777 8888888888888888888 655

>KOG2123|consensus

Probab=97.10  E-value=1.5e-05  Score=75.43  Aligned_cols=58  Identities=29%  Similarity=0.350  Sum_probs=30.7

Q ss_pred             ceeecCCCCceeeccCCCCCCCCCCCeEEecCCcceeeec-cccCCCCcccEEEccCCccc
Q psy15407        218 TMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDR-DALAGLKSLRIISLHGNDIS  277 (604)
Q Consensus       218 L~~L~Ls~N~i~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~-~~f~~l~~L~~L~Ls~N~l~  277 (604)
                      |+.|.||-|+|+.+.+  |...++|++|+|..|.|..|.. .-+.+|++|+.|.|..|.-.
T Consensus        43 lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc  101 (388)
T KOG2123|consen   43 LEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCC  101 (388)
T ss_pred             ceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCcc
Confidence            3344444444444432  4445556666666666555533 23456666677776666543

>PF12661 hEGF: Human growth factor-like EGF; PDB: 2YGQ_A 2E26_A 3A7Q_A 2YGP_A 2YGO_A 1HRE_A 1HAE_A 1HAF_A 1HRF_A

Probab=97.00  E-value=0.00028  Score=34.28  Aligned_cols=13  Identities=38%  Similarity=1.288  Sum_probs=11.0

Q ss_pred             eeecCCCCcCCCC
Q psy15407        584 LCKCAPGYSGKES  596 (604)
Q Consensus       584 ~C~C~~G~~G~~C  596 (604)
                      +|+|++||+|++|
T Consensus         1 ~C~C~~G~~G~~C   13 (13)
T PF12661_consen    1 TCQCPPGWTGPNC   13 (13)
T ss_dssp             EEEE-TTEETTTT
T ss_pred             CccCcCCCcCCCC
Confidence            4999999999988

>smart00181 EGF Epidermal growth factor-like domain

Probab=96.97  E-value=0.0011  Score=42.80  Aligned_cols=29  Identities=41%  Similarity=1.082  Sum_probs=23.9

Q ss_pred             CCCCCCceeCCCCCCCeeeecCCCCcC-CCCC
Q psy15407        567 HDCKNGICFQPQGSNDYLCKCAPGYSG-KESL  597 (604)
Q Consensus       567 ~~C~~g~C~~~~g~~~~~C~C~~G~~G-~~C~  597 (604)
                      ..|.++.|++..  ++|+|.|++||.| +.|+
T Consensus         6 ~~C~~~~C~~~~--~~~~C~C~~g~~g~~~C~   35 (35)
T smart00181        6 GPCSNGTCINTP--GSYTCSCPPGYTGDKRCE   35 (35)
T ss_pred             CCCCCCEEECCC--CCeEeECCCCCccCCccC
Confidence            456665799887  8899999999999 8875

>PF12947 EGF_3: EGF domain; InterPro: IPR024731 This entry represents an EGF domain found in the the C terminus of malarial parasite merozoite surface protein 1 [], as well as other proteins

Probab=96.89  E-value=0.00057  Score=44.16  Aligned_cols=26  Identities=31%  Similarity=0.822  Sum_probs=14.2

Q ss_pred             CCCCCCEEeeCCCCeEeeeCCCCccC
Q psy15407        521 MCQNGGTCVDGINDYTCKCEGDFVGK  546 (604)
Q Consensus       521 ~C~~~~~C~~~~~~y~C~C~~G~~G~  546 (604)
                      .|+.+++|++..++|+|.|++||.|+
T Consensus         7 ~C~~nA~C~~~~~~~~C~C~~Gy~Gd   32 (36)
T PF12947_consen    7 GCHPNATCTNTGGSYTCTCKPGYEGD   32 (36)
T ss_dssp             GS-TTCEEEE-TTSEEEEE-CEEECC
T ss_pred             CCCCCcEeecCCCCEEeECCCCCccC
Confidence            45566666666666666666666654

; PDB: 2NPR_A 1N1I_C 1B9W_A 1YO8_A 2RHP_A.

>PF12947 EGF_3: EGF domain; InterPro: IPR024731 This entry represents an EGF domain found in the the C terminus of malarial parasite merozoite surface protein 1 [], as well as other proteins

Probab=96.83  E-value=0.00074  Score=43.63  Aligned_cols=32  Identities=34%  Similarity=0.887  Sum_probs=25.0

Q ss_pred             CCCCCCCCCCCCceeecCCCeEEecCCCCcCC
Q psy15407        477 CAGEYNPCRNGARCLDHFSHYTCECTPGFSGV  508 (604)
Q Consensus       477 C~~~~~~C~~~~~C~~~~~~~~C~C~~g~~g~  508 (604)
                      |....+.|..++.|+++.++|.|.|.+||.|+
T Consensus         1 C~~~~~~C~~nA~C~~~~~~~~C~C~~Gy~Gd   32 (36)
T PF12947_consen    1 CLENNGGCHPNATCTNTGGSYTCTCKPGYEGD   32 (36)
T ss_dssp             TTTGGGGS-TTCEEEE-TTSEEEEE-CEEECC
T ss_pred             CCCCCCCCCCCcEeecCCCCEEeECCCCCccC
Confidence            34456789999999999999999999999984

; PDB: 2NPR_A 1N1I_C 1B9W_A 1YO8_A 2RHP_A.

>KOG2739|consensus

Probab=96.82  E-value=0.00067  Score=64.30  Aligned_cols=82  Identities=22%  Similarity=0.267  Sum_probs=57.9

Q ss_pred             cceeecCCCCceeeccCCCCCCCCCCCeEEecCC--cceeeeccccCCCCcccEEEccCCccccCCc-ccccCcccceee
Q psy15407        217 STMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYN--KLQCIDRDALAGLKSLRIISLHGNDISMIPE-GAFADLHAITHL  293 (604)
Q Consensus       217 ~L~~L~Ls~N~i~~l~~~~f~~l~~L~~L~Ls~N--~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~-~~f~~l~~L~~L  293 (604)
                      .|+.|.+.+-.++.+..  |-.|++|++|.||.|  ++..--.-....+++|++|+|++|+|+.+.. .-+..+.+|..|
T Consensus        44 ~le~ls~~n~gltt~~~--~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~L  121 (260)
T KOG2739|consen   44 ELELLSVINVGLTTLTN--FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSL  121 (260)
T ss_pred             chhhhhhhccceeeccc--CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhh
Confidence            56666777777776653  667899999999999  5543222223445999999999999884321 125667788888


Q ss_pred             eccCCCc
Q psy15407        294 AIGGNPL  300 (604)
Q Consensus       294 ~L~~Npl  300 (604)
                      ++..++.
T Consensus       122 dl~n~~~  128 (260)
T KOG2739|consen  122 DLFNCSV  128 (260)
T ss_pred             hcccCCc
Confidence            9888754

>KOG3512|consensus

Probab=96.77  E-value=0.0093  Score=60.44  Aligned_cols=103  Identities=18%  Similarity=0.359  Sum_probs=56.1

Q ss_pred             eEEe-cCCCCcCCcCc--ccCCCCCCCCCCC----CCEEeeCCCCeEeeeCCCCccCCCCcCcccccCCC-CCCCCCCCC
Q psy15407        497 YTCE-CTPGFSGVNCT--VNVDDCVNHMCQN----GGTCVDGINDYTCKCEGDFVGKFCEIAPFVAMMYP-QTSPCQHHD  568 (604)
Q Consensus       497 ~~C~-C~~g~~g~~c~--~~~~~C~~~~C~~----~~~C~~~~~~y~C~C~~G~~G~~C~~~~~~~~~~~-~~~~C~~~~  568 (604)
                      -+|. |.+||+.+.-.  .+...|..-.|++    |.+|..+.|  +|.|.+|-+|.+|..+........ ...+|...+
T Consensus       371 rhChyCreGyyRd~s~pl~hrkaCk~CdChpVGs~gktCNq~tG--qCpCkeGvtG~tCnrCa~gyqqsrs~vapcik~p  448 (592)
T KOG3512|consen  371 RHCHYCREGYYRDGSKPLTHRKACKACDCHPVGSAGKTCNQTTG--QCPCKEGVTGLTCNRCAPGYQQSRSPVAPCIKIP  448 (592)
T ss_pred             cccccccCccccCCCCCCchhhhhhhcCCcccccccccccccCC--cccCCCCCcccccccccchhhcccCCCcCceecC
Confidence            3463 78888643322  1233344434443    346665656  899999999999887643221111 122332211


Q ss_pred             CCC-CceeCCCCCCCeeeecCCCCcCCCCCCCcc
Q psy15407        569 CKN-GICFQPQGSNDYLCKCAPGYSGKESLLQQT  601 (604)
Q Consensus       569 C~~-g~C~~~~g~~~~~C~C~~G~~G~~C~~~~~  601 (604)
                      =.. -.+.+.....++.+.|+.++.|.+++.+..
T Consensus       449 ~~~~~~~~s~ve~qd~~s~Ck~~~~~~r~n~kkf  482 (592)
T KOG3512|consen  449 TDAPTLGSSGVEPQDQCSKCKASPGGKRLNQKKF  482 (592)
T ss_pred             CCCccccCCCCcchhccccCCCCCcceecccccc
Confidence            101 112222222567789999999999987654

>KOG2123|consensus

Probab=96.76  E-value=6.9e-05  Score=71.07  Aligned_cols=80  Identities=21%  Similarity=0.227  Sum_probs=68.8

Q ss_pred             cceeecCCCCceeeccCCCCCCCCCCCeEEecCCcceeeeccccCCCCcccEEEccCCccccCCc-ccccCcccceeeec
Q psy15407        217 STMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPE-GAFADLHAITHLAI  295 (604)
Q Consensus       217 ~L~~L~Ls~N~i~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~-~~f~~l~~L~~L~L  295 (604)
                      +.++|++-+..|+.|.  ....++.|+.|.||-|+|+++.  .|...++|++|.|..|.|..|.+ .-+.+|++|+.|.|
T Consensus        20 ~vkKLNcwg~~L~DIs--ic~kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL   95 (388)
T KOG2123|consen   20 NVKKLNCWGCGLDDIS--ICEKMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWL   95 (388)
T ss_pred             HhhhhcccCCCccHHH--HHHhcccceeEEeeccccccch--hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhh
Confidence            5667888888888775  4567999999999999999995  47888999999999999999876 33578999999999


Q ss_pred             cCCCc
Q psy15407        296 GGNPL  300 (604)
Q Consensus       296 ~~Npl  300 (604)
                      ..||-
T Consensus        96 ~ENPC  100 (388)
T KOG2123|consen   96 DENPC  100 (388)
T ss_pred             ccCCc
Confidence            99994

>cd00053 EGF Epidermal growth factor domain, found in epidermal growth factor (EGF) presents in a large number of proteins, mostly animal; the list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied; the functional significance of EGF-like domains in what appear to be unrelated proteins is not yet clear; a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase); the domain includes six cysteine residues which have been shown to be involved in disulfide bonds; the main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet; Subdomains between the conserved cysteines vary in length; the region between the 5th and 6th cysteine contains two conserved glycines of which at least one is present in most EGF-like domains; a subset of these bind calcium

Probab=96.69  E-value=0.0029  Score=40.78  Aligned_cols=27  Identities=41%  Similarity=1.121  Sum_probs=14.8

Q ss_pred             CCCCCCcEEEeCCCCeEEecCCCCCCC
Q psy15407        442 HKCENNATCVDLIQAYECRCAPGFQGE  468 (604)
Q Consensus       442 ~~C~~~~~C~~~~~~~~C~C~~g~~g~  468 (604)
                      .+|.+++.|++..+.|.|.|+.||.|.
T Consensus         6 ~~C~~~~~C~~~~~~~~C~C~~g~~g~   32 (36)
T cd00053           6 NPCSNGGTCVNTPGSYRCVCPPGYTGD   32 (36)
T ss_pred             CCCCCCCEEecCCCCeEeECCCCCccc
Confidence            345555555555555555555555554

>PF07974 EGF_2: EGF-like domain; InterPro: IPR013111 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins

Probab=96.54  E-value=0.0036  Score=39.23  Aligned_cols=26  Identities=35%  Similarity=0.997  Sum_probs=18.8

Q ss_pred             CCCCCCEEeeCCCCeEeeeCCCCccCCC
Q psy15407        521 MCQNGGTCVDGINDYTCKCEGDFVGKFC  548 (604)
Q Consensus       521 ~C~~~~~C~~~~~~y~C~C~~G~~G~~C  548 (604)
                      .|+++|+|+...+  +|.|.+||+|..|
T Consensus         7 ~C~~~G~C~~~~g--~C~C~~g~~G~~C   32 (32)
T PF07974_consen    7 ICSGHGTCVSPCG--RCVCDSGYTGPDC   32 (32)
T ss_pred             ccCCCCEEeCCCC--EEECCCCCcCCCC
Confidence            5777788875533  7888888888765

The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length. This entry contains EGF domains found in a variety of extracellular and membrane proteins

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.48  E-value=0.0015  Score=37.20  Aligned_cols=21  Identities=43%  Similarity=0.575  Sum_probs=13.8

Q ss_pred             CCcEEeCCCCcceecCCCcCCC
Q psy15407        141 NLIKLDLRRNQVTGIEDNAFEG  162 (604)
Q Consensus       141 ~L~~L~Ls~N~i~~i~~~~f~~  162 (604)
                      +|++|||++|+|+.|++. |.+
T Consensus         1 ~L~~Ldls~n~l~~ip~~-~~~   21 (22)
T PF00560_consen    1 NLEYLDLSGNNLTSIPSS-FSN   21 (22)
T ss_dssp             TESEEEETSSEESEEGTT-TTT
T ss_pred             CccEEECCCCcCEeCChh-hcC
Confidence            466777777777766665 554

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG3665|consensus

Probab=96.37  E-value=0.00084  Score=74.69  Aligned_cols=82  Identities=21%  Similarity=0.203  Sum_probs=49.7

Q ss_pred             cceeecCCCCceeeccCCCCCCCCCCCeEEecCCcceee-eccccCCCCcccEEEccCCccccCCc------ccccCccc
Q psy15407        217 STMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCI-DRDALAGLKSLRIISLHGNDISMIPE------GAFADLHA  289 (604)
Q Consensus       217 ~L~~L~Ls~N~i~~l~~~~f~~l~~L~~L~Ls~N~l~~i-~~~~f~~l~~L~~L~Ls~N~l~~i~~------~~f~~l~~  289 (604)
                      +|..||+|+.+|+.+  ..++.|.+|+.|.+.+=.+..- .-..+..|++|++||+|..+....+.      +-...|++
T Consensus       174 NL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~Lpe  251 (699)
T KOG3665|consen  174 NLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPE  251 (699)
T ss_pred             ccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCcc
Confidence            777777777777766  3466677777777766555441 11234457777777777665443331      11234677


Q ss_pred             ceeeeccCCCc
Q psy15407        290 ITHLAIGGNPL  300 (604)
Q Consensus       290 L~~L~L~~Npl  300 (604)
                      |+.||.++..+
T Consensus       252 LrfLDcSgTdi  262 (699)
T KOG3665|consen  252 LRFLDCSGTDI  262 (699)
T ss_pred             ccEEecCCcch
Confidence            77777776544

>KOG1218|consensus

Probab=96.31  E-value=0.39  Score=48.68  Aligned_cols=191  Identities=29%  Similarity=0.659  Sum_probs=94.5

Q ss_pred             CCCCcCCCCcccCCCCCCCCCCCCCeeeeCCCCceEeeCCCCCcCCCCCc---CCCcCCCCCCCCCcEEEeCCCCeEEec
Q psy15407        385 TPGYHGQHCEFMIDACYGNPCRNSGTCKLLEEGRFNCECAPGYTGDRCEI---NIDDCLSHKCENNATCVDLIQAYECRC  461 (604)
Q Consensus       385 ~~g~~G~~c~~~~~~C~~~~C~~~~~C~~~~~~~~~C~C~~g~~g~~C~~---~~~~C~~~~C~~~~~C~~~~~~~~C~C  461 (604)
                      ..+|.|..|+.+ .+|... |.. .+|.....   .|.+..+|.+..|..   ....|... |.+.+.+  ......|.|
T Consensus        96 ~~~~~g~~C~~~-~~~~~~-c~~-~~C~~~~~---~c~~~~~~~~~~C~~~~~~g~~C~~~-c~~~~~~--~~~~~~c~c  166 (316)
T KOG1218|consen   96 LNGYEGPQCESP-CPCGDG-CAE-KTCANPRR---ECRCGGGYIGEQCGEENLVGLKCQRD-CQCTGGC--DCKNGICTC  166 (316)
T ss_pred             CCCCCcccccCC-CCcCCc-ccc-cccCCCcc---ceecCCcCccccccccCCCCCCccCC-CCCcccc--CCCCCceec
Confidence            688999999743 233222 333 34543211   577777777777753   11122211 1111122  122345889


Q ss_pred             CCCCCCCCcccCCCcCCCCCCCCCCCCceeecCCCeEEecCCCC--------cCCcCcccCCCCCCCCCCCCCEEeeCCC
Q psy15407        462 APGFQGEFCQTKTPFCAGEYNPCRNGARCLDHFSHYTCECTPGF--------SGVNCTVNVDDCVNHMCQNGGTCVDGIN  533 (604)
Q Consensus       462 ~~g~~g~~C~~~~~~C~~~~~~C~~~~~C~~~~~~~~C~C~~g~--------~g~~c~~~~~~C~~~~C~~~~~C~~~~~  533 (604)
                      .+||.|..|......|.. ...|.+++.|....+.  +.+.+++        .|..|.. .     ..|..+..+.+...
T Consensus       167 ~~g~~g~~~~~~~~~c~~-~~~~~~g~~C~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-~-----~~c~~~~~~~~~~~  237 (316)
T KOG1218|consen  167 QPGFVGVFCVESCSGCSP-LTACENGAKCNRSTGS--CLCYPGPSGACKGGFHGCACLR-M-----CDCNEGYPCVNDCG  237 (316)
T ss_pred             cCCcccccccccCCCcCC-CcccCCCCeeeccccc--cccCCCCcccccCCccCCcCcc-c-----ccccCCCcccCCcC
Confidence            999999998755443442 3467777788665443  4444444        3333321 1     12344444433111


Q ss_pred             CeEeeeCCCCccCCCCcCcccccCCCCCCCC-CCCCCCCCc-eeCCCCCCCeeeecCCCCcCCCCCCCc
Q psy15407        534 DYTCKCEGDFVGKFCEIAPFVAMMYPQTSPC-QHHDCKNGI-CFQPQGSNDYLCKCAPGYSGKESLLQQ  600 (604)
Q Consensus       534 ~y~C~C~~G~~G~~C~~~~~~~~~~~~~~~C-~~~~C~~g~-C~~~~g~~~~~C~C~~G~~G~~C~~~~  600 (604)
                      .-.|.+..++.+..+.........   ...| ....|.+|. +.-..+    .|.|.+||.+..++...
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~c~c~~g~~~~~~~~----~~~~~~~~~~~~~~~~~  299 (316)
T KOG1218|consen  238 PGICGCVLGEGETVCLRERPKGSL---GGSCFQRCQCGGGLVCRPGKG----SCRCSPGAALATCQKIC  299 (316)
T ss_pred             CceeEeCcccccccccccCcccee---cCccccceeeCCCCccccccc----cccCCCccccccccccc
Confidence            225666666654444332111111   1111 122344444 444333    48888888888876543

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=96.15  E-value=0.003  Score=37.62  Aligned_cols=23  Identities=48%  Similarity=0.787  Sum_probs=20.9

Q ss_pred             CCCCcEEeCCCCcceecCCCcCC
Q psy15407        139 LPNLIKLDLRRNQVTGIEDNAFE  161 (604)
Q Consensus       139 l~~L~~L~Ls~N~i~~i~~~~f~  161 (604)
                      |++|++|+|++|+|+.|++++|.
T Consensus         1 L~~L~~L~L~~N~l~~lp~~~f~   23 (26)
T smart00369        1 LPNLRELDLSNNQLSSLPPGAFQ   23 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHHHcc
Confidence            57899999999999999999886

>smart00370 LRR Leucine-rich repeats, outliers

Probab=96.15  E-value=0.003  Score=37.62  Aligned_cols=23  Identities=48%  Similarity=0.787  Sum_probs=20.9

Q ss_pred             CCCCcEEeCCCCcceecCCCcCC
Q psy15407        139 LPNLIKLDLRRNQVTGIEDNAFE  161 (604)
Q Consensus       139 l~~L~~L~Ls~N~i~~i~~~~f~  161 (604)
                      |++|++|+|++|+|+.|++++|.
T Consensus         1 L~~L~~L~L~~N~l~~lp~~~f~   23 (26)
T smart00370        1 LPNLRELDLSNNQLSSLPPGAFQ   23 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHHHcc
Confidence            57899999999999999999886

>KOG1218|consensus

Probab=96.15  E-value=0.15  Score=51.70  Aligned_cols=153  Identities=29%  Similarity=0.625  Sum_probs=81.6

Q ss_pred             ceeeeCCCCCcCCCCcccCCC-CCCCCCCCCCeeeeC-CCCceEeeC-CCCCcCCCCCcCCCcCCCCCCCCCcEEEeCCC
Q psy15407        379 QYQCRCTPGYHGQHCEFMIDA-CYGNPCRNSGTCKLL-EEGRFNCEC-APGYTGDRCEINIDDCLSHKCENNATCVDLIQ  455 (604)
Q Consensus       379 ~~~C~C~~g~~G~~c~~~~~~-C~~~~C~~~~~C~~~-~~~~~~C~C-~~g~~g~~C~~~~~~C~~~~C~~~~~C~~~~~  455 (604)
                      ...|.+..+|.|..|+..... .....|...+.|... ........| ..+|.|..|+. ..+|... |.. .+|.+...
T Consensus        48 ~~~~~~~~~~~~~~c~~~~~~~~~~~~c~~~~~c~~~~~~~~~~~~~~~~~~~g~~C~~-~~~~~~~-c~~-~~C~~~~~  124 (316)
T KOG1218|consen   48 SGECGLGYGFVGSVCRIECVCGNAGGGCSQPCRCKNGGTCVSSTGYCHLNGYEGPQCES-PCPCGDG-CAE-KTCANPRR  124 (316)
T ss_pred             ceeEecccccCCCccccccccCCCCCcccCccccCCCCcccCCCCcccCCCCCcccccC-CCCcCCc-ccc-cccCCCcc
Confidence            457888888888876532211 112223333333221 011223344 68888988873 3344332 333 45544332


Q ss_pred             CeEEecCCCCCCCCccc---CCCcCCCCCCCCCCCCceeecCCCeEEecCCCCcCCcCcccCCCCC-CCCCCCCCEEeeC
Q psy15407        456 AYECRCAPGFQGEFCQT---KTPFCAGEYNPCRNGARCLDHFSHYTCECTPGFSGVNCTVNVDDCV-NHMCQNGGTCVDG  531 (604)
Q Consensus       456 ~~~C~C~~g~~g~~C~~---~~~~C~~~~~~C~~~~~C~~~~~~~~C~C~~g~~g~~c~~~~~~C~-~~~C~~~~~C~~~  531 (604)
                        .|.+..+|.+..|..   ....|..   .|.....+.  .....|.|.+||.|..|......|. ...|.+++.|...
T Consensus       125 --~c~~~~~~~~~~C~~~~~~g~~C~~---~c~~~~~~~--~~~~~c~c~~g~~g~~~~~~~~~c~~~~~~~~g~~C~~~  197 (316)
T KOG1218|consen  125 --ECRCGGGYIGEQCGEENLVGLKCQR---DCQCTGGCD--CKNGICTCQPGFVGVFCVESCSGCSPLTACENGAKCNRS  197 (316)
T ss_pred             --ceecCCcCccccccccCCCCCCccC---CCCCccccC--CCCCceeccCCcccccccccCCCcCCCcccCCCCeeecc
Confidence              577777777777754   1223332   121111221  1234689999999999975444355 3467777899876


Q ss_pred             CCCeEeeeCCCC
Q psy15407        532 INDYTCKCEGDF  543 (604)
Q Consensus       532 ~~~y~C~C~~G~  543 (604)
                      .+  .+.+.+++
T Consensus       198 ~~--~~~~~~~~  207 (316)
T KOG1218|consen  198 TG--SCLCYPGP  207 (316)
T ss_pred             cc--ccccCCCC
Confidence            65  34444444

>PF07974 EGF_2: EGF-like domain; InterPro: IPR013111 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins

Probab=96.15  E-value=0.0075  Score=37.78  Aligned_cols=26  Identities=27%  Similarity=0.876  Sum_probs=19.6

Q ss_pred             CCCCCCceeecCCCeEEecCCCCcCCcC
Q psy15407        483 PCRNGARCLDHFSHYTCECTPGFSGVNC  510 (604)
Q Consensus       483 ~C~~~~~C~~~~~~~~C~C~~g~~g~~c  510 (604)
                      .|.++|+|+..  ..+|.|.+||+|..|
T Consensus         7 ~C~~~G~C~~~--~g~C~C~~g~~G~~C   32 (32)
T PF07974_consen    7 ICSGHGTCVSP--CGRCVCDSGYTGPDC   32 (32)
T ss_pred             ccCCCCEEeCC--CCEEECCCCCcCCCC
Confidence            57788888754  357888888888765

The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length. This entry contains EGF domains found in a variety of extracellular and membrane proteins

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.15  E-value=0.0036  Score=35.60  Aligned_cols=14  Identities=50%  Similarity=0.420  Sum_probs=5.8

Q ss_pred             CCeEEecCCcceee
Q psy15407        242 LSQLILSYNKLQCI  255 (604)
Q Consensus       242 L~~L~Ls~N~l~~i  255 (604)
                      |++|+|++|+|+.|
T Consensus         2 L~~Ldls~n~l~~i   15 (22)
T PF00560_consen    2 LEYLDLSGNNLTSI   15 (22)
T ss_dssp             ESEEEETSSEESEE
T ss_pred             ccEEECCCCcCEeC
Confidence            33444444444433

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG2120|consensus

Probab=96.14  E-value=5.1e-05  Score=72.67  Aligned_cols=58  Identities=19%  Similarity=0.076  Sum_probs=34.6

Q ss_pred             CCCCCCeEEecCCc-ceeeeccccCCCCcccEEEccCCccccCCccc---ccCcccceeeeccC
Q psy15407        238 PLSKLSQLILSYNK-LQCIDRDALAGLKSLRIISLHGNDISMIPEGA---FADLHAITHLAIGG  297 (604)
Q Consensus       238 ~l~~L~~L~Ls~N~-l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~---f~~l~~L~~L~L~~  297 (604)
                      ..++|..||||++. |+.--..+|..++.|++|.|+...  .|++..   |...++|.+|++.+
T Consensus       311 rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY--~i~p~~~~~l~s~psl~yLdv~g  372 (419)
T KOG2120|consen  311 RCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCY--DIIPETLLELNSKPSLVYLDVFG  372 (419)
T ss_pred             hCCceeeeccccccccCchHHHHHHhcchheeeehhhhc--CCChHHeeeeccCcceEEEEecc
Confidence            46778888887764 332112345566777877776554  334432   45566777777665

>PF12661 hEGF: Human growth factor-like EGF; PDB: 2YGQ_A 2E26_A 3A7Q_A 2YGP_A 2YGO_A 1HRE_A 1HAE_A 1HAF_A 1HRF_A

Probab=96.10  E-value=0.0034  Score=30.52  Aligned_cols=12  Identities=33%  Similarity=1.124  Sum_probs=6.8

Q ss_pred             eeeCCCCccCCC
Q psy15407        537 CKCEGDFVGKFC  548 (604)
Q Consensus       537 C~C~~G~~G~~C  548 (604)
                      |.|++||+|.+|
T Consensus         2 C~C~~G~~G~~C   13 (13)
T PF12661_consen    2 CQCPPGWTGPNC   13 (13)
T ss_dssp             EEE-TTEETTTT
T ss_pred             ccCcCCCcCCCC
Confidence            666666666654

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=95.99  E-value=0.0043  Score=36.94  Aligned_cols=23  Identities=43%  Similarity=0.751  Sum_probs=16.8

Q ss_pred             CCcccEEEccCCccccCCccccc
Q psy15407        263 LKSLRIISLHGNDISMIPEGAFA  285 (604)
Q Consensus       263 l~~L~~L~Ls~N~l~~i~~~~f~  285 (604)
                      |++|+.|+|++|+|+.||+++|.
T Consensus         1 L~~L~~L~L~~N~l~~lp~~~f~   23 (26)
T smart00369        1 LPNLRELDLSNNQLSSLPPGAFQ   23 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHHHcc
Confidence            45677777777777777777664

>smart00370 LRR Leucine-rich repeats, outliers

Probab=95.99  E-value=0.0043  Score=36.94  Aligned_cols=23  Identities=43%  Similarity=0.751  Sum_probs=16.8

Q ss_pred             CCcccEEEccCCccccCCccccc
Q psy15407        263 LKSLRIISLHGNDISMIPEGAFA  285 (604)
Q Consensus       263 l~~L~~L~Ls~N~l~~i~~~~f~  285 (604)
                      |++|+.|+|++|+|+.||+++|.
T Consensus         1 L~~L~~L~L~~N~l~~lp~~~f~   23 (26)
T smart00370        1 LPNLRELDLSNNQLSSLPPGAFQ   23 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHHHcc
Confidence            45677777777777777777664

>KOG3665|consensus

Probab=95.98  E-value=0.0029  Score=70.49  Aligned_cols=58  Identities=14%  Similarity=0.219  Sum_probs=32.5

Q ss_pred             CccCcEEecCCCcceeecCCCccCCCCCCcEEeCCCCcceecCCCcCCCcccCCcCCCCC
Q psy15407        114 PLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDNY  173 (604)
Q Consensus       114 ~~~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~l~~  173 (604)
                      .+.++.|.+.+-.+..-.-..++.++++|..||+|+-+|+.+  ...+.|.+|+.|.+.+
T Consensus       147 LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrn  204 (699)
T KOG3665|consen  147 LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRN  204 (699)
T ss_pred             CcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHHhccC
Confidence            345566666665553221112356677777777777777766  3345555555554443

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=95.49  E-value=0.00084  Score=63.71  Aligned_cols=187  Identities=18%  Similarity=0.157  Sum_probs=106.0

Q ss_pred             CCCCCCeeCCCeEEcCCCCCC-cCCCCC------CccCcEEecCCCcceeecCCC------------ccCCCCCCcEEeC
Q psy15407         87 ACPSGCSCDGTRVDCSQRGLK-EIPKDI------PLYTTELILNDNEIGKIKSDG------------LFGRLPNLIKLDL  147 (604)
Q Consensus        87 ~CP~~C~C~~~~l~cs~~~L~-~iP~~l------~~~~~~L~L~~N~i~~i~~~~------------~f~~l~~L~~L~L  147 (604)
                      .||..     ..|++|.|.+. ..|..+      ...++.|.|++|.+..+....            -...-|.|+.++.
T Consensus        90 kcp~l-----~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vic  164 (388)
T COG5238          90 KCPRL-----QKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVIC  164 (388)
T ss_pred             cCCcc-----eeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEe
Confidence            57776     78888888876 445433      234478888888876553211            0234577888888


Q ss_pred             CCCcceecCCC----cCCCcccCCcCCCCCCCCCccccccEEEccCCccccccccccceeeeeeccccCCccccceeecC
Q psy15407        148 RRNQVTGIEDN----AFEGENDQGCLGDNYCPPKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDL  223 (604)
Q Consensus       148 s~N~i~~i~~~----~f~~l~~L~~L~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L  223 (604)
                      ..|++..-+..    .|..-.+|+.+.+..|.+.-              +         ....+...-.....+|+.|||
T Consensus       165 grNRlengs~~~~a~~l~sh~~lk~vki~qNgIrp--------------e---------gv~~L~~~gl~y~~~LevLDl  221 (388)
T COG5238         165 GRNRLENGSKELSAALLESHENLKEVKIQQNGIRP--------------E---------GVTMLAFLGLFYSHSLEVLDL  221 (388)
T ss_pred             ccchhccCcHHHHHHHHHhhcCceeEEeeecCcCc--------------c---------hhHHHHHHHHHHhCcceeeec
Confidence            88877654322    12211223322222221100              0         000000000112247889999


Q ss_pred             CCCceeecc----CCCCCCCCCCCeEEecCCcceeeeccc----cC--CCCcccEEEccCCcccc-------CCcccccC
Q psy15407        224 SNNQIGFLS----NFTFSPLSKLSQLILSYNKLQCIDRDA----LA--GLKSLRIISLHGNDISM-------IPEGAFAD  286 (604)
Q Consensus       224 s~N~i~~l~----~~~f~~l~~L~~L~Ls~N~l~~i~~~~----f~--~l~~L~~L~Ls~N~l~~-------i~~~~f~~  286 (604)
                      ..|.++...    ..++..++.|+.|.|...-++.-...+    |.  ..++|..|-+.+|.+..       ++.-.-..
T Consensus       222 qDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~  301 (388)
T COG5238         222 QDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDA  301 (388)
T ss_pred             cccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcc
Confidence            999887643    345566777899999888776543222    22  34788888888887651       12111245


Q ss_pred             cccceeeeccCCCcc
Q psy15407        287 LHAITHLAIGGNPLY  301 (604)
Q Consensus       287 l~~L~~L~L~~Npl~  301 (604)
                      ++-|..|.+.||.+.
T Consensus       302 ~p~L~~le~ngNr~~  316 (388)
T COG5238         302 VPLLVDLERNGNRIK  316 (388)
T ss_pred             cHHHHHHHHccCcch
Confidence            677888888999886

>PF12662 cEGF: Complement Clr-like EGF-like

Probab=95.48  E-value=0.013  Score=33.89  Aligned_cols=10  Identities=60%  Similarity=1.766  Sum_probs=5.4

Q ss_pred             eEEecCCCCc
Q psy15407        497 YTCECTPGFS  506 (604)
Q Consensus       497 ~~C~C~~g~~  506 (604)
                      |+|.|++||.
T Consensus         2 y~C~C~~Gy~   11 (24)
T PF12662_consen    2 YTCSCPPGYQ   11 (24)
T ss_pred             EEeeCCCCCc
Confidence            4555555554

>KOG0473|consensus

Probab=95.41  E-value=0.0004  Score=64.34  Aligned_cols=82  Identities=21%  Similarity=0.203  Sum_probs=72.6

Q ss_pred             cceeecCCCCceeeccCCCCCCCCCCCeEEecCCcceeeeccccCCCCcccEEEccCCccccCCcccccCcccceeeecc
Q psy15407        217 STMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIG  296 (604)
Q Consensus       217 ~L~~L~Ls~N~i~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~  296 (604)
                      ..+.|||+.|++..+.. .|+-++.|..|+|+.|.|..++ ..|..+..++.+++..|.++.+|. .|..++.++.+++.
T Consensus        43 r~tvld~~s~r~vn~~~-n~s~~t~~~rl~~sknq~~~~~-~d~~q~~e~~~~~~~~n~~~~~p~-s~~k~~~~k~~e~k  119 (326)
T KOG0473|consen   43 RVTVLDLSSNRLVNLGK-NFSILTRLVRLDLSKNQIKFLP-KDAKQQRETVNAASHKNNHSQQPK-SQKKEPHPKKNEQK  119 (326)
T ss_pred             eeeeehhhhhHHHhhcc-chHHHHHHHHHhccHhhHhhCh-hhHHHHHHHHHHHhhccchhhCCc-cccccCCcchhhhc
Confidence            67789999999988865 5788899999999999999994 567888999999999999999987 58999999999999


Q ss_pred             CCCcc
Q psy15407        297 GNPLY  301 (604)
Q Consensus       297 ~Npl~  301 (604)
                      +|+|.
T Consensus       120 ~~~~~  124 (326)
T KOG0473|consen  120 KTEFF  124 (326)
T ss_pred             cCcch
Confidence            99964

>PF12662 cEGF: Complement Clr-like EGF-like

Probab=95.23  E-value=0.017  Score=33.36  Aligned_cols=10  Identities=50%  Similarity=1.700  Sum_probs=4.9

Q ss_pred             eEeeCCCCCc
Q psy15407        419 FNCECAPGYT  428 (604)
Q Consensus       419 ~~C~C~~g~~  428 (604)
                      |.|.|++||.
T Consensus         2 y~C~C~~Gy~   11 (24)
T PF12662_consen    2 YTCSCPPGYQ   11 (24)
T ss_pred             EEeeCCCCCc
Confidence            4455555554

>smart00051 DSL delta serrate ligand

Probab=95.21  E-value=0.028  Score=41.54  Aligned_cols=46  Identities=22%  Similarity=0.559  Sum_probs=30.7

Q ss_pred             CeEeeeCCCCccCCCCcCcccccCCCCCCCCCC-CCCCCCc-eeCCCCCCCeeeecCCCCcCCCC
Q psy15407        534 DYTCKCEGDFVGKFCEIAPFVAMMYPQTSPCQH-HDCKNGI-CFQPQGSNDYLCKCAPGYSGKES  596 (604)
Q Consensus       534 ~y~C~C~~G~~G~~C~~~~~~~~~~~~~~~C~~-~~C~~g~-C~~~~g~~~~~C~C~~G~~G~~C  596 (604)
                      .|+-.|+++|.|..|+..            |.. .++..+. |.. .|.    |+|.+||+|..|
T Consensus        16 ~~rv~C~~~~yG~~C~~~------------C~~~~d~~~~~~Cd~-~G~----~~C~~Gw~G~~C   63 (63)
T smart00051       16 QIRVTCDENYYGEGCNKF------------CRPRDDFFGHYTCDE-NGN----KGCLEGWMGPYC   63 (63)
T ss_pred             EEEeeCCCCCcCCccCCE------------eCcCccccCCccCCc-CCC----EecCCCCcCCCC
Confidence            345579999999999753            221 1222333 754 443    999999999987

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=95.20  E-value=0.0022  Score=60.94  Aligned_cols=80  Identities=14%  Similarity=0.123  Sum_probs=45.3

Q ss_pred             cceeecCCCCceeeccC----CCCCCCCCCCeEEecCCcceee--ec---cccCCCCcccEEEccCCccccCCc----cc
Q psy15407        217 STMYRDLSNNQIGFLSN----FTFSPLSKLSQLILSYNKLQCI--DR---DALAGLKSLRIISLHGNDISMIPE----GA  283 (604)
Q Consensus       217 ~L~~L~Ls~N~i~~l~~----~~f~~l~~L~~L~Ls~N~l~~i--~~---~~f~~l~~L~~L~Ls~N~l~~i~~----~~  283 (604)
                      .|+.++...|++..-+.    ..|..-..|+++.+..|.|+.-  .-   ..+..+.+|++|||..|-++..-.    .+
T Consensus       158 ~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~a  237 (388)
T COG5238         158 KLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADA  237 (388)
T ss_pred             CceEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHH
Confidence            66677777777655332    2233345677777777766532  11   112234677777777777764322    23


Q ss_pred             ccCcccceeeecc
Q psy15407        284 FADLHAITHLAIG  296 (604)
Q Consensus       284 f~~l~~L~~L~L~  296 (604)
                      +..++.|+.|.|.
T Consensus       238 l~~W~~lrEL~ln  250 (388)
T COG5238         238 LCEWNLLRELRLN  250 (388)
T ss_pred             hcccchhhhcccc
Confidence            4455566666665

>PHA02887 EGF-like protein; Provisional

Probab=95.17  E-value=0.019  Score=46.71  Aligned_cols=33  Identities=27%  Similarity=0.583  Sum_probs=28.5

Q ss_pred             CCCCCCceeCCCCCCCeeeecCCCCcCCCCCCC
Q psy15407        567 HDCKNGICFQPQGSNDYLCKCAPGYSGKESLLQ  599 (604)
Q Consensus       567 ~~C~~g~C~~~~g~~~~~C~C~~G~~G~~C~~~  599 (604)
                      +-|-||.|.-......+.|.|+.||+|.+||..
T Consensus        92 ~YCiHG~C~yI~dL~epsCrC~~GYtG~RCE~v  124 (126)
T PHA02887         92 DFCINGECMNIIDLDEKFCICNKGYTGIRCDEV  124 (126)
T ss_pred             CEeeCCEEEccccCCCceeECCCCcccCCCCcc
Confidence            458889998877767899999999999999864

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=95.15  E-value=0.012  Score=31.02  Aligned_cols=15  Identities=27%  Similarity=0.572  Sum_probs=6.0

Q ss_pred             cccEEEccCCccccC
Q psy15407        265 SLRIISLHGNDISMI  279 (604)
Q Consensus       265 ~L~~L~Ls~N~l~~i  279 (604)
                      +|+.|+|++|+|+.+
T Consensus         2 ~L~~L~l~~n~L~~l   16 (17)
T PF13504_consen    2 NLRTLDLSNNRLTSL   16 (17)
T ss_dssp             T-SEEEETSS--SSE
T ss_pred             ccCEEECCCCCCCCC
Confidence            445555555555444

...

>KOG3512|consensus

Probab=95.05  E-value=0.045  Score=55.70  Aligned_cols=131  Identities=23%  Similarity=0.522  Sum_probs=66.2

Q ss_pred             cEEEeCCCC-eEEecCCCCCCCCcccCCC-cCCCCCCCCCCCCceeecCCCeEEecCCCCcCCcCcccCCCCC--CCCCC
Q psy15407        448 ATCVDLIQA-YECRCAPGFQGEFCQTKTP-FCAGEYNPCRNGARCLDHFSHYTCECTPGFSGVNCTVNVDDCV--NHMCQ  523 (604)
Q Consensus       448 ~~C~~~~~~-~~C~C~~g~~g~~C~~~~~-~C~~~~~~C~~~~~C~~~~~~~~C~C~~g~~g~~c~~~~~~C~--~~~C~  523 (604)
                      ..|+....+ ++|.|..+-.|..|+..-. ....   +.+. ++-......-.|.|...  +..|..+ .++-  +..++
T Consensus       285 s~Cv~d~~~~ltCdC~HNTaGPdCgrCKpfy~dR---PW~r-aT~~~a~~c~ac~Cn~h--arrcrfn-~Ely~lSgr~S  357 (592)
T KOG3512|consen  285 SRCVMDESSHLTCDCEHNTAGPDCGRCKPFYYDR---PWGR-ATALPANECVACNCNGH--ARRCRFN-MELYRLSGRRS  357 (592)
T ss_pred             ceeeeccCCceEEecccCCCCCCcccccccccCC---Cccc-cccCCCccccccccchh--hhhcccc-hhhhcccCccc
Confidence            468998999 8999999999998864211 1111   1111 11111111112333321  1122111 0110  12232


Q ss_pred             CCCEEee----CCCCeEe-eeCCCCccCCCCcCcccccCCCCCCCCCCCCCCC----C-ceeCCCCCCCeeeecCCCCcC
Q psy15407        524 NGGTCVD----GINDYTC-KCEGDFVGKFCEIAPFVAMMYPQTSPCQHHDCKN----G-ICFQPQGSNDYLCKCAPGYSG  593 (604)
Q Consensus       524 ~~~~C~~----~~~~y~C-~C~~G~~G~~C~~~~~~~~~~~~~~~C~~~~C~~----g-~C~~~~g~~~~~C~C~~G~~G  593 (604)
                       +|+|++    +.| -.| .|.+||+.+.=.       .......|...+|+.    | .|..+.|+    |.|.+|.+|
T Consensus       358 -ggvClnCrHnTaG-rhChyCreGyyRd~s~-------pl~hrkaCk~CdChpVGs~gktCNq~tGq----CpCkeGvtG  424 (592)
T KOG3512|consen  358 -GGVCLNCRHNTAG-RHCHYCREGYYRDGSK-------PLTHRKACKACDCHPVGSAGKTCNQTTGQ----CPCKEGVTG  424 (592)
T ss_pred             -cceEeecccCCCC-cccccccCccccCCCC-------CCchhhhhhhcCCcccccccccccccCCc----ccCCCCCcc
Confidence             345643    333 345 578887633211       111234566656643    2 28877765    999999999


Q ss_pred             CCCCC
Q psy15407        594 KESLL  598 (604)
Q Consensus       594 ~~C~~  598 (604)
                      ..|+.
T Consensus       425 ~tCnr  429 (592)
T KOG3512|consen  425 LTCNR  429 (592)
T ss_pred             ccccc
Confidence            99974

>PHA03099 epidermal growth factor-like protein (EGF-like protein); Provisional

Probab=94.91  E-value=0.023  Score=47.10  Aligned_cols=41  Identities=22%  Similarity=0.592  Sum_probs=32.1

Q ss_pred             CCCCCC---CCCCCCCceeCCCCCCCeeeecCCCCcCCCCCCCc
Q psy15407        560 QTSPCQ---HHDCKNGICFQPQGSNDYLCKCAPGYSGKESLLQQ  600 (604)
Q Consensus       560 ~~~~C~---~~~C~~g~C~~~~g~~~~~C~C~~G~~G~~C~~~~  600 (604)
                      ...+|.   ++-|-||.|.-......+.|.|..||+|.+||..+
T Consensus        41 ~i~~Cp~ey~~YClHG~C~yI~dl~~~~CrC~~GYtGeRCEh~d   84 (139)
T PHA03099         41 AIRLCGPEGDGYCLHGDCIHARDIDGMYCRCSHGYTGIRCQHVV   84 (139)
T ss_pred             ccccCChhhCCEeECCEEEeeccCCCceeECCCCccccccccee
Confidence            345564   35588999987666678999999999999998654

>smart00051 DSL delta serrate ligand

Probab=94.87  E-value=0.032  Score=41.27  Aligned_cols=46  Identities=20%  Similarity=0.494  Sum_probs=30.8

Q ss_pred             eEEecCCCCcCCcCcccCCCCCC-CCCCCCCEEeeCCCCeEeeeCCCCccCCC
Q psy15407        497 YTCECTPGFSGVNCTVNVDDCVN-HMCQNGGTCVDGINDYTCKCEGDFVGKFC  548 (604)
Q Consensus       497 ~~C~C~~g~~g~~c~~~~~~C~~-~~C~~~~~C~~~~~~y~C~C~~G~~G~~C  548 (604)
                      ++-.|.++|.|..|.   ..|.. +.+..+..|.. .|  .|+|.+||+|..|
T Consensus        17 ~rv~C~~~~yG~~C~---~~C~~~~d~~~~~~Cd~-~G--~~~C~~Gw~G~~C   63 (63)
T smart00051       17 IRVTCDENYYGEGCN---KFCRPRDDFFGHYTCDE-NG--NKGCLEGWMGPYC   63 (63)
T ss_pred             EEeeCCCCCcCCccC---CEeCcCccccCCccCCc-CC--CEecCCCCcCCCC
Confidence            344688888888886   33432 23556677754 34  6888999988876

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=94.72  E-value=0.017  Score=30.47  Aligned_cols=17  Identities=47%  Similarity=0.749  Sum_probs=9.3

Q ss_pred             CCCcEEeCCCCcceecC
Q psy15407        140 PNLIKLDLRRNQVTGIE  156 (604)
Q Consensus       140 ~~L~~L~Ls~N~i~~i~  156 (604)
                      ++|+.|+|++|+|+.++
T Consensus         1 ~~L~~L~l~~n~L~~lP   17 (17)
T PF13504_consen    1 PNLRTLDLSNNRLTSLP   17 (17)
T ss_dssp             TT-SEEEETSS--SSE-
T ss_pred             CccCEEECCCCCCCCCc
Confidence            46777788877776653

...

>PF01463 LRRCT: Leucine rich repeat C-terminal domain; InterPro: IPR000483 Leucine-rich repeats (LRR, see IPR001611 from INTERPRO) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=94.61  E-value=0.012  Score=34.67  Aligned_cols=24  Identities=17%  Similarity=0.353  Sum_probs=18.6

Q ss_pred             CCCCCcccccCcccccCCCCceeec
Q psy15407         39 SPCQHHDCKNGICFQPQGSNDYLCK   63 (604)
Q Consensus        39 ~~C~~~~~~~~~~~~~~~~~~~~c~   63 (604)
                      ++|++|..++| ++.++...+|.|.
T Consensus         2 ~~Ca~P~~lrg-~l~~~~~~~f~C~   25 (25)
T PF01463_consen    2 ARCASPPELRG-PLLDLPPSDFKCS   25 (25)
T ss_dssp             -BEEESGGGTT-BGGGSSGGG----
T ss_pred             CccCCChHHcC-cHhhCCcccCcCC
Confidence            68999999999 9999999999984

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions []. Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response. LRRs are often flanked by cysteine-rich domains: an N-terminal LRR domain (IPR000372 from INTERPRO) and a C-terminal LRR domain. This entry represents the C-terminal LRR domain. ; PDB: 3RFE_B 3REZ_D 2WFH_A 2V70_B 2V9S_C 2V9T_B 1W8A_A.

>PF14670 FXa_inhibition: Coagulation Factor Xa inhibitory site; PDB: 3Q3K_B 1NFY_B 1LQD_A 1G2L_B 1IQF_L 2UWP_B 2VH6_B 3KQC_L 2P93_L 2BQW_A

Probab=94.15  E-value=0.04  Score=35.55  Aligned_cols=18  Identities=28%  Similarity=0.848  Sum_probs=11.4

Q ss_pred             EEeeCCCCeEeeeCCCCc
Q psy15407        527 TCVDGINDYTCKCEGDFV  544 (604)
Q Consensus       527 ~C~~~~~~y~C~C~~G~~  544 (604)
                      .|++.+++|+|.|++||+
T Consensus        11 ~C~~~~g~~~C~C~~Gy~   28 (36)
T PF14670_consen   11 ICVNTPGSYRCSCPPGYK   28 (36)
T ss_dssp             EEEEETTSEEEE-STTEE
T ss_pred             CCccCCCceEeECCCCCE
Confidence            566666666666666665

...

>PF01463 LRRCT: Leucine rich repeat C-terminal domain; InterPro: IPR000483 Leucine-rich repeats (LRR, see IPR001611 from INTERPRO) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=93.62  E-value=0.023  Score=33.42  Aligned_cols=24  Identities=46%  Similarity=0.976  Sum_probs=18.3

Q ss_pred             cccCCCCcccccccccCCCCceeec
Q psy15407        323 ARCTEPASMRDKLLLTAPASSFQCK  347 (604)
Q Consensus       323 ~~C~~P~~l~g~~l~~~~~~~~~C~  347 (604)
                      ++|++|+.++| .+.++...+|.|+
T Consensus         2 ~~Ca~P~~lrg-~l~~~~~~~f~C~   25 (25)
T PF01463_consen    2 ARCASPPELRG-PLLDLPPSDFKCS   25 (25)
T ss_dssp             -BEEESGGGTT-BGGGSSGGG----
T ss_pred             CccCCChHHcC-cHhhCCcccCcCC
Confidence            58999999999 9999999999884

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions []. Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response. LRRs are often flanked by cysteine-rich domains: an N-terminal LRR domain (IPR000372 from INTERPRO) and a C-terminal LRR domain. This entry represents the C-terminal LRR domain. ; PDB: 3RFE_B 3REZ_D 2WFH_A 2V70_B 2V9S_C 2V9T_B 1W8A_A.

>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily

Probab=93.28  E-value=0.069  Score=31.63  Aligned_cols=19  Identities=47%  Similarity=0.730  Sum_probs=15.9

Q ss_pred             CCCCcEEeCCCCcceecCC
Q psy15407        139 LPNLIKLDLRRNQVTGIED  157 (604)
Q Consensus       139 l~~L~~L~Ls~N~i~~i~~  157 (604)
                      |++|+.|+|++|+|+.|+.
T Consensus         1 L~~L~~L~L~~NkI~~IEn   19 (26)
T smart00365        1 LTNLEELDLSQNKIKKIEN   19 (26)
T ss_pred             CCccCEEECCCCccceecC
Confidence            5789999999999988764

>KOG0473|consensus

Probab=93.26  E-value=0.0025  Score=59.28  Aligned_cols=42  Identities=29%  Similarity=0.388  Sum_probs=23.5

Q ss_pred             CccCcEEecCCCcceeecCCCccCCCCCCcEEeCCCCcceecCC
Q psy15407        114 PLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIED  157 (604)
Q Consensus       114 ~~~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i~~  157 (604)
                      +..++.|||+.|++-.+...  |+.++.|..|+|+.|+|..++.
T Consensus        41 ~kr~tvld~~s~r~vn~~~n--~s~~t~~~rl~~sknq~~~~~~   82 (326)
T KOG0473|consen   41 FKRVTVLDLSSNRLVNLGKN--FSILTRLVRLDLSKNQIKFLPK   82 (326)
T ss_pred             cceeeeehhhhhHHHhhccc--hHHHHHHHHHhccHhhHhhChh
Confidence            34445666666666555443  5556666666666555555443

>PF14670 FXa_inhibition: Coagulation Factor Xa inhibitory site; PDB: 3Q3K_B 1NFY_B 1LQD_A 1G2L_B 1IQF_L 2UWP_B 2VH6_B 3KQC_L 2P93_L 2BQW_A

Probab=92.68  E-value=0.078  Score=34.23  Aligned_cols=18  Identities=33%  Similarity=1.100  Sum_probs=13.7

Q ss_pred             ceeecCCCeEEecCCCCc
Q psy15407        489 RCLDHFSHYTCECTPGFS  506 (604)
Q Consensus       489 ~C~~~~~~~~C~C~~g~~  506 (604)
                      .|++.+++|+|.|++||.
T Consensus        11 ~C~~~~g~~~C~C~~Gy~   28 (36)
T PF14670_consen   11 ICVNTPGSYRCSCPPGYK   28 (36)
T ss_dssp             EEEEETTSEEEE-STTEE
T ss_pred             CCccCCCceEeECCCCCE
Confidence            578888888888888886

...

>PF12946 EGF_MSP1_1: MSP1 EGF domain 1; InterPro: IPR024730 This EGF-like domain is found at the C terminus of the malaria parasite MSP1 protein

Probab=90.58  E-value=0.14  Score=32.89  Aligned_cols=28  Identities=18%  Similarity=0.590  Sum_probs=16.7

Q ss_pred             CCCCCCCCCCEEeeCC-CCeEeeeCCCCc
Q psy15407        517 CVNHMCQNGGTCVDGI-NDYTCKCEGDFV  544 (604)
Q Consensus       517 C~~~~C~~~~~C~~~~-~~y~C~C~~G~~  544 (604)
                      |....|..++.|+... |++.|.|..||.
T Consensus         2 C~~~~cP~NA~C~~~~dG~eecrCllgyk   30 (37)
T PF12946_consen    2 CIDTKCPANAGCFRYDDGSEECRCLLGYK   30 (37)
T ss_dssp             -SSS---TTEEEEEETTSEEEEEE-TTEE
T ss_pred             ccCccCCCCcccEEcCCCCEEEEeeCCcc
Confidence            4445677778887655 788888888885

MSP1 is the merozoite surface protein 1. This domain is part of the C-terminal fragment that is proteolytically processed from the the rest of the protein and is left attached to the surface of the invading parasite [].; PDB: 1N1I_C 2FLG_A 1CEJ_A 2NPR_A 1B9W_A 1OB1_F.

>PF01414 DSL: Delta serrate ligand; InterPro: IPR001774 Ligands of the Delta/Serrate/lag-2 (DSL) family and their receptors, members of the lin-12/Notch family, mediate cell-cell interactions that specify cell fate in invertebrates and vertebrates

Probab=90.39  E-value=0.078  Score=39.19  Aligned_cols=46  Identities=26%  Similarity=0.655  Sum_probs=20.9

Q ss_pred             CeEeeeCCCCccCCCCcCcccccCCCCCCCCCCCCCCCCc--eeCCCCCCCeeeecCCCCcCCCC
Q psy15407        534 DYTCKCEGDFVGKFCEIAPFVAMMYPQTSPCQHHDCKNGI--CFQPQGSNDYLCKCAPGYSGKES  596 (604)
Q Consensus       534 ~y~C~C~~G~~G~~C~~~~~~~~~~~~~~~C~~~~C~~g~--C~~~~g~~~~~C~C~~G~~G~~C  596 (604)
                      .++-.|.+.|.|..|..-            |.+.+=..+.  |.. .|.    =+|.+||+|+.|
T Consensus        16 ~~rv~C~~nyyG~~C~~~------------C~~~~d~~ghy~Cd~-~G~----~~C~~Gw~G~~C   63 (63)
T PF01414_consen   16 RIRVVCDENYYGPNCSKF------------CKPRDDSFGHYTCDS-NGN----KVCLPGWTGPNC   63 (63)
T ss_dssp             -------TTEETTTT-EE---------------EEETTEEEEE-S-S------EEE-TTEESTTS
T ss_pred             EEEEECCCCCCCccccCC------------cCCCcCCcCCcccCC-CCC----CCCCCCCcCCCC
Confidence            456789999999999853            3222111222  663 322    579999999987

In Caenorhabditis elegans, two DSL genes, lag-2 and apx-1, influence different cell fate decisions during development []. Molecular interaction between Notch and Serrate, another EGF-homologous transmembrane protein containing a region of striking similarity to Delta, has been shown and the same two EGF repeats of Notch may also constitute a Serrate binding domain [, ].; GO: 0007154 cell communication, 0016020 membrane; PDB: 2VJ2_A.

>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily

Probab=90.26  E-value=0.23  Score=29.38  Aligned_cols=16  Identities=44%  Similarity=0.530  Sum_probs=8.5

Q ss_pred             CCCCeEEecCCcceee
Q psy15407        240 SKLSQLILSYNKLQCI  255 (604)
Q Consensus       240 ~~L~~L~Ls~N~l~~i  255 (604)
                      .+|+.|+|++|+|+.|
T Consensus         2 ~~L~~L~L~~NkI~~I   17 (26)
T smart00365        2 TNLEELDLSQNKIKKI   17 (26)
T ss_pred             CccCEEECCCCcccee
Confidence            3455555555555554

>PF12946 EGF_MSP1_1: MSP1 EGF domain 1; InterPro: IPR024730 This EGF-like domain is found at the C terminus of the malaria parasite MSP1 protein

Probab=89.42  E-value=0.2  Score=32.19  Aligned_cols=26  Identities=27%  Similarity=0.765  Sum_probs=12.0

Q ss_pred             CCCCCCCeeeeCCCCceEeeCCCCCc
Q psy15407        403 NPCRNSGTCKLLEEGRFNCECAPGYT  428 (604)
Q Consensus       403 ~~C~~~~~C~~~~~~~~~C~C~~g~~  428 (604)
                      .+|+.++.|.....|+..|.|..||.
T Consensus         5 ~~cP~NA~C~~~~dG~eecrCllgyk   30 (37)
T PF12946_consen    5 TKCPANAGCFRYDDGSEECRCLLGYK   30 (37)
T ss_dssp             S---TTEEEEEETTSEEEEEE-TTEE
T ss_pred             ccCCCCcccEEcCCCCEEEEeeCCcc
Confidence            44555555555444555555555554

MSP1 is the merozoite surface protein 1. This domain is part of the C-terminal fragment that is proteolytically processed from the the rest of the protein and is left attached to the surface of the invading parasite [].; PDB: 1N1I_C 2FLG_A 1CEJ_A 2NPR_A 1B9W_A 1OB1_F.

>KOG3763|consensus

Probab=88.47  E-value=0.18  Score=53.13  Aligned_cols=61  Identities=31%  Similarity=0.411  Sum_probs=38.0

Q ss_pred             CCCCCCeEEecCCcceeeeccccC----CCCcccEEEccCC--ccccCCc-ccccCcccceeeeccCCCcc
Q psy15407        238 PLSKLSQLILSYNKLQCIDRDALA----GLKSLRIISLHGN--DISMIPE-GAFADLHAITHLAIGGNPLY  301 (604)
Q Consensus       238 ~l~~L~~L~Ls~N~l~~i~~~~f~----~l~~L~~L~Ls~N--~l~~i~~-~~f~~l~~L~~L~L~~Npl~  301 (604)
                      +.+.+..|.|++|+|..+.  +++    ..++|..|+|++|  .+....+ +.++ ...|++|-|.|||+.
T Consensus       216 n~p~i~sl~lsnNrL~~Ld--~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k-~l~Leel~l~GNPlc  283 (585)
T KOG3763|consen  216 NFPEILSLSLSNNRLYHLD--ALSSLSQIAPKLKTLDLSHNHSKISSESELDKLK-GLPLEELVLEGNPLC  283 (585)
T ss_pred             CCcceeeeecccchhhchh--hhhHHHHhcchhheeecccchhhhcchhhhhhhc-CCCHHHeeecCCccc
Confidence            3566777778888877763  232    2367888888888  4443332 1122 224778888888873

>PHA03099 epidermal growth factor-like protein (EGF-like protein); Provisional

Probab=87.81  E-value=0.51  Score=39.41  Aligned_cols=30  Identities=27%  Similarity=0.876  Sum_probs=23.5

Q ss_pred             CCCCCCEEee--CCCCeEeeeCCCCccCCCCcC
Q psy15407        521 MCQNGGTCVD--GINDYTCKCEGDFVGKFCEIA  551 (604)
Q Consensus       521 ~C~~~~~C~~--~~~~y~C~C~~G~~G~~C~~~  551 (604)
                      -|-+| +|.-  ....+.|.|..||+|.+||..
T Consensus        52 YClHG-~C~yI~dl~~~~CrC~~GYtGeRCEh~   83 (139)
T PHA03099         52 YCLHG-DCIHARDIDGMYCRCSHGYTGIRCQHV   83 (139)
T ss_pred             EeECC-EEEeeccCCCceeECCCCcccccccce
Confidence            47664 8853  446789999999999999864

>PF01414 DSL: Delta serrate ligand; InterPro: IPR001774 Ligands of the Delta/Serrate/lag-2 (DSL) family and their receptors, members of the lin-12/Notch family, mediate cell-cell interactions that specify cell fate in invertebrates and vertebrates

Probab=87.33  E-value=0.26  Score=36.43  Aligned_cols=47  Identities=21%  Similarity=0.422  Sum_probs=21.0

Q ss_pred             CeEEecCCCCcCCcCcccCCCCCCC-CCCCCCEEeeCCCCeEeeeCCCCccCCC
Q psy15407        496 HYTCECTPGFSGVNCTVNVDDCVNH-MCQNGGTCVDGINDYTCKCEGDFVGKFC  548 (604)
Q Consensus       496 ~~~C~C~~g~~g~~c~~~~~~C~~~-~C~~~~~C~~~~~~y~C~C~~G~~G~~C  548 (604)
                      .++-.|.+.|.|..|.   ..|.+. .-..+-+|.. .|  .-+|.+||+|..|
T Consensus        16 ~~rv~C~~nyyG~~C~---~~C~~~~d~~ghy~Cd~-~G--~~~C~~Gw~G~~C   63 (63)
T PF01414_consen   16 RIRVVCDENYYGPNCS---KFCKPRDDSFGHYTCDS-NG--NKVCLPGWTGPNC   63 (63)
T ss_dssp             -------TTEETTTT----EE---EEETTEEEEE-S-S----EEE-TTEESTTS
T ss_pred             EEEEECCCCCCCcccc---CCcCCCcCCcCCcccCC-CC--CCCCCCCCcCCCC
Confidence            3567899999999997   234332 1122345653 33  3479999999876

In Caenorhabditis elegans, two DSL genes, lag-2 and apx-1, influence different cell fate decisions during development []. Molecular interaction between Notch and Serrate, another EGF-homologous transmembrane protein containing a region of striking similarity to Delta, has been shown and the same two EGF repeats of Notch may also constitute a Serrate binding domain [, ].; GO: 0007154 cell communication, 0016020 membrane; PDB: 2VJ2_A.

>KOG2120|consensus

Probab=87.15  E-value=0.024  Score=54.86  Aligned_cols=153  Identities=20%  Similarity=0.154  Sum_probs=81.1

Q ss_pred             CcEEecCCCcceeecCCCccCCCCCCcEEeCCCCcceecCCCcCCCc--------------------------ccCCcCC
Q psy15407        117 TTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGE--------------------------NDQGCLG  170 (604)
Q Consensus       117 ~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~l--------------------------~~L~~L~  170 (604)
                      ++.|||++..|+.-.-.++++...+|+.|.|.++++..--....+.-                          ..|..|+
T Consensus       187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LN  266 (419)
T KOG2120|consen  187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELN  266 (419)
T ss_pred             hHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcC
Confidence            47899999888654444556777788888888887765222233333                          4444444


Q ss_pred             CCCCCCCccc-cccEEEccCCcccccccc---ccceeeeeeccccCCccccceeecCCCCc-eeeccCCCCCCCCCCCeE
Q psy15407        171 DNYCPPKCTC-TVRVLFYDGRAGECYIAV---ELFSSRIRVSYYVGNYPVSTMYRDLSNNQ-IGFLSNFTFSPLSKLSQL  245 (604)
Q Consensus       171 l~~~~~~~~~-~l~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~-i~~l~~~~f~~l~~L~~L  245 (604)
                      |+++....-. ...+-..+.....+.+..   ++..+  .+..+...-| .|.+||||.+. |+.--...|-.++.|++|
T Consensus       267 lsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~s--h~~tL~~rcp-~l~~LDLSD~v~l~~~~~~~~~kf~~L~~l  343 (419)
T KOG2120|consen  267 LSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKS--HLSTLVRRCP-NLVHLDLSDSVMLKNDCFQEFFKFNYLQHL  343 (419)
T ss_pred             chHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhh--HHHHHHHhCC-ceeeeccccccccCchHHHHHHhcchheee
Confidence            4443211100 000011111111111111   11111  2222222333 88999999875 332112345678889998


Q ss_pred             EecCCcceeeeccc---cCCCCcccEEEccCC
Q psy15407        246 ILSYNKLQCIDRDA---LAGLKSLRIISLHGN  274 (604)
Q Consensus       246 ~Ls~N~l~~i~~~~---f~~l~~L~~L~Ls~N  274 (604)
                      .|+...  .|+|..   |...++|.+|++.+-
T Consensus       344 SlsRCY--~i~p~~~~~l~s~psl~yLdv~g~  373 (419)
T KOG2120|consen  344 SLSRCY--DIIPETLLELNSKPSLVYLDVFGC  373 (419)
T ss_pred             ehhhhc--CCChHHeeeeccCcceEEEEeccc
Confidence            888764  344543   566789999997653

>PHA02887 EGF-like protein; Provisional

Probab=87.00  E-value=0.55  Score=38.54  Aligned_cols=29  Identities=28%  Similarity=0.839  Sum_probs=21.0

Q ss_pred             CCCCCCEEe--eCCCCeEeeeCCCCccCCCCc
Q psy15407        521 MCQNGGTCV--DGINDYTCKCEGDFVGKFCEI  550 (604)
Q Consensus       521 ~C~~~~~C~--~~~~~y~C~C~~G~~G~~C~~  550 (604)
                      -|-+ |+|.  .....+.|.|++||+|.+|+.
T Consensus        93 YCiH-G~C~yI~dL~epsCrC~~GYtG~RCE~  123 (126)
T PHA02887         93 FCIN-GECMNIIDLDEKFCICNKGYTGIRCDE  123 (126)
T ss_pred             EeeC-CEEEccccCCCceeECCCCcccCCCCc
Confidence            4653 6884  334567899999999999875

>smart00364 LRR_BAC Leucine-rich repeats, bacterial type

Probab=86.98  E-value=0.39  Score=28.32  Aligned_cols=18  Identities=28%  Similarity=0.610  Sum_probs=14.3

Q ss_pred             CcccEEEccCCccccCCc
Q psy15407        264 KSLRIISLHGNDISMIPE  281 (604)
Q Consensus       264 ~~L~~L~Ls~N~l~~i~~  281 (604)
                      ++|+.|++++|+|+.+|+
T Consensus         2 ~~L~~L~vs~N~Lt~LPe   19 (26)
T smart00364        2 PSLKELNVSNNQLTSLPE   19 (26)
T ss_pred             cccceeecCCCccccCcc
Confidence            467888888888888876

>KOG3516|consensus

Probab=84.14  E-value=1.1  Score=51.30  Aligned_cols=38  Identities=32%  Similarity=0.957  Sum_probs=33.6

Q ss_pred             CCCcCCCCCCCCeeecCCCCceeeeCC-CCCcCCCCcccC
Q psy15407        359 NACYKSPCTNQGVCEPLPERQYQCRCT-PGYHGQHCEFMI  397 (604)
Q Consensus       359 ~~C~~~~C~~~g~C~~~~~~~~~C~C~-~g~~G~~c~~~~  397 (604)
                      +.|.++||.++|.|.. ....|.|.|. .||+|..|.+.+
T Consensus       546 drClPN~CehgG~C~Q-s~~~f~C~C~~TGY~GatCHtsi  584 (1306)
T KOG3516|consen  546 DRCLPNPCEHGGKCSQ-SWDDFECNCELTGYKGATCHTSI  584 (1306)
T ss_pred             cccCCccccCCCcccc-cccceeEeccccccccccccCCC
Confidence            5799999999999997 5678999998 999999998654

>PF00053 Laminin_EGF: Laminin EGF-like (Domains III and V); InterPro: IPR002049 Laminins [] are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation

Probab=84.11  E-value=0.84  Score=31.79  Aligned_cols=24  Identities=25%  Similarity=0.617  Sum_probs=17.0

Q ss_pred             EEeeCCCCeEeeeCCCCccCCCCcCc
Q psy15407        527 TCVDGINDYTCKCEGDFVGKFCEIAP  552 (604)
Q Consensus       527 ~C~~~~~~y~C~C~~G~~G~~C~~~~  552 (604)
                      .|....|  +|.|+++|+|..|+...
T Consensus        12 ~C~~~~G--~C~C~~~~~G~~C~~C~   35 (49)
T PF00053_consen   12 TCDPSTG--QCVCKPGTTGPRCDQCK   35 (49)
T ss_dssp             SEEETCE--EESBSTTEESTTS-EE-
T ss_pred             cccCCCC--EEeccccccCCcCcCCC
Confidence            6766444  89999999999988643

They are composed of distinct but related alpha, beta and gamma chains. The three chains form a cross-shaped molecule that consist of a long arm and three short globular arms. The long arm consist of a coiled coil structure contributed by all three chains and cross-linked by interchain disulphide bonds. Beside different types of globular domains each subunit contains, in its first half, consecutive repeats of about 60 amino acids in length that include eight conserved cysteines []. The tertiary structure [, ] of this domain is remotely similar in its N-terminal to that of the EGF-like module (see PDOC00021 from PROSITEDOC). It is known as a 'LE' or 'laminin-type EGF-like' domain. The number of copies of the LE domain in the different forms of laminins is highly variable; from 3 up to 22 copies have been found. A schematic representation of the topology of the four disulphide bonds in the LE domain is shown below. +-------------------+ +-|-----------+ | +--------+ +-----------------+ | | | | | | | | xxCxCxxxxxxxxxxxCxxxxxxxCxxCxxxxxGxxCxxCxxgaagxxxxxxxxxxxCxx sssssssssssssssssssssssssssssssssss 'C': conserved cysteine involved in a disulphide bond 'a': conserved aromatic residue 'G': conserved glycine (lower case = less conserved) 's': region similar to the EGF-like domain In mouse laminin gamma-1 chain, the seventh LE domain has been shown to be the only one that binds with a high affinity to nidogen []. The binding-sites are located on the surface within the loops C1-C3 and C5-C6 [, ]. Long consecutive arrays of LE domains in laminins form rod-like elements of limited flexibility [], which determine the spacing in the formation of laminin networks of basement membranes [].; PDB: 3TBD_A 3ZYG_B 3ZYI_B 2Y38_A 1KLO_A 1NPE_B 3ZYJ_B 1TLE_A.

>smart00364 LRR_BAC Leucine-rich repeats, bacterial type

Probab=84.01  E-value=0.64  Score=27.43  Aligned_cols=18  Identities=33%  Similarity=0.665  Sum_probs=14.4

Q ss_pred             CCCcEEeCCCCcceecCC
Q psy15407        140 PNLIKLDLRRNQVTGIED  157 (604)
Q Consensus       140 ~~L~~L~Ls~N~i~~i~~  157 (604)
                      ++|+.|++++|+|+.++.
T Consensus         2 ~~L~~L~vs~N~Lt~LPe   19 (26)
T smart00364        2 PSLKELNVSNNQLTSLPE   19 (26)
T ss_pred             cccceeecCCCccccCcc
Confidence            468888888888888775

>cd00055 EGF_Lam Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in tandem arrays; the domain contains 4 disulfide bonds (loops a-d) the first three resemble epidermal growth factor (EGF); the number of copies of this domain in the different forms of laminins is highly variable ranging from 3 up to 22 copies

Probab=83.65  E-value=1.9  Score=30.17  Aligned_cols=23  Identities=26%  Similarity=0.823  Sum_probs=16.8

Q ss_pred             EeeCCCCeEeeeCCCCccCCCCcCc
Q psy15407        528 CVDGINDYTCKCEGDFVGKFCEIAP  552 (604)
Q Consensus       528 C~~~~~~y~C~C~~G~~G~~C~~~~  552 (604)
                      |....|  +|.|++||+|..|+...
T Consensus        14 C~~~~G--~C~C~~~~~G~~C~~C~   36 (50)
T cd00055          14 CDPGTG--QCECKPNTTGRRCDRCA   36 (50)
T ss_pred             ccCCCC--EEeCCCcCCCCCCCCCC
Confidence            544444  78899999999888653

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=83.11  E-value=0.62  Score=26.81  Aligned_cols=17  Identities=53%  Similarity=0.630  Sum_probs=11.5

Q ss_pred             CCCCcEEeCCCCcceec
Q psy15407        139 LPNLIKLDLRRNQVTGI  155 (604)
Q Consensus       139 l~~L~~L~Ls~N~i~~i  155 (604)
                      +++|++|+|++|+|+..
T Consensus         1 ~~~L~~L~l~~n~i~~~   17 (24)
T PF13516_consen    1 NPNLETLDLSNNQITDE   17 (24)
T ss_dssp             -TT-SEEE-TSSBEHHH
T ss_pred             CCCCCEEEccCCcCCHH
Confidence            46899999999998753

...

>KOG3516|consensus

Probab=82.85  E-value=1  Score=51.66  Aligned_cols=41  Identities=27%  Similarity=0.655  Sum_probs=35.6

Q ss_pred             CCCCCCCCCCCCCc-eeCCCCCCCeeeecC-CCCcCCCCCCCccc
Q psy15407        560 QTSPCQHHDCKNGI-CFQPQGSNDYLCKCA-PGYSGKESLLQQTT  602 (604)
Q Consensus       560 ~~~~C~~~~C~~g~-C~~~~g~~~~~C~C~-~G~~G~~C~~~~~~  602 (604)
                      ..+.|.++.|++|+ |....  .+|.|.|. .||.|..|....+.
T Consensus       544 i~drClPN~CehgG~C~Qs~--~~f~C~C~~TGY~GatCHtsi~e  586 (1306)
T KOG3516|consen  544 ISDRCLPNPCEHGGKCSQSW--DDFECNCELTGYKGATCHTSIYE  586 (1306)
T ss_pred             cccccCCccccCCCcccccc--cceeEeccccccccccccCCCcc
Confidence            47899999999988 99877  78999998 99999999876553

>KOG4308|consensus

Probab=82.73  E-value=0.0082  Score=64.03  Aligned_cols=86  Identities=24%  Similarity=0.257  Sum_probs=53.7

Q ss_pred             ccceeecCCCCceeecc----CCCCCCCCC-CCeEEecCCcceeee----ccccCCC-CcccEEEccCCccccCCcc---
Q psy15407        216 VSTMYRDLSNNQIGFLS----NFTFSPLSK-LSQLILSYNKLQCID----RDALAGL-KSLRIISLHGNDISMIPEG---  282 (604)
Q Consensus       216 ~~L~~L~Ls~N~i~~l~----~~~f~~l~~-L~~L~Ls~N~l~~i~----~~~f~~l-~~L~~L~Ls~N~l~~i~~~---  282 (604)
                      .++++|.|+++.++...    ..++...++ +..|++..|++....    ...|..+ ..|++|+++.|.|+.-...   
T Consensus       204 ~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~  283 (478)
T KOG4308|consen  204 SSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLA  283 (478)
T ss_pred             ccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHH
Confidence            36777788887776421    234445555 667888888876541    1223444 5678888888888743322   


Q ss_pred             -cccCcccceeeeccCCCcc
Q psy15407        283 -AFADLHAITHLAIGGNPLY  301 (604)
Q Consensus       283 -~f~~l~~L~~L~L~~Npl~  301 (604)
                       .+.....++.|.|+.|++.
T Consensus       284 ~~l~~~~~l~~l~l~~n~l~  303 (478)
T KOG4308|consen  284 EVLVSCRQLEELSLSNNPLT  303 (478)
T ss_pred             HHHhhhHHHHHhhcccCccc
Confidence             2334457788888888875

>cd01475 vWA_Matrilin VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity

Probab=80.98  E-value=1.7  Score=41.58  Aligned_cols=18  Identities=22%  Similarity=0.848  Sum_probs=10.6

Q ss_pred             EEeeCCCCeEeeeCCCCc
Q psy15407        527 TCVDGINDYTCKCEGDFV  544 (604)
Q Consensus       527 ~C~~~~~~y~C~C~~G~~  544 (604)
                      .|.+..|+|.|.|++||+
T Consensus       200 ~C~~~~g~~~c~c~~g~~  217 (224)
T cd01475         200 VCISTPGSYLCACTEGYA  217 (224)
T ss_pred             eEEcCCCCEEeECCCCcc
Confidence            455555666666666654

Some members of the matrilin family are expressed specifically in developing cartilage rudiments. The matrilin family consists of at least four members. All the members of the matrilin family contain VWA domains, EGF-like domains and a heptad repeat coiled-coiled domain at the carboxy terminus which is responsible for the oligomerization of the matrilins. The VWA domains have been shown to be essential for matrilin network formation by interacting with matrix ligands.

>KOG3864|consensus

Probab=80.94  E-value=0.22  Score=45.72  Aligned_cols=80  Identities=20%  Similarity=0.161  Sum_probs=54.6

Q ss_pred             cceeecCCCCceeeccCCCCCCCCCCCeEEecCCc------ceeeeccccCCCCcccEEEccCCc-cccCCcccccCccc
Q psy15407        217 STMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNK------LQCIDRDALAGLKSLRIISLHGND-ISMIPEGAFADLHA  289 (604)
Q Consensus       217 ~L~~L~Ls~N~i~~l~~~~f~~l~~L~~L~Ls~N~------l~~i~~~~f~~l~~L~~L~Ls~N~-l~~i~~~~f~~l~~  289 (604)
                      .++.+|-++..|..+.-..|..++.|+.|.|.+.+      |..|..    ..++|+.|+|+++. |+.---..+..+++
T Consensus       102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~----~~~~L~~L~lsgC~rIT~~GL~~L~~lkn  177 (221)
T KOG3864|consen  102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGG----LAPSLQDLDLSGCPRITDGGLACLLKLKN  177 (221)
T ss_pred             eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcc----cccchheeeccCCCeechhHHHHHHHhhh
Confidence            57778888888887777777788888888777664      333322    34788899998774 66544444566777


Q ss_pred             ceeeeccCCCc
Q psy15407        290 ITHLAIGGNPL  300 (604)
Q Consensus       290 L~~L~L~~Npl  300 (604)
                      |+.|.|.+=|.
T Consensus       178 Lr~L~l~~l~~  188 (221)
T KOG3864|consen  178 LRRLHLYDLPY  188 (221)
T ss_pred             hHHHHhcCchh
Confidence            77777765443

>cd01475 vWA_Matrilin VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity

Probab=80.87  E-value=1.8  Score=41.52  Aligned_cols=20  Identities=25%  Similarity=0.762  Sum_probs=14.0

Q ss_pred             cEEEeCCCCeEEecCCCCCC
Q psy15407        448 ATCVDLIQAYECRCAPGFQG  467 (604)
Q Consensus       448 ~~C~~~~~~~~C~C~~g~~g  467 (604)
                      ..|.++.|+|.|.|.+||+.
T Consensus       199 ~~C~~~~g~~~c~c~~g~~~  218 (224)
T cd01475         199 QVCISTPGSYLCACTEGYAL  218 (224)
T ss_pred             ceEEcCCCCEEeECCCCccC
Confidence            35777777777777777753

Some members of the matrilin family are expressed specifically in developing cartilage rudiments. The matrilin family consists of at least four members. All the members of the matrilin family contain VWA domains, EGF-like domains and a heptad repeat coiled-coiled domain at the carboxy terminus which is responsible for the oligomerization of the matrilins. The VWA domains have been shown to be essential for matrilin network formation by interacting with matrix ligands.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	604
2wfh_A	193	The Human Slit 2 Dimerization Domain D4 Length = 19		3e-43
1w8a_A	192	Third Lrr Domain Of Drosophila Slit Length = 192		1e-36
2v70_A	220	Third Lrr Domain Of Human Slit2 Length = 220		5e-34
3zyo_A	411	Crystal Structure Of The N-Terminal Leucine Rich Re		2e-22
3zyn_A	321	Crystal Structure Of The N-Terminal Leucine Rich Re		4e-22
3zyi_A	452	Netring2 In Complex With Ngl2 Length = 452		2e-21
2vj3_A	135	Human Notch-1 Egfs 11-13 Length = 135		9e-21
2vj3_A	135	Human Notch-1 Egfs 11-13 Length = 135		7e-13
2vj3_A	135	Human Notch-1 Egfs 11-13 Length = 135		3e-07
1toz_A	116	Nmr Structure Of The Human Notch-1 Ligand Binding R		3e-20
1toz_A	116	Nmr Structure Of The Human Notch-1 Ligand Binding R		3e-12
1toz_A	116	Nmr Structure Of The Human Notch-1 Ligand Binding R		6e-07
2v9s_A	220	Second Lrr Domain Of Human Slit2 Length = 220		1e-18
2v9t_B	220	Complex Between The Second Lrr Domain Of Slit2 And		3e-18
2o6s_A	208	Structural Diversity Of The Hagfish Variable Lympho		3e-17
3zyj_A	440	Netring1 In Complex With Ngl1 Length = 440		1e-16
3e6j_A	229	Crystal Structure Of Variable Lymphocyte Receptor (		9e-16
2o6q_A	270	Structural Diversity Of The Hagfish Variable Lympho		2e-13
3m19_A	251	Crystal Structure Of Variable Lymphocyte Receptor V		2e-13
3m18_A	251	Crystal Structure Of Variable Lymphocyte Receptor V		4e-13
3kj4_A	286	Structure Of Rat Nogo Receptor Bound To 1d9 Antagon		2e-12
4d90_A	143	Crystal Structure Of Del-1 Egf Domains Length = 143		2e-12
4d90_A	143	Crystal Structure Of Del-1 Egf Domains Length = 143		4e-10
1ozn_A	285	1.5a Crystal Structure Of The Nogo Receptor Ligand		2e-12
1p8t_A	285	Crystal Structure Of Nogo-66 Receptor Length = 285		3e-12
3g3a_A	178	Structure Of A Lamprey Variable Lymphocyte Receptor		4e-12
3g3a_A	178	Structure Of A Lamprey Variable Lymphocyte Receptor		8e-10
3g39_A	170	Structure Of A Lamprey Variable Lymphocyte Receptor		4e-12
3g39_A	170	Structure Of A Lamprey Variable Lymphocyte Receptor		8e-10
3g3b_A	170	Structure Of A Lamprey Variable Lymphocyte Receptor		2e-11
3g3b_A	170	Structure Of A Lamprey Variable Lymphocyte Receptor		2e-08
2o6r_A	177	Structural Diversity Of The Hagfish Variable Lympho		4e-11
1xku_A	330	Crystal Structure Of The Dimeric Protein Core Of De		6e-11
1xcd_A	329	Dimeric Bovine Tissue-Extracted Decorin, Crystal Fo		6e-11
3rfs_A	272	Design Of A Binding Scaffold Based On Variable Lymp		1e-10
2xot_A	361	Crystal Structure Of Neuronal Leucine Rich Repeat P		2e-10
3v44_A	407	Crystal Structure Of The N-Terminal Fragment Of Zeb		4e-10
2ft3_A	332	Crystal Structure Of The Biglycan Dimer Core Protei		1e-09
2id5_A	477	Crystal Structure Of The Lingo-1 Ectodomain Length		4e-09
3twi_D	179	Variable Lymphocyte Receptor Recognition Of The Imm		4e-09
3twi_D	179	Variable Lymphocyte Receptor Recognition Of The Imm		8e-08
2r9u_A	174	Crystal Structure Of Lamprey Variable Lymphocyte Re		5e-09
3rfj_A	279	Design Of A Binding Scaffold Based On Variable Lymp		1e-08
3v47_A	455	Crystal Structure Of The N-Tetminal Fragment Of Zeb		3e-08
2z66_A	306	Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 A		3e-07
1m0z_A	290	Crystal Structure Of The Von Willebrand Factor Bind		4e-07
1m10_B	290	Crystal Structure Of The Complex Of Glycoprotein Ib		4e-07
3ul9_A	278	Structure Of The Tv3 Mutant M41e Length = 278		6e-07
1u0n_D	265	The Ternary Von Willebrand Factor A1-Glycoprotein I		6e-07
3p72_A	269	Structure Of Platelet Glycoprotein 1b Alpha With A		6e-07
3ula_A	279	Crystal Structure Of The Tv3 Mutant F63w-Md-2-Erito		8e-07
3ul7_A	278	Crystal Structure Of The Tv3 Mutant F63w Length = 2		9e-07
2z62_A	276	Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 A		9e-07
3ul8_A	279	Crystal Structure Of The Tv3 Mutant V134l Length =		2e-06
2ygq_A	324	Wif Domain-Epidermal Growth Factor (Egf)-Like Domai		7e-06
3rez_A	129	Glycoprotein Gpib Variant Length = 129		2e-05
3rez_A	129	Glycoprotein Gpib Variant Length = 129		4e-04
2z7x_A	549	Crystal Structure Of The Tlr1-Tlr2 Heterodimer Indu		3e-05
2z80_A	353	Crystal Structure Of The Tlr1-Tlr2 Heterodimer Indu		3e-05
2z63_A	570	Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 A		4e-05
4arn_A	279	Crystal Structure Of The N-terminal Domain Of Droso		4e-05
3rfe_A	130	Crystal Structure Of Glycoprotein Gpib Ectodomain L		8e-05
3cig_A	697	Crystal Structure Of Mouse Tlr3 Ectodomain Length =		1e-04
3t6q_A	606	Crystal Structure Of Mouse Rp105MD-1 Complex Length		1e-04
3a79_A	580	Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex Len		1e-04
2z81_A	549	Crystal Structure Of The Tlr1-tlr2 Heterodimer Indu		1e-04
3a79_B	562	Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex Len		2e-04
3j0a_A	844	Homology Model Of Human Toll-Like Receptor 5 Fitted		4e-04
2rqz_A	38	Structure Of Sugar Modified Epidermal Growth Factor		4e-04
3rg1_A	612	Crystal Structure Of The Rp105MD-1 Complex Length =		8e-04

>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4 Length = 193

Iteration: 1
 Score =  173 bits (438), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 93/185 (50%), Positives = 117/185 (63%), Gaps = 16/185 (8%)
Query: 174 CPPKCTCTVRVLFYDGR------------AGECYIAVELFSSRIRVSYYVGNYPVSTMYR 221
           CP +CTC   V+    +              E Y+    F+    V   + NY   T+  
Sbjct: 4   CPTECTCLDTVVRCSNKGLKVLPKGIPRDVTELYLDGNQFT---LVPKELSNYKHLTLI- 59
Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPE 281
           DLSNN+I  LSN +FS +++L  LILSYN+L+CI      GLKSLR++SLHGNDIS++PE
Sbjct: 60  DLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPE 119
Query: 282 GAFADLHAITHLAIGGNPLYCDCGLAWLSEWVKRDYVEPGIARCTEPASMRDKLLLTAPA 341
           GAF DL A++HLAIG NPLYCDC + WLS+WVK +Y EPGIARC  P  M DKLLLT P+
Sbjct: 120 GAFNDLSALSHLAIGANPLYCDCNMQWLSDWVKSEYKEPGIARCAGPGEMADKLLLTTPS 179
Query: 342 SSFQC 346
             F C
Sbjct: 180 KKFTC 184

>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit Length = 192

Iteration: 1
 Score =  150 bits (380), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 92/265 (34%), Positives = 132/265 (49%), Gaps = 76/265 (28%)
Query: 88  CPSGCSCDGTRVDCSQRGLKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDL 147
           CP+ C C+GT VDC+ RGLKEIP+DIPL+TTEL+LNDNE+G+I SDGLFGRLP+L+KL+L
Sbjct: 2   CPAMCHCEGTTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLEL 61
Query: 148 RRNQVTGIEDNAFEGENDQGCLGDNYCPPKCTCTVRVLFYDGRAGECYIAVELFSSRIRV 207
           +RNQ+TGIE NAFEG +                       + + GE  I        I  
Sbjct: 62  KRNQLTGIEPNAFEGASH--------------------IQELQLGENKI------KEISN 95
Query: 208 SYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLR 267
             ++G + + T+  +L +NQI  +   +F  L+ L+ L L+ N                 
Sbjct: 96  KMFLGLHQLKTL--NLYDNQISCVMPGSFEHLNSLTSLNLASN----------------- 136
Query: 268 IISLHGNDISMIPEGAFADLHAITHLAIGGNPLYCDCGLAWLSEWVKRDYVEPGIARCTE 327
                                          P  C+C LAW +EW+++  +  G ARC  
Sbjct: 137 -------------------------------PFNCNCHLAWFAEWLRKKSLNGGAARCGA 165
Query: 328 PASMRDKLLLTAPASSFQCKEKVSD 352
           P+ +RD  +   P S F+C  + S+
Sbjct: 166 PSKVRDVQIKDLPHSEFKCSSENSE 190

>pdb|2V70|A Chain A, Third Lrr Domain Of Human Slit2 Length = 220

Iteration: 1
 Score =  142 bits (358), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 80/262 (30%), Positives = 128/262 (48%), Gaps = 52/262 (19%)
Query: 87  ACPSGCSCDGTRVDCSQRGLKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKLD 146
           ACP  C C+GT VDCS + L +IP+ IP YT EL LN+NE   +++ G+F +LP L K++
Sbjct: 4   ACPEKCRCEGTTVDCSNQKLNKIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKIN 63
Query: 147 LRRNQVTGIEDNAFEGENDQGCLGDNYCPPKCTCTVRVLFYDGRAGECYIAVELFSSRIR 206
              N++T IE+ AFE                           G +G   I          
Sbjct: 64  FSNNKITDIEEGAFE---------------------------GASGVNEIL--------- 87
Query: 207 VSYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSL 266
                           L++N++  + +  F  L  L  L+L  N++ C+  D+  GL S+
Sbjct: 88  ----------------LTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSV 131
Query: 267 RIISLHGNDISMIPEGAFADLHAITHLAIGGNPLYCDCGLAWLSEWVKRDYVEPGIARCT 326
           R++SL+ N I+ +  GAF  LH+++ L +  NP  C+C LAWL EW+++  +  G  RC 
Sbjct: 132 RLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCYLAWLGEWLRKKRIVTGNPRCQ 191
Query: 327 EPASMRDKLLLTAPASSFQCKE 348
           +P  +++  +       F C +
Sbjct: 192 KPYFLKEIPIQDVAIQDFTCDD 213

>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats And Immunoglobulin Domain Of Netrin-G Ligand-3 Length = 411

Iteration: 1
 Score =  103 bits (258), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 84/315 (26%), Positives = 142/315 (45%), Gaps = 48/315 (15%)
Query: 86  AACPSGCSCD--GTRVDCSQRGLKEIPKDIPLYTTELILNDNEIGKIKSD---------- 133
            +CP+ CSC    +RV C++R L E+P  IP+ T  L L +N I  I++D          
Sbjct: 4   TSCPAACSCSNQASRVICTRRELAEVPASIPVNTRYLNLQENSIQVIRTDTFKHLRHLEI 63
Query: 134 -------------GLFGRLPNLIKLDLRRNQVTGIEDNAFE--GENDQGCLGDN------ 172
                        G F  LP+L  L+L  N++T +   AFE   +  +  L +N      
Sbjct: 64  LQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIESIP 123
Query: 173 -YCPPKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYY------VGNYP-VSTMYR--- 221
            Y   +     R+   + +  E YI+   F   + + Y       + + P ++ + R   
Sbjct: 124 SYAFNRVPSLRRLDLGELKRLE-YISEAAFEGLVNLRYLNLGMCNLKDIPNLTALVRLEE 182
Query: 222 -DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIP 280
            +LS N++  +   +F  L+ L +L L + ++  I+R+A   LKSL  ++L  N++  +P
Sbjct: 183 LELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNLMSLP 242
Query: 281 EGAFADLHAITHLAIGGNPLYCDCGLAWLSEWVKRDYVEPGI--ARCTEPASMRDKLLLT 338
              F  LH +  + +  NP +C+C + WLS W+K          ARC  PA ++ + +  
Sbjct: 243 HDLFTPLHRLERVHLNHNPWHCNCDVLWLSWWLKETVPSNTTCCARCHAPAGLKGRYIGE 302
Query: 339 APASSFQCKEKVSDE 353
              S F C   V  E
Sbjct: 303 LDQSHFTCYAPVIVE 317

>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats Of Netrin-G Ligand-3 Length = 321

Iteration: 1
 Score =  103 bits (256), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 82/308 (26%), Positives = 140/308 (45%), Gaps = 48/308 (15%)
Query: 86  AACPSGCSC--DGTRVDCSQRGLKEIPKDIPLYTTELILNDNEIGKIKSD---------- 133
            +CP+ CSC    +RV C++R L E+P  IP+ T  L L +N I  I++D          
Sbjct: 4   TSCPAACSCSNQASRVICTRRELAEVPASIPVNTRYLNLQENSIQVIRTDTFKHLRHLEI 63
Query: 134 -------------GLFGRLPNLIKLDLRRNQVTGIEDNAFE--GENDQGCLGDN------ 172
                        G F  LP+L  L+L  N++T +   AFE   +  +  L +N      
Sbjct: 64  LQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIESIP 123
Query: 173 -YCPPKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYY------VGNYP-VSTMYR--- 221
            Y   +     R+   + +  E YI+   F   + + Y       + + P ++ + R   
Sbjct: 124 SYAFNRVPSLRRLDLGELKRLE-YISEAAFEGLVNLRYLNLGMCNLKDIPNLTALVRLEE 182
Query: 222 -DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIP 280
            +LS N++  +   +F  L+ L +L L + ++  I+R+A   LKSL  ++L  N++  +P
Sbjct: 183 LELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNLMSLP 242
Query: 281 EGAFADLHAITHLAIGGNPLYCDCGLAWLSEWVKRDYVEPGI--ARCTEPASMRDKLLLT 338
              F  LH +  + +  NP +C+C + WLS W+K          ARC  PA ++ + +  
Sbjct: 243 HDLFTPLHRLERVHLNHNPWHCNCDVLWLSWWLKETVPSNTTCCARCHAPAGLKGRYIGE 302
Query: 339 APASSFQC 346
              S F C
Sbjct: 303 LDQSHFTC 310

>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2 Length = 452

Iteration: 1
 Score =  100 bits (250), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 87/308 (28%), Positives = 132/308 (42%), Gaps = 50/308 (16%)
Query: 88  CPSGCSCDG--TRVDCSQRGLKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKL 145
           CPS CSC    ++V C++RGL E+P+ IP  T  L L +N I  I++D  F  L +L  L
Sbjct: 46  CPSVCSCSNQFSKVVCTRRGLSEVPQGIPSNTRYLNLMENNIQMIQADT-FRHLHHLEVL 104
Query: 146 DLRRNQVTGIEDNAFEGENDQGCLG--DNYCPP------KCTCTVRVLFYDGRAGEC--- 194
            L RN +  IE  AF G      L   DN+         +    +R L+      E    
Sbjct: 105 QLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPS 164
Query: 195 ---------------------YIAVELFSSRIRVSYY------VGNYP-----VSTMYRD 222
                                YI+   F     + Y       + + P     V     +
Sbjct: 165 YAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELE 224
Query: 223 LSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEG 282
           +S N    +   +F  LS L +L +  +++  I+R+A  GL SL  ++L  N++S +P  
Sbjct: 225 MSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHD 284
Query: 283 AFADLHAITHLAIGGNPLYCDCGLAWLSEWVKRDYVEPGIA---RCTEPASMRDKLLLTA 339
            F  L  +  L +  NP  CDC + WL+ W+ R+Y+        RC  P  MR + L+  
Sbjct: 285 LFTPLRYLVELHLHHNPWNCDCDILWLAWWL-REYIPTNSTCCGRCHAPMHMRGRYLVEV 343
Query: 340 PASSFQCK 347
             +SFQC 
Sbjct: 344 DQASFQCS 351

>pdb|2VJ3|A Chain A, Human Notch-1 Egfs 11-13 Length = 135

Iteration: 1
 Score = 98.6 bits (244), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 49/113 (43%), Positives = 73/113 (64%), Gaps = 5/113 (4%)
Query: 397 IDACY--GNPCRNSGTCKLLEEGRFNCECAPGYTGDRCEINIDDCLSHKCENNATCVDLI 454
           +D C    NPC ++G C +   G F C+C  GYTG RCEI++++C+S+ C+N+ATC+D I
Sbjct: 5   VDECSLGANPCEHAGKC-INTLGSFECQCLQGYTGPRCEIDVNECVSNPCQNDATCLDQI 63
Query: 455 QAYECRCAPGFQGEFCQTKTPFCAGEYNPCRNGARCLDHFSHYTCECTPGFSG 507
             ++C C PG++G  C+  T  CA   +PC +  RCLD  + + CEC  GF+G
Sbjct: 64  GEFQCICMPGYEGVHCEVNTDECAS--SPCLHNGRCLDKINEFQCECPTGFTG 114

>pdb|2VJ3|A Chain A, Human Notch-1 Egfs 11-13 Length = 135

Iteration: 1
 Score = 72.4 bits (176), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 36/118 (30%), Positives = 60/118 (50%), Gaps = 4/118 (3%)
Query: 435 NIDDCL--SHKCENNATCVDLIQAYECRCAPGFQGEFCQTKTPFCAGEYNPCRNGARCLD 492
           ++D+C   ++ CE+   C++ + ++EC+C  G+ G  C+     C    NPC+N A CLD
Sbjct: 4   DVDECSLGANPCEHAGKCINTLGSFECQCLQGYTGPRCEIDVNECVS--NPCQNDATCLD 61
Query: 493 HFSHYTCECTPGFSGXXXXXXXXXXXXHMCQNGGTCVDGINDYTCKCEGDFVGKFCEI 550
               + C C PG+ G              C + G C+D IN++ C+C   F G  C++
Sbjct: 62  QIGEFQCICMPGYEGVHCEVNTDECASSPCLHNGRCLDKINEFQCECPTGFTGHLCQV 119

>pdb|2VJ3|A Chain A, Human Notch-1 Egfs 11-13 Length = 135

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 33/117 (28%), Positives = 54/117 (46%), Gaps = 10/117 (8%)
Query: 477 CAGEYNPCRNGARCLDHFSHYTCECTPGFSGXXXXXXXXXXXXHMCQNGGTCVDGINDYT 536
           C+   NPC +  +C++    + C+C  G++G            + CQN  TC+D I ++ 
Sbjct: 8   CSLGANPCEHAGKCINTLGSFECQCLQGYTGPRCEIDVNECVSNPCQNDATCLDQIGEFQ 67
Query: 537 CKCEGDFVGKFCEIAPFVAMMYPQTSPCQHHDCKNGICFQPQGSNDYLCKCAPGYSG 593
           C C   + G  CE+          +SPC H    NG C      N++ C+C  G++G
Sbjct: 68  CICMPGYEGVHCEVNTDECA----SSPCLH----NGRCLDK--INEFQCECPTGFTG 114

>pdb|1TOZ|A Chain A, Nmr Structure Of The Human Notch-1 Ligand Binding Region Length = 116

Iteration: 1
 Score = 97.1 bits (240), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 49/113 (43%), Positives = 73/113 (64%), Gaps = 5/113 (4%)
Query: 397 IDACY--GNPCRNSGTCKLLEEGRFNCECAPGYTGDRCEINIDDCLSHKCENNATCVDLI 454
           +D C    NPC ++G C +   G F C+C  GYTG RCEI++++C+S+ C+N+ATC+D I
Sbjct: 3   VDECSLGANPCEHAGKC-INTLGSFECQCLQGYTGPRCEIDVNECVSNPCQNDATCLDQI 61
Query: 455 QAYECRCAPGFQGEFCQTKTPFCAGEYNPCRNGARCLDHFSHYTCECTPGFSG 507
             ++C C PG++G  C+  T  CA   +PC +  RCLD  + + CEC  GF+G
Sbjct: 62  GEFQCICMPGYEGVHCEVNTDECAS--SPCLHNGRCLDKINEFQCECPTGFTG 112

>pdb|1TOZ|A Chain A, Nmr Structure Of The Human Notch-1 Ligand Binding Region Length = 116

Iteration: 1
 Score = 70.1 bits (170), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 36/117 (30%), Positives = 59/117 (50%), Gaps = 4/117 (3%)
Query: 435 NIDDCL--SHKCENNATCVDLIQAYECRCAPGFQGEFCQTKTPFCAGEYNPCRNGARCLD 492
           ++D+C   ++ CE+   C++ + ++EC+C  G+ G  C+     C    NPC+N A CLD
Sbjct: 2   DVDECSLGANPCEHAGKCINTLGSFECQCLQGYTGPRCEIDVNECVS--NPCQNDATCLD 59
Query: 493 HFSHYTCECTPGFSGXXXXXXXXXXXXHMCQNGGTCVDGINDYTCKCEGDFVGKFCE 549
               + C C PG+ G              C + G C+D IN++ C+C   F G  C+
Sbjct: 60  QIGEFQCICMPGYEGVHCEVNTDECASSPCLHNGRCLDKINEFQCECPTGFTGHLCQ 116

>pdb|1TOZ|A Chain A, Nmr Structure Of The Human Notch-1 Ligand Binding Region Length = 116

Iteration: 1
 Score = 52.8 bits (125), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 33/117 (28%), Positives = 54/117 (46%), Gaps = 10/117 (8%)
Query: 477 CAGEYNPCRNGARCLDHFSHYTCECTPGFSGXXXXXXXXXXXXHMCQNGGTCVDGINDYT 536
           C+   NPC +  +C++    + C+C  G++G            + CQN  TC+D I ++ 
Sbjct: 6   CSLGANPCEHAGKCINTLGSFECQCLQGYTGPRCEIDVNECVSNPCQNDATCLDQIGEFQ 65
Query: 537 CKCEGDFVGKFCEIAPFVAMMYPQTSPCQHHDCKNGICFQPQGSNDYLCKCAPGYSG 593
           C C   + G  CE+          +SPC H    NG C      N++ C+C  G++G
Sbjct: 66  CICMPGYEGVHCEVNTDECA----SSPCLH----NGRCLDK--INEFQCECPTGFTG 112

>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2 Length = 220

Iteration: 1
 Score = 91.3 bits (225), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 70/259 (27%), Positives = 106/259 (40%), Gaps = 53/259 (20%)
Query: 88  CPSGCSCDGTRVDCSQRGLKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDL 147
           CP+ C+C    VDC  +GL EIP ++P   TE+ L  N I K+   G F     L ++DL
Sbjct: 5   CPAACTCSNNIVDCRGKGLTEIPTNLPETITEIRLEQNTI-KVIPPGAFSPYKKLRRIDL 63
Query: 148 RRNQVTGIEDNAFEGENDQGCLGDNYCPPKCTCTVRVLFYDGRAGECYIAVELFSSRIRV 207
             NQ++ +  +AF+G      L               + Y  +  E  +   LF     +
Sbjct: 64  SNNQISELAPDAFQGLRSLNSL---------------VLYGNKITE--LPKSLFEGLFSL 106
Query: 208 SYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLR 267
              + N            N+I  L    F  L  L+ L L  NKLQ I +          
Sbjct: 107 QLLLLNA-----------NKINXLRVDAFQDLHNLNLLSLYDNKLQTIAK---------- 145
Query: 268 IISLHGNDISMIPEGAFADLHAITHLAIGGNPLYCDCGLAWLSEWVKRDYVEPGIARCTE 327
                         G F+ L AI  + +  NP  CDC L WL++++  + +E   ARCT 
Sbjct: 146 --------------GTFSPLRAIQTMHLAQNPFICDCHLKWLADYLHTNPIETSGARCTS 191
Query: 328 PASMRDKLLLTAPASSFQC 346
           P  + +K +    +  F+C
Sbjct: 192 PRRLANKRIGQIKSKKFRC 210

>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The First Ig Domain From Robo1 Length = 220

Iteration: 1
 Score = 90.1 bits (222), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 70/259 (27%), Positives = 106/259 (40%), Gaps = 53/259 (20%)
Query: 88  CPSGCSCDGTRVDCSQRGLKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDL 147
           CP+ C+C    VDC  +GL EIP ++P   TE+ L  N I K+   G F     L ++DL
Sbjct: 5   CPAACTCSNNIVDCRGKGLTEIPTNLPETITEIRLEQNTI-KVIPPGAFSPYKKLRRIDL 63
Query: 148 RRNQVTGIEDNAFEGENDQGCLGDNYCPPKCTCTVRVLFYDGRAGECYIAVELFSSRIRV 207
             NQ++ +  +AF+G      L               + Y  +  E  +   LF     +
Sbjct: 64  SNNQISELAPDAFQGLRSLNSL---------------VLYGNKITE--LPKSLFEGLFSL 106
Query: 208 SYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLR 267
              + N            N+I  L    F  L  L+ L L  NKLQ I +          
Sbjct: 107 QLLLLNA-----------NKINCLRVDAFQDLHNLNLLSLYDNKLQTIAK---------- 145
Query: 268 IISLHGNDISMIPEGAFADLHAITHLAIGGNPLYCDCGLAWLSEWVKRDYVEPGIARCTE 327
                         G F+ L AI  + +  NP  CDC L WL++++  + +E   ARCT 
Sbjct: 146 --------------GTFSPLRAIQTMHLAQNPFICDCHLKWLADYLHTNPIETSGARCTS 191
Query: 328 PASMRDKLLLTAPASSFQC 346
           P  + +K +    +  F+C
Sbjct: 192 PRRLANKRIGQIKSKKFRC 210

>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors B59 Length = 208

Iteration: 1
 Score = 87.0 bits (214), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 63/238 (26%), Positives = 100/238 (42%), Gaps = 57/238 (23%)
Query: 88  CPSGCSCDGTRVDCSQRGLKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDL 147
           CPS CSC GT V+C  +G   +P  IP  TT L L  N +  +  +G+F  L +L +L L
Sbjct: 1   CPSRCSCSGTTVECYSQGRTSVPTGIPAQTTYLDLETNSLKSLP-NGVFDELTSLTQLYL 59
Query: 148 RRNQVTGIEDNAFEGENDQGCLGDNYCPPKCTCTVRVLFYDGRAGECYIAVELFSSRIRV 207
             N++  + +  F                                               
Sbjct: 60  GGNKLQSLPNGVF----------------------------------------------- 72
Query: 208 SYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLR 267
                N   S  Y +LS NQ+  L N  F  L++L +L L+ N+LQ +       L  L+
Sbjct: 73  -----NKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLK 127
Query: 268 IISLHGNDISMIPEGAFADLHAITHLAIGGNPLYCDC-GLAWLSEWVKRDYVEPGIAR 324
            + L+ N +  +P+G F  L ++ ++ +  NP  C C G+ +LSEW+ +     G+ R
Sbjct: 128 DLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGIRYLSEWINK---HSGVVR 182

>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1 Length = 440

Iteration: 1
 Score = 84.7 bits (208), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 80/314 (25%), Positives = 131/314 (41%), Gaps = 48/314 (15%)
Query: 87  ACPSGCSCDG--TRVDCSQRGLKEIPKDIPLYTTELILNDNEIGKIKSD----------- 133
            CPS CSC    ++V C ++ L+E+P  I   T  L L++N+I  IK +           
Sbjct: 34  TCPSVCSCSNQFSKVICVRKNLREVPDGISTNTRLLNLHENQIQIIKVNSFKHLRHLEIL 93
Query: 134 ------------GLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDNYCPPKCTCT 181
                       G F  L NL  L+L  N++T I + AF   +    L     P +   +
Sbjct: 94  QLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPS 153
Query: 182 --------VRVLFYDGRAGECYIAVELFSSRIRVSYY------VGNYP-----VSTMYRD 222
                   +R L         YI+   F     + Y       +   P     +     D
Sbjct: 154 YAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELD 213
Query: 223 LSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEG 282
           LS N +  +   +F  L  L +L +  +++Q I+R+A   L+SL  I+L  N+++++P  
Sbjct: 214 LSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHD 273
Query: 283 AFADLHAITHLAIGGNPLYCDCGLAWLSEWVKRDYVEPGI---ARCTEPASMRDKLLLTA 339
            F  LH +  + +  NP  C+C + WLS W+K D         ARC  P +++ + +   
Sbjct: 274 LFTPLHHLERIHLHHNPWNCNCDILWLSWWIK-DMAPSNTACCARCNTPPNLKGRYIGEL 332
Query: 340 PASSFQCKEKVSDE 353
             + F C   V  E
Sbjct: 333 DQNYFTCYAPVIVE 346

>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr) Rbc36 In Complex With H-Trisaccharide Length = 229

Iteration: 1
 Score = 82.0 bits (201), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 66/229 (28%), Positives = 92/229 (40%), Gaps = 55/229 (24%)
Query: 86  AACPSGCSCDGTRVDCSQRGLKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKL 145
           AACPS CSC GT VDC  +    +P  IP     L L+DN+I K++  G+F  L NL +L
Sbjct: 11  AACPSQCSCSGTTVDCRSKRHASVPAGIPTNAQILYLHDNQITKLEP-GVFDSLINLKEL 69
Query: 146 DLRRNQVTGIEDNAFEGENDQGCLGDNYCPPKCTCTVRVLFYDGRAGECYIAVELFSSRI 205
            L  NQ+  +    F+       L                                    
Sbjct: 70  YLGSNQLGALPVGVFDSLTQLTVL------------------------------------ 93
Query: 206 RVSYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKS 265
                           DL  NQ+  L +  F  L  L +L +  NKL  + R  +  L  
Sbjct: 94  ----------------DLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTELPR-GIERLTH 136
Query: 266 LRIISLHGNDISMIPEGAFADLHAITHLAIGGNPLYCDC-GLAWLSEWV 313
           L  ++L  N +  IP GAF  L ++TH  + GNP  C+C  + +L  WV
Sbjct: 137 LTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECRDIMYLRNWV 185

>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors A29 Length = 270

Iteration: 1
 Score = 74.3 bits (181), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 61/230 (26%), Positives = 102/230 (44%), Gaps = 14/230 (6%)
Query: 92  CSCDGTR--VDCSQRGLKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRR 149
           CSC+  +  VDCS + L  IP +IP  T +L L  N++  + S   F RL  L  L L  
Sbjct: 12  CSCNNNKNSVDCSSKKLTAIPSNIPADTKKLDLQSNKLSSLPSKA-FHRLTKLRLLYLND 70
Query: 150 NQVTGIEDNAFEGENDQGCLGDNYCPPKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSY 209
           N++  +    F+   +   L   +        + +  +D    +     EL   R ++  
Sbjct: 71  NKLQTLPAGIFKELKNLETL---WVTDNKLQALPIGVFD----QLVNLAELRLDRNQLKS 123
Query: 210 Y---VGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSL 266
               V +      Y  L  N++  L    F  L+ L +L L  N+L+ +   A   L  L
Sbjct: 124 LPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTEL 183
Query: 267 RIISLHGNDISMIPEGAFADLHAITHLAIGGNPLYCDC-GLAWLSEWVKR 315
           + + L  N +  +PEGAF  L  +  L +  NP  C C G+ ++++W+K+
Sbjct: 184 KTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCNGIIYMAKWLKK 233

>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor Vlra.R5.1 Length = 251

Iteration: 1
 Score = 73.9 bits (180), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 60/230 (26%), Positives = 100/230 (43%), Gaps = 32/230 (13%)
Query: 90  SGCSCDGTR--VDCSQRGLKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDL 147
           +GC+C+  +  VDC  + L  +P  IP  T +L L    +  + SD  F  L  L  L+L
Sbjct: 8   TGCTCNEGKKEVDCQGKSLDSVPSGIPADTEKLDLQSTGLATL-SDATFRGLTKLTWLNL 66
Query: 148 RRNQVTGIEDNAFEGENDQGCLGDNYCPPKCTCTVRVLFYDGRAGECYIAVELFSSRIRV 207
             NQ+  +    F+   + G LG                 + +     + V    +++  
Sbjct: 67  DYNQLQTLSAGVFDDLTELGTLG---------------LANNQLASLPLGVFDHLTQLDK 111
Query: 208 SYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLR 267
            Y  GN             Q+  L +  F  L+KL +L L+ N+LQ I   A   L +L+
Sbjct: 112 LYLGGN-------------QLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQ 158
Query: 268 IISLHGNDISMIPEGAFADLHAITHLAIGGNPLYCD-CGLAWLSEWVKRD 316
            +SL  N +  +P GAF  L  +  + + GN   C  C + +LS+W++ +
Sbjct: 159 TLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCSRCEILYLSQWIREN 208

>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor Vlra.R2.1 In Complex With Hen Egg Lysozyme Length = 251

Iteration: 1
 Score = 73.2 bits (178), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 60/230 (26%), Positives = 99/230 (43%), Gaps = 32/230 (13%)
Query: 90  SGCSCDGTR--VDCSQRGLKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDL 147
           +GC+C+  +  VDC  + L  +P  IP  T +L L    +  + SD  F  L  L  L+L
Sbjct: 8   TGCTCNEGKKEVDCQGKSLDSVPSGIPADTEKLDLQSTGLATL-SDATFRGLTKLTWLNL 66
Query: 148 RRNQVTGIEDNAFEGENDQGCLGDNYCPPKCTCTVRVLFYDGRAGECYIAVELFSSRIRV 207
             NQ+  +    F+   + G LG                 + +     + V    +++  
Sbjct: 67  DYNQLQTLSAGVFDDLTELGTLG---------------LANNQLASLPLGVFDHLTQLDK 111
Query: 208 SYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLR 267
            Y  GN             Q+  L +  F  L+KL +L L+ N+LQ I   A   L +L+
Sbjct: 112 LYLGGN-------------QLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQ 158
Query: 268 IISLHGNDISMIPEGAFADLHAITHLAIGGNPLYCD-CGLAWLSEWVKRD 316
            +SL  N +  +P GAF  L  +  + + GN   C  C   +LS+W++ +
Sbjct: 159 TLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCSRCETLYLSQWIREN 208

>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist Antibody Length = 286

Iteration: 1
 Score = 71.2 bits (173), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 72/283 (25%), Positives = 111/283 (39%), Gaps = 27/283 (9%)
Query: 88  CPSGCSC---DGTRVDCSQRGLKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIK 144
           CP  C C         C Q+GL+ +P  IP  +  + L+ N I  + +   F    NL  
Sbjct: 1   CPGACVCYNEPKVTTSCPQQGLQAVPTGIPASSQRIFLHGNRISYVPAAS-FQSCRNLTI 59
Query: 145 LDLRRNQVTGIEDNAFEGEN--DQGCLGDNYCPPKCTCT-------VRVLFYDGRAGECY 195
           L L  N + GI+  AF G    +Q  L DN        T       +  L  D R G   
Sbjct: 60  LWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVVDPTTFRGLGHLHTLHLD-RCGLQE 118
Query: 196 IAVELFSSRIRVSY-YVGNYPVSTM----YRDLSN--------NQIGFLSNFTFSPLSKL 242
           +   LF     + Y Y+ +  +  +    +RDL N        N+I  +    F  L  L
Sbjct: 119 LGPGLFRGLAALQYLYLQDNNLQALPDNTFRDLGNLTHLFLHGNRIPSVPEHAFRGLHSL 178
Query: 243 SQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIGGNPLYC 302
            +L+L  N +  +   A   L  L  + L  N++SM+P      L ++ +L +  NP  C
Sbjct: 179 DRLLLHQNHVARVHPHAFRDLGRLMTLYLFANNLSMLPAEVLVPLRSLQYLRLNDNPWVC 238
Query: 303 DCGLAWLSEWVKRDYVEPGIARCTEPASMRDKLLLTAPASSFQ 345
           DC    L  W+++         C  P  +  + L    AS  +
Sbjct: 239 DCRARPLWAWLQKFRGSSSEVPCNLPQRLAGRDLKRLAASDLE 281

>pdb|4D90|A Chain A, Crystal Structure Of Del-1 Egf Domains Length = 143

Iteration: 1
 Score = 70.9 bits (172), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 43/134 (32%), Positives = 63/134 (47%), Gaps = 19/134 (14%)
Query: 359 NACYKSPCTNQGVCEP-LPERQYQCRCTPGYHGQHCEFMIDA------------CYGNPC 405
           + C  +PC N G+C P L +  + C C  G+   +C  +++             C  NPC
Sbjct: 1   DICDPNPCENGGICLPGLADGSFSCECPDGFTDPNCSSVVEVASDEEEPTSAGPCTPNPC 60
Query: 406 RNSGTCKLLEEGR------FNCECAPGYTGDRCEINIDDCLSHKCENNATCVDLIQAYEC 459
            N GTC++ E  R      + C+C  G+ G  C+ NI++C    C+N   C DL+  Y C
Sbjct: 61  HNGGTCEISEAYRGDTFIGYVCKCPRGFNGIHCQHNINECEVEPCKNGGICTDLVANYSC 120
Query: 460 RCAPGFQGEFCQTK 473
            C   F G  CQ K
Sbjct: 121 ECPGEFMGRNCQYK 134

>pdb|4D90|A Chain A, Crystal Structure Of Del-1 Egf Domains Length = 143

Iteration: 1
 Score = 63.2 bits (152), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 47/130 (36%), Positives = 58/130 (44%), Gaps = 22/130 (16%)
Query: 398 DACYGNPCRNSGTC-KLLEEGRFNCECAPGYTGDRC----EINIDD--------CLSHKC 444
           D C  NPC N G C   L +G F+CEC  G+T   C    E+  D+        C  + C
Sbjct: 1   DICDPNPCENGGICLPGLADGSFSCECPDGFTDPNCSSVVEVASDEEEPTSAGPCTPNPC 60
Query: 445 ENNATCV-------DLIQAYECRCAPGFQGEFCQTKTPFCAGEYNPCRNGARCLDHFSHY 497
            N  TC        D    Y C+C  GF G  CQ     C  E  PC+NG  C D  ++Y
Sbjct: 61  HNGGTCEISEAYRGDTFIGYVCKCPRGFNGIHCQHNINEC--EVEPCKNGGICTDLVANY 118
Query: 498 TCECTPGFSG 507
           +CEC   F G
Sbjct: 119 SCECPGEFMG 128

>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding Domain Reveals A Convergent Recognition Scaffold Mediating Inhibition Of Myelination Length = 285

Iteration: 1
 Score = 70.9 bits (172), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 72/282 (25%), Positives = 113/282 (40%), Gaps = 25/282 (8%)
Query: 88  CPSGCSC---DGTRVDCSQRGLKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIK 144
           CP  C C         C Q+GL+ +P  IP  +  + L+ N I  + +   F    NL  
Sbjct: 2   CPGACVCYNEPKVTTSCPQQGLQAVPVGIPAASQRIFLHGNRISHVPAAS-FRACRNLTI 60
Query: 145 LDLRRNQVTGIEDNAFEGEN--DQGCLGDN-----YCPPKCTCTVRV-LFYDGRAGECYI 196
           L L  N +  I+  AF G    +Q  L DN       P       R+   +  R G   +
Sbjct: 61  LWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQEL 120
Query: 197 AVELFSSRIRVSY-YVGNYPVSTM----YRDLSN--------NQIGFLSNFTFSPLSKLS 243
              LF     + Y Y+ +  +  +    +RDL N        N+I  +    F  L  L 
Sbjct: 121 GPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLD 180
Query: 244 QLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIGGNPLYCD 303
           +L+L  N++  +   A   L  L  + L  N++S +P  A A L A+ +L +  NP  CD
Sbjct: 181 RLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCD 240
Query: 304 CGLAWLSEWVKRDYVEPGIARCTEPASMRDKLLLTAPASSFQ 345
           C    L  W+++         C+ P  +  + L    A+  Q
Sbjct: 241 CRARPLWAWLQKFRGSSSEVPCSLPQRLAGRDLKRLAANDLQ 282

>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor Length = 285

Iteration: 1
 Score = 70.5 bits (171), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 72/282 (25%), Positives = 113/282 (40%), Gaps = 25/282 (8%)
Query: 88  CPSGCSC---DGTRVDCSQRGLKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIK 144
           CP  C C         C Q+GL+ +P  IP  +  + L+ N I  + +   F    NL  
Sbjct: 1   CPGACVCYNEPKVTTSCPQQGLQAVPVGIPAASQRIFLHGNRISHVPAAS-FRACRNLTI 59
Query: 145 LDLRRNQVTGIEDNAFEGEN--DQGCLGDN-----YCPPKCTCTVRV-LFYDGRAGECYI 196
           L L  N +  I+  AF G    +Q  L DN       P       R+   +  R G   +
Sbjct: 60  LWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQEL 119
Query: 197 AVELFSSRIRVSY-YVGNYPVSTM----YRDLSN--------NQIGFLSNFTFSPLSKLS 243
              LF     + Y Y+ +  +  +    +RDL N        N+I  +    F  L  L 
Sbjct: 120 GPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLD 179
Query: 244 QLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIGGNPLYCD 303
           +L+L  N++  +   A   L  L  + L  N++S +P  A A L A+ +L +  NP  CD
Sbjct: 180 RLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCD 239
Query: 304 CGLAWLSEWVKRDYVEPGIARCTEPASMRDKLLLTAPASSFQ 345
           C    L  W+++         C+ P  +  + L    A+  Q
Sbjct: 240 CRARPLWAWLQKFRGSSSEVPCSLPQRLAGRDLKRLAANDLQ 281

>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In Complex With A Protein Antigen Length = 178

Iteration: 1
 Score = 70.1 bits (170), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 40/89 (44%), Positives = 52/89 (58%), Gaps = 3/89 (3%)
Query: 86  AACPSGCSCDGTRVDCSQRGLKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKL 145
           +ACPS CSC GT VDCS + L  +P  IP  T  L L DN+I K++  G+F RL  L +L
Sbjct: 9   SACPSQCSCSGTTVDCSGKSLASVPTGIPTTTQVLYLYDNQITKLEP-GVFDRLTQLTRL 67
Query: 146 DLRRNQVTGIEDNAFE--GENDQGCLGDN 172
           DL  NQ+T +    F+   +  Q  L DN
Sbjct: 68  DLDNNQLTVLPAGVFDKLTQLTQLSLNDN 96

>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In Complex With A Protein Antigen Length = 178

Iteration: 1
 Score = 62.0 bits (149), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 38/121 (31%), Positives = 61/121 (50%), Gaps = 9/121 (7%)
Query: 215 PVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGN 274
           P +T    L +NQI  L    F  L++L++L L  N+L  +       L  L  +SL+ N
Sbjct: 37  PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 96
Query: 275 DISMIPEGAFADLHAITHLAIGGNPLYCDCG-LAWLSEWVKRD--------YVEPGIARC 325
            +  IP GAF +L ++TH+ +  NP  C C  + +LS W+ +          ++P  ARC
Sbjct: 97  QLKSIPRGAFDNLKSLTHIWLLNNPWDCACSDILYLSRWISQHPGLVFGYLNLDPDSARC 156
Query: 326 T 326
           +
Sbjct: 157 S 157

>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Length = 170

Iteration: 1
 Score = 69.7 bits (169), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 40/88 (45%), Positives = 51/88 (57%), Gaps = 3/88 (3%)
Query: 87  ACPSGCSCDGTRVDCSQRGLKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKLD 146
           ACPS CSC GT VDCS + L  +P  IP  T  L L DN+I K++  G+F RL  L +LD
Sbjct: 2   ACPSQCSCSGTTVDCSGKSLASVPTGIPTTTQVLYLYDNQITKLEP-GVFDRLTQLTRLD 60
Query: 147 LRRNQVTGIEDNAFE--GENDQGCLGDN 172
           L  NQ+T +    F+   +  Q  L DN
Sbjct: 61  LDNNQLTVLPAGVFDKLTQLTQLSLNDN 88

>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Length = 170

Iteration: 1
 Score = 62.4 bits (150), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 38/121 (31%), Positives = 61/121 (50%), Gaps = 9/121 (7%)
Query: 215 PVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGN 274
           P +T    L +NQI  L    F  L++L++L L  N+L  +       L  L  +SL+ N
Sbjct: 29  PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88
Query: 275 DISMIPEGAFADLHAITHLAIGGNPLYCDCG-LAWLSEWVKRD--------YVEPGIARC 325
            +  IP GAF +L ++TH+ +  NP  C C  + +LS W+ +          ++P  ARC
Sbjct: 89  QLKSIPRGAFDNLKSLTHIWLLNNPWDCACSDILYLSRWISQHPGLVFGYLNLDPDSARC 148
Query: 326 T 326
           +
Sbjct: 149 S 149

>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant In Complex With A Protein Antigen Length = 170

Iteration: 1
 Score = 67.8 bits (164), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 36/75 (48%), Positives = 45/75 (60%), Gaps = 1/75 (1%)
Query: 87  ACPSGCSCDGTRVDCSQRGLKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKLD 146
           ACPS CSC GT VDCS + L  +P  IP  T  L L DN I K++  G+F RL  L +LD
Sbjct: 2   ACPSQCSCSGTTVDCSGKSLASVPTGIPTTTQVLYLYDNRITKLEP-GVFDRLTQLTRLD 60
Query: 147 LRRNQVTGIEDNAFE 161
           L  NQ+T +    F+
Sbjct: 61  LDNNQLTVLPAGVFD 75

>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant In Complex With A Protein Antigen Length = 170

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 42/143 (29%), Positives = 68/143 (47%), Gaps = 16/143 (11%)
Query: 174 CPPKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSN 233
           CP +C+C+       G   +C       S +   S   G  P +T    L +N+I  L  
Sbjct: 3   CPSQCSCS-------GTTVDC-------SGKSLASVPTG-IPTTTQVLYLYDNRITKLEP 47
Query: 234 FTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHL 293
             F  L++L++L L  N+L  +       L  L  +SL+ N +  IP GAF +L ++TH+
Sbjct: 48  GVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLRSLTHI 107
Query: 294 AIGGNPLYCDCG-LAWLSEWVKR 315
            +  NP  C C  + +LS W+ +
Sbjct: 108 WLLNNPWDCACSDILYLSRWISQ 130

>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors B61 Length = 177

Iteration: 1
 Score = 66.6 bits (161), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 58/241 (24%), Positives = 90/241 (37%), Gaps = 79/241 (32%)
Query: 88  CPSGCSCDGTRVDCSQRGLKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDL 147
           CPS CSC GT + C+ +GL  +P  IP   T L L  N++  +   G+F +L  L KL L
Sbjct: 1   CPSRCSCSGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQSL-PHGVFDKLTQLTKLSL 59
Query: 148 RRNQVTGIEDNAFEGENDQGCLGDNYCPPKCTCTVRVLFYDGRAGECYIAVELFSSRIRV 207
            +NQ+  + D  F+                   T   + Y                    
Sbjct: 60  SQNQIQSLPDGVFDK-----------------LTKLTILY-------------------- 82
Query: 208 SYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLR 267
                          L  N++  L N  F  L++L +L L  N+L+              
Sbjct: 83  ---------------LHENKLQSLPNGVFDKLTQLKELALDTNQLKS------------- 114
Query: 268 IISLHGNDISMIPEGAFADLHAITHLAIGGNPLYCDC-GLAWLSEWV-KRDYVEPGIARC 325
                      +P+G F  L ++  + +  NP  C C  + +LS W+ K    E G A+C
Sbjct: 115 -----------VPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQGSAKC 163
Query: 326 T 326
           +
Sbjct: 164 S 164

>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin, The Archetypal Small Leucine-Rich Repeat Proteoglycan Length = 330

Iteration: 1
 Score = 65.9 bits (159), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 82/299 (27%), Positives = 124/299 (41%), Gaps = 63/299 (21%)
Query: 87  ACPSGCSCDGTRVDCSQRGLKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKLD 146
            CP  C C    V CS  GL+++PKD+P  T  L L +N+I +IK DG F  L NL  L 
Sbjct: 24  VCPFRCQCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIK-DGDFKNLKNLHTLI 82
Query: 147 LRRNQVTGIEDNAFEG--ENDQGCLGDNYC---PPKCTCT-------------VRVLFYD 188
           L  N+++ I   AF    + ++  L  N     P K   T             VR   ++
Sbjct: 83  LINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFN 142
Query: 189 GRAGECYIAVEL--------------FSSRIRVSYY-VGNYPVSTMYR---------DLS 224
           G      I VEL              F    ++SY  + +  ++T+ +          L 
Sbjct: 143 GL--NQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLD 200
Query: 225 NNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAF 284
            N+I  +   +   L+ L++L LS+N +  +D  +LA    LR + L+ N +  +P G  
Sbjct: 201 GNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVP-GGL 259
Query: 285 AD--------LHAITHLAIGGN----PLYCD-----CGLAWLSEWVKRDYVEPGIARCT 326
           AD        LH     AIG N    P Y        G++  S  V+   ++P   RC 
Sbjct: 260 ADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCV 318

>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1 Length = 329

Iteration: 1
 Score = 65.9 bits (159), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 82/299 (27%), Positives = 124/299 (41%), Gaps = 63/299 (21%)
Query: 87  ACPSGCSCDGTRVDCSQRGLKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKLD 146
            CP  C C    V CS  GL+++PKD+P  T  L L +N+I +IK DG F  L NL  L 
Sbjct: 24  VCPFRCQCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIK-DGDFKNLKNLHTLI 82
Query: 147 LRRNQVTGIEDNAFEG--ENDQGCLGDNYC---PPKCTCT-------------VRVLFYD 188
           L  N+++ I   AF    + ++  L  N     P K   T             VR   ++
Sbjct: 83  LINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFN 142
Query: 189 GRAGECYIAVEL--------------FSSRIRVSYY-VGNYPVSTMYR---------DLS 224
           G      I VEL              F    ++SY  + +  ++T+ +          L 
Sbjct: 143 GL--NQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLD 200
Query: 225 NNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAF 284
            N+I  +   +   L+ L++L LS+N +  +D  +LA    LR + L+ N +  +P G  
Sbjct: 201 GNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVP-GGL 259
Query: 285 AD--------LHAITHLAIGGN----PLYCD-----CGLAWLSEWVKRDYVEPGIARCT 326
           AD        LH     AIG N    P Y        G++  S  V+   ++P   RC 
Sbjct: 260 ADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCV 318

>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte Receptors Of Jawless Vertebrates By Module Engineering Length = 272

Iteration: 1
 Score = 65.1 bits (157), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 34/106 (32%), Positives = 59/106 (55%), Gaps = 4/106 (3%)
Query: 220 YRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMI 279
           Y +L++NQ+  L    F  L+ L++L LSYN+LQ +       L  L+ + L+ N +  +
Sbjct: 137 YLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSV 196
Query: 280 PEGAFADLHAITHLAIGGNPLYCDC-GLAWLSEWVKRDYVEPGIAR 324
           P+G F  L ++ ++ +  NP  C C G+ +LSEW+ +     G+ R
Sbjct: 197 PDGVFDRLTSLQYIWLHDNPWDCTCPGIRYLSEWINK---HSGVVR 239

>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein Amigo-1 Length = 361

Iteration: 1
 Score = 64.7 bits (156), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 59/236 (25%), Positives = 93/236 (39%), Gaps = 34/236 (14%)
Query: 86  AACPSGCSCDGTRVDCSQRGLKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKL 145
            +CP+ C C    + CS++ L  +P+ +P YT  L L+ N + +++++    RL NL  L
Sbjct: 10  VSCPANCLCASNILSCSKQQLPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSL 69
Query: 146 DLRRNQVTGIEDNAFEGENDQGCLGDNYCPPKCTCTVRVLFYDGRAGECYIAVELFSSRI 205
            L  N +  I   AF    +   L  +            LF D +A E  +         
Sbjct: 70  LLSHNHLNFISSEAFVPVPNLRYL--DLSSNHLHTLDEFLFSDLQALEVLL--------- 118
Query: 206 RVSYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALA---G 262
                            L NN I  +    F  +++L +L LS N++     + +     
Sbjct: 119 -----------------LYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNK 161
Query: 263 LKSLRIISLHGNDISMIPEGAFADLHAITH--LAIGGNPLYCDCGLAWL-SEWVKR 315
           L  L ++ L  N +  +P      L A     L +  NPL CDC L  L S W  R
Sbjct: 162 LPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLECDCKLYQLFSHWQYR 217

>pdb|3V44|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Zebrafish Tlr5 Length = 407

Iteration: 1
 Score = 63.5 bits (153), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 70/261 (26%), Positives = 111/261 (42%), Gaps = 48/261 (18%)
Query: 114 PLYTTE-LILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGI--EDNA-FEGEN----- 164
           PL + E L+L DN I KI+    F  +     LDL  N+V  I  ED   F+G++     
Sbjct: 127 PLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLR 186
Query: 165 ---------DQGCLGDNYC-PPKCTCTVRVLFYDGRAGECYIAVELF---------SSRI 205
                    ++  LG   C  P    ++  L   G   +  +A   F         S  +
Sbjct: 187 LSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLIL 246
Query: 206 RVSYYVGNYPVSTMYRD------------------LSNNQIGFLSNFTFSPLSKLSQLIL 247
             SY +G+    T ++D                  LS ++I  L    FS  + L QL L
Sbjct: 247 SNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTL 306
Query: 248 SYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIGGNPLYCDC-GL 306
           + N++  ID +A  GL  L+ ++L  N +  +P+G F  L ++  + +  NP  C C  +
Sbjct: 307 AQNEINKIDDNAFWGLTHLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 366
Query: 307 AWLSEWV-KRDYVEPGIARCT 326
            +LS W+ K    E G A+C+
Sbjct: 367 DYLSRWLNKNSQKEQGSAKCS 387

>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein Length = 332

Iteration: 1
 Score = 62.0 bits (149), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 73/290 (25%), Positives = 120/290 (41%), Gaps = 54/290 (18%)
Query: 86  AACPSGCSCDGTRVDCSQRGLKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKL 145
           A CP GC C    V CS  GLK +PK+I   TT L L +N+I +++ D   G L +L  L
Sbjct: 25  AMCPFGCHCHLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKG-LQHLYAL 83
Query: 146 DLRRNQVTGIEDNAFE--GENDQGCLGDNY---CPPKC-TCTVRVLFYDGRAGEC----- 194
            L  N+++ I + AF    +  +  +  N+    PP   +  V +  +D R  +      
Sbjct: 84  VLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLPSSLVELRIHDNRIRKVPKGVF 143
Query: 195 -------------------------YIAVELFSSRIRVSYYVG---NYPVSTMYRDLSNN 226
                                    +  ++L   RI  +   G   + P +     L +N
Sbjct: 144 SGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHN 203
Query: 227 QIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFAD 286
           +I  +        SKL +L L +N+++ I+  +L+ L +LR + L  N +S +P G   D
Sbjct: 204 KIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAG-LPD 262
Query: 287 LHAITHLAIGGNPL-------YCDCGLAWLSEWVKRDYVEPGIARCTEPA 329
           L  +  + +  N +       +C  G       VKR Y   GI+    P 
Sbjct: 263 LKLLQVVYLHTNNITKVGVNDFCPVGFG-----VKRAYYN-GISLFNNPV 306

>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain Length = 477

Iteration: 1
 Score = 60.1 bits (144), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 49/197 (24%), Positives = 81/197 (41%), Gaps = 17/197 (8%)
Query: 119 ELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDNYCPPKC 178
           +L L    +  I ++ L   L  LI L LR   +  I D +F+       L  ++ P   
Sbjct: 156 QLTLEKCNLTSIPTEAL-SHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWP--- 211
Query: 179 TCTVRVLFYDGRAGECYIAVELFSSRIR------VSYYVGNYPVSTMYRDLSNNQIGFLS 232
                  + D     C   + L S  I       V Y    + V   + +LS N I  + 
Sbjct: 212 -------YLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIE 264
Query: 233 NFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITH 292
                 L +L ++ L   +L  ++  A  GL  LR++++ GN ++ + E  F  +  +  
Sbjct: 265 GSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLET 324
Query: 293 LAIGGNPLYCDCGLAWL 309
           L +  NPL CDC L W+
Sbjct: 325 LILDSNPLACDCRLLWV 341

>pdb|3TWI|D Chain D, Variable Lymphocyte Receptor Recognition Of The Immunodominant Glycoprotein Of Bacillus Anthracis Spores Length = 179

Iteration: 1
 Score = 60.1 bits (144), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 33/76 (43%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Query: 86  AACPSGCSCDGTRVDCSQRGLKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKL 145
           AACPS CSC GT V+C +R L  +P  IP  T  L L  N+I K++  G+F  L  L  L
Sbjct: 11  AACPSQCSCSGTTVNCQERSLASVPAGIPTTTQVLHLYINQITKLEP-GVFDSLTQLTYL 69
Query: 146 DLRRNQVTGIEDNAFE 161
           +L  NQ+T +    F+
Sbjct: 70  NLAVNQLTALPVGVFD 85

>pdb|3TWI|D Chain D, Variable Lymphocyte Receptor Recognition Of The Immunodominant Glycoprotein Of Bacillus Anthracis Spores Length = 179

Iteration: 1
 Score = 55.5 bits (132), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 41/141 (29%), Positives = 63/141 (44%), Gaps = 16/141 (11%)
Query: 174 CPPKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSN 233
           CP +C+C+       G    C         R   S   G  P +T    L  NQI  L  
Sbjct: 13  CPSQCSCS-------GTTVNC-------QERSLASVPAG-IPTTTQVLHLYINQITKLEP 57
Query: 234 FTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHL 293
             F  L++L+ L L+ N+L  +       L  L  ++LH N +  IP G F +L ++TH+
Sbjct: 58  GVFDSLTQLTYLNLAVNQLTALPVGVFDKLTKLTHLALHINQLKSIPMGVFDNLKSLTHI 117
Query: 294 AIGGNPLYCDCG-LAWLSEWV 313
            +  NP  C+C  + +L  W+
Sbjct: 118 YLFNNPWDCECSDILYLKNWI 138

>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor 2913 Ectodomain Length = 174

Iteration: 1
 Score = 59.3 bits (142), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 43/141 (30%), Positives = 60/141 (42%), Gaps = 16/141 (11%)
Query: 174 CPPKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSN 233
           CP +C+C       D     C          IR++      P       L+NNQI  L  
Sbjct: 6   CPSQCSC-------DQTLVNC--------QNIRLASVPAGIPTDKQRLWLNNNQITKLEP 50
Query: 234 FTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHL 293
             F  L  L QL  + NKL  I       L  L  + L+ N +  IP GAF +L ++TH+
Sbjct: 51  GVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHI 110
Query: 294 AIGGNPLYCDC-GLAWLSEWV 313
            +  NP  C+C  + +L  WV
Sbjct: 111 YLYNNPWDCECRDIMYLRNWV 131

>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte Receptors Of Jawless Vertebrates By Module Engineering Length = 279

Iteration: 1
 Score = 58.5 bits (140), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 35/116 (30%), Positives = 59/116 (50%), Gaps = 9/116 (7%)
Query: 220 YRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMI 279
           Y  L +NQ+  L    F  L+ L++L L  N+LQ +       L  L+ +SL+ N +  +
Sbjct: 137 YLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLNDNQLKSV 196
Query: 280 PEGAFADLHAITHLAIGGNPLYCDCG-LAWLSEWVKRD--------YVEPGIARCT 326
           P+G F  L ++TH+ +  NP  C C  + +LS W+ +          ++P  ARC+
Sbjct: 197 PDGVFDRLTSLTHIWLLNNPWDCACSDILYLSRWISQHPGLVFGYLNLDPDSARCS 252

>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish Tlr5 In Complex With Salmonella Flagellin Length = 455

Iteration: 1
 Score = 57.0 bits (136), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 34/107 (31%), Positives = 58/107 (54%), Gaps = 2/107 (1%)
Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPE 281
           +LS N +G + +  F  L KL  L LSYN ++ +   +  GL +L+ ++L  N +  +P+
Sbjct: 329 NLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPD 388
Query: 282 GAFADLHAITHLAIGGNPLYCDC-GLAWLSEWV-KRDYVEPGIARCT 326
           G F  L ++  + +  NP  C C  + +LS W+ K    E G A+C+
Sbjct: 389 GIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQGSAKCS 435

>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And Hagfish Vlrb.61 Length = 306

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 53/219 (24%), Positives = 92/219 (42%), Gaps = 12/219 (5%)
Query: 88  CPSGCSCDGTRVDCSQRGLKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDL 147
           CPS CSC GT + C+ +GL  +P  IP   T L L  N++  +   G+F +L  L KL L
Sbjct: 1   CPSRCSCSGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLP-HGVFDKLTQLTKLSL 59
Query: 148 RRNQVTGIEDNAFEG---ENDQGCLGDNYCPPKCTCTVRVLF-YDGRAGECYIAVELFSS 203
             N +      +F+G   ++D G     Y        + +   + G     ++  +  + 
Sbjct: 60  SSNGL------SFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNL 113
Query: 204 RIRVSYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQ-CIDRDALAG 262
           +    + V     + +Y D+S+       N  F+ LS L  L ++ N  Q     D    
Sbjct: 114 KQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTE 173
Query: 263 LKSLRIISLHGNDISMIPEGAFADLHAITHLAIGGNPLY 301
           L++L  + L    +  +   AF  L ++  L +  N  +
Sbjct: 174 LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFF 212

>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding Domain Of Glycoprotein Ib Alpha Length = 290

Iteration: 1
 Score = 53.1 bits (126), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 58/241 (24%), Positives = 95/241 (39%), Gaps = 57/241 (23%)
Query: 98  RVDCSQRGLKEIPKDIPLYTTELILNDN------------------------EIGKIKSD 133
            V+C +R L  +P D+P  TT L L++N                        E+ K++ D
Sbjct: 14  EVNCDKRQLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVD 73
Query: 134 GLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDNYCPPKCTCTVRVLFYDGRAGE 193
           G    LP L  LDL  NQ+  +                    P    T+  L     +  
Sbjct: 74  G---TLPVLGTLDLSHNQLQSL--------------------PLLGQTLPALTVLDVSFN 110
Query: 194 CYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQ 253
              ++ L + R       G   +  +Y  L  N++  L     +P  KL +L L+ N+L 
Sbjct: 111 RLTSLPLGALR-------GLGELQELY--LKGNELKTLPPGLLTPTPKLEKLSLANNQLT 161
Query: 254 CIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIGGNPLYCDCGLAWLSEWV 313
            +    L GL++L  + L  N +  IP+G F   H +    + GNP  C+C + +   W+
Sbjct: 162 ELPAGLLNGLENLDTLLLQENSLYTIPKGFFGS-HLLPFAFLHGNPWLCNCEILYFRRWL 220
Query: 314 K 314
           +
Sbjct: 221 Q 221

>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha And The Von Willebrand Factor A1 Domain Length = 290

Iteration: 1
 Score = 53.1 bits (126), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 58/241 (24%), Positives = 95/241 (39%), Gaps = 57/241 (23%)
Query: 98  RVDCSQRGLKEIPKDIPLYTTELILNDN------------------------EIGKIKSD 133
            V+C +R L  +P D+P  TT L L++N                        E+ K++ D
Sbjct: 14  EVNCDKRQLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVD 73
Query: 134 GLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDNYCPPKCTCTVRVLFYDGRAGE 193
           G    LP L  LDL  NQ+  +                    P    T+  L     +  
Sbjct: 74  G---TLPVLGTLDLSHNQLQSL--------------------PLLGQTLPALTVLDVSFN 110
Query: 194 CYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQ 253
              ++ L + R       G   +  +Y  L  N++  L     +P  KL +L L+ N+L 
Sbjct: 111 RLTSLPLGALR-------GLGELQELY--LKGNELKTLPPGLLTPTPKLEKLSLANNQLT 161
Query: 254 CIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIGGNPLYCDCGLAWLSEWV 313
            +    L GL++L  + L  N +  IP+G F   H +    + GNP  C+C + +   W+
Sbjct: 162 ELPAGLLNGLENLDTLLLQENSLYTIPKGFFGS-HLLPFAFLHGNPWLCNCEILYFRRWL 220
Query: 314 K 314
           +
Sbjct: 221 Q 221

>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e Length = 278

Iteration: 1
 Score = 52.8 bits (125), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 64/260 (24%), Positives = 107/260 (41%), Gaps = 43/260 (16%)
Query: 101 CSQRGLKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAF 160
           C +    +IP ++P  T  L L+ N +  + S   F   P L  LDL R ++  IED A+
Sbjct: 15  CEELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFS-FPELQVLDLSRCEIQTIEDGAY 73
Query: 161 EGENDQGCLGDNYCPPKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMY 220
           +  +    L     P +        F    + +  +AVE   + +       N+P+  + 
Sbjct: 74  QSLSHLSTLILTGNPIQSLALGA--FSGLSSLQKLVAVETNLASLE------NFPIGHLK 125
Query: 221 R----DLSNNQI-GFLSNFTFSPLSKLSQLILSYNKLQ---CIDRDAL------------ 260
                ++++N I  F     FS L+ L  L LS NK+Q   C D   L            
Sbjct: 126 TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDL 185
Query: 261 ----------AGLKSLRI--ISLHGNDISMIPEGAFADLHAITHLAIGGNPLYCDC-GLA 307
                        K +R+  ++L  N +  +P+G F  L ++  + +  NP  C C  + 
Sbjct: 186 SLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRID 245
Query: 308 WLSEWV-KRDYVEPGIARCT 326
           +LS W+ K    E G A+C+
Sbjct: 246 YLSRWLNKNSQKEQGSAKCS 265

>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha- Botrocetin Complex Length = 265

Iteration: 1
 Score = 52.8 bits (125), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 58/241 (24%), Positives = 95/241 (39%), Gaps = 57/241 (23%)
Query: 98  RVDCSQRGLKEIPKDIPLYTTELILNDN------------------------EIGKIKSD 133
            V+C +R L  +P D+P  TT L L++N                        E+ K++ D
Sbjct: 14  EVNCDKRQLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVD 73
Query: 134 GLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDNYCPPKCTCTVRVLFYDGRAGE 193
           G    LP L  LDL  NQ+  +                    P    T+  L     +  
Sbjct: 74  G---TLPVLGTLDLSHNQLQSL--------------------PLLGQTLPALTVLDVSFN 110
Query: 194 CYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQ 253
              ++ L + R       G   +  +Y  L  N++  L     +P  KL +L L+ N+L 
Sbjct: 111 RLTSLPLGALR-------GLGELQELY--LKGNELKTLPPGLLTPTPKLEKLSLANNQLT 161
Query: 254 CIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIGGNPLYCDCGLAWLSEWV 313
            +    L GL++L  + L  N +  IP+G F   H +    + GNP  C+C + +   W+
Sbjct: 162 ELPAGLLNGLENLDTLLLQENSLYTIPKGFFGS-HLLPFAFLHGNPWLCNCEILYFRRWL 220
Query: 314 K 314
           +
Sbjct: 221 Q 221

>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound Peptide Inhibitor Length = 269

Iteration: 1
 Score = 52.8 bits (125), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 58/241 (24%), Positives = 95/241 (39%), Gaps = 57/241 (23%)
Query: 98  RVDCSQRGLKEIPKDIPLYTTELILNDN------------------------EIGKIKSD 133
            V+C +R L  +P D+P  TT L L++N                        E+ K++ D
Sbjct: 14  EVNCDKRQLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVD 73
Query: 134 GLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDNYCPPKCTCTVRVLFYDGRAGE 193
           G    LP L  LDL  NQ+  +                    P    T+  L     +  
Sbjct: 74  G---TLPVLGTLDLSHNQLQSL--------------------PLLGQTLPALTVLDVSFN 110
Query: 194 CYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQ 253
              ++ L + R       G   +  +Y  L  N++  L     +P  KL +L L+ N+L 
Sbjct: 111 RLTSLPLGALR-------GLGELQELY--LKGNELKTLPPGLLTPTPKLEKLSLANNQLT 161
Query: 254 CIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIGGNPLYCDCGLAWLSEWV 313
            +    L GL++L  + L  N +  IP+G F   H +    + GNP  C+C + +   W+
Sbjct: 162 ELPAGLLNGLENLDTLLLQENSLYTIPKGFFGS-HLLPFAFLHGNPWLCNCEILYFRRWL 220
Query: 314 K 314
           +
Sbjct: 221 Q 221

>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran Complex Length = 279

Iteration: 1
 Score = 52.4 bits (124), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 64/260 (24%), Positives = 107/260 (41%), Gaps = 43/260 (16%)
Query: 101 CSQRGLKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAF 160
           C +    +IP ++P  T  L L+ N +  + S   F   P L  LDL R ++  IED A+
Sbjct: 16  CMELNFYKIPDNLPFSTKNLDLSWNPLRHLGSYSFFS-FPELQVLDLSRCEIQTIEDGAY 74
Query: 161 EGENDQGCLGDNYCPPKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMY 220
           +  +    L     P +        F    + +  +AVE   + +       N+P+  + 
Sbjct: 75  QSLSHLSTLILTGNPIQSLALGA--FSGLSSLQKLVAVETNLASLE------NFPIGHLK 126
Query: 221 R----DLSNNQI-GFLSNFTFSPLSKLSQLILSYNKLQ---CIDRDAL------------ 260
                ++++N I  F     FS L+ L  L LS NK+Q   C D   L            
Sbjct: 127 TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDL 186
Query: 261 ----------AGLKSLRI--ISLHGNDISMIPEGAFADLHAITHLAIGGNPLYCDC-GLA 307
                        K +R+  ++L  N +  +P+G F  L ++  + +  NP  C C  + 
Sbjct: 187 SLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRID 246
Query: 308 WLSEWV-KRDYVEPGIARCT 326
           +LS W+ K    E G A+C+
Sbjct: 247 YLSRWLNKNSQKEQGSAKCS 266

>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w Length = 278

Iteration: 1
 Score = 52.0 bits (123), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 64/260 (24%), Positives = 107/260 (41%), Gaps = 43/260 (16%)
Query: 101 CSQRGLKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAF 160
           C +    +IP ++P  T  L L+ N +  + S   F   P L  LDL R ++  IED A+
Sbjct: 15  CMELNFYKIPDNLPFSTKNLDLSWNPLRHLGSYSFFS-FPELQVLDLSRCEIQTIEDGAY 73
Query: 161 EGENDQGCLGDNYCPPKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMY 220
           +  +    L     P +        F    + +  +AVE   + +       N+P+  + 
Sbjct: 74  QSLSHLSTLILTGNPIQSLALGA--FSGLSSLQKLVAVETNLASLE------NFPIGHLK 125
Query: 221 R----DLSNNQI-GFLSNFTFSPLSKLSQLILSYNKLQ---CIDRDAL------------ 260
                ++++N I  F     FS L+ L  L LS NK+Q   C D   L            
Sbjct: 126 TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDL 185
Query: 261 ----------AGLKSLRI--ISLHGNDISMIPEGAFADLHAITHLAIGGNPLYCDC-GLA 307
                        K +R+  ++L  N +  +P+G F  L ++  + +  NP  C C  + 
Sbjct: 186 SLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRID 245
Query: 308 WLSEWV-KRDYVEPGIARCT 326
           +LS W+ K    E G A+C+
Sbjct: 246 YLSRWLNKNSQKEQGSAKCS 265

>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And Hagfish Vlrb.61 Length = 276

Iteration: 1
 Score = 52.0 bits (123), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 64/260 (24%), Positives = 107/260 (41%), Gaps = 43/260 (16%)
Query: 101 CSQRGLKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAF 160
           C +    +IP ++P  T  L L+ N +  + S   F   P L  LDL R ++  IED A+
Sbjct: 14  CMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFS-FPELQVLDLSRCEIQTIEDGAY 72
Query: 161 EGENDQGCLGDNYCPPKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMY 220
           +  +    L     P +        F    + +  +AVE   + +       N+P+  + 
Sbjct: 73  QSLSHLSTLILTGNPIQSLALGA--FSGLSSLQKLVAVETNLASLE------NFPIGHLK 124
Query: 221 R----DLSNNQI-GFLSNFTFSPLSKLSQLILSYNKLQ---CIDRDAL------------ 260
                ++++N I  F     FS L+ L  L LS NK+Q   C D   L            
Sbjct: 125 TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDL 184
Query: 261 ----------AGLKSLRI--ISLHGNDISMIPEGAFADLHAITHLAIGGNPLYCDC-GLA 307
                        K +R+  ++L  N +  +P+G F  L ++  + +  NP  C C  + 
Sbjct: 185 SLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRID 244
Query: 308 WLSEWV-KRDYVEPGIARCT 326
           +LS W+ K    E G A+C+
Sbjct: 245 YLSRWLNKNSQKEQGSAKCS 264

>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l Length = 279

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 63/260 (24%), Positives = 107/260 (41%), Gaps = 43/260 (16%)
Query: 101 CSQRGLKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAF 160
           C +    +IP ++P  T  L L+ N +  + S   F   P L  LDL R ++  IED A+
Sbjct: 16  CMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFS-FPELQVLDLSRCEIQTIEDGAY 74
Query: 161 EGENDQGCLGDNYCPPKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMY 220
           +  +    L     P +        F    + +  +A+E   + +       N+P+  + 
Sbjct: 75  QSLSHLSTLILTGNPIQSLALGA--FSGLSSLQKLVALETNLASLE------NFPIGHLK 126
Query: 221 R----DLSNNQI-GFLSNFTFSPLSKLSQLILSYNKLQ---CIDRDAL------------ 260
                ++++N I  F     FS L+ L  L LS NK+Q   C D   L            
Sbjct: 127 TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDL 186
Query: 261 ----------AGLKSLRI--ISLHGNDISMIPEGAFADLHAITHLAIGGNPLYCDC-GLA 307
                        K +R+  ++L  N +  +P+G F  L ++  + +  NP  C C  + 
Sbjct: 187 SLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRID 246
Query: 308 WLSEWV-KRDYVEPGIARCT 326
           +LS W+ K    E G A+C+
Sbjct: 247 YLSRWLNKNSQKEQGSAKCS 266

>pdb|2YGQ|A Chain A, Wif Domain-Epidermal Growth Factor (Egf)-Like Domains 1-3 Of Human Wnt Inhibitory Factor 1 In Complex With 1,2-Dipalmitoylphosphatidylcholine Length = 324

Iteration: 1
 Score = 49.3 bits (116), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 51/143 (35%), Positives = 66/143 (46%), Gaps = 27/143 (18%)
Query: 366 CTNQGVCEPLPERQYQCRCTPGYHGQHCEFMIDACYGNPCRNSGTCKLLEEGRFNCECAP 425
           C N G C    ER+  C C  G+HG HCE    A     C N G C  +  G   C C P
Sbjct: 155 CRNGGFCN---ERRI-CECPDGFHGPHCE---KALCTPRCMNGGLC--VTPGF--CICPP 203
Query: 426 GYTGDRCEINIDDCLSHKCENNATCVDLIQAYECRCAPGFQGEFCQ-TKTPFCAGEYNPC 484
           G+ G  C+    +C S  C N  TC       +C C PG +GE C+ +K P       PC
Sbjct: 204 GFYGVNCD--KANC-STTCFNGGTC---FYPGKCICPPGLEGEQCEISKCP------QPC 251
Query: 485 RNGARCLDHFSHYTCECTPGFSG 507
           RNG +C+       C+C+ G+ G
Sbjct: 252 RNGGKCI---GKSKCKCSKGYQG 271

>pdb|3REZ|A Chain A, Glycoprotein Gpib Variant Length = 129

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 26/55 (47%), Positives = 33/55 (60%), Gaps = 2/55 (3%)
Query: 88  CPSGCSCDGTRVDCSQRGLKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNL 142
           CP+ CSC GT VDC +RGL  +P  +P  TTEL+L  N +  +   G F  LP L
Sbjct: 4   CPAPCSCAGTLVDCGRRGLTALPA-LPARTTELVLTGNNLTSVPP-GAFDHLPQL 56

>pdb|3REZ|A Chain A, Glycoprotein Gpib Variant Length = 129

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 23/68 (33%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Query: 271 LHGNDISMIPEGAFADLHAITHLAIGGNPLYCDCGLAWLSEWV--KRDYVEPGIARCTEP 328
           L GN+++ +P GAF  L  +    +G NP  CDC L +L  W+  + +       RC  P
Sbjct: 37  LTGNNLTSVPPGAFDHLPQLRTAHLGANPWRCDCSLTYLRLWLEDRPERAPYRDLRCVAP 96
Query: 329 ASMRDKLL 336
            ++R +LL
Sbjct: 97  PALRGRLL 104

>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By Binding Of A Tri-Acylated Lipopeptide Length = 549

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 42/78 (53%)
Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPE 281
           DLSNN+I ++SN        L  L+L+ N +  I+ D+ + L SL  + L  N +S +  
Sbjct: 32  DLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSS 91
Query: 282 GAFADLHAITHLAIGGNP 299
             F  L ++T L + GNP
Sbjct: 92  SWFKPLSSLTFLNLLGNP 109

>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By Binding Of A Tri-Acylated Lipopeptide Length = 353

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 42/78 (53%)
Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPE 281
           DLSNN+I ++SN        L  L+L+ N +  I+ D+ + L SL  + L  N +S +  
Sbjct: 58  DLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSS 117
Query: 282 GAFADLHAITHLAIGGNP 299
             F  L ++T L + GNP
Sbjct: 118 SWFKPLSSLTFLNLLGNP 135

>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And Hagfish Vlrb.61 Length = 570

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 31/103 (30%), Positives = 53/103 (51%), Gaps = 5/103 (4%)
Query: 229 GFLSNF---TFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFA 285
            F  NF    F+ L  L+ L LS  +L+ +   A   L SL+++++  N +  +P+G F 
Sbjct: 456 SFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFD 515
Query: 286 DLHAITHLAIGGNPLYCDC-GLAWLSEWV-KRDYVEPGIARCT 326
            L ++  + +  NP  C C  + +LS W+ K    E G A+C+
Sbjct: 516 RLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQGSAKCS 558

>pdb|4ARN|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila Toll Receptor Length = 279

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 35/132 (26%), Positives = 65/132 (49%), Gaps = 9/132 (6%)
Query: 201 FSSRIRVSYYVGNYPVSTMYRDLSNNQ----IGFLSNFTFSPLSKLSQLILSYNKLQCID 256
           F++R R+++   N  + T  R+LS+ +    I  + +  F  L  L  +    NKL+ + 
Sbjct: 130 FTTR-RLTHIPAN--LLTDMRNLSHLELRANIEEMPSHLFDDLENLESIEFGSNKLRQMP 186
Query: 257 RDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIGGNPLYCDC-GLAWLSEWV-K 314
           R     +  L+ ++L  N +  +P+G F  L ++  + +  NP  C C  + +LS W+ K
Sbjct: 187 RGIFGKMPKLKQLNLASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNK 246
Query: 315 RDYVEPGIARCT 326
               E G A+C+
Sbjct: 247 NSQKEQGSAKCS 258

>pdb|3RFE|A Chain A, Crystal Structure Of Glycoprotein Gpib Ectodomain Length = 130

Iteration: 1
 Score = 45.8 bits (107), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 26/57 (45%), Positives = 33/57 (57%), Gaps = 3/57 (5%)
Query: 88  CPSGCSCDGTRVDCSQRGLK--EIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNL 142
           CP+ CSC GT VDC +RGL    +P   P+ TTEL+L  N +  +   GL   LP L
Sbjct: 2   CPAPCSCAGTLVDCGRRGLTWASLPTAFPVDTTELVLTGNNLTALPP-GLLDALPAL 57

>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain Length = 697

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 70/271 (25%), Positives = 112/271 (41%), Gaps = 64/271 (23%)
Query: 76  TRYAGDCLIDAACPSGCSCDGTR---------VDCSQRGLKEIPKDIPLY---TTELILN 123
           TRY+   ++DA   S    +            ++     L +I     ++    TEL L 
Sbjct: 46  TRYSQLAILDAGFNSISKLEPELCQILPLLKVLNLQHNELSQISDQTFVFCTNLTELDLM 105
Query: 124 DNEIGKIKSDGLFGRLPNLIKLDLRRNQV------TGI--------------------ED 157
            N I KIKS+  F    NLIKLDL  N +      TG+                    E+
Sbjct: 106 SNSIHKIKSNP-FKNQKNLIKLDLSHNGLSSTKLGTGVQLENLQELLLAKNKILALRSEE 164
Query: 158 NAFEGENDQGCLGDNYCP-----PKCTCTVRVLFYDGRAGECYIAVELFSSRI------R 206
             F G +    L  +  P     P C  T+  LF          A+ L ++++      +
Sbjct: 165 LEFLGNSSLRKLDLSSNPLKEFSPGCFQTIGKLF----------ALLLNNAQLNPHLTEK 214
Query: 207 VSYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPL--SKLSQLILSYNKLQCIDRDALAGLK 264
           + + + N  +  +   L+NNQ+   S  TFS L  + L+QL LSYN L  +   + + L 
Sbjct: 215 LCWELSNTSIQNL--SLANNQLLATSESTFSGLKWTNLTQLDLSYNNLHDVGNGSFSYLP 272
Query: 265 SLRIISLHGNDISMIPEGAFADLHAITHLAI 295
           SLR +SL  N+I  +   +F  L  + +L++
Sbjct: 273 SLRYLSLEYNNIQRLSPRSFYGLSNLRYLSL 303

>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex Length = 606

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 56/211 (26%), Positives = 89/211 (42%), Gaps = 30/211 (14%)
Query: 100 DCSQRGLKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNA 159
           +C   GL EIP  +P  T  L  + N +  I++   F RL NL  LDL R Q+  I ++ 
Sbjct: 18  NCENLGLNEIPGTLPNSTECLEFSFNVLPTIQNTT-FSRLINLTFLDLTRCQIYWIHEDT 76
Query: 160 FEGENDQGCLGDNYCP-----------PKCTCTVRVLFYDGRAGECYIAVELFSSRIRVS 208
           F+ ++    L     P           PK    ++ LF+          + L + +   S
Sbjct: 77  FQSQHRLDTLVLTANPLIFMAETALSGPKA---LKHLFFIQTGISSIDFIPLHNQKTLES 133
Query: 209 YYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRI 268
            Y+G+  +S++         GF       P  KL  L    N +  + ++ ++ L+    
Sbjct: 134 LYLGSNHISSIKLP-----KGF-------PTEKLKVLDFQNNAIHYLSKEDMSSLQQATN 181
Query: 269 IS--LHGNDISMIPEGAFADLHAITHLAIGG 297
           +S  L+GNDI+ I  GAF D      L  GG
Sbjct: 182 LSLNLNGNDIAGIEPGAF-DSAVFQSLNFGG 211

>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex Length = 580

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/107 (29%), Positives = 56/107 (52%), Gaps = 8/107 (7%)
Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPE 281
           D+SNN +   S F    L +L +L +S NKL+ +   +L  +  L ++ +  N +  +P+
Sbjct: 463 DVSNNNLDSFSLF----LPRLQELYISRNKLKTLPDASLFPV--LLVMKIASNQLKSVPD 516
Query: 282 GAFADLHAITHLAIGGNPLYCDC-GLAWLSEWV-KRDYVEPGIARCT 326
           G F  L ++  + +  NP  C C  + +LS W+ K    E G A+C+
Sbjct: 517 GIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQGSAKCS 563

>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By Binding Of A Tri-acylated Lipopeptide Length = 549

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/114 (28%), Positives = 58/114 (50%), Gaps = 8/114 (7%)
Query: 215 PVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGN 274
           P +    D+SNN +   S F    L +L +L +S NKL+ +   +L  +  L ++ +  N
Sbjct: 430 PQTLEVLDVSNNNLDSFSLF----LPRLQELYISRNKLKTLPDASLFPV--LLVMKISRN 483
Query: 275 DISMIPEGAFADLHAITHLAIGGNPLYCDC-GLAWLSEWV-KRDYVEPGIARCT 326
            +  +P+G F  L ++  + +  NP  C C  + +LS W+ K    E G A+C+
Sbjct: 484 QLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQGSAKCS 537

>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex Length = 562

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/85 (28%), Positives = 47/85 (55%), Gaps = 5/85 (5%)
Query: 241 KLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIGGNPL 300
           K+  L L  N++  I +D    L++L+ +++  N +  +P+G F  L ++ ++ +  NP 
Sbjct: 451 KVKVLDLHNNRIMSIPKDV-THLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPW 509
Query: 301 YCDC-GLAWLSEWVKRDYVEPGIAR 324
            C C G+ +LSEW+ +     G+ R
Sbjct: 510 DCTCPGIRYLSEWINK---HSGVVR 531

>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into An Electron Microscopy Single Particle Reconstruction Length = 844

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 51/197 (25%), Positives = 86/197 (43%), Gaps = 19/197 (9%)
Query: 122 LNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEG-ENDQGC-LGDN-YCPPKC 178
           L+ N +G++ S   +G LP +  +DL++N +  I+D  F+  E  Q   L DN       
Sbjct: 321 LSYNLLGELYSSNFYG-LPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHF 379
Query: 179 TCTVRVLFYDGRAGECYIAVELFSSRIRVSY-YVGNYPVSTMYRDLSNNQIGFLSNFTFS 237
             ++  +F  G        + L ++ I +S   + N  +      + + QI  L+   FS
Sbjct: 380 IPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFS 439
Query: 238 PLS---------KLSQLILSYNKLQCIDR-----DALAGLKSLRIISLHGNDISMIPEGA 283
             S          L QL L  N LQ         D   GL  L+++ L+ N ++ +P G 
Sbjct: 440 SCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGV 499
Query: 284 FADLHAITHLAIGGNPL 300
           F+ L A+  L++  N L
Sbjct: 500 FSHLTALRGLSLNSNRL 516

>pdb|2RQZ|A Chain A, Structure Of Sugar Modified Epidermal Growth Factor-Like Repeat 12 Of Mouse Notch-1 Receptor Length = 38

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 15/38 (39%), Positives = 30/38 (78%)
Query: 435 NIDDCLSHKCENNATCVDLIQAYECRCAPGFQGEFCQT 472
           ++++C+S+ C+N+ATC+D I  ++C C PG++G +C+ 
Sbjct: 1   DVNECISNPCQNDATCLDQIGEFQCICMPGYEGVYCEI 38

>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex Length = 612

Iteration: 1
 Score = 42.4 bits (98), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 53/211 (25%), Positives = 81/211 (38%), Gaps = 44/211 (20%)
Query: 95  DGTRV-DCSQRGLKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVT 153
           +G R  +C   GL+EIP  +P  T  L  + N +  I++   F RL NLI LDL R Q+ 
Sbjct: 11  EGNRTYNCENLGLREIPDTLPNTTEVLEFSFNFLPTIQNTT-FSRLINLIFLDLTRCQIN 69
Query: 154 GIEDNAFEGENDQGCLGDNYCP-----------PKC--------TCTVRVLFYDGRAGEC 194
            + ++ F+  +    +     P           PK         T    + F      E 
Sbjct: 70  WVHEDTFQSHHQLNTIVLTGNPLIFMAETSLTGPKFLKHLFLTQTGISNLEFIPVHNLEN 129
Query: 195 YIAVELFSSRIRVSYYVGNYPVSTM-YRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQ 253
             ++ L S+ I       N+P   +   D  NN I ++S    + L + + L L++N   
Sbjct: 130 LESLHLGSNHISSINLPENFPTQNLKVLDFQNNAIHYISRKDTNSLEQATNLSLNFN--- 186
Query: 254 CIDRDALAGLKSLRIISLHGNDISMIPEGAF 284
                              GNDI  I  GAF
Sbjct: 187 -------------------GNDIKGIEPGAF 198

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	604
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	1e-46
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	4e-18
2vj3_A	135	Neurogenic locus notch homolog protein 1; transcri	6e-42
2vj3_A	135	Neurogenic locus notch homolog protein 1; transcri	3e-38
2vj3_A	135	Neurogenic locus notch homolog protein 1; transcri	1e-37
2vj3_A	135	Neurogenic locus notch homolog protein 1; transcri	1e-28
2vj3_A	135	Neurogenic locus notch homolog protein 1; transcri	1e-21
2vj3_A	135	Neurogenic locus notch homolog protein 1; transcri	1e-08
2vj3_A	135	Neurogenic locus notch homolog protein 1; transcri	7e-08
2vj3_A	135	Neurogenic locus notch homolog protein 1; transcri	7e-07
2vj3_A	135	Neurogenic locus notch homolog protein 1; transcri	5e-04
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-41
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-38
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-18
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	5e-15
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-06
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-06
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	6e-05
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	3e-40
1nfu_B	195	Coagulation factor XA, light chain; hydrolase; HET	2e-39
1nfu_B	195	Coagulation factor XA, light chain; hydrolase; HET	6e-35
1nfu_B	195	Coagulation factor XA, light chain; hydrolase; HET	9e-29
1nfu_B	195	Coagulation factor XA, light chain; hydrolase; HET	5e-25
1nfu_B	195	Coagulation factor XA, light chain; hydrolase; HET	3e-16
1nfu_B	195	Coagulation factor XA, light chain; hydrolase; HET	3e-06
1nfu_B	195	Coagulation factor XA, light chain; hydrolase; HET	2e-04
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	5e-37
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-19
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-11
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	7e-06
4d90_A	143	EGF-like repeat and discoidin I-like domain-conta	4e-36
4d90_A	143	EGF-like repeat and discoidin I-like domain-conta	6e-35
4d90_A	143	EGF-like repeat and discoidin I-like domain-conta	2e-20
4d90_A	143	EGF-like repeat and discoidin I-like domain-conta	4e-11
4d90_A	143	EGF-like repeat and discoidin I-like domain-conta	2e-07
4d90_A	143	EGF-like repeat and discoidin I-like domain-conta	7e-06
4d90_A	143	EGF-like repeat and discoidin I-like domain-conta	2e-05
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	6e-36
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-19
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-18
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	4e-18
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-06
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-06
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-05
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-04
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	8e-36
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-35
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-19
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-19
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-18
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-18
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-15
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	7e-15
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-14
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	8e-13
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-12
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-06
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-04
2vj2_A	169	Jagged-1; signalling, polymorphism, glycoprotein,	2e-35
2vj2_A	169	Jagged-1; signalling, polymorphism, glycoprotein,	5e-20
2vj2_A	169	Jagged-1; signalling, polymorphism, glycoprotein,	2e-14
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-35
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-28
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-19
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-19
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-18
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-17
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-34
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	7e-20
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	4e-19
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	8e-18
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-06
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	8e-06
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-04
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-04
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	5e-34
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-18
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	9e-17
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	5e-12
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	5e-06
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	4e-04
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	7e-34
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-21
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	7e-34
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-26
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	8e-34
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	4e-25
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	5e-06
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	5e-05
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	9e-05
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	8e-34
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-19
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	5e-19
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-17
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	4e-17
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	6e-06
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-05
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-04
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-04
2ygq_A	324	WIF-1, WNT inhibitory factor 1; signaling protein,	2e-33
2ygq_A	324	WIF-1, WNT inhibitory factor 1; signaling protein,	6e-32
2ygq_A	324	WIF-1, WNT inhibitory factor 1; signaling protein,	2e-19
2ygq_A	324	WIF-1, WNT inhibitory factor 1; signaling protein,	3e-04
2vh0_B	134	Activated factor XA light chain; serine protease,	3e-33
2vh0_B	134	Activated factor XA light chain; serine protease,	8e-28
2vh0_B	134	Activated factor XA light chain; serine protease,	9e-27
2vh0_B	134	Activated factor XA light chain; serine protease,	7e-21
2vh0_B	134	Activated factor XA light chain; serine protease,	2e-20
2vh0_B	134	Activated factor XA light chain; serine protease,	1e-08
2vh0_B	134	Activated factor XA light chain; serine protease,	6e-08
2vh0_B	134	Activated factor XA light chain; serine protease,	3e-04
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-32
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-21
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-19
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-18
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-18
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-18
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-18
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	8e-18
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-17
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-16
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-16
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-14
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-14
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-14
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	8e-10
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	9e-06
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-05
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-05
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	4e-32
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	4e-31
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	3e-25
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	8e-31
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-24
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-19
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-18
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	6e-16
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-15
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	6e-15
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-14
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-10
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-08
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-06
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	7e-06
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-30
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-26
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-20
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-11
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	6e-11
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-10
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-09
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-05
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	9e-30
1x7a_L	146	Coagulation factor IX, light chain; inhibition, bl	1e-29
1x7a_L	146	Coagulation factor IX, light chain; inhibition, bl	6e-26
1x7a_L	146	Coagulation factor IX, light chain; inhibition, bl	2e-21
1x7a_L	146	Coagulation factor IX, light chain; inhibition, bl	5e-21
1x7a_L	146	Coagulation factor IX, light chain; inhibition, bl	3e-15
1x7a_L	146	Coagulation factor IX, light chain; inhibition, bl	3e-08
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	7e-29
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-23
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-22
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-21
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	7e-20
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-15
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	9e-15
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-13
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-13
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-06
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	8e-29
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	6e-19
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-17
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-17
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-16
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-15
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	8e-13
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-12
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-12
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	6e-12
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-07
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-05
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-05
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-28
2c4f_L	142	Coagulation factor VII precursor; blood coagulatio	2e-28
2c4f_L	142	Coagulation factor VII precursor; blood coagulatio	6e-21
2c4f_L	142	Coagulation factor VII precursor; blood coagulatio	5e-19
2c4f_L	142	Coagulation factor VII precursor; blood coagulatio	4e-17
2c4f_L	142	Coagulation factor VII precursor; blood coagulatio	4e-09
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-26
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-17
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-17
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-16
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-15
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-15
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-14
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-13
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-11
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-10
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-10
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	8e-09
3m19_A	251	Variable lymphocyte receptor A diversity region; a	3e-26
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	4e-26
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	4e-11
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	1e-25
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	2e-25
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	7e-25
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	6e-23
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	4e-17
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	5e-17
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-05
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-24
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-14
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-13
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	4e-11
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	4e-10
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	4e-07
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-04
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-23
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-20
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-19
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-19
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	5e-17
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-16
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-11
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	6e-11
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-10
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	5e-08
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-07
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-05
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	5e-04
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	9e-04
1aut_L	114	Activated protein C; serine proteinase, plasma cal	1e-22
1aut_L	114	Activated protein C; serine proteinase, plasma cal	6e-16
1aut_L	114	Activated protein C; serine proteinase, plasma cal	6e-13
1aut_L	114	Activated protein C; serine proteinase, plasma cal	8e-10
1aut_L	114	Activated protein C; serine proteinase, plasma cal	2e-06
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-22
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-16
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-15
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	5e-15
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	8e-14
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-13
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-13
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	6e-13
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-08
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	9e-08
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-07
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-05
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-04
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	5e-04
2gy5_A	423	Angiopoietin-1 receptor; ligand-binding domain, tr	1e-21
2gy5_A	423	Angiopoietin-1 receptor; ligand-binding domain, tr	2e-18
2gy5_A	423	Angiopoietin-1 receptor; ligand-binding domain, tr	7e-16
2gy5_A	423	Angiopoietin-1 receptor; ligand-binding domain, tr	3e-08
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-21
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	5e-16
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-14
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-13
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	5e-13
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	8e-13
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	9e-08
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-07
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-07
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	6e-06
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	5e-05
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-04
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	8e-04
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-21
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-20
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	8e-20
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-19
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-19
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-17
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	7e-16
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	8e-10
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	7e-07
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	5e-21
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	8e-13
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-20
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-14
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-13
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-11
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	3e-10
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	5e-09
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	4e-06
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-18
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-18
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	8e-16
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-14
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-13
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-10
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-05
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	9e-05
3k6s_B	687	Integrin beta-2; cell receptor, adhesion molecule,	5e-18
3k6s_B	687	Integrin beta-2; cell receptor, adhesion molecule,	3e-17
3k6s_B	687	Integrin beta-2; cell receptor, adhesion molecule,	5e-13
3zyj_B	426	Netrin-G1; cell adhesion, synapse; HET: NAG BMA MA	3e-17
3zyj_B	426	Netrin-G1; cell adhesion, synapse; HET: NAG BMA MA	1e-14
3zyj_B	426	Netrin-G1; cell adhesion, synapse; HET: NAG BMA MA	1e-12
3zyj_B	426	Netrin-G1; cell adhesion, synapse; HET: NAG BMA MA	2e-08
3zyj_B	426	Netrin-G1; cell adhesion, synapse; HET: NAG BMA MA	3e-08
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	7e-17
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	5e-12
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	9e-17
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	4e-12
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-16
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-15
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	8e-12
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	6e-09
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-08
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-08
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	9e-08
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-07
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	8e-04
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-16
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-09
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	4e-04
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	3e-16
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	4e-13
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	1e-15
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	1e-13
3e6j_A	229	Variable lymphocyte receptor diversity region; var	2e-15
3e6j_A	229	Variable lymphocyte receptor diversity region; var	1e-10
3e6j_A	229	Variable lymphocyte receptor diversity region; var	6e-09
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-14
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-13
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-13
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-12
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	9e-12
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-11
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-11
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-11
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	6e-09
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	9e-09
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-08
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	9e-06
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-05
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	9e-05
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-04
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-04
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-04
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-04
3h5c_B	317	Vitamin K-dependent protein Z; protein Z-protein Z	3e-14
3h5c_B	317	Vitamin K-dependent protein Z; protein Z-protein Z	2e-12
3h5c_B	317	Vitamin K-dependent protein Z; protein Z-protein Z	4e-11
3h5c_B	317	Vitamin K-dependent protein Z; protein Z-protein Z	2e-09
3h5c_B	317	Vitamin K-dependent protein Z; protein Z-protein Z	1e-08
1uzk_A	162	Fibrillin-1; glycoprotein, extra-cellular matrix,	4e-14
1uzk_A	162	Fibrillin-1; glycoprotein, extra-cellular matrix,	1e-12
1uzk_A	162	Fibrillin-1; glycoprotein, extra-cellular matrix,	2e-04
1tpg_A	91	T-plasminogen activator F1-G; plasminogen activati	1e-13
1tpg_A	91	T-plasminogen activator F1-G; plasminogen activati	1e-13
1tpg_A	91	T-plasminogen activator F1-G; plasminogen activati	2e-12
2w86_A	147	Fibrillin-1, fibrillin1; phosphoprotein, EGF-like	1e-13
2w86_A	147	Fibrillin-1, fibrillin1; phosphoprotein, EGF-like	6e-08
2w86_A	147	Fibrillin-1, fibrillin1; phosphoprotein, EGF-like	2e-04
1yo8_A	634	Thrombospondin-2; EGF, Ca(2+)-binding domains, lec	2e-13
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-12
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-11
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-10
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-09
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-08
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	9e-05
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	5e-04
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	8e-04
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-12
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	4e-12
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	5e-12
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-08
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-12
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-11
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-10
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-04
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	7e-04
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-12
1o6v_A	466	Internalin A; bacterial infection, extracellular r	6e-12
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-11
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-11
1o6v_A	466	Internalin A; bacterial infection, extracellular r	6e-11
1o6v_A	466	Internalin A; bacterial infection, extracellular r	9e-11
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-10
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-10
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-09
1o6v_A	466	Internalin A; bacterial infection, extracellular r	6e-09
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-06
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-06
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-05
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-04
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-04
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-04
1o6v_A	466	Internalin A; bacterial infection, extracellular r	7e-04
1o6v_A	466	Internalin A; bacterial infection, extracellular r	8e-04
1o6v_A	466	Internalin A; bacterial infection, extracellular r	9e-04
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-12
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-07
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-07
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	9e-06
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	5e-12
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	4e-09
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	1e-08
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	6e-04
3fcs_B	690	Integrin beta-3; beta propeller, rossmann fold, EG	5e-12
3fcs_B	690	Integrin beta-3; beta propeller, rossmann fold, EG	1e-11
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-11
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	5e-10
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-09
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	5e-09
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	6e-09
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-04
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	7e-11
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-07
3qcw_A	1245	Neurexin-1-alpha; synaptic adhesion molecule, cell	7e-11
3qcw_A	1245	Neurexin-1-alpha; synaptic adhesion molecule, cell	2e-10
3qcw_A	1245	Neurexin-1-alpha; synaptic adhesion molecule, cell	5e-09
3qcw_A	1245	Neurexin-1-alpha; synaptic adhesion molecule, cell	1e-05
3qcw_A	1245	Neurexin-1-alpha; synaptic adhesion molecule, cell	1e-04
3qcw_A	1245	Neurexin-1-alpha; synaptic adhesion molecule, cell	1e-04
3qcw_A	1245	Neurexin-1-alpha; synaptic adhesion molecule, cell	4e-04
3qcw_A	1245	Neurexin-1-alpha; synaptic adhesion molecule, cell	5e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	8e-11
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-08
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-10
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-10
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-09
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-08
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-10
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	5e-10
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	8e-10
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-09
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	4e-09
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	4e-09
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	5e-08
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	7e-08
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-07
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	4e-04
1edm_B	39	Factor IX; epidermal growth factor, EGF, calcium-	2e-10
1edm_B	39	Factor IX; epidermal growth factor, EGF, calcium-	5e-10
1edm_B	39	Factor IX; epidermal growth factor, EGF, calcium-	2e-07
1edm_B	39	Factor IX; epidermal growth factor, EGF, calcium-	2e-07
1edm_B	39	Factor IX; epidermal growth factor, EGF, calcium-	4e-06
1edm_B	39	Factor IX; epidermal growth factor, EGF, calcium-	6e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	6e-10
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-08
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-09
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	7e-09
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-06
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-06
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	3e-09
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	5e-06
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	1e-04
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-04
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	4e-09
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	4e-07
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	4e-06
1z1y_A	186	Ookinete surface protein PVS25; four EGF-like doma	9e-09
1z1y_A	186	Ookinete surface protein PVS25; four EGF-like doma	6e-07
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-08
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-08
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-04
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	6e-04
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	6e-04
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-08
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-07
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-07
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-06
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-06
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-05
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-05
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-05
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	9e-04
2bou_A	143	EGF-like module containing mucin-like hormone rece	2e-08
2bou_A	143	EGF-like module containing mucin-like hormone rece	1e-07
2bou_A	143	EGF-like module containing mucin-like hormone rece	2e-06
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-07
3asi_A	410	Neurexin-1-alpha; beta-sandwich, cell adhesion, sy	3e-07
3asi_A	410	Neurexin-1-alpha; beta-sandwich, cell adhesion, sy	6e-06
3asi_A	410	Neurexin-1-alpha; beta-sandwich, cell adhesion, sy	4e-05
3asi_A	410	Neurexin-1-alpha; beta-sandwich, cell adhesion, sy	5e-05
3asi_A	410	Neurexin-1-alpha; beta-sandwich, cell adhesion, sy	1e-04
4fbr_A	267	Lectin, myxobacterial hemagglutinin; beta-barrel,	3e-07
4fbr_A	267	Lectin, myxobacterial hemagglutinin; beta-barrel,	4e-07
4fbr_A	267	Lectin, myxobacterial hemagglutinin; beta-barrel,	8e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-07
1dx5_I	118	Thrombomodulin; serine proteinase, EGF-like domain	6e-07
1dx5_I	118	Thrombomodulin; serine proteinase, EGF-like domain	2e-05
1q4g_A	553	Prostaglandin G/H synthase 1; cyclooxygenase, non-	1e-06
3nt1_A	587	Prostaglandin-endoperoxide synthase 2; prostagland	2e-06
1egf_A	53	Epidermal growth factor; NMR {Mus musculus} SCOP:	2e-06
1egf_A	53	Epidermal growth factor; NMR {Mus musculus} SCOP:	2e-05
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	9e-06
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-05
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-04
1nql_B	53	Epidermal growth factor; cell surface receptor, ty	1e-05
1nql_B	53	Epidermal growth factor; cell surface receptor, ty	9e-05
2w2n_E	107	LDL receptor, low-density lipoprotein receptor; hy	3e-05
4aqs_A	525	Laminin subunit beta-1; cell adhesion; HET: NAG BM	2e-04
4aqs_A	525	Laminin subunit beta-1; cell adhesion; HET: NAG BM	6e-04
3ltf_D	58	Protein spitz; receptor-ligand complex ectodomain	3e-04
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	4e-04
1lmj_A	86	Fibrillin 1; EGF, calcium, microfibril, neonatal,	5e-04
4dur_A	791	Plasminogen, serine protease; fibrinolysis, hydrol	7e-04
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	7e-04

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score =  161 bits (409), Expect = 1e-46
 Identities = 80/130 (61%), Positives = 97/130 (74%)

Query: 220 YRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMI 279
             DLSNN+I  LSN +FS +++L  LILSYN+L+CI      GLKSLR++SLHGNDIS++
Sbjct: 58  LIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVV 117

Query: 280 PEGAFADLHAITHLAIGGNPLYCDCGLAWLSEWVKRDYVEPGIARCTEPASMRDKLLLTA 339
           PEGAF DL A++HLAIG NPLYCDC + WLS+WVK +Y EPGIARC  P  M DKLLLT 
Sbjct: 118 PEGAFNDLSALSHLAIGANPLYCDCNMQWLSDWVKSEYKEPGIARCAGPGEMADKLLLTT 177

Query: 340 PASSFQCKEK 349
           P+  F C   
Sbjct: 178 PSKKFTCAAA 187

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 82.0 bits (203), Expect = 4e-18
 Identities = 25/75 (33%), Positives = 41/75 (54%), Gaps = 2/75 (2%)

Query: 86  AACPSGCSCDGTRVDCSQRGLKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKL 145
           + CP+ C+C  T V CS +GLK +PK IP   TEL L+ N+   +          +L  +
Sbjct: 2   SRCPTECTCLDTVVRCSNKGLKVLPKGIPRDVTELYLDGNQFTLV--PKELSNYKHLTLI 59

Query: 146 DLRRNQVTGIEDNAF 160
           DL  N+++ + + +F
Sbjct: 60  DLSNNRISTLSNQSF 74

>2vj3_A Neurogenic locus notch homolog protein 1; transcription, metal-binding, transmembrane, developmental protein, notch signaling pathway; 2.60A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 1toz_A 2rqz_A* 2rr0_A 2rr2_A* Length = 135

 Score =  146 bits (372), Expect = 6e-42
 Identities = 49/128 (38%), Positives = 77/128 (60%), Gaps = 3/128 (2%)

Query: 399 ACYGNPCRNSGTCKLLEEGRFNCECAPGYTGDRCEINIDDCLSHKCENNATCVDLIQAYE 458
           +   NPC ++G C +   G F C+C  GYTG RCEI++++C+S+ C+N+ATC+D I  ++
Sbjct: 9   SLGANPCEHAGKC-INTLGSFECQCLQGYTGPRCEIDVNECVSNPCQNDATCLDQIGEFQ 67

Query: 459 CRCAPGFQGEFCQTKTPFCAGEYNPCRNGARCLDHFSHYTCECTPGFSGVNCTVNVDDCV 518
           C C PG++G  C+  T  CA   +PC +  RCLD  + + CEC  GF+G  C V++   +
Sbjct: 68  CICMPGYEGVHCEVNTDECAS--SPCLHNGRCLDKINEFQCECPTGFTGHLCQVDLHHIL 125

Query: 519 NHMCQNGG 526
           +       
Sbjct: 126 DAQKMVWN 133

>2vj3_A Neurogenic locus notch homolog protein 1; transcription, metal-binding, transmembrane, developmental protein, notch signaling pathway; 2.60A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 1toz_A 2rqz_A* 2rr0_A 2rr2_A* Length = 135

 Score =  136 bits (345), Expect = 3e-38
 Identities = 45/128 (35%), Positives = 60/128 (46%), Gaps = 2/128 (1%)

Query: 360 ACYKSPCTNQGVCEPLPERQYQCRCTPGYHGQHCEFMIDACYGNPCRNSGTCKLLEEGRF 419
           +   +PC + G C       ++C+C  GY G  CE  ++ C  NPC+N  TC     G F
Sbjct: 9   SLGANPCEHAGKCINTLGS-FECQCLQGYTGPRCEIDVNECVSNPCQNDATCLDQI-GEF 66

Query: 420 NCECAPGYTGDRCEINIDDCLSHKCENNATCVDLIQAYECRCAPGFQGEFCQTKTPFCAG 479
            C C PGY G  CE+N D+C S  C +N  C+D I  ++C C  GF G  CQ        
Sbjct: 67  QCICMPGYEGVHCEVNTDECASSPCLHNGRCLDKINEFQCECPTGFTGHLCQVDLHHILD 126

Query: 480 EYNPCRNG 487
                 N 
Sbjct: 127 AQKMVWNH 134

>2vj3_A Neurogenic locus notch homolog protein 1; transcription, metal-binding, transmembrane, developmental protein, notch signaling pathway; 2.60A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 1toz_A 2rqz_A* 2rr0_A 2rr2_A* Length = 135

 Score =  135 bits (341), Expect = 1e-37
 Identities = 42/118 (35%), Positives = 69/118 (58%), Gaps = 4/118 (3%)

Query: 435 NIDDC--LSHKCENNATCVDLIQAYECRCAPGFQGEFCQTKTPFCAGEYNPCRNGARCLD 492
           ++D+C   ++ CE+   C++ + ++EC+C  G+ G  C+     C    NPC+N A CLD
Sbjct: 4   DVDECSLGANPCEHAGKCINTLGSFECQCLQGYTGPRCEIDVNECVS--NPCQNDATCLD 61

Query: 493 HFSHYTCECTPGFSGVNCTVNVDDCVNHMCQNGGTCVDGINDYTCKCEGDFVGKFCEI 550
               + C C PG+ GV+C VN D+C +  C + G C+D IN++ C+C   F G  C++
Sbjct: 62  QIGEFQCICMPGYEGVHCEVNTDECASSPCLHNGRCLDKINEFQCECPTGFTGHLCQV 119

>2vj3_A Neurogenic locus notch homolog protein 1; transcription, metal-binding, transmembrane, developmental protein, notch signaling pathway; 2.60A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 1toz_A 2rqz_A* 2rr0_A 2rr2_A* Length = 135

 Score =  109 bits (276), Expect = 1e-28
 Identities = 35/119 (29%), Positives = 61/119 (51%), Gaps = 12/119 (10%)

Query: 477 CAGEYNPCRNGARCLDHFSHYTCECTPGFSGVNCTVNVDDCVNHMCQNGGTCVDGINDYT 536
           C+   NPC +  +C++    + C+C  G++G  C ++V++CV++ CQN  TC+D I ++ 
Sbjct: 8   CSLGANPCEHAGKCINTLGSFECQCLQGYTGPRCEIDVNECVSNPCQNDATCLDQIGEFQ 67

Query: 537 CKCEGDFVGKFCEIAPFVAMMYPQTSPCQHHDCKN-GICFQPQGSNDYLCKCAPGYSGK 594
           C C   + G  CE+          T  C    C + G C      N++ C+C  G++G 
Sbjct: 68  CICMPGYEGVHCEV---------NTDECASSPCLHNGRCL--DKINEFQCECPTGFTGH 115

>2vj3_A Neurogenic locus notch homolog protein 1; transcription, metal-binding, transmembrane, developmental protein, notch signaling pathway; 2.60A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 1toz_A 2rqz_A* 2rr0_A 2rr2_A* Length = 135

 Score = 90.0 bits (224), Expect = 1e-21
 Identities = 31/89 (34%), Positives = 42/89 (47%), Gaps = 2/89 (2%)

Query: 359 NACYKSPCTNQGVCEPLPERQYQCRCTPGYHGQHCEFMIDACYGNPCRNSGTCKLLEEGR 418
           N C  +PC N   C       +QC C PGY G HCE   D C  +PC ++G C       
Sbjct: 46  NECVSNPCQNDATCLDQIGE-FQCICMPGYEGVHCEVNTDECASSPCLHNGRCLDK-INE 103

Query: 419 FNCECAPGYTGDRCEINIDDCLSHKCENN 447
           F CEC  G+TG  C++++   L  +    
Sbjct: 104 FQCECPTGFTGHLCQVDLHHILDAQKMVW 132

>2vj3_A Neurogenic locus notch homolog protein 1; transcription, metal-binding, transmembrane, developmental protein, notch signaling pathway; 2.60A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 1toz_A 2rqz_A* 2rr0_A 2rr2_A* Length = 135

 Score = 52.6 bits (127), Expect = 1e-08
 Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 12/71 (16%)

Query: 1   NGGTCVDGINDYTCKCEGDFVGKFCEIAPFVAMMYPQTSPCQHHDCKN-GICFQPQGSND 59
           N  TC+D I ++ C C   + G  CE+          T  C    C + G C      N+
Sbjct: 55  NDATCLDQIGEFQCICMPGYEGVHCEV---------NTDECASSPCLHNGRCL--DKINE 103

Query: 60  YLCKCAPGYSG 70
           + C+C  G++G
Sbjct: 104 FQCECPTGFTG 114

>2vj3_A Neurogenic locus notch homolog protein 1; transcription, metal-binding, transmembrane, developmental protein, notch signaling pathway; 2.60A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 1toz_A 2rqz_A* 2rr0_A 2rr2_A* Length = 135

 Score = 50.7 bits (122), Expect = 7e-08
 Identities = 19/72 (26%), Positives = 31/72 (43%), Gaps = 12/72 (16%)

Query: 1  NGGTCVDGINDYTCKCEGDFVGKFCEIAPFVAMMYPQTSPCQHHDCKNG-ICFQPQGSND 59
          + G C++ +  + C+C   + G  CEI           + C  + C+N   C       +
Sbjct: 17 HAGKCINTLGSFECQCLQGYTGPRCEI---------DVNECVSNPCQNDATCL--DQIGE 65

Query: 60 YLCKCAPGYSGV 71
          + C C PGY GV
Sbjct: 66 FQCICMPGYEGV 77

>2vj3_A Neurogenic locus notch homolog protein 1; transcription, metal-binding, transmembrane, developmental protein, notch signaling pathway; 2.60A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 1toz_A 2rqz_A* 2rr0_A 2rr2_A* Length = 135

 Score = 48.0 bits (115), Expect = 7e-07
 Identities = 12/51 (23%), Positives = 18/51 (35%), Gaps = 1/51 (1%)

Query: 359 NACYKSPCTNQGVCEPLPERQYQCRCTPGYHGQHCEFMIDACYGNPCRNSG 409
           + C  SPC + G C       +QC C  G+ G  C+  +            
Sbjct: 84  DECASSPCLHNGRCLDKINE-FQCECPTGFTGHLCQVDLHHILDAQKMVWN 133

>2vj3_A Neurogenic locus notch homolog protein 1; transcription, metal-binding, transmembrane, developmental protein, notch signaling pathway; 2.60A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 1toz_A 2rqz_A* 2rr0_A 2rr2_A* Length = 135

 Score = 39.5 bits (93), Expect = 5e-04
 Identities = 10/27 (37%), Positives = 17/27 (62%)

Query: 1   NGGTCVDGINDYTCKCEGDFVGKFCEI 27
           + G C+D IN++ C+C   F G  C++
Sbjct: 93  HNGRCLDKINEFQCECPTGFTGHLCQV 119

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  156 bits (395), Expect = 1e-41
 Identities = 57/231 (24%), Positives = 88/231 (38%), Gaps = 35/231 (15%)

Query: 87  ACPSGCSCDG--TRVDCSQRGLKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIK 144
            CP  C C      V C ++    +P+ IP  T  L L  N I  +  D  F   P+L +
Sbjct: 2   GCPPRCECSAQDRAVLCHRKRFVAVPEGIPTETRLLDLGKNRIKTLNQDE-FASFPHLEE 60

Query: 145 LDLRRNQVTGIEDNAFEGENDQGCLGDNYCPPKCTCTVRVLFYDGRAGECYIAVELFSSR 204
           L+L  N V+ +E  AF                     +R L              L S+R
Sbjct: 61  LELNENIVSAVEPGAFNN----------------LFNLRTL-------------GLRSNR 91

Query: 205 IR-VSYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGL 263
           ++ +   V     +    D+S N+I  L ++ F  L  L  L +  N L  I   A +GL
Sbjct: 92  LKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGL 151

Query: 264 KSLRIISLHGNDISMIPEGAFADLHAITHLAIGGNPLYC--DCGLAWLSEW 312
            SL  ++L   +++ IP  A + LH +  L +    +    D     L   
Sbjct: 152 NSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRL 202

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  147 bits (372), Expect = 2e-38
 Identities = 37/162 (22%), Positives = 64/162 (39%), Gaps = 9/162 (5%)

Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPE 281
           +LS N I  +       L +L ++ L   +L  ++  A  GL  LR++++ GN ++ + E
Sbjct: 254 NLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEE 313

Query: 282 GAFADLHAITHLAIGGNPLYCDCGLAWLSEWVKRDYVEPGIARCTEPASMRDKLLLTAP- 340
             F  +  +  L +  NPL CDC L W+     R         C  P  ++ K     P 
Sbjct: 314 SVFHSVGNLETLILDSNPLACDCRLLWVFRRRWRLNFNRQQPTCATPEFVQGKEFKDFPD 373

Query: 341 ---ASSFQCKE-KVSDEILSKCNA----CYKSPCTNQGVCEP 374
               + F C+  ++ D    +         +  C   G   P
Sbjct: 374 VLLPNYFTCRRARIRDRKAQQVFVDEGHTVQFVCRADGDPPP 415

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 87.5 bits (217), Expect = 2e-18
 Identities = 23/79 (29%), Positives = 41/79 (51%)

Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPE 281
           ++ +N + ++S+  FS L+ L QL L    L  I  +AL+ L  L ++ L   +I+ I +
Sbjct: 134 EVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRD 193

Query: 282 GAFADLHAITHLAIGGNPL 300
            +F  L+ +  L I   P 
Sbjct: 194 YSFKRLYRLKVLEISHWPY 212

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 76.7 bits (189), Expect = 5e-15
 Identities = 19/80 (23%), Positives = 39/80 (48%), Gaps = 2/80 (2%)

Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNK-LQCIDRDALAGLKSLRIISLHGNDISMIP 280
            L +  I  + +++F  L +L  L +S+   L  +  + L GL +L  +S+   +++ +P
Sbjct: 182 RLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGL-NLTSLSITHCNLTAVP 240

Query: 281 EGAFADLHAITHLAIGGNPL 300
             A   L  +  L +  NP+
Sbjct: 241 YLAVRHLVYLRFLNLSYNPI 260

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 50.5 bits (121), Expect = 1e-06
 Identities = 10/48 (20%), Positives = 17/48 (35%), Gaps = 1/48 (2%)

Query: 115 LYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEG 162
           L  T L +    +  +        L  L  L+L  N ++ IE +    
Sbjct: 224 LNLTSLSITHCNLTAV-PYLAVRHLVYLRFLNLSYNPISTIEGSMLHE 270

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 48.9 bits (117), Expect = 3e-06
 Identities = 16/69 (23%), Positives = 26/69 (37%), Gaps = 4/69 (5%)

Query: 97  TRVDCSQRGLKEIPKDIPLYT---TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVT 153
           T +  +   L  +P     +      L L+ N I  I    +   L  L ++ L   Q+ 
Sbjct: 227 TSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTI-EGSMLHELLRLQEIQLVGGQLA 285

Query: 154 GIEDNAFEG 162
            +E  AF G
Sbjct: 286 VVEPYAFRG 294

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 44.7 bits (106), Expect = 6e-05
 Identities = 11/45 (24%), Positives = 21/45 (46%), Gaps = 1/45 (2%)

Query: 118 TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEG 162
            E+ L   ++  +     F  L  L  L++  NQ+T +E++ F  
Sbjct: 275 QEIQLVGGQLAVV-EPYAFRGLNYLRVLNVSGNQLTTLEESVFHS 318

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score =  147 bits (372), Expect = 3e-40
 Identities = 56/279 (20%), Positives = 101/279 (36%), Gaps = 53/279 (18%)

Query: 89  PSGCSCDGTRVDCSQRGLKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLR 148
           P           C +    +IP ++P  T  L L+ N +  + S   F   P L  LDL 
Sbjct: 2   PCVEVVPNITYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGS-YSFFSFPELQVLDLS 60

Query: 149 RNQVTGIEDNAFEG--ENDQGCLGDNY-------CPPKCTCTVRVLFYDGRAGECYIAVE 199
           R ++  IED A++         L  N             +   +++  +       +A  
Sbjct: 61  RCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVE-----TNLA-- 113

Query: 200 LFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFL-SNFTFSPLSKLSQLILSYNKLQCIDRD 258
                  +  +   +  +    ++++N I        FS L+ L  L LS NK+Q I   
Sbjct: 114 ------SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT 167

Query: 259 ALAGLKSLRIISL----HGNDISMIPEGAFADLH-----------------------AIT 291
            L  L  + +++L      N ++ I  GAF ++                        ++ 
Sbjct: 168 DLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQ 227

Query: 292 HLAIGGNPLYCDC-GLAWLSEWVKR-DYVEPGIARCTEP 328
            + +  NP  C C  + +LS W+ +    E G A+C+  
Sbjct: 228 KIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQGSAKCSGS 266

>1nfu_B Coagulation factor XA, light chain; hydrolase; HET: RRP; 2.05A {Homo sapiens} SCOP: g.3.11.1 PDB: 2h9e_L* Length = 195

 Score =  142 bits (360), Expect = 2e-39
 Identities = 31/186 (16%), Positives = 52/186 (27%), Gaps = 11/186 (5%)

Query: 361 CYKSPCTNQGVCEPLPERQYQCRCTPGYHGQHCEFMIDACYGNPCRNSGTCKLLEEGRFN 420
           C +  C+ +   E                  +     D C  +PC+N G CK    G + 
Sbjct: 12  CMEETCSYEEARE------VFEDSDKTNEFWNKYKDGDQCETSPCQNQGKCKDG-LGEYT 64

Query: 421 CECAPGYTGDRCEINIDD-CLSHKCENNATCVDLIQAYECRCAPGFQGEFCQTKTPFCAG 479
           C C  G+ G  CE+     C     + +  C +   +  C CA G+              
Sbjct: 65  CTCLEGFEGKNCELFTRKLCSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKACIPTGP 124

Query: 480 EYNPCRNGARCLDHFSHYTCECTPGFS-GVNCTVNVDDCVNHMCQNGGTCVDGINDYTCK 538
              PC          S      + G +         D       +N    +D       +
Sbjct: 125 --YPCGKQTLERRKRSVAQATSSSGEAPDSITWKPYDAADLDPTENPFDLLDFNQTQPER 182

Query: 539 CEGDFV 544
            + +  
Sbjct: 183 GDNNLT 188

>1nfu_B Coagulation factor XA, light chain; hydrolase; HET: RRP; 2.05A {Homo sapiens} SCOP: g.3.11.1 PDB: 2h9e_L* Length = 195

 Score =  129 bits (327), Expect = 6e-35
 Identities = 23/174 (13%), Positives = 41/174 (23%), Gaps = 17/174 (9%)

Query: 400 CYGNPCRNSGTCKLLEEGRFNCECAPGYTGDRCEINIDDCLSHKCENNATCVDLIQAYEC 459
           C    C                +            + D C +  C+N   C D +  Y C
Sbjct: 12  CMEETCSYEEAR------EVFEDSDKTNEFWNKYKDGDQCETSPCQNQGKCKDGLGEYTC 65

Query: 460 RCAPGFQGEFCQTKTPFCAGEYNPCRNGARCLDHFSHYTCECTPGFSGVNCTVNVDDCVN 519
            C  GF+G+ C+  T       +       C +  +   C C  G++  +          
Sbjct: 66  TCLEGFEGKNCELFTRKLC-SLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKACIPTGP 124

Query: 520 HMCQNGGTCVDGINDYTCKC-EGDFVGKFCEIAPFVAMMYPQTSPCQHHDCKNG 572
           + C          +        G+                           +N 
Sbjct: 125 YPCGKQTLERRKRSVAQATSSSGEAPDSITWK---------PYDAADLDPTENP 169

>1nfu_B Coagulation factor XA, light chain; hydrolase; HET: RRP; 2.05A {Homo sapiens} SCOP: g.3.11.1 PDB: 2h9e_L* Length = 195

 Score =  112 bits (282), Expect = 9e-29
 Identities = 30/155 (19%), Positives = 43/155 (27%), Gaps = 6/155 (3%)

Query: 358 CNACYKSPCTNQGVCEPLPERQYQCRCTPGYHGQHCEF-MIDACYGNPCRNSGTCKLLEE 416
            + C  SPC NQG C+      Y C C  G+ G++CE      C  +       C   E+
Sbjct: 42  GDQCETSPCQNQGKCKDGLGE-YTCTCLEGFEGKNCELFTRKLCSLDNGDCDQFCH-EEQ 99

Query: 417 GRFNCECAPGYTGDRCEINIDDCLSHKCENNATCVDLIQAYECRCAPGF-QGEFCQTKTP 475
               C CA GYT             + C             +   + G            
Sbjct: 100 NSVVCSCARGYTLADNGKACIPTGPYPCGKQTLERRKRSVAQATSSSGEAPDSITWKPYD 159

Query: 476 FCAGEYNPCRNGARCLDHFSHYTCECTPGFSGVNC 510
                 +P  N    LD             + +  
Sbjct: 160 AADL--DPTENPFDLLDFNQTQPERGDNNLTRIVG 192

>1nfu_B Coagulation factor XA, light chain; hydrolase; HET: RRP; 2.05A {Homo sapiens} SCOP: g.3.11.1 PDB: 2h9e_L* Length = 195

 Score =  101 bits (254), Expect = 5e-25
 Identities = 25/156 (16%), Positives = 41/156 (26%), Gaps = 13/156 (8%)

Query: 439 CLSHKCENNATCVDLIQAYECRCAPGFQGEFCQTKTPFCAGEYNPCRNGARCLDHFSHYT 498
            L  +C       +  +          +          C    +PC+N  +C D    YT
Sbjct: 7   HLERECMEETCSYEEAREVFEDSDKTNEFWNKYKDGDQCET--SPCQNQGKCKDGLGEYT 64

Query: 499 CECTPGFSGVNCTVNVDD-CVNHMCQNGGTCVDGINDYTCKCEGDFVGKFCEIAPFVAMM 557
           C C  GF G NC +     C          C +  N   C C   +              
Sbjct: 65  CTCLEGFEGKNCELFTRKLCSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGK------- 117

Query: 558 YPQTSPCQHHDCKNGICFQPQGSNDYLCKCAPGYSG 593
                P   + C      + +  +      + G + 
Sbjct: 118 --ACIPTGPYPCGKQTLER-RKRSVAQATSSSGEAP 150

>1nfu_B Coagulation factor XA, light chain; hydrolase; HET: RRP; 2.05A {Homo sapiens} SCOP: g.3.11.1 PDB: 2h9e_L* Length = 195

 Score = 76.7 bits (189), Expect = 3e-16
 Identities = 27/115 (23%), Positives = 36/115 (31%), Gaps = 11/115 (9%)

Query: 482 NPCRNGARCLDHFSHYTCECTPGFSGVNCTVNVDDCVNHMCQNGGTCVDGINDYTCKCEG 541
             C       +       +        N   + D C    CQN G C DG+ +YTC C  
Sbjct: 10  RECMEETCSYEEAREVFEDSDKTNEFWNKYKDGDQCETSPCQNQGKCKDGLGEYTCTCLE 69

Query: 542 DFVGKFCEIAPFVAMMYPQTSPCQH-HDCKNGICFQPQGSNDYLCKCAPGYSGKE 595
            F GK CE+                   C           N  +C CA GY+  +
Sbjct: 70  GFEGKNCEL---FTRKLCSLDNGDCDQFCHEEQ-------NSVVCSCARGYTLAD 114

>1nfu_B Coagulation factor XA, light chain; hydrolase; HET: RRP; 2.05A {Homo sapiens} SCOP: g.3.11.1 PDB: 2h9e_L* Length = 195

 Score = 47.1 bits (112), Expect = 3e-06
 Identities = 21/71 (29%), Positives = 26/71 (36%), Gaps = 11/71 (15%)

Query: 1   NGGTCVDGINDYTCKCEGDFVGKFCEIAPFVAMMYPQTSPCQH-HDCKNGICFQPQGSND 59
           N G C DG+ +YTC C   F GK CE+                   C           N 
Sbjct: 52  NQGKCKDGLGEYTCTCLEGFEGKNCEL---FTRKLCSLDNGDCDQFCHEEQ-------NS 101

Query: 60  YLCKCAPGYSG 70
            +C CA GY+ 
Sbjct: 102 VVCSCARGYTL 112

>1nfu_B Coagulation factor XA, light chain; hydrolase; HET: RRP; 2.05A {Homo sapiens} SCOP: g.3.11.1 PDB: 2h9e_L* Length = 195

 Score = 42.0 bits (99), Expect = 2e-04
 Identities = 7/70 (10%), Positives = 15/70 (21%), Gaps = 10/70 (14%)

Query: 1   NGGTCVDGINDYTCKCEGDFVGKFCEIAPFVAMMYPQTSPCQHHDCKNGICFQPQGSNDY 60
               C +  N   C C   +                   P   + C      + +  +  
Sbjct: 91  CDQFCHEEQNSVVCSCARGYTLADNGK---------ACIPTGPYPCGKQTLER-RKRSVA 140

Query: 61  LCKCAPGYSG 70
               + G + 
Sbjct: 141 QATSSSGEAP 150

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  139 bits (353), Expect = 5e-37
 Identities = 58/270 (21%), Positives = 100/270 (37%), Gaps = 73/270 (27%)

Query: 86  AACPSGCSCDGTRVDCSQRGLKEIPKDIPLYTT------------------------ELI 121
           A CP GC C    V CS  GLK +PK+I   TT                         L+
Sbjct: 25  AMCPFGCHCHLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALV 84

Query: 122 LNDNEIGKIKSDGLFGRLP---------------------NLIKLDLRRNQVTGIEDNAF 160
           L +N+I KI  +  F  L                      +L++L +  N++  +    F
Sbjct: 85  LVNNKISKI-HEKAFSPLRKLQKLYISKNHLVEIPPNLPSSLVELRIHDNRIRKVPKGVF 143

Query: 161 EG----------ENDQGCLGDNYCPPKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYY 210
            G           N    L ++   P     +++               L  S  +++  
Sbjct: 144 SGLRNMNCIEMGGN---PLENSGFEPGAFDGLKL-------------NYLRISEAKLTGI 187

Query: 211 VGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIIS 270
             + P +     L +N+I  +        SKL +L L +N+++ I+  +L+ L +LR + 
Sbjct: 188 PKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELH 247

Query: 271 LHGNDISMIPEGAFADLHAITHLAIGGNPL 300
           L  N +S +P G   DL  +  + +  N +
Sbjct: 248 LDNNKLSRVPAG-LPDLKLLQVVYLHTNNI 276

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 89.3 bits (222), Expect = 1e-19
 Identities = 36/167 (21%), Positives = 54/167 (32%), Gaps = 39/167 (23%)

Query: 134 GLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDNYCPPKCTCTVRVLFYDGRAGE 193
                +P+L  L    + +                     CP  C C +RV+        
Sbjct: 8   ETTSGIPDLDSLPPTYSAM---------------------CPFGCHCHLRVVQ------- 39

Query: 194 CYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQ 253
           C        S + +          T   DL NN I  L    F  L  L  L+L  NK+ 
Sbjct: 40  C--------SDLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKIS 91

Query: 254 CIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIGGNPL 300
            I   A + L+ L+ + +  N +  IP    + L     L I  N +
Sbjct: 92  KIHEKAFSPLRKLQKLYISKNHLVEIPPNLPSSL---VELRIHDNRI 135

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 64.7 bits (158), Expect = 2e-11
 Identities = 13/85 (15%), Positives = 25/85 (29%), Gaps = 9/85 (10%)

Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLK------SLRIISLHGND 275
            L NN++  +       L  L  + L  N +  +  +    +           ISL  N 
Sbjct: 247 HLDNNKLSRVPA-GLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNP 305

Query: 276 ISM--IPEGAFADLHAITHLAIGGN 298
           +    +    F  +     +  G  
Sbjct: 306 VPYWEVQPATFRCVTDRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 47.3 bits (113), Expect = 7e-06
 Identities = 20/136 (14%), Positives = 38/136 (27%), Gaps = 50/136 (36%)

Query: 118 TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDNYCPPK 177
            EL L++N++ ++   GL   L  L  + L  N +T +  N F                 
Sbjct: 244 RELHLDNNKLSRV-PAGLPD-LKLLQVVYLHTNNITKVGVNDF----------------- 284

Query: 178 CTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGF--LSNFT 235
                           C +   +  +                   L NN + +  +   T
Sbjct: 285 ----------------CPVGFGVKRAYYN-------------GISLFNNPVPYWEVQPAT 315

Query: 236 FSPLSKLSQLILSYNK 251
           F  ++    +     K
Sbjct: 316 FRCVTDRLAIQFGNYK 331

>4d90_A EGF-like repeat and discoidin I-like domain-conta protein 3; RGD finger, cell adhesion, innate immunity, extracellular MA protein; HET: NGA NAG FUC; 2.60A {Homo sapiens} Length = 143

 Score =  131 bits (331), Expect = 4e-36
 Identities = 52/178 (29%), Positives = 76/178 (42%), Gaps = 45/178 (25%)

Query: 398 DACYGNPCRNSGTCK-LLEEGRFNCECAPGYTGDRCEINIDDCLSHKCENNATCVDLIQA 456
           D C  NPC N G C   L +G F+CEC  G+T   C   ++     +   +A        
Sbjct: 1   DICDPNPCENGGICLPGLADGSFSCECPDGFTDPNCSSVVEVASDEEEPTSA-------- 52

Query: 457 YECRCAPGFQGEFCQTKTPFCAGEYNPCRNGARCL-------DHFSHYTCECTPGFSGVN 509
               C P                  NPC NG  C        D F  Y C+C  GF+G++
Sbjct: 53  --GPCTP------------------NPCHNGGTCEISEAYRGDTFIGYVCKCPRGFNGIH 92

Query: 510 CTVNVDDCVNHMCQNGGTCVDGINDYTCKCEGDFVGKFCEIAPFVAMMYPQTSPCQHH 567
           C  N+++C    C+NGG C D + +Y+C+C G+F+G+ C+          +     HH
Sbjct: 93  CQHNINECEVEPCKNGGICTDLVANYSCECPGEFMGRNCQY---------KGGGHHHH 141

>4d90_A EGF-like repeat and discoidin I-like domain-conta protein 3; RGD finger, cell adhesion, innate immunity, extracellular MA protein; HET: NGA NAG FUC; 2.60A {Homo sapiens} Length = 143

 Score =  127 bits (322), Expect = 6e-35
 Identities = 42/141 (29%), Positives = 63/141 (44%), Gaps = 19/141 (13%)

Query: 361 CYKSPCTNQGVC-EPLPERQYQCRCTPGYHGQHCEFMIDA------------CYGNPCRN 407
           C  +PC N G+C   L +  + C C  G+   +C  +++             C  NPC N
Sbjct: 3   CDPNPCENGGICLPGLADGSFSCECPDGFTDPNCSSVVEVASDEEEPTSAGPCTPNPCHN 62

Query: 408 SGTCKLLEEGR------FNCECAPGYTGDRCEINIDDCLSHKCENNATCVDLIQAYECRC 461
            GTC++ E  R      + C+C  G+ G  C+ NI++C    C+N   C DL+  Y C C
Sbjct: 63  GGTCEISEAYRGDTFIGYVCKCPRGFNGIHCQHNINECEVEPCKNGGICTDLVANYSCEC 122

Query: 462 APGFQGEFCQTKTPFCAGEYN 482
              F G  CQ K       ++
Sbjct: 123 PGEFMGRNCQYKGGGHHHHHH 143

>4d90_A EGF-like repeat and discoidin I-like domain-conta protein 3; RGD finger, cell adhesion, innate immunity, extracellular MA protein; HET: NGA NAG FUC; 2.60A {Homo sapiens} Length = 143

 Score = 86.7 bits (215), Expect = 2e-20
 Identities = 29/101 (28%), Positives = 43/101 (42%), Gaps = 7/101 (6%)

Query: 348 EKVSDEILSKCNACYKSPCTNQGVCEPLPERQ------YQCRCTPGYHGQHCEFMIDACY 401
               +E  +    C  +PC N G CE     +      Y C+C  G++G HC+  I+ C 
Sbjct: 42  VASDEEEPTSAGPCTPNPCHNGGTCEISEAYRGDTFIGYVCKCPRGFNGIHCQHNINECE 101

Query: 402 GNPCRNSGTCKLLEEGRFNCECAPGYTGDRCEINIDDCLSH 442
             PC+N G C  L    ++CEC   + G  C+        H
Sbjct: 102 VEPCKNGGICTDL-VANYSCECPGEFMGRNCQYKGGGHHHH 141

>4d90_A EGF-like repeat and discoidin I-like domain-conta protein 3; RGD finger, cell adhesion, innate immunity, extracellular MA protein; HET: NGA NAG FUC; 2.60A {Homo sapiens} Length = 143

 Score = 60.1 bits (146), Expect = 4e-11
 Identities = 24/91 (26%), Positives = 36/91 (39%), Gaps = 11/91 (12%)

Query: 515 DDCVNHMCQNGGTCVDGI--NDYTCKCEGDFVGKFCEI---APFVAMMYPQTSPCQHHDC 569
           D C  + C+NGG C+ G+    ++C+C   F    C                 PC  + C
Sbjct: 1   DICDPNPCENGGICLPGLADGSFSCECPDGFTDPNCSSVVEVASDEEEPTSAGPCTPNPC 60

Query: 570 KNG-ICFQPQGS-----NDYLCKCAPGYSGK 594
            NG  C   +         Y+CKC  G++G 
Sbjct: 61  HNGGTCEISEAYRGDTFIGYVCKCPRGFNGI 91

>4d90_A EGF-like repeat and discoidin I-like domain-conta protein 3; RGD finger, cell adhesion, innate immunity, extracellular MA protein; HET: NGA NAG FUC; 2.60A {Homo sapiens} Length = 143

 Score = 49.7 bits (119), Expect = 2e-07
 Identities = 21/82 (25%), Positives = 32/82 (39%), Gaps = 11/82 (13%)

Query: 1  NGGTCVDGI--NDYTCKCEGDFVGKFCEI---APFVAMMYPQTSPCQHHDCKNG-ICFQP 54
          NGG C+ G+    ++C+C   F    C                 PC  + C NG  C   
Sbjct: 10 NGGICLPGLADGSFSCECPDGFTDPNCSSVVEVASDEEEPTSAGPCTPNPCHNGGTCEIS 69

Query: 55 QGS-----NDYLCKCAPGYSGV 71
          +         Y+CKC  G++G+
Sbjct: 70 EAYRGDTFIGYVCKCPRGFNGI 91

>4d90_A EGF-like repeat and discoidin I-like domain-conta protein 3; RGD finger, cell adhesion, innate immunity, extracellular MA protein; HET: NGA NAG FUC; 2.60A {Homo sapiens} Length = 143

 Score = 45.1 bits (107), Expect = 7e-06
 Identities = 24/79 (30%), Positives = 30/79 (37%), Gaps = 19/79 (24%)

Query: 1   NGGTCV-------DGINDYTCKCEGDFVGKFCEIAPFVAMMYPQTSPCQHHDCKNG-ICF 52
           NGGTC        D    Y CKC   F G  C+            + C+   CKNG IC 
Sbjct: 62  NGGTCEISEAYRGDTFIGYVCKCPRGFNGIHCQH---------NINECEVEPCKNGGICT 112

Query: 53  QPQGSNDYLCKCAPGYSGV 71
                 +Y C+C   + G 
Sbjct: 113 --DLVANYSCECPGEFMGR 129

>4d90_A EGF-like repeat and discoidin I-like domain-conta protein 3; RGD finger, cell adhesion, innate immunity, extracellular MA protein; HET: NGA NAG FUC; 2.60A {Homo sapiens} Length = 143

 Score = 43.6 bits (103), Expect = 2e-05
 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 9/44 (20%)

Query: 1   NGGTCVDGINDYTCKCEGDFVGKFCEIAPFVAMMYPQTSPCQHH 44
           NGG C D + +Y+C+C G+F+G+ C+          +     HH
Sbjct: 107 NGGICTDLVANYSCECPGEFMGRNCQY---------KGGGHHHH 141

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score =  135 bits (342), Expect = 6e-36
 Identities = 33/125 (26%), Positives = 54/125 (43%)

Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPE 281
            L  N+I  +    F  L  L +L+L  N++  +   A   L  L  + L  N++S +P 
Sbjct: 159 FLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPT 218

Query: 282 GAFADLHAITHLAIGGNPLYCDCGLAWLSEWVKRDYVEPGIARCTEPASMRDKLLLTAPA 341
            A A L A+ +L +  NP  CDC    L  W+++         C+ P  +  + L    A
Sbjct: 219 EALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCSLPQRLAGRDLKRLAA 278

Query: 342 SSFQC 346
           +  Q 
Sbjct: 279 NDLQG 283

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 88.9 bits (221), Expect = 1e-19
 Identities = 24/78 (30%), Positives = 33/78 (42%), Gaps = 4/78 (5%)

Query: 88  CPSGCSCDG---TRVDCSQRGLKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIK 144
           CP  C C         C Q+GL+ +P  IP  +  + L+ N I  +     F    NL  
Sbjct: 2   CPGACVCYNEPKVTTSCPQQGLQAVPVGIPAASQRIFLHGNRISHV-PAASFRACRNLTI 60

Query: 145 LDLRRNQVTGIEDNAFEG 162
           L L  N +  I+  AF G
Sbjct: 61  LWLHSNVLARIDAAAFTG 78

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 85.4 bits (212), Expect = 1e-18
 Identities = 27/80 (33%), Positives = 41/80 (51%), Gaps = 1/80 (1%)

Query: 222 DLSNN-QIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIP 280
           DLS+N Q+  +   TF  L +L  L L    LQ +      GL +L+ + L  N +  +P
Sbjct: 86  DLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALP 145

Query: 281 EGAFADLHAITHLAIGGNPL 300
           +  F DL  +THL + GN +
Sbjct: 146 DDTFRDLGNLTHLFLHGNRI 165

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 83.9 bits (208), Expect = 4e-18
 Identities = 28/129 (21%), Positives = 42/129 (32%), Gaps = 15/129 (11%)

Query: 174 CPPKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYV-GNYPVSTMYRDLSNNQIGFLS 232
           CP  C C            E  +        ++    V    P ++    L  N+I  + 
Sbjct: 2   CPGACVCY----------NEPKVTTSCPQQGLQA---VPVGIPAASQRIFLHGNRISHVP 48

Query: 233 NFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGN-DISMIPEGAFADLHAIT 291
             +F     L+ L L  N L  ID  A  GL  L  + L  N  +  +    F  L  + 
Sbjct: 49  AASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLH 108

Query: 292 HLAIGGNPL 300
            L +    L
Sbjct: 109 TLHLDRCGL 117

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 48.8 bits (117), Expect = 2e-06
 Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 1/45 (2%)

Query: 118 TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEG 162
             L L DN +  +  D  F  L NL  L L  N+++ + + AF G
Sbjct: 132 QYLYLQDNALQAL-PDDTFRDLGNLTHLFLHGNRISSVPERAFRG 175

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 48.5 bits (116), Expect = 3e-06
 Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 1/45 (2%)

Query: 118 TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEG 162
           T L L+ N I  +  +  F  L +L +L L +N+V  +  +AF  
Sbjct: 156 THLFLHGNRISSV-PERAFRGLHSLDRLLLHQNRVAHVHPHAFRD 199

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 46.1 bits (110), Expect = 1e-05
 Identities = 12/45 (26%), Positives = 20/45 (44%), Gaps = 1/45 (2%)

Query: 118 TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEG 162
             L L+   + ++   GLF  L  L  L L+ N +  + D+ F  
Sbjct: 108 HTLHLDRCGLQEL-GPGLFRGLAALQYLYLQDNALQALPDDTFRD 151

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 42.7 bits (101), Expect = 2e-04
 Identities = 10/45 (22%), Positives = 18/45 (40%), Gaps = 1/45 (2%)

Query: 118 TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEG 162
             L+L+ N +  +     F  L  L+ L L  N ++ +   A   
Sbjct: 180 DRLLLHQNRVAHV-HPHAFRDLGRLMTLYLFANNLSALPTEALAP 223

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score =  134 bits (340), Expect = 8e-36
 Identities = 64/281 (22%), Positives = 106/281 (37%), Gaps = 58/281 (20%)

Query: 86  AACPSGCSCDGT--RVDCSQRGLKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLI 143
                 CSC+     VDCS + L  IP +IP  T +L L  N++  +     F RL  L 
Sbjct: 6   KKDGGVCSCNNNKNSVDCSSKKLTAIPSNIPADTKKLDLQSNKLSSL-PSKAFHRLTKLR 64

Query: 144 KLDLRRNQVTGIEDNAFEGENDQGCLGDNYCPPKCTCTVRVLFYDGRAGECYIAVELFSS 203
            L L  N++  +    F+   +   L                            + +  +
Sbjct: 65  LLYLNDNKLQTLPAGIFKELKN---LET--------------------------LWVTDN 95

Query: 204 RIR-VSYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAG 262
           +++ +   V +  V+     L  NQ+  L    F  L+KL+ L L YN+LQ + +     
Sbjct: 96  KLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDK 155

Query: 263 LKSLRIISLHGNDISMIPEGAFADL------------------------HAITHLAIGGN 298
           L SL+ + L+ N +  +PEGAF  L                          +  L +  N
Sbjct: 156 LTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215

Query: 299 PLYCDC-GLAWLSEWVKRDYVEPGIARCTEPASMRDKLLLT 338
           P  C C G+ ++++W+K+   E      T       K +L 
Sbjct: 216 PWDCTCNGIIYMAKWLKKKADEGLGGVDTAGCEKGGKAVLE 256

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  140 bits (356), Expect = 1e-35
 Identities = 39/239 (16%), Positives = 62/239 (25%), Gaps = 62/239 (25%)

Query: 118 TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIED----------------NAFE 161
             L    + + ++     F  L  L+ LD+         D                N+F+
Sbjct: 402 QHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFK 461

Query: 162 GENDQGCLGDNYCPPKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYR 221
                    +          +  L                                    
Sbjct: 462 DNTLSNVFANTT-------NLTFL------------------------------------ 478

Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPE 281
           DLS  Q+  +S   F  L +L  L +S+N L  +D      L SL  +    N I     
Sbjct: 479 DLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKG 538

Query: 282 GAFADLHAITHLAIGGNPLYCDCGLAWLSEWVKRDYV---EPGIARCTEPASMRDKLLL 337
                  ++    +  N + C C      +WVK             C  P  M   L+L
Sbjct: 539 ILQHFPKSLAFFNLTNNSVACICEHQKFLQWVKEQKQFLVNVEQMTCATPVEMNTSLVL 597

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 91.2 bits (227), Expect = 2e-19
 Identities = 34/127 (26%), Positives = 53/127 (41%), Gaps = 13/127 (10%)

Query: 174 CPPKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSN 233
               C   V  + Y      C           ++S    + P ST   DLS N +  L +
Sbjct: 3   SLNPCIEVVPNITYQ-----C--------MDQKLSKVPDDIPSSTKNIDLSFNPLKILKS 49

Query: 234 FTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHL 293
           ++FS  S+L  L LS  +++ I+  A  GL  L  + L GN I     G+F+ L ++ +L
Sbjct: 50  YSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENL 109

Query: 294 AIGGNPL 300
                 L
Sbjct: 110 VAVETKL 116

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 90.9 bits (226), Expect = 2e-19
 Identities = 23/75 (30%), Positives = 33/75 (44%), Gaps = 1/75 (1%)

Query: 88  CPSGCSCDGTRVDCSQRGLKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDL 147
            P           C  + L ++P DIP  T  + L+ N +  +KS   F     L  LDL
Sbjct: 5   NPCIEVVPNITYQCMDQKLSKVPDDIPSSTKNIDLSFNPLKILKSY-SFSNFSELQWLDL 63

Query: 148 RRNQVTGIEDNAFEG 162
            R ++  IED A+ G
Sbjct: 64  SRCEIETIEDKAWHG 78

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 87.0 bits (216), Expect = 4e-18
 Identities = 19/79 (24%), Positives = 34/79 (43%)

Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPE 281
           DLS  +I  + +  +  L  LS LIL+ N +Q     + +GL SL  +      ++ +  
Sbjct: 62  DLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLES 121

Query: 282 GAFADLHAITHLAIGGNPL 300
                L  +  L +  N +
Sbjct: 122 FPIGQLITLKKLNVAHNFI 140

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 87.0 bits (216), Expect = 4e-18
 Identities = 36/192 (18%), Positives = 63/192 (32%), Gaps = 22/192 (11%)

Query: 115 LYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDN-- 172
           +   E  L             F  L N+  + L    +  +ED     +     +     
Sbjct: 261 VTIDEFRLTYTNDFSDDI-VKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQL 319

Query: 173 -YCPPKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFL 231
              P      ++ L              L  ++  +S+     P S  Y DLS N + F 
Sbjct: 320 KQFPTLDLPFLKSL-------------TLTMNKGSISFKKVALP-SLSYLDLSRNALSFS 365

Query: 232 SNFTFSPL--SKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPE-GAFADLH 288
              ++S L  + L  L LS+N    +      GL+ L+ +    + +  + E  AF  L 
Sbjct: 366 GCCSYSDLGTNSLRHLDLSFNGAIIMS-ANFMGLEELQHLDFQHSTLKRVTEFSAFLSLE 424

Query: 289 AITHLAIGGNPL 300
            + +L I     
Sbjct: 425 KLLYLDISYTNT 436

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 79.3 bits (196), Expect = 1e-15
 Identities = 20/80 (25%), Positives = 38/80 (47%), Gaps = 1/80 (1%)

Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPE 281
            L+ N I   S  +FS L+ L  L+    KL  ++   +  L +L+ +++  N I     
Sbjct: 86  ILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKL 145

Query: 282 GA-FADLHAITHLAIGGNPL 300
            A F++L  + H+ +  N +
Sbjct: 146 PAYFSNLTNLVHVDLSYNYI 165

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 76.6 bits (189), Expect = 7e-15
 Identities = 33/197 (16%), Positives = 63/197 (31%), Gaps = 26/197 (13%)

Query: 118 TELILNDNEIGKIKSD---GLFGRLPNLIKLDLRRNQVTGIEDNAFEGEN----DQGCLG 170
             + L+ N I  I  +    L       + LD+  N +  I+D AF+G          L 
Sbjct: 156 VHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELT---LR 212

Query: 171 DNY----CPPKCTCTV---RVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDL 223
            N+        C   +    V        +    +E+F      S   G   V+     L
Sbjct: 213 GNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEP----SIMEGLCDVTIDEFRL 268

Query: 224 SNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGA 283
           +           F  L+ +S + L+   ++ +  + +      + +S+    +   P   
Sbjct: 269 TYTNDFSDDIVKFHCLANVSAMSLAGVSIKYL--EDVPKHFKWQSLSIIRCQLKQFP--- 323

Query: 284 FADLHAITHLAIGGNPL 300
             DL  +  L +  N  
Sbjct: 324 TLDLPFLKSLTLTMNKG 340

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 73.9 bits (182), Expect = 5e-14
 Identities = 31/183 (16%), Positives = 50/183 (27%), Gaps = 56/183 (30%)

Query: 118 TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDNYCPPK 177
            +L +  N I   K    F  L NL+ +DL  N +  I  N  +                
Sbjct: 131 KKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQF--------------- 175

Query: 178 CTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSNFTFS 237
                                            +   P   +  D+S N I F+ +  F 
Sbjct: 176 ---------------------------------LRENPQVNLSLDMSLNPIDFIQDQAFQ 202

Query: 238 PLSKLSQLILSYNKLQC-IDRDALAGLKSLRIISL------HGNDISMIPEGAFADLHAI 290
            +  L +L L  N     I +  L  L  L +  L         ++ +        L  +
Sbjct: 203 GIK-LHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDV 261

Query: 291 THL 293
           T  
Sbjct: 262 TID 264

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 70.1 bits (172), Expect = 8e-13
 Identities = 35/217 (16%), Positives = 58/217 (26%), Gaps = 43/217 (19%)

Query: 106 LKEIPKDI--PLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTG------IED 157
           +  I       +   EL L  N             L  L    L   +          E 
Sbjct: 193 IDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEP 252

Query: 158 NAFEGENDQGCLGDNYCPPKCTCTVRVLFYDGRAGEC-YIAVELFS--SRIRVSYYVGNY 214
           +  EG                 C V +  +           +  F   + +      G  
Sbjct: 253 SIMEG----------------LCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVS 296

Query: 215 -----PVSTMYR----DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKS 265
                 V   ++     +   Q+     F    L  L  L L+ NK           L S
Sbjct: 297 IKYLEDVPKHFKWQSLSIIRCQL---KQFPTLDLPFLKSLTLTMNKGSIS--FKKVALPS 351

Query: 266 LRIISLHGNDISMIPEGAFADL--HAITHLAIGGNPL 300
           L  + L  N +S     +++DL  +++ HL +  N  
Sbjct: 352 LSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGA 388

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 68.9 bits (169), Expect = 2e-12
 Identities = 22/84 (26%), Positives = 37/84 (44%), Gaps = 6/84 (7%)

Query: 222 DLSNNQIGFLS-NFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRI----ISLHGNDI 276
           ++++N I        FS L+ L  + LSYN +Q I  + L  L+        + +  N I
Sbjct: 134 NVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPI 193

Query: 277 SMIPEGAFADLHAITHLAIGGNPL 300
             I + AF  +  +  L + GN  
Sbjct: 194 DFIQDQAFQGIK-LHELTLRGNFN 216

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 49.6 bits (119), Expect = 2e-06
 Identities = 31/207 (14%), Positives = 61/207 (29%), Gaps = 55/207 (26%)

Query: 106 LKEIPKDIPLYT-TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGEN 164
           +K +      +    L +   ++ +         LP L  L L  N+ +           
Sbjct: 297 IKYLEDVPKHFKWQSLSIIRCQLKQF----PTLDLPFLKSLTLTMNKGSISFKKVA---- 348

Query: 165 DQGCLGDNYCPPKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLS 224
                     P     ++  L              L  + +  S           Y DL 
Sbjct: 349 ---------LP-----SLSYLD-------------LSRNALSFSG-------CCSYSDLG 374

Query: 225 NNQIGFLSNFTFSPLSKLSQLILSYNKLQCID-----------RDALAGLKSLRIISLHG 273
            N +  L + +F+    +S   +   +LQ +D             A   L+ L  + +  
Sbjct: 375 TNSLRHL-DLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISY 433

Query: 274 NDISMIPEGAFADLHAITHLAIGGNPL 300
            +  +  +G F  L ++  L + GN  
Sbjct: 434 TNTKIDFDGIFLGLTSLNTLKMAGNSF 460

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 43.5 bits (103), Expect = 2e-04
 Identities = 9/63 (14%), Positives = 22/63 (34%), Gaps = 4/63 (6%)

Query: 105 GLKEIPKDIPLYTT---ELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFE 161
            L++I   +         L ++ N +  +     + +L +L  LD   N++   +     
Sbjct: 484 QLEQISWGVFDTLHRLQLLNMSHNNLLFL-DSSHYNQLYSLSTLDCSFNRIETSKGILQH 542

Query: 162 GEN 164
              
Sbjct: 543 FPK 545

>2vj2_A Jagged-1; signalling, polymorphism, glycoprotein, extracellular, developmental protein, notch signaling pathway, EGF, DSL, notch, calcium, membrane; 2.50A {Homo sapiens} PDB: 2kb9_A Length = 169

 Score =  130 bits (329), Expect = 2e-35
 Identities = 45/192 (23%), Positives = 66/192 (34%), Gaps = 26/192 (13%)

Query: 361 CYKSPCTNQGVCEPLPERQYQCRCTPGYHGQHCEFMIDACYGNPCRNSGTCKLLEEGRFN 420
                  + G  E     +    C   Y+G  C         +       C    +   N
Sbjct: 2   RGSHHHHHHGSIE----GRSAVTCDDYYYGFGCN--KFCRPRDDFFGHYAC----DQNGN 51

Query: 421 CECAPGYTGDRCEINIDDCLSHKCENNATCVDLIQAYECRCAPGFQGEFCQTKTPFCAGE 480
             C  G+ G  C   I  C       + +C       +CRC  G+QG +C    P     
Sbjct: 52  KTCMEGWMGPECNRAI--CRQGCSPKHGSCKL---PGDCRCQYGWQGLYCDKCIP----- 101

Query: 481 YNPCRNGARCLDHFSHYTCECTPGFSGVNCTVNVDDCVNHM-CQNGGTCVD-GINDYTCK 538
            +P      C +    + C C   + G  C  +++ C  H  C NGGTC + G + Y C 
Sbjct: 102 -HPGCVHGICNE---PWQCLCETNWGGQLCDKDLNYCGTHQPCLNGGTCSNTGPDKYQCS 157

Query: 539 CEGDFVGKFCEI 550
           C   + G  CEI
Sbjct: 158 CPEGYSGPNCEI 169

>2vj2_A Jagged-1; signalling, polymorphism, glycoprotein, extracellular, developmental protein, notch signaling pathway, EGF, DSL, notch, calcium, membrane; 2.50A {Homo sapiens} PDB: 2kb9_A Length = 169

 Score = 86.6 bits (215), Expect = 5e-20
 Identities = 30/115 (26%), Positives = 47/115 (40%), Gaps = 14/115 (12%)

Query: 359 NACYKSPCTNQGVCEPLPERQYQCRCTPGYHGQHCEFMIDACYGNPCRNSGTCKLLEEGR 418
             C +      G C+        CRC  G+ G +C    D C  +P    G C       
Sbjct: 66  AICRQGCSPKHGSCK----LPGDCRCQYGWQGLYC----DKCIPHPGCVHGICN----EP 113

Query: 419 FNCECAPGYTGDRCEINIDDCLSHK-CENNATCVDLIQ-AYECRCAPGFQGEFCQ 471
           + C C   + G  C+ +++ C +H+ C N  TC +     Y+C C  G+ G  C+
Sbjct: 114 WQCLCETNWGGQLCDKDLNYCGTHQPCLNGGTCSNTGPDKYQCSCPEGYSGPNCE 168

>2vj2_A Jagged-1; signalling, polymorphism, glycoprotein, extracellular, developmental protein, notch signaling pathway, EGF, DSL, notch, calcium, membrane; 2.50A {Homo sapiens} PDB: 2kb9_A Length = 169

 Score = 70.1 bits (172), Expect = 2e-14
 Identities = 26/78 (33%), Positives = 36/78 (46%), Gaps = 5/78 (6%)

Query: 358 CNACYKSPCTNQGVCEPLPERQYQCRCTPGYHGQHCEFMIDACY-GNPCRNSGTCKLLEE 416
           C+ C   P    G+C       +QC C   + GQ C+  ++ C    PC N GTC     
Sbjct: 96  CDKCIPHPGCVHGICN----EPWQCLCETNWGGQLCDKDLNYCGTHQPCLNGGTCSNTGP 151

Query: 417 GRFNCECAPGYTGDRCEI 434
            ++ C C  GY+G  CEI
Sbjct: 152 DKYQCSCPEGYSGPNCEI 169

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  138 bits (351), Expect = 4e-35
 Identities = 43/227 (18%), Positives = 74/227 (32%), Gaps = 37/227 (16%)

Query: 118 TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDNYCPPK 177
             L L    +    +   F  L  L  L+L  + +    +  F+G               
Sbjct: 403 ELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDG--------------- 447

Query: 178 CTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYR----DLSNNQIGFLSN 233
               ++ L              L  +            + T+ R     LS   +  +  
Sbjct: 448 -LPALQHL-------------NLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQ 493

Query: 234 FTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHL 293
             F+ L  ++ + LS+N+L     +AL+ LK +  ++L  N IS+I       L     +
Sbjct: 494 HAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIY-LNLASNHISIILPSLLPILSQQRTI 552

Query: 294 AIGGNPLYCDCGLAWLSEWVKR---DYVEPGIARCTEPASMRDKLLL 337
            +  NPL C C   +  EW K       +     C  P  +R   L 
Sbjct: 553 NLRQNPLDCTCSNIYFLEWYKENMQKLEDTEDTLCENPPLLRGVRLS 599

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  119 bits (301), Expect = 1e-28
 Identities = 40/217 (18%), Positives = 63/217 (29%), Gaps = 55/217 (25%)

Query: 86  AACPSGCSCD--GTRVDCSQRGLKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLI 143
            +    C         +C   GL EIP  +P  T  L  + N +  I++   F RL NL 
Sbjct: 2   TSSDQKCIEKEVNKTYNCENLGLNEIPGTLPNSTECLEFSFNVLPTIQN-TTFSRLINLT 60

Query: 144 KLDLRRNQVTGIEDNAFEGENDQGCLGDNYCPPKCTCTVRVLFYDGRAGECYIAVELFSS 203
            LDL R Q+  I ++ F+                    +  L              L ++
Sbjct: 61  FLDLTRCQIYWIHEDTFQS------QHR----------LDTL-------------VLTAN 91

Query: 204 RIRVSYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGL 263
            +                 ++   +             L  L      +  ID   L   
Sbjct: 92  PLIF---------------MAETALSGPKA--------LKHLFFIQTGISSIDFIPLHNQ 128

Query: 264 KSLRIISLHGNDISMIPEGAFADLHAITHLAIGGNPL 300
           K+L  + L  N IS I          +  L    N +
Sbjct: 129 KTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAI 165

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 91.2 bits (227), Expect = 2e-19
 Identities = 31/194 (15%), Positives = 52/194 (26%), Gaps = 23/194 (11%)

Query: 118 TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEG----ENDQGCLGDN- 172
             L L  N I  I           L  LD + N +  +            N    L  N 
Sbjct: 132 ESLYLGSNHISSI-KLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGND 190

Query: 173 --YCPPKCTC--TVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQI 228
                P        + L + G        + +F           +   S       +   
Sbjct: 191 IAGIEPGAFDSAVFQSLNFGG----TQNLLVIFKG------LKNSTIQSLWLGTFEDMDD 240

Query: 229 GFLSNFTFSPLSKLS--QLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFAD 286
             +S   F  L ++S   + L  +    I  +       L+ + L    +S +P G    
Sbjct: 241 EDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSG-LVG 299

Query: 287 LHAITHLAIGGNPL 300
           L  +  L +  N  
Sbjct: 300 LSTLKKLVLSANKF 313

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 91.2 bits (227), Expect = 2e-19
 Identities = 32/199 (16%), Positives = 57/199 (28%), Gaps = 54/199 (27%)

Query: 106 LKEIPKDI--PLYTTELILNDNEIGKIKSDGL-FGRLPNLIKLDLRRNQVTGIEDNAFEG 162
           +  I            L     +   +   GL    + +L            I    FEG
Sbjct: 191 IAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEG 250

Query: 163 ENDQGCLGDNYCPPKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRD 222
                          C  +V  +                                    +
Sbjct: 251 L--------------CEMSVESI------------------------------------N 260

Query: 223 LSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEG 282
           L  +    +S+ TF   S L +L L+   L  +    L GL +L+ + L  N    + + 
Sbjct: 261 LQKHYFFNISSNTFHCFSGLQELDLTATHLSELP-SGLVGLSTLKKLVLSANKFENLCQI 319

Query: 283 AFADLHAITHLAIGGNPLY 301
           + ++  ++THL+I GN   
Sbjct: 320 SASNFPSLTHLSIKGNTKR 338

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 87.0 bits (216), Expect = 4e-18
 Identities = 39/200 (19%), Positives = 65/200 (32%), Gaps = 57/200 (28%)

Query: 106 LKEIPKDI-PLYT-TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGE 163
           L E+P  +  L T  +L+L+ N+   +         P+L  L ++         N    E
Sbjct: 290 LSELPSGLVGLSTLKKLVLSANKFENL-CQISASNFPSLTHLSIKG--------NTKRLE 340

Query: 164 NDQGCLGDNYCPPKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDL 223
              GCL +          +R L                                    DL
Sbjct: 341 LGTGCLENLE-------NLREL------------------------------------DL 357

Query: 224 SNNQIGFL--SNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMI-P 280
           S++ I      N     LS L  L LSYN+   +  +A      L ++ L    + +   
Sbjct: 358 SHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDA 417

Query: 281 EGAFADLHAITHLAIGGNPL 300
           +  F +LH +  L +  + L
Sbjct: 418 QSPFQNLHLLKVLNLSHSLL 437

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 83.9 bits (208), Expect = 4e-17
 Identities = 14/81 (17%), Positives = 26/81 (32%), Gaps = 2/81 (2%)

Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPE 281
                 I  +          L  L L  N +  I        + L+++    N I  + +
Sbjct: 111 FFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSK 170

Query: 282 GAFADLHAITH--LAIGGNPL 300
              + L   T+  L + GN +
Sbjct: 171 EDMSSLQQATNLSLNLNGNDI 191

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  136 bits (343), Expect = 1e-34
 Identities = 39/129 (30%), Positives = 64/129 (49%), Gaps = 2/129 (1%)

Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPE 281
           ++S N    +   +F  LS L +L +  +++  I+R+A  GL SL  ++L  N++S +P 
Sbjct: 224 EMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPH 283

Query: 282 GAFADLHAITHLAIGGNPLYCDCGLAWLSEWVKR--DYVEPGIARCTEPASMRDKLLLTA 339
             F  L  +  L +  NP  CDC + WL+ W++           RC  P  MR + L+  
Sbjct: 284 DLFTPLRYLVELHLHHNPWNCDCDILWLAWWLREYIPTNSTCCGRCHAPMHMRGRYLVEV 343

Query: 340 PASSFQCKE 348
             +SFQC  
Sbjct: 344 DQASFQCSA 352

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 91.7 bits (228), Expect = 7e-20
 Identities = 33/78 (42%), Positives = 44/78 (56%), Gaps = 3/78 (3%)

Query: 87  ACPSGCSCDG--TRVDCSQRGLKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIK 144
            CPS CSC    ++V C++RGL E+P+ IP  T  L L +N I  I++   F  L +L  
Sbjct: 45  NCPSVCSCSNQFSKVVCTRRGLSEVPQGIPSNTRYLNLMENNIQMIQA-DTFRHLHHLEV 103

Query: 145 LDLRRNQVTGIEDNAFEG 162
           L L RN +  IE  AF G
Sbjct: 104 LQLGRNSIRQIEVGAFNG 121

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 89.4 bits (222), Expect = 4e-19
 Identities = 36/128 (28%), Positives = 53/128 (41%), Gaps = 15/128 (11%)

Query: 174 CPPKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYV-GNYPVSTMYRDLSNNQIGFLS 232
           CP  C+C+ +              V      +     V    P +T Y +L  N I  + 
Sbjct: 46  CPSVCSCSNQFS-----------KVVCTRRGLS---EVPQGIPSNTRYLNLMENNIQMIQ 91

Query: 233 NFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITH 292
             TF  L  L  L L  N ++ I+  A  GL SL  + L  N +++IP GAF  L  +  
Sbjct: 92  ADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRE 151

Query: 293 LAIGGNPL 300
           L +  NP+
Sbjct: 152 LWLRNNPI 159

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 85.2 bits (211), Expect = 8e-18
 Identities = 24/77 (31%), Positives = 33/77 (42%)

Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPE 281
            L  N I  +    F+ L+ L+ L L  N L  I   A   L  LR + L  N I  IP 
Sbjct: 105 QLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPS 164

Query: 282 GAFADLHAITHLAIGGN 298
            AF  + ++  L +G  
Sbjct: 165 YAFNRVPSLMRLDLGEL 181

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 49.7 bits (119), Expect = 2e-06
 Identities = 22/58 (37%), Positives = 33/58 (56%), Gaps = 2/58 (3%)

Query: 106 LKEIPKDIPLYT-TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEG 162
           +K++P   PL    EL ++ N   +I   G F  L +L KL +  +QV+ IE NAF+G
Sbjct: 208 IKDMPNLTPLVGLEELEMSGNHFPEI-RPGSFHGLSSLKKLWVMNSQVSLIERNAFDG 264

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 47.8 bits (114), Expect = 8e-06
 Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 5/61 (8%)

Query: 106 LKEIPKDIPLYTT---ELILNDNEIGKIKSDGLFGRLPNLIKLDLRR-NQVTGIEDNAFE 161
           L  IP     Y +   EL L +N I  I     F R+P+L++LDL    ++  I + AFE
Sbjct: 135 LTVIPSGAFEYLSKLRELWLRNNPIESI-PSYAFNRVPSLMRLDLGELKKLEYISEGAFE 193

Query: 162 G 162
           G
Sbjct: 194 G 194

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 43.6 bits (103), Expect = 1e-04
 Identities = 9/45 (20%), Positives = 23/45 (51%), Gaps = 1/45 (2%)

Query: 118 TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEG 162
            +L + ++++  I     F  L +L++L+L  N ++ +  + F  
Sbjct: 245 KKLWVMNSQVSLI-ERNAFDGLASLVELNLAHNNLSSLPHDLFTP 288

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 43.2 bits (102), Expect = 2e-04
 Identities = 10/45 (22%), Positives = 16/45 (35%), Gaps = 3/45 (6%)

Query: 118 TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEG 162
             L L    I  + +      L  L +L++  N    I   +F G
Sbjct: 199 KYLNLGMCNIKDMPN---LTPLVGLEELEMSGNHFPEIRPGSFHG 240

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  131 bits (331), Expect = 5e-34
 Identities = 58/267 (21%), Positives = 88/267 (32%), Gaps = 89/267 (33%)

Query: 86  AACPSGCSCDGTRVDCSQRGLKEIPKDIPLYTT------------------------ELI 121
             CP  C C    V CS  GL+++PKD+P  T                          LI
Sbjct: 23  PVCPFRCQCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLI 82

Query: 122 LNDNEIGKIKSDGLFGRL---------------------PNLIKLDLRRNQVTGIEDNAF 160
           L +N+I KI S G F  L                       L +L +  N++T +  + F
Sbjct: 83  LINNKISKI-SPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVF 141

Query: 161 EG-------ENDQGCLGDNYCPPKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGN 213
            G       E     LG N                       I    F    ++      
Sbjct: 142 NGLNQMIVVE-----LGTN-----------------PLKSSGIENGAFQGMKKL------ 173

Query: 214 YPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHG 273
                 Y  +++  I  +          L++L L  NK+  +D  +L GL +L  + L  
Sbjct: 174 -----SYIRIADTNITTIPQGLPP---SLTELHLDGNKITKVDAASLKGLNNLAKLGLSF 225

Query: 274 NDISMIPEGAFADLHAITHLAIGGNPL 300
           N IS +  G+ A+   +  L +  N L
Sbjct: 226 NSISAVDNGSLANTPHLRELHLNNNKL 252

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 85.4 bits (212), Expect = 2e-18
 Identities = 22/79 (27%), Positives = 39/79 (49%), Gaps = 1/79 (1%)

Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPE 281
            L  N+I  +   +   L+ L++L LS+N +  +D  +LA    LR + L+ N +  +P 
Sbjct: 198 HLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVP- 256

Query: 282 GAFADLHAITHLAIGGNPL 300
           G  AD   I  + +  N +
Sbjct: 257 GGLADHKYIQVVYLHNNNI 275

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 80.8 bits (200), Expect = 9e-17
 Identities = 23/85 (27%), Positives = 40/85 (47%), Gaps = 7/85 (8%)

Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPE 281
            LS N I  + N + +    L +L L+ NKL  +    LA  K ++++ LH N+IS I  
Sbjct: 222 GLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVP-GGLADHKYIQVVYLHNNNISAIGS 280

Query: 282 GAFA------DLHAITHLAIGGNPL 300
             F          + + +++  NP+
Sbjct: 281 NDFCPPGYNTKKASYSGVSLFSNPV 305

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 66.6 bits (163), Expect = 5e-12
 Identities = 13/85 (15%), Positives = 28/85 (32%), Gaps = 9/85 (10%)

Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALA------GLKSLRIISLHGND 275
            L+NN++  +     +    +  + L  N +  I  +            S   +SL  N 
Sbjct: 246 HLNNNKLVKVPG-GLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNP 304

Query: 276 ISM--IPEGAFADLHAITHLAIGGN 298
           +    I    F  ++    + +G  
Sbjct: 305 VQYWEIQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 47.7 bits (114), Expect = 5e-06
 Identities = 22/136 (16%), Positives = 38/136 (27%), Gaps = 50/136 (36%)

Query: 118 TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDNYCPPK 177
            EL LN+N++ K+   GL      +  + L  N ++ I  N F             CPP 
Sbjct: 243 RELHLNNNKLVKV-PGGLAD-HKYIQVVYLHNNNISAIGSNDF-------------CPPG 287

Query: 178 CTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGF--LSNFT 235
                                 +                      L +N + +  +   T
Sbjct: 288 YNTKKASY------------SGV---------------------SLFSNPVQYWEIQPST 314

Query: 236 FSPLSKLSQLILSYNK 251
           F  +   + + L   K
Sbjct: 315 FRCVYVRAAVQLGNYK 330

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 41.9 bits (99), Expect = 4e-04
 Identities = 13/66 (19%), Positives = 26/66 (39%), Gaps = 9/66 (13%)

Query: 106 LKEIPKDIPLYT--TELILNDNEIGKIKSD-----GLFGRLPNLIKLDLRRNQV--TGIE 156
           L ++P  +  +     + L++N I  I S+     G   +  +   + L  N V    I+
Sbjct: 252 LVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQ 311

Query: 157 DNAFEG 162
            + F  
Sbjct: 312 PSTFRC 317

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score =  127 bits (322), Expect = 7e-34
 Identities = 42/126 (33%), Positives = 67/126 (53%)

Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPE 281
            L  N+I  L    F  L  L  L+L+ NK+ C+  DA   L +L ++SL+ N +  I +
Sbjct: 86  VLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAK 145

Query: 282 GAFADLHAITHLAIGGNPLYCDCGLAWLSEWVKRDYVEPGIARCTEPASMRDKLLLTAPA 341
           G F+ L AI  + +  NP  CDC L WL++++  + +E   ARCT P  + +K +    +
Sbjct: 146 GTFSPLRAIQTMHLAQNPFICDCHLKWLADYLHTNPIETSGARCTSPRRLANKRIGQIKS 205

Query: 342 SSFQCK 347
             F+C 
Sbjct: 206 KKFRCS 211

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 92.4 bits (230), Expect = 1e-21
 Identities = 29/78 (37%), Positives = 42/78 (53%), Gaps = 1/78 (1%)

Query: 85  DAACPSGCSCDGTRVDCSQRGLKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIK 144
              CP+ C+C    VDC  +GL EIP ++P   TE+ L  N I  I   G F     L +
Sbjct: 2   SLHCPAACTCSNNIVDCRGKGLTEIPTNLPETITEIRLEQNTIKVI-PPGAFSPYKKLRR 60

Query: 145 LDLRRNQVTGIEDNAFEG 162
           +DL  NQ++ +  +AF+G
Sbjct: 61  IDLSNNQISELAPDAFQG 78

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score =  127 bits (321), Expect = 7e-34
 Identities = 40/127 (31%), Positives = 72/127 (56%)

Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPE 281
            L++N++  + +  F  L  L  L+L  N++ C+  D+  GL S+R++SL+ N I+ +  
Sbjct: 87  LLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAP 146

Query: 282 GAFADLHAITHLAIGGNPLYCDCGLAWLSEWVKRDYVEPGIARCTEPASMRDKLLLTAPA 341
           GAF  LH+++ L +  NP  C+C LAWL EW+++  +  G  RC +P  +++  +     
Sbjct: 147 GAFDTLHSLSTLNLLANPFNCNCYLAWLGEWLRKKRIVTGNPRCQKPYFLKEIPIQDVAI 206

Query: 342 SSFQCKE 348
             F C +
Sbjct: 207 QDFTCDD 213

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score =  106 bits (266), Expect = 2e-26
 Identities = 38/77 (49%), Positives = 53/77 (68%)

Query: 86  AACPSGCSCDGTRVDCSQRGLKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKL 145
            ACP  C C+GT VDCS + L +IP+ IP YT EL LN+NE   +++ G+F +LP L K+
Sbjct: 3   LACPEKCRCEGTTVDCSNQKLNKIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKI 62

Query: 146 DLRRNQVTGIEDNAFEG 162
           +   N++T IE+ AFEG
Sbjct: 63  NFSNNKITDIEEGAFEG 79

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  130 bits (328), Expect = 8e-34
 Identities = 51/225 (22%), Positives = 84/225 (37%), Gaps = 50/225 (22%)

Query: 88  CPSGCSCDGTRVDCSQRGLKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDL 147
           CPS CSC GT + C+ +GL  +P  IP   T L L  N++  +   G+F +L  L KL L
Sbjct: 1   CPSRCSCSGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQSL-PHGVFDKLTQLTKLSL 59

Query: 148 RRNQVT--GIEDNAFEGENDQGCLGDNYCPPKCTCTVRVLFYDGRAGECYIAVELFSSRI 205
             N ++  G    +  G                T +++ L             +L  + +
Sbjct: 60  SSNGLSFKGCCSQSDFG----------------TTSLKYL-------------DLSFNGV 90

Query: 206 RVSYYVGNYPVSTMYRDLSN--------NQIGFLSNF-TFSPLSKLSQLILSYNKLQCID 256
                     +S+ +  L          + +  +S F  F  L  L  L +S+   +   
Sbjct: 91  IT--------MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAF 142

Query: 257 RDALAGLKSLRIISLHGN-DISMIPEGAFADLHAITHLAIGGNPL 300
                GL SL ++ + GN          F +L  +T L +    L
Sbjct: 143 NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL 187

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  105 bits (263), Expect = 4e-25
 Identities = 25/145 (17%), Positives = 49/145 (33%), Gaps = 29/145 (20%)

Query: 222 DLSNNQ-IGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIP 280
            ++ N          F+ L  L+ L LS  +L+ +   A   L SL+++++  N+   + 
Sbjct: 156 KMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLD 215

Query: 281 EGAFADLH-------------------------AITHLAIGGNPLYCDCGLAWLSEWVKR 315
              +  L+                         ++  L +  N   C C      +W+K 
Sbjct: 216 TFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKD 275

Query: 316 ---DYVEPGIARCTEPASMRDKLLL 337
                VE     C  P+  +   +L
Sbjct: 276 QRQLLVEVERMECATPSDKQGMPVL 300

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 47.7 bits (114), Expect = 5e-06
 Identities = 9/45 (20%), Positives = 21/45 (46%), Gaps = 1/45 (2%)

Query: 118 TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEG 162
           T L L+  ++ ++ S   F  L +L  L++  N    ++   ++ 
Sbjct: 178 TFLDLSQCQLEQL-SPTAFNSLSSLQVLNMSHNNFFSLDTFPYKC 221

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 44.6 bits (106), Expect = 5e-05
 Identities = 12/45 (26%), Positives = 18/45 (40%)

Query: 118 TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEG 162
             L +  N   +     +F  L NL  LDL + Q+  +   AF  
Sbjct: 153 EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNS 197

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 43.8 bits (104), Expect = 9e-05
 Identities = 7/45 (15%), Positives = 15/45 (33%), Gaps = 1/45 (2%)

Query: 118 TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEG 162
             L ++ N    +     +  L +L  LD   N +   +    + 
Sbjct: 202 QVLNMSHNNFFSL-DTFPYKCLNSLQVLDYSLNHIMTSKKQELQH 245

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  132 bits (335), Expect = 8e-34
 Identities = 37/129 (28%), Positives = 66/129 (51%), Gaps = 2/129 (1%)

Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPE 281
           DLS N +  +   +F  L  L +L +  +++Q I+R+A   L+SL  I+L  N+++++P 
Sbjct: 213 DLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPH 272

Query: 282 GAFADLHAITHLAIGGNPLYCDCGLAWLSEWVK--RDYVEPGIARCTEPASMRDKLLLTA 339
             F  LH +  + +  NP  C+C + WLS W+K          ARC  P +++ + +   
Sbjct: 273 DLFTPLHHLERIHLHHNPWNCNCDILWLSWWIKDMAPSNTACCARCNTPPNLKGRYIGEL 332

Query: 340 PASSFQCKE 348
             + F C  
Sbjct: 333 DQNYFTCYA 341

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 89.4 bits (222), Expect = 3e-19
 Identities = 31/79 (39%), Positives = 42/79 (53%), Gaps = 3/79 (3%)

Query: 86  AACPSGCSCDG--TRVDCSQRGLKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLI 143
             CPS CSC    ++V C ++ L+E+P  I   T  L L++N+I  IK    F  L +L 
Sbjct: 33  QTCPSVCSCSNQFSKVICVRKNLREVPDGISTNTRLLNLHENQIQIIKV-NSFKHLRHLE 91

Query: 144 KLDLRRNQVTGIEDNAFEG 162
            L L RN +  IE  AF G
Sbjct: 92  ILQLSRNHIRTIEIGAFNG 110

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 89.0 bits (221), Expect = 5e-19
 Identities = 35/128 (27%), Positives = 53/128 (41%), Gaps = 15/128 (11%)

Query: 174 CPPKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYV-GNYPVSTMYRDLSNNQIGFLS 232
           CP  C+C+ +              V      +R    V      +T   +L  NQI  + 
Sbjct: 35  CPSVCSCSNQFS-----------KVICVRKNLRE---VPDGISTNTRLLNLHENQIQIIK 80

Query: 233 NFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITH 292
             +F  L  L  L LS N ++ I+  A  GL +L  + L  N ++ IP GAF  L  +  
Sbjct: 81  VNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKE 140

Query: 293 LAIGGNPL 300
           L +  NP+
Sbjct: 141 LWLRNNPI 148

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 84.4 bits (209), Expect = 1e-17
 Identities = 24/78 (30%), Positives = 35/78 (44%)

Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPE 281
            LS N I  +    F+ L+ L+ L L  N+L  I   A   L  L+ + L  N I  IP 
Sbjct: 94  QLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPS 153

Query: 282 GAFADLHAITHLAIGGNP 299
            AF  + ++  L +G   
Sbjct: 154 YAFNRIPSLRRLDLGELK 171

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 83.3 bits (206), Expect = 4e-17
 Identities = 28/90 (31%), Positives = 42/90 (46%), Gaps = 1/90 (1%)

Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISL-HGNDISMIP 280
           +L +N++  + N  F  LSKL +L L  N ++ I   A   + SLR + L     +S I 
Sbjct: 118 ELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYIS 177

Query: 281 EGAFADLHAITHLAIGGNPLYCDCGLAWLS 310
           EGAF  L  + +L +    L     L  L 
Sbjct: 178 EGAFEGLSNLRYLNLAMCNLREIPNLTPLI 207

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 47.8 bits (114), Expect = 6e-06
 Identities = 23/58 (39%), Positives = 32/58 (55%), Gaps = 2/58 (3%)

Query: 106 LKEIPKDIPLYT-TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEG 162
           L+EIP   PL    EL L+ N +  I   G F  L +L KL + ++Q+  IE NAF+ 
Sbjct: 197 LREIPNLTPLIKLDELDLSGNHLSAI-RPGSFQGLMHLQKLWMIQSQIQVIERNAFDN 253

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 46.7 bits (111), Expect = 2e-05
 Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 2/46 (4%)

Query: 118 TELILNDNEIGKIKSDGLFGRLPNLIKLDL-RRNQVTGIEDNAFEG 162
            EL L +N I  I     F R+P+L +LDL    +++ I + AFEG
Sbjct: 139 KELWLRNNPIESI-PSYAFNRIPSLRRLDLGELKRLSYISEGAFEG 183

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 43.6 bits (103), Expect = 1e-04
 Identities = 12/45 (26%), Positives = 20/45 (44%), Gaps = 3/45 (6%)

Query: 118 TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEG 162
             L L    + +I +      L  L +LDL  N ++ I   +F+G
Sbjct: 188 RYLNLAMCNLREIPN---LTPLIKLDELDLSGNHLSAIRPGSFQG 229

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 43.2 bits (102), Expect = 2e-04
 Identities = 10/45 (22%), Positives = 22/45 (48%), Gaps = 1/45 (2%)

Query: 118 TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEG 162
            +L +  ++I  I     F  L +L++++L  N +T +  + F  
Sbjct: 234 QKLWMIQSQIQVI-ERNAFDNLQSLVEINLAHNNLTLLPHDLFTP 277

>2ygq_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling pathway, WNT antagonist, MO cancer, glycosaminoglycan; HET: PCF NAG FUC SCR; 3.95A {Homo sapiens} Length = 324

 Score =  129 bits (326), Expect = 2e-33
 Identities = 59/211 (27%), Positives = 78/211 (36%), Gaps = 35/211 (16%)

Query: 359 NACYKSPCTNQGVCEPLPERQYQCRCTPGYHGQHCEFMIDACYGNPCRNSGTCKLLEEGR 418
            A     C N G C      +  C C  G+HG HCE     C    C N G C       
Sbjct: 148 QAECPGGCRNGGFCN----ERRICECPDGFHGPHCE--KALCT-PRCMNGGLC----VTP 196

Query: 419 FNCECAPGYTGDRCEINIDDCLSHKCENNATCVDLIQAYECRCAPGFQGEFCQTKTPFCA 478
             C C PG+ G  C+       S  C N  TC       +C C PG +GE C+     C 
Sbjct: 197 GFCICPPGFYGVNCDK---ANCSTTCFNGGTCFY---PGKCICPPGLEGEQCEISK--CP 248

Query: 479 GEYNPCRNGARCLDHFSHYTCECTPGFSGVNCTVNVDDCVNHMCQNGGTCVDGINDYTCK 538
               PCRNG +C+       C+C+ G+ G  C+  V +     C   GTC +      C+
Sbjct: 249 ---QPCRNGGKCIG---KSKCKCSKGYQGDLCSKPVCEPG---CGAHGTCHEP---NKCQ 296

Query: 539 CEGDFVGKFCEIAPFVAMMYPQTSPCQHHDC 569
           C+  + G+ C                 HH  
Sbjct: 297 CQEGWHGRHCNK----RYEASLIGTKHHHHH 323

>2ygq_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling pathway, WNT antagonist, MO cancer, glycosaminoglycan; HET: PCF NAG FUC SCR; 3.95A {Homo sapiens} Length = 324

 Score =  125 bits (315), Expect = 6e-32
 Identities = 57/237 (24%), Positives = 72/237 (30%), Gaps = 50/237 (21%)

Query: 358 CNACYKSPCTNQGVCEPLPERQYQCRCTPGYHGQHCEFMIDACYGNPCRNSGTCKLLEEG 417
                     ++G                    + C+    A     CRN G C      
Sbjct: 118 AFEVDVIVMNSEGNT-------ILKTPQNAIFFKTCQ---QAECPGGCRNGGFC----NE 163

Query: 418 RFNCECAPGYTGDRCEINIDDCLSHKCENNATCVDLIQAYECRCAPGFQGEFCQTKTPFC 477
           R  CEC  G+ G  CE       + +C N   CV       C C PGF G  C      C
Sbjct: 164 RRICECPDGFHGPHCEK---ALCTPRCMNGGLCVT---PGFCICPPGFYGVNCDKAN--C 215

Query: 478 AGEYNPCRNGARCLDHFSHYTCECTPGFSGVNCTVNVDDCVNHMCQNGGTCVDGINDYTC 537
           +     C NG  C        C C PG  G  C   +  C    C+NGG C+       C
Sbjct: 216 S---TTCFNGGTCFY---PGKCICPPGLEGEQC--EISKCPQP-CRNGGKCI---GKSKC 263

Query: 538 KCEGDFVGKFCEIAPFVAMMYPQTSPCQHHDCKNGICFQPQGSNDYLCKCAPGYSGK 594
           KC   + G  C               C  H    G C          C+C  G+ G+
Sbjct: 264 KCSKGYQGDLCSK-------PVCEPGCGAH----GTC-----HEPNKCQCQEGWHGR 304

>2ygq_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling pathway, WNT antagonist, MO cancer, glycosaminoglycan; HET: PCF NAG FUC SCR; 3.95A {Homo sapiens} Length = 324

 Score = 89.1 bits (221), Expect = 2e-19
 Identities = 40/180 (22%), Positives = 51/180 (28%), Gaps = 33/180 (18%)

Query: 416 EGRFNCECAPGYTGDRCEINIDDCLSHKCENNATCVDLIQAYECRCAPGFQGEFCQTKTP 475
            G    + +    G  C    D   + +  +                     + CQ    
Sbjct: 93  LGTVPHKASVVQVGFPCLGKQDGVAAFEV-DVIVMNSEGNTILKTPQNAIFFKTCQ--QA 149

Query: 476 FCAGEYNPCRNGARCLDHFSHYTCECTPGFSGVNCTVNVDDCVNHMCQNGGTCVDGINDY 535
            C      CRNG  C +      CEC  GF G +C   +       C NGG CV      
Sbjct: 150 EC---PGGCRNGGFCNE---RRICECPDGFHGPHCEKALCTPR---CMNGGLCV---TPG 197

Query: 536 TCKCEGDFVGKFCEIAPFVAMMYPQTSPCQHHDCKN-GICFQPQGSNDYLCKCAPGYSGK 594
            C C   F G  C+                   C N G CF         C C PG  G+
Sbjct: 198 FCICPPGFYGVNCDK------------ANCSTTCFNGGTCF-----YPGKCICPPGLEGE 240

>2ygq_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling pathway, WNT antagonist, MO cancer, glycosaminoglycan; HET: PCF NAG FUC SCR; 3.95A {Homo sapiens} Length = 324

 Score = 42.1 bits (99), Expect = 3e-04
 Identities = 15/113 (13%), Positives = 24/113 (21%), Gaps = 26/113 (23%)

Query: 482 NPCRNGARCLDHFSHYTCECTPGFSGVNCTVNVDDCVNHMCQNGGTCVDGINDYTCKCEG 541
            P                 C     GV               +        N      + 
Sbjct: 90  VPLLGTVPHKASVVQVGFPCLGKQDGVAA----------FEVDVIVMNSEGNTILKTPQN 139

Query: 542 DFVGKFCEIAPFVAMMYPQTSPCQHHDCKNGICFQPQGSNDYLCKCAPGYSGK 594
               K C+ A            C++     G C +       +C+C  G+ G 
Sbjct: 140 AIFFKTCQQA-------ECPGGCRNG----GFCNER-----RICECPDGFHGP 176

>2vh0_B Activated factor XA light chain; serine protease, EGF-like domain, blood coagulation, polymorphism, glycoprotein, hydroxylation; HET: GSI; 1.7A {Homo sapiens} PDB: 1ezq_B* 1f0s_B* 1ksn_B* 1f0r_B* 1lpk_A* 1lpz_A* 1lqd_A* 1nfw_B* 1nfx_B* 1nfy_B* 2boh_A* 2cji_B* 1lpg_A* 2j34_B* 2j38_B* 2j2u_B* 2j94_B* 2j95_B* 2uwl_B* 2j4i_B* ... Length = 134

 Score =  123 bits (310), Expect = 3e-33
 Identities = 21/126 (16%), Positives = 36/126 (28%), Gaps = 2/126 (1%)

Query: 403 NPCRNSGTCKLLEEGRFNCECAPGYTGDRCEINIDDCLSHKCENNATCVDLIQAYECRCA 462
             C         E      +            + D C +  C+N   C D +  Y C C 
Sbjct: 10  RECMEETCSYE-EAREVFEDSDKTNEFWNKYKDGDQCETSPCQNQGKCKDGLGEYTCTCL 68

Query: 463 PGFQGEFCQTKTPFCAGEYNPCRNGARCLDHFSHYTCECTPGFSGVNCTVNVDDCVNHMC 522
            GF+G+ C+  T       +       C +  +   C C  G++  +          + C
Sbjct: 69  EGFEGKNCELFTRKLC-SLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKACIPTGPYPC 127

Query: 523 QNGGTC 528
                 
Sbjct: 128 GKQTLE 133

>2vh0_B Activated factor XA light chain; serine protease, EGF-like domain, blood coagulation, polymorphism, glycoprotein, hydroxylation; HET: GSI; 1.7A {Homo sapiens} PDB: 1ezq_B* 1f0s_B* 1ksn_B* 1f0r_B* 1lpk_A* 1lpz_A* 1lqd_A* 1nfw_B* 1nfx_B* 1nfy_B* 2boh_A* 2cji_B* 1lpg_A* 2j34_B* 2j38_B* 2j2u_B* 2j94_B* 2j95_B* 2uwl_B* 2j4i_B* ... Length = 134

 Score =  107 bits (270), Expect = 8e-28
 Identities = 26/131 (19%), Positives = 40/131 (30%), Gaps = 10/131 (7%)

Query: 361 CYKSPCTNQGVCEPLPERQYQCRCTPGYHGQHCEFMIDACYGNPCRNSGTCKLLEEGRFN 420
           C +  C+ +   E                  +     D C  +PC+N G CK    G + 
Sbjct: 12  CMEETCSYEEARE------VFEDSDKTNEFWNKYKDGDQCETSPCQNQGKCKDG-LGEYT 64

Query: 421 CECAPGYTGDRCEINIDD-CLSHKCENNATCVDLIQAYECRCAPGFQGEFCQTKTPFCAG 479
           C C  G+ G  CE+     C     + +  C +   +  C CA G+              
Sbjct: 65  CTCLEGFEGKNCELFTRKLCSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKACIPTGP 124

Query: 480 EYNPCRNGARC 490
              PC      
Sbjct: 125 --YPCGKQTLE 133

>2vh0_B Activated factor XA light chain; serine protease, EGF-like domain, blood coagulation, polymorphism, glycoprotein, hydroxylation; HET: GSI; 1.7A {Homo sapiens} PDB: 1ezq_B* 1f0s_B* 1ksn_B* 1f0r_B* 1lpk_A* 1lpz_A* 1lqd_A* 1nfw_B* 1nfx_B* 1nfy_B* 2boh_A* 2cji_B* 1lpg_A* 2j34_B* 2j38_B* 2j2u_B* 2j94_B* 2j95_B* 2uwl_B* 2j4i_B* ... Length = 134

 Score =  104 bits (262), Expect = 9e-27
 Identities = 24/135 (17%), Positives = 35/135 (25%), Gaps = 12/135 (8%)

Query: 439 CLSHKCENNATCVDLIQAYECRCAPGFQGEFCQTKTPFCAGEYNPCRNGARCLDHFSHYT 498
            L  +C       +  +          +          C    +PC+N  +C D    YT
Sbjct: 7   HLERECMEETCSYEEAREVFEDSDKTNEFWNKYKDGDQCET--SPCQNQGKCKDGLGEYT 64

Query: 499 CECTPGFSGVNCTVNVDD-CVNHMCQNGGTCVDGINDYTCKCEGDFVGKFCEIAPFVAMM 557
           C C  GF G NC +     C          C +  N   C C   +              
Sbjct: 65  CTCLEGFEGKNCELFTRKLCSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGK------- 117

Query: 558 YPQTSPCQHHDCKNG 572
                P   + C   
Sbjct: 118 --ACIPTGPYPCGKQ 130

>2vh0_B Activated factor XA light chain; serine protease, EGF-like domain, blood coagulation, polymorphism, glycoprotein, hydroxylation; HET: GSI; 1.7A {Homo sapiens} PDB: 1ezq_B* 1f0s_B* 1ksn_B* 1f0r_B* 1lpk_A* 1lpz_A* 1lqd_A* 1nfw_B* 1nfx_B* 1nfy_B* 2boh_A* 2cji_B* 1lpg_A* 2j34_B* 2j38_B* 2j2u_B* 2j94_B* 2j95_B* 2uwl_B* 2j4i_B* ... Length = 134

 Score = 87.7 bits (218), Expect = 7e-21
 Identities = 25/94 (26%), Positives = 34/94 (36%), Gaps = 3/94 (3%)

Query: 358 CNACYKSPCTNQGVCEPLPERQYQCRCTPGYHGQHCEFMID-ACYGNPCRNSGTCKLLEE 416
            + C  SPC NQG C+     +Y C C  G+ G++CE      C  +       C   E+
Sbjct: 42  GDQCETSPCQNQGKCKDGL-GEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQFCH-EEQ 99

Query: 417 GRFNCECAPGYTGDRCEINIDDCLSHKCENNATC 450
               C CA GYT             + C      
Sbjct: 100 NSVVCSCARGYTLADNGKACIPTGPYPCGKQTLE 133

>2vh0_B Activated factor XA light chain; serine protease, EGF-like domain, blood coagulation, polymorphism, glycoprotein, hydroxylation; HET: GSI; 1.7A {Homo sapiens} PDB: 1ezq_B* 1f0s_B* 1ksn_B* 1f0r_B* 1lpk_A* 1lpz_A* 1lqd_A* 1nfw_B* 1nfx_B* 1nfy_B* 2boh_A* 2cji_B* 1lpg_A* 2j34_B* 2j38_B* 2j2u_B* 2j94_B* 2j95_B* 2uwl_B* 2j4i_B* ... Length = 134

 Score = 86.6 bits (215), Expect = 2e-20
 Identities = 27/114 (23%), Positives = 35/114 (30%), Gaps = 11/114 (9%)

Query: 482 NPCRNGARCLDHFSHYTCECTPGFSGVNCTVNVDDCVNHMCQNGGTCVDGINDYTCKCEG 541
             C       +       +        N   + D C    CQN G C DG+ +YTC C  
Sbjct: 10  RECMEETCSYEEAREVFEDSDKTNEFWNKYKDGDQCETSPCQNQGKCKDGLGEYTCTCLE 69

Query: 542 DFVGKFCEIAPFVAMMYPQTSPCQH-HDCKNGICFQPQGSNDYLCKCAPGYSGK 594
            F GK CE+                   C           N  +C CA GY+  
Sbjct: 70  GFEGKNCELFTRK---LCSLDNGDCDQFCHEEQ-------NSVVCSCARGYTLA 113

>2vh0_B Activated factor XA light chain; serine protease, EGF-like domain, blood coagulation, polymorphism, glycoprotein, hydroxylation; HET: GSI; 1.7A {Homo sapiens} PDB: 1ezq_B* 1f0s_B* 1ksn_B* 1f0r_B* 1lpk_A* 1lpz_A* 1lqd_A* 1nfw_B* 1nfx_B* 1nfy_B* 2boh_A* 2cji_B* 1lpg_A* 2j34_B* 2j38_B* 2j2u_B* 2j94_B* 2j95_B* 2uwl_B* 2j4i_B* ... Length = 134

 Score = 53.1 bits (128), Expect = 1e-08
 Identities = 8/52 (15%), Positives = 9/52 (17%), Gaps = 1/52 (1%)

Query: 361 CYKSPCTNQGVCEPLPERQYQCRCTPGYHGQHCEFMIDACYGNPCRNSGTCK 412
           C          C         C C  GY               PC      +
Sbjct: 84  CSLDNGDCDQFCHEEQNS-VVCSCARGYTLADNGKACIPTGPYPCGKQTLER 134

>2vh0_B Activated factor XA light chain; serine protease, EGF-like domain, blood coagulation, polymorphism, glycoprotein, hydroxylation; HET: GSI; 1.7A {Homo sapiens} PDB: 1ezq_B* 1f0s_B* 1ksn_B* 1f0r_B* 1lpk_A* 1lpz_A* 1lqd_A* 1nfw_B* 1nfx_B* 1nfy_B* 2boh_A* 2cji_B* 1lpg_A* 2j34_B* 2j38_B* 2j2u_B* 2j94_B* 2j95_B* 2uwl_B* 2j4i_B* ... Length = 134

 Score = 50.8 bits (122), Expect = 6e-08
 Identities = 21/71 (29%), Positives = 26/71 (36%), Gaps = 11/71 (15%)

Query: 1   NGGTCVDGINDYTCKCEGDFVGKFCEIAPFVAMMYPQTSPCQH-HDCKNGICFQPQGSND 59
           N G C DG+ +YTC C   F GK CE+                   C           N 
Sbjct: 52  NQGKCKDGLGEYTCTCLEGFEGKNCELFTRK---LCSLDNGDCDQFCHEEQ-------NS 101

Query: 60  YLCKCAPGYSG 70
            +C CA GY+ 
Sbjct: 102 VVCSCARGYTL 112

>2vh0_B Activated factor XA light chain; serine protease, EGF-like domain, blood coagulation, polymorphism, glycoprotein, hydroxylation; HET: GSI; 1.7A {Homo sapiens} PDB: 1ezq_B* 1f0s_B* 1ksn_B* 1f0r_B* 1lpk_A* 1lpz_A* 1lqd_A* 1nfw_B* 1nfx_B* 1nfy_B* 2boh_A* 2cji_B* 1lpg_A* 2j34_B* 2j38_B* 2j2u_B* 2j94_B* 2j95_B* 2uwl_B* 2j4i_B* ... Length = 134

 Score = 40.0 bits (94), Expect = 3e-04
 Identities = 13/72 (18%), Positives = 22/72 (30%), Gaps = 12/72 (16%)

Query: 1  NGGTCVDGINDYTCKCEGDFVGKFCEIAPFVAMMYPQTSPCQHH-DCKNGICFQPQGSND 59
                +   +     +                   +TSPCQ+   CK+G+        +
Sbjct: 14 EETCSYEEAREVFEDSDKTNEFWNKYK----DGDQCETSPCQNQGKCKDGL-------GE 62

Query: 60 YLCKCAPGYSGV 71
          Y C C  G+ G 
Sbjct: 63 YTCTCLEGFEGK 74

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  131 bits (331), Expect = 3e-32
 Identities = 49/243 (20%), Positives = 76/243 (31%), Gaps = 39/243 (16%)

Query: 118 TELILNDNEIGKI-KSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEG-EN----DQGCLGD 171
             L+L    +  +  S   F  L NL  LDL  N +  I D+  EG E     D   L  
Sbjct: 457 QRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILD---LQH 513

Query: 172 NYCPPKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFL 231
           N            L    +       +        +              +L +N    +
Sbjct: 514 NN-----------LARLWKHANPGGPIYFLKGLSHLHIL-----------NLESNGFDEI 551

Query: 232 SNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFAD-LHAI 290
               F  L +L  + L  N L  +         SL+ ++L  N I+ + +  F      +
Sbjct: 552 PVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNL 611

Query: 291 THLAIGGNPLYCDCG-LAWLSEWVKRDYVE----PGIARCTEPASMRDKLLLTAPASSFQ 345
           T L +  NP  C C  +AW   W+   +           C  P       +     SS  
Sbjct: 612 TELDMRFNPFDCTCESIAWFVNWINETHTNIPELSSHYLCNTPPHYHGFPVRLFDTSS-- 669

Query: 346 CKE 348
           CK+
Sbjct: 670 CKD 672

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 96.6 bits (241), Expect = 4e-21
 Identities = 39/185 (21%), Positives = 71/185 (38%), Gaps = 28/185 (15%)

Query: 118 TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDNYCPPK 177
           T+  ++   + KI  D  F  L  L  L++  N + GI+ N F G               
Sbjct: 308 TKQSISLASLPKI-DDFSFQWLKCLEHLNMEDNDIPGIKSNMFTG-----------LI-- 353

Query: 178 CTCTVRVLFYDG-RAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSNFTF 236
               ++ L           +  E F S       + + P+  +  +L+ N+I  + +  F
Sbjct: 354 ---NLKYLSLSNSFTSLRTLTNETFVS-------LAHSPLHIL--NLTKNKISKIESDAF 401

Query: 237 SPLSKLSQLILSYNKL-QCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAI 295
           S L  L  L L  N++ Q +      GL+++  I L  N    +   +FA + ++  L +
Sbjct: 402 SWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLML 461

Query: 296 GGNPL 300
               L
Sbjct: 462 RRVAL 466

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 91.6 bits (228), Expect = 2e-19
 Identities = 36/192 (18%), Positives = 67/192 (34%), Gaps = 32/192 (16%)

Query: 118 TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDNYCPPK 177
           T L L+ N +  +  +  F  LP L    L  N +  +  ++  G               
Sbjct: 251 TMLDLSYNNLNVV-GNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLF------------- 296

Query: 178 CTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYR----DLSNNQIGFLSN 233
               VR L         +    +  + +     + ++    +      ++ +N I  + +
Sbjct: 297 ---NVRYLNLKR----SFTKQSISLASLP---KIDDFSFQWLKCLEHLNMEDNDIPGIKS 346

Query: 234 FTFSPLSKLSQLILSYNKLQC--IDRDALAGL--KSLRIISLHGNDISMIPEGAFADLHA 289
             F+ L  L  L LS +      +  +    L    L I++L  N IS I   AF+ L  
Sbjct: 347 NMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGH 406

Query: 290 ITHLAIGGNPLY 301
           +  L +G N + 
Sbjct: 407 LEVLDLGLNEIG 418

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 87.7 bits (218), Expect = 3e-18
 Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 1/71 (1%)

Query: 92  CSCDGTRVDCSQRGLKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQ 151
           C+      DCS   L ++P D+P   T L L  N++ ++ +   F R   L  LD+  N 
Sbjct: 2   CTVSHEVADCSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAA-NFTRYSQLTSLDVGFNT 60

Query: 152 VTGIEDNAFEG 162
           ++ +E    + 
Sbjct: 61  ISKLEPELCQK 71

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 87.4 bits (217), Expect = 3e-18
 Identities = 42/196 (21%), Positives = 64/196 (32%), Gaps = 52/196 (26%)

Query: 118 TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDNYCPPK 177
            +L L+ N+I +  S G F  +  L  L L   Q+                     C   
Sbjct: 174 KKLELSSNQIKEF-SPGCFHAIGRLFGLFLNNVQLGPSLTEKL-------------CLEL 219

Query: 178 CTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSNFTFS 237
              ++R L                                     LSN+Q+   SN TF 
Sbjct: 220 ANTSIRNL------------------------------------SLSNSQLSTTSNTTFL 243

Query: 238 PL--SKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAI 295
            L  + L+ L LSYN L  +  D+ A L  L    L  N+I  +   +   L  + +L +
Sbjct: 244 GLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNL 303

Query: 296 GGNPLYCDCGLAWLSE 311
             +       LA L +
Sbjct: 304 KRSFTKQSISLASLPK 319

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 87.4 bits (217), Expect = 3e-18
 Identities = 20/86 (23%), Positives = 45/86 (52%)

Query: 215 PVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGN 274
           P +    +L++NQ+  L    F+  S+L+ L + +N +  ++ +    L  L++++L  N
Sbjct: 24  PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN 83

Query: 275 DISMIPEGAFADLHAITHLAIGGNPL 300
           ++S + +  FA    +T L +  N +
Sbjct: 84  ELSQLSDKTFAFCTNLTELHLMSNSI 109

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 87.0 bits (216), Expect = 5e-18
 Identities = 20/79 (25%), Positives = 28/79 (35%)

Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPE 281
           D+  N I  L       L  L  L L +N+L  +     A   +L  + L  N I  I  
Sbjct: 55  DVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKN 114

Query: 282 GAFADLHAITHLAIGGNPL 300
             F     +  L +  N L
Sbjct: 115 NPFVKQKNLITLDLSHNGL 133

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 86.2 bits (214), Expect = 8e-18
 Identities = 21/79 (26%), Positives = 38/79 (48%)

Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPE 281
           +L +N++  LS+ TF+  + L++L L  N +Q I  +     K+L  + L  N +S    
Sbjct: 79  NLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKL 138

Query: 282 GAFADLHAITHLAIGGNPL 300
           G    L  +  L +  N +
Sbjct: 139 GTQVQLENLQELLLSNNKI 157

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 85.4 bits (212), Expect = 1e-17
 Identities = 34/194 (17%), Positives = 65/194 (33%), Gaps = 61/194 (31%)

Query: 118 TELILNDNEIGKI--KSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDNYCP 175
             L LN+ ++G    +   L     ++  L L  +Q++   +  F      G        
Sbjct: 198 FGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTF-----LGL------- 245

Query: 176 PKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSNFT 235
                 + +L                                    DLS N +  + N +
Sbjct: 246 --KWTNLTML------------------------------------DLSYNNLNVVGNDS 267

Query: 236 FSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGN---------DISMIPEGAFAD 286
           F+ L +L    L YN +Q +   +L GL ++R ++L  +          +  I + +F  
Sbjct: 268 FAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQW 327

Query: 287 LHAITHLAIGGNPL 300
           L  + HL +  N +
Sbjct: 328 LKCLEHLNMEDNDI 341

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 81.2 bits (201), Expect = 4e-16
 Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 2/81 (2%)

Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALA--GLKSLRIISLHGNDISMI 279
           DLS+N +      T   L  L +L+LS NK+Q +  + L      SL+ + L  N I   
Sbjct: 127 DLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEF 186

Query: 280 PEGAFADLHAITHLAIGGNPL 300
             G F  +  +  L +    L
Sbjct: 187 SPGCFHAIGRLFGLFLNNVQL 207

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 80.4 bits (199), Expect = 6e-16
 Identities = 18/81 (22%), Positives = 30/81 (37%), Gaps = 2/81 (2%)

Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPE 281
            L +N I  + N  F     L  L LS+N L          L++L+ + L  N I  +  
Sbjct: 103 HLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKS 162

Query: 282 GAFADLH--AITHLAIGGNPL 300
                    ++  L +  N +
Sbjct: 163 EELDIFANSSLKKLELSSNQI 183

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 75.8 bits (187), Expect = 2e-14
 Identities = 21/82 (25%), Positives = 38/82 (46%), Gaps = 3/82 (3%)

Query: 222 DLSNNQI-GFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIP 280
           DL  N+I   L+   +  L  + ++ LSYNK   + R++ A + SL+ + L    +  + 
Sbjct: 411 DLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVD 470

Query: 281 E--GAFADLHAITHLAIGGNPL 300
                F  L  +T L +  N +
Sbjct: 471 SSPSPFQPLRNLTILDLSNNNI 492

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 75.0 bits (185), Expect = 3e-14
 Identities = 38/200 (19%), Positives = 63/200 (31%), Gaps = 52/200 (26%)

Query: 118 TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDNYCPPK 177
             L L  N+I KI+S   F  L +L  LDL          N    E              
Sbjct: 384 HILNLTKNKISKIES-DAFSWLGHLEVLDLG--------LNEIGQELTGQEWRG--LE-- 430

Query: 178 CTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYR-------DLSNNQIGF 230
               +  ++             L  ++            ++           L    +  
Sbjct: 431 ---NIFEIY-------------LSYNKYL------QLTRNSFALVPSLQRLMLRRVALKN 468

Query: 231 LSN--FTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGA----- 283
           + +    F PL  L+ L LS N +  I+ D L GL+ L I+ L  N+++ + + A     
Sbjct: 469 VDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGP 528

Query: 284 ---FADLHAITHLAIGGNPL 300
                 L  +  L +  N  
Sbjct: 529 IYFLKGLSHLHILNLESNGF 548

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 75.0 bits (185), Expect = 3e-14
 Identities = 32/196 (16%), Positives = 68/196 (34%), Gaps = 48/196 (24%)

Query: 118 TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDNYCPPK 177
             L L+ N +   K  G   +L NL +L L  N++  ++    +   +            
Sbjct: 124 ITLDLSHNGLSSTK-LGTQVQLENLQELLLSNNKIQALKSEELDIFANS----------- 171

Query: 178 CTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSN--------NQIG 229
              +++ L             EL S++I+             +  +           Q+G
Sbjct: 172 ---SLKKL-------------ELSSNQIK-------EFSPGCFHAIGRLFGLFLNNVQLG 208

Query: 230 FL---SNFTFSPLSKLSQLILSYNKLQCIDRDALAGLK--SLRIISLHGNDISMIPEGAF 284
                        + +  L LS ++L         GLK  +L ++ L  N+++++   +F
Sbjct: 209 PSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSF 268

Query: 285 ADLHAITHLAIGGNPL 300
           A L  + +  +  N +
Sbjct: 269 AWLPQLEYFFLEYNNI 284

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 60.8 bits (148), Expect = 8e-10
 Identities = 34/185 (18%), Positives = 62/185 (33%), Gaps = 46/185 (24%)

Query: 118 TELILNDNEIGKIKSDGLFG-RLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDNYCPP 176
             L L+++++    +    G +  NL  LDL  N +  + +++F              P 
Sbjct: 225 RNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAW-----------LP- 272

Query: 177 KCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLS-NFT 235
                +   F             L  + I+  +       S     L N +   L  +FT
Sbjct: 273 ----QLEYFF-------------LEYNNIQHLF-------SHSLHGLFNVRYLNLKRSFT 308

Query: 236 FSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAI 295
              +S           L  ID  +   LK L  +++  NDI  I    F  L  + +L++
Sbjct: 309 KQSIS--------LASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSL 360

Query: 296 GGNPL 300
             +  
Sbjct: 361 SNSFT 365

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 47.7 bits (114), Expect = 9e-06
 Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 1/45 (2%)

Query: 118 TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEG 162
           TEL L  N I KI  +  F +  NLI LDL  N ++  +      
Sbjct: 100 TELHLMSNSIQKI-KNNPFVKQKNLITLDLSHNGLSSTKLGTQVQ 143

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 47.3 bits (113), Expect = 1e-05
 Identities = 20/87 (22%), Positives = 35/87 (40%), Gaps = 9/87 (10%)

Query: 100 DCSQRGLKEIPKDI--PLYT-TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIE 156
           +    G  EIP ++   L+    + L  N +  +    +F    +L  L+L++N +T +E
Sbjct: 542 NLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTL-PASVFNNQVSLKSLNLQKNLITSVE 600

Query: 157 DNAFEGENDQGC---LGDNYCPPKCTC 180
              F           +  N  P  CTC
Sbjct: 601 KKVFGPAFRNLTELDMRFN--PFDCTC 625

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 45.8 bits (109), Expect = 4e-05
 Identities = 13/57 (22%), Positives = 21/57 (36%), Gaps = 3/57 (5%)

Query: 242 LSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIGGN 298
                 S+ KL  +  D    +  L   +L  N +  +P   F     +T L +G N
Sbjct: 6   HEVADCSHLKLTQVPDDLPTNITVL---NLTHNQLRRLPAANFTRYSQLTSLDVGFN 59

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score =  126 bits (318), Expect = 4e-32
 Identities = 46/334 (13%), Positives = 87/334 (26%), Gaps = 103/334 (30%)

Query: 86  AACPSGCSCD-GTRVDCSQRGLKEIPKDIPLYTTELILNDNEIGKIKSD----------- 133
           ++  +  SCD       S   L  IP  +      L L++N I  I +            
Sbjct: 22  SSNQASLSCDRNGICKGSSGSLNSIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQAL 81

Query: 134 ------------GLFGRLPNLIKLDLRRNQVTGIEDNAFEG----------ENDQGCLGD 171
                         F  L +L  LDL  N ++ +  + F+            N    LG+
Sbjct: 82  VLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGE 141

Query: 172 NYCPPKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFL 231
                  T  +++L          I  + F+                   ++  + +   
Sbjct: 142 TSLFSHLT-KLQILRVGNMDTFTKIQRKDFAG-----------LTFLEELEIDASDLQSY 189

Query: 232 SNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIP----------- 280
              +   +  +S LIL   +   +    +    S+  + L   D+               
Sbjct: 190 EPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNS 249

Query: 281 --------------------EGAFADLHAITHL------------------------AIG 296
                                     +  +  L                         + 
Sbjct: 250 LIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLH 309

Query: 297 GNPLYCDC-GLAWLSEWVKR-DYVEPGIARCTEP 328
            NP  C C  + +LS W+ +    E G A+C+  
Sbjct: 310 TNPWDCSCPRIDYLSRWLNKNSQKEQGSAKCSGS 343

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score =  118 bits (299), Expect = 4e-31
 Identities = 42/127 (33%), Positives = 69/127 (54%)

Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPE 281
           +L  NQ+  +    F   S + +L L  NK++ I      GL  L+ ++L+ N IS +  
Sbjct: 60  ELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMP 119

Query: 282 GAFADLHAITHLAIGGNPLYCDCGLAWLSEWVKRDYVEPGIARCTEPASMRDKLLLTAPA 341
           G+F  L+++T L +  NP  C+C LAW +EW+++  +  G ARC  P+ +RD  +   P 
Sbjct: 120 GSFEHLNSLTSLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAPSKVRDVQIKDLPH 179

Query: 342 SSFQCKE 348
           S F+C  
Sbjct: 180 SEFKCSS 186

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score =  102 bits (256), Expect = 3e-25
 Identities = 56/75 (74%), Positives = 69/75 (92%)

Query: 88  CPSGCSCDGTRVDCSQRGLKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDL 147
           CP+ C C+GT VDC+ RGLKEIP+DIPL+TTEL+LNDNE+G+I SDGLFGRLP+L+KL+L
Sbjct: 2   CPAMCHCEGTTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLEL 61

Query: 148 RRNQVTGIEDNAFEG 162
           +RNQ+TGIE NAFEG
Sbjct: 62  KRNQLTGIEPNAFEG 76

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  125 bits (317), Expect = 8e-31
 Identities = 48/216 (22%), Positives = 86/216 (39%), Gaps = 41/216 (18%)

Query: 118 TELILNDNEIGKI-KSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDNYCPP 176
             L+L+ N +  + K+  +   L NL  LD+ RN    + D+    E             
Sbjct: 364 QTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEK------------ 411

Query: 177 KCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSNFTF 236
                +R L          I   + +            P +    D+SNN +   S F  
Sbjct: 412 -----MRFL----NLSSTGIR-VVKT----------CIPQTLEVLDVSNNNLDSFSLF-- 449

Query: 237 SPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIG 296
             L +L +L +S NKL+ +   +L     L ++ +  N +  +P+G F  L ++  + + 
Sbjct: 450 --LPRLQELYISRNKLKTLPDASL--FPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLH 505

Query: 297 GNPLYCDCG-LAWLSEWVKRD-YVEPGIARCTEPAS 330
            NP  C C  + +LS W+ ++   E G A+C+    
Sbjct: 506 TNPWDCSCPRIDYLSRWLNKNSQKEQGSAKCSGSGK 541

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  106 bits (267), Expect = 2e-24
 Identities = 33/240 (13%), Positives = 65/240 (27%), Gaps = 50/240 (20%)

Query: 87  ACPSGCSCDGTRVDCSQRGLKEIPKDIPLYTTELILNDNEIGKIKS-------------- 132
           +C +   CD        R    IP  +      L L+ N+I  I                
Sbjct: 3   SCDASGVCD-----GRSRSFTSIPSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLIL 57

Query: 133 ---------DGLFGRLPNLIKLDLRRNQVTGIEDNAFEG----------ENDQGCLGDNY 173
                       F  L +L  LDL  N ++ +  + F             N    LG   
Sbjct: 58  KSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTS 117

Query: 174 CPPKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSN 233
             P  T  ++ L          I    F+    ++             ++    +    +
Sbjct: 118 LFPNLT-NLQTLRIGNVETFSEIRRIDFAGLTSLNE-----------LEIKALSLRNYQS 165

Query: 234 FTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHL 293
            +   +  +  L L  ++   +       L S+R + L   +++             + +
Sbjct: 166 QSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPM 225

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 90.6 bits (225), Expect = 2e-19
 Identities = 24/86 (27%), Positives = 41/86 (47%)

Query: 215 PVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGN 274
             +    DLS N+I ++ +      + L  LIL  +++  I+ DA   L SL  + L  N
Sbjct: 25  TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDN 84

Query: 275 DISMIPEGAFADLHAITHLAIGGNPL 300
            +S +    F  L ++ +L + GNP 
Sbjct: 85  HLSSLSSSWFGPLSSLKYLNLMGNPY 110

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 87.5 bits (217), Expect = 2e-18
 Identities = 21/198 (10%), Positives = 59/198 (29%), Gaps = 14/198 (7%)

Query: 106 LKEIPKDI--PLYT-TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEG 162
           L+         +     L L+ +E   +  +     L ++  L+LR   +   + +    
Sbjct: 160 LRNYQSQSLKSIRDIHHLTLHLSESAFL-LEIFADILSSVRYLELRDTNLARFQFSPLPV 218

Query: 163 ENDQGCLGDNYCPPKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRD 222
           +     +               +  D    E    +        V +            D
Sbjct: 219 DEVSSPMKKLAFRG-------SVLTDESFNELLKLLRYILELSEVEFDDCTL---NGLGD 268

Query: 223 LSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEG 282
            + ++   +S         + +L +    L        + L+ ++ I++  + + ++P  
Sbjct: 269 FNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCS 328

Query: 283 AFADLHAITHLAIGGNPL 300
               L ++  L +  N +
Sbjct: 329 FSQHLKSLEFLDLSENLM 346

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 80.2 bits (198), Expect = 6e-16
 Identities = 26/195 (13%), Positives = 57/195 (29%), Gaps = 46/195 (23%)

Query: 115 LYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGC------ 168
           +    L +    +       ++  L  + ++ +  ++V  +  +       Q        
Sbjct: 286 VTIRRLHIPQFYLFYD-LSTVYSLLEKVKRITVENSKVFLVPCSFS-----QHLKSLEFL 339

Query: 169 -LGDNYCPPKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQ 227
            L +N                           +    ++ S   G +P S     LS N 
Sbjct: 340 DLSEN--------------------------LMVEEYLKNSACKGAWP-SLQTLVLSQNH 372

Query: 228 IGFLSN--FTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFA 285
           +  +         L  L+ L +S N    +  D+    + +R ++L    I ++      
Sbjct: 373 LRSMQKTGEILLTLKNLTSLDISRNTFHPMP-DSCQWPEKMRFLNLSSTGIRVVKTCIPQ 431

Query: 286 DLHAITHLAIGGNPL 300
            L     L +  N L
Sbjct: 432 TL---EVLDVSNNNL 443

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 77.8 bits (192), Expect = 3e-15
 Identities = 12/80 (15%), Positives = 34/80 (42%), Gaps = 1/80 (1%)

Query: 222 DLS-NNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIP 280
            +        +    F+ L+ L++L +    L+     +L  ++ +  ++LH ++ + + 
Sbjct: 129 RIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLL 188

Query: 281 EGAFADLHAITHLAIGGNPL 300
           E     L ++ +L +    L
Sbjct: 189 EIFADILSSVRYLELRDTNL 208

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 77.1 bits (190), Expect = 6e-15
 Identities = 21/80 (26%), Positives = 32/80 (40%), Gaps = 1/80 (1%)

Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPE 281
            L +++I  +    F  L  L  L LS N L  +       L SL+ ++L GN    +  
Sbjct: 56  ILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGV 115

Query: 282 -GAFADLHAITHLAIGGNPL 300
              F +L  +  L IG    
Sbjct: 116 TSLFPNLTNLQTLRIGNVET 135

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 74.4 bits (183), Expect = 4e-14
 Identities = 17/83 (20%), Positives = 27/83 (32%), Gaps = 2/83 (2%)

Query: 222 DLSNNQIGFLSNF-TFSPLSKLSQLILS-YNKLQCIDRDALAGLKSLRIISLHGNDISMI 279
           +L  N    L     F  L+ L  L +        I R   AGL SL  + +    +   
Sbjct: 104 NLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNY 163

Query: 280 PEGAFADLHAITHLAIGGNPLYC 302
              +   +  I HL +  +    
Sbjct: 164 QSQSLKSIRDIHHLTLHLSESAF 186

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 62.4 bits (152), Expect = 2e-10
 Identities = 20/213 (9%), Positives = 64/213 (30%), Gaps = 18/213 (8%)

Query: 106 LKEIPKDIPLYT----TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFE 161
            + +              L + + E         F  L +L +L+++   +   +  + +
Sbjct: 110 YQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLK 169

Query: 162 G----------ENDQGCLGDNYCPPKCTCTVRVLFYDGRAGECY--IAVELFSSRIRVSY 209
                       ++   L + +     +     L     A   +  + V+  SS ++   
Sbjct: 170 SIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLA 229

Query: 210 YVGNYPVSTMYRDLSN--NQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLR 267
           + G+      + +L      I  LS   F   +       + ++   +         ++R
Sbjct: 230 FRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIR 289

Query: 268 IISLHGNDISMIPEGAFADLHAITHLAIGGNPL 300
            + +    +       ++ L  +  + +  + +
Sbjct: 290 RLHIPQFYLFYDLSTVYSLLEKVKRITVENSKV 322

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 55.5 bits (134), Expect = 3e-08
 Identities = 16/92 (17%), Positives = 32/92 (34%), Gaps = 1/92 (1%)

Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPE 281
            L  ++  FL       LS +  L L    L       L   +    +       S++ +
Sbjct: 178 TLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTD 237

Query: 282 GAFADLHAITHLAIGGNPLYC-DCGLAWLSEW 312
            +F +L  +    +  + +   DC L  L ++
Sbjct: 238 ESFNELLKLLRYILELSEVEFDDCTLNGLGDF 269

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 49.3 bits (118), Expect = 3e-06
 Identities = 21/93 (22%), Positives = 34/93 (36%), Gaps = 20/93 (21%)

Query: 97  TRVDCSQRGLKEIPKDIP-LYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGI 155
             +D S   L      +P L   EL ++ N++  +    L    P L+ + + RNQ+  +
Sbjct: 434 EVLDVSNNNLDSFSLFLPRL--QELYISRNKLKTLPDASL---FPVLLVMKISRNQLKSV 488

Query: 156 EDNAFEGENDQGC-------LGDNYCPPKCTCT 181
            D  F               L  N  P  C+C 
Sbjct: 489 PDGIF-----DRLTSLQKIWLHTN--PWDCSCP 514

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 47.8 bits (114), Expect = 7e-06
 Identities = 13/64 (20%), Positives = 28/64 (43%), Gaps = 5/64 (7%)

Query: 97  TRVDCSQRGLKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIE 156
             ++ S  G++ +   IP     L +++N +           LP L +L + RN++  + 
Sbjct: 413 RFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDSFSLF-----LPRLQELYISRNKLKTLP 467

Query: 157 DNAF 160
           D + 
Sbjct: 468 DASL 471

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  124 bits (312), Expect = 1e-30
 Identities = 36/124 (29%), Positives = 62/124 (50%), Gaps = 2/124 (1%)

Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPE 281
           +LS N +G + +  F  L KL  L LSYN ++ +   +  GL +L+ ++L  N +  +P+
Sbjct: 329 NLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPD 388

Query: 282 GAFADLHAITHLAIGGNPLYCDC-GLAWLSEWV-KRDYVEPGIARCTEPASMRDKLLLTA 339
           G F  L ++  + +  NP  C C  + +LS W+ K    E G A+C+        ++   
Sbjct: 389 GIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQGSAKCSGSGKPVRSIICPT 448

Query: 340 PASS 343
            AS 
Sbjct: 449 SASL 452

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  110 bits (278), Expect = 3e-26
 Identities = 41/226 (18%), Positives = 69/226 (30%), Gaps = 56/226 (24%)

Query: 88  CPSGCSCDGTRVDCSQRGLKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDL 147
             S CS  G    C  RGL ++P ++P +                            +DL
Sbjct: 4   GTSECSVIGYNAICINRGLHQVP-ELPAHVN-------------------------YVDL 37

Query: 148 RRNQVTGIEDNAFEGENDQGCLGDNYCPPKCTCTVRVLFYDGRAGECYIAVELFSSRIRV 207
             N +  + + +F    D                ++ L  + +     I    F     +
Sbjct: 38  SLNSIAELNETSFSRLQD----------------LQFLKVEQQTPGLVIRNNTFRGLSSL 81

Query: 208 SYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQ--CIDRDALAGLKS 265
                          L  NQ   L    F+ L+ L  L L+   L    +  +    L S
Sbjct: 82  IIL-----------KLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTS 130

Query: 266 LRIISLHGNDISMI-PEGAFADLHAITHLAIGGNPLYCDCGLAWLS 310
           L ++ L  N+I  I P   F ++     L +  N +   C    L+
Sbjct: 131 LEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLN 176

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 92.9 bits (231), Expect = 3e-20
 Identities = 37/204 (18%), Positives = 61/204 (29%), Gaps = 21/204 (10%)

Query: 118 TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEG-------ENDQGCLG 170
             L+L DN I KI+    F  +     LDL  N+V  I +                  + 
Sbjct: 132 EMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSIT 191

Query: 171 DNYCPPKCTCTVRVLFYDGRAGECY----------IAVELFSSRIRVS--YYVGNYPVST 218
                       +                         + F   I  +    +       
Sbjct: 192 LQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYN 251

Query: 219 MYRDLSNNQIGFLSNFTFSPL--SKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDI 276
           M     +       NFTF  L  S +    LS +K+  + +   +    L  ++L  N+I
Sbjct: 252 MGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEI 311

Query: 277 SMIPEGAFADLHAITHLAIGGNPL 300
           + I + AF  L  +  L +  N L
Sbjct: 312 NKIDDNAFWGLTHLLKLNLSQNFL 335

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 65.2 bits (159), Expect = 3e-11
 Identities = 18/86 (20%), Positives = 31/86 (36%), Gaps = 5/86 (5%)

Query: 222 DLSNNQI--GFLSNFTFSPLSKLSQLILSYNKLQCID-RDALAGLKSLRIISLHGNDISM 278
            L+   +    LS   F PL+ L  L+L  N ++ I        ++   ++ L  N +  
Sbjct: 109 TLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKS 168

Query: 279 IPEGAFADLHAI--THLAIGGNPLYC 302
           I E    +      T L +    L  
Sbjct: 169 ICEEDLLNFQGKHFTLLRLSSITLQD 194

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 63.6 bits (155), Expect = 6e-11
 Identities = 33/210 (15%), Positives = 58/210 (27%), Gaps = 31/210 (14%)

Query: 118 TELILNDNEIGKIK-SDGLFGRLPNLIKLDLRRNQVTGIE-DNAFEGENDQGC--LGDNY 173
             L L    +     S   F  L +L  L LR N +  I+  + F          L  N 
Sbjct: 106 EVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFN- 164

Query: 174 CPPKCTCTVRVLFYDGRAGE------CYIAVELFSSRIRVSYYVGNY--PVSTMYRDLSN 225
              K  C       + +           I ++  +         GN     S    DLS 
Sbjct: 165 -KVKSIC--EEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSG 221

Query: 226 NQIGFLSNFTFSPLSKLSQLI-------------LSYNKLQCIDRDALAGLK--SLRIIS 270
           N         F      +++                +   +  D     GL+   ++   
Sbjct: 222 NGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCD 281

Query: 271 LHGNDISMIPEGAFADLHAITHLAIGGNPL 300
           L  + I  + +  F+    +  L +  N +
Sbjct: 282 LSKSKIFALLKSVFSHFTDLEQLTLAQNEI 311

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 63.2 bits (154), Expect = 1e-10
 Identities = 23/84 (27%), Positives = 36/84 (42%), Gaps = 10/84 (11%)

Query: 88  CPSGCSCDG------TRVDCSQRGLKEIPKDIPLY---TTELILNDNEIGKIKSDGLFGR 138
            P   +  G         D S+  +  + K +  +     +L L  NEI KI  D  F  
Sbjct: 263 DPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKI-DDNAFWG 321

Query: 139 LPNLIKLDLRRNQVTGIEDNAFEG 162
           L +L+KL+L +N +  I+   FE 
Sbjct: 322 LTHLLKLNLSQNFLGSIDSRMFEN 345

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 59.0 bits (143), Expect = 2e-09
 Identities = 16/94 (17%), Positives = 33/94 (35%), Gaps = 11/94 (11%)

Query: 222 DLSNNQIGFLSNFT-FSPLSKLSQLILSYNKLQCIDRDALAGLKSLR----------IIS 270
            L +N I  +   + F  + +   L L++NK++ I  + L   +             +  
Sbjct: 135 VLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQD 194

Query: 271 LHGNDISMIPEGAFADLHAITHLAIGGNPLYCDC 304
           ++   +     G      +IT L + GN      
Sbjct: 195 MNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESM 228

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 45.9 bits (109), Expect = 3e-05
 Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 1/45 (2%)

Query: 118 TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEG 162
             L L+ N I  +  D  F  LPNL +L L  NQ+  + D  F+ 
Sbjct: 350 EVLDLSYNHIRAL-GDQSFLGLPNLKELALDTNQLKSVPDGIFDR 393

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score =  118 bits (297), Expect = 9e-30
 Identities = 41/251 (16%), Positives = 76/251 (30%), Gaps = 55/251 (21%)

Query: 87  ACPSGCSCDGTRVDCSQRGLKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKLD 146
            C          V+C +R L  +P D+P  TT                          L 
Sbjct: 3   ICEVSKVASHLEVNCDKRNLTALPPDLPKDTT-------------------------ILH 37

Query: 147 LRRNQVTGIEDNAFEGENDQGCLGDNYCPPKCTCTVRVLFYDGRAGECYIAVELFSSRIR 206
           L  N +                L  +        T   +            ++L  ++++
Sbjct: 38  LSENLLYTFSLATLMPYTRLTQLNLDRAE----LTKLQVDGTLPVLG---TLDLSHNQLQ 90

Query: 207 VSYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSL 266
               +G    +    D+S N++  L       L +L +L L  N+L+ +    L     L
Sbjct: 91  SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKL 150

Query: 267 RIISLHGNDISMIPEGAFA-----------------------DLHAITHLAIGGNPLYCD 303
             +SL  N+++ +P G                            H +    + GNP  C+
Sbjct: 151 EKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLCN 210

Query: 304 CGLAWLSEWVK 314
           C + +   W++
Sbjct: 211 CEILYFRRWLQ 221

>1x7a_L Coagulation factor IX, light chain; inhibition, blood clotting,hydrolase; HET: 187; 2.90A {Sus scrofa} SCOP: g.3.11.1 g.3.11.1 PDB: 1pfx_L* Length = 146

 Score =  113 bits (284), Expect = 1e-29
 Identities = 26/131 (19%), Positives = 38/131 (29%), Gaps = 8/131 (6%)

Query: 400 CYGNPCRNSGTCKLLEEGRFNCECAPGYTGDRCEINIDDCLSHKCENNATCVDLIQAYEC 459
           C    C      ++ E               +  ++ D C  + C N   C D I +YEC
Sbjct: 18  CIEEKCSFEEAREVFEN------TEKTNEFWKQYVDGDQCEPNPCLNGGLCKDDINSYEC 71

Query: 460 RCAPGFQGEFCQTKTPFCAGEYNPCRNGARCLDHFSHYTCECTPGFSGVNCTVNVDDCVN 519
            C  GF+G+ C+          N            S   C CT G+       +    V 
Sbjct: 72  WCQVGFEGKNCELDATCNIK--NGRCKQFCKTGADSKVLCSCTTGYRLAPDQKSCKPAVP 129

Query: 520 HMCQNGGTCVD 530
             C        
Sbjct: 130 FPCGRVSVSHS 140

>1x7a_L Coagulation factor IX, light chain; inhibition, blood clotting,hydrolase; HET: 187; 2.90A {Sus scrofa} SCOP: g.3.11.1 g.3.11.1 PDB: 1pfx_L* Length = 146

 Score =  102 bits (257), Expect = 6e-26
 Identities = 24/137 (17%), Positives = 37/137 (27%), Gaps = 9/137 (6%)

Query: 361 CYKSPCTNQGVCEPLPERQYQCRCTPGYHGQHCEFMIDACYGNPCRNSGTCKLLEEGRFN 420
           C +  C+ +   E                        D C  NPC N G CK      + 
Sbjct: 18  CIEEKCSFEEARE------VFENTEKTNEFWKQYVDGDQCEPNPCLNGGLCKDDI-NSYE 70

Query: 421 CECAPGYTGDRCEINIDDCLSHKCENNATCVDLIQAYECRCAPGFQGEFCQTKTPFCAGE 480
           C C  G+ G  CE++    + +                C C  G++    Q         
Sbjct: 71  CWCQVGFEGKNCELDATCNIKNGRCKQFCKTGADSKVLCSCTTGYRLAPDQKSCKPAVP- 129

Query: 481 YNPCRNGARCLDHFSHY 497
             PC   +      +  
Sbjct: 130 -FPCGRVSVSHSPTTLT 145

>1x7a_L Coagulation factor IX, light chain; inhibition, blood clotting,hydrolase; HET: 187; 2.90A {Sus scrofa} SCOP: g.3.11.1 g.3.11.1 PDB: 1pfx_L* Length = 146

 Score = 89.7 bits (223), Expect = 2e-21
 Identities = 21/95 (22%), Positives = 35/95 (36%), Gaps = 2/95 (2%)

Query: 358 CNACYKSPCTNQGVCEPLPERQYQCRCTPGYHGQHCEFMIDACYGNPCRNSGTCKLLEEG 417
            + C  +PC N G+C+      Y+C C  G+ G++CE        N       CK   + 
Sbjct: 48  GDQCEPNPCLNGGLCKDDI-NSYECWCQVGFEGKNCELDATCNIKNGRCK-QFCKTGADS 105

Query: 418 RFNCECAPGYTGDRCEINIDDCLSHKCENNATCVD 452
           +  C C  GY     + +    +   C   +    
Sbjct: 106 KVLCSCTTGYRLAPDQKSCKPAVPFPCGRVSVSHS 140

>1x7a_L Coagulation factor IX, light chain; inhibition, blood clotting,hydrolase; HET: 187; 2.90A {Sus scrofa} SCOP: g.3.11.1 g.3.11.1 PDB: 1pfx_L* Length = 146

 Score = 88.6 bits (220), Expect = 5e-21
 Identities = 22/131 (16%), Positives = 35/131 (26%), Gaps = 17/131 (12%)

Query: 450 CVDLIQAYECRC------APGFQGEFCQTKTPFCAGEYNPCRNGARCLDHFSHYTCECTP 503
           C++   ++E             +          C    NPC NG  C D  + Y C C  
Sbjct: 18  CIEEKCSFEEAREVFENTEKTNEFWKQYVDGDQCEP--NPCLNGGLCKDDINSYECWCQV 75

Query: 504 GFSGVNCTVNVDDCVNHMCQNGGTCVDGINDYTCKCEGDFVGKFCEIAPFVAMMYPQTSP 563
           GF G NC ++    + +            +   C C   +     +             P
Sbjct: 76  GFEGKNCELDATCNIKNGRCKQFCKTGADSKVLCSCTTGYRLAPDQK---------SCKP 126

Query: 564 CQHHDCKNGIC 574
                C     
Sbjct: 127 AVPFPCGRVSV 137

>1x7a_L Coagulation factor IX, light chain; inhibition, blood clotting,hydrolase; HET: 187; 2.90A {Sus scrofa} SCOP: g.3.11.1 g.3.11.1 PDB: 1pfx_L* Length = 146

 Score = 72.4 bits (178), Expect = 3e-15
 Identities = 25/97 (25%), Positives = 32/97 (32%), Gaps = 10/97 (10%)

Query: 499 CECTPGFSGVNCTVNVDDCVNHMCQNGGTCVDGINDYTCKCEGDFVGKFCEIAPFVAMMY 558
                        V+ D C  + C NGG C D IN Y C C+  F GK CE+        
Sbjct: 33  ENTEKTNEFWKQYVDGDQCEPNPCLNGGLCKDDINSYECWCQVGFEGKNCELD------- 85

Query: 559 PQTSPCQHHDCKNGICFQPQGSNDYLCKCAPGYSGKE 595
              +    +      C      +  LC C  GY    
Sbjct: 86  --ATCNIKNGRCKQFCKTGAD-SKVLCSCTTGYRLAP 119

>1x7a_L Coagulation factor IX, light chain; inhibition, blood clotting,hydrolase; HET: 187; 2.90A {Sus scrofa} SCOP: g.3.11.1 g.3.11.1 PDB: 1pfx_L* Length = 146

 Score = 52.0 bits (125), Expect = 3e-08
 Identities = 21/72 (29%), Positives = 26/72 (36%), Gaps = 10/72 (13%)

Query: 1   NGGTCVDGINDYTCKCEGDFVGKFCEIAPFVAMMYPQTSPCQHHDCKNGICFQPQGSNDY 60
           NGG C D IN Y C C+  F GK CE+           +    +      C      +  
Sbjct: 58  NGGLCKDDINSYECWCQVGFEGKNCELD---------ATCNIKNGRCKQFCKTGAD-SKV 107

Query: 61  LCKCAPGYSGVE 72
           LC C  GY    
Sbjct: 108 LCSCTTGYRLAP 119

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  121 bits (305), Expect = 7e-29
 Identities = 46/262 (17%), Positives = 75/262 (28%), Gaps = 60/262 (22%)

Query: 93  SCDGTRVDCSQRGLKEIPKDIPLYT----TELILNDNEIGKIKSDGLFGRLPNLIKLDLR 148
           +     +  S+  L+ +     L        LILN N       D      P+L +L L 
Sbjct: 400 NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLG 459

Query: 149 RNQVTGIEDNAFEGENDQGCLGDNYCPPKCTCTVRVLFYDGRAGECYIAVELFSSRIRVS 208
            N +    +     +             +    ++VL                       
Sbjct: 460 ENMLQLAWETELCWDV-----------FEGLSHLQVL----------------------- 485

Query: 209 YYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRI 268
                         L++N +  L    FS L+ L  L L+ N+L  +  + L    +L I
Sbjct: 486 -------------YLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDL--PANLEI 530

Query: 269 ISLHGNDISMIPEGAFADLHAITHLAIGGNPLYCDCGLAWLSEWVKRDYVE----PGIAR 324
           + +  N +       F  L     L I  N   C+C L+    W+    V     P    
Sbjct: 531 LDISRNQLLAPNPDVFVSLS---VLDITHNKFICECELSTFINWLNHTNVTIAGPPADIY 587

Query: 325 CTEPASMRDKLLLTAPASSFQC 346
           C  P S     L +        
Sbjct: 588 CVYPDSFSGVSLFSLSTEGCDE 609

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  104 bits (262), Expect = 1e-23
 Identities = 47/249 (18%), Positives = 79/249 (31%), Gaps = 68/249 (27%)

Query: 92  CSCDGTRVDCSQRGLKEIPKDIPLYTTELILNDNEIGKIKSD------------------ 133
           CS DG         L ++P+ +   T  L+L+ N I  + +                   
Sbjct: 2   CSFDGRIAFYRFCNLTQVPQVLN-TTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYT 60

Query: 134 ------GLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDNYCPPKCTCTVRVLFY 187
                   F  LPNL  LDL  +++  +  +AF+G                   +  L  
Sbjct: 61  PLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQG----------------LFHLFELR- 103

Query: 188 DGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYR----DLSNNQIGFLS-NFTFSPLSKL 242
                       L+   +     + +     +      DLS NQI  L  + +F  L+ L
Sbjct: 104 ------------LYFCGLS-DAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSL 150

Query: 243 SQLILSYNKLQCIDRDALAGL--KSLRIISLHGNDISMIPEGAFADLH------AITHLA 294
             +  S N++  +    L  L  K+L   SL  N +       +           +  L 
Sbjct: 151 KSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILD 210

Query: 295 IGGNPLYCD 303
           + GN    D
Sbjct: 211 VSGNGWTVD 219

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  101 bits (252), Expect = 2e-22
 Identities = 44/202 (21%), Positives = 74/202 (36%), Gaps = 20/202 (9%)

Query: 118 TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEG------------END 165
           T L L+ N+I  +     FG+L +L  +D   NQ+  + ++  E              N 
Sbjct: 126 TRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANS 185

Query: 166 QGCLGDNYCPPKCTCTVRVL----FYDGRAGECYIAVELFSSRIRVS-YYVGNYPVSTMY 220
                 +    KC    R +          G        FS+ I  S  +        M 
Sbjct: 186 LYSR-VSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMG 244

Query: 221 RDLSNNQIGFLSNFTFSPLSKLS--QLILSYNKLQCIDRDALAGLKSLRIISLHGNDISM 278
                + I      TF+ L++ S   L LS+  +  ++      LK L++++L  N I+ 
Sbjct: 245 AGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINK 304

Query: 279 IPEGAFADLHAITHLAIGGNPL 300
           I + AF  L  +  L +  N L
Sbjct: 305 IADEAFYGLDNLQVLNLSYNLL 326

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 97.2 bits (242), Expect = 3e-21
 Identities = 37/214 (17%), Positives = 66/214 (30%), Gaps = 25/214 (11%)

Query: 118 TELILNDNEIGKIKSDGLFG-----RLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDN 172
           +   L  N +    S          R   L  LD+  N  T      F            
Sbjct: 177 SFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNF----SNAISKSQ 232

Query: 173 YCPPKCTCTVRVLFYDGRAGECYIAVELFSS-------RIRVSY----YVGNYPVSTMYR 221
                    +    +     +       F+         + +S+     + +    T+  
Sbjct: 233 AFSLILAHHIMGAGFGFHNIK-DPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKD 291

Query: 222 ----DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDIS 277
               +L+ N+I  +++  F  L  L  L LSYN L  +      GL  +  I L  N I+
Sbjct: 292 LKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIA 351

Query: 278 MIPEGAFADLHAITHLAIGGNPLYCDCGLAWLSE 311
           +I +  F  L  +  L +  N L     +  + +
Sbjct: 352 IIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPD 385

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 92.9 bits (231), Expect = 7e-20
 Identities = 34/201 (16%), Positives = 68/201 (33%), Gaps = 17/201 (8%)

Query: 118 TELILNDNEIGKIKSDGLFG-RLPNLIKLDLRRNQVTGIEDNAFEGENDQGC-------- 168
             +  + N+I  +    L   +   L    L  N +       +    +           
Sbjct: 151 KSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILD 210

Query: 169 LGDNYCPPKCTCTVRVLFYDGRAGECYIAVELFS--------SRIRVSYYVGNYPVSTMY 220
           +  N      T          +A    +A  +               + + G    S  +
Sbjct: 211 VSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRH 270

Query: 221 RDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIP 280
            DLS+  +  L++  F  L  L  L L+YNK+  I  +A  GL +L++++L  N +  + 
Sbjct: 271 LDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELY 330

Query: 281 EGAFADLHAITHLAIGGNPLY 301
              F  L  + ++ +  N + 
Sbjct: 331 SSNFYGLPKVAYIDLQKNHIA 351

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 77.5 bits (191), Expect = 5e-15
 Identities = 22/94 (23%), Positives = 37/94 (39%), Gaps = 5/94 (5%)

Query: 222 DLSNNQI--GFLSNFTFSPLSKLSQLILSYNKLQCID-RDALAGLKSLRIISLHGNDISM 278
            L    +    L +  F  L  L++L LS N+++ +    +   L SL+ I    N I +
Sbjct: 103 RLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFL 162

Query: 279 IPEGAFADLHAIT--HLAIGGNPLYCDCGLAWLS 310
           + E     L   T    ++  N LY    + W  
Sbjct: 163 VCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGK 196

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 76.8 bits (189), Expect = 9e-15
 Identities = 35/196 (17%), Positives = 67/196 (34%), Gaps = 33/196 (16%)

Query: 118 TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGD------ 171
             L L+ N +G++     F  LP +  +DL++N +  I+D  F+       L        
Sbjct: 317 QVLNLSYNLLGEL-YSSNFYGLPKVAYIDLQKNHIAIIQDQTFKF------LEKLQTLDL 369

Query: 172 NYCPPKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFL 231
                     +  +            + L  +++     +    ++     LS N++  L
Sbjct: 370 RDNALTTIHFIPSIPD----------IFLSGNKLV---TLPKINLTANLIHLSENRLENL 416

Query: 232 SNFTF-SPLSKLSQLILSYNKLQCIDRDAL-AGLKSLRIISLHGNDI-----SMIPEGAF 284
               F   +  L  LIL+ N+      D   +   SL  + L  N +     + +    F
Sbjct: 417 DILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVF 476

Query: 285 ADLHAITHLAIGGNPL 300
             L  +  L +  N L
Sbjct: 477 EGLSHLQVLYLNHNYL 492

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 73.3 bits (180), Expect = 1e-13
 Identities = 33/203 (16%), Positives = 65/203 (32%), Gaps = 20/203 (9%)

Query: 118 TELILNDNEIGKIK-SDGLFGRLPNLIKLDLRRNQVTGIEDN-AFEG----------END 165
            EL L    +      DG F  L  L +LDL +NQ+  +  + +F             N 
Sbjct: 100 FELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQ 159

Query: 166 QGCLGDNYCPPKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSY------YVGNYPVSTM 219
              + ++   P    T+        +    ++V+                 V     +  
Sbjct: 160 IFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVD 219

Query: 220 YRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLK--SLRIISLHGNDIS 277
                +N I     F+      +      ++ ++  D++  AGL   S+R + L    + 
Sbjct: 220 ITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVF 279

Query: 278 MIPEGAFADLHAITHLAIGGNPL 300
            +    F  L  +  L +  N +
Sbjct: 280 SLNSRVFETLKDLKVLNLAYNKI 302

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 71.8 bits (176), Expect = 4e-13
 Identities = 39/195 (20%), Positives = 75/195 (38%), Gaps = 36/195 (18%)

Query: 118 TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEG----------ENDQG 167
             L L  N+I KI +D  F  L NL  L+L  N +  +  + F G          +N   
Sbjct: 293 KVLNLAYNKINKI-ADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIA 351

Query: 168 CLGDNYCPPKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQ 227
            +       +    +  L            ++L  + +   +++ + P       LS N+
Sbjct: 352 II-----QDQTFKFLEKLQT----------LDLRDNALTTIHFIPSIP----DIFLSGNK 392

Query: 228 IGFLSNFTFSPLSKLSQLILSYNKLQCIDRDA-LAGLKSLRIISLHGNDISMIP-EGAFA 285
           +  L     +     + + LS N+L+ +D    L  +  L+I+ L+ N  S    +   +
Sbjct: 393 LVTLPKINLT----ANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPS 448

Query: 286 DLHAITHLAIGGNPL 300
           +  ++  L +G N L
Sbjct: 449 ENPSLEQLFLGENML 463

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 50.6 bits (121), Expect = 1e-06
 Identities = 14/71 (19%), Positives = 27/71 (38%), Gaps = 6/71 (8%)

Query: 97  TRVDCSQRGLKEIPKDI-----PLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQ 151
                    +K+  ++            L L+   +  + +  +F  L +L  L+L  N+
Sbjct: 243 MGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSL-NSRVFETLKDLKVLNLAYNK 301

Query: 152 VTGIEDNAFEG 162
           +  I D AF G
Sbjct: 302 INKIADEAFYG 312

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  120 bits (302), Expect = 8e-29
 Identities = 28/110 (25%), Positives = 53/110 (48%), Gaps = 3/110 (2%)

Query: 222 DLSNNQI-GFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIP 280
            ++ N          F+ L  L+ L LS  +L+ +   A   L SL+++++  N +  +P
Sbjct: 451 KMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVP 510

Query: 281 EGAFADLHAITHLAIGGNPLYCDC-GLAWLSEWVKR-DYVEPGIARCTEP 328
           +G F  L ++  + +  NP  C C  + +LS W+ +    E G A+C+  
Sbjct: 511 DGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQGSAKCSGS 560

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 89.4 bits (222), Expect = 6e-19
 Identities = 28/86 (32%), Positives = 41/86 (47%)

Query: 215 PVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGN 274
           P ST   DLS N +  L +++F    +L  L LS  ++Q I+  A   L  L  + L GN
Sbjct: 27  PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN 86

Query: 275 DISMIPEGAFADLHAITHLAIGGNPL 300
            I  +  GAF+ L ++  L      L
Sbjct: 87  PIQSLALGAFSGLSSLQKLVAVETNL 112

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 85.5 bits (212), Expect = 1e-17
 Identities = 21/79 (26%), Positives = 38/79 (48%)

Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPE 281
           DLS  +I  + +  +  LS LS LIL+ N +Q +   A +GL SL+ +     +++ +  
Sbjct: 58  DLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLEN 117

Query: 282 GAFADLHAITHLAIGGNPL 300
                L  +  L +  N +
Sbjct: 118 FPIGHLKTLKELNVAHNLI 136

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 83.6 bits (207), Expect = 4e-17
 Identities = 21/74 (28%), Positives = 32/74 (43%), Gaps = 1/74 (1%)

Query: 89  PSGCSCDGTRVDCSQRGLKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLR 148
           P           C +    +IP ++P  T  L L+ N +  + S   F   P L  LDL 
Sbjct: 2   PCVEVVPNITYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGS-YSFFSFPELQVLDLS 60

Query: 149 RNQVTGIEDNAFEG 162
           R ++  IED A++ 
Sbjct: 61  RCEIQTIEDGAYQS 74

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 81.7 bits (202), Expect = 2e-16
 Identities = 38/202 (18%), Positives = 69/202 (34%), Gaps = 17/202 (8%)

Query: 115 LYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDNYC 174
           L   E  L   +        LF  L N+    L    +  ++D ++        L +   
Sbjct: 257 LTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKF 316

Query: 175 ---PPKCTCTVRVL-FYDGRAGECYIAVELFS-----------SRIRVSYYVGNYPVSTM 219
              P     +++ L F   + G  +  V+L S           S             S  
Sbjct: 317 GQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLK 376

Query: 220 YRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCI-DRDALAGLKSLRIISLHGNDISM 278
           Y DLS N +  +S+  F  L +L  L   ++ L+ + +      L++L  + +      +
Sbjct: 377 YLDLSFNGVITMSS-NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV 435

Query: 279 IPEGAFADLHAITHLAIGGNPL 300
              G F  L ++  L + GN  
Sbjct: 436 AFNGIFNGLSSLEVLKMAGNSF 457

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 79.0 bits (195), Expect = 1e-15
 Identities = 21/80 (26%), Positives = 38/80 (47%), Gaps = 1/80 (1%)

Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPE 281
            L+ N I  L+   FS LS L +L+     L  ++   +  LK+L+ +++  N I     
Sbjct: 82  ILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKL 141

Query: 282 G-AFADLHAITHLAIGGNPL 300
              F++L  + HL +  N +
Sbjct: 142 PEYFSNLTNLEHLDLSSNKI 161

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 70.1 bits (172), Expect = 8e-13
 Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 6/84 (7%)

Query: 222 DLSNNQIGFLS-NFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRI----ISLHGNDI 276
           ++++N I        FS L+ L  L LS NK+Q I    L  L  + +    + L  N +
Sbjct: 130 NVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPM 189

Query: 277 SMIPEGAFADLHAITHLAIGGNPL 300
           + I  GAF ++  +  L +  N  
Sbjct: 190 NFIQPGAFKEIR-LHKLTLRNNFD 212

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 68.6 bits (168), Expect = 2e-12
 Identities = 37/214 (17%), Positives = 62/214 (28%), Gaps = 24/214 (11%)

Query: 100 DCSQRGLKEIPKDI--PLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRR------NQ 151
           D S   +  I       +   +L L +N             L  L    L          
Sbjct: 183 DLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGN 242

Query: 152 VTGIEDNAFEG--ENDQGCLGDNYCPPKCTCTVRVLFYDGRAGECYIAVELFSSRI-RVS 208
           +   + +A EG            Y        +  LF        +    L S  I RV 
Sbjct: 243 LEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIID-LFNCLTNVSSF---SLVSVTIERVK 298

Query: 209 YYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRI 268
            +  N+     + +L N +      F    L  L +L  + NK       +   L SL  
Sbjct: 299 DFSYNF--GWQHLELVNCKF---GQFPTLKLKSLKRLTFTSNKGGNAF--SEVDLPSLEF 351

Query: 269 ISLHGNDISMI--PEGAFADLHAITHLAIGGNPL 300
           + L  N +S       +     ++ +L +  N +
Sbjct: 352 LDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGV 385

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 67.8 bits (166), Expect = 4e-12
 Identities = 32/205 (15%), Positives = 50/205 (24%), Gaps = 25/205 (12%)

Query: 118 TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEG------ENDQGCLGD 171
            EL +  N I   K    F  L NL  LDL  N++  I              N    L  
Sbjct: 127 KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL 186

Query: 172 N---YCPPKC--TCTVRVLFYDGRAGECYIAVELFS--SRIRVSYYVGNYPVSTMYRDLS 224
           N   +  P       +  L          +        + + V   V            +
Sbjct: 187 NPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLG-------EFRN 239

Query: 225 NNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDR---DALAGLKSLRIISLHGNDISMIPE 281
              +          L  L+        L        D    L ++   SL    I  + +
Sbjct: 240 EGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD 299

Query: 282 GAFADLHAITHLAIGGNPLYCDCGL 306
            ++       HL +          L
Sbjct: 300 FSY--NFGWQHLELVNCKFGQFPTL 322

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 67.4 bits (165), Expect = 6e-12
 Identities = 28/193 (14%), Positives = 58/193 (30%), Gaps = 34/193 (17%)

Query: 118 TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIED-NAFEGENDQGCLGDNYCPP 176
            +L+  +  +  +  +   G L  L +L++  N +   +    F    +   L  +    
Sbjct: 103 QKLVAVETNLASL-ENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161

Query: 177 KCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSNFTF 236
           +                  I              +   P+  +  DLS N + F+    F
Sbjct: 162 QS-----------------IYCTDLR-------VLHQMPLLNLSLDLSLNPMNFIQPGAF 197

Query: 237 SPLSKLSQLILSYNKLQC-IDRDALAGLKSLRIISL------HGNDISMIPEGAFADLHA 289
             +  L +L L  N     + +  + GL  L +  L      +  ++    + A   L  
Sbjct: 198 KEIR-LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCN 256

Query: 290 ITHLAIGGNPLYC 302
           +T        L  
Sbjct: 257 LTIEEFRLAYLDY 269

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 54.0 bits (130), Expect = 1e-07
 Identities = 13/68 (19%), Positives = 24/68 (35%), Gaps = 2/68 (2%)

Query: 97  TRVDCSQRGLKEIPKDIPLYT--TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTG 154
             +D S  G+  +  +         L    + + ++    +F  L NLI LD+       
Sbjct: 376 KYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV 435

Query: 155 IEDNAFEG 162
             +  F G
Sbjct: 436 AFNGIFNG 443

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 47.4 bits (113), Expect = 1e-05
 Identities = 12/45 (26%), Positives = 23/45 (51%), Gaps = 1/45 (2%)

Query: 118 TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEG 162
           T L L+  ++ ++ S   F  L +L  L++  NQ+  + D  F+ 
Sbjct: 473 TFLDLSQCQLEQL-SPTAFNSLSSLQVLNMASNQLKSVPDGIFDR 516

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 45.1 bits (107), Expect = 5e-05
 Identities = 12/45 (26%), Positives = 18/45 (40%)

Query: 118 TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEG 162
             L +  N   +     +F  L NL  LDL + Q+  +   AF  
Sbjct: 448 EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNS 492

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score =  116 bits (291), Expect = 1e-28
 Identities = 43/360 (11%), Positives = 79/360 (21%), Gaps = 96/360 (26%)

Query: 87  ACPSG-CSCDGTRVDCSQRGLKEIPKDIPLYTT------------------------ELI 121
            C    C C      C +  + EIP D+P                            ++ 
Sbjct: 1   GCHHRICHCSNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIE 60

Query: 122 LNDNEIG-----------------------KIKS--DGLFGRLPNLIKLDLRRNQVTGIE 156
           ++ N++                         +       F  LPNL  L +    +  + 
Sbjct: 61  ISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLP 120

Query: 157 DNAFEGENDQGCLGDNYCPPKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPV 216
           D                          +L          I    F               
Sbjct: 121 DVHKIHSL----------------QKVLLDIQDNINIHTIERNSFV----------GLSF 154

Query: 217 STMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDI 276
            ++   L+ N I  + N  F+        +   N L+ +  D   G     I+ +    I
Sbjct: 155 ESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRI 214

Query: 277 SMIPEGAFADLHAITHLAIG-------------------GNPLYCDCGLAWLSEWVKRDY 317
             +P     +L  +   +                       P +C     W  +  +   
Sbjct: 215 HSLPSYGLENLKKLRARSTYNLKKLPTLEKLVALMEASLTYPSHCCAFANWRRQISELHP 274

Query: 318 VEPGIARCTEPASMRDKLLLTAPASSFQCKEKVSDEILSKCNACYKSPCTNQGV-CEPLP 376
           +        E   M       +  +            ++     Y        V C P P
Sbjct: 275 ICNKSILRQEVDYMTQARGQRSSLAEDNESSYSRGFDMTYTEFDYDLCNEVVDVTCSPKP 334

>2c4f_L Coagulation factor VII precursor; blood coagulation, serine protease, EGF, EGF-like domain, GLA, receptor enzyme, glycoprotein, hydrolase, protease; HET: CGU GLC FUC NAG GIL; 1.72A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.32.1.1 PDB: 1w2k_L* 1w0y_L* 1z6j_L* 2b8o_L* 2aer_L* 2ec9_L* 2fir_L* 2a2q_L* 1fak_L* 1o5d_L* 1wqv_L* 1wss_L* 1wtg_L* 1wun_L* 1wv7_L* 1dan_L* 2aei_L* 2b7d_L* 2f9b_L* 2flb_L* ... Length = 142

 Score =  109 bits (275), Expect = 2e-28
 Identities = 32/119 (26%), Positives = 46/119 (38%), Gaps = 7/119 (5%)

Query: 415 EEGRFNCECAP-GYTGDRCEINIDDCLSHKCENNATCVDLIQAYECRCAPGFQGEFCQTK 473
           EE R   + A           + D C S  C+N  +C D +Q+Y C C P F+G  C+T 
Sbjct: 25  EEAREIFKDAERTKLFWISYSDGDQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETH 84

Query: 474 TPFCAGEYNPCRNG---ARCLDHF-SHYTCECTPGFSGVNCTVNVDDCVNHMCQNGGTC 528
                       NG     C DH  +  +C C  G+S +   V+    V + C      
Sbjct: 85  KDDQLI--CVNENGGCEQYCSDHTGTKRSCRCHEGYSLLADGVSCTPTVEYPCGKIPIL 141

>2c4f_L Coagulation factor VII precursor; blood coagulation, serine protease, EGF, EGF-like domain, GLA, receptor enzyme, glycoprotein, hydrolase, protease; HET: CGU GLC FUC NAG GIL; 1.72A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.32.1.1 PDB: 1w2k_L* 1w0y_L* 1z6j_L* 2b8o_L* 2aer_L* 2ec9_L* 2fir_L* 2a2q_L* 1fak_L* 1o5d_L* 1wqv_L* 1wss_L* 1wtg_L* 1wun_L* 1wv7_L* 1dan_L* 2aei_L* 2b7d_L* 2f9b_L* 2flb_L* ... Length = 142

 Score = 88.5 bits (220), Expect = 6e-21
 Identities = 23/96 (23%), Positives = 36/96 (37%), Gaps = 4/96 (4%)

Query: 358 CNACYKSPCTNQGVCEPLPERQYQCRCTPGYHGQHCEFMIDACYGNPCRNSGT---CKLL 414
            + C  SPC N G C+    + Y C C P + G++CE   D        N G    C   
Sbjct: 47  GDQCASSPCQNGGSCKDQL-QSYICFCLPAFEGRNCETHKDDQLICVNENGGCEQYCSDH 105

Query: 415 EEGRFNCECAPGYTGDRCEINIDDCLSHKCENNATC 450
              + +C C  GY+     ++    + + C      
Sbjct: 106 TGTKRSCRCHEGYSLLADGVSCTPTVEYPCGKIPIL 141

>2c4f_L Coagulation factor VII precursor; blood coagulation, serine protease, EGF, EGF-like domain, GLA, receptor enzyme, glycoprotein, hydrolase, protease; HET: CGU GLC FUC NAG GIL; 1.72A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.32.1.1 PDB: 1w2k_L* 1w0y_L* 1z6j_L* 2b8o_L* 2aer_L* 2ec9_L* 2fir_L* 2a2q_L* 1fak_L* 1o5d_L* 1wqv_L* 1wss_L* 1wtg_L* 1wun_L* 1wv7_L* 1dan_L* 2aei_L* 2b7d_L* 2f9b_L* 2flb_L* ... Length = 142

 Score = 82.8 bits (205), Expect = 5e-19
 Identities = 29/135 (21%), Positives = 45/135 (33%), Gaps = 21/135 (15%)

Query: 450 CVDLIQAYECRC------APGFQGEFCQTKTPFCAGEYNPCRNGARCLDHFSHYTCECTP 503
           C +   ++E                   +    CA   +PC+NG  C D    Y C C P
Sbjct: 17  CKEEQCSFEEAREIFKDAERTKLFWISYSDGDQCAS--SPCQNGGSCKDQLQSYICFCLP 74

Query: 504 GFSGVNCTVNVDDCVNHMCQNGGT---CVDGI-NDYTCKCEGDFVGKFCEIAPFVAMMYP 559
            F G NC  + DD +  + +NGG    C D      +C+C   +      +         
Sbjct: 75  AFEGRNCETHKDDQLICVNENGGCEQYCSDHTGTKRSCRCHEGYSLLADGV--------- 125

Query: 560 QTSPCQHHDCKNGIC 574
             +P   + C     
Sbjct: 126 SCTPTVEYPCGKIPI 140

>2c4f_L Coagulation factor VII precursor; blood coagulation, serine protease, EGF, EGF-like domain, GLA, receptor enzyme, glycoprotein, hydrolase, protease; HET: CGU GLC FUC NAG GIL; 1.72A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.32.1.1 PDB: 1w2k_L* 1w0y_L* 1z6j_L* 2b8o_L* 2aer_L* 2ec9_L* 2fir_L* 2a2q_L* 1fak_L* 1o5d_L* 1wqv_L* 1wss_L* 1wtg_L* 1wun_L* 1wv7_L* 1dan_L* 2aei_L* 2b7d_L* 2f9b_L* 2flb_L* ... Length = 142

 Score = 77.4 bits (191), Expect = 4e-17
 Identities = 27/117 (23%), Positives = 38/117 (32%), Gaps = 14/117 (11%)

Query: 483 PCRNGARCLDHFSHYTCECTP-GFSGVNCTVNVDDCVNHMCQNGGTCVDGINDYTCKCEG 541
            C+   +C    +    +             + D C +  CQNGG+C D +  Y C C  
Sbjct: 16  ECKEE-QCSFEEAREIFKDAERTKLFWISYSDGDQCASSPCQNGGSCKDQLQSYICFCLP 74

Query: 542 DFVGKFCEIAPFVAMMYPQTSPCQHHDCKNGICFQ---PQGSNDYLCKCAPGYSGKE 595
            F G+ CE                    +NG C Q           C+C  GYS   
Sbjct: 75  AFEGRNCETH---------KDDQLICVNENGGCEQYCSDHTGTKRSCRCHEGYSLLA 122

>2c4f_L Coagulation factor VII precursor; blood coagulation, serine protease, EGF, EGF-like domain, GLA, receptor enzyme, glycoprotein, hydrolase, protease; HET: CGU GLC FUC NAG GIL; 1.72A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.32.1.1 PDB: 1w2k_L* 1w0y_L* 1z6j_L* 2b8o_L* 2aer_L* 2ec9_L* 2fir_L* 2a2q_L* 1fak_L* 1o5d_L* 1wqv_L* 1wss_L* 1wtg_L* 1wun_L* 1wv7_L* 1dan_L* 2aei_L* 2b7d_L* 2f9b_L* 2flb_L* ... Length = 142

 Score = 54.3 bits (131), Expect = 4e-09
 Identities = 21/73 (28%), Positives = 26/73 (35%), Gaps = 12/73 (16%)

Query: 1   NGGTCVDGINDYTCKCEGDFVGKFCEIAPFVAMMYPQTSPCQHHDCKNGICFQ---PQGS 57
           NGG+C D +  Y C C   F G+ CE                    +NG C Q       
Sbjct: 57  NGGSCKDQLQSYICFCLPAFEGRNCETH---------KDDQLICVNENGGCEQYCSDHTG 107

Query: 58  NDYLCKCAPGYSG 70
               C+C  GYS 
Sbjct: 108 TKRSCRCHEGYSL 120

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  112 bits (283), Expect = 2e-26
 Identities = 39/224 (17%), Positives = 66/224 (29%), Gaps = 56/224 (25%)

Query: 118 TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDNYCPPK 177
             L ++         +G+F  L +L  L +          N+F+         +      
Sbjct: 424 IYLDISHTHTRVA-FNGIFNGLSSLEVLKMA--------GNSFQENFLPDIFTE------ 468

Query: 178 CTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSNFTFS 237
               +  L                                    DLS  Q+  LS   F+
Sbjct: 469 -LRNLTFL------------------------------------DLSQCQLEQLSPTAFN 491

Query: 238 PLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADL-HAITHLAIG 296
            LS L  L +S+N    +D      L SL+++    N I    +        ++  L + 
Sbjct: 492 SLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLT 551

Query: 297 GNPLYCDCGLAWLSEWVKR---DYVEPGIARCTEPASMRDKLLL 337
            N   C C      +W+K      VE     C  P+  +   +L
Sbjct: 552 QNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQGMPVL 595

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 85.5 bits (212), Expect = 1e-17
 Identities = 28/86 (32%), Positives = 41/86 (47%)

Query: 215 PVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGN 274
           P ST   DLS N +  L +++F    +L  L LS  ++Q I+  A   L  L  + L GN
Sbjct: 27  PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN 86

Query: 275 DISMIPEGAFADLHAITHLAIGGNPL 300
            I  +  GAF+ L ++  L      L
Sbjct: 87  PIQSLALGAFSGLSSLQKLVAVETNL 112

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 84.7 bits (210), Expect = 2e-17
 Identities = 32/198 (16%), Positives = 61/198 (30%), Gaps = 33/198 (16%)

Query: 115 LYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDNYC 174
           L   E  L   +        LF  L N+    L    +  ++D ++        L +   
Sbjct: 257 LTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKF 316

Query: 175 ---PPKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTM------YRDLSN 225
              P     +++ L                      +   G    S +      + DLS 
Sbjct: 317 GQFPTLKLKSLKRL--------------------TFTSNKGGNAFSEVDLPSLEFLDLSR 356

Query: 226 NQIGFLS--NFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDIS-MIPEG 282
           N + F    + +    + L  L LS+N +  +  +   GL+ L  +    +++  M    
Sbjct: 357 NGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFS 415

Query: 283 AFADLHAITHLAIGGNPL 300
            F  L  + +L I     
Sbjct: 416 VFLSLRNLIYLDISHTHT 433

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 82.4 bits (204), Expect = 1e-16
 Identities = 21/79 (26%), Positives = 38/79 (48%)

Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPE 281
           DLS  +I  + +  +  LS LS LIL+ N +Q +   A +GL SL+ +     +++ +  
Sbjct: 58  DLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLEN 117

Query: 282 GAFADLHAITHLAIGGNPL 300
                L  +  L +  N +
Sbjct: 118 FPIGHLKTLKELNVAHNLI 136

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 78.9 bits (195), Expect = 2e-15
 Identities = 21/74 (28%), Positives = 32/74 (43%), Gaps = 1/74 (1%)

Query: 89  PSGCSCDGTRVDCSQRGLKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLR 148
           P           C +    +IP ++P  T  L L+ N +  + S   F   P L  LDL 
Sbjct: 2   PCVEVVPNITYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSY-SFFSFPELQVLDLS 60

Query: 149 RNQVTGIEDNAFEG 162
           R ++  IED A++ 
Sbjct: 61  RCEIQTIEDGAYQS 74

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 77.4 bits (191), Expect = 5e-15
 Identities = 21/80 (26%), Positives = 38/80 (47%), Gaps = 1/80 (1%)

Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPE 281
            L+ N I  L+   FS LS L +L+     L  ++   +  LK+L+ +++  N I     
Sbjct: 82  ILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKL 141

Query: 282 G-AFADLHAITHLAIGGNPL 300
              F++L  + HL +  N +
Sbjct: 142 PEYFSNLTNLEHLDLSSNKI 161

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 75.5 bits (186), Expect = 2e-14
 Identities = 28/191 (14%), Positives = 55/191 (28%), Gaps = 26/191 (13%)

Query: 118 TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEG--ENDQGCLGDNYCP 175
           +   L    I ++K    F        L+L   +         +                
Sbjct: 285 SSFSLVSVTIERVKD---FSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAF 341

Query: 176 PKCTCT-VRVLFYDGRAGECYIAVELFSSRIRVSYYV----GNYPVSTMYRDLSNNQIGF 230
            +     +  L             +L  + +               S  Y DLS N +  
Sbjct: 342 SEVDLPSLEFL-------------DLSRNGLSFKGCCSQSDFGTT-SLKYLDLSFNGVIT 387

Query: 231 LSNFTFSPLSKLSQLILSYNKLQ-CIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHA 289
           +S+  F  L +L  L   ++ L+   +      L++L  + +      +   G F  L +
Sbjct: 388 MSS-NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSS 446

Query: 290 ITHLAIGGNPL 300
           +  L + GN  
Sbjct: 447 LEVLKMAGNSF 457

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 71.2 bits (175), Expect = 4e-13
 Identities = 19/81 (23%), Positives = 32/81 (39%), Gaps = 2/81 (2%)

Query: 222 DLSNNQIGFLSNF-TFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDIS-MI 279
           D  ++ +  +S F  F  L  L  L +S+   +        GL SL ++ + GN      
Sbjct: 402 DFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENF 461

Query: 280 PEGAFADLHAITHLAIGGNPL 300
               F +L  +T L +    L
Sbjct: 462 LPDIFTELRNLTFLDLSQCQL 482

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 65.4 bits (160), Expect = 3e-11
 Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 6/84 (7%)

Query: 222 DLSNNQI-GFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRI----ISLHGNDI 276
           ++++N I  F     FS L+ L  L LS NK+Q I    L  L  + +    + L  N +
Sbjct: 130 NVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPM 189

Query: 277 SMIPEGAFADLHAITHLAIGGNPL 300
           + I  GAF ++  +  L +  N  
Sbjct: 190 NFIQPGAFKEIR-LHKLTLRNNFD 212

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 62.7 bits (153), Expect = 2e-10
 Identities = 30/212 (14%), Positives = 64/212 (30%), Gaps = 30/212 (14%)

Query: 118 TELILNDNEIGKIKSDGLFGRLPNL----IKLDLRRNQVTGIEDNAFEGEN----DQGCL 169
             L L+ N+I  I        L  +    + LDL  N +  I+  AF+           L
Sbjct: 152 EHLDLSSNKIQSIYCT-DLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLT---L 207

Query: 170 GDNYC----PPKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSN 225
            +N+        C   +  L          + +  F +   +  +  +         +  
Sbjct: 208 RNNFDSLNVMKTCIQGLAGLEVH------RLVLGEFRNEGNLEKFDKSALEGLCNLTIEE 261

Query: 226 NQIGFLSNF------TFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMI 279
            ++ +L  +       F+ L+ +S   L    ++ +     +     + + L        
Sbjct: 262 FRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERV--KDFSYNFGWQHLELVNCKFGQF 319

Query: 280 PEGAFADLHAITHLAIGGNPLYCDCGLAWLSE 311
           P      L  +T  +  G   + +  L  L  
Sbjct: 320 PTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEF 351

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 62.4 bits (152), Expect = 3e-10
 Identities = 40/208 (19%), Positives = 64/208 (30%), Gaps = 43/208 (20%)

Query: 114 PLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTG-----------------IE 156
           PL    L L+ N +  I   G F  +  L KL LR N  +                  + 
Sbjct: 176 PLLNLSLDLSLNPMNFI-QPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLV 233

Query: 157 DNAFEGENDQGCLGDNYCPPKCTCTVRVL---FYDGRAGECYIAVELFSSRIRVSYYVGN 213
              F  E +      +     C  T+      + D    +    ++LF+    VS +   
Sbjct: 234 LGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDI---IDLFNCLTNVSSF--- 287

Query: 214 YPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHG 273
                    L +  I  + +F++        L L   K        L  LK L   S  G
Sbjct: 288 --------SLVSVTIERVKDFSY--NFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKG 337

Query: 274 NDISMIPEGAFADLHAITHLAIGGNPLY 301
            +       +  DL ++  L +  N L 
Sbjct: 338 GNAF-----SEVDLPSLEFLDLSRNGLS 360

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 57.3 bits (139), Expect = 8e-09
 Identities = 33/197 (16%), Positives = 54/197 (27%), Gaps = 21/197 (10%)

Query: 118 TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEG------ENDQGCLGD 171
            EL +  N I   K    F  L NL  LDL  N++  I              N    L  
Sbjct: 127 KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL 186

Query: 172 NY---CPPKC--TCTVRVLFYDGRAGECYIAVELFS--SRIRVSY-YVGNYPVSTMYRDL 223
           N      P       +  L          +        + + V    +G +         
Sbjct: 187 NPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKF 246

Query: 224 SNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGA 283
             + +  L N T      L+ L    + +     D    L ++   SL    I  + + +
Sbjct: 247 DKSALEGLCNLTIEEFR-LAYLDYYLDDII----DLFNCLTNVSSFSLVSVTIERVKDFS 301

Query: 284 FADLHAITHLAIGGNPL 300
           +       HL +     
Sbjct: 302 Y--NFGWQHLELVNCKF 316

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score =  106 bits (267), Expect = 3e-26
 Identities = 57/301 (18%), Positives = 96/301 (31%), Gaps = 97/301 (32%)

Query: 87  ACPS--GCSCD--GTRVDCSQRGLKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNL 142
            C +  GC+C+     VDC  + L  +P  IP  T +L L    +  + SD  F  L  L
Sbjct: 3   TCETVTGCTCNEGKKEVDCQGKSLDSVPSGIPADTEKLDLQSTGLATL-SDATFRGLTKL 61

Query: 143 IKLDLRRNQVTGIEDNAFEGENDQGCLGDNYCPPKCTCTVRVLFYDGRAGECYIAVELFS 202
             L+L  NQ+  +    F+                                         
Sbjct: 62  TWLNLDYNQLQTLSAGVFDD---------------------------------------- 81

Query: 203 SRIRVSYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAG 262
                               L+NNQ+  L    F  L++L +L L  N+L+ +       
Sbjct: 82  ------------LTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDR 129

Query: 263 LKSLRIISLHGNDISMIPEGAF------------------------ADLHAITHLAIGGN 298
           L  L+ + L+ N +  IP GAF                          L  +  + + GN
Sbjct: 130 LTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189

Query: 299 PLYCDC-GLAWLSEWVKR------------DYVEPGIARCTEPASMRDKLLLTAPASSFQ 345
              C    + +LS+W++              +  P    C++   +R    +T     ++
Sbjct: 190 QFDCSRCEILYLSQWIRENSNKVKDGTGQNLHESPDGVTCSDGKVVRT---VTNETLKYE 246

Query: 346 C 346
           C
Sbjct: 247 C 247

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score =  106 bits (266), Expect = 4e-26
 Identities = 33/246 (13%), Positives = 74/246 (30%), Gaps = 61/246 (24%)

Query: 86  AACPSGCSC-DGTRVDCSQRGLKEIPKDIPLYTTELILNDNEIGKIKSD----------- 133
                 C C        + + ++ IP  +P  T  L L +  +  I S            
Sbjct: 2   GCSSPPCECHQEEDFRVTCKDIQRIP-SLPPSTQTLKLIETHLRTIPSHAFSNLPNISRI 60

Query: 134 -------------GLFGRLPNLIKLDLRRNQ-VTGIEDNAFEGENDQGCLGDNYCPPKCT 179
                          F  L  +  +++R  + +T I+ +A +             P    
Sbjct: 61  YVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKE-----------LP---- 105

Query: 180 CTVRVLFYDGRAGECYIAVELFSSRIRV---SYYVGNYPVSTMYRDLSNNQIGFLSNFTF 236
             ++ L              +F++ +++      V +  +  +     N  +  +    F
Sbjct: 106 -LLKFLG-------------IFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAF 151

Query: 237 SPLSKLSQ-LILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLH-AITHLA 294
             L   +  L L  N    +   A  G K   +       +++I + AF  ++   + L 
Sbjct: 152 QGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLD 211

Query: 295 IGGNPL 300
           +    +
Sbjct: 212 VSQTSV 217

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 62.3 bits (152), Expect = 4e-11
 Identities = 29/175 (16%), Positives = 46/175 (26%), Gaps = 34/175 (19%)

Query: 104 RGLKEIPKDI--PLYT-TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRN-QVTGIEDNA 159
           R L  I  D    L     L + +  +                 L++  N  +T I  NA
Sbjct: 91  RNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNA 150

Query: 160 FEGENDQGCLGDNYCPPKCTCTVRVLFYDGRAGECYIAVELFSSRIR-VSYYVGNYPVST 218
           F+G                      L              L+++    V  Y  N     
Sbjct: 151 FQG---------------LCNETLTLK-------------LYNNGFTSVQGYAFNGTKLD 182

Query: 219 MYRDLSNNQIGFLSNFTFSPL-SKLSQLILSYNKLQCIDRDALAGLKSLRIISLH 272
                 N  +  +    F  + S  S L +S   +  +    L  LK L   +  
Sbjct: 183 AVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLEHLKELIARNTW 237

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score =  105 bits (265), Expect = 1e-25
 Identities = 52/274 (18%), Positives = 96/274 (35%), Gaps = 66/274 (24%)

Query: 86  AACPSGCSCDGTRVDCSQRGLKEIPKDIPLY-----------------------TTELIL 122
              P     +  + +  ++ + +      L                           L L
Sbjct: 11  QIFPDDAFAETIKANLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVRYLAL 70

Query: 123 NDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDNYCPPKCTCTV 182
             N   K+        L NL  L L  NQ+  + +  F+                     
Sbjct: 71  GGN---KLHDISALKELTNLTYLILTGNQLQSLPNGVFDK------------LTNLK--- 112

Query: 183 RVLFYDGRAGECYIAVELFSSRI-RVSYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSK 241
                          + L  +++  +   V +   +  Y +L++NQ+  L    F  L+ 
Sbjct: 113 --------------ELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTN 158

Query: 242 LSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIGGNPLY 301
           L++L LSYN+LQ +       L  L+ + L+ N +  +P+G F  L ++ ++ +  NP  
Sbjct: 159 LTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD 218

Query: 302 CDC-GLAWLSEWVKR---------DYVEPGIARC 325
           C C G+ +LSEW+ +           V P  A+C
Sbjct: 219 CTCPGIRYLSEWINKHSGVVRNSAGSVAPDSAKC 252

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score =  103 bits (259), Expect = 2e-25
 Identities = 61/228 (26%), Positives = 96/228 (42%), Gaps = 54/228 (23%)

Query: 88  CPSGCSCDGTRVDCSQRGLKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDL 147
           CPS CSC GT V+C  +G   +P  IP  TT L L  N +  +  +G+F  L +L +L L
Sbjct: 1   CPSRCSCSGTTVECYSQGRTSVPTGIPAQTTYLDLETNSLKSL-PNGVFDELTSLTQLYL 59

Query: 148 RRNQVTGIEDNAFEGENDQGCLGDNYCPPKCTCTVRVLFYDGRAGECYIAVELFSSRIRV 207
             N++  + +  F                                               
Sbjct: 60  GGNKLQSLPNGVF----------------------------------------------- 72

Query: 208 SYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLR 267
                N   S  Y +LS NQ+  L N  F  L++L +L L+ N+LQ +       L  L+
Sbjct: 73  -----NKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLK 127

Query: 268 IISLHGNDISMIPEGAFADLHAITHLAIGGNPLYCDC-GLAWLSEWVK 314
            + L+ N +  +P+G F  L ++ ++ +  NP  C C G+ +LSEW+ 
Sbjct: 128 DLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGIRYLSEWIN 175

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score =  105 bits (264), Expect = 7e-25
 Identities = 32/163 (19%), Positives = 53/163 (32%), Gaps = 14/163 (8%)

Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAG---LKSLRIISLHGNDISM 278
            L NN I  +    F  +++L +L LS N++     + +     L  L ++ L  N +  
Sbjct: 118 LLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKK 177

Query: 279 IPEGAFADLHAITH--LAIGGNPLYCDCGLAWLSEWVKRDYVEPGI-----ARCTEPASM 331
           +P      L A     L +  NPL CDC L  L    +   +   +       C     +
Sbjct: 178 LPLTDLQKLPAWVKNGLYLHNNPLECDCKLYQLFSHWQYRQLSSVMDFQEDLYCMHSKKL 237

Query: 332 RDKLLLTAPASSFQCKEKVSDEILSKCNACYKSPCTNQGVCEP 374
            +   L      F C E       +         C  +     
Sbjct: 238 HNIFSL----DFFNCSEYKESAWEAHLGDTLTIRCDTKQQGMT 276

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score =   99 bits (249), Expect = 6e-23
 Identities = 24/77 (31%), Positives = 40/77 (51%)

Query: 86  AACPSGCSCDGTRVDCSQRGLKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKL 145
            +CP+ C C    + CS++ L  +P+ +P YT  L L+ N + +++++    RL NL  L
Sbjct: 10  VSCPANCLCASNILSCSKQQLPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSL 69

Query: 146 DLRRNQVTGIEDNAFEG 162
            L  N +  I   AF  
Sbjct: 70  LLSHNHLNFISSEAFVP 86

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 82.2 bits (203), Expect = 4e-17
 Identities = 24/79 (30%), Positives = 42/79 (53%)

Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPE 281
            LS+N + F+S+  F P+  L  L LS N L  +D    + L++L ++ L+ N I ++  
Sbjct: 70  LLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDR 129

Query: 282 GAFADLHAITHLAIGGNPL 300
            AF D+  +  L +  N +
Sbjct: 130 NAFEDMAQLQKLYLSQNQI 148

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 82.2 bits (203), Expect = 5e-17
 Identities = 28/87 (32%), Positives = 46/87 (52%), Gaps = 1/87 (1%)

Query: 215 PVSTMYRDLSNNQIGFL-SNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHG 273
           P  T   DLS+N +  L + +T + L+ L  L+LS+N L  I  +A   + +LR + L  
Sbjct: 38  PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97

Query: 274 NDISMIPEGAFADLHAITHLAIGGNPL 300
           N +  + E  F+DL A+  L +  N +
Sbjct: 98  NHLHTLDEFLFSDLQALEVLLLYNNHI 124

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 46.4 bits (110), Expect = 2e-05
 Identities = 11/45 (24%), Positives = 19/45 (42%), Gaps = 1/45 (2%)

Query: 118 TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEG 162
             L+L +N I  +     F  +  L KL L +NQ++       + 
Sbjct: 115 EVLLLYNNHIVVV-DRNAFEDMAQLQKLYLSQNQISRFPVELIKD 158

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  107 bits (268), Expect = 1e-24
 Identities = 46/249 (18%), Positives = 95/249 (38%), Gaps = 61/249 (24%)

Query: 83  LIDAACPSGCSCDGTRVDCSQRGLKEIPKDIPL---YTTELILNDNEIGKI-KSDGLFGR 138
           ++   CPS  S     +D S   L +   +          LIL  N++ ++ K   +  +
Sbjct: 314 MVHMLCPSKIS-PFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQ 372

Query: 139 LPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDNYCPPKCTCTVRVLFYDGRAGECYIAV 198
           + +L +LD+ +N V+                   Y   K  C                  
Sbjct: 373 MKSLQQLDISQNSVS-------------------YDEKKGDC------------------ 395

Query: 199 ELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRD 258
                         ++  S +  ++S+N +            ++  L L  NK++ I + 
Sbjct: 396 --------------SWTKSLLSLNMSSNIL--TDTIFRCLPPRIKVLDLHSNKIKSIPKQ 439

Query: 259 ALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIGGNPLYCDC-GLAWLSEWVKRDY 317
            +  L++L+ +++  N +  +P+G F  L ++  + +  NP  C C  + +LS W+ ++ 
Sbjct: 440 VV-KLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNS 498

Query: 318 -VEPGIARC 325
             E G A+C
Sbjct: 499 QKEQGSAKC 507

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 75.3 bits (185), Expect = 2e-14
 Identities = 22/86 (25%), Positives = 34/86 (39%), Gaps = 3/86 (3%)

Query: 215 PVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGN 274
              T   ++S N I  L       LSKL  LI+S+N++Q +D       + L  + L  N
Sbjct: 20  SQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN 79

Query: 275 DISMIPEGAFADLHAITHLAIGGNPL 300
            +  I          + HL +  N  
Sbjct: 80  KLVKIS---CHPTVNLKHLDLSFNAF 102

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 71.4 bits (175), Expect = 3e-13
 Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 1/64 (1%)

Query: 99  VDCSQRGLKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDN 158
           VD S+ GL  +PKD+   TT L ++ N I ++        L  L  L +  N++  ++ +
Sbjct: 5   VDRSKNGLIHVPKDLSQKTTILNISQNYISEL-WTSDILSLSKLRILIISHNRIQYLDIS 63

Query: 159 AFEG 162
            F+ 
Sbjct: 64  VFKF 67

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 64.5 bits (157), Expect = 4e-11
 Identities = 13/83 (15%), Positives = 28/83 (33%), Gaps = 2/83 (2%)

Query: 220 YRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMI 279
            ++ + +    +     S +S    L  S N L     +    L  L  + L  N +  +
Sbjct: 304 IKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKEL 363

Query: 280 PE--GAFADLHAITHLAIGGNPL 300
            +       + ++  L I  N +
Sbjct: 364 SKIAEMTTQMKSLQQLDISQNSV 386

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 61.8 bits (150), Expect = 4e-10
 Identities = 8/81 (9%), Positives = 27/81 (33%)

Query: 220 YRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMI 279
              + ++  GF  ++ +   S ++    + +  + +     + +     +    N ++  
Sbjct: 280 IHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDT 339

Query: 280 PEGAFADLHAITHLAIGGNPL 300
                  L  +  L +  N L
Sbjct: 340 VFENCGHLTELETLILQMNQL 360

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 51.8 bits (124), Expect = 4e-07
 Identities = 26/233 (11%), Positives = 49/233 (21%), Gaps = 37/233 (15%)

Query: 106 LKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEG--- 162
           L +I     +    L L+ N    +     FG +  L  L L    +             
Sbjct: 81  LVKISCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNI 140

Query: 163 -------------ENDQGCLGD----------------NYCPPKCTCTVRVLFYDGRAGE 193
                        + D   L D                ++       TV  L        
Sbjct: 141 SKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCV 200

Query: 194 CYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQ 253
                  +   I           +    ++      F+        + +    +S  KLQ
Sbjct: 201 LEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQ 260

Query: 254 CIDRDALA-----GLKSLRIISLHGNDISMIPEGAFADLHAITHLAIGGNPLY 301
                         LK+L I  +  +         +     +       +   
Sbjct: 261 GQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTR 313

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 44.1 bits (104), Expect = 1e-04
 Identities = 22/209 (10%), Positives = 57/209 (27%), Gaps = 11/209 (5%)

Query: 103 QRGLKEIPKDIPLYTTELILNDNEIGKIKSDGLFG-RLPNLIKLDLRRNQVTGIEDNAFE 161
           ++        + +    L+L +    K   +GL      +L  +     +   I D + +
Sbjct: 128 EKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVK 187

Query: 162 GENDQGCLGDNYCPPKCTCTVRVLFYDGRAGEC-----YIAVELFSSRIRVSYYVGNYPV 216
              +              C+  +                +     +    +      +  
Sbjct: 188 TVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHT 247

Query: 217 STMYRDLSNNQIGFLSNF-----TFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISL 271
           +  Y  +SN ++    +F     + + L  LS   +  +              ++ I + 
Sbjct: 248 TVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNF 307

Query: 272 HGNDISMIPEGAFADLHAITHLAIGGNPL 300
             +   M+     + +    HL    N L
Sbjct: 308 TVSGTRMVHMLCPSKISPFLHLDFSNNLL 336

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  102 bits (256), Expect = 4e-23
 Identities = 29/164 (17%), Positives = 54/164 (32%), Gaps = 17/164 (10%)

Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPE 281
            +SNN++  L+     P+  L  L LS+N L  ++R+       L  + L  N I  +  
Sbjct: 284 YISNNRLVALNL-YGQPIPTLKVLDLSHNHLLHVERNQP-QFDRLENLYLDHNSIVTLKL 341

Query: 282 GAFADLHAITHLAIGGNPLYCDCGLAWLSEWVKRDY------------VEPGIARCTEPA 329
                L    +L +  N   C+   A      +               +E G+       
Sbjct: 342 STHHTL---KNLTLSHNDWDCNSLRALFRNVARPAVDDADQHCKIDYQLEHGLCCKESDK 398

Query: 330 SMRDKLLLTAPASSFQCKEKVSDEILSKCNACYKSPCTNQGVCE 373
              D+LL     +S   K + +    S  +        +  + +
Sbjct: 399 PYLDRLLQYIALTSVVEKVQRAQGRCSATDTINSVQSLSHYITQ 442

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 93.5 bits (232), Expect = 4e-20
 Identities = 18/79 (22%), Positives = 40/79 (50%)

Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPE 281
           +L++ QI  +  + F+    + +L + +N ++ +       +  L ++ L  ND+S +P 
Sbjct: 81  NLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPR 140

Query: 282 GAFADLHAITHLAIGGNPL 300
           G F +   +T L++  N L
Sbjct: 141 GIFHNTPKLTTLSMSNNNL 159

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 91.5 bits (227), Expect = 2e-19
 Identities = 18/79 (22%), Positives = 33/79 (41%)

Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPE 281
            +  N I +L    F  +  L+ L+L  N L  + R        L  +S+  N++  I +
Sbjct: 105 YMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIED 164

Query: 282 GAFADLHAITHLAIGGNPL 300
             F    ++ +L +  N L
Sbjct: 165 DTFQATTSLQNLQLSSNRL 183

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 90.4 bits (224), Expect = 3e-19
 Identities = 16/79 (20%), Positives = 34/79 (43%)

Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPE 281
              N+ +  L         ++  L L+  +++ ID  A A   +++ + +  N I  +P 
Sbjct: 57  TFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPP 116

Query: 282 GAFADLHAITHLAIGGNPL 300
             F ++  +T L +  N L
Sbjct: 117 HVFQNVPLLTVLVLERNDL 135

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 83.4 bits (206), Expect = 5e-17
 Identities = 20/79 (25%), Positives = 31/79 (39%), Gaps = 3/79 (3%)

Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPE 281
            L  N +  L    F    KL+ L +S N L+ I+ D      SL+ + L  N ++ +  
Sbjct: 129 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDL 188

Query: 282 GAFADLHAITHLAIGGNPL 300
                L    H  +  N L
Sbjct: 189 SLIPSLF---HANVSYNLL 204

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 81.9 bits (202), Expect = 2e-16
 Identities = 16/90 (17%), Positives = 33/90 (36%), Gaps = 2/90 (2%)

Query: 213 NYPVSTMYRD--LSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIIS 270
           N     ++ D  +          F    L+    +    + ++ +    L   + + +++
Sbjct: 22  NLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLN 81

Query: 271 LHGNDISMIPEGAFADLHAITHLAIGGNPL 300
           L+   I  I   AFA  H I  L +G N +
Sbjct: 82  LNDLQIEEIDTYAFAYAHTIQKLYMGFNAI 111

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 64.9 bits (158), Expect = 4e-11
 Identities = 18/79 (22%), Positives = 33/79 (41%), Gaps = 11/79 (13%)

Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPE 281
            LS+N++   ++   S +  L    +SYN L       LA   ++  +    N I+++  
Sbjct: 177 QLSSNRL---THVDLSLIPSLFHANVSYNLLS-----TLAIPIAVEELDASHNSINVVRG 228

Query: 282 GAFADLHAITHLAIGGNPL 300
               +L   T L +  N L
Sbjct: 229 PVNVEL---TILKLQHNNL 244

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 64.2 bits (156), Expect = 6e-11
 Identities = 12/79 (15%), Positives = 29/79 (36%), Gaps = 10/79 (12%)

Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPE 281
           ++S N +      T +    + +L  S+N +  +       L  L+   L  N+++    
Sbjct: 198 NVSYNLLS-----TLAIPIAVEELDASHNSINVVRGPVNVELTILK---LQHNNLTDTA- 248

Query: 282 GAFADLHAITHLAIGGNPL 300
               +   +  + +  N L
Sbjct: 249 -WLLNYPGLVEVDLSYNEL 266

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 63.4 bits (154), Expect = 1e-10
 Identities = 15/80 (18%), Positives = 29/80 (36%), Gaps = 2/80 (2%)

Query: 84  IDAACPSGCSCDGTRVDCSQRGLKEIPKDIPLYT-TELILNDNEIGKIKSDGLFGRLPNL 142
           ID+     C      +D   + +    +DI L     +   ++ + K+    L      +
Sbjct: 19  IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKL-PAALLDSFRQV 77

Query: 143 IKLDLRRNQVTGIEDNAFEG 162
             L+L   Q+  I+  AF  
Sbjct: 78  ELLNLNDLQIEEIDTYAFAY 97

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 54.9 bits (132), Expect = 5e-08
 Identities = 14/60 (23%), Positives = 27/60 (45%), Gaps = 4/60 (6%)

Query: 106 LKEIPKDIPLYTT---ELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEG 162
           ++ +P  +         L+L  N++  +   G+F   P L  L +  N +  IED+ F+ 
Sbjct: 111 IRYLPPHVFQNVPLLTVLVLERNDLSSL-PRGIFHNTPKLTTLSMSNNNLERIEDDTFQA 169

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 53.0 bits (127), Expect = 2e-07
 Identities = 14/60 (23%), Positives = 25/60 (41%), Gaps = 4/60 (6%)

Query: 106 LKEIPKDI--PLYT-TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEG 162
           ++EI        +T  +L +  N I  +    +F  +P L  L L RN ++ +    F  
Sbjct: 87  IEEIDTYAFAYAHTIQKLYMGFNAIRYL-PPHVFQNVPLLTVLVLERNDLSSLPRGIFHN 145

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 46.5 bits (110), Expect = 2e-05
 Identities = 10/47 (21%), Positives = 21/47 (44%), Gaps = 2/47 (4%)

Query: 118 TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGEN 164
             L +++N +  +  +     +P L  LDL  N +  +E N  + + 
Sbjct: 281 ERLYISNNRLVAL--NLYGQPIPTLKVLDLSHNHLLHVERNQPQFDR 325

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 41.8 bits (98), Expect = 5e-04
 Identities = 10/45 (22%), Positives = 22/45 (48%), Gaps = 2/45 (4%)

Query: 118 TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEG 162
            E+ L+ NE+ KI     F ++  L +L +  N++  + +   + 
Sbjct: 257 VEVDLSYNELEKI-MYHPFVKMQRLERLYISNNRLVAL-NLYGQP 299

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 41.1 bits (96), Expect = 9e-04
 Identities = 10/59 (16%), Positives = 22/59 (37%), Gaps = 4/59 (6%)

Query: 106 LKEIPKDI-PLYT-TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEG 162
           L  +     P+ T   L L+ N +  ++ +    +   L  L L  N +  ++ +    
Sbjct: 290 LVALNLYGQPIPTLKVLDLSHNHLLHVERN--QPQFDRLENLYLDHNSIVTLKLSTHHT 346

>1aut_L Activated protein C; serine proteinase, plasma calcium binding, glycoprotein, HYD hydrolase inhibitor complex, blood clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 3f6u_L* Length = 114

 Score = 92.5 bits (230), Expect = 1e-22
 Identities = 24/103 (23%), Positives = 43/103 (41%), Gaps = 1/103 (0%)

Query: 429 GDRCEIN-IDDCLSHKCENNATCVDLIQAYECRCAPGFQGEFCQTKTPFCAGEYNPCRNG 487
           GD+C +  ++   +  C  + TC+D I ++ C C  G++G FCQ +  F     +     
Sbjct: 6   GDQCLVLPLEHPCASLCCGHGTCIDGIGSFSCDCRSGWEGRFCQREVSFLNCSLDNGGCT 65

Query: 488 ARCLDHFSHYTCECTPGFSGVNCTVNVDDCVNHMCQNGGTCVD 530
             CL+      C C PG+   +  +     V   C      ++
Sbjct: 66  HYCLEEVGWRRCSCAPGYKLGDDLLQCHPAVKFPCGRPWKRME 108

>1aut_L Activated protein C; serine proteinase, plasma calcium binding, glycoprotein, HYD hydrolase inhibitor complex, blood clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 3f6u_L* Length = 114

 Score = 73.2 bits (180), Expect = 6e-16
 Identities = 21/97 (21%), Positives = 32/97 (32%), Gaps = 4/97 (4%)

Query: 358 CNACYKSPCTNQGVCEPLPERQYQCRCTPGYHGQHCEFMIDA--CYGNPCRNSGTCKLLE 415
                 S C   G C       + C C  G+ G+ C+  +    C  +    +  C L E
Sbjct: 14  LEHPCASLCCGHGTCIDGI-GSFSCDCRSGWEGRFCQREVSFLNCSLDNGGCTHYC-LEE 71

Query: 416 EGRFNCECAPGYTGDRCEINIDDCLSHKCENNATCVD 452
            G   C CAPGY      +     +   C      ++
Sbjct: 72  VGWRRCSCAPGYKLGDDLLQCHPAVKFPCGRPWKRME 108

>1aut_L Activated protein C; serine proteinase, plasma calcium binding, glycoprotein, HYD hydrolase inhibitor complex, blood clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 3f6u_L* Length = 114

 Score = 64.7 bits (158), Expect = 6e-13
 Identities = 14/78 (17%), Positives = 27/78 (34%), Gaps = 2/78 (2%)

Query: 475 PFCAGEYNPCRNGARCLDHFSHYTCECTPGFSGVNCT--VNVDDCVNHMCQNGGTCVDGI 532
           P      + C     C+D    ++C+C  G+ G  C   V+  +C          C++ +
Sbjct: 13  PLEHPCASLCCGHGTCIDGIGSFSCDCRSGWEGRFCQREVSFLNCSLDNGGCTHYCLEEV 72

Query: 533 NDYTCKCEGDFVGKFCEI 550
               C C   +      +
Sbjct: 73  GWRRCSCAPGYKLGDDLL 90

>1aut_L Activated protein C; serine proteinase, plasma calcium binding, glycoprotein, HYD hydrolase inhibitor complex, blood clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 3f6u_L* Length = 114

 Score = 55.9 bits (135), Expect = 8e-10
 Identities = 24/96 (25%), Positives = 38/96 (39%), Gaps = 11/96 (11%)

Query: 502 TPGFSGVNCTVN-VDDCVNHMCQNGGTCVDGINDYTCKCEGDFVGKFCEIAPFVAMMYPQ 560
           +    G  C V  ++     +C   GTC+DGI  ++C C   + G+FC+    V+ +   
Sbjct: 1   SKHVDGDQCLVLPLEHPCASLCCGHGTCIDGIGSFSCDCRSGWEGRFCQRE--VSFLNCS 58

Query: 561 TSPCQ-HHDCKNGICFQPQGSNDYLCKCAPGYSGKE 595
                  H C   +           C CAPGY   +
Sbjct: 59  LDNGGCTHYCLEEV-------GWRRCSCAPGYKLGD 87

>1aut_L Activated protein C; serine proteinase, plasma calcium binding, glycoprotein, HYD hydrolase inhibitor complex, blood clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 3f6u_L* Length = 114

 Score = 45.9 bits (109), Expect = 2e-06
 Identities = 20/71 (28%), Positives = 29/71 (40%), Gaps = 10/71 (14%)

Query: 1  NGGTCVDGINDYTCKCEGDFVGKFCEIAPFVAMMYPQTSPCQ-HHDCKNGICFQPQGSND 59
            GTC+DGI  ++C C   + G+FC+    V+ +          H C   +         
Sbjct: 24 GHGTCIDGIGSFSCDCRSGWEGRFCQRE--VSFLNCSLDNGGCTHYCLEEV-------GW 74

Query: 60 YLCKCAPGYSG 70
            C CAPGY  
Sbjct: 75 RRCSCAPGYKL 85

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =   99 bits (249), Expect = 2e-22
 Identities = 25/128 (19%), Positives = 46/128 (35%), Gaps = 5/128 (3%)

Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPE 281
           +L  N I  +        +KL  L LS NKL  +          +  ISL  N + +I +
Sbjct: 175 NLQYNFIYDVKGQVV--FAKLKTLDLSSNKLAFMG-PEFQSAAGVTWISLRNNKLVLIEK 231

Query: 282 GAFADLHAITHLAIGGNPLYCDCGLAWLSEWVKRDYVEP-GIARCTEPASMRDKLLLTAP 340
            A      + H  + GN  +C     + S+  +   V    + + T        +     
Sbjct: 232 -ALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGH 290

Query: 341 ASSFQCKE 348
             ++ C++
Sbjct: 291 YGAYCCED 298

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 81.4 bits (201), Expect = 2e-16
 Identities = 14/79 (17%), Positives = 29/79 (36%), Gaps = 2/79 (2%)

Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPE 281
            ++++ +             + +L LS N L  I    LA    L +++L  N +    +
Sbjct: 16  KVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD 75

Query: 282 GAFADLHAITHLAIGGNPL 300
                L  +  L +  N +
Sbjct: 76  --LESLSTLRTLDLNNNYV 92

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 78.4 bits (193), Expect = 1e-15
 Identities = 23/207 (11%), Positives = 53/207 (25%), Gaps = 27/207 (13%)

Query: 106 LKEIPKDIPLYT-TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGEN 164
           + ++   +       L L+ N++  +  +  F     +  + LR N++  IE  A     
Sbjct: 181 IYDVKGQVVFAKLKTLDLSSNKLAFMGPE--FQSAAGVTWISLRNNKLVLIE-KALRFSQ 237

Query: 165 -----DQGCLGDNYCPPKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTM 219
                D   L  N     C    R  F   +  +      +    ++          +  
Sbjct: 238 NLEHFD---LRGN--GFHCGTL-RDFFSKNQRVQ-----TVAKQTVKKLTGQNEEECTVP 286

Query: 220 Y-RDLSNNQI-----GFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHG 273
                           F          + + L    ++ + ++ +     +  R I    
Sbjct: 287 TLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQAR-QREIDALK 345

Query: 274 NDISMIPEGAFADLHAITHLAIGGNPL 300
                + +       A   L      L
Sbjct: 346 EQYRTVIDQVTLRKQAKITLEQKKKAL 372

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 76.8 bits (189), Expect = 5e-15
 Identities = 14/79 (17%), Positives = 29/79 (36%), Gaps = 8/79 (10%)

Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPE 281
           DL+NN +             +  L  + N +  +      G K++    L  N I+M+ +
Sbjct: 86  DLNNNYVQ-----ELLVGPSIETLHAANNNISRVSCSRGQGKKNIY---LANNKITMLRD 137

Query: 282 GAFADLHAITHLAIGGNPL 300
                   + +L +  N +
Sbjct: 138 LDEGCRSRVQYLDLKLNEI 156

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 73.0 bits (179), Expect = 8e-14
 Identities = 14/80 (17%), Positives = 28/80 (35%), Gaps = 4/80 (5%)

Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPE 281
             +NN I  +S            + L+ NK+  +          ++ + L  N+I  +  
Sbjct: 105 HAANNNISRVSCSRGQ---GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNF 161

Query: 282 GAF-ADLHAITHLAIGGNPL 300
               A    + HL +  N +
Sbjct: 162 AELAASSDTLEHLNLQYNFI 181

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 72.2 bits (177), Expect = 2e-13
 Identities = 22/79 (27%), Positives = 33/79 (41%), Gaps = 7/79 (8%)

Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPE 281
           DLS N +  +S    +P +KL  L LS N L       L  L +LR + L+ N +  +  
Sbjct: 40  DLSGNPLSQISAADLAPFTKLELLNLSSNVLYETL--DLESLSTLRTLDLNNNYVQELLV 97

Query: 282 GAFADLHAITHLAIGGNPL 300
                  +I  L    N +
Sbjct: 98  -----GPSIETLHAANNNI 111

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 71.0 bits (174), Expect = 4e-13
 Identities = 21/222 (9%), Positives = 51/222 (22%), Gaps = 55/222 (24%)

Query: 106 LKEIPKDI-PLYT-TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQ------------ 151
           L  +  +       T + L +N++  I+         NL   DLR N             
Sbjct: 203 LAFMGPEFQSAAGVTWISLRNNKLVLIEKA--LRFSQNLEHFDLRGNGFHCGTLRDFFSK 260

Query: 152 ---VTGIEDNAFE---GENDQGC-------LGDNYCPPKCTCTVRVLFYDGRAGECYIAV 198
              V  +     +   G+N++ C        G   C       +   F D         +
Sbjct: 261 NQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCED-----LPAPFADR-------LI 308

Query: 199 ELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRD 258
            L      +                  ++   L     +  ++  ++     + + +   
Sbjct: 309 ALKRKEHALL-------------SGQGSETERLECEREN-QARQREIDALKEQYRTVIDQ 354

Query: 259 ALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIGGNPL 300
                ++   +      +             +          
Sbjct: 355 VTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQ 396

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 70.3 bits (172), Expect = 6e-13
 Identities = 10/62 (16%), Positives = 23/62 (37%)

Query: 239 LSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIGGN 298
            ++     ++ + L+           +++ + L GN +S I     A    +  L +  N
Sbjct: 9   GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN 68

Query: 299 PL 300
            L
Sbjct: 69  VL 70

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 56.4 bits (136), Expect = 1e-08
 Identities = 10/58 (17%), Positives = 21/58 (36%), Gaps = 2/58 (3%)

Query: 105 GLKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEG 162
            + EI ++         + D+ + +     L     N+ +LDL  N ++ I       
Sbjct: 1   AIHEIKQNGNR-YKIEKVTDSSLKQA-LASLRQSAWNVKELDLSGNPLSQISAADLAP 56

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 53.7 bits (129), Expect = 9e-08
 Identities = 9/57 (15%), Positives = 20/57 (35%), Gaps = 1/57 (1%)

Query: 106 LKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEG 162
           +  +          + L +N+I  +  D   G    +  LDL+ N++  +       
Sbjct: 111 ISRVSCSRGQGKKNIYLANNKITML-RDLDEGCRSRVQYLDLKLNEIDTVNFAELAA 166

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 52.5 bits (126), Expect = 2e-07
 Identities = 10/43 (23%), Positives = 16/43 (37%)

Query: 118 TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAF 160
             L L  NEI  +    L      L  L+L+ N +  ++    
Sbjct: 147 QYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVV 189

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 45.6 bits (108), Expect = 4e-05
 Identities = 13/55 (23%), Positives = 21/55 (38%), Gaps = 4/55 (7%)

Query: 106 LKEIPKDI--PLYT-TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIED 157
           LK+    +    +   EL L+ N + +I S         L  L+L  N +    D
Sbjct: 22  LKQALASLRQSAWNVKELDLSGNPLSQI-SAADLAPFTKLELLNLSSNVLYETLD 75

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 43.3 bits (102), Expect = 2e-04
 Identities = 6/44 (13%), Positives = 13/44 (29%)

Query: 257 RDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIGGNPL 300
            +        +I  +  + +             +  L + GNPL
Sbjct: 3   HEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPL 46

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 42.1 bits (99), Expect = 5e-04
 Identities = 10/38 (26%), Positives = 14/38 (36%), Gaps = 3/38 (7%)

Query: 118 TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGI 155
             L L+ N + +         L  L  LDL  N V  +
Sbjct: 61  ELLNLSSNVLYETLD---LESLSTLRTLDLNNNYVQEL 95

>2gy5_A Angiopoietin-1 receptor; ligand-binding domain, transferase; HET: NAG NDG; 2.90A {Homo sapiens} PDB: 2gy7_B* Length = 423

 Score = 96.7 bits (240), Expect = 1e-21
 Identities = 33/200 (16%), Positives = 52/200 (26%), Gaps = 23/200 (11%)

Query: 361 CYKSPCTNQGVCEPLPERQYQCRCTPGYHGQHCEFMIDACYG-----NPCRNSGTCKLLE 415
              + C N GVC        +C C PG+ G+ CE   +           C     CK   
Sbjct: 200 HLCTACMNNGVCHEDT---GECICPPGFMGRTCEKACELHTFGRTCKERCSGQEGCKSYV 256

Query: 416 E---GRFNCECAPGYTGDRCEINIDDCLSHK-------CENNATCVDLIQAYECRCAPGF 465
                 + C CA G+ G +C                  C N   C        C C+PG+
Sbjct: 257 FCLPDPYGCSCATGWKGLQCNEACHPGFYGPDCKLRCSCNNGEMCDR---FQGCLCSPGW 313

Query: 466 QGEFCQTKTPFCAGEYNPCRNGARCLDHFSHYTCECT-PGFSGVNCTVNVDDCVNHMCQN 524
           QG  C+ +                   +   +   C   G+             +    +
Sbjct: 314 QGLQCEREGIPR-MTPKIVDLPDHIEVNSGKFNPICKASGWPLPTNEEMTLVKPDGTVLH 372

Query: 525 GGTCVDGINDYTCKCEGDFV 544
                   +          +
Sbjct: 373 PKDFNHTDHFSVAIFTIHRI 392

>2gy5_A Angiopoietin-1 receptor; ligand-binding domain, transferase; HET: NAG NDG; 2.90A {Homo sapiens} PDB: 2gy7_B* Length = 423

 Score = 87.1 bits (215), Expect = 2e-18
 Identities = 38/227 (16%), Positives = 49/227 (21%), Gaps = 32/227 (14%)

Query: 381 QCRCTPGYHGQHCEFMIDACYGNPCRNSGTCKLLEEGRFNCECAPGYTGDRCEINIDDCL 440
           +       H  H +      Y                     C     G  C       L
Sbjct: 147 EVPDILEVHLPHAQPQDAGVYSARYIGGNLFTSAFTRLIVRRCEAQKWGPECN-----HL 201

Query: 441 SHKCENNATCVDLIQAYECRCAPGFQGEFCQTKTPFCAGEYN---PCRNGARCLDHFS-- 495
              C NN  C +     EC C PGF G  C+               C     C  +    
Sbjct: 202 CTACMNNGVCHE--DTGECICPPGFMGRTCEKACELHTFGRTCKERCSGQEGCKSYVFCL 259

Query: 496 --HYTCECTPGFSGVNCTVNVDDC-------VNHMCQNGGTCVDGINDYTCKCEGDFVGK 546
              Y C C  G+ G+ C              +   C NG  C        C C   + G 
Sbjct: 260 PDPYGCSCATGWKGLQCNEACHPGFYGPDCKLRCSCNNGEMCD---RFQGCLCSPGWQGL 316

Query: 547 FCEIAPFVAMMYPQTSPCQHHDCKNGICFQPQGSNDYLCKCAPGYSG 593
            CE                          +           A G+  
Sbjct: 317 QCER--------EGIPRMTPKIVDLPDHIEVNSGKFNPICKASGWPL 355

>2gy5_A Angiopoietin-1 receptor; ligand-binding domain, transferase; HET: NAG NDG; 2.90A {Homo sapiens} PDB: 2gy7_B* Length = 423

 Score = 79.0 bits (194), Expect = 7e-16
 Identities = 30/163 (18%), Positives = 47/163 (28%), Gaps = 19/163 (11%)

Query: 364 SPCTNQGVCEPLPERQYQCRCTPGYHGQHCEFMIDACYGNP-------CRNSGTCKLLEE 416
             C +   C P P   Y C C  G+ G  C       +  P       C N   C    +
Sbjct: 250 EGCKSYVFCLPDP---YGCSCATGWKGLQCNEACHPGFYGPDCKLRCSCNNGEMC----D 302

Query: 417 GRFNCECAPGYTGDRCEI-NIDDCLSHKCENNATCVDLIQAYECRC-APGFQGEFCQTKT 474
               C C+PG+ G +CE   I        +           +   C A G+     +  T
Sbjct: 303 RFQGCLCSPGWQGLQCEREGIPRMTPKIVDLPDHIEVNSGKFNPICKASGWPLPTNEEMT 362

Query: 475 PFCAGEYNPCRNGARCLDHFSHYTCECTPGFSGVNCTVNVDDC 517
                  +      +  +H  H++         +     V  C
Sbjct: 363 LVKP---DGTVLHPKDFNHTDHFSVAIFTIHRILPPDSGVWVC 402

>2gy5_A Angiopoietin-1 receptor; ligand-binding domain, transferase; HET: NAG NDG; 2.90A {Homo sapiens} PDB: 2gy7_B* Length = 423

 Score = 55.1 bits (132), Expect = 3e-08
 Identities = 30/139 (21%), Positives = 42/139 (30%), Gaps = 14/139 (10%)

Query: 460 RCAPGFQGEFCQTKTPFCAGEYNPCRNGARCLDHFSHYTC--ECTPGFSGVNCTVNVDDC 517
              P           P  AG Y+    G               C     G  C     + 
Sbjct: 146 HEVPDILEVHLPHAQPQDAGVYSARYIGGNLFTSAFTRLIVRRCEAQKWGPEC-----NH 200

Query: 518 VNHMCQNGGTCVDGINDYTCKCEGDFVGKFCEIA-PFVAMMYPQTSPCQHHD-CKNGICF 575
           +   C N G C +  +   C C   F+G+ CE A             C   + CK+ +  
Sbjct: 201 LCTACMNNGVCHE--DTGECICPPGFMGRTCEKACELHTFGRTCKERCSGQEGCKSYVFC 258

Query: 576 QPQGSNDYLCKCAPGYSGK 594
            P   + Y C CA G+ G 
Sbjct: 259 LP---DPYGCSCATGWKGL 274

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 94.3 bits (235), Expect = 2e-21
 Identities = 24/128 (18%), Positives = 47/128 (36%), Gaps = 5/128 (3%)

Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPE 281
           +L  N I  +        +KL  L LS NKL  +          +  ISL  N + +I +
Sbjct: 175 NLQYNFIYDVKGQVV--FAKLKTLDLSSNKLAFMG-PEFQSAAGVTWISLRNNKLVLIEK 231

Query: 282 GAFADLHAITHLAIGGNPLYCDCGLAWLSEWVK-RDYVEPGIARCTEPASMRDKLLLTAP 340
            A      + H  + GN  +C     + S+  + +   +  + + T        +     
Sbjct: 232 -ALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGH 290

Query: 341 ASSFQCKE 348
             ++ C++
Sbjct: 291 YGAYCCED 298

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 78.5 bits (194), Expect = 5e-16
 Identities = 14/79 (17%), Positives = 29/79 (36%), Gaps = 2/79 (2%)

Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPE 281
            ++++ +             + +L LS N L  I    LA    L +++L  N +    +
Sbjct: 16  KVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD 75

Query: 282 GAFADLHAITHLAIGGNPL 300
                L  +  L +  N +
Sbjct: 76  --LESLSTLRTLDLNNNYV 92

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 74.6 bits (184), Expect = 1e-14
 Identities = 14/79 (17%), Positives = 29/79 (36%), Gaps = 8/79 (10%)

Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPE 281
           DL+NN +             +  L  + N +  +      G K++    L  N I+M+ +
Sbjct: 86  DLNNNYVQ-----ELLVGPSIETLHAANNNISRVSCSRGQGKKNI---YLANNKITMLRD 137

Query: 282 GAFADLHAITHLAIGGNPL 300
                   + +L +  N +
Sbjct: 138 LDEGCRSRVQYLDLKLNEI 156

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 70.8 bits (174), Expect = 1e-13
 Identities = 22/79 (27%), Positives = 33/79 (41%), Gaps = 7/79 (8%)

Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPE 281
           DLS N +  +S    +P +KL  L LS N L       L  L +LR + L+ N +  +  
Sbjct: 40  DLSGNPLSQISAADLAPFTKLELLNLSSNVLYETL--DLESLSTLRTLDLNNNYVQELLV 97

Query: 282 GAFADLHAITHLAIGGNPL 300
                  +I  L    N +
Sbjct: 98  -----GPSIETLHAANNNI 111

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 69.2 bits (170), Expect = 5e-13
 Identities = 14/80 (17%), Positives = 28/80 (35%), Gaps = 4/80 (5%)

Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPE 281
             +NN I  +S            + L+ NK+  +          ++ + L  N+I  +  
Sbjct: 105 HAANNNISRVSCSRGQ---GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNF 161

Query: 282 GAF-ADLHAITHLAIGGNPL 300
               A    + HL +  N +
Sbjct: 162 AELAASSDTLEHLNLQYNFI 181

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 68.5 bits (168), Expect = 8e-13
 Identities = 10/65 (15%), Positives = 23/65 (35%)

Query: 236 FSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAI 295
               ++     ++ + L+           +++ + L GN +S I     A    +  L +
Sbjct: 6   KQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNL 65

Query: 296 GGNPL 300
             N L
Sbjct: 66  SSNVL 70

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 53.1 bits (128), Expect = 9e-08
 Identities = 10/58 (17%), Positives = 21/58 (36%), Gaps = 2/58 (3%)

Query: 105 GLKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEG 162
            + EI ++         + D+ + +     L     N+ +LDL  N ++ I       
Sbjct: 1   AIHEIKQNGN-RYKIEKVTDSSLKQA-LASLRQSAWNVKELDLSGNPLSQISAADLAP 56

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 52.7 bits (127), Expect = 1e-07
 Identities = 9/57 (15%), Positives = 20/57 (35%), Gaps = 1/57 (1%)

Query: 106 LKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEG 162
           +  +          + L +N+I  +  D   G    +  LDL+ N++  +       
Sbjct: 111 ISRVSCSRGQGKKNIYLANNKITML-RDLDEGCRSRVQYLDLKLNEIDTVNFAELAA 166

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 51.5 bits (124), Expect = 3e-07
 Identities = 10/43 (23%), Positives = 16/43 (37%)

Query: 118 TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAF 160
             L L  NEI  +    L      L  L+L+ N +  ++    
Sbjct: 147 QYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVV 189

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 47.7 bits (114), Expect = 6e-06
 Identities = 9/53 (16%), Positives = 22/53 (41%), Gaps = 3/53 (5%)

Query: 106 LKEIPKDIPLYT-TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIED 157
           + ++   +       L L+ N++  +  +  F     +  + LR N++  IE 
Sbjct: 181 IYDVKGQVVFAKLKTLDLSSNKLAFMGPE--FQSAAGVTWISLRNNKLVLIEK 231

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 44.6 bits (106), Expect = 5e-05
 Identities = 13/55 (23%), Positives = 21/55 (38%), Gaps = 4/55 (7%)

Query: 106 LKEIPKDI--PLYT-TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIED 157
           LK+    +    +   EL L+ N + +I S         L  L+L  N +    D
Sbjct: 22  LKQALASLRQSAWNVKELDLSGNPLSQI-SAADLAPFTKLELLNLSSNVLYETLD 75

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 43.4 bits (103), Expect = 1e-04
 Identities = 6/44 (13%), Positives = 13/44 (29%)

Query: 257 RDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIGGNPL 300
            +        +I  +  + +             +  L + GNPL
Sbjct: 3   HEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPL 46

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 40.7 bits (96), Expect = 8e-04
 Identities = 10/39 (25%), Positives = 14/39 (35%), Gaps = 3/39 (7%)

Query: 118 TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIE 156
             L L+ N + +         L  L  LDL  N V  + 
Sbjct: 61  ELLNLSSNVLYETLD---LESLSTLRTLDLNNNYVQELL 96

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 94.7 bits (236), Expect = 4e-21
 Identities = 39/229 (17%), Positives = 73/229 (31%), Gaps = 60/229 (26%)

Query: 106 LKEIPKDIPLYTT---ELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEG 162
           ++ +P  +         L+L  N++  +   G+F   P L  L +  N +  IED+ F  
Sbjct: 105 IRYLPPHVFQNVPLLTVLVLERNDLSSL-PRGIFHNTPKLTTLSMSNNNLERIEDDTF-- 161

Query: 163 ENDQGC-------LGDNYCPPKCTCTVRVLFYDGRAGECYIAVELFSS--RIRVSY-YVG 212
              Q         L  N          R+          ++ + L  S     VSY  + 
Sbjct: 162 ---QATTSLQNLQLSSN----------RLT---------HVDLSLIPSLFHANVSYNLLS 199

Query: 213 NYPVSTMYRDL--SNNQIGFLSNFTFS-------------------PLSKLSQLILSYNK 251
              +     +L  S+N I  +                             L ++ LSYN+
Sbjct: 200 TLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNE 259

Query: 252 LQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIGGNPL 300
           L+ I       ++ L  + +  N +  +       +  +  L +  N L
Sbjct: 260 LEKIMYHPFVKMQRLERLYISNNRLVALN-LYGQPIPTLKVLDLSHNHL 307

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 93.2 bits (232), Expect = 1e-20
 Identities = 28/127 (22%), Positives = 44/127 (34%), Gaps = 15/127 (11%)

Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPE 281
            +SNN++  L+     P+  L  L LS+N L  ++R+       L  + L  N I  +  
Sbjct: 278 YISNNRLVALNL-YGQPIPTLKVLDLSHNHLLHVERNQP-QFDRLENLYLDHNSIVTLKL 335

Query: 282 GAFADLHAITHLAIGGNPLYCDCGLAWLSEWVKRDYVEPGIARCTEPASMRDKLLLTAPA 341
                L    +L +  N   C+   A       R  V+     C     +   L      
Sbjct: 336 STHHTL---KNLTLSHNDWDCNSLRALFRNV-ARPAVDDADQHCKIDYQLEHGL------ 385

Query: 342 SSFQCKE 348
               CKE
Sbjct: 386 ---CCKE 389

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 90.9 bits (226), Expect = 8e-20
 Identities = 18/79 (22%), Positives = 40/79 (50%)

Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPE 281
           +L++ QI  +  + F+    + +L + +N ++ +       +  L ++ L  ND+S +P 
Sbjct: 75  NLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPR 134

Query: 282 GAFADLHAITHLAIGGNPL 300
           G F +   +T L++  N L
Sbjct: 135 GIFHNTPKLTTLSMSNNNL 153

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 88.9 bits (221), Expect = 4e-19
 Identities = 18/79 (22%), Positives = 33/79 (41%)

Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPE 281
            +  N I +L    F  +  L+ L+L  N L  + R        L  +S+  N++  I +
Sbjct: 99  YMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIED 158

Query: 282 GAFADLHAITHLAIGGNPL 300
             F    ++ +L +  N L
Sbjct: 159 DTFQATTSLQNLQLSSNRL 177

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 88.6 bits (220), Expect = 4e-19
 Identities = 16/79 (20%), Positives = 34/79 (43%)

Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPE 281
              N+ +  L         ++  L L+  +++ ID  A A   +++ + +  N I  +P 
Sbjct: 51  TFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPP 110

Query: 282 GAFADLHAITHLAIGGNPL 300
             F ++  +T L +  N L
Sbjct: 111 HVFQNVPLLTVLVLERNDL 129

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 82.8 bits (205), Expect = 3e-17
 Identities = 27/213 (12%), Positives = 58/213 (27%), Gaps = 54/213 (25%)

Query: 106 LKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGEND 165
           +  +   + +  T L L  N    +         P L+++DL  N++  I  + F     
Sbjct: 217 INVVRGPVNVELTILKLQHN---NLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQR 273

Query: 166 QGCLGDNYCPPKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSN 225
                           +  L+             + ++R+          ++   + +  
Sbjct: 274 ----------------LERLY-------------ISNNRLVA--------LNLYGQPIPT 296

Query: 226 --------NQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDIS 277
                   N +  +         +L  L L +N +  +       LK+L    L  ND  
Sbjct: 297 LKVLDLSHNHLLHVERNQPQ-FDRLENLYLDHNSIVTLKLSTHHTLKNLT---LSHNDWD 352

Query: 278 MIPEGAFADLHAITHLAIGGNPLYCDCGLAWLS 310
                A      +   A+     +C        
Sbjct: 353 CNSLRAL--FRNVARPAVDDADQHCKIDYQLEH 383

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 78.9 bits (195), Expect = 7e-16
 Identities = 16/90 (17%), Positives = 34/90 (37%), Gaps = 2/90 (2%)

Query: 213 NYPVSTMYRDLSNNQIGF--LSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIIS 270
           N     ++ D+  +         F    L+    +    + ++ +    L   + + +++
Sbjct: 16  NLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLN 75

Query: 271 LHGNDISMIPEGAFADLHAITHLAIGGNPL 300
           L+   I  I   AFA  H I  L +G N +
Sbjct: 76  LNDLQIEEIDTYAFAYAHTIQKLYMGFNAI 105

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 60.1 bits (146), Expect = 8e-10
 Identities = 15/80 (18%), Positives = 29/80 (36%), Gaps = 2/80 (2%)

Query: 84  IDAACPSGCSCDGTRVDCSQRGLKEIPKDIPLYT-TELILNDNEIGKIKSDGLFGRLPNL 142
           ID+     C      +D   + +    +DI L     +   ++ + K+    L      +
Sbjct: 13  IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKL-PAALLDSFRQV 71

Query: 143 IKLDLRRNQVTGIEDNAFEG 162
             L+L   Q+  I+  AF  
Sbjct: 72  ELLNLNDLQIEEIDTYAFAY 91

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 50.8 bits (122), Expect = 7e-07
 Identities = 13/69 (18%), Positives = 26/69 (37%), Gaps = 4/69 (5%)

Query: 97  TRVDCSQRGLKEIPKDI--PLYT-TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVT 153
             V      ++++P  +         L LND +I +I     F     + KL +  N + 
Sbjct: 48  KIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEI-DTYAFAYAHTIQKLYMGFNAIR 106

Query: 154 GIEDNAFEG 162
            +  + F+ 
Sbjct: 107 YLPPHVFQN 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 94.0 bits (233), Expect = 5e-21
 Identities = 29/147 (19%), Positives = 51/147 (34%), Gaps = 18/147 (12%)

Query: 174 CPPKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDL---SNNQIGF 230
           CP  C                + +  L  +R      + + P +    +L   +   +  
Sbjct: 1   CPDACCP--------------HGSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQH 46

Query: 231 LSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAI 290
           L       L +L  L +  + L+ +  DA      L  ++L  N +  +       L  +
Sbjct: 47  LELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-L 105

Query: 291 THLAIGGNPLYCDCGLAWLSEWVKRDY 317
             L + GNPL+C C L WL  W +   
Sbjct: 106 QELVLSGNPLHCSCALRWLQRWEEEGL 132

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 69.0 bits (168), Expect = 8e-13
 Identities = 15/78 (19%), Positives = 31/78 (39%), Gaps = 3/78 (3%)

Query: 88  CPSGCSCDG-TRVDCSQRGLKEIPKDIPLYT--TELILNDNEIGKIKSDGLFGRLPNLIK 144
           CP  C   G + + C++ G  +    +P     TEL + + +  +         L  L  
Sbjct: 1   CPDACCPHGSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRN 60

Query: 145 LDLRRNQVTGIEDNAFEG 162
           L + ++ +  +  +AF  
Sbjct: 61  LTIVKSGLRFVAPDAFHF 78

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 94.2 bits (234), Expect = 2e-20
 Identities = 44/213 (20%), Positives = 75/213 (35%), Gaps = 34/213 (15%)

Query: 106 LKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGEND 165
           +  +    P   T L    N             L  L  L L+RN +      A   +N 
Sbjct: 344 IHMVCPPSPSSFTFLNFTQNVFTDSVF-QGCSTLKRLQTLILQRNGLKNFFKVALMTKNM 402

Query: 166 QG-CLGDNYCPPKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLS 224
                 D             L        C                      S +  +LS
Sbjct: 403 SSLETLDVSL--------NSLNSHAYDRTCAW------------------AESILVLNLS 436

Query: 225 NNQIGFLSNFTFSPL-SKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGA 283
           +N    L+   F  L  K+  L L  N++  I +D    L++L+ +++  N +  +P+G 
Sbjct: 437 SNM---LTGSVFRCLPPKVKVLDLHNNRIMSIPKDVT-HLQALQELNVASNQLKSVPDGV 492

Query: 284 FADLHAITHLAIGGNPLYCDC-GLAWLSEWVKR 315
           F  L ++ ++ +  NP  C C G+ +LSEW+ +
Sbjct: 493 FDRLTSLQYIWLHDNPWDCTCPGIRYLSEWINK 525

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 75.3 bits (185), Expect = 2e-14
 Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 2/74 (2%)

Query: 89  PSGCSCD-GTRVDCSQRGLKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDL 147
            +  S +  + VD S R L  +PKD+P  T  L L+ N I ++        L  L  L L
Sbjct: 25  MTPFSNELESMVDYSNRNLTHVPKDLPPRTKALSLSQNSISEL-RMPDISFLSELRVLRL 83

Query: 148 RRNQVTGIEDNAFE 161
             N++  ++ + F 
Sbjct: 84  SHNRIRSLDFHVFL 97

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 72.2 bits (177), Expect = 2e-13
 Identities = 24/88 (27%), Positives = 35/88 (39%), Gaps = 3/88 (3%)

Query: 215 PVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGN 274
           P  T    LS N I  L     S LS+L  L LS+N+++ +D       + L  + +  N
Sbjct: 51  PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHN 110

Query: 275 DISMIPEGAFADLHAITHLAIGGNPLYC 302
            +  I     A L    HL +  N    
Sbjct: 111 RLQNISCCPMASL---RHLDLSFNDFDV 135

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 66.0 bits (161), Expect = 2e-11
 Identities = 24/80 (30%), Positives = 36/80 (45%), Gaps = 4/80 (5%)

Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPE 281
            LS+N+I  L    F     L  L +S+N+LQ I    +    SLR + L  ND  ++P 
Sbjct: 82  RLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCCPM---ASLRHLDLSFNDFDVLPV 138

Query: 282 GA-FADLHAITHLAIGGNPL 300
              F +L  +T L +     
Sbjct: 139 CKEFGNLTKLTFLGLSAAKF 158

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 62.2 bits (151), Expect = 3e-10
 Identities = 18/73 (24%), Positives = 28/73 (38%), Gaps = 4/73 (5%)

Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDAL-AGLKSLRIISLHGNDISMIP 280
           D+S+N+   L N +  P++ L  L LS+N    +        L  L  + L       + 
Sbjct: 106 DVSHNR---LQNISCCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLD 162

Query: 281 EGAFADLHAITHL 293
               A LH    L
Sbjct: 163 LLPVAHLHLSCIL 175

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 58.0 bits (140), Expect = 5e-09
 Identities = 15/91 (16%), Positives = 29/91 (31%)

Query: 210 YVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRII 269
           Y      S M   + N    F     +S  ++++  +LS +    I         S   +
Sbjct: 299 YSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFL 358

Query: 270 SLHGNDISMIPEGAFADLHAITHLAIGGNPL 300
           +   N  +       + L  +  L +  N L
Sbjct: 359 NFTQNVFTDSVFQGCSTLKRLQTLILQRNGL 389

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 48.7 bits (116), Expect = 4e-06
 Identities = 15/83 (18%), Positives = 30/83 (36%), Gaps = 2/83 (2%)

Query: 220 YRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMI 279
            + LS +   F+        S  + L  + N          + LK L+ + L  N +   
Sbjct: 333 IKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNF 392

Query: 280 PEGAF--ADLHAITHLAIGGNPL 300
            + A    ++ ++  L +  N L
Sbjct: 393 FKVALMTKNMSSLETLDVSLNSL 415

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 89.2 bits (221), Expect = 1e-18
 Identities = 27/185 (14%), Positives = 52/185 (28%), Gaps = 49/185 (26%)

Query: 118 TELIL-NDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDNYCPP 176
           T++ L N   + ++        LP L  L++  N+         +               
Sbjct: 494 TDVELYNCPNMTQLPDF--LYDLPELQSLNIACNRGISAAQLKADWTRLADDED------ 545

Query: 177 KCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQI-GFLSNFT 235
                +++                                      +  N +  F ++ +
Sbjct: 546 -TGPKIQIF------------------------------------YMGYNNLEEFPASAS 568

Query: 236 FSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAI 295
              + KL  L   +NK++ +  +A      L  + L  N I  IPE   A    +  L  
Sbjct: 569 LQKMVKLGLLDCVHNKVRHL--EAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGF 626

Query: 296 GGNPL 300
             N L
Sbjct: 627 SHNKL 631

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 87.6 bits (217), Expect = 4e-18
 Identities = 30/206 (14%), Positives = 62/206 (30%), Gaps = 58/206 (28%)

Query: 106 LKEIPKDIPLYT---TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEG 162
           ++EIP+D   +T     L  + N++  I +      +  +  +D   N++     N    
Sbjct: 607 IEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCS 666

Query: 163 ENDQGCLGDNYCPPKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRD 222
            +D   +               +                                     
Sbjct: 667 MDDYKGI-----------NASTV------------------------------------T 679

Query: 223 LSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDA-------LAGLKSLRIISLHGND 275
           LS N+I       F+  S +S +ILS N +  I  ++             L  I L  N 
Sbjct: 680 LSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNK 739

Query: 276 ISMIPEG-AFADLHAITHLAIGGNPL 300
           ++ + +      L  ++++ +  N  
Sbjct: 740 LTSLSDDFRATTLPYLSNMDVSYNCF 765

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 80.3 bits (198), Expect = 8e-16
 Identities = 28/217 (12%), Positives = 49/217 (22%), Gaps = 62/217 (28%)

Query: 106 LKEIPKDIPLYT----------TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGI 155
           +  IP++               T + L  N++  +  D     LP L  +D+  N  +  
Sbjct: 709 MTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSF 768

Query: 156 EDNAFEGENDQGCLGDNYCPPKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYP 215
                               P        L                              
Sbjct: 769 --------------------PTQPLNSSQL------------KAFGIRH----------- 785

Query: 216 VSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGND 275
                RD   N+I        +    L QL +  N ++ +D         L I+ +  N 
Sbjct: 786 ----QRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEKL---TPQLYILDIADNP 838

Query: 276 ISMIPEGAFADLH--AITHLAIGGNPLYCDCGLAWLS 310
              I   +        +  L          C    + 
Sbjct: 839 NISIDVTSVCPYIEAGMYVLLYDKTQDIRGCDALGIE 875

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 76.5 bits (188), Expect = 1e-14
 Identities = 37/219 (16%), Positives = 68/219 (31%), Gaps = 62/219 (28%)

Query: 106 LKEIPKDIPLYT----TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFE 161
           L+E P    L        L    N++  +++   FG    L  L L  NQ+  I ++   
Sbjct: 560 LEEFPASASLQKMVKLGLLDCVHNKVRHLEA---FGTNVKLTDLKLDYNQIEEIPEDFCA 616

Query: 162 GENDQGCLGDNYCPPKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYR 221
             +                 V  L                 ++++        P     +
Sbjct: 617 FTDQ----------------VEGLG-------------FSHNKLKYI------PNIFNAK 641

Query: 222 DLSN--------NQIGFLSNFTFSPLS-----KLSQLILSYNKLQCIDRDALAGLKSLRI 268
            +          N+IG         +        S + LSYN++Q    +  A    +  
Sbjct: 642 SVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPIST 701

Query: 269 ISLHGNDISMIPE-------GAFADLHAITHLAIGGNPL 300
           I L  N ++ IPE       G + + + +T + +  N L
Sbjct: 702 IILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKL 740

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 71.4 bits (175), Expect = 4e-13
 Identities = 29/226 (12%), Positives = 57/226 (25%), Gaps = 67/226 (29%)

Query: 100 DCSQRGLKEIPKDIP--------LYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQ 151
           D  Q  +   P+  P        L  T++    N I  I       RL  L  +    + 
Sbjct: 402 DLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKA--IQRLTKLQIIYFANSP 459

Query: 152 VTGIEDNAFEGENDQGCLGDNYCPPKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYV 211
            T                                           AV+   +    +   
Sbjct: 460 FTYD-------------------NI--------------------AVDWEDANSDYAKQY 480

Query: 212 GNYPVS----TMYRDL---SNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDR------- 257
            N  +S        D+   +   +  L +     L +L  L ++ N+     +       
Sbjct: 481 ENEELSWSNLKDLTDVELYNCPNMTQLPD-FLYDLPELQSLNIACNRGISAAQLKADWTR 539

Query: 258 --DALAGLKSLRIISLHGNDISMIP-EGAFADLHAITHLAIGGNPL 300
             D       ++I  +  N++   P   +   +  +  L    N +
Sbjct: 540 LADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKV 585

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 63.0 bits (153), Expect = 2e-10
 Identities = 35/209 (16%), Positives = 61/209 (29%), Gaps = 33/209 (15%)

Query: 118 TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDNYCPPK 177
           T L L          D   G+L  L  L    +  T       + E       +     +
Sbjct: 326 TGLSLAGFGAKGRVPDA-IGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIR 384

Query: 178 CTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSNF--- 234
                  L YD R        +L    I  +  +      +    L + QIG L+N    
Sbjct: 385 MHYKKMFLDYDQRLNLS----DLLQDAINRNPEMKPIKKDSR-ISLKDTQIGNLTNRITF 439

Query: 235 ---TFSPLSKLSQLILSYNKLQCIDR-------------------DALAGLKSLRIISL- 271
                  L+KL  +  + +     +                     + + LK L  + L 
Sbjct: 440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELY 499

Query: 272 HGNDISMIPEGAFADLHAITHLAIGGNPL 300
           +  +++ +P+    DL  +  L I  N  
Sbjct: 500 NCPNMTQLPD-FLYDLPELQSLNIACNRG 527

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 46.8 bits (111), Expect = 2e-05
 Identities = 10/63 (15%), Positives = 24/63 (38%), Gaps = 4/63 (6%)

Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPE 281
           D+  +Q G           +++ L L+    +    DA+  L  L+++S   +  ++   
Sbjct: 309 DMWGDQPGV----DLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGR 364

Query: 282 GAF 284
              
Sbjct: 365 LFG 367

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 44.5 bits (105), Expect = 9e-05
 Identities = 8/63 (12%), Positives = 18/63 (28%), Gaps = 2/63 (3%)

Query: 97  TRVDCSQRGLKEIPKDIPLYT--TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTG 154
                 +     +  D           +  N + +  +     ++  L  LD   N+V  
Sbjct: 528 ISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRH 587

Query: 155 IED 157
           +E 
Sbjct: 588 LEA 590

>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_B* 3k72_B* Length = 687

 Score = 87.1 bits (215), Expect = 5e-18
 Identities = 45/236 (19%), Positives = 68/236 (28%), Gaps = 41/236 (17%)

Query: 358 CNACYKSPCTNQGVCEPLPERQYQCRCTPG------YHGQHCEFMIDAC---YGNPCRNS 408
                   C+  G C        QC C          +GQ+CE     C    G  C   
Sbjct: 476 RKDNNSIICSGLGDCVC-----GQCLCHTSDVPGKLIYGQYCECDTINCERYNGQVCGGP 530

Query: 409 GTCKLLEEGRFNCECAPGYTGDRCEINID-----DCLSHKCENNATCVDLIQAYECRCAP 463
           G           C C PG+ G  C+         +    +C     C        C C  
Sbjct: 531 GRGLCFCG---KCRCHPGFEGSACQCERTTEGCLNPRRVECSGRGRCRC----NVCECHS 583

Query: 464 GFQGEFCQTKTPFCAGEYNPCRNGARCLDHFSHYTCECTPGFSGVNCTVNV-DDCVNHMC 522
           G+Q   CQ     C G  +PC     C +       +   G  G NC+       +++  
Sbjct: 584 GYQLPLCQE----CPGCPSPCGKYISCAE-----CLKFEKGPFGKNCSAACPGLQLSNNP 634

Query: 523 QNGGTCVDGINDYTCKCEGDFVGKFCEIAPFVAMMYPQTSPCQHH--DCKNGICFQ 576
             G TC       +  C   +  +  +      +   ++  C      C   + FQ
Sbjct: 635 VKGRTC---KERDSEGCWVAYTLEQQDGMDRYLIYVDESRECVAGPDGCGENLYFQ 687

>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_B* 3k72_B* Length = 687

 Score = 84.4 bits (208), Expect = 3e-17
 Identities = 51/260 (19%), Positives = 74/260 (28%), Gaps = 54/260 (20%)

Query: 358 CNACYKSPCTNQGVCEPLPERQYQCRCTPGYHGQHCEFMIDACYGNPCRNSGTCKLLEEG 417
             +  +S C  +G  E        CRC  GY G++CE              G+C+     
Sbjct: 429 DQSRDRSLCHGKGFLEC-----GICRCDTGYIGKNCECQTQGRSSQEL--EGSCRKDNNS 481

Query: 418 RF----------NCECAPG------YTGDRCEINIDDCLSHK---CENNATCVDLIQAYE 458
                        C C           G  CE +  +C  +    C      +      +
Sbjct: 482 IICSGLGDCVCGQCLCHTSDVPGKLIYGQYCECDTINCERYNGQVCGGPGRGLC--FCGK 539

Query: 459 CRCAPGFQGEFCQTKTPFC---AGEYNPCRNGARCLDHFSHYTCECTPGFSGVNCTVNVD 515
           CRC PGF+G  CQ +             C    RC        CEC  G+    C     
Sbjct: 540 CRCHPGFEGSACQCERTTEGCLNPRRVECSGRGRCRC----NVCECHSGYQLPLCQEC-- 593

Query: 516 DCVNHMCQNGGTCVDGINDYTCKCEGDFVGKFCEIAPFVAMMYPQTSPCQHHDCKNGICF 575
                 C    +C +       K E    GK C  A     +    +P +   CK     
Sbjct: 594 PGCPSPCGKYISCAE-----CLKFEKGPFGKNCSAACPGLQL--SNNPVKGRTCKERDS- 645

Query: 576 QPQGSNDYLCKCAPGYSGKE 595
                      C   Y+ ++
Sbjct: 646 ---------EGCWVAYTLEQ 656

>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_B* 3k72_B* Length = 687

 Score = 71.3 bits (174), Expect = 5e-13
 Identities = 36/251 (14%), Positives = 59/251 (23%), Gaps = 40/251 (15%)

Query: 362 YKSPCTNQGVCEPLPERQYQCRCTPGYHGQHCEFMIDACYGNPCRNSGTCKLLEEGRFNC 421
           Y S C+N       P    +  C          F +        +               
Sbjct: 360 YDSFCSNGVTHRNQP----RGDCDGVQINVPITFQVKVTATECIQEQSFVIRALGFTDIV 415

Query: 422 ECAPGYTGDRCEINIDDCLSHKCENNATCVDLIQAYECRCAPGFQGEFCQTKTPFCAGEY 481
                   + C           C              CRC  G+ G+ C+ +T   + + 
Sbjct: 416 TVQVLPQCE-CRCRDQSRDRSLCHGKGFLEC----GICRCDTGYIGKNCECQTQGRSSQE 470

Query: 482 N--PCRNGARCLDHFSHYTCEC-----------TPGFSGVNCTVNVDDCVNH-----MCQ 523
               CR     +       C C                G  C  +  +C  +        
Sbjct: 471 LEGSCRKDNNSIICSGLGDCVCGQCLCHTSDVPGKLIYGQYCECDTINCERYNGQVCGGP 530

Query: 524 NGGTCVDGINDYTCKCEGDFVGKFCEIAPFVAMMYPQTSPCQHHDCKNGICFQPQGSNDY 583
             G C  G     C+C   F G  C+          + +     + +   C         
Sbjct: 531 GRGLCFCG----KCRCHPGFEGSACQC---------ERTTEGCLNPRRVECSGRGRCRCN 577

Query: 584 LCKCAPGYSGK 594
           +C+C  GY   
Sbjct: 578 VCECHSGYQLP 588

>3zyj_B Netrin-G1; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 426

 Score = 83.7 bits (206), Expect = 3e-17
 Identities = 24/159 (15%), Positives = 43/159 (27%), Gaps = 15/159 (9%)

Query: 381 QCRCTPGYHGQHCEFMIDACYGNPCRNSGTCKLLEEGRFNCECAPGYTGDRCEINIDDCL 440
                      +    I       C    T  + +  +  CEC    TG  C     +  
Sbjct: 275 FVDELHLARYFYAISDIKVRGRCKCNLHATVCVYDNSKLTCECEHNTTGPDCGKCKKNYQ 334

Query: 441 SHKCENNATCVDLIQAYECRCAPGFQGEFCQTKTPFCAGEYNPCRNGARCLDHFSHYTCE 500
                +  + + + +     C P             C  E   C+NG  C +   +  C 
Sbjct: 335 GRPW-SPGSYLPIPKGAANACIPSISSIGTNV----CDNELLHCQNGGTCHN---NVRCL 386

Query: 501 CTPGFSGVNCTVNVDDCVNHMCQNGGTCVDGINDYTCKC 539
           C   ++G+ C    +      C+  G+C           
Sbjct: 387 CPAAYTGILC----EKL---RCEEAGSCGSDSGQGAPPH 418

>3zyj_B Netrin-G1; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 426

 Score = 75.3 bits (184), Expect = 1e-14
 Identities = 23/151 (15%), Positives = 37/151 (24%), Gaps = 16/151 (10%)

Query: 355 LSKCNACYKSPCTNQGVCEPLPERQYQCRCTPGYHGQHCEFMIDACYGNPCRNSGTCKLL 414
           +S      +  C            +  C C     G  C        G P    G+   +
Sbjct: 288 ISDIKVRGRCKCNLHATVCVYDNSKLTCECEHNTTGPDCGKCKKNYQGRPWSP-GSYLPI 346

Query: 415 EEGRFNCECAPGYTGDRCEINIDDCLSHKCENNATCVDLIQAYECRCAPGFQGEFCQTKT 474
            +G     C P  +     +  ++ L   C+N  TC +      C C   + G  C+   
Sbjct: 347 PKG-AANACIPSISSIGTNVCDNELLH--CQNGGTCHN---NVRCLCPAAYTGILCEK-- 398

Query: 475 PFCAGEYNPCRNGARCLDHFSHYTCECTPGF 505
                    C     C               
Sbjct: 399 --LR-----CEEAGSCGSDSGQGAPPHGTHH 422

>3zyj_B Netrin-G1; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 426

 Score = 68.7 bits (167), Expect = 1e-12
 Identities = 35/161 (21%), Positives = 47/161 (29%), Gaps = 28/161 (17%)

Query: 435 NIDDCLSHKCENNA-TCVDLIQAYECRCAPGFQGEFCQTKTPFCAGEYNPCRNGARCLDH 493
           +I      KC  +A  CV       C C     G  C        G   P   G+  L  
Sbjct: 290 DIKVRGRCKCNLHATVCVYDNSKLTCECEHNTTGPDCGKCKKNYQG--RPWSPGS-YLPI 346

Query: 494 FSHYTCECTPGFSGVNCTVNVDDCVNHMCQNGGTCVDGINDYTCKCEGDFVGKFCEIAPF 553
                  C P  S +   V  ++ ++  CQNGGTC    N+  C C   + G  CE    
Sbjct: 347 PKGAANACIPSISSIGTNVCDNELLH--CQNGGTC---HNNVRCLCPAAYTGILCE---- 397

Query: 554 VAMMYPQTSPCQHHDCKNGICFQPQGSNDYLCKCAPGYSGK 594
                      +  +   G C    G          G    
Sbjct: 398 ---------KLRCEE--AGSCGSDSGQ----GAPPHGTHHH 423

>3zyj_B Netrin-G1; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 426

 Score = 56.0 bits (134), Expect = 2e-08
 Identities = 21/110 (19%), Positives = 28/110 (25%), Gaps = 15/110 (13%)

Query: 358 CNACYKSPCTNQGVCEPLPERQYQCRCTPGYHGQHCEFMIDACYGNPCRNSGTCKLLEEG 417
                  P +  G   P+P+      C P           +      C+N GTC      
Sbjct: 330 KKNYQGRPWSP-GSYLPIPK-GAANACIPSISSIGTNVCDNEL--LHCQNGGTC----HN 381

Query: 418 RFNCECAPGYTGDRCEINIDDCLSHKCENNATCVDLIQAYECRCAPGFQG 467
              C C   YTG  CE         +CE   +C                 
Sbjct: 382 NVRCLCPAAYTGILCE----KL---RCEEAGSCGSDSGQGAPPHGTHHHH 424

>3zyj_B Netrin-G1; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 426

 Score = 55.2 bits (132), Expect = 3e-08
 Identities = 36/233 (15%), Positives = 54/233 (23%), Gaps = 36/233 (15%)

Query: 368 NQGVCEPLPERQYQCRCTPGYHGQHCEFMIDACYGNPCRNSGTCKLLEEGRFNCECAPGY 427
            + V +       +  CT  Y   +              NS       + RF     P  
Sbjct: 190 PKSVKDLSQHTVLEIICTEEYSTGYT------------TNSKIIHFEIKDRFAFFAGPRL 237

Query: 428 TGDRCEINIDDCLSHKCENNATCVDLIQAYECRCAPGFQGEFCQTKTPFCA------GEY 481
                     D  + K  +  T  DL              +       F A         
Sbjct: 238 RNMASLYGQLDT-TKKLRDFFTVTDLRIRLLRPAVGEIFVDELHLARYFYAISDIKVRGR 296

Query: 482 NPCRNGA-RCLDHFSHYTCECTPGFSGVNCTVNVDDCVNHMCQNGGTCVDGINDYTCKCE 540
             C   A  C+   S  TCEC    +G +C     +         G+ +         C 
Sbjct: 297 CKCNLHATVCVYDNSKLTCECEHNTTGPDCGKCKKNYQGRPWS-PGSYLPIPKGAANACI 355

Query: 541 GDFVGKFCEIAPFVAMMYPQTSPCQHHDCKNGICFQPQGSNDYLCKCAPGYSG 593
                                   +   C+NG        N+  C C   Y+G
Sbjct: 356 PSISSIGTN-----------VCDNELLHCQNG----GTCHNNVRCLCPAAYTG 393

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 77.7 bits (192), Expect = 7e-17
 Identities = 30/74 (40%), Positives = 40/74 (54%), Gaps = 1/74 (1%)

Query: 87  ACPSGCSCDGTRVDCSQRGLKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKLD 146
            CPS CSCD T V+C    L  +P  IP     L LN+N+I K++  G+F  L NL +L 
Sbjct: 5   GCPSQCSCDQTLVNCQNIRLASVPAGIPTDKQRLWLNNNQITKLEP-GVFDHLVNLQQLY 63

Query: 147 LRRNQVTGIEDNAF 160
              N++T I    F
Sbjct: 64  FNSNKLTAIPTGVF 77

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 63.8 bits (156), Expect = 5e-12
 Identities = 38/123 (30%), Positives = 53/123 (43%), Gaps = 12/123 (9%)

Query: 215 PVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGN 274
           P       L+NNQI  L    F  L  L QL  + NKL  I       L  L  + L+ N
Sbjct: 32  PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91

Query: 275 DISMIPEGAFADLHAITHLAIGGNPLYCDC-GLAWLSEWVKR-----------DYVEPGI 322
            +  IP GAF +L ++TH+ +  NP  C+C  + +L  WV                +P  
Sbjct: 92  HLKSIPRGAFDNLKSLTHIYLYNNPWDCECRDIMYLRNWVADHTSIVMRWDGKAVNDPDS 151

Query: 323 ARC 325
           A+C
Sbjct: 152 AKC 154

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 77.3 bits (191), Expect = 9e-17
 Identities = 36/74 (48%), Positives = 45/74 (60%), Gaps = 1/74 (1%)

Query: 87  ACPSGCSCDGTRVDCSQRGLKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKLD 146
           ACPS CSC GT VDCS + L  +P  IP  T  L L DN+I K++  G+F RL  L +LD
Sbjct: 2   ACPSQCSCSGTTVDCSGKSLASVPTGIPTTTQVLYLYDNQITKLEP-GVFDRLTQLTRLD 60

Query: 147 LRRNQVTGIEDNAF 160
           L  NQ+T +    F
Sbjct: 61  LDNNQLTVLPAGVF 74

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 63.8 bits (156), Expect = 4e-12
 Identities = 38/120 (31%), Positives = 60/120 (50%), Gaps = 9/120 (7%)

Query: 215 PVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGN 274
           P +T    L +NQI  L    F  L++L++L L  N+L  +       L  L  +SL+ N
Sbjct: 29  PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88

Query: 275 DISMIPEGAFADLHAITHLAIGGNPLYCDC-GLAWLSEWVKR--------DYVEPGIARC 325
            +  IP GAF +L ++TH+ +  NP  C C  + +LS W+ +          ++P  ARC
Sbjct: 89  QLKSIPRGAFDNLKSLTHIWLLNNPWDCACSDILYLSRWISQHPGLVFGYLNLDPDSARC 148

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 82.4 bits (204), Expect = 1e-16
 Identities = 34/206 (16%), Positives = 62/206 (30%), Gaps = 56/206 (27%)

Query: 106 LKEIPKDIPLYTT---ELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEG 162
           + EIP +   +T     L    N++  I +      +  +  +D   N++  ++   F+ 
Sbjct: 365 ITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDP 424

Query: 163 ENDQGCLGDNYCPPKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRD 222
            +     G N         V  +                                    +
Sbjct: 425 LDPTPFKGIN---------VSSI------------------------------------N 439

Query: 223 LSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDA-------LAGLKSLRIISLHGND 275
           LSNNQI       FS  S LS + L  N L  I +++             L  I L  N 
Sbjct: 440 LSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNK 499

Query: 276 ISMIP-EGAFADLHAITHLAIGGNPL 300
           ++ +  +     L  +  + +  N  
Sbjct: 500 LTKLSDDFRATTLPYLVGIDLSYNSF 525

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 78.5 bits (194), Expect = 2e-15
 Identities = 34/231 (14%), Positives = 62/231 (26%), Gaps = 81/231 (35%)

Query: 102 SQRGLKEIPKDIPLYT--TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNA 159
             +    +          + + L++N+I K     LF     L  ++L  N +T I  N+
Sbjct: 418 DGKNFDPLDPTPFKGINVSSINLSNNQISKF-PKELFSTGSPLSSINLMGNMLTEIPKNS 476

Query: 160 FEGENDQGCLGDNYCPPKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTM 219
            + EN+                +  +                                  
Sbjct: 477 LKDENENFK--------NTY-LLTSI---------------------------------- 493

Query: 220 YRDLSNNQI-GFLSNFTFSPLSKLSQLILSYNKLQCIDR--------------------- 257
             DL  N++     +F  + L  L  + LSYN                            
Sbjct: 494 --DLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQG 551

Query: 258 --------DALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIGGNPL 300
                   + +    SL  + +  NDI  + E    ++   + L I  NP 
Sbjct: 552 NRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKITPNI---SVLDIKDNPN 599

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 67.0 bits (164), Expect = 8e-12
 Identities = 18/81 (22%), Positives = 34/81 (41%), Gaps = 4/81 (4%)

Query: 222 DLSNNQI-GFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIP 280
           +   NQ+ G L    F    KL+ L L+YN++  I  +     + +  +S   N +  IP
Sbjct: 336 ECLYNQLEGKLP--AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIP 393

Query: 281 EGAFAD-LHAITHLAIGGNPL 300
               A  +  ++ +    N +
Sbjct: 394 NIFDAKSVSVMSAIDFSYNEI 414

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 57.7 bits (140), Expect = 6e-09
 Identities = 22/184 (11%), Positives = 44/184 (23%), Gaps = 52/184 (28%)

Query: 118 TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDNYCPPK 177
           T + L  N++ K+  D     LP L+ +DL  N  +                      P 
Sbjct: 491 TSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKF--------------------PT 530

Query: 178 CTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQI-GFLSNFTF 236
                  L                    R               D   N+          
Sbjct: 531 QPLNSSTL------------KGFGIRNQR---------------DAQGNRTLREWPE-GI 562

Query: 237 SPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIG 296
           +    L+QL +  N ++ ++        ++ ++ +  N    I               + 
Sbjct: 563 TLCPSLTQLQIGSNDIRKVNEKI---TPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLF 619

Query: 297 GNPL 300
            +  
Sbjct: 620 YDKT 623

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 56.6 bits (137), Expect = 1e-08
 Identities = 25/229 (10%), Positives = 58/229 (25%), Gaps = 35/229 (15%)

Query: 87  ACPSGCSCDGTRVDCSQRGLKEIPKDIPLYTTELILNDNEI-GKIKSDGLFGRLPNLIKL 145
               G + +  +          +  +     T L L      G++      G+L  L  L
Sbjct: 53  GTQPGANWNFNKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDA--IGQLTELEVL 110

Query: 146 DLRRNQVTGIEDNAFEGE------NDQGCLGDNYCP-------PKCTCT-VRVLFYDGRA 191
            L  +     E             ++Q      +         P+   + +     +   
Sbjct: 111 ALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDP 170

Query: 192 GECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNK 251
            +  I      +            +        +N I F+S      L+KL Q  +  + 
Sbjct: 171 QQKSIKKSSRIT------------LKDTQIGQLSNNITFVSK-AVMRLTKLRQFYMGNSP 217

Query: 252 LQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIGGNPL 300
               +       ++      +           + +L  +T + +   P 
Sbjct: 218 FVAENICEAWENENSEYAQQYKT----EDL-KWDNLKDLTDVEVYNCPN 261

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 55.0 bits (133), Expect = 4e-08
 Identities = 13/88 (14%), Positives = 29/88 (32%), Gaps = 10/88 (11%)

Query: 222 DLSNNQI-------GFLSNFT-FSPLSKLSQLILSYNKLQCIDR-DALAGLKSLRIISLH 272
           +++ N+                     K+  + + YN L+      +L  +K L ++   
Sbjct: 279 NVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECL 338

Query: 273 GNDISMIPEGAFADLHAITHLAIGGNPL 300
            N +      AF     +  L +  N +
Sbjct: 339 YNQLEGKLP-AFGSEIKLASLNLAYNQI 365

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 54.3 bits (131), Expect = 9e-08
 Identities = 9/66 (13%), Positives = 18/66 (27%), Gaps = 3/66 (4%)

Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPE 281
            + +N    +          +S L +  N    ID   +       +  L  +    I  
Sbjct: 572 QIGSND---IRKVNEKITPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQDIRG 628

Query: 282 GAFADL 287
               D+
Sbjct: 629 CDALDI 634

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 53.9 bits (130), Expect = 1e-07
 Identities = 23/216 (10%), Positives = 54/216 (25%), Gaps = 62/216 (28%)

Query: 102 SQRGLKEIPKDIPLYT--TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNA 159
           S    K I K   +    T++    N I  +       RL  L +  +  +         
Sbjct: 168 SDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKA--VMRLTKLRQFYMGNSPFVAEN--- 222

Query: 160 FEGENDQGCLGDNYCPPKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTM 219
                                               I     +     +       +   
Sbjct: 223 ------------------------------------ICEAWENENSEYAQQYKTEDLK-- 244

Query: 220 YRDLSNNQIGFLSNFTFS---P-----LSKLSQLILSYNKLQCIDRDA--------LAGL 263
           + +L +     + N       P     L ++  + ++ N+    ++              
Sbjct: 245 WDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVG 304

Query: 264 KSLRIISLHGNDISMIP-EGAFADLHAITHLAIGGN 298
           + ++II +  N++   P E +   +  +  L    N
Sbjct: 305 EKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYN 340

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 41.6 bits (98), Expect = 8e-04
 Identities = 6/38 (15%), Positives = 14/38 (36%)

Query: 118 TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGI 155
             + +  N +     +    ++  L  L+   NQ+ G 
Sbjct: 308 QIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGK 345

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 79.3 bits (196), Expect = 2e-16
 Identities = 35/207 (16%), Positives = 64/207 (30%), Gaps = 46/207 (22%)

Query: 97  TRVDCSQRGLKEIPKDIPLYT--TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTG 154
           T +     G+  I   +        L L DN+I  +        L  + +L+L  N +  
Sbjct: 44  TTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAP---LKNLTKITELELSGNPLKN 99

Query: 155 IEDNAFEGENDQGCLGDNYCPPKCTCT-VRVLFYDGRAGECYIAVELFSSRIRVSYYVGN 213
           +                           ++ L             +L S++I     +  
Sbjct: 100 VS-------------------AIAGLQSIKTL-------------DLTSTQITDVTPLAG 127

Query: 214 YPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHG 273
              +     L  NQI  +S    + L+ L  L +   ++  +    LA L  L  +    
Sbjct: 128 LS-NLQVLYLDLNQITNISPL--AGLTNLQYLSIGNAQVSDL--TPLANLSKLTTLKADD 182

Query: 274 NDISMIPEGAFADLHAITHLAIGGNPL 300
           N IS I     A L  +  + +  N +
Sbjct: 183 NKISDIS--PLASLPNLIEVHLKNNQI 207

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 58.9 bits (143), Expect = 1e-09
 Identities = 19/89 (21%), Positives = 32/89 (35%), Gaps = 6/89 (6%)

Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPE 281
                 +  +       L+ L  L L  N++  +    L  L  +  + L GN +  +  
Sbjct: 47  SAFGTGVTTIEGV--QYLNNLIGLELKDNQITDL--APLKNLTKITELELSGNPLKNVS- 101

Query: 282 GAFADLHAITHLAIGGNPLYCDCGLAWLS 310
            A A L +I  L +    +     LA LS
Sbjct: 102 -AIAGLQSIKTLDLTSTQITDVTPLAGLS 129

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 41.6 bits (98), Expect = 4e-04
 Identities = 13/61 (21%), Positives = 24/61 (39%), Gaps = 4/61 (6%)

Query: 97  TRVDCSQRGLKEIPKDIPLYT-TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGI 155
            ++   +  + +      L   T L      +  I+       L NLI L+L+ NQ+T +
Sbjct: 22  IKIAAGKSNVTDTVTQADLDGITTLSAFGTGVTTIEG---VQYLNNLIGLELKDNQITDL 78

Query: 156 E 156
            
Sbjct: 79  A 79

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 75.8 bits (187), Expect = 3e-16
 Identities = 29/73 (39%), Positives = 41/73 (56%), Gaps = 1/73 (1%)

Query: 88  CPSGCSCDGTRVDCSQRGLKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDL 147
           CPS CSC GT + C+ +GL  +P  IP   T L L  N++  +   G+F +L  L KL L
Sbjct: 1   CPSRCSCSGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQSL-PHGVFDKLTQLTKLSL 59

Query: 148 RRNQVTGIEDNAF 160
            +NQ+  + D  F
Sbjct: 60  SQNQIQSLPDGVF 72

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 66.9 bits (164), Expect = 4e-13
 Identities = 35/106 (33%), Positives = 54/106 (50%), Gaps = 2/106 (1%)

Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPE 281
            LS NQI  L +  F  L+KL+ L L  NKLQ +       L  L+ ++L  N +  +P+
Sbjct: 58  SLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPD 117

Query: 282 GAFADLHAITHLAIGGNPLYCDC-GLAWLSEWVKR-DYVEPGIARC 325
           G F  L ++  + +  NP  C C  + +LS W+ +    E G A+C
Sbjct: 118 GIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQGSAKC 163

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* Length = 130

 Score = 72.9 bits (179), Expect = 1e-15
 Identities = 22/84 (26%), Positives = 35/84 (41%), Gaps = 2/84 (2%)

Query: 265 SLRIISLHGNDISMIPEGAFADLHAITHLAIGGNPLYCDCGLAWLSEWVK--RDYVEPGI 322
               + L GN+++ +P G    L A+    +G NP  CDC L  L  W+    +      
Sbjct: 32  DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDCRLVPLRAWLAGRPERAPYRD 91

Query: 323 ARCTEPASMRDKLLLTAPASSFQC 346
            RC  P ++R +LL        + 
Sbjct: 92  LRCVAPPALRGRLLPYLAEDELRA 115

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* Length = 130

 Score = 66.8 bits (163), Expect = 1e-13
 Identities = 28/66 (42%), Positives = 35/66 (53%), Gaps = 3/66 (4%)

Query: 88  CPSGCSCDGTRVDCSQRGL--KEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKL 145
           CP+ CSC GT VDC +RGL    +P   P+ TTEL+L  N +  +   GL   LP L   
Sbjct: 2   CPAPCSCAGTLVDCGRRGLTWASLPTAFPVDTTELVLTGNNLTAL-PPGLLDALPALRTA 60

Query: 146 DLRRNQ 151
            L  N 
Sbjct: 61  HLGANP 66

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 74.7 bits (184), Expect = 2e-15
 Identities = 31/74 (41%), Positives = 40/74 (54%), Gaps = 1/74 (1%)

Query: 87  ACPSGCSCDGTRVDCSQRGLKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKLD 146
           ACPS CSC GT VDC  +    +P  IP     L L+DN+I K+   G+F  L NL +L 
Sbjct: 12  ACPSQCSCSGTTVDCRSKRHASVPAGIPTNAQILYLHDNQITKL-EPGVFDSLINLKELY 70

Query: 147 LRRNQVTGIEDNAF 160
           L  NQ+  +    F
Sbjct: 71  LGSNQLGALPVGVF 84

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 60.9 bits (148), Expect = 1e-10
 Identities = 34/97 (35%), Positives = 48/97 (49%), Gaps = 6/97 (6%)

Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDR--DALAGLKSLRIISLHGNDISMI 279
           DL  NQ+  L +  F  L  L +L +  NKL  + R  + L  L  L   +L  N +  I
Sbjct: 94  DLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHL---ALDQNQLKSI 150

Query: 280 PEGAFADLHAITHLAIGGNPLYCDC-GLAWLSEWVKR 315
           P GAF  L ++TH  + GNP  C+C  + +L  WV  
Sbjct: 151 PHGAFDRLSSLTHAYLFGNPWDCECRDIMYLRNWVAD 187

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 55.9 bits (135), Expect = 6e-09
 Identities = 31/127 (24%), Positives = 49/127 (38%), Gaps = 15/127 (11%)

Query: 174 CPPKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSN 233
           CP +C+C        G   +C        S+ R +      P +     L +NQI  L  
Sbjct: 13  CPSQCSC-------SGTTVDC-------RSK-RHASVPAGIPTNAQILYLHDNQITKLEP 57

Query: 234 FTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHL 293
             F  L  L +L L  N+L  +       L  L ++ L  N ++++P   F  L  +  L
Sbjct: 58  GVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKEL 117

Query: 294 AIGGNPL 300
            +  N L
Sbjct: 118 FMCCNKL 124

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 74.1 bits (183), Expect = 2e-14
 Identities = 21/79 (26%), Positives = 37/79 (46%), Gaps = 4/79 (5%)

Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPE 281
           ++ +NQI  +S    + LS+L+ L L+ N+L   D + + GL +L  + L  N I+ I  
Sbjct: 271 NVGSNQISDISVL--NNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIR- 327

Query: 282 GAFADLHAITHLAIGGNPL 300
              A L  +         +
Sbjct: 328 -PLASLSKMDSADFANQVI 345

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 70.3 bits (173), Expect = 3e-13
 Identities = 20/79 (25%), Positives = 35/79 (44%), Gaps = 6/79 (7%)

Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPE 281
            L+ NQI  +S    + L+ L       N++  I    +A +  L  + +  N I+ +  
Sbjct: 183 SLNYNQIEDISPL--ASLTSLHYFTAYVNQITDIT--PVANMTRLNSLKIGNNKITDLS- 237

Query: 282 GAFADLHAITHLAIGGNPL 300
              A+L  +T L IG N +
Sbjct: 238 -PLANLSQLTWLEIGTNQI 255

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 69.5 bits (171), Expect = 5e-13
 Identities = 32/193 (16%), Positives = 61/193 (31%), Gaps = 60/193 (31%)

Query: 118 TELILNDNE-IGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDNYCPP 176
             L L  N  +  +        +  L  L +  ++V  +                     
Sbjct: 135 YSLNLGANHNLSDLSP---LSNMTGLNYLTVTESKVKDVT--PIAN-------------- 175

Query: 177 KCTCT-VRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSN--------NQ 227
               T +  L              L  ++I     + +         L++        NQ
Sbjct: 176 ---LTDLYSL-------------SLNYNQIEDISPLAS---------LTSLHYFTAYVNQ 210

Query: 228 IGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADL 287
           I  ++    + +++L+ L +  NK+  +    LA L  L  + +  N IS I   A  DL
Sbjct: 211 ITDITP--VANMTRLNSLKIGNNKITDL--SPLANLSQLTWLEIGTNQISDIN--AVKDL 264

Query: 288 HAITHLAIGGNPL 300
             +  L +G N +
Sbjct: 265 TKLKMLNVGSNQI 277

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 68.0 bits (167), Expect = 2e-12
 Identities = 27/79 (34%), Positives = 41/79 (51%), Gaps = 6/79 (7%)

Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPE 281
           +L+ NQI  +S    S L KL+ L +  NK+  I   AL  L +LR + L+ ++IS I  
Sbjct: 72  NLNGNQITDISPL--SNLVKLTNLYIGTNKITDIS--ALQNLTNLRELYLNEDNISDIS- 126

Query: 282 GAFADLHAITHLAIGGNPL 300
              A+L  +  L +G N  
Sbjct: 127 -PLANLTKMYSLNLGANHN 144

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 65.6 bits (161), Expect = 9e-12
 Identities = 15/79 (18%), Positives = 34/79 (43%), Gaps = 5/79 (6%)

Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPE 281
            L+ + I  +S    + L+K+  L L  N     D   L+ +  L  +++  + +  +  
Sbjct: 116 YLNEDNISDISPL--ANLTKMYSLNLGANHNL-SDLSPLSNMTGLNYLTVTESKVKDVT- 171

Query: 282 GAFADLHAITHLAIGGNPL 300
              A+L  +  L++  N +
Sbjct: 172 -PIANLTDLYSLSLNYNQI 189

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 65.6 bits (161), Expect = 1e-11
 Identities = 22/79 (27%), Positives = 40/79 (50%), Gaps = 6/79 (7%)

Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPE 281
            + NN+I  LS    + LS+L+ L +  N++  I+  A+  L  L+++++  N IS I  
Sbjct: 227 KIGNNKITDLSPL--ANLSQLTWLEIGTNQISDIN--AVKDLTKLKMLNVGSNQISDIS- 281

Query: 282 GAFADLHAITHLAIGGNPL 300
               +L  +  L +  N L
Sbjct: 282 -VLNNLSQLNSLFLNNNQL 299

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 64.9 bits (159), Expect = 2e-11
 Identities = 15/79 (18%), Positives = 33/79 (41%), Gaps = 6/79 (7%)

Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPE 281
            ++  ++  +       L+ L  L L+ N++  I    L+ L  L  + +  N I+ I  
Sbjct: 50  VVAGEKVASIQGI--EYLTNLEYLNLNGNQITDIS--PLSNLVKLTNLYIGTNKITDIS- 104

Query: 282 GAFADLHAITHLAIGGNPL 300
            A  +L  +  L +  + +
Sbjct: 105 -ALQNLTNLRELYLNEDNI 122

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 64.1 bits (157), Expect = 3e-11
 Identities = 40/196 (20%), Positives = 66/196 (33%), Gaps = 44/196 (22%)

Query: 118 TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEG-ENDQG-CLGDNY-- 173
           T+L++   ++  I+       L NL  L+L  NQ+T I               +G N   
Sbjct: 47  TKLVVAGEKVASIQG---IEYLTNLEYLNLNGNQITDIS--PLSNLVKLTNLYIGTNKIT 101

Query: 174 -CPPKCTCT-VRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFL 231
                   T +R L              L    I     + N         L+      L
Sbjct: 102 DISALQNLTNLREL-------------YLNEDNISDISPLAN---------LTKMYSLNL 139

Query: 232 S-NFTFSPLSKLSQLI------LSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAF 284
             N   S LS LS +       ++ +K++ +    +A L  L  +SL+ N I  I     
Sbjct: 140 GANHNLSDLSPLSNMTGLNYLTVTESKVKDV--TPIANLTDLYSLSLNYNQIEDIS--PL 195

Query: 285 ADLHAITHLAIGGNPL 300
           A L ++ +     N +
Sbjct: 196 ASLTSLHYFTAYVNQI 211

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 57.2 bits (139), Expect = 6e-09
 Identities = 12/79 (15%), Positives = 30/79 (37%), Gaps = 6/79 (7%)

Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPE 281
                 I  +  F  + L++  + +L    +  +       L+S+  + + G  ++ I  
Sbjct: 6   ATLPAPINQI--FPDADLAEGIRAVLQKASVTDVV--TQEELESITKLVVAGEKVASIQ- 60

Query: 282 GAFADLHAITHLAIGGNPL 300
                L  + +L + GN +
Sbjct: 61  -GIEYLTNLEYLNLNGNQI 78

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 56.4 bits (137), Expect = 9e-09
 Identities = 16/56 (28%), Positives = 22/56 (39%), Gaps = 2/56 (3%)

Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDIS 277
            L+NNQ+G         L+ L+ L LS N +  I    LA L  +         I 
Sbjct: 293 FLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIR--PLASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 54.1 bits (131), Expect = 5e-08
 Identities = 26/202 (12%), Positives = 60/202 (29%), Gaps = 53/202 (26%)

Query: 106 LKEIPKDIPLYT-TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGEN 164
           + +I  D  L      +L    +  + +      L ++ KL +   +V  I+        
Sbjct: 12  INQIFPDADLAEGIRAVLQKASVTDVVT---QEELESITKLVVAGEKVASIQG------- 61

Query: 165 DQGCLGDNYCPPKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLS 224
               +   Y        +  L              L  ++I     + N         L 
Sbjct: 62  ----IE--YLT-----NLEYL-------------NLNGNQITDISPLSN---------LV 88

Query: 225 NNQIGFLSNFTFSPLSKLSQLI------LSYNKLQCIDRDALAGLKSLRIISLHGNDISM 278
                ++     + +S L  L       L+ + +  I    LA L  +  ++L  N    
Sbjct: 89  KLTNLYIGTNKITDISALQNLTNLRELYLNEDNISDI--SPLANLTKMYSLNLGANHNLS 146

Query: 279 IPEGAFADLHAITHLAIGGNPL 300
                 +++  + +L +  + +
Sbjct: 147 DLS-PLSNMTGLNYLTVTESKV 167

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 47.2 bits (113), Expect = 9e-06
 Identities = 16/62 (25%), Positives = 24/62 (38%), Gaps = 6/62 (9%)

Query: 97  TRVDCSQRGLKEIPKDIPLYT--TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTG 154
           T++  +   +  I   I   T    L LN N+I  I        L  L  L +  N++T 
Sbjct: 47  TKLVVAGEKVASIQ-GIEYLTNLEYLNLNGNQITDISP---LSNLVKLTNLYIGTNKITD 102

Query: 155 IE 156
           I 
Sbjct: 103 IS 104

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 45.2 bits (108), Expect = 4e-05
 Identities = 11/45 (24%), Positives = 15/45 (33%), Gaps = 3/45 (6%)

Query: 118 TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEG 162
             L +  N+I  I        L  L  L L  NQ+   +     G
Sbjct: 268 KMLNVGSNQISDISV---LNNLSQLNSLFLNNNQLGNEDMEVIGG 309

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 44.1 bits (105), Expect = 9e-05
 Identities = 11/39 (28%), Positives = 18/39 (46%), Gaps = 3/39 (7%)

Query: 118 TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIE 156
           T L +  N+I  I +      L  L  L++  NQ++ I 
Sbjct: 246 TWLEIGTNQISDINA---VKDLTKLKMLNVGSNQISDIS 281

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 43.7 bits (104), Expect = 1e-04
 Identities = 9/39 (23%), Positives = 14/39 (35%), Gaps = 3/39 (7%)

Query: 118 TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIE 156
             L      I +I  D     L   I+  L++  VT + 
Sbjct: 3   ATLATLPAPINQIFPD---ADLAEGIRAVLQKASVTDVV 38

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 42.9 bits (102), Expect = 2e-04
 Identities = 14/64 (21%), Positives = 26/64 (40%), Gaps = 10/64 (15%)

Query: 97  TRVDCSQRGLKEIPKDIPLYT----TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQV 152
             ++ +   + +I    PL      T L +  N+I  I +      L NL +L L  + +
Sbjct: 69  EYLNLNGNQITDIS---PLSNLVKLTNLYIGTNKITDISA---LQNLTNLRELYLNEDNI 122

Query: 153 TGIE 156
           + I 
Sbjct: 123 SDIS 126

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 42.5 bits (101), Expect = 3e-04
 Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 1/39 (2%)

Query: 118 TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIE 156
             L LN+N++G    +   G L NL  L L +N +T I 
Sbjct: 290 NSLFLNNNQLGNEDMEV-IGGLTNLTTLFLSQNHITDIR 327

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 41.8 bits (99), Expect = 5e-04
 Identities = 13/63 (20%), Positives = 20/63 (31%), Gaps = 10/63 (15%)

Query: 97  TRVDCSQRGLKEIPKDIPLYT----TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQV 152
           T +      + +I     L       EL LN++ I  I        L  +  L+L  N  
Sbjct: 91  TNLYIGTNKITDIS---ALQNLTNLRELYLNEDNISDISP---LANLTKMYSLNLGANHN 144

Query: 153 TGI 155
              
Sbjct: 145 LSD 147

>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor complex, blood coagulation, CL PAIR of basic residues, disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A {Homo sapiens} Length = 317

 Score = 72.8 bits (179), Expect = 3e-14
 Identities = 24/102 (23%), Positives = 32/102 (31%), Gaps = 5/102 (4%)

Query: 434 INIDDCLSHKCENNATCVDLIQAYECRCAPGFQGEFCQTKTPFCAGEYNPCRNGARCLDH 493
                C+S  C +N +C D I  Y C C+PG++G  C+     C  E         CL  
Sbjct: 3   KGGSPCISQPCLHNGSCQDSIWGYTCTCSPGYEGSNCELAKNECHPERTDGCQHF-CLPG 61

Query: 494 FSHYTCECTPGFSGVNCTVNVDDCVNHMC----QNGGTCVDG 531
              YTC C  G+                C             
Sbjct: 62  QESYTCSCAQGYRLGEDHKQCVPHDQCACGVLTSEKRAPDLQ 103

>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor complex, blood coagulation, CL PAIR of basic residues, disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A {Homo sapiens} Length = 317

 Score = 67.4 bits (165), Expect = 2e-12
 Identities = 23/81 (28%), Positives = 30/81 (37%), Gaps = 9/81 (11%)

Query: 512 VNVDDCVNHMCQNGGTCVDGINDYTCKCEGDFVGKFCEIAPFVAMMYPQTSPCQHHDCKN 571
                C++  C + G+C D I  YTC C   + G  CE+A          + C       
Sbjct: 3   KGGSPCISQPCLHNGSCQDSIWGYTCTCSPGYEGSNCELA---------KNECHPERTDG 53

Query: 572 GICFQPQGSNDYLCKCAPGYS 592
              F   G   Y C CA GY 
Sbjct: 54  CQHFCLPGQESYTCSCAQGYR 74

>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor complex, blood coagulation, CL PAIR of basic residues, disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A {Homo sapiens} Length = 317

 Score = 63.6 bits (155), Expect = 4e-11
 Identities = 20/95 (21%), Positives = 28/95 (29%), Gaps = 2/95 (2%)

Query: 482 NPCRNGARCLDHFSHYTCECTPGFSGVNCTVNVDDCVNHMCQNGG-TCVDGINDYTCKCE 540
            PC +   C D    YTC C+PG+ G NC +  ++C           C+ G   YTC C 
Sbjct: 11  QPCLHNGSCQDSIWGYTCTCSPGYEGSNCELAKNECHPERTDGCQHFCLPGQESYTCSCA 70

Query: 541 GDFVGKFCEIAPFVAMMYPQTSPCQH-HDCKNGIC 574
             +                                
Sbjct: 71  QGYRLGEDHKQCVPHDQCACGVLTSEKRAPDLQDL 105

>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor complex, blood coagulation, CL PAIR of basic residues, disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A {Homo sapiens} Length = 317

 Score = 58.6 bits (142), Expect = 2e-09
 Identities = 22/86 (25%), Positives = 31/86 (36%), Gaps = 1/86 (1%)

Query: 359 NACYKSPCTNQGVCEPLPERQYQCRCTPGYHGQHCEFMIDACYGNPCRNSGTCKLLEEGR 418
           + C   PC + G C+      Y C C+PGY G +CE   + C+           L  +  
Sbjct: 6   SPCISQPCLHNGSCQDSI-WGYTCTCSPGYEGSNCELAKNECHPERTDGCQHFCLPGQES 64

Query: 419 FNCECAPGYTGDRCEINIDDCLSHKC 444
           + C CA GY                C
Sbjct: 65  YTCSCAQGYRLGEDHKQCVPHDQCAC 90

>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor complex, blood coagulation, CL PAIR of basic residues, disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A {Homo sapiens} Length = 317

 Score = 55.9 bits (135), Expect = 1e-08
 Identities = 21/69 (30%), Positives = 26/69 (37%), Gaps = 9/69 (13%)

Query: 1  NGGTCVDGINDYTCKCEGDFVGKFCEIAPFVAMMYPQTSPCQHHDCKNGICFQPQGSNDY 60
          + G+C D I  YTC C   + G  CE+A          + C          F   G   Y
Sbjct: 15 HNGSCQDSIWGYTCTCSPGYEGSNCELA---------KNECHPERTDGCQHFCLPGQESY 65

Query: 61 LCKCAPGYS 69
           C CA GY 
Sbjct: 66 TCSCAQGYR 74

>1uzk_A Fibrillin-1; glycoprotein, extra-cellular matrix, calcium, TB domain, disease mutation, extracellular matrix, polymorphism, cbegf domain; 1.35A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.23.1.1 PDB: 1uzj_A 1uzp_A 1uzq_A Length = 162

 Score = 69.3 bits (170), Expect = 4e-14
 Identities = 28/148 (18%), Positives = 43/148 (29%), Gaps = 7/148 (4%)

Query: 397 IDACYGNPCRNSGTCKLLEEGRFNCECAPGYTGDRCEINIDDCLSHKCENNATCVDLIQA 456
           ++ C       SG C     G + C+C P +  +   +   D  S  C  +         
Sbjct: 3   VNECLDPTTCISGNCVNTP-GSYICDCPPDFELNPTRVGCVDTRSGNCYLDIRPRGDNGD 61

Query: 457 YECRCAPGFQGEFCQTKTPFCAGEYNPCRNGARCLDHFSHYTCECTPGFSGVNCTVN--- 513
             C    G                  PC              C    GF     TV    
Sbjct: 62  TACSNEIGVGVSKASCCCSLGKAWGTPCEMCPAVNTSEYKILCPGGEGFRPNPITVILED 121

Query: 514 VDDCV--NHMCQNGGTCVDGINDYTCKC 539
           +D+C     +CQ  G C++    + C+C
Sbjct: 122 IDECQELPGLCQG-GKCINTFGSFQCRC 148

>1uzk_A Fibrillin-1; glycoprotein, extra-cellular matrix, calcium, TB domain, disease mutation, extracellular matrix, polymorphism, cbegf domain; 1.35A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.23.1.1 PDB: 1uzj_A 1uzp_A 1uzq_A Length = 162

 Score = 65.5 bits (160), Expect = 1e-12
 Identities = 22/133 (16%), Positives = 34/133 (25%), Gaps = 7/133 (5%)

Query: 380 YQCRCTPGYHGQHCEFMIDACYGNPCRNSGTCKLLEEGRFNCECAPGY--TGDRCEINID 437
           Y C C P +                C      +    G   C    G   +   C  ++ 
Sbjct: 24  YICDCPPDFELNPTRVGCVDTRSGNCYLDIRPRGD-NGDTACSNEIGVGVSKASCCCSLG 82

Query: 438 DCLSHKCENNATCVDLIQAYECRCAPGFQGEFCQTKTP---FCAGEYNPCRNGARCLDHF 494
                 CE             C    GF+             C      C+ G +C++ F
Sbjct: 83  KAWGTPCEMCPAVNTSEYKILCPGGEGFRPNPITVILEDIDECQELPGLCQGG-KCINTF 141

Query: 495 SHYTCECTPGFSG 507
             + C C  G+  
Sbjct: 142 GSFQCRCPTGYYL 154

>1uzk_A Fibrillin-1; glycoprotein, extra-cellular matrix, calcium, TB domain, disease mutation, extracellular matrix, polymorphism, cbegf domain; 1.35A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.23.1.1 PDB: 1uzj_A 1uzp_A 1uzq_A Length = 162

 Score = 41.2 bits (97), Expect = 2e-04
 Identities = 18/117 (15%), Positives = 27/117 (23%), Gaps = 19/117 (16%)

Query: 482 NPCRNGARCLDHFSHYTCECTPGFSGVNCTVNVDDCVNHMCQNGGTCVDGINDYTCKC-- 539
             C +G  C++    Y C+C P F      V   D  +  C           D  C    
Sbjct: 10  TTCISG-NCVNTPGSYICDCPPDFELNPTRVGCVDTRSGNCYLDIRPRGDNGDTACSNEI 68

Query: 540 --EGDFVGKFCEIAPFVAMMYPQTSPCQHHDCK-NGICFQPQGSNDYLCKCAPGYSG 593
                     C +                  C+        +     LC    G+  
Sbjct: 69  GVGVSKASCCCSL-----------GKAWGTPCEMCPAVNTSEYK--ILCPGGEGFRP 112

>1tpg_A T-plasminogen activator F1-G; plasminogen activation; NMR {Homo sapiens} SCOP: g.3.11.1 g.27.1.1 PDB: 1tpm_A 1tpn_A Length = 91

 Score = 66.0 bits (161), Expect = 1e-13
 Identities = 20/62 (32%), Positives = 26/62 (41%), Gaps = 2/62 (3%)

Query: 376 PERQYQCRCTPGYHGQHCEFMIDACYGNPCRNSGTCK-LLEEGRFNCECAPGYTGDRCEI 434
             R   C C  G    H    + +C    C N GTC+  L    F C+C  G+ G  CEI
Sbjct: 28  SNRVEYCWCNSGRAQCHSV-PVKSCSEPRCFNGGTCQQALYFSDFVCQCPEGFAGKSCEI 86

Query: 435 NI 436
           + 
Sbjct: 87  DT 88

>1tpg_A T-plasminogen activator F1-G; plasminogen activation; NMR {Homo sapiens} SCOP: g.3.11.1 g.27.1.1 PDB: 1tpm_A 1tpn_A Length = 91

 Score = 65.6 bits (160), Expect = 1e-13
 Identities = 26/97 (26%), Positives = 35/97 (36%), Gaps = 13/97 (13%)

Query: 456 AYECRCAPGFQGEFCQTKTPFCAGEYNPCRNGARCLDHFSHYTCECTPGFSGVNCTVNVD 515
           +Y+  C         Q    +      P     R         C C  G +    +V V 
Sbjct: 1   SYQVICRDEKTQMIYQQHQSWL----RPVLRSNRV------EYCWCNSGRAQ-CHSVPVK 49

Query: 516 DCVNHMCQNGGTCVDGI--NDYTCKCEGDFVGKFCEI 550
            C    C NGGTC   +  +D+ C+C   F GK CEI
Sbjct: 50  SCSEPRCFNGGTCQQALYFSDFVCQCPEGFAGKSCEI 86

>1tpg_A T-plasminogen activator F1-G; plasminogen activation; NMR {Homo sapiens} SCOP: g.3.11.1 g.27.1.1 PDB: 1tpm_A 1tpn_A Length = 91

 Score = 62.5 bits (152), Expect = 2e-12
 Identities = 20/97 (20%), Positives = 30/97 (30%), Gaps = 12/97 (12%)

Query: 380 YQCRCTPGYHGQHCEFMIDACYGNPCRNSGTCKLLEEGRFNCECAPGYTGDRCEINIDDC 439
           YQ  C         +      +  P   S            C C  G       + +  C
Sbjct: 2   YQVICRDEKTQMIYQ--QHQSWLRPVLRSN-------RVEYCWCNSGRAQ-CHSVPVKSC 51

Query: 440 LSHKCENNATCVDLIQA--YECRCAPGFQGEFCQTKT 474
              +C N  TC   +    + C+C  GF G+ C+  T
Sbjct: 52  SEPRCFNGGTCQQALYFSDFVCQCPEGFAGKSCEIDT 88

>2w86_A Fibrillin-1, fibrillin1; phosphoprotein, EGF-like domain, disease mutation, craniosynostosis, extracellular matrix, fibrillin calcium cbegf hybrid; 1.80A {Homo sapiens} Length = 147

 Score = 67.4 bits (165), Expect = 1e-13
 Identities = 36/147 (24%), Positives = 53/147 (36%), Gaps = 21/147 (14%)

Query: 397 IDACYGNPCRNSGTCKLLEEGRFNCECAPGYTGDRCEINIDDCLSHKCENNATCVDLIQA 456
           ID C  +PC N G CK    G F CEC+   T D  +    +          TC   +  
Sbjct: 4   IDECESSPCIN-GVCKNSP-GSFICECSSESTLDPTKTICIET------IKGTCWQTVID 55

Query: 457 YECRCAPGFQGEFCQTKTPFCAGEYNPCRNGARCLDHFSHYTCECTPGFSGVNCT--VNV 514
             C           Q  +   A   +PC                C  G+S +  T   ++
Sbjct: 56  GRCEININGATLKSQCCSSLGAAWGSPCTLCQ--------VDPICGKGYSRIKGTQCEDI 107

Query: 515 DDCV--NHMCQNGGTCVDGINDYTCKC 539
           D+C     +C+N G CV+    + C+C
Sbjct: 108 DECEVFPGVCKN-GLCVNTRGSFKCQC 133

>2w86_A Fibrillin-1, fibrillin1; phosphoprotein, EGF-like domain, disease mutation, craniosynostosis, extracellular matrix, fibrillin calcium cbegf hybrid; 1.80A {Homo sapiens} Length = 147

 Score = 51.2 bits (123), Expect = 6e-08
 Identities = 20/113 (17%), Positives = 37/113 (32%), Gaps = 17/113 (15%)

Query: 358 CNACYKSPCTNQGVCEPLPERQYQCRCTPGYHGQHCEFMIDACYGNPCRNSGTCKLLEEG 417
           C    K  C    +       + +           C   + A +G+PC            
Sbjct: 41  CIETIKGTCWQTVID-----GRCEININGATLKSQCCSSLGAAWGSPC---------TLC 86

Query: 418 RFNCECAPGYTGDRCE--INIDDCLSHKCE-NNATCVDLIQAYECRCAPGFQG 467
           + +  C  GY+  +     +ID+C        N  CV+   +++C+C  G   
Sbjct: 87  QVDPICGKGYSRIKGTQCEDIDECEVFPGVCKNGLCVNTRGSFKCQCPSGMTL 139

>2w86_A Fibrillin-1, fibrillin1; phosphoprotein, EGF-like domain, disease mutation, craniosynostosis, extracellular matrix, fibrillin calcium cbegf hybrid; 1.80A {Homo sapiens} Length = 147

 Score = 40.8 bits (96), Expect = 2e-04
 Identities = 17/114 (14%), Positives = 26/114 (22%), Gaps = 23/114 (20%)

Query: 480 EYNPCRNGARCLDHFSHYTCECTPGFSGVNCTVNVDDCVNHMCQNGGTCVDGINDYTCKC 539
           E +PC NG  C +    + CEC+   +         + +   C                 
Sbjct: 8   ESSPCING-VCKNSPGSFICECSSESTLDPTKTICIETIKGTCWQTVID----GRCEINI 62

Query: 540 EGDFVGKFCEIAPFVAMMYPQTSPCQHHDCKNGICFQPQGSNDYLCKCAPGYSG 593
            G  +   C  +                 C                 C  GYS 
Sbjct: 63  NGATLKSQCCSSL---------GAAWGSPCTLC---------QVDPICGKGYSR 98

>1yo8_A Thrombospondin-2; EGF, Ca(2+)-binding domains, lectin domain, disulfide, cell; HET: NAG MAN; 2.60A {Homo sapiens} PDB: 2rhp_A* Length = 634

 Score = 72.0 bits (176), Expect = 2e-13
 Identities = 37/226 (16%), Positives = 59/226 (26%), Gaps = 31/226 (13%)

Query: 397 IDACYGNPCRNSGTCKLLEEGRFNC-ECAPGYTG--------DRCEINIDDCLSHKCENN 447
            D C  NPC     C    +G ++C  C  G+ G        D C +  D C        
Sbjct: 3   PDGCLSNPCFPGAQCSSFPDGSWSCGFCPVGFLGNGTHCEDLDECALVPDIC--FSTSKV 60

Query: 448 ATCVDLIQAYEC-RCAPGFQGEFCQTKTPF--------------CAGEYNPCRNGARCLD 492
             CV+    + C  C P ++G                       C  + + C   A C+ 
Sbjct: 61  PRCVNTQPGFHCLPCPPRYRGNQPVGVGLEAAKTEKQVCEPENPCKDKTHNCHKHAECIY 120

Query: 493 HFSH----YTCECTPGFSGVNCTVNVDDCVNHMCQNGGTCVDGINDYTCKCEGDFVGKFC 548
                   Y CEC  G++G       D  ++        C      +  K     +    
Sbjct: 121 LGHFSDPMYKCECQTGYAGDGLICGEDSDLDGWPNLNLVCATNATYHCIKDNCPHLPNSG 180

Query: 549 EIAPFVAMMYPQTSPCQHHD-CKNGICFQPQGSNDYLCKCAPGYSG 593
           +       +         +D   +         N           G
Sbjct: 181 QEDFDKDGIGDACDDDDDNDGVTDEKDNCQLLFNPRQADYDKDEVG 226

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 67.8 bits (166), Expect = 1e-12
 Identities = 24/89 (26%), Positives = 40/89 (44%), Gaps = 6/89 (6%)

Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPE 281
            L+ N++  +     + L  L  L L  NK++ +   +L  LK L+ +SL  N IS I  
Sbjct: 74  FLNGNKLTDIKPL--ANLKNLGWLFLDENKVKDL--SSLKDLKKLKSLSLEHNGISDIN- 128

Query: 282 GAFADLHAITHLAIGGNPLYCDCGLAWLS 310
                L  +  L +G N +     L+ L+
Sbjct: 129 -GLVHLPQLESLYLGNNKITDITVLSRLT 156

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 63.9 bits (156), Expect = 2e-11
 Identities = 23/79 (29%), Positives = 34/79 (43%), Gaps = 6/79 (7%)

Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPE 281
            L +N I  ++      L +L  L L  NK+  I    L+ L  L  +SL  N IS I  
Sbjct: 118 SLEHNGISDINGL--VHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDIV- 172

Query: 282 GAFADLHAITHLAIGGNPL 300
              A L  + +L +  N +
Sbjct: 173 -PLAGLTKLQNLYLSKNHI 190

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 60.8 bits (148), Expect = 2e-10
 Identities = 20/79 (25%), Positives = 36/79 (45%), Gaps = 6/79 (7%)

Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPE 281
             +N+ I  +       L  +++L L+ NKL  I    LA LK+L  + L  N +  +  
Sbjct: 52  IANNSDIKSVQGI--QYLPNVTKLFLNGNKLTDI--KPLANLKNLGWLFLDENKVKDLS- 106

Query: 282 GAFADLHAITHLAIGGNPL 300
            +  DL  +  L++  N +
Sbjct: 107 -SLKDLKKLKSLSLEHNGI 124

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 58.5 bits (142), Expect = 1e-09
 Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 4/72 (5%)

Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPE 281
            L +NQI  +     + L+KL  L LS N +  +   ALAGLK+L ++ L   +    P 
Sbjct: 162 SLEDNQISDIVPL--AGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNKPI 217

Query: 282 GAFADLHAITHL 293
              ++L     +
Sbjct: 218 NHQSNLVVPNTV 229

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 55.4 bits (134), Expect = 1e-08
 Identities = 14/79 (17%), Positives = 36/79 (45%), Gaps = 6/79 (7%)

Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPE 281
           +L    +      T + L+ + Q+I + + ++ +    +  L ++  + L+GN ++ I  
Sbjct: 30  NLKKKSVTDAV--TQNELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKP 85

Query: 282 GAFADLHAITHLAIGGNPL 300
              A+L  +  L +  N +
Sbjct: 86  --LANLKNLGWLFLDENKV 102

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 43.9 bits (104), Expect = 9e-05
 Identities = 13/62 (20%), Positives = 31/62 (50%), Gaps = 4/62 (6%)

Query: 97  TRVDCSQRGLKEIPKDIPLYT-TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGI 155
            + +  ++ + +      L +  ++I N+++I  ++       LPN+ KL L  N++T I
Sbjct: 27  IKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQG---IQYLPNVTKLFLNGNKLTDI 83

Query: 156 ED 157
           + 
Sbjct: 84  KP 85

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 41.2 bits (97), Expect = 5e-04
 Identities = 13/40 (32%), Positives = 17/40 (42%), Gaps = 3/40 (7%)

Query: 118 TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIED 157
             L L +N+I  I       RL  L  L L  NQ++ I  
Sbjct: 137 ESLYLGNNKITDITV---LSRLTKLDTLSLEDNQISDIVP 173

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 40.8 bits (96), Expect = 8e-04
 Identities = 14/61 (22%), Positives = 25/61 (40%), Gaps = 4/61 (6%)

Query: 97  TRVDCSQRGLKEIPKDIPLYT-TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGI 155
           T++  +   L +I     L     L L++N++  + S      L  L  L L  N ++ I
Sbjct: 71  TKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSS---LKDLKKLKSLSLEHNGISDI 127

Query: 156 E 156
            
Sbjct: 128 N 128

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 69.4 bits (169), Expect = 1e-12
 Identities = 40/207 (19%), Positives = 66/207 (31%), Gaps = 68/207 (32%)

Query: 97  TRVDCSQRGLKEIPKDIPLYT--TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTG 154
            ++  +   +K + + I      T+L LN N++  IK       L NL  L L  N++  
Sbjct: 46  DQIIANNSDIKSV-QGIQYLPNVTKLFLNGNKLTDIKP---LTNLKNLGWLFLDENKIKD 101

Query: 155 IEDNAFEGENDQGCLGDNYCPPKCTCT-VRVLFYDGRAGECYIAVELFSSRIRVSYYVGN 213
           +                           ++ L              L  + I        
Sbjct: 102 LS-------------------SLKDLKKLKSL-------------SLEHNGI-------- 121

Query: 214 YPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHG 273
                   D++      L +     L +L  L L  NK+  I    L+ L  L  +SL  
Sbjct: 122 -------SDING-----LVH-----LPQLESLYLGNNKITDI--TVLSRLTKLDTLSLED 162

Query: 274 NDISMIPEGAFADLHAITHLAIGGNPL 300
           N IS I     A L  + +L +  N +
Sbjct: 163 NQISDIV--PLAGLTKLQNLYLSKNHI 187

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 68.2 bits (166), Expect = 4e-12
 Identities = 24/89 (26%), Positives = 40/89 (44%), Gaps = 6/89 (6%)

Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPE 281
            L+ N++  +     + L  L  L L  NK++ +   +L  LK L+ +SL  N IS I  
Sbjct: 71  FLNGNKLTDIKPL--TNLKNLGWLFLDENKIKDL--SSLKDLKKLKSLSLEHNGISDIN- 125

Query: 282 GAFADLHAITHLAIGGNPLYCDCGLAWLS 310
                L  +  L +G N +     L+ L+
Sbjct: 126 -GLVHLPQLESLYLGNNKITDITVLSRLT 153

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 67.8 bits (165), Expect = 5e-12
 Identities = 29/183 (15%), Positives = 52/183 (28%), Gaps = 63/183 (34%)

Query: 118 TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDNYCPPK 177
            E I     I +I  D         IK +L++  VT                        
Sbjct: 2   GETITVSTPIKQIFPDD---AFAETIKDNLKKKSVTDAV------------------TQN 40

Query: 178 CTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSNFTFS 237
              ++  +                +S I               + +       +      
Sbjct: 41  ELNSIDQI-------------IANNSDI---------------KSVQG-----IQYLP-- 65

Query: 238 PLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIGG 297
               +++L L+ NKL  I    L  LK+L  + L  N I  +   +  DL  +  L++  
Sbjct: 66  ---NVTKLFLNGNKLTDI--KPLTNLKNLGWLFLDENKIKDLS--SLKDLKKLKSLSLEH 118

Query: 298 NPL 300
           N +
Sbjct: 119 NGI 121

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 56.7 bits (136), Expect = 1e-08
 Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 4/72 (5%)

Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPE 281
            L +NQI  +     + L+KL  L LS N +  +   ALAGLK+L ++ L   +    P 
Sbjct: 159 SLEDNQISDIVPL--AGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNKPI 214

Query: 282 GAFADLHAITHL 293
              ++L     +
Sbjct: 215 NHQSNLVVPNTV 226

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 65.8 bits (161), Expect = 2e-12
 Identities = 13/79 (16%), Positives = 27/79 (34%), Gaps = 2/79 (2%)

Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPE 281
            ++N      +    S LS L +L +    +       L+GL SL ++ +  +       
Sbjct: 72  TINNIHATNYNPI--SGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSIL 129

Query: 282 GAFADLHAITHLAIGGNPL 300
                L  +  + +  N  
Sbjct: 130 TKINTLPKVNSIDLSYNGA 148

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 61.9 bits (151), Expect = 3e-11
 Identities = 13/79 (16%), Positives = 32/79 (40%), Gaps = 4/79 (5%)

Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPE 281
            L+N  +  L+   +     +  L ++         + ++GL +L  + + G D++    
Sbjct: 50  TLANINVTDLTGIEY--AHNIKDLTINNIHATNY--NPISGLSNLERLRIMGKDVTSDKI 105

Query: 282 GAFADLHAITHLAIGGNPL 300
              + L ++T L I  +  
Sbjct: 106 PNLSGLTSLTLLDISHSAH 124

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 59.2 bits (144), Expect = 3e-10
 Identities = 14/79 (17%), Positives = 29/79 (36%), Gaps = 3/79 (3%)

Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPE 281
           D+S++          + L K++ + LSYN     D   L  L  L+ +++  + +     
Sbjct: 118 DISHSAHDDSILTKINTLPKVNSIDLSYNG-AITDIMPLKTLPELKSLNIQFDGVHDYR- 175

Query: 282 GAFADLHAITHLAIGGNPL 300
               D   +  L      +
Sbjct: 176 -GIEDFPKLNQLYAFSQTI 193

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 41.9 bits (99), Expect = 2e-04
 Identities = 5/39 (12%), Positives = 12/39 (30%), Gaps = 3/39 (7%)

Query: 118 TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIE 156
             L +  + +   +        P L +L      + G +
Sbjct: 162 KSLNIQFDGVHDYRG---IEDFPKLNQLYAFSQTIGGKK 197

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 39.9 bits (94), Expect = 7e-04
 Identities = 5/39 (12%), Positives = 11/39 (28%), Gaps = 3/39 (7%)

Query: 118 TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIE 156
           T + L +  +  +          N+  L +     T   
Sbjct: 47  TYITLANINVTDLTG---IEYAHNIKDLTINNIHATNYN 82

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 68.1 bits (167), Expect = 3e-12
 Identities = 33/199 (16%), Positives = 61/199 (30%), Gaps = 71/199 (35%)

Query: 117 TTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDNYCPP 176
            +  I  D  I +I +D     L   +K  L +  VT                       
Sbjct: 4   GSATITQDTPINQIFTDT---ALAEKMKTVLGKTNVTDT-------------------VS 41

Query: 177 KCTCT-VRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSNFT 235
           +     V  L             +     I               + +    + +L+N T
Sbjct: 42  QTDLDQVTTL-------------QADRLGI---------------KSIDG--VEYLNNLT 71

Query: 236 F-----------SPLSKLSQLI---LSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPE 281
                       +PL  L++L+   ++ N++  I    LA L +L  ++L  N I+ I  
Sbjct: 72  QINFSNNQLTDITPLKNLTKLVDILMNNNQIADI--TPLANLTNLTGLTLFNNQITDID- 128

Query: 282 GAFADLHAITHLAIGGNPL 300
               +L  +  L +  N +
Sbjct: 129 -PLKNLTNLNRLELSSNTI 146

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 66.9 bits (164), Expect = 6e-12
 Identities = 23/79 (29%), Positives = 40/79 (50%), Gaps = 6/79 (7%)

Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPE 281
           D+S+N++  +S    + L+ L  LI + N++  I    L  L +L  +SL+GN +  I  
Sbjct: 183 DISSNKVSDISVL--AKLTNLESLIATNNQISDIT--PLGILTNLDELSLNGNQLKDIG- 237

Query: 282 GAFADLHAITHLAIGGNPL 300
              A L  +T L +  N +
Sbjct: 238 -TLASLTNLTDLDLANNQI 255

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 65.4 bits (160), Expect = 2e-11
 Identities = 23/79 (29%), Positives = 35/79 (44%), Gaps = 6/79 (7%)

Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPE 281
            L  N I  +S    S L+KL +L    NK+  +   +LA L ++  +S   N IS +  
Sbjct: 315 TLYFNNISDISPV--SSLTKLQRLFFYNNKVSDVS--SLANLTNINWLSAGHNQISDLTP 370

Query: 282 GAFADLHAITHLAIGGNPL 300
              A+L  IT L +     
Sbjct: 371 --LANLTRITQLGLNDQAW 387

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 64.2 bits (157), Expect = 5e-11
 Identities = 27/79 (34%), Positives = 44/79 (55%), Gaps = 6/79 (7%)

Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPE 281
           DL+NNQI  L+    S L+KL++L L  N++  I    LAGL +L  + L+ N +  I  
Sbjct: 249 DLANNQISNLAPL--SGLTKLTELKLGANQISNIS--PLAGLTALTNLELNENQLEDISP 304

Query: 282 GAFADLHAITHLAIGGNPL 300
              ++L  +T+L +  N +
Sbjct: 305 --ISNLKNLTYLTLYFNNI 321

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 63.8 bits (156), Expect = 6e-11
 Identities = 23/79 (29%), Positives = 40/79 (50%), Gaps = 6/79 (7%)

Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPE 281
            L  NQI  +S    + L+ L+ L L+ N+L+ I    ++ LK+L  ++L+ N+IS I  
Sbjct: 271 KLGANQISNISPL--AGLTALTNLELNENQLEDIS--PISNLKNLTYLTLYFNNISDISP 326

Query: 282 GAFADLHAITHLAIGGNPL 300
              + L  +  L    N +
Sbjct: 327 --VSSLTKLQRLFFYNNKV 343

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 63.4 bits (155), Expect = 9e-11
 Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 6/79 (7%)

Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPE 281
             +NNQI  ++      L+ L +L L+ N+L+ I    LA L +L  + L  N IS +  
Sbjct: 205 IATNNQISDITPL--GILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQISNLA- 259

Query: 282 GAFADLHAITHLAIGGNPL 300
              + L  +T L +G N +
Sbjct: 260 -PLSGLTKLTELKLGANQI 277

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 62.3 bits (152), Expect = 2e-10
 Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 6/77 (7%)

Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPE 281
            ++NNQI  ++    + L+ L+ L L  N++  ID   L  L +L  + L  N IS I  
Sbjct: 96  LMNNNQIADITPL--ANLTNLTGLTLFNNQITDID--PLKNLTNLNRLELSSNTISDIS- 150

Query: 282 GAFADLHAITHLAIGGN 298
            A + L ++  L+ G  
Sbjct: 151 -ALSGLTSLQQLSFGNQ 166

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 62.3 bits (152), Expect = 2e-10
 Identities = 21/79 (26%), Positives = 31/79 (39%), Gaps = 7/79 (8%)

Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPE 281
              N           + L+ L +L +S NK+  I    LA L +L  +    N IS I  
Sbjct: 162 SFGNQVTDLKP---LANLTTLERLDISSNKVSDIS--VLAKLTNLESLIATNNQISDIT- 215

Query: 282 GAFADLHAITHLAIGGNPL 300
                L  +  L++ GN L
Sbjct: 216 -PLGILTNLDELSLNGNQL 233

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 58.8 bits (143), Expect = 2e-09
 Identities = 40/208 (19%), Positives = 71/208 (34%), Gaps = 71/208 (34%)

Query: 97  TRVDCSQRGLKEIPKDIPLYT----TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQV 152
           T +   + G+K I     +      T++  ++N++  I        L  L+ + +  NQ+
Sbjct: 49  TTLQADRLGIKSID---GVEYLNNLTQINFSNNQLTDITP---LKNLTKLVDILMNNNQI 102

Query: 153 TGIEDNAFEGENDQGCLGDNYCPPKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVG 212
             I             L         T  +  L              LF+++I       
Sbjct: 103 ADITP-----------LA------NLT-NLTGLT-------------LFNNQI------- 124

Query: 213 NYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLH 272
                    D+    +  L+N     L++L    LS N +  I   AL+GL SL+ +S  
Sbjct: 125 --------TDIDP--LKNLTN-----LNRLE---LSSNTISDI--SALSGLTSLQQLSFG 164

Query: 273 GNDISMIPEGAFADLHAITHLAIGGNPL 300
                + P    A+L  +  L I  N +
Sbjct: 165 NQVTDLKP---LANLTTLERLDISSNKV 189

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 57.7 bits (140), Expect = 6e-09
 Identities = 22/79 (27%), Positives = 32/79 (40%), Gaps = 7/79 (8%)

Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPE 281
           +LS+N I  +S    S L+ L QL          D   LA L +L  + +  N +S I  
Sbjct: 140 ELSSNTISDISAL--SGLTSLQQLSFGNQV---TDLKPLANLTTLERLDISSNKVSDIS- 193

Query: 282 GAFADLHAITHLAIGGNPL 300
              A L  +  L    N +
Sbjct: 194 -VLAKLTNLESLIATNNQI 211

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 49.2 bits (118), Expect = 3e-06
 Identities = 14/79 (17%), Positives = 29/79 (36%), Gaps = 4/79 (5%)

Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPE 281
              +NQI  L+    + L++++QL L+         +  A +     +       ++I  
Sbjct: 359 SAGHNQISDLTPL--ANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKN--VTGALIAP 414

Query: 282 GAFADLHAITHLAIGGNPL 300
              +D  + T   I  N  
Sbjct: 415 ATISDGGSYTEPDITWNLP 433

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 48.4 bits (116), Expect = 5e-06
 Identities = 12/61 (19%), Positives = 21/61 (34%), Gaps = 4/61 (6%)

Query: 97  TRVDCSQRGLKEIPKDIPLYT-TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGI 155
            +    +  + +      L   T L  +   I  I        L NL +++   NQ+T I
Sbjct: 27  MKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDG---VEYLNNLTQINFSNNQLTDI 83

Query: 156 E 156
            
Sbjct: 84  T 84

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 45.0 bits (107), Expect = 5e-05
 Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 3/40 (7%)

Query: 118 TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIED 157
            EL LN N++  I +      L NL  LDL  NQ++ +  
Sbjct: 224 DELSLNGNQLKDIGT---LASLTNLTDLDLANNQISNLAP 260

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 43.0 bits (102), Expect = 2e-04
 Identities = 8/39 (20%), Positives = 16/39 (41%), Gaps = 3/39 (7%)

Query: 118 TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIE 156
             L   +N++  + S      L N+  L    NQ++ + 
Sbjct: 334 QRLFFYNNKVSDVSS---LANLTNINWLSAGHNQISDLT 369

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 42.3 bits (100), Expect = 4e-04
 Identities = 10/39 (25%), Positives = 17/39 (43%), Gaps = 3/39 (7%)

Query: 118 TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIE 156
             L ++ N++  I       +L NL  L    NQ++ I 
Sbjct: 180 ERLDISSNKVSDISV---LAKLTNLESLIATNNQISDIT 215

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 41.9 bits (99), Expect = 5e-04
 Identities = 12/40 (30%), Positives = 19/40 (47%), Gaps = 3/40 (7%)

Query: 118 TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIED 157
           T+L L +N+I  +        L  L +L L  NQ++ I  
Sbjct: 246 TDLDLANNQISNLAP---LSGLTKLTELKLGANQISNISP 282

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 41.5 bits (98), Expect = 7e-04
 Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 3/39 (7%)

Query: 118 TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIE 156
           T L LN+N++  I        L NL  L L  N ++ I 
Sbjct: 290 TNLELNENQLEDISP---ISNLKNLTYLTLYFNNISDIS 325

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 41.1 bits (97), Expect = 8e-04
 Identities = 14/39 (35%), Positives = 18/39 (46%), Gaps = 3/39 (7%)

Query: 118 TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIE 156
             LI  +N+I  I      G L NL +L L  NQ+  I 
Sbjct: 202 ESLIATNNQISDITP---LGILTNLDELSLNGNQLKDIG 237

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 41.1 bits (97), Expect = 9e-04
 Identities = 18/64 (28%), Positives = 25/64 (39%), Gaps = 10/64 (15%)

Query: 97  TRVDCSQRGLKEIPKDIPLYT----TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQV 152
           T +D +   +  +    PL      TEL L  N+I  I        L  L  L+L  NQ+
Sbjct: 246 TDLDLANNQISNLA---PLSGLTKLTELKLGANQISNISP---LAGLTALTNLELNENQL 299

Query: 153 TGIE 156
             I 
Sbjct: 300 EDIS 303

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 68.4 bits (167), Expect = 3e-12
 Identities = 39/214 (18%), Positives = 77/214 (35%), Gaps = 42/214 (19%)

Query: 92  CSCDGTRV-DCSQRGLKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRN 150
           C  +G  V +  + GL  +P  +P + T L++ DN +  + +       P L  L++  N
Sbjct: 37  CLNNGNAVLNVGESGLTTLPDCLPAHITTLVIPDNNLTSLPA-----LPPELRTLEVSGN 91

Query: 151 QVTGIEDNAFEGEN-DQGCLGDNYCPPKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSY 209
           Q+T +                  + P   +  +  L              +F +++    
Sbjct: 92  QLTSLPVLPPGLLELSIFSNPLTHLPALPS-GLCKL-------------WIFGNQLT--- 134

Query: 210 YVGNYPVS-TMYRDLS--NNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSL 266
              + PV     ++LS  +NQ+  L        S+L +L    N+L  +          L
Sbjct: 135 ---SLPVLPPGLQELSVSDNQLASLPAL----PSELCKLWAYNNQLTSLP----MLPSGL 183

Query: 267 RIISLHGNDISMIPEGAFADLHAITHLAIGGNPL 300
           + +S+  N ++ +P         +  L    N L
Sbjct: 184 QELSVSDNQLASLPT----LPSELYKLWAYNNRL 213

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 53.0 bits (127), Expect = 2e-07
 Identities = 23/96 (23%), Positives = 40/96 (41%), Gaps = 23/96 (23%)

Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRI------------- 268
              NN++  L        S L +LI+S N+L  +     + LK L +             
Sbjct: 207 WAYNNRLTSLPAL----PSGLKELIVSGNRLTSLP-VLPSELKELMVSGNRLTSLPMLPS 261

Query: 269 ----ISLHGNDISMIPEGAFADLHAITHLAIGGNPL 300
               +S++ N ++ +PE     L + T + + GNPL
Sbjct: 262 GLLSLSVYRNQLTRLPES-LIHLSSETTVNLEGNPL 296

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 52.2 bits (125), Expect = 3e-07
 Identities = 18/79 (22%), Positives = 32/79 (40%), Gaps = 8/79 (10%)

Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPE 281
            +S N++  L        S L  L +  N+L  +  ++L  L S   ++L GN +S    
Sbjct: 247 MVSGNRLTSLPML----PSGLLSLSVYRNQLTRL-PESLIHLSSETTVNLEGNPLSERTL 301

Query: 282 GAFADLHAITHLAIGGNPL 300
            A  ++   T       P+
Sbjct: 302 QALREI---TSAPGYSGPI 317

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 47.6 bits (113), Expect = 9e-06
 Identities = 18/79 (22%), Positives = 30/79 (37%), Gaps = 12/79 (15%)

Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPE 281
              NNQ+  L        S L +L +S N+L  +     + L  L     + N ++ +P 
Sbjct: 167 WAYNNQLTSLPML----PSGLQELSVSDNQLASLP-TLPSELYKL---WAYNNRLTSLPA 218

Query: 282 GAFADLHAITHLAIGGNPL 300
                   +  L + GN L
Sbjct: 219 ----LPSGLKELIVSGNRL 233

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 63.5 bits (155), Expect = 5e-12
 Identities = 22/80 (27%), Positives = 38/80 (47%), Gaps = 3/80 (3%)

Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPE 281
           D S+N+I  L  F    L +L  L+++ N++  I       L  L  + L  N +  + +
Sbjct: 48  DFSDNEIRKLDGF--PLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGD 105

Query: 282 -GAFADLHAITHLAIGGNPL 300
               A L ++T+L I  NP+
Sbjct: 106 LDPLASLKSLTYLCILRNPV 125

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 55.4 bits (134), Expect = 4e-09
 Identities = 19/77 (24%), Positives = 35/77 (45%), Gaps = 3/77 (3%)

Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPE 281
           DL   +I  + N   + L +   +  S N+++ +  D    L+ L+ + ++ N I  I E
Sbjct: 25  DLRGYKIPVIENLG-ATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGE 81

Query: 282 GAFADLHAITHLAIGGN 298
           G    L  +T L +  N
Sbjct: 82  GLDQALPDLTELILTNN 98

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 53.5 bits (129), Expect = 1e-08
 Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 1/61 (1%)

Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCI-DRDALAGLKSLRIISLHGNDISMIP 280
            ++NN+I  +       L  L++LIL+ N L  + D D LA LKSL  + +  N ++   
Sbjct: 70  LVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKK 129

Query: 281 E 281
            
Sbjct: 130 H 130

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 40.0 bits (94), Expect = 6e-04
 Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 1/40 (2%)

Query: 118 TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIED 157
             L++N+N I +I  +GL   LP+L +L L  N +  + D
Sbjct: 67  KTLLVNNNRICRI-GEGLDQALPDLTELILTNNSLVELGD 105

>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell adhesion, DI mutation, glycoprotein, HOST-virus interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo sapiens} PDB: 3ije_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B* Length = 690

 Score = 67.8 bits (165), Expect = 5e-12
 Identities = 36/198 (18%), Positives = 48/198 (24%), Gaps = 48/198 (24%)

Query: 364 SPCTNQGVCEPLPERQYQCRCTPGYHGQHCE-------FMIDACYGNPCRNSGTCKLLEE 416
             C+ +G C        QC C     G+          F      G  C   G C     
Sbjct: 493 PVCSQRGECLC-----GQCVCHSSDFGKITGKYCECDDFSCVRYKGEMCSGHGQC---SC 544

Query: 417 GRFNCECAPGYTGDRCEINIDDCL-----SHKCENNATCVDLIQAYECRC-APGFQGEFC 470
           G   C C   +TG  C                C     C        C C  PG  G+ C
Sbjct: 545 GD--CLCDSDWTGYYCNCTTRTDTCMSSNGLLCSGRGKCEC----GSCVCIQPGSYGDTC 598

Query: 471 QTKTPFCAGEYNPCRNGARCLDHFSHYTCECTPGFSGVNCTVNVDDCVNHMCQNGGTCVD 530
           +     C    + C     C         EC     G       ++  N  C++    V 
Sbjct: 599 EK----CPTCPDACTFKKEC--------VECKKFDRGALHD---ENTCNRYCRDEIESVK 643

Query: 531 GINDYTCKCEGDFVGKFC 548
                    +       C
Sbjct: 644 ------ELKDTGKDAVNC 655

>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell adhesion, DI mutation, glycoprotein, HOST-virus interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo sapiens} PDB: 3ije_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B* Length = 690

 Score = 66.6 bits (162), Expect = 1e-11
 Identities = 50/269 (18%), Positives = 72/269 (26%), Gaps = 55/269 (20%)

Query: 345 QCKEKVSDEILSKCNACYKSPCTNQGVCEPLPERQYQCRCTPGYHGQHCEFMIDACYGNP 404
           +  + VS  I +K   C   P   +      P                C     A   + 
Sbjct: 390 KIGDTVSFSIEAKVRGC---PQEKEKSFTIKPVGFKDSLIVQVTFDCDCACQAQAEPNSH 446

Query: 405 CRNSGTCKLLEEGRFNCECAPGYTGDRCEINIDDCLSHK------------CENNATCVD 452
             N+G           C C PG+ G +CE + +D    +            C     C+ 
Sbjct: 447 RCNNGNGTF---ECGVCRCGPGWLGSQCECSEEDYRPSQQDECSPREGQPVCSQRGECLC 503

Query: 453 LIQAYECRCAPGFQGEFCQTKTPFCAGEYNPCRNGARCLDHF--SHYTCECTPGFSGVNC 510
                +C C     G+        C         G  C  H   S   C C   ++G  C
Sbjct: 504 ----GQCVCHSSDFGKITGKYCE-CDDFSCVRYKGEMCSGHGQCSCGDCLCDSDWTGYYC 558

Query: 511 --TVNVDDCVNH---MCQNGGTCVDGINDYTCKC-EGDFVGKFCEIAPFVAMMYPQTSPC 564
             T   D C++    +C   G C  G    +C C +    G  CE  P           C
Sbjct: 559 NCTTRTDTCMSSNGLLCSGRGKCECG----SCVCIQPGSYGDTCEKCP----------TC 604

Query: 565 QHHDCKNGICFQPQGSNDYLCKCAPGYSG 593
                    C           +C     G
Sbjct: 605 PDACTFKKEC----------VECKKFDRG 623

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 64.2 bits (157), Expect = 4e-11
 Identities = 40/207 (19%), Positives = 71/207 (34%), Gaps = 38/207 (18%)

Query: 97  TRVDCSQRGLKEIPKDIP-LYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGI 155
           T +      LK++P     L    ++  +N + ++        LP L  +    N +  +
Sbjct: 198 TAIYADNNSLKKLPDLPLSL--ESIVAGNNILEELPE---LQNLPFLTTIYADNNLLKTL 252

Query: 156 EDNAFEGENDQGCLGDNY--CPPKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGN 213
            D     E     + DNY    P+   ++  L             E   S +        
Sbjct: 253 PDLPPSLEALN--VRDNYLTDLPELPQSLTFL----------DVSENIFSGLS------E 294

Query: 214 YPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHG 273
            P +  Y + S+N+I  L +        L +L +S NKL  +     A    L  +    
Sbjct: 295 LPPNLYYLNASSNEIRSLCDL----PPSLEELNVSNNKLIELP----ALPPRLERLIASF 346

Query: 274 NDISMIPEGAFADLHAITHLAIGGNPL 300
           N ++ +PE        +  L +  NPL
Sbjct: 347 NHLAEVPEL----PQNLKQLHVEYNPL 369

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 60.8 bits (148), Expect = 5e-10
 Identities = 32/195 (16%), Positives = 57/195 (29%), Gaps = 49/195 (25%)

Query: 106 LKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGEND 165
           +  +   +     EL LN+  +  +         P+L  L    N +T + +        
Sbjct: 62  VSRLRDCLDRQAHELELNNLGLSSLPEL-----PPHLESLVASCNSLTELPEL------- 109

Query: 166 QGCLGDNYCPPKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSN 225
                    P                        L      +   + + P    Y  +SN
Sbjct: 110 ---------PQSLK-------------------SLLVDNNNLK-ALSDLPPLLEYLGVSN 140

Query: 226 NQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFA 285
           NQ+  L        S L  + +  N L+ +         SL  I+   N +  +PE    
Sbjct: 141 NQLEKLPE--LQNSSFLKIIDVDNNSLKKLP----DLPPSLEFIAAGNNQLEELPE--LQ 192

Query: 286 DLHAITHLAIGGNPL 300
           +L  +T +    N L
Sbjct: 193 NLPFLTAIYADNNSL 207

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 58.1 bits (141), Expect = 4e-09
 Identities = 20/207 (9%), Positives = 54/207 (26%), Gaps = 62/207 (29%)

Query: 110 PKDIPL-YTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGC 168
           P+++   +  E + + + + ++  +     + +  +     ++           + +   
Sbjct: 5   PRNVSNTFLQEPLRHSSNLTEMPVE--AENVKSKTEYYNAWSEWERNAPPGNGEQREMAV 62

Query: 169 LGDNYCPPKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQI 228
                C  +       L                                    +L+N  +
Sbjct: 63  SRLRDCLDR---QAHEL------------------------------------ELNNLGL 83

Query: 229 GFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEG------ 282
             L          L  L+ S N L  +  +    LKSL + + +   +S +P        
Sbjct: 84  SSLPEL----PPHLESLVASCNSLTELP-ELPQSLKSLLVDNNNLKALSDLPPLLEYLGV 138

Query: 283 ---------AFADLHAITHLAIGGNPL 300
                       +   +  + +  N L
Sbjct: 139 SNNQLEKLPELQNSSFLKIIDVDNNSL 165

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 57.7 bits (140), Expect = 5e-09
 Identities = 29/221 (13%), Positives = 58/221 (26%), Gaps = 89/221 (40%)

Query: 97  TRVDCSQRGLKEIPKDIP-LYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGI 155
           T +D S+     + +  P L    L  + NEI       L    P+L +L++  N++  +
Sbjct: 280 TFLDVSENIFSGLSELPPNL--YYLNASSNEIRS-----LCDLPPSLEELNVSNNKLIEL 332

Query: 156 EDNAFEGENDQGCLGDNYCPPKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYP 215
                               P     +  L                              
Sbjct: 333 --------------------PALPPRLERL------------------------------ 342

Query: 216 VSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLK----------- 264
                   S N +  +          L QL + YN L+    D    ++           
Sbjct: 343 ------IASFNHLAEVPEL----PQNLKQLHVEYNPLREFP-DIPESVEDLRMNSHLAEV 391

Query: 265 -----SLRIISLHGNDISMIPEGAFADLHAITHLAIGGNPL 300
                +L+ + +  N +   P+       ++  L +    +
Sbjct: 392 PELPQNLKQLHVETNPLREFPDI----PESVEDLRMNSERV 428

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 57.7 bits (140), Expect = 6e-09
 Identities = 16/79 (20%), Positives = 29/79 (36%), Gaps = 10/79 (12%)

Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPE 281
           D+ NN +  L +        L  +    N+L+ +    L  L  L  I    N +  +P+
Sbjct: 159 DVDNNSLKKLPDL----PPSLEFIAAGNNQLEELP--ELQNLPFLTAIYADNNSLKKLPD 212

Query: 282 GAFADLHAITHLAIGGNPL 300
                  ++  +  G N L
Sbjct: 213 L----PLSLESIVAGNNIL 227

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 46.9 bits (112), Expect = 1e-05
 Identities = 11/60 (18%), Positives = 23/60 (38%), Gaps = 6/60 (10%)

Query: 97  TRVDCSQRGLKEIPKDIP-LYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGI 155
             +D     LK++P   P L    +   +N++ ++        LP L  +    N +  +
Sbjct: 156 KIIDVDNNSLKKLPDLPPSL--EFIAAGNNQLEELPE---LQNLPFLTAIYADNNSLKKL 210

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 43.8 bits (104), Expect = 1e-04
 Identities = 10/60 (16%), Positives = 26/60 (43%), Gaps = 5/60 (8%)

Query: 97  TRVDCSQRGLKEIPKDIP-LYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGI 155
             ++ +  GL  +P+  P L    L+ + N + ++    L   L +L+  +     ++ +
Sbjct: 74  HELELNNLGLSSLPELPPHL--ESLVASCNSLTELPE--LPQSLKSLLVDNNNLKALSDL 129

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 63.0 bits (153), Expect = 7e-11
 Identities = 41/200 (20%), Positives = 69/200 (34%), Gaps = 36/200 (18%)

Query: 106 LKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGEND 165
           L E+ + +      L +         S       P L  LDL  N   G           
Sbjct: 140 LAELQQWLKPGLKVLSIAQAHSLNF-SCEQVRVFPALSTLDLSDNPELGER--------- 189

Query: 166 QGCLGDNYCPPKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYR---- 221
              L    CP K   T++VL              L ++ +     V +   +   +    
Sbjct: 190 --GLISALCPLKFP-TLQVLA-------------LRNAGMETPSGVCSALAAARVQLQGL 233

Query: 222 DLSNNQI-GFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIP 280
           DLS+N +       +    S+L+ L LS+  L+ + +   A L  L    L  N +   P
Sbjct: 234 DLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLPAKLSVL---DLSYNRLDRNP 290

Query: 281 EGAFADLHAITHLAIGGNPL 300
             +  +L  + +L++ GNP 
Sbjct: 291 --SPDELPQVGNLSLKGNPF 308

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 53.0 bits (127), Expect = 1e-07
 Identities = 29/199 (14%), Positives = 50/199 (25%), Gaps = 47/199 (23%)

Query: 118 TELILNDNEI-GKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDNYCPP 176
            EL L + E+ G      L    P+L  L+LR       +    E               
Sbjct: 98  QELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAE------------LQQ 145

Query: 177 KCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYR-------DLSNNQI- 228
                ++VL              +  +          +    +         DLS+N   
Sbjct: 146 WLKPGLKVL-------------SIAQAHSLN------FSCEQVRVFPALSTLDLSDNPEL 186

Query: 229 ---GFLSNFTFSPLSKLSQLILSYNKLQCIDRDA---LAGLKSLRIISLHGNDIS-MIPE 281
              G +S         L  L L    ++          A    L+ + L  N +      
Sbjct: 187 GERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGA 246

Query: 282 GAFADLHAITHLAIGGNPL 300
            +      +  L +    L
Sbjct: 247 PSCDWPSQLNSLNLSFTGL 265

>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET: NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A* Length = 1245

 Score = 64.5 bits (156), Expect = 7e-11
 Identities = 30/275 (10%), Positives = 60/275 (21%), Gaps = 53/275 (19%)

Query: 359 NACYKSPCTNQGVCEPLPERQYQCRCTPGYHGQHCEFMIDACYGNPCRNSGTCKLLEEGR 418
            +    P  +  V              P   G       +   G  C N G C ++++  
Sbjct: 160 QSSLALPVDSGEVK--------LDDEPPNSGGGSPCEAGEEGEGGVCLNGGVCSVVDDQ- 210

Query: 419 FNCEC-APGYTGDRCEINIDDCLSHKCENNATCVDLIQAYECRCAPGFQGEF-------- 469
             C+C   G+ G  C    ++ ++    +   C DL Q      +      F        
Sbjct: 211 AVCDCSRTGFRGKDCSQGKEEYIATFKGSEYFCYDLSQNPIQSSSDEITLSFKTLQRNGL 270

Query: 470 ---CQTKTPFCAGE---------YNPCRNGARCLDHFSHYT------CECTPGFSGVNCT 511
                    +              N        L    +         +     +    T
Sbjct: 271 MLHTGKSADYVNLALKNGAVSLVINLGSGAFEALVEPVNGKFNDNAWHDVKVTRNLRQVT 330

Query: 512 VNVDDCVNHMCQNGGT--------------CVDGINDYTCKCEGDFVGKFCEIAPFVAMM 557
           ++VD  +                            +        +F+G  C +   V   
Sbjct: 331 ISVDGILTTTGYTQEDYTMLGSDDFFYVGGSPSTADLPGSPVSNNFMG--C-LKEVVYKN 387

Query: 558 YPQTSPCQHHDCKNGICFQPQGSNDYLCKCAPGYS 592
                       +     +  G   + C+      
Sbjct: 388 NDVRLELSRLAKQGDPKMKIHGVVAFKCENVATLD 422

>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET: NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A* Length = 1245

 Score = 62.9 bits (152), Expect = 2e-10
 Identities = 16/126 (12%), Positives = 31/126 (24%), Gaps = 11/126 (8%)

Query: 382 CRCTPGYHGQHCEFMIDACYGNPCRNSGTCKLLEEGRFNCECAPGYTGDRCEINIDDCLS 441
            R    + G   +  + +    P  +              +  P   G       ++   
Sbjct: 144 VREREPFKGWIRDVRVQSSLALPVDSGEVK--------LDDEPPNSGGGSPCEAGEEGEG 195

Query: 442 HKCENNATCVDLIQAYECRC-APGFQGEFCQTKTPFCAGEYNPCRNGARCLDHFSHYTCE 500
             C N   C  +     C C   GF+G+ C               +   C D   +    
Sbjct: 196 GVCLNGGVCSVVDDQAVCDCSRTGFRGKDCSQGKEEY--IATFKGSEYFCYDLSQNPIQS 253

Query: 501 CTPGFS 506
            +   +
Sbjct: 254 SSDEIT 259

>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET: NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A* Length = 1245

 Score = 58.7 bits (141), Expect = 5e-09
 Identities = 27/162 (16%), Positives = 43/162 (26%), Gaps = 30/162 (18%)

Query: 445 ENNATCVDLIQAYECRCAPGFQGEFCQTKTPFCAGEYNPCRNGARCLDHFSHYTCECTPG 504
                    +     R    F+G     +    +    P  +G   LD          P 
Sbjct: 130 PELRAAALKLTLASVREREPFKGWIRDVR--VQSSLALPVDSGEVKLDD-------EPPN 180

Query: 505 FSGVNCTVNVDDCVNHMCQNGGTCVDGINDYTCKCEG-DFVGKFCEIAPFVAMMYPQTSP 563
             G +     ++    +C NGG C    +   C C    F GK C       +   + S 
Sbjct: 181 SGGGSPCEAGEEGEGGVCLNGGVCSVVDDQAVCDCSRTGFRGKDCSQGKEEYIATFKGSE 240

Query: 564 CQHHDC--------------------KNGICFQPQGSNDYLC 585
              +D                     +NG+      S DY+ 
Sbjct: 241 YFCYDLSQNPIQSSSDEITLSFKTLQRNGLMLHTGKSADYVN 282

>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET: NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A* Length = 1245

 Score = 47.9 bits (113), Expect = 1e-05
 Identities = 32/222 (14%), Positives = 60/222 (27%), Gaps = 17/222 (7%)

Query: 381 QCRCTPGYHGQHCEFMIDACYGNPCRNSGTCKLLEEGRFNCEC-APGYTGDRCEINIDDC 439
           + + T G            C  NPC+N+G C+      + C+C   GY G  CE      
Sbjct: 603 EVQSTAGVKPSCSRETAKPCLSNPCKNNGMCRDGWNR-YVCDCSGTGYLGRSCE----RE 657

Query: 440 LSHKCENNATCVDLIQAYECRCAPGFQGEFCQTKTPFCAGEYNPCRNGARCL-----DHF 494
            +    + +  + +                 +++  +        R+ A  L        
Sbjct: 658 ATVLSYDGSMFMKIQLPVVMHTEAEDVSLRFRSQRAYGILMATTSRDSADTLRLELDAGR 717

Query: 495 SHYTCECTPGFSGVNCTVNVDDCVNHMC------QNGGTCVDGINDYTCKCEGDFVGKFC 548
              T     G   +    N++D   H        ++    VD     T +  GD      
Sbjct: 718 VKLTVNLGKGPETLFAGYNLNDNEWHTVRVVRRGKSLKLTVDDQQAMTGQMAGDHTRLEF 777

Query: 549 EIAPFVAMMYPQTSPCQHHDCKNGICFQPQGSNDYLCKCAPG 590
                  +   +       +    +         Y+  C  G
Sbjct: 778 HNIETGIITERRYLSSVPSNFIGHLQSLTFNGMAYIDLCKNG 819

>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET: NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A* Length = 1245

 Score = 44.4 bits (104), Expect = 1e-04
 Identities = 41/345 (11%), Positives = 80/345 (23%), Gaps = 55/345 (15%)

Query: 281 EGAFADLHAITHLAIGGNPLYCDCGLAWLSEWVKRDYVEPGIARCTEPASMRDKLLLTAP 340
           +    D+   + L +GG P         L+    R               ++  L L   
Sbjct: 111 KSKRRDMTVFSGLFVGGLPPELRAAALKLTLASVR--EREPFKGWIRDVRVQSSLALPVD 168

Query: 341 ASSFQCKEKVSDEILSKC----NACYKSPCTNQGVCEPLPERQYQCRCT-PGYHGQHCEF 395
           +   +  ++  +                 C N GVC  + + Q  C C+  G+ G+ C  
Sbjct: 169 SGEVKLDDEPPNSGGGSPCEAGEEGEGGVCLNGGVCSVV-DDQAVCDCSRTGFRGKDCSQ 227

Query: 396 MIDACYGNPCRNSGTCKLLEEGRFNCE-----------------CAPGYTGDRCEINIDD 438
             +        +   C  L +                          G + D   + + +
Sbjct: 228 GKEEYIATFKGSEYFCYDLSQNPIQSSSDEITLSFKTLQRNGLMLHTGKSADYVNLALKN 287

Query: 439 ---CLSHKCENNATCVDLIQA-------YECRCAPGFQGEF-------CQTKTPFCAGEY 481
               L     + A    +                                T T +   +Y
Sbjct: 288 GAVSLVINLGSGAFEALVEPVNGKFNDNAWHDVKVTRNLRQVTISVDGILTTTGYTQEDY 347

Query: 482 NPCRNGAR-----CLDHFSHYTCECTPGFSG-----VNCTVNVDDCVNHMCQNGGTCVDG 531
               +                    +  F G     V    +V   ++ + + G   +  
Sbjct: 348 TMLGSDDFFYVGGSPSTADLPGSPVSNNFMGCLKEVVYKNNDVRLELSRLAKQGDPKMKI 407

Query: 532 INDYTCKCEGDFVGKFCEIAPFVAMMYPQTSPCQHHDCKNGICFQ 576
                 KCE        +   F       + P  +      I F 
Sbjct: 408 HGVVAFKCEN---VATLDPITFETPESFISLPKWNAKKTGSISFD 449

>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET: NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A* Length = 1245

 Score = 44.1 bits (103), Expect = 1e-04
 Identities = 91/677 (13%), Positives = 157/677 (23%), Gaps = 124/677 (18%)

Query: 1   NGGTCVDGINDYTCKCEG-DFVGKFCEIAPFVAMMYPQTSPCQHHDC------------- 46
           NGG C    +   C C    F GK C       +   + S    +D              
Sbjct: 200 NGGVCSVVDDQAVCDCSRTGFRGKDCSQGKEEYIATFKGSEYFCYDLSQNPIQSSSDEIT 259

Query: 47  -------KNGICFQPQGSNDYLC-KCAPGY--------SGVEEFRTRYAGDCLIDAACPS 90
                  +NG+      S DY+      G         SG  E           D A   
Sbjct: 260 LSFKTLQRNGLMLHTGKSADYVNLALKNGAVSLVINLGSGAFEALVEPVNGKFNDNAW-- 317

Query: 91  GCSCDGTR--------VD-------CSQRGLKEIPKDIPLYTTELILNDNEIGKIKSDGL 135
                 TR        VD        +Q     +  D   Y        +  G   S+  
Sbjct: 318 -HDVKVTRNLRQVTISVDGILTTTGYTQEDYTMLGSDDFFYVGGSPSTADLPGSPVSNNF 376

Query: 136 FGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDNYCPPKCTCTVRVLFYDGRAGECY 195
            G L  ++     +N    +E +    + D           KC     +        E +
Sbjct: 377 MGCLKEVV----YKNNDVRLELSRLAKQGDPKMKIHGVVAFKCENVATLDPITFETPESF 432

Query: 196 IAVELFSSRIRVS---------------YYVGNYPVSTMYRDLSNNQIGFLS-------- 232
           I++  ++++   S               +  G        +     ++ F +        
Sbjct: 433 ISLPKWNAKKTGSISFDFRTTEPNGLILFSHGKPRHQKDAKHPQMIKVDFFAIEMLDGHL 492

Query: 233 NFTFSPLSKLSQLILSYNKLQ-------CIDRDALAGLKSLRIISLHGNDISMIPEGAFA 285
                  S   ++     K+           RD  +G      IS++         G   
Sbjct: 493 YLLLDMGSGTIKIKALQKKVNDGEWYHVDFQRDGRSG-----TISVNTLRTPYTAPGESE 547

Query: 286 DLHAITHLAIGGNPLYCDCGLAWLSEWVKRDYVEPGIARCTEPASMRDKLLLTAPASSFQ 345
            L     L +GG P   +         V    +  G   C     +  +       +  Q
Sbjct: 548 ILDLDDELYLGGLPE--NKAGLVFPTEVWTALLNYGYVGCIRDLFIDGQSKDIRQMAEVQ 605

Query: 346 CKEKVSDEILSKC-NACYKSPCTNQGVCEPLPERQYQCRCTP-GYHGQHCEFMIDACYGN 403
               V      +    C  +PC N G+C     R Y C C+  GY G+ CE        +
Sbjct: 606 STAGVKPSCSRETAKPCLSNPCKNNGMCRDGWNR-YVCDCSGTGYLGRSCEREATVLSYD 664

Query: 404 PCRNSGTCKLLE--------EGRFNCECAPGY--------TGDRCEINIDDC---LSHKC 444
                     +           RF  + A G         + D   + +D     L+   
Sbjct: 665 GSMFMKIQLPVVMHTEAEDVSLRFRSQRAYGILMATTSRDSADTLRLELDAGRVKLTVNL 724

Query: 445 ENNAT------CVDLIQAYECRCAPGFQ-------GEFCQTKTPFCAGEYNPCRNGARCL 491
                       ++  + +  R     +        +   T             N    +
Sbjct: 725 GKGPETLFAGYNLNDNEWHTVRVVRRGKSLKLTVDDQQAMTGQMAGDHTRLEFHNIETGI 784

Query: 492 DHFSHYTCECTPGFSGVNCTVNVDDCVNHMCQNGGTCVDGINDYTCKCEGDFVGKFCEIA 551
                Y       F G   ++  +          G       +                 
Sbjct: 785 ITERRYLSSVPSNFIGHLQSLTFNGMAYIDLCKNGDIDYCELNARFGFRNIIADPVTFKT 844

Query: 552 PFVAMMYPQTSPCQHHD 568
               +            
Sbjct: 845 KSSYVALATLQAYTSMH 861

>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET: NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A* Length = 1245

 Score = 42.5 bits (99), Expect = 4e-04
 Identities = 12/55 (21%), Positives = 21/55 (38%), Gaps = 3/55 (5%)

Query: 470  CQTKTPFCAGEYNPCRNGARCLDHFSHYTCECT-PGFSGVNCTVNVDDCVNHMCQ 523
            C+  +  C    + C N   CL  +  ++C+C+   FSG  C       +     
Sbjct: 1013 CEGPSTTCQE--DSCSNQGVCLQQWDGFSCDCSMTSFSGPLCNDPGTTYIFSKGG 1065

>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET: NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A* Length = 1245

 Score = 42.1 bits (98), Expect = 5e-04
 Identities = 12/62 (19%), Positives = 17/62 (27%), Gaps = 1/62 (1%)

Query: 502  TPGFSGVNCTVNVDDCVNHMCQNGGTCVDGINDYTCKCEG-DFVGKFCEIAPFVAMMYPQ 560
              G     C      C    C N G C+   + ++C C    F G  C       +    
Sbjct: 1005 CNGQIERGCEGPSTTCQEDSCSNQGVCLQQWDGFSCDCSMTSFSGPLCNDPGTTYIFSKG 1064

Query: 561  TS 562
              
Sbjct: 1065 GG 1066

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 60.1 bits (146), Expect = 8e-11
 Identities = 19/80 (23%), Positives = 31/80 (38%), Gaps = 3/80 (3%)

Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPE 281
            L N  +  +SN     L KL +L LS N++          L +L  ++L GN +  I  
Sbjct: 55  SLINVGLISVSNL--PKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDIST 112

Query: 282 -GAFADLHAITHLAIGGNPL 300
                 L  +  L +    +
Sbjct: 113 LEPLKKLECLKSLDLFNCEV 132

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 52.8 bits (127), Expect = 2e-08
 Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 1/61 (1%)

Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCI-DRDALAGLKSLRIISLHGNDISMIP 280
           +LS N+I    +     L  L+ L LS NKL+ I   + L  L+ L+ + L   +++ + 
Sbjct: 77  ELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLN 136

Query: 281 E 281
           +
Sbjct: 137 D 137

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 61.6 bits (150), Expect = 1e-10
 Identities = 34/206 (16%), Positives = 63/206 (30%), Gaps = 67/206 (32%)

Query: 97  TRVDCSQRGLKEIPKDIPLYT--TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTG 154
              +     ++ +   +  +T   EL L+ N+I  +        L  L +L + RN++  
Sbjct: 44  QNFNGDNSNIQSL-AGMQFFTNLKELHLSHNQISDLSP---LKDLTKLEELSVNRNRLKN 99

Query: 155 IEDNAFEGENDQGCLGDNYCPPKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNY 214
           +                          +  LF             L ++ +         
Sbjct: 100 LNGIPS-------------------ACLSRLF-------------LDNNEL--------- 118

Query: 215 PVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGN 274
                 RD  +     L +     L  L  L +  NKL+ I    L  L  L ++ LHGN
Sbjct: 119 ------RDTDS-----LIH-----LKNLEILSIRNNKLKSI--VMLGFLSKLEVLDLHGN 160

Query: 275 DISMIPEGAFADLHAITHLAIGGNPL 300
           +I+         L  +  + + G   
Sbjct: 161 EITNTGG--LTRLKKVNWIDLTGQKC 184

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 60.8 bits (148), Expect = 2e-10
 Identities = 24/89 (26%), Positives = 41/89 (46%), Gaps = 7/89 (7%)

Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPE 281
            ++ N++  L+       + LS+L L  N+L+  D  +L  LK+L I+S+  N +  I  
Sbjct: 91  SVNRNRLKNLNGIP---SACLSRLFLDNNELRDTD--SLIHLKNLEILSIRNNKLKSIV- 144

Query: 282 GAFADLHAITHLAIGGNPLYCDCGLAWLS 310
                L  +  L + GN +    GL  L 
Sbjct: 145 -MLGFLSKLEVLDLHGNEITNTGGLTRLK 172

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 58.1 bits (141), Expect = 2e-09
 Identities = 15/79 (18%), Positives = 30/79 (37%), Gaps = 6/79 (7%)

Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPE 281
           +L    +  L +     LS +       + +Q +    +    +L+ + L  N IS +  
Sbjct: 25  NLGKQSVTDLVSQ--KELSGVQNFNGDNSNIQSL--AGMQFFTNLKELHLSHNQISDLS- 79

Query: 282 GAFADLHAITHLAIGGNPL 300
               DL  +  L++  N L
Sbjct: 80  -PLKDLTKLEELSVNRNRL 97

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 55.4 bits (134), Expect = 1e-08
 Identities = 31/182 (17%), Positives = 56/182 (30%), Gaps = 64/182 (35%)

Query: 119 ELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDNYCPPKC 178
           E I     I ++  D     L N +K +L +  VT +                     + 
Sbjct: 1   ESIQRPTPINQVFPDP---GLANAVKQNLGKQSVTDLVSQK-----------------EL 40

Query: 179 TCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSNFTFSP 238
           +  V+                  +S I               + L+      +  FT   
Sbjct: 41  S-GVQNF-------------NGDNSNI---------------QSLAG-----MQFFT--- 63

Query: 239 LSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIGGN 298
              L +L LS+N++  +    L  L  L  +S++ N +  +     A L   + L +  N
Sbjct: 64  --NLKELHLSHNQISDL--SPLKDLTKLEELSVNRNRLKNLNGIPSACL---SRLFLDNN 116

Query: 299 PL 300
            L
Sbjct: 117 EL 118

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 62.4 bits (152), Expect = 2e-10
 Identities = 17/79 (21%), Positives = 35/79 (44%), Gaps = 8/79 (10%)

Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPE 281
           D  N+ I  ++      L+ L++LI + N +  +D   L+   +L  ++   N ++ +  
Sbjct: 48  DCHNSSITDMTGIEK--LTGLTKLICTSNNITTLD---LSQNTNLTYLACDSNKLTNLD- 101

Query: 282 GAFADLHAITHLAIGGNPL 300
                L  +T+L    N L
Sbjct: 102 --VTPLTKLTYLNCDTNKL 118

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 60.9 bits (148), Expect = 5e-10
 Identities = 20/183 (10%), Positives = 52/183 (28%), Gaps = 46/183 (25%)

Query: 118 TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDNYCPPK 177
           T L  + N++ +I        L  L   D   N +T ++ +          L   +C   
Sbjct: 215 TFLDCSSNKLTEID----VTPLTQLTYFDCSVNPLTELDVSTLSK------LTTLHC--- 261

Query: 178 CTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSNFTFS 237
                          +  +        I +++       +T            +     +
Sbjct: 262 --------------IQTDL------LEIDLTH-------NTQLIYFQAEGCRKIKELDVT 294

Query: 238 PLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIGG 297
             ++L  L      +  +D   L+    L  + L+  +++ +     +    +  L+   
Sbjct: 295 HNTQLYLLDCQAAGITELD---LSQNPKLVYLYLNNTELTELD---VSHNTKLKSLSCVN 348

Query: 298 NPL 300
             +
Sbjct: 349 AHI 351

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 60.5 bits (147), Expect = 8e-10
 Identities = 18/79 (22%), Positives = 29/79 (36%), Gaps = 9/79 (11%)

Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPE 281
           D S N+I   +    S    L++L    N +  +D   L     L  +    N ++ I  
Sbjct: 176 DCSFNKI---TELDVSQNKLLNRLNCDTNNITKLD---LNQNIQLTFLDCSSNKLTEID- 228

Query: 282 GAFADLHAITHLAIGGNPL 300
                L  +T+     NPL
Sbjct: 229 --VTPLTQLTYFDCSVNPL 245

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 60.1 bits (146), Expect = 1e-09
 Identities = 16/79 (20%), Positives = 31/79 (39%), Gaps = 9/79 (11%)

Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPE 281
             ++N I   +    S  + L+ L    NKL  +D   +  L  L  ++   N ++ +  
Sbjct: 70  ICTSNNI---TTLDLSQNTNLTYLACDSNKLTNLD---VTPLTKLTYLNCDTNKLTKLD- 122

Query: 282 GAFADLHAITHLAIGGNPL 300
              +    +T+L    N L
Sbjct: 123 --VSQNPLLTYLNCARNTL 139

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 58.2 bits (141), Expect = 4e-09
 Identities = 13/79 (16%), Positives = 24/79 (30%), Gaps = 8/79 (10%)

Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPE 281
           D     I   +    S   KL  L L+  +L  +D   ++    L+ +S     I     
Sbjct: 303 DCQAAGI---TELDLSQNPKLVYLYLNNTELTELD---VSHNTKLKSLSCVNAHIQDFSS 356

Query: 282 GAFADLHAITHLAIGGNPL 300
                + A+ +        
Sbjct: 357 --VGKIPALNNNFEAEGQT 373

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 58.2 bits (141), Expect = 4e-09
 Identities = 17/79 (21%), Positives = 35/79 (44%), Gaps = 8/79 (10%)

Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPE 281
           D   N+   ++    +P ++L+ L  S+NK+  +D   ++  K L  ++   N+I+ +  
Sbjct: 154 DCHLNKK--ITKLDVTPQTQLTTLDCSFNKITELD---VSQNKLLNRLNCDTNNITKLD- 207

Query: 282 GAFADLHAITHLAIGGNPL 300
                   +T L    N L
Sbjct: 208 --LNQNIQLTFLDCSSNKL 224

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 54.7 bits (132), Expect = 5e-08
 Identities = 18/79 (22%), Positives = 33/79 (41%), Gaps = 9/79 (11%)

Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPE 281
              +N+   L+N   +PL+KL+ L    NKL  +D   ++    L  ++   N ++ I  
Sbjct: 91  ACDSNK---LTNLDVTPLTKLTYLNCDTNKLTKLD---VSQNPLLTYLNCARNTLTEID- 143

Query: 282 GAFADLHAITHLAIGGNPL 300
              +    +T L    N  
Sbjct: 144 --VSHNTQLTELDCHLNKK 160

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 53.9 bits (130), Expect = 7e-08
 Identities = 15/79 (18%), Positives = 26/79 (32%), Gaps = 8/79 (10%)

Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPE 281
           +   N+   L+    S    L+ L  + N L  ID   ++    L  +  H N      +
Sbjct: 112 NCDTNK---LTKLDVSQNPLLTYLNCARNTLTEID---VSHNTQLTELDCHLNKKITKLD 165

Query: 282 GAFADLHAITHLAIGGNPL 300
                   +T L    N +
Sbjct: 166 --VTPQTQLTTLDCSFNKI 182

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 53.2 bits (128), Expect = 1e-07
 Identities = 12/78 (15%), Positives = 29/78 (37%), Gaps = 5/78 (6%)

Query: 223 LSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEG 282
            +  ++      +   L+ L+ L    + +  +    +  L  L  +    N+I+ +   
Sbjct: 25  AAAFEMQATDTISEEQLATLTSLDCHNSSITDM--TGIEKLTGLTKLICTSNNITTLD-- 80

Query: 283 AFADLHAITHLAIGGNPL 300
             +    +T+LA   N L
Sbjct: 81  -LSQNTNLTYLACDSNKL 97

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 42.4 bits (100), Expect = 4e-04
 Identities = 15/61 (24%), Positives = 25/61 (40%), Gaps = 7/61 (11%)

Query: 97  TRVDCSQRGLKEIPKDIPLYT--TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTG 154
           T +DC    + ++   I   T  T+LI   N I  +       +  NL  L    N++T 
Sbjct: 45  TSLDCHNSSITDMT-GIEKLTGLTKLICTSNNITTLD----LSQNTNLTYLACDSNKLTN 99

Query: 155 I 155
           +
Sbjct: 100 L 100

>1edm_B Factor IX; epidermal growth factor, EGF, calcium- binding, EGF-like domain, structure and function, coagulation factor; 1.50A {Homo sapiens} SCOP: g.3.11.1 PDB: 1ixa_A Length = 39

 Score = 55.2 bits (134), Expect = 2e-10
 Identities = 19/39 (48%), Positives = 24/39 (61%)

Query: 512 VNVDDCVNHMCQNGGTCVDGINDYTCKCEGDFVGKFCEI 550
           V+ D C ++ C NGG+C D IN Y C C   F GK CE+
Sbjct: 1   VDGDQCESNPCLNGGSCKDDINSYECWCPFGFEGKNCEL 39

>1edm_B Factor IX; epidermal growth factor, EGF, calcium- binding, EGF-like domain, structure and function, coagulation factor; 1.50A {Homo sapiens} SCOP: g.3.11.1 PDB: 1ixa_A Length = 39

 Score = 54.0 bits (131), Expect = 5e-10
 Identities = 16/38 (42%), Positives = 24/38 (63%)

Query: 434 INIDDCLSHKCENNATCVDLIQAYECRCAPGFQGEFCQ 471
           ++ D C S+ C N  +C D I +YEC C  GF+G+ C+
Sbjct: 1   VDGDQCESNPCLNGGSCKDDINSYECWCPFGFEGKNCE 38

>1edm_B Factor IX; epidermal growth factor, EGF, calcium- binding, EGF-like domain, structure and function, coagulation factor; 1.50A {Homo sapiens} SCOP: g.3.11.1 PDB: 1ixa_A Length = 39

 Score = 46.7 bits (112), Expect = 2e-07
 Identities = 15/29 (51%), Positives = 16/29 (55%)

Query: 482 NPCRNGARCLDHFSHYTCECTPGFSGVNC 510
           NPC NG  C D  + Y C C  GF G NC
Sbjct: 9   NPCLNGGSCKDDINSYECWCPFGFEGKNC 37

>1edm_B Factor IX; epidermal growth factor, EGF, calcium- binding, EGF-like domain, structure and function, coagulation factor; 1.50A {Homo sapiens} SCOP: g.3.11.1 PDB: 1ixa_A Length = 39

 Score = 46.7 bits (112), Expect = 2e-07
 Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 1/38 (2%)

Query: 397 IDACYGNPCRNSGTCKLLEEGRFNCECAPGYTGDRCEI 434
            D C  NPC N G+CK      + C C  G+ G  CE+
Sbjct: 3   GDQCESNPCLNGGSCKDDI-NSYECWCPFGFEGKNCEL 39

>1edm_B Factor IX; epidermal growth factor, EGF, calcium- binding, EGF-like domain, structure and function, coagulation factor; 1.50A {Homo sapiens} SCOP: g.3.11.1 PDB: 1ixa_A Length = 39

 Score = 42.9 bits (102), Expect = 4e-06
 Identities = 15/27 (55%), Positives = 17/27 (62%)

Query: 1  NGGTCVDGINDYTCKCEGDFVGKFCEI 27
          NGG+C D IN Y C C   F GK CE+
Sbjct: 13 NGGSCKDDINSYECWCPFGFEGKNCEL 39

>1edm_B Factor IX; epidermal growth factor, EGF, calcium- binding, EGF-like domain, structure and function, coagulation factor; 1.50A {Homo sapiens} SCOP: g.3.11.1 PDB: 1ixa_A Length = 39

 Score = 36.7 bits (86), Expect = 6e-04
 Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 1/37 (2%)

Query: 359 NACYKSPCTNQGVCEPLPERQYQCRCTPGYHGQHCEF 395
           + C  +PC N G C+      Y+C C  G+ G++CE 
Sbjct: 4   DQCESNPCLNGGSCKDDINS-YECWCPFGFEGKNCEL 39

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 57.0 bits (138), Expect = 6e-10
 Identities = 16/80 (20%), Positives = 30/80 (37%), Gaps = 3/80 (3%)

Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPE 281
              N  +  ++N     L+KL +L LS N++            +L  ++L GN I  +  
Sbjct: 48  STINVGLTSIANL--PKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLST 105

Query: 282 -GAFADLHAITHLAIGGNPL 300
                 L  +  L +    +
Sbjct: 106 IEPLKKLENLKSLDLFNCEV 125

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 51.6 bits (124), Expect = 4e-08
 Identities = 13/61 (21%), Positives = 31/61 (50%), Gaps = 1/61 (1%)

Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDR-DALAGLKSLRIISLHGNDISMIP 280
           +LS+N++             L+ L LS NK++ +   + L  L++L+ + L   +++ + 
Sbjct: 70  ELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLN 129

Query: 281 E 281
           +
Sbjct: 130 D 130

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 56.2 bits (136), Expect = 3e-09
 Identities = 23/81 (28%), Positives = 38/81 (46%), Gaps = 4/81 (4%)

Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPE 281
            L  N I  + N   +    L +L +SYN++  +    +  L +LR++ +  N I+   E
Sbjct: 76  SLGRNLIKKIENL-DAVADTLEELWISYNQIASLS--GIEKLVNLRVLYMSNNKITNWGE 132

Query: 282 -GAFADLHAITHLAIGGNPLY 301
               A L  +  L + GNPLY
Sbjct: 133 IDKLAALDKLEDLLLAGNPLY 153

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 46.6 bits (111), Expect = 5e-06
 Identities = 22/62 (35%), Positives = 31/62 (50%), Gaps = 3/62 (4%)

Query: 237 SPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIG 296
           S L     L LS N ++ I   +L+G+++LRI+SL  N I  I E   A    +  L I 
Sbjct: 45  STLKACKHLALSTNNIEKIS--SLSGMENLRILSLGRNLIKKI-ENLDAVADTLEELWIS 101

Query: 297 GN 298
            N
Sbjct: 102 YN 103

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 42.4 bits (100), Expect = 1e-04
 Identities = 15/60 (25%), Positives = 24/60 (40%), Gaps = 5/60 (8%)

Query: 100 DCSQRGLKEIPKDIPLYT--TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIED 157
                 ++++   +        L L+ N I KI    L   + NL  L L RN +  IE+
Sbjct: 31  HGMIPPIEKMDATLSTLKACKHLALSTNNIEKI--SSL-SGMENLRILSLGRNLIKKIEN 87

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 41.6 bits (98), Expect = 2e-04
 Identities = 13/78 (16%), Positives = 31/78 (39%), Gaps = 5/78 (6%)

Query: 223 LSNNQIGFLSNFTFSPLSKLS--QLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIP 280
              + I           ++    +L      ++ +D   L+ LK+ + ++L  N+I  I 
Sbjct: 6   TIKDAIRIFEERKSVVATEAEKVELHGMIPPIEKMD-ATLSTLKACKHLALSTNNIEKI- 63

Query: 281 EGAFADLHAITHLAIGGN 298
               + +  +  L++G N
Sbjct: 64  SS-LSGMENLRILSLGRN 80

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 58.4 bits (141), Expect = 4e-09
 Identities = 32/245 (13%), Positives = 61/245 (24%), Gaps = 105/245 (42%)

Query: 97  TRVDCSQRGLKEIPKDIPLYTTELILNDN-------EIGKIK----SDGLFGRLP----N 141
           + +  ++  L  +P ++P   T L +  N           ++     D     LP    +
Sbjct: 62  SELQLNRLNLSSLPDNLPPQITVLEITQNALISLPELPASLEYLDACDNRLSTLPELPAS 121

Query: 142 LIKLDLRRNQVTGIEDNAFEGENDQGCLGDNYCPPKCTCTVRVLFYDGRAGECYIAVELF 201
           L  LD+  NQ+T +                    P+    +  +                
Sbjct: 122 LKHLDVDNNQLTML--------------------PELPALLEYI---------------- 145

Query: 202 SSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALA 261
                      N            NQ+  L        + L  L +  N+L  +      
Sbjct: 146 --------NADN------------NQLTMLPEL----PTSLEVLSVRNNQLTFLP----E 177

Query: 262 GLKSLRIISLHGNDISMIPEG--------------------------AFADLHAITHLAI 295
             +SL  + +  N +  +P                                L     + +
Sbjct: 178 LPESLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRITHIPENILSLDPTCTIIL 237

Query: 296 GGNPL 300
             NPL
Sbjct: 238 EDNPL 242

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 51.9 bits (124), Expect = 4e-07
 Identities = 29/204 (14%), Positives = 53/204 (25%), Gaps = 70/204 (34%)

Query: 100 DCSQRGLKEIPKDIPLYTTEL---ILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIE 156
           +     +     D      +     L      +  S      +    +L L R  ++ + 
Sbjct: 16  NSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSELQLNRLNLSSLP 75

Query: 157 DNAFEGENDQGCLGDNYCPPKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPV 216
           DN          L            + VL                               
Sbjct: 76  DN----------LPPQ---------ITVL------------------------------- 85

Query: 217 STMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDI 276
                +++ N +  L        + L  L    N+L  +  +  A LK L    +  N +
Sbjct: 86  -----EITQNALISLPEL----PASLEYLDACDNRLSTL-PELPASLKHLD---VDNNQL 132

Query: 277 SMIPEGAFADLHAITHLAIGGNPL 300
           +M+PE   A L    ++    N L
Sbjct: 133 TMLPE-LPALL---EYINADNNQL 152

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 48.8 bits (116), Expect = 4e-06
 Identities = 15/116 (12%), Positives = 28/116 (24%), Gaps = 7/116 (6%)

Query: 222 DLSNNQIGFLSNFTFSPLSKLSQ----LILSYNKLQCIDRDALAGLKSLRIISLHGNDIS 277
           D+S N +  L            +         N++  I  + +  L     I L  N +S
Sbjct: 186 DVSTNLLESLPA-VPVRNHHSEETEIFFRCRENRITHI-PENILSLDPTCTIILEDNPLS 243

Query: 278 MIPEGAFADLHAITHLAIGGNPLYCDCGLAWLSEWVKRDYVEPGIARCTEPASMRD 333
                + +   A               G          D V        + + +  
Sbjct: 244 SRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRPLADAVTAWFP-ENKQSDVSQ 298

>1z1y_A Ookinete surface protein PVS25; four EGF-like domains, cell adhesion; HET: MLY; 2.00A {Plasmodium vivax} PDB: 1z27_A 1z3g_A Length = 186

 Score = 54.7 bits (130), Expect = 9e-09
 Identities = 34/184 (18%), Positives = 51/184 (27%), Gaps = 22/184 (11%)

Query: 358 CNACYKSPCTNQGVCEPLPERQYQCRCTPGYHGQHCEFMID------ACYGNPCRNSGTC 411
            +A         G    +    + C C  G          +         G  C   G C
Sbjct: 4   ASAVTVDTICXNGQLVQMS-NHFXCMCNEGLVHLSENTCEEXNECXXETLGXACGEFGQC 62

Query: 412 ----KLLEEGRFNCECAPGYTGDRCEINIDDCLSHKCENNA----TCVDLIQAYECRCAP 463
                  +   + C C  GYT       +D C    C  +       +  IQ+  C CA 
Sbjct: 63  IENPDPAQVNMYXCGCIEGYTLXEDTCVLDVCQYXNCGESGECIVEYLSEIQSAGCSCAI 122

Query: 464 GFQGEFCQ----TKTPFCAGEYNPCRNGARCLDHFSHYTCECTPGFSG---VNCTVNVDD 516
           G           T T   A +     +   C +    Y C+C  GF+     N  +    
Sbjct: 123 GXVPNPEDEXXCTXTGETACQLXCNTDNEVCXNVEGVYXCQCMEGFTFDXEXNVCLGPHH 182

Query: 517 CVNH 520
             +H
Sbjct: 183 HHHH 186

>1z1y_A Ookinete surface protein PVS25; four EGF-like domains, cell adhesion; HET: MLY; 2.00A {Plasmodium vivax} PDB: 1z27_A 1z3g_A Length = 186

 Score = 49.3 bits (116), Expect = 6e-07
 Identities = 29/163 (17%), Positives = 44/163 (26%), Gaps = 17/163 (10%)

Query: 444 CENNATCVDLIQAYECRCAPGFQG---------EFCQTKTPFCAGEYNPCRNGARCLDHF 494
              N   V +   + C C  G              C  +T   A                
Sbjct: 12  ICXNGQLVQMSNHFXCMCNEGLVHLSENTCEEXNECXXETLGXACGEFGQCIENPDPAQV 71

Query: 495 SHYTCECTPGFSGVNCTVNVDDCVNHMCQNGG----TCVDGINDYTCKCEGDFVGKFCEI 550
           + Y C C  G++    T  +D C    C   G      +  I    C C    V    + 
Sbjct: 72  NMYXCGCIEGYTLXEDTCVLDVCQYXNCGESGECIVEYLSEIQSAGCSCAIGXVPNPEDE 131

Query: 551 APFVAMMYPQTSPCQHHDCKNGICFQPQGSNDYLCKCAPGYSG 593
                          + D  N +C   +G   Y C+C  G++ 
Sbjct: 132 XXCTXTGETACQLXCNTD--NEVCXNVEGV--YXCQCMEGFTF 170

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 57.1 bits (137), Expect = 1e-08
 Identities = 14/61 (22%), Positives = 26/61 (42%), Gaps = 3/61 (4%)

Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDR-DALAGLKSLRIISLHGNDISMIP 280
             S+N +  +     + L +L +L+L  N+LQ       L     L +++L GN +    
Sbjct: 492 QASDNALENVDGV--ANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEE 549

Query: 281 E 281
            
Sbjct: 550 G 550

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 55.9 bits (134), Expect = 2e-08
 Identities = 19/79 (24%), Positives = 37/79 (46%), Gaps = 5/79 (6%)

Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPE 281
            L++  +  L +     L  ++ L LS+N+L+ +   ALA L+ L ++    N +  +  
Sbjct: 447 HLAHKDLTVLCHL--EQLLLVTHLDLSHNRLRALP-PALAALRCLEVLQASDNALENVDG 503

Query: 282 GAFADLHAITHLAIGGNPL 300
              A+L  +  L +  N L
Sbjct: 504 --VANLPRLQELLLCNNRL 520

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 42.8 bits (100), Expect = 2e-04
 Identities = 10/40 (25%), Positives = 19/40 (47%)

Query: 118 TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIED 157
            EL+L +N + +  +       P L+ L+L+ N +   E 
Sbjct: 511 QELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG 550

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 41.7 bits (97), Expect = 6e-04
 Identities = 13/57 (22%), Positives = 21/57 (36%), Gaps = 3/57 (5%)

Query: 244 QLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIGGNPL 300
            L L++  L  +    L  L  +  + L  N +  +P    A L  +  L    N L
Sbjct: 445 VLHLAHKDLTVLC--HLEQLLLVTHLDLSHNRLRALPPA-LAALRCLEVLQASDNAL 498

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 41.7 bits (97), Expect = 6e-04
 Identities = 14/63 (22%), Positives = 24/63 (38%), Gaps = 5/63 (7%)

Query: 97  TRVDCSQRGLKEIPKDIPLYT--TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTG 154
           T +D S   L+ +P  +        L  +DN +  +        LP L +L L  N++  
Sbjct: 466 THLDLSHNRLRALPPALAALRCLEVLQASDNALENVDG---VANLPRLQELLLCNNRLQQ 522

Query: 155 IED 157
              
Sbjct: 523 SAA 525

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 56.8 bits (138), Expect = 1e-08
 Identities = 34/227 (14%), Positives = 61/227 (26%), Gaps = 71/227 (31%)

Query: 108 EIPKDIPLYT-----TELILNDNEI-GKIKSDGLFGRLPNLIKLDLRRNQVTG------- 154
                  L         L ++ N+I G +       R  NL  LD+  N  +        
Sbjct: 166 ANVVGWVLSDGCGELKHLAISGNKISGDVD----VSRCVNLEFLDVSSNNFSTGIPFLGD 221

Query: 155 --------IEDNAFEGENDQGCLGDNYCPPKCTCTVRVLFYDGRAGECYIAVELFSSR-- 204
                   I  N   G+                                 +  + +    
Sbjct: 222 CSALQHLDISGNKLSGD--------------------------------FSRAISTCTEL 249

Query: 205 --IRVSY--YVGNYPVSTMYR----DLSNNQI-GFLSNFTFSPLSKLSQLILSYNKLQ-C 254
             + +S   +VG  P   +       L+ N+  G + +F       L+ L LS N     
Sbjct: 250 KLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGA 309

Query: 255 IDRDALAGLKSLRIISLHGNDIS-MIPEGAFADLHAITHLAIGGNPL 300
           +          L  ++L  N+ S  +P      +  +  L +  N  
Sbjct: 310 VPPF-FGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEF 355

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 53.0 bits (128), Expect = 2e-07
 Identities = 40/196 (20%), Positives = 66/196 (33%), Gaps = 51/196 (26%)

Query: 118 TELILNDNEI-GKIKSDGLFGRLPNLIKLDLRRNQVTG-IEDNAFEGENDQGCLGDNYCP 175
             L L+ N   G++       ++  L  LDL  N+ +G +                   P
Sbjct: 321 ESLALSSNNFSGEL-PMDTLLKMRGLKVLDLSFNEFSGEL-------------------P 360

Query: 176 P---KCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYR-DLSNNQI-GF 230
                 + ++  L          ++   FS  I  +  +   P +T+    L NN   G 
Sbjct: 361 ESLTNLSASLLTL---------DLSSNNFSGPILPN--LCQNPKNTLQELYLQNNGFTGK 409

Query: 231 LSNFTFSPLSKLSQLILSYNKL-----QCIDRDALAGLKSLRIISLHGNDIS-MIPEGAF 284
           +     S  S+L  L LS+N L            L  L  LR + L  N +   IP+   
Sbjct: 410 IPPT-LSNCSELVSLHLSFNYLSGTIPSS-----LGSLSKLRDLKLWLNMLEGEIPQE-L 462

Query: 285 ADLHAITHLAIGGNPL 300
             +  +  L +  N L
Sbjct: 463 MYVKTLETLILDFNDL 478

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 52.6 bits (127), Expect = 3e-07
 Identities = 49/202 (24%), Positives = 71/202 (35%), Gaps = 42/202 (20%)

Query: 118 TELILNDNEI-GKIKSDGLFGRLPNLIKLDLRRNQVTG----------------IEDNAF 160
             L L +N+  G+I  D L G    L  LDL  N   G                +  N F
Sbjct: 272 QYLSLAENKFTGEI-PDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNF 330

Query: 161 EGENDQGCLGDNYCPPKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMY 220
            GE     L       K    ++VL          ++   FS  +  S  + N   S + 
Sbjct: 331 SGELPMDTLL------KMR-GLKVL---------DLSFNEFSGELPES--LTNLSASLLT 372

Query: 221 RDLSNNQI-GFL-SNFTFSPLSKLSQLILSYNKLQ-CIDRDALAGLKSLRIISLHGNDIS 277
            DLS+N   G +  N   +P + L +L L  N     I    L+    L  + L  N +S
Sbjct: 373 LDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIP-PTLSNCSELVSLHLSFNYLS 431

Query: 278 -MIPEGAFADLHAITHLAIGGN 298
             IP  +   L  +  L +  N
Sbjct: 432 GTIPS-SLGSLSKLRDLKLWLN 452

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 50.7 bits (122), Expect = 1e-06
 Identities = 19/83 (22%), Positives = 34/83 (40%), Gaps = 6/83 (7%)

Query: 222 DLSNNQI-GFLSNFTFSPLSKLSQLILSYNKLQCI--DRDALAGLKSLRIISLHGNDIS- 277
            LSN+ I G +S F     + L+ L LS N L        +L     L+ +++  N +  
Sbjct: 83  FLSNSHINGSVSGF--KCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDF 140

Query: 278 MIPEGAFADLHAITHLAIGGNPL 300
                    L+++  L +  N +
Sbjct: 141 PGKVSGGLKLNSLEVLDLSANSI 163

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 50.7 bits (122), Expect = 1e-06
 Identities = 34/196 (17%), Positives = 57/196 (29%), Gaps = 52/196 (26%)

Query: 118 TELILNDNEI-GKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGC-------- 168
           T L L+ N + G + +    G    L  L++  N +         G+   G         
Sbjct: 103 TSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDF------PGKVSGGLKLNSLEVL 156

Query: 169 -LGDNYCPPKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQ 227
            L  N                             S    V + + +      +  +S N+
Sbjct: 157 DLSANS---------------------------ISGANVVGWVLSDGCGELKHLAISGNK 189

Query: 228 I-GFLSNFTFSPLSKLSQLILSYNKLQC-IDRDALAGLKSLRIISLHGNDIS-MIPEGAF 284
           I G +     S    L  L +S N     I    L    +L+ + + GN +S      A 
Sbjct: 190 ISGDVD---VSRCVNLEFLDVSSNNFSTGI--PFLGDCSALQHLDISGNKLSGDFSR-AI 243

Query: 285 ADLHAITHLAIGGNPL 300
           +    +  L I  N  
Sbjct: 244 STCTELKLLNISSNQF 259

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 47.2 bits (113), Expect = 1e-05
 Identities = 52/214 (24%), Positives = 79/214 (36%), Gaps = 37/214 (17%)

Query: 108 EIPKDIPLYT--TELILNDNEI-GKIKSDGLFGRLPNLIKLDLRRNQVTG---------- 154
           EIP  +   T    + L++N + G+I      GRL NL  L L  N  +G          
Sbjct: 481 EIPSGLSNCTNLNWISLSNNRLTGEIPKW--IGRLENLAILKLSNNSFSGNIPAELGDCR 538

Query: 155 ------IEDNAFEGE------NDQGCLGDNYCPPKCTCTVRVLFYDGRAGECYIAVELFS 202
                 +  N F G          G +  N+   K       +  DG   EC+ A  L  
Sbjct: 539 SLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGK---RYVYIKNDGMKKECHGAGNLLE 595

Query: 203 SRIRVSYYVGNYPVSTMYRDLSNNQI-GFLSNFTFSPLSKLSQLILSYNKLQ-CIDRDAL 260
            +   S  +     +    ++++    G  S  TF     +  L +SYN L   I    +
Sbjct: 596 FQGIRSEQLNRLS-TRNPCNITSRVYGGHTSP-TFDNNGSMMFLDMSYNMLSGYIP-KEI 652

Query: 261 AGLKSLRIISLHGNDIS-MIPEGAFADLHAITHL 293
             +  L I++L  NDIS  IP+    DL  +  L
Sbjct: 653 GSMPYLFILNLGHNDISGSIPD-EVGDLRGLNIL 685

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 46.8 bits (112), Expect = 2e-05
 Identities = 53/249 (21%), Positives = 76/249 (30%), Gaps = 60/249 (24%)

Query: 108 EIPKDIPLYT--TELILNDNEI-GKIKSDGLFGRLPNLIKLDLRRNQVTG---------- 154
           EIPK I        L L++N   G I ++   G   +LI LDL  N   G          
Sbjct: 505 EIPKWIGRLENLAILKLSNNSFSGNIPAE--LGDCRSLIWLDLNTNLFNGTIPAAMFKQS 562

Query: 155 --IEDNAFEGENDQGCLGDNYCPPKCTCTVRVLFYDGRA----GECYIAVELFSSRIRVS 208
             I  N   G      + ++    +C     +L + G                 +     
Sbjct: 563 GKIAANFIAG-KRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYG 621

Query: 209 ----YYVGNYP-VSTMYRDLSNNQ--------IGFLS----------NFT------FSPL 239
                   N   +  +  D+S N         IG +           + +         L
Sbjct: 622 GHTSPTFDNNGSMMFL--DMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDL 679

Query: 240 SKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDIS-MIPEGAFADLHAITHLAIGGN 298
             L+ L LS NKL      A++ L  L  I L  N++S  IPE                N
Sbjct: 680 RGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQ--FETFPPAKFLNN 737

Query: 299 P-LYCDCGL 306
           P L   CG 
Sbjct: 738 PGL---CGY 743

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 46.1 bits (110), Expect = 3e-05
 Identities = 37/192 (19%), Positives = 61/192 (31%), Gaps = 48/192 (25%)

Query: 118 TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDNYCPPK 177
             L ++ N +          +L +L  LDL  N           G N  G +  + C   
Sbjct: 129 KFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANS--------ISGANVVGWVLSDGCG-- 178

Query: 178 CTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYR----DLSNNQ----IG 229
               ++ L                S  +          VS        D+S+N     I 
Sbjct: 179 ---ELKHL----AISGNK-----ISGDV---------DVSRCVNLEFLDVSSNNFSTGIP 217

Query: 230 FLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDIS-MIPEGAFADLH 288
           FL +      S L  L +S NKL      A++    L+++++  N     IP      L 
Sbjct: 218 FLGD-----CSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSL- 271

Query: 289 AITHLAIGGNPL 300
              +L++  N  
Sbjct: 272 --QYLSLAENKF 281

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 41.4 bits (98), Expect = 9e-04
 Identities = 21/83 (25%), Positives = 32/83 (38%), Gaps = 6/83 (7%)

Query: 222 DLSNNQI-GFLSNFTFSPLSKLSQLILSYNKLQ-CIDRDALAGLKSLRIISLHGNDIS-M 278
            L  N + G +       +  L  LIL +N L   I    L+   +L  ISL  N ++  
Sbjct: 448 KLWLNMLEGEIPQ-ELMYVKTLETLILDFNDLTGEIPSG-LSNCTNLNWISLSNNRLTGE 505

Query: 279 IPEGAFADLHAITHLAIGGNPLY 301
           IP+     L  +  L +  N   
Sbjct: 506 IPKW-IGRLENLAILKLSNNSFS 527

>2bou_A EGF-like module containing mucin-like hormone receptor-like 2 precursor; CD97, CD55, 7TM, calcium-binding, cell adhesion, EGF-LI domain; 1.90A {Homo sapiens} PDB: 2bo2_A 2box_A Length = 143

 Score = 52.9 bits (127), Expect = 2e-08
 Identities = 26/142 (18%), Positives = 46/142 (32%), Gaps = 27/142 (19%)

Query: 397 IDACYGNPCRNSGTCKLLEEGRFNCECAPGYTGDRCEIN--------IDDCLS---HKCE 445
              C    C    +C         C C PG++     I         I++C +     C 
Sbjct: 2   SRGC-ARWCPQDSSCV----NATACRCNPGFSSFSEIITTPMETCDDINECATLSKVSCG 56

Query: 446 NNATCVDLIQAYECRCAPGFQGEFCQTKTPF-----------CAGEYNPCRNGARCLDHF 494
             + C +   +Y+C C+PG++                     C+   + C +   C +  
Sbjct: 57  KFSDCWNTEGSYDCVCSPGYEPVSGAKTFKNESENTCQDVDECSSGQHQCDSSTVCFNTV 116

Query: 495 SHYTCECTPGFSGVNCTVNVDD 516
             Y+C C PG+   +   N   
Sbjct: 117 GSYSCRCRPGWKPRHGIPNNQK 138

>2bou_A EGF-like module containing mucin-like hormone receptor-like 2 precursor; CD97, CD55, 7TM, calcium-binding, cell adhesion, EGF-LI domain; 1.90A {Homo sapiens} PDB: 2bo2_A 2box_A Length = 143

 Score = 50.2 bits (120), Expect = 1e-07
 Identities = 32/133 (24%), Positives = 50/133 (37%), Gaps = 26/133 (19%)

Query: 435 NIDDCLSHKCENNATCVDLIQAYECRCAPGFQGEFCQTKTPF--------CA-GEYNPCR 485
           +   C +  C  +++CV+   A  CRC PGF        TP         CA      C 
Sbjct: 1   DSRGC-ARWCPQDSSCVN---ATACRCNPGFSSFSEIITTPMETCDDINECATLSKVSCG 56

Query: 486 NGARCLDHFSHYTCECTPGFSGVNCTVN-----------VDDCV--NHMCQNGGTCVDGI 532
             + C +    Y C C+PG+  V+               VD+C    H C +   C + +
Sbjct: 57  KFSDCWNTEGSYDCVCSPGYEPVSGAKTFKNESENTCQDVDECSSGQHQCDSSTVCFNTV 116

Query: 533 NDYTCKCEGDFVG 545
             Y+C+C   +  
Sbjct: 117 GSYSCRCRPGWKP 129

>2bou_A EGF-like module containing mucin-like hormone receptor-like 2 precursor; CD97, CD55, 7TM, calcium-binding, cell adhesion, EGF-LI domain; 1.90A {Homo sapiens} PDB: 2bo2_A 2box_A Length = 143

 Score = 46.7 bits (111), Expect = 2e-06
 Identities = 28/112 (25%), Positives = 44/112 (39%), Gaps = 25/112 (22%)

Query: 380 YQCRCTPGYHGQHCEFM--------IDACY---GNPCRNSGTCKLLEEGRFNCECAPGYT 428
             CRC PG+                I+ C       C     C   E G ++C C+PGY 
Sbjct: 19  TACRCNPGFSSFSEIITTPMETCDDINECATLSKVSCGKFSDCWNTE-GSYDCVCSPGYE 77

Query: 429 GDRCEIN-----------IDDCLS--HKCENNATCVDLIQAYECRCAPGFQG 467
                             +D+C S  H+C+++  C + + +Y CRC PG++ 
Sbjct: 78  PVSGAKTFKNESENTCQDVDECSSGQHQCDSSTVCFNTVGSYSCRCRPGWKP 129

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 52.4 bits (126), Expect = 2e-07
 Identities = 27/218 (12%), Positives = 57/218 (26%), Gaps = 59/218 (27%)

Query: 118 TELILNDNEIGKIKSDGLFG---------RLPNLIKLDLRRNQVTGIEDNAFEGENDQGC 168
                +D   G++K +             + P L  + L  N                  
Sbjct: 63  EIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFG-----------PTAQ 111

Query: 169 ------LGDNYCPPKCTCTVRVL-FYD---GRAGECYIAVELFSSRIRVSYYVGNYPVST 218
                 L  +         +  L  ++   G      IA                 P+ +
Sbjct: 112 EPLIDFLSKH-------TPLEHLYLHNNGLGPQAGAKIA-RALQELAVNKKAKNAPPLRS 163

Query: 219 MYRDLSNNQIG-----FLSNFTFSPLSKLSQLILSYNKL-----QCIDRDALAGLKSLRI 268
           +      N++        +  TF     L  + +  N +     + +  + LA  + L++
Sbjct: 164 I--ICGRNRLENGSMKEWAK-TFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKV 220

Query: 269 ISLHGNDISMIPEGAFA------DLHAITHLAIGGNPL 300
           + L  N  +    G+ A          +  L +    L
Sbjct: 221 LDLQDNTFT--HLGSSALAIALKSWPNLRELGLNDCLL 256

>3asi_A Neurexin-1-alpha; beta-sandwich, cell adhesion, synapse maturation, neuroligin glycosylation, membrane; HET: NAG; 2.30A {Bos taurus} Length = 410

 Score = 52.3 bits (125), Expect = 3e-07
 Identities = 39/242 (16%), Positives = 73/242 (30%), Gaps = 45/242 (18%)

Query: 184 VLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLS 243
           ++ Y+   G  +I VEL    +   + +GN                 +   +  PL+   
Sbjct: 42  LILYNSGDGNDFIVVELVKGYLHYVFDLGNGANL-------------IKGSSNKPLNDNQ 88

Query: 244 --QLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIGGNPLY 301
              +++S +              +L  + +     + I  GA  +L   + L IGG    
Sbjct: 89  WHNVMISRDT------------SNLHTVKIDTKITTQITAGAR-NLDLKSDLYIGGVAK- 134

Query: 302 CDCGLAWLSEWVKRDYVEPGIARCTEPASMRD----KLLLTAPASSFQCKEKVSDEILSK 357
                       K  + + G   C     +        L    + +  C  ++       
Sbjct: 135 -----ETYKSLPKLVHAKEGFQGC-----LASVDLNGRLPDLISDALFCNGQIERGCEGP 184

Query: 358 CNACYKSPCTNQGVCEPLPERQYQCRCT-PGYHGQHCEFMIDACYGNPCRNSGTCKLLEE 416
              C +  C+NQGVC    +  + C C+   + G  C         +      T K    
Sbjct: 185 STTCQEDSCSNQGVCLQQWDG-FSCDCSMTSFSGPLCNDPGTTYIFSKGGGQITYKWPPN 243

Query: 417 GR 418
            R
Sbjct: 244 DR 245

>3asi_A Neurexin-1-alpha; beta-sandwich, cell adhesion, synapse maturation, neuroligin glycosylation, membrane; HET: NAG; 2.30A {Bos taurus} Length = 410

 Score = 48.1 bits (114), Expect = 6e-06
 Identities = 13/71 (18%), Positives = 19/71 (26%), Gaps = 1/71 (1%)

Query: 502 TPGFSGVNCTVNVDDCVNHMCQNGGTCVDGINDYTCKCEG-DFVGKFCEIAPFVAMMYPQ 560
             G     C      C    C N G C+   + ++C C    F G  C       +    
Sbjct: 173 CNGQIERGCEGPSTTCQEDSCSNQGVCLQQWDGFSCDCSMTSFSGPLCNDPGTTYIFSKG 232

Query: 561 TSPCQHHDCKN 571
                +    N
Sbjct: 233 GGQITYKWPPN 243

>3asi_A Neurexin-1-alpha; beta-sandwich, cell adhesion, synapse maturation, neuroligin glycosylation, membrane; HET: NAG; 2.30A {Bos taurus} Length = 410

 Score = 45.4 bits (107), Expect = 4e-05
 Identities = 15/66 (22%), Positives = 25/66 (37%), Gaps = 3/66 (4%)

Query: 470 CQTKTPFCAGEYNPCRNGARCLDHFSHYTCECT-PGFSGVNCTVNVDDCVNHMCQNGGTC 528
           C+  +  C  + + C N   CL  +  ++C+C+   FSG  C       +        T 
Sbjct: 181 CEGPSTTC--QEDSCSNQGVCLQQWDGFSCDCSMTSFSGPLCNDPGTTYIFSKGGGQITY 238

Query: 529 VDGIND 534
               ND
Sbjct: 239 KWPPND 244

>3asi_A Neurexin-1-alpha; beta-sandwich, cell adhesion, synapse maturation, neuroligin glycosylation, membrane; HET: NAG; 2.30A {Bos taurus} Length = 410

 Score = 45.0 bits (106), Expect = 5e-05
 Identities = 16/67 (23%), Positives = 25/67 (37%), Gaps = 2/67 (2%)

Query: 385 TPGYHGQHCEFMIDACYGNPCRNSGTCKLLEEGRFNCECA-PGYTGDRCEINIDDCLSHK 443
             G   + CE     C  + C N G C    +G F+C+C+   ++G  C       +  K
Sbjct: 173 CNGQIERGCEGPSTTCQEDSCSNQGVCLQQWDG-FSCDCSMTSFSGPLCNDPGTTYIFSK 231

Query: 444 CENNATC 450
                T 
Sbjct: 232 GGGQITY 238

>3asi_A Neurexin-1-alpha; beta-sandwich, cell adhesion, synapse maturation, neuroligin glycosylation, membrane; HET: NAG; 2.30A {Bos taurus} Length = 410

 Score = 43.8 bits (103), Expect = 1e-04
 Identities = 13/76 (17%), Positives = 19/76 (25%), Gaps = 1/76 (1%)

Query: 424 APGYTGDRCEINIDDCLSHKCENNATCVDLIQAYECRCA-PGFQGEFCQTKTPFCAGEYN 482
             G     CE     C    C N   C+     + C C+   F G  C            
Sbjct: 173 CNGQIERGCEGPSTTCQEDSCSNQGVCLQQWDGFSCDCSMTSFSGPLCNDPGTTYIFSKG 232

Query: 483 PCRNGARCLDHFSHYT 498
             +   +   +    T
Sbjct: 233 GGQITYKWPPNDRPST 248

>4fbr_A Lectin, myxobacterial hemagglutinin; beta-barrel, HIV-inactivating, carbohydrate binding protein; 1.60A {Myxococcus xanthus} PDB: 4fbv_A* Length = 267

 Score = 51.2 bits (122), Expect = 3e-07
 Identities = 26/198 (13%), Positives = 44/198 (22%), Gaps = 42/198 (21%)

Query: 360 ACYKSPCTNQGVCEPLPERQYQCRCTPGYHGQHCEFMIDA------CYGNPCRNSGTCKL 413
                   + G         Y      G+  +  +    +          P  + G   L
Sbjct: 101 VAVSIKSNDGGKTLT-GTTTYNGEGPIGFKSEVTDGDTYSVENQWGGSAAPWHSGGVWVL 159

Query: 414 LEEGRFNCECAPGYTGDRCEINIDDCLSHKCENNATCVDLIQAYECRCAPGFQGEFCQTK 473
                          G R + N+   +  K  +    +     Y      GF+G      
Sbjct: 160 ---------------GTRGKQNVI-NVDAKSNDGGKTLSGTMTYNGEGPIGFRGTLTSPD 203

Query: 474 TPFC----AGEYNPCRNGARCLDHFSHYTCECTPGFSGVNCTVNVDDCVNHMCQNGGTCV 529
           T        G   P   G   +            G       V +    N    +GG  +
Sbjct: 204 TYTVENQWGGSTAPWNPGGFWMI-----------GARNGQNVVAL----NVASSDGGKTL 248

Query: 530 DGINDYTCKCEGDFVGKF 547
            G   Y  +    F  + 
Sbjct: 249 AGTMIYNGEGPIGFRARL 266

>4fbr_A Lectin, myxobacterial hemagglutinin; beta-barrel, HIV-inactivating, carbohydrate binding protein; 1.60A {Myxococcus xanthus} PDB: 4fbv_A* Length = 267

 Score = 50.9 bits (121), Expect = 4e-07
 Identities = 29/180 (16%), Positives = 43/180 (23%), Gaps = 41/180 (22%)

Query: 380 YQCRCTPGYHGQHCEFMIDA------CYGNPCRNSGTCKLLEEGRFNCECAPGYTGDRCE 433
           Y      G+ G                   P +  G   L               G R +
Sbjct: 53  YNGEGPIGFRGTLSSANNYTVENQWGGTSAPWQPGGVWVL---------------GARDK 97

Query: 434 INIDDCLSHKCENNATCVDLIQAYECRCAPGFQGEFCQ----TKTPFCAGEYNPCRNGAR 489
            NI   +S K  +    +     Y      GF+ E       +      G   P  +G  
Sbjct: 98  QNIV-AVSIKSNDGGKTLTGTTTYNGEGPIGFKSEVTDGDTYSVENQWGGSAAPWHSGGV 156

Query: 490 CLDHFSHYTCECTPGFSGVNCTVNVDDCVNHMCQNGGTCVDGINDYTCKCEGDFVGKFCE 549
            +               G     NV   V+    +GG  + G   Y  +    F G    
Sbjct: 157 WV--------------LGTRGKQNVI-NVDAKSNDGGKTLSGTMTYNGEGPIGFRGTLTS 201

>4fbr_A Lectin, myxobacterial hemagglutinin; beta-barrel, HIV-inactivating, carbohydrate binding protein; 1.60A {Myxococcus xanthus} PDB: 4fbv_A* Length = 267

 Score = 40.5 bits (94), Expect = 8e-04
 Identities = 16/111 (14%), Positives = 29/111 (26%), Gaps = 19/111 (17%)

Query: 443 KCENNATCVDLIQAYECRCAPGFQGEFCQTKTPFC----AGEYNPCRNGARCLDHFSHYT 498
           K ++    +     Y      GF+G               G   P + G   +       
Sbjct: 39  KSDDGGKTLKGTMTYNGEGPIGFRGTLSSANNYTVENQWGGTSAPWQPGGVWVL------ 92

Query: 499 CECTPGFSGVNCTVNVDDCVNHMCQNGGTCVDGINDYTCKCEGDFVGKFCE 549
                   G     N+   V+    +GG  + G   Y  +    F  +  +
Sbjct: 93  --------GARDKQNIV-AVSIKSNDGGKTLTGTTTYNGEGPIGFKSEVTD 134

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 51.8 bits (123), Expect = 6e-07
 Identities = 44/290 (15%), Positives = 81/290 (27%), Gaps = 80/290 (27%)

Query: 124 DNEIGKIK---SDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDNYCPPKCTC 180
           D E G+ +    D L       +  +     V  +  +    E     +           
Sbjct: 8   DFETGEHQYQYKDILSVFEDAFVD-NFDCKDVQDMPKSILSKEE----IDHIIMSKDAVS 62

Query: 181 TVRVLFYDGRAGECYIAVELFSSRIRVSYYVG-----NY-----PVSTMYRDLSNNQIGF 230
               LF           +      + V  +V      NY     P+ T  R  S     +
Sbjct: 63  GTLRLF---------WTLLSKQEEM-VQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMY 112

Query: 231 LSNFTFSPLSKLSQLILSYN--KLQCID--RDALAGLKSLRIISLHGNDISMIPEGAFAD 286
           +       L   +Q+   YN  +LQ     R AL  L+  + + + G    +        
Sbjct: 113 IE--QRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDG----V-------- 158

Query: 287 LHAITHLAIGGNPLYCDCGLAWLSEWVKRDY-VE---PG------IARCTEPASMRDKL- 335
                     G       G  W++  V   Y V+           +  C  P ++ + L 
Sbjct: 159 ---------LG------SGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQ 203

Query: 336 -LLTAPASSFQCKEKVSDEILSKCNACYKSPCTNQGVCEPLPERQYQCRC 384
            LL     ++  +   S  I  + ++          +   L  + Y+  C
Sbjct: 204 KLLYQIDPNWTSRSDHSSNIKLRIHS------IQAELRRLLKSKPYE-NC 246

>1dx5_I Thrombomodulin; serine proteinase, EGF-like domains, anticoagulant complex, antifibrinolytic complex, hydrolase-hydrolase inhibitor COM; HET: AR7 NDG; 2.30A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 3gis_X 1dqb_A* 1zaq_A 1adx_A 2adx_A Length = 118

 Score = 47.4 bits (113), Expect = 6e-07
 Identities = 29/113 (25%), Positives = 45/113 (39%), Gaps = 11/113 (9%)

Query: 359 NACYKSPCTNQGVCEPLPERQYQCRCTPGYHGQHCEFMIDACYGNPCRNSGTCKLLEEGR 418
           + C+++ C  +  C+PL +  Y C C  G+     E      + N       C      +
Sbjct: 5   DPCFRANC--EYQCQPLDQTSYLCVCAEGFAPIPHEPHRCQMFCNQTACPADCDP--NTQ 60

Query: 419 FNCECAPGYT---GDRCEINIDDCLS-HKCENNATCVDLIQAYECRCAPGFQG 467
            +CEC  GY    G  C  +ID+C +   C     C +L   +EC C P    
Sbjct: 61  ASCECPEGYILDDGFICT-DIDECENGGFCS--GVCHNLPGTFECICGPDSAL 110

>1dx5_I Thrombomodulin; serine proteinase, EGF-like domains, anticoagulant complex, antifibrinolytic complex, hydrolase-hydrolase inhibitor COM; HET: AR7 NDG; 2.30A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 3gis_X 1dqb_A* 1zaq_A 1adx_A 2adx_A Length = 118

 Score = 43.1 bits (102), Expect = 2e-05
 Identities = 24/113 (21%), Positives = 39/113 (34%), Gaps = 12/113 (10%)

Query: 397 IDACYGNPCRNSGTCKLLEEGRFNCECAPGYTGDRCEINIDDCLSHKCENNATCVDLIQA 456
           +D C+   C     C+ L++  + C CA G+     E +      ++    A C    Q 
Sbjct: 4   VDPCFRANC--EYQCQPLDQTSYLCVCAEGFAPIPHEPHRCQMFCNQTACPADCDPNTQ- 60

Query: 457 YECRCAPGFQGEFCQTKTPFCAGEYNPCRNG----ARCLDHFSHYTCECTPGF 505
             C C  G+  +        C    + C NG      C +    + C C P  
Sbjct: 61  ASCECPEGYILDDGFI----CTD-IDECENGGFCSGVCHNLPGTFECICGPDS 108

>1q4g_A Prostaglandin G/H synthase 1; cyclooxygenase, non-steroidal anti-inflammatory drug, peroxi prostaglandin synthase, EGF-like domain; HET: BOG NAG NDG BMA MAN BFL HEM; 2.00A {Ovis aries} SCOP: a.93.1.2 g.3.11.1 PDB: 1diy_A* 2ayl_A* 3kk6_A* 3n8v_A* 3n8w_A* 3n8x_A* 3n8y_A* 3n8z_A* 2oyu_P* 2oye_P* 1eqg_A* 1cqe_A* 1eqh_A* 1igz_A* 1igx_A* 1fe2_A* 1pge_A* 1pgf_A* 1pgg_A* 3n8w_B* ... Length = 553

 Score = 50.4 bits (120), Expect = 1e-06
 Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 1/38 (2%)

Query: 359 NACYKSPCTNQGVCEPLPERQYQCRCTP-GYHGQHCEF 395
           N C   PC +QG+C      +YQC CT  GY G +C  
Sbjct: 3   NPCCYYPCQHQGICVRFGLDRYQCDCTRTGYSGPNCTI 40

>3nt1_A Prostaglandin-endoperoxide synthase 2; prostaglandin H2 synthase, cyclooxygenase-2, naproxen, oxido; HET: NAG BOG NPS HEM; 1.73A {Mus musculus} PDB: 3ln1_A* 3mqe_A* 3ln0_A* 3ntb_A* 3q7d_A* 1pxx_A* 3pgh_A* 1cx2_A* 4cox_A* 5cox_A* 6cox_A* 3qh0_A* 3qmo_A* 4e1g_A* 3olu_A* 3olt_A* 3hs5_A* 3hs6_A* 3hs7_A* 3krk_A* ... Length = 587

 Score = 50.1 bits (119), Expect = 2e-06
 Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 1/38 (2%)

Query: 359 NACYKSPCTNQGVCEPLPERQYQCRCTP-GYHGQHCEF 395
           N C  +PC N+G C      QY+C CT  G++G++C  
Sbjct: 2   NPCCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENCTT 39

>1egf_A Epidermal growth factor; NMR {Mus musculus} SCOP: g.3.11.1 PDB: 1epg_A 1eph_A 1epi_A 1epj_A 3egf_A 1gk5_A Length = 53

 Score = 44.0 bits (104), Expect = 2e-06
 Identities = 14/41 (34%), Positives = 17/41 (41%), Gaps = 1/41 (2%)

Query: 356 SKCNACYKSPCTNQGVCEPLPE-RQYQCRCTPGYHGQHCEF 395
             C + Y   C N GVC  +     Y C C  GY G  C+ 
Sbjct: 4   PGCPSSYDGYCLNGGVCMHIESLDSYTCNCVIGYSGDRCQT 44

>1egf_A Epidermal growth factor; NMR {Mus musculus} SCOP: g.3.11.1 PDB: 1epg_A 1eph_A 1epi_A 1epj_A 3egf_A 1gk5_A Length = 53

 Score = 41.3 bits (97), Expect = 2e-05
 Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 1/36 (2%)

Query: 399 ACYGNPCRNSGTCKLLEE-GRFNCECAPGYTGDRCE 433
           + Y   C N G C  +E    + C C  GY+GDRC+
Sbjct: 8   SSYDGYCLNGGVCMHIESLDSYTCNCVIGYSGDRCQ 43

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 46.9 bits (112), Expect = 9e-06
 Identities = 15/78 (19%), Positives = 31/78 (39%), Gaps = 3/78 (3%)

Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPE 281
           +L +  +    +     LS L  + +    L  +  D +     L  ++L  N +  +P 
Sbjct: 87  ELRSVPLPQFPD-QAFRLSHLQHMTIDAAGLMELP-DTMQQFAGLETLTLARNPLRALPA 144

Query: 282 GAFADLHAITHLAIGGNP 299
            + A L+ +  L+I   P
Sbjct: 145 -SIASLNRLRELSIRACP 161

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 44.9 bits (107), Expect = 4e-05
 Identities = 11/80 (13%), Positives = 23/80 (28%), Gaps = 3/80 (3%)

Query: 222 DLSNNQIGFL-SNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIP 280
             +   +         +       L L    L     D    L  L+ +++    +  +P
Sbjct: 62  TRTGRALKATADLLEDATQPGRVALELRSVPLPQFP-DQAFRLSHLQHMTIDAAGLMELP 120

Query: 281 EGAFADLHAITHLAIGGNPL 300
           +        +  L +  NPL
Sbjct: 121 D-TMQQFAGLETLTLARNPL 139

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 42.2 bits (100), Expect = 3e-04
 Identities = 13/86 (15%), Positives = 34/86 (39%), Gaps = 11/86 (12%)

Query: 222 DLS-NNQIGFL--------SNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLH 272
            +    ++  L        ++     L  L  L L +  ++ +   ++A L++L+ + + 
Sbjct: 156 SIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLP-ASIANLQNLKSLKIR 214

Query: 273 GNDISMIPEGAFADLHAITHLAIGGN 298
            + +S +   A   L  +  L + G 
Sbjct: 215 NSPLSALGP-AIHHLPKLEELDLRGC 239

>1nql_B Epidermal growth factor; cell surface receptor, tyrosine kinase, glycoprotein, endoso growth factor, auto-inhibition; HET: NAG BMA; 2.80A {Homo sapiens} SCOP: g.3.11.1 PDB: 1ivo_C* 2kv4_A 1jl9_A 1p9j_A 3njp_C* Length = 53

 Score = 41.7 bits (98), Expect = 1e-05
 Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 1/41 (2%)

Query: 356 SKCNACYKSPCTNQGVCEPLPE-RQYQCRCTPGYHGQHCEF 395
           S+C   +   C + GVC  +    +Y C C  GY G+ C++
Sbjct: 4   SECPLSHDGYCLHDGVCMYIEALDKYACNCVVGYIGERCQY 44

>1nql_B Epidermal growth factor; cell surface receptor, tyrosine kinase, glycoprotein, endoso growth factor, auto-inhibition; HET: NAG BMA; 2.80A {Homo sapiens} SCOP: g.3.11.1 PDB: 1ivo_C* 2kv4_A 1jl9_A 1p9j_A 3njp_C* Length = 53

 Score = 39.4 bits (92), Expect = 9e-05
 Identities = 11/37 (29%), Positives = 18/37 (48%), Gaps = 1/37 (2%)

Query: 398 DACYGNPCRNSGTCKLLEE-GRFNCECAPGYTGDRCE 433
              +   C + G C  +E   ++ C C  GY G+RC+
Sbjct: 7   PLSHDGYCLHDGVCMYIEALDKYACNCVVGYIGERCQ 43

>2w2n_E LDL receptor, low-density lipoprotein receptor; hydrolase-receptor complex, PCSK9, proprotein converta low-density lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB: 2w2q_E 2w2o_E 2w2p_E 2w2m_E 3gcw_E 3bps_E 3gcx_E 1hz8_A 1i0u_A 1hj7_A Length = 107

 Score = 42.3 bits (100), Expect = 3e-05
 Identities = 25/90 (27%), Positives = 35/90 (38%), Gaps = 7/90 (7%)

Query: 380 YQCRCTPGYHGQHCEFMIDACYGNPCRNSGTCKLLEEGRFNCECAPGYT--GDRCEINID 437
           Y    T   + Q      + C  N    S  C  L +  + C C  G+     R   +ID
Sbjct: 13  YDIPTTENLYFQGAMG-TNECLDNNGGCSYVCNDL-KIGYECLCPDGFQLVAQRRCEDID 70

Query: 438 DCLS-HKCENNATCVDLIQAYECRCAPGFQ 466
           +C     C     CV+L   Y+C+C  GFQ
Sbjct: 71  ECQDPDTCS--QLCVNLEGGYKCQCEEGFQ 98

>4aqs_A Laminin subunit beta-1; cell adhesion; HET: NAG BMA MAN FUL; 3.11A {Mus musculus} Length = 525

 Score = 43.1 bits (101), Expect = 2e-04
 Identities = 49/268 (18%), Positives = 71/268 (26%), Gaps = 39/268 (14%)

Query: 358 CNACYKSPCTNQGVCEPLPERQYQCRCTPGYHGQHCEFMIDACYGNPCR-----NSGTCK 412
            + C      N+ V          C C     G +CE  +D  +  P R     NS  CK
Sbjct: 260 ASECAPVDGVNEEVEGM---VHGHCMCRHNTKGLNCELCMDFYHDLPWRPAEGRNSNACK 316

Query: 413 LLEEGRFNCECAPGYTGDRCEINIDDCLSHKCENNATCVDLIQA----YECRCAPGFQGE 468
                  +  C           N+   +   C++N    +  Q     ++          
Sbjct: 317 KCNCNEHSSSCHFDMAVFLATGNVSGGVCDNCQHNTMGRNCEQCKPFYFQHPERDIRDPN 376

Query: 469 FCQTKTPFCAGEYNPCRNGARCLDHFSHYT--CECTPGFSGVNCT-----------VNVD 515
            C+  T   AG  N                  C C     G  C             +  
Sbjct: 377 LCEPCTCDPAGSENGGICDGYTDFSVGLIAGQCRCKLHVEGERCDVCKEGFYDLSAEDPY 436

Query: 516 DCVNHMCQNGGTCVDGI----NDYTCKCEGDFVGKFCEI-APFVAMMYPQTSPCQHHDC- 569
            C +  C   GT   G         C C+    G+ C+   P    +      C+  DC 
Sbjct: 437 GCKSCACNPLGTIPGGNPCDSETGYCYCKRLVTGQRCDQCLPQHWGLSNDLDGCRPCDCD 496

Query: 570 ----KNGICFQPQGSNDYLCKCAPGYSG 593
                N  C +  G     C C P   G
Sbjct: 497 LGGALNNSCSEDSGQ----CSCLPHMIG 520

>4aqs_A Laminin subunit beta-1; cell adhesion; HET: NAG BMA MAN FUL; 3.11A {Mus musculus} Length = 525

 Score = 41.6 bits (97), Expect = 6e-04
 Identities = 33/170 (19%), Positives = 39/170 (22%), Gaps = 20/170 (11%)

Query: 358 CNACYKSPCTNQGVCEPLPERQYQCRCTPGYHGQHCEFMIDACYGNPCRNSG---TCKLL 414
           C  C   P   Q     + +      CT    G     + D               CKL 
Sbjct: 357 CEQCK--PFYFQHPERDIRDPNLCEPCTCDPAGSENGGICDGYTDFSVGLIAGQCRCKLH 414

Query: 415 EEGRFNCECAPGYTGDRCEINIDDCLSHKCENNATCVDLIQAY----ECRCAPGFQGEFC 470
            EG     C  G+     E +   C S  C    T             C C     G+ C
Sbjct: 415 VEGERCDVCKEGFYDLSAE-DPYGCKSCACNPLGTIPGGNPCDSETGYCYCKRLVTGQRC 473

Query: 471 QTKTPFCAGEYNPCRNGARCLDHFSHYT----------CECTPGFSGVNC 510
               P   G  N       C                  C C P   G  C
Sbjct: 474 DQCLPQHWGLSNDLDGCRPCDCDLGGALNNSCSEDSGQCSCLPHMIGRQC 523

>3ltf_D Protein spitz; receptor-ligand complex ectodomain cysteine rich domain EGF ATP-binding, kinase, nucleotide-binding, receptor; HET: NAG MAN; 3.20A {Drosophila melanogaster} Length = 58

 Score = 38.0 bits (88), Expect = 3e-04
 Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 3/39 (7%)

Query: 398 DACYGNPCRNSGTC---KLLEEGRFNCECAPGYTGDRCE 433
           +      C N   C   K+ +   ++CECA G+ G RCE
Sbjct: 9   ETFDAWYCLNDAHCFAVKIADLPVYSCECAIGFMGQRCE 47

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 42.1 bits (100), Expect = 4e-04
 Identities = 21/82 (25%), Positives = 34/82 (41%), Gaps = 7/82 (8%)

Query: 222 DLSNNQI-GFLSNFTFSPLSKLSQLILSYNKLQC-IDRDALAGLKSLRIISLHGNDIS-M 278
           DLS N + G  S   F       ++ L+ N L   + +  +   K+L  + L  N I   
Sbjct: 203 DLSRNMLEGDAS-VLFGSDKNTQKIHLAKNSLAFDLGK--VGLSKNLNGLDLRNNRIYGT 259

Query: 279 IPEGAFADLHAITHLAIGGNPL 300
           +P+G    L  +  L +  N L
Sbjct: 260 LPQG-LTQLKFLHSLNVSFNNL 280

>1lmj_A Fibrillin 1; EGF, calcium, microfibril, neonatal, marfan syndrome, connective tissue, extracellular matrix, structural protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 Length = 86

 Score = 38.4 bits (90), Expect = 5e-04
 Identities = 21/79 (26%), Positives = 28/79 (35%), Gaps = 12/79 (15%)

Query: 393 CEFMIDACYGNPCRNSGTCKLLEEGRFNCECAPGYTGDRCE----INIDDCLSHKCE-NN 447
           C    D C    C N+        G F C+C  GY          ++ID+C         
Sbjct: 6   CRISPDLCGRGQCVNT-------PGDFECKCDEGYESGFMMMKNCMDIDECQRDPLLCRG 58

Query: 448 ATCVDLIQAYECRCAPGFQ 466
             C +   +Y C C PG Q
Sbjct: 59  GVCHNTEGSYRCECPPGHQ 77

>4dur_A Plasminogen, serine protease; fibrinolysis, hydrolase; HET: NAG GAL SIA; 2.45A {Homo sapiens} PDB: 4a5t_S* 4duu_A 2feb_A Length = 791

 Score = 41.6 bits (97), Expect = 7e-04
 Identities = 24/167 (14%), Positives = 41/167 (24%), Gaps = 18/167 (10%)

Query: 384 CTPGYHGQHCEFMIDACYGNPCRNSGTCKLLEEGRFNCECAPGYTGDRCEINIDDCLSHK 443
             P    + C+             +  C       +    A   +G  C+          
Sbjct: 229 TDPNKRWELCDIPRCTTPPPSSGPTYQCLKGTGENYRGNVAVTVSGHTCQHWSAQTPHTH 288

Query: 444 CEN--NATCVDLIQAYECRCAPGFQGEFCQTKTPFCAGEYNPCRNGARCLDHFSHYTCEC 501
                N  C +L + Y CR   G +  +C T       EY  C+  +          C+ 
Sbjct: 289 NRTPENFPCKNLDENY-CRNPDGKRAPWCHTTNSQVRWEY--CKIPS----------CDS 335

Query: 502 TPGFSGVNCTVNVDDCVNHMCQNGGTCVDGINDYTCKCEGDFVGKFC 548
           +P  +         +    +             Y         GK C
Sbjct: 336 SPVSTEQLAPTAPPELTPVVQD---CYHGDGQSYRGTSSTTTTGKKC 379

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 41.5 bits (98), Expect = 7e-04
 Identities = 31/178 (17%), Positives = 56/178 (31%), Gaps = 43/178 (24%)

Query: 118 TELILNDNEIGKIKSDG------LFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGD 171
             + L+D  +                  P L +L+LR N+   + D          C+  
Sbjct: 31  QVVRLDDCGLT---EARCKDISSALRVNPALAELNLRSNE---LGDVGVH------CVLQ 78

Query: 172 NYCPPKCTCTVRVLFYDGRAGECYI---AVELFSSRIRVSYYVGNYPVSTMYRDLSNNQI 228
                  +C ++ L        C +      + SS +R         +  +   LS+N +
Sbjct: 79  --GLQTPSCKIQKL----SLQNCCLTGAGCGVLSSTLRT-----LPTLQEL--HLSDNLL 125

Query: 229 G-----FLSNFTFSPLSKLSQLILSYNKLQCIDR----DALAGLKSLRIISLHGNDIS 277
           G      L      P  +L +L L Y  L           L      + +++  NDI+
Sbjct: 126 GDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDIN 183

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	604
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	100.0
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	100.0
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	100.0
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	100.0
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	100.0
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.97
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.97
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.97
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.97
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.97
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.96
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.96
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.96
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.95
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.95
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.94
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.92
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.92
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.92
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.92
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.92
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.91
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.91
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.91
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.91
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.91
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.91
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.89
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.88
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.88
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.88
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.88
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.87
4fbr_A	267	Lectin, myxobacterial hemagglutinin; beta-barrel,	99.87
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.86
2vj3_A	135	Neurogenic locus notch homolog protein 1; transcri	99.86
1z1y_A	186	Ookinete surface protein PVS25; four EGF-like doma	99.86
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.85
2vj3_A	135	Neurogenic locus notch homolog protein 1; transcri	99.85
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.84
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.84
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.84
1z1y_A	186	Ookinete surface protein PVS25; four EGF-like doma	99.84
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.83
2ygq_A	324	WIF-1, WNT inhibitory factor 1; signaling protein,	99.83
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.83
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.82
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.82
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.82
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.81
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.81
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.81
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.81
2ygq_A	324	WIF-1, WNT inhibitory factor 1; signaling protein,	99.81
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.81
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.81
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.81
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.8
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.8
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.79
4d90_A	143	EGF-like repeat and discoidin I-like domain-conta	99.79
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.79
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.79
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.78
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.78
3fcs_B	690	Integrin beta-3; beta propeller, rossmann fold, EG	99.78
4d90_A	143	EGF-like repeat and discoidin I-like domain-conta	99.78
3fcs_B	690	Integrin beta-3; beta propeller, rossmann fold, EG	99.77
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.77
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.77
2vj2_A	169	Jagged-1; signalling, polymorphism, glycoprotein,	99.77
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.77
2vj2_A	169	Jagged-1; signalling, polymorphism, glycoprotein,	99.77
4fbr_A	267	Lectin, myxobacterial hemagglutinin; beta-barrel,	99.77
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.76
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.76
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.76
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.75
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.75
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.74
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.74
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.74
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.74
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.74
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.74
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.74
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.73
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.73
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.73
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.73
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.73
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.72
1yo8_A	634	Thrombospondin-2; EGF, Ca(2+)-binding domains, lec	99.72
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.72
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.71
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.71
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.7
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.7
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.7
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.7
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.7
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.69
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.69
1yo8_A	634	Thrombospondin-2; EGF, Ca(2+)-binding domains, lec	99.69
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.69
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.69
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.69
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.69
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.68
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.68
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.67
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.67
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.66
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.65
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.64
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.64
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.64
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.63
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.62
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.62
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.61
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.61
3k6s_B	687	Integrin beta-2; cell receptor, adhesion molecule,	99.61
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.61
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	99.6
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.6
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.6
1uzk_A	162	Fibrillin-1; glycoprotein, extra-cellular matrix,	99.6
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.6
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.58
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.58
2bou_A	143	EGF-like module containing mucin-like hormone rece	99.58
1uzk_A	162	Fibrillin-1; glycoprotein, extra-cellular matrix,	99.57
2bou_A	143	EGF-like module containing mucin-like hormone rece	99.57
2gy5_A	423	Angiopoietin-1 receptor; ligand-binding domain, tr	99.57
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.57
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.57
2gy5_A	423	Angiopoietin-1 receptor; ligand-binding domain, tr	99.56
3k6s_B	687	Integrin beta-2; cell receptor, adhesion molecule,	99.56
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.56
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.55
1dx5_I	118	Thrombomodulin; serine proteinase, EGF-like domain	99.55
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.54
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.51
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.51
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.51
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.5
1tpg_A	91	T-plasminogen activator F1-G; plasminogen activati	99.49
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.49
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.48
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.48
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.47
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.47
4aqs_A	525	Laminin subunit beta-1; cell adhesion; HET: NAG BM	99.47
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.46
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.44
1tpg_A	91	T-plasminogen activator F1-G; plasminogen activati	99.43
2w86_A	147	Fibrillin-1, fibrillin1; phosphoprotein, EGF-like	99.43
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.43
1dx5_I	118	Thrombomodulin; serine proteinase, EGF-like domain	99.42
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.41
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.39
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.36
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.35
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.32
2w86_A	147	Fibrillin-1, fibrillin1; phosphoprotein, EGF-like	99.29
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.28
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.28
1aut_L	114	Activated protein C; serine proteinase, plasma cal	99.25
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.25
1emn_A	82	Fibrillin; extracellular matrix, calcium-binding,	99.23
1emn_A	82	Fibrillin; extracellular matrix, calcium-binding,	99.19
1lmj_A	86	Fibrillin 1; EGF, calcium, microfibril, neonatal,	99.18
1x7a_L	146	Coagulation factor IX, light chain; inhibition, bl	99.16
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.16
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	99.15
1x7a_L	146	Coagulation factor IX, light chain; inhibition, bl	99.14
1nfu_B	195	Coagulation factor XA, light chain; hydrolase; HET	99.13
1z6c_A	87	Vitamin K-dependent protein S; EGF module, blood c	99.13
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.12
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.1
1lmj_A	86	Fibrillin 1; EGF, calcium, microfibril, neonatal,	99.09
2c4f_L	142	Coagulation factor VII precursor; blood coagulatio	99.08
2vh0_B	134	Activated factor XA light chain; serine protease,	99.06
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.06
2c4f_L	142	Coagulation factor VII precursor; blood coagulatio	99.05
2w2n_E	107	LDL receptor, low-density lipoprotein receptor; hy	99.05
1z6c_A	87	Vitamin K-dependent protein S; EGF module, blood c	99.04
1nfu_B	195	Coagulation factor XA, light chain; hydrolase; HET	99.04
1aut_L	114	Activated protein C; serine proteinase, plasma cal	99.02
1klo_A	162	Laminin; glycoprotein; 2.10A {Mus musculus} SCOP:	99.01
2vh0_B	134	Activated factor XA light chain; serine protease,	99.0
2p28_B	217	Integrin beta-2; hybrid domain, PSI domain, I-EGF	98.97
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	98.94
1klo_A	162	Laminin; glycoprotein; 2.10A {Mus musculus} SCOP:	98.93
2w2n_E	107	LDL receptor, low-density lipoprotein receptor; hy	98.9
2p28_B	217	Integrin beta-2; hybrid domain, PSI domain, I-EGF	98.89
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	98.87
3u7u_G	55	Neuregulin 1; signaling protein, transferase-trans	98.85
4aqs_A	525	Laminin subunit beta-1; cell adhesion; HET: NAG BM	98.85
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.8
3h5c_B	317	Vitamin K-dependent protein Z; protein Z-protein Z	98.77
3u7u_G	55	Neuregulin 1; signaling protein, transferase-trans	98.74
3h5c_B	317	Vitamin K-dependent protein Z; protein Z-protein Z	98.74
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	98.63
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	98.62
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	98.62
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	98.61
1edm_B	39	Factor IX; epidermal growth factor, EGF, calcium-	98.6
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	98.45
1edm_B	39	Factor IX; epidermal growth factor, EGF, calcium-	98.43
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.39
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	98.38
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.35
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.35
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	98.33
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.33
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	98.32
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.31
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	98.31
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.3
1hae_A	63	Heregulin-alpha; growth factor; NMR {Homo sapiens}	98.3
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.27
1egf_A	53	Epidermal growth factor; NMR {Mus musculus} SCOP:	98.26
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	98.25
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	98.23
1k36_A	46	Epiregulin; EGF-like fold, hormone/growth factor c	98.19
1egf_A	53	Epidermal growth factor; NMR {Mus musculus} SCOP:	98.16
2k2s_B	61	Micronemal protein 6; microneme protein complex, c	98.16
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.16
3ca7_A	52	Protein spitz; argos, EGF, developmental protein,	98.16
3zyj_B	426	Netrin-G1; cell adhesion, synapse; HET: NAG BMA MA	98.15
3zyj_B	426	Netrin-G1; cell adhesion, synapse; HET: NAG BMA MA	98.13
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.11
1a3p_A	45	Epidermal growth factor; disulfide connectivities,	98.11
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	98.1
1a3p_A	45	Epidermal growth factor; disulfide connectivities,	98.09
1k36_A	46	Epiregulin; EGF-like fold, hormone/growth factor c	98.07
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	97.98
1hae_A	63	Heregulin-alpha; growth factor; NMR {Homo sapiens}	97.93
2k2s_B	61	Micronemal protein 6; microneme protein complex, c	97.89
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	97.87
3ca7_A	52	Protein spitz; argos, EGF, developmental protein,	97.83
2fd6_A	122	Urokinase-type plasminogen activator; UPAR, ATF, A	97.68
1nql_B	53	Epidermal growth factor; cell surface receptor, ty	97.65
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	97.62
1nql_B	53	Epidermal growth factor; cell surface receptor, ty	97.55
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.4
2fd6_A	122	Urokinase-type plasminogen activator; UPAR, ATF, A	97.27
3ltf_D	58	Protein spitz; receptor-ligand complex ectodomain	97.27
3e50_C	50	Protransforming growth factor alpha; IDE, TGF-alph	97.08
1xdt_R	79	Hbegf, heparin-binding epidermal growth factor; co	97.03
3ltf_D	58	Protein spitz; receptor-ligand complex ectodomain	97.01
1g1s_A	162	P-selectin; selectin, lectin, EGF, sulphated, SLEX	96.99
2rnl_A	50	Amphiregulin; AR, colorectum cell-derived growth f	96.95
1apq_A	53	Complement protease C1R; EGF, calcium binding, ser	96.89
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	96.81
1iox_A	50	Betacellulin; EGF-like fold, hormone/growth factor	96.81
2i9a_A	145	Urokinase-type plasminogen activator; growth facto	96.77
1ob1_C	99	Major merozoite surface protein; immune system, im	96.71
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	96.62
1q4g_A	553	Prostaglandin G/H synthase 1; cyclooxygenase, non-	96.62
1g1s_A	162	P-selectin; selectin, lectin, EGF, sulphated, SLEX	96.57
2jkh_L	55	Factor X light chain; plasma, calcium, zymogen, se	96.56
2kl7_A	71	Fibulin-4; secreted, calcium, disease mutation, di	96.52
1apq_A	53	Complement protease C1R; EGF, calcium binding, ser	96.38
3nt1_A	587	Prostaglandin-endoperoxide synthase 2; prostagland	96.37
1ob1_C	99	Major merozoite surface protein; immune system, im	96.3
1n1i_A	105	Merozoite surface protein-1; MSP1, malaria, surfac	96.24
2kl7_A	71	Fibulin-4; secreted, calcium, disease mutation, di	96.19
4aqt_A	375	Laminin subunit gamma-1; cell adhesion; HET: NAG B	96.15
1gl4_A	285	Nidogen-1, entactin; immunoglobulin-like domain, e	96.14
1q4g_A	553	Prostaglandin G/H synthase 1; cyclooxygenase, non-	96.08
3nt1_A	587	Prostaglandin-endoperoxide synthase 2; prostagland	95.93
1kli_L	69	Factor VIIA; extrinsic coagulation pathway, serine	95.65
2i9a_A	145	Urokinase-type plasminogen activator; growth facto	95.65
1gl4_A	285	Nidogen-1, entactin; immunoglobulin-like domain, e	95.6
1xdt_R	79	Hbegf, heparin-binding epidermal growth factor; co	95.47
1kig_L	51	Factor XA; glycoprotein, serine protease, plasma,	95.45
2jkh_L	55	Factor X light chain; plasma, calcium, zymogen, se	95.45
4aqt_A	375	Laminin subunit gamma-1; cell adhesion; HET: NAG B	95.44
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	95.39
3cfw_A	164	L-selectin; EGF, cell adhesion, EGF-like domain, g	95.38
1n1i_A	105	Merozoite surface protein-1; MSP1, malaria, surfac	95.36
2y38_A	403	Laminin subunit alpha-5; structural protein, cell	95.21
3e50_C	50	Protransforming growth factor alpha; IDE, TGF-alph	95.17
1iox_A	50	Betacellulin; EGF-like fold, hormone/growth factor	95.07
2p26_A	280	Integrin beta-2; hybrid domain, PSI domain, I-EGF	95.05
2rnl_A	50	Amphiregulin; AR, colorectum cell-derived growth f	95.01
3cfw_A	164	L-selectin; EGF, cell adhesion, EGF-like domain, g	94.96
1szb_A	170	Mannose binding lectin-associated serine protease-	94.73
2y38_A	403	Laminin subunit alpha-5; structural protein, cell	94.7
1g1t_A	157	E-selectin; EGF, adhesion molecule, SLEX, immune s	94.69
1g1t_A	157	E-selectin; EGF, adhesion molecule, SLEX, immune s	94.69
2ygo_A	188	WIF-1, WNT inhibitory factor 1; signaling protein,	94.61
1kli_L	69	Factor VIIA; extrinsic coagulation pathway, serine	94.44
3asi_A	410	Neurexin-1-alpha; beta-sandwich, cell adhesion, sy	94.24
2bz6_L	53	Blood coagulation factor VIIA; serine protease, en	94.03
2ygo_A	188	WIF-1, WNT inhibitory factor 1; signaling protein,	93.41
2p26_A	280	Integrin beta-2; hybrid domain, PSI domain, I-EGF	93.15
1szb_A	170	Mannose binding lectin-associated serine protease-	92.68
3asi_A	410	Neurexin-1-alpha; beta-sandwich, cell adhesion, sy	92.53
1kig_L	51	Factor XA; glycoprotein, serine protease, plasma,	91.34
2bz6_L	53	Blood coagulation factor VIIA; serine protease, en	91.17
2lz0_A	100	Uncharacterized protein; hypothetical leucine rich	90.47
3qcw_A	1245	Neurexin-1-alpha; synaptic adhesion molecule, cell	90.0
1nzi_A	159	Complement C1S component; calcium, innate immunity	89.54
2e26_A	725	Reelin, reeler protein; signaling protein; HET: NA	88.89
3qcw_A	1245	Neurexin-1-alpha; synaptic adhesion molecule, cell	88.89
2wph_E	59	Coagulation factor IXA light chain; serine proteas	88.68
2e26_A	725	Reelin, reeler protein; signaling protein; HET: NA	88.62
1b9w_A	95	Protein (merozoite surface protein 1); MSP-1, cand	86.34
2wph_E	59	Coagulation factor IXA light chain; serine proteas	81.97
1nzi_A	159	Complement C1S component; calcium, innate immunity	81.39
1b9w_A	95	Protein (merozoite surface protein 1); MSP-1, cand	80.24

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=100.00  E-value=8.1e-37  Score=293.32  Aligned_cols=213  Identities=33%  Similarity=0.634  Sum_probs=198.8

Q ss_pred             CCCCCCCCeeCCCeEEcCCCCCCcCCCCCCccCcEEecCCCcceeecCCCccCCCCCCcEEeCCCCcceecCCCcCCCcc
Q psy15407         85 DAACPSGCSCDGTRVDCSQRGLKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGEN  164 (604)
Q Consensus        85 ~~~CP~~C~C~~~~l~cs~~~L~~iP~~l~~~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~l~  164 (604)
                      ...||..|.|.++.|+|++++|++||..++..+++|+|++|+|+.|++. .|..+++|++|+|++|+|+.+.+.+|.++.
T Consensus         2 ~~~CP~~C~C~~~~v~c~~~~l~~iP~~l~~~l~~L~l~~n~i~~i~~~-~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~   80 (220)
T 2v9t_B            2 SLHCPAACTCSNNIVDCRGKGLTEIPTNLPETITEIRLEQNTIKVIPPG-AFSPYKKLRRIDLSNNQISELAPDAFQGLR   80 (220)
T ss_dssp             CCCSCTTSEEETTEEECTTSCCSSCCSSCCTTCCEEECCSSCCCEECTT-SSTTCTTCCEEECCSSCCCEECTTTTTTCS
T ss_pred             CCCCCCCCEECCCEEEcCCCCcCcCCCccCcCCCEEECCCCcCCCcCHh-HhhCCCCCCEEECCCCcCCCcCHHHhhCCc
Confidence            3579999999999999999999999999999999999999999999874 499999999999999999999999998875


Q ss_pred             cCCcCCCCCCCCCccccccEEEccCCccccccccccceeeeeeccccCCccccceeecCCCCceeeccCCCCCCCCCCCe
Q psy15407        165 DQGCLGDNYCPPKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQ  244 (604)
Q Consensus       165 ~L~~L~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~i~~l~~~~f~~l~~L~~  244 (604)
                                                                          +|++|+|++|+|+.+++..|..+++|++
T Consensus        81 ----------------------------------------------------~L~~L~Ls~N~l~~l~~~~f~~l~~L~~  108 (220)
T 2v9t_B           81 ----------------------------------------------------SLNSLVLYGNKITELPKSLFEGLFSLQL  108 (220)
T ss_dssp             ----------------------------------------------------SCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             ----------------------------------------------------CCCEEECCCCcCCccCHhHccCCCCCCE
Confidence                                                                7888999999999999999999999999


Q ss_pred             EEecCCcceeeeccccCCCCcccEEEccCCccccCCcccccCcccceeeeccCCCcccccCCCccccccccccccCCccc
Q psy15407        245 LILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIGGNPLYCDCGLAWLSEWVKRDYVEPGIAR  324 (604)
Q Consensus       245 L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~Npl~CdC~l~~l~~~~~~~~~~~~~~~  324 (604)
                      |+|++|+|+.+++.+|..+++|++|+|++|+|+.+++..|..+++|+.|+|++|||.|||.+.||..|++.........+
T Consensus       109 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~l~~l~~~l~~~~~~~~~~~  188 (220)
T 2v9t_B          109 LLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCHLKWLADYLHTNPIETSGAR  188 (220)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECSGGGHHHHHHHHHCCCBCSCCB
T ss_pred             EECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCCCccHHHHHHHHhCCCCccCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999987777667789


Q ss_pred             cCCCCcccccccccCCCCceeecCcc
Q psy15407        325 CTEPASMRDKLLLTAPASSFQCKEKV  350 (604)
Q Consensus       325 C~~P~~l~g~~l~~~~~~~~~C~~~~  350 (604)
                      |+.|..++|+.+.+++.++|.|.-+.
T Consensus       189 C~~P~~l~g~~l~~l~~~~~~c~~~~  214 (220)
T 2v9t_B          189 CTSPRRLANKRIGQIKSKKFRCSAAA  214 (220)
T ss_dssp             EEESGGGTTCBGGGSCGGGCCC----
T ss_pred             cCCchHHcCCchhhCCHHHCcCcccc
Confidence            99999999999999999999997543

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=100.00  E-value=4.1e-36  Score=288.42  Aligned_cols=213  Identities=37%  Similarity=0.761  Sum_probs=199.1

Q ss_pred             CCCCCCCeeCCCeEEcCCCCCCcCCCCCCccCcEEecCCCcceeecCCCccCCCCCCcEEeCCCCcceecCCCcCCCccc
Q psy15407         86 AACPSGCSCDGTRVDCSQRGLKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGEND  165 (604)
Q Consensus        86 ~~CP~~C~C~~~~l~cs~~~L~~iP~~l~~~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~  165 (604)
                      ..||..|+|.++.|+|++++|++||..++..+++|+|++|+|+.+++.++|..+++|++|+|++|+|+.+++.+|.++. 
T Consensus         3 ~~CP~~C~C~~~~l~~s~n~l~~iP~~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~-   81 (220)
T 2v70_A            3 LACPEKCRCEGTTVDCSNQKLNKIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGAS-   81 (220)
T ss_dssp             -CCCTTCEEETTEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCT-
T ss_pred             CCCCCCCEECCCEeEeCCCCcccCccCCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCC-
Confidence            5799999999999999999999999999999999999999999997656799999999999999999999999998875 


Q ss_pred             CCcCCCCCCCCCccccccEEEccCCccccccccccceeeeeeccccCCccccceeecCCCCceeeccCCCCCCCCCCCeE
Q psy15407        166 QGCLGDNYCPPKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQL  245 (604)
Q Consensus       166 L~~L~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~i~~l~~~~f~~l~~L~~L  245 (604)
                                                                         +|++|+|++|+|+.+++..|..+++|++|
T Consensus        82 ---------------------------------------------------~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  110 (220)
T 2v70_A           82 ---------------------------------------------------GVNEILLTSNRLENVQHKMFKGLESLKTL  110 (220)
T ss_dssp             ---------------------------------------------------TCCEEECCSSCCCCCCGGGGTTCSSCCEE
T ss_pred             ---------------------------------------------------CCCEEECCCCccCccCHhHhcCCcCCCEE
Confidence                                                               78889999999999999999999999999


Q ss_pred             EecCCcceeeeccccCCCCcccEEEccCCccccCCcccccCcccceeeeccCCCcccccCCCccccccccccccCCcccc
Q psy15407        246 ILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIGGNPLYCDCGLAWLSEWVKRDYVEPGIARC  325 (604)
Q Consensus       246 ~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~Npl~CdC~l~~l~~~~~~~~~~~~~~~C  325 (604)
                      +|++|+|+.+++.+|..+++|++|+|++|+|+.+++..|..+++|+.|+|++|||.|+|.+.||.+|++......+...|
T Consensus       111 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~l~~~~~~~~~~~~~~~C  190 (220)
T 2v70_A          111 MLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCYLAWLGEWLRKKRIVTGNPRC  190 (220)
T ss_dssp             ECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGGGHHHHHHHHHSCCBCCCCEE
T ss_pred             ECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCchHHHHHHHHhcCccccCCcc
Confidence            99999999999999999999999999999999999889999999999999999999999999999999877666777899


Q ss_pred             CCCCcccccccccCCCCceeecCcc
Q psy15407        326 TEPASMRDKLLLTAPASSFQCKEKV  350 (604)
Q Consensus       326 ~~P~~l~g~~l~~~~~~~~~C~~~~  350 (604)
                      ..|..++|+.+.+++...+.|....
T Consensus       191 ~~P~~l~g~~l~~l~~~~~~~~~~~  215 (220)
T 2v70_A          191 QKPYFLKEIPIQDVAIQDFTCDDAH  215 (220)
T ss_dssp             EESGGGTTEEGGGSCGGGCCCCC--
T ss_pred             CCChHHCCCChhhCCHHHccccccc
Confidence            9999999999999999999887643

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=100.00  E-value=6.6e-33  Score=294.98  Aligned_cols=264  Identities=27%  Similarity=0.467  Sum_probs=210.7

Q ss_pred             CCCCCCCCeeCC--CeEEcCCCCCCcCCCCCCccCcEEecCCCcceeecCCCccCCCCCCcEEeCCCCcceecCCCcCCC
Q psy15407         85 DAACPSGCSCDG--TRVDCSQRGLKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEG  162 (604)
Q Consensus        85 ~~~CP~~C~C~~--~~l~cs~~~L~~iP~~l~~~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~  162 (604)
                      ...||..|.|..  ..|+|++++|++||..++..++.|+|++|+|+.+++. .|.++++|++|+|++|+|+.+++.+|.+
T Consensus        32 ~~~Cp~~C~C~~~~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~-~~~~l~~L~~L~Ls~n~i~~i~~~~~~~  110 (440)
T 3zyj_A           32 AQTCPSVCSCSNQFSKVICVRKNLREVPDGISTNTRLLNLHENQIQIIKVN-SFKHLRHLEILQLSRNHIRTIEIGAFNG  110 (440)
T ss_dssp             -CCCCSSSEECTTSCEEECCSCCCSSCCSCCCTTCSEEECCSCCCCEECTT-TTSSCSSCCEEECCSSCCCEECGGGGTT
T ss_pred             cccCCCCCEeCCCCCEEEeCCCCcCcCCCCCCCCCcEEEccCCcCCeeCHH-HhhCCCCCCEEECCCCcCCccChhhccC
Confidence            457999999974  6899999999999999999999999999999999864 4899999999999999999999889999


Q ss_pred             cccCCcCCCCCCCCC--------ccccccEEEccCCccccc---------------ccc-c--------cceeee-----
Q psy15407        163 ENDQGCLGDNYCPPK--------CTCTVRVLFYDGRAGECY---------------IAV-E--------LFSSRI-----  205 (604)
Q Consensus       163 l~~L~~L~l~~~~~~--------~~~~l~~l~~~~~~~~~~---------------~~~-~--------~~~~~~-----  205 (604)
                      +++|+.|+|++|.+.        .+..|+.+.+..+.....               +.. +        .+....     
T Consensus       111 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L  190 (440)
T 3zyj_A          111 LANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYL  190 (440)
T ss_dssp             CSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEE
T ss_pred             CccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCee
Confidence            999999988887433        334566666654432211               100 0        000000     


Q ss_pred             -----eeccccC-CccccceeecCCCCceeeccCCCCCCCCCCCeEEecCCcceeeeccccCCCCcccEEEccCCccccC
Q psy15407        206 -----RVSYYVG-NYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMI  279 (604)
Q Consensus       206 -----~~~~~~~-~~~~~L~~L~Ls~N~i~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i  279 (604)
                           .+..+.. ....+|++|+|++|+|+.+.+..|..+++|+.|+|++|+|+.+.+.+|..+++|+.|+|++|+|+.+
T Consensus       191 ~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~  270 (440)
T 3zyj_A          191 NLAMCNLREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLL  270 (440)
T ss_dssp             ECTTSCCSSCCCCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCC
T ss_pred             cCCCCcCccccccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCcc
Confidence                 0000000 1123788999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcccccCcccceeeeccCCCcccccCCCcccccccccccc--CCccccCCCCcccccccccCCCCceeecCc
Q psy15407        280 PEGAFADLHAITHLAIGGNPLYCDCGLAWLSEWVKRDYVE--PGIARCTEPASMRDKLLLTAPASSFQCKEK  349 (604)
Q Consensus       280 ~~~~f~~l~~L~~L~L~~Npl~CdC~l~~l~~~~~~~~~~--~~~~~C~~P~~l~g~~l~~~~~~~~~C~~~  349 (604)
                      ++..|..+++|+.|+|++|||.|||++.||..|++.....  ....+|..|+.++|+.+.++....|.|..+
T Consensus       271 ~~~~~~~l~~L~~L~L~~Np~~CdC~l~~l~~~~~~~~~~~~~~~~~C~~P~~l~g~~l~~l~~~~~~C~~P  342 (440)
T 3zyj_A          271 PHDLFTPLHHLERIHLHHNPWNCNCDILWLSWWIKDMAPSNTACCARCNTPPNLKGRYIGELDQNYFTCYAP  342 (440)
T ss_dssp             CTTTTSSCTTCCEEECCSSCEECSSTTHHHHHHHHTTSCSSCSCCCBEEESTTTTTCBCC----CCSCCCCC
T ss_pred             ChhHhccccCCCEEEcCCCCccCCCCchHHHHHHHhccccCCccccCCCChhHhcCccHhHhhhhhccCCCC
Confidence            9999999999999999999999999999999999865332  334789999999999999999999999754

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=100.00  E-value=1.9e-32  Score=292.46  Aligned_cols=264  Identities=30%  Similarity=0.481  Sum_probs=214.4

Q ss_pred             CCCCCCCCeeCC--CeEEcCCCCCCcCCCCCCccCcEEecCCCcceeecCCCccCCCCCCcEEeCCCCcceecCCCcCCC
Q psy15407         85 DAACPSGCSCDG--TRVDCSQRGLKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEG  162 (604)
Q Consensus        85 ~~~CP~~C~C~~--~~l~cs~~~L~~iP~~l~~~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~  162 (604)
                      ...||..|.|..  +.|+|++++|++||..+|..++.|+|++|+|+.+++. .|.++++|++|+|++|+|+.+.+.+|.+
T Consensus        43 ~~~Cp~~C~C~~~~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~-~~~~l~~L~~L~Ls~n~i~~~~~~~~~~  121 (452)
T 3zyi_A           43 PQNCPSVCSCSNQFSKVVCTRRGLSEVPQGIPSNTRYLNLMENNIQMIQAD-TFRHLHHLEVLQLGRNSIRQIEVGAFNG  121 (452)
T ss_dssp             -CCCCTTSEECSSSCEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECTT-TTTTCTTCCEEECCSSCCCEECTTTTTT
T ss_pred             cCCCCCCCEECCCCcEEEECCCCcCccCCCCCCCccEEECcCCcCceECHH-HcCCCCCCCEEECCCCccCCcChhhccC
Confidence            457999999974  6899999999999999999999999999999999764 4899999999999999999999999999


Q ss_pred             cccCCcCCCCCCCCC--------ccccccEEEccCCccccccc---------------c-c--------cceee------
Q psy15407        163 ENDQGCLGDNYCPPK--------CTCTVRVLFYDGRAGECYIA---------------V-E--------LFSSR------  204 (604)
Q Consensus       163 l~~L~~L~l~~~~~~--------~~~~l~~l~~~~~~~~~~~~---------------~-~--------~~~~~------  204 (604)
                      +++|+.|+|++|.+.        .+..|+.+.+..+.......               . +        .+...      
T Consensus       122 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L  201 (452)
T 3zyi_A          122 LASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYL  201 (452)
T ss_dssp             CTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEE
T ss_pred             cccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEE
Confidence            999999999887532        34456666666543221110               0 0        00000      


Q ss_pred             ----eeeccccC-CccccceeecCCCCceeeccCCCCCCCCCCCeEEecCCcceeeeccccCCCCcccEEEccCCccccC
Q psy15407        205 ----IRVSYYVG-NYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMI  279 (604)
Q Consensus       205 ----~~~~~~~~-~~~~~L~~L~Ls~N~i~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i  279 (604)
                          ..+..+.. ....+|++|+|++|+|+.+.+..|..+++|+.|+|++|+|+.+.+.+|..+++|+.|+|++|+|+.+
T Consensus       202 ~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~  281 (452)
T 3zyi_A          202 NLGMCNIKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSL  281 (452)
T ss_dssp             ECTTSCCSSCCCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCC
T ss_pred             ECCCCcccccccccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCcc
Confidence                00000000 0113788999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcccccCcccceeeeccCCCcccccCCCccccccccccc--cCCccccCCCCcccccccccCCCCceeecCc
Q psy15407        280 PEGAFADLHAITHLAIGGNPLYCDCGLAWLSEWVKRDYV--EPGIARCTEPASMRDKLLLTAPASSFQCKEK  349 (604)
Q Consensus       280 ~~~~f~~l~~L~~L~L~~Npl~CdC~l~~l~~~~~~~~~--~~~~~~C~~P~~l~g~~l~~~~~~~~~C~~~  349 (604)
                      ++..|..+++|+.|+|++|||.|||++.||..|++....  .....+|+.|..++|+.+..+....|.|..+
T Consensus       282 ~~~~~~~l~~L~~L~L~~Np~~CdC~~~~l~~~l~~~~~~~~~~~~~C~~P~~l~g~~l~~~~~~~~~C~~P  353 (452)
T 3zyi_A          282 PHDLFTPLRYLVELHLHHNPWNCDCDILWLAWWLREYIPTNSTCCGRCHAPMHMRGRYLVEVDQASFQCSAP  353 (452)
T ss_dssp             CTTSSTTCTTCCEEECCSSCEECSTTTHHHHHHHHHHC---CCSSCBEEESTTTTTCBTTSCCGGGCCCCCC
T ss_pred             ChHHhccccCCCEEEccCCCcCCCCCchHHHHHHHHhCccCCccCcEeCCchHhccchhhccchhhhcccCc
Confidence            999999999999999999999999999999999976432  2234689999999999999999999999754

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=100.00  E-value=1.9e-32  Score=274.14  Aligned_cols=258  Identities=24%  Similarity=0.347  Sum_probs=218.1

Q ss_pred             CCCCCCeeCC---CeEEcCCCCCCcCCCCCCccCcEEecCCCcceeecCCCccCCCCCCcEEeCCCCcceecCCCcCCCc
Q psy15407         87 ACPSGCSCDG---TRVDCSQRGLKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGE  163 (604)
Q Consensus        87 ~CP~~C~C~~---~~l~cs~~~L~~iP~~l~~~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~l  163 (604)
                      +||..|.|..   +.|+|++++|+.||..++..+++|+|++|.|+.+++. .|..+++|++|+|++|+|+.+.+.+|.++
T Consensus         1 ~CP~~C~C~~~~~~~~~c~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~-~~~~~~~L~~L~l~~n~l~~~~~~~~~~l   79 (285)
T 1ozn_A            1 PCPGACVCYNEPKVTTSCPQQGLQAVPVGIPAASQRIFLHGNRISHVPAA-SFRACRNLTILWLHSNVLARIDAAAFTGL   79 (285)
T ss_dssp             CCCTTCEEECSSSCEEECCSSCCSSCCTTCCTTCSEEECTTSCCCEECTT-TTTTCTTCCEEECCSSCCCEECTTTTTTC
T ss_pred             CcCCCceECCCCCeEEEcCcCCcccCCcCCCCCceEEEeeCCcCCccCHH-HcccCCCCCEEECCCCccceeCHhhcCCc
Confidence            4999999964   5799999999999999999999999999999999874 48999999999999999999999999999


Q ss_pred             ccCCcCCCCCCC-CC--------ccccccEEEccCCcccccccc------cc---ceeeeeeccccC---Cccccceeec
Q psy15407        164 NDQGCLGDNYCP-PK--------CTCTVRVLFYDGRAGECYIAV------EL---FSSRIRVSYYVG---NYPVSTMYRD  222 (604)
Q Consensus       164 ~~L~~L~l~~~~-~~--------~~~~l~~l~~~~~~~~~~~~~------~~---~~~~~~~~~~~~---~~~~~L~~L~  222 (604)
                      ++|+.|++++|. ..        .+..++.+.+..+........      ++   ......+..+..   ....+|++|+
T Consensus        80 ~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  159 (285)
T 1ozn_A           80 ALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLF  159 (285)
T ss_dssp             TTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             cCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEE
Confidence            999999999985 32        235677777776543222110      00   001111111111   1124899999


Q ss_pred             CCCCceeeccCCCCCCCCCCCeEEecCCcceeeeccccCCCCcccEEEccCCccccCCcccccCcccceeeeccCCCccc
Q psy15407        223 LSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIGGNPLYC  302 (604)
Q Consensus       223 Ls~N~i~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~Npl~C  302 (604)
                      |++|+|+.+++..|..+++|++|+|++|+|+.+.+..|..+++|+.|+|++|+|+.+++..|..+++|+.|+|++|||.|
T Consensus       160 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c  239 (285)
T 1ozn_A          160 LHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVC  239 (285)
T ss_dssp             CCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEEC
T ss_pred             CCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccC
Confidence            99999999999899999999999999999999999999999999999999999999999889999999999999999999


Q ss_pred             ccCCCccccccccccccCCccccCCCCcccccccccCCCCcee
Q psy15407        303 DCGLAWLSEWVKRDYVEPGIARCTEPASMRDKLLLTAPASSFQ  345 (604)
Q Consensus       303 dC~l~~l~~~~~~~~~~~~~~~C~~P~~l~g~~l~~~~~~~~~  345 (604)
                      +|.+.|+.+|++..........|..|..++|+.+.++...+|.
T Consensus       240 ~~~~~~~~~~l~~~~~~~~~~~c~~p~~l~g~~l~~l~~~~l~  282 (285)
T 1ozn_A          240 DCRARPLWAWLQKFRGSSSEVPCSLPQRLAGRDLKRLAANDLQ  282 (285)
T ss_dssp             SGGGHHHHHHHHHCCSEECCCBEEESGGGTTCBGGGSCGGGSC
T ss_pred             CCCcHHHHHHHHhcccccCccccCCchHhCCcChhhcCHHHhc
Confidence            9999999999988777777789999999999999999887776

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.97  E-value=3.7e-32  Score=255.06  Aligned_cols=186  Identities=51%  Similarity=0.986  Sum_probs=159.0

Q ss_pred             CCCCCCCeeCCCeEEcCCCCCCcCCCCCCccCcEEecCCCcceeecCCCccCCCCCCcEEeCCCCcceecCCCcCCCccc
Q psy15407         86 AACPSGCSCDGTRVDCSQRGLKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGEND  165 (604)
Q Consensus        86 ~~CP~~C~C~~~~l~cs~~~L~~iP~~l~~~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~  165 (604)
                      ..||..|.|.++.|+|++++|++||..++..+++|+|++|.|+.|+.  .|.++++|++|+|++|+|+.+++.+|.    
T Consensus         2 ~~CP~~C~C~~~~l~~~~~~l~~ip~~~~~~l~~L~L~~n~i~~ip~--~~~~l~~L~~L~Ls~N~i~~i~~~~f~----   75 (193)
T 2wfh_A            2 SRCPTECTCLDTVVRCSNKGLKVLPKGIPRDVTELYLDGNQFTLVPK--ELSNYKHLTLIDLSNNRISTLSNQSFS----   75 (193)
T ss_dssp             --CCTTCEEETTEEECTTSCCSSCCSCCCTTCCEEECCSSCCCSCCG--GGGGCTTCCEEECCSSCCCCCCTTTTT----
T ss_pred             CCCCCCCEeCCCEEEcCCCCCCcCCCCCCCCCCEEECCCCcCchhHH--HhhcccCCCEEECCCCcCCEeCHhHcc----
Confidence            46999999999999999999999999999999999999999998874  388888888888888887777665554    


Q ss_pred             CCcCCCCCCCCCccccccEEEccCCccccccccccceeeeeeccccCCccccceeecCCCCceeeccCCCCCCCCCCCeE
Q psy15407        166 QGCLGDNYCPPKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQL  245 (604)
Q Consensus       166 L~~L~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~i~~l~~~~f~~l~~L~~L  245 (604)
                                                                                              ++++|++|
T Consensus        76 ------------------------------------------------------------------------~l~~L~~L   83 (193)
T 2wfh_A           76 ------------------------------------------------------------------------NMTQLLTL   83 (193)
T ss_dssp             ------------------------------------------------------------------------TCTTCCEE
T ss_pred             ------------------------------------------------------------------------CCCCCCEE
Confidence                                                                                    45567777


Q ss_pred             EecCCcceeeeccccCCCCcccEEEccCCccccCCcccccCcccceeeeccCCCcccccCCCccccccccccccCCcccc
Q psy15407        246 ILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIGGNPLYCDCGLAWLSEWVKRDYVEPGIARC  325 (604)
Q Consensus       246 ~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~Npl~CdC~l~~l~~~~~~~~~~~~~~~C  325 (604)
                      +|++|+|+.+++.+|..+++|++|+|++|+|+.+++.+|..+++|+.|+|++|||.|||.+.||..|++......+...|
T Consensus        84 ~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c~l~~l~~~~~~~~~~~~~~~C  163 (193)
T 2wfh_A           84 ILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCDCNMQWLSDWVKSEYKEPGIARC  163 (193)
T ss_dssp             ECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECSGGGHHHHHHHHHSSCCCSCCBE
T ss_pred             ECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecCCcCHHHHHHHHhccCCCCCcCc
Confidence            77777777777778888888888888889999888888999999999999999999999999999999887777777899


Q ss_pred             CCCCcccccccccCCCCceeecCc
Q psy15407        326 TEPASMRDKLLLTAPASSFQCKEK  349 (604)
Q Consensus       326 ~~P~~l~g~~l~~~~~~~~~C~~~  349 (604)
                      +.|..++|+.+.+++...+.|...
T Consensus       164 ~~P~~l~g~~l~~~~~~~~~~~~~  187 (193)
T 2wfh_A          164 AGPGEMADKLLLTTPSKKFTCAAA  187 (193)
T ss_dssp             EESGGGTTCBTTTSCGGGCCC---
T ss_pred             CCchHHCCCCcccCChHHeeehhh
Confidence            999999999999999999988654

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.97  E-value=2.8e-31  Score=249.08  Aligned_cols=189  Identities=50%  Similarity=0.949  Sum_probs=158.9

Q ss_pred             CCCCCCeeCCCeEEcCCCCCCcCCCCCCccCcEEecCCCcceeecCCCccCCCCCCcEEeCCCCcceecCCCcCCCcccC
Q psy15407         87 ACPSGCSCDGTRVDCSQRGLKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQ  166 (604)
Q Consensus        87 ~CP~~C~C~~~~l~cs~~~L~~iP~~l~~~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L  166 (604)
                      .||..|.|.++.|+|++++|++||..++..+++|+|++|+|+.+++.++|..+++|++|+|++|+|+.+.+.+|.     
T Consensus         1 ~CP~~C~C~~~~l~~s~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-----   75 (192)
T 1w8a_A            1 DCPAMCHCEGTTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFE-----   75 (192)
T ss_dssp             CCCTTSEEETTEEECTTSCCSSCCSCCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTT-----
T ss_pred             CcCCCCEECCCEEEcCCCCcCcCccCCCCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcC-----
Confidence            499999999999999999999999999889999999999998887655578888888888888877776665554     


Q ss_pred             CcCCCCCCCCCccccccEEEccCCccccccccccceeeeeeccccCCccccceeecCCCCceeeccCCCCCCCCCCCeEE
Q psy15407        167 GCLGDNYCPPKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLI  246 (604)
Q Consensus       167 ~~L~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~i~~l~~~~f~~l~~L~~L~  246 (604)
                                                                                             .+++|++|+
T Consensus        76 -----------------------------------------------------------------------~l~~L~~L~   84 (192)
T 1w8a_A           76 -----------------------------------------------------------------------GASHIQELQ   84 (192)
T ss_dssp             -----------------------------------------------------------------------TCTTCCEEE
T ss_pred             -----------------------------------------------------------------------CcccCCEEE
Confidence                                                                                   455666677


Q ss_pred             ecCCcceeeeccccCCCCcccEEEccCCccccCCcccccCcccceeeeccCCCcccccCCCccccccccccccCCccccC
Q psy15407        247 LSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIGGNPLYCDCGLAWLSEWVKRDYVEPGIARCT  326 (604)
Q Consensus       247 Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~Npl~CdC~l~~l~~~~~~~~~~~~~~~C~  326 (604)
                      |++|+|+.+++.+|.++++|++|+|++|+|+.+++..|..+++|++|+|++|+|.|+|.+.|+..|++..........|.
T Consensus        85 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~~~~~l~~~~~~~~~~~C~  164 (192)
T 1w8a_A           85 LGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCG  164 (192)
T ss_dssp             CCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHHHHHHHHCCSGGGCBBC
T ss_pred             CCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcchHHHHHHHHcCCCCCCCCCC
Confidence            77777777777777777888888888888888777778888999999999999999999999999998776666778999


Q ss_pred             CCCcccccccccCCCCceeecCccc
Q psy15407        327 EPASMRDKLLLTAPASSFQCKEKVS  351 (604)
Q Consensus       327 ~P~~l~g~~l~~~~~~~~~C~~~~~  351 (604)
                      .|..++|+.+.+++..+|.|.+..+
T Consensus       165 ~P~~l~~~~l~~l~~~~~~C~~~~~  189 (192)
T 1w8a_A          165 APSKVRDVQIKDLPHSEFKCSSENS  189 (192)
T ss_dssp             SSTTTTTSBGGGSCTTTCCCCCC--
T ss_pred             CChHHcCCChhhCcHhhcCcCCCCC
Confidence            9999999999999999999986543

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.97  E-value=8.5e-31  Score=271.07  Aligned_cols=231  Identities=25%  Similarity=0.418  Sum_probs=193.9

Q ss_pred             CCCCCCCCeeCCCeEEcCCCCCCcCCCCCCccCcEEecCCCcceeecCCCccC-CCCCCcEEeCCCCcceecCCCcCCCc
Q psy15407         85 DAACPSGCSCDGTRVDCSQRGLKEIPKDIPLYTTELILNDNEIGKIKSDGLFG-RLPNLIKLDLRRNQVTGIEDNAFEGE  163 (604)
Q Consensus        85 ~~~CP~~C~C~~~~l~cs~~~L~~iP~~l~~~~~~L~L~~N~i~~i~~~~~f~-~l~~L~~L~Ls~N~i~~i~~~~f~~l  163 (604)
                      ...||..|.|..+.|+|++++|+.||..++..++.|+|++|+|+.+++. .|. ++++|++|+|++|+|+.+++.+|.++
T Consensus         9 ~~~Cp~~C~C~~~~l~c~~~~l~~iP~~~~~~l~~L~Ls~N~l~~l~~~-~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l   87 (361)
T 2xot_A            9 VVSCPANCLCASNILSCSKQQLPNVPQSLPSYTALLDLSHNNLSRLRAE-WTPTRLTNLHSLLLSHNHLNFISSEAFVPV   87 (361)
T ss_dssp             CTTCCTTCEEETTEEECCSSCCSSCCSSCCTTCSEEECCSSCCCEECTT-SSSSCCTTCCEEECCSSCCCEECTTTTTTC
T ss_pred             CCCCCCCCEECCCEEEeCCCCcCccCccCCCCCCEEECCCCCCCccChh-hhhhcccccCEEECCCCcCCccChhhccCC
Confidence            4679999999999999999999999999999999999999999999875 477 99999999999999999999999999


Q ss_pred             ccCCcCCCCCCCCCccccccEEEccCCccccccccccceeeeeeccccCCccccceeecCCCCceeeccCCCCCCCCCCC
Q psy15407        164 NDQGCLGDNYCPPKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLS  243 (604)
Q Consensus       164 ~~L~~L~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~i~~l~~~~f~~l~~L~  243 (604)
                      ++|+.|+|++|.+..+..                           ..... ..+|++|+|++|+|+.+++..|..+++|+
T Consensus        88 ~~L~~L~Ls~N~l~~~~~---------------------------~~~~~-l~~L~~L~L~~N~i~~~~~~~~~~l~~L~  139 (361)
T 2xot_A           88 PNLRYLDLSSNHLHTLDE---------------------------FLFSD-LQALEVLLLYNNHIVVVDRNAFEDMAQLQ  139 (361)
T ss_dssp             TTCCEEECCSSCCCEECT---------------------------TTTTT-CTTCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred             CCCCEEECCCCcCCcCCH---------------------------HHhCC-CcCCCEEECCCCcccEECHHHhCCcccCC
Confidence            999999999876432110                           00011 13899999999999999999999999999


Q ss_pred             eEEecCCcceeeecccc---CCCCcccEEEccCCccccCCcccccCccc--ceeeeccCCCcccccCCCcc-cccccccc
Q psy15407        244 QLILSYNKLQCIDRDAL---AGLKSLRIISLHGNDISMIPEGAFADLHA--ITHLAIGGNPLYCDCGLAWL-SEWVKRDY  317 (604)
Q Consensus       244 ~L~Ls~N~l~~i~~~~f---~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~--L~~L~L~~Npl~CdC~l~~l-~~~~~~~~  317 (604)
                      .|+|++|+|+.++...|   ..+++|+.|+|++|+|+.++...|..++.  |+.|+|++|||.|||++.|+ ..|+....
T Consensus       140 ~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C~C~l~~~~~~~~~~~~  219 (361)
T 2xot_A          140 KLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLECDCKLYQLFSHWQYRQL  219 (361)
T ss_dssp             EEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEECCHHHHHHHHHHHHTTC
T ss_pred             EEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCccCCcCcHHHHHHHHHhcC
Confidence            99999999999998888   56999999999999999999888888887  48899999999999999885 56775432


Q ss_pred             c----cCCccccCCCCcccccccccCCCCceeecC
Q psy15407        318 V----EPGIARCTEPASMRDKLLLTAPASSFQCKE  348 (604)
Q Consensus       318 ~----~~~~~~C~~P~~l~g~~l~~~~~~~~~C~~  348 (604)
                      .    ......|..|..+.+..  .+.  .+.|..
T Consensus       220 ~~~~~~~~~~~C~~p~~~~~~~--~~~--~~~C~~  250 (361)
T 2xot_A          220 SSVMDFQEDLYCMHSKKLHNIF--SLD--FFNCSE  250 (361)
T ss_dssp             HHHHTTGGGCEEESSSCCEEGG--GCC--CTTCCS
T ss_pred             CchhccCcCCEeCCChHHcCcc--ccc--cccCCC
Confidence            1    23457899998776532  222  566754

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.97  E-value=6.4e-30  Score=253.52  Aligned_cols=239  Identities=26%  Similarity=0.412  Sum_probs=197.8

Q ss_pred             CCCCeeC--CCeEEcCCCCCCcCCCCCCccCcEEecCCCcceeecCCCccCCCCCCcEEeCCCCcceecCCCcCCCcccC
Q psy15407         89 PSGCSCD--GTRVDCSQRGLKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQ  166 (604)
Q Consensus        89 P~~C~C~--~~~l~cs~~~L~~iP~~l~~~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L  166 (604)
                      +..|.|.  .+.|+|++++|+.||..+|..+++|+|++|+|+.+++. .|.++++|++|+|++|+|+.+++.+|.++++|
T Consensus         9 ~~~C~c~~~~~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L   87 (270)
T 2o6q_A            9 GGVCSCNNNKNSVDCSSKKLTAIPSNIPADTKKLDLQSNKLSSLPSK-AFHRLTKLRLLYLNDNKLQTLPAGIFKELKNL   87 (270)
T ss_dssp             TCSBEEETTTTEEECTTSCCSSCCSCCCTTCSEEECCSSCCSCCCTT-SSSSCTTCCEEECCSSCCSCCCTTTTSSCTTC
T ss_pred             CCCCEeCCCCCEEEccCCCCCccCCCCCCCCCEEECcCCCCCeeCHH-HhcCCCCCCEEECCCCccCeeChhhhcCCCCC
Confidence            5678885  47899999999999999999999999999999999874 49999999999999999999999999999999


Q ss_pred             CcCCCCCCCCCcc--------ccccEEEccCCccccccccccceeeeeeccccCCccccceeecCCCCceeeccCCCCCC
Q psy15407        167 GCLGDNYCPPKCT--------CTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSNFTFSP  238 (604)
Q Consensus       167 ~~L~l~~~~~~~~--------~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~i~~l~~~~f~~  238 (604)
                      +.|++++|.+..+        ..++.+.+..+..         .....  ..... ..+|++|+|++|+|+.+++..|..
T Consensus        88 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l---------~~~~~--~~~~~-l~~L~~L~Ls~n~l~~~~~~~~~~  155 (270)
T 2o6q_A           88 ETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQL---------KSLPP--RVFDS-LTKLTYLSLGYNELQSLPKGVFDK  155 (270)
T ss_dssp             CEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCC---------CCCCT--TTTTT-CTTCCEEECCSSCCCCCCTTTTTT
T ss_pred             CEEECCCCcCCcCCHhHcccccCCCEEECCCCcc---------CeeCH--HHhCc-CcCCCEEECCCCcCCccCHhHccC
Confidence            9999999865432        2344444433321         11110  01112 238999999999999999999999


Q ss_pred             CCCCCeEEecCCcceeeeccccCCCCcccEEEccCCccccCCcccccCcccceeeeccCCCcccccC-CCcccccccccc
Q psy15407        239 LSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIGGNPLYCDCG-LAWLSEWVKRDY  317 (604)
Q Consensus       239 l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~Npl~CdC~-l~~l~~~~~~~~  317 (604)
                      +++|++|+|++|+|+.+++.+|..+++|++|+|++|+|+.+++..|..+++|+.|+|++|||.|+|. +.|+.+|++...
T Consensus       156 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~~~~~~~~l~~~~  235 (270)
T 2o6q_A          156 LTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCNGIIYMAKWLKKKA  235 (270)
T ss_dssp             CTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSSSSSHHHHHHHHHHH
T ss_pred             CcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCCccHHHHHHHHHhhc
Confidence            9999999999999999999999999999999999999999999999999999999999999999998 788999987543


Q ss_pred             c----cCCccccCCCCcccccccccCCCCce
Q psy15407        318 V----EPGIARCTEPASMRDKLLLTAPASSF  344 (604)
Q Consensus       318 ~----~~~~~~C~~P~~l~g~~l~~~~~~~~  344 (604)
                      .    ......|..    .|+.+.++...++
T Consensus       236 ~~~~~~~~~~~C~~----~~~~~~~~~~~~~  262 (270)
T 2o6q_A          236 DEGLGGVDTAGCEK----GGKAVLEITEKDA  262 (270)
T ss_dssp             HTTCSSTTCCBBSS----SCSBGGGCCTTTT
T ss_pred             cccccCccccccCC----CCeEeEEecchhh
Confidence            2    233466764    3677777766553

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.97  E-value=5.4e-30  Score=251.22  Aligned_cols=201  Identities=28%  Similarity=0.484  Sum_probs=180.1

Q ss_pred             CCCCC--Cee--CCCeEEcCCCCCCcCCCCCCccCcEEecCCCcceeecCCCccCCCCCCcEEeCCCCcceecCCCcCCC
Q psy15407         87 ACPSG--CSC--DGTRVDCSQRGLKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEG  162 (604)
Q Consensus        87 ~CP~~--C~C--~~~~l~cs~~~L~~iP~~l~~~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~  162 (604)
                      .||..  |+|  ..+.|+|++++|++||..++..++.|+|++|.|+.+++. .|.++++|++|+|++|+|+.+.+.+|..
T Consensus         3 ~Cp~~~gC~C~~~~~~l~~~~~~l~~~p~~~~~~l~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~   81 (251)
T 3m19_A            3 TCETVTGCTCNEGKKEVDCQGKSLDSVPSGIPADTEKLDLQSTGLATLSDA-TFRGLTKLTWLNLDYNQLQTLSAGVFDD   81 (251)
T ss_dssp             -CHHHHSSEEEGGGTEEECTTCCCSSCCSCCCTTCCEEECTTSCCCCCCTT-TTTTCTTCCEEECTTSCCCCCCTTTTTT
T ss_pred             cCCCCCceEcCCCCeEEecCCCCccccCCCCCCCCCEEEccCCCcCccCHh-HhcCcccCCEEECCCCcCCccCHhHhcc
Confidence            58887  999  357899999999999999999999999999999999874 4999999999999999999999999999


Q ss_pred             cccCCcCCCCCCCCCccccccEEEccCCccccccccccceeeeeeccccCCccccceeecCCCCceeeccCCCCCCCCCC
Q psy15407        163 ENDQGCLGDNYCPPKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKL  242 (604)
Q Consensus       163 l~~L~~L~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~i~~l~~~~f~~l~~L  242 (604)
                      +++|+.|+|++|.+..+..                           ..... ..+|++|+|++|+|+.+++..|..+++|
T Consensus        82 l~~L~~L~L~~n~l~~~~~---------------------------~~~~~-l~~L~~L~L~~N~l~~~~~~~~~~l~~L  133 (251)
T 3m19_A           82 LTELGTLGLANNQLASLPL---------------------------GVFDH-LTQLDKLYLGGNQLKSLPSGVFDRLTKL  133 (251)
T ss_dssp             CTTCCEEECTTSCCCCCCT---------------------------TTTTT-CTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred             CCcCCEEECCCCcccccCh---------------------------hHhcc-cCCCCEEEcCCCcCCCcChhHhccCCcc
Confidence            9999999999876442110                           00011 2389999999999999999999999999


Q ss_pred             CeEEecCCcceeeeccccCCCCcccEEEccCCccccCCcccccCcccceeeeccCCCcccc-cCCCccccccccc
Q psy15407        243 SQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIGGNPLYCD-CGLAWLSEWVKRD  316 (604)
Q Consensus       243 ~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~Npl~Cd-C~l~~l~~~~~~~  316 (604)
                      ++|+|++|+|+.+++.+|..+++|++|+|++|+|+.+++..|..+++|+.|+|++|+|.|+ |.+.|+..|++..
T Consensus       134 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~~l~~~~~~~  208 (251)
T 3m19_A          134 KELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCSRCEILYLSQWIREN  208 (251)
T ss_dssp             CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTTSTTHHHHHHHHHHS
T ss_pred             cEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCCccccHHHHHHHHhc
Confidence            9999999999999999999999999999999999999999999999999999999999999 9999999998754

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.96  E-value=8.8e-30  Score=257.39  Aligned_cols=251  Identities=24%  Similarity=0.363  Sum_probs=191.9

Q ss_pred             CCCCCeeCCCeEEcCCCCCCcCCCCCCccCcEEecCCCcceeecCCCccCCCCCCcEEeCCCCcceecC--CCcCCCccc
Q psy15407         88 CPSGCSCDGTRVDCSQRGLKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIE--DNAFEGEND  165 (604)
Q Consensus        88 CP~~C~C~~~~l~cs~~~L~~iP~~l~~~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i~--~~~f~~l~~  165 (604)
                      ||..|.|.++.|+|++++|++||..++..+++|+|++|+|+.++. .+|.++++|++|+|++|+|+.+.  +.++.++++
T Consensus         1 CP~~C~C~~~~l~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~i~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~   79 (306)
T 2z66_A            1 CPSRCSCSGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPH-GVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTS   79 (306)
T ss_dssp             CCTTCEEETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCCCCT-TTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSC
T ss_pred             CcCCCeeCCCEEEcCCCCcccCCCCCCCCCCEEECCCCccCccCH-hHhhccccCCEEECCCCccCcccCcccccccccc
Confidence            899999999999999999999999999999999999999999986 45899999999999999987653  233334444


Q ss_pred             CCcCCCCCCCC--------------------------------CccccccEEEccCCcccccccc------cc---ceee
Q psy15407        166 QGCLGDNYCPP--------------------------------KCTCTVRVLFYDGRAGECYIAV------EL---FSSR  204 (604)
Q Consensus       166 L~~L~l~~~~~--------------------------------~~~~~l~~l~~~~~~~~~~~~~------~~---~~~~  204 (604)
                      |+.|++++|.+                                ..+..++.+.+..+........      .+   ....
T Consensus        80 L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~  159 (306)
T 2z66_A           80 LKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAG  159 (306)
T ss_dssp             CCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTT
T ss_pred             cCEEECCCCccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCC
Confidence            55555444421                                1223444444443322111100      00   0000


Q ss_pred             eee-----ccccCCccccceeecCCCCceeeccCCCCCCCCCCCeEEecCCcceeeeccccCCCCcccEEEccCCccccC
Q psy15407        205 IRV-----SYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMI  279 (604)
Q Consensus       205 ~~~-----~~~~~~~~~~L~~L~Ls~N~i~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i  279 (604)
                      ..+     ....... .+|++|+|++|+|+.+++..|..+++|++|+|++|+|+.+++..|..+++|+.|+|++|+|+.+
T Consensus       160 n~l~~~~~~~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~  238 (306)
T 2z66_A          160 NSFQENFLPDIFTEL-RNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTS  238 (306)
T ss_dssp             CEEGGGEECSCCTTC-TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBC
T ss_pred             CccccccchhHHhhC-cCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCccc
Confidence            111     1111222 3789999999999999888999999999999999999999888899999999999999999998


Q ss_pred             CcccccCcc-cceeeeccCCCcccccCCCcccccccccc---ccCCccccCCCCcccccccccCC
Q psy15407        280 PEGAFADLH-AITHLAIGGNPLYCDCGLAWLSEWVKRDY---VEPGIARCTEPASMRDKLLLTAP  340 (604)
Q Consensus       280 ~~~~f~~l~-~L~~L~L~~Npl~CdC~l~~l~~~~~~~~---~~~~~~~C~~P~~l~g~~l~~~~  340 (604)
                      ++..|..++ +|+.|+|++|+|.|+|.+.||.+|++...   ......+|..|..++|..+.++.
T Consensus       239 ~~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~p~~~~g~~~~~~~  303 (306)
T 2z66_A          239 KKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQGMPVLSLN  303 (306)
T ss_dssp             SSSSCCCCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGGCBEEESGGGTTCBGGGCC
T ss_pred             CHHHHHhhhccCCEEEccCCCeecccChHHHHHHHHhhhhhhccccccccCCchhhCCceeeeec
Confidence            888888884 89999999999999999999999987543   24456899999999999988774

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.96  E-value=2.5e-29  Score=270.29  Aligned_cols=260  Identities=25%  Similarity=0.420  Sum_probs=198.3

Q ss_pred             CCCCCCeeCC--CeEEcCCCCCCcCCCCCCccCcEEecCCCcceeecCCCccCCCCCCcEEeCCCCcceecCCCcCCCcc
Q psy15407         87 ACPSGCSCDG--TRVDCSQRGLKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGEN  164 (604)
Q Consensus        87 ~CP~~C~C~~--~~l~cs~~~L~~iP~~l~~~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~l~  164 (604)
                      .||..|.|..  +.|+|++++|++||..+|..++.|+|++|+|+.+++. .|.++++|++|+|++|+|+.+.+.+|.+++
T Consensus         2 ~Cp~~C~C~~~~~~v~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~   80 (477)
T 2id5_A            2 GCPPRCECSAQDRAVLCHRKRFVAVPEGIPTETRLLDLGKNRIKTLNQD-EFASFPHLEELELNENIVSAVEPGAFNNLF   80 (477)
T ss_dssp             CCSTTCEEETTTTEEECCSCCCSSCCSCCCTTCSEEECCSSCCCEECTT-TTTTCTTCCEEECTTSCCCEECTTTTTTCT
T ss_pred             cccCCCeECCCCCEEEeCCCCcCcCCCCCCCCCcEEECCCCccceECHh-HccCCCCCCEEECCCCccCEeChhhhhCCc
Confidence            6999999964  6899999999999999999999999999999999764 378888888888888888887777777777


Q ss_pred             cCCcCCCCCCCCC--------ccccccEEEccCCccc---------------------------------------cccc
Q psy15407        165 DQGCLGDNYCPPK--------CTCTVRVLFYDGRAGE---------------------------------------CYIA  197 (604)
Q Consensus       165 ~L~~L~l~~~~~~--------~~~~l~~l~~~~~~~~---------------------------------------~~~~  197 (604)
                      +|+.|+|++|.+.        .+..|+.+.+..+...                                       +.+.
T Consensus        81 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  160 (477)
T 2id5_A           81 NLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLE  160 (477)
T ss_dssp             TCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEE
T ss_pred             cCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECC
Confidence            7777777665321        1223333333221100                                       0000


Q ss_pred             cccce------------------------ee-------------e-----------------------------eeccc-
Q psy15407        198 VELFS------------------------SR-------------I-----------------------------RVSYY-  210 (604)
Q Consensus       198 ~~~~~------------------------~~-------------~-----------------------------~~~~~-  210 (604)
                      .+.+.                        ..             .                             .+..+ 
T Consensus       161 ~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~  240 (477)
T 2id5_A          161 KCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVP  240 (477)
T ss_dssp             SCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCC
T ss_pred             CCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccC
Confidence            00000                        00             0                             00000 


Q ss_pred             ---cCCccccceeecCCCCceeeccCCCCCCCCCCCeEEecCCcceeeeccccCCCCcccEEEccCCccccCCcccccCc
Q psy15407        211 ---VGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADL  287 (604)
Q Consensus       211 ---~~~~~~~L~~L~Ls~N~i~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l  287 (604)
                         ... ..+|++|+|++|.|+.+++..|..+++|++|+|++|+|+.+.+.+|..+++|+.|+|++|+|+.+++..|..+
T Consensus       241 ~~~~~~-l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l  319 (477)
T 2id5_A          241 YLAVRH-LVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSV  319 (477)
T ss_dssp             HHHHTT-CTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCG
T ss_pred             HHHhcC-ccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCC
Confidence               011 1368889999999999999899999999999999999999999999999999999999999999999999999


Q ss_pred             ccceeeeccCCCcccccCCCccccccccccccCCccccCCCCcccccccccCCC----CceeecC
Q psy15407        288 HAITHLAIGGNPLYCDCGLAWLSEWVKRDYVEPGIARCTEPASMRDKLLLTAPA----SSFQCKE  348 (604)
Q Consensus       288 ~~L~~L~L~~Npl~CdC~l~~l~~~~~~~~~~~~~~~C~~P~~l~g~~l~~~~~----~~~~C~~  348 (604)
                      ++|+.|+|++|||.|||.+.|+.+|............|..|..++|+.+.+++.    ..|.|..
T Consensus       320 ~~L~~L~l~~N~l~c~c~~~~~~~~~~~~~~~~~~~~C~~p~~~~g~~l~~~~~~~~~~~~~C~~  384 (477)
T 2id5_A          320 GNLETLILDSNPLACDCRLLWVFRRRWRLNFNRQQPTCATPEFVQGKEFKDFPDVLLPNYFTCRR  384 (477)
T ss_dssp             GGCCEEECCSSCEECSGGGHHHHTTTTSSCCTTCCCBEEESGGGTTCBGGGSCSSCCTTSSCCEE
T ss_pred             cccCEEEccCCCccCccchHhHHhhhhccccCccCceeCCchHHcCCchhhCccccccceeEecc
Confidence            999999999999999999999998876655555668999999999999887653    3466653

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.96  E-value=1e-28  Score=238.36  Aligned_cols=199  Identities=33%  Similarity=0.603  Sum_probs=173.9

Q ss_pred             CCCCCCeeCCCeEEcCCCCCCcCCCCCCccCcEEecCCCcceeecCCCccCCCCCCcEEeCCCCcceecCCCcCCCcccC
Q psy15407         87 ACPSGCSCDGTRVDCSQRGLKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQ  166 (604)
Q Consensus        87 ~CP~~C~C~~~~l~cs~~~L~~iP~~l~~~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L  166 (604)
                      .-...|.|.++.|+|++++|++||..++..+++|+|++|.|+.+.+. .|..+++|++|+|++|+|+.+++.+|.+++  
T Consensus        12 ~~~~~~~Cs~~~v~c~~~~l~~ip~~~~~~L~~L~Ls~n~i~~~~~~-~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~--   88 (229)
T 3e6j_A           12 ACPSQCSCSGTTVDCRSKRHASVPAGIPTNAQILYLHDNQITKLEPG-VFDSLINLKELYLGSNQLGALPVGVFDSLT--   88 (229)
T ss_dssp             CCCTTCEEETTEEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTT-TTTTCTTCCEEECCSSCCCCCCTTTTTTCT--
T ss_pred             cCCCCCEEeCCEeEccCCCcCccCCCCCCCCCEEEcCCCccCccCHH-HhhCccCCcEEECCCCCCCCcChhhcccCC--
Confidence            34678999999999999999999999999999999999999999764 499999999999999999999999888775  


Q ss_pred             CcCCCCCCCCCccccccEEEccCCccccccccccceeeeeeccccCCccccceeecCCCCceeeccCCCCCCCCCCCeEE
Q psy15407        167 GCLGDNYCPPKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLI  246 (604)
Q Consensus       167 ~~L~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~i~~l~~~~f~~l~~L~~L~  246 (604)
                                                                        +|++|+|++|+|+.+++..|..+++|++|+
T Consensus        89 --------------------------------------------------~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~  118 (229)
T 3e6j_A           89 --------------------------------------------------QLTVLDLGTNQLTVLPSAVFDRLVHLKELF  118 (229)
T ss_dssp             --------------------------------------------------TCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             --------------------------------------------------CcCEEECCCCcCCccChhHhCcchhhCeEe
Confidence                                                              788899999999999999999999999999


Q ss_pred             ecCCcceeeeccccCCCCcccEEEccCCccccCCcccccCcccceeeeccCCCcccccC-CCcccccccccc--------
Q psy15407        247 LSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIGGNPLYCDCG-LAWLSEWVKRDY--------  317 (604)
Q Consensus       247 Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~Npl~CdC~-l~~l~~~~~~~~--------  317 (604)
                      |++|+|+.| +..+..+++|++|+|++|+|+.+++..|..+++|+.|+|++|||.|+|. +.|+..|+....        
T Consensus       119 Ls~N~l~~l-p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~~~~l~~~~~~~~~~~~~~~g  197 (229)
T 3e6j_A          119 MCCNKLTEL-PRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECRDIMYLRNWVADHTSIAMRWDG  197 (229)
T ss_dssp             CCSSCCCSC-CTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBGGGHHHHHHHHHCGGGEEEESS
T ss_pred             ccCCccccc-CcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcchhHHHHHHHHhCccccccccC
Confidence            999999988 4567899999999999999999999999999999999999999999996 899999986432        


Q ss_pred             ---ccCCccccCCCCcccccccccCCCCc
Q psy15407        318 ---VEPGIARCTEPASMRDKLLLTAPASS  343 (604)
Q Consensus       318 ---~~~~~~~C~~P~~l~g~~l~~~~~~~  343 (604)
                         .......|+.|    |+.+..+...+
T Consensus       198 ~~v~~~~~~~C~~~----~~~~~~~~~~~  222 (229)
T 3e6j_A          198 KAVNDPDSAKCAGT----NTPVRAVTEAS  222 (229)
T ss_dssp             SEEECTTCSBBTTT----CCBGGGCCGGG
T ss_pred             cccCCCCcCccCCC----Cccceeccccc
Confidence               13345667776    44455444333

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.95  E-value=1.2e-27  Score=227.51  Aligned_cols=175  Identities=33%  Similarity=0.633  Sum_probs=163.3

Q ss_pred             CCCCCeeCCCeEEcCCCCCCcCCCCCCccCcEEecCCCcceeecCCCccCCCCCCcEEeCCCCcceecCCCcCCCcccCC
Q psy15407         88 CPSGCSCDGTRVDCSQRGLKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQG  167 (604)
Q Consensus        88 CP~~C~C~~~~l~cs~~~L~~iP~~l~~~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~  167 (604)
                      ||..|.|.++.|+|++++++++|..++..+++|+|++|+|+.+++. +|..+++|++|+|++|+|+.+++..|..++   
T Consensus         1 Cp~~C~C~~~~v~c~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~---   76 (208)
T 2o6s_A            1 CPSRCSCSGTTVECYSQGRTSVPTGIPAQTTYLDLETNSLKSLPNG-VFDELTSLTQLYLGGNKLQSLPNGVFNKLT---   76 (208)
T ss_dssp             CCTTCEEETTEEECCSSCCSSCCSCCCTTCSEEECCSSCCCCCCTT-TTTTCTTCSEEECCSSCCCCCCTTTTTTCT---
T ss_pred             CcCCCEECCCEEEecCCCccCCCCCCCCCCcEEEcCCCccCcCChh-hhcccccCcEEECCCCccCccChhhcCCCC---
Confidence            8999999999999999999999999999999999999999999874 589999999999999999999988887764   


Q ss_pred             cCCCCCCCCCccccccEEEccCCccccccccccceeeeeeccccCCccccceeecCCCCceeeccCCCCCCCCCCCeEEe
Q psy15407        168 CLGDNYCPPKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLIL  247 (604)
Q Consensus       168 ~L~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L  247 (604)
                                                                       +|++|+|++|+|+.+++..|..+++|++|+|
T Consensus        77 -------------------------------------------------~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  107 (208)
T 2o6s_A           77 -------------------------------------------------SLTYLNLSTNQLQSLPNGVFDKLTQLKELAL  107 (208)
T ss_dssp             -------------------------------------------------TCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             -------------------------------------------------CcCEEECCCCcCCccCHhHhcCccCCCEEEc
Confidence                                                             7888999999999999989999999999999


Q ss_pred             cCCcceeeeccccCCCCcccEEEccCCccccCCcccccCcccceeeeccCCCcccccC-CCcccccccc
Q psy15407        248 SYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIGGNPLYCDCG-LAWLSEWVKR  315 (604)
Q Consensus       248 s~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~Npl~CdC~-l~~l~~~~~~  315 (604)
                      ++|+|+.+++..|..+++|++|+|++|+|+.+++..|..+++|+.|+|++|+|.|+|. +.++..|...
T Consensus       108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~l~~L~~~~n~  176 (208)
T 2o6s_A          108 NTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGIRYLSEWINK  176 (208)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCCTTTTHHHHHHHHH
T ss_pred             CCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeecCCCCHHHHHHHHHh
Confidence            9999999999999999999999999999999999989999999999999999999997 7777666543

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.95  E-value=1.6e-27  Score=238.45  Aligned_cols=212  Identities=22%  Similarity=0.304  Sum_probs=173.3

Q ss_pred             CCeEEcCCCCCCcCCCCCCccCcEEecCCCcceeecCCCccCCCCCCcEEeCCCCcceecCCCcCCCcccCCcCCCCCCC
Q psy15407         96 GTRVDCSQRGLKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDNYCP  175 (604)
Q Consensus        96 ~~~l~cs~~~L~~iP~~l~~~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~l~~~~  175 (604)
                      .+.|+|++++|++||..++..++.|+|++|.|+.+++. .|..+++|++|+|++|+|+.+++.  ..+++|+.|++++|.
T Consensus        12 l~~l~~~~~~l~~ip~~~~~~l~~L~L~~N~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~~L~Ls~N~   88 (290)
T 1p9a_G           12 HLEVNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLA-TLMPYTRLTQLNLDRAELTKLQVD--GTLPVLGTLDLSHNQ   88 (290)
T ss_dssp             CCEEECTTSCCSSCCSCCCTTCCEEECTTSCCSEEEGG-GGTTCTTCCEEECTTSCCCEEECC--SCCTTCCEEECCSSC
T ss_pred             ccEEECCCCCCCcCCCCCCCCCCEEEcCCCcCCccCHH-HhhcCCCCCEEECCCCccCcccCC--CCCCcCCEEECCCCc
Confidence            48999999999999999999999999999999999764 499999999999999999999774  789999999999997


Q ss_pred             CCccccccEEEccCCccccccccccceeeeeeccccCCccccceeecCCCCceeeccCCCCCCCCCCCeEEecCCcceee
Q psy15407        176 PKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCI  255 (604)
Q Consensus       176 ~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~i~~l~~~~f~~l~~L~~L~Ls~N~l~~i  255 (604)
                      +..+...  +.....+..+.+..+.+.....  .....+ .+|++|+|++|+|+.+++..|..+++|+.|+|++|+|+.+
T Consensus        89 l~~l~~~--~~~l~~L~~L~l~~N~l~~l~~--~~~~~l-~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l  163 (290)
T 1p9a_G           89 LQSLPLL--GQTLPALTVLDVSFNRLTSLPL--GALRGL-GELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTEL  163 (290)
T ss_dssp             CSSCCCC--TTTCTTCCEEECCSSCCCCCCS--STTTTC-TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCC
T ss_pred             CCcCchh--hccCCCCCEEECCCCcCcccCH--HHHcCC-CCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCcc
Confidence            6543320  0001112222222222221110  011122 3899999999999999999999999999999999999999


Q ss_pred             eccccCCCCcccEEEccCCccccCCcccccCcccceeeeccCCCcccccCCCccccccccc
Q psy15407        256 DRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIGGNPLYCDCGLAWLSEWVKRD  316 (604)
Q Consensus       256 ~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~Npl~CdC~l~~l~~~~~~~  316 (604)
                      ++..|..+++|++|+|++|+|+.||..+| .+.+|+.|+|++|||.|+|.+.||.+|++..
T Consensus       164 ~~~~~~~l~~L~~L~L~~N~l~~ip~~~~-~~~~L~~l~L~~Np~~C~c~~~~l~~wl~~~  223 (290)
T 1p9a_G          164 PAGLLNGLENLDTLLLQENSLYTIPKGFF-GSHLLPFAFLHGNPWLCNCEILYFRRWLQDN  223 (290)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCCCCCTTTT-TTCCCSEEECCSCCBCCSGGGHHHHHHHHHT
T ss_pred             CHHHhcCcCCCCEEECCCCcCCccChhhc-ccccCCeEEeCCCCccCcCccHHHHHHHHhC
Confidence            99999999999999999999999998765 4668999999999999999999999999864

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.94  E-value=4.4e-26  Score=226.67  Aligned_cols=234  Identities=25%  Similarity=0.413  Sum_probs=176.8

Q ss_pred             CeeC--CCeEEcCCCCCCcCCCCCCccCcEEecCCCcceeecCCCccCCCCCCcEEeCCCCcceecCCCcCCCcccCCcC
Q psy15407         92 CSCD--GTRVDCSQRGLKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCL  169 (604)
Q Consensus        92 C~C~--~~~l~cs~~~L~~iP~~l~~~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L  169 (604)
                      |.|.  ...++|++.++++||..+|..+++|+|++|.|+.+++. .|.++++|++|+|++|+|+.+.+.+|.++++|+.|
T Consensus         3 C~~~~~~~~~~c~~~~l~~ip~~l~~~l~~L~ls~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L   81 (276)
T 2z62_A            3 CVEVVPNITYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSY-SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTL   81 (276)
T ss_dssp             SEEEETTTEEECTTSCCSSCCSSSCTTCCEEECTTCCCCEECTT-TTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEE
T ss_pred             ceeccCCceEEecCCCccccCCCCCCCccEEECCCCcccccCHh-HhccccCCcEEECCCCcCCccCHHHccCCcCCCEE
Confidence            4543  45789999999999999998999999999999998764 48889999999999999999998899999999999


Q ss_pred             CCCCCCCC--------ccccccEEEccCCccccc---------------cccccceeeeeeccccCCccccceeecCCCC
Q psy15407        170 GDNYCPPK--------CTCTVRVLFYDGRAGECY---------------IAVELFSSRIRVSYYVGNYPVSTMYRDLSNN  226 (604)
Q Consensus       170 ~l~~~~~~--------~~~~l~~l~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N  226 (604)
                      ++++|.+.        .+..++.+.+..+.....               +..+.+... .+......+ .+|++|+|++|
T Consensus        82 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~l~~~~~~l-~~L~~L~Ls~N  159 (276)
T 2z62_A           82 ILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSF-KLPEYFSNL-TNLEHLDLSSN  159 (276)
T ss_dssp             ECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCC-CCCGGGGGC-TTCCEEECCSS
T ss_pred             ECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCcccee-cCchhhccC-CCCCEEECCCC
Confidence            99888543        334566666654422211               111111100 011111122 37888888888


Q ss_pred             ceeeccCCCCCCCCCCC----eEEecCCcceeeeccccCCCCcccEEEccCCccccCCcccccCcccceeeeccCCCccc
Q psy15407        227 QIGFLSNFTFSPLSKLS----QLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIGGNPLYC  302 (604)
Q Consensus       227 ~i~~l~~~~f~~l~~L~----~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~Npl~C  302 (604)
                      +|+.+++..|..+.+|+    .|+|++|+|+.+++..|... +|+.|+|++|+|+.+++..|..+++|+.|+|++|||.|
T Consensus       160 ~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c  238 (276)
T 2z62_A          160 KIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC  238 (276)
T ss_dssp             CCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCSC-CEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCC
T ss_pred             CCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCCC-cccEEECCCCceeecCHhHhcccccccEEEccCCcccc
Confidence            88888777777776666    78888888888877777654 89999999999999999999999999999999999999


Q ss_pred             ccC-CCccccccccccc-cCCccccCCCC
Q psy15407        303 DCG-LAWLSEWVKRDYV-EPGIARCTEPA  329 (604)
Q Consensus       303 dC~-l~~l~~~~~~~~~-~~~~~~C~~P~  329 (604)
                      +|. +.|+..|++.... ..+...|..|.
T Consensus       239 ~c~~l~~l~~~~~~~~~~~~~~~~C~~~~  267 (276)
T 2z62_A          239 SCPRIDYLSRWLNKNSQKEQGSAKCSGSG  267 (276)
T ss_dssp             CTTTTHHHHHHHHHTGGGBCSCCBBTTTC
T ss_pred             cCCchHHHHHHHHhcccccCCCceeeCCC
Confidence            996 8899999876443 34456788774

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.92  E-value=8.7e-25  Score=233.37  Aligned_cols=114  Identities=29%  Similarity=0.612  Sum_probs=89.9

Q ss_pred             cceeecCCCCceeeccCCCCCCCCCCCeEEecCCcceeeeccccCCCCcccEEEccCCccccCCcccccCcccceeeecc
Q psy15407        217 STMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIG  296 (604)
Q Consensus       217 ~L~~L~Ls~N~i~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~  296 (604)
                      +|++|+|++|+|+.+++..|..+++|++|+|++|+|+.+.+.+|..+++|++|+|++|+|+.+++..|..+++|+.|+|+
T Consensus       324 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~  403 (455)
T 3v47_A          324 HLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLH  403 (455)
T ss_dssp             TCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred             cCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEcc
Confidence            45566666666666666667777777777777777877777788888888999999999999998888999999999999


Q ss_pred             CCCcccccC-CCccccccccccc-cCCccccCCCCc
Q psy15407        297 GNPLYCDCG-LAWLSEWVKRDYV-EPGIARCTEPAS  330 (604)
Q Consensus       297 ~Npl~CdC~-l~~l~~~~~~~~~-~~~~~~C~~P~~  330 (604)
                      +|||.|+|. +.|+..|++.... ......|..|..
T Consensus       404 ~N~l~~~~~~~~~l~~~l~~~~~~~~~~~~c~~~~~  439 (455)
T 3v47_A          404 TNPWDCSCPRIDYLSRWLNKNSQKEQGSAKCSGSGK  439 (455)
T ss_dssp             SSCBCCCTTTTHHHHHHHHHTTTTEESCCBBTTTCC
T ss_pred             CCCcccCCCcchHHHHHHHhCccceeeeeeecCCCc
Confidence            999999998 7899999875433 344567777643

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.92  E-value=2e-25  Score=248.37  Aligned_cols=235  Identities=21%  Similarity=0.268  Sum_probs=177.4

Q ss_pred             CeEEcCCCCCCcCC---CCC--CccCcEEecCCCcceeecCCCccCCCCCCcEEeCCCCcceec-CCCcCCCcccCCcCC
Q psy15407         97 TRVDCSQRGLKEIP---KDI--PLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGI-EDNAFEGENDQGCLG  170 (604)
Q Consensus        97 ~~l~cs~~~L~~iP---~~l--~~~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i-~~~~f~~l~~L~~L~  170 (604)
                      +.+++++|.+..+.   ..+  ...++.|++..|.+..++..  |..+++|+.++++.|++..+ +...|..+.+|+.++
T Consensus       374 ~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~--~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~  451 (635)
T 4g8a_A          374 EFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSN--FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLD  451 (635)
T ss_dssp             CEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSC--CTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEE
T ss_pred             ccchhhccccccccccccchhhhhhhhhhhcccccccccccc--ccccccccchhhhhcccccccccccccccccccccc
Confidence            67888888886432   211  34567788888888777654  77778888888877765554 445677777777777


Q ss_pred             CCCCCCC--------ccccccEEEccCCccccccccccceeeeeeccccCCccccceeecCCCCceeeccCCCCCCCCCC
Q psy15407        171 DNYCPPK--------CTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKL  242 (604)
Q Consensus       171 l~~~~~~--------~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~i~~l~~~~f~~l~~L  242 (604)
                      ++.|...        ....+..+.+..+.....+          ........ .+|++|+|++|+|+.+++..|.++++|
T Consensus       452 ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~----------~~~~~~~l-~~L~~L~Ls~N~L~~l~~~~f~~l~~L  520 (635)
T 4g8a_A          452 ISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENF----------LPDIFTEL-RNLTFLDLSQCQLEQLSPTAFNSLSSL  520 (635)
T ss_dssp             CTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGE----------ECSCCTTC-TTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred             ccccccccccccccccchhhhhhhhhhccccccc----------Cchhhhhc-cccCEEECCCCccCCcChHHHcCCCCC
Confidence            7766432        1223333433333211100          00111122 389999999999999999999999999


Q ss_pred             CeEEecCCcceeeeccccCCCCcccEEEccCCccccCCcccccCc-ccceeeeccCCCcccccCCCccccccccccc---
Q psy15407        243 SQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADL-HAITHLAIGGNPLYCDCGLAWLSEWVKRDYV---  318 (604)
Q Consensus       243 ~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l-~~L~~L~L~~Npl~CdC~l~~l~~~~~~~~~---  318 (604)
                      ++|+|++|+|+.+++.+|.++++|++|+|++|+|+.+++..|..+ ++|+.|+|++|||.|||++.||.+|++....   
T Consensus       521 ~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~~~~~~~wl~~~~~~~~  600 (635)
T 4g8a_A          521 QVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLV  600 (635)
T ss_dssp             CEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGGGHHHHHHHHHTTTTBS
T ss_pred             CEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCCcHHHHHHHHhCCCccC
Confidence            999999999999999999999999999999999999999999888 6899999999999999999999999976542   


Q ss_pred             cCCccccCCCCcccccccccCCCCceeec
Q psy15407        319 EPGIARCTEPASMRDKLLLTAPASSFQCK  347 (604)
Q Consensus       319 ~~~~~~C~~P~~l~g~~l~~~~~~~~~C~  347 (604)
                      ....++|++|+.++|+.+.++.   +.|+
T Consensus       601 ~~~~~~C~~P~~~~g~~l~~~~---~~C~  626 (635)
T 4g8a_A          601 EVERMECATPSDKQGMPVLSLN---ITCQ  626 (635)
T ss_dssp             CGGGCBBCSSTTTTTCBGGGCC---CCC-
T ss_pred             CCCCceeCCchHHCCCEeeeec---cCCC
Confidence            3456799999999999999884   4563

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.92  E-value=3.7e-25  Score=248.49  Aligned_cols=250  Identities=17%  Similarity=0.201  Sum_probs=161.2

Q ss_pred             CeEEcCCCCCCcCCC-CC--CccCcEEecCCCccee-ecCCCccCCCCCCcEEeCCCCcceecCCCcCCCcccCCcCCCC
Q psy15407         97 TRVDCSQRGLKEIPK-DI--PLYTTELILNDNEIGK-IKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDN  172 (604)
Q Consensus        97 ~~l~cs~~~L~~iP~-~l--~~~~~~L~L~~N~i~~-i~~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~l~  172 (604)
                      +.|++++|+|+.++. .+  ...+++|+|++|.|+. ++. ..|.++++|++|+|++|+|+.+.+.+|..+++|+.|+++
T Consensus       384 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~  462 (680)
T 1ziw_A          384 HILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTG-QEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLR  462 (680)
T ss_dssp             CEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCS-GGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECT
T ss_pred             ceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCc-ccccCcccccEEecCCCCcceeChhhhhcCcccccchhc
Confidence            456777777776543 33  3456778888888764 443 347778888888888888887777777777777777777


Q ss_pred             CCCC----------CccccccEEEccCCcccccccc------c---cceeeeeeccc------------cCCccccceee
Q psy15407        173 YCPP----------KCTCTVRVLFYDGRAGECYIAV------E---LFSSRIRVSYY------------VGNYPVSTMYR  221 (604)
Q Consensus       173 ~~~~----------~~~~~l~~l~~~~~~~~~~~~~------~---~~~~~~~~~~~------------~~~~~~~L~~L  221 (604)
                      +|..          .....++.+.+..+........      .   +......+..+            .... .+|++|
T Consensus       463 ~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l-~~L~~L  541 (680)
T 1ziw_A          463 RVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGL-SHLHIL  541 (680)
T ss_dssp             TSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTC-TTCCEE
T ss_pred             cccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCC-CCCCEE
Confidence            6643          2334566666665432211110      0   00000111111            1122 389999


Q ss_pred             cCCCCceeeccCCCCCCCCCCCeEEecCCcceeeeccccCCCCcccEEEccCCccccCCccccc-CcccceeeeccCCCc
Q psy15407        222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFA-DLHAITHLAIGGNPL  300 (604)
Q Consensus       222 ~Ls~N~i~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~-~l~~L~~L~L~~Npl  300 (604)
                      +|++|+|+.+++..|.++++|++|+|++|+|+.+++..|..+++|+.|+|++|+|+.+++..|. .+++|+.|+|++|||
T Consensus       542 ~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~  621 (680)
T 1ziw_A          542 NLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPF  621 (680)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCC
T ss_pred             ECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCc
Confidence            9999999999999999999999999999999999999999999999999999999999998887 789999999999999


Q ss_pred             ccccCC-Ccccccccccccc----CCccccCCCCcccccccccCCCCceeecC
Q psy15407        301 YCDCGL-AWLSEWVKRDYVE----PGIARCTEPASMRDKLLLTAPASSFQCKE  348 (604)
Q Consensus       301 ~CdC~l-~~l~~~~~~~~~~----~~~~~C~~P~~l~g~~l~~~~~~~~~C~~  348 (604)
                      .|||++ .||.+|++.....    ....+|+.|+.++|+.+.++++..+.|..
T Consensus       622 ~c~c~~~~~~~~~~~~~~~~~~~~~~~~~C~~p~~~~g~~l~~~~~~~~~~~~  674 (680)
T 1ziw_A          622 DCTCESIAWFVNWINETHTNIPELSSHYLCNTPPHYHGFPVRLFDTSSCKDSA  674 (680)
T ss_dssp             CBCCCCCSSEECCSSCC------------------------------------
T ss_pred             ccCCccHHHHHHHHHhcCcccccccCCcEECCchHHCCCcccccChhhcCCCc
Confidence            999996 9999999765432    23569999999999999999888777644

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.92  E-value=9.8e-26  Score=232.07  Aligned_cols=205  Identities=20%  Similarity=0.285  Sum_probs=152.2

Q ss_pred             CCCCC-CeeCCCeEEcCCCCCCcCCCCCCccCcEEecCCCcceeecCCCccCCCCCCcEEeCCCCcc-eecCCCcCCCcc
Q psy15407         87 ACPSG-CSCDGTRVDCSQRGLKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQV-TGIEDNAFEGEN  164 (604)
Q Consensus        87 ~CP~~-C~C~~~~l~cs~~~L~~iP~~l~~~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i-~~i~~~~f~~l~  164 (604)
                      .||.. |+|.+++|+|++++|++||..+|.++++|+|++|+|+.|++. +|.+|++|++|+|++|+| +.|++++|.+++
T Consensus         1 gCp~~~C~C~~~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~~i~~~-~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~   79 (350)
T 4ay9_X            1 GCHHRICHCSNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKG-AFSGFGDLEKIEISQNDVLEVIEADVFSNLP   79 (350)
T ss_dssp             -CCCSSSEEETTEEEEESTTCCSCCTTCCTTCSEEEEESCCCSEECTT-SSTTCTTCCEEEEECCTTCCEECTTSBCSCT
T ss_pred             CCCCCccEeeCCEEEecCCCCCccCcCcCCCCCEEEccCCcCCCcCHH-HHcCCCCCCEEECcCCCCCCccChhHhhcch
Confidence            48976 999999999999999999999999999999999999999874 599999999999999997 558889999998


Q ss_pred             cCCcC-CCCCCC--------CCccccccEEEccCCccccccccccce-------ee---eeecccc----CCccccceee
Q psy15407        165 DQGCL-GDNYCP--------PKCTCTVRVLFYDGRAGECYIAVELFS-------SR---IRVSYYV----GNYPVSTMYR  221 (604)
Q Consensus       165 ~L~~L-~l~~~~--------~~~~~~l~~l~~~~~~~~~~~~~~~~~-------~~---~~~~~~~----~~~~~~L~~L  221 (604)
                      +|..+ .+..|.        +..+..|+.+.+..+............       ..   ..+..+.    ......++.|
T Consensus        80 ~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L  159 (350)
T 4ay9_X           80 KLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVIL  159 (350)
T ss_dssp             TCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEE
T ss_pred             hhhhhhcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhh
Confidence            87653 333342        233456666666544322111110000       00   0111111    1122367889


Q ss_pred             cCCCCceeeccCCCCCCCCCCCeEEec-CCcceeeeccccCCCCcccEEEccCCccccCCcccccCcccceee
Q psy15407        222 DLSNNQIGFLSNFTFSPLSKLSQLILS-YNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHL  293 (604)
Q Consensus       222 ~Ls~N~i~~l~~~~f~~l~~L~~L~Ls-~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L  293 (604)
                      +|++|+|+.|++.+|.. .+|++|+|+ +|.|+.|++++|.++++|++|+|++|+|+.||+..|..|++|+.+
T Consensus       160 ~L~~N~i~~i~~~~f~~-~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~~L~~L~~l  231 (350)
T 4ay9_X          160 WLNKNGIQEIHNSAFNG-TQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRAR  231 (350)
T ss_dssp             ECCSSCCCEECTTSSTT-EEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSCTTCCEEECT
T ss_pred             ccccccccCCChhhccc-cchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhhccchHhhhc
Confidence            99999999999888864 578899987 588999998999999999999999999999988777665554433

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.92  E-value=6.5e-25  Score=226.30  Aligned_cols=241  Identities=20%  Similarity=0.305  Sum_probs=181.7

Q ss_pred             CCCCCCCeeCC-CeEEcCCCCCCcCCCCCCccCcEEecCCCcceeecCCCccCCCCCCcEEeCCCCcceecCCCcCCCcc
Q psy15407         86 AACPSGCSCDG-TRVDCSQRGLKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGEN  164 (604)
Q Consensus        86 ~~CP~~C~C~~-~~l~cs~~~L~~iP~~l~~~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~l~  164 (604)
                      ..+|..|.|.+ .+.++++++|++||..++..+++|+|++|.|+.++.. .|.++++|++|+|++|+|+.+.+.+|.+++
T Consensus        22 ~~~~~~~~C~~~~~c~~~~~~l~~iP~~~~~~L~~L~l~~n~i~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~  100 (353)
T 2z80_A           22 SSNQASLSCDRNGICKGSSGSLNSIPSGLTEAVKSLDLSNNRITYISNS-DLQRCVNLQALVLTSNGINTIEEDSFSSLG  100 (353)
T ss_dssp             -----CCEECTTSEEECCSTTCSSCCTTCCTTCCEEECTTSCCCEECTT-TTTTCTTCCEEECTTSCCCEECTTTTTTCT
T ss_pred             CCCccCCCCCCCeEeeCCCCCcccccccccccCcEEECCCCcCcccCHH-HhccCCCCCEEECCCCccCccCHhhcCCCC
Confidence            34677777764 3579999999999999999999999999999999874 499999999999999999999999999999


Q ss_pred             cCCcCCCCCCCCC--------ccccccEEEccCCccccccc-------cccce---eee-eeccc----cCCccccceee
Q psy15407        165 DQGCLGDNYCPPK--------CTCTVRVLFYDGRAGECYIA-------VELFS---SRI-RVSYY----VGNYPVSTMYR  221 (604)
Q Consensus       165 ~L~~L~l~~~~~~--------~~~~l~~l~~~~~~~~~~~~-------~~~~~---~~~-~~~~~----~~~~~~~L~~L  221 (604)
                      +|+.|++++|.+.        ....++.+.+..+.......       .++..   ... .+...    ... ..+|++|
T Consensus       101 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~-l~~L~~L  179 (353)
T 2z80_A          101 SLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAG-LTFLEEL  179 (353)
T ss_dssp             TCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTT-CCEEEEE
T ss_pred             CCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccC-CCCCCEE
Confidence            9999999998643        34567778877664321111       00000   001 01111    112 2388999


Q ss_pred             cCCCCceeeccCCCCCCCCCCCeEEecCCcceeeec--------------------------------------------
Q psy15407        222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDR--------------------------------------------  257 (604)
Q Consensus       222 ~Ls~N~i~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~--------------------------------------------  257 (604)
                      +|++|+|+.+.+..|..+++|++|+|++|++..++.                                            
T Consensus       180 ~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~  259 (353)
T 2z80_A          180 EIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNV  259 (353)
T ss_dssp             EEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESC
T ss_pred             ECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccc
Confidence            999999999988888887777766666665443321                                            


Q ss_pred             -----------cccCCCCcccEEEccCCccccCCcccccCcccceeeeccCCCcccccC-CCcccccccccccc-CCccc
Q psy15407        258 -----------DALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIGGNPLYCDCG-LAWLSEWVKRDYVE-PGIAR  324 (604)
Q Consensus       258 -----------~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~Npl~CdC~-l~~l~~~~~~~~~~-~~~~~  324 (604)
                                 ..|..+++|+.|+|++|+|+.+|..+|..+++|++|+|++|||.|+|. +.|+..|++..... .....
T Consensus       260 ~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~~l~~l~~~~~~~~~~~~~~~~  339 (353)
T 2z80_A          260 KITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQGSAK  339 (353)
T ss_dssp             BCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHHHHHHHHHHHHHTTTTEESCCB
T ss_pred             cccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcCCCcHHHHHHHHhccccCCCCcc
Confidence                       124567899999999999999999989999999999999999999996 89999998765432 34578


Q ss_pred             cCCC
Q psy15407        325 CTEP  328 (604)
Q Consensus       325 C~~P  328 (604)
                      |..|
T Consensus       340 C~~p  343 (353)
T 2z80_A          340 CSGS  343 (353)
T ss_dssp             BTTT
T ss_pred             cCCC
Confidence            8887

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.91  E-value=1.8e-24  Score=199.85  Aligned_cols=164  Identities=34%  Similarity=0.722  Sum_probs=135.1

Q ss_pred             CCCCCeeCCCeEEcCCCCCCcCCCCCCccCcEEecCCCcceeecCCCccCCCCCCcEEeCCCCcceecCCCcCCCcccCC
Q psy15407         88 CPSGCSCDGTRVDCSQRGLKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQG  167 (604)
Q Consensus        88 CP~~C~C~~~~l~cs~~~L~~iP~~l~~~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~  167 (604)
                      ||..|+|.++.|+|++++|+.+|..++..+++|+|++|+|+.+++. +|..+++|++|+|++|+|+.+++.+        
T Consensus         1 Cp~~C~C~~~~l~~~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~--------   71 (177)
T 2o6r_A            1 CPSRCSCSGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHG-VFDKLTQLTKLSLSQNQIQSLPDGV--------   71 (177)
T ss_dssp             CCTTCEEETTEEECCSSCCSSCCTTCCTTCSEEECCSSCCCCCCTT-TTTTCTTCSEEECCSSCCCCCCTTT--------
T ss_pred             CcCCCEeCCCEEEecCCCCccCCCCCCCCCcEEEeCCCcccEeCHH-HhcCcccccEEECCCCcceEeChhH--------
Confidence            8999999999999999999999998888888888888888887663 4777777777777777776655443        


Q ss_pred             cCCCCCCCCCccccccEEEccCCccccccccccceeeeeeccccCCccccceeecCCCCceeeccCCCCCCCCCCCeEEe
Q psy15407        168 CLGDNYCPPKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLIL  247 (604)
Q Consensus       168 ~L~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L  247 (604)
                                                                                          |..+++|++|+|
T Consensus        72 --------------------------------------------------------------------~~~l~~L~~L~l   83 (177)
T 2o6r_A           72 --------------------------------------------------------------------FDKLTKLTILYL   83 (177)
T ss_dssp             --------------------------------------------------------------------TTTCTTCCEEEC
T ss_pred             --------------------------------------------------------------------ccCCCccCEEEC
Confidence                                                                                445667777788


Q ss_pred             cCCcceeeeccccCCCCcccEEEccCCccccCCcccccCcccceeeeccCCCcccccC-CCccccccccccc-cCCcccc
Q psy15407        248 SYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIGGNPLYCDCG-LAWLSEWVKRDYV-EPGIARC  325 (604)
Q Consensus       248 s~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~Npl~CdC~-l~~l~~~~~~~~~-~~~~~~C  325 (604)
                      ++|+|+.+++..|..+++|++|+|++|+|+.+++..|..+++|++|+|++|+|.|+|. +.||..|+..... ......|
T Consensus        84 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~l~~l~~~~~~~~~~~~~~~~C  163 (177)
T 2o6r_A           84 HENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQGSAKC  163 (177)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHHHHHHHHHHHHHTGGGEESCCBB
T ss_pred             CCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCccHHHHHHHHhhCccccccCcEe
Confidence            8888888877778888999999999999999999888999999999999999999998 8899999875443 3355678


Q ss_pred             CCC
Q psy15407        326 TEP  328 (604)
Q Consensus       326 ~~P  328 (604)
                      ..+
T Consensus       164 ~~~  166 (177)
T 2o6r_A          164 SGS  166 (177)
T ss_dssp             TTT
T ss_pred             CCC
Confidence            764

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.91  E-value=6e-24  Score=216.97  Aligned_cols=213  Identities=26%  Similarity=0.310  Sum_probs=142.5

Q ss_pred             CCCCCCCCCeeCCCeEEcCCCCCCcCCCCCCccCcEEecCCCcceeecCCCccCCCCCCcEEeCCCCcceecCCCcCCCc
Q psy15407         84 IDAACPSGCSCDGTRVDCSQRGLKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGE  163 (604)
Q Consensus        84 ~~~~CP~~C~C~~~~l~cs~~~L~~iP~~l~~~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~l  163 (604)
                      +...||..|.|..+.|+|++++|+.+|..++..++.|+|++|+|+.+++. .|.++++|++|+|++|+|+.+.+.+|..+
T Consensus        21 ~~~~cp~~c~c~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l   99 (330)
T 1xku_A           21 MGPVCPFRCQCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDG-DFKNLKNLHTLILINNKISKISPGAFAPL   99 (330)
T ss_dssp             -CCCCCTTCEEETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTT-TTTTCTTCCEEECCSSCCCCBCTTTTTTC
T ss_pred             ccCCCCCCCcCCCeEEEecCCCccccCccCCCCCeEEECCCCcCCEeChh-hhccCCCCCEEECCCCcCCeeCHHHhcCC
Confidence            45679999999999999999999999999999999999999999999874 49999999999999999999999999999


Q ss_pred             ccCCcCCCCCCCCCcc-----ccccEEEccCCccccc---------------cccccceeeeeeccccCCccccceeecC
Q psy15407        164 NDQGCLGDNYCPPKCT-----CTVRVLFYDGRAGECY---------------IAVELFSSRIRVSYYVGNYPVSTMYRDL  223 (604)
Q Consensus       164 ~~L~~L~l~~~~~~~~-----~~l~~l~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~L~~L~L  223 (604)
                      ++|+.|++++|.+..+     ..++.+.+..+.....               +..+.+............. .+|++|+|
T Consensus       100 ~~L~~L~Ls~n~l~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~~L~~L~l  178 (330)
T 1xku_A          100 VKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGM-KKLSYIRI  178 (330)
T ss_dssp             TTCCEEECCSSCCSBCCSSCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGC-TTCCEEEC
T ss_pred             CCCCEEECCCCcCCccChhhcccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCC-CCcCEEEC
Confidence            9999999999865433     3566666654432211               1111100000000000111 25555566


Q ss_pred             CCCceeeccCCCCCCCCCCCeEEecCCcceeeeccccCCCCcccEEEccCCccccCCcccccCcccceeeeccCCCcc
Q psy15407        224 SNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIGGNPLY  301 (604)
Q Consensus       224 s~N~i~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~Npl~  301 (604)
                      ++|+|+.++...+   ++|++|+|++|+|+.+.+..|..+++|+.|+|++|+|+.+++..|..+++|+.|+|++|.+.
T Consensus       179 ~~n~l~~l~~~~~---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~  253 (330)
T 1xku_A          179 ADTNITTIPQGLP---PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV  253 (330)
T ss_dssp             CSSCCCSCCSSCC---TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS
T ss_pred             CCCccccCCcccc---ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc
Confidence            6665555554332   45555555555555555555555555555555555555555555555555555555555554

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.91  E-value=1.8e-24  Score=239.53  Aligned_cols=233  Identities=21%  Similarity=0.232  Sum_probs=177.5

Q ss_pred             CCeEEcCCCCCCcC---CCCC--CccCcEEecCCCcceeecCCCccCCCCCCcEEeCCCCcceecCC-CcCCCcccCCcC
Q psy15407         96 GTRVDCSQRGLKEI---PKDI--PLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIED-NAFEGENDQGCL  169 (604)
Q Consensus        96 ~~~l~cs~~~L~~i---P~~l--~~~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i~~-~~f~~l~~L~~L  169 (604)
                      -+.|++++|.|+.+   |..+  ...+++|+|++|.|+.++..  |..+++|++|+|++|+|+.+.+ ..|..+++|+.|
T Consensus       352 L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L  429 (606)
T 3vq2_A          352 LSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSAN--FMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYL  429 (606)
T ss_dssp             CCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECCC--CTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEE
T ss_pred             CCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccchhh--ccCCCCCCeeECCCCccCCccChhhhhccccCCEE
Confidence            37899999999876   4433  46789999999999999843  9999999999999999999887 789999999999


Q ss_pred             CCCCCCCC--------ccccccEEEccCCccccccccccceeeeeeccccCCccccceeecCCCCceeeccCCCCCCCCC
Q psy15407        170 GDNYCPPK--------CTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSK  241 (604)
Q Consensus       170 ~l~~~~~~--------~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~i~~l~~~~f~~l~~  241 (604)
                      ++++|...        ....++.+.+..+.....          .+....... .+|++|+|++|+|+.+++..|..+++
T Consensus       430 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~----------~~~~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~~  498 (606)
T 3vq2_A          430 DISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDN----------TLSNVFANT-TNLTFLDLSKCQLEQISWGVFDTLHR  498 (606)
T ss_dssp             ECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGG----------EECSCCTTC-TTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred             ECcCCCCCccchhhhcCCCCCCEEECCCCcCCCc----------chHHhhccC-CCCCEEECCCCcCCccChhhhccccc
Confidence            99998633        233444444444322110          011111222 38999999999999999999999999


Q ss_pred             CCeEEecCCcceeeeccccCCCCcccEEEccCCccccCCcccccCcc-cceeeeccCCCcccccCCCccccccccccc--
Q psy15407        242 LSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLH-AITHLAIGGNPLYCDCGLAWLSEWVKRDYV--  318 (604)
Q Consensus       242 L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~-~L~~L~L~~Npl~CdC~l~~l~~~~~~~~~--  318 (604)
                      |++|+|++|+|+.+.+..|..+++|++|+|++|+|+.+|.. |..++ +|+.|+|++|||.|+|.+.||.+|++....  
T Consensus       499 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~~-~~~l~~~L~~l~l~~N~~~c~c~~~~~~~~l~~~~~~~  577 (606)
T 3vq2_A          499 LQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGI-LQHFPKSLAFFNLTNNSVACICEHQKFLQWVKEQKQFL  577 (606)
T ss_dssp             CCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCCEESC-GGGSCTTCCEEECCSCCCCCSSTTHHHHTTTTTSSSSB
T ss_pred             CCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCcccCHh-HhhhcccCcEEEccCCCcccCCccHHHHHHHHcCcccc
Confidence            99999999999999999999999999999999999999987 77786 599999999999999999999999976432  


Q ss_pred             -cCCccccCCCCcccccccccCCCC
Q psy15407        319 -EPGIARCTEPASMRDKLLLTAPAS  342 (604)
Q Consensus       319 -~~~~~~C~~P~~l~g~~l~~~~~~  342 (604)
                       .....+|..|..++|+.+.++...
T Consensus       578 ~~~~~~~C~~p~~~~~~~l~~~~~~  602 (606)
T 3vq2_A          578 VNVEQMTCATPVEMNTSLVLDFNNS  602 (606)
T ss_dssp             SSGGGCCCC----------------
T ss_pred             cCCccceeCCChHhCCCEeeecccc
Confidence             345689999999999999888654

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.91  E-value=9.3e-24  Score=215.72  Aligned_cols=215  Identities=26%  Similarity=0.333  Sum_probs=144.8

Q ss_pred             CCCCCCCCeeCCCeEEcCCCCCCcCCCCCCccCcEEecCCCcceeecCCCccCCCCCCcEEeCCCCcceecCCCcCCCcc
Q psy15407         85 DAACPSGCSCDGTRVDCSQRGLKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGEN  164 (604)
Q Consensus        85 ~~~CP~~C~C~~~~l~cs~~~L~~iP~~l~~~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~l~  164 (604)
                      ...||..|.|..+.|+|++++|++||..++..++.|+|++|.|+.+++. .|.++++|++|+|++|+|+.+.+.+|.+++
T Consensus        24 ~~~cp~~c~c~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~  102 (332)
T 2ft3_A           24 SAMCPFGCHCHLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKD-DFKGLQHLYALVLVNNKISKIHEKAFSPLR  102 (332)
T ss_dssp             -CCCCSSCEEETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCEECTT-TTTTCTTCCEEECCSSCCCEECGGGSTTCT
T ss_pred             cCCCCCCCcccCCEEECCCCCccccCCCCCCCCeEEECCCCcCCccCHh-HhhCCCCCcEEECCCCccCccCHhHhhCcC
Confidence            4569999999999999999999999999999999999999999999764 499999999999999999999999999999


Q ss_pred             cCCcCCCCCCCCCcc-----ccccEEEccCCcccccc---------------cccccee-------------------ee
Q psy15407        165 DQGCLGDNYCPPKCT-----CTVRVLFYDGRAGECYI---------------AVELFSS-------------------RI  205 (604)
Q Consensus       165 ~L~~L~l~~~~~~~~-----~~l~~l~~~~~~~~~~~---------------~~~~~~~-------------------~~  205 (604)
                      +|+.|++++|.+..+     ..++.+.+..+......               ..+.+..                   ..
T Consensus       103 ~L~~L~L~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n  182 (332)
T 2ft3_A          103 KLQKLYISKNHLVEIPPNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEA  182 (332)
T ss_dssp             TCCEEECCSSCCCSCCSSCCTTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSS
T ss_pred             CCCEEECCCCcCCccCccccccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCC
Confidence            999999999865433     35666666544322111               0010000                   00


Q ss_pred             eeccccCCccccceeecCCCCceeeccCCCCCCCCCCCeEEecCCcceeeeccccCCCCcccEEEccCCccccCCccccc
Q psy15407        206 RVSYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFA  285 (604)
Q Consensus       206 ~~~~~~~~~~~~L~~L~Ls~N~i~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~  285 (604)
                      .+..++.....+|++|+|++|+|+.+++..|..+++|++|+|++|+|+.+++.+|..+++|+.|+|++|+|+.+|.. |.
T Consensus       183 ~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~-l~  261 (332)
T 2ft3_A          183 KLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAG-LP  261 (332)
T ss_dssp             BCSSCCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCCTT-GG
T ss_pred             CCCccCccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecChh-hh
Confidence            00011111123455555555555555555555566666666666666665555555566666666666666655543 45


Q ss_pred             CcccceeeeccCCCcc
Q psy15407        286 DLHAITHLAIGGNPLY  301 (604)
Q Consensus       286 ~l~~L~~L~L~~Npl~  301 (604)
                      .+++|+.|+|++|++.
T Consensus       262 ~l~~L~~L~l~~N~l~  277 (332)
T 2ft3_A          262 DLKLLQVVYLHTNNIT  277 (332)
T ss_dssp             GCTTCCEEECCSSCCC
T ss_pred             cCccCCEEECCCCCCC
Confidence            5556666666666554

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.91  E-value=5.4e-24  Score=235.74  Aligned_cols=242  Identities=20%  Similarity=0.251  Sum_probs=178.3

Q ss_pred             CeEEcCCCCCC-cCCCC-C--CccCcEEecCCCcceeec--CCCccCCCCCCcEEeCCCCcceecCCCcCCCcccCCcCC
Q psy15407         97 TRVDCSQRGLK-EIPKD-I--PLYTTELILNDNEIGKIK--SDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLG  170 (604)
Q Consensus        97 ~~l~cs~~~L~-~iP~~-l--~~~~~~L~L~~N~i~~i~--~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~  170 (604)
                      +.|+++++.+. .+|.. +  ...+++|+|++|.|+.+.  +. .|..+++|++|+|++|+|+.+.+.+|..+++|+.|+
T Consensus       328 ~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  406 (606)
T 3t6q_A          328 THLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNL-QLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLD  406 (606)
T ss_dssp             SEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTT-TTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEE
T ss_pred             CEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcch-hcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEE
Confidence            44555555544 44443 2  244577777777777664  32 377777888888888887777777777778888887


Q ss_pred             CCCCC---------CCccccccEEEccCCcccccc---------------ccccceee-eeeccccCCccccceeecCCC
Q psy15407        171 DNYCP---------PKCTCTVRVLFYDGRAGECYI---------------AVELFSSR-IRVSYYVGNYPVSTMYRDLSN  225 (604)
Q Consensus       171 l~~~~---------~~~~~~l~~l~~~~~~~~~~~---------------~~~~~~~~-~~~~~~~~~~~~~L~~L~Ls~  225 (604)
                      +++|.         +.....++.+.+..+......               ..+.+... .......... .+|++|+|++
T Consensus       407 l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l-~~L~~L~Ls~  485 (606)
T 3t6q_A          407 LAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTL-GRLEILVLSF  485 (606)
T ss_dssp             CTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGC-TTCCEEECTT
T ss_pred             CCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccC-CCccEEECCC
Confidence            77763         223455666666654322111               11111100 0000111122 3899999999


Q ss_pred             CceeeccCCCCCCCCCCCeEEecCCcceeeeccccCCCCcccEEEccCCccccCCcccccCcccceeeeccCCCcccccC
Q psy15407        226 NQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIGGNPLYCDCG  305 (604)
Q Consensus       226 N~i~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~Npl~CdC~  305 (604)
                      |+|+.+++..|..+++|++|+|++|+|+.+.+..|..+++| .|+|++|+|+.+++..|..+++|+.|+|++|||.|+|.
T Consensus       486 n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  564 (606)
T 3t6q_A          486 CDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCS  564 (606)
T ss_dssp             SCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGG
T ss_pred             CccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCC
Confidence            99999999999999999999999999999999999999999 99999999999999999999999999999999999999


Q ss_pred             CCcccccccccc---ccCCccccCCCCcccccccccCCC
Q psy15407        306 LAWLSEWVKRDY---VEPGIARCTEPASMRDKLLLTAPA  341 (604)
Q Consensus       306 l~~l~~~~~~~~---~~~~~~~C~~P~~l~g~~l~~~~~  341 (604)
                      +.||..|++...   ......+|..|+.++|+.+.+++.
T Consensus       565 ~~~~~~w~~~~~~~~~~~~~~~C~~p~~~~g~~l~~~~~  603 (606)
T 3t6q_A          565 NIYFLEWYKENMQKLEDTEDTLCENPPLLRGVRLSDVTL  603 (606)
T ss_dssp             GHHHHHHHHHCGGGEECGGGCBEEESGGGTTCBGGGCCC
T ss_pred             cHHHHHHHHhCcccccCCCCCeeCCchHhCCCeeeeeec
Confidence            999999997542   234567899999999999988864

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.91  E-value=2.7e-24  Score=208.91  Aligned_cols=205  Identities=19%  Similarity=0.235  Sum_probs=161.9

Q ss_pred             CCCCCCCeeCC-C--eEEcCCCCCCcCCCCCCccCcEEecCCCcceeecCCCccCCCCCCcEEeCCCCc-ceecCCCcCC
Q psy15407         86 AACPSGCSCDG-T--RVDCSQRGLKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQ-VTGIEDNAFE  161 (604)
Q Consensus        86 ~~CP~~C~C~~-~--~l~cs~~~L~~iP~~l~~~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~-i~~i~~~~f~  161 (604)
                      +.||..|.|.. +  .|+|.+  |++||. ++..+++|+|++|+|+.|++. .|.++++|++|+|++|+ |+.|++.+|.
T Consensus         2 ~~cp~~C~C~~~~~~~v~c~~--l~~ip~-~~~~l~~L~l~~n~l~~i~~~-~~~~l~~L~~L~l~~n~~l~~i~~~~f~   77 (239)
T 2xwt_C            2 GCSSPPCECHQEEDFRVTCKD--IQRIPS-LPPSTQTLKLIETHLRTIPSH-AFSNLPNISRIYVSIDVTLQQLESHSFY   77 (239)
T ss_dssp             -CCSSSCSEEECSTTEEEECS--CSSCCC-CCTTCCEEEEESCCCSEECTT-TTTTCTTCCEEEEECCSSCCEECTTTEE
T ss_pred             CCCCCCCeeCCCCcceeEccC--ccccCC-CCCcccEEEEeCCcceEECHH-HccCCCCCcEEeCCCCCCcceeCHhHcC
Confidence            46999999965 4  466876  999999 999999999999999999874 49999999999999997 9999999999


Q ss_pred             CcccCCcCCCCC-CCCCccccccEEEccCCccccccccccceeeeeeccccCCccccce---eecCCCC-ceeeccCCCC
Q psy15407        162 GENDQGCLGDNY-CPPKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTM---YRDLSNN-QIGFLSNFTF  236 (604)
Q Consensus       162 ~l~~L~~L~l~~-~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~---~L~Ls~N-~i~~l~~~~f  236 (604)
                      ++++|+.|++++ |.+..+.... +.-...+..+.+..+.+.....+    ... .+|+   +|+|++| +|+.+++..|
T Consensus        78 ~l~~L~~L~l~~~n~l~~i~~~~-f~~l~~L~~L~l~~n~l~~lp~~----~~l-~~L~~L~~L~l~~N~~l~~i~~~~~  151 (239)
T 2xwt_C           78 NLSKVTHIEIRNTRNLTYIDPDA-LKELPLLKFLGIFNTGLKMFPDL----TKV-YSTDIFFILEITDNPYMTSIPVNAF  151 (239)
T ss_dssp             SCTTCCEEEEEEETTCCEECTTS-EECCTTCCEEEEEEECCCSCCCC----TTC-CBCCSEEEEEEESCTTCCEECTTTT
T ss_pred             CCcCCcEEECCCCCCeeEcCHHH-hCCCCCCCEEeCCCCCCcccccc----ccc-cccccccEEECCCCcchhhcCcccc
Confidence            999999999998 7654332111 11112233333333322221111    111 2455   9999999 9999999899


Q ss_pred             CCCCCCC-eEEecCCcceeeeccccCCCCcccEEEccCCc-cccCCcccccCc-ccceeeeccCCCcc
Q psy15407        237 SPLSKLS-QLILSYNKLQCIDRDALAGLKSLRIISLHGND-ISMIPEGAFADL-HAITHLAIGGNPLY  301 (604)
Q Consensus       237 ~~l~~L~-~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~-l~~i~~~~f~~l-~~L~~L~L~~Npl~  301 (604)
                      ..+++|+ +|+|++|+|+.+++.+|.. ++|+.|+|++|+ |+.+++..|..+ ++|+.|+|++|++.
T Consensus       152 ~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~  218 (239)
T 2xwt_C          152 QGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT  218 (239)
T ss_dssp             TTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCC
T ss_pred             cchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccc
Confidence            9999999 9999999999998888887 899999999995 999998889999 99999999999886

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.89  E-value=2.2e-23  Score=190.99  Aligned_cols=153  Identities=37%  Similarity=0.713  Sum_probs=106.4

Q ss_pred             CCCCCCeeCCCeEEcCCCCCCcCCCCCCccCcEEecCCCcceeecCCCccCCCCCCcEEeCCCCcceecCCCcCCCcccC
Q psy15407         87 ACPSGCSCDGTRVDCSQRGLKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQ  166 (604)
Q Consensus        87 ~CP~~C~C~~~~l~cs~~~L~~iP~~l~~~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L  166 (604)
                      .||..|+|.+++|+|++++|++||..++..+++|+|++|+|+.+++. .|.+|                           
T Consensus         2 ~CP~~C~C~~~~l~~s~n~l~~ip~~~~~~l~~L~L~~N~i~~~~~~-~~~~l---------------------------   53 (170)
T 3g39_A            2 ACPSQCSCSGTTVDCSGKSLASVPTGIPTTTQVLYLYDNQITKLEPG-VFDRL---------------------------   53 (170)
T ss_dssp             CCC-CCEEETTEEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTT-TTTTC---------------------------
T ss_pred             cCcCcCCcCCCEEEeCCCCcCccCccCCCCCcEEEcCCCcCCccChh-hhcCc---------------------------
Confidence            59999999999999999999999976655555555555555444332 13333                           


Q ss_pred             CcCCCCCCCCCccccccEEEccCCccccccccccceeeeeeccccCCccccceeecCCCCceeeccCCCCCCCCCCCeEE
Q psy15407        167 GCLGDNYCPPKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLI  246 (604)
Q Consensus       167 ~~L~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~i~~l~~~~f~~l~~L~~L~  246 (604)
                                                                                               ++|++|+
T Consensus        54 -------------------------------------------------------------------------~~L~~L~   60 (170)
T 3g39_A           54 -------------------------------------------------------------------------TQLTRLD   60 (170)
T ss_dssp             -------------------------------------------------------------------------TTCSEEE
T ss_pred             -------------------------------------------------------------------------ccCCEEE
Confidence                                                                                     3444455


Q ss_pred             ecCCcceeeeccccCCCCcccEEEccCCccccCCcccccCcccceeeeccCCCcccccC-CCccccccccccc-------
Q psy15407        247 LSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIGGNPLYCDCG-LAWLSEWVKRDYV-------  318 (604)
Q Consensus       247 Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~Npl~CdC~-l~~l~~~~~~~~~-------  318 (604)
                      |++|+|+.+++..|..+++|++|+|++|+|+.+++..|..+++|+.|+|++|||.|+|. +.||..|++....       
T Consensus        61 Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~~l~~l~~~l~~~~~~~~~~~~  140 (170)
T 3g39_A           61 LDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACSDILYLSRWISQHPGLVFGYLN  140 (170)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTTBGGGHHHHHHHHHCGGGEECSSS
T ss_pred             CCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCCchhHHHHHHHHHhCcceeecccc
Confidence            55555555555556666777777788888888888778888999999999999999996 9999999875432       


Q ss_pred             -cCCccccCCCCcccccccccCCCCce
Q psy15407        319 -EPGIARCTEPASMRDKLLLTAPASSF  344 (604)
Q Consensus       319 -~~~~~~C~~P~~l~g~~l~~~~~~~~  344 (604)
                       .....+|..|    |+.+.++...++
T Consensus       141 ~~~~~~~C~~~----~~~~~~~~~~~~  163 (170)
T 3g39_A          141 LDPDSARCSGT----NTPVRAVTEAST  163 (170)
T ss_dssp             BCGGGSBBCC-----CCBGGGCCSTTC
T ss_pred             CCcccceeCCC----Cccchhcccccc
Confidence             3345678776    555666554443

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.88  E-value=9.2e-23  Score=226.77  Aligned_cols=186  Identities=23%  Similarity=0.300  Sum_probs=155.5

Q ss_pred             CCCCCee--CCCeEEcCCCCCCcCCCCCCccCcEEecCCCcceeecCCCccCCCCCCcEEeCCCCcceecCCCcCCCccc
Q psy15407         88 CPSGCSC--DGTRVDCSQRGLKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGEND  165 (604)
Q Consensus        88 CP~~C~C--~~~~l~cs~~~L~~iP~~l~~~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~  165 (604)
                      ++..|.|  ...+++|++.+|++||.++|..+++|+|++|+|+.|++. .|.+|++|++|+|++|+|+.|++++|.+|++
T Consensus        23 ~~~~c~~~~~~~~~~c~~~~l~~vP~~lp~~~~~LdLs~N~i~~l~~~-~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~  101 (635)
T 4g8a_A           23 SWEPCVEVVPNITYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSY-SFFSFPELQVLDLSRCEIQTIEDGAYQSLSH  101 (635)
T ss_dssp             --CCSEEEETTTEEECTTSCCSSCCSSSCTTCCEEECTTSCCCEECTT-TTTTCTTCCEEECTTCCCCEECTTTTTTCTT
T ss_pred             CCCCccccCCCCEEECCCCCcCccCCCCCcCCCEEEeeCCCCCCCCHH-HHhCCCCCCEEECCCCcCCCcChhHhcCCCC
Confidence            3456766  467899999999999999999999999999999999874 4999999999999999999999999999999


Q ss_pred             CCcCCCCCCCCCccccccEEEccCCccccccccccceeeeeeccccCCccccceeecCCCCceeeccCCCCCCCCCCCeE
Q psy15407        166 QGCLGDNYCPPKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQL  245 (604)
Q Consensus       166 L~~L~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~i~~l~~~~f~~l~~L~~L  245 (604)
                      |++|+|++|.+..+..                          ..| .. ..+|++|+|++|+|+.+++..|.++++|++|
T Consensus       102 L~~L~Ls~N~l~~l~~--------------------------~~f-~~-L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L  153 (635)
T 4g8a_A          102 LSTLILTGNPIQSLAL--------------------------GAF-SG-LSSLQKLVAVETNLASLENFPIGHLKTLKEL  153 (635)
T ss_dssp             CCEEECTTCCCCEECG--------------------------GGG-TT-CTTCCEEECTTSCCCCSTTCCCTTCTTCCEE
T ss_pred             CCEEEccCCcCCCCCH--------------------------HHh-cC-CCCCCEEECCCCcCCCCChhhhhcCcccCee
Confidence            9999999876432110                          001 11 1389999999999999999999999999999


Q ss_pred             EecCCcceeee-ccccCCCCcccEEEccCCccccCCcccccCcccce----eeeccCCCccc
Q psy15407        246 ILSYNKLQCID-RDALAGLKSLRIISLHGNDISMIPEGAFADLHAIT----HLAIGGNPLYC  302 (604)
Q Consensus       246 ~Ls~N~l~~i~-~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~----~L~L~~Npl~C  302 (604)
                      +|++|+|+.+. +..|..+++|++|+|++|+|+.+++..|..+.++.    .++++.|++.-
T Consensus       154 ~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~  215 (635)
T 4g8a_A          154 NVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF  215 (635)
T ss_dssp             ECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCE
T ss_pred             ccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCcccc
Confidence            99999998864 56778899999999999999999888887766543    57788888763

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.88  E-value=1e-22  Score=223.25  Aligned_cols=89  Identities=26%  Similarity=0.310  Sum_probs=69.1

Q ss_pred             CCCCCCCeeCC-CeEEcCCCCCCcCCCCCCccCcEEecCCCcceeecCCCccCCCCCCcEEeCCCCcceecCCCcCCCcc
Q psy15407         86 AACPSGCSCDG-TRVDCSQRGLKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGEN  164 (604)
Q Consensus        86 ~~CP~~C~C~~-~~l~cs~~~L~~iP~~l~~~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~l~  164 (604)
                      ..++..|.|.. +.|+|++++|+.||..++..+++|+|++|.|+.+++. .|.++++|++|+|++|+|+.+.+.+|.+++
T Consensus        22 ~~~~~~~~~~~~~~l~ls~~~L~~ip~~~~~~L~~L~Ls~N~i~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~  100 (562)
T 3a79_B           22 VGSMTPFSNELESMVDYSNRNLTHVPKDLPPRTKALSLSQNSISELRMP-DISFLSELRVLRLSHNRIRSLDFHVFLFNQ  100 (562)
T ss_dssp             -----------CCEEECTTSCCCSCCTTSCTTCCEEECCSSCCCCCCGG-GTTTCTTCCEEECCSCCCCEECTTTTTTCT
T ss_pred             hccccccccCCCcEEEcCCCCCccCCCCCCCCcCEEECCCCCccccChh-hhccCCCccEEECCCCCCCcCCHHHhCCCC
Confidence            34566677753 6899999999999999999999999999999999763 489999999999999999999988998888


Q ss_pred             cCCcCCCCCCC
Q psy15407        165 DQGCLGDNYCP  175 (604)
Q Consensus       165 ~L~~L~l~~~~  175 (604)
                      +|++|+|++|.
T Consensus       101 ~L~~L~Ls~N~  111 (562)
T 3a79_B          101 DLEYLDVSHNR  111 (562)
T ss_dssp             TCCEEECTTSC
T ss_pred             CCCEEECCCCc
Confidence            88888777663

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.88  E-value=6.7e-23  Score=235.23  Aligned_cols=124  Identities=24%  Similarity=0.419  Sum_probs=93.4

Q ss_pred             cceeecCCCCceeeccCCCCCCCCCCCeEEecCCcceeeeccccCCCCcccEEEccCCccccCCcccccCcccceeeecc
Q psy15407        217 STMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIG  296 (604)
Q Consensus       217 ~L~~L~Ls~N~i~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~  296 (604)
                      +|+.|+|++|+|+.+++..|..+++|+.|+|++|+|+.+++..|.  ++|+.|+|++|+|+.+++..|   .+|+.|+|+
T Consensus       481 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~---~~L~~l~l~  555 (844)
T 3j0a_A          481 HLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVF---VSLSVLDIT  555 (844)
T ss_dssp             CEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCC---SSCCEEEEE
T ss_pred             cccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhHh---CCcCEEEec
Confidence            566777777777777777777777777777777777777666665  677777777777777776554   478899999


Q ss_pred             CCCcccccCCCccccccccccc----cCCccccCCCCcccccccccCCCCceeec
Q psy15407        297 GNPLYCDCGLAWLSEWVKRDYV----EPGIARCTEPASMRDKLLLTAPASSFQCK  347 (604)
Q Consensus       297 ~Npl~CdC~l~~l~~~~~~~~~----~~~~~~C~~P~~l~g~~l~~~~~~~~~C~  347 (604)
                      +|||.|+|.+.||..|++....    .+....|..|..++|+.+.++...  .|.
T Consensus       556 ~Np~~C~c~~~~f~~~~~~~~~~~~~~~~~~~C~~p~~~~g~~l~~~~~~--~C~  608 (844)
T 3j0a_A          556 HNKFICECELSTFINWLNHTNVTIAGPPADIYCVYPDSFSGVSLFSLSTE--GCD  608 (844)
T ss_dssp             EECCCCSSSCCSHHHHHHHTTTTTCCCGGGCCCSSCSSSCSCCTTTCCCC--CC-
T ss_pred             CCCcccccccHHHHHHHHhcCcccccccccCccCCchhhCCCccccCccc--cCC
Confidence            9999999999999999875433    234568999999999988877553  454

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.88  E-value=1.6e-22  Score=185.85  Aligned_cols=131  Identities=37%  Similarity=0.728  Sum_probs=95.5

Q ss_pred             CCCCCCCCeeCCCeEEcCCCCCCcCCCCCCccCcEEecCCCcceeecCCCccCCCCCCcEEeCCCCcceecCCCcCCCcc
Q psy15407         85 DAACPSGCSCDGTRVDCSQRGLKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGEN  164 (604)
Q Consensus        85 ~~~CP~~C~C~~~~l~cs~~~L~~iP~~l~~~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~l~  164 (604)
                      ...||..|+|..+.|+|++++|++||..++..+++|+|++|+|+.+++. .|.++                         
T Consensus         3 ~~~CP~~C~C~~~~l~~~~n~l~~iP~~~~~~L~~L~Ls~N~l~~~~~~-~~~~l-------------------------   56 (174)
T 2r9u_A            3 SAGCPSQCSCDQTLVNCQNIRLASVPAGIPTDKQRLWLNNNQITKLEPG-VFDHL-------------------------   56 (174)
T ss_dssp             CCSSCTTSEECSSEEECCSSCCSSCCSCCCTTCSEEECCSSCCCCCCTT-TTTTC-------------------------
T ss_pred             CCCCCCCCEECCcEEEeCCCCCCccCCCcCCCCcEEEeCCCCccccCHH-HhcCC-------------------------
Confidence            4579999999999999999999999976665555555555555444332 13333                         


Q ss_pred             cCCcCCCCCCCCCccccccEEEccCCccccccccccceeeeeeccccCCccccceeecCCCCceeeccCCCCCCCCCCCe
Q psy15407        165 DQGCLGDNYCPPKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQ  244 (604)
Q Consensus       165 ~L~~L~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~i~~l~~~~f~~l~~L~~  244 (604)
                                                                                                 ++|++
T Consensus        57 ---------------------------------------------------------------------------~~L~~   61 (174)
T 2r9u_A           57 ---------------------------------------------------------------------------VNLQQ   61 (174)
T ss_dssp             ---------------------------------------------------------------------------TTCCE
T ss_pred             ---------------------------------------------------------------------------cCCCE
Confidence                                                                                       34444


Q ss_pred             EEecCCcceeeeccccCCCCcccEEEccCCccccCCcccccCcccceeeeccCCCcccccC-CCccccccccc
Q psy15407        245 LILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIGGNPLYCDCG-LAWLSEWVKRD  316 (604)
Q Consensus       245 L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~Npl~CdC~-l~~l~~~~~~~  316 (604)
                      |+|++|+|+.+++..|..+++|++|+|++|+|+.+++..|..+++|+.|+|++|+|.|+|. +.||..|++..
T Consensus        62 L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~~~~~l~~~~~~~  134 (174)
T 2r9u_A           62 LYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDCECRDIMYLRNWVADH  134 (174)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCTTBGGGHHHHHHHHHC
T ss_pred             EECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEeCCCCcccccccHHHHHHHHHhc
Confidence            4444445555555556666777777777888888888778888999999999999999996 99999998654

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.87  E-value=5e-22  Score=196.79  Aligned_cols=187  Identities=24%  Similarity=0.370  Sum_probs=162.1

Q ss_pred             CeEEcCCCCCCcCCCC-CCccCcEEecCCCcceeecCCCccCCCCCCcEEeCCCCcceecCCCcCCCcccCCcCCCCCCC
Q psy15407         97 TRVDCSQRGLKEIPKD-IPLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDNYCP  175 (604)
Q Consensus        97 ~~l~cs~~~L~~iP~~-l~~~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~l~~~~  175 (604)
                      +.|+++++.++.++.- ....+++|+|++|.|+.++.   |..+++|++|+|++|+|+.+++..|..+++|+.|++++|.
T Consensus        44 ~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~~~---l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~  120 (272)
T 3rfs_A           44 DQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDISA---LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQ  120 (272)
T ss_dssp             CEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCCCGG---GTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred             eeeeeCCCCcccccccccCCCCcEEECCCCCCCCchh---hcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCc
Confidence            6899999999988752 25678999999999998852   8999999999999999999999999999999999999876


Q ss_pred             CCccccccEEEccCCccccccccccceeeeeeccccCCccccceeecCCCCceeeccCCCCCCCCCCCeEEecCCcceee
Q psy15407        176 PKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCI  255 (604)
Q Consensus       176 ~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~i~~l~~~~f~~l~~L~~L~Ls~N~l~~i  255 (604)
                      +..+..                           ..... ..+|++|+|++|+|+.+++..|..+++|++|+|++|+|+.+
T Consensus       121 l~~~~~---------------------------~~~~~-l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  172 (272)
T 3rfs_A          121 LQSLPD---------------------------GVFDK-LTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSL  172 (272)
T ss_dssp             CCCCCT---------------------------TTTTT-CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred             CCccCH---------------------------HHhcc-CCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCcc
Confidence            432110                           00111 13899999999999999999999999999999999999999


Q ss_pred             eccccCCCCcccEEEccCCccccCCcccccCcccceeeeccCCCcccccC-CCccccccc
Q psy15407        256 DRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIGGNPLYCDCG-LAWLSEWVK  314 (604)
Q Consensus       256 ~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~Npl~CdC~-l~~l~~~~~  314 (604)
                      ++..|..+++|++|+|++|+|+.+++..|..+++|+.|+|++|+|.|+|. +.++..|..
T Consensus       173 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~l~~l~~~~n  232 (272)
T 3rfs_A          173 PEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGIRYLSEWIN  232 (272)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTHHHHHHHH
T ss_pred             CHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccccCcHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999997 677766644

>4fbr_A Lectin, myxobacterial hemagglutinin; beta-barrel, HIV-inactivating, carbohydrate binding protein; 1.60A {Myxococcus xanthus} PDB: 4fbv_A*

Probab=99.87  E-value=2.9e-26  Score=217.66  Aligned_cols=201  Identities=15%  Similarity=0.136  Sum_probs=142.0

Q ss_pred             CCCCCCCeeecCCCCceeeeCCCCCcCCCCcccCCC------CCCCCCCCCCeeeeCCCCceEeeCCCCCcCCCCCcCCC
Q psy15407        364 SPCTNQGVCEPLPERQYQCRCTPGYHGQHCEFMIDA------CYGNPCRNSGTCKLLEEGRFNCECAPGYTGDRCEINID  437 (604)
Q Consensus       364 ~~C~~~g~C~~~~~~~~~C~C~~g~~G~~c~~~~~~------C~~~~C~~~~~C~~~~~~~~~C~C~~g~~g~~C~~~~~  437 (604)
                      .+|.++|+|++.. ++|+|.|+.||+|+.|+..+++      |...||.++++|               |.|..|+. .+
T Consensus        38 ~~c~ngG~C~~g~-~~y~C~Cp~Gf~G~~Ce~ni~ec~~~~~c~s~pC~nggtc---------------~~G~~c~~-~~  100 (267)
T 4fbr_A           38 IKSDDGGKTLKGT-MTYNGEGPIGFRGTLSSANNYTVENQWGGTSAPWQPGGVW---------------VLGARDKQ-NI  100 (267)
T ss_dssp             EECSSTTSEEEEE-EEETTSCCEEEEEEECSTTEEEEEEESSSTTSCEEEEEEE---------------ECCCCSSC-CE
T ss_pred             CCcCCCCeecCCC-CCeEEeCCCCcccccccccccccccccCcCCCcccCCCee---------------eccCcccc-cc
Confidence            3788999999876 6899999999999999999988      666666665554               45677874 46


Q ss_pred             cCCCCCCCCCcEEEeCCCCeEEecCCCCCCCCcccCCCcCCCCCCCCCCCCceeecCCCeEEecCCCCcCCcCcccCCCC
Q psy15407        438 DCLSHKCENNATCVDLIQAYECRCAPGFQGEFCQTKTPFCAGEYNPCRNGARCLDHFSHYTCECTPGFSGVNCTVNVDDC  517 (604)
Q Consensus       438 ~C~~~~C~~~~~C~~~~~~~~C~C~~g~~g~~C~~~~~~C~~~~~~C~~~~~C~~~~~~~~C~C~~g~~g~~c~~~~~~C  517 (604)
                      +|.+.||.++++|++...+|+|.|++||+|..|+.++++|...  .+...+.|.+        +..+|.|.+|+.+++ |
T Consensus       101 eC~s~pC~ngG~C~~~~~sy~C~C~~Gf~G~~Ce~~~d~C~n~--~~c~s~pC~n--------gg~c~~G~~c~~~i~-c  169 (267)
T 4fbr_A          101 VAVSIKSNDGGKTLTGTTTYNGEGPIGFKSEVTDGDTYSVENQ--WGGSAAPWHS--------GGVWVLGTRGKQNVI-N  169 (267)
T ss_dssp             EEEEEECSSTTSEEEEEEEETTSCCEEEEEEECCCCEEEEEEE--CSSTTSCCEE--------EEEEECCSSTTSCEE-E
T ss_pred             ccCCCCCCCCCEEecCCccEEeeCCCCccccCCCCCccccccc--CCcCCccccC--------Ccceecccccccccc-c
Confidence            8999999999999999999999999999999998888775421  2222223322        111234666665443 4


Q ss_pred             CCCCCCCCCEEeeCCCCeEeeeCCCCccCCCCcCccccc--CCCCCCC----------CC--------CCCCCCCc-eeC
Q psy15407        518 VNHMCQNGGTCVDGINDYTCKCEGDFVGKFCEIAPFVAM--MYPQTSP----------CQ--------HHDCKNGI-CFQ  576 (604)
Q Consensus       518 ~~~~C~~~~~C~~~~~~y~C~C~~G~~G~~C~~~~~~~~--~~~~~~~----------C~--------~~~C~~g~-C~~  576 (604)
                      ...+|.++|+|++..++|+|.|++||+|..|+.......  ..-...+          |.        ..+|.+++ |++
T Consensus       170 ~~~~c~ngg~C~dg~~~y~C~Cp~Gf~G~~c~~~i~ec~~~~~c~~~~c~~gG~~~~~C~~g~n~~~c~~~c~ngGtC~d  249 (267)
T 4fbr_A          170 VDAKSNDGGKTLSGTMTYNGEGPIGFRGTLTSPDTYTVENQWGGSTAPWNPGGFWMIGARNGQNVVALNVASSDGGKTLA  249 (267)
T ss_dssp             EEEECSSTTSEEEEEEEETTSCCEEEEEEEEETTEEEEEEECSCTTSCCEEEEEEECCCCTTCCEEEEEEECSSTTSEEE
T ss_pred             CCCCCCCCCEeeCCCCCeEEeCCCCccccccccccceeccCCCccCCcccCCCeEEEecCCCCccccCCcCCCCCCEeeC
Confidence            456788888888888888888888888888776533200  0000001          11        12355655 988


Q ss_pred             CCCCCCeeeecCCCCcCC
Q psy15407        577 PQGSNDYLCKCAPGYSGK  594 (604)
Q Consensus       577 ~~g~~~~~C~C~~G~~G~  594 (604)
                      ..  .+|+|.|++||+|+
T Consensus       250 g~--~sy~CeCp~GF~G~  265 (267)
T 4fbr_A          250 GT--MIYNGEGPIGFRAR  265 (267)
T ss_dssp             EE--EEETTSCCEEEEEE
T ss_pred             CC--cceeecCCCCcccc
Confidence            77  78999999999986

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.86  E-value=2e-21  Score=202.98  Aligned_cols=234  Identities=16%  Similarity=0.238  Sum_probs=154.1

Q ss_pred             CCeEEcCCCCCCcCCCCC---CccCcEEecCCCcceeecCCCccCCCCCCcEEeCCCCcceecCCCcCCCcccCCcCCCC
Q psy15407         96 GTRVDCSQRGLKEIPKDI---PLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDN  172 (604)
Q Consensus        96 ~~~l~cs~~~L~~iP~~l---~~~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~l~  172 (604)
                      -+.|++++|.|+.+|...   ...+++|+|++|.|+.++. .+|.++++|++|+|++|+|+.+.+.+|..+++|+.|+++
T Consensus        95 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~  173 (390)
T 3o6n_A           95 IQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPR-GIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLS  173 (390)
T ss_dssp             CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECC
T ss_pred             cCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCH-HHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECC
Confidence            367888888888876543   3567888888888888876 457888888888888888888888888888888888888


Q ss_pred             CCCCCc-----cccccEEEccCCcc----------ccccccccceee---------------eeec--cccCCcccccee
Q psy15407        173 YCPPKC-----TCTVRVLFYDGRAG----------ECYIAVELFSSR---------------IRVS--YYVGNYPVSTMY  220 (604)
Q Consensus       173 ~~~~~~-----~~~l~~l~~~~~~~----------~~~~~~~~~~~~---------------~~~~--~~~~~~~~~L~~  220 (604)
                      +|.+..     +..+..+.+..+..          .+.+..+.+...               ..+.  ...... .+|++
T Consensus       174 ~n~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~l~~l-~~L~~  252 (390)
T 3o6n_A          174 SNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNY-PGLVE  252 (390)
T ss_dssp             SSCCSBCCGGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCCGGGGGC-TTCSE
T ss_pred             CCcCCccccccccccceeecccccccccCCCCcceEEECCCCeeeeccccccccccEEECCCCCCcccHHHcCC-CCccE
Confidence            876442     23333333332211          111111111000               0000  011112 36778


Q ss_pred             ecCCCCceeeccCCCCCCCCCCCeEEecCCcceeeeccccCCCCcccEEEccCCccccCCccc-----------------
Q psy15407        221 RDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGA-----------------  283 (604)
Q Consensus       221 L~Ls~N~i~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~-----------------  283 (604)
                      |+|++|.|+.+.+..|..+++|++|+|++|+|+.++. .+..+++|++|+|++|+|+.+++..                 
T Consensus       253 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~N~i~  331 (390)
T 3o6n_A          253 VDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNL-YGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIV  331 (390)
T ss_dssp             EECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEEEC-SSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCC
T ss_pred             EECCCCcCCCcChhHccccccCCEEECCCCcCcccCc-ccCCCCCCCEEECCCCcceecCccccccCcCCEEECCCCccc
Confidence            8888888888777778788888888888888877743 4456677777777777776665431                 


Q ss_pred             ---ccCcccceeeeccCCCcccccCCCccccccccccccCCccccCCCCcccc
Q psy15407        284 ---FADLHAITHLAIGGNPLYCDCGLAWLSEWVKRDYVEPGIARCTEPASMRD  333 (604)
Q Consensus       284 ---f~~l~~L~~L~L~~Npl~CdC~l~~l~~~~~~~~~~~~~~~C~~P~~l~g  333 (604)
                         +..+++|+.|+|++|||.|+|...|+..|.+... ......|..|....+
T Consensus       332 ~~~~~~~~~L~~L~l~~N~~~~~~~~~~~~~~~~~~~-~~~~~~c~~~~~~~~  383 (390)
T 3o6n_A          332 TLKLSTHHTLKNLTLSHNDWDCNSLRALFRNVARPAV-DDADQHCKIDYQLEH  383 (390)
T ss_dssp             CCCCCTTCCCSEEECCSSCEEHHHHHHHTTTCCTTTB-CCCCSCCCTTCEEET
T ss_pred             eeCchhhccCCEEEcCCCCccchhHHHHHHHHHhhcc-cccCceecccccccc
Confidence               4456778889999999999998888877655443 233456766655444

>2vj3_A Neurogenic locus notch homolog protein 1; transcription, metal-binding, transmembrane, developmental protein, notch signaling pathway; 2.60A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 1toz_A 2rqz_A* 2rr0_A 2rr2_A*

Probab=99.86  E-value=2e-21  Score=170.00  Aligned_cols=114  Identities=37%  Similarity=1.099  Sum_probs=88.5

Q ss_pred             CCCcCC--CCCCCCCcEEEeCCCCeEEecCCCCCCCCcccCCCcCCCCCCCCCCCCceeecCCCeEEecCCCCcCCcCcc
Q psy15407        435 NIDDCL--SHKCENNATCVDLIQAYECRCAPGFQGEFCQTKTPFCAGEYNPCRNGARCLDHFSHYTCECTPGFSGVNCTV  512 (604)
Q Consensus       435 ~~~~C~--~~~C~~~~~C~~~~~~~~C~C~~g~~g~~C~~~~~~C~~~~~~C~~~~~C~~~~~~~~C~C~~g~~g~~c~~  512 (604)
                      ++++|.  ..+|.++++|+++.++|+|.|++||+|..|+.++++|..  ++|.++++|++..++|+|.|++||+|..|+.
T Consensus         4 dideC~~~~~~C~~~g~C~~~~g~~~C~C~~Gy~G~~C~~~~~~C~~--~~C~~~~~C~~~~g~~~C~C~~G~~G~~C~~   81 (135)
T 2vj3_A            4 DVDECSLGANPCEHAGKCINTLGSFECQCLQGYTGPRCEIDVNECVS--NPCQNDATCLDQIGEFQCICMPGYEGVHCEV   81 (135)
T ss_dssp             CCCTTTSSSCSSSTTCEEEECSSSEEEECCTTEESTTSCEECCTTTT--CCCCSSCEEEECSSCEEEECCTTEESSSSCE
T ss_pred             ccccccCCCCCCCCCCEeECCCCCEEEECCCCCcCCcccccCccCCC--CCCCCCCEEeCCCCCceeeCCCCCcCCccee
Confidence            677776  567777778887777788888888888777766777764  4677777887777778888888888888877


Q ss_pred             cCCCCCCCCCCCCCEEeeCCCCeEeeeCCCCccCCCCc
Q psy15407        513 NVDDCVNHMCQNGGTCVDGINDYTCKCEGDFVGKFCEI  550 (604)
Q Consensus       513 ~~~~C~~~~C~~~~~C~~~~~~y~C~C~~G~~G~~C~~  550 (604)
                      ++++|...+|.++|+|++..++|+|.|++||+|..|+.
T Consensus        82 ~~~~C~~~~C~~~g~C~~~~g~~~C~C~~G~~G~~C~~  119 (135)
T 2vj3_A           82 NTDECASSPCLHNGRCLDKINEFQCECPTGFTGHLCQV  119 (135)
T ss_dssp             ECCTTTTCCSTTTCEEEECSSCEEEECCTTEESSSSCE
T ss_pred             cCCcccCCCcCCCCEeECCCCCeEEECCCCCcCCccCc
Confidence            77778777888778888877888888888888888775

>1z1y_A Ookinete surface protein PVS25; four EGF-like domains, cell adhesion; HET: MLY; 2.00A {Plasmodium vivax} PDB: 1z27_A 1z3g_A

Probab=99.86  E-value=7.8e-23  Score=189.87  Aligned_cols=149  Identities=23%  Similarity=0.578  Sum_probs=124.8

Q ss_pred             CCCCCCCCcEEEeCCCCeEEecCCCCCCC---CcccCCCcCCCC--CCCCCCCCceeecC-----CCeEEecCCCCcCCc
Q psy15407        440 LSHKCENNATCVDLIQAYECRCAPGFQGE---FCQTKTPFCAGE--YNPCRNGARCLDHF-----SHYTCECTPGFSGVN  509 (604)
Q Consensus       440 ~~~~C~~~~~C~~~~~~~~C~C~~g~~g~---~C~~~~~~C~~~--~~~C~~~~~C~~~~-----~~~~C~C~~g~~g~~  509 (604)
                      ...||.+ ++|+++.++|+|.|++||+|.   .|+ ++++|...  .++|.++++|++..     ++|+|.|++||+|..
T Consensus         9 ~~~pC~n-g~C~~~~g~~~C~C~~G~~g~~~~~C~-~id~C~~~~~~~~C~~~~~C~~~~~~~~~g~y~C~C~~G~~g~~   86 (186)
T 1z1y_A            9 VDTICXN-GQLVQMSNHFXCMCNEGLVHLSENTCE-EXNECXXETLGXACGEFGQCIENPDPAQVNMYXCGCIEGYTLXE   86 (186)
T ss_dssp             TTCCCBT-EEEEECSSCEEEEECTTEEEEETTEEE-ECCCCSGGGTTSEEETTEEEEECSSTTSSCSEEEEECTTEEEET
T ss_pred             CCCCCCC-CEeECCCCCeEeECCCCCccCCCCccC-CCCcccCCCCCCCCCCCCEeecCCCCcCCCCEECCCCCCCccCC
Confidence            4678885 599999999999999999877   786 67889843  46899999999998     899999999999986


Q ss_pred             CcccCCCCCCCCCCCCCEEe----eCCCCeEeeeCCCCcc-----CCCCcCcccccCCCCCCCCCCCCC-CCCc-eeCCC
Q psy15407        510 CTVNVDDCVNHMCQNGGTCV----DGINDYTCKCEGDFVG-----KFCEIAPFVAMMYPQTSPCQHHDC-KNGI-CFQPQ  578 (604)
Q Consensus       510 c~~~~~~C~~~~C~~~~~C~----~~~~~y~C~C~~G~~G-----~~C~~~~~~~~~~~~~~~C~~~~C-~~g~-C~~~~  578 (604)
                      +...+++|...+|.++++|+    +..++|+|.|++||+|     ..|+..        ..++|.. .| .+++ |+++.
T Consensus        87 ~~C~~d~C~~~~C~~~g~C~~~~~~~~g~~~C~C~~Gy~g~~~~~~~C~~~--------~~~~C~~-~C~~~~~~C~n~~  157 (186)
T 1z1y_A           87 DTCVLDVCQYXNCGESGECIVEYLSEIQSAGCSCAIGXVPNPEDEXXCTXT--------GETACQL-XCNTDNEVCXNVE  157 (186)
T ss_dssp             TEEEEGGGTTCCCCTTEEEEEEEETTEEEEEEEECTEEEEETTTTTEEEEE--------ECCCCCC-CCCTTTEEEEEET
T ss_pred             CCCCCCcCcCCCCCCCCEEeeCCcCCCCCceEECCCCCcccCCCCCcceEc--------CCCcccc-cccccCcceecCC
Confidence            65457999999999999999    7888999999999998     667642        1356764 78 6655 99998


Q ss_pred             CCCCeeeecCCCCcCCCCCCCcc
Q psy15407        579 GSNDYLCKCAPGYSGKESLLQQT  601 (604)
Q Consensus       579 g~~~~~C~C~~G~~G~~C~~~~~  601 (604)
                        ++|+|.|++||+|..|+....
T Consensus       158 --g~y~C~C~~G~~g~~~~~~~~  178 (186)
T 1z1y_A          158 --GVYXCQCMEGFTFDXEXNVCL  178 (186)
T ss_dssp             --TEEEEEECTTCEEETTTTEEE
T ss_pred             --CCeeeECCCCCccCcccccCC
Confidence              889999999999999986543

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.85  E-value=3.1e-21  Score=213.56  Aligned_cols=200  Identities=26%  Similarity=0.331  Sum_probs=136.3

Q ss_pred             CCCCCCCeeC--CCeEEcCCCCCCcCCCCCCccCcEEecCCCcceeecCCCccCCCCCCcEEeCCCCcceecCCCcCCCc
Q psy15407         86 AACPSGCSCD--GTRVDCSQRGLKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGE  163 (604)
Q Consensus        86 ~~CP~~C~C~--~~~l~cs~~~L~~iP~~l~~~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~l  163 (604)
                      ..||..|.|.  ...|+|++.+|++||..+|..+++|+|++|.|+.+++. .|.++++|++|+|++|+|+.+.+.+|.++
T Consensus         2 ~~~~~~C~~~~~~~~~~c~~~~l~~iP~~l~~~l~~L~Ls~n~i~~~~~~-~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l   80 (606)
T 3t6q_A            2 TSSDQKCIEKEVNKTYNCENLGLNEIPGTLPNSTECLEFSFNVLPTIQNT-TFSRLINLTFLDLTRCQIYWIHEDTFQSQ   80 (606)
T ss_dssp             ----CCCEEEETTTEEECTTSCCSSCCTTSCTTCCEEECTTCCCSEECTT-TSTTCTTCSEEECTTCCCCEECTTTTTTC
T ss_pred             ccccCceecccCCceEECCCCCcccCcCCCCCcCcEEEccCCccCcCChh-HhccCccceEEECCCCccceeChhhccCc
Confidence            3579999996  67899999999999999999999999999999999764 49999999999999999999999999999


Q ss_pred             ccCCcCCCCCCCCCc--------cccccEEEccCCccccccccccceeeeeeccccCCccccceeecCCCCceeeccCCC
Q psy15407        164 NDQGCLGDNYCPPKC--------TCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSNFT  235 (604)
Q Consensus       164 ~~L~~L~l~~~~~~~--------~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~i~~l~~~~  235 (604)
                      .+|+.|+|++|.+..        ...++.+.+..+...         .....  .... ..+|++|+|++|+|+.++...
T Consensus        81 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~---------~l~~~--~~~~-l~~L~~L~L~~n~l~~~~~~~  148 (606)
T 3t6q_A           81 HRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGIS---------SIDFI--PLHN-QKTLESLYLGSNHISSIKLPK  148 (606)
T ss_dssp             TTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCS---------CGGGS--CCTT-CTTCCEEECCSSCCCCCCCCT
T ss_pred             cccCeeeCCCCcccccChhhhcccccccEeeccccCcc---------cCCcc--hhcc-CCcccEEECCCCcccccCccc
Confidence            999999999986432        222333333322111         10000  0011 125666666666666655444


Q ss_pred             CCCCCCCCeEEecCCcceeeeccccCCCCccc--EEEccCCccccCCcccccCcccceeeeccCCC
Q psy15407        236 FSPLSKLSQLILSYNKLQCIDRDALAGLKSLR--IISLHGNDISMIPEGAFADLHAITHLAIGGNP  299 (604)
Q Consensus       236 f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~--~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~Np  299 (604)
                      +..+++|++|+|++|+|+.+.+..|..+++|+  .|+|++|+|+.+++..|.. .+|+.|++++|.
T Consensus       149 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~~~  213 (606)
T 3t6q_A          149 GFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDS-AVFQSLNFGGTQ  213 (606)
T ss_dssp             TCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTT-CEEEEEECTTCS
T ss_pred             ccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHhhh-ccccccccCCch
Confidence            44566666666666666666666666666666  5666666666666655543 356666666654

>2vj3_A Neurogenic locus notch homolog protein 1; transcription, metal-binding, transmembrane, developmental protein, notch signaling pathway; 2.60A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 1toz_A 2rqz_A* 2rr0_A 2rr2_A*

Probab=99.85  E-value=3.1e-21  Score=168.89  Aligned_cols=120  Identities=38%  Similarity=0.978  Sum_probs=69.3

Q ss_pred             CCCc--CCCCCCCCeeecCCCCceeeeCCCCCcCCCCcccCCCCCCCCCCCCCeeeeCCCCceEeeCCCCCcCCCCCcCC
Q psy15407        359 NACY--KSPCTNQGVCEPLPERQYQCRCTPGYHGQHCEFMIDACYGNPCRNSGTCKLLEEGRFNCECAPGYTGDRCEINI  436 (604)
Q Consensus       359 ~~C~--~~~C~~~g~C~~~~~~~~~C~C~~g~~G~~c~~~~~~C~~~~C~~~~~C~~~~~~~~~C~C~~g~~g~~C~~~~  436 (604)
                      ++|.  .+||.++|+|++.. ++|+|.|++||+|..|+.++++|...||.++++|.+. .++|.|.|++||+|..|+.++
T Consensus         6 deC~~~~~~C~~~g~C~~~~-g~~~C~C~~Gy~G~~C~~~~~~C~~~~C~~~~~C~~~-~g~~~C~C~~G~~G~~C~~~~   83 (135)
T 2vj3_A            6 DECSLGANPCEHAGKCINTL-GSFECQCLQGYTGPRCEIDVNECVSNPCQNDATCLDQ-IGEFQCICMPGYEGVHCEVNT   83 (135)
T ss_dssp             CTTTSSSCSSSTTCEEEECS-SSEEEECCTTEESTTSCEECCTTTTCCCCSSCEEEEC-SSCEEEECCTTEESSSSCEEC
T ss_pred             ccccCCCCCCCCCCEeECCC-CCEEEECCCCCcCCcccccCccCCCCCCCCCCEEeCC-CCCceeeCCCCCcCCcceecC
Confidence            4454  45666666666543 4566666666666666555666666666666666552 455666666666666666556


Q ss_pred             CcCCCCCCCCCcEEEeCCCCeEEecCCCCCCCCcccCCCcCCCC
Q psy15407        437 DDCLSHKCENNATCVDLIQAYECRCAPGFQGEFCQTKTPFCAGE  480 (604)
Q Consensus       437 ~~C~~~~C~~~~~C~~~~~~~~C~C~~g~~g~~C~~~~~~C~~~  480 (604)
                      ++|...+|.++++|++..++|.|.|++||+|..|+.++++|...
T Consensus        84 ~~C~~~~C~~~g~C~~~~g~~~C~C~~G~~G~~C~~~i~~C~~~  127 (135)
T 2vj3_A           84 DECASSPCLHNGRCLDKINEFQCECPTGFTGHLCQVDLHHILDA  127 (135)
T ss_dssp             CTTTTCCSTTTCEEEECSSCEEEECCTTEESSSSCEECC-----
T ss_pred             CcccCCCcCCCCEeECCCCCeEEECCCCCcCCccCccCccccCC
Confidence            66666666666666666666666666666666665555555543

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.84  E-value=8.9e-21  Score=209.20  Aligned_cols=234  Identities=16%  Similarity=0.235  Sum_probs=154.8

Q ss_pred             CCeEEcCCCCCCcCCCCC---CccCcEEecCCCcceeecCCCccCCCCCCcEEeCCCCcceecCCCcCCCcccCCcCCCC
Q psy15407         96 GTRVDCSQRGLKEIPKDI---PLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDN  172 (604)
Q Consensus        96 ~~~l~cs~~~L~~iP~~l---~~~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~l~  172 (604)
                      -+.|++++|.|+.+|...   ...+++|+|++|.|+.+++ .+|.++++|++|+|++|.|+.+.+.+|.++++|+.|+|+
T Consensus       101 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~  179 (597)
T 3oja_B          101 IQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPR-GIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLS  179 (597)
T ss_dssp             CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECT
T ss_pred             CCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCH-HHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECc
Confidence            367888888888877654   3566888888888888876 347888888888888888888888888888888888888


Q ss_pred             CCCCCc-----cccccEEEccCCcc----------ccccccccceee---------------eee--ccccCCcccccee
Q psy15407        173 YCPPKC-----TCTVRVLFYDGRAG----------ECYIAVELFSSR---------------IRV--SYYVGNYPVSTMY  220 (604)
Q Consensus       173 ~~~~~~-----~~~l~~l~~~~~~~----------~~~~~~~~~~~~---------------~~~--~~~~~~~~~~L~~  220 (604)
                      +|.+..     +..+..+.+..+..          .+.+..+.+...               ..+  ......+ .+|+.
T Consensus       180 ~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~l~~l-~~L~~  258 (597)
T 3oja_B          180 SNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNY-PGLVE  258 (597)
T ss_dssp             TSCCSBCCGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCCGGGGGC-TTCSE
T ss_pred             CCCCCCcChhhhhhhhhhhcccCccccccCCchhheeeccCCcccccccccCCCCCEEECCCCCCCCChhhccC-CCCCE
Confidence            875432     23333443332211          111111111000               000  0011122 37788


Q ss_pred             ecCCCCceeeccCCCCCCCCCCCeEEecCCcceeeeccccCCCCcccEEEccCCccccCCccc-----------------
Q psy15407        221 RDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGA-----------------  283 (604)
Q Consensus       221 L~Ls~N~i~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~-----------------  283 (604)
                      |+|++|.|+.+.+..|..+++|+.|+|++|+|+.++ ..+..+++|+.|+|++|.|+.+|..+                 
T Consensus       259 L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~-~~~~~l~~L~~L~Ls~N~l~~i~~~~~~l~~L~~L~L~~N~l~  337 (597)
T 3oja_B          259 VDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALN-LYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIV  337 (597)
T ss_dssp             EECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEEE-CSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCC
T ss_pred             EECCCCccCCCCHHHhcCccCCCEEECCCCCCCCCC-cccccCCCCcEEECCCCCCCccCcccccCCCCCEEECCCCCCC
Confidence            888888888887778888888888888888888874 34566777888888877777766532                 


Q ss_pred             ---ccCcccceeeeccCCCcccccCCCccccccccccccCCccccCCCCcccc
Q psy15407        284 ---FADLHAITHLAIGGNPLYCDCGLAWLSEWVKRDYVEPGIARCTEPASMRD  333 (604)
Q Consensus       284 ---f~~l~~L~~L~L~~Npl~CdC~l~~l~~~~~~~~~~~~~~~C~~P~~l~g  333 (604)
                         +..+++|+.|+|++|||.|+|...|+..|..... ......|..+..+.+
T Consensus       338 ~~~~~~~~~L~~L~l~~N~~~~~~~~~~~~~~~~~~~-~~~~~~C~~~~~~~~  389 (597)
T 3oja_B          338 TLKLSTHHTLKNLTLSHNDWDCNSLRALFRNVARPAV-DDADQHCKIDYQLEH  389 (597)
T ss_dssp             CCCCCTTCCCSEEECCSSCEEHHHHHHHTTTCCTTTB-CCCCCCCCTTCEEET
T ss_pred             CcChhhcCCCCEEEeeCCCCCChhHHHHHHHHhhhcc-ccccccCCcchhccC
Confidence               4556788889999999999998888777654432 223345666554444

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.84  E-value=9.5e-22  Score=214.99  Aligned_cols=219  Identities=19%  Similarity=0.273  Sum_probs=168.0

Q ss_pred             CCeEEcCCCCCCcCCCCC---CccCcEEecCCCcceeecC--CCccCCCCCCcEEeCCCCcceecCC--CcCCCcccCCc
Q psy15407         96 GTRVDCSQRGLKEIPKDI---PLYTTELILNDNEIGKIKS--DGLFGRLPNLIKLDLRRNQVTGIED--NAFEGENDQGC  168 (604)
Q Consensus        96 ~~~l~cs~~~L~~iP~~l---~~~~~~L~L~~N~i~~i~~--~~~f~~l~~L~~L~Ls~N~i~~i~~--~~f~~l~~L~~  168 (604)
                      -+.|+++++.++.+|..+   ...+++|+|++|+|+...+  ...+..+++|++|+|++|+|+.+++  ..|..+++|+.
T Consensus       312 L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~  391 (549)
T 2z81_A          312 VKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTS  391 (549)
T ss_dssp             CCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCE
T ss_pred             ceEEEeccCccccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCE
Confidence            367899999999999765   4678999999999976421  1237889999999999999998864  56889999999


Q ss_pred             CCCCCCCCCccccccEEEccCCccccccccccceeeeeeccccCCccccceeecCCCCceeeccCCCCCCCCCCCeEEec
Q psy15407        169 LGDNYCPPKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILS  248 (604)
Q Consensus       169 L~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~i~~l~~~~f~~l~~L~~L~Ls  248 (604)
                      |++++|.+..++..  +........+.+..+.+      ..+.+..+.+|++|+|++|+|+.++    ..+++|++|+|+
T Consensus       392 L~Ls~N~l~~lp~~--~~~~~~L~~L~Ls~N~l------~~l~~~~~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls  459 (549)
T 2z81_A          392 LDISRNTFHPMPDS--CQWPEKMRFLNLSSTGI------RVVKTCIPQTLEVLDVSNNNLDSFS----LFLPRLQELYIS  459 (549)
T ss_dssp             EECTTCCCCCCCSC--CCCCTTCCEEECTTSCC------SCCCTTSCTTCSEEECCSSCCSCCC----CCCTTCCEEECC
T ss_pred             EECCCCCCccCChh--hcccccccEEECCCCCc------ccccchhcCCceEEECCCCChhhhc----ccCChhcEEECC
Confidence            99999876543320  11111222222222222      1222333458999999999998764    478999999999


Q ss_pred             CCcceeeeccccCCCCcccEEEccCCccccCCcccccCcccceeeeccCCCcccccC-CCcccccccccc-ccCCccccC
Q psy15407        249 YNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIGGNPLYCDCG-LAWLSEWVKRDY-VEPGIARCT  326 (604)
Q Consensus       249 ~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~Npl~CdC~-l~~l~~~~~~~~-~~~~~~~C~  326 (604)
                      +|+|+.|+.  +..+++|++|+|++|+|+.+++..|..+++|+.|+|++|||.|+|. +.|+.+|++... ...+...|.
T Consensus       460 ~N~l~~ip~--~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~~~l~~~l~~~~~~~~~~~~C~  537 (549)
T 2z81_A          460 RNKLKTLPD--ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQGSAKCS  537 (549)
T ss_dssp             SSCCSSCCC--GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHHHHHHHHHHHHHCTTTEESCCBBT
T ss_pred             CCccCcCCC--cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCccHHHHHHHHHhcccccCCCCeEC
Confidence            999999865  3568999999999999999999999999999999999999999999 688888986543 344567888


Q ss_pred             CC
Q psy15407        327 EP  328 (604)
Q Consensus       327 ~P  328 (604)
                      .|
T Consensus       538 ~~  539 (549)
T 2z81_A          538 GS  539 (549)
T ss_dssp             TT
T ss_pred             CC
Confidence            87

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.84  E-value=2.1e-21  Score=210.90  Aligned_cols=216  Identities=16%  Similarity=0.221  Sum_probs=147.0

Q ss_pred             CeEEcCCCCCCcCCC-CCC-----ccCcEEecCCCcceeecCCCccCCCCCCcEEeCCCCcceecCCCcCCCcccCCcCC
Q psy15407         97 TRVDCSQRGLKEIPK-DIP-----LYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLG  170 (604)
Q Consensus        97 ~~l~cs~~~L~~iP~-~l~-----~~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~  170 (604)
                      +.++++++.+ .+|. .+.     ..++.|+|++|.|..++.   +..+++|++|+|++|+|+.+.+..|..+++|+.|+
T Consensus       279 ~~l~l~~n~~-~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  354 (520)
T 2z7x_B          279 SIHQVVSDVF-GFPQSYIYEIFSNMNIKNFTVSGTRMVHMLC---PSKISPFLHLDFSNNLLTDTVFENCGHLTELETLI  354 (520)
T ss_dssp             EEEEEEECCC-CSCTHHHHHHHHTCCCSEEEEESSCCCCCCC---CSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEE
T ss_pred             Eeccccccce-ecchhhhhcccccCceeEEEcCCCccccccc---hhhCCcccEEEeECCccChhhhhhhccCCCCCEEE
Confidence            3556666666 5552 111     235666666666654421   25566666666666666665556666666666666


Q ss_pred             CCCCCCCcc----------ccccEEEccCCccccccccccceeeeeeccccCCccccceeecCCCCceeeccCCCCCCCC
Q psy15407        171 DNYCPPKCT----------CTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLS  240 (604)
Q Consensus       171 l~~~~~~~~----------~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~i~~l~~~~f~~l~  240 (604)
                      +++|.+..+          ..++.+.+..+.....++.         ..+ .. ..+|++|+|++|+|+...+..+.  +
T Consensus       355 L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~---------~~~-~~-l~~L~~L~Ls~N~l~~~~~~~l~--~  421 (520)
T 2z7x_B          355 LQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKK---------GDC-SW-TKSLLSLNMSSNILTDTIFRCLP--P  421 (520)
T ss_dssp             CCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGG---------CSC-CC-CTTCCEEECCSSCCCGGGGGSCC--T
T ss_pred             ccCCccCccccchHHHhhCCCCCEEECCCCcCCccccc---------chh-cc-CccCCEEECcCCCCCcchhhhhc--c
Confidence            666654432          1223333322221110110         001 11 23899999999999766554443  7


Q ss_pred             CCCeEEecCCcceeeeccccCCCCcccEEEccCCccccCCcccccCcccceeeeccCCCcccccCCCcc-ccccccccc-
Q psy15407        241 KLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIGGNPLYCDCGLAWL-SEWVKRDYV-  318 (604)
Q Consensus       241 ~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~Npl~CdC~l~~l-~~~~~~~~~-  318 (604)
                      +|++|+|++|+|+.++...+ .+++|++|+|++|+|+.+|...|..+++|+.|+|++|||.|+|.+.|| ..|+++... 
T Consensus       422 ~L~~L~Ls~N~l~~ip~~~~-~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~~~~~~~~~~~~~~~~  500 (520)
T 2z7x_B          422 RIKVLDLHSNKIKSIPKQVV-KLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQK  500 (520)
T ss_dssp             TCCEEECCSSCCCCCCGGGG-GCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHHHHHHHHHHHHHTTTT
T ss_pred             cCCEEECCCCcccccchhhh-cCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCcccCCchHHHHHHHHhcccc
Confidence            99999999999999966555 899999999999999999998899999999999999999999999999 999876443 


Q ss_pred             cCCccccCCCCc
Q psy15407        319 EPGIARCTEPAS  330 (604)
Q Consensus       319 ~~~~~~C~~P~~  330 (604)
                      .....+|+.|..
T Consensus       501 ~~~~~~C~~p~~  512 (520)
T 2z7x_B          501 EQGSAKCSGSGK  512 (520)
T ss_dssp             EESCCBBTTTCC
T ss_pred             CCCCCCcCCccc
Confidence            445678999843

>1z1y_A Ookinete surface protein PVS25; four EGF-like domains, cell adhesion; HET: MLY; 2.00A {Plasmodium vivax} PDB: 1z27_A 1z3g_A

Probab=99.84  E-value=4.9e-22  Score=184.49  Aligned_cols=145  Identities=21%  Similarity=0.538  Sum_probs=116.5

Q ss_pred             CCCCCCCCCeeeeCCCCceEeeCCCCCcCC---CCCcCCCcCC----CCCCCCCcEEEeCC-----CCeEEecCCCCCCC
Q psy15407        401 YGNPCRNSGTCKLLEEGRFNCECAPGYTGD---RCEINIDDCL----SHKCENNATCVDLI-----QAYECRCAPGFQGE  468 (604)
Q Consensus       401 ~~~~C~~~~~C~~~~~~~~~C~C~~g~~g~---~C~~~~~~C~----~~~C~~~~~C~~~~-----~~~~C~C~~g~~g~  468 (604)
                      ..+||.+ |+|++ ..++|+|.|++||+|.   .|+ ++++|.    ..+|.++++|+++.     ++|+|.|++||+|.
T Consensus         9 ~~~pC~n-g~C~~-~~g~~~C~C~~G~~g~~~~~C~-~id~C~~~~~~~~C~~~~~C~~~~~~~~~g~y~C~C~~G~~g~   85 (186)
T 1z1y_A            9 VDTICXN-GQLVQ-MSNHFXCMCNEGLVHLSENTCE-EXNECXXETLGXACGEFGQCIENPDPAQVNMYXCGCIEGYTLX   85 (186)
T ss_dssp             TTCCCBT-EEEEE-CSSCEEEEECTTEEEEETTEEE-ECCCCSGGGTTSEEETTEEEEECSSTTSSCSEEEEECTTEEEE
T ss_pred             CCCCCCC-CEeEC-CCCCeEeECCCCCccCCCCccC-CCCcccCCCCCCCCCCCCEeecCCCCcCCCCEECCCCCCCccC
Confidence            4567774 48876 3577888888888876   676 778888    67788888898887     78899999999887


Q ss_pred             CcccCCCcCCCCCCCCCCCCcee----ecCCCeEEecCCCCcC-----CcCccc-CCCCCCCCC-CCCCEEeeCCCCeEe
Q psy15407        469 FCQTKTPFCAGEYNPCRNGARCL----DHFSHYTCECTPGFSG-----VNCTVN-VDDCVNHMC-QNGGTCVDGINDYTC  537 (604)
Q Consensus       469 ~C~~~~~~C~~~~~~C~~~~~C~----~~~~~~~C~C~~g~~g-----~~c~~~-~~~C~~~~C-~~~~~C~~~~~~y~C  537 (604)
                      .+...+++|..  .+|.++++|+    +..++|+|.|++||+|     ..|+.. +++|.. +| .++++|++..++|+|
T Consensus        86 ~~~C~~d~C~~--~~C~~~g~C~~~~~~~~g~~~C~C~~Gy~g~~~~~~~C~~~~~~~C~~-~C~~~~~~C~n~~g~y~C  162 (186)
T 1z1y_A           86 EDTCVLDVCQY--XNCGESGECIVEYLSEIQSAGCSCAIGXVPNPEDEXXCTXTGETACQL-XCNTDNEVCXNVEGVYXC  162 (186)
T ss_dssp             TTEEEEGGGTT--CCCCTTEEEEEEEETTEEEEEEEECTEEEEETTTTTEEEEEECCCCCC-CCCTTTEEEEEETTEEEE
T ss_pred             CCCCCCCcCcC--CCCCCCCEEeeCCcCCCCCceEECCCCCcccCCCCCcceEcCCCcccc-cccccCcceecCCCCeee
Confidence            55444677865  3688888888    7777899999999988     777642 588974 89 889999999999999


Q ss_pred             eeCCCCccCCCCcC
Q psy15407        538 KCEGDFVGKFCEIA  551 (604)
Q Consensus       538 ~C~~G~~G~~C~~~  551 (604)
                      .|++||+|..|+..
T Consensus       163 ~C~~G~~g~~~~~~  176 (186)
T 1z1y_A          163 QCMEGFTFDXEXNV  176 (186)
T ss_dssp             EECTTCEEETTTTE
T ss_pred             ECCCCCccCccccc
Confidence            99999999998764

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.83  E-value=1.7e-20  Score=207.58  Aligned_cols=200  Identities=25%  Similarity=0.294  Sum_probs=147.9

Q ss_pred             CCCCCeeCCCeEEcCCCCCCcCCCCCCccCcEEecCCCcceeecCCCccCCCCCCcEEeCCCCcceecCCCcCCCcccCC
Q psy15407         88 CPSGCSCDGTRVDCSQRGLKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQG  167 (604)
Q Consensus        88 CP~~C~C~~~~l~cs~~~L~~iP~~l~~~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~  167 (604)
                      +|-.|......|+|++++|++||..+|..+++|+|++|.|+.+++. .|.++++|++|+|++|+|+.+.+.+|.++.+|+
T Consensus         5 ~~c~~~~~~~~~~c~~~~l~~ip~~~~~~l~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~   83 (606)
T 3vq2_A            5 NPCIEVVPNITYQCMDQKLSKVPDDIPSSTKNIDLSFNPLKILKSY-SFSNFSELQWLDLSRCEIETIEDKAWHGLHHLS   83 (606)
T ss_dssp             -CCEEEETTTEEECTTSCCSSCCTTSCTTCCEEECTTSCCCEECTT-TTTTCTTCCEEECTTCCCCEECTTTTTTCTTCC
T ss_pred             CCceecCCCCceEccCCCcccCCCCCCCCcCEEECCCCCcCEeChh-hccCCccCcEEeCCCCcccccCHHHhhchhhcC
Confidence            3433334578999999999999999999999999999999999874 499999999999999999999999999999999


Q ss_pred             cCCCCCCCCCcc--------ccccEEEccCCccccccccccceeeeeeccccCCccccceeecCCCCceeecc-CCCCCC
Q psy15407        168 CLGDNYCPPKCT--------CTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLS-NFTFSP  238 (604)
Q Consensus       168 ~L~l~~~~~~~~--------~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~i~~l~-~~~f~~  238 (604)
                      .|+|++|.+..+        ..++.+.+..+.         +......  ..+.. .+|++|+|++|.|+.+. +..|.+
T Consensus        84 ~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~---------l~~~~~~--~~~~l-~~L~~L~L~~n~l~~~~lp~~~~~  151 (606)
T 3vq2_A           84 NLILTGNPIQSFSPGSFSGLTSLENLVAVETK---------LASLESF--PIGQL-ITLKKLNVAHNFIHSCKLPAYFSN  151 (606)
T ss_dssp             EEECTTCCCCCCCTTSSTTCTTCCEEECTTSC---------CCCSSSS--CCTTC-TTCCEEECCSSCCCCCCCCGGGGT
T ss_pred             EeECCCCcccccChhhcCCcccCCEEEccCCc---------ccccccc--ccCCC-CCCCEEeCCCCcccceechHhHhh
Confidence            999999864432        233333333322         1111100  01111 27777888888777643 556777


Q ss_pred             CCCCCeEEecCCcceeeeccccCCCCccc----EEEccCCccccCCcccccCcccceeeeccCCCcc
Q psy15407        239 LSKLSQLILSYNKLQCIDRDALAGLKSLR----IISLHGNDISMIPEGAFADLHAITHLAIGGNPLY  301 (604)
Q Consensus       239 l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~----~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~Npl~  301 (604)
                      +++|++|+|++|+|+.+++..|..+.+|+    +|+|++|.|+.+++..|... +|+.|+|++|.+.
T Consensus       152 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~-~L~~L~L~~n~~~  217 (606)
T 3vq2_A          152 LTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNS  217 (606)
T ss_dssp             CTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSC
T ss_pred             cCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCcceeCcccccCc-eeeeeeccCCccc
Confidence            78888888888888877777776666554    67888888887777776655 7888888888764

>2ygq_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling pathway, WNT antagonist, MO cancer, glycosaminoglycan; HET: PCF NAG FUC SCR; 3.95A {Homo sapiens}

Probab=99.83  E-value=4.5e-21  Score=192.36  Aligned_cols=162  Identities=35%  Similarity=0.917  Sum_probs=78.7

Q ss_pred             CCCCCCCCCCCCeeeeCCCCceEeeCCCCCcCCCCCcCCCcCCCCCCCCCcEEEeCCCCeEEecCCCCCCCCcccCCCcC
Q psy15407        398 DACYGNPCRNSGTCKLLEEGRFNCECAPGYTGDRCEINIDDCLSHKCENNATCVDLIQAYECRCAPGFQGEFCQTKTPFC  477 (604)
Q Consensus       398 ~~C~~~~C~~~~~C~~~~~~~~~C~C~~g~~g~~C~~~~~~C~~~~C~~~~~C~~~~~~~~C~C~~g~~g~~C~~~~~~C  477 (604)
                      ..|. ++|.++|+|..    .+.|.|++||+|..|+.  +.|. .+|.++|+|++   .+.|.|++||+|..|+.  +.|
T Consensus       149 ~~C~-~~C~~~G~C~~----~~~C~C~~G~~G~~C~~--~~C~-~~C~~~G~C~~---~~~C~C~~G~~G~~C~~--~~C  215 (324)
T 2ygq_A          149 AECP-GGCRNGGFCNE----RRICECPDGFHGPHCEK--ALCT-PRCMNGGLCVT---PGFCICPPGFYGVNCDK--ANC  215 (324)
T ss_dssp             CCCS-SCCCSSCEECT----TSCEECCTTEESSSSCE--ESSS-SCCCTTCEECS---SCCEECCTTCBTTTTCB--CCC
T ss_pred             CCCC-CCCCCCCEECC----CCeEECCCCCcCCCCCC--CCCC-CCCCCCCEEcC---CCEEeCCCCccCCCccc--CcC
Confidence            3553 67999999953    47899999999999985  4575 47999999975   47899999999999975  346


Q ss_pred             CCCCCCCCCCCceeecCCCeEEecCCCCcCCcCcccCCCCCCCCCCCCCEEeeCCCCeEeeeCCCCccCCCCcCcccccC
Q psy15407        478 AGEYNPCRNGARCLDHFSHYTCECTPGFSGVNCTVNVDDCVNHMCQNGGTCVDGINDYTCKCEGDFVGKFCEIAPFVAMM  557 (604)
Q Consensus       478 ~~~~~~C~~~~~C~~~~~~~~C~C~~g~~g~~c~~~~~~C~~~~C~~~~~C~~~~~~y~C~C~~G~~G~~C~~~~~~~~~  557 (604)
                      .   .+|.++|+|+.   .++|.|++||+|..|+  +++|. .+|.++|+|+.   .|+|.|++||+|..|+..      
T Consensus       216 ~---~~C~~~G~C~~---~~~C~C~~G~~G~~C~--~~~C~-~~C~~~g~C~~---~~~C~C~~G~~G~~C~~~------  277 (324)
T 2ygq_A          216 S---TTCFNGGTCFY---PGKCICPPGLEGEQCE--ISKCP-QPCRNGGKCIG---KSKCKCSKGYQGDLCSKP------  277 (324)
T ss_dssp             S---SCCCSSCCBSC---SSCBCCCTTCCTTTTC----------------------------------------------
T ss_pred             C---CCCCCCCeeCC---CCeeeCCCCccCCCCC--cCcCC-CcCCCCCEECC---CCEEECCCCCcCCCCcCC------
Confidence            5   48999999976   3689999999999997  35675 68999999984   579999999999999842      


Q ss_pred             CCCCCCCCCCCCCC-CceeCCCCCCCeeeecCCCCcCCCCCCCcc
Q psy15407        558 YPQTSPCQHHDCKN-GICFQPQGSNDYLCKCAPGYSGKESLLQQT  601 (604)
Q Consensus       558 ~~~~~~C~~~~C~~-g~C~~~~g~~~~~C~C~~G~~G~~C~~~~~  601 (604)
                           .|. ..|.+ |.|++     .++|.|++||+|++|+....
T Consensus       278 -----~C~-~~C~~~g~C~~-----~~~C~C~~G~~G~~C~~~~~  311 (324)
T 2ygq_A          278 -----VCE-PGCGAHGTCHE-----PNKCQCQEGWHGRHCNKRYE  311 (324)
T ss_dssp             ---------------------------------------------
T ss_pred             -----CCC-CCCCCCCEECC-----CCEeECCCCCcCCCCCCCCc
Confidence                 343 34644 45875     36899999999999987643

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.83  E-value=1e-20  Score=207.75  Aligned_cols=221  Identities=20%  Similarity=0.216  Sum_probs=148.6

Q ss_pred             CCCeEEcCCCCCCcCCCCCCccC----------------------cEEecCCCcceeec--CCCccCCCCCCcEEeCCCC
Q psy15407         95 DGTRVDCSQRGLKEIPKDIPLYT----------------------TELILNDNEIGKIK--SDGLFGRLPNLIKLDLRRN  150 (604)
Q Consensus        95 ~~~~l~cs~~~L~~iP~~l~~~~----------------------~~L~L~~N~i~~i~--~~~~f~~l~~L~~L~Ls~N  150 (604)
                      .-+.|+++++.++.+|......+                      ++|+|++|.|+.+.  + ..|..+++|++|+|++|
T Consensus       305 ~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~-~~~~~~~~L~~L~l~~n  383 (570)
T 2z63_A          305 GWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCS-QSDFGTTSLKYLDLSFN  383 (570)
T ss_dssp             CCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCCCCBCTTCCEEECCSSCCBEEEEEE-HHHHTCSCCCEEECCSC
T ss_pred             CccEEeeccCcccccCcccccccCEEeCcCCccccccccccCCCCCEEeCcCCccCcccccc-ccccccCccCEEECCCC
Confidence            44667777777777766433344                      45555555554432  1 11445555555555555


Q ss_pred             cceecCCCcCCCcccCCcCCCCCCCCC---------ccccccEEEccCCccccccccccceeeeeeccccCCccccceee
Q psy15407        151 QVTGIEDNAFEGENDQGCLGDNYCPPK---------CTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYR  221 (604)
Q Consensus       151 ~i~~i~~~~f~~l~~L~~L~l~~~~~~---------~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L  221 (604)
                      .|+.+++. |..+++|+.|++++|...         ....++.+.+..+.         +...  ........ .+|++|
T Consensus       384 ~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~---------l~~~--~~~~~~~l-~~L~~L  450 (570)
T 2z63_A          384 GVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH---------TRVA--FNGIFNGL-SSLEVL  450 (570)
T ss_dssp             SEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSC---------CEEC--CTTTTTTC-TTCCEE
T ss_pred             cccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCc---------cccc--chhhhhcC-CcCcEE
Confidence            55555544 555555555555554211         11222222222221         1111  01111222 389999


Q ss_pred             cCCCCcee-eccCCCCCCCCCCCeEEecCCcceeeeccccCCCCcccEEEccCCccccCCcccccCcccceeeeccCCCc
Q psy15407        222 DLSNNQIG-FLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIGGNPL  300 (604)
Q Consensus       222 ~Ls~N~i~-~l~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~Npl  300 (604)
                      +|++|+|+ ...+..|..+++|++|+|++|+|+.+.+..|..+++|++|+|++|+|+.+++..|..+++|+.|+|++|||
T Consensus       451 ~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~  530 (570)
T 2z63_A          451 KMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPW  530 (570)
T ss_dssp             ECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred             ECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcc
Confidence            99999997 34457899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccCCCccc-cccccccc-cCCccccCCCC
Q psy15407        301 YCDCGLAWLS-EWVKRDYV-EPGIARCTEPA  329 (604)
Q Consensus       301 ~CdC~l~~l~-~~~~~~~~-~~~~~~C~~P~  329 (604)
                      .|+|...|+. .|++.... ..+..+|.+|.
T Consensus       531 ~~~~~~~~~~~~wl~~~~~~~~~~~~C~~~~  561 (570)
T 2z63_A          531 DCSCPRIDYLSRWLNKNSQKEQGSAKCSGSG  561 (570)
T ss_dssp             CCCTTTTHHHHHHHHHTGGGEESCCBBTTTC
T ss_pred             cCCCcchHHHHHHHHhccccCCCchhhCCCC
Confidence            9999998887 99876432 22334888873

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.82  E-value=4.1e-20  Score=189.88  Aligned_cols=143  Identities=22%  Similarity=0.468  Sum_probs=111.4

Q ss_pred             CCCCC-eeCCCeEEcCCC-CCCcCCCCCCccCcEEecCCCcceeecCCCccCCCCCCcEEeCCC-CcceecCCCcCCCcc
Q psy15407         88 CPSGC-SCDGTRVDCSQR-GLKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRR-NQVTGIEDNAFEGEN  164 (604)
Q Consensus        88 CP~~C-~C~~~~l~cs~~-~L~~iP~~l~~~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~-N~i~~i~~~~f~~l~  164 (604)
                      ||..| .|.+..|+|+++ +|+.||. |                       ..+++|++|+|++ |+|+.+++.+|    
T Consensus         1 cp~~c~~C~~~~v~~~~~n~l~~ip~-l-----------------------~~~~~L~~L~l~~~n~l~~~~~~~~----   52 (347)
T 2ifg_A            1 CPDACCPHGSSGLRCTRDGALDSLHH-L-----------------------PGAENLTELYIENQQHLQHLELRDL----   52 (347)
T ss_dssp             CCSSSCCSSSSCEECCSSCCCTTTTT-S-----------------------CSCSCCSEEECCSCSSCCEECGGGS----
T ss_pred             CCCcCccccCCEEEcCCCCCCCccCC-C-----------------------CCCCCeeEEEccCCCCCCCcChhHh----
Confidence            89999 999999999998 8999885 4                       3345666777764 66666554444    


Q ss_pred             cCCcCCCCCCCCCccccccEEEccCCccccccccccceeeeeeccccCCccccceeecCCCCceeeccCCCCCCCCCCCe
Q psy15407        165 DQGCLGDNYCPPKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQ  244 (604)
Q Consensus       165 ~L~~L~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~i~~l~~~~f~~l~~L~~  244 (604)
                                                                                              .+|++|++
T Consensus        53 ------------------------------------------------------------------------~~l~~L~~   60 (347)
T 2ifg_A           53 ------------------------------------------------------------------------RGLGELRN   60 (347)
T ss_dssp             ------------------------------------------------------------------------CSCCCCSE
T ss_pred             ------------------------------------------------------------------------ccccCCCE
Confidence                                                                                    34556677


Q ss_pred             EEecCCcceeeeccccCCCCcccEEEccCCccccCCcccccCcccceeeeccCCCcccccCCCccccccccccc--cCCc
Q psy15407        245 LILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIGGNPLYCDCGLAWLSEWVKRDYV--EPGI  322 (604)
Q Consensus       245 L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~Npl~CdC~l~~l~~~~~~~~~--~~~~  322 (604)
                      |+|++|+|+.+++.+|..|++|+.|+|++|+|+.+|+..|..++ |+.|+|.+|+|.|+|.+.||..|++....  ..+.
T Consensus        61 L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c~c~l~~~~~~~~~~~~~l~~~~  139 (347)
T 2ifg_A           61 LTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLHCSCALRWLQRWEEEGLGGVPEQK  139 (347)
T ss_dssp             EECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEECCSSCCCCCGGGHHHHHHHHTTCSSCGGGC
T ss_pred             EECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEEEeeCCCccCCCccHHHHHHHHhCcccccccC
Confidence            77777777777777777888888888888888888888887776 99999999999999999999999876543  3456


Q ss_pred             cccCCCCcc
Q psy15407        323 ARCTEPASM  331 (604)
Q Consensus       323 ~~C~~P~~l  331 (604)
                      .+|..|..+
T Consensus       140 ~~C~~~~~l  148 (347)
T 2ifg_A          140 LQCHGQGPL  148 (347)
T ss_dssp             CCCSSSSCS
T ss_pred             CCCCCChHH
Confidence            889998733

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.82  E-value=9.9e-20  Score=199.85  Aligned_cols=194  Identities=25%  Similarity=0.315  Sum_probs=126.8

Q ss_pred             CCee--CCCeEEcCCCCCCcCCCCCCccCcEEecCCCcceeecCCCccCCCCCCcEEeCCCCcceecCCCcCCCcccCCc
Q psy15407         91 GCSC--DGTRVDCSQRGLKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGC  168 (604)
Q Consensus        91 ~C~C--~~~~l~cs~~~L~~iP~~l~~~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~  168 (604)
                      .|+|  ....++|++.+|++||..+|..++.|+|++|.|+.+++. .|.++++|++|+|++|+|+.+++.+|.++++|++
T Consensus         2 ~c~~~~~~~~~~c~~~~l~~ip~~l~~~l~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~   80 (570)
T 2z63_A            2 PCVEVVPNITYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSY-SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLST   80 (570)
T ss_dssp             CSEEEETTTEEECCSSCCSSCCSSSCSSCCEEECCSCCCCEECTT-TTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCE
T ss_pred             CccccCCCcEEEeCCCCccccCCCccccccEEEccCCccCccChh-HhhCCCCceEEECCCCcCCccCcccccCchhCCE
Confidence            4655  356899999999999999999999999999999999874 4999999999999999999999999999999999


Q ss_pred             CCCCCCCCCcc--------ccccEEEccCCccccccccccceeeeeeccccCCccccceeecCCCCceeecc-CCCCCCC
Q psy15407        169 LGDNYCPPKCT--------CTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLS-NFTFSPL  239 (604)
Q Consensus       169 L~l~~~~~~~~--------~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~i~~l~-~~~f~~l  239 (604)
                      |+|++|.+..+        ..++.+.+..+..         ......  ..+.. .+|++|+|++|.|+.+. +..|..+
T Consensus        81 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l---------~~l~~~--~~~~l-~~L~~L~L~~n~l~~~~lp~~~~~l  148 (570)
T 2z63_A           81 LILTGNPIQSLALGAFSGLSSLQKLVAVETNL---------ASLENF--PIGHL-KTLKELNVAHNLIQSFKLPEYFSNL  148 (570)
T ss_dssp             EECTTCCCCEECTTTTTTCTTCCEEECTTSCC---------CCSTTC--SCTTC-TTCCEEECCSSCCCCCCCCGGGGGC
T ss_pred             EeCcCCcCCccCHhhhcCcccccccccccccc---------ccCCCc--ccccc-ccccEEecCCCccceecChhhhccc
Confidence            99998864322        2222222222211         000000  00111 25555555555555432 3445555


Q ss_pred             CCCCeEEecCCcceeeeccccCCCCcc----cEEEccCCccccCCcccccCcccceeeeccCC
Q psy15407        240 SKLSQLILSYNKLQCIDRDALAGLKSL----RIISLHGNDISMIPEGAFADLHAITHLAIGGN  298 (604)
Q Consensus       240 ~~L~~L~Ls~N~l~~i~~~~f~~l~~L----~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N  298 (604)
                      ++|++|+|++|+|+.+++..|..+++|    +.|+|++|.|+.+++..|..+ +|+.|+|++|
T Consensus       149 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n  210 (570)
T 2z63_A          149 TNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNN  210 (570)
T ss_dssp             TTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESC
T ss_pred             CCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCceecCHHHhccC-cceeEecccc
Confidence            555555555555555555555555555    555555555555555555444 4555555555

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.82  E-value=1.2e-19  Score=184.99  Aligned_cols=185  Identities=21%  Similarity=0.292  Sum_probs=108.2

Q ss_pred             CeEEcCCCCCCcC-CCCC--CccCcEEecCCCcceeecCCCccCCCCCCcEEeCCCCcceecCCCcCCCcccCCcCCCCC
Q psy15407         97 TRVDCSQRGLKEI-PKDI--PLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDNY  173 (604)
Q Consensus        97 ~~l~cs~~~L~~i-P~~l--~~~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~l~~  173 (604)
                      +.|++++|.|+.+ |..+  ...+++|+|++|.|+.++.. ++   ++|++|+|++|+|+.+.+..|.++++|+.|++++
T Consensus        79 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~-~~---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~  154 (330)
T 1xku_A           79 HTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEK-MP---KTLQELRVHENEITKVRKSVFNGLNQMIVVELGT  154 (330)
T ss_dssp             CEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSS-CC---TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCS
T ss_pred             CEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChh-hc---ccccEEECCCCcccccCHhHhcCCccccEEECCC
Confidence            4555555555554 3333  23445555555555555432 11   4555555555555555555555555555555555


Q ss_pred             CCCCc----------cccccEEEccCCccccccccccceeeeeeccccCCccccceeecCCCCceeeccCCCCCCCCCCC
Q psy15407        174 CPPKC----------TCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLS  243 (604)
Q Consensus       174 ~~~~~----------~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~i~~l~~~~f~~l~~L~  243 (604)
                      |....          ...++.+.+..+.         +.      .+......+|++|+|++|+|+.+.+..|..+++|+
T Consensus       155 n~l~~~~~~~~~~~~l~~L~~L~l~~n~---------l~------~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~  219 (330)
T 1xku_A          155 NPLKSSGIENGAFQGMKKLSYIRIADTN---------IT------TIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLA  219 (330)
T ss_dssp             SCCCGGGBCTTGGGGCTTCCEEECCSSC---------CC------SCCSSCCTTCSEEECTTSCCCEECTGGGTTCTTCC
T ss_pred             CcCCccCcChhhccCCCCcCEEECCCCc---------cc------cCCccccccCCEEECCCCcCCccCHHHhcCCCCCC
Confidence            54321          1122222222111         11      11111123677777777777777777777777777


Q ss_pred             eEEecCCcceeeeccccCCCCcccEEEccCCccccCCcccccCcccceeeeccCCCcc
Q psy15407        244 QLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIGGNPLY  301 (604)
Q Consensus       244 ~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~Npl~  301 (604)
                      +|+|++|+|+.+++..|..+++|++|+|++|+|+.+|.. +..+++|+.|+|++|++.
T Consensus       220 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~-l~~l~~L~~L~l~~N~i~  276 (330)
T 1xku_A          220 KLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGG-LADHKYIQVVYLHNNNIS  276 (330)
T ss_dssp             EEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTT-TTTCSSCCEEECCSSCCC
T ss_pred             EEECCCCcCceeChhhccCCCCCCEEECCCCcCccCChh-hccCCCcCEEECCCCcCC
Confidence            777777777777777777777777777777777777663 566777777777777775

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.81  E-value=1.3e-19  Score=184.94  Aligned_cols=197  Identities=24%  Similarity=0.288  Sum_probs=154.4

Q ss_pred             CCeEEcCCCCCCcCCCCCCccCcEEecCCCcceeecCCCccCCCCCCcEEeCCCCccee--cCCCcCCCcccCCcCCCCC
Q psy15407         96 GTRVDCSQRGLKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTG--IEDNAFEGENDQGCLGDNY  173 (604)
Q Consensus        96 ~~~l~cs~~~L~~iP~~l~~~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~--i~~~~f~~l~~L~~L~l~~  173 (604)
                      -+.|++++|.|+.+|..++..+++|+|++|.|+.+++ ..|.++++|++|+|++|.|+.  +.+.+|..+ +|+.|++++
T Consensus       104 L~~L~L~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~  181 (332)
T 2ft3_A          104 LQKLYISKNHLVEIPPNLPSSLVELRIHDNRIRKVPK-GVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISE  181 (332)
T ss_dssp             CCEEECCSSCCCSCCSSCCTTCCEEECCSSCCCCCCS-GGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCS
T ss_pred             CCEEECCCCcCCccCccccccCCEEECCCCccCccCH-hHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcC
Confidence            3789999999999998888888999999999998876 358899999999999999864  778888888 899999988


Q ss_pred             CCCCccccccEEEccCCccccccccccceeeeeeccccCCccccceeecCCCCceeeccCCCCCCCCCCCeEEecCCcce
Q psy15407        174 CPPKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQ  253 (604)
Q Consensus       174 ~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~i~~l~~~~f~~l~~L~~L~Ls~N~l~  253 (604)
                      |.+..++...    ......+.+..+.+.....  ...... .+|++|+|++|+|+.+++..|..+++|++|+|++|+|+
T Consensus       182 n~l~~l~~~~----~~~L~~L~l~~n~i~~~~~--~~l~~l-~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  254 (332)
T 2ft3_A          182 AKLTGIPKDL----PETLNELHLDHNKIQAIEL--EDLLRY-SKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS  254 (332)
T ss_dssp             SBCSSCCSSS----CSSCSCCBCCSSCCCCCCT--TSSTTC-TTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC
T ss_pred             CCCCccCccc----cCCCCEEECCCCcCCccCH--HHhcCC-CCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe
Confidence            8655433211    1223333333332222110  011122 38999999999999999999999999999999999999


Q ss_pred             eeeccccCCCCcccEEEccCCccccCCcccccCc------ccceeeeccCCCccc
Q psy15407        254 CIDRDALAGLKSLRIISLHGNDISMIPEGAFADL------HAITHLAIGGNPLYC  302 (604)
Q Consensus       254 ~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l------~~L~~L~L~~Npl~C  302 (604)
                      .++. .|..+++|++|+|++|+|+.++...|..+      ..|+.|+|++||+..
T Consensus       255 ~lp~-~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~  308 (332)
T 2ft3_A          255 RVPA-GLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPY  308 (332)
T ss_dssp             BCCT-TGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCG
T ss_pred             ecCh-hhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccc
Confidence            8854 58899999999999999999998888653      578999999999974

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.81  E-value=6.3e-20  Score=185.53  Aligned_cols=199  Identities=18%  Similarity=0.170  Sum_probs=110.5

Q ss_pred             CeEEcCCCCCC---cCCCCC--CccCcEEecCC-CcceeecCCCccCCCCCCcEEeCCCCcceecCCCcCCCcccCCcCC
Q psy15407         97 TRVDCSQRGLK---EIPKDI--PLYTTELILND-NEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLG  170 (604)
Q Consensus        97 ~~l~cs~~~L~---~iP~~l--~~~~~~L~L~~-N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~  170 (604)
                      +.|++++++|+   .+|..+  ...+++|+|++ |.|....+. .|.++++|++|+|++|+|+...+..|..+++|++|+
T Consensus        53 ~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~-~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~  131 (313)
T 1ogq_A           53 NNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPP-AIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLD  131 (313)
T ss_dssp             EEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCG-GGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEE
T ss_pred             EEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCCh-hHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEe
Confidence            34556666665   355444  23445566653 555422221 155556666666666655555555555555555555


Q ss_pred             CCCCCCC--------ccccccEEEccCCccc----------------cccccccceeeeeeccccCCccccceeecCCCC
Q psy15407        171 DNYCPPK--------CTCTVRVLFYDGRAGE----------------CYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNN  226 (604)
Q Consensus       171 l~~~~~~--------~~~~l~~l~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N  226 (604)
                      +++|.+.        .+..++.+.+..+...                +.+..+.+...  .......  ..|++|+|++|
T Consensus       132 Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~--~~~~~~~--l~L~~L~Ls~N  207 (313)
T 1ogq_A          132 FSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGK--IPPTFAN--LNLAFVDLSRN  207 (313)
T ss_dssp             CCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEE--CCGGGGG--CCCSEEECCSS
T ss_pred             CCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeecc--CChHHhC--CcccEEECcCC
Confidence            5555321        1233444444333222                11111111100  0001111  13777777777


Q ss_pred             ceeeccCCCCCCCCCCCeEEecCCcceeeeccccCCCCcccEEEccCCccccCCcccccCcccceeeeccCCCcc
Q psy15407        227 QIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIGGNPLY  301 (604)
Q Consensus       227 ~i~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~Npl~  301 (604)
                      +|+.+.+..|..+++|+.|+|++|+|+...+. |..+++|++|+|++|+|+...+..|..+++|+.|+|++|++.
T Consensus       208 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~  281 (313)
T 1ogq_A          208 MLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLC  281 (313)
T ss_dssp             EEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEE
T ss_pred             cccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCccc
Confidence            77777777777777777777777777766444 666777777777777777555556777777777777777765

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.81  E-value=4.2e-20  Score=179.23  Aligned_cols=197  Identities=17%  Similarity=0.224  Sum_probs=151.2

Q ss_pred             CCCeEEcCCCCCCcCCCCC---CccCcEEecCCCc-ceeecCCCccCCCCCCcEEeCCC-CcceecCCCcCCCcccCCcC
Q psy15407         95 DGTRVDCSQRGLKEIPKDI---PLYTTELILNDNE-IGKIKSDGLFGRLPNLIKLDLRR-NQVTGIEDNAFEGENDQGCL  169 (604)
Q Consensus        95 ~~~~l~cs~~~L~~iP~~l---~~~~~~L~L~~N~-i~~i~~~~~f~~l~~L~~L~Ls~-N~i~~i~~~~f~~l~~L~~L  169 (604)
                      .-+.|++++++|+.+|...   ...+++|+|++|. |+.|++. .|.++++|++|+|++ |+|+.+++.+|.++++|+.|
T Consensus        32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~-~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L  110 (239)
T 2xwt_C           32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESH-SFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL  110 (239)
T ss_dssp             TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTT-TEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred             cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHh-HcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence            3578999999999998843   4567999999997 9999874 499999999999999 99999999999999999999


Q ss_pred             CCCCCCCCccccccEEEccCCccccccccc-cceeeeeeccccCCccccce-eecCCCCceeeccCCCCCCCCCCCeEEe
Q psy15407        170 GDNYCPPKCTCTVRVLFYDGRAGECYIAVE-LFSSRIRVSYYVGNYPVSTM-YRDLSNNQIGFLSNFTFSPLSKLSQLIL  247 (604)
Q Consensus       170 ~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~L~-~L~Ls~N~i~~l~~~~f~~l~~L~~L~L  247 (604)
                      ++++|.+..++.+..+.-......+.+..+ .+.... ...+ .. ..+|+ .|+|++|+|+.++...|.. ++|+.|+|
T Consensus       111 ~l~~n~l~~lp~~~~l~~L~~L~~L~l~~N~~l~~i~-~~~~-~~-l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L  186 (239)
T 2xwt_C          111 GIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIP-VNAF-QG-LCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYL  186 (239)
T ss_dssp             EEEEECCCSCCCCTTCCBCCSEEEEEEESCTTCCEEC-TTTT-TT-TBSSEEEEECCSCCCCEECTTTTTT-CEEEEEEC
T ss_pred             eCCCCCCccccccccccccccccEEECCCCcchhhcC-cccc-cc-hhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEc
Confidence            999987655432110000000012222222 111111 0111 11 23889 9999999999999988887 89999999


Q ss_pred             cCCc-ceeeeccccCCC-CcccEEEccCCccccCCcccccCcccceeeeccCCC
Q psy15407        248 SYNK-LQCIDRDALAGL-KSLRIISLHGNDISMIPEGAFADLHAITHLAIGGNP  299 (604)
Q Consensus       248 s~N~-l~~i~~~~f~~l-~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~Np  299 (604)
                      ++|+ |+.+++.+|..+ ++|+.|+|++|+|+.+|+.   .+++|+.|++.++.
T Consensus       187 ~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~~~~  237 (239)
T 2xwt_C          187 NKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK---GLEHLKELIARNTW  237 (239)
T ss_dssp             TTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT---TCTTCSEEECTTC-
T ss_pred             CCCCCcccCCHHHhhccccCCcEEECCCCccccCChh---HhccCceeeccCcc
Confidence            9995 999999999999 9999999999999999986   46678888888763

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.81  E-value=2.1e-19  Score=179.54  Aligned_cols=176  Identities=17%  Similarity=0.143  Sum_probs=143.1

Q ss_pred             ccCcEEecCCCcceeecCCCccCCCCCCcEEeCCCCcceecCCCcCCCcccCCcCCCCCCCCCccccccEEEccCCcccc
Q psy15407        115 LYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDNYCPPKCTCTVRVLFYDGRAGEC  194 (604)
Q Consensus       115 ~~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~l~~~~~~~~~~l~~l~~~~~~~~~  194 (604)
                      ..+++|++++|.|+.||..  +.  ++|+.|+|++|+|+.+.+.+|.++++|+.|+|++|.+..+...   .....+..+
T Consensus        10 ~~l~~l~~~~~~l~~ip~~--~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~---~~l~~L~~L   82 (290)
T 1p9a_G           10 ASHLEVNCDKRNLTALPPD--LP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD---GTLPVLGTL   82 (290)
T ss_dssp             TTCCEEECTTSCCSSCCSC--CC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC---SCCTTCCEE
T ss_pred             CCccEEECCCCCCCcCCCC--CC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC---CCCCcCCEE
Confidence            3578999999999999864  33  7899999999999999999999999999999999976543321   111122223


Q ss_pred             ccccccceeeeeeccccCCccccceeecCCCCceeeccCCCCCCCCCCCeEEecCCcceeeeccccCCCCcccEEEccCC
Q psy15407        195 YIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGN  274 (604)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~i~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N  274 (604)
                      .+..+.+..   +......+ .+|++|+|++|+|+.+++..|..+++|++|+|++|+|+.+++..|..+++|+.|+|++|
T Consensus        83 ~Ls~N~l~~---l~~~~~~l-~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N  158 (290)
T 1p9a_G           83 DLSHNQLQS---LPLLGQTL-PALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN  158 (290)
T ss_dssp             ECCSSCCSS---CCCCTTTC-TTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred             ECCCCcCCc---CchhhccC-CCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCC
Confidence            333332221   11112223 38999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccCCcccccCcccceeeeccCCCcc
Q psy15407        275 DISMIPEGAFADLHAITHLAIGGNPLY  301 (604)
Q Consensus       275 ~l~~i~~~~f~~l~~L~~L~L~~Npl~  301 (604)
                      +|+.+++.+|..+++|+.|+|++|++.
T Consensus       159 ~l~~l~~~~~~~l~~L~~L~L~~N~l~  185 (290)
T 1p9a_G          159 NLTELPAGLLNGLENLDTLLLQENSLY  185 (290)
T ss_dssp             CCSCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             cCCccCHHHhcCcCCCCEEECCCCcCC
Confidence            999999999999999999999999987

>2ygq_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling pathway, WNT antagonist, MO cancer, glycosaminoglycan; HET: PCF NAG FUC SCR; 3.95A {Homo sapiens}

Probab=99.81  E-value=1.5e-20  Score=188.56  Aligned_cols=158  Identities=35%  Similarity=0.945  Sum_probs=77.8

Q ss_pred             CCCCCCCCeeecCCCCceeeeCCCCCcCCCCcccCCCCCCCCCCCCCeeeeCCCCceEeeCCCCCcCCCCCcCCCcCCCC
Q psy15407        363 KSPCTNQGVCEPLPERQYQCRCTPGYHGQHCEFMIDACYGNPCRNSGTCKLLEEGRFNCECAPGYTGDRCEINIDDCLSH  442 (604)
Q Consensus       363 ~~~C~~~g~C~~~~~~~~~C~C~~g~~G~~c~~~~~~C~~~~C~~~~~C~~~~~~~~~C~C~~g~~g~~C~~~~~~C~~~  442 (604)
                      +++|.++|+|..    .+.|.|++||+|..|+.  +.|. .+|.++|+|..    .+.|.|++||+|..|+.  +.|. .
T Consensus       152 ~~~C~~~G~C~~----~~~C~C~~G~~G~~C~~--~~C~-~~C~~~G~C~~----~~~C~C~~G~~G~~C~~--~~C~-~  217 (324)
T 2ygq_A          152 PGGCRNGGFCNE----RRICECPDGFHGPHCEK--ALCT-PRCMNGGLCVT----PGFCICPPGFYGVNCDK--ANCS-T  217 (324)
T ss_dssp             SSCCCSSCEECT----TSCEECCTTEESSSSCE--ESSS-SCCCTTCEECS----SCCEECCTTCBTTTTCB--CCCS-S
T ss_pred             CCCCCCCCEECC----CCeEECCCCCcCCCCCC--CCCC-CCCCCCCEEcC----CCEEeCCCCccCCCccc--CcCC-C
Confidence            368999999984    37999999999999985  4576 47999999964    46899999999999984  4575 6


Q ss_pred             CCCCCcEEEeCCCCeEEecCCCCCCCCcccCCCcCCCCCCCCCCCCceeecCCCeEEecCCCCcCCcCcccCCCCCCCCC
Q psy15407        443 KCENNATCVDLIQAYECRCAPGFQGEFCQTKTPFCAGEYNPCRNGARCLDHFSHYTCECTPGFSGVNCTVNVDDCVNHMC  522 (604)
Q Consensus       443 ~C~~~~~C~~~~~~~~C~C~~g~~g~~C~~~~~~C~~~~~~C~~~~~C~~~~~~~~C~C~~g~~g~~c~~~~~~C~~~~C  522 (604)
                      +|.++|+|++   .+.|.|++||+|..|+.  +.|.   .+|.++|+|+.   .++|.|++||+|..|+.  +.|. .+|
T Consensus       218 ~C~~~G~C~~---~~~C~C~~G~~G~~C~~--~~C~---~~C~~~g~C~~---~~~C~C~~G~~G~~C~~--~~C~-~~C  283 (324)
T 2ygq_A          218 TCFNGGTCFY---PGKCICPPGLEGEQCEI--SKCP---QPCRNGGKCIG---KSKCKCSKGYQGDLCSK--PVCE-PGC  283 (324)
T ss_dssp             CCCSSCCBSC---SSCBCCCTTCCTTTTC---------------------------------------------------
T ss_pred             CCCCCCeeCC---CCeeeCCCCccCCCCCc--CcCC---CcCCCCCEECC---CCEEECCCCCcCCCCcC--CCCC-CCC
Confidence            8999999976   37899999999999974  4575   58999999974   57999999999999974  5675 579


Q ss_pred             CCCCEEeeCCCCeEeeeCCCCccCCCCcC
Q psy15407        523 QNGGTCVDGINDYTCKCEGDFVGKFCEIA  551 (604)
Q Consensus       523 ~~~~~C~~~~~~y~C~C~~G~~G~~C~~~  551 (604)
                      .++|+|++   .++|.|++||+|..|+..
T Consensus       284 ~~~g~C~~---~~~C~C~~G~~G~~C~~~  309 (324)
T 2ygq_A          284 GAHGTCHE---PNKCQCQEGWHGRHCNKR  309 (324)
T ss_dssp             -----------------------------
T ss_pred             CCCCEECC---CCEeECCCCCcCCCCCCC
Confidence            99999986   469999999999999875

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.81  E-value=2.8e-19  Score=205.15  Aligned_cols=210  Identities=23%  Similarity=0.273  Sum_probs=140.0

Q ss_pred             CCeeCCCeEEcCCCCCCcCCCCCCccCcEEecCCCcceeecCC------------------------CccCCCCCCcEEe
Q psy15407         91 GCSCDGTRVDCSQRGLKEIPKDIPLYTTELILNDNEIGKIKSD------------------------GLFGRLPNLIKLD  146 (604)
Q Consensus        91 ~C~C~~~~l~cs~~~L~~iP~~l~~~~~~L~L~~N~i~~i~~~------------------------~~f~~l~~L~~L~  146 (604)
                      .|++.+..++|++++|+.||. +|..+++|+|++|.|+.+.+.                        ..|.+|++|++|+
T Consensus         1 ~C~~~~~~~dcs~~~L~~vP~-lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~   79 (844)
T 3j0a_A            1 SCSFDGRIAFYRFCNLTQVPQ-VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILD   79 (844)
T ss_dssp             CCBTTTEEEEESCCCSSCCCS-SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEE
T ss_pred             CceEeceEEEccCCCCCCCCC-CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEE
Confidence            367777788888888888888 888888888888888766431                        2377778888888


Q ss_pred             CCCCcceecCCCcCCCcccCCcCCCCCCCCC----------ccccccEEEccCCcccc----------------cccccc
Q psy15407        147 LRRNQVTGIEDNAFEGENDQGCLGDNYCPPK----------CTCTVRVLFYDGRAGEC----------------YIAVEL  200 (604)
Q Consensus       147 Ls~N~i~~i~~~~f~~l~~L~~L~l~~~~~~----------~~~~l~~l~~~~~~~~~----------------~~~~~~  200 (604)
                      |++|+|+.+.+.+|.++.+|+.|+|++|.+.          .+..|+.+.+..+....                .+..+.
T Consensus        80 Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~  159 (844)
T 3j0a_A           80 LGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQ  159 (844)
T ss_dssp             CTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSC
T ss_pred             CCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCc
Confidence            8888888888888888888888887776432          23345555544332110                000000


Q ss_pred             ceee--------------------------ee--------------ecc-------------------------------
Q psy15407        201 FSSR--------------------------IR--------------VSY-------------------------------  209 (604)
Q Consensus       201 ~~~~--------------------------~~--------------~~~-------------------------------  209 (604)
                      +...                          ..              +..                               
T Consensus       160 i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~  239 (844)
T 3j0a_A          160 IFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILA  239 (844)
T ss_dssp             CCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECC
T ss_pred             CCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecc
Confidence            0000                          00              000                               


Q ss_pred             --------------------ccCCccccceeecCCCCceeeccCCCCCCCCCCCeEEecCCcceeeeccccCCCCcccEE
Q psy15407        210 --------------------YVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRII  269 (604)
Q Consensus       210 --------------------~~~~~~~~L~~L~Ls~N~i~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L  269 (604)
                                          +.+....+|+.|+|++|.|+.+.+..|..+++|+.|+|++|+|+.+.+.+|.++++|++|
T Consensus       240 ~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L  319 (844)
T 3j0a_A          240 HHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVL  319 (844)
T ss_dssp             SSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEE
T ss_pred             cccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEE
Confidence                                000001357777777777777777778888888888888888888877788888888888


Q ss_pred             EccCCccccCCcccccCcccceeeeccCCCcc
Q psy15407        270 SLHGNDISMIPEGAFADLHAITHLAIGGNPLY  301 (604)
Q Consensus       270 ~Ls~N~l~~i~~~~f~~l~~L~~L~L~~Npl~  301 (604)
                      +|++|+|+.+.+..|..+++|+.|+|++|.+.
T Consensus       320 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~  351 (844)
T 3j0a_A          320 NLSYNLLGELYSSNFYGLPKVAYIDLQKNHIA  351 (844)
T ss_dssp             EEESCCCSCCCSCSCSSCTTCCEEECCSCCCC
T ss_pred             ECCCCCCCccCHHHhcCCCCCCEEECCCCCCC
Confidence            88888887777777777777777777777663

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.81  E-value=4.6e-20  Score=187.73  Aligned_cols=198  Identities=13%  Similarity=0.086  Sum_probs=140.7

Q ss_pred             CCeEEcCCCCCCcCCCCCC--ccCcEEecCCCcceeecCCCccCCCCCCcEEeCCCCcceecCCCcCCCcccCCcCCCCC
Q psy15407         96 GTRVDCSQRGLKEIPKDIP--LYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDNY  173 (604)
Q Consensus        96 ~~~l~cs~~~L~~iP~~l~--~~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~l~~  173 (604)
                      .+.|++++++|+.||..+.  ..+++|+|++|.|+.||..  |..+++|++|+|++|+|+.|+ ..|..+++|+.|++++
T Consensus        83 l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~--~~~l~~L~~L~Ls~n~l~~lp-~~l~~l~~L~~L~L~~  159 (328)
T 4fcg_A           83 RVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDT--MQQFAGLETLTLARNPLRALP-ASIASLNRLRELSIRA  159 (328)
T ss_dssp             CCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSC--GGGGTTCSEEEEESCCCCCCC-GGGGGCTTCCEEEEEE
T ss_pred             eeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHH--HhccCCCCEEECCCCccccCc-HHHhcCcCCCEEECCC
Confidence            3689999999999998874  5779999999999988764  899999999999999999874 5689999999999988


Q ss_pred             CCCCc-ccc-ccE------EEccCCccccccccccceeeeeeccccCCccccceeecCCCCceeeccCCCCCCCCCCCeE
Q psy15407        174 CPPKC-TCT-VRV------LFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQL  245 (604)
Q Consensus       174 ~~~~~-~~~-l~~------l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~i~~l~~~~f~~l~~L~~L  245 (604)
                      |.... ++. +..      +.-...+..+.+..+.+.   .+......++ +|++|+|++|+|+.+++ .|..+++|++|
T Consensus       160 n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~---~lp~~l~~l~-~L~~L~L~~N~l~~l~~-~l~~l~~L~~L  234 (328)
T 4fcg_A          160 CPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR---SLPASIANLQ-NLKSLKIRNSPLSALGP-AIHHLPKLEEL  234 (328)
T ss_dssp             ETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC---CCCGGGGGCT-TCCEEEEESSCCCCCCG-GGGGCTTCCEE
T ss_pred             CCCccccChhHhhccchhhhccCCCCCEEECcCCCcC---cchHhhcCCC-CCCEEEccCCCCCcCch-hhccCCCCCEE
Confidence            64221 111 000      001112222222222222   1111112222 78888888888887766 47778888888


Q ss_pred             EecCCcceeeeccccCCCCcccEEEccCCccccCCcccccCcccceeeeccCCCcc
Q psy15407        246 ILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIGGNPLY  301 (604)
Q Consensus       246 ~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~Npl~  301 (604)
                      +|++|++....+..|..+++|++|+|++|++....+..|..+++|+.|+|++|++.
T Consensus       235 ~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~  290 (328)
T 4fcg_A          235 DLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNL  290 (328)
T ss_dssp             ECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTC
T ss_pred             ECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCch
Confidence            88888877777778888888888888887766555556778888888888887764

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.81  E-value=7.4e-20  Score=205.31  Aligned_cols=182  Identities=21%  Similarity=0.247  Sum_probs=158.4

Q ss_pred             CCeeCCCeEEcCCCCCCcCCCCCCccCcEEecCCCcceeecCCCccCCCCCCcEEeCCCCcceecCCCcCCCcccCCcCC
Q psy15407         91 GCSCDGTRVDCSQRGLKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLG  170 (604)
Q Consensus        91 ~C~C~~~~l~cs~~~L~~iP~~l~~~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~  170 (604)
                      .|.|.++.|+|++++|++||..+|..+++|+|++|.|+.+++. .|.++++|++|+|++|.|+.+.+.+|.++++|+.|+
T Consensus         1 ~C~~~~~~~~cs~~~L~~ip~~~~~~l~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~   79 (680)
T 1ziw_A            1 KCTVSHEVADCSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAA-NFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLN   79 (680)
T ss_dssp             ---CBSSEEECCSSCCSSCCSCSCTTCSEEECCSSCCCCCCGG-GGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEE
T ss_pred             CceeECCeeECCCCCccccccccCCCCcEEECCCCCCCCcCHH-HHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEE
Confidence            3788889999999999999999999999999999999999874 499999999999999999999999999999999999


Q ss_pred             CCCCCCCccccccEEEccCCccccccccccceeeeeeccccCCccccceeecCCCCceeeccCCCCCCCCCCCeEEecCC
Q psy15407        171 DNYCPPKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYN  250 (604)
Q Consensus       171 l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~i~~l~~~~f~~l~~L~~L~Ls~N  250 (604)
                      |++|.+..+..                           ..... ..+|++|+|++|+|+.+++..|..+++|++|+|++|
T Consensus        80 L~~n~l~~l~~---------------------------~~~~~-l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n  131 (680)
T 1ziw_A           80 LQHNELSQLSD---------------------------KTFAF-CTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHN  131 (680)
T ss_dssp             CCSSCCCCCCT---------------------------TTTTT-CTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSS
T ss_pred             CCCCccCccCh---------------------------hhhcc-CCCCCEEECCCCccCccChhHccccCCCCEEECCCC
Confidence            99875432110                           00111 238999999999999999999999999999999999


Q ss_pred             cceeeeccccCCCCcccEEEccCCccccCCccccc--CcccceeeeccCCCcc
Q psy15407        251 KLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFA--DLHAITHLAIGGNPLY  301 (604)
Q Consensus       251 ~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~--~l~~L~~L~L~~Npl~  301 (604)
                      +|+.+.+..|..+++|++|+|++|+|+.+++..|.  .+++|+.|+|++|.+.
T Consensus       132 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~  184 (680)
T 1ziw_A          132 GLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIK  184 (680)
T ss_dssp             CCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCC
T ss_pred             cccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCccc
Confidence            99999999999999999999999999999887665  4588999999999875

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.80  E-value=8.3e-20  Score=199.58  Aligned_cols=198  Identities=19%  Similarity=0.226  Sum_probs=141.2

Q ss_pred             CCCCCCeeCCCeEEcCCCCCCcCCCCCCccCcEEecCCCcceeecCCCccCCCCCCcEEeCCCCcceecCCCcCCCcccC
Q psy15407         87 ACPSGCSCDGTRVDCSQRGLKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQ  166 (604)
Q Consensus        87 ~CP~~C~C~~~~l~cs~~~L~~iP~~l~~~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L  166 (604)
                      .||..|.|     ++++++|++||..++..+++|+|++|+|+.+++. .|.++++|++|+|++|+|+.+++.+|.++.+|
T Consensus         3 ~C~~~~~c-----~~~~~~l~~ip~~~~~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L   76 (549)
T 2z81_A            3 SCDASGVC-----DGRSRSFTSIPSGLTAAMKSLDLSFNKITYIGHG-DLRACANLQVLILKSSRINTIEGDAFYSLGSL   76 (549)
T ss_dssp             EECTTSEE-----ECTTSCCSSCCSCCCTTCCEEECCSSCCCEECSS-TTSSCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred             cCCCCceE-----ECCCCccccccccCCCCccEEECcCCccCccChh-hhhcCCcccEEECCCCCcCccChhhccccccC
Confidence            46777665     7889999999999999999999999999999764 49999999999999999999999999999999


Q ss_pred             CcCCCCCCCCCcc--------ccccEEEccCCccccccccccceeeeeeccccCCccccceeecCCCCc-eeeccCCCCC
Q psy15407        167 GCLGDNYCPPKCT--------CTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQ-IGFLSNFTFS  237 (604)
Q Consensus       167 ~~L~l~~~~~~~~--------~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~-i~~l~~~~f~  237 (604)
                      +.|++++|.+...        ..++.+.+..+...         .. ......... .+|++|+|++|. +..+++..|.
T Consensus        77 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~---------~~-~~~~~~~~l-~~L~~L~L~~n~~~~~~~~~~~~  145 (549)
T 2z81_A           77 EHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQ---------TL-GVTSLFPNL-TNLQTLRIGNVETFSEIRRIDFA  145 (549)
T ss_dssp             CEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCS---------SS-CSSCSCTTC-TTCCEEEEEESSSCCEECTTTTT
T ss_pred             CEEECCCCccCccCHHHhccCCCCcEEECCCCccc---------cc-chhhhhhcc-CCccEEECCCCccccccCHhhhh
Confidence            9999999865432        23344444333211         10 000011111 266677777776 5666666677


Q ss_pred             CCCCCCeEEecCCcceeeeccccCCCCcccEEEccCCccccCCcccccCcccceeeeccCCCcc
Q psy15407        238 PLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIGGNPLY  301 (604)
Q Consensus       238 ~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~Npl~  301 (604)
                      .+++|++|+|++|+|+.+.+..|..+++|++|+|+.|.+..++...+..+++|+.|+|++|.+.
T Consensus       146 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~  209 (549)
T 2z81_A          146 GLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLA  209 (549)
T ss_dssp             TCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCT
T ss_pred             cccccCeeeccCCcccccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccc
Confidence            7777777777777777766666666666666666666666666555555666777777776654

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.80  E-value=2.8e-19  Score=193.77  Aligned_cols=181  Identities=18%  Similarity=0.219  Sum_probs=134.9

Q ss_pred             CCee-CCCeEEcCCCCCCcCCCCCCccCcEEecCCCcceeecCCCccCCCCCCcEEeCCCCcceecCCCcCCCcccCCcC
Q psy15407         91 GCSC-DGTRVDCSQRGLKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCL  169 (604)
Q Consensus        91 ~C~C-~~~~l~cs~~~L~~iP~~l~~~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L  169 (604)
                      .|.+ ..+.|++++++|+.||..++..+++|+|++|.|+.|| .    .+++|++|+|++|+|+.|+.  |..  +|+.|
T Consensus        55 ~C~~~~L~~L~Ls~n~L~~lp~~l~~~L~~L~Ls~N~l~~ip-~----~l~~L~~L~Ls~N~l~~ip~--l~~--~L~~L  125 (571)
T 3cvr_A           55 ECLINQFSELQLNRLNLSSLPDNLPPQITVLEITQNALISLP-E----LPASLEYLDACDNRLSTLPE--LPA--SLKHL  125 (571)
T ss_dssp             HHHHTTCSEEECCSSCCSCCCSCCCTTCSEEECCSSCCSCCC-C----CCTTCCEEECCSSCCSCCCC--CCT--TCCEE
T ss_pred             ccccCCccEEEeCCCCCCccCHhHcCCCCEEECcCCCCcccc-c----ccCCCCEEEccCCCCCCcch--hhc--CCCEE
Confidence            3444 3578999999999999988888999999999999887 2    36899999999999999877  554  89999


Q ss_pred             CCCCCCCCccccccEEEccCCccccccccccceeeeeeccccCCccccceeecCCCCceeeccCCCCCCCCCCCeEEecC
Q psy15407        170 GDNYCPPKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSY  249 (604)
Q Consensus       170 ~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~i~~l~~~~f~~l~~L~~L~Ls~  249 (604)
                      +|++|.+..++.     ....+..+.+..+.+....      . ...+|++|+|++|+|+.++.  |.  ++|+.|+|++
T Consensus       126 ~Ls~N~l~~lp~-----~l~~L~~L~Ls~N~l~~lp------~-~l~~L~~L~Ls~N~L~~lp~--l~--~~L~~L~Ls~  189 (571)
T 3cvr_A          126 DVDNNQLTMLPE-----LPALLEYINADNNQLTMLP------E-LPTSLEVLSVRNNQLTFLPE--LP--ESLEALDVST  189 (571)
T ss_dssp             ECCSSCCSCCCC-----CCTTCCEEECCSSCCSCCC------C-CCTTCCEEECCSSCCSCCCC--CC--TTCCEEECCS
T ss_pred             ECCCCcCCCCCC-----cCccccEEeCCCCccCcCC------C-cCCCcCEEECCCCCCCCcch--hh--CCCCEEECcC
Confidence            999987665443     1122333333333332211      1 23488899999999988776  55  8899999999


Q ss_pred             CcceeeeccccCCCCcc-------cEEEccCCccccCCcccccCcccceeeeccCCCcc
Q psy15407        250 NKLQCIDRDALAGLKSL-------RIISLHGNDISMIPEGAFADLHAITHLAIGGNPLY  301 (604)
Q Consensus       250 N~l~~i~~~~f~~l~~L-------~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~Npl~  301 (604)
                      |+|+.|+.  |..  +|       +.|+|++|+|+.||..++. +++|+.|+|++|+|.
T Consensus       190 N~L~~lp~--~~~--~L~~~~~~L~~L~Ls~N~l~~lp~~l~~-l~~L~~L~L~~N~l~  243 (571)
T 3cvr_A          190 NLLESLPA--VPV--RNHHSEETEIFFRCRENRITHIPENILS-LDPTCTIILEDNPLS  243 (571)
T ss_dssp             SCCSSCCC--CC----------CCEEEECCSSCCCCCCGGGGG-SCTTEEEECCSSSCC
T ss_pred             CCCCchhh--HHH--hhhcccccceEEecCCCcceecCHHHhc-CCCCCEEEeeCCcCC
Confidence            99998865  443  66       8999999999998886555 888999999888885

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.79  E-value=2.8e-20  Score=188.08  Aligned_cols=189  Identities=17%  Similarity=0.156  Sum_probs=145.9

Q ss_pred             CCeEEcCCCCCC-cCCCCC----CccCcEEecCCCcceeecCCCccCCC-----CCCcEEeCCCCcceecCCCcCCCccc
Q psy15407         96 GTRVDCSQRGLK-EIPKDI----PLYTTELILNDNEIGKIKSDGLFGRL-----PNLIKLDLRRNQVTGIEDNAFEGEND  165 (604)
Q Consensus        96 ~~~l~cs~~~L~-~iP~~l----~~~~~~L~L~~N~i~~i~~~~~f~~l-----~~L~~L~Ls~N~i~~i~~~~f~~l~~  165 (604)
                      -+.|++++|+|+ .+|..+    ...+++|+|++|+|+.++.  .|..+     ++|++|+|++|+|+.+++..|..+++
T Consensus        97 L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~  174 (312)
T 1wwl_A           97 LQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDA--WLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPA  174 (312)
T ss_dssp             CCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSS--HHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSS
T ss_pred             ccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhH--HHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCC
Confidence            378999999998 688765    4567999999999998843  37776     99999999999999999999999999


Q ss_pred             CCcCCCCCCCCC------------ccccccEEEccCCccccccccccceeeeeec-cccCCccccceeecCCCCceeecc
Q psy15407        166 QGCLGDNYCPPK------------CTCTVRVLFYDGRAGECYIAVELFSSRIRVS-YYVGNYPVSTMYRDLSNNQIGFLS  232 (604)
Q Consensus       166 L~~L~l~~~~~~------------~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~L~~L~Ls~N~i~~l~  232 (604)
                      |+.|++++|.+.            .+..++.+.+..+.         +.....+. .+.... .+|++|+|++|+|+.+.
T Consensus       175 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~---------l~~~~~~~~~~~~~l-~~L~~L~Ls~N~l~~~~  244 (312)
T 1wwl_A          175 LSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAG---------METPSGVCSALAAAR-VQLQGLDLSHNSLRDAA  244 (312)
T ss_dssp             CCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSC---------CCCHHHHHHHHHHTT-CCCSEEECTTSCCCSSC
T ss_pred             CCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCc---------CcchHHHHHHHHhcC-CCCCEEECCCCcCCccc
Confidence            999999998742            22334444444332         22111111 011111 38999999999999876


Q ss_pred             C-CCCCCCCCCCeEEecCCcceeeeccccCCCCcccEEEccCCccccCCcccccCcccceeeeccCCCcc
Q psy15407        233 N-FTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIGGNPLY  301 (604)
Q Consensus       233 ~-~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~Npl~  301 (604)
                      + ..+..+++|++|+|++|+|+.++...+   ++|++|+|++|+|+.+|.  |..+++|+.|+|++|+|.
T Consensus       245 ~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~---~~L~~L~Ls~N~l~~~p~--~~~l~~L~~L~L~~N~l~  309 (312)
T 1wwl_A          245 GAPSCDWPSQLNSLNLSFTGLKQVPKGLP---AKLSVLDLSYNRLDRNPS--PDELPQVGNLSLKGNPFL  309 (312)
T ss_dssp             CCSCCCCCTTCCEEECTTSCCSSCCSSCC---SEEEEEECCSSCCCSCCC--TTTSCEEEEEECTTCTTT
T ss_pred             chhhhhhcCCCCEEECCCCccChhhhhcc---CCceEEECCCCCCCCChh--HhhCCCCCEEeccCCCCC
Confidence            3 567788999999999999998865444   899999999999999965  889999999999999985

>4d90_A EGF-like repeat and discoidin I-like domain-conta protein 3; RGD finger, cell adhesion, innate immunity, extracellular MA protein; HET: NGA NAG FUC; 2.60A {Homo sapiens}

Probab=99.79  E-value=2.2e-19  Score=159.20  Aligned_cols=126  Identities=40%  Similarity=0.970  Sum_probs=88.0

Q ss_pred             CCCCCCCCCCCCeeeeCCC-CceEeeCCCCCcCCCCCcCCCcCCCCCCCCCcEEEeCCCCeEEecCCCCCCCCcccCCCc
Q psy15407        398 DACYGNPCRNSGTCKLLEE-GRFNCECAPGYTGDRCEINIDDCLSHKCENNATCVDLIQAYECRCAPGFQGEFCQTKTPF  476 (604)
Q Consensus       398 ~~C~~~~C~~~~~C~~~~~-~~~~C~C~~g~~g~~C~~~~~~C~~~~C~~~~~C~~~~~~~~C~C~~g~~g~~C~~~~~~  476 (604)
                      |+|..+||.++++|..... ++|.|.|++||+|..|+. +.++...                        +..| ..+++
T Consensus         1 d~C~~~pC~~~g~C~~~~~~g~~~C~C~~G~~G~~C~~-~~~~~~~------------------------~~~c-~~~~~   54 (143)
T 4d90_A            1 DICDPNPCENGGICLPGLADGSFSCECPDGFTDPNCSS-VVEVASD------------------------EEEP-TSAGP   54 (143)
T ss_dssp             --CCSCCCGGGCEEEC-----CCEEECCTTCCTTTTCS-CCCCTTT------------------------TTSC-CCCCT
T ss_pred             CcCCCCcCCCCCEeeCCCCCCCEEeECCCCCCCCCCcc-Ccccccc------------------------cccc-ccCCc
Confidence            3555666666666654322 456666666666666652 1111110                        0011 13455


Q ss_pred             CCCCCCCCCCCCcee-------ecCCCeEEecCCCCcCCcCcccCCCCCCCCCCCCCEEeeCCCCeEeeeCCCCccCCCC
Q psy15407        477 CAGEYNPCRNGARCL-------DHFSHYTCECTPGFSGVNCTVNVDDCVNHMCQNGGTCVDGINDYTCKCEGDFVGKFCE  549 (604)
Q Consensus       477 C~~~~~~C~~~~~C~-------~~~~~~~C~C~~g~~g~~c~~~~~~C~~~~C~~~~~C~~~~~~y~C~C~~G~~G~~C~  549 (604)
                      |..  ++|.++++|+       +..++|+|.|++||+|..|+.++++|..++|.++++|++..++|+|.|++||+|+.|+
T Consensus        55 C~~--~~C~~~g~C~~~~~~~~~~~~~~~C~C~~G~~G~~C~~~i~~C~~~~C~~~~~C~~~~g~~~C~C~~G~~G~~c~  132 (143)
T 4d90_A           55 CTP--NPCHNGGTCEISEAYRGDTFIGYVCKCPRGFNGIHCQHNINECEVEPCKNGGICTDLVANYSCECPGEFMGRNCQ  132 (143)
T ss_dssp             TSS--CCCCTTCEEEECCCEETTEECCEEEECCTTEESTTSCEECCTTTTCCSCTTCEEEEETTEEEEECCTTCBSTTSC
T ss_pred             CCC--CCCCCCCEecCCCccccCCCCCeEeECcCCCcCCCcccCCCcCCCCCCCCCCEeECCCCCeEeECCCCCccCCce
Confidence            653  5788889998       6668999999999999999889999999999999999999999999999999999998


Q ss_pred             cC
Q psy15407        550 IA  551 (604)
Q Consensus       550 ~~  551 (604)
                      ..
T Consensus       133 ~~  134 (143)
T 4d90_A          133 YK  134 (143)
T ss_dssp             BC
T ss_pred             ec
Confidence            64

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.79  E-value=9.6e-20  Score=184.58  Aligned_cols=93  Identities=23%  Similarity=0.260  Sum_probs=82.4

Q ss_pred             ccceeecCCCCceeeccCCCCCCCCCCCeEEecCCcceeeeccccCCCCcccEEEccCCccccCCcccccCcccceeeec
Q psy15407        216 VSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAI  295 (604)
Q Consensus       216 ~~L~~L~Ls~N~i~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L  295 (604)
                      .+|++|+|++|.|+.++...  .+++|++|+|++|+|+.+++. |..+++|+.|+|++|+|+.+|.. |..+++|+.|+|
T Consensus       169 ~~L~~L~L~~N~l~~~~~~~--~l~~L~~L~Ls~N~l~~l~~~-~~~l~~L~~L~L~~N~l~~l~~~-~~~l~~L~~L~l  244 (317)
T 3o53_A          169 DTLEHLNLQYNFIYDVKGQV--VFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVLIEKA-LRFSQNLEHFDL  244 (317)
T ss_dssp             TTCCEEECTTSCCCEEECCC--CCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCCEECTT-CCCCTTCCEEEC
T ss_pred             CcCCEEECCCCcCccccccc--ccccCCEEECCCCcCCcchhh-hcccCcccEEECcCCcccchhhH-hhcCCCCCEEEc
Confidence            38999999999999997644  489999999999999999765 88999999999999999999874 788999999999


Q ss_pred             cCCCcccccCCCccccc
Q psy15407        296 GGNPLYCDCGLAWLSEW  312 (604)
Q Consensus       296 ~~Npl~CdC~l~~l~~~  312 (604)
                      ++|+|.|++...|+..+
T Consensus       245 ~~N~~~~~~~~~~~~~~  261 (317)
T 3o53_A          245 RGNGFHCGTLRDFFSKN  261 (317)
T ss_dssp             TTCCCBHHHHHHHHHTC
T ss_pred             cCCCccCcCHHHHHhcc
Confidence            99999999776666543

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.79  E-value=1.2e-19  Score=183.57  Aligned_cols=202  Identities=15%  Similarity=0.128  Sum_probs=147.7

Q ss_pred             CeEEcCC-CCCC-cCCCCC--CccCcEEecCCCcceeecCCCccCCCCCCcEEeCCCCcceecCCCcCCCcccCCcCCCC
Q psy15407         97 TRVDCSQ-RGLK-EIPKDI--PLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDN  172 (604)
Q Consensus        97 ~~l~cs~-~~L~-~iP~~l--~~~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~l~  172 (604)
                      +.|++++ ++++ .+|..+  ...+++|+|++|.|+...+. .|.++++|++|+|++|+|+.+.+..|..+++|+.|+++
T Consensus        79 ~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~  157 (313)
T 1ogq_A           79 NFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPD-FLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFD  157 (313)
T ss_dssp             SEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCG-GGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECC
T ss_pred             CeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCH-HHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECc
Confidence            6788884 7776 667665  35668888888888744332 37888888888888888887777778888888888888


Q ss_pred             CCCCC--------ccc-cccEEEccCCccccccc--------------cccceeeeeeccccCCccccceeecCCCCcee
Q psy15407        173 YCPPK--------CTC-TVRVLFYDGRAGECYIA--------------VELFSSRIRVSYYVGNYPVSTMYRDLSNNQIG  229 (604)
Q Consensus       173 ~~~~~--------~~~-~l~~l~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~i~  229 (604)
                      +|.+.        ... .++.+.+..+.....++              .+.+..  ......... .+|++|+|++|+|+
T Consensus       158 ~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~L~~L~Ls~N~l~~--~~~~~~~~l-~~L~~L~L~~N~l~  234 (313)
T 1ogq_A          158 GNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEG--DASVLFGSD-KNTQKIHLAKNSLA  234 (313)
T ss_dssp             SSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEE--CCGGGCCTT-SCCSEEECCSSEEC
T ss_pred             CCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCcccEEECcCCcccC--cCCHHHhcC-CCCCEEECCCCcee
Confidence            87643        112 55666666554331111              111111  011112222 38999999999999


Q ss_pred             eccCCCCCCCCCCCeEEecCCcceeeeccccCCCCcccEEEccCCccccCCcccccCcccceeeeccCCCccccc
Q psy15407        230 FLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIGGNPLYCDC  304 (604)
Q Consensus       230 ~l~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~Npl~CdC  304 (604)
                      ...+. |..+++|++|+|++|+|+...+..|..+++|++|+|++|+|+...+.. ..+++|+.|+|++||+.|.-
T Consensus       235 ~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~~  307 (313)
T 1ogq_A          235 FDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCGS  307 (313)
T ss_dssp             CBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEEST
T ss_pred             eecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCccCC
Confidence            77664 888999999999999999888899999999999999999999444433 78999999999999998864

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.78  E-value=1.3e-18  Score=181.66  Aligned_cols=201  Identities=17%  Similarity=0.184  Sum_probs=144.8

Q ss_pred             CeEEcCCCCCCcCCCC-C--CccCcEEecCCCcceeecCCCccCCCCCCcEEeCCCCcceecCCCcCCCcccCCcCCCCC
Q psy15407         97 TRVDCSQRGLKEIPKD-I--PLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDNY  173 (604)
Q Consensus        97 ~~l~cs~~~L~~iP~~-l--~~~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~l~~  173 (604)
                      +.|+++++.|+.+|.. +  ...+++|+|++|.|+.+++. +|.++++|++|+|++|+|+.+++..|..+++|+.|++++
T Consensus        72 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~  150 (390)
T 3o6n_A           72 ELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPH-VFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSN  150 (390)
T ss_dssp             SEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTT-TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             cEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHH-HhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCC
Confidence            7899999999988763 3  45679999999999998764 489999999999999999999999999999999999998


Q ss_pred             CCCC--------ccccccEEEccCCccccc------------cccccceee-------------eeeccccCCcccccee
Q psy15407        174 CPPK--------CTCTVRVLFYDGRAGECY------------IAVELFSSR-------------IRVSYYVGNYPVSTMY  220 (604)
Q Consensus       174 ~~~~--------~~~~l~~l~~~~~~~~~~------------~~~~~~~~~-------------~~~~~~~~~~~~~L~~  220 (604)
                      |.+.        ....++.+.+..+.....            +..+.+...             ..+..+......+|+.
T Consensus       151 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~  230 (390)
T 3o6n_A          151 NNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTI  230 (390)
T ss_dssp             SCCCBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECCCCSSCCE
T ss_pred             CccCccChhhccCCCCCCEEECCCCcCCccccccccccceeecccccccccCCCCcceEEECCCCeeeeccccccccccE
Confidence            8533        345667777765533211            111111000             0011111122235666


Q ss_pred             ecCCCCceeeccCCCCCCCCCCCeEEecCCcceeeeccccCCCCcccEEEccCCccccCCcccccCcccceeeeccCCCc
Q psy15407        221 RDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIGGNPL  300 (604)
Q Consensus       221 L~Ls~N~i~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~Npl  300 (604)
                      |+|++|.|+.++  .|..+++|++|+|++|+|+.+.+..|..+++|+.|+|++|+|+.++.. +..+++|+.|+|++|++
T Consensus       231 L~l~~n~l~~~~--~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~l~~L~~L~L~~n~l  307 (390)
T 3o6n_A          231 LKLQHNNLTDTA--WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLY-GQPIPTLKVLDLSHNHL  307 (390)
T ss_dssp             EECCSSCCCCCG--GGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEEECS-SSCCTTCCEEECCSSCC
T ss_pred             EECCCCCCcccH--HHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcccCcc-cCCCCCCCEEECCCCcc
Confidence            666666666652  567778888888888888888888888888888888888888887663 56778888888888877


Q ss_pred             c
Q psy15407        301 Y  301 (604)
Q Consensus       301 ~  301 (604)
                      .
T Consensus       308 ~  308 (390)
T 3o6n_A          308 L  308 (390)
T ss_dssp             C
T ss_pred             e
Confidence            5

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.78  E-value=5.4e-19  Score=178.16  Aligned_cols=186  Identities=20%  Similarity=0.238  Sum_probs=137.2

Q ss_pred             CeEEcCCCCCCcCCCCC--CccCcEEecCCCcceeecCCCccCCCCCCcEEeCCCCcceecCCCcCCCcccCCcCCCCCC
Q psy15407         97 TRVDCSQRGLKEIPKDI--PLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDNYC  174 (604)
Q Consensus        97 ~~l~cs~~~L~~iP~~l--~~~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~l~~~  174 (604)
                      +.|++++++++.+|. +  ...+++|+|++|.|+.+++   |..+++|++|+|++|+|+.++  .|..+++|+.|++++|
T Consensus        44 ~~L~l~~~~i~~l~~-~~~l~~L~~L~L~~n~i~~~~~---~~~l~~L~~L~L~~n~l~~~~--~~~~l~~L~~L~l~~n  117 (308)
T 1h6u_A           44 TTLSAFGTGVTTIEG-VQYLNNLIGLELKDNQITDLAP---LKNLTKITELELSGNPLKNVS--AIAGLQSIKTLDLTST  117 (308)
T ss_dssp             CEEECTTSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG---GTTCCSCCEEECCSCCCSCCG--GGTTCTTCCEEECTTS
T ss_pred             CEEEeeCCCccCchh-hhccCCCCEEEccCCcCCCChh---HccCCCCCEEEccCCcCCCch--hhcCCCCCCEEECCCC
Confidence            678888888887773 4  4567888888888887764   778888888888888888774  5777888888888877


Q ss_pred             CCCccccccEEEccCCccccccccccceeeeeeccccCCccccceeecCCCCceeeccCCCCCCCCCCCeEEecCCccee
Q psy15407        175 PPKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQC  254 (604)
Q Consensus       175 ~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~i~~l~~~~f~~l~~L~~L~Ls~N~l~~  254 (604)
                      .+..+..+   ....++..+.+..+.+.....+    ..+ .+|++|+|++|+|+.+++  |..+++|+.|+|++|+|+.
T Consensus       118 ~l~~~~~l---~~l~~L~~L~l~~n~l~~~~~l----~~l-~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~  187 (308)
T 1h6u_A          118 QITDVTPL---AGLSNLQVLYLDLNQITNISPL----AGL-TNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISD  187 (308)
T ss_dssp             CCCCCGGG---TTCTTCCEEECCSSCCCCCGGG----GGC-TTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC
T ss_pred             CCCCchhh---cCCCCCCEEECCCCccCcCccc----cCC-CCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccCc
Confidence            65443221   1111222222222222222111    112 389999999999999876  8899999999999999999


Q ss_pred             eeccccCCCCcccEEEccCCccccCCcccccCcccceeeeccCCCccc
Q psy15407        255 IDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIGGNPLYC  302 (604)
Q Consensus       255 i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~Npl~C  302 (604)
                      +++  |..+++|++|+|++|+|+.+++  |..+++|+.|+|++|+|..
T Consensus       188 ~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~  231 (308)
T 1h6u_A          188 ISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITN  231 (308)
T ss_dssp             CGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEEC
T ss_pred             Chh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeeec
Confidence            865  8889999999999999999885  7889999999999999964

>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell adhesion, DI mutation, glycoprotein, HOST-virus interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo sapiens} PDB: 4g1e_B* 3ije_B* 4g1m_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B*

Probab=99.78  E-value=4.8e-19  Score=192.76  Aligned_cols=166  Identities=28%  Similarity=0.687  Sum_probs=78.7

Q ss_pred             CCcCCCCCCCCeeecCCCCcee---eeCCCCCcCCCCcccC--------CCCCCCC----CCCCCeeeeCCCCceEeeCC
Q psy15407        360 ACYKSPCTNQGVCEPLPERQYQ---CRCTPGYHGQHCEFMI--------DACYGNP----CRNSGTCKLLEEGRFNCECA  424 (604)
Q Consensus       360 ~C~~~~C~~~g~C~~~~~~~~~---C~C~~g~~G~~c~~~~--------~~C~~~~----C~~~~~C~~~~~~~~~C~C~  424 (604)
                      +|...||.++++|.+.. |.+.   |.|++||+|..|+.++        ++|...+    |.++|+|.     .+.|.|+
T Consensus       436 ~C~~~pc~n~~~C~~g~-G~~~~G~C~C~~Gy~G~~Ce~~~~~~~~~~~~~C~~~~~~~~Cs~~G~C~-----~g~C~C~  509 (690)
T 3fcs_B          436 ACQAQAEPNSHRCNNGN-GTFECGVCRCGPGWLGSQCECSEEDYRPSQQDECSPREGQPVCSQRGECL-----CGQCVCH  509 (690)
T ss_dssp             GGGTTCCTTCTTTTTTS-EEEETTEEEECTTCCSSSSCCSCC------CCCCSSSSSSCGGGGSEEEC-----SSSEEEC
T ss_pred             CCcCCCCCCCCcccCCC-CeEeCCceEeCCCccCCceeeccCccCCccCCcCCCCCCCCCCCCCCEEE-----CCeeEee
Confidence            45555555555554432 4444   5555555555555443        3444432    44455553     1345555


Q ss_pred             ----CCCcCCCCCcCCCcCCC---CCCCCCcEEEeCCCCeEEecCCCCCCCCcc--cCCCcCCCCC-CCCCCCCceeecC
Q psy15407        425 ----PGYTGDRCEINIDDCLS---HKCENNATCVDLIQAYECRCAPGFQGEFCQ--TKTPFCAGEY-NPCRNGARCLDHF  494 (604)
Q Consensus       425 ----~g~~g~~C~~~~~~C~~---~~C~~~~~C~~~~~~~~C~C~~g~~g~~C~--~~~~~C~~~~-~~C~~~~~C~~~~  494 (604)
                          +||.|..|+.++++|..   .+|.++|+|++    +.|.|.+||+|..|+  ...+.|.... .+|.++|+|++  
T Consensus       510 ~~~~~Gy~G~~Ce~~~~~C~~~~~~~C~~~G~C~~----g~C~C~~Gy~G~~CeC~~~~~~C~~~~g~~C~~~G~C~~--  583 (690)
T 3fcs_B          510 SSDFGKITGKYCECDDFSCVRYKGEMCSGHGQCSC----GDCLCDSDWTGYYCNCTTRTDTCMSSNGLLCSGRGKCEC--  583 (690)
T ss_dssp             CCSSCCCBSTTSCBCSSCCCBSSSSBGGGSEEEET----TEEEECTTEESSSSCEECCCTTTBCTTSSBTSSSCEEET--
T ss_pred             cCCCCCeeCCCcCcccCcCcCCCCCCCCCCCEecC----CeeECcCCCcCCCCccCCCCCcccCCCCCCCCCCCEEeC--
Confidence                55555555544445543   24555555543    555555555555554  3344444321 34555555533  


Q ss_pred             CCeEEec-CCCCcCCcCcccCCCCCCCCCCCCCEEeeCCCCeEeeeCCCCccCCCC
Q psy15407        495 SHYTCEC-TPGFSGVNCTVNVDDCVNHMCQNGGTCVDGINDYTCKCEGDFVGKFCE  549 (604)
Q Consensus       495 ~~~~C~C-~~g~~g~~c~~~~~~C~~~~C~~~~~C~~~~~~y~C~C~~G~~G~~C~  549 (604)
                        .+|.| .+||+|..|+. ...| ..+|.+++.|++        |..||+|..|+
T Consensus       584 --g~C~C~~~Gy~G~~Ce~-C~~C-~~~C~~~g~Cv~--------C~~g~tG~~C~  627 (690)
T 3fcs_B          584 --GSCVCIQPGSYGDTCEK-CPTC-PDACTFKKECVE--------CKKFDRGALHD  627 (690)
T ss_dssp             --TEEECCSTTCBSTTSCB-CTTS-CCTTTSCCGGGT--------TTTTCCSSSSS
T ss_pred             --CEEECCCCCccCCCcCc-CCCC-CCCCCCCCCccc--------CCCCCccCCCC
Confidence              14555 55555555542 1223 234555444443        55555555444

>4d90_A EGF-like repeat and discoidin I-like domain-conta protein 3; RGD finger, cell adhesion, innate immunity, extracellular MA protein; HET: NGA NAG FUC; 2.60A {Homo sapiens}

Probab=99.78  E-value=5.8e-19  Score=156.50  Aligned_cols=114  Identities=34%  Similarity=0.910  Sum_probs=80.9

Q ss_pred             CCCcCCCCCCCCeeecCCC-CceeeeCCCCCcCCCCcc------------cCCCCCCCCCCCCCeeeeC------CCCce
Q psy15407        359 NACYKSPCTNQGVCEPLPE-RQYQCRCTPGYHGQHCEF------------MIDACYGNPCRNSGTCKLL------EEGRF  419 (604)
Q Consensus       359 ~~C~~~~C~~~g~C~~~~~-~~~~C~C~~g~~G~~c~~------------~~~~C~~~~C~~~~~C~~~------~~~~~  419 (604)
                      ++|..+||.++|+|++... +.|+|.|++||+|..|+.            ++++|..+||.++++|...      ..++|
T Consensus         1 d~C~~~pC~~~g~C~~~~~~g~~~C~C~~G~~G~~C~~~~~~~~~~~~c~~~~~C~~~~C~~~g~C~~~~~~~~~~~~~~   80 (143)
T 4d90_A            1 DICDPNPCENGGICLPGLADGSFSCECPDGFTDPNCSSVVEVASDEEEPTSAGPCTPNPCHNGGTCEISEAYRGDTFIGY   80 (143)
T ss_dssp             --CCSCCCGGGCEEEC-----CCEEECCTTCCTTTTCSCCCCTTTTTSCCCCCTTSSCCCCTTCEEEECCCEETTEECCE
T ss_pred             CcCCCCcCCCCCEeeCCCCCCCEEeECCCCCCCCCCccCccccccccccccCCcCCCCCCCCCCEecCCCccccCCCCCe
Confidence            4688899999999997653 579999999999999975            3456666677777777631      23567


Q ss_pred             EeeCCCCCcCCCCCcCCCcCCCCCCCCCcEEEeCCCCeEEecCCCCCCCCccc
Q psy15407        420 NCECAPGYTGDRCEINIDDCLSHKCENNATCVDLIQAYECRCAPGFQGEFCQT  472 (604)
Q Consensus       420 ~C~C~~g~~g~~C~~~~~~C~~~~C~~~~~C~~~~~~~~C~C~~g~~g~~C~~  472 (604)
                      .|.|++||.|..|+.++++|...+|.++++|+++.++|+|.|++||+|+.|+.
T Consensus        81 ~C~C~~G~~G~~C~~~i~~C~~~~C~~~~~C~~~~g~~~C~C~~G~~G~~c~~  133 (143)
T 4d90_A           81 VCKCPRGFNGIHCQHNINECEVEPCKNGGICTDLVANYSCECPGEFMGRNCQY  133 (143)
T ss_dssp             EEECCTTEESTTSCEECCTTTTCCSCTTCEEEEETTEEEEECCTTCBSTTSCB
T ss_pred             EeECcCCCcCCCcccCCCcCCCCCCCCCCEeECCCCCeEeECCCCCccCCcee
Confidence            77777777777776667777777777777777777777777777777776653

>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell adhesion, DI mutation, glycoprotein, HOST-virus interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo sapiens} PDB: 4g1e_B* 3ije_B* 4g1m_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B*

Probab=99.77  E-value=3.8e-19  Score=193.55  Aligned_cols=138  Identities=28%  Similarity=0.770  Sum_probs=116.9

Q ss_pred             CCCCCCCCCCeeeeCCCCceE---eeCCCCCcCCCCCcCC--------CcCCCC----CCCCCcEEEeCCCCeEEecC--
Q psy15407        400 CYGNPCRNSGTCKLLEEGRFN---CECAPGYTGDRCEINI--------DDCLSH----KCENNATCVDLIQAYECRCA--  462 (604)
Q Consensus       400 C~~~~C~~~~~C~~~~~~~~~---C~C~~g~~g~~C~~~~--------~~C~~~----~C~~~~~C~~~~~~~~C~C~--  462 (604)
                      |...||.+++.|.+ ..|.|.   |.|.+||.|..|+.++        ++|...    +|.++|+|++    +.|.|.  
T Consensus       437 C~~~pc~n~~~C~~-g~G~~~~G~C~C~~Gy~G~~Ce~~~~~~~~~~~~~C~~~~~~~~Cs~~G~C~~----g~C~C~~~  511 (690)
T 3fcs_B          437 CQAQAEPNSHRCNN-GNGTFECGVCRCGPGWLGSQCECSEEDYRPSQQDECSPREGQPVCSQRGECLC----GQCVCHSS  511 (690)
T ss_dssp             GGTTCCTTCTTTTT-TSEEEETTEEEECTTCCSSSSCCSCC------CCCCSSSSSSCGGGGSEEECS----SSEEECCC
T ss_pred             CcCCCCCCCCcccC-CCCeEeCCceEeCCCccCCceeeccCccCCccCCcCCCCCCCCCCCCCCEEEC----CeeEeecC
Confidence            44566777777764 356666   9999999999999776        889863    5999999997    479999  


Q ss_pred             --CCCCCCCcccCCCcCCCC-CCCCCCCCceeecCCCeEEecCCCCcCCcCc--ccCCCCCC---CCCCCCCEEeeCCCC
Q psy15407        463 --PGFQGEFCQTKTPFCAGE-YNPCRNGARCLDHFSHYTCECTPGFSGVNCT--VNVDDCVN---HMCQNGGTCVDGIND  534 (604)
Q Consensus       463 --~g~~g~~C~~~~~~C~~~-~~~C~~~~~C~~~~~~~~C~C~~g~~g~~c~--~~~~~C~~---~~C~~~~~C~~~~~~  534 (604)
                        +||.|..|+.+...|... ..+|.++|.|++    ++|.|.+||+|..|+  .+++.|..   .+|.++|+|+..   
T Consensus       512 ~~~Gy~G~~Ce~~~~~C~~~~~~~C~~~G~C~~----g~C~C~~Gy~G~~CeC~~~~~~C~~~~g~~C~~~G~C~~g---  584 (690)
T 3fcs_B          512 DFGKITGKYCECDDFSCVRYKGEMCSGHGQCSC----GDCLCDSDWTGYYCNCTTRTDTCMSSNGLLCSGRGKCECG---  584 (690)
T ss_dssp             SSCCCBSTTSCBCSSCCCBSSSSBGGGSEEEET----TEEEECTTEESSSSCEECCCTTTBCTTSSBTSSSCEEETT---
T ss_pred             CCCCeeCCCcCcccCcCcCCCCCCCCCCCEecC----CeeECcCCCcCCCCccCCCCCcccCCCCCCCCCCCEEeCC---
Confidence              999999999888889842 368999999988    689999999999999  67888975   579999999863   


Q ss_pred             eEeee-CCCCccCCCCc
Q psy15407        535 YTCKC-EGDFVGKFCEI  550 (604)
Q Consensus       535 y~C~C-~~G~~G~~C~~  550 (604)
                       +|.| ++||+|..|+.
T Consensus       585 -~C~C~~~Gy~G~~Ce~  600 (690)
T 3fcs_B          585 -SCVCIQPGSYGDTCEK  600 (690)
T ss_dssp             -EEECCSTTCBSTTSCB
T ss_pred             -EEECCCCCccCCCcCc
Confidence             8999 99999999997

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.77  E-value=1.8e-18  Score=196.34  Aligned_cols=87  Identities=23%  Similarity=0.243  Sum_probs=79.7

Q ss_pred             ccceeecCCCCceeeccCCCCCCCCCCCeEEecCCcceeeeccccCCCCcccEEEccCCccccCCcccccCcccceeeec
Q psy15407        216 VSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAI  295 (604)
Q Consensus       216 ~~L~~L~Ls~N~i~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L  295 (604)
                      .+|++|||++|+|+...+..|+.+++|+.|+|++|+|++..|..|..+++|+.|||++|+|+...+..|..+++|+.|+|
T Consensus       632 ~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~l  711 (768)
T 3rgz_A          632 GSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDL  711 (768)
T ss_dssp             BCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEEC
T ss_pred             ccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEEC
Confidence            37889999999999888889999999999999999999888999999999999999999999777778999999999999


Q ss_pred             cCCCccc
Q psy15407        296 GGNPLYC  302 (604)
Q Consensus       296 ~~Npl~C  302 (604)
                      ++|++.-
T Consensus       712 s~N~l~g  718 (768)
T 3rgz_A          712 SNNNLSG  718 (768)
T ss_dssp             CSSEEEE
T ss_pred             cCCcccc
Confidence            9999874

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.77  E-value=2.5e-18  Score=169.92  Aligned_cols=170  Identities=24%  Similarity=0.313  Sum_probs=134.1

Q ss_pred             cCcEEecCCCcceeecCCCccCCCCCCcEEeCCCCcceecCCCcCCCcccCCcCCCCCCCCCc--------cccccEEEc
Q psy15407        116 YTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDNYCPPKC--------TCTVRVLFY  187 (604)
Q Consensus       116 ~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~l~~~~~~~--------~~~l~~l~~  187 (604)
                      ..+.++++++.|+.||..  +.  ++|++|+|++|+|+.+++.+|.++++|+.|++++|.+..        +..++.+.+
T Consensus        17 ~~~~l~~~~~~l~~ip~~--~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l   92 (270)
T 2o6q_A           17 NKNSVDCSSKKLTAIPSN--IP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWV   92 (270)
T ss_dssp             TTTEEECTTSCCSSCCSC--CC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEEC
T ss_pred             CCCEEEccCCCCCccCCC--CC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEEC
Confidence            457899999999999863  33  789999999999999999999999999999999886432        233444444


Q ss_pred             cCCccccccccccceeeeeeccccCCccccceeecCCCCceeeccCCCCCCCCCCCeEEecCCcceeeeccccCCCCccc
Q psy15407        188 DGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLR  267 (604)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~i~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~  267 (604)
                      ..+..         .... . ...... .+|++|+|++|+|+.+++..|..+++|++|+|++|+|+.+++..|..+++|+
T Consensus        93 ~~n~l---------~~~~-~-~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~  160 (270)
T 2o6q_A           93 TDNKL---------QALP-I-GVFDQL-VNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLK  160 (270)
T ss_dssp             CSSCC---------CCCC-T-TTTTTC-SSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred             CCCcC---------CcCC-H-hHcccc-cCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccc
Confidence            33321         1110 0 011112 3788899999999998888888999999999999999998888888899999


Q ss_pred             EEEccCCccccCCcccccCcccceeeeccCCCcc
Q psy15407        268 IISLHGNDISMIPEGAFADLHAITHLAIGGNPLY  301 (604)
Q Consensus       268 ~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~Npl~  301 (604)
                      .|+|++|+|+.+++..|..+++|++|+|++|++.
T Consensus       161 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~  194 (270)
T 2o6q_A          161 ELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK  194 (270)
T ss_dssp             EEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred             eeEecCCcCcEeChhHhccCCCcCEEECCCCcCC
Confidence            9999999999998888888899999999998875

>2vj2_A Jagged-1; signalling, polymorphism, glycoprotein, extracellular, developmental protein, notch signaling pathway, EGF, DSL, notch, calcium, membrane; 2.50A {Homo sapiens} PDB: 2kb9_A

Probab=99.77  E-value=5.8e-20  Score=167.07  Aligned_cols=150  Identities=29%  Similarity=0.728  Sum_probs=95.3

Q ss_pred             CCceEeeCCCCCcCCCCCcCCCcCCCC-CCCCCcEEEeCCCCeEEecCCCCCCCCcccCCCcCCCCCCCCC-CCCceeec
Q psy15407        416 EGRFNCECAPGYTGDRCEINIDDCLSH-KCENNATCVDLIQAYECRCAPGFQGEFCQTKTPFCAGEYNPCR-NGARCLDH  493 (604)
Q Consensus       416 ~~~~~C~C~~g~~g~~C~~~~~~C~~~-~C~~~~~C~~~~~~~~C~C~~g~~g~~C~~~~~~C~~~~~~C~-~~~~C~~~  493 (604)
                      ...+.|.|++||.|..|+.   +|.+. .|.++++|..   ...|.|.+||+|..|+.  +.|..   .|. .++.|++ 
T Consensus        14 ~~~~~c~C~~g~~G~~C~~---~C~~~~~c~~~g~C~~---~g~C~C~~G~~G~~C~~--~~C~~---~C~~~~g~C~~-   81 (169)
T 2vj2_A           14 EGRSAVTCDDYYYGFGCNK---FCRPRDDFFGHYACDQ---NGNKTCMEGWMGPECNR--AICRQ---GCSPKHGSCKL-   81 (169)
T ss_dssp             -------CCTTEETTTTCE---ECCCEEETTEEEEECS---SCCEEECTTEESTTSCE--ECCCT---TCCTTTEECSS-
T ss_pred             ccCeeeeCCCcCcCCCccc---ccCCCCCcCCCCEeCC---CCeeECCCCCcCCCCCC--CCCCC---CCCCCCcccCC-
Confidence            3456777888888877762   35432 4666677743   34688888888887764  23542   454 4556754 


Q ss_pred             CCCeEEecCCCCcCCcCcccCCCCCCCC-CCCCCEEeeCCCCeEeeeCCCCccCCCCcCcccccCCCCCCCCCC-CCCCC
Q psy15407        494 FSHYTCECTPGFSGVNCTVNVDDCVNHM-CQNGGTCVDGINDYTCKCEGDFVGKFCEIAPFVAMMYPQTSPCQH-HDCKN  571 (604)
Q Consensus       494 ~~~~~C~C~~g~~g~~c~~~~~~C~~~~-C~~~~~C~~~~~~y~C~C~~G~~G~~C~~~~~~~~~~~~~~~C~~-~~C~~  571 (604)
                        .|+|.|++||+|..|+    +|..++ |.+ ++|+   ++|+|.|++||+|..|+..         .++|.. ..|.+
T Consensus        82 --~~~C~C~~G~~G~~C~----~C~~~~~C~~-g~C~---~~~~C~C~~G~~G~~C~~~---------~~~C~~~~~C~~  142 (169)
T 2vj2_A           82 --PGDCRCQYGWQGLYCD----KCIPHPGCVH-GICN---EPWQCLCETNWGGQLCDKD---------LNYCGTHQPCLN  142 (169)
T ss_dssp             --TTCCEECTTEESSSSC----EECCCTTCSS-EECS---STTCCEECTTEETTTTCEE---------SCHHHHTCCCCT
T ss_pred             --CCeeECCCCCCCCCcc----cCCCCCCCCC-CCcC---CCCEEeCCCCCCCCcccCC---------CCCCCCCCCCCC
Confidence              4678888888888875    355444 764 4776   4678888888888888742         345542 56666


Q ss_pred             Cc-eeCC-CCCCCeeeecCCCCcCCCCCC
Q psy15407        572 GI-CFQP-QGSNDYLCKCAPGYSGKESLL  598 (604)
Q Consensus       572 g~-C~~~-~g~~~~~C~C~~G~~G~~C~~  598 (604)
                      ++ |+++ .  ++|+|+|++||+|++||+
T Consensus       143 ~g~C~~~~~--~~~~C~C~~G~~G~~Ce~  169 (169)
T 2vj2_A          143 GGTCSNTGP--DKYQCSCPEGYSGPNCEI  169 (169)
T ss_dssp             TCEEEECST--TCEEEECCTTCCSTTSCC
T ss_pred             CCEEcCCCC--CCcEeECCCCCcCcCcCC
Confidence            54 8875 5  668888888888888874

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.77  E-value=2.3e-18  Score=168.27  Aligned_cols=154  Identities=23%  Similarity=0.322  Sum_probs=135.4

Q ss_pred             cCcEEecCCCcceeecCCCccCCCCCCcEEeCCCCcceecCCCcCCCcccCCcCCCCCCCCCccccccEEEccCCccccc
Q psy15407        116 YTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDNYCPPKCTCTVRVLFYDGRAGECY  195 (604)
Q Consensus       116 ~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~l~~~~~~~~~~l~~l~~~~~~~~~~  195 (604)
                      ..++++++++.|+.||..  +.  ++|++|+|++|+|+.+.+.+|.++++|+.|+|++|.+..+..              
T Consensus        15 ~~~~l~~~~~~l~~~p~~--~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--------------   76 (251)
T 3m19_A           15 GKKEVDCQGKSLDSVPSG--IP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSA--------------   76 (251)
T ss_dssp             GGTEEECTTCCCSSCCSC--CC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCT--------------
T ss_pred             CCeEEecCCCCccccCCC--CC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCH--------------
Confidence            457899999999999864  43  689999999999999999999999999999999876432110              


Q ss_pred             cccccceeeeeeccccCCccccceeecCCCCceeeccCCCCCCCCCCCeEEecCCcceeeeccccCCCCcccEEEccCCc
Q psy15407        196 IAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGND  275 (604)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~i~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~  275 (604)
                                   ..... ..+|++|+|++|+|+.+++..|..+++|++|+|++|+|+.+++..|..+++|++|+|++|+
T Consensus        77 -------------~~~~~-l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~  142 (251)
T 3m19_A           77 -------------GVFDD-LTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQ  142 (251)
T ss_dssp             -------------TTTTT-CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             -------------hHhcc-CCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCc
Confidence                         00011 1389999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccCCcccccCcccceeeeccCCCcc
Q psy15407        276 ISMIPEGAFADLHAITHLAIGGNPLY  301 (604)
Q Consensus       276 l~~i~~~~f~~l~~L~~L~L~~Npl~  301 (604)
                      |+.+++..|..+++|++|+|++|.+.
T Consensus       143 l~~~~~~~~~~l~~L~~L~L~~N~l~  168 (251)
T 3m19_A          143 LQSIPAGAFDKLTNLQTLSLSTNQLQ  168 (251)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred             CCccCHHHcCcCcCCCEEECCCCcCC
Confidence            99999999999999999999999886

>2vj2_A Jagged-1; signalling, polymorphism, glycoprotein, extracellular, developmental protein, notch signaling pathway, EGF, DSL, notch, calcium, membrane; 2.50A {Homo sapiens} PDB: 2kb9_A

Probab=99.77  E-value=9.4e-20  Score=165.65  Aligned_cols=151  Identities=28%  Similarity=0.717  Sum_probs=117.3

Q ss_pred             CceeeeCCCCCcCCCCcccCCCCCCC-CCCCCCeeeeCCCCceEeeCCCCCcCCCCCcCCCcCCCCCCC-CCcEEEeCCC
Q psy15407        378 RQYQCRCTPGYHGQHCEFMIDACYGN-PCRNSGTCKLLEEGRFNCECAPGYTGDRCEINIDDCLSHKCE-NNATCVDLIQ  455 (604)
Q Consensus       378 ~~~~C~C~~g~~G~~c~~~~~~C~~~-~C~~~~~C~~~~~~~~~C~C~~g~~g~~C~~~~~~C~~~~C~-~~~~C~~~~~  455 (604)
                      ..+.|.|++||+|..|+.   .|... .|.++++|..    ...|.|++||+|..|+.  +.|.. .|. .++.|++   
T Consensus        15 ~~~~c~C~~g~~G~~C~~---~C~~~~~c~~~g~C~~----~g~C~C~~G~~G~~C~~--~~C~~-~C~~~~g~C~~---   81 (169)
T 2vj2_A           15 GRSAVTCDDYYYGFGCNK---FCRPRDDFFGHYACDQ----NGNKTCMEGWMGPECNR--AICRQ-GCSPKHGSCKL---   81 (169)
T ss_dssp             ------CCTTEETTTTCE---ECCCEEETTEEEEECS----SCCEEECTTEESTTSCE--ECCCT-TCCTTTEECSS---
T ss_pred             cCeeeeCCCcCcCCCccc---ccCCCCCcCCCCEeCC----CCeeECCCCCcCCCCCC--CCCCC-CCCCCCcccCC---
Confidence            467999999999999984   35543 4777888853    34799999999999984  45653 575 6678865   


Q ss_pred             CeEEecCCCCCCCCcccCCCcCCCCCCCCCCCCceeecCCCeEEecCCCCcCCcCcccCCCCCC-CCCCCCCEEeeC-CC
Q psy15407        456 AYECRCAPGFQGEFCQTKTPFCAGEYNPCRNGARCLDHFSHYTCECTPGFSGVNCTVNVDDCVN-HMCQNGGTCVDG-IN  533 (604)
Q Consensus       456 ~~~C~C~~g~~g~~C~~~~~~C~~~~~~C~~~~~C~~~~~~~~C~C~~g~~g~~c~~~~~~C~~-~~C~~~~~C~~~-~~  533 (604)
                      .|.|.|++||+|..|+.    |... ..|.++ +|+   ++|+|.|++||+|..|+.++++|.. .+|.++|+|++. .+
T Consensus        82 ~~~C~C~~G~~G~~C~~----C~~~-~~C~~g-~C~---~~~~C~C~~G~~G~~C~~~~~~C~~~~~C~~~g~C~~~~~~  152 (169)
T 2vj2_A           82 PGDCRCQYGWQGLYCDK----CIPH-PGCVHG-ICN---EPWQCLCETNWGGQLCDKDLNYCGTHQPCLNGGTCSNTGPD  152 (169)
T ss_dssp             TTCCEECTTEESSSSCE----ECCC-TTCSSE-ECS---STTCCEECTTEETTTTCEESCHHHHTCCCCTTCEEEECSTT
T ss_pred             CCeeECCCCCCCCCccc----CCCC-CCCCCC-CcC---CCCEEeCCCCCCCCcccCCCCCCCCCCCCCCCCEEcCCCCC
Confidence            58899999999999963    4432 237754 887   5789999999999999988999975 799999999996 88


Q ss_pred             CeEeeeCCCCccCCCCc
Q psy15407        534 DYTCKCEGDFVGKFCEI  550 (604)
Q Consensus       534 ~y~C~C~~G~~G~~C~~  550 (604)
                      +|+|.|++||+|..|++
T Consensus       153 ~~~C~C~~G~~G~~Ce~  169 (169)
T 2vj2_A          153 KYQCSCPEGYSGPNCEI  169 (169)
T ss_dssp             CEEEECCTTCCSTTSCC
T ss_pred             CcEeECCCCCcCcCcCC
Confidence            99999999999999973

>4fbr_A Lectin, myxobacterial hemagglutinin; beta-barrel, HIV-inactivating, carbohydrate binding protein; 1.60A {Myxococcus xanthus} PDB: 4fbv_A*

Probab=99.77  E-value=2.1e-22  Score=191.24  Aligned_cols=186  Identities=14%  Similarity=0.074  Sum_probs=140.5

Q ss_pred             CCceeeeCCCC---CcCCCCcccCCCCCCCCCCCCCeeeeCCCCceEeeCCCCCcCCCCCcCCCc------CCCCCCCCC
Q psy15407        377 ERQYQCRCTPG---YHGQHCEFMIDACYGNPCRNSGTCKLLEEGRFNCECAPGYTGDRCEINIDD------CLSHKCENN  447 (604)
Q Consensus       377 ~~~~~C~C~~g---~~G~~c~~~~~~C~~~~C~~~~~C~~~~~~~~~C~C~~g~~g~~C~~~~~~------C~~~~C~~~  447 (604)
                      .|.+++.+.+|   +.|.+++..+.++.. +|.++|+|++. .++|.|.|+.||+|..|+.++++      |...||.++
T Consensus        10 ~Gg~s~~~~pgg~~~~g~~~~~n~~~~~~-~c~ngG~C~~g-~~~y~C~Cp~Gf~G~~Ce~ni~ec~~~~~c~s~pC~ng   87 (267)
T 4fbr_A           10 WGGSQATWNPGGLWLIGARDKQNVVALDI-KSDDGGKTLKG-TMTYNGEGPIGFRGTLSSANNYTVENQWGGTSAPWQPG   87 (267)
T ss_dssp             CSSTTSCCEEEEEEECCCCSSCCEEEEEE-ECSSTTSEEEE-EEEETTSCCEEEEEEECSTTEEEEEEESSSTTSCEEEE
T ss_pred             CCcccCCcCCCCceeeccccccccccCCC-CcCCCCeecCC-CCCeEEeCCCCcccccccccccccccccCcCCCcccCC
Confidence            35677788777   678888877766654 78899999884 68999999999999999999999      666777776


Q ss_pred             cEEEeCCCCeEEecCCCCCCCCcccCCCcCCCCCCCCCCCCceeecCCCeEEecCCCCcCCcCcccCCCCCCCCCCCCCE
Q psy15407        448 ATCVDLIQAYECRCAPGFQGEFCQTKTPFCAGEYNPCRNGARCLDHFSHYTCECTPGFSGVNCTVNVDDCVNHMCQNGGT  527 (604)
Q Consensus       448 ~~C~~~~~~~~C~C~~g~~g~~C~~~~~~C~~~~~~C~~~~~C~~~~~~~~C~C~~g~~g~~c~~~~~~C~~~~C~~~~~  527 (604)
                      ++|              |.|..|+.. ++|..  .+|.++++|++...+|+|.|++||+|..|+.++++|...++...+.
T Consensus        88 gtc--------------~~G~~c~~~-~eC~s--~pC~ngG~C~~~~~sy~C~C~~Gf~G~~Ce~~~d~C~n~~~c~s~p  150 (267)
T 4fbr_A           88 GVW--------------VLGARDKQN-IVAVS--IKSNDGGKTLTGTTTYNGEGPIGFKSEVTDGDTYSVENQWGGSAAP  150 (267)
T ss_dssp             EEE--------------ECCCCSSCC-EEEEE--EECSSTTSEEEEEEEETTSCCEEEEEEECCCCEEEEEEECSSTTSC
T ss_pred             Cee--------------eccCccccc-cccCC--CCCCCCCEEecCCccEEeeCCCCccccCCCCCcccccccCCcCCcc
Confidence            665              356777644 57775  5899999999999999999999999999999888855443333333


Q ss_pred             EeeCCCCeEeeeCCCCccCCCCcCcccccCCCCCCCCCCCCCCCCc-eeCCCCCCCeeeecCCCCcCCCCCCCcc
Q psy15407        528 CVDGINDYTCKCEGDFVGKFCEIAPFVAMMYPQTSPCQHHDCKNGI-CFQPQGSNDYLCKCAPGYSGKESLLQQT  601 (604)
Q Consensus       528 C~~~~~~y~C~C~~G~~G~~C~~~~~~~~~~~~~~~C~~~~C~~g~-C~~~~g~~~~~C~C~~G~~G~~C~~~~~  601 (604)
                      |.+.        ..+|.|.+|+..          ..|...+|.+++ |++..  ++|+|.|++||+|..|+...+
T Consensus       151 C~ng--------g~c~~G~~c~~~----------i~c~~~~c~ngg~C~dg~--~~y~C~Cp~Gf~G~~c~~~i~  205 (267)
T 4fbr_A          151 WHSG--------GVWVLGTRGKQN----------VINVDAKSNDGGKTLSGT--MTYNGEGPIGFRGTLTSPDTY  205 (267)
T ss_dssp             CEEE--------EEEECCSSTTSC----------EEEEEEECSSTTSEEEEE--EEETTSCCEEEEEEEEETTEE
T ss_pred             ccCC--------cceecccccccc----------cccCCCCCCCCCEeeCCC--CCeEEeCCCCccccccccccc
Confidence            3321        111346667653          223445566666 99988  889999999999999986554

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.76  E-value=1.7e-18  Score=185.71  Aligned_cols=202  Identities=18%  Similarity=0.167  Sum_probs=145.8

Q ss_pred             CCeEEcCCCCCCcCCC-CC--CccCcEEecCCCcceeecCCCccCCCCCCcEEeCCCCcceecCCCcCCCcccCCcCCCC
Q psy15407         96 GTRVDCSQRGLKEIPK-DI--PLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDN  172 (604)
Q Consensus        96 ~~~l~cs~~~L~~iP~-~l--~~~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~l~  172 (604)
                      -+.|++++|.|+.+|. .+  ...+++|+|++|.|+.+++   |..+++|++|+|++|.|+.+++.     ++|+.|+++
T Consensus        36 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~Ls~N~l~~l~~~-----~~L~~L~L~  107 (487)
T 3oja_A           36 VKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD---LESLSTLRTLDLNNNYVQELLVG-----PSIETLHAA  107 (487)
T ss_dssp             CCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE---CTTCTTCCEEECCSSEEEEEEEC-----TTCCEEECC
T ss_pred             ccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc---cccCCCCCEEEecCCcCCCCCCC-----CCcCEEECc
Confidence            3789999999998864 34  4567999999999988765   88999999999999999887643     567777777


Q ss_pred             CCCCCc-----cccccEEEccCCccccc---------------cccccceeeeeeccccCCccccceeecCCCCceeecc
Q psy15407        173 YCPPKC-----TCTVRVLFYDGRAGECY---------------IAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLS  232 (604)
Q Consensus       173 ~~~~~~-----~~~l~~l~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~i~~l~  232 (604)
                      +|.+..     +..+..+.+..+.....               +..+.+... ....+...+ .+|++|+|++|.|+.++
T Consensus       108 ~N~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~l~~~l-~~L~~L~Ls~N~l~~~~  185 (487)
T 3oja_A          108 NNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTV-NFAELAASS-DTLEHLNLQYNFIYDVK  185 (487)
T ss_dssp             SSCCCCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEE-EGGGGGGGT-TTCCEEECTTSCCCEEE
T ss_pred             CCcCCCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCc-ChHHHhhhC-CcccEEecCCCcccccc
Confidence            765432     23445555554432211               111111111 011111122 37889999999998886


Q ss_pred             CCCCCCCCCCCeEEecCCcceeeeccccCCCCcccEEEccCCccccCCcccccCcccceeeeccCCCcccccCCCcccc
Q psy15407        233 NFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIGGNPLYCDCGLAWLSE  311 (604)
Q Consensus       233 ~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~Npl~CdC~l~~l~~  311 (604)
                      +.  ..+++|+.|+|++|+|+.+++. |..+++|+.|+|++|.|+.+|.. |..+++|+.|+|++|+|.|++...|+..
T Consensus       186 ~~--~~l~~L~~L~Ls~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~lp~~-l~~l~~L~~L~l~~N~l~c~~~~~~~~~  260 (487)
T 3oja_A          186 GQ--VVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVLIEKA-LRFSQNLEHFDLRGNGFHCGTLRDFFSK  260 (487)
T ss_dssp             CC--CCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCCEECTT-CCCCTTCCEEECTTCCBCHHHHHHHHTT
T ss_pred             cc--ccCCCCCEEECCCCCCCCCCHh-HcCCCCccEEEecCCcCcccchh-hccCCCCCEEEcCCCCCcCcchHHHHHh
Confidence            53  3588999999999999998765 88889999999999999998875 7788999999999999998876555544

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.76  E-value=2.4e-19  Score=181.12  Aligned_cols=200  Identities=17%  Similarity=0.112  Sum_probs=139.8

Q ss_pred             CCeEEcCCCCCC-cCCCCC----CccCcEEecCCCcceeecCC---CccCCCCCCcEEeCCCCcceecCCCcCCCcccCC
Q psy15407         96 GTRVDCSQRGLK-EIPKDI----PLYTTELILNDNEIGKIKSD---GLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQG  167 (604)
Q Consensus        96 ~~~l~cs~~~L~-~iP~~l----~~~~~~L~L~~N~i~~i~~~---~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~  167 (604)
                      -+.|++++|.|+ .+|..+    ...+++|+|++|.|+...+.   ..|..+++|++|+|++|+|+.+.+..|..+++|+
T Consensus        93 L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~  172 (310)
T 4glp_A           93 LKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALT  172 (310)
T ss_dssp             CCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCC
T ss_pred             eeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCC
Confidence            478999999988 455554    45679999999999763220   1145789999999999999999999999999999


Q ss_pred             cCCCCCCCCCccccc---cEEEccCCccccccccccceeeeeecc-ccCCccccceeecCCCCceeeccCCCCCCC---C
Q psy15407        168 CLGDNYCPPKCTCTV---RVLFYDGRAGECYIAVELFSSRIRVSY-YVGNYPVSTMYRDLSNNQIGFLSNFTFSPL---S  240 (604)
Q Consensus       168 ~L~l~~~~~~~~~~l---~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~L~~L~Ls~N~i~~l~~~~f~~l---~  240 (604)
                      .|+|++|.+.....+   ..+.-...+..+.+..+.+........ +... ..+|++|+|++|+|+.+.+..+..+   +
T Consensus       173 ~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~-l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~  251 (310)
T 4glp_A          173 SLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAA-GVQPHSLDLSHNSLRATVNPSAPRCMWSS  251 (310)
T ss_dssp             EEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHH-TCCCSSEECTTSCCCCCCCSCCSSCCCCT
T ss_pred             EEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhc-CCCCCEEECCCCCCCccchhhHHhccCcC
Confidence            999999875321110   000001122333333333221111000 1111 1388999999999999865555555   6


Q ss_pred             CCCeEEecCCcceeeeccccCCCCcccEEEccCCccccCCcccccCcccceeeeccCCCcc
Q psy15407        241 KLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIGGNPLY  301 (604)
Q Consensus       241 ~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~Npl~  301 (604)
                      +|++|+|++|+|+.++...+   ++|++|+|++|+|+.+|.  +..+++|+.|+|++|+|.
T Consensus       252 ~L~~L~Ls~N~l~~lp~~~~---~~L~~L~Ls~N~l~~~~~--~~~l~~L~~L~L~~N~l~  307 (310)
T 4glp_A          252 ALNSLNLSFAGLEQVPKGLP---AKLRVLDLSSNRLNRAPQ--PDELPEVDNLTLDGNPFL  307 (310)
T ss_dssp             TCCCEECCSSCCCSCCSCCC---SCCSCEECCSCCCCSCCC--TTSCCCCSCEECSSTTTS
T ss_pred             cCCEEECCCCCCCchhhhhc---CCCCEEECCCCcCCCCch--hhhCCCccEEECcCCCCC
Confidence            99999999999998865443   789999999999998865  688899999999999985

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.76  E-value=6.5e-18  Score=186.30  Aligned_cols=202  Identities=17%  Similarity=0.177  Sum_probs=151.9

Q ss_pred             CCeEEcCCCCCCcCCC-CC--CccCcEEecCCCcceeecCCCccCCCCCCcEEeCCCCcceecCCCcCCCcccCCcCCCC
Q psy15407         96 GTRVDCSQRGLKEIPK-DI--PLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDN  172 (604)
Q Consensus        96 ~~~l~cs~~~L~~iP~-~l--~~~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~l~  172 (604)
                      -+.|+++++.|+.+|. .+  ...+++|+|++|.|+.+++. +|.++++|++|+|++|.|+.+++..|.++++|+.|+|+
T Consensus        77 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls  155 (597)
T 3oja_B           77 VELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPH-VFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMS  155 (597)
T ss_dssp             CSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTT-TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHH-HHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEee
Confidence            3789999999998875 34  45679999999999998774 48999999999999999999999999999999999999


Q ss_pred             CCCC--------CccccccEEEccCCccccc------------cccccceee-------------eeeccccCCccccce
Q psy15407        173 YCPP--------KCTCTVRVLFYDGRAGECY------------IAVELFSSR-------------IRVSYYVGNYPVSTM  219 (604)
Q Consensus       173 ~~~~--------~~~~~l~~l~~~~~~~~~~------------~~~~~~~~~-------------~~~~~~~~~~~~~L~  219 (604)
                      +|.+        ..+..|..+.+..+.....            +..+.+...             ..+..+.+..+.+|+
T Consensus       156 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~  235 (597)
T 3oja_B          156 NNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELT  235 (597)
T ss_dssp             SSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCCSCCC
T ss_pred             CCcCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccccccCCchhheeeccCCcccccccccCCCCC
Confidence            8853        2345677777766543211            111111110             011112222334577


Q ss_pred             eecCCCCceeeccCCCCCCCCCCCeEEecCCcceeeeccccCCCCcccEEEccCCccccCCcccccCcccceeeeccCCC
Q psy15407        220 YRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIGGNP  299 (604)
Q Consensus       220 ~L~Ls~N~i~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~Np  299 (604)
                      .|+|++|.|+.+  ..|..+++|+.|+|++|.|+.+.+..|..+++|+.|+|++|+|+.++.. +..+++|+.|+|++|+
T Consensus       236 ~L~L~~n~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~-~~~l~~L~~L~Ls~N~  312 (597)
T 3oja_B          236 ILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLY-GQPIPTLKVLDLSHNH  312 (597)
T ss_dssp             EEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEEECS-SSCCTTCCEEECCSSC
T ss_pred             EEECCCCCCCCC--hhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCCCcc-cccCCCCcEEECCCCC
Confidence            777777777764  3577889999999999999999999999999999999999999998764 5678899999999998


Q ss_pred             cc
Q psy15407        300 LY  301 (604)
Q Consensus       300 l~  301 (604)
                      +.
T Consensus       313 l~  314 (597)
T 3oja_B          313 LL  314 (597)
T ss_dssp             CC
T ss_pred             CC
Confidence            86

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.75  E-value=2.6e-18  Score=188.43  Aligned_cols=79  Identities=20%  Similarity=0.259  Sum_probs=54.2

Q ss_pred             CCCCCCeeC---CCeEEcCCCCCCcCCCCCCccCcEEecCCCcceeecCCCccCCCCCCcEEeCCCCcceecCCCcCCCc
Q psy15407         87 ACPSGCSCD---GTRVDCSQRGLKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGE  163 (604)
Q Consensus        87 ~CP~~C~C~---~~~l~cs~~~L~~iP~~l~~~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~l  163 (604)
                      .||..|.|.   .+.|+|++++|++||..++..+++|+|++|.|+.|+.     .+++|++|+|++|+|+.|+.    .+
T Consensus        30 ~~~~~~~c~~~~l~~L~ls~n~L~~lp~~l~~~L~~L~L~~N~l~~lp~-----~l~~L~~L~Ls~N~l~~lp~----~l  100 (622)
T 3g06_A           30 VVQKMRACLNNGNAVLNVGESGLTTLPDCLPAHITTLVIPDNNLTSLPA-----LPPELRTLEVSGNQLTSLPV----LP  100 (622)
T ss_dssp             HHHHHHHHHHHCCCEEECCSSCCSCCCSCCCTTCSEEEECSCCCSCCCC-----CCTTCCEEEECSCCCSCCCC----CC
T ss_pred             cCcccccccCCCCcEEEecCCCcCccChhhCCCCcEEEecCCCCCCCCC-----cCCCCCEEEcCCCcCCcCCC----CC
Confidence            356667773   4678888888888888888888888888888887764     35667777777777766654    33


Q ss_pred             ccCCcCCCCCC
Q psy15407        164 NDQGCLGDNYC  174 (604)
Q Consensus       164 ~~L~~L~l~~~  174 (604)
                      ++|+.|++++|
T Consensus       101 ~~L~~L~Ls~N  111 (622)
T 3g06_A          101 PGLLELSIFSN  111 (622)
T ss_dssp             TTCCEEEECSC
T ss_pred             CCCCEEECcCC
Confidence            44444444444

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.75  E-value=3.3e-18  Score=170.92  Aligned_cols=164  Identities=25%  Similarity=0.231  Sum_probs=140.0

Q ss_pred             CeEEcCCCCCCcCCCCC--CccCcEEecCCCcceeecCCCccCCCCCCcEEeCCCCcceecCCCcCCCcccCCcCCCCCC
Q psy15407         97 TRVDCSQRGLKEIPKDI--PLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDNYC  174 (604)
Q Consensus        97 ~~l~cs~~~L~~iP~~l--~~~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~l~~~  174 (604)
                      +.|+++++.++.+|. +  ...+++|+|++|+|+.+++   |..+++|++|+|++|+|+.++.  |..+++|+.|++++|
T Consensus        49 ~~L~l~~~~i~~~~~-~~~l~~L~~L~L~~n~l~~~~~---l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~n  122 (291)
T 1h6t_A           49 DQIIANNSDIKSVQG-IQYLPNVTKLFLNGNKLTDIKP---LANLKNLGWLFLDENKVKDLSS--LKDLKKLKSLSLEHN  122 (291)
T ss_dssp             CEEECTTSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG---GTTCTTCCEEECCSSCCCCGGG--GTTCTTCCEEECTTS
T ss_pred             cEEEccCCCcccChh-HhcCCCCCEEEccCCccCCCcc---cccCCCCCEEECCCCcCCCChh--hccCCCCCEEECCCC
Confidence            789999999999875 4  4678999999999999875   8899999999999999998764  888999999998887


Q ss_pred             CCCccccccEEEccCCccccccccccceeeeeeccccCCccccceeecCCCCceeeccCCCCCCCCCCCeEEecCCccee
Q psy15407        175 PPKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQC  254 (604)
Q Consensus       175 ~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~i~~l~~~~f~~l~~L~~L~Ls~N~l~~  254 (604)
                      .+..+..                             ... ..+|+.|+|++|+|+.+  ..|..+++|++|+|++|+|+.
T Consensus       123 ~i~~~~~-----------------------------l~~-l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~  170 (291)
T 1h6t_A          123 GISDING-----------------------------LVH-LPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISD  170 (291)
T ss_dssp             CCCCCGG-----------------------------GGG-CTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCC
T ss_pred             cCCCChh-----------------------------hcC-CCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCcccc
Confidence            6542210                             011 13899999999999998  468899999999999999999


Q ss_pred             eeccccCCCCcccEEEccCCccccCCcccccCcccceeeeccCCCccc
Q psy15407        255 IDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIGGNPLYC  302 (604)
Q Consensus       255 i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~Npl~C  302 (604)
                      +++  |..+++|+.|+|++|+|+.++.  +..+++|+.|+|++|++..
T Consensus       171 ~~~--l~~l~~L~~L~L~~N~i~~l~~--l~~l~~L~~L~l~~n~i~~  214 (291)
T 1h6t_A          171 IVP--LAGLTKLQNLYLSKNHISDLRA--LAGLKNLDVLELFSQECLN  214 (291)
T ss_dssp             CGG--GTTCTTCCEEECCSSCCCBCGG--GTTCTTCSEEEEEEEEEEC
T ss_pred             chh--hcCCCccCEEECCCCcCCCChh--hccCCCCCEEECcCCcccC
Confidence            976  8999999999999999999874  8899999999999999864

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.74  E-value=1.9e-18  Score=175.80  Aligned_cols=197  Identities=15%  Similarity=0.018  Sum_probs=150.4

Q ss_pred             CCeEEcCCCCCCcCCCCC--CccCcEEecCCCcceeecCCCccCCCCCCcEEeCCCCcceecCCCcC---------CCcc
Q psy15407         96 GTRVDCSQRGLKEIPKDI--PLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAF---------EGEN  164 (604)
Q Consensus        96 ~~~l~cs~~~L~~iP~~l--~~~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f---------~~l~  164 (604)
                      -+.|++++|.|+.||..+  ...+++|+|++|.|+.|+..  |.++++|++|+|++|++....+..+         .+++
T Consensus       106 L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~--l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~  183 (328)
T 4fcg_A          106 LQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPAS--IASLNRLRELSIRACPELTELPEPLASTDASGEHQGLV  183 (328)
T ss_dssp             CSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGG--GGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEEST
T ss_pred             CCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHH--HhcCcCCCEEECCCCCCccccChhHhhccchhhhccCC
Confidence            378999999999999877  45789999999999999764  8999999999999976655444443         4599


Q ss_pred             cCCcCCCCCCCCCccccccEEEccCCccccccccccceeeeeeccccCCccccceeecCCCCceeeccCCCCCCCCCCCe
Q psy15407        165 DQGCLGDNYCPPKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQ  244 (604)
Q Consensus       165 ~L~~L~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~i~~l~~~~f~~l~~L~~  244 (604)
                      +|+.|++++|.+..++..  +.-...+..+.+..+.+....   .....+ .+|++|+|++|.+....+..|..+++|++
T Consensus       184 ~L~~L~L~~n~l~~lp~~--l~~l~~L~~L~L~~N~l~~l~---~~l~~l-~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~  257 (328)
T 4fcg_A          184 NLQSLRLEWTGIRSLPAS--IANLQNLKSLKIRNSPLSALG---PAIHHL-PKLEELDLRGCTALRNYPPIFGGRAPLKR  257 (328)
T ss_dssp             TCCEEEEEEECCCCCCGG--GGGCTTCCEEEEESSCCCCCC---GGGGGC-TTCCEEECTTCTTCCBCCCCTTCCCCCCE
T ss_pred             CCCEEECcCCCcCcchHh--hcCCCCCCEEEccCCCCCcCc---hhhccC-CCCCEEECcCCcchhhhHHHhcCCCCCCE
Confidence            999999998876533211  111122233333333322211   111222 38999999999998888889999999999


Q ss_pred             EEecCCcceeeeccccCCCCcccEEEccCCccccCCcccccCcccceeeeccCCCc
Q psy15407        245 LILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIGGNPL  300 (604)
Q Consensus       245 L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~Npl  300 (604)
                      |+|++|++....+..|..+++|++|+|++|++....+..|..+++|+.+++..|.+
T Consensus       258 L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~  313 (328)
T 4fcg_A          258 LILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQ  313 (328)
T ss_dssp             EECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGS
T ss_pred             EECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHH
Confidence            99999998888888899999999999999887765566799999999999987755

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.74  E-value=7.2e-18  Score=161.13  Aligned_cols=128  Identities=28%  Similarity=0.378  Sum_probs=119.6

Q ss_pred             cEEecCCCcceeecCCCccCCCCCCcEEeCCCCcceecCCCcCCCcccCCcCCCCCCCCCccccccEEEccCCccccccc
Q psy15407        118 TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDNYCPPKCTCTVRVLFYDGRAGECYIA  197 (604)
Q Consensus       118 ~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~l~~~~~~~~~~l~~l~~~~~~~~~~~~  197 (604)
                      +.+++++|.|+.||..  +.  ++|+.|+|++|+|+.+++.+|.+++                                 
T Consensus        14 ~~v~c~~~~l~~iP~~--l~--~~l~~L~l~~n~i~~i~~~~~~~l~---------------------------------   56 (220)
T 2v9t_B           14 NIVDCRGKGLTEIPTN--LP--ETITEIRLEQNTIKVIPPGAFSPYK---------------------------------   56 (220)
T ss_dssp             TEEECTTSCCSSCCSS--CC--TTCCEEECCSSCCCEECTTSSTTCT---------------------------------
T ss_pred             CEEEcCCCCcCcCCCc--cC--cCCCEEECCCCcCCCcCHhHhhCCC---------------------------------
Confidence            6799999999999864  33  7899999999999999999998775                                 


Q ss_pred             cccceeeeeeccccCCccccceeecCCCCceeeccCCCCCCCCCCCeEEecCCcceeeeccccCCCCcccEEEccCCccc
Q psy15407        198 VELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDIS  277 (604)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~i~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~  277 (604)
                                         +|++|+|++|+|+.+.+..|.++++|++|+|++|+|+.+++..|.++++|++|+|++|+|+
T Consensus        57 -------------------~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~  117 (220)
T 2v9t_B           57 -------------------KLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKIN  117 (220)
T ss_dssp             -------------------TCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             -------------------CCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCC
Confidence                               7888999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCcccccCcccceeeeccCCCcc
Q psy15407        278 MIPEGAFADLHAITHLAIGGNPLY  301 (604)
Q Consensus       278 ~i~~~~f~~l~~L~~L~L~~Npl~  301 (604)
                      .+++..|..+++|+.|+|++|.+.
T Consensus       118 ~~~~~~~~~l~~L~~L~L~~N~l~  141 (220)
T 2v9t_B          118 CLRVDAFQDLHNLNLLSLYDNKLQ  141 (220)
T ss_dssp             CCCTTTTTTCTTCCEEECCSSCCS
T ss_pred             EeCHHHcCCCCCCCEEECCCCcCC
Confidence            999999999999999999999875

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.74  E-value=1.6e-18  Score=170.42  Aligned_cols=163  Identities=19%  Similarity=0.239  Sum_probs=139.4

Q ss_pred             eEEcCCCCCCcCCCCC--CccCcEEecCCCcceeecCCCccCCCCCCcEEeCCCCcceecCCCcCCCcccCCcCCCCCCC
Q psy15407         98 RVDCSQRGLKEIPKDI--PLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDNYCP  175 (604)
Q Consensus        98 ~l~cs~~~L~~iP~~l--~~~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~l~~~~  175 (604)
                      .++++++.++.++. +  ...++.|+|++|.|+.++ .  |..+++|++|+|++|+|+.+++  |..+++|+.|++++|.
T Consensus        23 ~l~l~~~~i~~~~~-~~~l~~L~~L~l~~n~i~~l~-~--l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~   96 (263)
T 1xeu_A           23 KQNLGKQSVTDLVS-QKELSGVQNFNGDNSNIQSLA-G--MQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNR   96 (263)
T ss_dssp             HHHHTCSCTTSEEC-HHHHTTCSEEECTTSCCCCCT-T--GGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSC
T ss_pred             HHHhcCCCcccccc-hhhcCcCcEEECcCCCcccch-H--HhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCCc
Confidence            46788888988873 3  467799999999999986 2  8999999999999999999987  8999999999999876


Q ss_pred             CCccccccEEEccCCccccccccccceeeeeeccccCCccccceeecCCCCceeeccCCCCCCCCCCCeEEecCCcceee
Q psy15407        176 PKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCI  255 (604)
Q Consensus       176 ~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~i~~l~~~~f~~l~~L~~L~Ls~N~l~~i  255 (604)
                      +..+..                            +..   .+|++|+|++|+|+.++  .|..+++|++|+|++|+|+.+
T Consensus        97 l~~l~~----------------------------~~~---~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~Ls~N~i~~~  143 (263)
T 1xeu_A           97 LKNLNG----------------------------IPS---ACLSRLFLDNNELRDTD--SLIHLKNLEILSIRNNKLKSI  143 (263)
T ss_dssp             CSCCTT----------------------------CCC---SSCCEEECCSSCCSBSG--GGTTCTTCCEEECTTSCCCBC
T ss_pred             cCCcCc----------------------------ccc---CcccEEEccCCccCCCh--hhcCcccccEEECCCCcCCCC
Confidence            542211                            111   38999999999999986  488999999999999999998


Q ss_pred             eccccCCCCcccEEEccCCccccCCcccccCcccceeeeccCCCcccc
Q psy15407        256 DRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIGGNPLYCD  303 (604)
Q Consensus       256 ~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~Npl~Cd  303 (604)
                      +  .|..+++|+.|+|++|+|+.+  ..|..+++|+.|+|++|++...
T Consensus       144 ~--~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~  187 (263)
T 1xeu_A          144 V--MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE  187 (263)
T ss_dssp             G--GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred             h--HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence            4  688999999999999999999  4689999999999999999876

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.74  E-value=7.5e-18  Score=182.79  Aligned_cols=94  Identities=21%  Similarity=0.168  Sum_probs=74.6

Q ss_pred             CCeEEcCCCCCCcCCCCCCccCcEEecCCCcceeecCCCccCCCCCCcEEeCCCCcceecCCCcCCCcccCCcCCCCCCC
Q psy15407         96 GTRVDCSQRGLKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDNYCP  175 (604)
Q Consensus        96 ~~~l~cs~~~L~~iP~~l~~~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~l~~~~  175 (604)
                      ++.|+|++++|+.||..++..+++|+|++|.|+.+++. .|.++++|++|+|++|+|+.+.+.+|.++++|++|+|++|.
T Consensus         2 ~~~l~ls~n~l~~ip~~~~~~L~~L~Ls~n~i~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~   80 (520)
T 2z7x_B            2 EFLVDRSKNGLIHVPKDLSQKTTILNISQNYISELWTS-DILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK   80 (520)
T ss_dssp             CCEEECTTSCCSSCCCSCCTTCSEEECCSSCCCCCCHH-HHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSC
T ss_pred             cceEecCCCCcccccccccccccEEECCCCcccccChh-hccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCc
Confidence            46788999999999988888888899999998888653 38888888888888888888888888888888888888875


Q ss_pred             CCcc-----ccccEEEccCC
Q psy15407        176 PKCT-----CTVRVLFYDGR  190 (604)
Q Consensus       176 ~~~~-----~~l~~l~~~~~  190 (604)
                      +..+     ..++.+.+..+
T Consensus        81 l~~lp~~~l~~L~~L~L~~N  100 (520)
T 2z7x_B           81 LVKISCHPTVNLKHLDLSFN  100 (520)
T ss_dssp             CCEEECCCCCCCSEEECCSS
T ss_pred             eeecCccccCCccEEeccCC
Confidence            5433     34555655544

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.74  E-value=6.4e-18  Score=160.09  Aligned_cols=146  Identities=26%  Similarity=0.334  Sum_probs=129.5

Q ss_pred             CCeEEcCCCCCCcCCCCC---CccCcEEecCCCcceeecCCCccCCCCCCcEEeCCCCcceecCCCcCCCcccCCcCCCC
Q psy15407         96 GTRVDCSQRGLKEIPKDI---PLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDN  172 (604)
Q Consensus        96 ~~~l~cs~~~L~~iP~~l---~~~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~l~  172 (604)
                      -+.|++++++|+.+|..+   ...+++|+|++|+|+.+++. +|..+++|++|+|++|+|+.+++..|..++        
T Consensus        30 l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~--------  100 (208)
T 2o6s_A           30 TTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNG-VFNKLTSLTYLNLSTNQLQSLPNGVFDKLT--------  100 (208)
T ss_dssp             CSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTT-TTTTCTTCCEEECCSSCCCCCCTTTTTTCT--------
T ss_pred             CcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChh-hcCCCCCcCEEECCCCcCCccCHhHhcCcc--------
Confidence            478999999999998764   46789999999999999764 589999999999999999999988887764        


Q ss_pred             CCCCCccccccEEEccCCccccccccccceeeeeeccccCCccccceeecCCCCceeeccCCCCCCCCCCCeEEecCCcc
Q psy15407        173 YCPPKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKL  252 (604)
Q Consensus       173 ~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~i~~l~~~~f~~l~~L~~L~Ls~N~l  252 (604)
                                                                  +|++|+|++|+|+.+++..|..+++|++|+|++|+|
T Consensus       101 --------------------------------------------~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l  136 (208)
T 2o6s_A          101 --------------------------------------------QLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQL  136 (208)
T ss_dssp             --------------------------------------------TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             --------------------------------------------CCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCcc
Confidence                                                        788889999999999998899999999999999999


Q ss_pred             eeeeccccCCCCcccEEEccCCccccCCcccccCcccceeeeccCCCcc
Q psy15407        253 QCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIGGNPLY  301 (604)
Q Consensus       253 ~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~Npl~  301 (604)
                      +.+++..|..+++|+.|+|++|.+..       .+++|+.|+++.|.+.
T Consensus       137 ~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~  178 (208)
T 2o6s_A          137 KSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHS  178 (208)
T ss_dssp             SCCCTTTTTTCTTCCEEECCSCCBCC-------CTTTTHHHHHHHHHCT
T ss_pred             ceeCHHHhccCCCccEEEecCCCeec-------CCCCHHHHHHHHHhCC
Confidence            99998889999999999999997753       4557888888888776

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.74  E-value=5.3e-19  Score=179.12  Aligned_cols=187  Identities=20%  Similarity=0.211  Sum_probs=125.3

Q ss_pred             CeEEcCCCCCCcCCC-CC--CccCcEEecCCCcceeecCCCccCCCCCCcEEeCCCCcceecCCCcCCCcccCCcCCCCC
Q psy15407         97 TRVDCSQRGLKEIPK-DI--PLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDNY  173 (604)
Q Consensus        97 ~~l~cs~~~L~~iP~-~l--~~~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~l~~  173 (604)
                      +.|++++|+|+.++. .+  ...+++|+|++|.|+.+++   |..+++|++|+|++|+|+.+++.     ++|+.|++++
T Consensus        37 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~---~~~l~~L~~L~Ls~n~l~~l~~~-----~~L~~L~l~~  108 (317)
T 3o53_A           37 KELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD---LESLSTLRTLDLNNNYVQELLVG-----PSIETLHAAN  108 (317)
T ss_dssp             SEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE---ETTCTTCCEEECCSSEEEEEEEC-----TTCCEEECCS
T ss_pred             CEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh---hhhcCCCCEEECcCCccccccCC-----CCcCEEECCC
Confidence            677888888777663 22  3456778888888877654   77778888888888887776532     6777777777


Q ss_pred             CCCCccccccEEEccCCccccccccccceeeeeeccccCCccccceeecCCCCceeeccCCCC-CCCCCCCeEEecCCcc
Q psy15407        174 CPPKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSNFTF-SPLSKLSQLILSYNKL  252 (604)
Q Consensus       174 ~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~i~~l~~~~f-~~l~~L~~L~Ls~N~l  252 (604)
                      |.+.......    ......+.+..+.+......  .... ..+|++|+|++|+|+.+++..| ..+++|++|+|++|+|
T Consensus       109 n~l~~~~~~~----~~~L~~L~l~~N~l~~~~~~--~~~~-l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l  181 (317)
T 3o53_A          109 NNISRVSCSR----GQGKKNIYLANNKITMLRDL--DEGC-RSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI  181 (317)
T ss_dssp             SCCSEEEECC----CSSCEEEECCSSCCCSGGGB--CTGG-GSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCC
T ss_pred             CccCCcCccc----cCCCCEEECCCCCCCCccch--hhhc-cCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcC
Confidence            6543322100    01122222222222211100  0111 2378888999999888876665 4688899999999999


Q ss_pred             eeeeccccCCCCcccEEEccCCccccCCcccccCcccceeeeccCCCcc
Q psy15407        253 QCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIGGNPLY  301 (604)
Q Consensus       253 ~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~Npl~  301 (604)
                      +.++...  .+++|++|+|++|+|+.+++. |..+++|+.|+|++|.+.
T Consensus       182 ~~~~~~~--~l~~L~~L~Ls~N~l~~l~~~-~~~l~~L~~L~L~~N~l~  227 (317)
T 3o53_A          182 YDVKGQV--VFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLV  227 (317)
T ss_dssp             CEEECCC--CCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCC
T ss_pred             ccccccc--ccccCCEEECCCCcCCcchhh-hcccCcccEEECcCCccc
Confidence            8885443  478899999999999988876 778888999999998886

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.74  E-value=7.1e-18  Score=187.18  Aligned_cols=82  Identities=22%  Similarity=0.125  Sum_probs=44.9

Q ss_pred             cceeecCCCCceeeccCCCCCCCCCCCeEEe------cCCcceeeeccccCCCCcccEEEccCCccccCCcccccCcccc
Q psy15407        217 STMYRDLSNNQIGFLSNFTFSPLSKLSQLIL------SYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAI  290 (604)
Q Consensus       217 ~L~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L------s~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L  290 (604)
                      +|++|+|++|+|+.++. .+..+++|++|+|      ++|++....|..|..+++|++|+|++|+|+.||...+   ++|
T Consensus       514 ~L~~L~Ls~N~l~~ip~-~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ip~~~~---~~L  589 (636)
T 4eco_A          514 YLVGIDLSYNSFSKFPT-QPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKIT---PNI  589 (636)
T ss_dssp             TCCEEECCSSCCSSCCC-GGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCBCCSCCC---TTC
T ss_pred             CcCEEECCCCCCCCcCh-hhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcCCccCHhHh---CcC
Confidence            55555666666555432 3445556666655      3344444445555555666666666666655555432   455


Q ss_pred             eeeeccCCCccc
Q psy15407        291 THLAIGGNPLYC  302 (604)
Q Consensus       291 ~~L~L~~Npl~C  302 (604)
                      +.|+|++|+|.+
T Consensus       590 ~~L~Ls~N~l~~  601 (636)
T 4eco_A          590 SVLDIKDNPNIS  601 (636)
T ss_dssp             CEEECCSCTTCE
T ss_pred             CEEECcCCCCcc
Confidence            566666666554

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.73  E-value=1.4e-17  Score=164.72  Aligned_cols=170  Identities=21%  Similarity=0.255  Sum_probs=141.5

Q ss_pred             EEcCCCCCCcCCC-CCCccCcEEecCCCcceeecCCCccCCCCCCcEEeCCCCcceecCCCcCCCcccCCcCCCCCCCCC
Q psy15407         99 VDCSQRGLKEIPK-DIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDNYCPPK  177 (604)
Q Consensus        99 l~cs~~~L~~iP~-~l~~~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~l~~~~~~  177 (604)
                      +++..+.+..+.. .-...++.|++++|.|+.++.   |..+++|++|+|++|+|+.++  .|..+++|++|++++|.+.
T Consensus        24 l~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~---l~~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~L~~n~l~   98 (272)
T 3rfs_A           24 ANLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQG---IQYLPNVRYLALGGNKLHDIS--ALKELTNLTYLILTGNQLQ   98 (272)
T ss_dssp             HHHTCSCTTSEECHHHHTTCCEEECTTSCCCCCTT---GGGCTTCCEEECTTSCCCCCG--GGTTCTTCCEEECTTSCCC
T ss_pred             HHhcCcccccccccccccceeeeeeCCCCcccccc---cccCCCCcEEECCCCCCCCch--hhcCCCCCCEEECCCCccC
Confidence            3455555554422 124567999999999998853   889999999999999999874  7889999999999887543


Q ss_pred             ccccccEEEccCCccccccccccceeeeeeccccCCccccceeecCCCCceeeccCCCCCCCCCCCeEEecCCcceeeec
Q psy15407        178 CTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDR  257 (604)
Q Consensus       178 ~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~i~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~  257 (604)
                      .+..                           ..... ..+|++|+|++|+|+.+++..|..+++|++|+|++|+|+.+++
T Consensus        99 ~~~~---------------------------~~~~~-l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  150 (272)
T 3rfs_A           99 SLPN---------------------------GVFDK-LTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPK  150 (272)
T ss_dssp             CCCT---------------------------TTTTT-CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred             ccCh---------------------------hHhcC-CcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCH
Confidence            1110                           00011 2389999999999999999999999999999999999999999


Q ss_pred             cccCCCCcccEEEccCCccccCCcccccCcccceeeeccCCCcc
Q psy15407        258 DALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIGGNPLY  301 (604)
Q Consensus       258 ~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~Npl~  301 (604)
                      ..|..+++|+.|+|++|+|+.+++..|..+++|+.|+|++|.+.
T Consensus       151 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~  194 (272)
T 3rfs_A          151 GVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLK  194 (272)
T ss_dssp             TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred             HHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCC
Confidence            99999999999999999999999999999999999999999886

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.73  E-value=7.3e-18  Score=167.97  Aligned_cols=89  Identities=20%  Similarity=0.199  Sum_probs=75.6

Q ss_pred             ccceeecCCCCceeeccCCCCCCCCCCCeEEecCCcceeeeccccCCCCcccEEEccCCccccCCcccccCcccceeeec
Q psy15407        216 VSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAI  295 (604)
Q Consensus       216 ~~L~~L~Ls~N~i~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L  295 (604)
                      .+|++|+|++|+|+.+.+..|..+++|+.|+|++|+|+.+++..|..+++|+.|+|++|++....+. ...+..|+.+.+
T Consensus       177 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~-~~~~~~l~~~~~  255 (285)
T 1ozn_A          177 HSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRA-RPLWAWLQKFRG  255 (285)
T ss_dssp             TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGG-HHHHHHHHHCCS
T ss_pred             cccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCc-HHHHHHHHhccc
Confidence            4899999999999999999999999999999999999999988999999999999999999854331 122345677778


Q ss_pred             cCCCcccccC
Q psy15407        296 GGNPLYCDCG  305 (604)
Q Consensus       296 ~~Npl~CdC~  305 (604)
                      ..|.+.|.=.
T Consensus       256 ~~~~~~c~~p  265 (285)
T 1ozn_A          256 SSSEVPCSLP  265 (285)
T ss_dssp             EECCCBEEES
T ss_pred             ccCccccCCc
Confidence            8899988744

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.73  E-value=5.6e-18  Score=159.00  Aligned_cols=145  Identities=18%  Similarity=0.208  Sum_probs=110.1

Q ss_pred             CeEEcCCCCCCcCCCCC--CccCcEEecCCCcceeecCCCccCCCCCCcEEeCCCCcceecCCCcCCCcccCCcCCCCCC
Q psy15407         97 TRVDCSQRGLKEIPKDI--PLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDNYC  174 (604)
Q Consensus        97 ~~l~cs~~~L~~iP~~l--~~~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~l~~~  174 (604)
                      +.|+++++.|+.+| .+  ...+++|+|++|.++.++.   |..+++|++|+|++|+|+...+..|..++          
T Consensus        47 ~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~~~~---l~~l~~L~~L~l~~n~l~~~~~~~l~~l~----------  112 (197)
T 4ezg_A           47 TYITLANINVTDLT-GIEYAHNIKDLTINNIHATNYNP---ISGLSNLERLRIMGKDVTSDKIPNLSGLT----------  112 (197)
T ss_dssp             CEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCSCCGG---GTTCTTCCEEEEECTTCBGGGSCCCTTCT----------
T ss_pred             cEEeccCCCccChH-HHhcCCCCCEEEccCCCCCcchh---hhcCCCCCEEEeECCccCcccChhhcCCC----------
Confidence            56666667666666 33  3455667777776665542   66667777777777766665555555443          


Q ss_pred             CCCccccccEEEccCCccccccccccceeeeeeccccCCccccceeecCCCCceeeccCCCCCCCCCCCeEEecCCc-ce
Q psy15407        175 PPKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNK-LQ  253 (604)
Q Consensus       175 ~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~i~~l~~~~f~~l~~L~~L~Ls~N~-l~  253 (604)
                                                                +|++|+|++|+|+...+..|..+++|++|+|++|+ ++
T Consensus       113 ------------------------------------------~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~  150 (197)
T 4ezg_A          113 ------------------------------------------SLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT  150 (197)
T ss_dssp             ------------------------------------------TCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC
T ss_pred             ------------------------------------------CCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc
Confidence                                                      78889999999998666788999999999999998 88


Q ss_pred             eeeccccCCCCcccEEEccCCccccCCcccccCcccceeeeccCCCcc
Q psy15407        254 CIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIGGNPLY  301 (604)
Q Consensus       254 ~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~Npl~  301 (604)
                      .++  .|..+++|+.|+|++|+|+.++  .+..+++|+.|+|++|++.
T Consensus       151 ~~~--~l~~l~~L~~L~l~~n~i~~~~--~l~~l~~L~~L~l~~N~i~  194 (197)
T 4ezg_A          151 DIM--PLKTLPELKSLNIQFDGVHDYR--GIEDFPKLNQLYAFSQTIG  194 (197)
T ss_dssp             CCG--GGGGCSSCCEEECTTBCCCCCT--TGGGCSSCCEEEECBC---
T ss_pred             ccH--hhcCCCCCCEEECCCCCCcChH--HhccCCCCCEEEeeCcccC
Confidence            885  6889999999999999999987  5888999999999999863

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.73  E-value=2.1e-19  Score=181.70  Aligned_cols=192  Identities=14%  Similarity=0.016  Sum_probs=108.0

Q ss_pred             CeEEcCCCCCCcCCCCCCccCcEEecCCCcceeecCCCccC-------CCCCCcEEeCCCCcceecCCCcC--CCcccCC
Q psy15407         97 TRVDCSQRGLKEIPKDIPLYTTELILNDNEIGKIKSDGLFG-------RLPNLIKLDLRRNQVTGIEDNAF--EGENDQG  167 (604)
Q Consensus        97 ~~l~cs~~~L~~iP~~l~~~~~~L~L~~N~i~~i~~~~~f~-------~l~~L~~L~Ls~N~i~~i~~~~f--~~l~~L~  167 (604)
                      +.|+++++.+ .+|..++..++.|+|++|.|+.+.....+.       ++++|++|+|++|+|+...+..+  ..+++|+
T Consensus        46 ~~l~l~~n~l-~~p~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~  124 (312)
T 1wwl_A           46 EYLLKRVDTE-ADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLN  124 (312)
T ss_dssp             TTHHHHCCTT-CCCHHHHHHHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCS
T ss_pred             eeEeeccccc-ccHHHHHHHHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCcc
Confidence            5677778888 778878777888899998886643222233       68888888888888886544443  7888888


Q ss_pred             cCCCCCCCCCcc------------ccccEEEccCCccccccccccceeeeeeccccCCccccceeecCCCCceeec----
Q psy15407        168 CLGDNYCPPKCT------------CTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFL----  231 (604)
Q Consensus       168 ~L~l~~~~~~~~------------~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~i~~l----  231 (604)
                      .|+|++|.+...            ..++.+.+..+.........           ...+ .+|++|+|++|++...    
T Consensus       125 ~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~-----------~~~l-~~L~~L~Ls~N~l~~~~~~~  192 (312)
T 1wwl_A          125 ILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQ-----------VRVF-PALSTLDLSDNPELGERGLI  192 (312)
T ss_dssp             EEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTT-----------CCCC-SSCCEEECCSCTTCHHHHHH
T ss_pred             EEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHH-----------hccC-CCCCEEECCCCCcCcchHHH
Confidence            888888876543            44555555544322111000           0111 1455555555554321    


Q ss_pred             cCCCCCCCCCCCeEEecCCccee---eeccccCCCCcccEEEccCCccccCCc-ccccCcccceeeeccCCCcc
Q psy15407        232 SNFTFSPLSKLSQLILSYNKLQC---IDRDALAGLKSLRIISLHGNDISMIPE-GAFADLHAITHLAIGGNPLY  301 (604)
Q Consensus       232 ~~~~f~~l~~L~~L~Ls~N~l~~---i~~~~f~~l~~L~~L~Ls~N~l~~i~~-~~f~~l~~L~~L~L~~Npl~  301 (604)
                      ....|..+++|++|+|++|+|+.   ++...|..+++|++|+|++|+|+.+++ ..+..+++|+.|+|++|.+.
T Consensus       193 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~  266 (312)
T 1wwl_A          193 SALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK  266 (312)
T ss_dssp             HHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS
T ss_pred             HHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC
Confidence            11223445555555555555552   222333444555555555555554332 33444455555555555544

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.73  E-value=2.3e-17  Score=170.10  Aligned_cols=153  Identities=22%  Similarity=0.250  Sum_probs=131.5

Q ss_pred             CcEEecCCCcceeecCCCccCCCCCCcEEeCCCCcceecCCCcCC-CcccCCcCCCCCCCCCccccccEEEccCCccccc
Q psy15407        117 TTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFE-GENDQGCLGDNYCPPKCTCTVRVLFYDGRAGECY  195 (604)
Q Consensus       117 ~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~-~l~~L~~L~l~~~~~~~~~~l~~l~~~~~~~~~~  195 (604)
                      .+.+++++|.|+.||..  +.  +.|+.|+|++|+|+.+.+..|. ++.+|+.|+|++|.+..+..              
T Consensus        20 ~~~l~c~~~~l~~iP~~--~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~--------------   81 (361)
T 2xot_A           20 SNILSCSKQQLPNVPQS--LP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISS--------------   81 (361)
T ss_dssp             TTEEECCSSCCSSCCSS--CC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECT--------------
T ss_pred             CCEEEeCCCCcCccCcc--CC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccCh--------------
Confidence            36899999999999863  32  5689999999999999999998 99999999999876432110              


Q ss_pred             cccccceeeeeeccccCCccccceeecCCCCceeeccCCCCCCCCCCCeEEecCCcceeeeccccCCCCcccEEEccCCc
Q psy15407        196 IAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGND  275 (604)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~i~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~  275 (604)
                                   .....+ .+|++|+|++|+|+.+++..|..+++|++|+|++|+|+.+.+.+|..+++|+.|+|++|+
T Consensus        82 -------------~~~~~l-~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~  147 (361)
T 2xot_A           82 -------------EAFVPV-PNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQ  147 (361)
T ss_dssp             -------------TTTTTC-TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             -------------hhccCC-CCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCc
Confidence                         001111 389999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccCCcccc---cCcccceeeeccCCCcc
Q psy15407        276 ISMIPEGAF---ADLHAITHLAIGGNPLY  301 (604)
Q Consensus       276 l~~i~~~~f---~~l~~L~~L~L~~Npl~  301 (604)
                      |+.++...|   ..+++|+.|+|++|.+.
T Consensus       148 l~~l~~~~~~~~~~l~~L~~L~L~~N~l~  176 (361)
T 2xot_A          148 ISRFPVELIKDGNKLPKLMLLDLSSNKLK  176 (361)
T ss_dssp             CCSCCGGGTC----CTTCCEEECCSSCCC
T ss_pred             CCeeCHHHhcCcccCCcCCEEECCCCCCC
Confidence            999999888   56999999999999986

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.72  E-value=2e-17  Score=157.99  Aligned_cols=130  Identities=20%  Similarity=0.263  Sum_probs=118.6

Q ss_pred             CeEEcCCCCCCcCC-CCC---CccCcEEecCCCcceeecCCCccCCCCCCcEEeCCCCcceecCCCcCCCcccCCcCCCC
Q psy15407         97 TRVDCSQRGLKEIP-KDI---PLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDN  172 (604)
Q Consensus        97 ~~l~cs~~~L~~iP-~~l---~~~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~l~  172 (604)
                      +.|++++|+|+.++ ..+   ...+++|+|++|+|+.+++. .|.++++|++|+|++|+|+.+++.+|.+++        
T Consensus        35 ~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~--------  105 (220)
T 2v70_A           35 AELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEG-AFEGASGVNEILLTSNRLENVQHKMFKGLE--------  105 (220)
T ss_dssp             SEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTT-TTTTCTTCCEEECCSSCCCCCCGGGGTTCS--------
T ss_pred             CEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHH-HhCCCCCCCEEECCCCccCccCHhHhcCCc--------
Confidence            68999999999884 333   45789999999999999874 499999999999999999999999998775        


Q ss_pred             CCCCCccccccEEEccCCccccccccccceeeeeeccccCCccccceeecCCCCceeeccCCCCCCCCCCCeEEecCCcc
Q psy15407        173 YCPPKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKL  252 (604)
Q Consensus       173 ~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~i~~l~~~~f~~l~~L~~L~Ls~N~l  252 (604)
                                                                  +|++|+|++|+|+.+++..|..+++|++|+|++|+|
T Consensus       106 --------------------------------------------~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l  141 (220)
T 2v70_A          106 --------------------------------------------SLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQI  141 (220)
T ss_dssp             --------------------------------------------SCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCC
T ss_pred             --------------------------------------------CCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcC
Confidence                                                        788899999999999999999999999999999999


Q ss_pred             eeeeccccCCCCcccEEEccCCccccC
Q psy15407        253 QCIDRDALAGLKSLRIISLHGNDISMI  279 (604)
Q Consensus       253 ~~i~~~~f~~l~~L~~L~Ls~N~l~~i  279 (604)
                      +.+.+.+|..+++|+.|+|++|.|+..
T Consensus       142 ~~~~~~~~~~l~~L~~L~L~~N~l~c~  168 (220)
T 2v70_A          142 TTVAPGAFDTLHSLSTLNLLANPFNCN  168 (220)
T ss_dssp             CCBCTTTTTTCTTCCEEECCSCCEECS
T ss_pred             CEECHHHhcCCCCCCEEEecCcCCcCC
Confidence            999999999999999999999999843

>1yo8_A Thrombospondin-2; EGF, Ca(2+)-binding domains, lectin domain, disulfide, cell; HET: NAG MAN; 2.60A {Homo sapiens} PDB: 2rhp_A*

Probab=99.72  E-value=3e-17  Score=175.88  Aligned_cols=114  Identities=27%  Similarity=0.686  Sum_probs=62.1

Q ss_pred             CCcCCCCCCCCCcEEEeCCCC-eEE-ecCCCCCC--CCcccCCCcCCCCCCCCCCCC---ceeecCCCeEEe-cCCCCcC
Q psy15407        436 IDDCLSHKCENNATCVDLIQA-YEC-RCAPGFQG--EFCQTKTPFCAGEYNPCRNGA---RCLDHFSHYTCE-CTPGFSG  507 (604)
Q Consensus       436 ~~~C~~~~C~~~~~C~~~~~~-~~C-~C~~g~~g--~~C~~~~~~C~~~~~~C~~~~---~C~~~~~~~~C~-C~~g~~g  507 (604)
                      +++|..+||.++++|+++.++ |+| .|++||+|  ..|+ ++++|...++.|.+++   +|+++.++|+|. |++||+|
T Consensus         3 IDeC~~nPC~~gg~C~n~~~Gsy~C~~C~~GytGdg~~Ce-DiDEC~~~p~~C~~gg~~~~CvNt~gsY~C~~C~~Gy~G   81 (634)
T 1yo8_A            3 PDGCLSNPCFPGAQCSSFPDGSWSCGFCPVGFLGNGTHCE-DLDECALVPDICFSTSKVPRCVNTQPGFHCLPCPPRYRG   81 (634)
T ss_dssp             -CGGGGCCSCTTCCEEECTTSCEEECCCCTTBCSCSSSCC-BCCTTTTSCCCSCCCSSSCCEEECSSSEEECCCCTTEEE
T ss_pred             ccccCCCCCCCCCEEecCCCCCeECCcCCCccCCCCCCcc-ccccccCCCCcccCCccccceeeccCceecccCCCCccc
Confidence            344444444444444444422 444 44444444  3443 3444443333344444   444444445554 5555544


Q ss_pred             CcCc--------------ccCCCCCC--CCCCCCCEEeeCC----CCeEeeeCCCCcc--CCCCc
Q psy15407        508 VNCT--------------VNVDDCVN--HMCQNGGTCVDGI----NDYTCKCEGDFVG--KFCEI  550 (604)
Q Consensus       508 ~~c~--------------~~~~~C~~--~~C~~~~~C~~~~----~~y~C~C~~G~~G--~~C~~  550 (604)
                      ..|+              .++++|..  ++|.++++|++..    ++|+|.|++||+|  ..|+.
T Consensus        82 ~~c~g~g~~~~~~dg~~C~dideC~~~~~pC~~~~~Cvnt~~~~~GsY~C~C~~Gy~GdG~~Ce~  146 (634)
T 1yo8_A           82 NQPVGVGLEAAKTEKQVCEPENPCKDKTHNCHKHAECIYLGHFSDPMYKCECQTGYAGDGLICGE  146 (634)
T ss_dssp             CCCEESSSHHHHSCCCCEEECCTTTTTCCCCCTTEEEEECCTTCSSSEEEEECTTEEESSSSEEE
T ss_pred             CccccccccccccCCCcccccccccCCCcccccCccccccccccccceeeeccCCccccCccccc
Confidence            4432              35677764  4788888888877    7888888888876  56763

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.72  E-value=9.3e-18  Score=186.24  Aligned_cols=203  Identities=19%  Similarity=0.153  Sum_probs=121.5

Q ss_pred             CCeEEcCCCC-CC--cCCCCCC--------ccCcEEecCCCcceeecCCCccCCCCCCcEEeCCCCcce-ecCCCcCCCc
Q psy15407         96 GTRVDCSQRG-LK--EIPKDIP--------LYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVT-GIEDNAFEGE  163 (604)
Q Consensus        96 ~~~l~cs~~~-L~--~iP~~l~--------~~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~-~i~~~~f~~l  163 (604)
                      -+.|++++|+ |+  .+|..+.        ..+++|+|++|+|+.||..+.|.++++|++|+|++|+|+ .|+  .|..+
T Consensus       275 L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip--~~~~l  352 (636)
T 4eco_A          275 MQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP--AFGSE  352 (636)
T ss_dssp             CCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC--CCEEE
T ss_pred             CCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh--hhCCC
Confidence            3678888887 77  3776552        567888888888887765113778888888888888887 555  77777


Q ss_pred             ccCCcCCCCCCCCCc-------ccc-ccEEEccCCccccccccccce----ee----eeeccccC----C---------c
Q psy15407        164 NDQGCLGDNYCPPKC-------TCT-VRVLFYDGRAGECYIAVELFS----SR----IRVSYYVG----N---------Y  214 (604)
Q Consensus       164 ~~L~~L~l~~~~~~~-------~~~-l~~l~~~~~~~~~~~~~~~~~----~~----~~~~~~~~----~---------~  214 (604)
                      ++|+.|++++|.+..       ... ++.+.+..+... .++..+..    .+    .....+.+    .         .
T Consensus       353 ~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~  431 (636)
T 4eco_A          353 IKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFK  431 (636)
T ss_dssp             EEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCC
T ss_pred             CCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhccccccccc
Confidence            778888777764322       223 555555544322 11111000    00    00000000    0         1


Q ss_pred             cccceeecCCCCceeeccCCCCCCCCCCCeEEecCCcceeeeccccCCCC-------cccEEEccCCccccCCcccc-cC
Q psy15407        215 PVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLK-------SLRIISLHGNDISMIPEGAF-AD  286 (604)
Q Consensus       215 ~~~L~~L~Ls~N~i~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~-------~L~~L~Ls~N~l~~i~~~~f-~~  286 (604)
                      ..+|++|+|++|+|+.++...|..+++|++|+|++|+|+.++...|..+.       +|+.|+|++|+|+.||...+ ..
T Consensus       432 ~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~  511 (636)
T 4eco_A          432 GINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATT  511 (636)
T ss_dssp             CCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGSTTT
T ss_pred             CCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCCccChhhhhcc
Confidence            12566677777777666666666666777777777777766665555443       66777777777776665443 36


Q ss_pred             cccceeeeccCCCcc
Q psy15407        287 LHAITHLAIGGNPLY  301 (604)
Q Consensus       287 l~~L~~L~L~~Npl~  301 (604)
                      +++|+.|+|++|++.
T Consensus       512 l~~L~~L~Ls~N~l~  526 (636)
T 4eco_A          512 LPYLVGIDLSYNSFS  526 (636)
T ss_dssp             CTTCCEEECCSSCCS
T ss_pred             CCCcCEEECCCCCCC
Confidence            666777777777665

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.71  E-value=9.4e-18  Score=190.15  Aligned_cols=203  Identities=18%  Similarity=0.158  Sum_probs=122.8

Q ss_pred             CCeEEcCCCC-CCc--CCCCCC---------ccCcEEecCCCcceeecCCCccCCCCCCcEEeCCCCcceecCCCcCCCc
Q psy15407         96 GTRVDCSQRG-LKE--IPKDIP---------LYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGE  163 (604)
Q Consensus        96 ~~~l~cs~~~-L~~--iP~~l~---------~~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~l  163 (604)
                      -+.|++++|. |+.  +|..+.         ..++.|+|++|.|+.||..+.|.++++|++|+|++|+|+.|+  .|..+
T Consensus       517 L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp--~~~~L  594 (876)
T 4ecn_A          517 LQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLE--AFGTN  594 (876)
T ss_dssp             CCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCBCC--CCCTT
T ss_pred             CCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcccch--hhcCC
Confidence            3667777776 663  665431         256777777777776654112677777777777777777665  67777


Q ss_pred             ccCCcCCCCCCCCCcc-------cc-ccEEEccCCcccccccccc-------cee----eeeeccccC--------Cccc
Q psy15407        164 NDQGCLGDNYCPPKCT-------CT-VRVLFYDGRAGECYIAVEL-------FSS----RIRVSYYVG--------NYPV  216 (604)
Q Consensus       164 ~~L~~L~l~~~~~~~~-------~~-l~~l~~~~~~~~~~~~~~~-------~~~----~~~~~~~~~--------~~~~  216 (604)
                      ++|+.|+|++|.+..+       .. |+.+.+..+... .++..+       +..    ...+.....        ....
T Consensus       595 ~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~  673 (876)
T 4ecn_A          595 VKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGI  673 (876)
T ss_dssp             SEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCC
T ss_pred             CcceEEECcCCccccchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCC
Confidence            7777777777654322       23 555555544322 111100       000    000000000        0112


Q ss_pred             cceeecCCCCceeeccCCCCCCCCCCCeEEecCCcceeeeccccCCCC-------cccEEEccCCccccCCcccc-cCcc
Q psy15407        217 STMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLK-------SLRIISLHGNDISMIPEGAF-ADLH  288 (604)
Q Consensus       217 ~L~~L~Ls~N~i~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~-------~L~~L~Ls~N~l~~i~~~~f-~~l~  288 (604)
                      +|+.|+|++|+|+.++...|..+++|+.|+|++|+|+.++...|..+.       +|+.|+|++|+|+.||...+ ..++
T Consensus       674 ~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~l~  753 (876)
T 4ecn_A          674 NASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLP  753 (876)
T ss_dssp             CEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGSTTTCT
T ss_pred             CcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCccchHHhhhccCC
Confidence            677777777777777776666777777777777777777666665443       77777777777777776543 3677


Q ss_pred             cceeeeccCCCcc
Q psy15407        289 AITHLAIGGNPLY  301 (604)
Q Consensus       289 ~L~~L~L~~Npl~  301 (604)
                      +|+.|+|++|.+.
T Consensus       754 ~L~~L~Ls~N~L~  766 (876)
T 4ecn_A          754 YLSNMDVSYNCFS  766 (876)
T ss_dssp             TCCEEECCSSCCS
T ss_pred             CcCEEEeCCCCCC
Confidence            7777777777765

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.71  E-value=8.1e-18  Score=169.45  Aligned_cols=205  Identities=16%  Similarity=0.138  Sum_probs=116.3

Q ss_pred             CeEEcCCCCCCcCCCCC--CccCcEEecCCCcceeecCCCccCCCCCCcEEeCCCCcceecCCCcCCCcccCCcCCCCCC
Q psy15407         97 TRVDCSQRGLKEIPKDI--PLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDNYC  174 (604)
Q Consensus        97 ~~l~cs~~~L~~iP~~l--~~~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~l~~~  174 (604)
                      +.|++++|.++.+|..+  ...+++|+|++|.|+.++....|..+++|++|+|++|.|+.+.+.+|.++++|+.|++++|
T Consensus        81 ~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n  160 (306)
T 2z66_A           81 KYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGN  160 (306)
T ss_dssp             CEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTC
T ss_pred             CEEECCCCccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCC
Confidence            34444444444444332  2334445555555544433222444555555555555555554445555555555555444


Q ss_pred             CCCccccccEEEccCCccccccccccceeeeeeccccCCccccceeecCCCCceeeccCCCCCCCCCCCeEEecCCccee
Q psy15407        175 PPKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQC  254 (604)
Q Consensus       175 ~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~i~~l~~~~f~~l~~L~~L~Ls~N~l~~  254 (604)
                      .+........+....++..+.+..+.+....  ....... .+|++|+|++|+|+.+++..|..+++|++|+|++|+|+.
T Consensus       161 ~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~--~~~~~~l-~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~  237 (306)
T 2z66_A          161 SFQENFLPDIFTELRNLTFLDLSQCQLEQLS--PTAFNSL-SSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMT  237 (306)
T ss_dssp             EEGGGEECSCCTTCTTCCEEECTTSCCCEEC--TTTTTTC-TTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCB
T ss_pred             ccccccchhHHhhCcCCCEEECCCCCcCCcC--HHHhcCC-CCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcc
Confidence            3211000000000011111222222111110  1111222 389999999999999999899999999999999999999


Q ss_pred             eeccccCCCC-cccEEEccCCccccCCc--ccccCcccceeeeccCCCccccc
Q psy15407        255 IDRDALAGLK-SLRIISLHGNDISMIPE--GAFADLHAITHLAIGGNPLYCDC  304 (604)
Q Consensus       255 i~~~~f~~l~-~L~~L~Ls~N~l~~i~~--~~f~~l~~L~~L~L~~Npl~CdC  304 (604)
                      +.+..|..++ +|+.|+|++|+|+....  ....-+..++.+.+..+.+.|.-
T Consensus       238 ~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~  290 (306)
T 2z66_A          238 SKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECAT  290 (306)
T ss_dssp             CSSSSCCCCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGGCBEEE
T ss_pred             cCHHHHHhhhccCCEEEccCCCeecccChHHHHHHHHhhhhhhccccccccCC
Confidence            9999999984 99999999999986432  11233445566677788888864

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.70  E-value=2.1e-17  Score=180.99  Aligned_cols=164  Identities=25%  Similarity=0.233  Sum_probs=135.3

Q ss_pred             CeEEcCCCCCCcCCCCC--CccCcEEecCCCcceeecCCCccCCCCCCcEEeCCCCcceecCCCcCCCcccCCcCCCCCC
Q psy15407         97 TRVDCSQRGLKEIPKDI--PLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDNYC  174 (604)
Q Consensus        97 ~~l~cs~~~L~~iP~~l--~~~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~l~~~  174 (604)
                      +.|+++++.|+.+|. +  ...++.|+|++|.|+.+++   |..|++|+.|+|++|+|+.++  .|..+++|+.|+|++|
T Consensus        46 ~~L~l~~n~i~~l~~-l~~l~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~Ls~N  119 (605)
T 1m9s_A           46 DQIIANNSDIKSVQG-IQYLPNVTKLFLNGNKLTDIKP---LTNLKNLGWLFLDENKIKDLS--SLKDLKKLKSLSLEHN  119 (605)
T ss_dssp             CCCBCTTCCCCCCTT-GGGCTTCCEEECTTSCCCCCGG---GGGCTTCCEEECCSSCCCCCT--TSTTCTTCCEEECTTS
T ss_pred             CEEECcCCCCCCChH-HccCCCCCEEEeeCCCCCCChh---hccCCCCCEEECcCCCCCCCh--hhccCCCCCEEEecCC
Confidence            678888999988874 4  5678999999999988875   888999999999999998875  5888888888888887


Q ss_pred             CCCccccccEEEccCCccccccccccceeeeeeccccCCccccceeecCCCCceeeccCCCCCCCCCCCeEEecCCccee
Q psy15407        175 PPKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQC  254 (604)
Q Consensus       175 ~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~i~~l~~~~f~~l~~L~~L~Ls~N~l~~  254 (604)
                      .+..+..                             ... ..+|+.|+|++|+|+.+  ..|..+++|+.|+|++|+|+.
T Consensus       120 ~l~~l~~-----------------------------l~~-l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~  167 (605)
T 1m9s_A          120 GISDING-----------------------------LVH-LPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISD  167 (605)
T ss_dssp             CCCCCGG-----------------------------GGG-CTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCC
T ss_pred             CCCCCcc-----------------------------ccC-CCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCC
Confidence            6542211                             011 13899999999999988  468889999999999999999


Q ss_pred             eeccccCCCCcccEEEccCCccccCCcccccCcccceeeeccCCCccc
Q psy15407        255 IDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIGGNPLYC  302 (604)
Q Consensus       255 i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~Npl~C  302 (604)
                      +++  |..+++|+.|+|++|+|+.++  .|..+++|+.|+|++|++.-
T Consensus       168 ~~~--l~~l~~L~~L~Ls~N~i~~l~--~l~~l~~L~~L~L~~N~l~~  211 (605)
T 1m9s_A          168 IVP--LAGLTKLQNLYLSKNHISDLR--ALAGLKNLDVLELFSQECLN  211 (605)
T ss_dssp             CGG--GTTCTTCCEEECCSSCCCBCG--GGTTCTTCSEEECCSEEEEC
T ss_pred             chh--hccCCCCCEEECcCCCCCCCh--HHccCCCCCEEEccCCcCcC
Confidence            876  889999999999999999985  48889999999999998864

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.70  E-value=1e-16  Score=169.93  Aligned_cols=178  Identities=21%  Similarity=0.151  Sum_probs=118.0

Q ss_pred             CeEEcCCCCCCcCCCC-C--CccCcEEecCCCcceeecCCCccCCCCCCcEEeCCCCcceecCCCcCCCcccCCcCCCCC
Q psy15407         97 TRVDCSQRGLKEIPKD-I--PLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDNY  173 (604)
Q Consensus        97 ~~l~cs~~~L~~iP~~-l--~~~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~l~~  173 (604)
                      +.|++++|.|+.++.. +  ...+++|+|++|+|+.+++. .|..+++|++|+|++|+|+.+++.+|..+++|+.|+|++
T Consensus        91 ~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~  169 (440)
T 3zyj_A           91 EILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNG-AFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGE  169 (440)
T ss_dssp             CEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTT-TSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCC
T ss_pred             CEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHh-HhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCC
Confidence            5666666666665532 2  24456666666666666542 366666666666666666666666666666666666665


Q ss_pred             CC---------CCccccccEEEccCCcc-------------ccccccccceeeeeeccccCCccccceeecCCCCceeec
Q psy15407        174 CP---------PKCTCTVRVLFYDGRAG-------------ECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFL  231 (604)
Q Consensus       174 ~~---------~~~~~~l~~l~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~i~~l  231 (604)
                      +.         +..+..|+.+.+..+..             .+.+..+.+....  ......+ .+|+.|+|++|+|+.+
T Consensus       170 ~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~--~~~~~~l-~~L~~L~L~~n~l~~~  246 (440)
T 3zyj_A          170 LKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAIR--PGSFQGL-MHLQKLWMIQSQIQVI  246 (440)
T ss_dssp             CTTCCEECTTTTTTCSSCCEEECTTSCCSSCCCCTTCSSCCEEECTTSCCCEEC--TTTTTTC-TTCCEEECTTCCCCEE
T ss_pred             CCCcceeCcchhhcccccCeecCCCCcCccccccCCCcccCEEECCCCccCccC--hhhhccC-ccCCEEECCCCceeEE
Confidence            31         22334455555543322             2222222221110  0111122 3899999999999999


Q ss_pred             cCCCCCCCCCCCeEEecCCcceeeeccccCCCCcccEEEccCCcccc
Q psy15407        232 SNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISM  278 (604)
Q Consensus       232 ~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~  278 (604)
                      ++..|..+++|++|+|++|+|+.+++..|..+++|+.|+|++|.+.-
T Consensus       247 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~C  293 (440)
T 3zyj_A          247 ERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNC  293 (440)
T ss_dssp             CTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEEC
T ss_pred             ChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccC
Confidence            99999999999999999999999999999999999999999999863

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.70  E-value=8.3e-18  Score=180.41  Aligned_cols=180  Identities=18%  Similarity=0.200  Sum_probs=114.0

Q ss_pred             ccCcEEecCCCcceeecCCCccCCCCCCcEEeCCCCcceecCCCcCCCcccCCcCCCCCCCCCcc---ccccEEEccCCc
Q psy15407        115 LYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDNYCPPKCT---CTVRVLFYDGRA  191 (604)
Q Consensus       115 ~~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~l~~~~~~~~---~~l~~l~~~~~~  191 (604)
                      ..+++|+|++|.|+.+++. .|..+++|++|+|++|.|+.+.+  |..+++|+.|+|++|.+..+   ..+..+.+..+.
T Consensus        34 ~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~~~~L~~L~L~~N~  110 (487)
T 3oja_A           34 WNVKELDLSGNPLSQISAA-DLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNN  110 (487)
T ss_dssp             GGCCEEECCSSCCCCCCGG-GGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEECTTCCEEECCSSC
T ss_pred             CCccEEEeeCCcCCCCCHH-HHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCCCCCcCEEECcCCc
Confidence            3789999999999999764 49999999999999999998876  99999999999999865433   344555554433


Q ss_pred             ccccccccc------ceeeeeeccc----cCCccccceeecCCCCceeeccCCCCC-CCCCCCeEEecCCcceeeecccc
Q psy15407        192 GECYIAVEL------FSSRIRVSYY----VGNYPVSTMYRDLSNNQIGFLSNFTFS-PLSKLSQLILSYNKLQCIDRDAL  260 (604)
Q Consensus       192 ~~~~~~~~~------~~~~~~~~~~----~~~~~~~L~~L~Ls~N~i~~l~~~~f~-~l~~L~~L~Ls~N~l~~i~~~~f  260 (604)
                      ........+      ......+...    .+. ..+|++|+|++|.|+.+++..|. .+++|+.|+|++|.|+.+++.. 
T Consensus       111 l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~-l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~~~-  188 (487)
T 3oja_A          111 ISRVSCSRGQGKKNIYLANNKITMLRDLDEGC-RSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQV-  188 (487)
T ss_dssp             CCCEEECCCSSCEEEECCSSCCCSGGGBCGGG-GSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCC-
T ss_pred             CCCCCccccCCCCEEECCCCCCCCCCchhhcC-CCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccccccc-
Confidence            221111000      0000000000    011 12566666666666665554543 5666666666666666664322 


Q ss_pred             CCCCcccEEEccCCccccCCcccccCcccceeeeccCCCcc
Q psy15407        261 AGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIGGNPLY  301 (604)
Q Consensus       261 ~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~Npl~  301 (604)
                       .+++|+.|+|++|.|+.+++. |..+++|+.|+|++|.+.
T Consensus       189 -~l~~L~~L~Ls~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~  227 (487)
T 3oja_A          189 -VFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLV  227 (487)
T ss_dssp             -CCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCC
T ss_pred             -cCCCCCEEECCCCCCCCCCHh-HcCCCCccEEEecCCcCc
Confidence             366666666666666666654 556666666666666655

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.70  E-value=1.2e-16  Score=171.44  Aligned_cols=231  Identities=18%  Similarity=0.145  Sum_probs=155.7

Q ss_pred             CCeEEcCCCCCCcCCCCC---CccCcEEecCCCcceeecCCCccCCCCCCcEEeCCCCcceecCCCcCCCcccCCcCCCC
Q psy15407         96 GTRVDCSQRGLKEIPKDI---PLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDN  172 (604)
Q Consensus        96 ~~~l~cs~~~L~~iP~~l---~~~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~l~  172 (604)
                      -+.|++++|.|+.+|..+   ...+++|+|++|.|+.+.+. .|..+++|++|+|++|.|+.+.+.+|.++++|+.|+|+
T Consensus        82 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  160 (477)
T 2id5_A           82 LRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDY-MFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLE  160 (477)
T ss_dssp             CCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTT-TTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEE
T ss_pred             CCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChh-HccccccCCEEECCCCccceeChhhccCCCCCCEEECC
Confidence            378899999999888754   35678899999998888664 48888888888888888888888888888888888777


Q ss_pred             CCCCCcc--------ccccEE------------------------EccCC---------------cccccccccccee--
Q psy15407        173 YCPPKCT--------CTVRVL------------------------FYDGR---------------AGECYIAVELFSS--  203 (604)
Q Consensus       173 ~~~~~~~--------~~l~~l------------------------~~~~~---------------~~~~~~~~~~~~~--  203 (604)
                      +|.+..+        ..++.+                        .+..+               +..+.+..+.+..  
T Consensus       161 ~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~  240 (477)
T 2id5_A          161 KCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVP  240 (477)
T ss_dssp             SCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCC
T ss_pred             CCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccC
Confidence            7643221        122222                        22211               1111111111100  


Q ss_pred             ----------------eeeeccc----cCCccccceeecCCCCceeeccCCCCCCCCCCCeEEecCCcceeeeccccCCC
Q psy15407        204 ----------------RIRVSYY----VGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGL  263 (604)
Q Consensus       204 ----------------~~~~~~~----~~~~~~~L~~L~Ls~N~i~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l  263 (604)
                                      ...+..+    .... .+|+.|+|++|+|+.+.+..|..+++|++|+|++|+|+.+++..|..+
T Consensus       241 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l  319 (477)
T 2id5_A          241 YLAVRHLVYLRFLNLSYNPISTIEGSMLHEL-LRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSV  319 (477)
T ss_dssp             HHHHTTCTTCCEEECCSSCCCEECTTSCTTC-TTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCG
T ss_pred             HHHhcCccccCeeECCCCcCCccChhhcccc-ccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCC
Confidence                            0111111    1122 489999999999999999999999999999999999999999999999


Q ss_pred             CcccEEEccCCccccCCcccccCcccceeeeccCCCcccccCCCccccccccccc--cCCccccCCCC
Q psy15407        264 KSLRIISLHGNDISMIPEGAFADLHAITHLAIGGNPLYCDCGLAWLSEWVKRDYV--EPGIARCTEPA  329 (604)
Q Consensus       264 ~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~Npl~CdC~l~~l~~~~~~~~~--~~~~~~C~~P~  329 (604)
                      ++|+.|+|++|.++..... ..-+..+..+.+.++.+.|.....+-...+.....  ......|..|.
T Consensus       320 ~~L~~L~l~~N~l~c~c~~-~~~~~~~~~~~~~~~~~~C~~p~~~~g~~l~~~~~~~~~~~~~C~~P~  386 (477)
T 2id5_A          320 GNLETLILDSNPLACDCRL-LWVFRRRWRLNFNRQQPTCATPEFVQGKEFKDFPDVLLPNYFTCRRAR  386 (477)
T ss_dssp             GGCCEEECCSSCEECSGGG-HHHHTTTTSSCCTTCCCBEEESGGGTTCBGGGSCSSCCTTSSCCEEEE
T ss_pred             cccCEEEccCCCccCccch-HhHHhhhhccccCccCceeCCchHHcCCchhhCccccccceeEecccc
Confidence            9999999999999854321 11122344567788999998875544443332111  12335666553

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.70  E-value=9.6e-18  Score=153.10  Aligned_cols=138  Identities=23%  Similarity=0.221  Sum_probs=107.5

Q ss_pred             cCCCCCCccCcEEecCCCcce--eecCCCccCCCCCCcEEeCCCCcceecCCCcCCCcccCCcCCCCCCCCCccccccEE
Q psy15407        108 EIPKDIPLYTTELILNDNEIG--KIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDNYCPPKCTCTVRVL  185 (604)
Q Consensus       108 ~iP~~l~~~~~~L~L~~N~i~--~i~~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~l~~~~~~~~~~l~~l  185 (604)
                      .++...+..+++|+|++|.|+  .|+..  |..+++|++|+|++|.|+.+  ..|..++                     
T Consensus        17 ~~~~~~~~~L~~L~l~~n~l~~~~i~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~---------------------   71 (168)
T 2ell_A           17 ELRNRTPAAVRELVLDNCKSNDGKIEGL--TAEFVNLEFLSLINVGLISV--SNLPKLP---------------------   71 (168)
T ss_dssp             HHTTSCTTSCSEEECCSCBCBTTBCSSC--CGGGGGCCEEEEESSCCCCC--SSCCCCS---------------------
T ss_pred             hhccCCcccCCEEECCCCCCChhhHHHH--HHhCCCCCEEeCcCCCCCCh--hhhccCC---------------------
Confidence            345566788899999999998  78653  78899999999999999888  5565554                     


Q ss_pred             EccCCccccccccccceeeeeeccccCCccccceeecCCCCceeeccCCCCCCCCCCCeEEecCCcceeeec-cccCCCC
Q psy15407        186 FYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDR-DALAGLK  264 (604)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~i~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~-~~f~~l~  264 (604)
                                                     +|++|+|++|+|+.+.+..+..+++|++|+|++|+|+.++. ..|..++
T Consensus        72 -------------------------------~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~  120 (168)
T 2ell_A           72 -------------------------------KLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLE  120 (168)
T ss_dssp             -------------------------------SCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCS
T ss_pred             -------------------------------CCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCC
Confidence                                           67777788888877555566668888888888888888753 6777888


Q ss_pred             cccEEEccCCccccCCc---ccccCcccceeeeccCCCcc
Q psy15407        265 SLRIISLHGNDISMIPE---GAFADLHAITHLAIGGNPLY  301 (604)
Q Consensus       265 ~L~~L~Ls~N~l~~i~~---~~f~~l~~L~~L~L~~Npl~  301 (604)
                      +|++|+|++|+|+.+++   ..|..+++|+.|++++|++.
T Consensus       121 ~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~  160 (168)
T 2ell_A          121 CLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ  160 (168)
T ss_dssp             CCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred             CCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence            88888888888888776   56777888888888887753

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.69  E-value=7.2e-17  Score=155.23  Aligned_cols=127  Identities=26%  Similarity=0.331  Sum_probs=117.5

Q ss_pred             cEEecCCCcceeecCCCccCCCCCCcEEeCCCCcceecCCCcCCCcccCCcCCCCCCCCCccccccEEEccCCccccccc
Q psy15407        118 TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDNYCPPKCTCTVRVLFYDGRAGECYIA  197 (604)
Q Consensus       118 ~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~l~~~~~~~~~~l~~l~~~~~~~~~~~~  197 (604)
                      +.++.+++.|+.||..  +  .++|++|+|++|+|+.+.+.+|.+++                                 
T Consensus        22 ~~v~c~~~~l~~ip~~--~--~~~L~~L~Ls~n~i~~~~~~~~~~l~---------------------------------   64 (229)
T 3e6j_A           22 TTVDCRSKRHASVPAG--I--PTNAQILYLHDNQITKLEPGVFDSLI---------------------------------   64 (229)
T ss_dssp             TEEECTTSCCSSCCSC--C--CTTCSEEECCSSCCCCCCTTTTTTCT---------------------------------
T ss_pred             CEeEccCCCcCccCCC--C--CCCCCEEEcCCCccCccCHHHhhCcc---------------------------------
Confidence            7899999999999863  3  38999999999999999999888765                                 


Q ss_pred             cccceeeeeeccccCCccccceeecCCCCceeeccCCCCCCCCCCCeEEecCCcceeeeccccCCCCcccEEEccCCccc
Q psy15407        198 VELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDIS  277 (604)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~i~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~  277 (604)
                                         +|++|+|++|+|+.+++..|..+++|++|+|++|+|+.+++..|..+++|++|+|++|+|+
T Consensus        65 -------------------~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~  125 (229)
T 3e6j_A           65 -------------------NLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT  125 (229)
T ss_dssp             -------------------TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             -------------------CCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc
Confidence                               7888999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCcccccCcccceeeeccCCCcc
Q psy15407        278 MIPEGAFADLHAITHLAIGGNPLY  301 (604)
Q Consensus       278 ~i~~~~f~~l~~L~~L~L~~Npl~  301 (604)
                      .||.. +..+++|+.|+|++|.+.
T Consensus       126 ~lp~~-~~~l~~L~~L~L~~N~l~  148 (229)
T 3e6j_A          126 ELPRG-IERLTHLTHLALDQNQLK  148 (229)
T ss_dssp             SCCTT-GGGCTTCSEEECCSSCCC
T ss_pred             ccCcc-cccCCCCCEEECCCCcCC
Confidence            99875 688999999999999987

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.69  E-value=2.6e-17  Score=168.80  Aligned_cols=186  Identities=15%  Similarity=0.141  Sum_probs=125.5

Q ss_pred             CCeEEcCCCCCCcCCCCC--CccCcEEecCCCcceeecCCCccCCCCCCcEEeCCCCcceecCCCcCCCcccCCcCCCCC
Q psy15407         96 GTRVDCSQRGLKEIPKDI--PLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDNY  173 (604)
Q Consensus        96 ~~~l~cs~~~L~~iP~~l--~~~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~l~~  173 (604)
                      -+.|+++++.....+..+  ...+++|+|++|.+..++.   |..+++|++|+|++|.|+.+++  |..+++|+.|++++
T Consensus       134 L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~---~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~  208 (347)
T 4fmz_A          134 MYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP---IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYV  208 (347)
T ss_dssp             CCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG---GGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCS
T ss_pred             eeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchh---hccCCCCCEEEccCCccccccc--ccCCCccceeeccc
Confidence            367888888444333223  4567888888888888764   7888888888888888888766  77788888888887


Q ss_pred             CCCCccc------cccEEEccCCccccccccccceeeeeeccccCCccccceeecCCCCceeeccCCCCCCCCCCCeEEe
Q psy15407        174 CPPKCTC------TVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLIL  247 (604)
Q Consensus       174 ~~~~~~~------~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L  247 (604)
                      |......      .++.+.+..+         .+.....    .... .+|++|+|++|.|+.++  .|..+++|++|+|
T Consensus       209 n~l~~~~~~~~~~~L~~L~l~~n---------~l~~~~~----~~~l-~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~l  272 (347)
T 4fmz_A          209 NQITDITPVANMTRLNSLKIGNN---------KITDLSP----LANL-SQLTWLEIGTNQISDIN--AVKDLTKLKMLNV  272 (347)
T ss_dssp             SCCCCCGGGGGCTTCCEEECCSS---------CCCCCGG----GTTC-TTCCEEECCSSCCCCCG--GGTTCTTCCEEEC
T ss_pred             CCCCCCchhhcCCcCCEEEccCC---------ccCCCcc----hhcC-CCCCEEECCCCccCCCh--hHhcCCCcCEEEc
Confidence            7654332      2333333332         2211111    1111 36777777777777763  4677777777777


Q ss_pred             cCCcceeeeccccCCCCcccEEEccCCccccCCcccccCcccceeeeccCCCccccc
Q psy15407        248 SYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIGGNPLYCDC  304 (604)
Q Consensus       248 s~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~Npl~CdC  304 (604)
                      ++|+|+.+  ..|..+++|+.|+|++|+|+.+++..|..+++|+.|+|++|++.-.-
T Consensus       273 ~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~  327 (347)
T 4fmz_A          273 GSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIR  327 (347)
T ss_dssp             CSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCG
T ss_pred             cCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCcccccc
Confidence            77777776  34677777777777777777777767777777777777777776443

>1yo8_A Thrombospondin-2; EGF, Ca(2+)-binding domains, lectin domain, disulfide, cell; HET: NAG MAN; 2.60A {Homo sapiens} PDB: 2rhp_A*

Probab=99.69  E-value=5.5e-17  Score=173.86  Aligned_cols=121  Identities=28%  Similarity=0.776  Sum_probs=60.0

Q ss_pred             CCCCCCCCCCCCCeeeeCCCCceEe-eCCCCCcC--CCCCcCCCcCCCCC--CCCCc---EEEeCCCCeEEe-cCCCCCC
Q psy15407        397 IDACYGNPCRNSGTCKLLEEGRFNC-ECAPGYTG--DRCEINIDDCLSHK--CENNA---TCVDLIQAYECR-CAPGFQG  467 (604)
Q Consensus       397 ~~~C~~~~C~~~~~C~~~~~~~~~C-~C~~g~~g--~~C~~~~~~C~~~~--C~~~~---~C~~~~~~~~C~-C~~g~~g  467 (604)
                      +++|..+||.++++|++...++|+| .|++||+|  ..|+ ++++|...+  |.+++   +|+++.++|+|. |++||+|
T Consensus         3 IDeC~~nPC~~gg~C~n~~~Gsy~C~~C~~GytGdg~~Ce-DiDEC~~~p~~C~~gg~~~~CvNt~gsY~C~~C~~Gy~G   81 (634)
T 1yo8_A            3 PDGCLSNPCFPGAQCSSFPDGSWSCGFCPVGFLGNGTHCE-DLDECALVPDICFSTSKVPRCVNTQPGFHCLPCPPRYRG   81 (634)
T ss_dssp             -CGGGGCCSCTTCCEEECTTSCEEECCCCTTBCSCSSSCC-BCCTTTTSCCCSCCCSSSCCEEECSSSEEECCCCTTEEE
T ss_pred             ccccCCCCCCCCCEEecCCCCCeECCcCCCccCCCCCCcc-ccccccCCCCcccCCccccceeeccCceecccCCCCccc
Confidence            3444444454444554432233455 45555544  3443 444554444  54444   455555555554 5555544


Q ss_pred             CCcc--------------cCCCcCCCCCCCCCCCCceeecC----CCeEEecCCCCcC--CcCcc--cCCCCC
Q psy15407        468 EFCQ--------------TKTPFCAGEYNPCRNGARCLDHF----SHYTCECTPGFSG--VNCTV--NVDDCV  518 (604)
Q Consensus       468 ~~C~--------------~~~~~C~~~~~~C~~~~~C~~~~----~~~~C~C~~g~~g--~~c~~--~~~~C~  518 (604)
                      ..|+              ..+++|....++|.++++|++..    ++|+|.|++||+|  ..|+.  ++++|.
T Consensus        82 ~~c~g~g~~~~~~dg~~C~dideC~~~~~pC~~~~~Cvnt~~~~~GsY~C~C~~Gy~GdG~~Ce~d~DiDeC~  154 (634)
T 1yo8_A           82 NQPVGVGLEAAKTEKQVCEPENPCKDKTHNCHKHAECIYLGHFSDPMYKCECQTGYAGDGLICGEDSDLDGWP  154 (634)
T ss_dssp             CCCEESSSHHHHSCCCCEEECCTTTTTCCCCCTTEEEEECCTTCSSSEEEEECTTEEESSSSEEECTTSSSSC
T ss_pred             CccccccccccccCCCcccccccccCCCcccccCccccccccccccceeeeccCCccccCcccccccCccccc
Confidence            4332              23455554445566666666655    5666666666655  45542  455553

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.69  E-value=1.8e-16  Score=168.70  Aligned_cols=179  Identities=20%  Similarity=0.140  Sum_probs=130.5

Q ss_pred             CeEEcCCCCCCcCCCC-C--CccCcEEecCCCcceeecCCCccCCCCCCcEEeCCCCcceecCCCcCCCcccCCcCCCCC
Q psy15407         97 TRVDCSQRGLKEIPKD-I--PLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDNY  173 (604)
Q Consensus        97 ~~l~cs~~~L~~iP~~-l--~~~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~l~~  173 (604)
                      +.|++++|.|+.++.. +  ...+++|+|++|+|+.+++. +|..+++|++|+|++|+|+.+++.+|..+++|+.|++++
T Consensus       102 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~  180 (452)
T 3zyi_A          102 EVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSG-AFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGE  180 (452)
T ss_dssp             CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTT-TSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCC
T ss_pred             CEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChh-hhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCC
Confidence            6788888888877643 3  34567888888888877663 477788888888888888888777777777777777776


Q ss_pred             CC---------CCccccccEEEccCCccc-------------cccccccceeeeeeccccCCccccceeecCCCCceeec
Q psy15407        174 CP---------PKCTCTVRVLFYDGRAGE-------------CYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFL  231 (604)
Q Consensus       174 ~~---------~~~~~~l~~l~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~i~~l  231 (604)
                      +.         +..+..|+.+.+..+...             +.+..+.+....  ......+ .+|+.|+|++|+|+.+
T Consensus       181 ~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~--~~~~~~l-~~L~~L~L~~n~l~~~  257 (452)
T 3zyi_A          181 LKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEIR--PGSFHGL-SSLKKLWVMNSQVSLI  257 (452)
T ss_dssp             CTTCCEECTTTTTTCTTCCEEECTTSCCSSCCCCTTCTTCCEEECTTSCCSEEC--GGGGTTC-TTCCEEECTTSCCCEE
T ss_pred             CCCccccChhhccCCCCCCEEECCCCcccccccccccccccEEECcCCcCcccC--cccccCc-cCCCEEEeCCCcCceE
Confidence            42         333445666666544322             222222221111  1111222 3899999999999999


Q ss_pred             cCCCCCCCCCCCeEEecCCcceeeeccccCCCCcccEEEccCCccccC
Q psy15407        232 SNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMI  279 (604)
Q Consensus       232 ~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i  279 (604)
                      .+..|..+++|+.|+|++|+|+.+++..|..+++|+.|+|++|.+.--
T Consensus       258 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~Cd  305 (452)
T 3zyi_A          258 ERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCD  305 (452)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECS
T ss_pred             CHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCC
Confidence            999999999999999999999999999999999999999999998743

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.69  E-value=2.7e-16  Score=167.14  Aligned_cols=176  Identities=18%  Similarity=0.144  Sum_probs=118.6

Q ss_pred             CeEEcCCCCCCcCCCCCCccCcEEecCCCcceeecCCCccCCCCCCcEEeCCCCcceecCCCcCCCcccCCcCCCCCCCC
Q psy15407         97 TRVDCSQRGLKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDNYCPP  176 (604)
Q Consensus        97 ~~l~cs~~~L~~iP~~l~~~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~l~~~~~  176 (604)
                      +.|++++|.|+.+|-.-...+++|+|++|.|+.++    |..+++|++|+|++|+|+.++   |..+++|+.|++++|.+
T Consensus        67 ~~L~Ls~n~l~~~~~~~l~~L~~L~Ls~N~l~~~~----~~~l~~L~~L~L~~N~l~~l~---~~~l~~L~~L~l~~N~l  139 (457)
T 3bz5_A           67 TKLICTSNNITTLDLSQNTNLTYLACDSNKLTNLD----VTPLTKLTYLNCDTNKLTKLD---VSQNPLLTYLNCARNTL  139 (457)
T ss_dssp             SEEECCSSCCSCCCCTTCTTCSEEECCSSCCSCCC----CTTCTTCCEEECCSSCCSCCC---CTTCTTCCEEECTTSCC
T ss_pred             CEEEccCCcCCeEccccCCCCCEEECcCCCCceee----cCCCCcCCEEECCCCcCCeec---CCCCCcCCEEECCCCcc
Confidence            67777777777776433556677777777777762    677777777777777777763   67777777777777654


Q ss_pred             Ccc-----ccccEEEccCCccccccccccceeeeeeccccCCccccceeecCCCCceeeccCCCCCCCCCCCeEEecCCc
Q psy15407        177 KCT-----CTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNK  251 (604)
Q Consensus       177 ~~~-----~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~i~~l~~~~f~~l~~L~~L~Ls~N~  251 (604)
                      ..+     ..++.+.+..+.         ......    ... ..+|++|+|++|+|+.++   +..+++|+.|+|++|+
T Consensus       140 ~~l~l~~l~~L~~L~l~~n~---------~~~~~~----~~~-l~~L~~L~ls~n~l~~l~---l~~l~~L~~L~l~~N~  202 (457)
T 3bz5_A          140 TEIDVSHNTQLTELDCHLNK---------KITKLD----VTP-QTQLTTLDCSFNKITELD---VSQNKLLNRLNCDTNN  202 (457)
T ss_dssp             SCCCCTTCTTCCEEECTTCS---------CCCCCC----CTT-CTTCCEEECCSSCCCCCC---CTTCTTCCEEECCSSC
T ss_pred             ceeccccCCcCCEEECCCCC---------cccccc----ccc-CCcCCEEECCCCccceec---cccCCCCCEEECcCCc
Confidence            432     223333332221         111111    111 237888888888888775   6777888888888888


Q ss_pred             ceeeeccccCCCCcccEEEccCCccccCCcccccCcccceeeeccCCCccc
Q psy15407        252 LQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIGGNPLYC  302 (604)
Q Consensus       252 l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~Npl~C  302 (604)
                      |+.+   .|..+++|+.|+|++|+|+.+|   +..+++|+.|+|++|++.-
T Consensus       203 l~~~---~l~~l~~L~~L~Ls~N~l~~ip---~~~l~~L~~L~l~~N~l~~  247 (457)
T 3bz5_A          203 ITKL---DLNQNIQLTFLDCSSNKLTEID---VTPLTQLTYFDCSVNPLTE  247 (457)
T ss_dssp             CSCC---CCTTCTTCSEEECCSSCCSCCC---CTTCTTCSEEECCSSCCSC
T ss_pred             CCee---ccccCCCCCEEECcCCcccccC---ccccCCCCEEEeeCCcCCC
Confidence            8877   3777788888888888888876   6677788888888887753

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.69  E-value=1.9e-16  Score=168.29  Aligned_cols=174  Identities=21%  Similarity=0.227  Sum_probs=141.6

Q ss_pred             CeEEcCCCCCCcCCCCC--CccCcEEecCCCcceeecCCCccCCCCCCcEEeCCCCcceecCCCcCCCcccCCcCCCCCC
Q psy15407         97 TRVDCSQRGLKEIPKDI--PLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDNYC  174 (604)
Q Consensus        97 ~~l~cs~~~L~~iP~~l--~~~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~l~~~  174 (604)
                      +.|+++++.|+.+| .+  ...+++|+|++|+|+.++    |..+++|++|+|++|+|+.++   |..+++|+.|++++|
T Consensus        45 ~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n~l~~~~----~~~l~~L~~L~Ls~N~l~~~~---~~~l~~L~~L~L~~N  116 (457)
T 3bz5_A           45 TSLDCHNSSITDMT-GIEKLTGLTKLICTSNNITTLD----LSQNTNLTYLACDSNKLTNLD---VTPLTKLTYLNCDTN  116 (457)
T ss_dssp             CEEECCSSCCCCCT-TGGGCTTCSEEECCSSCCSCCC----CTTCTTCSEEECCSSCCSCCC---CTTCTTCCEEECCSS
T ss_pred             CEEEccCCCcccCh-hhcccCCCCEEEccCCcCCeEc----cccCCCCCEEECcCCCCceee---cCCCCcCCEEECCCC
Confidence            78999999999998 45  467899999999999983    789999999999999999984   889999999999998


Q ss_pred             CCCcc-----ccccEEEccCCccccccccccceeeeeeccccCCccccceeecCCCC-ceeeccCCCCCCCCCCCeEEec
Q psy15407        175 PPKCT-----CTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNN-QIGFLSNFTFSPLSKLSQLILS  248 (604)
Q Consensus       175 ~~~~~-----~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N-~i~~l~~~~f~~l~~L~~L~Ls  248 (604)
                      .+..+     ..++.+.+..+         .+... .    .+. ..+|++|+|++| .+..+   .|..+++|++|+|+
T Consensus       117 ~l~~l~~~~l~~L~~L~l~~N---------~l~~l-~----l~~-l~~L~~L~l~~n~~~~~~---~~~~l~~L~~L~ls  178 (457)
T 3bz5_A          117 KLTKLDVSQNPLLTYLNCARN---------TLTEI-D----VSH-NTQLTELDCHLNKKITKL---DVTPQTQLTTLDCS  178 (457)
T ss_dssp             CCSCCCCTTCTTCCEEECTTS---------CCSCC-C----CTT-CTTCCEEECTTCSCCCCC---CCTTCTTCCEEECC
T ss_pred             cCCeecCCCCCcCCEEECCCC---------cccee-c----ccc-CCcCCEEECCCCCccccc---ccccCCcCCEEECC
Confidence            65543     23333433333         22221 1    112 238999999999 45555   48889999999999


Q ss_pred             CCcceeeeccccCCCCcccEEEccCCccccCCcccccCcccceeeeccCCCccc
Q psy15407        249 YNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIGGNPLYC  302 (604)
Q Consensus       249 ~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~Npl~C  302 (604)
                      +|+|+.++   +..+++|+.|+|++|+|+.++   |..+++|+.|+|++|.+.-
T Consensus       179 ~n~l~~l~---l~~l~~L~~L~l~~N~l~~~~---l~~l~~L~~L~Ls~N~l~~  226 (457)
T 3bz5_A          179 FNKITELD---VSQNKLLNRLNCDTNNITKLD---LNQNIQLTFLDCSSNKLTE  226 (457)
T ss_dssp             SSCCCCCC---CTTCTTCCEEECCSSCCSCCC---CTTCTTCSEEECCSSCCSC
T ss_pred             CCccceec---cccCCCCCEEECcCCcCCeec---cccCCCCCEEECcCCcccc
Confidence            99999985   888999999999999999984   7889999999999998874

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.69  E-value=4.9e-17  Score=163.83  Aligned_cols=183  Identities=19%  Similarity=0.155  Sum_probs=138.2

Q ss_pred             cCCCCCCcCCC-CCCccCcEEecCCCcceeecCCCccCCCCCCcEEeCCCCcceecCCCcCCCcccCCcCCCCCCCCCcc
Q psy15407        101 CSQRGLKEIPK-DIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDNYCPPKCT  179 (604)
Q Consensus       101 cs~~~L~~iP~-~l~~~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~l~~~~~~~~  179 (604)
                      +..+.++.+.. .-...+++|+|++|.|+.++.   |..+++|++|+|++|+|+.+++  |..+++|+.|++++|.+..+
T Consensus        26 l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~l~~---~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~  100 (308)
T 1h6u_A           26 AGKSNVTDTVTQADLDGITTLSAFGTGVTTIEG---VQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV  100 (308)
T ss_dssp             TTCSSTTSEECHHHHHTCCEEECTTSCCCCCTT---GGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC
T ss_pred             hCCCCcCceecHHHcCCcCEEEeeCCCccCchh---hhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc
Confidence            34445554321 224578999999999999863   8999999999999999999987  99999999999999976544


Q ss_pred             ccccEEEccCCccccccccccceeeeeeccccCCccccceeecCCCCceeeccCCCCCCCCCCCeEEecCCcceeeeccc
Q psy15407        180 CTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDA  259 (604)
Q Consensus       180 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~i~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~~~  259 (604)
                      ..+   .....+..+.+..+.+.....    ...+ .+|++|+|++|+|+.+++  |..+++|+.|+|++|+|+.+++  
T Consensus       101 ~~~---~~l~~L~~L~l~~n~l~~~~~----l~~l-~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--  168 (308)
T 1h6u_A          101 SAI---AGLQSIKTLDLTSTQITDVTP----LAGL-SNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--  168 (308)
T ss_dssp             GGG---TTCTTCCEEECTTSCCCCCGG----GTTC-TTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--
T ss_pred             hhh---cCCCCCCEEECCCCCCCCchh----hcCC-CCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--
Confidence            311   111222333333333222211    1222 389999999999998876  8889999999999999998865  


Q ss_pred             cCCCCcccEEEccCCccccCCcccccCcccceeeeccCCCccc
Q psy15407        260 LAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIGGNPLYC  302 (604)
Q Consensus       260 f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~Npl~C  302 (604)
                      |..+++|+.|+|++|+|+.+++  |..+++|++|+|++|++.-
T Consensus       169 l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~  209 (308)
T 1h6u_A          169 LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISD  209 (308)
T ss_dssp             GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCB
T ss_pred             hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCc
Confidence            8889999999999999998886  7889999999999998863

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.68  E-value=6.2e-17  Score=183.47  Aligned_cols=196  Identities=17%  Similarity=0.141  Sum_probs=91.1

Q ss_pred             CeEEcCCCCCCcCCCCCC--cc-CcEEecCCCcceeecCCCccCCCCC--CcEEeCCCCcceecCCCcC---C--CcccC
Q psy15407         97 TRVDCSQRGLKEIPKDIP--LY-TTELILNDNEIGKIKSDGLFGRLPN--LIKLDLRRNQVTGIEDNAF---E--GENDQ  166 (604)
Q Consensus        97 ~~l~cs~~~L~~iP~~l~--~~-~~~L~L~~N~i~~i~~~~~f~~l~~--L~~L~Ls~N~i~~i~~~~f---~--~l~~L  166 (604)
                      +.|++++|.|+.||..+.  .. ++.|+|++|.|+.||..  |..++.  |+.|+|++|+|+...+...   .  .+.+|
T Consensus       598 ~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~--~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L  675 (876)
T 4ecn_A          598 TDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNI--FNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINA  675 (876)
T ss_dssp             SEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCCSCCSC--CCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCE
T ss_pred             eEEECcCCccccchHHHhhccccCCEEECcCCCCCcCchh--hhccccCCCCEEECcCCcCCCccccchhhhccccCCCc
Confidence            567777777777776552  23 67777777777766542  554433  6666666666655433221   1  22356


Q ss_pred             CcCCCCCCCCCcc--------ccccEEEccCCccccccccccceeeeeeccccCCccccceeecCCCCceeeccCCCC-C
Q psy15407        167 GCLGDNYCPPKCT--------CTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSNFTF-S  237 (604)
Q Consensus       167 ~~L~l~~~~~~~~--------~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~i~~l~~~~f-~  237 (604)
                      +.|+|++|.+..+        ..++.+.+..+... .++...+....   ...... .+|+.|+|++|+|+.++...+ .
T Consensus       676 ~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~---~~l~nl-~~L~~L~Ls~N~L~~lp~~l~~~  750 (876)
T 4ecn_A          676 STVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENSLKPKD---GNYKNT-YLLTTIDLRFNKLTSLSDDFRAT  750 (876)
T ss_dssp             EEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTT---SCCTTG-GGCCEEECCSSCCCCCCGGGSTT
T ss_pred             CEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccChHHhcccc---cccccc-CCccEEECCCCCCccchHHhhhc
Confidence            6666666654422        12333333332211 11110000000   000000 145555555555554443222 2


Q ss_pred             CCCCCCeEEecCCcceeeeccccCCCCcccEEEccC------CccccCCcccccCcccceeeeccCCCc
Q psy15407        238 PLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHG------NDISMIPEGAFADLHAITHLAIGGNPL  300 (604)
Q Consensus       238 ~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~------N~l~~i~~~~f~~l~~L~~L~L~~Npl  300 (604)
                      .+++|+.|+|++|+|+.+ |..+..+++|+.|+|++      |+|....+..|..+++|+.|+|++|++
T Consensus       751 ~l~~L~~L~Ls~N~L~~l-p~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L  818 (876)
T 4ecn_A          751 TLPYLSNMDVSYNCFSSF-PTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI  818 (876)
T ss_dssp             TCTTCCEEECCSSCCSSC-CCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC
T ss_pred             cCCCcCEEEeCCCCCCcc-chhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC
Confidence            455555555555555554 33344455555555543      334433333444555555555555554

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.68  E-value=4.8e-17  Score=184.64  Aligned_cols=85  Identities=22%  Similarity=0.183  Sum_probs=47.1

Q ss_pred             cceeecCCCCceeeccCCCCCCCCCCCeEEecCCcceeeeccccCCCCcccEEEccCCccccCCcccccCcccceeeecc
Q psy15407        217 STMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIG  296 (604)
Q Consensus       217 ~L~~L~Ls~N~i~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~  296 (604)
                      +|++|+|++|+|+.+.+..|..+++|++|+|++|+|+...+..|..+++|++|+|++|+|+.+.+..|..+++|+.|+|+
T Consensus       419 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~  498 (768)
T 3rgz_A          419 ELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLS  498 (768)
T ss_dssp             TCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECC
T ss_pred             CCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEcc
Confidence            45555555555555444455555555555555555555445555555555555555555554444445555556666666


Q ss_pred             CCCcc
Q psy15407        297 GNPLY  301 (604)
Q Consensus       297 ~Npl~  301 (604)
                      +|++.
T Consensus       499 ~N~l~  503 (768)
T 3rgz_A          499 NNRLT  503 (768)
T ss_dssp             SSCCC
T ss_pred             CCccC
Confidence            55553

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.67  E-value=1.8e-16  Score=162.48  Aligned_cols=178  Identities=20%  Similarity=0.241  Sum_probs=94.2

Q ss_pred             CeEEcCCCCCCcCCCCC--CccCcEEecCCCcceeecCCCccCCCCCCcEEeCCCCcceecCCCcCCCcccCCcCCCCCC
Q psy15407         97 TRVDCSQRGLKEIPKDI--PLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDNYC  174 (604)
Q Consensus        97 ~~l~cs~~~L~~iP~~l--~~~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~l~~~  174 (604)
                      +.|+++++.|+.+|. +  ...+++|+|++|.|+.++.   |..+++|++|+|++|+|+.+++  |..+++|+.|++++|
T Consensus        69 ~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~i~~~~~---~~~l~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n  142 (347)
T 4fmz_A           69 EYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITDISA---LQNLTNLRELYLNEDNISDISP--LANLTKMYSLNLGAN  142 (347)
T ss_dssp             CEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG---GTTCTTCSEEECTTSCCCCCGG--GTTCTTCCEEECTTC
T ss_pred             cEEEccCCccccchh-hhcCCcCCEEEccCCcccCchH---HcCCCcCCEEECcCCcccCchh--hccCCceeEEECCCC
Confidence            667777777777664 3  3456777777777777642   6777777777777777777655  667777777777766


Q ss_pred             CC-------CccccccEEEccCCccccccccccceeeeeeccccCCccccceeecCCCCceeeccCCCCCCCCCCCeEEe
Q psy15407        175 PP-------KCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLIL  247 (604)
Q Consensus       175 ~~-------~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L  247 (604)
                      ..       .....++.+.+..+.....         ..    ... ..+|+.|+|++|.|+.+++  +..+++|+.|++
T Consensus       143 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~---------~~----~~~-l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l  206 (347)
T 4fmz_A          143 HNLSDLSPLSNMTGLNYLTVTESKVKDV---------TP----IAN-LTDLYSLSLNYNQIEDISP--LASLTSLHYFTA  206 (347)
T ss_dssp             TTCCCCGGGTTCTTCCEEECCSSCCCCC---------GG----GGG-CTTCSEEECTTSCCCCCGG--GGGCTTCCEEEC
T ss_pred             CCcccccchhhCCCCcEEEecCCCcCCc---------hh----hcc-CCCCCEEEccCCccccccc--ccCCCccceeec
Confidence            32       1222333343332221110         00    001 1245555555555554443  444444444444


Q ss_pred             cCCcceeeeccccCCCCcccEEEccCCccccCCcccccCcccceeeeccCCCc
Q psy15407        248 SYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIGGNPL  300 (604)
Q Consensus       248 s~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~Npl  300 (604)
                      ++|.+..+.+  +..+++|++|+|++|+|+.+++  +..+++|+.|+|++|.+
T Consensus       207 ~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l  255 (347)
T 4fmz_A          207 YVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQI  255 (347)
T ss_dssp             CSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred             ccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCcc
Confidence            4444444432  4444444455555554444443  44444444444444443

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.67  E-value=2.2e-16  Score=156.46  Aligned_cols=179  Identities=21%  Similarity=0.159  Sum_probs=115.8

Q ss_pred             CCeEEcCCCCCCcCCCC-C--CccCcEEecCCCcceeecCCCccCCCCCCcEEeCCCCcceecCCCcCCCcccCCcCCCC
Q psy15407         96 GTRVDCSQRGLKEIPKD-I--PLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDN  172 (604)
Q Consensus        96 ~~~l~cs~~~L~~iP~~-l--~~~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~l~  172 (604)
                      -+.|++++++|+.+|.. +  ...+++|+|++|.|+.+++. .|.++++|++|+|++|+|+.+.+.+|.++++|+.|+++
T Consensus        30 l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~  108 (276)
T 2z62_A           30 TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDG-AYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV  108 (276)
T ss_dssp             CCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTT-TTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred             ccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHH-HccCCcCCCEEECCCCccCccChhhhcCCccccEEECC
Confidence            35666777776666542 2  23456677777776666553 36666677777777777766666666666666666666


Q ss_pred             CCCC--------CccccccEEEccCCcccc----------------ccccccceeeeeeccccCCccccce----eecCC
Q psy15407        173 YCPP--------KCTCTVRVLFYDGRAGEC----------------YIAVELFSSRIRVSYYVGNYPVSTM----YRDLS  224 (604)
Q Consensus       173 ~~~~--------~~~~~l~~l~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~L~----~L~Ls  224 (604)
                      +|.+        .....++.+.+..+....                .+..+.+..... ..+ ... .+|+    .|+|+
T Consensus       109 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~-~~l-~~L~~l~l~L~ls  185 (276)
T 2z62_A          109 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC-TDL-RVL-HQMPLLNLSLDLS  185 (276)
T ss_dssp             TSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECG-GGG-HHH-HTCTTCCEEEECC
T ss_pred             CCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCH-HHh-hhh-hhccccceeeecC
Confidence            6532        233445555555443221                111111111100 000 000 1333    79999


Q ss_pred             CCceeeccCCCCCCCCCCCeEEecCCcceeeeccccCCCCcccEEEccCCccccC
Q psy15407        225 NNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMI  279 (604)
Q Consensus       225 ~N~i~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i  279 (604)
                      +|+|+.+++..|... +|++|+|++|+|+.+++..|..+++|+.|+|++|+|+.-
T Consensus       186 ~n~l~~~~~~~~~~~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  239 (276)
T 2z62_A          186 LNPMNFIQPGAFKEI-RLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS  239 (276)
T ss_dssp             SSCCCEECTTSSCSC-CEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCC
T ss_pred             CCcccccCccccCCC-cccEEECCCCceeecCHhHhcccccccEEEccCCccccc
Confidence            999999999887754 899999999999999999999999999999999999854

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.66  E-value=1.7e-17  Score=152.78  Aligned_cols=131  Identities=22%  Similarity=0.234  Sum_probs=106.6

Q ss_pred             CccCcEEecCCCcceeecCCCccCCCC-CCcEEeCCCCcceecCCCcCCCcccCCcCCCCCCCCCccccccEEEccCCcc
Q psy15407        114 PLYTTELILNDNEIGKIKSDGLFGRLP-NLIKLDLRRNQVTGIEDNAFEGENDQGCLGDNYCPPKCTCTVRVLFYDGRAG  192 (604)
Q Consensus       114 ~~~~~~L~L~~N~i~~i~~~~~f~~l~-~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~l~~~~~~~~~~l~~l~~~~~~~  192 (604)
                      +..+++|+|++|.|+.++.   +..+. +|++|+|++|.|+.+  ..|..++                            
T Consensus        18 ~~~L~~L~l~~n~l~~i~~---~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~----------------------------   64 (176)
T 1a9n_A           18 AVRDRELDLRGYKIPVIEN---LGATLDQFDAIDFSDNEIRKL--DGFPLLR----------------------------   64 (176)
T ss_dssp             TTSCEEEECTTSCCCSCCC---GGGGTTCCSEEECCSSCCCEE--CCCCCCS----------------------------
T ss_pred             cCCceEEEeeCCCCchhHH---hhhcCCCCCEEECCCCCCCcc--cccccCC----------------------------
Confidence            4567888888888887742   44444 888888888888887  3455443                            


Q ss_pred             ccccccccceeeeeeccccCCccccceeecCCCCceeeccCCCCCCCCCCCeEEecCCcceeeec-cccCCCCcccEEEc
Q psy15407        193 ECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDR-DALAGLKSLRIISL  271 (604)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~i~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~-~~f~~l~~L~~L~L  271 (604)
                                              +|++|+|++|+|+.+++..|..+++|++|+|++|+|+.++. ..|..+++|+.|+|
T Consensus        65 ------------------------~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l  120 (176)
T 1a9n_A           65 ------------------------RLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCI  120 (176)
T ss_dssp             ------------------------SCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEEC
T ss_pred             ------------------------CCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEe
Confidence                                    78888999999999988778889999999999999988865 47888999999999


Q ss_pred             cCCccccCCcc---cccCcccceeeeccCCCcc
Q psy15407        272 HGNDISMIPEG---AFADLHAITHLAIGGNPLY  301 (604)
Q Consensus       272 s~N~l~~i~~~---~f~~l~~L~~L~L~~Npl~  301 (604)
                      ++|.|+.++..   ++..+++|+.|++++|+..
T Consensus       121 ~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~  153 (176)
T 1a9n_A          121 LRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLK  153 (176)
T ss_dssp             CSSGGGGSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred             cCCCCCCcHhHHHHHHHHCCccceeCCCcCCHH
Confidence            99999988875   5788999999999998765

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.65  E-value=2.1e-16  Score=157.85  Aligned_cols=161  Identities=24%  Similarity=0.284  Sum_probs=133.8

Q ss_pred             EcCCCCCCcCCC-CCCccCcEEecCCCcceeecCCCccCCCCCCcEEeCCCCcceecCCCcCCCcccCCcCCCCCCCCCc
Q psy15407        100 DCSQRGLKEIPK-DIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDNYCPPKC  178 (604)
Q Consensus       100 ~cs~~~L~~iP~-~l~~~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~l~~~~~~~  178 (604)
                      .+....++.+.. .-...++.|+|++|.|+.++.   |..+++|++|+|++|+|+.+++  |..+++|+.|++++|.+..
T Consensus        30 ~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~---~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~  104 (291)
T 1h6t_A           30 NLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQG---IQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD  104 (291)
T ss_dssp             HTTCSCTTSEECHHHHHTCCEEECTTSCCCCCTT---GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC
T ss_pred             HhcCCCcccccchhhcCcccEEEccCCCcccChh---HhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC
Confidence            344555554322 124567999999999999953   8999999999999999999987  8999999999999876543


Q ss_pred             cccccEEEccCCccccccccccceeeeeeccccCCccccceeecCCCCceeeccCCCCCCCCCCCeEEecCCcceeeecc
Q psy15407        179 TCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRD  258 (604)
Q Consensus       179 ~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~i~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~~  258 (604)
                      +..                             ... ..+|++|+|++|+|+.++  .|..+++|+.|+|++|+|+.+  .
T Consensus       105 ~~~-----------------------------l~~-l~~L~~L~L~~n~i~~~~--~l~~l~~L~~L~l~~n~l~~~--~  150 (291)
T 1h6t_A          105 LSS-----------------------------LKD-LKKLKSLSLEHNGISDIN--GLVHLPQLESLYLGNNKITDI--T  150 (291)
T ss_dssp             GGG-----------------------------GTT-CTTCCEEECTTSCCCCCG--GGGGCTTCCEEECCSSCCCCC--G
T ss_pred             Chh-----------------------------hcc-CCCCCEEECCCCcCCCCh--hhcCCCCCCEEEccCCcCCcc--h
Confidence            211                             111 138999999999999984  588999999999999999998  5


Q ss_pred             ccCCCCcccEEEccCCccccCCcccccCcccceeeeccCCCcc
Q psy15407        259 ALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIGGNPLY  301 (604)
Q Consensus       259 ~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~Npl~  301 (604)
                      .|..+++|++|+|++|+|+.+++  +..+++|+.|+|++|.+.
T Consensus       151 ~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~  191 (291)
T 1h6t_A          151 VLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS  191 (291)
T ss_dssp             GGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred             hhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCC
Confidence            78999999999999999999987  889999999999999886

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.64  E-value=3.8e-16  Score=166.85  Aligned_cols=179  Identities=23%  Similarity=0.283  Sum_probs=91.7

Q ss_pred             CeEEcCCCCCCcCCCCC-CccCcEEecCCCcceeecCCCccCCCCCCcEEeCCCCcceecCCCcCCCcccCCcCCCCCCC
Q psy15407         97 TRVDCSQRGLKEIPKDI-PLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDNYCP  175 (604)
Q Consensus        97 ~~l~cs~~~L~~iP~~l-~~~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~l~~~~  175 (604)
                      +.|+++++.++.++.-- ...+++|+|++|.|+.+++   +..+++|++|+|++|+|+.++  .|..+++|+.|++++|.
T Consensus       180 ~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~l~~n~  254 (466)
T 1o6v_A          180 ERLDISSNKVSDISVLAKLTNLESLIATNNQISDITP---LGILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQ  254 (466)
T ss_dssp             CEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG---GGGCTTCCEEECCSSCCCCCG--GGGGCTTCSEEECCSSC
T ss_pred             CEEECcCCcCCCChhhccCCCCCEEEecCCccccccc---ccccCCCCEEECCCCCcccch--hhhcCCCCCEEECCCCc
Confidence            56777777777665311 3456777777777766654   556677777777777766653  46666666777666665


Q ss_pred             CCcc------ccccEEEccCCccccccccccceeeeeeccccCCccccceeecCCCCceeeccCCCCCCCCCCCeEEecC
Q psy15407        176 PKCT------CTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSY  249 (604)
Q Consensus       176 ~~~~------~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~i~~l~~~~f~~l~~L~~L~Ls~  249 (604)
                      +...      ..++.+.+..+.         +.....    .... .+|+.|+|++|+|+.+++  +..+++|+.|+|++
T Consensus       255 l~~~~~~~~l~~L~~L~l~~n~---------l~~~~~----~~~l-~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~  318 (466)
T 1o6v_A          255 ISNLAPLSGLTKLTELKLGANQ---------ISNISP----LAGL-TALTNLELNENQLEDISP--ISNLKNLTYLTLYF  318 (466)
T ss_dssp             CCCCGGGTTCTTCSEEECCSSC---------CCCCGG----GTTC-TTCSEEECCSSCCSCCGG--GGGCTTCSEEECCS
T ss_pred             cccchhhhcCCCCCEEECCCCc---------cCcccc----ccCC-CccCeEEcCCCcccCchh--hcCCCCCCEEECcC
Confidence            4332      223333332221         111100    0111 244555555555544443  44445555555555


Q ss_pred             CcceeeeccccCCCCcccEEEccCCccccCCcccccCcccceeeeccCCCc
Q psy15407        250 NKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIGGNPL  300 (604)
Q Consensus       250 N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~Npl  300 (604)
                      |+|+.+.+  +..+++|+.|+|++|+|+.++  .|..+++|+.|+|++|++
T Consensus       319 n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l  365 (466)
T 1o6v_A          319 NNISDISP--VSSLTKLQRLFFYNNKVSDVS--SLANLTNINWLSAGHNQI  365 (466)
T ss_dssp             SCCSCCGG--GGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCC
T ss_pred             CcCCCchh--hccCccCCEeECCCCccCCch--hhccCCCCCEEeCCCCcc
Confidence            55544433  344445555555555554442  244444555555555444

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.64  E-value=7.4e-17  Score=144.01  Aligned_cols=129  Identities=21%  Similarity=0.219  Sum_probs=110.7

Q ss_pred             CCccCcEEecCCCcce--eecCCCccCCCCCCcEEeCCCCcceecCCCcCCCcccCCcCCCCCCCCCccccccEEEccCC
Q psy15407        113 IPLYTTELILNDNEIG--KIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDNYCPPKCTCTVRVLFYDGR  190 (604)
Q Consensus       113 l~~~~~~L~L~~N~i~--~i~~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~l~~~~~~~~~~l~~l~~~~~  190 (604)
                      .+..++.|+|++|.|+  .++..  |..+++|++|+|++|+|+.+  ..|..++                          
T Consensus        15 ~~~~l~~L~l~~n~l~~~~~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~--------------------------   64 (149)
T 2je0_A           15 TPSDVKELVLDNSRSNEGKLEGL--TDEFEELEFLSTINVGLTSI--ANLPKLN--------------------------   64 (149)
T ss_dssp             CGGGCSEEECTTCBCBTTBCCSC--CTTCTTCCEEECTTSCCCCC--TTCCCCT--------------------------
T ss_pred             CCccCeEEEccCCcCChhHHHHH--HhhcCCCcEEECcCCCCCCc--hhhhcCC--------------------------
Confidence            4577899999999998  77653  89999999999999999988  4555543                          


Q ss_pred             ccccccccccceeeeeeccccCCccccceeecCCCCceeeccCCCCCCCCCCCeEEecCCcceeee-ccccCCCCcccEE
Q psy15407        191 AGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCID-RDALAGLKSLRII  269 (604)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~i~~l~~~~f~~l~~L~~L~Ls~N~l~~i~-~~~f~~l~~L~~L  269 (604)
                                                +|++|+|++|+|+...+..+..+++|++|+|++|+|+.++ +..|..+++|++|
T Consensus        65 --------------------------~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L  118 (149)
T 2je0_A           65 --------------------------KLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSL  118 (149)
T ss_dssp             --------------------------TCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEE
T ss_pred             --------------------------CCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEE
Confidence                                      7888899999999855557778999999999999999974 3788999999999


Q ss_pred             EccCCccccCCc---ccccCcccceeeeccC
Q psy15407        270 SLHGNDISMIPE---GAFADLHAITHLAIGG  297 (604)
Q Consensus       270 ~Ls~N~l~~i~~---~~f~~l~~L~~L~L~~  297 (604)
                      +|++|+|+.+++   ..|..+++|+.|++++
T Consensus       119 ~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A          119 DLFNCEVTNLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             ECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred             eCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence            999999999987   6788999999999864

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.64  E-value=3.9e-16  Score=153.38  Aligned_cols=149  Identities=19%  Similarity=0.181  Sum_probs=125.3

Q ss_pred             CeEEcCCCCCCcCCCCC--CccCcEEecCCCcceeecCCCccCCCCCCcEEeCCCCcceecCCCcCCCcccCCcCCCCCC
Q psy15407         97 TRVDCSQRGLKEIPKDI--PLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDNYC  174 (604)
Q Consensus        97 ~~l~cs~~~L~~iP~~l--~~~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~l~~~  174 (604)
                      +.|++++++|+.+| .+  ...+++|+|++|+|+.+++   |..+++|++|+|++|+|+.+++..+   .+|+.|++++|
T Consensus        44 ~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~---l~~l~~L~~L~L~~N~l~~l~~~~~---~~L~~L~L~~N  116 (263)
T 1xeu_A           44 QNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSP---LKDLTKLEELSVNRNRLKNLNGIPS---ACLSRLFLDNN  116 (263)
T ss_dssp             SEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG---GTTCSSCCEEECCSSCCSCCTTCCC---SSCCEEECCSS
T ss_pred             cEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChh---hccCCCCCEEECCCCccCCcCcccc---CcccEEEccCC
Confidence            78999999999998 34  5678999999999999975   8999999999999999999876544   78888888887


Q ss_pred             CCCccccccEEEccCCccccccccccceeeeeeccccCCccccceeecCCCCceeeccCCCCCCCCCCCeEEecCCccee
Q psy15407        175 PPKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQC  254 (604)
Q Consensus       175 ~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~i~~l~~~~f~~l~~L~~L~Ls~N~l~~  254 (604)
                      .+..+..                             ... ..+|++|+|++|+|+.++  .|..+++|++|+|++|+|+.
T Consensus       117 ~l~~~~~-----------------------------l~~-l~~L~~L~Ls~N~i~~~~--~l~~l~~L~~L~L~~N~i~~  164 (263)
T 1xeu_A          117 ELRDTDS-----------------------------LIH-LKNLEILSIRNNKLKSIV--MLGFLSKLEVLDLHGNEITN  164 (263)
T ss_dssp             CCSBSGG-----------------------------GTT-CTTCCEEECTTSCCCBCG--GGGGCTTCCEEECTTSCCCB
T ss_pred             ccCCChh-----------------------------hcC-cccccEEECCCCcCCCCh--HHccCCCCCEEECCCCcCcc
Confidence            6442210                             111 138999999999999996  68899999999999999999


Q ss_pred             eeccccCCCCcccEEEccCCccccCCcccccC
Q psy15407        255 IDRDALAGLKSLRIISLHGNDISMIPEGAFAD  286 (604)
Q Consensus       255 i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~  286 (604)
                      +  ..|..+++|+.|+|++|+|+..+...+..
T Consensus       165 ~--~~l~~l~~L~~L~l~~N~~~~~~~~~~~~  194 (263)
T 1xeu_A          165 T--GGLTRLKKVNWIDLTGQKCVNEPVKYQPE  194 (263)
T ss_dssp             C--TTSTTCCCCCEEEEEEEEEECCCEECCSE
T ss_pred             h--HHhccCCCCCEEeCCCCcccCCccccccc
Confidence            8  67899999999999999999887654443

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.63  E-value=2.5e-15  Score=159.50  Aligned_cols=180  Identities=18%  Similarity=0.172  Sum_probs=101.5

Q ss_pred             CCeEEcCCCCCCcCCCCC--CccCcEEecCCCcceeecCCCccCCCCCCcEEeCCCCcceecCCCcCCCcccCCcCCCCC
Q psy15407         96 GTRVDCSQRGLKEIPKDI--PLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDNY  173 (604)
Q Consensus        96 ~~~l~cs~~~L~~iP~~l--~~~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~l~~  173 (604)
                      -+.|++++|.|+.+|. +  ...+++|+|++|+|+.++..     .++|++|+|++|+|+.++  .|..+++|+.|++++
T Consensus       175 L~~L~L~~n~l~~l~~-~~~l~~L~~L~l~~N~l~~l~~~-----~~~L~~L~l~~n~l~~lp--~~~~l~~L~~L~l~~  246 (454)
T 1jl5_A          175 LEFIAAGNNQLEELPE-LQNLPFLTAIYADNNSLKKLPDL-----PLSLESIVAGNNILEELP--ELQNLPFLTTIYADN  246 (454)
T ss_dssp             CCEEECCSSCCSSCCC-CTTCTTCCEEECCSSCCSSCCCC-----CTTCCEEECCSSCCSSCC--CCTTCTTCCEEECCS
T ss_pred             ccEEECcCCcCCcCcc-ccCCCCCCEEECCCCcCCcCCCC-----cCcccEEECcCCcCCccc--ccCCCCCCCEEECCC
Confidence            4567777777777663 3  33456666666666655431     145666666666666554  255666666666665


Q ss_pred             CCCCcc----ccccEEEccCCccc-----------cccccccceeeeeeccccCCccccceeecCCCCceeeccCCCCCC
Q psy15407        174 CPPKCT----CTVRVLFYDGRAGE-----------CYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSNFTFSP  238 (604)
Q Consensus       174 ~~~~~~----~~l~~l~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~i~~l~~~~f~~  238 (604)
                      |.+..+    ..++.+.+..+...           +.+..+.+..      +. ..+.+|++|+|++|+|+.++..    
T Consensus       247 N~l~~l~~~~~~L~~L~l~~N~l~~l~~~~~~L~~L~ls~N~l~~------l~-~~~~~L~~L~l~~N~l~~i~~~----  315 (454)
T 1jl5_A          247 NLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSG------LS-ELPPNLYYLNASSNEIRSLCDL----  315 (454)
T ss_dssp             SCCSSCCSCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSE------ES-CCCTTCCEEECCSSCCSEECCC----
T ss_pred             CcCCcccccccccCEEECCCCcccccCcccCcCCEEECcCCccCc------cc-CcCCcCCEEECcCCcCCcccCC----
Confidence            544322    23344444332211           1111111111      10 1234667777777777665421    


Q ss_pred             CCCCCeEEecCCcceeeeccccCCCCcccEEEccCCccccCCcccccCcccceeeeccCCCccc
Q psy15407        239 LSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIGGNPLYC  302 (604)
Q Consensus       239 l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~Npl~C  302 (604)
                      .++|++|+|++|+|+.++..    +++|++|+|++|+|+.+|.    .+++|+.|+|++|++..
T Consensus       316 ~~~L~~L~Ls~N~l~~lp~~----~~~L~~L~L~~N~l~~lp~----~l~~L~~L~L~~N~l~~  371 (454)
T 1jl5_A          316 PPSLEELNVSNNKLIELPAL----PPRLERLIASFNHLAEVPE----LPQNLKQLHVEYNPLRE  371 (454)
T ss_dssp             CTTCCEEECCSSCCSCCCCC----CTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSS
T ss_pred             cCcCCEEECCCCcccccccc----CCcCCEEECCCCccccccc----hhhhccEEECCCCCCCc
Confidence            24677777777777776432    4677777777777777766    35677777777777765

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.62  E-value=2.5e-15  Score=159.53  Aligned_cols=73  Identities=18%  Similarity=0.291  Sum_probs=38.9

Q ss_pred             CeEEcCCCCCCcCCCCCCccCcEEecCCCcceeecCCCccCCCCCCcEEeCCCCcceecCCCcCCCcccCCcCCCCCCCC
Q psy15407         97 TRVDCSQRGLKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDNYCPP  176 (604)
Q Consensus        97 ~~l~cs~~~L~~iP~~l~~~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~l~~~~~  176 (604)
                      +.|++++|.|+.||. .+..+++|+|++|+|+.++.   +  .++|++|+|++|+|+.|+  .|..+.+|+.|++++|.+
T Consensus        94 ~~L~l~~n~l~~lp~-~~~~L~~L~l~~n~l~~l~~---~--~~~L~~L~L~~n~l~~lp--~~~~l~~L~~L~l~~N~l  165 (454)
T 1jl5_A           94 ESLVASCNSLTELPE-LPQSLKSLLVDNNNLKALSD---L--PPLLEYLGVSNNQLEKLP--ELQNSSFLKIIDVDNNSL  165 (454)
T ss_dssp             SEEECCSSCCSSCCC-CCTTCCEEECCSSCCSCCCS---C--CTTCCEEECCSSCCSSCC--CCTTCTTCCEEECCSSCC
T ss_pred             CEEEccCCcCCcccc-ccCCCcEEECCCCccCcccC---C--CCCCCEEECcCCCCCCCc--ccCCCCCCCEEECCCCcC
Confidence            445555555555553 23445555555555554432   1  145666666666666654  366666666666665544


Q ss_pred             C
Q psy15407        177 K  177 (604)
Q Consensus       177 ~  177 (604)
                      .
T Consensus       166 ~  166 (454)
T 1jl5_A          166 K  166 (454)
T ss_dssp             S
T ss_pred             c
Confidence            3

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.62  E-value=2.1e-16  Score=173.14  Aligned_cols=163  Identities=23%  Similarity=0.266  Sum_probs=136.2

Q ss_pred             EEcCCCCCCcCCC-CCCccCcEEecCCCcceeecCCCccCCCCCCcEEeCCCCcceecCCCcCCCcccCCcCCCCCCCCC
Q psy15407         99 VDCSQRGLKEIPK-DIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDNYCPPK  177 (604)
Q Consensus        99 l~cs~~~L~~iP~-~l~~~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~l~~~~~~  177 (604)
                      +.++.+.++.++. .-...++.|+|++|.|..++.   |..|++|+.|+|++|+|+.+++  |..+++|+.|+|++|.+.
T Consensus        26 l~l~~~~i~~~~~~~~L~~L~~L~l~~n~i~~l~~---l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~  100 (605)
T 1m9s_A           26 DNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQG---IQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIK  100 (605)
T ss_dssp             HHTTCSCTTSEECHHHHTTCCCCBCTTCCCCCCTT---GGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCC
T ss_pred             HhccCCCcccccchhcCCCCCEEECcCCCCCCChH---HccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCC
Confidence            4556666665543 124567999999999999963   8999999999999999999987  889999999999987654


Q ss_pred             ccccccEEEccCCccccccccccceeeeeeccccCCccccceeecCCCCceeeccCCCCCCCCCCCeEEecCCcceeeec
Q psy15407        178 CTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDR  257 (604)
Q Consensus       178 ~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~i~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~  257 (604)
                      .+..                             ... ..+|+.|+|++|+|+.++  .|..+++|+.|+|++|+|+.+  
T Consensus       101 ~l~~-----------------------------l~~-l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~Ls~N~l~~l--  146 (605)
T 1m9s_A          101 DLSS-----------------------------LKD-LKKLKSLSLEHNGISDIN--GLVHLPQLESLYLGNNKITDI--  146 (605)
T ss_dssp             CCTT-----------------------------STT-CTTCCEEECTTSCCCCCG--GGGGCTTCSEEECCSSCCCCC--
T ss_pred             CChh-----------------------------hcc-CCCCCEEEecCCCCCCCc--cccCCCccCEEECCCCccCCc--
Confidence            2110                             111 238999999999999985  488999999999999999998  


Q ss_pred             cccCCCCcccEEEccCCccccCCcccccCcccceeeeccCCCccc
Q psy15407        258 DALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIGGNPLYC  302 (604)
Q Consensus       258 ~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~Npl~C  302 (604)
                      ..|..+++|+.|+|++|+|+.+++  |..+++|+.|+|++|++.-
T Consensus       147 ~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~  189 (605)
T 1m9s_A          147 TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD  189 (605)
T ss_dssp             GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB
T ss_pred             hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCC
Confidence            578999999999999999999987  8899999999999998863

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.61  E-value=1.4e-16  Score=160.76  Aligned_cols=192  Identities=14%  Similarity=0.046  Sum_probs=133.8

Q ss_pred             CeEEcCCCCCCc-----CCCCC-CccCcEEecCCCcceeecCCCcc-CCCCCCcEEeCCCCcceecCC----CcCCCccc
Q psy15407         97 TRVDCSQRGLKE-----IPKDI-PLYTTELILNDNEIGKIKSDGLF-GRLPNLIKLDLRRNQVTGIED----NAFEGEND  165 (604)
Q Consensus        97 ~~l~cs~~~L~~-----iP~~l-~~~~~~L~L~~N~i~~i~~~~~f-~~l~~L~~L~Ls~N~i~~i~~----~~f~~l~~  165 (604)
                      +.+.+++..++.     ++..+ ...+++|+|++|.|+.+.+..+| ..+++|++|+|++|+|+...+    ..|..+++
T Consensus        67 ~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~  146 (310)
T 4glp_A           67 RRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPG  146 (310)
T ss_dssp             CEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSC
T ss_pred             eEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccC
Confidence            566777766642     11111 23489999999999877665433 899999999999999987433    45567889


Q ss_pred             CCcCCCCCCCCCc--------cccccEEEccCCccccccccccceee--eeeccccCCccccceeecCCCCceeeccCC-
Q psy15407        166 QGCLGDNYCPPKC--------TCTVRVLFYDGRAGECYIAVELFSSR--IRVSYYVGNYPVSTMYRDLSNNQIGFLSNF-  234 (604)
Q Consensus       166 L~~L~l~~~~~~~--------~~~l~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~L~~L~Ls~N~i~~l~~~-  234 (604)
                      |+.|+|++|.+..        +..++.+.++.+.         +...  .......+.++ +|++|+|++|+|+.++.. 
T Consensus       147 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~---------l~~~~~~~~~~~~~~l~-~L~~L~Ls~N~l~~l~~~~  216 (310)
T 4glp_A          147 LKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNP---------GLGERGLMAALCPHKFP-AIQNLALRNTGMETPTGVC  216 (310)
T ss_dssp             CCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCT---------TCHHHHHHTTSCTTSSC-CCCSCBCCSSCCCCHHHHH
T ss_pred             CCEEEeeCCCcchhhHHHhccCCCCCEEECCCCC---------CccchhhhHHHhhhcCC-CCCEEECCCCCCCchHHHH
Confidence            9999999886532        2334444444432         1111  00011112233 788999999999876543 


Q ss_pred             --CCCCCCCCCeEEecCCcceeeeccccCCC---CcccEEEccCCccccCCcccccCcccceeeeccCCCcc
Q psy15407        235 --TFSPLSKLSQLILSYNKLQCIDRDALAGL---KSLRIISLHGNDISMIPEGAFADLHAITHLAIGGNPLY  301 (604)
Q Consensus       235 --~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l---~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~Npl~  301 (604)
                        .|..+++|++|+|++|+|+.+.|..+..+   ++|++|+|++|+|+.||...+   ++|+.|+|++|.+.
T Consensus       217 ~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~---~~L~~L~Ls~N~l~  285 (310)
T 4glp_A          217 AALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLP---AKLRVLDLSSNRLN  285 (310)
T ss_dssp             HHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCCC---SCCSCEECCSCCCC
T ss_pred             HHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhhc---CCCCEEECCCCcCC
Confidence              35678899999999999998866566555   699999999999998887654   68899999999886

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.61  E-value=1.6e-15  Score=155.88  Aligned_cols=167  Identities=18%  Similarity=0.173  Sum_probs=131.3

Q ss_pred             cEEecCCCcceeecCCCccCCCCCCcEEeCCCCcceecCCCcCCCcccCCcCCCCCCCCCcc--------ccccEEEccC
Q psy15407        118 TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDNYCPPKCT--------CTVRVLFYDG  189 (604)
Q Consensus       118 ~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~l~~~~~~~~--------~~l~~l~~~~  189 (604)
                      ...++++|.|+.||..  +.  ++|++|+|++|+|+.+++.+|.++++|+.|++++|.+..+        ..++.+.+..
T Consensus        34 ~~c~~~~~~l~~iP~~--~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~  109 (353)
T 2z80_A           34 GICKGSSGSLNSIPSG--LT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSY  109 (353)
T ss_dssp             SEEECCSTTCSSCCTT--CC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             eEeeCCCCCccccccc--cc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCC
Confidence            4589999999999863  33  5899999999999999999999999999999999864432        3344444443


Q ss_pred             CccccccccccceeeeeeccccCCccccceeecCCCCceeeccC-CCCCCCCCCCeEEecCC-cceeeeccccCCCCccc
Q psy15407        190 RAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSN-FTFSPLSKLSQLILSYN-KLQCIDRDALAGLKSLR  267 (604)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~i~~l~~-~~f~~l~~L~~L~Ls~N-~l~~i~~~~f~~l~~L~  267 (604)
                      +.         +.....  ...... .+|++|+|++|+|+.++. ..|..+++|++|+|++| .+..+++..|..+++|+
T Consensus       110 n~---------l~~~~~--~~~~~l-~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~  177 (353)
T 2z80_A          110 NY---------LSNLSS--SWFKPL-SSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLE  177 (353)
T ss_dssp             SC---------CSSCCH--HHHTTC-TTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEE
T ss_pred             Cc---------CCcCCH--hHhCCC-ccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCC
Confidence            32         211110  001122 388899999999998887 78889999999999998 58888888899999999


Q ss_pred             EEEccCCccccCCcccccCcccceeeeccCCCc
Q psy15407        268 IISLHGNDISMIPEGAFADLHAITHLAIGGNPL  300 (604)
Q Consensus       268 ~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~Npl  300 (604)
                      +|+|++|+|+.+.+..|..+++|++|+|++|.+
T Consensus       178 ~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l  210 (353)
T 2z80_A          178 ELEIDASDLQSYEPKSLKSIQNVSHLILHMKQH  210 (353)
T ss_dssp             EEEEEETTCCEECTTTTTTCSEEEEEEEECSCS
T ss_pred             EEECCCCCcCccCHHHHhccccCCeecCCCCcc
Confidence            999999999988887888899999999998876

>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_B* 3k72_B*

Probab=99.61  E-value=3.2e-16  Score=170.04  Aligned_cols=134  Identities=27%  Similarity=0.700  Sum_probs=101.9

Q ss_pred             CCCCCCCCCeeeeCCCCceEeeCCCCCcCCCCCcCCC---------cCCCC----CCCCCcEEEeCCCCeEEecC-----
Q psy15407        401 YGNPCRNSGTCKLLEEGRFNCECAPGYTGDRCEINID---------DCLSH----KCENNATCVDLIQAYECRCA-----  462 (604)
Q Consensus       401 ~~~~C~~~~~C~~~~~~~~~C~C~~g~~g~~C~~~~~---------~C~~~----~C~~~~~C~~~~~~~~C~C~-----  462 (604)
                      .+.+|.++|+|..     ..|.|.+||+|..|+.+++         .|...    +|.++|+|+.    ..|.|.     
T Consensus       433 ~s~~Cs~~G~C~~-----g~C~C~~Gy~G~~Cec~~~~~~~~~~~~~C~~~~~~~~Cs~~G~C~~----G~C~C~~~~~~  503 (687)
T 3k6s_B          433 DRSLCHGKGFLEC-----GICRCDTGYIGKNCECQTQGRSSQELEGSCRKDNNSIICSGLGDCVC----GQCLCHTSDVP  503 (687)
T ss_dssp             CSSTGGGSEEESS-----SSEEECSSEESTTSCEESSSCCCSGGGSTTSSSTTSCGGGSSEEEET----TEEEECCCCST
T ss_pred             CCCCCCCCCEEeC-----CEeEcCCCCcCCcccccCCcCCccccCCCCCCCCCCCcCCCCCEEeC----CEEEcCCCCCC
Confidence            4567888888852     3699999999999985443         47643    4888899983    279999     


Q ss_pred             -CCCCCCCcccCCCcCCCC-CCCCCC--CCceeecCCCeEEecCCCCcCCcCcc--cCCCCCCC---CCCCCCEEeeCCC
Q psy15407        463 -PGFQGEFCQTKTPFCAGE-YNPCRN--GARCLDHFSHYTCECTPGFSGVNCTV--NVDDCVNH---MCQNGGTCVDGIN  533 (604)
Q Consensus       463 -~g~~g~~C~~~~~~C~~~-~~~C~~--~~~C~~~~~~~~C~C~~g~~g~~c~~--~~~~C~~~---~C~~~~~C~~~~~  533 (604)
                       +||.|..|+.+...|... ...|.+  +|+|+.    .+|.|.+||+|..|+.  +.+.|...   +|.++|+|+.   
T Consensus       504 ~~G~~G~~Ce~~~~~C~~~~~~~C~~~~~G~C~~----g~C~C~~G~~G~~Cec~~~~~~C~~~~g~~Cs~~G~C~~---  576 (687)
T 3k6s_B          504 GKLIYGQYCECDTINCERYNGQVCGGPGRGLCFC----GKCRCHPGFEGSACQCERTTEGCLNPRRVECSGRGRCRC---  576 (687)
T ss_dssp             TCCEESTTSCEESSCSCEETTEETSHHHHEEEET----TEEEECTTCCSTTSCSCCSSCTTBCTTCSBTSSSCCBCS---
T ss_pred             CCCccccccccccccccCCCCcCcCCCCCCeEEC----CEEEcCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcCCC---
Confidence             999999998767777632 235887  788874    3799999999999873  35678654   7988899976   


Q ss_pred             CeEeeeCCCCccCCCCcC
Q psy15407        534 DYTCKCEGDFVGKFCEIA  551 (604)
Q Consensus       534 ~y~C~C~~G~~G~~C~~~  551 (604)
                       ++|.|++||+|..|+.+
T Consensus       577 -g~C~C~~Gy~G~~Ce~c  593 (687)
T 3k6s_B          577 -NVCECHSGYQLPLCQEC  593 (687)
T ss_dssp             -SCBCCSTTCCTTTTCCC
T ss_pred             -CEEECCCCCcCCCCCCC
Confidence             37999999999999863

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.61  E-value=2.2e-15  Score=153.28  Aligned_cols=200  Identities=16%  Similarity=0.156  Sum_probs=131.9

Q ss_pred             CeEEcCCCCCC--------------------cCCCCCC-----------ccCcEEecCCCcceeecCCCccCCCCCCcEE
Q psy15407         97 TRVDCSQRGLK--------------------EIPKDIP-----------LYTTELILNDNEIGKIKSDGLFGRLPNLIKL  145 (604)
Q Consensus        97 ~~l~cs~~~L~--------------------~iP~~l~-----------~~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L  145 (604)
                      +.||+++|+|.                    .||...+           ..++.|+|.. .|+.|+. .+|.++++|+.|
T Consensus        52 ~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~-~aF~~~~~L~~l  129 (329)
T 3sb4_A           52 KVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIED-AAFKGCDNLKIC  129 (329)
T ss_dssp             CEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECT-TTTTTCTTCCEE
T ss_pred             eEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc-cccchhH-HHhhcCcccceE
Confidence            68888888888                    4444432           3346677776 6777765 347777777777


Q ss_pred             eCCCCcceecCCCcCCCcccCCcCCCCCCC----CCccccccEEEccCCcccccc---------------ccccceee--
Q psy15407        146 DLRRNQVTGIEDNAFEGENDQGCLGDNYCP----PKCTCTVRVLFYDGRAGECYI---------------AVELFSSR--  204 (604)
Q Consensus       146 ~Ls~N~i~~i~~~~f~~l~~L~~L~l~~~~----~~~~~~l~~l~~~~~~~~~~~---------------~~~~~~~~--  204 (604)
                      +|++|.++.|.+.+|.+..++..|.+....    ...+..............+.+               ....+...  
T Consensus       130 ~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~  209 (329)
T 3sb4_A          130 QIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTI  209 (329)
T ss_dssp             EBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEE
T ss_pred             EcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCccccceEEE
Confidence            777777777777777766655555544310    000000011100000000000               00000000  


Q ss_pred             -e-----eeccccCCccccceeecCCCCceeeccCCCCCCCCCCCeEEecCCcceeeeccccCCCCccc-EEEccCCccc
Q psy15407        205 -I-----RVSYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLR-IISLHGNDIS  277 (604)
Q Consensus       205 -~-----~~~~~~~~~~~~L~~L~Ls~N~i~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~-~L~Ls~N~l~  277 (604)
                       .     ....+. ....+|+.|+|++|+|+.|+..+|.++.+|+.|+|.+| |+.|+..+|.++.+|+ .|+|.+ .|+
T Consensus       210 ~~~l~~~~~~~l~-~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~  286 (329)
T 3sb4_A          210 EGKLDNADFKLIR-DYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVT  286 (329)
T ss_dssp             EECCCHHHHHHHH-HHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCC
T ss_pred             eeeecHHHHHHHH-HhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cce
Confidence             0     000000 01248999999999999999999999999999999998 9999999999999999 999998 899


Q ss_pred             cCCcccccCcccceeeeccCCCcc
Q psy15407        278 MIPEGAFADLHAITHLAIGGNPLY  301 (604)
Q Consensus       278 ~i~~~~f~~l~~L~~L~L~~Npl~  301 (604)
                      .|++.+|..+++|+.|+|.+|.+.
T Consensus       287 ~I~~~aF~~c~~L~~l~l~~n~i~  310 (329)
T 3sb4_A          287 AIEFGAFMGCDNLRYVLATGDKIT  310 (329)
T ss_dssp             EECTTTTTTCTTEEEEEECSSCCC
T ss_pred             EEchhhhhCCccCCEEEeCCCccC
Confidence            999999999999999999988774

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=99.60  E-value=2.5e-16  Score=136.31  Aligned_cols=106  Identities=22%  Similarity=0.398  Sum_probs=89.4

Q ss_pred             CeEEecCCcce--eeeccccCCCCcccEEEccCCccccCCcccccCcccceeeeccCCCcccccCCCcccccccccc--c
Q psy15407        243 SQLILSYNKLQ--CIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIGGNPLYCDCGLAWLSEWVKRDY--V  318 (604)
Q Consensus       243 ~~L~Ls~N~l~--~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~Npl~CdC~l~~l~~~~~~~~--~  318 (604)
                      ..++.+++.|+  .|+.. +  -.+|++|+|++|+|+.|++++|..+++|+.|+|++|||.|||.+.||..|++...  .
T Consensus        11 ~~v~Cs~~~L~~~~vP~~-l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~CdC~l~~l~~wl~~~~~~~   87 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLPTA-F--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDCRLVPLRAWLAGRPERA   87 (130)
T ss_dssp             TEEECCSSCCCTTTSCSC-C--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCSGGGHHHHHHHHTSSCSG
T ss_pred             CEEEeCCCCCccccCCCC-C--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeeccCccHHHHHHHHhCcccc
Confidence            36777788877  77543 2  1468999999999999999999999999999999999999999999999998653  2


Q ss_pred             cCCccccCCCCcccccccccCCCCceeecCccc
Q psy15407        319 EPGIARCTEPASMRDKLLLTAPASSFQCKEKVS  351 (604)
Q Consensus       319 ~~~~~~C~~P~~l~g~~l~~~~~~~~~C~~~~~  351 (604)
                      ....++|++|..++|+.+.++...+|.|.+...
T Consensus        88 ~~~~~~C~~P~~l~g~~l~~l~~~~l~c~C~~~  120 (130)
T 3rfe_A           88 PYRDLRCVAPPALRGRLLPYLAEDELRAACAPG  120 (130)
T ss_dssp             GGTTCBCCBSTTTTTCBGGGCCHHHHHHTTCC-
T ss_pred             cccCcEeCcChHHcCCCcccCCHHHhhCcCCCC
Confidence            345689999999999999999999999876543

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.60  E-value=5.5e-16  Score=141.33  Aligned_cols=132  Identities=19%  Similarity=0.120  Sum_probs=115.1

Q ss_pred             CCeEEcCCCCCC--cCCCCC--CccCcEEecCCCcceeecCCCccCCCCCCcEEeCCCCcceecCCCcCCCcccCCcCCC
Q psy15407         96 GTRVDCSQRGLK--EIPKDI--PLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGD  171 (604)
Q Consensus        96 ~~~l~cs~~~L~--~iP~~l--~~~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~l  171 (604)
                      -+.|+++++.|+  .+|..+  ...+++|+|++|.|+.+ .  .|..+++|++|+|++|+|+.+.+..|..++       
T Consensus        26 L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~--~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-------   95 (168)
T 2ell_A           26 VRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-S--NLPKLPKLKKLELSENRIFGGLDMLAEKLP-------   95 (168)
T ss_dssp             CSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-S--SCCCCSSCCEEEEESCCCCSCCCHHHHHCT-------
T ss_pred             CCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-h--hhccCCCCCEEECcCCcCchHHHHHHhhCC-------
Confidence            478999999999  899875  46789999999999998 3  399999999999999999986555554443       


Q ss_pred             CCCCCCccccccEEEccCCccccccccccceeeeeeccccCCccccceeecCCCCceeeccC-CCCCCCCCCCeEEecCC
Q psy15407        172 NYCPPKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSN-FTFSPLSKLSQLILSYN  250 (604)
Q Consensus       172 ~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~i~~l~~-~~f~~l~~L~~L~Ls~N  250 (604)
                                                                   +|++|+|++|+|+.++. ..|..+++|+.|+|++|
T Consensus        96 ---------------------------------------------~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N  130 (168)
T 2ell_A           96 ---------------------------------------------NLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNC  130 (168)
T ss_dssp             ---------------------------------------------TCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSS
T ss_pred             ---------------------------------------------CCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCC
Confidence                                                         78899999999999864 68899999999999999


Q ss_pred             cceeeec---cccCCCCcccEEEccCCccccCCcc
Q psy15407        251 KLQCIDR---DALAGLKSLRIISLHGNDISMIPEG  282 (604)
Q Consensus       251 ~l~~i~~---~~f~~l~~L~~L~Ls~N~l~~i~~~  282 (604)
                      +|+.+++   ..|..+++|+.|++++|.+..+|..
T Consensus       131 ~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~  165 (168)
T 2ell_A          131 EVTNLNDYRESVFKLLPQLTYLDGYDREDQEAPDS  165 (168)
T ss_dssp             GGGTSTTHHHHHHTTCSSCCEETTEETTSCBCCSS
T ss_pred             cCcchHHHHHHHHHhCccCcEecCCCCChhhcccc
Confidence            9999976   6899999999999999999998864

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.60  E-value=2.1e-15  Score=161.10  Aligned_cols=186  Identities=21%  Similarity=0.184  Sum_probs=115.3

Q ss_pred             CeEEcCCCCCCcCCC-CCCccCcEEecCCCcceeecCCCccCCCCCCcEEeCCCCcceecCCCcCCCcccCCcCCCCCCC
Q psy15407         97 TRVDCSQRGLKEIPK-DIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDNYCP  175 (604)
Q Consensus        97 ~~l~cs~~~L~~iP~-~l~~~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~l~~~~  175 (604)
                      +.|+++ +.+..++. .-...+++|+|++|.|+.++.   |..+++|++|+|++|.|+.+.+  +..+++|+.|++++|.
T Consensus       159 ~~L~l~-~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~---l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~  232 (466)
T 1o6v_A          159 QQLSFG-NQVTDLKPLANLTTLERLDISSNKVSDISV---LAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQ  232 (466)
T ss_dssp             SEEEEE-ESCCCCGGGTTCTTCCEEECCSSCCCCCGG---GGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSC
T ss_pred             cEeecC-CcccCchhhccCCCCCEEECcCCcCCCChh---hccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCC
Confidence            455554 34444432 113456777788777777643   6777778888888777777665  6667777777777776


Q ss_pred             CCccccccEEEccCCccccccccccceeeeeeccccCCccccceeecCCCCceeeccCCCCCCCCCCCeEEecCCcceee
Q psy15407        176 PKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCI  255 (604)
Q Consensus       176 ~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~i~~l~~~~f~~l~~L~~L~Ls~N~l~~i  255 (604)
                      +..+..+.   ....+..+.+..+.+.....    .... .+|+.|+|++|.|+.+++  +..+++|+.|+|++|+|+.+
T Consensus       233 l~~~~~l~---~l~~L~~L~l~~n~l~~~~~----~~~l-~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~  302 (466)
T 1o6v_A          233 LKDIGTLA---SLTNLTDLDLANNQISNLAP----LSGL-TKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDI  302 (466)
T ss_dssp             CCCCGGGG---GCTTCSEEECCSSCCCCCGG----GTTC-TTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCC
T ss_pred             cccchhhh---cCCCCCEEECCCCccccchh----hhcC-CCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCc
Confidence            54332111   11122222222222221111    1111 367777777777777765  66777778888888777777


Q ss_pred             eccccCCCCcccEEEccCCccccCCcccccCcccceeeeccCCCccc
Q psy15407        256 DRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIGGNPLYC  302 (604)
Q Consensus       256 ~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~Npl~C  302 (604)
                      ++  +..+++|+.|+|++|+|+.+++  +..+++|+.|+|++|++.-
T Consensus       303 ~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~  345 (466)
T 1o6v_A          303 SP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSD  345 (466)
T ss_dssp             GG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCC
T ss_pred             hh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCC
Confidence            54  6677777788888887777765  5677777777777777654

>1uzk_A Fibrillin-1; glycoprotein, extra-cellular matrix, calcium, TB domain, disease mutation, extracellular matrix, polymorphism, cbegf domain; 1.35A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.23.1.1 PDB: 1uzj_A 1uzp_A 1uzq_A

Probab=99.60  E-value=3.6e-17  Score=147.88  Aligned_cols=137  Identities=26%  Similarity=0.680  Sum_probs=97.2

Q ss_pred             CCCcCC-CCCCCCCcEEEeCCCCeEEecCCCCC----CCCcccCCCc--CCCCCCCCC--CCCceeecCC----CeEEec
Q psy15407        435 NIDDCL-SHKCENNATCVDLIQAYECRCAPGFQ----GEFCQTKTPF--CAGEYNPCR--NGARCLDHFS----HYTCEC  501 (604)
Q Consensus       435 ~~~~C~-~~~C~~~~~C~~~~~~~~C~C~~g~~----g~~C~~~~~~--C~~~~~~C~--~~~~C~~~~~----~~~C~C  501 (604)
                      +|++|. ..+|. +++|+++.++|+|.|++||+    |..|+ ++++  |.....+|.  +++.|++..+    +|+|.|
T Consensus         2 dideC~~~~~C~-~~~C~n~~gsy~C~C~~Gy~~~~~g~~C~-d~~~~~C~~~~~~c~~~~~~~C~~~~~~~~~~~~C~C   79 (162)
T 1uzk_A            2 DVNECLDPTTCI-SGNCVNTPGSYICDCPPDFELNPTRVGCV-DTRSGNCYLDIRPRGDNGDTACSNEIGVGVSKASCCC   79 (162)
T ss_dssp             CCCGGGSTTSSB-TSEEEEETTEEEEECCTTCEECTTSSBEE-CCCCEEEEEEC----------CEEEEEEEECHHHHHT
T ss_pred             ccccCCCCCCCC-CCEeECCCCCEEEeCCCCCeECCCCCccc-CCCCCcccCCCcccCCCCCCcccCCcCCcccCceeeC
Confidence            688888 47886 68999999999999999998    78886 5554  654434442  4678988776    799999


Q ss_pred             CCCCc-CCcCcccCCCCCCCCCCCCCEEeeCCCCeEeeeCC--CCccCCCCcCcccccCCCCCCCCCC--CCCCCCceeC
Q psy15407        502 TPGFS-GVNCTVNVDDCVNHMCQNGGTCVDGINDYTCKCEG--DFVGKFCEIAPFVAMMYPQTSPCQH--HDCKNGICFQ  576 (604)
Q Consensus       502 ~~g~~-g~~c~~~~~~C~~~~C~~~~~C~~~~~~y~C~C~~--G~~G~~C~~~~~~~~~~~~~~~C~~--~~C~~g~C~~  576 (604)
                      ++||. |..|+.         |..     ...++|+|.|++  ||+|..-...      ...+++|..  +.|.++.|++
T Consensus        80 ~~G~~~~~~C~~---------C~~-----~~~~~y~C~C~~g~G~~~~~~~~~------c~dideC~~~~~~C~~g~C~n  139 (162)
T 1uzk_A           80 SLGKAWGTPCEM---------CPA-----VNTSEYKILCPGGEGFRPNPITVI------LEDIDECQELPGLCQGGKCIN  139 (162)
T ss_dssp             TTCCEETTTTEE---------CCC-----TTSHHHHHHCTTCTTEEECTTTCC------EEECCHHHHCGGGGBTSEEEE
T ss_pred             CCCCCcCCCccc---------CCC-----CCCCCceeECCCCCCcccCCCCCc------cCccccccCCCCCcCCCEeEc
Confidence            99998 666641         222     246789999998  9998631110      012677864  4588877999


Q ss_pred             CCCCCCeeeecCCCCcCCC
Q psy15407        577 PQGSNDYLCKCAPGYSGKE  595 (604)
Q Consensus       577 ~~g~~~~~C~C~~G~~G~~  595 (604)
                      +.  ++|+|.|++||+|..
T Consensus       140 ~~--gsy~C~C~~Gy~g~~  156 (162)
T 1uzk_A          140 TF--GSFQCRCPTGYYLNE  156 (162)
T ss_dssp             CS--SCEEEECCTTCCBCT
T ss_pred             CC--CCEEeeCCCCccCCC
Confidence            99  789999999999865

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.60  E-value=1.1e-15  Score=165.68  Aligned_cols=192  Identities=18%  Similarity=0.166  Sum_probs=139.5

Q ss_pred             CCeEEcCCCCCCcCCCCCCccCcEEecCCCcceeecCCCccCCCCCCcEEeCCCCcceecCCCcCCCcccCCcCCCCCCC
Q psy15407         96 GTRVDCSQRGLKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDNYCP  175 (604)
Q Consensus        96 ~~~l~cs~~~L~~iP~~l~~~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~l~~~~  175 (604)
                      -+.|++++|.|+.|| .++..++.|+|++|.|+.|+.   |.+  +|++|+|++|+|+.|+.    .+++|+.|+|++|.
T Consensus        82 L~~L~Ls~N~l~~ip-~~l~~L~~L~Ls~N~l~~ip~---l~~--~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N~  151 (571)
T 3cvr_A           82 ITVLEITQNALISLP-ELPASLEYLDACDNRLSTLPE---LPA--SLKHLDVDNNQLTMLPE----LPALLEYINADNNQ  151 (571)
T ss_dssp             CSEEECCSSCCSCCC-CCCTTCCEEECCSSCCSCCCC---CCT--TCCEEECCSSCCSCCCC----CCTTCCEEECCSSC
T ss_pred             CCEEECcCCCCcccc-cccCCCCEEEccCCCCCCcch---hhc--CCCEEECCCCcCCCCCC----cCccccEEeCCCCc
Confidence            579999999999999 788899999999999999865   554  99999999999999877    57899999999997


Q ss_pred             CCccccccEEEccCCccccccccccceeeeeeccccCCccccceeecCCCCceeeccCCCCCCCCCC-------CeEEec
Q psy15407        176 PKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKL-------SQLILS  248 (604)
Q Consensus       176 ~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~i~~l~~~~f~~l~~L-------~~L~Ls  248 (604)
                      +..++.     ....+..+.+..+.+.....   +    ..+|++|+|++|+|+.++.  |..  +|       +.|+|+
T Consensus       152 l~~lp~-----~l~~L~~L~Ls~N~L~~lp~---l----~~~L~~L~Ls~N~L~~lp~--~~~--~L~~~~~~L~~L~Ls  215 (571)
T 3cvr_A          152 LTMLPE-----LPTSLEVLSVRNNQLTFLPE---L----PESLEALDVSTNLLESLPA--VPV--RNHHSEETEIFFRCR  215 (571)
T ss_dssp             CSCCCC-----CCTTCCEEECCSSCCSCCCC---C----CTTCCEEECCSSCCSSCCC--CC----------CCEEEECC
T ss_pred             cCcCCC-----cCCCcCEEECCCCCCCCcch---h----hCCCCEEECcCCCCCchhh--HHH--hhhcccccceEEecC
Confidence            765443     12233334444443333211   1    2599999999999999887  543  67       999999


Q ss_pred             CCcceeeeccccCCCCcccEEEccCCccccCCcccccCcccc-------eeeeccC-------CCcccccCCCccccccc
Q psy15407        249 YNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAI-------THLAIGG-------NPLYCDCGLAWLSEWVK  314 (604)
Q Consensus       249 ~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L-------~~L~L~~-------Npl~CdC~l~~l~~~~~  314 (604)
                      +|+|+.|+...+ .+++|+.|+|++|+|+...+..|..+..+       ..+++++       || .|+|.+.||..+.+
T Consensus       216 ~N~l~~lp~~l~-~l~~L~~L~L~~N~l~~~~p~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~p-~~~~~~~Wl~~~~~  293 (571)
T 3cvr_A          216 ENRITHIPENIL-SLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRP-LADAVTAWFPENKQ  293 (571)
T ss_dssp             SSCCCCCCGGGG-GSCTTEEEECCSSSCCHHHHHHHHHHHHSCC---CEEECCC----------C-CSHHHHTTCC----
T ss_pred             CCcceecCHHHh-cCCCCCEEEeeCCcCCCcCHHHHHHhhcCccccCCeeEEeeccccccccccc-chhhHHHHhhhhcc
Confidence            999999966555 49999999999999997666555554321       2234444       55 79999999987764


Q ss_pred             c
Q psy15407        315 R  315 (604)
Q Consensus       315 ~  315 (604)
                      .
T Consensus       294 ~  294 (571)
T 3cvr_A          294 S  294 (571)
T ss_dssp             -
T ss_pred             c
Confidence            3

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.58  E-value=1.1e-15  Score=143.35  Aligned_cols=128  Identities=16%  Similarity=0.100  Sum_probs=106.1

Q ss_pred             ccCcEEecCCCcceeecCCCccCCCCCCcEEeCCCCcceecCCCcCCCcccCCcCCCCCCCCCccccccEEEccCCcccc
Q psy15407        115 LYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDNYCPPKCTCTVRVLFYDGRAGEC  194 (604)
Q Consensus       115 ~~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~l~~~~~~~~~~l~~l~~~~~~~~~  194 (604)
                      ..++.|+|++|.|+.++ .  +..+++|++|+|++|.++.++  .|..++                              
T Consensus        44 ~~L~~L~l~~n~i~~l~-~--l~~l~~L~~L~l~~n~~~~~~--~l~~l~------------------------------   88 (197)
T 4ezg_A           44 NSLTYITLANINVTDLT-G--IEYAHNIKDLTINNIHATNYN--PISGLS------------------------------   88 (197)
T ss_dssp             HTCCEEEEESSCCSCCT-T--GGGCTTCSEEEEESCCCSCCG--GGTTCT------------------------------
T ss_pred             CCccEEeccCCCccChH-H--HhcCCCCCEEEccCCCCCcch--hhhcCC------------------------------
Confidence            45677777777777775 2  677777788888777665543  333332                              


Q ss_pred             ccccccceeeeeeccccCCccccceeecCCCCceeeccCCCCCCCCCCCeEEecCCcceeeeccccCCCCcccEEEccCC
Q psy15407        195 YIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGN  274 (604)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~i~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N  274 (604)
                                            +|++|+|++|+|+...+..|..+++|++|+|++|+|+...+..|..+++|++|+|++|
T Consensus        89 ----------------------~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n  146 (197)
T 4ezg_A           89 ----------------------NLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYN  146 (197)
T ss_dssp             ----------------------TCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSC
T ss_pred             ----------------------CCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCC
Confidence                                  7889999999999877778999999999999999999877788999999999999999


Q ss_pred             c-cccCCcccccCcccceeeeccCCCcc
Q psy15407        275 D-ISMIPEGAFADLHAITHLAIGGNPLY  301 (604)
Q Consensus       275 ~-l~~i~~~~f~~l~~L~~L~L~~Npl~  301 (604)
                      + |+.++  .|..+++|+.|+|++|++.
T Consensus       147 ~~i~~~~--~l~~l~~L~~L~l~~n~i~  172 (197)
T 4ezg_A          147 GAITDIM--PLKTLPELKSLNIQFDGVH  172 (197)
T ss_dssp             TBCCCCG--GGGGCSSCCEEECTTBCCC
T ss_pred             CCccccH--hhcCCCCCCEEECCCCCCc
Confidence            8 98887  4889999999999999875

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.58  E-value=1.4e-15  Score=156.19  Aligned_cols=210  Identities=19%  Similarity=0.160  Sum_probs=153.0

Q ss_pred             CCeEEcCCCCCCcCCCCC---CccCcEEecCCCcc-eeecCCCccCCCCCCcE-EeCCCCcceecCCCcCCCcccCCcCC
Q psy15407         96 GTRVDCSQRGLKEIPKDI---PLYTTELILNDNEI-GKIKSDGLFGRLPNLIK-LDLRRNQVTGIEDNAFEGENDQGCLG  170 (604)
Q Consensus        96 ~~~l~cs~~~L~~iP~~l---~~~~~~L~L~~N~i-~~i~~~~~f~~l~~L~~-L~Ls~N~i~~i~~~~f~~l~~L~~L~  170 (604)
                      .+.|++++|+|++||...   ...+++|+|++|+| +.|+. ++|.+|++|++ ++++.|+|+.|++++|.++++|+.|+
T Consensus        32 l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~-~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~  110 (350)
T 4ay9_X           32 AIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEA-DVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLL  110 (350)
T ss_dssp             CSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECT-TSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEE
T ss_pred             CCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccCh-hHhhcchhhhhhhcccCCcccccCchhhhhcccccccc
Confidence            478999999999999864   35679999999998 45655 56999999875 67778999999999999999999999


Q ss_pred             CCCCCCCccc--------cccEEEccCCcccccccccc-----------ceeeeeeccccC--CccccceeecCC-CCce
Q psy15407        171 DNYCPPKCTC--------TVRVLFYDGRAGECYIAVEL-----------FSSRIRVSYYVG--NYPVSTMYRDLS-NNQI  228 (604)
Q Consensus       171 l~~~~~~~~~--------~l~~l~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~--~~~~~L~~L~Ls-~N~i  228 (604)
                      +++|.+..+.        .+..+.+........+....           ......+..+..  ....+|+.|+|+ +|.|
T Consensus       111 l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l  190 (350)
T 4ay9_X          111 ISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNL  190 (350)
T ss_dssp             EEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTC
T ss_pred             ccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhccccchhHHhhccCCcc
Confidence            9887554332        22233332221111111110           001111111111  112478899997 5899


Q ss_pred             eeccCCCCCCCCCCCeEEecCCcceeeeccccCCCCcccEEEccCCccccCCcccccCcccceeeeccCCCcccccCCCc
Q psy15407        229 GFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIGGNPLYCDCGLAW  308 (604)
Q Consensus       229 ~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~Npl~CdC~l~~  308 (604)
                      +.|++++|..+++|++|+|++|+|+.|++..|.+|++|+.+++  +.++.+|.  +..+++|+.+++. |+++|.|-..|
T Consensus       191 ~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~~L~~L~~l~~--~~l~~lP~--l~~l~~L~~l~l~-~~~~c~~~~~~  265 (350)
T 4ay9_X          191 EELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST--YNLKKLPT--LEKLVALMEASLT-YPSHCCAFANW  265 (350)
T ss_dssp             CCCCTTTTTTEECCSEEECTTSCCCCCCSSSCTTCCEEECTTC--TTCCCCCC--TTTCCSCCEEECS-CHHHHHHHHHS
T ss_pred             cCCCHHHhccCcccchhhcCCCCcCccChhhhccchHhhhccC--CCcCcCCC--chhCcChhhCcCC-CCccccchhhh
Confidence            9999999999999999999999999999988887777766544  56888885  7889999999996 88999876555


Q ss_pred             ccc
Q psy15407        309 LSE  311 (604)
Q Consensus       309 l~~  311 (604)
                      ..+
T Consensus       266 ~~~  268 (350)
T 4ay9_X          266 RRQ  268 (350)
T ss_dssp             CCC
T ss_pred             hhh
Confidence            543

>2bou_A EGF-like module containing mucin-like hormone receptor-like 2 precursor; CD97, CD55, 7TM, calcium-binding, cell adhesion, EGF-LI domain; 1.90A {Homo sapiens} PDB: 2bo2_A 2box_A

Probab=99.58  E-value=9.8e-16  Score=135.40  Aligned_cols=114  Identities=24%  Similarity=0.740  Sum_probs=72.0

Q ss_pred             CCCCCCCeeeeCCCCceEeeCCCCCcC---------CCCCcCCCcCCCC---CCCCCcEEEeCCCCeEEecCCCCCCCCc
Q psy15407        403 NPCRNSGTCKLLEEGRFNCECAPGYTG---------DRCEINIDDCLSH---KCENNATCVDLIQAYECRCAPGFQGEFC  470 (604)
Q Consensus       403 ~~C~~~~~C~~~~~~~~~C~C~~g~~g---------~~C~~~~~~C~~~---~C~~~~~C~~~~~~~~C~C~~g~~g~~C  470 (604)
                      .+|.++++|++    .|.|.|++||+|         ..|+ ++++|...   +|.++++|+++.++|+|.|++||+|..+
T Consensus         7 ~~C~~~~~C~~----~~~C~C~~G~~g~~~~~~~~~~~C~-dideC~~~~~~~C~~~~~C~n~~g~y~C~C~~Gy~g~~~   81 (143)
T 2bou_A            7 RWCPQDSSCVN----ATACRCNPGFSSFSEIITTPMETCD-DINECATLSKVSCGKFSDCWNTEGSYDCVCSPGYEPVSG   81 (143)
T ss_dssp             TTCCTTEEESS----SSCEEECTTEECSSSSBCSTTCCCE-ECCGGGC----CCCTTEEEEECSSCEEEEECTTEEETTC
T ss_pred             CcCCCCCEEcC----CCEEeCCCCCcCccccccCCCCcCC-ccccccCCCCCCCCCCCEEEcCCCCeEeECCCCcccCcC
Confidence            45666666643    266666666665         3453 55666554   5655566666666666666666665544


Q ss_pred             ccCCCcCCCCCCCCCCCCceeecCCCeEEecCCCCcCCcCcccCCCCCC--CCCCCCCEEeeCCCCeEeeeCCCCccCCC
Q psy15407        471 QTKTPFCAGEYNPCRNGARCLDHFSHYTCECTPGFSGVNCTVNVDDCVN--HMCQNGGTCVDGINDYTCKCEGDFVGKFC  548 (604)
Q Consensus       471 ~~~~~~C~~~~~~C~~~~~C~~~~~~~~C~C~~g~~g~~c~~~~~~C~~--~~C~~~~~C~~~~~~y~C~C~~G~~G~~C  548 (604)
                      +...          .                  ...+..|. ++++|..  ++|.++++|+++.++|+|.|++||+|...
T Consensus        82 ~~~~----------~------------------~~~~~~C~-dideC~~~~~~C~~~~~C~n~~g~y~C~C~~Gy~g~~~  132 (143)
T 2bou_A           82 AKTF----------K------------------NESENTCQ-DVDECSSGQHQCDSSTVCFNTVGSYSCRCRPGWKPRHG  132 (143)
T ss_dssp             CSCB----------S------------------SGGGCCEE-ECCHHHHTCCCCCTTSEEEECSSCEEEECCSSSCBCTT
T ss_pred             cccc----------c------------------cCCCCCcC-CccCccCcCCCCCCCCEEECCCCCEEeeCCCCcccCCC
Confidence            3110          0                  01122454 6788873  78999999999999999999999998876


Q ss_pred             Cc
Q psy15407        549 EI  550 (604)
Q Consensus       549 ~~  550 (604)
                      ..
T Consensus       133 ~~  134 (143)
T 2bou_A          133 IP  134 (143)
T ss_dssp             CC
T ss_pred             Cc
Confidence            43

>1uzk_A Fibrillin-1; glycoprotein, extra-cellular matrix, calcium, TB domain, disease mutation, extracellular matrix, polymorphism, cbegf domain; 1.35A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.23.1.1 PDB: 1uzj_A 1uzp_A 1uzq_A

Probab=99.57  E-value=1e-16  Score=144.86  Aligned_cols=132  Identities=24%  Similarity=0.675  Sum_probs=98.2

Q ss_pred             cCCCCC-CCCCCCCCeeeeCCCCceEeeCCCCCc----CCCCCcCCCc--CCCC--CC--CCCcEEEeCCC----CeEEe
Q psy15407        396 MIDACY-GNPCRNSGTCKLLEEGRFNCECAPGYT----GDRCEINIDD--CLSH--KC--ENNATCVDLIQ----AYECR  460 (604)
Q Consensus       396 ~~~~C~-~~~C~~~~~C~~~~~~~~~C~C~~g~~----g~~C~~~~~~--C~~~--~C--~~~~~C~~~~~----~~~C~  460 (604)
                      +||+|. .+||. +++|++ ..++|+|.|++||+    |..|+ ++++  |...  +|  .++++|++..+    +|.|.
T Consensus         2 dideC~~~~~C~-~~~C~n-~~gsy~C~C~~Gy~~~~~g~~C~-d~~~~~C~~~~~~c~~~~~~~C~~~~~~~~~~~~C~   78 (162)
T 1uzk_A            2 DVNECLDPTTCI-SGNCVN-TPGSYICDCPPDFELNPTRVGCV-DTRSGNCYLDIRPRGDNGDTACSNEIGVGVSKASCC   78 (162)
T ss_dssp             CCCGGGSTTSSB-TSEEEE-ETTEEEEECCTTCEECTTSSBEE-CCCCEEEEEEC----------CEEEEEEEECHHHHH
T ss_pred             ccccCCCCCCCC-CCEeEC-CCCCEEEeCCCCCeECCCCCccc-CCCCCcccCCCcccCCCCCCcccCCcCCcccCceee
Confidence            578887 47886 689987 47889999999998    77887 6665  7642  34  35788998776    79999


Q ss_pred             cCCCCC-CCCcccCCCcCCCCCCCCCCCCceeecCCCeEEecCC--CCcCC---cCcccCCCCCC--CCCCCCCEEeeCC
Q psy15407        461 CAPGFQ-GEFCQTKTPFCAGEYNPCRNGARCLDHFSHYTCECTP--GFSGV---NCTVNVDDCVN--HMCQNGGTCVDGI  532 (604)
Q Consensus       461 C~~g~~-g~~C~~~~~~C~~~~~~C~~~~~C~~~~~~~~C~C~~--g~~g~---~c~~~~~~C~~--~~C~~~~~C~~~~  532 (604)
                      |++||. |..|+.           |..     +..++|+|.|++  ||+|.   .+.+++|+|..  ++|.+ ++|+++.
T Consensus        79 C~~G~~~~~~C~~-----------C~~-----~~~~~y~C~C~~g~G~~~~~~~~~c~dideC~~~~~~C~~-g~C~n~~  141 (162)
T 1uzk_A           79 CSLGKAWGTPCEM-----------CPA-----VNTSEYKILCPGGEGFRPNPITVILEDIDECQELPGLCQG-GKCINTF  141 (162)
T ss_dssp             TTTCCEETTTTEE-----------CCC-----TTSHHHHHHCTTCTTEEECTTTCCEEECCHHHHCGGGGBT-SEEEECS
T ss_pred             CCCCCCcCCCccc-----------CCC-----CCCCCceeECCCCCCcccCCCCCccCccccccCCCCCcCC-CEeEcCC
Confidence            999998 666641           221     234679999998  99986   34468999974  46985 7999999


Q ss_pred             CCeEeeeCCCCccCC
Q psy15407        533 NDYTCKCEGDFVGKF  547 (604)
Q Consensus       533 ~~y~C~C~~G~~G~~  547 (604)
                      |+|+|.|++||+|..
T Consensus       142 gsy~C~C~~Gy~g~~  156 (162)
T 1uzk_A          142 GSFQCRCPTGYYLNE  156 (162)
T ss_dssp             SCEEEECCTTCCBCT
T ss_pred             CCEEeeCCCCccCCC
Confidence            999999999999864

>2bou_A EGF-like module containing mucin-like hormone receptor-like 2 precursor; CD97, CD55, 7TM, calcium-binding, cell adhesion, EGF-LI domain; 1.90A {Homo sapiens} PDB: 2bo2_A 2box_A

Probab=99.57  E-value=1.6e-15  Score=134.01  Aligned_cols=65  Identities=29%  Similarity=0.790  Sum_probs=55.8

Q ss_pred             CCCCCCCCeeecCCCCceeeeCCCCCcC---------CCCcccCCCCCCC---CCCCCCeeeeCCCCceEeeCCCCCcCC
Q psy15407        363 KSPCTNQGVCEPLPERQYQCRCTPGYHG---------QHCEFMIDACYGN---PCRNSGTCKLLEEGRFNCECAPGYTGD  430 (604)
Q Consensus       363 ~~~C~~~g~C~~~~~~~~~C~C~~g~~G---------~~c~~~~~~C~~~---~C~~~~~C~~~~~~~~~C~C~~g~~g~  430 (604)
                      +.+|.++++|++    .|+|.|++||+|         ..|+ ++++|...   +|.++++|++ ..++|.|.|++||+|.
T Consensus         6 ~~~C~~~~~C~~----~~~C~C~~G~~g~~~~~~~~~~~C~-dideC~~~~~~~C~~~~~C~n-~~g~y~C~C~~Gy~g~   79 (143)
T 2bou_A            6 ARWCPQDSSCVN----ATACRCNPGFSSFSEIITTPMETCD-DINECATLSKVSCGKFSDCWN-TEGSYDCVCSPGYEPV   79 (143)
T ss_dssp             CTTCCTTEEESS----SSCEEECTTEECSSSSBCSTTCCCE-ECCGGGC----CCCTTEEEEE-CSSCEEEEECTTEEET
T ss_pred             cCcCCCCCEEcC----CCEEeCCCCCcCccccccCCCCcCC-ccccccCCCCCCCCCCCEEEc-CCCCeEeECCCCcccC
Confidence            368999999985    399999999998         4785 89999986   8999999988 4789999999999998


Q ss_pred             CCC
Q psy15407        431 RCE  433 (604)
Q Consensus       431 ~C~  433 (604)
                      .++
T Consensus        80 ~~~   82 (143)
T 2bou_A           80 SGA   82 (143)
T ss_dssp             TCC
T ss_pred             cCc
Confidence            554

>2gy5_A Angiopoietin-1 receptor; ligand-binding domain, transferase; HET: NAG NDG; 2.90A {Homo sapiens} PDB: 2gy7_B*

Probab=99.57  E-value=2e-15  Score=156.59  Aligned_cols=190  Identities=22%  Similarity=0.440  Sum_probs=124.7

Q ss_pred             CCCceeeeCCCCCcCCCCcccCCCCCCCCCCCCCeee--eC--------CCCceEeeCCCCCcCCCCCcCCCcCCCCCCC
Q psy15407        376 PERQYQCRCTPGYHGQHCEFMIDACYGNPCRNSGTCK--LL--------EEGRFNCECAPGYTGDRCEINIDDCLSHKCE  445 (604)
Q Consensus       376 ~~~~~~C~C~~g~~G~~c~~~~~~C~~~~C~~~~~C~--~~--------~~~~~~C~C~~g~~g~~C~~~~~~C~~~~C~  445 (604)
                      ..|+|.|.|+.+|.+..++..+..+.   +...+.+.  ..        ....+.|.|++||.|+.|+.   .|  .+|.
T Consensus       135 ~nGs~~~~~p~~~~~~~~~~~~~~~~---~~d~g~y~~~~~~g~~~~~~~~~~~~c~C~~g~~G~~C~~---~C--~~C~  206 (423)
T 2gy5_A          135 KNGSFIHSVPRHEVPDILEVHLPHAQ---PQDAGVYSARYIGGNLFTSAFTRLIVRRCEAQKWGPECNH---LC--TACM  206 (423)
T ss_dssp             ETTEEEEEECGGGCCSEEEEEETTCC---GGGCEEEEEEETTCCGGGCEEEEEEECSSCTTEESTTSCE---EC--CCCC
T ss_pred             cCCeEeeccCccccCCeEEeccCcCC---CCCCCeEeeEECCCcEeccccccccCCcCCCCCCCCCCCC---CC--CCCC
Confidence            34678899988888876653322111   11112111  00        11244689999999999973   45  3788


Q ss_pred             CCcEEEeCCCCeEEecCCCCCCCCcccCC----------CcCCCCCCCCCCCCceeecCCCeEEecCCCCcCCcCccc--
Q psy15407        446 NNATCVDLIQAYECRCAPGFQGEFCQTKT----------PFCAGEYNPCRNGARCLDHFSHYTCECTPGFSGVNCTVN--  513 (604)
Q Consensus       446 ~~~~C~~~~~~~~C~C~~g~~g~~C~~~~----------~~C~~~~~~C~~~~~C~~~~~~~~C~C~~g~~g~~c~~~--  513 (604)
                      ++|+|.+  +.+.|.|++||.|..|+...          +.|. ..+.|.+++.|.  .++|+|.|++||+|..|+..  
T Consensus       207 ~~G~C~~--~~g~C~C~~G~~G~~Ce~~C~~g~~g~~C~~~C~-~~~~C~~~g~C~--~~~~~C~C~~G~~G~~C~~~C~  281 (423)
T 2gy5_A          207 NNGVCHE--DTGECICPPGFMGRTCEKACELHTFGRTCKERCS-GQEGCKSYVFCL--PDPYGCSCATGWKGLQCNEACH  281 (423)
T ss_dssp             TTCEECT--TTCCEECCTTEESTTSCEECCTTEESTTSCEECC-STTTTTTCCEEE--TTTTEEECCBTCBSGGGCBCCC
T ss_pred             CCCEEEC--CCCcEeCCCCccCCCcccccCCCCCCCCcCccCC-CCCCCCCCCEEC--CCCCeEEeCCCcccccccCccC
Confidence            9999976  45789999999999997531          1333 234677777784  46789999999999998741  


Q ss_pred             ----CCCCC-CCCCCCCCEEeeCCCCeEeeeCCCCccCCCCcCcccccCCCCCCCCCCCCCCCCceeCCCCCCCeeeecC
Q psy15407        514 ----VDDCV-NHMCQNGGTCVDGINDYTCKCEGDFVGKFCEIAPFVAMMYPQTSPCQHHDCKNGICFQPQGSNDYLCKCA  588 (604)
Q Consensus       514 ----~~~C~-~~~C~~~~~C~~~~~~y~C~C~~G~~G~~C~~~~~~~~~~~~~~~C~~~~C~~g~C~~~~g~~~~~C~C~  588 (604)
                          -+.|. .-+|.++|+|.+..   .|.|++||+|.+|+....         ...     ........    -.|.|.
T Consensus       282 ~G~~G~~C~~~C~C~ngg~C~~~~---~C~C~~G~~G~~Ce~~~~---------~~~-----~~~~~~~~----~~~~c~  340 (423)
T 2gy5_A          282 PGFYGPDCKLRCSCNNGEMCDRFQ---GCLCSPGWQGLQCEREGI---------PRM-----TPKIVDLP----DHIEVN  340 (423)
T ss_dssp             TTBCSBTTCCBCCCTTCCEEETTT---EEECCTTCBSTTSCBCSS---------CCC-----CCEECSCC----SBCCEE
T ss_pred             CCCcCCcccccccCCCCCEecCCC---ceECCCCCcCCCCccCcc---------CCc-----CcceecCC----CeEEeC
Confidence                12232 22788999998764   499999999999996411         000     11122222    258999


Q ss_pred             CCCcCCCCCCC
Q psy15407        589 PGYSGKESLLQ  599 (604)
Q Consensus       589 ~G~~G~~C~~~  599 (604)
                      +||.|..|+..
T Consensus       341 ~g~~g~~C~~~  351 (423)
T 2gy5_A          341 SGKFNPICKAS  351 (423)
T ss_dssp             SEEECCEEEEE
T ss_pred             CCccCCccccc
Confidence            99999888754

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.57  E-value=3e-15  Score=164.15  Aligned_cols=78  Identities=26%  Similarity=0.294  Sum_probs=69.2

Q ss_pred             ccceeecCCCCceeeccCCCCCCCCCCCeEEecCCcceeeeccccCCCCcccEEEccCCccccCCcccccCcccceeeec
Q psy15407        216 VSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAI  295 (604)
Q Consensus       216 ~~L~~L~Ls~N~i~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L  295 (604)
                      .+|+.|+|++|+|+.++    ..+++|+.|+|++|+|+.|+.    .+++|+.|+|++|+|+.||. .|..+++|+.|+|
T Consensus       221 ~~L~~L~Ls~N~L~~lp----~~l~~L~~L~Ls~N~L~~lp~----~~~~L~~L~Ls~N~L~~lp~-~l~~l~~L~~L~L  291 (622)
T 3g06_A          221 SGLKELIVSGNRLTSLP----VLPSELKELMVSGNRLTSLPM----LPSGLLSLSVYRNQLTRLPE-SLIHLSSETTVNL  291 (622)
T ss_dssp             TTCCEEECCSSCCSCCC----CCCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCCSCCG-GGGGSCTTCEEEC
T ss_pred             CCCCEEEccCCccCcCC----CCCCcCcEEECCCCCCCcCCc----ccccCcEEeCCCCCCCcCCH-HHhhccccCEEEe
Confidence            47899999999999887    356899999999999999866    56899999999999999986 4889999999999


Q ss_pred             cCCCccc
Q psy15407        296 GGNPLYC  302 (604)
Q Consensus       296 ~~Npl~C  302 (604)
                      ++|+|.-
T Consensus       292 ~~N~l~~  298 (622)
T 3g06_A          292 EGNPLSE  298 (622)
T ss_dssp             CSCCCCH
T ss_pred             cCCCCCC
Confidence            9999974

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.57  E-value=8.6e-15  Score=160.22  Aligned_cols=189  Identities=18%  Similarity=0.193  Sum_probs=134.7

Q ss_pred             CeEEcCCCCCCcCCC-CCCccCcEEecCCCcceeecCCCccCCCCCCcEEeCCCCcceecCC--CcCCCcccCCcCCCCC
Q psy15407         97 TRVDCSQRGLKEIPK-DIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIED--NAFEGENDQGCLGDNY  173 (604)
Q Consensus        97 ~~l~cs~~~L~~iP~-~l~~~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i~~--~~f~~l~~L~~L~l~~  173 (604)
                      +.|+++++.+..++. .-...+++|+|++|+|+.+.+. .|.++++|++|+|++|+|+.++.  ..|..+++|+.|++++
T Consensus       334 ~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~  412 (562)
T 3a79_B          334 KMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQ-GCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSL  412 (562)
T ss_dssp             SEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTT-TCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTT
T ss_pred             eEEEccCCCcccccCccCCCCceEEECCCCccccchhh-hhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCC
Confidence            455666666655442 2344566677777766664332 26666777777777776666543  4566666666666666


Q ss_pred             CCCCccccccEEEccCCccccccccccceeeeeeccccCCccccceeecCCCCceeeccCCCCCCCCCCCeEEecCCcce
Q psy15407        174 CPPKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQ  253 (604)
Q Consensus       174 ~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~i~~l~~~~f~~l~~L~~L~Ls~N~l~  253 (604)
                      |.+..                .++.         ..+ .. ..+|++|+|++|+|+...+..+.  ++|++|+|++|+|+
T Consensus       413 N~l~~----------------~~~~---------~~~-~~-l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~  463 (562)
T 3a79_B          413 NSLNS----------------HAYD---------RTC-AW-AESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM  463 (562)
T ss_dssp             SCCBS----------------CCSS---------CCC-CC-CTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC
T ss_pred             CcCCC----------------ccCh---------hhh-cC-cccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc
Confidence            54321                0000         000 11 23899999999999865544433  69999999999999


Q ss_pred             eeeccccCCCCcccEEEccCCccccCCcccccCcccceeeeccCCCcccccCCCcccc-ccccc
Q psy15407        254 CIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIGGNPLYCDCGLAWLSE-WVKRD  316 (604)
Q Consensus       254 ~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~Npl~CdC~l~~l~~-~~~~~  316 (604)
                      .|++..+ .+++|++|+|++|+|+.||+..|..+++|+.|+|++|||.|+|.+.|+.+ |++..
T Consensus       464 ~ip~~~~-~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~~~~~~~~~~~~~  526 (562)
T 3a79_B          464 SIPKDVT-HLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGIRYLSEWINKH  526 (562)
T ss_dssp             CCCTTTT-SSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCCCHHHHHHHHHHHHHT
T ss_pred             ccChhhc-CCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCCCcchHHHHHHHHHhc
Confidence            9977766 89999999999999999999889999999999999999999999999965 87543

>2gy5_A Angiopoietin-1 receptor; ligand-binding domain, transferase; HET: NAG NDG; 2.90A {Homo sapiens} PDB: 2gy7_B*

Probab=99.56  E-value=7.1e-15  Score=152.54  Aligned_cols=180  Identities=24%  Similarity=0.592  Sum_probs=122.2

Q ss_pred             ceeeeCCCCCcCCCCcccCCCCCCCCCCCCCeeeeCCCCceEeeCCCCCcCCCCCcCCC----------cCC-CCCCCCC
Q psy15407        379 QYQCRCTPGYHGQHCEFMIDACYGNPCRNSGTCKLLEEGRFNCECAPGYTGDRCEINID----------DCL-SHKCENN  447 (604)
Q Consensus       379 ~~~C~C~~g~~G~~c~~~~~~C~~~~C~~~~~C~~~~~~~~~C~C~~g~~g~~C~~~~~----------~C~-~~~C~~~  447 (604)
                      .+.|.|+.||.|..|+.   .|  .||.++|+|..   +.+.|.|++||+|..|+...+          +|. ..+|.++
T Consensus       184 ~~~c~C~~g~~G~~C~~---~C--~~C~~~G~C~~---~~g~C~C~~G~~G~~Ce~~C~~g~~g~~C~~~C~~~~~C~~~  255 (423)
T 2gy5_A          184 LIVRRCEAQKWGPECNH---LC--TACMNNGVCHE---DTGECICPPGFMGRTCEKACELHTFGRTCKERCSGQEGCKSY  255 (423)
T ss_dssp             EEECSSCTTEESTTSCE---EC--CCCCTTCEECT---TTCCEECCTTEESTTSCEECCTTEESTTSCEECCSTTTTTTC
T ss_pred             ccCCcCCCCCCCCCCCC---CC--CCCCCCCEEEC---CCCcEeCCCCccCCCcccccCCCCCCCCcCccCCCCCCCCCC
Confidence            45799999999999985   35  37999999964   467899999999999985322          344 4568888


Q ss_pred             cEEEeCCCCeEEecCCCCCCCCcccC------CCcCCCCCCCCCCCCceeecCCCeEEecCCCCcCCcCcccCCCCCCCC
Q psy15407        448 ATCVDLIQAYECRCAPGFQGEFCQTK------TPFCAGEYNPCRNGARCLDHFSHYTCECTPGFSGVNCTVNVDDCVNHM  521 (604)
Q Consensus       448 ~~C~~~~~~~~C~C~~g~~g~~C~~~------~~~C~~~~~~C~~~~~C~~~~~~~~C~C~~g~~g~~c~~~~~~C~~~~  521 (604)
                      +.|.  .++|.|.|++||.|..|+..      .+.|.. .-+|.+++.|.+..   .|.|++||+|..|+.......   
T Consensus       256 g~C~--~~~~~C~C~~G~~G~~C~~~C~~G~~G~~C~~-~C~C~ngg~C~~~~---~C~C~~G~~G~~Ce~~~~~~~---  326 (423)
T 2gy5_A          256 VFCL--PDPYGCSCATGWKGLQCNEACHPGFYGPDCKL-RCSCNNGEMCDRFQ---GCLCSPGWQGLQCEREGIPRM---  326 (423)
T ss_dssp             CEEE--TTTTEEECCBTCBSGGGCBCCCTTBCSBTTCC-BCCCTTCCEEETTT---EEECCTTCBSTTSCBCSSCCC---
T ss_pred             CEEC--CCCCeEEeCCCcccccccCccCCCCcCCcccc-cccCCCCCEecCCC---ceECCCCCcCCCCccCccCCc---
Confidence            8995  56789999999999999741      122321 12688899998654   399999999999985432211   


Q ss_pred             CCCCCEEeeCCCCeEeeeCCCCccCCCCcCcccccCCCCCCCCCCCCCCCCce-eCCCCCCCeeeecCCCCcCCCC
Q psy15407        522 CQNGGTCVDGINDYTCKCEGDFVGKFCEIAPFVAMMYPQTSPCQHHDCKNGIC-FQPQGSNDYLCKCAPGYSGKES  596 (604)
Q Consensus       522 C~~~~~C~~~~~~y~C~C~~G~~G~~C~~~~~~~~~~~~~~~C~~~~C~~g~C-~~~~g~~~~~C~C~~G~~G~~C  596 (604)
                         .....+.. + .|.|..||.|..|+..           .|... -..... ....|    .|.++.+|.+...
T Consensus       327 ---~~~~~~~~-~-~~~c~~g~~g~~C~~~-----------~~~~~-~~~~~~~~~~~G----~cl~~~~~~~~d~  381 (423)
T 2gy5_A          327 ---TPKIVDLP-D-HIEVNSGKFNPICKAS-----------GWPLP-TNEEMTLVKPDG----TVLHPKDFNHTDH  381 (423)
T ss_dssp             ---CCEECSCC-S-BCCEESEEECCEEEEE-----------CTTCC-CGGGEEEECTTS----CEECCSEEEECSS
T ss_pred             ---CcceecCC-C-eEEeCCCccCCccccc-----------CCcCC-CCceEEEECCCe----EEEeCCCcCcccc
Confidence               11222222 2 4899999999888742           12110 011122 33343    5889998877654

>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_B* 3k72_B*

Probab=99.56  E-value=2.8e-15  Score=162.71  Aligned_cols=163  Identities=32%  Similarity=0.708  Sum_probs=126.3

Q ss_pred             cCCCCCCCCeeecCCCCceeeeCCCCCcCCCCcccCC---------CCCCC----CCCCCCeeeeCCCCceEeeCC----
Q psy15407        362 YKSPCTNQGVCEPLPERQYQCRCTPGYHGQHCEFMID---------ACYGN----PCRNSGTCKLLEEGRFNCECA----  424 (604)
Q Consensus       362 ~~~~C~~~g~C~~~~~~~~~C~C~~g~~G~~c~~~~~---------~C~~~----~C~~~~~C~~~~~~~~~C~C~----  424 (604)
                      .+.+|.++|+|..     ..|.|++||+|..|+.+++         .|...    +|.++|+|..   +  .|.|.    
T Consensus       433 ~s~~Cs~~G~C~~-----g~C~C~~Gy~G~~Cec~~~~~~~~~~~~~C~~~~~~~~Cs~~G~C~~---G--~C~C~~~~~  502 (687)
T 3k6s_B          433 DRSLCHGKGFLEC-----GICRCDTGYIGKNCECQTQGRSSQELEGSCRKDNNSIICSGLGDCVC---G--QCLCHTSDV  502 (687)
T ss_dssp             CSSTGGGSEEESS-----SSEEECSSEESTTSCEESSSCCCSGGGSTTSSSTTSCGGGSSEEEET---T--EEEECCCCS
T ss_pred             CCCCCCCCCEEeC-----CEeEcCCCCcCCcccccCCcCCccccCCCCCCCCCCCcCCCCCEEeC---C--EEEcCCCCC
Confidence            4567999999972     3899999999999996554         57654    4999999973   2  79999    


Q ss_pred             --CCCcCCCCCcCCCcCCC---CCCCC--CcEEEeCCCCeEEecCCCCCCCCccc--CCCcCCCC-CCCCCCCCceeecC
Q psy15407        425 --PGYTGDRCEINIDDCLS---HKCEN--NATCVDLIQAYECRCAPGFQGEFCQT--KTPFCAGE-YNPCRNGARCLDHF  494 (604)
Q Consensus       425 --~g~~g~~C~~~~~~C~~---~~C~~--~~~C~~~~~~~~C~C~~g~~g~~C~~--~~~~C~~~-~~~C~~~~~C~~~~  494 (604)
                        +||.|..|+.+...|..   .+|.+  +|+|+.    ..|.|.+||+|..|+.  ..+.|... ...|.++|.|+.  
T Consensus       503 ~~~G~~G~~Ce~~~~~C~~~~~~~C~~~~~G~C~~----g~C~C~~G~~G~~Cec~~~~~~C~~~~g~~Cs~~G~C~~--  576 (687)
T 3k6s_B          503 PGKLIYGQYCECDTINCERYNGQVCGGPGRGLCFC----GKCRCHPGFEGSACQCERTTEGCLNPRRVECSGRGRCRC--  576 (687)
T ss_dssp             TTCCEESTTSCEESSCSCEETTEETSHHHHEEEET----TEEEECTTCCSTTSCSCCSSCTTBCTTCSBTSSSCCBCS--
T ss_pred             CCCCccccccccccccccCCCCcCcCCCCCCeEEC----CEEEcCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcCCC--
Confidence              99999999988888974   46988  899985    3799999999999983  34677642 347999999976  


Q ss_pred             CCeEEecCCCCcCCcCcccCCCCCCCCCCCCCEEeeCCCCeEeee-CCCCccCCCCc
Q psy15407        495 SHYTCECTPGFSGVNCTVNVDDCVNHMCQNGGTCVDGINDYTCKC-EGDFVGKFCEI  550 (604)
Q Consensus       495 ~~~~C~C~~g~~g~~c~~~~~~C~~~~C~~~~~C~~~~~~y~C~C-~~G~~G~~C~~  550 (604)
                        ++|.|.+||+|..|+.. ..|. .+|.+++.|+      .|.| ..|..+..|+.
T Consensus       577 --g~C~C~~Gy~G~~Ce~c-~~C~-~~C~~~g~Cv------~C~~~~~G~~~~~C~~  623 (687)
T 3k6s_B          577 --NVCECHSGYQLPLCQEC-PGCP-SPCGKYISCA------ECLKFEKGPFGKNCSA  623 (687)
T ss_dssp             --SCBCCSTTCCTTTTCCC-TTSC-CCCTTTHHHH------TTTTSCSCCCSSCSSS
T ss_pred             --CEEECCCCCcCCCCCCC-CCCC-cccCCCCCCC------cccCCCCCCCCccccc
Confidence              47999999999999852 3574 5899998887      2444 33555566653

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.56  E-value=2.3e-15  Score=168.96  Aligned_cols=173  Identities=15%  Similarity=0.024  Sum_probs=106.0

Q ss_pred             CCeEEcCCCCCCcCCCCCCcc-------CcEEecCCCcceeecCCCccCCCCCCcEEeCCCCcceecCCCcCCCcccCCc
Q psy15407         96 GTRVDCSQRGLKEIPKDIPLY-------TTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGC  168 (604)
Q Consensus        96 ~~~l~cs~~~L~~iP~~l~~~-------~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~  168 (604)
                      .+.|++.++++..+|..+...       +..+++..|.+..+ + ..|..+++|+.|+|++|+|..|++..| .+.+|+.
T Consensus       175 ~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~~~~-~-~~~~~l~~L~~L~Ls~n~l~~l~~~~~-~l~~L~~  251 (727)
T 4b8c_D          175 TPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIENRMVMP-K-DSKYDDQLWHALDLSNLQIFNISANIF-KYDFLTR  251 (727)
T ss_dssp             -------------------------------------------------CCCCCCEEECTTSCCSCCCGGGG-GCCSCSC
T ss_pred             cceEEeeCCCCCcchhhHhhcCccCcccccCccccccceecC-h-hhhccCCCCcEEECCCCCCCCCChhhc-CCCCCCE
Confidence            367888889988877654221       13334444444433 3 348999999999999999999988877 7899999


Q ss_pred             CCCCCCCCCccccccEEEccCCccccccccccceeeeeeccccCCccccceeecCCCCceeeccCCCCCCCCCCCeEEec
Q psy15407        169 LGDNYCPPKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILS  248 (604)
Q Consensus       169 L~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~i~~l~~~~f~~l~~L~~L~Ls  248 (604)
                      |+|++|.+..++.                            ....+ .+|++|+|++|+|+.|+ ..|..|++|++|+|+
T Consensus       252 L~Ls~N~l~~lp~----------------------------~~~~l-~~L~~L~Ls~N~l~~lp-~~~~~l~~L~~L~L~  301 (727)
T 4b8c_D          252 LYLNGNSLTELPA----------------------------EIKNL-SNLRVLDLSHNRLTSLP-AELGSCFQLKYFYFF  301 (727)
T ss_dssp             CBCTTSCCSCCCG----------------------------GGGGG-TTCCEEECTTSCCSSCC-SSGGGGTTCSEEECC
T ss_pred             EEeeCCcCcccCh----------------------------hhhCC-CCCCEEeCcCCcCCccC-hhhcCCCCCCEEECC
Confidence            9999876432110                            01111 38999999999999884 468899999999999


Q ss_pred             CCcceeeeccccCCCCcccEEEccCCccccCCcccccCccc-ceeeeccCCCccc
Q psy15407        249 YNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHA-ITHLAIGGNPLYC  302 (604)
Q Consensus       249 ~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~-L~~L~L~~Npl~C  302 (604)
                      +|.|+.|+. .|..|++|++|+|++|+|+.+++..|..+.. +..|+|++|.+.-
T Consensus       302 ~N~l~~lp~-~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~  355 (727)
T 4b8c_D          302 DNMVTTLPW-EFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEI  355 (727)
T ss_dssp             SSCCCCCCS-STTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_pred             CCCCCccCh-hhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccC
Confidence            999998855 4999999999999999999877776655432 3347888998863

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.55  E-value=2.9e-15  Score=137.73  Aligned_cols=129  Identities=17%  Similarity=0.142  Sum_probs=110.9

Q ss_pred             CCeEEcCCCCCCcCCCCC--CccCcEEecCCCcceeecCCCccCCCCCCcEEeCCCCcceecCCCcCCCcccCCcCCCCC
Q psy15407         96 GTRVDCSQRGLKEIPKDI--PLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDNY  173 (604)
Q Consensus        96 ~~~l~cs~~~L~~iP~~l--~~~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~l~~  173 (604)
                      -+.|++++|+|+.+|.-.  ...++.|+|++|.|+.+ ..  |..+++|++|+|++|+|+.+++..|..++         
T Consensus        21 L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~-~~--l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~---------   88 (176)
T 1a9n_A           21 DRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL-DG--FPLLRRLKTLLVNNNRICRIGEGLDQALP---------   88 (176)
T ss_dssp             CEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE-CC--CCCCSSCCEEECCSSCCCEECSCHHHHCT---------
T ss_pred             ceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc-cc--cccCCCCCEEECCCCcccccCcchhhcCC---------
Confidence            368999999999997522  34789999999999999 32  99999999999999999999887776654         


Q ss_pred             CCCCccccccEEEccCCccccccccccceeeeeeccccCCccccceeecCCCCceeeccC-CCCCCCCCCCeEEecCCcc
Q psy15407        174 CPPKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSN-FTFSPLSKLSQLILSYNKL  252 (604)
Q Consensus       174 ~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~i~~l~~-~~f~~l~~L~~L~Ls~N~l  252 (604)
                                                                 +|++|+|++|+|+.++. ..|..+++|+.|+|++|.|
T Consensus        89 -------------------------------------------~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i  125 (176)
T 1a9n_A           89 -------------------------------------------DLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPV  125 (176)
T ss_dssp             -------------------------------------------TCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGG
T ss_pred             -------------------------------------------CCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCC
Confidence                                                       78888999999988875 4788999999999999999


Q ss_pred             eeeecc---ccCCCCcccEEEccCCccccC
Q psy15407        253 QCIDRD---ALAGLKSLRIISLHGNDISMI  279 (604)
Q Consensus       253 ~~i~~~---~f~~l~~L~~L~Ls~N~l~~i  279 (604)
                      ..++..   .|..+++|+.|+++.|.+...
T Consensus       126 ~~~~~~~~~~~~~l~~L~~Ld~~~n~~~~~  155 (176)
T 1a9n_A          126 TNKKHYRLYVIYKVPQVRVLDFQKVKLKER  155 (176)
T ss_dssp             GGSTTHHHHHHHHCTTCSEETTEECCHHHH
T ss_pred             CCcHhHHHHHHHHCCccceeCCCcCCHHHH
Confidence            988554   588899999999999998753

>1dx5_I Thrombomodulin; serine proteinase, EGF-like domains, anticoagulant complex, antifibrinolytic complex, hydrolase-hydrolase inhibitor COM; HET: AR7 NDG; 2.30A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 3gis_X 1dqb_A* 1zaq_A 1adx_A 2adx_A

Probab=99.55  E-value=9.4e-16  Score=130.22  Aligned_cols=102  Identities=30%  Similarity=0.728  Sum_probs=82.0

Q ss_pred             CCCcCCCCCCCCCcEEEeC-CCCeEEecCCCCCCCCcccCCCcCCC--CCCCCCCCCceeecCCCeEEecCCCCc---CC
Q psy15407        435 NIDDCLSHKCENNATCVDL-IQAYECRCAPGFQGEFCQTKTPFCAG--EYNPCRNGARCLDHFSHYTCECTPGFS---GV  508 (604)
Q Consensus       435 ~~~~C~~~~C~~~~~C~~~-~~~~~C~C~~g~~g~~C~~~~~~C~~--~~~~C~~~~~C~~~~~~~~C~C~~g~~---g~  508 (604)
                      ++++|...||.+  +|+++ .++|+|.|++||+|..+  ++++|..  ..++|.  +.|++ .++|+|.|++||+   |.
T Consensus         3 dideC~~~pC~~--~C~~~~~g~y~C~C~~Gy~g~~~--~~~~C~~~C~~~~C~--~~C~~-~~~y~C~C~~Gy~~~~g~   75 (118)
T 1dx5_I            3 PVDPCFRANCEY--QCQPLDQTSYLCVCAEGFAPIPH--EPHRCQMFCNQTACP--ADCDP-NTQASCECPEGYILDDGF   75 (118)
T ss_dssp             CCCGGGGCCCSS--EEEECSSSCEEEECCTTEEEETT--EEEEEEECCCSSEEE--CEECT-TSTTCEECCTTEEEETTT
T ss_pred             ccccCCCCCCCC--CCCCCCCCCEEeECCCCccccCC--CCCccccccCCCCCC--CcccC-CCCeEeECCCCccCCCCC
Confidence            678888888874  89998 88999999999988754  2333432  123454  67887 5889999999999   88


Q ss_pred             cCcccCCCCCC-CCCCCCCEEeeCCCCeEeeeCCCCccC
Q psy15407        509 NCTVNVDDCVN-HMCQNGGTCVDGINDYTCKCEGDFVGK  546 (604)
Q Consensus       509 ~c~~~~~~C~~-~~C~~~~~C~~~~~~y~C~C~~G~~G~  546 (604)
                      .| .++++|.. ++|  +++|+++.++|+|.|++||+|.
T Consensus        76 ~C-~dideC~~~~~C--~~~C~n~~g~y~C~C~~G~~g~  111 (118)
T 1dx5_I           76 IC-TDIDECENGGFC--SGVCHNLPGTFECICGPDSALA  111 (118)
T ss_dssp             EE-EECCHHHHCSSC--SSEEEECSSSEEEEECSSSSCE
T ss_pred             cc-ccccccCCCCCC--cCeEEeCCCCEEEECCCCCccC
Confidence            89 48999987 899  6899999999999999999865

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.54  E-value=2.3e-14  Score=152.50  Aligned_cols=138  Identities=26%  Similarity=0.232  Sum_probs=118.8

Q ss_pred             ccCcEEecCCCcceeecCCCccCCCCCCcEEeCCCCcceecCCCcCCCcccCCcCCCCCCCCCccccccEEEccCCcccc
Q psy15407        115 LYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDNYCPPKCTCTVRVLFYDGRAGEC  194 (604)
Q Consensus       115 ~~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~l~~~~~~~~~~l~~l~~~~~~~~~  194 (604)
                      ..+++|+|++|.|+.+.+. .|..+++|++|+|++|+|+.+.+.+|.++++|+.|+|++|.+..+.              
T Consensus       275 ~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~--------------  339 (455)
T 3v47_A          275 SGVKTCDLSKSKIFALLKS-VFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSID--------------  339 (455)
T ss_dssp             SCCCEEECCSSCCCEECTT-TTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEEC--------------
T ss_pred             cCceEEEecCccccccchh-hcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcC--------------
Confidence            4679999999999998764 4999999999999999999999999999999999999987542110              


Q ss_pred             ccccccceeeeeeccccCCccccceeecCCCCceeeccCCCCCCCCCCCeEEecCCcceeeeccccCCCCcccEEEccCC
Q psy15407        195 YIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGN  274 (604)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~i~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N  274 (604)
                                   ....... .+|++|+|++|+|+.+.+..|..+++|++|+|++|+|+.+++..|..+++|+.|+|++|
T Consensus       340 -------------~~~~~~l-~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N  405 (455)
T 3v47_A          340 -------------SRMFENL-DKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN  405 (455)
T ss_dssp             -------------GGGGTTC-TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred             -------------hhHhcCc-ccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCC
Confidence                         0001112 38999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccCCc
Q psy15407        275 DISMIPE  281 (604)
Q Consensus       275 ~l~~i~~  281 (604)
                      +|+.-.+
T Consensus       406 ~l~~~~~  412 (455)
T 3v47_A          406 PWDCSCP  412 (455)
T ss_dssp             CBCCCTT
T ss_pred             CcccCCC
Confidence            9986544

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.51  E-value=2.2e-15  Score=155.40  Aligned_cols=205  Identities=21%  Similarity=0.236  Sum_probs=107.8

Q ss_pred             CeEEcCCCCCCcCCC--------CCCccCcEEecCCCcceeecCCCccCCC-----CCCcEEeCCCCcceecCCCcCC--
Q psy15407         97 TRVDCSQRGLKEIPK--------DIPLYTTELILNDNEIGKIKSDGLFGRL-----PNLIKLDLRRNQVTGIEDNAFE--  161 (604)
Q Consensus        97 ~~l~cs~~~L~~iP~--------~l~~~~~~L~L~~N~i~~i~~~~~f~~l-----~~L~~L~Ls~N~i~~i~~~~f~--  161 (604)
                      +.|++++|.|+.++.        .++..+++|+|++|.|+.+... .|..+     ++|++|+|++|+|+...+..|.  
T Consensus        25 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~-~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~  103 (362)
T 3goz_A           25 TSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSD-ELVQILAAIPANVTSLNLSGNFLSYKSSDELVKT  103 (362)
T ss_dssp             CEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHH-HHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHH
T ss_pred             eEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHH-HHHHHHhccCCCccEEECcCCcCChHHHHHHHHH
Confidence            566666666666553        1223566666666666554332 13332     6666666666666655544322  


Q ss_pred             --Cc-ccCCcCCCCCCCCCcc-------------ccccEEEccCCccc--------------------cccccccceeee
Q psy15407        162 --GE-NDQGCLGDNYCPPKCT-------------CTVRVLFYDGRAGE--------------------CYIAVELFSSRI  205 (604)
Q Consensus       162 --~l-~~L~~L~l~~~~~~~~-------------~~l~~l~~~~~~~~--------------------~~~~~~~~~~~~  205 (604)
                        .+ .+|+.|+|++|.+...             ..++.+.+..+...                    +.+..+.+....
T Consensus       104 l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~  183 (362)
T 3goz_A          104 LAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKN  183 (362)
T ss_dssp             HHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSC
T ss_pred             HHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhh
Confidence              22 5666666666643221             23444444433222                    111111110000


Q ss_pred             --eeccccCCccccceeecCCCCceee-----ccCCCCCC-CCCCCeEEecCCcceeeec----cccCCCCcccEEEccC
Q psy15407        206 --RVSYYVGNYPVSTMYRDLSNNQIGF-----LSNFTFSP-LSKLSQLILSYNKLQCIDR----DALAGLKSLRIISLHG  273 (604)
Q Consensus       206 --~~~~~~~~~~~~L~~L~Ls~N~i~~-----l~~~~f~~-l~~L~~L~Ls~N~l~~i~~----~~f~~l~~L~~L~Ls~  273 (604)
                        .+.......+.+|++|+|++|.|+.     ++. .|.. .++|++|+|++|+|+.+..    ..+..+++|++|+|++
T Consensus       184 ~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~-~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~  262 (362)
T 3goz_A          184 CAELAKFLASIPASVTSLDLSANLLGLKSYAELAY-IFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDY  262 (362)
T ss_dssp             HHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHH-HHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEH
T ss_pred             HHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHH-HHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEecc
Confidence              0000011111367777777777766     332 2322 3477777777777776544    3356667777777777


Q ss_pred             CccccCCcc-------cccCcccceeeeccCCCcccc
Q psy15407        274 NDISMIPEG-------AFADLHAITHLAIGGNPLYCD  303 (604)
Q Consensus       274 N~l~~i~~~-------~f~~l~~L~~L~L~~Npl~Cd  303 (604)
                      |.|..+.+.       .|..+++|+.|+|++|++.-.
T Consensus       263 n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~  299 (362)
T 3goz_A          263 DIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS  299 (362)
T ss_dssp             HHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred             CCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence            775555432       456677788888888877644

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.51  E-value=1.9e-14  Score=134.24  Aligned_cols=107  Identities=24%  Similarity=0.340  Sum_probs=87.3

Q ss_pred             CCCeEEcCCCCCCcCCCC--C--CccCcEEecCCCcceeecCCCccCCCCCCcEEeCCCCcceecCCCcCCCcccCCcCC
Q psy15407         95 DGTRVDCSQRGLKEIPKD--I--PLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLG  170 (604)
Q Consensus        95 ~~~~l~cs~~~L~~iP~~--l--~~~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~  170 (604)
                      .-+.|++++|.|+.+|..  +  ...+++|+|++|+|+.+.+. .|.++++|++|+|++|+|+.+++.+|.+++      
T Consensus        30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~------  102 (192)
T 1w8a_A           30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPN-AFEGASHIQELQLGENKIKEISNKMFLGLH------  102 (192)
T ss_dssp             TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTT-TTTTCTTCCEEECCSCCCCEECSSSSTTCT------
T ss_pred             CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHh-HcCCcccCCEEECCCCcCCccCHHHhcCCC------
Confidence            357899999999999864  3  46789999999999999764 499999999999999999999888887654      


Q ss_pred             CCCCCCCccccccEEEccCCccccccccccceeeeeeccccCCccccceeecCCCCceeeccCCCCCCCCCCCeEEecCC
Q psy15407        171 DNYCPPKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYN  250 (604)
Q Consensus       171 l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~i~~l~~~~f~~l~~L~~L~Ls~N  250 (604)
                                                                    +|++|+|++|+|+.+.+..|..+++|++|+|++|
T Consensus       103 ----------------------------------------------~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N  136 (192)
T 1w8a_A          103 ----------------------------------------------QLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN  136 (192)
T ss_dssp             ----------------------------------------------TCCEEECCSSCCCEECTTSSTTCTTCCEEECTTC
T ss_pred             ----------------------------------------------CCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCC
Confidence                                                          6667777777777777777777777777777777


Q ss_pred             ccee
Q psy15407        251 KLQC  254 (604)
Q Consensus       251 ~l~~  254 (604)
                      .+..
T Consensus       137 ~l~c  140 (192)
T 1w8a_A          137 PFNC  140 (192)
T ss_dssp             CBCC
T ss_pred             CccC
Confidence            7664

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.51  E-value=2.8e-16  Score=163.59  Aligned_cols=88  Identities=18%  Similarity=0.163  Sum_probs=66.7

Q ss_pred             cceeecCCCCcee----eccCCCCCCCCCCCeEEecCCcceee----ecccc--CCCCcccEEEccCCcccc-----CCc
Q psy15407        217 STMYRDLSNNQIG----FLSNFTFSPLSKLSQLILSYNKLQCI----DRDAL--AGLKSLRIISLHGNDISM-----IPE  281 (604)
Q Consensus       217 ~L~~L~Ls~N~i~----~l~~~~f~~l~~L~~L~Ls~N~l~~i----~~~~f--~~l~~L~~L~Ls~N~l~~-----i~~  281 (604)
                      +|++|+|++|.|+    ...+..|..+++|++|+|++|+|+..    .+.++  ..+++|+.|+|++|.|+.     ++.
T Consensus       217 ~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~  296 (386)
T 2ca6_A          217 ELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKT  296 (386)
T ss_dssp             TCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHH
T ss_pred             CccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHH
Confidence            7888899999884    22233677888899999999988775    23444  337889999999999887     766


Q ss_pred             ccccCcccceeeeccCCCccccc
Q psy15407        282 GAFADLHAITHLAIGGNPLYCDC  304 (604)
Q Consensus       282 ~~f~~l~~L~~L~L~~Npl~CdC  304 (604)
                      ..+..+++|+.|+|++|++.-..
T Consensus       297 ~l~~~l~~L~~L~l~~N~l~~~~  319 (386)
T 2ca6_A          297 VIDEKMPDLLFLELNGNRFSEED  319 (386)
T ss_dssp             HHHHHCTTCCEEECTTSBSCTTS
T ss_pred             HHHhcCCCceEEEccCCcCCcch
Confidence            55567888999999999887554

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.50  E-value=9.5e-15  Score=130.20  Aligned_cols=123  Identities=19%  Similarity=0.083  Sum_probs=105.0

Q ss_pred             CCeEEcCCCCCC--cCCCCC--CccCcEEecCCCcceeecCCCccCCCCCCcEEeCCCCcceecCCCcCCCcccCCcCCC
Q psy15407         96 GTRVDCSQRGLK--EIPKDI--PLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGD  171 (604)
Q Consensus        96 ~~~l~cs~~~L~--~iP~~l--~~~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~l  171 (604)
                      -+.|+++++.++  .+|..+  ...+++|+|++|.|+.+ .  .|..+++|++|+|++|+|+.+.+..|..++       
T Consensus        19 l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~--~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~-------   88 (149)
T 2je0_A           19 VKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-A--NLPKLNKLKKLELSDNRVSGGLEVLAEKCP-------   88 (149)
T ss_dssp             CSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-T--TCCCCTTCCEEECCSSCCCSCTHHHHHHCT-------
T ss_pred             CeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-h--hhhcCCCCCEEECCCCcccchHHHHhhhCC-------
Confidence            478999999999  888765  35789999999999998 3  399999999999999999985555554443       


Q ss_pred             CCCCCCccccccEEEccCCccccccccccceeeeeeccccCCccccceeecCCCCceeecc-CCCCCCCCCCCeEEecCC
Q psy15407        172 NYCPPKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLS-NFTFSPLSKLSQLILSYN  250 (604)
Q Consensus       172 ~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~i~~l~-~~~f~~l~~L~~L~Ls~N  250 (604)
                                                                   +|++|+|++|+|+.++ +..|..+++|++|+|++|
T Consensus        89 ---------------------------------------------~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N  123 (149)
T 2je0_A           89 ---------------------------------------------NLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC  123 (149)
T ss_dssp             ---------------------------------------------TCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTC
T ss_pred             ---------------------------------------------CCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCC
Confidence                                                         7889999999999875 367899999999999999


Q ss_pred             cceeeec---cccCCCCcccEEEccC
Q psy15407        251 KLQCIDR---DALAGLKSLRIISLHG  273 (604)
Q Consensus       251 ~l~~i~~---~~f~~l~~L~~L~Ls~  273 (604)
                      +|+.+++   ..|..+++|+.|++++
T Consensus       124 ~l~~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A          124 EVTNLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             GGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred             cccchHHHHHHHHHHCCCcccccCCC
Confidence            9999977   6789999999999874

>1tpg_A T-plasminogen activator F1-G; plasminogen activation; NMR {Homo sapiens} SCOP: g.3.11.1 g.27.1.1 PDB: 1tpm_A 1tpn_A

Probab=99.49  E-value=2.3e-14  Score=115.20  Aligned_cols=86  Identities=24%  Similarity=0.599  Sum_probs=64.1

Q ss_pred             ceeeeCCCCCcCCCCcccCCCCCCCCCCCCCeeeeCCCCceEeeCCCCCcCCCCC-cCCCcCCCCCCCCCcEEEeCC--C
Q psy15407        379 QYQCRCTPGYHGQHCEFMIDACYGNPCRNSGTCKLLEEGRFNCECAPGYTGDRCE-INIDDCLSHKCENNATCVDLI--Q  455 (604)
Q Consensus       379 ~~~C~C~~g~~G~~c~~~~~~C~~~~C~~~~~C~~~~~~~~~C~C~~g~~g~~C~-~~~~~C~~~~C~~~~~C~~~~--~  455 (604)
                      +|+|.|.+||+|..|+  +++|...||.+.       .+.|.|.|++||+  .|+ .++++|...||.++|+|++..  +
T Consensus         1 sy~C~C~~g~~g~~c~--~~~c~~~pC~n~-------~~~y~C~C~~G~~--~C~~~~~~~C~~~pC~ngg~C~~~~~~~   69 (91)
T 1tpg_A            1 SYQVICRDEKTQMIYQ--QHQSWLRPVLRS-------NRVEYCWCNSGRA--QCHSVPVKSCSEPRCFNGGTCQQALYFS   69 (91)
T ss_dssp             CCCCCCBCSSSCCBCC--SSCEEEEECSSS-------SCEEEEECSSSCC--BCCEECEEECSSCCSCTTCEEEEESSSS
T ss_pred             CeeeECCCCCcCCeEC--CCcccCCccccC-------CCCcEeECCCCCc--ccccCcCCcccCCCCCCCCEeecCCCCC
Confidence            3678888888888774  567766666542       4677888888887  776 567888888888888888766  7


Q ss_pred             CeEEecCCCCCCCCcccCCC
Q psy15407        456 AYECRCAPGFQGEFCQTKTP  475 (604)
Q Consensus       456 ~~~C~C~~g~~g~~C~~~~~  475 (604)
                      +|.|.|++||+|..|+.+++
T Consensus        70 ~~~C~C~~G~~G~~Ce~~id   89 (91)
T 1tpg_A           70 DFVCQCPEGFAGKSCEIDTR   89 (91)
T ss_dssp             CEEEECCTTCBSSSCCBCSS
T ss_pred             CeEeECCCCCcCCcCCcCCC
Confidence            78888888888888876554

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.49  E-value=7.6e-14  Score=130.14  Aligned_cols=106  Identities=26%  Similarity=0.370  Sum_probs=87.7

Q ss_pred             CCeEEcCCCCCCcCCCCC--CccCcEEecCCCcceeecCCCccCCCCCCcEEeCCCCcceecCCCcCCCcccCCcCCCCC
Q psy15407         96 GTRVDCSQRGLKEIPKDI--PLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDNY  173 (604)
Q Consensus        96 ~~~l~cs~~~L~~iP~~l--~~~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~l~~  173 (604)
                      -+.|++++|.|+.||..+  ...+++|+|++|.|+.+++. .|.+|++|++|+|++|+|+.+++.+|.+++         
T Consensus        33 l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~-~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~---------  102 (193)
T 2wfh_A           33 VTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQ-SFSNMTQLLTLILSYNRLRCIPPRTFDGLK---------  102 (193)
T ss_dssp             CCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTT-TTTTCTTCCEEECCSSCCCBCCTTTTTTCT---------
T ss_pred             CCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHh-HccCCCCCCEEECCCCccCEeCHHHhCCCC---------
Confidence            478999999999999766  35789999999999999874 599999999999999999999988887764         


Q ss_pred             CCCCccccccEEEccCCccccccccccceeeeeeccccCCccccceeecCCCCceeeccCCCCCCCCCCCeEEecCCcce
Q psy15407        174 CPPKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQ  253 (604)
Q Consensus       174 ~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~i~~l~~~~f~~l~~L~~L~Ls~N~l~  253 (604)
                                                                 +|++|+|++|+|+.+++..|..+++|+.|+|++|.+.
T Consensus       103 -------------------------------------------~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  139 (193)
T 2wfh_A          103 -------------------------------------------SLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY  139 (193)
T ss_dssp             -------------------------------------------TCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             -------------------------------------------CCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence                                                       6667777777777777777777777777777777665


Q ss_pred             e
Q psy15407        254 C  254 (604)
Q Consensus       254 ~  254 (604)
                      .
T Consensus       140 C  140 (193)
T 2wfh_A          140 C  140 (193)
T ss_dssp             C
T ss_pred             c
Confidence            4

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.48  E-value=1.4e-16  Score=173.46  Aligned_cols=177  Identities=16%  Similarity=0.091  Sum_probs=126.4

Q ss_pred             CccCcEEecCCCcceeecCCCccCCCCCCcEEeCCCCc-------------ceecCCCcCCCcccCCcCC-CCCCCCCcc
Q psy15407        114 PLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQ-------------VTGIEDNAFEGENDQGCLG-DNYCPPKCT  179 (604)
Q Consensus       114 ~~~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~-------------i~~i~~~~f~~l~~L~~L~-l~~~~~~~~  179 (604)
                      ...++.|+|++|+|+.||..  ++.+++|+.|+|++|.             +....+..|..+.+|+.|+ ++.+.+..+
T Consensus       348 ~~~L~~L~Ls~n~L~~Lp~~--i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~L  425 (567)
T 1dce_A          348 DEQLFRCELSVEKSTVLQSE--LESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDL  425 (567)
T ss_dssp             TTTSSSCCCCHHHHHHHHHH--HHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred             CccceeccCChhhHHhhHHH--HHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccchh
Confidence            34567899999999999865  8899999999998775             4445566777777887777 443311111


Q ss_pred             ccccEEEcc---------CCccccccccccceeeeeeccccCCccccceeecCCCCceeeccCCCCCCCCCCCeEEecCC
Q psy15407        180 CTVRVLFYD---------GRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYN  250 (604)
Q Consensus       180 ~~l~~l~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~i~~l~~~~f~~l~~L~~L~Ls~N  250 (604)
                      .   .+.+.         ..+..+.+..+.+....   . .+.+ .+|+.|+|++|+|+.++. .|..+++|+.|+|++|
T Consensus       426 ~---~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp---~-~~~l-~~L~~L~Ls~N~l~~lp~-~~~~l~~L~~L~Ls~N  496 (567)
T 1dce_A          426 R---SKFLLENSVLKMEYADVRVLHLAHKDLTVLC---H-LEQL-LLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDN  496 (567)
T ss_dssp             H---HHHHHHHHHHHHHHTTCSEEECTTSCCSSCC---C-GGGG-TTCCEEECCSSCCCCCCG-GGGGCTTCCEEECCSS
T ss_pred             h---hhhhhcccccccCccCceEEEecCCCCCCCc---C-cccc-ccCcEeecCcccccccch-hhhcCCCCCEEECCCC
Confidence            1   00000         01112222222222211   1 1222 389999999999998865 7899999999999999


Q ss_pred             cceeeeccccCCCCcccEEEccCCccccCC-cccccCcccceeeeccCCCcccc
Q psy15407        251 KLQCIDRDALAGLKSLRIISLHGNDISMIP-EGAFADLHAITHLAIGGNPLYCD  303 (604)
Q Consensus       251 ~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~-~~~f~~l~~L~~L~L~~Npl~Cd  303 (604)
                      +|+.|+  .|..+++|+.|+|++|+|+.++ +..|..+++|+.|+|++|++.-.
T Consensus       497 ~l~~lp--~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~  548 (567)
T 1dce_A          497 ALENVD--GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE  548 (567)
T ss_dssp             CCCCCG--GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGS
T ss_pred             CCCCCc--ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCC
Confidence            999985  7899999999999999999996 66789999999999999998643

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.48  E-value=5.5e-16  Score=159.91  Aligned_cols=195  Identities=18%  Similarity=0.148  Sum_probs=120.3

Q ss_pred             EEcCCCCCCc-CCCC--CCccCcEEecCCCcceeecCC---CccCCCC-CCcEEeCCCCcceecCCCcCCCc-----ccC
Q psy15407         99 VDCSQRGLKE-IPKD--IPLYTTELILNDNEIGKIKSD---GLFGRLP-NLIKLDLRRNQVTGIEDNAFEGE-----NDQ  166 (604)
Q Consensus        99 l~cs~~~L~~-iP~~--l~~~~~~L~L~~N~i~~i~~~---~~f~~l~-~L~~L~Ls~N~i~~i~~~~f~~l-----~~L  166 (604)
                      ++++.++++. +|..  .+..+++|+|++|.|+.++..   ..|..++ +|++|+|++|+|+.+.+..|..+     .+|
T Consensus         3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L   82 (362)
T 3goz_A            3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV   82 (362)
T ss_dssp             EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred             cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence            5678888884 4432  366799999999999988641   2378898 99999999999999888777776     899


Q ss_pred             CcCCCCCCCCCcc-------------ccccEEEccCCccccccccccceeeeeeccccCCccccceeecCCCCceeeccC
Q psy15407        167 GCLGDNYCPPKCT-------------CTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSN  233 (604)
Q Consensus       167 ~~L~l~~~~~~~~-------------~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~i~~l~~  233 (604)
                      +.|+|++|.+...             ..++.+.+..+........       .+.......+.+|++|+|++|+|+....
T Consensus        83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~-------~l~~~l~~~~~~L~~L~Ls~N~l~~~~~  155 (362)
T 3goz_A           83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSS-------EFKQAFSNLPASITSLNLRGNDLGIKSS  155 (362)
T ss_dssp             CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHH-------HHHHHHTTSCTTCCEEECTTSCGGGSCH
T ss_pred             cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHH-------HHHHHHHhCCCceeEEEccCCcCCHHHH
Confidence            9999999975421             3455555544432111100       0000011112366777777777663222


Q ss_pred             C----CCCCCC-CCCeEEecCCcceeeecccc----CCC-CcccEEEccCCcccc-----CCcccccC-cccceeeeccC
Q psy15407        234 F----TFSPLS-KLSQLILSYNKLQCIDRDAL----AGL-KSLRIISLHGNDISM-----IPEGAFAD-LHAITHLAIGG  297 (604)
Q Consensus       234 ~----~f~~l~-~L~~L~Ls~N~l~~i~~~~f----~~l-~~L~~L~Ls~N~l~~-----i~~~~f~~-l~~L~~L~L~~  297 (604)
                      .    .+..++ +|++|+|++|+|+...+..|    ..+ ++|++|+|++|.|+.     ++.. |.. .++|++|+|++
T Consensus       156 ~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~-l~~~~~~L~~L~Ls~  234 (362)
T 3goz_A          156 DELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYI-FSSIPNHVVSLNLCL  234 (362)
T ss_dssp             HHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHH-HHHSCTTCCEEECCS
T ss_pred             HHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHH-HhcCCCCceEEECcC
Confidence            1    223333 67777777777766554332    333 467777777777765     3322 222 34677777777


Q ss_pred             CCcc
Q psy15407        298 NPLY  301 (604)
Q Consensus       298 Npl~  301 (604)
                      |++.
T Consensus       235 N~l~  238 (362)
T 3goz_A          235 NCLH  238 (362)
T ss_dssp             SCCC
T ss_pred             CCCC
Confidence            7654

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.47  E-value=5.9e-15  Score=165.56  Aligned_cols=159  Identities=16%  Similarity=0.047  Sum_probs=106.0

Q ss_pred             cCCCCCCcCCCCC--CccCcEEecCCCcceeecCCCccCCCCCCcEEeCCCCcceecCCCcCCCcccCCcCCCCCCCCCc
Q psy15407        101 CSQRGLKEIPKDI--PLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDNYCPPKC  178 (604)
Q Consensus       101 cs~~~L~~iP~~l--~~~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~l~~~~~~~  178 (604)
                      .+.+.+...|..+  ...++.|+|++|.|..|+..  +..|++|++|+|++|+|+.|+ ..|..|.+|+.|+|++|.+..
T Consensus       208 ~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~--~~~l~~L~~L~Ls~N~l~~lp-~~~~~l~~L~~L~Ls~N~l~~  284 (727)
T 4b8c_D          208 DIENRMVMPKDSKYDDQLWHALDLSNLQIFNISAN--IFKYDFLTRLYLNGNSLTELP-AEIKNLSNLRVLDLSHNRLTS  284 (727)
T ss_dssp             --------------CCCCCCEEECTTSCCSCCCGG--GGGCCSCSCCBCTTSCCSCCC-GGGGGGTTCCEEECTTSCCSS
T ss_pred             ccccceecChhhhccCCCCcEEECCCCCCCCCChh--hcCCCCCCEEEeeCCcCcccC-hhhhCCCCCCEEeCcCCcCCc
Confidence            3334444334433  35678999999999988764  458999999999999999775 568889999999888876432


Q ss_pred             cccccEEEccCCccccccccccceeeeeeccccCCccccceeecCCCCceeeccCCCCCCCCCCCeEEecCCcceeeecc
Q psy15407        179 TCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRD  258 (604)
Q Consensus       179 ~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~i~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~~  258 (604)
                      ++.                            ..+.+ .+|++|+|++|.|+.|+.. |..|++|++|+|++|+|+.+.+.
T Consensus       285 lp~----------------------------~~~~l-~~L~~L~L~~N~l~~lp~~-~~~l~~L~~L~L~~N~l~~~~p~  334 (727)
T 4b8c_D          285 LPA----------------------------ELGSC-FQLKYFYFFDNMVTTLPWE-FGNLCNLQFLGVEGNPLEKQFLK  334 (727)
T ss_dssp             CCS----------------------------SGGGG-TTCSEEECCSSCCCCCCSS-TTSCTTCCCEECTTSCCCSHHHH
T ss_pred             cCh----------------------------hhcCC-CCCCEEECCCCCCCccChh-hhcCCCccEEeCCCCccCCCChH
Confidence            111                            00111 3899999999999999775 99999999999999999998888


Q ss_pred             ccCCCCc-ccEEEccCCccccCCcccccCcccceeeeccCC
Q psy15407        259 ALAGLKS-LRIISLHGNDISMIPEGAFADLHAITHLAIGGN  298 (604)
Q Consensus       259 ~f~~l~~-L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N  298 (604)
                      .|..+.. +..|+|++|.++...+.      .|..|+|+.|
T Consensus       335 ~~~~~~~~~~~l~l~~N~l~~~~p~------~l~~l~l~~n  369 (727)
T 4b8c_D          335 ILTEKSVTGLIFYLRDNRPEIPLPH------ERRFIEINTD  369 (727)
T ss_dssp             HHHHHHHHHHHHHHHHCCCCCCCCC------C---------
T ss_pred             HHhhcchhhhHHhhccCcccCcCcc------ccceeEeecc
Confidence            7765432 34578999999865543      3555666666

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.47  E-value=3.8e-14  Score=154.24  Aligned_cols=122  Identities=16%  Similarity=0.134  Sum_probs=99.4

Q ss_pred             CCcEEeCCCCcceecCCCcCCCcccCCcCCCCCCCCCccccccEEEccCCccccccccccceeeeeeccccCCcccccee
Q psy15407        141 NLIKLDLRRNQVTGIEDNAFEGENDQGCLGDNYCPPKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMY  220 (604)
Q Consensus       141 ~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~  220 (604)
                      .|+.|+|++|+|+.|+.  |..+.+|+.|+|++|.+..++.                            ..+.+ .+|+.
T Consensus       442 ~L~~L~Ls~n~l~~lp~--~~~l~~L~~L~Ls~N~l~~lp~----------------------------~~~~l-~~L~~  490 (567)
T 1dce_A          442 DVRVLHLAHKDLTVLCH--LEQLLLVTHLDLSHNRLRALPP----------------------------ALAAL-RCLEV  490 (567)
T ss_dssp             TCSEEECTTSCCSSCCC--GGGGTTCCEEECCSSCCCCCCG----------------------------GGGGC-TTCCE
T ss_pred             CceEEEecCCCCCCCcC--ccccccCcEeecCcccccccch----------------------------hhhcC-CCCCE
Confidence            48889999999998864  8888888888888776432110                            01111 38999


Q ss_pred             ecCCCCceeeccCCCCCCCCCCCeEEecCCcceeee-ccccCCCCcccEEEccCCccccCCccc---ccCcccceeeec
Q psy15407        221 RDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCID-RDALAGLKSLRIISLHGNDISMIPEGA---FADLHAITHLAI  295 (604)
Q Consensus       221 L~Ls~N~i~~l~~~~f~~l~~L~~L~Ls~N~l~~i~-~~~f~~l~~L~~L~Ls~N~l~~i~~~~---f~~l~~L~~L~L  295 (604)
                      |+|++|+|+.++  .|..+++|+.|+|++|+|+.+. |..|..+++|+.|+|++|+|+.+++..   +..+++|+.|+|
T Consensus       491 L~Ls~N~l~~lp--~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          491 LQASDNALENVD--GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             EECCSSCCCCCG--GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred             EECCCCCCCCCc--ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence            999999999987  7999999999999999999997 889999999999999999999998743   344788888864

>4aqs_A Laminin subunit beta-1; cell adhesion; HET: NAG BMA MAN FUL; 3.11A {Mus musculus}

Probab=99.47  E-value=1.4e-14  Score=156.22  Aligned_cols=212  Identities=21%  Similarity=0.431  Sum_probs=86.4

Q ss_pred             CceeeeCCCCCcCCCCcccCCCCCCCCCCCCCeeeeCCCCceEeeCCCCCcCCCCCcCCCcCCCCCCCCCcEEEeCCC--
Q psy15407        378 RQYQCRCTPGYHGQHCEFMIDACYGNPCRNSGTCKLLEEGRFNCECAPGYTGDRCEINIDDCLSHKCENNATCVDLIQ--  455 (604)
Q Consensus       378 ~~~~C~C~~g~~G~~c~~~~~~C~~~~C~~~~~C~~~~~~~~~C~C~~g~~g~~C~~~~~~C~~~~C~~~~~C~~~~~--  455 (604)
                      ..+.|.|+.||+|..|+..++.+...|+.. ++|.. ....+.|.|..  .+..|+.+...+...++.+++.|.+-..  
T Consensus       277 ~~g~C~C~~G~~G~~Ce~C~~g~~~~p~~~-~~c~~-~~~~~~C~C~~--~~~~C~~d~~~c~~~~~~~gg~C~~C~~g~  352 (525)
T 4aqs_A          277 VHGHCMCRHNTKGLNCELCMDFYHDLPWRP-AEGRN-SNACKKCNCNE--HSSSCHFDMAVFLATGNVSGGVCDNCQHNT  352 (525)
T ss_dssp             CCCEECCCTTEESSSSCEECTTCCSSCCCC-CBTTB-CCCCCCCCCTT--SCSEEEECHHHHHHTTSSCCEEEESCCTTE
T ss_pred             cCccccCcCCCcCCCCcCCCCccCCCccCC-CcccC-CCcccccccCC--CCCCCCCCcccccccCccCCCcccCCCCCC
Confidence            357999999999999998888888777643 23322 12233344432  2334443333333333334444421111  


Q ss_pred             -------------------------CeEEecCCCCC--CCCcccCCCcCCCCCCCCCCCCceeecCCCeEE-ecCCCCcC
Q psy15407        456 -------------------------AYECRCAPGFQ--GEFCQTKTPFCAGEYNPCRNGARCLDHFSHYTC-ECTPGFSG  507 (604)
Q Consensus       456 -------------------------~~~C~C~~g~~--g~~C~~~~~~C~~~~~~C~~~~~C~~~~~~~~C-~C~~g~~g  507 (604)
                                               ...|.|...+.  +..|........   ..+.....|.....+++| .|.+||.|
T Consensus       353 ~G~~Ce~C~~g~~~~~~~~~~~~~~~~~C~C~~~~~~~~~~C~~~~~~~~---~~~~~~C~C~~g~~G~~C~~C~~Gy~G  429 (525)
T 4aqs_A          353 MGRNCEQCKPFYFQHPERDIRDPNLCEPCTCDPAGSENGGICDGYTDFSV---GLIAGQCRCKLHVEGERCDVCKEGFYD  429 (525)
T ss_dssp             ESTTSCEECTTEEECSSSCTTCTTCEEECCCCTTTBSGGGCCCCSCBGGG---TBCSSCCCBCTTEETTTTCEECTTEEC
T ss_pred             CCCCcccccCcccccCCCCCCCCCCCcCCCCCCCCCCCCccccCCCCCCc---CCCCCccCCCCCCCCCcccCCCCCCcC
Confidence                                     11223322221  111211100000   001111133333344556 58888887


Q ss_pred             CcCcccCCCCCCCCCCCCCEEeeC----CCCeEeeeCCCCccCCCCcCcccccCC-CCCCCCCCCCCCCCc-eeCCCCCC
Q psy15407        508 VNCTVNVDDCVNHMCQNGGTCVDG----INDYTCKCEGDFVGKFCEIAPFVAMMY-PQTSPCQHHDCKNGI-CFQPQGSN  581 (604)
Q Consensus       508 ~~c~~~~~~C~~~~C~~~~~C~~~----~~~y~C~C~~G~~G~~C~~~~~~~~~~-~~~~~C~~~~C~~g~-C~~~~g~~  581 (604)
                      ..|. ..+.|...+|..+++|.+.    ..+++|.|++||.|..|+.+..+.... ...+.|....|.+++ |...-...
T Consensus       430 ~~c~-~~~~C~~C~C~~~gtc~~~~~Cd~~tg~C~C~~g~~G~~Ce~C~~G~~g~~~~~~~C~~C~C~~~gs~~~~C~~~  508 (525)
T 4aqs_A          430 LSAE-DPYGCKSCACNPLGTIPGGNPCDSETGYCYCKRLVTGQRCDQCLPQHWGLSNDLDGCRPCDCDLGGALNNSCSED  508 (525)
T ss_dssp             CCTT-STTSSEECCCCTTTBCCSSCCBCTTTCCBCBCTTCCSTTTCC---------------------------------
T ss_pred             CCCC-CCCCCccCCCCCCceecCCCcccCCCCEEECCCCCcCCCcccCCCCccCCCCCCCCCcCCCCCCCCccCCccCCC
Confidence            7775 4556766677776666442    235689999999999998754332211 224568777787765 44332123


Q ss_pred             CeeeecCCCCcCCCCC
Q psy15407        582 DYLCKCAPGYSGKESL  597 (604)
Q Consensus       582 ~~~C~C~~G~~G~~C~  597 (604)
                      +++|.|++||+|++||
T Consensus       509 tG~C~C~~G~~G~~Ce  524 (525)
T 4aqs_A          509 SGQCSCLPHMIGRQCN  524 (525)
T ss_dssp             ----------------
T ss_pred             CCeeECCCCCcCCCCC
Confidence            4579999999999997

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.46  E-value=4.1e-15  Score=151.57  Aligned_cols=76  Identities=13%  Similarity=0.209  Sum_probs=43.0

Q ss_pred             CeEEcCCCCCCcCCCCC--CccCcEEecCCCccee--ecCCCccCCCCCCcEEeCCCCcceecCCCcCCCcccCCcCCCC
Q psy15407         97 TRVDCSQRGLKEIPKDI--PLYTTELILNDNEIGK--IKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDN  172 (604)
Q Consensus        97 ~~l~cs~~~L~~iP~~l--~~~~~~L~L~~N~i~~--i~~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~l~  172 (604)
                      +.++++++.++.++..+  ...+++|+|++|.|+.  ++.  +|..+++|++|+|++|.|+...+..|..+++|+.|+++
T Consensus        73 ~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~--~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~  150 (336)
T 2ast_B           73 IAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHG--ILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLS  150 (336)
T ss_dssp             SEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHH--HHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECT
T ss_pred             eEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHH--HHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECC
Confidence            45566666655544433  2445666666666543  322  25666666666666666655445555556666666666


Q ss_pred             CC
Q psy15407        173 YC  174 (604)
Q Consensus       173 ~~  174 (604)
                      +|
T Consensus       151 ~~  152 (336)
T 2ast_B          151 GC  152 (336)
T ss_dssp             TC
T ss_pred             CC
Confidence            55

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.44  E-value=7.1e-13  Score=134.61  Aligned_cols=183  Identities=15%  Similarity=0.084  Sum_probs=130.8

Q ss_pred             CeEEcCCCCCCcCCCCCC---ccCcEEecCCCcceeecCCCccCCCCCCcEEeCCCCc----ceecCCCcCCCcccCC-c
Q psy15407         97 TRVDCSQRGLKEIPKDIP---LYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQ----VTGIEDNAFEGENDQG-C  168 (604)
Q Consensus        97 ~~l~cs~~~L~~iP~~l~---~~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~----i~~i~~~~f~~l~~L~-~  168 (604)
                      +.|++.+ +++.|+...+   ..+++|+|++|.|..|++ .+|....+|..|.+..+.    +..+...+|.+...|+ .
T Consensus       104 ~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~-~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~  181 (329)
T 3sb4_A          104 EKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLP-EALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETT  181 (329)
T ss_dssp             CC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECT-TSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEE
T ss_pred             cEEECCc-cccchhHHHhhcCcccceEEcCCCCccccch-hhhcCCCceEEecCcchhhhhcccccccccccccccccee
Confidence            7889988 8999988754   467999999999999987 458888888888777643    3446666665544444 1


Q ss_pred             CC-------------------------CCCCC----CC----ccccccEEEccCCccccccccccceeeeeeccccCCcc
Q psy15407        169 LG-------------------------DNYCP----PK----CTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYP  215 (604)
Q Consensus       169 L~-------------------------l~~~~----~~----~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  215 (604)
                      +.                         +...-    +.    ....++.+.+..+.         +.. +....|.+  .
T Consensus       182 i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~---------i~~-I~~~aF~~--~  249 (329)
T 3sb4_A          182 IQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTN---------ATT-IPDFTFAQ--K  249 (329)
T ss_dssp             EEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBC---------CCE-ECTTTTTT--C
T ss_pred             EEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCC---------cce-ecHhhhhC--C
Confidence            11                         11000    00    01233333333221         111 11111111  2


Q ss_pred             ccceeecCCCCceeeccCCCCCCCCCCC-eEEecCCcceeeeccccCCCCcccEEEccCCccccCCcccccCcccceeee
Q psy15407        216 VSTMYRDLSNNQIGFLSNFTFSPLSKLS-QLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLA  294 (604)
Q Consensus       216 ~~L~~L~Ls~N~i~~l~~~~f~~l~~L~-~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~  294 (604)
                      .+|+.|+|++| |+.|+..+|.++.+|+ .|+|.+ +|+.|.+.+|.++++|+.|+|+.|+|+.|+..+|..+++|+.|+
T Consensus       250 ~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly  327 (329)
T 3sb4_A          250 KYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY  327 (329)
T ss_dssp             TTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred             CCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence            38999999998 9999999999999999 999999 89999999999999999999999999999999999999999886


Q ss_pred             c
Q psy15407        295 I  295 (604)
Q Consensus       295 L  295 (604)
                      .
T Consensus       328 ~  328 (329)
T 3sb4_A          328 K  328 (329)
T ss_dssp             C
T ss_pred             c
Confidence            4

>1tpg_A T-plasminogen activator F1-G; plasminogen activation; NMR {Homo sapiens} SCOP: g.3.11.1 g.27.1.1 PDB: 1tpm_A 1tpn_A

Probab=99.43  E-value=1e-13  Score=111.40  Aligned_cols=56  Identities=39%  Similarity=0.900  Sum_probs=31.2

Q ss_pred             cCCCeEEecCCCCcCCcCc-ccCCCCCCCCCCCCCEEeeCC--CCeEeeeCCCCccCCCCc
Q psy15407        493 HFSHYTCECTPGFSGVNCT-VNVDDCVNHMCQNGGTCVDGI--NDYTCKCEGDFVGKFCEI  550 (604)
Q Consensus       493 ~~~~~~C~C~~g~~g~~c~-~~~~~C~~~~C~~~~~C~~~~--~~y~C~C~~G~~G~~C~~  550 (604)
                      ..++|+|.|++||+  .|+ .++++|..+||.++|+|++..  ++|+|.|++||+|.+|+.
T Consensus        28 ~~~~y~C~C~~G~~--~C~~~~~~~C~~~pC~ngg~C~~~~~~~~~~C~C~~G~~G~~Ce~   86 (91)
T 1tpg_A           28 SNRVEYCWCNSGRA--QCHSVPVKSCSEPRCFNGGTCQQALYFSDFVCQCPEGFAGKSCEI   86 (91)
T ss_dssp             SSCEEEEECSSSCC--BCCEECEEECSSCCSCTTCEEEEESSSSCEEEECCTTCBSSSCCB
T ss_pred             CCCCcEeECCCCCc--ccccCcCCcccCCCCCCCCEeecCCCCCCeEeECCCCCcCCcCCc
Confidence            34455555555555  554 455555555555555555544  555555555555555553

>2w86_A Fibrillin-1, fibrillin1; phosphoprotein, EGF-like domain, disease mutation, craniosynostosis, extracellular matrix, fibrillin calcium cbegf hybrid; 1.80A {Homo sapiens}

Probab=99.43  E-value=5.1e-15  Score=131.37  Aligned_cols=131  Identities=27%  Similarity=0.604  Sum_probs=92.4

Q ss_pred             cccCCCCCCCCCCCCCeeeeCCCCceEeeCCCCCcCCCCCcCCCcCCCCCCCCCcEEEeCCCCeEEecCCCCCCCCcccC
Q psy15407        394 EFMIDACYGNPCRNSGTCKLLEEGRFNCECAPGYTGDRCEINIDDCLSHKCENNATCVDLIQAYECRCAPGFQGEFCQTK  473 (604)
Q Consensus       394 ~~~~~~C~~~~C~~~~~C~~~~~~~~~C~C~~g~~g~~C~~~~~~C~~~~C~~~~~C~~~~~~~~C~C~~g~~g~~C~~~  473 (604)
                      +.++|+|..+||.+ ++|++ ..++|.|.|++||+|..+.              .+|++...   ..|..+|.|..|+..
T Consensus         1 ~~dideC~~~pC~n-g~C~n-~~g~y~C~C~~G~~g~~~~--------------~~C~~~~~---~~C~~~~~g~~C~~~   61 (147)
T 2w86_A            1 SADIDECESSPCIN-GVCKN-SPGSFICECSSESTLDPTK--------------TICIETIK---GTCWQTVIDGRCEIN   61 (147)
T ss_dssp             CCCCCGGGGCCSBT-SEEEE-ETTEEEEECCTTEEECTTS--------------SBEEECCC---EEEEEEEETTEEEEE
T ss_pred             CCcCccCcCCCCCC-CEeEC-CCCCEEeECCCCcccCCCC--------------CeecCCCC---CcccCCCCCCccccC
Confidence            35789999999985 79987 4789999999999987653              34544322   356667777777765


Q ss_pred             CCcCCCCC-----CCCCCCCceeecCCCeEEecCCCCc---CCcCcccCCCCCC--CCCCCCCEEeeCCCCeEeeeCCCC
Q psy15407        474 TPFCAGEY-----NPCRNGARCLDHFSHYTCECTPGFS---GVNCTVNVDDCVN--HMCQNGGTCVDGINDYTCKCEGDF  543 (604)
Q Consensus       474 ~~~C~~~~-----~~C~~~~~C~~~~~~~~C~C~~g~~---g~~c~~~~~~C~~--~~C~~~~~C~~~~~~y~C~C~~G~  543 (604)
                      ++.|....     .....++.|..  -.|.|.|++||+   |..|+ ++++|..  ++|.+ ++|+++.++|+|.|++||
T Consensus        62 ~~~c~~~~~C~~~~g~~~g~~C~~--c~~~C~C~~Gy~~~~g~~C~-dideC~~~~~~C~~-g~C~n~~g~y~C~C~~Gy  137 (147)
T 2w86_A           62 INGATLKSQCCSSLGAAWGSPCTL--CQVDPICGKGYSRIKGTQCE-DIDECEVFPGVCKN-GLCVNTRGSFKCQCPSGM  137 (147)
T ss_dssp             EEEEECHHHHHTTTCSEETTTTEE--CCCCTTTCTTEEEEETTEEE-ECCHHHHSTTCSSS-SEEEEETTEEEEECCTTC
T ss_pred             CCccccCCccccCcCcccCCCccc--CCCcccCCCccccCCCCccC-ccccccCCCCCCCC-CEEECCCCCEEeeCCCCC
Confidence            55443110     00001122321  237889999995   89997 8999974  45986 599999999999999999


Q ss_pred             ccCC
Q psy15407        544 VGKF  547 (604)
Q Consensus       544 ~G~~  547 (604)
                      +|..
T Consensus       138 ~g~~  141 (147)
T 2w86_A          138 TLDA  141 (147)
T ss_dssp             CBCT
T ss_pred             ccCC
Confidence            9764

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.43  E-value=3.6e-13  Score=123.67  Aligned_cols=85  Identities=31%  Similarity=0.493  Sum_probs=79.1

Q ss_pred             cceeecCCCCceeeccCCCCCCCCCCCeEEecCCcceeeeccccCCCCcccEEEccCCccccCCcccccCcccceeeecc
Q psy15407        217 STMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIG  296 (604)
Q Consensus       217 ~L~~L~Ls~N~i~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~  296 (604)
                      +|+.|+|++|+|+.+++..|..+++|++|+|++|+|+.+++..|..+++|++|+|++|+|+.+++..|..+++|+.|+|+
T Consensus        29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~  108 (177)
T 2o6r_A           29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALD  108 (177)
T ss_dssp             TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECc
Confidence            67778888888888888888899999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcc
Q psy15407        297 GNPLY  301 (604)
Q Consensus       297 ~Npl~  301 (604)
                      +|.+.
T Consensus       109 ~N~l~  113 (177)
T 2o6r_A          109 TNQLK  113 (177)
T ss_dssp             SSCCS
T ss_pred             CCcce
Confidence            99986

>1dx5_I Thrombomodulin; serine proteinase, EGF-like domains, anticoagulant complex, antifibrinolytic complex, hydrolase-hydrolase inhibitor COM; HET: AR7 NDG; 2.30A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 3gis_X 1dqb_A* 1zaq_A 1adx_A 2adx_A

Probab=99.42  E-value=2.2e-14  Score=121.77  Aligned_cols=102  Identities=22%  Similarity=0.610  Sum_probs=79.7

Q ss_pred             CCCcCCCCCCCCCCCCceeec-CCCeEEecCCCCcCCcCccc--CCCCCCCCCCCCCEEeeCCCCeEeeeCCCCc---cC
Q psy15407        473 KTPFCAGEYNPCRNGARCLDH-FSHYTCECTPGFSGVNCTVN--VDDCVNHMCQNGGTCVDGINDYTCKCEGDFV---GK  546 (604)
Q Consensus       473 ~~~~C~~~~~~C~~~~~C~~~-~~~~~C~C~~g~~g~~c~~~--~~~C~~~~C~~~~~C~~~~~~y~C~C~~G~~---G~  546 (604)
                      ++++|.  .++|.+  +|++. .++|+|.|++||+|..+..+  .++|..++|.  +.|++ .++|+|.|++||+   |.
T Consensus         3 dideC~--~~pC~~--~C~~~~~g~y~C~C~~Gy~g~~~~~~~C~~~C~~~~C~--~~C~~-~~~y~C~C~~Gy~~~~g~   75 (118)
T 1dx5_I            3 PVDPCF--RANCEY--QCQPLDQTSYLCVCAEGFAPIPHEPHRCQMFCNQTACP--ADCDP-NTQASCECPEGYILDDGF   75 (118)
T ss_dssp             CCCGGG--GCCCSS--EEEECSSSCEEEECCTTEEEETTEEEEEEECCCSSEEE--CEECT-TSTTCEECCTTEEEETTT
T ss_pred             ccccCC--CCCCCC--CCCCCCCCCEEeECCCCccccCCCCCccccccCCCCCC--CcccC-CCCeEeECCCCccCCCCC
Confidence            567885  368974  99999 89999999999998854211  1234455665  68988 5899999999999   77


Q ss_pred             CCCcCcccccCCCCCCCCCC-CCCCCCceeCCCCCCCeeeecCCCCcCC
Q psy15407        547 FCEIAPFVAMMYPQTSPCQH-HDCKNGICFQPQGSNDYLCKCAPGYSGK  594 (604)
Q Consensus       547 ~C~~~~~~~~~~~~~~~C~~-~~C~~g~C~~~~g~~~~~C~C~~G~~G~  594 (604)
                      .|+.          +++|.. +.| ++.|+++.  ++|+|.|++||+|.
T Consensus        76 ~C~d----------ideC~~~~~C-~~~C~n~~--g~y~C~C~~G~~g~  111 (118)
T 1dx5_I           76 ICTD----------IDECENGGFC-SGVCHNLP--GTFECICGPDSALA  111 (118)
T ss_dssp             EEEE----------CCHHHHCSSC-SSEEEECS--SSEEEEECSSSSCE
T ss_pred             cccc----------ccccCCCCCC-cCeEEeCC--CCEEEECCCCCccC
Confidence            7853          567765 678 66699998  78999999999875

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.41  E-value=1.2e-15  Score=143.23  Aligned_cols=61  Identities=33%  Similarity=0.276  Sum_probs=31.5

Q ss_pred             cceeecCCCCceeeccCCCCCCCCCCCeEEecCCcceeeec-cccCCCCcccEEEccCCccccC
Q psy15407        217 STMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDR-DALAGLKSLRIISLHGNDISMI  279 (604)
Q Consensus       217 ~L~~L~Ls~N~i~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~-~~f~~l~~L~~L~Ls~N~l~~i  279 (604)
                      +|++|+|++|+|+.++  .|..+++|++|+|++|+|+.++. ..|..+++|++|+|++|.|+..
T Consensus        94 ~L~~L~L~~N~l~~l~--~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~  155 (198)
T 1ds9_A           94 TLEELWISYNQIASLS--GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYND  155 (198)
T ss_dssp             HCSEEEEEEEECCCHH--HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHH
T ss_pred             cCCEEECcCCcCCcCC--ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccc
Confidence            4555555555555544  24445555555555555555433 3445555555555555555433

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.39  E-value=1.2e-14  Score=151.15  Aligned_cols=198  Identities=15%  Similarity=0.018  Sum_probs=132.2

Q ss_pred             CeEEcCCCCCCc-----CCCCC--CccCcEEecCCCcceeecC---CC------ccCCCCCCcEEeCCCCccee----cC
Q psy15407         97 TRVDCSQRGLKE-----IPKDI--PLYTTELILNDNEIGKIKS---DG------LFGRLPNLIKLDLRRNQVTG----IE  156 (604)
Q Consensus        97 ~~l~cs~~~L~~-----iP~~l--~~~~~~L~L~~N~i~~i~~---~~------~f~~l~~L~~L~Ls~N~i~~----i~  156 (604)
                      +.|+++++.|+.     |+..+  ...+++|+|++|.+..+..   .+      .|..+++|++|+|++|.|+.    ..
T Consensus        35 ~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l  114 (386)
T 2ca6_A           35 KEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPL  114 (386)
T ss_dssp             CEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHH
T ss_pred             cEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHH
Confidence            788999988875     22223  3567899999876654421   11      14688999999999999887    23


Q ss_pred             CCcCCCcccCCcCCCCCCCCCcc---------------------ccccEEEccCCccccccccccceeeeeeccccCCcc
Q psy15407        157 DNAFEGENDQGCLGDNYCPPKCT---------------------CTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYP  215 (604)
Q Consensus       157 ~~~f~~l~~L~~L~l~~~~~~~~---------------------~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  215 (604)
                      +..|..+++|+.|+|++|.+...                     ..++.+.+..+...-.       ....+....... 
T Consensus       115 ~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~-------~~~~l~~~l~~~-  186 (386)
T 2ca6_A          115 IDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENG-------SMKEWAKTFQSH-  186 (386)
T ss_dssp             HHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGG-------GHHHHHHHHHHC-
T ss_pred             HHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcH-------HHHHHHHHHHhC-
Confidence            44677788899999998875311                     2344444433321100       000000111111 


Q ss_pred             ccceeecCCCCceee-----ccCCCCCCCCCCCeEEecCCcce----eeeccccCCCCcccEEEccCCccccCC----cc
Q psy15407        216 VSTMYRDLSNNQIGF-----LSNFTFSPLSKLSQLILSYNKLQ----CIDRDALAGLKSLRIISLHGNDISMIP----EG  282 (604)
Q Consensus       216 ~~L~~L~Ls~N~i~~-----l~~~~f~~l~~L~~L~Ls~N~l~----~i~~~~f~~l~~L~~L~Ls~N~l~~i~----~~  282 (604)
                      .+|++|+|++|+|+.     +.+..|..+++|+.|+|++|+|+    ...+..|..+++|+.|+|++|+|+...    +.
T Consensus       187 ~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~  266 (386)
T 2ca6_A          187 RLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVD  266 (386)
T ss_dssp             TTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHH
T ss_pred             CCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHH
Confidence            289999999999983     34447788999999999999994    323557888999999999999998652    22


Q ss_pred             cc--cCcccceeeeccCCCccc
Q psy15407        283 AF--ADLHAITHLAIGGNPLYC  302 (604)
Q Consensus       283 ~f--~~l~~L~~L~L~~Npl~C  302 (604)
                      .+  ..+++|+.|+|++|++.-
T Consensus       267 ~l~~~~~~~L~~L~L~~n~i~~  288 (386)
T 2ca6_A          267 AFSKLENIGLQTLRLQYNEIEL  288 (386)
T ss_dssp             HHHTCSSCCCCEEECCSSCCBH
T ss_pred             HHhhccCCCeEEEECcCCcCCH
Confidence            34  338889999999998764

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.36  E-value=3e-15  Score=140.40  Aligned_cols=122  Identities=26%  Similarity=0.400  Sum_probs=103.5

Q ss_pred             cceeecCCCccCCCCCCcEEeCCCCcceecCCCcCCCcccCCcCCCCCCCCCccccccEEEccCCccccccccccceeee
Q psy15407        126 EIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDNYCPPKCTCTVRVLFYDGRAGECYIAVELFSSRI  205 (604)
Q Consensus       126 ~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~  205 (604)
                      .|+.|+.  .|..+++|++|+|++|+|+.++  .|..++                                         
T Consensus        36 ~l~~l~~--~~~~l~~L~~L~ls~n~l~~l~--~~~~l~-----------------------------------------   70 (198)
T 1ds9_A           36 PIEKMDA--TLSTLKACKHLALSTNNIEKIS--SLSGME-----------------------------------------   70 (198)
T ss_dssp             TCCCCHH--HHHHTTTCSEEECSEEEESCCC--CHHHHT-----------------------------------------
T ss_pred             cHhhhhH--HHhcCCCCCEEECCCCCCcccc--ccccCC-----------------------------------------
Confidence            5556654  3889999999999999999876  555543                                         


Q ss_pred             eeccccCCccccceeecCCCCceeeccCCCCCCCCCCCeEEecCCcceeeeccccCCCCcccEEEccCCccccCCc-ccc
Q psy15407        206 RVSYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPE-GAF  284 (604)
Q Consensus       206 ~~~~~~~~~~~~L~~L~Ls~N~i~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~-~~f  284 (604)
                                 +|++|+|++|+|+.++. .+..+++|++|+|++|+|+.++  .|..+++|++|+|++|+|+.++. ..|
T Consensus        71 -----------~L~~L~l~~n~l~~l~~-~~~~~~~L~~L~L~~N~l~~l~--~~~~l~~L~~L~l~~N~i~~~~~~~~l  136 (198)
T 1ds9_A           71 -----------NLRILSLGRNLIKKIEN-LDAVADTLEELWISYNQIASLS--GIEKLVNLRVLYMSNNKITNWGEIDKL  136 (198)
T ss_dssp             -----------TCCEEEEEEEEECSCSS-HHHHHHHCSEEEEEEEECCCHH--HHHHHHHSSEEEESEEECCCHHHHHHH
T ss_pred             -----------CCCEEECCCCCcccccc-hhhcCCcCCEEECcCCcCCcCC--ccccCCCCCEEECCCCcCCchhHHHHH
Confidence                       78888999999998765 5667789999999999999985  58889999999999999998875 568


Q ss_pred             cCcccceeeeccCCCcccccCC
Q psy15407        285 ADLHAITHLAIGGNPLYCDCGL  306 (604)
Q Consensus       285 ~~l~~L~~L~L~~Npl~CdC~l  306 (604)
                      ..+++|+.|+|++|++.+.+..
T Consensus       137 ~~l~~L~~L~l~~N~l~~~~~~  158 (198)
T 1ds9_A          137 AALDKLEDLLLAGNPLYNDYKE  158 (198)
T ss_dssp             TTTTTCSEEEECSCHHHHHHHT
T ss_pred             hcCCCCCEEEecCCcccccccc
Confidence            8999999999999999988654

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.35  E-value=2.1e-14  Score=146.27  Aligned_cols=189  Identities=13%  Similarity=0.038  Sum_probs=130.8

Q ss_pred             CCeEEcCCCCCCcCCCCC----CccCcEEecCCCcceeecCCCccCCCCCCcEEeCCCCcceec-CCCcCCCcccCCcCC
Q psy15407         96 GTRVDCSQRGLKEIPKDI----PLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGI-EDNAFEGENDQGCLG  170 (604)
Q Consensus        96 ~~~l~cs~~~L~~iP~~l----~~~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i-~~~~f~~l~~L~~L~  170 (604)
                      ++.|+++++.+.  |..+    ...++.|+|++|.|..+.+.  +..+++|++|+|++|.|+.. .+..|..+++|+.|+
T Consensus        49 ~~~l~l~~~~~~--~~~~~~~~~~~l~~L~l~~n~l~~~~~~--~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~  124 (336)
T 2ast_B           49 WQTLDLTGKNLH--PDVTGRLLSQGVIAFRCPRSFMDQPLAE--HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLS  124 (336)
T ss_dssp             SSEEECTTCBCC--HHHHHHHHHTTCSEEECTTCEECSCCCS--CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEE
T ss_pred             heeeccccccCC--HHHHHhhhhccceEEEcCCccccccchh--hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEe
Confidence            678999998877  2222    35789999999999988764  56799999999999998864 556788999999999


Q ss_pred             CCCCCCCc--------cccccEEEccCCccccccccccceeeeeeccccCCccccceeecCCCC-ceeec-cCCCCCCCC
Q psy15407        171 DNYCPPKC--------TCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNN-QIGFL-SNFTFSPLS  240 (604)
Q Consensus       171 l~~~~~~~--------~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N-~i~~l-~~~~f~~l~  240 (604)
                      +++|.+..        ...++.+.+..+.        .+.. ..+....... .+|++|+|++| .|+.. .+..+..++
T Consensus       125 L~~~~l~~~~~~~l~~~~~L~~L~L~~~~--------~l~~-~~l~~~~~~~-~~L~~L~l~~~~~l~~~~~~~~~~~l~  194 (336)
T 2ast_B          125 LEGLRLSDPIVNTLAKNSNLVRLNLSGCS--------GFSE-FALQTLLSSC-SRLDELNLSWCFDFTEKHVQVAVAHVS  194 (336)
T ss_dssp             CTTCBCCHHHHHHHTTCTTCSEEECTTCB--------SCCH-HHHHHHHHHC-TTCCEEECCCCTTCCHHHHHHHHHHSC
T ss_pred             CcCcccCHHHHHHHhcCCCCCEEECCCCC--------CCCH-HHHHHHHhcC-CCCCEEcCCCCCCcChHHHHHHHHhcc
Confidence            99986431        2344455544431        0110 0011111112 27888888888 77753 233566777


Q ss_pred             -CCCeEEecCCc--ce--eeeccccCCCCcccEEEccCCc-cccCCcccccCcccceeeeccCCC
Q psy15407        241 -KLSQLILSYNK--LQ--CIDRDALAGLKSLRIISLHGND-ISMIPEGAFADLHAITHLAIGGNP  299 (604)
Q Consensus       241 -~L~~L~Ls~N~--l~--~i~~~~f~~l~~L~~L~Ls~N~-l~~i~~~~f~~l~~L~~L~L~~Np  299 (604)
                       +|++|+|++|+  ++  .+ +..+..+++|+.|+|++|. |+......|..+++|++|+|++|+
T Consensus       195 ~~L~~L~l~~~~~~~~~~~l-~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~  258 (336)
T 2ast_B          195 ETITQLNLSGYRKNLQKSDL-STLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCY  258 (336)
T ss_dssp             TTCCEEECCSCGGGSCHHHH-HHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCT
T ss_pred             cCCCEEEeCCCcccCCHHHH-HHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCC
Confidence             88888888884  43  33 3456677888888888888 664444467778888888888886

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.32  E-value=1.7e-11  Score=127.48  Aligned_cols=73  Identities=19%  Similarity=0.161  Sum_probs=44.2

Q ss_pred             CCeEEcCCCCCCcCCCCCC--ccCcEEecCCCcceeecCCCccCCCCCCcEEeCCCCcceecCCCcCCCcccCCcCCCC
Q psy15407         96 GTRVDCSQRGLKEIPKDIP--LYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDN  172 (604)
Q Consensus        96 ~~~l~cs~~~L~~iP~~l~--~~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~l~  172 (604)
                      -+.|++.++ |+.|+...+  ..++.|.|.. .|+.|.. .+|.++++|+.|+|++|+|+.|+..+|.. .+|+.|.|.
T Consensus       137 L~~i~l~~~-i~~I~~~aF~~~~L~~i~lp~-~l~~I~~-~aF~~c~~L~~l~l~~n~l~~I~~~aF~~-~~L~~l~lp  211 (401)
T 4fdw_A          137 IAKVVLNEG-LKSIGDMAFFNSTVQEIVFPS-TLEQLKE-DIFYYCYNLKKADLSKTKITKLPASTFVY-AGIEEVLLP  211 (401)
T ss_dssp             CSEEECCTT-CCEECTTTTTTCCCCEEECCT-TCCEECS-STTTTCTTCCEEECTTSCCSEECTTTTTT-CCCSEEECC
T ss_pred             ccEEEeCCC-ccEECHHhcCCCCceEEEeCC-CccEehH-HHhhCcccCCeeecCCCcceEechhhEee-cccCEEEeC
Confidence            456666544 666665432  2456666664 6666655 34677777777777777666666666663 556555554

>2w86_A Fibrillin-1, fibrillin1; phosphoprotein, EGF-like domain, disease mutation, craniosynostosis, extracellular matrix, fibrillin calcium cbegf hybrid; 1.80A {Homo sapiens}

Probab=99.29  E-value=1.4e-13  Score=122.10  Aligned_cols=130  Identities=24%  Similarity=0.553  Sum_probs=94.4

Q ss_pred             ccCCCCcCCCCCCCCeeecCCCCceeeeCCCCCcCCCCcccCCCCCCCCCCCCCeeeeCCCCceEeeCCCCCcCCCCCcC
Q psy15407        356 SKCNACYKSPCTNQGVCEPLPERQYQCRCTPGYHGQHCEFMIDACYGNPCRNSGTCKLLEEGRFNCECAPGYTGDRCEIN  435 (604)
Q Consensus       356 ~~c~~C~~~~C~~~g~C~~~~~~~~~C~C~~g~~G~~c~~~~~~C~~~~C~~~~~C~~~~~~~~~C~C~~g~~g~~C~~~  435 (604)
                      .+.++|..+||.+ |+|++.+ ++|+|.|++||+|..+.              .+|....    ...|..+|.|..|+.+
T Consensus         2 ~dideC~~~pC~n-g~C~n~~-g~y~C~C~~G~~g~~~~--------------~~C~~~~----~~~C~~~~~g~~C~~~   61 (147)
T 2w86_A            2 ADIDECESSPCIN-GVCKNSP-GSFICECSSESTLDPTK--------------TICIETI----KGTCWQTVIDGRCEIN   61 (147)
T ss_dssp             CCCCGGGGCCSBT-SEEEEET-TEEEEECCTTEEECTTS--------------SBEEECC----CEEEEEEEETTEEEEE
T ss_pred             CcCccCcCCCCCC-CEeECCC-CCEEeECCCCcccCCCC--------------CeecCCC----CCcccCCCCCCccccC
Confidence            3568999999985 7999876 78999999999987653              2343321    2356667778888766


Q ss_pred             CCcCCCC-------CCCCCcEEEeCCCCeEEecCCCCC---CCCcccCCCcCCCCCCCCCCCCceeecCCCeEEecCCCC
Q psy15407        436 IDDCLSH-------KCENNATCVDLIQAYECRCAPGFQ---GEFCQTKTPFCAGEYNPCRNGARCLDHFSHYTCECTPGF  505 (604)
Q Consensus       436 ~~~C~~~-------~C~~~~~C~~~~~~~~C~C~~g~~---g~~C~~~~~~C~~~~~~C~~~~~C~~~~~~~~C~C~~g~  505 (604)
                      +++|...       ....++.|..  -.|.|.|++||+   |..|+ ++++|...+++|.+ ++|+++.++|+|.|++||
T Consensus        62 ~~~c~~~~~C~~~~g~~~g~~C~~--c~~~C~C~~Gy~~~~g~~C~-dideC~~~~~~C~~-g~C~n~~g~y~C~C~~Gy  137 (147)
T 2w86_A           62 INGATLKSQCCSSLGAAWGSPCTL--CQVDPICGKGYSRIKGTQCE-DIDECEVFPGVCKN-GLCVNTRGSFKCQCPSGM  137 (147)
T ss_dssp             EEEEECHHHHHTTTCSEETTTTEE--CCCCTTTCTTEEEEETTEEE-ECCHHHHSTTCSSS-SEEEEETTEEEEECCTTC
T ss_pred             CCccccCCccccCcCcccCCCccc--CCCcccCCCccccCCCCccC-ccccccCCCCCCCC-CEEECCCCCEEeeCCCCC
Confidence            6665321       1101111211  137789999995   89997 89999876677986 599999999999999999


Q ss_pred             cCCc
Q psy15407        506 SGVN  509 (604)
Q Consensus       506 ~g~~  509 (604)
                      +|..
T Consensus       138 ~g~~  141 (147)
T 2w86_A          138 TLDA  141 (147)
T ss_dssp             CBCT
T ss_pred             ccCC
Confidence            9764

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.28  E-value=6.5e-14  Score=149.20  Aligned_cols=84  Identities=18%  Similarity=0.150  Sum_probs=62.0

Q ss_pred             cceeecCCCCceeecc----CCCCCCCCCCCeEEecCCcceeee-----ccccCCCCcccEEEccCCcccc-----CCcc
Q psy15407        217 STMYRDLSNNQIGFLS----NFTFSPLSKLSQLILSYNKLQCID-----RDALAGLKSLRIISLHGNDISM-----IPEG  282 (604)
Q Consensus       217 ~L~~L~Ls~N~i~~l~----~~~f~~l~~L~~L~Ls~N~l~~i~-----~~~f~~l~~L~~L~Ls~N~l~~-----i~~~  282 (604)
                      +|++|+|++|.|+...    +..|..+++|++|+|++|+|+...     +..+..+++|++|+|++|.|+.     ++. 
T Consensus       200 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~-  278 (461)
T 1z7x_W          200 QLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCR-  278 (461)
T ss_dssp             CCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHH-
T ss_pred             CceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHH-
Confidence            7888888888887632    335566788888888888877642     3334467888899999888886     333 


Q ss_pred             cccCcccceeeeccCCCcc
Q psy15407        283 AFADLHAITHLAIGGNPLY  301 (604)
Q Consensus       283 ~f~~l~~L~~L~L~~Npl~  301 (604)
                      .+..+++|++|+|++|.+.
T Consensus       279 ~l~~~~~L~~L~Ls~n~i~  297 (461)
T 1z7x_W          279 VLRAKESLKELSLAGNELG  297 (461)
T ss_dssp             HHHHCTTCCEEECTTCCCH
T ss_pred             HHhhCCCcceEECCCCCCc
Confidence            4666788889999988764

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.28  E-value=4.2e-11  Score=124.49  Aligned_cols=187  Identities=12%  Similarity=0.152  Sum_probs=94.0

Q ss_pred             CCCeEEcCCCCCCcCCCCCC---ccCcEEecCCCcceeecCCCccCCCCCCcEEeCCCCcceecCCCcCCCcccCCcCCC
Q psy15407         95 DGTRVDCSQRGLKEIPKDIP---LYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGD  171 (604)
Q Consensus        95 ~~~~l~cs~~~L~~iP~~l~---~~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~l  171 (604)
                      .-+.|.+.+ .|+.|+...+   ..++.|+|..|.|+.|+.. +|. ..+|+.|.|.+ .|+.|...+|.++.+|+.|.+
T Consensus       158 ~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~-aF~-~~~L~~l~lp~-~l~~I~~~aF~~~~~L~~l~l  233 (401)
T 4fdw_A          158 TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPAS-TFV-YAGIEEVLLPV-TLKEIGSQAFLKTSQLKTIEI  233 (401)
T ss_dssp             CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTT-TTT-TCCCSEEECCT-TCCEECTTTTTTCTTCCCEEC
T ss_pred             CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechh-hEe-ecccCEEEeCC-chheehhhHhhCCCCCCEEec
Confidence            345666654 5666665443   3456777777777777653 355 46777777763 377777777777777776666


Q ss_pred             CCCCCCccccccEEEcc----CCccccccccccceeeeeeccccCCccccceeecCCCCcee-----eccCCCCCCCCCC
Q psy15407        172 NYCPPKCTCTVRVLFYD----GRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIG-----FLSNFTFSPLSKL  242 (604)
Q Consensus       172 ~~~~~~~~~~l~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~i~-----~l~~~~f~~l~~L  242 (604)
                      ..+-       ..+...    ..+..+.++.+    ...+.......-.+|+.|+|.+|.+.     .|+..+|.++++|
T Consensus       234 ~~~l-------~~I~~~aF~~~~L~~i~lp~~----i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L  302 (401)
T 4fdw_A          234 PENV-------STIGQEAFRESGITTVKLPNG----VTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKL  302 (401)
T ss_dssp             CTTC-------CEECTTTTTTCCCSEEEEETT----CCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTC
T ss_pred             CCCc-------cCccccccccCCccEEEeCCC----ccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccC
Confidence            5420       000000    00011111000    00000000001124555555554443     4555555555555


Q ss_pred             CeEEecCCcceeeeccccCCCCcccEEEccCCccccCCcccccCcccceeeeccCCC
Q psy15407        243 SQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIGGNP  299 (604)
Q Consensus       243 ~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~Np  299 (604)
                      +.|.|. +.|+.|...+|.++.+|+.|.|..| ++.|...+|... +|+.|.|.+|.
T Consensus       303 ~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~  356 (401)
T 4fdw_A          303 ARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTT  356 (401)
T ss_dssp             CEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSS
T ss_pred             CeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCC
Confidence            555555 3355555555555555555555332 555555555555 55555555553

>1aut_L Activated protein C; serine proteinase, plasma calcium binding, glycoprotein, HYD hydrolase inhibitor complex, blood clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 3f6u_L*

Probab=99.25  E-value=3.9e-12  Score=107.10  Aligned_cols=91  Identities=29%  Similarity=0.752  Sum_probs=63.1

Q ss_pred             CCCcCCCCC--------CCCCcEEEeCCCCeEEecCCCCCCCCcccCC--CcCCCCCCCCCCCCceeecCCCeEEecCCC
Q psy15407        435 NIDDCLSHK--------CENNATCVDLIQAYECRCAPGFQGEFCQTKT--PFCAGEYNPCRNGARCLDHFSHYTCECTPG  504 (604)
Q Consensus       435 ~~~~C~~~~--------C~~~~~C~~~~~~~~C~C~~g~~g~~C~~~~--~~C~~~~~~C~~~~~C~~~~~~~~C~C~~g  504 (604)
                      ++++|...|        |.++++|+++.++|+|.|++||+|..|+..+  ++|......|..  +|+++.++|+|.|++|
T Consensus         5 d~d~C~~~p~~~~C~~~C~~~g~C~~~~~~y~C~C~~G~~G~~C~~~~~~~~C~~~~~~C~~--~C~n~~g~y~C~C~~G   82 (114)
T 1aut_L            5 DGDQCLVLPLEHPCASLCCGHGTCIDGIGSFSCDCRSGWEGRFCQREVSFLNCSLDNGGCTH--YCLEEVGWRRCSCAPG   82 (114)
T ss_dssp             ---CCCCCSSCCSSSSTTTTSEEECCCSSCCCEEECTTEESTTSCEECCSSSSSSGGGGCSS--EEEECSSSEEEECCTT
T ss_pred             ecccccCCCccccccccCCCcCCCCCCCCCcEeeCCCCCcCCCcCcCCcCCcCcCCCCCCCC--EeECCCCCEEeECCCC
Confidence            567777777        8888999998899999999999999987543  357654445553  8999999999999999


Q ss_pred             CcC----CcCcccCCCCCCCCCCCCCEEeeC
Q psy15407        505 FSG----VNCTVNVDDCVNHMCQNGGTCVDG  531 (604)
Q Consensus       505 ~~g----~~c~~~~~~C~~~~C~~~~~C~~~  531 (604)
                      |+|    ..|..    ....||..++.|+..
T Consensus        83 ~~~~~~g~~C~~----~~~~pC~~~~~~i~~  109 (114)
T 1aut_L           83 YKLGDDLLQCHP----AVKFPCGRPWKRMEK  109 (114)
T ss_dssp             EEECTTSSCEEE----CSSSCTTCCC-----
T ss_pred             eeECCCCCccCc----CcccCCCCCCccCCC
Confidence            984    44432    234578887777654

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.25  E-value=7.8e-14  Score=148.60  Aligned_cols=84  Identities=18%  Similarity=0.137  Sum_probs=59.5

Q ss_pred             cceeecCCCCceeecc----CCCCCCCCCCCeEEecCCcceeeeccccCC-----CCcccEEEccCCccc-----cCCcc
Q psy15407        217 STMYRDLSNNQIGFLS----NFTFSPLSKLSQLILSYNKLQCIDRDALAG-----LKSLRIISLHGNDIS-----MIPEG  282 (604)
Q Consensus       217 ~L~~L~Ls~N~i~~l~----~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~-----l~~L~~L~Ls~N~l~-----~i~~~  282 (604)
                      +|++|+|++|.|+...    +..|..+++|++|+|++|+|+...+..+..     .++|++|+|++|+|+     .++. 
T Consensus       314 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~-  392 (461)
T 1z7x_W          314 QLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAA-  392 (461)
T ss_dssp             CCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHH-
T ss_pred             cceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHH-
Confidence            7788888888877542    234556688888888888887654433321     568888888888887     3443 


Q ss_pred             cccCcccceeeeccCCCcc
Q psy15407        283 AFADLHAITHLAIGGNPLY  301 (604)
Q Consensus       283 ~f~~l~~L~~L~L~~Npl~  301 (604)
                      .+..+++|++|+|++|++.
T Consensus       393 ~l~~~~~L~~L~l~~N~i~  411 (461)
T 1z7x_W          393 TLLANHSLRELDLSNNCLG  411 (461)
T ss_dssp             HHHHCCCCCEEECCSSSCC
T ss_pred             HHHhCCCccEEECCCCCCC
Confidence            4666788888888888875

>1emn_A Fibrillin; extracellular matrix, calcium-binding, glycoprotein, repeat, signal, multigene family, disease mutation, matrix protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 1emo_A

Probab=99.23  E-value=5.9e-12  Score=99.04  Aligned_cols=68  Identities=28%  Similarity=0.860  Sum_probs=31.4

Q ss_pred             cCCCCCC-CCCCCCCEEeeCCCCeEeeeCCCCc--cCCCCcCcccccCCCCCCCCC-CCCCCCCceeCCCCCCCeeeecC
Q psy15407        513 NVDDCVN-HMCQNGGTCVDGINDYTCKCEGDFV--GKFCEIAPFVAMMYPQTSPCQ-HHDCKNGICFQPQGSNDYLCKCA  588 (604)
Q Consensus       513 ~~~~C~~-~~C~~~~~C~~~~~~y~C~C~~G~~--G~~C~~~~~~~~~~~~~~~C~-~~~C~~g~C~~~~g~~~~~C~C~  588 (604)
                      ++++|.. ++|.+ ++|++..++|+|.|++||+  |..|+.          +++|. .+.|.++.|+++.  ++|+|.|+
T Consensus         4 dideC~~~~~C~~-g~C~n~~g~y~C~C~~Gy~~~g~~C~d----------ideC~~~~~C~~~~C~n~~--g~y~C~C~   70 (82)
T 1emn_A            4 DMDECKEPDVCKH-GQCINTDGSYRCECPFGYILAGNECVD----------TDECSVGNPCGNGTCKNVI--GGFECTCE   70 (82)
T ss_dssp             CCCSSSSTTSCSS-SEECCCSSCCCEECCTTEEEETTEEEE----------CCGGGTCCTTSSSCEEECS--SSEEECCS
T ss_pred             ccccCCCCCCcCC-CEEEecCCCEEEECCCCeECCCCccCC----------cccccCCCCCCCCEeECCC--CCEEeECC
Confidence            3444442 44543 4555555555555555554  444432          33443 3344444455544  44555555


Q ss_pred             CCCcC
Q psy15407        589 PGYSG  593 (604)
Q Consensus       589 ~G~~G  593 (604)
                      +||.|
T Consensus        71 ~G~~g   75 (82)
T 1emn_A           71 EGFEP   75 (82)
T ss_dssp             SSSCC
T ss_pred             CCeEe
Confidence            55544

>1emn_A Fibrillin; extracellular matrix, calcium-binding, glycoprotein, repeat, signal, multigene family, disease mutation, matrix protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 1emo_A

Probab=99.19  E-value=1.5e-11  Score=96.76  Aligned_cols=70  Identities=31%  Similarity=0.851  Sum_probs=52.6

Q ss_pred             CCCcCCCCCCCCCCCCceeecCCCeEEecCCCCc--CCcCcccCCCCC-CCCCCCCCEEeeCCCCeEeeeCCCCccC
Q psy15407        473 KTPFCAGEYNPCRNGARCLDHFSHYTCECTPGFS--GVNCTVNVDDCV-NHMCQNGGTCVDGINDYTCKCEGDFVGK  546 (604)
Q Consensus       473 ~~~~C~~~~~~C~~~~~C~~~~~~~~C~C~~g~~--g~~c~~~~~~C~-~~~C~~~~~C~~~~~~y~C~C~~G~~G~  546 (604)
                      ++++|.. .++|.+ ++|+++.++|+|.|++||+  |..|. ++++|. .++|.+ ++|++..++|+|.|++||+|.
T Consensus         4 dideC~~-~~~C~~-g~C~n~~g~y~C~C~~Gy~~~g~~C~-dideC~~~~~C~~-~~C~n~~g~y~C~C~~G~~g~   76 (82)
T 1emn_A            4 DMDECKE-PDVCKH-GQCINTDGSYRCECPFGYILAGNECV-DTDECSVGNPCGN-GTCKNVIGGFECTCEEGFEPG   76 (82)
T ss_dssp             CCCSSSS-TTSCSS-SEECCCSSCCCEECCTTEEEETTEEE-ECCGGGTCCTTSS-SCEEECSSSEEECCSSSSCCC
T ss_pred             ccccCCC-CCCcCC-CEEEecCCCEEEECCCCeECCCCccC-CcccccCCCCCCC-CEeECCCCCEEeECCCCeEeC
Confidence            5667764 457764 6788888888888888886  77774 778886 567875 588888888888888888765

>1lmj_A Fibrillin 1; EGF, calcium, microfibril, neonatal, marfan syndrome, connective tissue, extracellular matrix, structural protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1

Probab=99.18  E-value=1.1e-11  Score=98.65  Aligned_cols=71  Identities=24%  Similarity=0.722  Sum_probs=55.5

Q ss_pred             CCCcCCCCCCCCCCCCceeecCCCeEEecCCCCc-----CCcCcccCCCCCCCC--CCCCCEEeeCCCCeEeeeCCCCcc
Q psy15407        473 KTPFCAGEYNPCRNGARCLDHFSHYTCECTPGFS-----GVNCTVNVDDCVNHM--CQNGGTCVDGINDYTCKCEGDFVG  545 (604)
Q Consensus       473 ~~~~C~~~~~~C~~~~~C~~~~~~~~C~C~~g~~-----g~~c~~~~~~C~~~~--C~~~~~C~~~~~~y~C~C~~G~~G  545 (604)
                      ++++|...++.|.+ ++|+++.++|+|.|++||+     |..|. ++++|...+  |. +++|+++.|+|+|.|++||+|
T Consensus         2 dideC~~~~~~C~~-g~C~n~~g~y~C~C~~Gy~~~~~~g~~C~-dideC~~~~~~C~-~~~C~n~~g~y~C~C~~G~~~   78 (86)
T 1lmj_A            2 DIDECRISPDLCGR-GQCVNTPGDFECKCDEGYESGFMMMKNCM-DIDECQRDPLLCR-GGVCHNTEGSYRCECPPGHQL   78 (86)
T ss_dssp             CCCTTTTCSSTTTT-SCEEEETTEEEECCCSSEEECTTTSSSEE-ECCHHHHCSSTTT-TSEEEEETTEEEEESCTTSCC
T ss_pred             ccccccCCCCCCCC-CEEECCCCCEEeeCCCCcCccCCCCCccC-CcccccCCCCcCC-CCEeEcCCCCEEEECcCCccc
Confidence            46777766666864 4888888888888888887     66775 788887655  65 578999999999999999986


Q ss_pred             C
Q psy15407        546 K  546 (604)
Q Consensus       546 ~  546 (604)
                      .
T Consensus        79 ~   79 (86)
T 1lmj_A           79 S   79 (86)
T ss_dssp             C
T ss_pred             C
Confidence            5

>1x7a_L Coagulation factor IX, light chain; inhibition, blood clotting,hydrolase; HET: 187; 2.90A {Sus scrofa} SCOP: g.3.11.1 g.3.11.1 PDB: 1pfx_L*

Probab=99.16  E-value=1.9e-11  Score=107.43  Aligned_cols=74  Identities=38%  Similarity=0.862  Sum_probs=58.4

Q ss_pred             cCCCCCCCCCCCCCEEeeCCCCeEeeeCCCCccCCCCcCcccccCCCCCCCCCC--CCCCCCce-eCCCCCCCeeeecCC
Q psy15407        513 NVDDCVNHMCQNGGTCVDGINDYTCKCEGDFVGKFCEIAPFVAMMYPQTSPCQH--HDCKNGIC-FQPQGSNDYLCKCAP  589 (604)
Q Consensus       513 ~~~~C~~~~C~~~~~C~~~~~~y~C~C~~G~~G~~C~~~~~~~~~~~~~~~C~~--~~C~~g~C-~~~~g~~~~~C~C~~  589 (604)
                      ++++|..+||.++|+|++..++|+|.|++||+|..|+.          .++|..  ..|.+ .| +++.  ++|+|.|++
T Consensus        47 dideC~~~pC~n~g~C~~~~~~y~C~C~~G~~G~~C~~----------~deC~~~~~~C~~-~C~~n~~--g~y~C~C~~  113 (146)
T 1x7a_L           47 DGDQCEPNPCLNGGLCKDDINSYECWCQVGFEGKNCEL----------DATCNIKNGRCKQ-FCKTGAD--SKVLCSCTT  113 (146)
T ss_dssp             ---CCSSCSSCTTCEEEECSSCEEEECCSSEESTTTCE----------ECCTTSGGGSCSS-BCCCCSS--SCCCCBCCT
T ss_pred             CcCcCCCCCCCCCCEeECCCCCEEEecCCCCcCCcCCC----------CccccCCCCCCcC-CCCCCCC--CCEEeEcCC
Confidence            78889888999999999999999999999999999985          356654  34655 68 8888  779999999


Q ss_pred             CCc----CCCCCCC
Q psy15407        590 GYS----GKESLLQ  599 (604)
Q Consensus       590 G~~----G~~C~~~  599 (604)
                      ||+    |..|+..
T Consensus       114 Gy~l~~dG~~C~~~  127 (146)
T 1x7a_L          114 GYRLAPDQKSCKPA  127 (146)
T ss_dssp             TEEECTTSSSEEEC
T ss_pred             CcEeCCCCCcCCCC
Confidence            998    8888643

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.16  E-value=4.2e-11  Score=108.97  Aligned_cols=82  Identities=22%  Similarity=0.335  Sum_probs=76.3

Q ss_pred             cceeecCCCCceeeccCCCCCCCCCCCeEEecCCcceeeeccccCCCCcccEEEccCCccccCCcccccCcccceeeecc
Q psy15407        217 STMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIG  296 (604)
Q Consensus       217 ~L~~L~Ls~N~i~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~  296 (604)
                      +.+.|++++|+|+.++...+   ++|++|+|++|+|+.+++..|..+++|++|+|++|+|+.+++.+|..+++|++|+|+
T Consensus        10 ~~~~l~~s~n~l~~ip~~~~---~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~   86 (170)
T 3g39_A           10 SGTTVDCSGKSLASVPTGIP---TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN   86 (170)
T ss_dssp             ETTEEECTTSCCSSCCSCCC---TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCCEEEeCCCCcCccCccCC---CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence            45678999999999987553   789999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcc
Q psy15407        297 GNPLY  301 (604)
Q Consensus       297 ~Npl~  301 (604)
                      +|.+.
T Consensus        87 ~N~l~   91 (170)
T 3g39_A           87 DNQLK   91 (170)
T ss_dssp             SSCCC
T ss_pred             CCccC
Confidence            99986

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=99.15  E-value=5.1e-11  Score=102.72  Aligned_cols=66  Identities=42%  Similarity=0.818  Sum_probs=58.9

Q ss_pred             CCCCCCeeCCCeEEcCCCCCC--cCCCCCCccCcEEecCCCcceeecCCCccCCCCCCcEEeCCCCcce
Q psy15407         87 ACPSGCSCDGTRVDCSQRGLK--EIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVT  153 (604)
Q Consensus        87 ~CP~~C~C~~~~l~cs~~~L~--~iP~~l~~~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~  153 (604)
                      +||..|.|.+++|+|++++|+  +||..+|..+++|+|++|+|+.|+. ++|..|++|++|+|++|.+.
T Consensus         1 ~CP~~C~C~~~~v~Cs~~~L~~~~vP~~lp~~l~~L~Ls~N~l~~l~~-~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A            1 PCPAPCSCAGTLVDCGRRGLTWASLPTAFPVDTTELVLTGNNLTALPP-GLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             CCCTTCEEETTEEECCSSCCCTTTSCSCCCTTCSEEECTTSCCSSCCT-TTGGGCTTCCEEECCSSCCB
T ss_pred             CcCCCCEEcCCEEEeCCCCCccccCCCCCCcCCCEEECCCCcCCccCh-hhhhhccccCEEEecCCCee
Confidence            499999999999999999999  9999999999999999999999976 45888888888888888653

>1x7a_L Coagulation factor IX, light chain; inhibition, blood clotting,hydrolase; HET: 187; 2.90A {Sus scrofa} SCOP: g.3.11.1 g.3.11.1 PDB: 1pfx_L*

Probab=99.14  E-value=2.9e-11  Score=106.26  Aligned_cols=74  Identities=32%  Similarity=0.776  Sum_probs=60.1

Q ss_pred             CCCcCCCCCCCCCcEEEeCCCCeEEecCCCCCCCCcccCCCcCCCCCCCCCCCCce-eecCCCeEEecCCCCc----CCc
Q psy15407        435 NIDDCLSHKCENNATCVDLIQAYECRCAPGFQGEFCQTKTPFCAGEYNPCRNGARC-LDHFSHYTCECTPGFS----GVN  509 (604)
Q Consensus       435 ~~~~C~~~~C~~~~~C~~~~~~~~C~C~~g~~g~~C~~~~~~C~~~~~~C~~~~~C-~~~~~~~~C~C~~g~~----g~~  509 (604)
                      ++++|...||.++++|++..++|.|.|++||+|..|+. +++|......|.+  +| ++..++|+|.|++||+    |..
T Consensus        47 dideC~~~pC~n~g~C~~~~~~y~C~C~~G~~G~~C~~-~deC~~~~~~C~~--~C~~n~~g~y~C~C~~Gy~l~~dG~~  123 (146)
T 1x7a_L           47 DGDQCEPNPCLNGGLCKDDINSYECWCQVGFEGKNCEL-DATCNIKNGRCKQ--FCKTGADSKVLCSCTTGYRLAPDQKS  123 (146)
T ss_dssp             ---CCSSCSSCTTCEEEECSSCEEEECCSSEESTTTCE-ECCTTSGGGSCSS--BCCCCSSSCCCCBCCTTEEECTTSSS
T ss_pred             CcCcCCCCCCCCCCEeECCCCCEEEecCCCCcCCcCCC-CccccCCCCCCcC--CCCCCCCCCEEeEcCCCcEeCCCCCc
Confidence            78889889999999999999999999999999999974 4788765556765  79 8888999999999998    777


Q ss_pred             Cc
Q psy15407        510 CT  511 (604)
Q Consensus       510 c~  511 (604)
                      |.
T Consensus       124 C~  125 (146)
T 1x7a_L          124 CK  125 (146)
T ss_dssp             EE
T ss_pred             CC
Confidence            76

>1nfu_B Coagulation factor XA, light chain; hydrolase; HET: RRP; 2.05A {Homo sapiens} SCOP: g.3.11.1 PDB: 2h9e_L*

Probab=99.13  E-value=1.2e-11  Score=113.23  Aligned_cols=85  Identities=27%  Similarity=0.720  Sum_probs=32.7

Q ss_pred             CCCcCCCCCCCCCcEEEeCCCCeEEecCCCCCCCCcccCC-CcCCCCCCCCCCCCceeecCCCeEEecCCCCc----CCc
Q psy15407        435 NIDDCLSHKCENNATCVDLIQAYECRCAPGFQGEFCQTKT-PFCAGEYNPCRNGARCLDHFSHYTCECTPGFS----GVN  509 (604)
Q Consensus       435 ~~~~C~~~~C~~~~~C~~~~~~~~C~C~~g~~g~~C~~~~-~~C~~~~~~C~~~~~C~~~~~~~~C~C~~g~~----g~~  509 (604)
                      ++++|...||.++|+|++..++|.|.|++||+|..|+..+ ++|.....+|.+  .|++..++|+|.|++||+    |..
T Consensus        41 dideC~~~pC~ngg~C~n~~g~y~C~C~~Gf~G~~Ce~~i~deC~~~~~~C~~--~C~n~~gsy~C~C~~Gy~l~~dG~~  118 (195)
T 1nfu_B           41 DGDQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQ--FCHEEQNSVVCSCARGYTLADNGKA  118 (195)
T ss_dssp             ----------------------------------------CCGGGTGGGGCSS--EEEEETTEEEEECCTTEEECTTSSC
T ss_pred             CCcccCCCCCCCCCEeECCCCCeeEeCCCCceeccccccccccccCCCCCCCC--EeECCCCCeEEECCCCceeCCCCCc
Confidence            7888888889888899888888999999999998887656 778765566765  898888889999999998    888


Q ss_pred             CcccCCCCCCCCCCCC
Q psy15407        510 CTVNVDDCVNHMCQNG  525 (604)
Q Consensus       510 c~~~~~~C~~~~C~~~  525 (604)
                      |...+    ..||.+.
T Consensus       119 C~~~~----~~PC~~~  130 (195)
T 1nfu_B          119 CIPTG----PYPCGKQ  130 (195)
T ss_dssp             EEESS----SSCTTCC
T ss_pred             cccCC----CCCCCCC
Confidence            86322    3466654

>1z6c_A Vitamin K-dependent protein S; EGF module, blood clotting; NMR {Homo sapiens}

Probab=99.13  E-value=2.7e-11  Score=96.50  Aligned_cols=73  Identities=27%  Similarity=0.671  Sum_probs=60.4

Q ss_pred             CCCcCCCCCCCCCCCCceeecCCCeEEecCCCCc----CCcCcccCCCCCCCCCCCCCEEeeCCCCeEeeeCCCCccCCC
Q psy15407        473 KTPFCAGEYNPCRNGARCLDHFSHYTCECTPGFS----GVNCTVNVDDCVNHMCQNGGTCVDGINDYTCKCEGDFVGKFC  548 (604)
Q Consensus       473 ~~~~C~~~~~~C~~~~~C~~~~~~~~C~C~~g~~----g~~c~~~~~~C~~~~C~~~~~C~~~~~~y~C~C~~G~~G~~C  548 (604)
                      ++++|...+..| ++++|++..++|+|.|++||+    |..|+ ++++|..++|.  ++|+++.|+|+|.|+ ||.|..+
T Consensus         2 dideC~~~~~~C-~~~~C~n~~g~y~C~C~~G~~~~~~g~~C~-dideC~~~~C~--~~C~n~~g~y~C~C~-g~~G~~~   76 (87)
T 1z6c_A            2 DVDECSLKPSIC-GTAVCKNIPGDFECECPEGYRYNLKSKSCE-DIDECSENMCA--QLCVNYPGGYTCYCD-GKKGFKL   76 (87)
T ss_dssp             CSCSSSSSSSSB-TTSSCCCBTTBCCCSSSTTCEEETTTTEEE-CCCHHHHSCCS--SEECCCSSSCCEECC-SSSCCBC
T ss_pred             ccccccCCCCCC-CCCEeECCCCCEEEECCCCceECCCCCcCC-CcCeeCCCCCC--CEEEccCCCEEEECC-CCcCCcc
Confidence            467787665568 678899999999999999998    77885 88999888897  699999999999998 7777766


Q ss_pred             Cc
Q psy15407        549 EI  550 (604)
Q Consensus       549 ~~  550 (604)
                      +.
T Consensus        77 ~~   78 (87)
T 1z6c_A           77 AQ   78 (87)
T ss_dssp             CT
T ss_pred             cC
Confidence            64

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.12  E-value=7.8e-11  Score=107.58  Aligned_cols=81  Identities=20%  Similarity=0.320  Sum_probs=75.3

Q ss_pred             ceeecCCCCceeeccCCCCCCCCCCCeEEecCCcceeeeccccCCCCcccEEEccCCccccCCcccccCcccceeeeccC
Q psy15407        218 TMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIGG  297 (604)
Q Consensus       218 L~~L~Ls~N~i~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~  297 (604)
                      ...+++++|+|+.++...+   ++|++|+|++|+|+.+++..|..+++|++|+|++|+|+.+++.+|..+++|+.|+|++
T Consensus        14 ~~~l~~~~n~l~~iP~~~~---~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~   90 (174)
T 2r9u_A           14 QTLVNCQNIRLASVPAGIP---TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND   90 (174)
T ss_dssp             SSEEECCSSCCSSCCSCCC---TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CcEEEeCCCCCCccCCCcC---CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence            3578999999999987543   7899999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcc
Q psy15407        298 NPLY  301 (604)
Q Consensus       298 Npl~  301 (604)
                      |.+.
T Consensus        91 N~l~   94 (174)
T 2r9u_A           91 NHLK   94 (174)
T ss_dssp             SCCC
T ss_pred             Cccc
Confidence            9887

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.10  E-value=4.4e-11  Score=122.29  Aligned_cols=85  Identities=27%  Similarity=0.293  Sum_probs=68.3

Q ss_pred             cCcEEecCC-CcceeecCCCccCCCCCCcEEeCCCCcceecCCCcCCCcccCCcCCCCCCCCCccccccEEEccCCcccc
Q psy15407        116 YTTELILND-NEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDNYCPPKCTCTVRVLFYDGRAGEC  194 (604)
Q Consensus       116 ~~~~L~L~~-N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~l~~~~~~~~~~l~~l~~~~~~~~~  194 (604)
                      .+++|+|++ |+|+.|++. .|.+|++|++|+|++|+|+.+++.+|.+|+                              
T Consensus        32 ~L~~L~l~~~n~l~~~~~~-~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~------------------------------   80 (347)
T 2ifg_A           32 NLTELYIENQQHLQHLELR-DLRGLGELRNLTIVKSGLRFVAPDAFHFTP------------------------------   80 (347)
T ss_dssp             CCSEEECCSCSSCCEECGG-GSCSCCCCSEEECCSSCCCEECTTGGGSCS------------------------------
T ss_pred             CeeEEEccCCCCCCCcChh-HhccccCCCEEECCCCccceeCHHHhcCCc------------------------------
Confidence            578999996 999999864 499999999999999999999998887764                              


Q ss_pred             ccccccceeeeeeccccCCccccceeecCCCCceeeccCCCCCCCCCCCeEEecCCccee
Q psy15407        195 YIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQC  254 (604)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~i~~l~~~~f~~l~~L~~L~Ls~N~l~~  254 (604)
                                            +|++|+|++|+|+.+++..|..++ |+.|+|++|.|..
T Consensus        81 ----------------------~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c  117 (347)
T 2ifg_A           81 ----------------------RLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLHC  117 (347)
T ss_dssp             ----------------------CCCEEECCSSCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred             ----------------------CCCEEeCCCCccceeCHHHcccCC-ceEEEeeCCCccC
Confidence                                  666777777777777776666655 7777777776654

>1lmj_A Fibrillin 1; EGF, calcium, microfibril, neonatal, marfan syndrome, connective tissue, extracellular matrix, structural protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1

Probab=99.09  E-value=4e-11  Score=95.30  Aligned_cols=72  Identities=31%  Similarity=0.773  Sum_probs=52.8

Q ss_pred             CCCcCCCCC--CCCCcEEEeCCCCeEEecCCCCC-----CCCcccCCCcCCCCCCCCCCCCceeecCCCeEEecCCCCcC
Q psy15407        435 NIDDCLSHK--CENNATCVDLIQAYECRCAPGFQ-----GEFCQTKTPFCAGEYNPCRNGARCLDHFSHYTCECTPGFSG  507 (604)
Q Consensus       435 ~~~~C~~~~--C~~~~~C~~~~~~~~C~C~~g~~-----g~~C~~~~~~C~~~~~~C~~~~~C~~~~~~~~C~C~~g~~g  507 (604)
                      ++++|...+  |.+ ++|+++.++|+|.|++||+     |..|+ ++++|...+..|. +++|+++.++|+|.|++||++
T Consensus         2 dideC~~~~~~C~~-g~C~n~~g~y~C~C~~Gy~~~~~~g~~C~-dideC~~~~~~C~-~~~C~n~~g~y~C~C~~G~~~   78 (86)
T 1lmj_A            2 DIDECRISPDLCGR-GQCVNTPGDFECKCDEGYESGFMMMKNCM-DIDECQRDPLLCR-GGVCHNTEGSYRCECPPGHQL   78 (86)
T ss_dssp             CCCTTTTCSSTTTT-SCEEEETTEEEECCCSSEEECTTTSSSEE-ECCHHHHCSSTTT-TSEEEEETTEEEEESCTTSCC
T ss_pred             ccccccCCCCCCCC-CEEECCCCCEEeeCCCCcCccCCCCCccC-CcccccCCCCcCC-CCEeEcCCCCEEEECcCCccc
Confidence            567777654  754 4888888888888888886     66775 6777876555575 468888888888888888876


Q ss_pred             Cc
Q psy15407        508 VN  509 (604)
Q Consensus       508 ~~  509 (604)
                      ..
T Consensus        79 ~~   80 (86)
T 1lmj_A           79 SP   80 (86)
T ss_dssp             CS
T ss_pred             CC
Confidence            53

>2c4f_L Coagulation factor VII precursor; blood coagulation, serine protease, EGF, EGF-like domain, GLA, receptor enzyme, glycoprotein, hydrolase, protease; HET: CGU GLC FUC NAG GIL; 1.72A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.32.1.1 PDB: 1w2k_L* 1w0y_L* 1z6j_L* 2b8o_L* 2aer_L* 2ec9_L* 2fir_L* 2a2q_L* 1fak_L* 1o5d_L* 1wqv_L* 1wss_L* 1wtg_L* 1wun_L* 1wv7_L* 1dan_L* 2aei_L* 2b7d_L* 2f9b_L* 2flb_L* ...

Probab=99.08  E-value=8.8e-11  Score=102.94  Aligned_cols=75  Identities=39%  Similarity=0.824  Sum_probs=51.6

Q ss_pred             CCCcCCCCCCCCCcEEEeCCCCeEEecCCCCCCCCcccCCCcCCCCCCCCCCCC---ceeecCC-CeEEecCCCCc----
Q psy15407        435 NIDDCLSHKCENNATCVDLIQAYECRCAPGFQGEFCQTKTPFCAGEYNPCRNGA---RCLDHFS-HYTCECTPGFS----  506 (604)
Q Consensus       435 ~~~~C~~~~C~~~~~C~~~~~~~~C~C~~g~~g~~C~~~~~~C~~~~~~C~~~~---~C~~~~~-~~~C~C~~g~~----  506 (604)
                      ++++|...||.++++|+++.++|.|.|++||+|..|+..+++|..  .+|.+++   +|++..+ +|+|.|++||+    
T Consensus        46 did~C~~~pC~n~g~C~~~~g~y~C~C~~G~~G~~C~~~~~~c~~--c~~~~~~C~~~C~~~~g~~y~C~C~~Gy~l~~d  123 (142)
T 2c4f_L           46 DGDQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQLI--CVNENGGCEQYCSDHTGTKRSCRCHEGYSLLAD  123 (142)
T ss_dssp             TCCGGGGCCCCTTCEEEEETTEEEEECCTTEESTTSCEEGGGCCS--TTTGGGGCSSEEECCTTSCCEEECCTTEEECTT
T ss_pred             ccCcCcCCCcCCCCEEeCCCCCEEeeCCCCccCCccccCcccccc--ccCCCCCccCEeECCCCCCEEEECCCCceECCC
Confidence            667777777877778887777788888888888777654444321  1222333   6777777 78888888887    


Q ss_pred             CCcCc
Q psy15407        507 GVNCT  511 (604)
Q Consensus       507 g~~c~  511 (604)
                      |..|.
T Consensus       124 G~~C~  128 (142)
T 2c4f_L          124 GVSCT  128 (142)
T ss_dssp             SSCEE
T ss_pred             CCCCC
Confidence            66775

>2vh0_B Activated factor XA light chain; serine protease, EGF-like domain, blood coagulation, polymorphism, glycoprotein, hydroxylation; HET: GSI; 1.7A {Homo sapiens} PDB: 1ezq_B* 1f0s_B* 1ksn_B* 1f0r_B* 1lpk_A* 1lpz_A* 1lqd_A* 1nfw_B* 1nfx_B* 1nfy_B* 2boh_A* 2cji_B* 1lpg_A* 2j34_B* 2j38_B* 2j2u_B* 2j94_B* 2j95_B* 2uwl_B* 2j4i_B* ...

Probab=99.06  E-value=3.7e-11  Score=104.14  Aligned_cols=75  Identities=29%  Similarity=0.815  Sum_probs=26.2

Q ss_pred             CCCcCCCCCCCCCcEEEeCCCCeEEecCCCCCCCCcccCC-CcCCCCCCCCCCCCceeecCCCeEEecCCCCc----CCc
Q psy15407        435 NIDDCLSHKCENNATCVDLIQAYECRCAPGFQGEFCQTKT-PFCAGEYNPCRNGARCLDHFSHYTCECTPGFS----GVN  509 (604)
Q Consensus       435 ~~~~C~~~~C~~~~~C~~~~~~~~C~C~~g~~g~~C~~~~-~~C~~~~~~C~~~~~C~~~~~~~~C~C~~g~~----g~~  509 (604)
                      ++++|...||.++|+|++..++|.|.|++||+|..|+..+ ++|.....+|.+  +|++..++|+|.|++||+    |..
T Consensus        41 d~d~C~~~pC~n~g~C~~~~~~y~C~C~~G~~G~~C~~~i~d~C~~~~~~C~~--~C~~~~g~y~C~C~~Gy~l~~~g~~  118 (134)
T 2vh0_B           41 DGDQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQ--FCHEEQNSVVCSCARGYTLADNGKA  118 (134)
T ss_dssp             ----------------------------------------CCGGGTGGGGCSS--EEEEETTEEEEECCTTEEECTTSSC
T ss_pred             CcCcCCCCCCCCcCCcccCCCCEEeeCCCCccCCccccCCCCccccCCCCCCC--EeECCCCCEEEECCCCcEECCCCCc
Confidence            6788888888888888888888888888888888887655 677654456764  788888888888888888    777


Q ss_pred             Cc
Q psy15407        510 CT  511 (604)
Q Consensus       510 c~  511 (604)
                      |.
T Consensus       119 C~  120 (134)
T 2vh0_B          119 CI  120 (134)
T ss_dssp             EE
T ss_pred             cC
Confidence            75

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.06  E-value=1.8e-12  Score=133.50  Aligned_cols=40  Identities=18%  Similarity=0.085  Sum_probs=19.4

Q ss_pred             cCcEEecCCCcceeecCCCccCCCCCCcEEeCCCCcceec
Q psy15407        116 YTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGI  155 (604)
Q Consensus       116 ~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i  155 (604)
                      .+++|+|++|.|+......++..+++|++|+|++|.|+..
T Consensus       102 ~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~  141 (372)
T 3un9_A          102 ALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPE  141 (372)
T ss_dssp             CEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHH
T ss_pred             CceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHH
Confidence            4555666666554322112233345555666666655443

>2c4f_L Coagulation factor VII precursor; blood coagulation, serine protease, EGF, EGF-like domain, GLA, receptor enzyme, glycoprotein, hydrolase, protease; HET: CGU GLC FUC NAG GIL; 1.72A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.32.1.1 PDB: 1w2k_L* 1w0y_L* 1z6j_L* 2b8o_L* 2aer_L* 2ec9_L* 2fir_L* 2a2q_L* 1fak_L* 1o5d_L* 1wqv_L* 1wss_L* 1wtg_L* 1wun_L* 1wv7_L* 1dan_L* 2aei_L* 2b7d_L* 2f9b_L* 2flb_L* ...

Probab=99.05  E-value=1.5e-10  Score=101.45  Aligned_cols=76  Identities=36%  Similarity=0.855  Sum_probs=65.4

Q ss_pred             CCCcCCCCCCCCCCCCceeecCCCeEEecCCCCcCCcCcccCCCCCCCCCCCCC---EEeeCCC-CeEeeeCCCCc----
Q psy15407        473 KTPFCAGEYNPCRNGARCLDHFSHYTCECTPGFSGVNCTVNVDDCVNHMCQNGG---TCVDGIN-DYTCKCEGDFV----  544 (604)
Q Consensus       473 ~~~~C~~~~~~C~~~~~C~~~~~~~~C~C~~g~~g~~c~~~~~~C~~~~C~~~~---~C~~~~~-~y~C~C~~G~~----  544 (604)
                      ++++|..  ++|.++++|++..++|+|.|++||+|..|+.++++|...+|.+++   +|++..+ +|+|.|++||+    
T Consensus        46 did~C~~--~pC~n~g~C~~~~g~y~C~C~~G~~G~~C~~~~~~c~~c~~~~~~C~~~C~~~~g~~y~C~C~~Gy~l~~d  123 (142)
T 2c4f_L           46 DGDQCAS--SPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQLICVNENGGCEQYCSDHTGTKRSCRCHEGYSLLAD  123 (142)
T ss_dssp             TCCGGGG--CCCCTTCEEEEETTEEEEECCTTEESTTSCEEGGGCCSTTTGGGGCSSEEECCTTSCCEEECCTTEEECTT
T ss_pred             ccCcCcC--CCcCCCCEEeCCCCCEEeeCCCCccCCccccCccccccccCCCCCccCEeECCCCCCEEEECCCCceECCC
Confidence            6778874  689999999999999999999999999998766776555565555   9999999 99999999999    


Q ss_pred             cCCCCc
Q psy15407        545 GKFCEI  550 (604)
Q Consensus       545 G~~C~~  550 (604)
                      |..|+.
T Consensus       124 G~~C~~  129 (142)
T 2c4f_L          124 GVSCTP  129 (142)
T ss_dssp             SSCEEE
T ss_pred             CCCCCC
Confidence            888875

>2w2n_E LDL receptor, low-density lipoprotein receptor; hydrolase-receptor complex, PCSK9, proprotein converta low-density lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB: 2w2q_E 2w2o_E 2w2p_E 2w2m_E 3gcw_E 3bps_E 3gcx_E 1hz8_A 1i0u_A 1hj7_A

Probab=99.05  E-value=5.1e-11  Score=98.55  Aligned_cols=79  Identities=27%  Similarity=0.578  Sum_probs=33.8

Q ss_pred             cCCCCCCCCcccCCCcCCCCCCCCCCCCceeecCCCeEEecCCCCcC---CcCcccCCCCCC-CCCCCCCEEeeCCCCeE
Q psy15407        461 CAPGFQGEFCQTKTPFCAGEYNPCRNGARCLDHFSHYTCECTPGFSG---VNCTVNVDDCVN-HMCQNGGTCVDGINDYT  536 (604)
Q Consensus       461 C~~g~~g~~C~~~~~~C~~~~~~C~~~~~C~~~~~~~~C~C~~g~~g---~~c~~~~~~C~~-~~C~~~~~C~~~~~~y~  536 (604)
                      ...||.|+.|  ++++|......|.  +.|++..++|+|.|++||+|   ..|+ ++++|.. ++|.  ++|+++.++|+
T Consensus        18 ~~~~~~~~~C--d~neC~~~~~~C~--~~C~n~~g~y~C~C~~Gy~g~~g~~C~-dideC~~~~~C~--~~C~n~~gsy~   90 (107)
T 2w2n_E           18 TENLYFQGAM--GTNECLDNNGGCS--YVCNDLKIGYECLCPDGFQLVAQRRCE-DIDECQDPDTCS--QLCVNLEGGYK   90 (107)
T ss_dssp             --CCCCSCCB--SCCGGGTGGGGCS--SEEECCSBSCEEECCTTCEEETTTEEE-C------------------------
T ss_pred             cCCCcCCCCC--cCccCcCCCCCCC--CEeEeCCCCeEEECCCCccccCCCccc-cccccCCCCCcC--CeeecCCCCEE
Confidence            4567777777  4567765445564  47888888888888888887   6776 7888874 6786  58988888999


Q ss_pred             eeeCCCCccC
Q psy15407        537 CKCEGDFVGK  546 (604)
Q Consensus       537 C~C~~G~~G~  546 (604)
                      |.|++||.|.
T Consensus        91 C~C~~Gy~~~  100 (107)
T 2w2n_E           91 CQCEEGFQLD  100 (107)
T ss_dssp             ----------
T ss_pred             EECCCCceEC
Confidence            9999999865

>1z6c_A Vitamin K-dependent protein S; EGF module, blood clotting; NMR {Homo sapiens}

Probab=99.04  E-value=7.5e-11  Score=93.89  Aligned_cols=76  Identities=36%  Similarity=0.868  Sum_probs=50.4

Q ss_pred             cCCCCCCCC--CCCCCeeeeCCCCceEeeCCCCCc----CCCCCcCCCcCCCCCCCCCcEEEeCCCCeEEecCCCCCCCC
Q psy15407        396 MIDACYGNP--CRNSGTCKLLEEGRFNCECAPGYT----GDRCEINIDDCLSHKCENNATCVDLIQAYECRCAPGFQGEF  469 (604)
Q Consensus       396 ~~~~C~~~~--C~~~~~C~~~~~~~~~C~C~~g~~----g~~C~~~~~~C~~~~C~~~~~C~~~~~~~~C~C~~g~~g~~  469 (604)
                      ++++|..+|  | ++++|.+ ..++|.|.|++||+    |..|+ ++++|...+|.  ++|+++.++|.|.|+ ||.|..
T Consensus         2 dideC~~~~~~C-~~~~C~n-~~g~y~C~C~~G~~~~~~g~~C~-dideC~~~~C~--~~C~n~~g~y~C~C~-g~~G~~   75 (87)
T 1z6c_A            2 DVDECSLKPSIC-GTAVCKN-IPGDFECECPEGYRYNLKSKSCE-DIDECSENMCA--QLCVNYPGGYTCYCD-GKKGFK   75 (87)
T ss_dssp             CSCSSSSSSSSB-TTSSCCC-BTTBCCCSSSTTCEEETTTTEEE-CCCHHHHSCCS--SEECCCSSSCCEECC-SSSCCB
T ss_pred             ccccccCCCCCC-CCCEeEC-CCCCEEEECCCCceECCCCCcCC-CcCeeCCCCCC--CEEEccCCCEEEECC-CCcCCc
Confidence            456676666  6 5667765 35677777777777    56675 67777767775  577777777777776 666665


Q ss_pred             cccCCCcC
Q psy15407        470 CQTKTPFC  477 (604)
Q Consensus       470 C~~~~~~C  477 (604)
                      ++.+...|
T Consensus        76 ~~~~~~~C   83 (87)
T 1z6c_A           76 LAQDQKSC   83 (87)
T ss_dssp             CCTTSSSC
T ss_pred             ccCCCCcc
Confidence            55444433

>1nfu_B Coagulation factor XA, light chain; hydrolase; HET: RRP; 2.05A {Homo sapiens} SCOP: g.3.11.1 PDB: 2h9e_L*

Probab=99.04  E-value=2.1e-11  Score=111.65  Aligned_cols=76  Identities=41%  Similarity=0.945  Sum_probs=26.5

Q ss_pred             cCCCCCCCCCCCCCEEeeCCCCeEeeeCCCCccCCCCcCcccccCCCCCCCCCC--CCCCCCceeCCCCCCCeeeecCCC
Q psy15407        513 NVDDCVNHMCQNGGTCVDGINDYTCKCEGDFVGKFCEIAPFVAMMYPQTSPCQH--HDCKNGICFQPQGSNDYLCKCAPG  590 (604)
Q Consensus       513 ~~~~C~~~~C~~~~~C~~~~~~y~C~C~~G~~G~~C~~~~~~~~~~~~~~~C~~--~~C~~g~C~~~~g~~~~~C~C~~G  590 (604)
                      ++++|..+||.++|+|++..++|+|.|++||+|..|+...        .+.|..  ..|.+ .|++..  ++|+|.|++|
T Consensus        41 dideC~~~pC~ngg~C~n~~g~y~C~C~~Gf~G~~Ce~~i--------~deC~~~~~~C~~-~C~n~~--gsy~C~C~~G  109 (195)
T 1nfu_B           41 DGDQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFT--------RKLCSLDNGDCDQ-FCHEEQ--NSVVCSCARG  109 (195)
T ss_dssp             ------------------------------------------------CCGGGTGGGGCSS-EEEEET--TEEEEECCTT
T ss_pred             CCcccCCCCCCCCCEeECCCCCeeEeCCCCceeccccccc--------cccccCCCCCCCC-EeECCC--CCeEEECCCC
Confidence            7788988899999999999899999999999999988521        145654  34665 788888  7899999999


Q ss_pred             Cc----CCCCCCC
Q psy15407        591 YS----GKESLLQ  599 (604)
Q Consensus       591 ~~----G~~C~~~  599 (604)
                      |+    |..|+..
T Consensus       110 y~l~~dG~~C~~~  122 (195)
T 1nfu_B          110 YTLADNGKACIPT  122 (195)
T ss_dssp             EEECTTSSCEEES
T ss_pred             ceeCCCCCccccC
Confidence            99    8888654

>1aut_L Activated protein C; serine proteinase, plasma calcium binding, glycoprotein, HYD hydrolase inhibitor complex, blood clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 3f6u_L*

Probab=99.02  E-value=2.7e-10  Score=95.76  Aligned_cols=89  Identities=28%  Similarity=0.696  Sum_probs=60.6

Q ss_pred             cCCCCCCCC--------CCCCCeeeeCCCCceEeeCCCCCcCCCCCcCC--CcCCCC--CCCCCcEEEeCCCCeEEecCC
Q psy15407        396 MIDACYGNP--------CRNSGTCKLLEEGRFNCECAPGYTGDRCEINI--DDCLSH--KCENNATCVDLIQAYECRCAP  463 (604)
Q Consensus       396 ~~~~C~~~~--------C~~~~~C~~~~~~~~~C~C~~g~~g~~C~~~~--~~C~~~--~C~~~~~C~~~~~~~~C~C~~  463 (604)
                      ++++|..+|        |.++++|++ ..++|.|.|++||+|..|+..+  ++|...  .|..  +|+++.++|+|.|++
T Consensus         5 d~d~C~~~p~~~~C~~~C~~~g~C~~-~~~~y~C~C~~G~~G~~C~~~~~~~~C~~~~~~C~~--~C~n~~g~y~C~C~~   81 (114)
T 1aut_L            5 DGDQCLVLPLEHPCASLCCGHGTCID-GIGSFSCDCRSGWEGRFCQREVSFLNCSLDNGGCTH--YCLEEVGWRRCSCAP   81 (114)
T ss_dssp             ---CCCCCSSCCSSSSTTTTSEEECC-CSSCCCEEECTTEESTTSCEECCSSSSSSGGGGCSS--EEEECSSSEEEECCT
T ss_pred             ecccccCCCccccccccCCCcCCCCC-CCCCcEeeCCCCCcCCCcCcCCcCCcCcCCCCCCCC--EeECCCCCEEeECCC
Confidence            567777777        888899976 4678999999999999998443  467643  3443  899999999999999


Q ss_pred             CCCC----CCcccCCCcCCCCCCCCCCCCceeec
Q psy15407        464 GFQG----EFCQTKTPFCAGEYNPCRNGARCLDH  493 (604)
Q Consensus       464 g~~g----~~C~~~~~~C~~~~~~C~~~~~C~~~  493 (604)
                      ||+|    ..|+..      ...+|.+.+.|+..
T Consensus        82 G~~~~~~g~~C~~~------~~~pC~~~~~~i~~  109 (114)
T 1aut_L           82 GYKLGDDLLQCHPA------VKFPCGRPWKRMEK  109 (114)
T ss_dssp             TEEECTTSSCEEEC------SSSCTTCCC-----
T ss_pred             CeeECCCCCccCcC------cccCCCCCCccCCC
Confidence            9984    455422      12467777766543

>1klo_A Laminin; glycoprotein; 2.10A {Mus musculus} SCOP: g.3.11.2 g.3.11.2 g.3.11.2 PDB: 1npe_B 1tle_A

Probab=99.01  E-value=1.1e-10  Score=104.58  Aligned_cols=133  Identities=27%  Similarity=0.725  Sum_probs=75.5

Q ss_pred             CCCCCCeeecCCC-Cceee-eCCCCCcCCCCcccCCCCCCCCCCCC---CeeeeCCCCceEeeCCCCCcCCCCCcCCCcC
Q psy15407        365 PCTNQGVCEPLPE-RQYQC-RCTPGYHGQHCEFMIDACYGNPCRNS---GTCKLLEEGRFNCECAPGYTGDRCEINIDDC  439 (604)
Q Consensus       365 ~C~~~g~C~~~~~-~~~~C-~C~~g~~G~~c~~~~~~C~~~~C~~~---~~C~~~~~~~~~C~C~~g~~g~~C~~~~~~C  439 (604)
                      ||.++++|...+. +.++| .|+.+|+|..|+.-.+.-+..|+...   ..|.       .|.|......          
T Consensus         2 ~C~~~g~C~~~~~~g~~~C~~C~~g~~G~~Ce~C~~g~~g~~~~~~~~~~~C~-------~C~C~~~~~~----------   64 (162)
T 1klo_A            2 PCPGGSSCAIVPKTKEVVCTHCPTGTAGKRCELCDDGYFGDPLGSNGPVRLCR-------PCQCNDNIDP----------   64 (162)
T ss_dssp             CSCTTCCEEECSSSCCEEECSCCTTEESTTSCEECTTEEEETTCTTSSCEEEE-------ECCSTTCBCT----------
T ss_pred             cCcCcCcccccCCCCCEEeCCCCCCCcCCCCcCCCCCCcCCcccccCCCCCCe-------eCcCCCCCCc----------
Confidence            6888899987653 56889 79999999988841111111122110   1121       2333322110          


Q ss_pred             CCCCCCCCcEEEeCCCCeEE-ecCCCCCCCCcccCCCcCCCCCCCCCCCCceeecCCCeEEecCCCCcCCcCc-ccCCCC
Q psy15407        440 LSHKCENNATCVDLIQAYEC-RCAPGFQGEFCQTKTPFCAGEYNPCRNGARCLDHFSHYTCECTPGFSGVNCT-VNVDDC  517 (604)
Q Consensus       440 ~~~~C~~~~~C~~~~~~~~C-~C~~g~~g~~C~~~~~~C~~~~~~C~~~~~C~~~~~~~~C~C~~g~~g~~c~-~~~~~C  517 (604)
                           ...+.|...  ...| .|.++|+|..|+                            +|.+||.|..+. ...+.|
T Consensus        65 -----~~~~~C~~~--tG~C~~C~~g~~G~~Ce----------------------------~C~~Gy~g~~~~~~~~~~C  109 (162)
T 1klo_A           65 -----NAVGNCNRL--TGECLKCIYNTAGFYCD----------------------------RCKEGFFGNPLAPNPADKC  109 (162)
T ss_dssp             -----TCSCCBCTT--TCCBCCBCTTEETTTTC----------------------------EECTTEEECTTCSSGGGSE
T ss_pred             -----ccCCcccCC--CCcccCCCCCCcCCCcC----------------------------cCchhhcCCccccCCCCCC
Confidence                 000233211  2357 378888777664                            266677776664 223445


Q ss_pred             CCCCCCCCC------EEeeCCCCeEeeeCCCCccCCCCcC
Q psy15407        518 VNHMCQNGG------TCVDGINDYTCKCEGDFVGKFCEIA  551 (604)
Q Consensus       518 ~~~~C~~~~------~C~~~~~~y~C~C~~G~~G~~C~~~  551 (604)
                      ..-.|.+.|      .|....|  +|.|++||+|.+|+..
T Consensus       110 ~~C~C~~~Gs~~~~~~Cd~~tG--~C~C~~g~~G~~Cd~C  147 (162)
T 1klo_A          110 KACACNPYGTVQQQSSCNPVTG--QCQCLPHVSGRDCGTC  147 (162)
T ss_dssp             EECCCCTTTBGGGCCCCCTTTC--CCCBCTTEESTTCCEE
T ss_pred             eeccCCCCCccCCCCCCCCCCC--EeECCCCCcCCCCCCC
Confidence            555566544      6765444  8999999999999864

>2vh0_B Activated factor XA light chain; serine protease, EGF-like domain, blood coagulation, polymorphism, glycoprotein, hydroxylation; HET: GSI; 1.7A {Homo sapiens} PDB: 1ezq_B* 1f0s_B* 1ksn_B* 1f0r_B* 1lpk_A* 1lpz_A* 1lqd_A* 1nfw_B* 1nfx_B* 1nfy_B* 2boh_A* 2cji_B* 1lpg_A* 2j34_B* 2j38_B* 2j2u_B* 2j94_B* 2j95_B* 2uwl_B* 2j4i_B* ...

Probab=99.00  E-value=4.1e-11  Score=103.90  Aligned_cols=76  Identities=41%  Similarity=0.945  Sum_probs=27.2

Q ss_pred             cCCCCCCCCCCCCCEEeeCCCCeEeeeCCCCccCCCCcCcccccCCCCCCCCCC--CCCCCCceeCCCCCCCeeeecCCC
Q psy15407        513 NVDDCVNHMCQNGGTCVDGINDYTCKCEGDFVGKFCEIAPFVAMMYPQTSPCQH--HDCKNGICFQPQGSNDYLCKCAPG  590 (604)
Q Consensus       513 ~~~~C~~~~C~~~~~C~~~~~~y~C~C~~G~~G~~C~~~~~~~~~~~~~~~C~~--~~C~~g~C~~~~g~~~~~C~C~~G  590 (604)
                      ++++|..+||.++|+|++..++|+|.|++||+|..|+...        .+.|..  ..|.+ .|+++.  ++|+|.|++|
T Consensus        41 d~d~C~~~pC~n~g~C~~~~~~y~C~C~~G~~G~~C~~~i--------~d~C~~~~~~C~~-~C~~~~--g~y~C~C~~G  109 (134)
T 2vh0_B           41 DGDQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFT--------RKLCSLDNGDCDQ-FCHEEQ--NSVVCSCARG  109 (134)
T ss_dssp             ------------------------------------------------CCGGGTGGGGCSS-EEEEET--TEEEEECCTT
T ss_pred             CcCcCCCCCCCCcCCcccCCCCEEeeCCCCccCCccccCC--------CCccccCCCCCCC-EeECCC--CCEEEECCCC
Confidence            7789998999999999999999999999999999998621        145653  34666 799988  7899999999


Q ss_pred             Cc----CCCCCCC
Q psy15407        591 YS----GKESLLQ  599 (604)
Q Consensus       591 ~~----G~~C~~~  599 (604)
                      |+    |..|+..
T Consensus       110 y~l~~~g~~C~~~  122 (134)
T 2vh0_B          110 YTLADNGKACIPT  122 (134)
T ss_dssp             EEECTTSSCEEES
T ss_pred             cEECCCCCccCcC
Confidence            99    9998643

>2p28_B Integrin beta-2; hybrid domain, PSI domain, I-EGF DOM cell adhesion; HET: NAG; 2.20A {Homo sapiens} PDB: 1l3y_A

Probab=98.97  E-value=3.3e-10  Score=105.74  Aligned_cols=61  Identities=26%  Similarity=0.697  Sum_probs=52.1

Q ss_pred             CCCCCCCceeecCCCeEEecCCC------CcCCcCcccCCCCCCC---CCCCC--CEEeeCCCCeEeeeCCCCccCCCCc
Q psy15407        482 NPCRNGARCLDHFSHYTCECTPG------FSGVNCTVNVDDCVNH---MCQNG--GTCVDGINDYTCKCEGDFVGKFCEI  550 (604)
Q Consensus       482 ~~C~~~~~C~~~~~~~~C~C~~g------~~g~~c~~~~~~C~~~---~C~~~--~~C~~~~~~y~C~C~~G~~G~~C~~  550 (604)
                      .+|.++|+|+.    .+|.|.+|      |+|..|+.+.+.|..+   +|..+  |+|+..    +|.|.+||+|..|+.
T Consensus       143 ~~Csg~G~C~~----g~C~C~~gw~~~~~~~G~~Ce~~~~~C~~~~g~~C~~~~~G~C~~g----~C~C~~G~~G~~C~~  214 (217)
T 2p28_B          143 IICSGLGDCVC----GQCLCHTSDVPGKLIYGQYCECDTINCERYNGQVCGGPGRGLCFCG----KCRCHPGFEGSACQH  214 (217)
T ss_dssp             CBGGGTEEEET----TEEEECCCCSTTCCEESTTSCEESSCSCEETTEETTCTTTEEEETT----EEEECTTEESTTSCE
T ss_pred             CCCCCCCEEeC----CceECCCCCCCcccEECCCcccCCccCCCCCCCCCCCCCCcEEeCC----eeECCCCCccCCcCC
Confidence            47888899984    37999999      6999998777889765   79988  999963    899999999999985

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=98.94  E-value=6.9e-09  Score=115.71  Aligned_cols=167  Identities=21%  Similarity=0.618  Sum_probs=114.3

Q ss_pred             CCCCCeeeeCCCCceEe----eCCCCCcCCCCCcCCCcCCCC--CCCCCcEEEeCCCCeEEe----cCCCCCCCCcccCC
Q psy15407        405 CRNSGTCKLLEEGRFNC----ECAPGYTGDRCEINIDDCLSH--KCENNATCVDLIQAYECR----CAPGFQGEFCQTKT  474 (604)
Q Consensus       405 C~~~~~C~~~~~~~~~C----~C~~g~~g~~C~~~~~~C~~~--~C~~~~~C~~~~~~~~C~----C~~g~~g~~C~~~~  474 (604)
                      |.+ +.|+.   ..+.|    .|..|.-...|.  ..+|...  .|. ++.|+.  .++.|.    |..|.-+..|.. .
T Consensus       183 C~~-g~Ci~---~~~~CDg~~dC~dgsDE~~C~--~~~C~~~~f~C~-~g~Ci~--~~~~Cdg~~dC~dgsde~~C~~-~  252 (699)
T 1n7d_A          183 CLS-GECIH---SSWRCDGGPDCKDKSDEENCA--VATCRPDEFQCS-DGNCIH--GSRQCDREYDCKDMSDEVGCVN-V  252 (699)
T ss_dssp             CSS-SCCCS---TTCTTSSSCCSTTSCSSCSCC--CCCCCSSEEESS-SSCEEE--TTCCSSSCCCSSSSCSSSSTTC-C
T ss_pred             cCC-CceEe---chhccCCCCCCCCCcccccCC--CcccCCCcEecC-CCceee--eecccCCCCCCCCCCccCCCCC-C
Confidence            443 36654   25566    677777666775  3455433  465 467887  356775    888887777853 4


Q ss_pred             CcCC-CCCCCCCCCCceeecCC--CeEEecCCCCcCCcCcccCCCCCCC--CCCCCCEEeeCCCCeEeeeCCCCc---cC
Q psy15407        475 PFCA-GEYNPCRNGARCLDHFS--HYTCECTPGFSGVNCTVNVDDCVNH--MCQNGGTCVDGINDYTCKCEGDFV---GK  546 (604)
Q Consensus       475 ~~C~-~~~~~C~~~~~C~~~~~--~~~C~C~~g~~g~~c~~~~~~C~~~--~C~~~~~C~~~~~~y~C~C~~G~~---G~  546 (604)
                      ..|. .....|.+ +.|++...  .+.+.|..|+.+....-++++|...  .|.  +.|+++.++|+|.|++||.   |.
T Consensus       253 ~~C~~~~~~~C~~-g~Ci~~~~~Cd~~~dC~dgsDe~~~~C~~~eC~~~~~~C~--~~C~~~~~~~~C~C~~G~~~~~~~  329 (699)
T 1n7d_A          253 TLCEGPNKFKCHS-GECITLDKVCNMARDCRDWSDEPIKECGTNECLDNNGGCS--HVCNDLKIGYECLCPDGFQLVAQR  329 (699)
T ss_dssp             CCCCSTTCCCCTT-SCCCCSSCCSCSSCCSSSSCSCCCSSCCCCCTTSSTTTSC--TTCCCCTTCCCCCCCSSSCCCSSS
T ss_pred             CcccCCCceecCC-CcEeCCcccccccceecCcccccccccccccccccccCcC--CCcccCCCCcEEeCCCCeEcCCCC
Confidence            4563 33456765 57875432  2457788888765444467888654  364  4799999999999999998   77


Q ss_pred             CCCcCcccccCCCCCCCCC-CCCCCCCceeCCCCCCCeeeecCCCCcC----CCCC
Q psy15407        547 FCEIAPFVAMMYPQTSPCQ-HHDCKNGICFQPQGSNDYLCKCAPGYSG----KESL  597 (604)
Q Consensus       547 ~C~~~~~~~~~~~~~~~C~-~~~C~~g~C~~~~g~~~~~C~C~~G~~G----~~C~  597 (604)
                      .|+.          +++|. ...|.+ .|+++.  ++|+|.|++||.+    +.|.
T Consensus       330 ~C~d----------ideC~~~~~C~~-~C~n~~--g~y~C~C~~G~~~~~~~~~C~  372 (699)
T 1n7d_A          330 RCED----------IDECQDPDTCSQ-LCVNLE--GGYKCQCEEGFQLDPHTKACK  372 (699)
T ss_dssp             CCCC----------CCCCSSSSSCTT-TCCBCS--SCBCCCCCSSCBCCSSCCCCB
T ss_pred             cccC----------ccccCCCCcccc-ccccCC--CCeeeeeecccccCCCCCccc
Confidence            7874          56775 455753 699999  7899999999985    5564

>1klo_A Laminin; glycoprotein; 2.10A {Mus musculus} SCOP: g.3.11.2 g.3.11.2 g.3.11.2 PDB: 1npe_B 1tle_A

Probab=98.93  E-value=3.8e-10  Score=100.99  Aligned_cols=32  Identities=28%  Similarity=0.667  Sum_probs=22.6

Q ss_pred             CCCCCCCCCC-------ceeCCCCCCCeeeecCCCCcCCCCCC
Q psy15407        563 PCQHHDCKNG-------ICFQPQGSNDYLCKCAPGYSGKESLL  598 (604)
Q Consensus       563 ~C~~~~C~~g-------~C~~~~g~~~~~C~C~~G~~G~~C~~  598 (604)
                      .|....|.+.       .|....|    +|.|++||+|++|+.
T Consensus       108 ~C~~C~C~~~Gs~~~~~~Cd~~tG----~C~C~~g~~G~~Cd~  146 (162)
T 1klo_A          108 KCKACACNPYGTVQQQSSCNPVTG----QCQCLPHVSGRDCGT  146 (162)
T ss_dssp             SEEECCCCTTTBGGGCCCCCTTTC----CCCBCTTEESTTCCE
T ss_pred             CCeeccCCCCCccCCCCCCCCCCC----EeECCCCCcCCCCCC
Confidence            4555556542       4765554    599999999999985

>2w2n_E LDL receptor, low-density lipoprotein receptor; hydrolase-receptor complex, PCSK9, proprotein converta low-density lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB: 2w2q_E 2w2o_E 2w2p_E 2w2m_E 3gcw_E 3bps_E 3gcx_E 1hz8_A 1i0u_A 1hj7_A

Probab=98.90  E-value=3e-10  Score=93.92  Aligned_cols=79  Identities=23%  Similarity=0.577  Sum_probs=36.6

Q ss_pred             ecCCCCcCCcCcccCCCCCC--CCCCCCCEEeeCCCCeEeeeCCCCcc---CCCCcCcccccCCCCCCCCCC-CCCCCCc
Q psy15407        500 ECTPGFSGVNCTVNVDDCVN--HMCQNGGTCVDGINDYTCKCEGDFVG---KFCEIAPFVAMMYPQTSPCQH-HDCKNGI  573 (604)
Q Consensus       500 ~C~~g~~g~~c~~~~~~C~~--~~C~~~~~C~~~~~~y~C~C~~G~~G---~~C~~~~~~~~~~~~~~~C~~-~~C~~g~  573 (604)
                      ....||.|..|  ++++|..  ..|.  ++|++..++|+|.|++||+|   ..|+.          +++|.. ..|. +.
T Consensus        17 ~~~~~~~~~~C--d~neC~~~~~~C~--~~C~n~~g~y~C~C~~Gy~g~~g~~C~d----------ideC~~~~~C~-~~   81 (107)
T 2w2n_E           17 TTENLYFQGAM--GTNECLDNNGGCS--YVCNDLKIGYECLCPDGFQLVAQRRCED----------IDECQDPDTCS-QL   81 (107)
T ss_dssp             ---CCCCSCCB--SCCGGGTGGGGCS--SEEECCSBSCEEECCTTCEEETTTEEEC------------------------
T ss_pred             ccCCCcCCCCC--cCccCcCCCCCCC--CEeEeCCCCeEEECCCCccccCCCcccc----------ccccCCCCCcC-Ce
Confidence            35678999999  5788875  3575  59999999999999999998   67763          577763 5676 56


Q ss_pred             eeCCCCCCCeeeecCCCCcCCC
Q psy15407        574 CFQPQGSNDYLCKCAPGYSGKE  595 (604)
Q Consensus       574 C~~~~g~~~~~C~C~~G~~G~~  595 (604)
                      |+++.  ++|+|.|++||.|..
T Consensus        82 C~n~~--gsy~C~C~~Gy~~~~  101 (107)
T 2w2n_E           82 CVNLE--GGYKCQCEEGFQLDP  101 (107)
T ss_dssp             ----------------------
T ss_pred             eecCC--CCEEEECCCCceECC
Confidence            99998  789999999999653

>2p28_B Integrin beta-2; hybrid domain, PSI domain, I-EGF DOM cell adhesion; HET: NAG; 2.20A {Homo sapiens} PDB: 1l3y_A

Probab=98.89  E-value=6.5e-10  Score=103.76  Aligned_cols=62  Identities=34%  Similarity=0.920  Sum_probs=46.3

Q ss_pred             CCCCCCCCEEeeCCCCeEeeeCCC------CccCCCCcCcccccCCCCCCCCCCC---CCCC---CceeCCCCCCCeeee
Q psy15407        519 NHMCQNGGTCVDGINDYTCKCEGD------FVGKFCEIAPFVAMMYPQTSPCQHH---DCKN---GICFQPQGSNDYLCK  586 (604)
Q Consensus       519 ~~~C~~~~~C~~~~~~y~C~C~~G------~~G~~C~~~~~~~~~~~~~~~C~~~---~C~~---g~C~~~~g~~~~~C~  586 (604)
                      ..+|.++|+|+..    +|.|.+|      |+|..|+..         ...|...   .|.+   |.|...      +|.
T Consensus       142 ~~~Csg~G~C~~g----~C~C~~gw~~~~~~~G~~Ce~~---------~~~C~~~~g~~C~~~~~G~C~~g------~C~  202 (217)
T 2p28_B          142 SIICSGLGDCVCG----QCLCHTSDVPGKLIYGQYCECD---------TINCERYNGQVCGGPGRGLCFCG------KCR  202 (217)
T ss_dssp             SCBGGGTEEEETT----EEEECCCCSTTCCEESTTSCEE---------SSCSCEETTEETTCTTTEEEETT------EEE
T ss_pred             CCCCCCCCEEeCC----ceECCCCCCCcccEECCCcccC---------CccCCCCCCCCCCCCCCcEEeCC------eeE
Confidence            3579999999953    8999999      689999853         2344432   3554   458842      699


Q ss_pred             cCCCCcCCCCCCC
Q psy15407        587 CAPGYSGKESLLQ  599 (604)
Q Consensus       587 C~~G~~G~~C~~~  599 (604)
                      |.+||+|..|+..
T Consensus       203 C~~G~~G~~C~~~  215 (217)
T 2p28_B          203 CHPGFEGSACQHH  215 (217)
T ss_dssp             ECTTEESTTSCEE
T ss_pred             CCCCCccCCcCCC
Confidence            9999999999864

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=98.87  E-value=3.5e-09  Score=118.13  Aligned_cols=164  Identities=26%  Similarity=0.648  Sum_probs=118.0

Q ss_pred             CCCCCCeeecCCCCceee----eCCCCCcCCCCcccCCCCCCC--CCCCCCeeeeCCCCceEee----CCCCCcCCCCCc
Q psy15407        365 PCTNQGVCEPLPERQYQC----RCTPGYHGQHCEFMIDACYGN--PCRNSGTCKLLEEGRFNCE----CAPGYTGDRCEI  434 (604)
Q Consensus       365 ~C~~~g~C~~~~~~~~~C----~C~~g~~G~~c~~~~~~C~~~--~C~~~~~C~~~~~~~~~C~----C~~g~~g~~C~~  434 (604)
                      .|.+ |.|+..   .+.|    .|..|..+..|.  ...|...  .|. ++.|+.   +++.|.    |..|.-+..|. 
T Consensus       182 ~C~~-g~Ci~~---~~~CDg~~dC~dgsDE~~C~--~~~C~~~~f~C~-~g~Ci~---~~~~Cdg~~dC~dgsde~~C~-  250 (699)
T 1n7d_A          182 HCLS-GECIHS---SWRCDGGPDCKDKSDEENCA--VATCRPDEFQCS-DGNCIH---GSRQCDREYDCKDMSDEVGCV-  250 (699)
T ss_dssp             CCSS-SCCCST---TCTTSSSCCSTTSCSSCSCC--CCCCCSSEEESS-SSCEEE---TTCCSSSCCCSSSSCSSSSTT-
T ss_pred             ecCC-CceEec---hhccCCCCCCCCCcccccCC--CcccCCCcEecC-CCceee---eecccCCCCCCCCCCccCCCC-
Confidence            4654 477753   4677    788888777775  2345433  465 467875   356775    88888777886 


Q ss_pred             CCCcCC---CCCCCCCcEEEeCCC--CeEEecCCCCCCCCcccCCCcCCCCCCCCCCCCceeecCCCeEEecCCCCc---
Q psy15407        435 NIDDCL---SHKCENNATCVDLIQ--AYECRCAPGFQGEFCQTKTPFCAGEYNPCRNGARCLDHFSHYTCECTPGFS---  506 (604)
Q Consensus       435 ~~~~C~---~~~C~~~~~C~~~~~--~~~C~C~~g~~g~~C~~~~~~C~~~~~~C~~~~~C~~~~~~~~C~C~~g~~---  506 (604)
                      .+..|.   ...|.+ +.|++...  .+.+.|..|+.+..++-++++|......|.  +.|+++.++|+|.|++||.   
T Consensus       251 ~~~~C~~~~~~~C~~-g~Ci~~~~~Cd~~~dC~dgsDe~~~~C~~~eC~~~~~~C~--~~C~~~~~~~~C~C~~G~~~~~  327 (699)
T 1n7d_A          251 NVTLCEGPNKFKCHS-GECITLDKVCNMARDCRDWSDEPIKECGTNECLDNNGGCS--HVCNDLKIGYECLCPDGFQLVA  327 (699)
T ss_dssp             CCCCCCSTTCCCCTT-SCCCCSSCCSCSSCCSSSSCSCCCSSCCCCCTTSSTTTSC--TTCCCCTTCCCCCCCSSSCCCS
T ss_pred             CCCcccCCCceecCC-CcEeCCcccccccceecCcccccccccccccccccccCcC--CCcccCCCCcEEeCCCCeEcCC
Confidence            355663   245755 67865422  345778888776544446778876656675  5799999999999999998   


Q ss_pred             CCcCcccCCCCC-CCCCCCCCEEeeCCCCeEeeeCCCCcc
Q psy15407        507 GVNCTVNVDDCV-NHMCQNGGTCVDGINDYTCKCEGDFVG  545 (604)
Q Consensus       507 g~~c~~~~~~C~-~~~C~~~~~C~~~~~~y~C~C~~G~~G  545 (604)
                      |..|+ ++++|. ..+|.+  .|+++.|+|+|.|++||.+
T Consensus       328 ~~~C~-dideC~~~~~C~~--~C~n~~g~y~C~C~~G~~~  364 (699)
T 1n7d_A          328 QRRCE-DIDECQDPDTCSQ--LCVNLEGGYKCQCEEGFQL  364 (699)
T ss_dssp             SSCCC-CCCCCSSSSSCTT--TCCBCSSCBCCCCCSSCBC
T ss_pred             CCccc-CccccCCCCcccc--ccccCCCCeeeeeeccccc
Confidence            77887 899997 567864  8999999999999999984

>3u7u_G Neuregulin 1; signaling protein, transferase-transferase regulator complex glycosylation; HET: NAG; 3.03A {Homo sapiens}

Probab=98.85  E-value=1.8e-09  Score=76.41  Aligned_cols=45  Identities=31%  Similarity=0.758  Sum_probs=37.5

Q ss_pred             CCcCcccCCCCCCCCCCCCCEE-----eeCCCCeEeeeCCCCccCCCCcC
Q psy15407        507 GVNCTVNVDDCVNHMCQNGGTC-----VDGINDYTCKCEGDFVGKFCEIA  551 (604)
Q Consensus       507 g~~c~~~~~~C~~~~C~~~~~C-----~~~~~~y~C~C~~G~~G~~C~~~  551 (604)
                      |..|.+++++|.++||.++|+|     ++..++|+|.|++||+|.+||..
T Consensus         1 G~~c~~~~~eC~s~pC~NgGtC~~~~~~d~~~~y~C~C~~g~~G~~CE~~   50 (55)
T 3u7u_G            1 GTSHLVKCAEKEKTFCVNGGECFMVKDLSNPSRYLCKCPNEFTGDRCQNY   50 (55)
T ss_dssp             --CCEEECCSTTTTTSCTTCEEEEECCC--CCCEEEEECTTEESTTSCEE
T ss_pred             CCCCcccCCCCcCCCCCCCCCcCCCCccCCCCCEeEeCCCCCcCCCcCcc
Confidence            5678889999999999999999     46778999999999999999864

>4aqs_A Laminin subunit beta-1; cell adhesion; HET: NAG BMA MAN FUL; 3.11A {Mus musculus}

Probab=98.85  E-value=1.2e-09  Score=117.52  Aligned_cols=163  Identities=20%  Similarity=0.378  Sum_probs=62.9

Q ss_pred             eeeeCCCCCcCCCCcccCCCCCCCCCCCCCeeeeCCCCceEeeCCCCCc--CCCCCcCCCcCCCCCCCCCcEEEeCCCCe
Q psy15407        380 YQCRCTPGYHGQHCEFMIDACYGNPCRNSGTCKLLEEGRFNCECAPGYT--GDRCEINIDDCLSHKCENNATCVDLIQAY  457 (604)
Q Consensus       380 ~~C~C~~g~~G~~c~~~~~~C~~~~C~~~~~C~~~~~~~~~C~C~~g~~--g~~C~~~~~~C~~~~C~~~~~C~~~~~~~  457 (604)
                      .-+.|..||.|..|+.-.......++.... +   ......|.|...+.  +..|...... ....+.....|.....++
T Consensus       344 ~C~~C~~g~~G~~Ce~C~~g~~~~~~~~~~-~---~~~~~~C~C~~~~~~~~~~C~~~~~~-~~~~~~~~C~C~~g~~G~  418 (525)
T 4aqs_A          344 VCDNCQHNTMGRNCEQCKPFYFQHPERDIR-D---PNLCEPCTCDPAGSENGGICDGYTDF-SVGLIAGQCRCKLHVEGE  418 (525)
T ss_dssp             EEESCCTTEESTTSCEECTTEEECSSSCTT-C---TTCEEECCCCTTTBSGGGCCCCSCBG-GGTBCSSCCCBCTTEETT
T ss_pred             cccCCCCCCCCCCcccccCcccccCCCCCC-C---CCCCcCCCCCCCCCCCCccccCCCCC-CcCCCCCccCCCCCCCCC
Confidence            345788888888887543333333322111 0   12233455554443  3344321111 111111222333333344


Q ss_pred             EE-ecCCCCCCCCcccCCCcCCCCCCCCCCCCceeec----CCCeEEecCCCCcCCcCc----------ccCCCCCCCCC
Q psy15407        458 EC-RCAPGFQGEFCQTKTPFCAGEYNPCRNGARCLDH----FSHYTCECTPGFSGVNCT----------VNVDDCVNHMC  522 (604)
Q Consensus       458 ~C-~C~~g~~g~~C~~~~~~C~~~~~~C~~~~~C~~~----~~~~~C~C~~g~~g~~c~----------~~~~~C~~~~C  522 (604)
                      .| .|.+||.|..|+ ....|..  ..|.+++.|.+.    ..++.|.|++||+|..|+          .+++.|...+|
T Consensus       419 ~C~~C~~Gy~G~~c~-~~~~C~~--C~C~~~gtc~~~~~Cd~~tg~C~C~~g~~G~~Ce~C~~G~~g~~~~~~~C~~C~C  495 (525)
T 4aqs_A          419 RCDVCKEGFYDLSAE-DPYGCKS--CACNPLGTIPGGNPCDSETGYCYCKRLVTGQRCDQCLPQHWGLSNDLDGCRPCDC  495 (525)
T ss_dssp             TTCEECTTEECCCTT-STTSSEE--CCCCTTTBCCSSCCBCTTTCCBCBCTTCCSTTTCC--------------------
T ss_pred             cccCCCCCCcCCCCC-CCCCCcc--CCCCCCceecCCCcccCCCCEEECCCCCcCCCcccCCCCccCCCCCCCCCcCCCC
Confidence            56 688888887775 3334432  245444444322    235689999999999996          24567887788


Q ss_pred             CCCCEEeeC--CCCeEeeeCCCCccCCCCc
Q psy15407        523 QNGGTCVDG--INDYTCKCEGDFVGKFCEI  550 (604)
Q Consensus       523 ~~~~~C~~~--~~~y~C~C~~G~~G~~C~~  550 (604)
                      .++|.|...  ..+++|.|++||+|.+|+.
T Consensus       496 ~~~gs~~~~C~~~tG~C~C~~G~~G~~Ceq  525 (525)
T 4aqs_A          496 DLGGALNNSCSEDSGQCSCLPHMIGRQCNE  525 (525)
T ss_dssp             ------------------------------
T ss_pred             CCCCccCCccCCCCCeeECCCCCcCCCCCC
Confidence            888776543  2345899999999999973

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.80  E-value=4.3e-11  Score=123.22  Aligned_cols=170  Identities=14%  Similarity=0.013  Sum_probs=115.0

Q ss_pred             CCCCCCccCcEEecCCCcceeecCCC---ccC-CCCCCcEEeCCCCcceecCCCcC-CCcccCCcCCCCCCCCCcccccc
Q psy15407        109 IPKDIPLYTTELILNDNEIGKIKSDG---LFG-RLPNLIKLDLRRNQVTGIEDNAF-EGENDQGCLGDNYCPPKCTCTVR  183 (604)
Q Consensus       109 iP~~l~~~~~~L~L~~N~i~~i~~~~---~f~-~l~~L~~L~Ls~N~i~~i~~~~f-~~l~~L~~L~l~~~~~~~~~~l~  183 (604)
                      ++..+...++.|+|++|.|+......   ++. ..++|++|+|++|.|+......+ ..+.+|+.|+|++|.+.....  
T Consensus        66 l~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~--  143 (372)
T 3un9_A           66 FSAEVLSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEAC--  143 (372)
T ss_dssp             HHHHHHTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHH--
T ss_pred             HHHHHHhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHH--
Confidence            33344566789999999997654321   122 33799999999999876433333 346677888888765421100  


Q ss_pred             EEEccCCccccccccccceeeeeeccccCCccccceeecCCCCceeeccCC----CCCCCCCCCeEEecCCcceeee---
Q psy15407        184 VLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSNF----TFSPLSKLSQLILSYNKLQCID---  256 (604)
Q Consensus       184 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~i~~l~~~----~f~~l~~L~~L~Ls~N~l~~i~---  256 (604)
                                           ..+.........+|+.|+|++|.|+.....    .+..+++|++|+|++|.|+...   
T Consensus       144 ---------------------~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~  202 (372)
T 3un9_A          144 ---------------------KDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLEL  202 (372)
T ss_dssp             ---------------------HHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHH
T ss_pred             ---------------------HHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHH
Confidence                                 000000000123799999999999764322    3467889999999999998643   


Q ss_pred             -ccccCCCCcccEEEccCCccccCCcc----cccCcccceeeeccCCCcc
Q psy15407        257 -RDALAGLKSLRIISLHGNDISMIPEG----AFADLHAITHLAIGGNPLY  301 (604)
Q Consensus       257 -~~~f~~l~~L~~L~Ls~N~l~~i~~~----~f~~l~~L~~L~L~~Npl~  301 (604)
                       ..++...++|+.|+|++|.|+.....    ++...++|++|+|++|++.
T Consensus       203 L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~  252 (372)
T 3un9_A          203 LAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELS  252 (372)
T ss_dssp             HHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred             HHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCC
Confidence             45567788999999999999865432    2345688999999999885

>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor complex, blood coagulation, CL PAIR of basic residues, disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A {Homo sapiens}

Probab=98.77  E-value=4.9e-09  Score=105.51  Aligned_cols=71  Identities=30%  Similarity=0.760  Sum_probs=35.6

Q ss_pred             CCCcCCCCCCCCCCCCceeecCCCeEEecCCCCcCCcCcccCCCCCCCC-CCCCCEEeeCCCCeEeeeCCCCcc
Q psy15407        473 KTPFCAGEYNPCRNGARCLDHFSHYTCECTPGFSGVNCTVNVDDCVNHM-CQNGGTCVDGINDYTCKCEGDFVG  545 (604)
Q Consensus       473 ~~~~C~~~~~~C~~~~~C~~~~~~~~C~C~~g~~g~~c~~~~~~C~~~~-C~~~~~C~~~~~~y~C~C~~G~~G  545 (604)
                      ++++|..  ++|.++++|++..++|+|.|++||+|..|+.++++|...+ -.-...|++..++|+|.|++||.|
T Consensus         4 d~~~C~~--~pC~~~g~C~~~~~~~~C~C~~g~~g~~C~~~~~eC~~~~~~~C~~~C~~~~g~~~C~C~~g~~~   75 (317)
T 3h5c_B            4 GGSPCIS--QPCLHNGSCQDSIWGYTCTCSPGYEGSNCELAKNECHPERTDGCQHFCLPGQESYTCSCAQGYRL   75 (317)
T ss_dssp             --CCTTS--CCCTTTCCCCCCSSSCCCCCSSSCCSSSSCCCSSSCCTTCTTSCSSEEECCSSSCEEECCTTEEC
T ss_pred             cCCcCCC--CCCCCCCEeECCCCCeEEECCCCCcCCccccCcccCCCCCCCCCcCccccCCCeeEEeccccccc
Confidence            3455543  3455555555555555555555555555555555554321 222235555555555555555554

>3u7u_G Neuregulin 1; signaling protein, transferase-transferase regulator complex glycosylation; HET: NAG; 3.03A {Homo sapiens}

Probab=98.74  E-value=4.1e-09  Score=74.53  Aligned_cols=44  Identities=23%  Similarity=0.509  Sum_probs=23.1

Q ss_pred             CCCCcCCCcCCCCCCCCCcEEE-----eCCCCeEEecCCCCCCCCcccC
Q psy15407        430 DRCEINIDDCLSHKCENNATCV-----DLIQAYECRCAPGFQGEFCQTK  473 (604)
Q Consensus       430 ~~C~~~~~~C~~~~C~~~~~C~-----~~~~~~~C~C~~g~~g~~C~~~  473 (604)
                      ..|++++++|...||.++|+|.     +..++|.|.|++||+|..|+..
T Consensus         2 ~~c~~~~~eC~s~pC~NgGtC~~~~~~d~~~~y~C~C~~g~~G~~CE~~   50 (55)
T 3u7u_G            2 TSHLVKCAEKEKTFCVNGGECFMVKDLSNPSRYLCKCPNEFTGDRCQNY   50 (55)
T ss_dssp             -CCEEECCSTTTTTSCTTCEEEEECCC--CCCEEEEECTTEESTTSCEE
T ss_pred             CCCcccCCCCcCCCCCCCCCcCCCCccCCCCCEeEeCCCCCcCCCcCcc
Confidence            4455555555555565555652     3445555666666666555543

>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor complex, blood coagulation, CL PAIR of basic residues, disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A {Homo sapiens}

Probab=98.74  E-value=8.4e-09  Score=103.78  Aligned_cols=74  Identities=32%  Similarity=0.791  Sum_probs=66.0

Q ss_pred             cCCCcCCCCCCCCCcEEEeCCCCeEEecCCCCCCCCcccCCCcCCCC-CCCCCCCCceeecCCCeEEecCCCCcCCc
Q psy15407        434 INIDDCLSHKCENNATCVDLIQAYECRCAPGFQGEFCQTKTPFCAGE-YNPCRNGARCLDHFSHYTCECTPGFSGVN  509 (604)
Q Consensus       434 ~~~~~C~~~~C~~~~~C~~~~~~~~C~C~~g~~g~~C~~~~~~C~~~-~~~C~~~~~C~~~~~~~~C~C~~g~~g~~  509 (604)
                      .++++|...||.++++|++..++|.|.|++||.|..|+.++++|... .++|.+  .|++..++|+|.|++||+|..
T Consensus         3 ~d~~~C~~~pC~~~g~C~~~~~~~~C~C~~g~~g~~C~~~~~eC~~~~~~~C~~--~C~~~~g~~~C~C~~g~~~~~   77 (317)
T 3h5c_B            3 KGGSPCISQPCLHNGSCQDSIWGYTCTCSPGYEGSNCELAKNECHPERTDGCQH--FCLPGQESYTCSCAQGYRLGE   77 (317)
T ss_dssp             ---CCTTSCCCTTTCCCCCCSSSCCCCCSSSCCSSSSCCCSSSCCTTCTTSCSS--EEECCSSSCEEECCTTEECCT
T ss_pred             ccCCcCCCCCCCCCCEeECCCCCeEEECCCCCcCCccccCcccCCCCCCCCCcC--ccccCCCeeEEeccccccccc
Confidence            37899999999999999999999999999999999999999999863 378986  899999999999999999854

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=98.63  E-value=5.5e-10  Score=122.70  Aligned_cols=75  Identities=20%  Similarity=0.090  Sum_probs=41.9

Q ss_pred             CeEEcCCCCCCcCCCCC--CccCcEEecCCCcceeecCCCccCCCCCCcEEeCCCCcceec-CCCcCCCcccCCcCCCC
Q psy15407         97 TRVDCSQRGLKEIPKDI--PLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGI-EDNAFEGENDQGCLGDN  172 (604)
Q Consensus        97 ~~l~cs~~~L~~iP~~l--~~~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i-~~~~f~~l~~L~~L~l~  172 (604)
                      +.+++++.....+|..+  ...+++|+|++|.|+......++..+++|++|+|+ |.+... .+..+..+++|+.|+++
T Consensus       273 ~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~  350 (592)
T 3ogk_B          273 CRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIE  350 (592)
T ss_dssp             CEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEE
T ss_pred             cccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEee
Confidence            45666665555555543  34567788887776433221225677777777777 333321 12223445667777776

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=98.62  E-value=3.2e-07  Score=95.23  Aligned_cols=79  Identities=19%  Similarity=0.277  Sum_probs=58.2

Q ss_pred             cceeecCCCCceeeccCCCCCCCCCCCeEEecCCcceeeeccccCCCCcccEEEccCCccccCCcccccCcccceeeecc
Q psy15407        217 STMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIG  296 (604)
Q Consensus       217 ~L~~L~Ls~N~i~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~  296 (604)
                      +|+.+.|..+ ++.|...+|.++.+|+.++|..+ ++.|...+|.++.+|+.++|..| |+.|...+|....+|+.|.|.
T Consensus       298 ~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp  374 (394)
T 4fs7_A          298 SLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELP  374 (394)
T ss_dssp             TCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEE
T ss_pred             cccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEEC
Confidence            5566666543 77777778888888888887643 77787788888888888888766 777877788877788877776


Q ss_pred             CC
Q psy15407        297 GN  298 (604)
Q Consensus       297 ~N  298 (604)
                      .+
T Consensus       375 ~~  376 (394)
T 4fs7_A          375 KR  376 (394)
T ss_dssp             GG
T ss_pred             CC
Confidence            44

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=98.62  E-value=3.4e-08  Score=110.86  Aligned_cols=123  Identities=20%  Similarity=0.477  Sum_probs=71.2

Q ss_pred             ecCCCCCCCCcccCCCcCC-CCCCCCCCCCceeecCC--CeEEecCCCCcCCcCcccCCCCCCCCCCCCCEEeeCCCCeE
Q psy15407        460 RCAPGFQGEFCQTKTPFCA-GEYNPCRNGARCLDHFS--HYTCECTPGFSGVNCTVNVDDCVNHMCQNGGTCVDGINDYT  536 (604)
Q Consensus       460 ~C~~g~~g~~C~~~~~~C~-~~~~~C~~~~~C~~~~~--~~~C~C~~g~~g~~c~~~~~~C~~~~C~~~~~C~~~~~~y~  536 (604)
                      .|..|..+..|. ....|. .....|.+ +.|++...  .+.+.|..|+.+...+-++++|...+..-...|+++.++|+
T Consensus       257 dC~dgsDE~~C~-~~~~C~~~~~~~C~~-G~Ci~~~~~Cd~~~dC~dgsDe~~~~C~~~~C~~~~~~C~~~C~~~~~~y~  334 (791)
T 3m0c_C          257 DCKDMSDEVGCV-NVTLCEGPNKFKCHS-GECITLDKVCNMARDCRDWSDEPIKECGTNECLDNNGGCSHVCNDLKIGYE  334 (791)
T ss_dssp             -----------------CCSTTCCCCTT-SCCCCSSCCSCSSCCSSSSCSCCCTTBSCCSTTTGGGGCSSEEEECSBSEE
T ss_pred             ccccccccCccc-ccccccCCCccccCC-CcccccccccCCccccccccCccccccccccccccccCccccccCCCCCcc
Confidence            466666666664 233453 23346765 57775432  24567888876544322456665432111248999999999


Q ss_pred             eeeCCCCc---cCCCCcCcccccCCCCCCCCC-CCCCCCCceeCCCCCCCeeeecCCCCcC----CCCC
Q psy15407        537 CKCEGDFV---GKFCEIAPFVAMMYPQTSPCQ-HHDCKNGICFQPQGSNDYLCKCAPGYSG----KESL  597 (604)
Q Consensus       537 C~C~~G~~---G~~C~~~~~~~~~~~~~~~C~-~~~C~~g~C~~~~g~~~~~C~C~~G~~G----~~C~  597 (604)
                      |.|++||.   |..|+.          +++|. ...|.+ .|+++.  ++|+|.|++||.+    +.|.
T Consensus       335 C~C~~Gy~l~~g~~C~d----------ideC~~~~~C~~-~C~n~~--gsy~C~C~~Gy~l~~~~~~C~  390 (791)
T 3m0c_C          335 CLCPDGFQLVAQRRCED----------IDECQDPDTCSQ-LCVNLE--GGYKCQCEEGFQLDPHTKACK  390 (791)
T ss_dssp             EECCTTCEEETTTEEEC----------CCCCSSSSSCTT-TCCBCS--SCBCCCCCSSEECCSSCCCCE
T ss_pred             cCCCCCCccCCCCcccc----------CcccCCCCCCCC-eeecCC--CCceeecCCCCEeCCCCceee
Confidence            99999996   777764          56775 334543 599999  7899999999964    5564

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=98.61  E-value=2.3e-08  Score=112.27  Aligned_cols=160  Identities=26%  Similarity=0.626  Sum_probs=73.9

Q ss_pred             CeeecCCCCceee----eCCCCCcCCCCcccCCCCCC--CCCCCCCeeeeCCCCceEe----eCCCCCcCCCCCcCCCcC
Q psy15407        370 GVCEPLPERQYQC----RCTPGYHGQHCEFMIDACYG--NPCRNSGTCKLLEEGRFNC----ECAPGYTGDRCEINIDDC  439 (604)
Q Consensus       370 g~C~~~~~~~~~C----~C~~g~~G~~c~~~~~~C~~--~~C~~~~~C~~~~~~~~~C----~C~~g~~g~~C~~~~~~C  439 (604)
                      |.|+..   .+.|    .|..|..+..|..  ..|..  ..|.+ +.|+.   +.+.|    .|..|.-+..|. .+.+|
T Consensus       204 g~Ci~~---~~~CDg~~dC~dgsDE~~C~~--~~C~~~~f~C~~-g~Ci~---~~~~Cdg~~dC~dgsDE~~C~-~~~~C  273 (791)
T 3m0c_C          204 GECIHS---SWRCDGGPDCKDKSDEENCAV--ATCRPDEFQCSD-GNCIH---GSRQCDREYDCKDMSDEVGCV-NVTLC  273 (791)
T ss_dssp             -------------------------------------------------------------------------------C
T ss_pred             Cceecc---ccccCCCCCCCCCCCCCCccc--cccCCCcceecC-CceEe---cceecCChhccccccccCccc-ccccc
Confidence            455532   3455    5555555555531  12321  22432 35543   34455    577777777776 34556


Q ss_pred             C---CCCCCCCcEEEeCCC--CeEEecCCCCCCCCcccCCCcCCCCCCCCCCCCceeecCCCeEEecCCCCc---CCcCc
Q psy15407        440 L---SHKCENNATCVDLIQ--AYECRCAPGFQGEFCQTKTPFCAGEYNPCRNGARCLDHFSHYTCECTPGFS---GVNCT  511 (604)
Q Consensus       440 ~---~~~C~~~~~C~~~~~--~~~C~C~~g~~g~~C~~~~~~C~~~~~~C~~~~~C~~~~~~~~C~C~~g~~---g~~c~  511 (604)
                      .   ..+|.+ |.|++...  .+.+.|..|+.+..++-.+++|......|.  ..|+++.++|+|.|++||.   |..|+
T Consensus       274 ~~~~~~~C~~-G~Ci~~~~~Cd~~~dC~dgsDe~~~~C~~~~C~~~~~~C~--~~C~~~~~~y~C~C~~Gy~l~~g~~C~  350 (791)
T 3m0c_C          274 EGPNKFKCHS-GECITLDKVCNMARDCRDWSDEPIKECGTNECLDNNGGCS--HVCNDLKIGYECLCPDGFQLVAQRRCE  350 (791)
T ss_dssp             CSTTCCCCTT-SCCCCSSCCSCSSCCSSSSCSCCCTTBSCCSTTTGGGGCS--SEEEECSBSEEEECCTTCEEETTTEEE
T ss_pred             cCCCccccCC-CcccccccccCCccccccccCccccccccccccccccCcc--ccccCCCCCcccCCCCCCccCCCCccc
Confidence            4   245765 67876432  345678888766543334566765444554  4899999999999999995   78886


Q ss_pred             ccCCCCC-CCCCCCCCEEeeCCCCeEeeeCCCCcc
Q psy15407        512 VNVDDCV-NHMCQNGGTCVDGINDYTCKCEGDFVG  545 (604)
Q Consensus       512 ~~~~~C~-~~~C~~~~~C~~~~~~y~C~C~~G~~G  545 (604)
                       ++++|. ..+|.  +.|+++.|+|+|.|++||.+
T Consensus       351 -dideC~~~~~C~--~~C~n~~gsy~C~C~~Gy~l  382 (791)
T 3m0c_C          351 -DIDECQDPDTCS--QLCVNLEGGYKCQCEEGFQL  382 (791)
T ss_dssp             -CCCCCSSSSSCT--TTCCBCSSCBCCCCCSSEEC
T ss_pred             -cCcccCCCCCCC--CeeecCCCCceeecCCCCEe
Confidence             899997 34565  48999999999999999974

>1edm_B Factor IX; epidermal growth factor, EGF, calcium- binding, EGF-like domain, structure and function, coagulation factor; 1.50A {Homo sapiens} SCOP: g.3.11.1 PDB: 1ixa_A

Probab=98.60  E-value=4.1e-08  Score=64.75  Aligned_cols=37  Identities=49%  Similarity=1.023  Sum_probs=33.5

Q ss_pred             cCCCCCCCCCCCCCEEeeCCCCeEeeeCCCCccCCCC
Q psy15407        513 NVDDCVNHMCQNGGTCVDGINDYTCKCEGDFVGKFCE  549 (604)
Q Consensus       513 ~~~~C~~~~C~~~~~C~~~~~~y~C~C~~G~~G~~C~  549 (604)
                      ++++|..+||.++|+|++..++|+|.|++||+|..|+
T Consensus         2 d~d~C~~~pC~ngg~C~~~~~~~~C~C~~G~~G~~Ce   38 (39)
T 1edm_B            2 DGDQCESNPCLNGGSCKDDINSYECWCPFGFEGKNCE   38 (39)
T ss_dssp             CCCTTTTCCCCTTCEEEEETTEEEEECCTTCCSTTSC
T ss_pred             ccccCCCCCCCCCCEeEcCCCceEeECCCCCcCCccC
Confidence            5788988899999999998999999999999999887

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=98.45  E-value=5.4e-09  Score=114.72  Aligned_cols=83  Identities=11%  Similarity=-0.052  Sum_probs=48.8

Q ss_pred             cceeecCCCCceeeccC-CCCCCCCCCCeEEecCCcceee-eccccCCCCcccEEEcc-----------CCccccCCc-c
Q psy15407        217 STMYRDLSNNQIGFLSN-FTFSPLSKLSQLILSYNKLQCI-DRDALAGLKSLRIISLH-----------GNDISMIPE-G  282 (604)
Q Consensus       217 ~L~~L~Ls~N~i~~l~~-~~f~~l~~L~~L~Ls~N~l~~i-~~~~f~~l~~L~~L~Ls-----------~N~l~~i~~-~  282 (604)
                      +|++|+|++|.++.... ..+..+++|++|+|+ |.+... .+..+..+++|++|+|+           .|.++.... .
T Consensus       294 ~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~  372 (592)
T 3ogk_B          294 QIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIA  372 (592)
T ss_dssp             GCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHH
T ss_pred             CCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHH
Confidence            78888888887654332 235677888888887 443322 12233456777888887           355553211 1


Q ss_pred             cccCcccceeeeccCCCc
Q psy15407        283 AFADLHAITHLAIGGNPL  300 (604)
Q Consensus       283 ~f~~l~~L~~L~L~~Npl  300 (604)
                      .+..+++|+.|+|+.|.+
T Consensus       373 l~~~~~~L~~L~l~~~~l  390 (592)
T 3ogk_B          373 LAQGCQELEYMAVYVSDI  390 (592)
T ss_dssp             HHHHCTTCSEEEEEESCC
T ss_pred             HHhhCccCeEEEeecCCc
Confidence            234466777777755554

>1edm_B Factor IX; epidermal growth factor, EGF, calcium- binding, EGF-like domain, structure and function, coagulation factor; 1.50A {Homo sapiens} SCOP: g.3.11.1 PDB: 1ixa_A

Probab=98.43  E-value=2.3e-07  Score=61.04  Aligned_cols=37  Identities=43%  Similarity=0.977  Sum_probs=24.7

Q ss_pred             CCCcCCCCCCCCCcEEEeCCCCeEEecCCCCCCCCcc
Q psy15407        435 NIDDCLSHKCENNATCVDLIQAYECRCAPGFQGEFCQ  471 (604)
Q Consensus       435 ~~~~C~~~~C~~~~~C~~~~~~~~C~C~~g~~g~~C~  471 (604)
                      ++++|...||.++++|++..++|.|.|++||+|..|+
T Consensus         2 d~d~C~~~pC~ngg~C~~~~~~~~C~C~~G~~G~~Ce   38 (39)
T 1edm_B            2 DGDQCESNPCLNGGSCKDDINSYECWCPFGFEGKNCE   38 (39)
T ss_dssp             CCCTTTTCCCCTTCEEEEETTEEEEECCTTCCSTTSC
T ss_pred             ccccCCCCCCCCCCEeEcCCCceEeECCCCCcCCccC
Confidence            4566666667666677666666777777777666664

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.39  E-value=1.5e-06  Score=89.52  Aligned_cols=132  Identities=14%  Similarity=0.184  Sum_probs=89.6

Q ss_pred             ccCCCCCCcEEeCCCCcceecCCCcCCCcccCCcCCCCCCCCCccccccEEEccCCccccccccccceeeeeeccccCCc
Q psy15407        135 LFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDNYCPPKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNY  214 (604)
Q Consensus       135 ~f~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  214 (604)
                      .|....+|+.+.+..+ ++.|...+|.+...|+.+.+..+                .             ..+.......
T Consensus       212 ~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~----------------v-------------~~I~~~aF~~  261 (379)
T 4h09_A          212 GFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN----------------V-------------TSIGSFLLQN  261 (379)
T ss_dssp             TTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT----------------C-------------CEECTTTTTT
T ss_pred             ccccccccceeeeccc-eeEEccccccCCccceEEEcCCC----------------c-------------cEeCccccce
Confidence            3677777887777544 67777777777766655443321                0             0000000000


Q ss_pred             cccceeecCCCCceeeccCCCCCCCCCCCeEEecCCcceeeeccccCCCCcccEEEccCCccccCCcccccCcccceeee
Q psy15407        215 PVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLA  294 (604)
Q Consensus       215 ~~~L~~L~Ls~N~i~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~  294 (604)
                      ..+|+.+.|.. .++.+...+|.++.+|+.+.|.++.|+.|...+|.+..+|+.+.|..+ ++.|...+|....+|+.|.
T Consensus       262 ~~~l~~i~l~~-~i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~  339 (379)
T 4h09_A          262 CTALKTLNFYA-KVKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTIS  339 (379)
T ss_dssp             CTTCCEEEECC-CCSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCC
T ss_pred             eehhccccccc-cceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEE
Confidence            12455556643 477788888888888888888888888888888888888888888654 8888888888888888887


Q ss_pred             ccCC
Q psy15407        295 IGGN  298 (604)
Q Consensus       295 L~~N  298 (604)
                      |..+
T Consensus       340 ip~~  343 (379)
T 4h09_A          340 YPKS  343 (379)
T ss_dssp             CCTT
T ss_pred             ECCc
Confidence            7544

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=98.38  E-value=3.3e-09  Score=116.44  Aligned_cols=83  Identities=12%  Similarity=0.075  Sum_probs=56.5

Q ss_pred             cceeecCCCCceeeccCCCCCC-CCCCCeEEecCCcceeeecccc-CCCCcccEEEccCCccccCCc-ccccCcccceee
Q psy15407        217 STMYRDLSNNQIGFLSNFTFSP-LSKLSQLILSYNKLQCIDRDAL-AGLKSLRIISLHGNDISMIPE-GAFADLHAITHL  293 (604)
Q Consensus       217 ~L~~L~Ls~N~i~~l~~~~f~~-l~~L~~L~Ls~N~l~~i~~~~f-~~l~~L~~L~Ls~N~l~~i~~-~~f~~l~~L~~L  293 (604)
                      +|+.|+|++ .|+......+.. +++|++|+|++|.|+......+ .++++|+.|+|++|.++.... ..+..+++|+.|
T Consensus       433 ~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L  511 (594)
T 2p1m_B          433 DLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSL  511 (594)
T ss_dssp             TCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEE
T ss_pred             CccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEE
Confidence            677888866 554433323333 6788888888888765544444 557888888998888854332 234557888888


Q ss_pred             eccCCCc
Q psy15407        294 AIGGNPL  300 (604)
Q Consensus       294 ~L~~Npl  300 (604)
                      +|++|++
T Consensus       512 ~l~~~~~  518 (594)
T 2p1m_B          512 WMSSCSV  518 (594)
T ss_dssp             EEESSCC
T ss_pred             eeeCCCC
Confidence            8888887

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.35  E-value=3e-07  Score=95.56  Aligned_cols=67  Identities=25%  Similarity=0.696  Sum_probs=54.6

Q ss_pred             CCCCCCCCCCCCEEeeCCCCeEeeeCCCCc---cCCCCcCcccccCCCCCCCCC-CCCCCCCceeCCCCCCCeeeecCCC
Q psy15407        515 DDCVNHMCQNGGTCVDGINDYTCKCEGDFV---GKFCEIAPFVAMMYPQTSPCQ-HHDCKNGICFQPQGSNDYLCKCAPG  590 (604)
Q Consensus       515 ~~C~~~~C~~~~~C~~~~~~y~C~C~~G~~---G~~C~~~~~~~~~~~~~~~C~-~~~C~~g~C~~~~g~~~~~C~C~~G  590 (604)
                      ++|...+|..++.|++++++|+|.|++||.   |..|+.          .++|. ...|.+ .|+++.  ++|+|.|.+|
T Consensus         1 ~eC~~~~~~c~~~C~~~~~~y~C~C~~G~~~~~~~~C~d----------ideC~~~~~C~~-~C~n~~--g~~~C~C~~g   67 (400)
T 3p5b_L            1 NECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCED----------IDECQDPDTCSQ-LCVNLE--GGYKCQCEEG   67 (400)
T ss_dssp             CCTTTTGGGCSSEEEECSSSEEEECCTTEEECSSSCEEE----------CCCCSTTSSCSS-CCBCCS--SSCBCCCCTT
T ss_pred             CcccCCCCCCCCEeECCCCCeEEECCCCCCcCCCCcccC----------chhhhccCCCCC-ccCCCc--cceeeecccc
Confidence            467766766677999999999999999998   778864          67776 356765 699998  7899999999


Q ss_pred             CcCC
Q psy15407        591 YSGK  594 (604)
Q Consensus       591 ~~G~  594 (604)
                      |.+.
T Consensus        68 ~~~~   71 (400)
T 3p5b_L           68 FQLD   71 (400)
T ss_dssp             CCCC
T ss_pred             cccc
Confidence            9853

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.35  E-value=7.4e-09  Score=100.33  Aligned_cols=77  Identities=25%  Similarity=0.278  Sum_probs=43.7

Q ss_pred             cceeecCCCCceeeccC--CCCCCCCCCCeEEecCCcceeee-ccccCCCCcccEEEccCCcccc-CCc------ccccC
Q psy15407        217 STMYRDLSNNQIGFLSN--FTFSPLSKLSQLILSYNKLQCID-RDALAGLKSLRIISLHGNDISM-IPE------GAFAD  286 (604)
Q Consensus       217 ~L~~L~Ls~N~i~~l~~--~~f~~l~~L~~L~Ls~N~l~~i~-~~~f~~l~~L~~L~Ls~N~l~~-i~~------~~f~~  286 (604)
                      +|+.|+|++|+|+.+..  ..+..+++|+.|+|++|+|+.+. ...+..+ +|++|+|++|.|.. ++.      .++..
T Consensus       171 ~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~~il~~  249 (267)
T 3rw6_A          171 ELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQSTYISAIRER  249 (267)
T ss_dssp             TCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGGGCSSHHHHHHHHHHH
T ss_pred             CCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCccccCcchhHHHHHHHH
Confidence            56666777777766543  34445666777777777766652 1223333 66677777776653 221      23445


Q ss_pred             cccceeee
Q psy15407        287 LHAITHLA  294 (604)
Q Consensus       287 l~~L~~L~  294 (604)
                      +++|+.||
T Consensus       250 ~P~L~~LD  257 (267)
T 3rw6_A          250 FPKLLRLD  257 (267)
T ss_dssp             CTTCCEES
T ss_pred             CcccCeEC
Confidence            55555554

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=98.33  E-value=2.6e-06  Score=88.31  Aligned_cols=81  Identities=23%  Similarity=0.346  Sum_probs=70.2

Q ss_pred             cceeecCCCCceeeccCCCCCCCCCCCeEEecCCcceeeeccccCCCCcccEEEccCCccccCCcccccCcccceeeecc
Q psy15407        217 STMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIG  296 (604)
Q Consensus       217 ~L~~L~Ls~N~i~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~  296 (604)
                      .|+.+.|. +.++.|+..+|.++.+|+.+.|..+ ++.|...+|.++.+|+.|.|..+ ++.|...+|....+|+.+++.
T Consensus       289 ~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~  365 (394)
T 4gt6_A          289 ALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYS  365 (394)
T ss_dssp             TCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEES
T ss_pred             ccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEEC
Confidence            56677774 6688899999999999999999864 89999999999999999999654 899999999999999999999


Q ss_pred             CCCc
Q psy15407        297 GNPL  300 (604)
Q Consensus       297 ~Npl  300 (604)
                      +|..
T Consensus       366 ~~~~  369 (394)
T 4gt6_A          366 GSRS  369 (394)
T ss_dssp             SCHH
T ss_pred             Ccee
Confidence            8754

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.33  E-value=7.5e-08  Score=99.62  Aligned_cols=74  Identities=19%  Similarity=0.539  Sum_probs=20.3

Q ss_pred             cCCCCCCCCCCCCCEEeeCCCCeEeeeCCCCc----cCCCCcCcccccCCCCCCCCC-CCCCCCCceeCCCCCCCeeeec
Q psy15407        513 NVDDCVNHMCQNGGTCVDGINDYTCKCEGDFV----GKFCEIAPFVAMMYPQTSPCQ-HHDCKNGICFQPQGSNDYLCKC  587 (604)
Q Consensus       513 ~~~~C~~~~C~~~~~C~~~~~~y~C~C~~G~~----G~~C~~~~~~~~~~~~~~~C~-~~~C~~g~C~~~~g~~~~~C~C  587 (604)
                      ++++|..+++...+.|.+..|+|+|.|++||+    |..|+.          .++|. ...|.++ |+++.  ++|+|.|
T Consensus         2 ~~~~C~~~~~~c~~~C~~~~g~~~C~C~~G~~l~~~~~~C~d----------~~eC~~~~~C~~~-C~~~~--g~~~C~C   68 (386)
T 3v65_B            2 GEENCNVNNGGCAQKCQMIRGAVQCTCHTGYRLTEDGRTCQD----------VNECAEEGYCSQG-CTNSE--GAFQCWC   68 (386)
T ss_dssp             ------------------------------------------------------------CCTTE-EC-------CCEEC
T ss_pred             CcCcccCCCCCCCCCCcCCCCCcEeECCCCceECCCCCccCc----------cceeCCcCcccCc-CCCCC--CCCeEEE
Confidence            57888876654445899889999999999998    888864          67785 5678765 99999  7899999


Q ss_pred             CCCCc----CCCCCCC
Q psy15407        588 APGYS----GKESLLQ  599 (604)
Q Consensus       588 ~~G~~----G~~C~~~  599 (604)
                      ++||.    |+.|+..
T Consensus        69 ~~g~~l~~d~~~C~~~   84 (386)
T 3v65_B           69 EAGYELRPDRRSCKAL   84 (386)
T ss_dssp             CTTEEECTTSSCEEEC
T ss_pred             CCCceEcCCCCeECCc
Confidence            99998    8888753

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=98.32  E-value=2.3e-06  Score=88.69  Aligned_cols=72  Identities=15%  Similarity=0.300  Sum_probs=58.0

Q ss_pred             CceeeccCCCCCCCCCCCeEEecCCcceeeeccccCCCCcccEEEccCCccccCCcccccCcccceeeeccCCC
Q psy15407        226 NQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIGGNP  299 (604)
Q Consensus       226 N~i~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~Np  299 (604)
                      +.+..+...+|.++.+|+.+.|..+ +..|...+|.+..+|+.+.|..| ++.|...+|.....|+.+.+..+.
T Consensus       148 ~~~~~i~~~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~  219 (394)
T 4fs7_A          148 EGVTVIGDEAFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSL  219 (394)
T ss_dssp             TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTC
T ss_pred             ccccccchhhhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCc
Confidence            4455677788999999999998754 67788889999899999988776 888888888888888888777654

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.31  E-value=3.4e-07  Score=95.10  Aligned_cols=67  Identities=34%  Similarity=0.850  Sum_probs=54.3

Q ss_pred             CCCCCCCCCCCCeeeeCCCCceEeeCCCCCc---CCCCCcCCCcCC-CCCCCCCcEEEeCCCCeEEecCCCCCCC
Q psy15407        398 DACYGNPCRNSGTCKLLEEGRFNCECAPGYT---GDRCEINIDDCL-SHKCENNATCVDLIQAYECRCAPGFQGE  468 (604)
Q Consensus       398 ~~C~~~~C~~~~~C~~~~~~~~~C~C~~g~~---g~~C~~~~~~C~-~~~C~~~~~C~~~~~~~~C~C~~g~~g~  468 (604)
                      ++|..++|.+.+.|.+ ..++|.|.|++||+   |..|+ ++++|. +.+|.+  .|+++.++|.|.|.+||.+.
T Consensus         1 ~eC~~~~~~c~~~C~~-~~~~y~C~C~~G~~~~~~~~C~-dideC~~~~~C~~--~C~n~~g~~~C~C~~g~~~~   71 (400)
T 3p5b_L            1 NECLDNNGGCSHVCND-LKIGYECLCPDGFQLVAQRRCE-DIDECQDPDTCSQ--LCVNLEGGYKCQCEEGFQLD   71 (400)
T ss_dssp             CCTTTTGGGCSSEEEE-CSSSEEEECCTTEEECSSSCEE-ECCCCSTTSSCSS--CCBCCSSSCBCCCCTTCCCC
T ss_pred             CcccCCCCCCCCEeEC-CCCCeEEECCCCCCcCCCCccc-CchhhhccCCCCC--ccCCCccceeeecccccccc
Confidence            5788888888888887 46788889988887   77886 888887 467764  88888888888888888865

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=98.31  E-value=7e-08  Score=101.60  Aligned_cols=78  Identities=28%  Similarity=0.773  Sum_probs=34.0

Q ss_pred             EecCCCCcCCcCcccCCCCCCCCCCCCCEEeeCCCCeEeeeCCCCccCCCCcCcccccCCCCCCCCCCCCCCCCc-eeCC
Q psy15407        499 CECTPGFSGVNCTVNVDDCVNHMCQNGGTCVDGINDYTCKCEGDFVGKFCEIAPFVAMMYPQTSPCQHHDCKNGI-CFQP  577 (604)
Q Consensus       499 C~C~~g~~g~~c~~~~~~C~~~~C~~~~~C~~~~~~y~C~C~~G~~G~~C~~~~~~~~~~~~~~~C~~~~C~~g~-C~~~  577 (604)
                      +.|..+|.|..|+  .++|.. +|.+ |+|+..   ++|.|++||+|..|+.           ..|.. .|.|++ |++.
T Consensus       379 ~~C~~~~~g~~c~--~~~C~~-~C~n-G~C~~~---~~C~C~~G~~G~~C~~-----------~~C~~-~C~~~g~C~~~  439 (463)
T 2wg3_C          379 EECRATVQPAQTL--TSECSR-LCRN-GYCTPT---GKCCCSPGWEGDFCRT-----------AKCEP-ACRHGGVCVRP  439 (463)
T ss_dssp             GGGCCCCCCCCCC--CCHHHH-HCCS-EEECTT---SCEEECTTEESTTSCE-----------ECC--------------
T ss_pred             ccCCCCCcCCCCc--cccccC-CCCC-CccCCC---CeECCCCCcCCCcCCc-----------CcCCC-CCCCCCEECCC
Confidence            4677888888775  356754 5876 788753   3788888888888873           24554 676654 8753


Q ss_pred             CCCCCeeeecCCCCcCCCCCCCc
Q psy15407        578 QGSNDYLCKCAPGYSGKESLLQQ  600 (604)
Q Consensus       578 ~g~~~~~C~C~~G~~G~~C~~~~  600 (604)
                           ++|.|++||+|..||..+
T Consensus       440 -----~~C~C~~G~~G~~C~~~~  457 (463)
T 2wg3_C          440 -----NKCLCKKGYLGPQCEQVD  457 (463)
T ss_dssp             -----------------------
T ss_pred             -----CEEECCCCcccCCCCCCc
Confidence                 468888888888888754

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.30  E-value=9.5e-08  Score=98.85  Aligned_cols=53  Identities=25%  Similarity=0.806  Sum_probs=9.7

Q ss_pred             ceeecCCCeEEecCCCCc----CCcCcccCCCCC-CCCCCCCCEEeeCCCCeEeeeCCCCc
Q psy15407        489 RCLDHFSHYTCECTPGFS----GVNCTVNVDDCV-NHMCQNGGTCVDGINDYTCKCEGDFV  544 (604)
Q Consensus       489 ~C~~~~~~~~C~C~~g~~----g~~c~~~~~~C~-~~~C~~~~~C~~~~~~y~C~C~~G~~  544 (604)
                      .|.+..++|+|.|++||+    |..| .++++|. ..+|.+  .|+++.|+|+|.|++||.
T Consensus        16 ~C~~~~g~~~C~C~~G~~l~~~~~~C-~d~~eC~~~~~C~~--~C~~~~g~~~C~C~~g~~   73 (386)
T 3v65_B           16 KCQMIRGAVQCTCHTGYRLTEDGRTC-QDVNECAEEGYCSQ--GCTNSEGAFQCWCEAGYE   73 (386)
T ss_dssp             -------------------------------------CCTT--EEC-----CCEECCTTEE
T ss_pred             CCcCCCCCcEeECCCCceECCCCCcc-CccceeCCcCcccC--cCCCCCCCCeEEECCCce
Confidence            455555555566666655    5555 3555564 345554  266666666666666665

>1hae_A Heregulin-alpha; growth factor; NMR {Homo sapiens} SCOP: g.3.11.1 PDB: 1haf_A 1hre_A 1hrf_A

Probab=98.30  E-value=2.8e-07  Score=67.88  Aligned_cols=49  Identities=33%  Similarity=0.697  Sum_probs=39.9

Q ss_pred             cccCCCCcCCCCCCCCeeecC----CCCceeeeCCCCCcCCCCcccCCCCCCC
Q psy15407        355 LSKCNACYKSPCTNQGVCEPL----PERQYQCRCTPGYHGQHCEFMIDACYGN  403 (604)
Q Consensus       355 ~~~c~~C~~~~C~~~g~C~~~----~~~~~~C~C~~g~~G~~c~~~~~~C~~~  403 (604)
                      ..+|++|..+||.|+|+|+..    ..+.|.|.|++||+|..|+.++++|...
T Consensus         3 ~~~c~~C~~~pC~ngG~C~~~~~~~~~~~y~C~C~~Gf~G~~Ce~~i~~~~~~   55 (63)
T 1hae_A            3 LVKCAEKEKTFCVNGGECFMVKDLSNPSRYLCKCQPGFTGARCTENVPMKVQN   55 (63)
T ss_dssp             EEECCHHHHTTSCTTCEEEEEESSSSSCCEEEECCTTEESTTSCEECCSSCTT
T ss_pred             cCccCCCCCCcCCCCcEEecCCccCCCCCEEEECCCCCcCCccCcCcCccccc
Confidence            356788989999999999862    3467999999999999999888877653

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.27  E-value=3.2e-06  Score=87.01  Aligned_cols=139  Identities=22%  Similarity=0.224  Sum_probs=105.7

Q ss_pred             cCcEEecCCCcceeecCCCccCCCCCCcEEeCCCCcceecCCCcCCCcccCCcCCCCCCCCCccccccEEEccCCccccc
Q psy15407        116 YTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDNYCPPKCTCTVRVLFYDGRAGECY  195 (604)
Q Consensus       116 ~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~l~~~~~~~~~~l~~l~~~~~~~~~~  195 (604)
                      .++.+.+..+ +..|.. .+|.+..+|+.+.|..+ ++.|...+|.+..+|+.+.+...                .    
T Consensus       218 ~l~~i~~~~~-~~~i~~-~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~----------------i----  274 (379)
T 4h09_A          218 NLKKITITSG-VTTLGD-GAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK----------------V----  274 (379)
T ss_dssp             SCSEEECCTT-CCEECT-TTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC----------------C----
T ss_pred             ccceeeeccc-eeEEcc-ccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc----------------c----
Confidence            4566666544 677765 45899999999999876 88999999998887765544321                0    


Q ss_pred             cccccceeeeeeccccCCccccceeecCCCCceeeccCCCCCCCCCCCeEEecCCcceeeeccccCCCCcccEEEccCCc
Q psy15407        196 IAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGND  275 (604)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~i~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~  275 (604)
                               ..+.......-.+|+.+.|.++.|+.|...+|.++.+|+.+.|..+ ++.|...+|.+..+|+.+.|..+ 
T Consensus       275 ---------~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-  343 (379)
T 4h09_A          275 ---------KTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-  343 (379)
T ss_dssp             ---------SEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-
T ss_pred             ---------eeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-
Confidence                     0001000011137889999999999999999999999999999765 99999999999999999999765 


Q ss_pred             cccCCcccccCcc
Q psy15407        276 ISMIPEGAFADLH  288 (604)
Q Consensus       276 l~~i~~~~f~~l~  288 (604)
                      ++.|...+|..-.
T Consensus       344 v~~I~~~aF~~c~  356 (379)
T 4h09_A          344 ITLIESGAFEGSS  356 (379)
T ss_dssp             CCEECTTTTTTSS
T ss_pred             cCEEchhHhhCCC
Confidence            8899998887653

>1egf_A Epidermal growth factor; NMR {Mus musculus} SCOP: g.3.11.1 PDB: 1epg_A 1eph_A 1epi_A 1epj_A 3egf_A 1gk5_A

Probab=98.26  E-value=7.3e-07  Score=62.98  Aligned_cols=39  Identities=31%  Similarity=0.904  Sum_probs=34.6

Q ss_pred             cCCCCCCC---CCCCCCEEe--eCCCCeEeeeCCCCccCCCCcC
Q psy15407        513 NVDDCVNH---MCQNGGTCV--DGINDYTCKCEGDFVGKFCEIA  551 (604)
Q Consensus       513 ~~~~C~~~---~C~~~~~C~--~~~~~y~C~C~~G~~G~~C~~~  551 (604)
                      ++++|...   ||.++|+|+  +..++|+|.|++||+|.+|+..
T Consensus         2 ~i~~C~~~~~~pC~ngg~C~~~~~~~~~~C~C~~G~~G~~Ce~~   45 (53)
T 1egf_A            2 SYPGCPSSYDGYCLNGGVCMHIESLDSYTCNCVIGYSGDRCQTR   45 (53)
T ss_dssp             EECCCCTTSSCSSCSSCEEEEESSSSCEEEECCTTCCSSSSCCC
T ss_pred             CcccCCCCCCCcCCCCcEEEeeCCCCCEEEECCCCCcCCcCCcc
Confidence            46788776   999999999  7889999999999999999864

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=98.25  E-value=2.8e-08  Score=109.00  Aligned_cols=186  Identities=11%  Similarity=0.011  Sum_probs=101.2

Q ss_pred             CeEEcCCCCCCc-CCCCC---CccCcEEecCCC-ccee--ecCCCccCCCCCCcEEeCCCCcceecCCCcCC----Cccc
Q psy15407         97 TRVDCSQRGLKE-IPKDI---PLYTTELILNDN-EIGK--IKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFE----GEND  165 (604)
Q Consensus        97 ~~l~cs~~~L~~-iP~~l---~~~~~~L~L~~N-~i~~--i~~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~----~l~~  165 (604)
                      +.|+++++.++. .+..+   .+.+++|+|+++ .++.  ++  .++..+++|++|+|++|.|+......+.    .+++
T Consensus       108 ~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~--~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~  185 (594)
T 2p1m_B          108 EEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLA--AIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTS  185 (594)
T ss_dssp             CEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHH--HHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCC
T ss_pred             CeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHH--HHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCc
Confidence            788998888763 22222   357899999988 5655  33  2355789999999999998876554443    5568


Q ss_pred             CCcCCCCCCC--CC---------ccccccEEEccCCccccccccccceeeeeeccccCCccccceeecC-------CCCc
Q psy15407        166 QGCLGDNYCP--PK---------CTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDL-------SNNQ  227 (604)
Q Consensus       166 L~~L~l~~~~--~~---------~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L-------s~N~  227 (604)
                      |+.|+++++.  ..         ....++.+.+..+....           .+..+.... .+|+.|++       +.|.
T Consensus       186 L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~-----------~l~~~~~~~-~~L~~L~l~~~~~~~~~~~  253 (594)
T 2p1m_B          186 LVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLE-----------KLATLLQRA-PQLEELGTGGYTAEVRPDV  253 (594)
T ss_dssp             CCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHH-----------HHHHHHHHC-TTCSEEECSBCCCCCCHHH
T ss_pred             CcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHH-----------HHHHHHhcC-CcceEcccccccCccchhh
Confidence            8888888764  10         00122222222110000           000000001 13444442       2222


Q ss_pred             eeeccCCCCCCCCCCCeE-EecCCcceeeeccccCCCCcccEEEccCCccccCC-cccccCcccceeeeccCC
Q psy15407        228 IGFLSNFTFSPLSKLSQL-ILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIP-EGAFADLHAITHLAIGGN  298 (604)
Q Consensus       228 i~~l~~~~f~~l~~L~~L-~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~-~~~f~~l~~L~~L~L~~N  298 (604)
                      +..+.. .|.++++|+.| .+.......+ +..+..+++|++|+|++|.|+... ...+..+++|+.|+|++|
T Consensus       254 ~~~l~~-~l~~~~~L~~Ls~~~~~~~~~l-~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~  324 (594)
T 2p1m_B          254 YSGLSV-ALSGCKELRCLSGFWDAVPAYL-PAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY  324 (594)
T ss_dssp             HHHHHH-HHHTCTTCCEEECCBTCCGGGG-GGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG
T ss_pred             HHHHHH-HHhcCCCcccccCCcccchhhH-HHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc
Confidence            333332 34455555555 3333222222 222335688999999999866322 223557788999999877

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=98.23  E-value=1.4e-07  Score=99.39  Aligned_cols=79  Identities=32%  Similarity=0.756  Sum_probs=38.1

Q ss_pred             EEecCCCCCCCCcccCCCcCCCCCCCCCCCCceeecCCCeEEecCCCCcCCcCcccCCCCCCCCCCCCCEEeeCCCCeEe
Q psy15407        458 ECRCAPGFQGEFCQTKTPFCAGEYNPCRNGARCLDHFSHYTCECTPGFSGVNCTVNVDDCVNHMCQNGGTCVDGINDYTC  537 (604)
Q Consensus       458 ~C~C~~g~~g~~C~~~~~~C~~~~~~C~~~~~C~~~~~~~~C~C~~g~~g~~c~~~~~~C~~~~C~~~~~C~~~~~~y~C  537 (604)
                      .+.|..+|.|..|+.  +.|..   +|.+ ++|++.   ++|.|.+||+|..|+  ++.|.. +|.++|+|+..   |+|
T Consensus       378 p~~C~~~~~g~~c~~--~~C~~---~C~n-G~C~~~---~~C~C~~G~~G~~C~--~~~C~~-~C~~~g~C~~~---~~C  442 (463)
T 2wg3_C          378 PEECRATVQPAQTLT--SECSR---LCRN-GYCTPT---GKCCCSPGWEGDFCR--TAKCEP-ACRHGGVCVRP---NKC  442 (463)
T ss_dssp             CGGGCCCCCCCCCCC--CHHHH---HCCS-EEECTT---SCEEECTTEESTTSC--EECC--------------------
T ss_pred             cccCCCCCcCCCCcc--ccccC---CCCC-CccCCC---CeECCCCCcCCCcCC--cCcCCC-CCCCCCEECCC---CEE
Confidence            367888999998864  56763   5886 789753   479999999999996  467877 89999999865   589


Q ss_pred             eeCCCCccCCCCcC
Q psy15407        538 KCEGDFVGKFCEIA  551 (604)
Q Consensus       538 ~C~~G~~G~~C~~~  551 (604)
                      .|++||+|..|+..
T Consensus       443 ~C~~G~~G~~C~~~  456 (463)
T 2wg3_C          443 LCKKGYLGPQCEQV  456 (463)
T ss_dssp             --------------
T ss_pred             ECCCCcccCCCCCC
Confidence            99999999999863

>1k36_A Epiregulin; EGF-like fold, hormone/growth factor complex; NMR {Homo sapiens} SCOP: g.3.11.1 PDB: 1k37_A

Probab=98.19  E-value=5.7e-07  Score=61.17  Aligned_cols=40  Identities=23%  Similarity=0.537  Sum_probs=31.8

Q ss_pred             CCCCCC---CCCCCCceeCCCCCCCeeeecCCCCcCCCCCCCc
Q psy15407        561 TSPCQH---HDCKNGICFQPQGSNDYLCKCAPGYSGKESLLQQ  600 (604)
Q Consensus       561 ~~~C~~---~~C~~g~C~~~~g~~~~~C~C~~G~~G~~C~~~~  600 (604)
                      +++|..   ++|.||.|....+.++|+|.|++||+|++||...
T Consensus         3 i~~C~~~~~~pC~nG~C~~~~~~~~~~C~C~~GytG~~Ce~~~   45 (46)
T 1k36_A            3 ITKCSSDMNGYCLHGQCIYLVDMSQNYCRCEVGYTGVRCEHFF   45 (46)
T ss_dssp             EECCCTTCCSSCSSEEEEEETTTTEEEEEECTTCSSTTSCCCC
T ss_pred             cccCCCCCCCCCCCCEeeccCCCCCEEEECCCCCccCCCCccc
Confidence            456666   7899977987554468999999999999999753

>1egf_A Epidermal growth factor; NMR {Mus musculus} SCOP: g.3.11.1 PDB: 1epg_A 1eph_A 1epi_A 1epj_A 3egf_A 1gk5_A

Probab=98.16  E-value=2.2e-06  Score=60.49  Aligned_cols=39  Identities=33%  Similarity=0.902  Sum_probs=24.5

Q ss_pred             CCcCCCC---CCCCCcEEE--eCCCCeEEecCCCCCCCCcccCC
Q psy15407        436 IDDCLSH---KCENNATCV--DLIQAYECRCAPGFQGEFCQTKT  474 (604)
Q Consensus       436 ~~~C~~~---~C~~~~~C~--~~~~~~~C~C~~g~~g~~C~~~~  474 (604)
                      +++|.+.   ||.++|+|+  +..++|.|.|++||+|..|+..+
T Consensus         3 i~~C~~~~~~pC~ngg~C~~~~~~~~~~C~C~~G~~G~~Ce~~~   46 (53)
T 1egf_A            3 YPGCPSSYDGYCLNGGVCMHIESLDSYTCNCVIGYSGDRCQTRD   46 (53)
T ss_dssp             ECCCCTTSSCSSCSSCEEEEESSSSCEEEECCTTCCSSSSCCCS
T ss_pred             cccCCCCCCCcCCCCcEEEeeCCCCCEEEECCCCCcCCcCCccC
Confidence            4556554   666666666  55666666666666666665443

>2k2s_B Micronemal protein 6; microneme protein complex, cell adhesion, cytoplasmic vesicl lectin, virulence, EGF-like domain, membrane; NMR {Toxoplasma gondii} PDB: 2k2t_A

Probab=98.16  E-value=4.3e-07  Score=65.64  Aligned_cols=38  Identities=21%  Similarity=0.518  Sum_probs=34.4

Q ss_pred             cCCCCCCCCCCCC--CEEeeCCCCeEeeeCCCCc-cCCCCc
Q psy15407        513 NVDDCVNHMCQNG--GTCVDGINDYTCKCEGDFV-GKFCEI  550 (604)
Q Consensus       513 ~~~~C~~~~C~~~--~~C~~~~~~y~C~C~~G~~-G~~C~~  550 (604)
                      ++++|..+||.++  |+|++..++|+|.|++||+ |..|+.
T Consensus        10 ~~d~C~snPC~nga~gtC~~~~g~y~C~C~~Gy~~G~~C~~   50 (61)
T 2k2s_B           10 TPAACSSNPCGPEAAGTCKETNSGYICRCNQGYRISLDGTG   50 (61)
T ss_dssp             SCCHHHHCSSCSSSCCEEEECSSEEEEECCTTEEEEECSSS
T ss_pred             CCCcCcCCCCcCCCccccccCCCceEeECCCCCccCCCCCC
Confidence            5688888999998  8999999999999999999 999975

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.16  E-value=2.6e-07  Score=89.49  Aligned_cols=79  Identities=24%  Similarity=0.365  Sum_probs=62.0

Q ss_pred             ecCCCCceeeccC---CCCCCCCCCCeEEecCCcceeeec--cccCCCCcccEEEccCCccccCCcccccCcc--cceee
Q psy15407        221 RDLSNNQIGFLSN---FTFSPLSKLSQLILSYNKLQCIDR--DALAGLKSLRIISLHGNDISMIPEGAFADLH--AITHL  293 (604)
Q Consensus       221 L~Ls~N~i~~l~~---~~f~~l~~L~~L~Ls~N~l~~i~~--~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~--~L~~L  293 (604)
                      ++++.|++..++.   ....++++|+.|+|++|+|+.+..  ..+..+++|+.|+|++|+|+.+..  +..+.  +|+.|
T Consensus       148 l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~--l~~l~~l~L~~L  225 (267)
T 3rw6_A          148 IDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERE--LDKIKGLKLEEL  225 (267)
T ss_dssp             CCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGG--GGGGTTSCCSEE
T ss_pred             ccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchh--hhhcccCCcceE
Confidence            6778886554432   223568899999999999999864  556789999999999999998832  44444  89999


Q ss_pred             eccCCCcc
Q psy15407        294 AIGGNPLY  301 (604)
Q Consensus       294 ~L~~Npl~  301 (604)
                      +|++||+.
T Consensus       226 ~L~~Npl~  233 (267)
T 3rw6_A          226 WLDGNSLC  233 (267)
T ss_dssp             ECTTSTTG
T ss_pred             EccCCcCc
Confidence            99999984

>3ca7_A Protein spitz; argos, EGF, developmental protein, differentiation, EGF-like domain, endoplasmic reticulum, glycoprotein, golgi apparatus; 1.50A {Drosophila melanogaster} PDB: 3c9a_C 3ltg_D

Probab=98.16  E-value=2e-07  Score=65.62  Aligned_cols=42  Identities=31%  Similarity=0.775  Sum_probs=34.7

Q ss_pred             eEEecCCCCcCCcCcccCCCCCCCCCCCCCEEee----CCCCeEeeeCCCCccCCCCc
Q psy15407        497 YTCECTPGFSGVNCTVNVDDCVNHMCQNGGTCVD----GINDYTCKCEGDFVGKFCEI  550 (604)
Q Consensus       497 ~~C~C~~g~~g~~c~~~~~~C~~~~C~~~~~C~~----~~~~y~C~C~~G~~G~~C~~  550 (604)
                      ++|.|++||+            .+||.++|+|+.    ..++|+|.|++||+|.+||.
T Consensus         3 ~~C~C~~g~~------------~~pC~NGGtC~~~~~~~~~~y~C~C~~Gf~G~~Ce~   48 (52)
T 3ca7_A            3 PTYKCPETFD------------AWYCLNDAHCFAVKIADLPVYSCECAIGFMGQRCEY   48 (52)
T ss_dssp             CCBCCCHHHH------------HHTSCTTCEEEEEEETTEEEEEEECCTTEESTTSCE
T ss_pred             eeeECCCCCc------------CCcCCCCCEEecCccCCCCCEEEECCCCCcCCCCcc
Confidence            3588888887            347889999986    45689999999999999985

>3zyj_B Netrin-G1; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=98.15  E-value=9.1e-07  Score=89.87  Aligned_cols=110  Identities=19%  Similarity=0.517  Sum_probs=37.1

Q ss_pred             CCCC-CeeecCCCCceeeeCCCCCcCCCCcccCCCCCCCCCCCCCeeeeCCCCceEe-eCCCCCcCCCCCcCCCcCCCCC
Q psy15407        366 CTNQ-GVCEPLPERQYQCRCTPGYHGQHCEFMIDACYGNPCRNSGTCKLLEEGRFNC-ECAPGYTGDRCEINIDDCLSHK  443 (604)
Q Consensus       366 C~~~-g~C~~~~~~~~~C~C~~g~~G~~c~~~~~~C~~~~C~~~~~C~~~~~~~~~C-~C~~g~~g~~C~~~~~~C~~~~  443 (604)
                      |..+ ..|.... +.+.|.|+.+++|..|+.-.......|+..++.|.......+.| .|+-++.|..|+...     .+
T Consensus       299 CnGHas~C~~~~-g~~~C~C~~~ttG~~CE~C~pgy~~~P~~~gt~~p~~~g~~~~C~pC~Cn~~g~~CD~~t-----~~  372 (426)
T 3zyj_B          299 CNLHATVCVYDN-SKLTCECEHNTTGPDCGKCKKNYQGRPWSPGSYLPIPKGAANACIPSISSIGTNVCDNEL-----LH  372 (426)
T ss_dssp             CSSSCSCEEEET-TEEEECCCTTEESSSSCEECTTCCSSCCCCCBCCSSSSCBCCCCCCCCC------------------
T ss_pred             CCCchhhcCCCC-CCceeeCCCCCcCCCccccccccccCcccCCcccccCCCCCCcccCCCCCCCcCccccCc-----cc
Confidence            5444 4677654 56899999999999999765556666776544332222334456 345455666775332     46


Q ss_pred             CCCCcEEEeCCCCeEEecCCCCCCCCcccCCCcCCCCCCCCCCCCceeec
Q psy15407        444 CENNATCVDLIQAYECRCAPGFQGEFCQTKTPFCAGEYNPCRNGARCLDH  493 (604)
Q Consensus       444 C~~~~~C~~~~~~~~C~C~~g~~g~~C~~~~~~C~~~~~~C~~~~~C~~~  493 (604)
                      |.++|+|.+..   .|.|++||.|..|+.         -.|.++|+|...
T Consensus       373 C~ngg~C~~~~---~C~C~~G~~G~~Ce~---------c~C~~~g~C~~~  410 (426)
T 3zyj_B          373 CQNGGTCHNNV---RCLCPAAYTGILCEK---------LRCEEAGSCGSD  410 (426)
T ss_dssp             --------------------------------------------------
T ss_pred             CCCCCCcCCCC---CCcCCCCCcCCCCcC---------CCCCCCCcccCC
Confidence            77777787654   678888888877753         145555666543

>3zyj_B Netrin-G1; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=98.13  E-value=6.9e-07  Score=90.76  Aligned_cols=113  Identities=19%  Similarity=0.479  Sum_probs=30.2

Q ss_pred             eeeeCCCCceEeeCCCCCcCCCCCcCCCcCCCCCCCCCcEE-EeCCCCeEEe-cCCCCCCCCcccCCCcCCCCCCCCCCC
Q psy15407        410 TCKLLEEGRFNCECAPGYTGDRCEINIDDCLSHKCENNATC-VDLIQAYECR-CAPGFQGEFCQTKTPFCAGEYNPCRNG  487 (604)
Q Consensus       410 ~C~~~~~~~~~C~C~~g~~g~~C~~~~~~C~~~~C~~~~~C-~~~~~~~~C~-C~~g~~g~~C~~~~~~C~~~~~~C~~~  487 (604)
                      .|... .+.+.|.|+.+++|..|+.-.+.....|+.+++.| +.....+.|. |.-++.|..|+..       ..+|.++
T Consensus       305 ~C~~~-~g~~~C~C~~~ttG~~CE~C~pgy~~~P~~~gt~~p~~~g~~~~C~pC~Cn~~g~~CD~~-------t~~C~ng  376 (426)
T 3zyj_B          305 VCVYD-NSKLTCECEHNTTGPDCGKCKKNYQGRPWSPGSYLPIPKGAANACIPSISSIGTNVCDNE-------LLHCQNG  376 (426)
T ss_dssp             CEEEE-TTEEEECCCTTEESSSSCEECTTCCSSCCCCCBCCSSSSCBCCCCCCCCC------------------------
T ss_pred             hcCCC-CCCceeeCCCCCcCCCccccccccccCcccCCcccccCCCCCCcccCCCCCCCcCccccC-------cccCCCC
Confidence            45442 45689999999999999853333334455544322 1222334563 4445556666432       3588888


Q ss_pred             CceeecCCCeEEecCCCCcCCcCcccCCCCCCCCCCCCCEEeeCCCCeEeeeCCC
Q psy15407        488 ARCLDHFSHYTCECTPGFSGVNCTVNVDDCVNHMCQNGGTCVDGINDYTCKCEGD  542 (604)
Q Consensus       488 ~~C~~~~~~~~C~C~~g~~g~~c~~~~~~C~~~~C~~~~~C~~~~~~y~C~C~~G  542 (604)
                      ++|.+..   +|.|++||+|..|+.       .+|.++|+|+...|  .|.=+.|
T Consensus       377 g~C~~~~---~C~C~~G~~G~~Ce~-------c~C~~~g~C~~~~G--qc~~~~~  419 (426)
T 3zyj_B          377 GTCHNNV---RCLCPAAYTGILCEK-------LRCEEAGSCGSDSG--QGAPPHG  419 (426)
T ss_dssp             -------------------------------------------------------
T ss_pred             CCcCCCC---CCcCCCCCcCCCCcC-------CCCCCCCcccCCCC--ccCCCCC
Confidence            8997765   799999999988752       25777888887766  5544443

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.11  E-value=1.5e-07  Score=86.54  Aligned_cols=85  Identities=9%  Similarity=-0.037  Sum_probs=46.4

Q ss_pred             cceeecCCCCceeecc----CCCCCCCCCCCeEEecCCcceeee----ccccCCCCcccEEEc--cCCccccCCc----c
Q psy15407        217 STMYRDLSNNQIGFLS----NFTFSPLSKLSQLILSYNKLQCID----RDALAGLKSLRIISL--HGNDISMIPE----G  282 (604)
Q Consensus       217 ~L~~L~Ls~N~i~~l~----~~~f~~l~~L~~L~Ls~N~l~~i~----~~~f~~l~~L~~L~L--s~N~l~~i~~----~  282 (604)
                      +|++|+|++|.|..-.    ...+...++|++|+|++|.|....    ..++...++|++|+|  ++|.|.....    .
T Consensus        66 ~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~  145 (185)
T 1io0_A           66 YVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIAN  145 (185)
T ss_dssp             SCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHH
T ss_pred             CcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHH
Confidence            5556666666654421    112333456666777777665521    234455566777777  6676663211    1


Q ss_pred             cccCcccceeeeccCCCcc
Q psy15407        283 AFADLHAITHLAIGGNPLY  301 (604)
Q Consensus       283 ~f~~l~~L~~L~L~~Npl~  301 (604)
                      .+...++|++|+|++|.+.
T Consensus       146 ~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          146 MLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HHHHCSSCCEEECCCSSHH
T ss_pred             HHHhCCCcCEEeccCCCCC
Confidence            2334456777777777653

>1a3p_A Epidermal growth factor; disulfide connectivities, EGF-like domain, repeat; HET: ABA; NMR {Mus musculus} SCOP: g.3.11.1

Probab=98.11  E-value=2.4e-06  Score=57.99  Aligned_cols=35  Identities=29%  Similarity=0.799  Sum_probs=30.5

Q ss_pred             CCCCC---CCCCCCEEe--eCCCCeEeeeCCCCccCCCCc
Q psy15407        516 DCVNH---MCQNGGTCV--DGINDYTCKCEGDFVGKFCEI  550 (604)
Q Consensus       516 ~C~~~---~C~~~~~C~--~~~~~y~C~C~~G~~G~~C~~  550 (604)
                      +|...   ||.++|+|+  +..++|+|.|++||+|.+|+.
T Consensus         2 ~C~~~~~~pC~ngg~C~~~~~~~~~~C~C~~G~~G~~Ce~   41 (45)
T 1a3p_A            2 GXPSSYDGYCLNGGVXMHIESLDSYTCNCVIGYSGDRCQT   41 (45)
T ss_dssp             CCTTCCSSCCSSSCEEEECTTTSSEEEECCTTEETTTTCE
T ss_pred             CcccCCCCCCCCCCEEEeecCCCCEEEEcCCCCcCCcCCc
Confidence            45555   999999998  678899999999999999985

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=98.10  E-value=9.5e-06  Score=83.98  Aligned_cols=140  Identities=16%  Similarity=0.224  Sum_probs=95.6

Q ss_pred             CcceeecCCCccCCCCCCcEEeCCCCcceecCCCcCCCcccCCcCCCCCCCCCccccccEEEccCCccccccccccceee
Q psy15407        125 NEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDNYCPPKCTCTVRVLFYDGRAGECYIAVELFSSR  204 (604)
Q Consensus       125 N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~  204 (604)
                      +.++.|.. .+|.+..+|+.+.|.++ +..|...+|.+..+|+.+.+...       +..                    
T Consensus       251 ~~v~~i~~-~aF~~c~~L~~i~lp~~-~~~I~~~aF~~c~~L~~i~l~~~-------i~~--------------------  301 (394)
T 4gt6_A          251 NGVARIET-HAFDSCAYLASVKMPDS-VVSIGTGAFMNCPALQDIEFSSR-------ITE--------------------  301 (394)
T ss_dssp             TTEEEECT-TTTTTCSSCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-------CCE--------------------
T ss_pred             CcceEccc-ceeeecccccEEecccc-cceecCcccccccccccccCCCc-------ccc--------------------
Confidence            45677765 45999999999999754 55788899998887776655421       000                    


Q ss_pred             eeeccccCCccccceeecCCCCceeeccCCCCCCCCCCCeEEecCCcceeeeccccCCCCcccEEEccCCccccCCcccc
Q psy15407        205 IRVSYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAF  284 (604)
Q Consensus       205 ~~~~~~~~~~~~~L~~L~Ls~N~i~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f  284 (604)
                      +....|.+  -.+|+.++|..+ ++.|...+|.++.+|+.|.|..+ ++.|...+|.+..+|+.++|.+|....   ..|
T Consensus       302 I~~~aF~~--c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~---~~~  374 (394)
T 4gt6_A          302 LPESVFAG--CISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW---NAI  374 (394)
T ss_dssp             ECTTTTTT--CTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH---HTC
T ss_pred             cCceeecC--CCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh---hhh
Confidence            00011111  137888888754 89999999999999999999754 999999999999999999999987542   346


Q ss_pred             cCcccceeeeccCCCc
Q psy15407        285 ADLHAITHLAIGGNPL  300 (604)
Q Consensus       285 ~~l~~L~~L~L~~Npl  300 (604)
                      ....+|+.|.+..|.+
T Consensus       375 ~~~~~L~~i~i~~~~~  390 (394)
T 4gt6_A          375 STDSGLQNLPVAPGSI  390 (394)
T ss_dssp             BCCCCC----------
T ss_pred             hccCCCCEEEeCCCCE
Confidence            6667788888876643

>1a3p_A Epidermal growth factor; disulfide connectivities, EGF-like domain, repeat; HET: ABA; NMR {Mus musculus} SCOP: g.3.11.1

Probab=98.09  E-value=3e-06  Score=57.53  Aligned_cols=33  Identities=33%  Similarity=0.683  Sum_probs=21.4

Q ss_pred             CCCCCCeeec-CCCCceeeeCCCCCcCCCCcccC
Q psy15407        365 PCTNQGVCEP-LPERQYQCRCTPGYHGQHCEFMI  397 (604)
Q Consensus       365 ~C~~~g~C~~-~~~~~~~C~C~~g~~G~~c~~~~  397 (604)
                      ||.|+|+|.. ...+.|+|.|++||+|..|+.++
T Consensus        10 pC~ngg~C~~~~~~~~~~C~C~~G~~G~~Ce~~~   43 (45)
T 1a3p_A           10 YCLNGGVXMHIESLDSYTCNCVIGYSGDRCQTRD   43 (45)
T ss_dssp             CCSSSCEEEECTTTSSEEEECCTTEETTTTCEEC
T ss_pred             CCCCCCEEEeecCCCCEEEEcCCCCcCCcCCccc
Confidence            7777777762 23356777777777777776544

>1k36_A Epiregulin; EGF-like fold, hormone/growth factor complex; NMR {Homo sapiens} SCOP: g.3.11.1 PDB: 1k37_A

Probab=98.07  E-value=2.1e-06  Score=58.34  Aligned_cols=37  Identities=27%  Similarity=0.782  Sum_probs=31.0

Q ss_pred             cCCCCCC---CCCCCCCEEeeCC--CCeEeeeCCCCccCCCCc
Q psy15407        513 NVDDCVN---HMCQNGGTCVDGI--NDYTCKCEGDFVGKFCEI  550 (604)
Q Consensus       513 ~~~~C~~---~~C~~~~~C~~~~--~~y~C~C~~G~~G~~C~~  550 (604)
                      ++++|..   +||.+ |+|++..  ++|.|.|++||+|.+||.
T Consensus         2 ~i~~C~~~~~~pC~n-G~C~~~~~~~~~~C~C~~GytG~~Ce~   43 (46)
T 1k36_A            2 SITKCSSDMNGYCLH-GQCIYLVDMSQNYCRCEVGYTGVRCEH   43 (46)
T ss_dssp             CEECCCTTCCSSCSS-EEEEEETTTTEEEEEECTTCSSTTSCC
T ss_pred             ccccCCCCCCCCCCC-CEeeccCCCCCEEEECCCCCccCCCCc
Confidence            4567876   89999 8998744  689999999999999985

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=97.98  E-value=4e-07  Score=83.60  Aligned_cols=62  Identities=13%  Similarity=-0.007  Sum_probs=48.1

Q ss_pred             cceeecCCCCceeecc----CCCCCCCCCCCeEEe--cCCcceeee----ccccCCCCcccEEEccCCcccc
Q psy15407        217 STMYRDLSNNQIGFLS----NFTFSPLSKLSQLIL--SYNKLQCID----RDALAGLKSLRIISLHGNDISM  278 (604)
Q Consensus       217 ~L~~L~Ls~N~i~~l~----~~~f~~l~~L~~L~L--s~N~l~~i~----~~~f~~l~~L~~L~Ls~N~l~~  278 (604)
                      +|++|+|++|.|....    ...+...++|++|+|  ++|.|....    ..++...++|+.|+|++|.|..
T Consensus        94 ~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~  165 (185)
T 1io0_A           94 TLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGP  165 (185)
T ss_dssp             SCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHH
T ss_pred             CcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCCh
Confidence            7889999999987632    335666788999999  889987642    2345556899999999999863

>1hae_A Heregulin-alpha; growth factor; NMR {Homo sapiens} SCOP: g.3.11.1 PDB: 1haf_A 1hre_A 1hrf_A

Probab=97.93  E-value=2.8e-06  Score=62.47  Aligned_cols=42  Identities=29%  Similarity=0.666  Sum_probs=27.1

Q ss_pred             CcCCCCCCCCCcEEEe-----CCCCeEEecCCCCCCCCcccCCCcCC
Q psy15407        437 DDCLSHKCENNATCVD-----LIQAYECRCAPGFQGEFCQTKTPFCA  478 (604)
Q Consensus       437 ~~C~~~~C~~~~~C~~-----~~~~~~C~C~~g~~g~~C~~~~~~C~  478 (604)
                      ++|...||.++|+|++     ..++|.|.|++||+|..|+.++++|.
T Consensus         7 ~~C~~~pC~ngG~C~~~~~~~~~~~y~C~C~~Gf~G~~Ce~~i~~~~   53 (63)
T 1hae_A            7 AEKEKTFCVNGGECFMVKDLSNPSRYLCKCQPGFTGARCTENVPMKV   53 (63)
T ss_dssp             CHHHHTTSCTTCEEEEEESSSSSCCEEEECCTTEESTTSCEECCSSC
T ss_pred             CCCCCCcCCCCcEEecCCccCCCCCEEEECCCCCcCCccCcCcCccc
Confidence            4555667777777765     45667777777777777765555443

>2k2s_B Micronemal protein 6; microneme protein complex, cell adhesion, cytoplasmic vesicl lectin, virulence, EGF-like domain, membrane; NMR {Toxoplasma gondii} PDB: 2k2t_A

Probab=97.89  E-value=2.7e-06  Score=61.40  Aligned_cols=37  Identities=27%  Similarity=0.621  Sum_probs=29.2

Q ss_pred             CCCcCCCCCCCCC--cEEEeCCCCeEEecCCCCC-CCCcc
Q psy15407        435 NIDDCLSHKCENN--ATCVDLIQAYECRCAPGFQ-GEFCQ  471 (604)
Q Consensus       435 ~~~~C~~~~C~~~--~~C~~~~~~~~C~C~~g~~-g~~C~  471 (604)
                      ++++|.+.||.++  |+|++..++|.|.|++||+ |..|+
T Consensus        10 ~~d~C~snPC~nga~gtC~~~~g~y~C~C~~Gy~~G~~C~   49 (61)
T 2k2s_B           10 TPAACSSNPCGPEAAGTCKETNSGYICRCNQGYRISLDGT   49 (61)
T ss_dssp             SCCHHHHCSSCSSSCCEEEECSSEEEEECCTTEEEEECSS
T ss_pred             CCCcCcCCCCcCCCccccccCCCceEeECCCCCccCCCCC
Confidence            5677777888877  7888888888888888888 87775

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=97.87  E-value=2.3e-06  Score=87.18  Aligned_cols=63  Identities=11%  Similarity=0.088  Sum_probs=34.7

Q ss_pred             CCCCCCeEEecCCcceeeecccc---CCCCcccEEEccCCccccCCc----ccccCcccceeeeccCCCc
Q psy15407        238 PLSKLSQLILSYNKLQCIDRDAL---AGLKSLRIISLHGNDISMIPE----GAFADLHAITHLAIGGNPL  300 (604)
Q Consensus       238 ~l~~L~~L~Ls~N~l~~i~~~~f---~~l~~L~~L~Ls~N~l~~i~~----~~f~~l~~L~~L~L~~Npl  300 (604)
                      .+++|+.|+|++|.|......++   ..+++|++|+|+.|.|+..-.    ..+..+++|+.|+|+.|.+
T Consensus       250 ~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i  319 (362)
T 2ra8_A          250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYL  319 (362)
T ss_dssp             TCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBC
T ss_pred             CCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcC
Confidence            35677777777766653211111   235667777777776664211    1123456677777776654

>3ca7_A Protein spitz; argos, EGF, developmental protein, differentiation, EGF-like domain, endoplasmic reticulum, glycoprotein, golgi apparatus; 1.50A {Drosophila melanogaster} PDB: 3c9a_C 3ltg_D

Probab=97.83  E-value=1.5e-06  Score=61.11  Aligned_cols=29  Identities=41%  Similarity=0.997  Sum_probs=14.9

Q ss_pred             CCCCCcEEEe----CCCCeEEecCCCCCCCCcc
Q psy15407        443 KCENNATCVD----LIQAYECRCAPGFQGEFCQ  471 (604)
Q Consensus       443 ~C~~~~~C~~----~~~~~~C~C~~g~~g~~C~  471 (604)
                      ||.++|+|++    ..++|.|.|++||+|..|+
T Consensus        15 pC~NGGtC~~~~~~~~~~y~C~C~~Gf~G~~Ce   47 (52)
T 3ca7_A           15 YCLNDAHCFAVKIADLPVYSCECAIGFMGQRCE   47 (52)
T ss_dssp             TSCTTCEEEEEEETTEEEEEEECCTTEESTTSC
T ss_pred             cCCCCCEEecCccCCCCCEEEECCCCCcCCCCc
Confidence            4555555553    2334555555555555554

>2fd6_A Urokinase-type plasminogen activator; UPAR, ATF, ATN-615 antibody, FAB, ternary complex, immune SY hydrolase; HET: PGE NAG FUC NDG PG4; 1.90A {Homo sapiens} SCOP: g.3.11.1 g.14.1.1 PDB: 3bt2_A* 3bt1_A* 3u73_A* 1urk_A* 3laq_A* 1kdu_A

Probab=97.68  E-value=3.4e-05  Score=64.93  Aligned_cols=59  Identities=36%  Similarity=0.740  Sum_probs=42.7

Q ss_pred             CCCCCCEEeeCC--CCe-EeeeCCCCccCCCCcCcccccCCCCCCCCCCCCCCCCceeCCCCCCCeeeecCCCCcCCCCC
Q psy15407        521 MCQNGGTCVDGI--NDY-TCKCEGDFVGKFCEIAPFVAMMYPQTSPCQHHDCKNGICFQPQGSNDYLCKCAPGYSGKESL  597 (604)
Q Consensus       521 ~C~~~~~C~~~~--~~y-~C~C~~G~~G~~C~~~~~~~~~~~~~~~C~~~~C~~g~C~~~~g~~~~~C~C~~G~~G~~C~  597 (604)
                      ||.++|+|++..  .+| +|.|++||+|..|++..         +    ..     |....| .+|.+.+..+++|..|+
T Consensus         2 pC~nggtC~~~~~~~~~~~C~Cp~g~~G~~Ce~~~---------~----~~-----C~~g~G-~~YrG~~~~t~sG~~Cq   62 (122)
T 2fd6_A            2 DCLNGGTCVSNKYFSNIHWCNCPKKFGGQHCEIDK---------S----KT-----CYEGNG-HFYRGKASTDTMGRPCL   62 (122)
T ss_dssp             CCCSSCEEEECTTTTTCEEEECCTTEESTTSCEES---------S----CC-----SBCSSC-TTCCSCCCBBTTSCBBC
T ss_pred             CCCCcCCcCCCcccCCCCCccCCCCCCCccccccC---------c----CC-----Cccccc-ccceeeccccccCCccc
Confidence            688889998874  455 89999999999998631         1    12     322233 46888999999998887


Q ss_pred             C
Q psy15407        598 L  598 (604)
Q Consensus       598 ~  598 (604)
                      .
T Consensus        63 ~   63 (122)
T 2fd6_A           63 P   63 (122)
T ss_dssp             C
T ss_pred             C
Confidence            4

>1nql_B Epidermal growth factor; cell surface receptor, tyrosine kinase, glycoprotein, endoso growth factor, auto-inhibition; HET: NAG BMA; 2.80A {Homo sapiens} SCOP: g.3.11.1 PDB: 1ivo_C* 2kv4_A 1jl9_A 1p9j_A 3njp_C*

Probab=97.65  E-value=2e-05  Score=55.34  Aligned_cols=33  Identities=24%  Similarity=0.929  Sum_probs=29.2

Q ss_pred             CCCCCCCCEEe--eCCCCeEeeeCCCCccCCCCcC
Q psy15407        519 NHMCQNGGTCV--DGINDYTCKCEGDFVGKFCEIA  551 (604)
Q Consensus       519 ~~~C~~~~~C~--~~~~~y~C~C~~G~~G~~C~~~  551 (604)
                      .+||.++|+|+  +..++|+|.|++||+|.+|+..
T Consensus        11 ~~pC~nGG~C~~~~~~~~~~C~C~~GytG~~Ce~~   45 (53)
T 1nql_B           11 DGYCLHDGVCMYIEALDKYACNCVVGYIGERCQYR   45 (53)
T ss_dssp             CCEECTTCEEEEETTTTEEEEEECTTEESTTSCEE
T ss_pred             CCCCCCCeEEeeecCCCCEEEecCCCCcCCCCCcC
Confidence            46899999998  6788999999999999999864

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=97.62  E-value=4.7e-06  Score=84.86  Aligned_cols=160  Identities=13%  Similarity=0.050  Sum_probs=93.3

Q ss_pred             CccCcEEecCCCcceeecCCCccCCCCCCcEEeCCCCcceecCCCcC--CCcccCCcCCCCCCCCCccccccEEEccCCc
Q psy15407        114 PLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAF--EGENDQGCLGDNYCPPKCTCTVRVLFYDGRA  191 (604)
Q Consensus       114 ~~~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f--~~l~~L~~L~l~~~~~~~~~~l~~l~~~~~~  191 (604)
                      ++.++.|.|++|.-..+++   +. +++|++|+|..+.|..-....+  ..+++|+.|+|+.....         .....
T Consensus       171 ~P~L~~L~L~g~~~l~l~~---~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~---------~~~~~  237 (362)
T 2ra8_A          171 MPLLNNLKIKGTNNLSIGK---KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVED---------YGFDG  237 (362)
T ss_dssp             CTTCCEEEEECCBTCBCCS---CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGG---------GTCCS
T ss_pred             CCCCcEEEEeCCCCceecc---cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccc---------cccch
Confidence            3478999998874223432   43 8899999998887754222222  25667776655321000         00000


Q ss_pred             cccccccccceeeeeec-cccCCccccceeecCCCCceeeccCCCC---CCCCCCCeEEecCCcceeeec----cccCCC
Q psy15407        192 GECYIAVELFSSRIRVS-YYVGNYPVSTMYRDLSNNQIGFLSNFTF---SPLSKLSQLILSYNKLQCIDR----DALAGL  263 (604)
Q Consensus       192 ~~~~~~~~~~~~~~~~~-~~~~~~~~~L~~L~Ls~N~i~~l~~~~f---~~l~~L~~L~Ls~N~l~~i~~----~~f~~l  263 (604)
                      .           ...+. .+.....++|++|+|++|.|.......+   ..+++|++|+|+.|.|.....    ..+..+
T Consensus       238 ~-----------~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l  306 (362)
T 2ra8_A          238 D-----------MNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKI  306 (362)
T ss_dssp             C-----------GGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHH
T ss_pred             h-----------HHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccC
Confidence            0           00000 0111112389999999998864221111   357899999999999987432    223457


Q ss_pred             CcccEEEccCCccccCCcccccC-cccceeeeccCCC
Q psy15407        264 KSLRIISLHGNDISMIPEGAFAD-LHAITHLAIGGNP  299 (604)
Q Consensus       264 ~~L~~L~Ls~N~l~~i~~~~f~~-l~~L~~L~L~~Np  299 (604)
                      ++|+.|+|++|.|+..-...+.. +  ...++++.|+
T Consensus       307 ~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~~  341 (362)
T 2ra8_A          307 KHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDSQ  341 (362)
T ss_dssp             TTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred             CcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence            89999999999887433322332 2  3567888877

>1nql_B Epidermal growth factor; cell surface receptor, tyrosine kinase, glycoprotein, endoso growth factor, auto-inhibition; HET: NAG BMA; 2.80A {Homo sapiens} SCOP: g.3.11.1 PDB: 1ivo_C* 2kv4_A 1jl9_A 1p9j_A 3njp_C*

Probab=97.55  E-value=3.9e-05  Score=53.82  Aligned_cols=40  Identities=30%  Similarity=0.814  Sum_probs=26.1

Q ss_pred             cCCCCcCCCCCCCCeeec-CCCCceeeeCCCCCcCCCCccc
Q psy15407        357 KCNACYKSPCTNQGVCEP-LPERQYQCRCTPGYHGQHCEFM  396 (604)
Q Consensus       357 ~c~~C~~~~C~~~g~C~~-~~~~~~~C~C~~g~~G~~c~~~  396 (604)
                      .|.+-..+||.|+|+|.. ...+.|.|.|++||+|..|+..
T Consensus         5 ~C~~~~~~pC~nGG~C~~~~~~~~~~C~C~~GytG~~Ce~~   45 (53)
T 1nql_B            5 ECPLSHDGYCLHDGVCMYIEALDKYACNCVVGYIGERCQYR   45 (53)
T ss_dssp             ECCSTTCCEECTTCEEEEETTTTEEEEEECTTEESTTSCEE
T ss_pred             ccCCCCCCCCCCCeEEeeecCCCCEEEecCCCCcCCCCCcC
Confidence            344445567777788862 2335677888888888877743

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.40  E-value=2.6e-05  Score=69.96  Aligned_cols=84  Identities=13%  Similarity=0.040  Sum_probs=66.1

Q ss_pred             cceeecCCCCceeeccCCCCCCCCCCCeEEecCCc-ceeeeccccCCC----CcccEEEccCCc-cccCCcccccCcccc
Q psy15407        217 STMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNK-LQCIDRDALAGL----KSLRIISLHGND-ISMIPEGAFADLHAI  290 (604)
Q Consensus       217 ~L~~L~Ls~N~i~~l~~~~f~~l~~L~~L~Ls~N~-l~~i~~~~f~~l----~~L~~L~Ls~N~-l~~i~~~~f~~l~~L  290 (604)
                      .|+.|||+++.|+...-..+.++++|+.|+|+++. |+.-.-..+..+    ++|++|+|+++. |+.---..+..+++|
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L  141 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL  141 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred             eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence            79999999999988776778899999999999985 665433445554    379999999974 875433446778999


Q ss_pred             eeeeccCCCc
Q psy15407        291 THLAIGGNPL  300 (604)
Q Consensus       291 ~~L~L~~Npl  300 (604)
                      ++|+|++-+-
T Consensus       142 ~~L~L~~c~~  151 (176)
T 3e4g_A          142 KYLFLSDLPG  151 (176)
T ss_dssp             CEEEEESCTT
T ss_pred             CEEECCCCCC
Confidence            9999997653

>2fd6_A Urokinase-type plasminogen activator; UPAR, ATF, ATN-615 antibody, FAB, ternary complex, immune SY hydrolase; HET: PGE NAG FUC NDG PG4; 1.90A {Homo sapiens} SCOP: g.3.11.1 g.14.1.1 PDB: 3bt2_A* 3bt1_A* 3u73_A* 1urk_A* 3laq_A* 1kdu_A

Probab=97.27  E-value=0.00019  Score=60.34  Aligned_cols=60  Identities=28%  Similarity=0.623  Sum_probs=42.8

Q ss_pred             CCCCCCceeecC--CCe-EEecCCCCcCCcCcccCCCCCCCCCCCCCEEeeCCCCeEeeeCCCCccCCCCcC
Q psy15407        483 PCRNGARCLDHF--SHY-TCECTPGFSGVNCTVNVDDCVNHMCQNGGTCVDGINDYTCKCEGDFVGKFCEIA  551 (604)
Q Consensus       483 ~C~~~~~C~~~~--~~~-~C~C~~g~~g~~c~~~~~~C~~~~C~~~~~C~~~~~~y~C~C~~G~~G~~C~~~  551 (604)
                      +|.++|+|++..  .+| +|.|++||+|..|+++++    .+|..+     ...+|++.+..++.|..|+.-
T Consensus         2 pC~nggtC~~~~~~~~~~~C~Cp~g~~G~~Ce~~~~----~~C~~g-----~G~~YrG~~~~t~sG~~Cq~W   64 (122)
T 2fd6_A            2 DCLNGGTCVSNKYFSNIHWCNCPKKFGGQHCEIDKS----KTCYEG-----NGHFYRGKASTDTMGRPCLPW   64 (122)
T ss_dssp             CCCSSCEEEECTTTTTCEEEECCTTEESTTSCEESS----CCSBCS-----SCTTCCSCCCBBTTSCBBCCT
T ss_pred             CCCCcCCcCCCcccCCCCCccCCCCCCCccccccCc----CCCccc-----ccccceeeccccccCCcccCc
Confidence            578888888763  455 889999999988886654    134321     124688888888888888753

>3ltf_D Protein spitz; receptor-ligand complex ectodomain cysteine rich domain EGF ATP-binding, kinase, nucleotide-binding, receptor; HET: NAG MAN; 3.20A {Drosophila melanogaster}

Probab=97.27  E-value=0.00015  Score=51.84  Aligned_cols=31  Identities=32%  Similarity=0.877  Sum_probs=25.5

Q ss_pred             CCCCCCEEe--e--CCCCeEeeeCCCCccCCCCcC
Q psy15407        521 MCQNGGTCV--D--GINDYTCKCEGDFVGKFCEIA  551 (604)
Q Consensus       521 ~C~~~~~C~--~--~~~~y~C~C~~G~~G~~C~~~  551 (604)
                      +|.++|+|+  +  ..++|.|.|++||+|.+||..
T Consensus        15 pC~NGGtC~~~~~~~~~~~~C~C~~Gf~G~~Ce~~   49 (58)
T 3ltf_D           15 YCLNDAHCFAVKIADLPVYSCECAIGFMGQRCEYK   49 (58)
T ss_dssp             TSCSSCEEEEEEETTEEEEEEEECTTEESSSSCEE
T ss_pred             cCCCCCEEeCCccCCCCCEEeECCCCCccCCCccc
Confidence            788999997  3  456789999999999999863

>3e50_C Protransforming growth factor alpha; IDE, TGF-alpha, cytoplasm, hydrolase, metal-binding, metalloprotease, polymorphism, protease, zinc; 2.30A {Homo sapiens} SCOP: g.3.11.1 PDB: 1yuf_A 1yug_A 2tgf_A 1mox_C 3tgf_A 4tgf_A

Probab=97.08  E-value=0.00032  Score=48.03  Aligned_cols=35  Identities=23%  Similarity=0.461  Sum_probs=28.6

Q ss_pred             CCCCCCCceeCCCCCCCeeeecCCCCcCCCCCCCc
Q psy15407        566 HHDCKNGICFQPQGSNDYLCKCAPGYSGKESLLQQ  600 (604)
Q Consensus       566 ~~~C~~g~C~~~~g~~~~~C~C~~G~~G~~C~~~~  600 (604)
                      ...|.||.|......+.+.|.|++||+|++||..+
T Consensus        13 ~~yC~nG~C~~~~~~~~~~C~C~~gy~G~RCe~~d   47 (50)
T 3e50_C           13 TQFCFHGTCRFLVQEDKPACVCHSGYVGARCEHAD   47 (50)
T ss_pred             cCcccCCEEeeccCCCCeEEECCCCCcccCCCcee
Confidence            45688889986555578999999999999999764

>1xdt_R Hbegf, heparin-binding epidermal growth factor; complex (toxin-growth factor), diphtheria toxin, receptor, H binding epidermal growth factor; 2.65A {Homo sapiens} SCOP: g.3.11.1

Probab=97.03  E-value=0.00018  Score=54.13  Aligned_cols=39  Identities=28%  Similarity=0.592  Sum_probs=29.8

Q ss_pred             CCCCC---CCCCCCCceeCCCCCCCeeeecCCCCcCCCCCCC
Q psy15407        561 TSPCQ---HHDCKNGICFQPQGSNDYLCKCAPGYSGKESLLQ  599 (604)
Q Consensus       561 ~~~C~---~~~C~~g~C~~~~g~~~~~C~C~~G~~G~~C~~~  599 (604)
                      .++|.   .+.|.||.|....+.+.+.|.|.+||+|.+||..
T Consensus        37 ~~pC~~~~~~yClnG~C~~i~~~~~~~C~C~~GYtG~RCE~l   78 (79)
T 1xdt_R           37 RDPCLRKYKDFCIHGECKYVKELRAPSCICHPGYHGERCHGL   78 (79)
T ss_dssp             --CTTTTTTTCCSSEEECCBGGGTBCCEEECTTEESTTCCEE
T ss_pred             CCCCCccccCcCCCCEeeeecCCCCeEEEcCCCccccccccc
Confidence            45666   6789999996544446789999999999999853

>3ltf_D Protein spitz; receptor-ligand complex ectodomain cysteine rich domain EGF ATP-binding, kinase, nucleotide-binding, receptor; HET: NAG MAN; 3.20A {Drosophila melanogaster}

Probab=97.01  E-value=0.00013  Score=52.23  Aligned_cols=34  Identities=29%  Similarity=0.689  Sum_probs=26.2

Q ss_pred             CCCCCc-eeCCC--CCCCeeeecCCCCcCCCCCCCcc
Q psy15407        568 DCKNGI-CFQPQ--GSNDYLCKCAPGYSGKESLLQQT  601 (604)
Q Consensus       568 ~C~~g~-C~~~~--g~~~~~C~C~~G~~G~~C~~~~~  601 (604)
                      .|.||+ |+...  +.+.|.|.|++||+|++||..+.
T Consensus        15 pC~NGGtC~~~~~~~~~~~~C~C~~Gf~G~~Ce~~~~   51 (58)
T 3ltf_D           15 YCLNDAHCFAVKIADLPVYSCECAIGFMGQRCEYKEI   51 (58)
T ss_dssp             TSCSSCEEEEEEETTEEEEEEEECTTEESSSSCEECC
T ss_pred             cCCCCCEEeCCccCCCCCEEeECCCCCccCCCcccCC
Confidence            577876 98421  22679999999999999997654

>1g1s_A P-selectin; selectin, lectin, EGF, sulphated, SLEX, immune system, membr protein; HET: TYS SIA GAL NAG FUC NGA; 1.90A {Homo sapiens} SCOP: d.169.1.1 g.3.11.1 PDB: 1g1r_A* 1g1q_A* 1fsb_A

Probab=96.99  E-value=0.00029  Score=62.69  Aligned_cols=36  Identities=36%  Similarity=0.933  Sum_probs=32.1

Q ss_pred             CCCCCCCCCCCCEEeeCCCCeEeeeCCCCccCCCCc
Q psy15407        515 DDCVNHMCQNGGTCVDGINDYTCKCEGDFVGKFCEI  550 (604)
Q Consensus       515 ~~C~~~~C~~~~~C~~~~~~y~C~C~~G~~G~~C~~  550 (604)
                      ++|...+|.++|+|++..++|+|.|++||.|..||.
T Consensus       120 ~~c~~~~C~~~g~C~~~~~~~~c~C~~g~~G~~Ce~  155 (162)
T 1g1s_A          120 ASCQDMSCSKQGECLETIGNYTCSCYPGFYGPECEY  155 (162)
T ss_dssp             CCCCTTGGGGSEEEEECSSSEEEEECTTEESTTSCE
T ss_pred             CCCcCCCCCCCCEEecCCCCceEeCCCCCcCccccc
Confidence            346667899999999999999999999999999996

>2rnl_A Amphiregulin; AR, colorectum cell-derived growth factor, EGF-like domain, CRDGF, cytokine, glycoprotein, membrane, polymorphism, transmembrane; NMR {Homo sapiens}

Probab=96.95  E-value=0.00047  Score=47.24  Aligned_cols=38  Identities=26%  Similarity=0.579  Sum_probs=29.2

Q ss_pred             CCCC---CCCCCCCceeCCCCCCCeeeecCCCCcCCCCCCC
Q psy15407        562 SPCQ---HHDCKNGICFQPQGSNDYLCKCAPGYSGKESLLQ  599 (604)
Q Consensus       562 ~~C~---~~~C~~g~C~~~~g~~~~~C~C~~G~~G~~C~~~  599 (604)
                      .+|.   ...|.||.|....+.+.+.|.|++||+|.+||..
T Consensus        10 ~~C~~~~~~yC~nG~C~~i~~~~~~~C~C~~gy~G~RCe~k   50 (50)
T 2rnl_A           10 NPCNAEFQNFCIHGECKYIEHLEAVTCKCQQEYFGERCGEK   50 (50)
T ss_dssp             CTTTTTGGGTCSSSEEEEETTTTEEEEECCSSCCSSSCCCC
T ss_pred             cccCchhhCcCCCCEEEEecCCCCeeEECCCCccccccccC
Confidence            4555   3568898997444447899999999999999863

>1apq_A Complement protease C1R; EGF, calcium binding, serine protease; NMR {Homo sapiens} SCOP: g.3.11.1

Probab=96.89  E-value=0.00063  Score=47.70  Aligned_cols=32  Identities=25%  Similarity=0.755  Sum_probs=26.1

Q ss_pred             cCCCCCC----------CCCCCCCEEeeCCCCeEeeeCCCCccC
Q psy15407        513 NVDDCVN----------HMCQNGGTCVDGINDYTCKCEGDFVGK  546 (604)
Q Consensus       513 ~~~~C~~----------~~C~~~~~C~~~~~~y~C~C~~G~~G~  546 (604)
                      ++++|..          ++|.  +.|++++|+|+|.|++||++.
T Consensus         3 DidEC~~~~~~~~~~~~~~C~--~~C~n~~Gsy~C~C~~Gy~~~   44 (53)
T 1apq_A            3 DLDECASRSKSGEEDPQPQCQ--HLCHNYVGGYFCSCRPGYELQ   44 (53)
T ss_dssp             SCCTTTCSTTTCCCSSSCTTS--SEEEEETTEEEEECSTTCEEC
T ss_pred             ccccccCcccccccccCCCCC--CEeECCCCCeEEECCCCCeEC
Confidence            5677764          5786  489999999999999999854

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=96.81  E-value=0.00018  Score=64.47  Aligned_cols=34  Identities=21%  Similarity=0.114  Sum_probs=19.8

Q ss_pred             cCcEEecCCCcceeecCCCccCCCCCCcEEeCCCC
Q psy15407        116 YTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRN  150 (604)
Q Consensus       116 ~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N  150 (604)
                      .+++|+|+++.|+...-. .+.++++|++|+|+++
T Consensus        62 ~L~~LDLs~~~Itd~GL~-~L~~~~~L~~L~L~~C   95 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFD-HMEGLQYVEKIRLCKC   95 (176)
T ss_dssp             CEEEEEEESCCCCGGGGG-GGTTCSCCCEEEEESC
T ss_pred             eEeEEeCcCCCccHHHHH-HhcCCCCCCEEEeCCC
Confidence            456667776666543322 2456666666666665

>1iox_A Betacellulin; EGF-like fold, hormone/growth factor complex; NMR {Homo sapiens} SCOP: g.3.11.1 PDB: 1ip0_A

Probab=96.81  E-value=0.00045  Score=47.49  Aligned_cols=35  Identities=26%  Similarity=0.487  Sum_probs=27.7

Q ss_pred             CCCCCCCceeCCCCCCCeeeecCCCCcCCCCCCCc
Q psy15407        566 HHDCKNGICFQPQGSNDYLCKCAPGYSGKESLLQQ  600 (604)
Q Consensus       566 ~~~C~~g~C~~~~g~~~~~C~C~~G~~G~~C~~~~  600 (604)
                      ...|.||.|......+.+.|.|++||+|++||..+
T Consensus        13 ~~yC~nG~C~~~~~~~~~~C~C~~gy~G~RCe~~~   47 (50)
T 1iox_A           13 KHYCIKGRCRFVVAEQTPSCVCDEGYIGARCERVD   47 (50)
T ss_dssp             TTSCTTCCEEEETTTTEEEECCCTTEETTTTCEEC
T ss_pred             cCcccCCEEEeEcCCCCeEEECCCCcccCCCCeec
Confidence            45688888964444478999999999999999764

>2i9a_A Urokinase-type plasminogen activator; growth factor-like domain, kringle domain, hydrolase; 1.90A {Homo sapiens} SCOP: g.3.11.1 g.14.1.1 PDB: 2i9b_A*

Probab=96.77  E-value=0.0017  Score=56.09  Aligned_cols=58  Identities=36%  Similarity=0.771  Sum_probs=32.3

Q ss_pred             CCCCCCEEeeC--CCCe-EeeeCCCCccCCCCcCcccccCCCCCCCCCCCCCCCCceeCCCCCCCeeeecCCCCcCCCCC
Q psy15407        521 MCQNGGTCVDG--INDY-TCKCEGDFVGKFCEIAPFVAMMYPQTSPCQHHDCKNGICFQPQGSNDYLCKCAPGYSGKESL  597 (604)
Q Consensus       521 ~C~~~~~C~~~--~~~y-~C~C~~G~~G~~C~~~~~~~~~~~~~~~C~~~~C~~g~C~~~~g~~~~~C~C~~G~~G~~C~  597 (604)
                      ||.++|+|+..  ...| +|.|++||.|.+|++..         +         ..|....| .+|.......++|..|+
T Consensus        14 pC~NGGtC~~~~~~s~~~~C~Cp~g~~G~~Cei~~---------~---------~~C~~g~G-~~YrG~~s~T~sG~~Cq   74 (145)
T 2i9a_A           14 DCLNGGTCVSNKYFSNIHWCNCPKKFGGQHCEIDK---------S---------KTCYEGNG-HFYRGKASTDTMGRPCL   74 (145)
T ss_dssp             CCCTTCEEEECSSSTTCEEEECCTTEESTTSCEES---------S---------CCEECTTC-TTCCSCCCBBTTSCBCC
T ss_pred             CCCCCCCcCCCccccCCccccCCCCCCCCceeccc---------c---------ccCCCCCc-cccccceecCCcCCccc
Confidence            67777777654  2344 67777777777776421         0         01333333 35666666666666664

>1ob1_C Major merozoite surface protein; immune system, immunoglobulin/complex, immunoglobulin, antib fragment, MSP1-19, EGF-like domain; 2.90A {Plasmodium falciparum} SCOP: g.3.11.4 g.3.11.4 PDB: 1cej_A 2flg_A

Probab=96.71  E-value=0.0019  Score=50.59  Aligned_cols=68  Identities=29%  Similarity=0.730  Sum_probs=40.2

Q ss_pred             CCCCCCCCCcEEEe-CCCCeEEecCCCCCC--CCcccCC-CcCCCCCCCCCCCCceeecC-----CCeEEecCCCCc
Q psy15407        439 CLSHKCENNATCVD-LIQAYECRCAPGFQG--EFCQTKT-PFCAGEYNPCRNGARCLDHF-----SHYTCECTPGFS  506 (604)
Q Consensus       439 C~~~~C~~~~~C~~-~~~~~~C~C~~g~~g--~~C~~~~-~~C~~~~~~C~~~~~C~~~~-----~~~~C~C~~g~~  506 (604)
                      |....|..++.|.. ..+...|+|.+||.|  ..|.... ..|......|..++.|....     +...|.|.+||.
T Consensus         7 C~~~~C~~NA~C~r~~~g~e~C~C~~gy~gdg~~Cv~~~~~sC~~nNGGCd~nA~C~~~~~~~~~~ki~C~C~~g~~   83 (99)
T 1ob1_C            7 CVKKQCPQNSGCFRHLDEREECKCLLNYKQEGDKCVENPNPTCNENNGGCDADAKCTEEDSGSNGKKITCECTKPDS   83 (99)
T ss_dssp             CCSCCCCTTEEEECCTTSCCEEEECTTEEEETTEEEECSCCCSTTGGGGCCTTEEEECCSCSSSSCCCEEEECSTTC
T ss_pred             eccCCCCCCCCeEEcCCCCEEEEecCCeecCCCeEeeCCCCChhhcCCCcCCCceeEecCCcccCCceEeEeCCCCc
Confidence            33445667777876 466677888888874  3454332 45554445566666665443     345666666653

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=96.62  E-value=0.00093  Score=61.00  Aligned_cols=83  Identities=13%  Similarity=-0.013  Sum_probs=45.8

Q ss_pred             cceeecCCCCceeeccCCC----CCCCCCCCeEEecCCcceeee----ccccCCCCcccEEEccCCccccCCc-------
Q psy15407        217 STMYRDLSNNQIGFLSNFT----FSPLSKLSQLILSYNKLQCID----RDALAGLKSLRIISLHGNDISMIPE-------  281 (604)
Q Consensus       217 ~L~~L~Ls~N~i~~l~~~~----f~~l~~L~~L~Ls~N~l~~i~----~~~f~~l~~L~~L~Ls~N~l~~i~~-------  281 (604)
                      .|+.|+|++|+|......+    +..-..|++|+|+.|.|..-.    ..++..-+.|+.|+|++|....|..       
T Consensus        71 ~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia  150 (197)
T 1pgv_A           71 HIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMM  150 (197)
T ss_dssp             CCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHH
T ss_pred             CcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHH
Confidence            5666777777766543222    223456777777777776421    2345555667777777553322221       


Q ss_pred             ccccCcccceeeeccCCC
Q psy15407        282 GAFADLHAITHLAIGGNP  299 (604)
Q Consensus       282 ~~f~~l~~L~~L~L~~Np  299 (604)
                      .++..-+.|+.|+|+.|.
T Consensus       151 ~aL~~N~tL~~L~l~~~~  168 (197)
T 1pgv_A          151 MAIEENESLLRVGISFAS  168 (197)
T ss_dssp             HHHHHCSSCCEEECCCCC
T ss_pred             HHHHhCCCcCeEeccCCC
Confidence            123344567777776554

>1q4g_A Prostaglandin G/H synthase 1; cyclooxygenase, non-steroidal anti-inflammatory drug, peroxi prostaglandin synthase, EGF-like domain; HET: BOG NAG NDG BMA MAN BFL HEM; 2.00A {Ovis aries} SCOP: a.93.1.2 g.3.11.1 PDB: 1diy_A* 2ayl_A* 3kk6_A* 3n8v_A* 3n8w_A* 3n8x_A* 3n8y_A* 3n8z_A* 2oyu_P* 2oye_P* 1eqg_A* 1cqe_A* 1eqh_A* 1igz_A* 1igx_A* 1fe2_A* 1pge_A* 1pgf_A* 1pgg_A* 3n8w_B* ...

Probab=96.62  E-value=0.00085  Score=71.55  Aligned_cols=38  Identities=37%  Similarity=0.961  Sum_probs=35.3

Q ss_pred             CCCCCCCCCCCCCEEee-CCCCeEeeeC-CCCccCCCCcC
Q psy15407        514 VDDCVNHMCQNGGTCVD-GINDYTCKCE-GDFVGKFCEIA  551 (604)
Q Consensus       514 ~~~C~~~~C~~~~~C~~-~~~~y~C~C~-~G~~G~~C~~~  551 (604)
                      +++|..+||.++|+|++ ..++|+|.|+ +||+|..||..
T Consensus         2 ~d~C~~~PC~ngG~C~~~~~~~y~C~C~~~G~~G~~Ce~~   41 (553)
T 1q4g_A            2 VNPCCYYPCQHQGICVRFGLDRYQCDCTRTGYSGPNCTIP   41 (553)
T ss_dssp             CCGGGGCCCCTTCEEEEETTTEEEEECTTSSEETTTTCEE
T ss_pred             CCcCCCCCCCCCCCcCCCCCCceEeeCCCCCcCCCCCCCC
Confidence            47898999999999999 8999999999 99999999974

>1g1s_A P-selectin; selectin, lectin, EGF, sulphated, SLEX, immune system, membr protein; HET: TYS SIA GAL NAG FUC NGA; 1.90A {Homo sapiens} SCOP: d.169.1.1 g.3.11.1 PDB: 1g1r_A* 1g1q_A* 1fsb_A

Probab=96.57  E-value=0.00073  Score=60.06  Aligned_cols=36  Identities=33%  Similarity=0.928  Sum_probs=23.4

Q ss_pred             cCCCCCCCCCcEEEeCCCCeEEecCCCCCCCCcccC
Q psy15407        438 DCLSHKCENNATCVDLIQAYECRCAPGFQGEFCQTK  473 (604)
Q Consensus       438 ~C~~~~C~~~~~C~~~~~~~~C~C~~g~~g~~C~~~  473 (604)
                      +|...||.++++|++..++|.|.|++||.|..|+..
T Consensus       121 ~c~~~~C~~~g~C~~~~~~~~c~C~~g~~G~~Ce~~  156 (162)
T 1g1s_A          121 SCQDMSCSKQGECLETIGNYTCSCYPGFYGPECEYV  156 (162)
T ss_dssp             CCCTTGGGGSEEEEECSSSEEEEECTTEESTTSCEE
T ss_pred             CCcCCCCCCCCEEecCCCCceEeCCCCCcCcccccC
Confidence            344556666667777666777777777777766643

>2jkh_L Factor X light chain; plasma, calcium, zymogen, secreted, protease, hydrolase, polymorphism, glycoprotein, gamma-carboxyglutamic acid; HET: BI7; 1.25A {Homo sapiens} PDB: 2bok_L* 2vvc_K* 2vvu_L* 2vvv_L* 2vwl_L* 2vwm_K* 2vwn_L* 2vwo_L* 2xbv_L* 2xbw_L* 2xbx_L* 2xby_L* 2xc0_L* 2xc4_L* 2xc5_L* 2gd4_L* 3kl6_B* 2y5f_L* 2y5g_L* 2y5h_L* ...

Probab=96.56  E-value=0.0011  Score=46.84  Aligned_cols=40  Identities=20%  Similarity=0.648  Sum_probs=25.7

Q ss_pred             CcCCCCCCCCCCCCceeecCCCeEEecCCCCc----CCcCcccCCCC
Q psy15407        475 PFCAGEYNPCRNGARCLDHFSHYTCECTPGFS----GVNCTVNVDDC  517 (604)
Q Consensus       475 ~~C~~~~~~C~~~~~C~~~~~~~~C~C~~g~~----g~~c~~~~~~C  517 (604)
                      ++|....+.|.  ..|+++.++|+|.|++||.    |..|. ++++|
T Consensus         2 dEC~~~~~~C~--~~C~nt~Gsy~C~C~~Gy~L~~d~~~C~-didec   45 (55)
T 2jkh_L            2 KLCSLDNGDCD--QFCHEEQNSVVCSCARGYTLADNGKACI-PTGPY   45 (55)
T ss_dssp             CCTTTGGGGCS--SEEEEETTEEEEECCTTEEECTTSSCEE-ESSSS
T ss_pred             ccccCCCCCcC--cEeEcCCCCeEEeCCCCCEECCCCCeec-cCccc
Confidence            34544444565  3688888888888888885    44554 55655

>2kl7_A Fibulin-4; secreted, calcium, disease mutation, disulfide bond, EGF- like domain, glycoprotein, polymorphism, structural genomics, PSI-2; NMR {Homo sapiens}

Probab=96.52  E-value=0.0016  Score=48.65  Aligned_cols=36  Identities=17%  Similarity=0.499  Sum_probs=28.9

Q ss_pred             CCCcCCCCCCCCCCCCceeecCCCeEEe-cCCCCcCC
Q psy15407        473 KTPFCAGEYNPCRNGARCLDHFSHYTCE-CTPGFSGV  508 (604)
Q Consensus       473 ~~~~C~~~~~~C~~~~~C~~~~~~~~C~-C~~g~~g~  508 (604)
                      ++++|....+.|.++++|+++.++|+|. +..||.+.
T Consensus         2 DidEC~~~~~~C~~~~~C~Nt~Gsy~C~~~~~g~~~~   38 (71)
T 2kl7_A            2 DVNECLTIPEACKGEMKCINHYGGYLCLPRSAAVIND   38 (71)
T ss_dssp             CSCCTTCCCCSCTTEEEEEETTCCEEEEETTSCCCSC
T ss_pred             ccccccCCCCCCCCCCEeECCCCCeEecccCCccccc
Confidence            6788988777898888899999999997 56677643

>1apq_A Complement protease C1R; EGF, calcium binding, serine protease; NMR {Homo sapiens} SCOP: g.3.11.1

Probab=96.38  E-value=0.002  Score=45.04  Aligned_cols=31  Identities=32%  Similarity=1.003  Sum_probs=23.0

Q ss_pred             CCCcCCC----------CCCCCCcEEEeCCCCeEEecCCCCCC
Q psy15407        435 NIDDCLS----------HKCENNATCVDLIQAYECRCAPGFQG  467 (604)
Q Consensus       435 ~~~~C~~----------~~C~~~~~C~~~~~~~~C~C~~g~~g  467 (604)
                      ++++|..          .+|.  ++|+++.|+|.|.|++||.+
T Consensus         3 DidEC~~~~~~~~~~~~~~C~--~~C~n~~Gsy~C~C~~Gy~~   43 (53)
T 1apq_A            3 DLDECASRSKSGEEDPQPQCQ--HLCHNYVGGYFCSCRPGYEL   43 (53)
T ss_dssp             SCCTTTCSTTTCCCSSSCTTS--SEEEEETTEEEEECSTTCEE
T ss_pred             ccccccCcccccccccCCCCC--CEeECCCCCeEEECCCCCeE
Confidence            5667764          4575  48888888888888888874

>3nt1_A Prostaglandin-endoperoxide synthase 2; prostaglandin H2 synthase, cyclooxygenase-2, naproxen, oxido; HET: NAG BOG NPS HEM; 1.73A {Mus musculus} PDB: 3ln1_A* 3mqe_A* 3ln0_A* 3ntb_A* 3q7d_A* 4fm5_A* 1pxx_A* 3pgh_A* 1cx2_A* 4cox_A* 5cox_A* 6cox_A* 3qh0_A* 3qmo_A* 4e1g_A* 3olu_A* 3olt_A* 3hs5_A* 3hs6_A* 3hs7_A* ...

Probab=96.37  E-value=0.0017  Score=69.31  Aligned_cols=38  Identities=34%  Similarity=0.987  Sum_probs=34.1

Q ss_pred             CCCCCCCCCCCCCEEee-CCCCeEeeeC-CCCccCCCCcC
Q psy15407        514 VDDCVNHMCQNGGTCVD-GINDYTCKCE-GDFVGKFCEIA  551 (604)
Q Consensus       514 ~~~C~~~~C~~~~~C~~-~~~~y~C~C~-~G~~G~~C~~~  551 (604)
                      +++|..+||.++|+|++ ..++|+|.|+ +||+|..|+..
T Consensus         1 vd~C~s~PC~ngG~C~~~~~~~y~C~C~~~G~~G~~Ce~~   40 (587)
T 3nt1_A            1 ANPCCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENCTTP   40 (587)
T ss_dssp             CCTTTTCCCCTTCEEEEEETTEEEEECTTSSEETTTTCEE
T ss_pred             CCCCCCCCCCCCCEeeCCCCCCeEEecCCCCccCCCCCCc
Confidence            47899999999999995 5589999999 99999999975

>1ob1_C Major merozoite surface protein; immune system, immunoglobulin/complex, immunoglobulin, antib fragment, MSP1-19, EGF-like domain; 2.90A {Plasmodium falciparum} SCOP: g.3.11.4 g.3.11.4 PDB: 1cej_A 2flg_A

Probab=96.30  E-value=0.0055  Score=48.00  Aligned_cols=67  Identities=24%  Similarity=0.594  Sum_probs=49.5

Q ss_pred             CCCCCCCCCCeeeeCCCCceEeeCCCCCcC--CCCCcCC-CcCCC--CCCCCCcEEEeCC-----CCeEEecCCCCC
Q psy15407        400 CYGNPCRNSGTCKLLEEGRFNCECAPGYTG--DRCEINI-DDCLS--HKCENNATCVDLI-----QAYECRCAPGFQ  466 (604)
Q Consensus       400 C~~~~C~~~~~C~~~~~~~~~C~C~~g~~g--~~C~~~~-~~C~~--~~C~~~~~C~~~~-----~~~~C~C~~g~~  466 (604)
                      |....|..++.|.....+...|.|.+||.|  ..|..+. +.|..  .-|..++.|+...     +...|.|.+||.
T Consensus         7 C~~~~C~~NA~C~r~~~g~e~C~C~~gy~gdg~~Cv~~~~~sC~~nNGGCd~nA~C~~~~~~~~~~ki~C~C~~g~~   83 (99)
T 1ob1_C            7 CVKKQCPQNSGCFRHLDEREECKCLLNYKQEGDKCVENPNPTCNENNGGCDADAKCTEEDSGSNGKKITCECTKPDS   83 (99)
T ss_dssp             CCSCCCCTTEEEECCTTSCCEEEECTTEEEETTEEEECSCCCSTTGGGGCCTTEEEECCSCSSSSCCCEEEECSTTC
T ss_pred             eccCCCCCCCCeEEcCCCCEEEEecCCeecCCCeEeeCCCCChhhcCCCcCCCceeEecCCcccCCceEeEeCCCCc
Confidence            444557778888776778889999999985  3565322 56765  3488999998764     578999999976

>1n1i_A Merozoite surface protein-1; MSP1, malaria, surface antigen, glycoprotein, EGF domain, cell adhesion; HET: HIS; 2.40A {Plasmodium knowlesi strain H} SCOP: g.3.11.4 g.3.11.4

Probab=96.24  E-value=0.0095  Score=46.96  Aligned_cols=68  Identities=29%  Similarity=0.563  Sum_probs=44.9

Q ss_pred             CCCCCCCCCcEEEe-CCCCeEEecCCCCC--CCCcccCCCcCCCCCCCCCCCCceeecC-CCeEEecCCCCc
Q psy15407        439 CLSHKCENNATCVD-LIQAYECRCAPGFQ--GEFCQTKTPFCAGEYNPCRNGARCLDHF-SHYTCECTPGFS  506 (604)
Q Consensus       439 C~~~~C~~~~~C~~-~~~~~~C~C~~g~~--g~~C~~~~~~C~~~~~~C~~~~~C~~~~-~~~~C~C~~g~~  506 (604)
                      |....|..++.|.. ..|..+|.|..||.  |..|......|....+.|...+.|.... ..-.|.|.++|.
T Consensus        13 C~~t~Cp~NA~C~r~~~G~e~CrCl~gY~~dg~~Cv~~Np~C~~nNGGCd~nAeC~~~~~~ki~C~C~~~~~   84 (105)
T 1n1i_A           13 CIDTNVPENAACYRYLDGTEEWRCLLGFKEVGGKCVPASITCEENNGGCAPEAECTMDDKKEVECKCTKEGS   84 (105)
T ss_dssp             CCSSCCCTTEEEEECTTSCEEEEECTTEEECSSSEEECCCCTTSGGGGSCTTSEEEECTTSCEEEECCSTTC
T ss_pred             ecCCCCCCCCCeEECCCCCEeEEEECCeeccCCEEEECCcchhhcCCCcCCCcEeEECCCCEEEeECCCCCC
Confidence            44456777788877 66777888888887  4466555333655555677777776553 456677777753

>2kl7_A Fibulin-4; secreted, calcium, disease mutation, disulfide bond, EGF- like domain, glycoprotein, polymorphism, structural genomics, PSI-2; NMR {Homo sapiens}

Probab=96.19  E-value=0.0027  Score=47.41  Aligned_cols=35  Identities=17%  Similarity=0.637  Sum_probs=28.9

Q ss_pred             cCCCcCCC--CCCCCCcEEEeCCCCeEEec-CCCCCCC
Q psy15407        434 INIDDCLS--HKCENNATCVDLIQAYECRC-APGFQGE  468 (604)
Q Consensus       434 ~~~~~C~~--~~C~~~~~C~~~~~~~~C~C-~~g~~g~  468 (604)
                      .+|+||..  .+|.++++|+|+.++|+|.+ ..||.+.
T Consensus         1 ~DidEC~~~~~~C~~~~~C~Nt~Gsy~C~~~~~g~~~~   38 (71)
T 2kl7_A            1 SDVNECLTIPEACKGEMKCINHYGGYLCLPRSAAVIND   38 (71)
T ss_dssp             CCSCCTTCCCCSCTTEEEEEETTCCEEEEETTSCCCSC
T ss_pred             CccccccCCCCCCCCCCEeECCCCCeEecccCCccccc
Confidence            37899985  57999999999999999994 4677654

>4aqt_A Laminin subunit gamma-1; cell adhesion; HET: NAG BMA; 3.20A {Mus musculus}

Probab=96.15  E-value=0.0021  Score=64.81  Aligned_cols=41  Identities=22%  Similarity=0.475  Sum_probs=27.6

Q ss_pred             CCCCC-eeecCCCCceeeeCCCCCcCCCCcccCCCCCCCCCC
Q psy15407        366 CTNQG-VCEPLPERQYQCRCTPGYHGQHCEFMIDACYGNPCR  406 (604)
Q Consensus       366 C~~~g-~C~~~~~~~~~C~C~~g~~G~~c~~~~~~C~~~~C~  406 (604)
                      |..++ .|.....+.+.|.|..+|.|..|+...+...+.|+.
T Consensus       257 Cngh~s~c~~~~~~~~~C~C~~nt~G~~Ce~C~~gy~~~p~~  298 (375)
T 4aqt_A          257 CNGHASECVKNEFDKLMCNCKHNTYGVDCEKCLPFFNDRPWR  298 (375)
T ss_dssp             CTTSCSCEEECTTSCEEECCCTTEESTTSCEECTTCCSSCCC
T ss_pred             CCCCCcccCCCCCCCeeeeCcCCCcCCCcccCCCCCcCCCCC
Confidence            44443 344444456789999999999998766656666654

>1gl4_A Nidogen-1, entactin; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: d.22.1.2 g.3.11.5 PDB: 1h4u_A

Probab=96.14  E-value=0.0014  Score=62.71  Aligned_cols=37  Identities=24%  Similarity=0.784  Sum_probs=26.6

Q ss_pred             cCCCCC--CCCCCCCCEEeeCCCCeEeeeCCCCc--cCCCC
Q psy15407        513 NVDDCV--NHMCQNGGTCVDGINDYTCKCEGDFV--GKFCE  549 (604)
Q Consensus       513 ~~~~C~--~~~C~~~~~C~~~~~~y~C~C~~G~~--G~~C~  549 (604)
                      ++|+|.  .++|..++.|+++.|+|.|.|++||.  |..|.
T Consensus         4 DiDEC~~~~~~C~~~a~C~Nt~Gsy~C~C~~Gy~GnG~~C~   44 (285)
T 1gl4_A            4 AQQTCANNRHQCSVHAECRDYATGFCCRCVANYTGNGRQCV   44 (285)
T ss_dssp             ---CHHHHGGGSCTTEEEEECSSCEEEEECTTEEECSSSEE
T ss_pred             cchhccCCCCCCCCCCEeEcCCCCeEEEcCCCCCCCCCcCC
Confidence            677886  56788888888888888888888887  44454

>1q4g_A Prostaglandin G/H synthase 1; cyclooxygenase, non-steroidal anti-inflammatory drug, peroxi prostaglandin synthase, EGF-like domain; HET: BOG NAG NDG BMA MAN BFL HEM; 2.00A {Ovis aries} SCOP: a.93.1.2 g.3.11.1 PDB: 1diy_A* 2ayl_A* 3kk6_A* 3n8v_A* 3n8w_A* 3n8x_A* 3n8y_A* 3n8z_A* 2oyu_P* 2oye_P* 1eqg_A* 1cqe_A* 1eqh_A* 1igz_A* 1igx_A* 1fe2_A* 1pge_A* 1pgf_A* 1pgg_A* 3n8w_B* ...

Probab=96.08  E-value=0.0024  Score=68.11  Aligned_cols=39  Identities=26%  Similarity=0.822  Sum_probs=32.8

Q ss_pred             CCcCCCCCCCCCcEEEe-CCCCeEEecC-CCCCCCCcccCC
Q psy15407        436 IDDCLSHKCENNATCVD-LIQAYECRCA-PGFQGEFCQTKT  474 (604)
Q Consensus       436 ~~~C~~~~C~~~~~C~~-~~~~~~C~C~-~g~~g~~C~~~~  474 (604)
                      +++|.++||.++|+|++ ..++|.|.|+ +||+|..|+...
T Consensus         2 ~d~C~~~PC~ngG~C~~~~~~~y~C~C~~~G~~G~~Ce~~~   42 (553)
T 1q4g_A            2 VNPCCYYPCQHQGICVRFGLDRYQCDCTRTGYSGPNCTIPE   42 (553)
T ss_dssp             CCGGGGCCCCTTCEEEEETTTEEEEECTTSSEETTTTCEEC
T ss_pred             CCcCCCCCCCCCCCcCCCCCCceEeeCCCCCcCCCCCCCCc
Confidence            57788889999999988 8888999999 999999887543

>3nt1_A Prostaglandin-endoperoxide synthase 2; prostaglandin H2 synthase, cyclooxygenase-2, naproxen, oxido; HET: NAG BOG NPS HEM; 1.73A {Mus musculus} PDB: 3ln1_A* 3mqe_A* 3ln0_A* 3ntb_A* 3q7d_A* 4fm5_A* 1pxx_A* 3pgh_A* 1cx2_A* 4cox_A* 5cox_A* 6cox_A* 3qh0_A* 3qmo_A* 4e1g_A* 3olu_A* 3olt_A* 3hs5_A* 3hs6_A* 3hs7_A* ...

Probab=95.93  E-value=0.003  Score=67.35  Aligned_cols=38  Identities=39%  Similarity=0.974  Sum_probs=32.9

Q ss_pred             CCCcCCCCCCCCeeecCCCCceeeeCC-CCCcCCCCccc
Q psy15407        359 NACYKSPCTNQGVCEPLPERQYQCRCT-PGYHGQHCEFM  396 (604)
Q Consensus       359 ~~C~~~~C~~~g~C~~~~~~~~~C~C~-~g~~G~~c~~~  396 (604)
                      ++|.++||.|+|+|.....+.|.|.|+ +||+|..|+..
T Consensus         2 d~C~s~PC~ngG~C~~~~~~~y~C~C~~~G~~G~~Ce~~   40 (587)
T 3nt1_A            2 NPCCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENCTTP   40 (587)
T ss_dssp             CTTTTCCCCTTCEEEEEETTEEEEECTTSSEETTTTCEE
T ss_pred             CCCCCCCCCCCCEeeCCCCCCeEEecCCCCccCCCCCCc
Confidence            578999999999999644468999999 99999999864

>1kli_L Factor VIIA; extrinsic coagulation pathway, serine protease activation, R drug design, substrate-assisted catalysis, hydrolase; 1.69A {Homo sapiens} SCOP: g.3.11.1 PDB: 1klj_L 1jbu_L 1ygc_L*

Probab=95.65  E-value=0.0055  Score=45.36  Aligned_cols=42  Identities=33%  Similarity=0.804  Sum_probs=26.6

Q ss_pred             CCCcCCCCCCCCCCCCceeecCC-CeEEecCCCCc----CCcCcccCCCC
Q psy15407        473 KTPFCAGEYNPCRNGARCLDHFS-HYTCECTPGFS----GVNCTVNVDDC  517 (604)
Q Consensus       473 ~~~~C~~~~~~C~~~~~C~~~~~-~~~C~C~~g~~----g~~c~~~~~~C  517 (604)
                      ++++|....+.|..  .|+++.+ +|+|.|++||.    |..|. ++++|
T Consensus         4 d~~eC~~~nggC~h--~C~n~~g~s~~C~C~~Gy~L~~D~~tC~-d~dec   50 (69)
T 1kli_L            4 DQLICVNENGGCEQ--YCSDHTGTKRSCRCHEGYSLLADGVSCT-PTVEY   50 (69)
T ss_dssp             CCCCTTSGGGGCSS--EEEEETTTEEEEECCTTEEECTTSSCEE-ECSSS
T ss_pred             ccccccCCCCCcCC--EeEcCCCCCEEEeCCCCCeECCCCCccc-Ccccc
Confidence            45666554455653  5777777 68888888885    44554 45555

>2i9a_A Urokinase-type plasminogen activator; growth factor-like domain, kringle domain, hydrolase; 1.90A {Homo sapiens} SCOP: g.3.11.1 g.14.1.1 PDB: 2i9b_A*

Probab=95.65  E-value=0.012  Score=50.74  Aligned_cols=59  Identities=25%  Similarity=0.501  Sum_probs=34.2

Q ss_pred             CCCCCCeeecCC-CCce-eeeCCCCCcCCCCcccCCCCCCCCCCCCCeeeeCCCCceEeeCCCCCcCCCCC
Q psy15407        365 PCTNQGVCEPLP-ERQY-QCRCTPGYHGQHCEFMIDACYGNPCRNSGTCKLLEEGRFNCECAPGYTGDRCE  433 (604)
Q Consensus       365 ~C~~~g~C~~~~-~~~~-~C~C~~g~~G~~c~~~~~~C~~~~C~~~~~C~~~~~~~~~C~C~~g~~g~~C~  433 (604)
                      ||.|+|+|+... ...+ .|.|+.||.|..|+.+.++          .|.......|+........|..|+
T Consensus        14 pC~NGGtC~~~~~~s~~~~C~Cp~g~~G~~Cei~~~~----------~C~~g~G~~YrG~~s~T~sG~~Cq   74 (145)
T 2i9a_A           14 DCLNGGTCVSNKYFSNIHWCNCPKKFGGQHCEIDKSK----------TCYEGNGHFYRGKASTDTMGRPCL   74 (145)
T ss_dssp             CCCTTCEEEECSSSTTCEEEECCTTEESTTSCEESSC----------CEECTTCTTCCSCCCBBTTSCBCC
T ss_pred             CCCCCCCcCCCccccCCccccCCCCCCCCceeccccc----------cCCCCCccccccceecCCcCCccc
Confidence            788888886531 1233 7888888888888765432          132222334555555555555554

>1gl4_A Nidogen-1, entactin; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: d.22.1.2 g.3.11.5 PDB: 1h4u_A

Probab=95.60  E-value=0.0021  Score=61.46  Aligned_cols=33  Identities=24%  Similarity=0.681  Sum_probs=14.7

Q ss_pred             CCcCCCCCCCCCCCCceeecCCCeEEecCCCCc
Q psy15407        474 TPFCAGEYNPCRNGARCLDHFSHYTCECTPGFS  506 (604)
Q Consensus       474 ~~~C~~~~~~C~~~~~C~~~~~~~~C~C~~g~~  506 (604)
                      +++|....+.|..++.|+|+.++|.|.|.+||.
T Consensus         5 iDEC~~~~~~C~~~a~C~Nt~Gsy~C~C~~Gy~   37 (285)
T 1gl4_A            5 QQTCANNRHQCSVHAECRDYATGFCCRCVANYT   37 (285)
T ss_dssp             --CHHHHGGGSCTTEEEEECSSCEEEEECTTEE
T ss_pred             chhccCCCCCCCCCCEeEcCCCCeEEEcCCCCC
Confidence            344433334444444455555555555555554

>1xdt_R Hbegf, heparin-binding epidermal growth factor; complex (toxin-growth factor), diphtheria toxin, receptor, H binding epidermal growth factor; 2.65A {Homo sapiens} SCOP: g.3.11.1

Probab=95.47  E-value=0.006  Score=45.84  Aligned_cols=35  Identities=26%  Similarity=0.790  Sum_probs=25.8

Q ss_pred             CCCC---CCCCCCCCEEe--eCCCCeEeeeCCCCccCCCCc
Q psy15407        515 DDCV---NHMCQNGGTCV--DGINDYTCKCEGDFVGKFCEI  550 (604)
Q Consensus       515 ~~C~---~~~C~~~~~C~--~~~~~y~C~C~~G~~G~~C~~  550 (604)
                      +.|.   .+.|.+| +|.  ...+.|.|.|.+||+|.+|+.
T Consensus        38 ~pC~~~~~~yClnG-~C~~i~~~~~~~C~C~~GYtG~RCE~   77 (79)
T 1xdt_R           38 DPCLRKYKDFCIHG-ECKYVKELRAPSCICHPGYHGERCHG   77 (79)
T ss_dssp             -CTTTTTTTCCSSE-EECCBGGGTBCCEEECTTEESTTCCE
T ss_pred             CCCCccccCcCCCC-EeeeecCCCCeEEEcCCCcccccccc
Confidence            4454   4678885 894  344678999999999999984

>1kig_L Factor XA; glycoprotein, serine protease, plasma, blood coagulation, complex (protease/inhibitor); 3.00A {Bos taurus} SCOP: g.3.11.1

Probab=95.45  E-value=0.0067  Score=41.91  Aligned_cols=33  Identities=21%  Similarity=0.657  Sum_probs=24.0

Q ss_pred             CCCCCCCceeecCCCeEEecCCCCc----CCcCcccCCCC
Q psy15407        482 NPCRNGARCLDHFSHYTCECTPGFS----GVNCTVNVDDC  517 (604)
Q Consensus       482 ~~C~~~~~C~~~~~~~~C~C~~g~~----g~~c~~~~~~C  517 (604)
                      +.|..  .|+++.++|+|.|++||.    |..|. ++++|
T Consensus         6 g~C~~--~C~n~~gs~~C~C~~Gy~L~~d~~tC~-dide~   42 (51)
T 1kig_L            6 GGCDQ--FCREERSEVRCSCAHGYVLGDDSKSCV-STERF   42 (51)
T ss_dssp             TSSSS--CCCEETTEECCCCCTTEEECTTSSCEE-ECSSS
T ss_pred             CCcCC--EeEcCCCCeEEeCCCCcEECCCCCccc-cCCcc
Confidence            45653  588888999999999996    55664 56665

>2jkh_L Factor X light chain; plasma, calcium, zymogen, secreted, protease, hydrolase, polymorphism, glycoprotein, gamma-carboxyglutamic acid; HET: BI7; 1.25A {Homo sapiens} PDB: 2bok_L* 2vvc_K* 2vvu_L* 2vvv_L* 2vwl_L* 2vwm_K* 2vwn_L* 2vwo_L* 2xbv_L* 2xbw_L* 2xbx_L* 2xby_L* 2xc0_L* 2xc4_L* 2xc5_L* 2gd4_L* 3kl6_B* 2y5f_L* 2y5g_L* 2y5h_L* ...

Probab=95.45  E-value=0.0058  Score=43.03  Aligned_cols=34  Identities=26%  Similarity=0.630  Sum_probs=25.8

Q ss_pred             CCCCC--CCCCCCCEEeeCCCCeEeeeCCCCc----cCCCCc
Q psy15407        515 DDCVN--HMCQNGGTCVDGINDYTCKCEGDFV----GKFCEI  550 (604)
Q Consensus       515 ~~C~~--~~C~~~~~C~~~~~~y~C~C~~G~~----G~~C~~  550 (604)
                      |+|..  +.|.+  .|++++|+|+|.|++||+    |..|+.
T Consensus         2 dEC~~~~~~C~~--~C~nt~Gsy~C~C~~Gy~L~~d~~~C~d   41 (55)
T 2jkh_L            2 KLCSLDNGDCDQ--FCHEEQNSVVCSCARGYTLADNGKACIP   41 (55)
T ss_dssp             CCTTTGGGGCSS--EEEEETTEEEEECCTTEEECTTSSCEEE
T ss_pred             ccccCCCCCcCc--EeEcCCCCeEEeCCCCCEECCCCCeecc
Confidence            45653  45764  899999999999999997    455543

>4aqt_A Laminin subunit gamma-1; cell adhesion; HET: NAG BMA; 3.20A {Mus musculus}

Probab=95.44  E-value=0.011  Score=59.63  Aligned_cols=30  Identities=30%  Similarity=0.854  Sum_probs=19.1

Q ss_pred             CCCCCCc-ee-ecCCCeEEecCCCCcCCcCcc
Q psy15407        483 PCRNGAR-CL-DHFSHYTCECTPGFSGVNCTV  512 (604)
Q Consensus       483 ~C~~~~~-C~-~~~~~~~C~C~~g~~g~~c~~  512 (604)
                      .|..++. |. +..+.+.|.|.+||.|..|+.
T Consensus       256 ~Cngh~s~c~~~~~~~~~C~C~~nt~G~~Ce~  287 (375)
T 4aqt_A          256 KCNGHASECVKNEFDKLMCNCKHNTYGVDCEK  287 (375)
T ss_dssp             CCTTSCSCEEECTTSCEEECCCTTEESTTSCE
T ss_pred             cCCCCCcccCCCCCCCeeeeCcCCCcCCCccc
Confidence            4665554 32 334567778888888888763

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=95.39  E-value=0.0028  Score=57.77  Aligned_cols=82  Identities=9%  Similarity=0.034  Sum_probs=60.1

Q ss_pred             cceeecCCCC-ceeec----cCCCCCCCCCCCeEEecCCcceeeecc----ccCCCCcccEEEccCCccccCCc----cc
Q psy15407        217 STMYRDLSNN-QIGFL----SNFTFSPLSKLSQLILSYNKLQCIDRD----ALAGLKSLRIISLHGNDISMIPE----GA  283 (604)
Q Consensus       217 ~L~~L~Ls~N-~i~~l----~~~~f~~l~~L~~L~Ls~N~l~~i~~~----~f~~l~~L~~L~Ls~N~l~~i~~----~~  283 (604)
                      +|+.|+|++| +|..-    ...++..-..|+.|+|++|.|......    ++..-+.|+.|+|+.|.|..--.    .+
T Consensus        42 ~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~a  121 (197)
T 1pgv_A           42 DLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRS  121 (197)
T ss_dssp             SCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHH
T ss_pred             CccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHH
Confidence            7999999986 77642    123456678899999999999864433    34456889999999999984221    23


Q ss_pred             ccCcccceeeeccCC
Q psy15407        284 FADLHAITHLAIGGN  298 (604)
Q Consensus       284 f~~l~~L~~L~L~~N  298 (604)
                      +..-+.|+.|+|++|
T Consensus       122 L~~N~tL~~L~L~n~  136 (197)
T 1pgv_A          122 TLVTQSIVEFKADNQ  136 (197)
T ss_dssp             TTTTCCCSEEECCCC
T ss_pred             HhhCCceeEEECCCC
Confidence            555567999999865

>3cfw_A L-selectin; EGF, cell adhesion, EGF-like domain, glycoprotein, membrane, sushi, transmembrane; HET: NAG MAN BMA; 2.20A {Homo sapiens}

Probab=95.38  E-value=0.011  Score=52.44  Aligned_cols=34  Identities=38%  Similarity=1.003  Sum_probs=30.1

Q ss_pred             CCCCCCCCCCEEeeCCCCeEeeeCCCCccCCCCc
Q psy15407        517 CVNHMCQNGGTCVDGINDYTCKCEGDFVGKFCEI  550 (604)
Q Consensus       517 C~~~~C~~~~~C~~~~~~y~C~C~~G~~G~~C~~  550 (604)
                      |...+|..+|+|++..++|.|.|.+||.|..|+.
T Consensus       122 ~~~~~C~~~g~C~~~~~~~~c~C~~g~~g~~C~~  155 (164)
T 3cfw_A          122 CQPWSCSGHGECVEIINNYTCNCDVGYYGPQCQF  155 (164)
T ss_dssp             CCTTSSCSSEEEEEETTEEEEEECTTCBSSSSCB
T ss_pred             CCCCcCCCCCeecccCCCceeeeCCCcccccccc
Confidence            4456799899999999999999999999999986

>1n1i_A Merozoite surface protein-1; MSP1, malaria, surface antigen, glycoprotein, EGF domain, cell adhesion; HET: HIS; 2.40A {Plasmodium knowlesi strain H} SCOP: g.3.11.4 g.3.11.4

Probab=95.36  E-value=0.042  Score=43.32  Aligned_cols=67  Identities=19%  Similarity=0.459  Sum_probs=50.6

Q ss_pred             CCCCCCCCCCCeeeeCCCCceEeeCCCCCcC--CCCCcCCCc-CCC--CCCCCCcEEEeCC-CCeEEecCCCCC
Q psy15407        399 ACYGNPCRNSGTCKLLEEGRFNCECAPGYTG--DRCEINIDD-CLS--HKCENNATCVDLI-QAYECRCAPGFQ  466 (604)
Q Consensus       399 ~C~~~~C~~~~~C~~~~~~~~~C~C~~g~~g--~~C~~~~~~-C~~--~~C~~~~~C~~~~-~~~~C~C~~g~~  466 (604)
                      .|....|..++.|.....|.-.|.|..||.+  ..|..+ ++ |..  .-|..++.|.... ....|.|.++|.
T Consensus        12 ~C~~t~Cp~NA~C~r~~~G~e~CrCl~gY~~dg~~Cv~~-Np~C~~nNGGCd~nAeC~~~~~~ki~C~C~~~~~   84 (105)
T 1n1i_A           12 KCIDTNVPENAACYRYLDGTEEWRCLLGFKEVGGKCVPA-SITCEENNGGCAPEAECTMDDKKEVECKCTKEGS   84 (105)
T ss_dssp             SCCSSCCCTTEEEEECTTSCEEEEECTTEEECSSSEEEC-CCCTTSGGGGSCTTSEEEECTTSCEEEECCSTTC
T ss_pred             EecCCCCCCCCCeEECCCCCEeEEEECCeeccCCEEEEC-CcchhhcCCCcCCCcEeEECCCCEEEeECCCCCC
Confidence            3555567778888887788889999999984  467544 55 653  3488999999874 788999999975

>2y38_A Laminin subunit alpha-5; structural protein, cell adhesion, basement membrane; HET: NAG; 2.90A {Mus musculus}

Probab=95.21  E-value=0.042  Score=55.62  Aligned_cols=20  Identities=25%  Similarity=0.401  Sum_probs=14.4

Q ss_pred             CeEee-eCCCCccCCCCcCcc
Q psy15407        534 DYTCK-CEGDFVGKFCEIAPF  553 (604)
Q Consensus       534 ~y~C~-C~~G~~G~~C~~~~~  553 (604)
                      +.+|. |..++.|.+|+.+..
T Consensus       356 ~G~C~~C~~nt~G~~CErC~~  376 (403)
T 2y38_A          356 GGVCLDCQHHTTGINCERCLP  376 (403)
T ss_dssp             CEEESSCCSSEESTTSCEECT
T ss_pred             CCCCCCCcCcCcCCCCCcCCC
Confidence            44774 888888888887543

>3e50_C Protransforming growth factor alpha; IDE, TGF-alpha, cytoplasm, hydrolase, metal-binding, metalloprotease, polymorphism, protease, zinc; 2.30A {Homo sapiens} SCOP: g.3.11.1 PDB: 1yuf_A 1yug_A 2tgf_A 1mox_C 3tgf_A 4tgf_A

Probab=95.17  E-value=0.016  Score=39.60  Aligned_cols=30  Identities=33%  Similarity=0.779  Sum_probs=24.1

Q ss_pred             CCCCCCCEEee--CCCCeEeeeCCCCccCCCCc
Q psy15407        520 HMCQNGGTCVD--GINDYTCKCEGDFVGKFCEI  550 (604)
Q Consensus       520 ~~C~~~~~C~~--~~~~y~C~C~~G~~G~~C~~  550 (604)
                      +.|.+| +|.-  ..+.+.|.|++||+|.+|+.
T Consensus        14 ~yC~nG-~C~~~~~~~~~~C~C~~gy~G~RCe~   45 (50)
T 3e50_C           14 QFCFHG-TCRFLVQEDKPACVCHSGYVGARCEH   45 (50)
T ss_pred             CcccCC-EEeeccCCCCeEEECCCCCcccCCCc
Confidence            468775 8964  44678999999999999985

>1iox_A Betacellulin; EGF-like fold, hormone/growth factor complex; NMR {Homo sapiens} SCOP: g.3.11.1 PDB: 1ip0_A

Probab=95.07  E-value=0.015  Score=39.82  Aligned_cols=32  Identities=38%  Similarity=0.835  Sum_probs=19.6

Q ss_pred             CCCCCCCCeeec-CCCCceeeeCCCCCcCCCCcc
Q psy15407        363 KSPCTNQGVCEP-LPERQYQCRCTPGYHGQHCEF  395 (604)
Q Consensus       363 ~~~C~~~g~C~~-~~~~~~~C~C~~g~~G~~c~~  395 (604)
                      .+.|.| |+|.. ...+.+.|.|+.||+|.+|+.
T Consensus        13 ~~yC~n-G~C~~~~~~~~~~C~C~~gy~G~RCe~   45 (50)
T 1iox_A           13 KHYCIK-GRCRFVVAEQTPSCVCDEGYIGARCER   45 (50)
T ss_dssp             TTSCTT-CCEEEETTTTEEEECCCTTEETTTTCE
T ss_pred             cCcccC-CEEEeEcCCCCeEEECCCCcccCCCCe
Confidence            355666 67742 223456777777777777764

>2p26_A Integrin beta-2; hybrid domain, PSI domain, I-EGF DOM cell adhesion; HET: NAG; 1.75A {Homo sapiens} PDB: 1yuk_B* 1yuk_A* 2p28_A*

Probab=95.05  E-value=0.011  Score=56.94  Aligned_cols=59  Identities=31%  Similarity=0.786  Sum_probs=41.1

Q ss_pred             CCCCCceeecCCCeEEecCCCCcCCcCcccCC---------CCCCC----CCCCCCEEeeCCCCeEeeeCCCC------c
Q psy15407        484 CRNGARCLDHFSHYTCECTPGFSGVNCTVNVD---------DCVNH----MCQNGGTCVDGINDYTCKCEGDF------V  544 (604)
Q Consensus       484 C~~~~~C~~~~~~~~C~C~~g~~g~~c~~~~~---------~C~~~----~C~~~~~C~~~~~~y~C~C~~G~------~  544 (604)
                      |..+|.|.-    ..|.|.+||.|..|+-..+         .|...    .|+.+|.|+-+    +|.|..+|      .
T Consensus       198 C~g~G~~~C----G~C~C~~g~~G~~CeC~~~~~~~~~~~~~C~~~~~~~~CSgrG~C~CG----~C~C~~~~~~~~~~~  269 (280)
T 2p26_A          198 CHGKGFLEC----GICRCDTGYIGKNCECQTQGRSSQELEGSCRKDNNSIICSGLGDCVCG----QCLCHTSDVPGKLIY  269 (280)
T ss_dssp             GGGSEEEET----TEEEECTTEESTTSCEECTTSCHHHHHHTTCSSTTSCGGGGSEEEETT----EEEECCCSSTTCEEE
T ss_pred             cCCCCeECC----CceeCCCCCcCCcceecCCccccccccccCCCCCCCCccCCCceEeCC----eeECcCCCCCCeeEe
Confidence            554555542    3588999999988863322         57532    49999999976    89998776      5


Q ss_pred             cCCCCc
Q psy15407        545 GKFCEI  550 (604)
Q Consensus       545 G~~C~~  550 (604)
                      |.+|+.
T Consensus       270 G~~~~~  275 (280)
T 2p26_A          270 GQYCEH  275 (280)
T ss_dssp             STTSCE
T ss_pred             eEeccc
Confidence            667663

>2rnl_A Amphiregulin; AR, colorectum cell-derived growth factor, EGF-like domain, CRDGF, cytokine, glycoprotein, membrane, polymorphism, transmembrane; NMR {Homo sapiens}

Probab=95.01  E-value=0.02  Score=39.11  Aligned_cols=30  Identities=30%  Similarity=0.926  Sum_probs=23.5

Q ss_pred             CCCCCCCEEe--eCCCCeEeeeCCCCccCCCCc
Q psy15407        520 HMCQNGGTCV--DGINDYTCKCEGDFVGKFCEI  550 (604)
Q Consensus       520 ~~C~~~~~C~--~~~~~y~C~C~~G~~G~~C~~  550 (604)
                      +.|.+ |+|.  ...+.+.|.|+.||+|.+|+.
T Consensus        18 ~yC~n-G~C~~i~~~~~~~C~C~~gy~G~RCe~   49 (50)
T 2rnl_A           18 NFCIH-GECKYIEHLEAVTCKCQQEYFGERCGE   49 (50)
T ss_dssp             GTCSS-SEEEEETTTTEEEEECCSSCCSSSCCC
T ss_pred             CcCCC-CEEEEecCCCCeeEECCCCcccccccc
Confidence            46776 5896  456678899999999999974

>1szb_A Mannose binding lectin-associated serine protease-2 related protein, MAP19 (19KDA)...; calcium, complement, innate immunity, CUB, EGF; 2.50A {Homo sapiens} SCOP: b.23.1.1 g.3.11.1

Probab=94.73  E-value=0.0079  Score=53.76  Aligned_cols=40  Identities=23%  Similarity=0.769  Sum_probs=31.2

Q ss_pred             CCCcCCcCcccCCCCCCCC-----CCCCCEEeeCCCCeEeeeCCCCc
Q psy15407        503 PGFSGVNCTVNVDDCVNHM-----CQNGGTCVDGINDYTCKCEGDFV  544 (604)
Q Consensus       503 ~g~~g~~c~~~~~~C~~~~-----C~~~~~C~~~~~~y~C~C~~G~~  544 (604)
                      .||.+..+..++++|...+     |.+  .|++..|+|+|.|++||+
T Consensus       113 ~Gf~~~~~~~di~eC~~~~~~~~~C~~--~C~n~~g~~~C~C~~Gy~  157 (170)
T 1szb_A          113 TGFEAFYAAEDIDECQVAPGEAPTCDH--HCHNHLGGFYCSCRAGYV  157 (170)
T ss_dssp             CEEEEEEEEEECCTTCCCTTSCCSSSS--EEEEETTEEEEECCTTEE
T ss_pred             cCceeeeeccccCcccCCCCCCCccCC--ccccCCCCEEEeCCCCcE
Confidence            5676666666778887543     765  799999999999999997

>2y38_A Laminin subunit alpha-5; structural protein, cell adhesion, basement membrane; HET: NAG; 2.90A {Mus musculus}

Probab=94.70  E-value=0.051  Score=54.98  Aligned_cols=19  Identities=16%  Similarity=0.251  Sum_probs=15.9

Q ss_pred             CCeeee-cCCCCcCCCCCCC
Q psy15407        581 NDYLCK-CAPGYSGKESLLQ  599 (604)
Q Consensus       581 ~~~~C~-C~~G~~G~~C~~~  599 (604)
                      ++.+|. |..+++|.+||..
T Consensus       355 ~~G~C~~C~~nt~G~~CErC  374 (403)
T 2y38_A          355 GGGVCLDCQHHTTGINCERC  374 (403)
T ss_dssp             CCEEESSCCSSEESTTSCEE
T ss_pred             CCCCCCCCcCcCcCCCCCcC
Confidence            457896 9999999999964

>1g1t_A E-selectin; EGF, adhesion molecule, SLEX, immune system, membrane protein; HET: SIA GAL MAG FUC; 1.50A {Homo sapiens} SCOP: d.169.1.1 g.3.11.1 PDB: 1esl_A

Probab=94.69  E-value=0.011  Score=51.84  Aligned_cols=36  Identities=47%  Similarity=1.062  Sum_probs=30.3

Q ss_pred             CCCCCCCCCCCCEEeeCCCCeEeeeCCCCccCCCCc
Q psy15407        515 DDCVNHMCQNGGTCVDGINDYTCKCEGDFVGKFCEI  550 (604)
Q Consensus       515 ~~C~~~~C~~~~~C~~~~~~y~C~C~~G~~G~~C~~  550 (604)
                      +.|...||.+++.|.+..+.|.|.|.+||.|..||.
T Consensus       120 ~~~~~~pc~~~g~C~~~~~~~~c~C~~g~~g~~Ce~  155 (157)
T 1g1t_A          120 AACTNTSCSGHGECVETINNYTCKCDPGFSGLKCEQ  155 (157)
T ss_dssp             CCCCTTGGGGSEEEEEETTEEEEEECTTEESTTSCE
T ss_pred             CCCCCCCCCCCCEeecCCCCeeEECCCCccCccccc
Confidence            345566888889999988999999999999999985

>1g1t_A E-selectin; EGF, adhesion molecule, SLEX, immune system, membrane protein; HET: SIA GAL MAG FUC; 1.50A {Homo sapiens} SCOP: d.169.1.1 g.3.11.1 PDB: 1esl_A

Probab=94.69  E-value=0.0069  Score=53.25  Aligned_cols=35  Identities=37%  Similarity=1.077  Sum_probs=23.8

Q ss_pred             cCCCCCCCCCcEEEeCCCCeEEecCCCCCCCCccc
Q psy15407        438 DCLSHKCENNATCVDLIQAYECRCAPGFQGEFCQT  472 (604)
Q Consensus       438 ~C~~~~C~~~~~C~~~~~~~~C~C~~g~~g~~C~~  472 (604)
                      +|...||.+++.|.+..+.|.|.|.+||.|..|+.
T Consensus       121 ~~~~~pc~~~g~C~~~~~~~~c~C~~g~~g~~Ce~  155 (157)
T 1g1t_A          121 ACTNTSCSGHGECVETINNYTCKCDPGFSGLKCEQ  155 (157)
T ss_dssp             CCCTTGGGGSEEEEEETTEEEEEECTTEESTTSCE
T ss_pred             CCCCCCCCCCCEeecCCCCeeEECCCCccCccccc
Confidence            34455666667777777777777777777777764

>2ygo_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling pathway, WNT antagonist, MO cancer, glycosaminoglycan; HET: MLY PCF NAG; 1.85A {Homo sapiens} PDB: 2ygp_A*

Probab=94.61  E-value=0.02  Score=50.77  Aligned_cols=27  Identities=30%  Similarity=0.843  Sum_probs=22.4

Q ss_pred             CCCCCc-eeCCCCCCCeeeecCCCCcCCCCCCC
Q psy15407        568 DCKNGI-CFQPQGSNDYLCKCAPGYSGKESLLQ  599 (604)
Q Consensus       568 ~C~~g~-C~~~~g~~~~~C~C~~G~~G~~C~~~  599 (604)
                      .|.||+ |+...     +|.|++||+|.+|+.-
T Consensus       154 ~C~ngG~Cv~P~-----~C~C~~Gw~G~~C~~~  181 (188)
T 2ygo_A          154 GCRNGGFCNERR-----ICECPDGFHGPHCEGT  181 (188)
T ss_dssp             CCCTTCEECTTS-----CEECCTTCBTTTTCBC
T ss_pred             CCCCCCEeCCCC-----cccCcCCCCCCCCcCC
Confidence            577776 98755     6999999999999864

>1kli_L Factor VIIA; extrinsic coagulation pathway, serine protease activation, R drug design, substrate-assisted catalysis, hydrolase; 1.69A {Homo sapiens} SCOP: g.3.11.1 PDB: 1klj_L 1jbu_L 1ygc_L*

Probab=94.44  E-value=0.018  Score=42.52  Aligned_cols=37  Identities=27%  Similarity=0.631  Sum_probs=28.4

Q ss_pred             ccCCCCCC--CCCCCCCEEeeCCC-CeEeeeCCCCc----cCCCCc
Q psy15407        512 VNVDDCVN--HMCQNGGTCVDGIN-DYTCKCEGDFV----GKFCEI  550 (604)
Q Consensus       512 ~~~~~C~~--~~C~~~~~C~~~~~-~y~C~C~~G~~----G~~C~~  550 (604)
                      .++++|..  ..|++  .|+++.| +|+|.|++||.    |..|..
T Consensus         3 ~d~~eC~~~nggC~h--~C~n~~g~s~~C~C~~Gy~L~~D~~tC~d   46 (69)
T 1kli_L            3 DDQLICVNENGGCEQ--YCSDHTGTKRSCRCHEGYSLLADGVSCTP   46 (69)
T ss_dssp             SCCCCTTSGGGGCSS--EEEEETTTEEEEECCTTEEECTTSSCEEE
T ss_pred             cccccccCCCCCcCC--EeEcCCCCCEEEeCCCCCeECCCCCcccC
Confidence            46788864  34765  7999998 89999999997    555653

>3asi_A Neurexin-1-alpha; beta-sandwich, cell adhesion, synapse maturation, neuroligin glycosylation, membrane; HET: NAG; 2.30A {Bos taurus}

Probab=94.24  E-value=0.035  Score=57.24  Aligned_cols=40  Identities=30%  Similarity=0.930  Sum_probs=20.3

Q ss_pred             cccCCCcCCCCCCCCCCCCceeecCCCeEEecCC-CCcCCcCc
Q psy15407        470 CQTKTPFCAGEYNPCRNGARCLDHFSHYTCECTP-GFSGVNCT  511 (604)
Q Consensus       470 C~~~~~~C~~~~~~C~~~~~C~~~~~~~~C~C~~-g~~g~~c~  511 (604)
                      |....+.|..  ++|.++++|++..++|+|.|+. ||.|..|+
T Consensus       181 C~~~~~~C~~--~pC~n~g~C~~~~~~~~C~C~~~~~~G~~C~  221 (410)
T 3asi_A          181 CEGPSTTCQE--DSCSNQGVCLQQWDGFSCDCSMTSFSGPLCN  221 (410)
T ss_dssp             CCCCSSCCCT--TSSSTTCEEEECSSSEEEECTTTSEESTTSC
T ss_pred             CCCCCCCccc--ccCCCCCEecCCCCCceEeccCCcccCCCCC
Confidence            4434444543  3555555555555555555553 55555554

>2bz6_L Blood coagulation factor VIIA; serine protease, enzyme complex, hydrolase; HET: 346; 1.6A {Homo sapiens} SCOP: g.3.11.1 PDB: 1w8b_L* 1w7x_L* 1cvw_L*

Probab=94.03  E-value=0.022  Score=39.67  Aligned_cols=33  Identities=36%  Similarity=0.888  Sum_probs=22.9

Q ss_pred             CCCCCCCceeecCC-CeEEecCCCCc----CCcCcccCCCC
Q psy15407        482 NPCRNGARCLDHFS-HYTCECTPGFS----GVNCTVNVDDC  517 (604)
Q Consensus       482 ~~C~~~~~C~~~~~-~~~C~C~~g~~----g~~c~~~~~~C  517 (604)
                      +.|..  .|+++.+ +|+|.|++||.    |..|. ++++|
T Consensus         7 ggC~~--~C~n~~ggs~~C~C~~Gy~L~~Dg~tC~-d~dec   44 (53)
T 2bz6_L            7 GGCEQ--YCSDHTGTKRSCRCHEGYSLLADGVSCT-PTVEY   44 (53)
T ss_dssp             GGCSS--EEEEETTTEEEEECCTTEEECTTSSCEE-ECSSS
T ss_pred             CCcCC--EeEcCCCCCEEeeCCCCCEECCCCCccc-CCccc
Confidence            34543  5888887 68888888886    55664 56666

>2ygo_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling pathway, WNT antagonist, MO cancer, glycosaminoglycan; HET: MLY PCF NAG; 1.85A {Homo sapiens} PDB: 2ygp_A*

Probab=93.41  E-value=0.047  Score=48.40  Aligned_cols=30  Identities=43%  Similarity=1.115  Sum_probs=25.2

Q ss_pred             CcCCCCCCCCeeecCCCCceeeeCCCCCcCCCCcc
Q psy15407        361 CYKSPCTNQGVCEPLPERQYQCRCTPGYHGQHCEF  395 (604)
Q Consensus       361 C~~~~C~~~g~C~~~~~~~~~C~C~~g~~G~~c~~  395 (604)
                      |. .+|.|+|.|+.    ...|.|+.||.|..|+.
T Consensus       151 C~-~~C~ngG~Cv~----P~~C~C~~Gw~G~~C~~  180 (188)
T 2ygo_A          151 CP-GGCRNGGFCNE----RRICECPDGFHGPHCEG  180 (188)
T ss_dssp             CT-TCCCTTCEECT----TSCEECCTTCBTTTTCB
T ss_pred             cC-CCCCCCCEeCC----CCcccCcCCCCCCCCcC
Confidence            44 58999999984    34999999999999984

>2p26_A Integrin beta-2; hybrid domain, PSI domain, I-EGF DOM cell adhesion; HET: NAG; 1.75A {Homo sapiens} PDB: 1yuk_B* 1yuk_A* 2p28_A*

Probab=93.15  E-value=0.049  Score=52.33  Aligned_cols=67  Identities=24%  Similarity=0.518  Sum_probs=39.9

Q ss_pred             CCCCCEEeeCCCCeEeeeCCCCccCCCCcCcccccCCCCCCCCCCC----CCC-CCceeCCCCCCCeeeecCCCC-----
Q psy15407        522 CQNGGTCVDGINDYTCKCEGDFVGKFCEIAPFVAMMYPQTSPCQHH----DCK-NGICFQPQGSNDYLCKCAPGY-----  591 (604)
Q Consensus       522 C~~~~~C~~~~~~y~C~C~~G~~G~~C~~~~~~~~~~~~~~~C~~~----~C~-~g~C~~~~g~~~~~C~C~~G~-----  591 (604)
                      |..+|+|.-+    .|.|.+||.|..|+-.............|...    .|. +|.|+-.      +|.|..+|     
T Consensus       198 C~g~G~~~CG----~C~C~~g~~G~~CeC~~~~~~~~~~~~~C~~~~~~~~CSgrG~C~CG------~C~C~~~~~~~~~  267 (280)
T 2p26_A          198 CHGKGFLECG----ICRCDTGYIGKNCECQTQGRSSQELEGSCRKDNNSIICSGLGDCVCG------QCLCHTSDVPGKL  267 (280)
T ss_dssp             GGGSEEEETT----EEEECTTEESTTSCEECTTSCHHHHHHTTCSSTTSCGGGGSEEEETT------EEEECCCSSTTCE
T ss_pred             cCCCCeECCC----ceeCCCCCcCCcceecCCccccccccccCCCCCCCCccCCCceEeCC------eeECcCCCCCCee
Confidence            7767888764    79999999999998431100000000134321    243 3447643      49997775     


Q ss_pred             -cCCCCCC
Q psy15407        592 -SGKESLL  598 (604)
Q Consensus       592 -~G~~C~~  598 (604)
                       .|++||-
T Consensus       268 ~~G~~~~~  275 (280)
T 2p26_A          268 IYGQYCEH  275 (280)
T ss_dssp             EESTTSCE
T ss_pred             EeeEeccc
Confidence             7888873

>1szb_A Mannose binding lectin-associated serine protease-2 related protein, MAP19 (19KDA)...; calcium, complement, innate immunity, CUB, EGF; 2.50A {Homo sapiens} SCOP: b.23.1.1 g.3.11.1

Probab=92.68  E-value=0.028  Score=50.10  Aligned_cols=40  Identities=23%  Similarity=0.726  Sum_probs=24.1

Q ss_pred             CCCcCCCCCcCCCcCCCCC-----CCCCcEEEeCCCCeEEecCCCCC
Q psy15407        425 PGYTGDRCEINIDDCLSHK-----CENNATCVDLIQAYECRCAPGFQ  466 (604)
Q Consensus       425 ~g~~g~~C~~~~~~C~~~~-----C~~~~~C~~~~~~~~C~C~~g~~  466 (604)
                      .||.+..+..++++|...+     |.+  .|+++.++|.|.|.+||.
T Consensus       113 ~Gf~~~~~~~di~eC~~~~~~~~~C~~--~C~n~~g~~~C~C~~Gy~  157 (170)
T 1szb_A          113 TGFEAFYAAEDIDECQVAPGEAPTCDH--HCHNHLGGFYCSCRAGYV  157 (170)
T ss_dssp             CEEEEEEEEEECCTTCCCTTSCCSSSS--EEEEETTEEEEECCTTEE
T ss_pred             cCceeeeeccccCcccCCCCCCCccCC--ccccCCCCEEEeCCCCcE
Confidence            3444433334555665432     543  677777788888888886

>3asi_A Neurexin-1-alpha; beta-sandwich, cell adhesion, synapse maturation, neuroligin glycosylation, membrane; HET: NAG; 2.30A {Bos taurus}

Probab=92.53  E-value=0.085  Score=54.32  Aligned_cols=43  Identities=28%  Similarity=0.743  Sum_probs=32.9

Q ss_pred             CCCcccCCCCCCCCCCCCCeeeeCCCCceEeeCCC-CCcCCCCCc
Q psy15407        391 QHCEFMIDACYGNPCRNSGTCKLLEEGRFNCECAP-GYTGDRCEI  434 (604)
Q Consensus       391 ~~c~~~~~~C~~~~C~~~~~C~~~~~~~~~C~C~~-g~~g~~C~~  434 (604)
                      ..|+...+.|..+||.++|+|.. ..+.|.|.|+. ||.|..|+.
T Consensus       179 ~gC~~~~~~C~~~pC~n~g~C~~-~~~~~~C~C~~~~~~G~~C~~  222 (410)
T 3asi_A          179 RGCEGPSTTCQEDSCSNQGVCLQ-QWDGFSCDCSMTSFSGPLCND  222 (410)
T ss_dssp             ESCCCCSSCCCTTSSSTTCEEEE-CSSSEEEECTTTSEESTTSCE
T ss_pred             CCCCCCCCCcccccCCCCCEecC-CCCCceEeccCCcccCCCCCC
Confidence            35765667888888888888876 46778888885 888888874

>1kig_L Factor XA; glycoprotein, serine protease, plasma, blood coagulation, complex (protease/inhibitor); 3.00A {Bos taurus} SCOP: g.3.11.1

Probab=91.34  E-value=0.054  Score=37.26  Aligned_cols=28  Identities=25%  Similarity=0.686  Sum_probs=22.3

Q ss_pred             CCCCCCEEeeCCCCeEeeeCCCCc----cCCCCc
Q psy15407        521 MCQNGGTCVDGINDYTCKCEGDFV----GKFCEI  550 (604)
Q Consensus       521 ~C~~~~~C~~~~~~y~C~C~~G~~----G~~C~~  550 (604)
                      .|.+  .|++++|+|+|.|++||+    |..|+.
T Consensus         7 ~C~~--~C~n~~gs~~C~C~~Gy~L~~d~~tC~d   38 (51)
T 1kig_L            7 GCDQ--FCREERSEVRCSCAHGYVLGDDSKSCVS   38 (51)
T ss_dssp             SSSS--CCCEETTEECCCCCTTEEECTTSSCEEE
T ss_pred             CcCC--EeEcCCCCeEEeCCCCcEECCCCCcccc
Confidence            4654  699999999999999997    555653

>2bz6_L Blood coagulation factor VIIA; serine protease, enzyme complex, hydrolase; HET: 346; 1.6A {Homo sapiens} SCOP: g.3.11.1 PDB: 1w8b_L* 1w7x_L* 1cvw_L*

Probab=91.17  E-value=0.1  Score=36.21  Aligned_cols=28  Identities=25%  Similarity=0.746  Sum_probs=22.2

Q ss_pred             CCCCCCEEeeCCC-CeEeeeCCCCc----cCCCCc
Q psy15407        521 MCQNGGTCVDGIN-DYTCKCEGDFV----GKFCEI  550 (604)
Q Consensus       521 ~C~~~~~C~~~~~-~y~C~C~~G~~----G~~C~~  550 (604)
                      .|++  .|+++.+ +|+|.|++||+    |..|+.
T Consensus         8 gC~~--~C~n~~ggs~~C~C~~Gy~L~~Dg~tC~d   40 (53)
T 2bz6_L            8 GCEQ--YCSDHTGTKRSCRCHEGYSLLADGVSCTP   40 (53)
T ss_dssp             GCSS--EEEEETTTEEEEECCTTEEECTTSSCEEE
T ss_pred             CcCC--EeEcCCCCCEEeeCCCCCEECCCCCcccC
Confidence            4654  7999998 79999999997    556653

>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}

Probab=90.47  E-value=0.49  Score=37.69  Aligned_cols=50  Identities=14%  Similarity=0.243  Sum_probs=41.0

Q ss_pred             CCceeeccCCCCCCCCCCCeEEecCCcceeeeccccCCCCcccEEEccCCc
Q psy15407        225 NNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGND  275 (604)
Q Consensus       225 ~N~i~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~  275 (604)
                      +..++.|...+|.+..+|+.+.|-.+ ++.|...+|.+..+|+.+.|....
T Consensus         5 g~~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~~   54 (100)
T 2lz0_A            5 GEPVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGED   54 (100)
T ss_dssp             CCCCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCSC
T ss_pred             CCccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCCC
Confidence            45677888889999999999988764 788888889888888888887654

>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET: NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A*

Probab=90.00  E-value=0.19  Score=59.53  Aligned_cols=42  Identities=26%  Similarity=0.821  Sum_probs=35.9

Q ss_pred             CcccCCCCCCCCCCCCCEEeeCCCCeEeeeC-CCCccCCCCcC
Q psy15407        510 CTVNVDDCVNHMCQNGGTCVDGINDYTCKCE-GDFVGKFCEIA  551 (604)
Q Consensus       510 c~~~~~~C~~~~C~~~~~C~~~~~~y~C~C~-~G~~G~~C~~~  551 (604)
                      |....+.|...||.++|+|....++|.|.|+ +||.|..|+..
T Consensus      1013 C~~~~~~C~~~pC~ngG~C~~~~~~~~C~C~~~g~~G~~C~~~ 1055 (1245)
T 3qcw_A         1013 CEGPSTTCQEDSCSNQGVCLQQWDGFSCDCSMTSFSGPLCNDP 1055 (1245)
T ss_dssp             SSCCCCCCCTTSSSSSCEEEEETTEEEEECTTSSCBSTTSCBC
T ss_pred             eecccCceECCcCCCCCEeCCCCCCCEEECCCCCCCCCCccCC
Confidence            3333467888999999999998899999999 69999999864

>1nzi_A Complement C1S component; calcium, innate immunity, modular structure, CUB, EGF, hydrolase; 1.50A {Homo sapiens} SCOP: b.23.1.1 g.3.11.1

Probab=89.54  E-value=0.11  Score=45.46  Aligned_cols=39  Identities=23%  Similarity=0.737  Sum_probs=27.0

Q ss_pred             CCcCCcCcccCCCCCC---CCCCCCCEEeeCCCCeEeeeCCCCc
Q psy15407        504 GFSGVNCTVNVDDCVN---HMCQNGGTCVDGINDYTCKCEGDFV  544 (604)
Q Consensus       504 g~~g~~c~~~~~~C~~---~~C~~~~~C~~~~~~y~C~C~~G~~  544 (604)
                      ||.......++++|..   .+|.  ..|.+..++|+|.|.+||.
T Consensus       107 GF~~~y~~~d~~eC~~~~~~~C~--~~C~n~~g~~~C~C~~Gy~  148 (159)
T 1nzi_A          107 GFAAYYVATDINECTDFVDVPCS--HFCNNFIGGYFCSCPPEYF  148 (159)
T ss_dssp             EEEEEEEEEECCTTTC-CCCCSS--SEEEEETTEEEEECCTTCE
T ss_pred             cceeeeecccCcccCCCCCCCCC--CcccCcCCCEEEecCCCcE
Confidence            4443333446677764   3565  4788888999999999997

>2e26_A Reelin, reeler protein; signaling protein; HET: NAG BMA; 2.00A {Mus musculus} PDB: 3a7q_A*

Probab=88.89  E-value=0.095  Score=56.50  Aligned_cols=44  Identities=18%  Similarity=0.474  Sum_probs=22.6

Q ss_pred             ecCCCCCCCCcccCCCcCCCCCCCCCCCCceeecCCCeEEecCCCCcCCcCc
Q psy15407        460 RCAPGFQGEFCQTKTPFCAGEYNPCRNGARCLDHFSHYTCECTPGFSGVNCT  511 (604)
Q Consensus       460 ~C~~g~~g~~C~~~~~~C~~~~~~C~~~~~C~~~~~~~~C~C~~g~~g~~c~  511 (604)
                      .|.+||.|+.|. ....|.   ..|..+|.|++    ..|.|.+||.|..|.
T Consensus       521 ~C~~gw~g~dc~-i~~~Cp---~~C~ghG~C~~----G~C~Cd~G~~G~~C~  564 (725)
T 2e26_A          521 DKQQTWAIDNVY-IGDGCL---DMCSGHGRCVQ----GSCVCDEQWGGLYCD  564 (725)
T ss_dssp             CTTCCEEEEEEE-EESCSS---GGGGGSEEEET----TEEEECTTEESTTSC
T ss_pred             ccCCCccccccc-ccCCCC---cccCCCcEECC----CCEeeCCCccCCCcC
Confidence            455555555552 234443   25555555543    155555555555554

>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET: NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A*

Probab=88.89  E-value=0.26  Score=58.36  Aligned_cols=43  Identities=26%  Similarity=0.797  Sum_probs=35.4

Q ss_pred             CCcCCCcCCCCCCCCCcEEEeCCCCeEEecC-CCCCCCCcccCC
Q psy15407        432 CEINIDDCLSHKCENNATCVDLIQAYECRCA-PGFQGEFCQTKT  474 (604)
Q Consensus       432 C~~~~~~C~~~~C~~~~~C~~~~~~~~C~C~-~g~~g~~C~~~~  474 (604)
                      |....+.|...||.++|+|+...++|.|.|+ +||.|..|+...
T Consensus      1013 C~~~~~~C~~~pC~ngG~C~~~~~~~~C~C~~~g~~G~~C~~~~ 1056 (1245)
T 3qcw_A         1013 CEGPSTTCQEDSCSNQGVCLQQWDGFSCDCSMTSFSGPLCNDPG 1056 (1245)
T ss_dssp             SSCCCCCCCTTSSSSSCEEEEETTEEEEECTTSSCBSTTSCBCC
T ss_pred             eecccCceECCcCCCCCEeCCCCCCCEEECCCCCCCCCCccCCC
Confidence            4444567888999999999998889999999 699999997544

>2wph_E Coagulation factor IXA light chain; serine protease, zymogen, hydrolase, glycoprotein, hydroxylation, phosphoprotein, sulfation, hemostasis; HET: DPN 1PE; 1.50A {Homo sapiens} PDB: 2wpi_E* 2wpj_E* 2wpk_E* 2wpl_E* 2wpm_E 3kcg_L* 3lc3_B* 1rfn_B* 3lc5_B*

Probab=88.68  E-value=0.34  Score=34.33  Aligned_cols=28  Identities=29%  Similarity=0.739  Sum_probs=20.1

Q ss_pred             CCCCCCEEeeCC-CCeEeeeCCCCc----cCCCCc
Q psy15407        521 MCQNGGTCVDGI-NDYTCKCEGDFV----GKFCEI  550 (604)
Q Consensus       521 ~C~~~~~C~~~~-~~y~C~C~~G~~----G~~C~~  550 (604)
                      .|++  .|++++ |+|+|.|++||.    |..|+.
T Consensus         8 gC~~--~C~n~~~gs~~C~C~~Gy~L~~D~~tC~d   40 (59)
T 2wph_E            8 RCEQ--FCKNSADNKVVCSCTEGYRLAENQKSCEP   40 (59)
T ss_dssp             GCSS--EEEECSTTCEEEECCTTEEECTTSSCEEE
T ss_pred             CcCC--EeEeCCCCCEEeeCCCCcEECCCCCcccC
Confidence            3554  688888 589999999986    455553

>2e26_A Reelin, reeler protein; signaling protein; HET: NAG BMA; 2.00A {Mus musculus} PDB: 3a7q_A*

Probab=88.62  E-value=0.055  Score=58.27  Aligned_cols=46  Identities=20%  Similarity=0.377  Sum_probs=34.4

Q ss_pred             eeCCCCccCCCCcCcccccCCCCCCCCCCCCCC-CCceeCCCCCCCeeeecCCCCcCCCCCCCc
Q psy15407        538 KCEGDFVGKFCEIAPFVAMMYPQTSPCQHHDCK-NGICFQPQGSNDYLCKCAPGYSGKESLLQQ  600 (604)
Q Consensus       538 ~C~~G~~G~~C~~~~~~~~~~~~~~~C~~~~C~-~g~C~~~~g~~~~~C~C~~G~~G~~C~~~~  600 (604)
                      .|.+||.|+.|..          ...|.. .|. +|.|++..      |+|.+||.|..|+...
T Consensus       521 ~C~~gw~g~dc~i----------~~~Cp~-~C~ghG~C~~G~------C~Cd~G~~G~~C~~~~  567 (725)
T 2e26_A          521 DKQQTWAIDNVYI----------GDGCLD-MCSGHGRCVQGS------CVCDEQWGGLYCDEPE  567 (725)
T ss_dssp             CTTCCEEEEEEEE----------ESCSSG-GGGGSEEEETTE------EEECTTEESTTSCEES
T ss_pred             ccCCCcccccccc----------cCCCCc-ccCCCcEECCCC------EeeCCCccCCCcCccC
Confidence            6899999999984          123443 343 46698744      9999999999998654

>1b9w_A Protein (merozoite surface protein 1); MSP-1, candidate malaria vaccine, surface antigen; 1.80A {Plasmodium cynomolgi} SCOP: g.3.11.4 g.3.11.4 PDB: 2npr_A

Probab=86.34  E-value=1.7  Score=33.25  Aligned_cols=67  Identities=24%  Similarity=0.464  Sum_probs=42.6

Q ss_pred             CCCCCCCCCcEEEeC-CCCeEEecCCCCC--CCCcccC-CCcCCCCCCCCCCCCceeecC-CCeEEecCCCC
Q psy15407        439 CLSHKCENNATCVDL-IQAYECRCAPGFQ--GEFCQTK-TPFCAGEYNPCRNGARCLDHF-SHYTCECTPGF  505 (604)
Q Consensus       439 C~~~~C~~~~~C~~~-~~~~~C~C~~g~~--g~~C~~~-~~~C~~~~~~C~~~~~C~~~~-~~~~C~C~~g~  505 (604)
                      |....|..++.|... .+.-.|.|..+|.  |..|..+ ...|....+.|...+.|.... ..-.|.|...+
T Consensus         7 C~~tkcp~NA~Cyr~~dg~EecRCllnykk~~~kCV~~~~~~C~~NNGGCd~nA~C~~~~~~kIvC~C~~~~   78 (95)
T 1b9w_A            7 CIDTNVPENAACYRYLDGTEEWRCLLYFKEDAGKCVPAPNMTCKDKNGGCAPEAECKMNDKNEIVCKCTKEG   78 (95)
T ss_dssp             CSSCCCCTTEEEEECTTSCEEEEECTTEEEETTEEEECTTCCTTTGGGGSCTTSEEEECTTSCEEEECCSTT
T ss_pred             cccCCCCCCcCeEEEcCCCEEEEEECCeEecCCEEEcCCCCCccccCCCcCCCcceeecCCCcEEEECCCCC
Confidence            444466777888764 4567788888886  5555433 235665566677777776555 45667777664

>2wph_E Coagulation factor IXA light chain; serine protease, zymogen, hydrolase, glycoprotein, hydroxylation, phosphoprotein, sulfation, hemostasis; HET: DPN 1PE; 1.50A {Homo sapiens} PDB: 2wpi_E* 2wpj_E* 2wpk_E* 2wpl_E* 2wpm_E 3kcg_L* 3lc3_B* 1rfn_B* 3lc5_B*

Probab=81.97  E-value=0.59  Score=33.06  Aligned_cols=28  Identities=25%  Similarity=0.770  Sum_probs=21.4

Q ss_pred             CCCCCCCceeecC-CCeEEecCCCCc----CCcCc
Q psy15407        482 NPCRNGARCLDHF-SHYTCECTPGFS----GVNCT  511 (604)
Q Consensus       482 ~~C~~~~~C~~~~-~~~~C~C~~g~~----g~~c~  511 (604)
                      +.|..  .|++.. ++|+|.|++||.    |..|.
T Consensus         7 ggC~~--~C~n~~~gs~~C~C~~Gy~L~~D~~tC~   39 (59)
T 2wph_E            7 GRCEQ--FCKNSADNKVVCSCTEGYRLAENQKSCE   39 (59)
T ss_dssp             GGCSS--EEEECSTTCEEEECCTTEEECTTSSCEE
T ss_pred             CCcCC--EeEeCCCCCEEeeCCCCcEECCCCCccc
Confidence            45653  699998 599999999996    45564

>1nzi_A Complement C1S component; calcium, innate immunity, modular structure, CUB, EGF, hydrolase; 1.50A {Homo sapiens} SCOP: b.23.1.1 g.3.11.1

Probab=81.39  E-value=0.48  Score=41.26  Aligned_cols=31  Identities=29%  Similarity=0.866  Sum_probs=21.3

Q ss_pred             cCCCcCCC---CCCCCCcEEEeCCCCeEEecCCCCC
Q psy15407        434 INIDDCLS---HKCENNATCVDLIQAYECRCAPGFQ  466 (604)
Q Consensus       434 ~~~~~C~~---~~C~~~~~C~~~~~~~~C~C~~g~~  466 (604)
                      .++++|..   .+|.  ..|.+..++|.|.|.+||.
T Consensus       115 ~d~~eC~~~~~~~C~--~~C~n~~g~~~C~C~~Gy~  148 (159)
T 1nzi_A          115 TDINECTDFVDVPCS--HFCNNFIGGYFCSCPPEYF  148 (159)
T ss_dssp             EECCTTTC-CCCCSS--SEEEEETTEEEEECCTTCE
T ss_pred             ccCcccCCCCCCCCC--CcccCcCCCEEEecCCCcE
Confidence            34566653   2453  4688888888888888887

>1b9w_A Protein (merozoite surface protein 1); MSP-1, candidate malaria vaccine, surface antigen; 1.80A {Plasmodium cynomolgi} SCOP: g.3.11.4 g.3.11.4 PDB: 2npr_A

Probab=80.24  E-value=4.6  Score=30.94  Aligned_cols=67  Identities=16%  Similarity=0.374  Sum_probs=47.8

Q ss_pred             CCCCCCCCCCeeeeCCCCceEeeCCCCCc--CCCCCcC-CCcCCC--CCCCCCcEEEeCC-CCeEEecCCCCC
Q psy15407        400 CYGNPCRNSGTCKLLEEGRFNCECAPGYT--GDRCEIN-IDDCLS--HKCENNATCVDLI-QAYECRCAPGFQ  466 (604)
Q Consensus       400 C~~~~C~~~~~C~~~~~~~~~C~C~~g~~--g~~C~~~-~~~C~~--~~C~~~~~C~~~~-~~~~C~C~~g~~  466 (604)
                      |....|+.++.|.....+.-.|.|..+|.  |..|..+ ...|..  +-|..++.|.... ..-.|+|...+.
T Consensus         7 C~~tkcp~NA~Cyr~~dg~EecRCllnykk~~~kCV~~~~~~C~~NNGGCd~nA~C~~~~~~kIvC~C~~~~~   79 (95)
T 1b9w_A            7 CIDTNVPENAACYRYLDGTEEWRCLLYFKEDAGKCVPAPNMTCKDKNGGCAPEAECKMNDKNEIVCKCTKEGS   79 (95)
T ss_dssp             CSSCCCCTTEEEEECTTSCEEEEECTTEEEETTEEEECTTCCTTTGGGGSCTTSEEEECTTSCEEEECCSTTE
T ss_pred             cccCCCCCCcCeEEEcCCCEEEEEECCeEecCCEEEcCCCCCccccCCCcCCCcceeecCCCcEEEECCCCCC
Confidence            44456777888887667778899999986  5566533 235653  4588889998776 678899988753

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	604
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	6e-22
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-21
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-10
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-04
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	4e-21
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-12
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-04
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	2e-10
d1edmb_	39	g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens	1e-09
d1edmb_	39	g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens	4e-09
d1edmb_	39	g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens	5e-07
d1edmb_	39	g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens	7e-07
d1edmb_	39	g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens	4e-05
d1edmb_	39	g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens	1e-04
d2vj3a2	39	g.3.11.1 (A:453-491) Neurogenic locus notch homolo	3e-09
d2vj3a2	39	g.3.11.1 (A:453-491) Neurogenic locus notch homolo	9e-09
d2vj3a2	39	g.3.11.1 (A:453-491) Neurogenic locus notch homolo	7e-08
d2vj3a2	39	g.3.11.1 (A:453-491) Neurogenic locus notch homolo	3e-07
d2vj3a2	39	g.3.11.1 (A:453-491) Neurogenic locus notch homolo	5e-05
d2vj3a2	39	g.3.11.1 (A:453-491) Neurogenic locus notch homolo	9e-05
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	1e-08
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	8e-08
d1xkba1	39	g.3.11.1 (A:48-86) Factor X, N-terminal module {Hu	1e-08
d1xkba1	39	g.3.11.1 (A:48-86) Factor X, N-terminal module {Hu	2e-08
d1xkba1	39	g.3.11.1 (A:48-86) Factor X, N-terminal module {Hu	5e-08
d1xkba1	39	g.3.11.1 (A:48-86) Factor X, N-terminal module {Hu	2e-07
d1xkba1	39	g.3.11.1 (A:48-86) Factor X, N-terminal module {Hu	4e-05
d1xkba1	39	g.3.11.1 (A:48-86) Factor X, N-terminal module {Hu	1e-04
d2c4fl1	37	g.3.11.1 (L:46-82) Factor IX (IXa) {Pig (Sus scrof	5e-08
d2c4fl1	37	g.3.11.1 (L:46-82) Factor IX (IXa) {Pig (Sus scrof	6e-08
d2c4fl1	37	g.3.11.1 (L:46-82) Factor IX (IXa) {Pig (Sus scrof	2e-06
d2c4fl1	37	g.3.11.1 (L:46-82) Factor IX (IXa) {Pig (Sus scrof	2e-06
d2c4fl1	37	g.3.11.1 (L:46-82) Factor IX (IXa) {Pig (Sus scrof	2e-04
d2c4fl1	37	g.3.11.1 (L:46-82) Factor IX (IXa) {Pig (Sus scrof	2e-04
d2vj3a3	35	g.3.11.1 (A:492-526) Neurogenic locus notch homolo	1e-07
d2vj3a3	35	g.3.11.1 (A:492-526) Neurogenic locus notch homolo	2e-07
d2vj3a3	35	g.3.11.1 (A:492-526) Neurogenic locus notch homolo	1e-06
d2vj3a3	35	g.3.11.1 (A:492-526) Neurogenic locus notch homolo	1e-05
d2vj3a3	35	g.3.11.1 (A:492-526) Neurogenic locus notch homolo	1e-04
d2vj3a3	35	g.3.11.1 (A:492-526) Neurogenic locus notch homolo	2e-04
d2vj3a1	42	g.3.11.1 (A:411-452) Neurogenic locus notch homolo	1e-07
d2vj3a1	42	g.3.11.1 (A:411-452) Neurogenic locus notch homolo	1e-06
d2vj3a1	42	g.3.11.1 (A:411-452) Neurogenic locus notch homolo	4e-06
d2vj3a1	42	g.3.11.1 (A:411-452) Neurogenic locus notch homolo	8e-06
d2vj3a1	42	g.3.11.1 (A:411-452) Neurogenic locus notch homolo	5e-04
d2vj3a1	42	g.3.11.1 (A:411-452) Neurogenic locus notch homolo	0.001
d1haea_	63	g.3.11.1 (A:) Heregulin-alpha, EGF-like domain {Hu	2e-07
d1haea_	63	g.3.11.1 (A:) Heregulin-alpha, EGF-like domain {Hu	2e-07
d1haea_	63	g.3.11.1 (A:) Heregulin-alpha, EGF-like domain {Hu	1e-06
d1haea_	63	g.3.11.1 (A:) Heregulin-alpha, EGF-like domain {Hu	3e-05
d1haea_	63	g.3.11.1 (A:) Heregulin-alpha, EGF-like domain {Hu	5e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	2e-07
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	2e-06
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	2e-05
d1k36a_	46	g.3.11.1 (A:) Epiregulin, EGF-domain {Human (Homo	3e-07
d1k36a_	46	g.3.11.1 (A:) Epiregulin, EGF-domain {Human (Homo	2e-04
d1nqlb_	48	g.3.11.1 (B:) Epidermal growth factor, EGF {Human	4e-07
d1nqlb_	48	g.3.11.1 (B:) Epidermal growth factor, EGF {Human	2e-06
d1nqlb_	48	g.3.11.1 (B:) Epidermal growth factor, EGF {Human	2e-04
d1nqlb_	48	g.3.11.1 (B:) Epidermal growth factor, EGF {Human	7e-04
d1nqlb_	48	g.3.11.1 (B:) Epidermal growth factor, EGF {Human	0.002
d1g1sa2	40	g.3.11.1 (A:119-158) E-selectin, EGF-domain {Human	6e-07
d1g1sa2	40	g.3.11.1 (A:119-158) E-selectin, EGF-domain {Human	1e-06
d1g1sa2	40	g.3.11.1 (A:119-158) E-selectin, EGF-domain {Human	7e-06
d1g1sa2	40	g.3.11.1 (A:119-158) E-selectin, EGF-domain {Human	1e-05
d1g1sa2	40	g.3.11.1 (A:119-158) E-selectin, EGF-domain {Human	9e-05
d1g1sa2	40	g.3.11.1 (A:119-158) E-selectin, EGF-domain {Human	6e-04
d1g1ta2	39	g.3.11.1 (A:119-157) E-selectin, EGF-domain {Human	7e-07
d1g1ta2	39	g.3.11.1 (A:119-157) E-selectin, EGF-domain {Human	7e-07
d1g1ta2	39	g.3.11.1 (A:119-157) E-selectin, EGF-domain {Human	3e-06
d1g1ta2	39	g.3.11.1 (A:119-157) E-selectin, EGF-domain {Human	4e-06
d1g1ta2	39	g.3.11.1 (A:119-157) E-selectin, EGF-domain {Human	1e-04
d1g1ta2	39	g.3.11.1 (A:119-157) E-selectin, EGF-domain {Human	9e-04
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	7e-07
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	4e-04
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	8e-07
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	9e-07
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	0.002
d3egfa_	53	g.3.11.1 (A:) Epidermal growth factor, EGF {Mouse	9e-07
d3egfa_	53	g.3.11.1 (A:) Epidermal growth factor, EGF {Mouse	6e-06
d3egfa_	53	g.3.11.1 (A:) Epidermal growth factor, EGF {Mouse	6e-05
d3egfa_	53	g.3.11.1 (A:) Epidermal growth factor, EGF {Mouse	3e-04
d3egfa_	53	g.3.11.1 (A:) Epidermal growth factor, EGF {Mouse	0.001
d3egfa_	53	g.3.11.1 (A:) Epidermal growth factor, EGF {Mouse	0.004
d1tpga1	41	g.3.11.1 (A:51-91) Plasminogen activator (tissue-t	1e-06
d1tpga1	41	g.3.11.1 (A:51-91) Plasminogen activator (tissue-t	6e-05
d1tpga1	41	g.3.11.1 (A:51-91) Plasminogen activator (tissue-t	3e-04
d1tpga1	41	g.3.11.1 (A:51-91) Plasminogen activator (tissue-t	4e-04
d1tpga1	41	g.3.11.1 (A:51-91) Plasminogen activator (tissue-t	7e-04
d1q4ga2	42	g.3.11.1 (A:32-73) Prostaglandin H2 synthase-1, EG	2e-06
d1q4ga2	42	g.3.11.1 (A:32-73) Prostaglandin H2 synthase-1, EG	4e-05
d1q4ga2	42	g.3.11.1 (A:32-73) Prostaglandin H2 synthase-1, EG	4e-05
d1q4ga2	42	g.3.11.1 (A:32-73) Prostaglandin H2 synthase-1, EG	3e-04
d1cvua2	41	g.3.11.1 (A:33-73) Prostaglandin H2 synthase-1, EG	2e-06
d1cvua2	41	g.3.11.1 (A:33-73) Prostaglandin H2 synthase-1, EG	4e-05
d1cvua2	41	g.3.11.1 (A:33-73) Prostaglandin H2 synthase-1, EG	1e-04
d1cvua2	41	g.3.11.1 (A:33-73) Prostaglandin H2 synthase-1, EG	8e-04
d1ioxa_	50	g.3.11.1 (A:) Betacellulin-2 {Human (Homo sapiens)	5e-06
d1ioxa_	50	g.3.11.1 (A:) Betacellulin-2 {Human (Homo sapiens)	3e-05
d1moxc_	49	g.3.11.1 (C:) Transforming growth factor alpha {Hu	1e-05
d1moxc_	49	g.3.11.1 (C:) Transforming growth factor alpha {Hu	5e-05
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	7e-05
d1autl1	48	g.3.11.1 (L:49-96) Activated protein c (autoprothr	9e-05
d1autl1	48	g.3.11.1 (L:49-96) Activated protein c (autoprothr	2e-04
d1autl1	48	g.3.11.1 (L:49-96) Activated protein c (autoprothr	0.001
d1autl1	48	g.3.11.1 (L:49-96) Activated protein c (autoprothr	0.002
d1autl1	48	g.3.11.1 (L:49-96) Activated protein c (autoprothr	0.004
d1kloa1	55	g.3.11.2 (A:11-65) Laminin gamma1 chain {Mouse (Mu	2e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	3e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	7e-04
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	0.003

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 94.1 bits (232), Expect = 6e-22
 Identities = 64/285 (22%), Positives = 101/285 (35%), Gaps = 31/285 (10%)

Query: 88  CPSGCSCDG---TRVDCSQRGLKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIK 144
           CP  C C         C Q+GL+ +P  IP  +  + L+ N I  +     F    NL  
Sbjct: 2   CPGACVCYNEPKVTTSCPQQGLQAVPVGIPAASQRIFLHGNRISHV-PAASFRACRNLTI 60

Query: 145 LDLRRNQVTGIEDNAFEGENDQGCLGDNYCPPKCTCTVRVLFYDGRAGECYIAVELFSSR 204
           L L  N +  I+  AF G      L  +      +         GR    ++        
Sbjct: 61  LWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLD---RCGL 117

Query: 205 IRVSYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLK 264
             +   +     +  Y  L +N +  L + TF  L  L+ L L  N++  +   A  GL 
Sbjct: 118 QELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLH 177

Query: 265 SLRIISLHGNDISMIPEGAFADLH------------------------AITHLAIGGNPL 300
           SL  + LH N ++ +   AF DL                         A+ +L +  NP 
Sbjct: 178 SLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPW 237

Query: 301 YCDCGLAWLSEWVKRDYVEPGIARCTEPASMRDKLLLTAPASSFQ 345
            CDC    L  W+++         C+ P  +  + L    A+  Q
Sbjct: 238 VCDCRARPLWAWLQKFRGSSSEVPCSLPQRLAGRDLKRLAANDLQ 282

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 93.9 bits (232), Expect = 1e-21
 Identities = 55/227 (24%), Positives = 92/227 (40%), Gaps = 19/227 (8%)

Query: 87  ACPSGCSCDGTRVDCSQRGLKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKLD 146
            CP  C C    V CS  GL+++PKD+P  T  L L +N+I +I  DG F  L NL  L 
Sbjct: 3   VCPFRCQCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEI-KDGDFKNLKNLHTLI 61

Query: 147 LRRNQVTGIEDNAFEGENDQGCLGDNYC-----PPKCTCTVRVLFYDGRAGECYIAVELF 201
           L  N+++ I   AF        L  +       P K   T++ L             E  
Sbjct: 62  LINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVH----------ENE 111

Query: 202 SSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALA 261
            +++R S + G   +  +    +  +   + N  F  + KLS + ++   +  I +    
Sbjct: 112 ITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGL-- 169

Query: 262 GLKSLRIISLHGNDISMIPEGAFADLHAITHLAIGGNPLYCDCGLAW 308
              SL  + L GN I+ +   +   L+ +  L +  N +      + 
Sbjct: 170 -PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSL 215

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 60.4 bits (145), Expect = 1e-10
 Identities = 37/232 (15%), Positives = 61/232 (26%), Gaps = 15/232 (6%)

Query: 174 CPPKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSN 233
           CP +C C +RV+                     +     + P  T   DL NN+I  + +
Sbjct: 4   CPFRCQCHLRVVQCSDL---------------GLEKVPKDLPPDTALLDLQNNKITEIKD 48

Query: 234 FTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHL 293
             F  L  L  LIL  NK+  I   A A L  L  + L  N +  +PE     L  +   
Sbjct: 49  GDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVH 108

Query: 294 AIGGNPLYCDCGLAWLSEWVKRDYVEPGIARCTEPASMRDKLLLTAPASSFQCKEKVSDE 353
                 +            V      P  +   E  + +    L+    +      +   
Sbjct: 109 ENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQG 168

Query: 354 ILSKCNACYKSPCTNQGVCEPLPERQYQCRCTPGYHGQHCEFMIDACYGNPC 405
           +       +        V     +                     +    P 
Sbjct: 169 LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPH 220

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 41.9 bits (97), Expect = 1e-04
 Identities = 27/174 (15%), Positives = 54/174 (31%), Gaps = 29/174 (16%)

Query: 122 LNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDNYCPPKCTCT 181
           + D  I  I      G  P+L +L L  N++T ++  + +G N+   LG ++        
Sbjct: 157 IADTNITTIPQ----GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDN 212

Query: 182 VRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSK 241
             +             + L ++++                 L NN I  + +  F P   
Sbjct: 213 GSLANT-----PHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGY 267

Query: 242 LSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISM--IPEGAFADLHAITHL 293
            ++                    S   +SL  N +    I    F  ++    +
Sbjct: 268 NTKK------------------ASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAV 303

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 91.3 bits (225), Expect = 4e-21
 Identities = 49/228 (21%), Positives = 82/228 (35%), Gaps = 9/228 (3%)

Query: 88  CPSGCSCDGTRVDCSQRGLKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDL 147
           C          V+C +R L  +P D+P  TT L L++N +    S         L +L+L
Sbjct: 4   CEVSKVASHLEVNCDKRNLTALPPDLPKDTTILHLSENLLYTF-SLATLMPYTRLTQLNL 62

Query: 148 RRNQVTGIEDNAFEGENDQGCLGDNYCPPKCTCTVRVLFYDGRAGECYIAVELFSSRIRV 207
            R ++T ++ +          L  N           +               L       
Sbjct: 63  DRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLP------ 116

Query: 208 SYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLR 267
                          L  N++  L     +P  KL +L L+ N L  +    L GL++L 
Sbjct: 117 -LGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLD 175

Query: 268 IISLHGNDISMIPEGAFADLHAITHLAIGGNPLYCDCGLAWLSEWVKR 315
            + L  N +  IP+G F   H +    + GNP  C+C + +   W++ 
Sbjct: 176 TLLLQENSLYTIPKGFF-GSHLLPFAFLHGNPWLCNCEILYFRRWLQD 222

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 67.7 bits (164), Expect = 1e-12
 Identities = 48/290 (16%), Positives = 89/290 (30%), Gaps = 25/290 (8%)

Query: 12  YTCKCEGDFVGKFCEIAPFVAMMYPQTSPCQHHDCKNGICFQPQGSNDYLCKCAPGYSGV 71
                +   +     +     +     +             Q     + +    P  +  
Sbjct: 116 TLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLT 175

Query: 72  EEFRTRYAGDCLIDAACPSGCSCDGTRVDCSQRGLKEIPKDIPLYTTELILNDNEIGKIK 131
              R   + + + D +  +  +   + +  + +     P  I     EL LN N++  I 
Sbjct: 176 TLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIG 235

Query: 132 SDGLFGRLPNLIKLDLRRNQVTGIEDNAFEG---ENDQGCLGDNYCPPKCTCTVRVLFYD 188
           +      L NL  LDL  NQ++ +   +      E   G    +   P    T       
Sbjct: 236 T---LASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLEL 292

Query: 189 GRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILS 248
                                   +   +  Y  L  N I  +S    S L+KL +L  +
Sbjct: 293 NENQLED-------------ISPISNLKNLTYLTLYFNNISDISPV--SSLTKLQRLFFA 337

Query: 249 YNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIGGN 298
            NK+  +   +LA L ++  +S   N IS +     A+L  IT L +   
Sbjct: 338 NNKVSDVS--SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 41.5 bits (96), Expect = 2e-04
 Identities = 18/176 (10%), Positives = 51/176 (28%), Gaps = 4/176 (2%)

Query: 235 TFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLA 294
           + + L +++ L      ++ ID   +  L +L  I+   N ++ I      +L  +  + 
Sbjct: 39  SQTDLDQVTTLQADRLGIKSID--GVEYLNNLTQINFSNNQLTDIT--PLKNLTKLVDIL 94

Query: 295 IGGNPLYCDCGLAWLSEWVKRDYVEPGIARCTEPASMRDKLLLTAPASSFQCKEKVSDEI 354
           +  N +     LA L+           I       ++ +   L   +++      +S   
Sbjct: 95  MNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLT 154

Query: 355 LSKCNACYKSPCTNQGVCEPLPERQYQCRCTPGYHGQHCEFMIDACYGNPCRNSGT 410
             +  +        + +       +                + +        N  +
Sbjct: 155 SLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQIS 210

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.8 bits (140), Expect = 2e-10
 Identities = 35/231 (15%), Positives = 62/231 (26%), Gaps = 26/231 (11%)

Query: 88  CPSG-CSCDGTRVDCSQRGLKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKLD 146
           C    C C      C +  + EIP D+P    EL     ++  I   G F    +L K++
Sbjct: 1   CHHRICHCSNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVI-QKGAFSGFGDLEKIE 59

Query: 147 L-RRNQVTGIEDNAFEGENDQGCLGDNYCPPKCTCTVRVLFYDGRAGECYIAVELFSSRI 205
           + + + +  IE + F        +                          I+        
Sbjct: 60  ISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLP 119

Query: 206 RVSYYVGNYPVSTMYR-----------------------DLSNNQIGFLSNFTFSPLSKL 242
            V        V    +                        L+ N I  + N  F+     
Sbjct: 120 DVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLD 179

Query: 243 SQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHL 293
              +   N L+ +  D   G     I+ +    I  +P     +L  +   
Sbjct: 180 ELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRAR 230

>d1edmb_ g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor IX (IXa)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.6 bits (124), Expect = 1e-09
 Identities = 19/39 (48%), Positives = 24/39 (61%)

Query: 512 VNVDDCVNHMCQNGGTCVDGINDYTCKCEGDFVGKFCEI 550
           V+ D C ++ C NGG+C D IN Y C C   F GK CE+
Sbjct: 1   VDGDQCESNPCLNGGSCKDDINSYECWCPFGFEGKNCEL 39

>d1edmb_ g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor IX (IXa)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.0 bits (120), Expect = 4e-09
 Identities = 16/38 (42%), Positives = 24/38 (63%)

Query: 434 INIDDCLSHKCENNATCVDLIQAYECRCAPGFQGEFCQ 471
           ++ D C S+ C N  +C D I +YEC C  GF+G+ C+
Sbjct: 1   VDGDQCESNPCLNGGSCKDDINSYECWCPFGFEGKNCE 38

>d1edmb_ g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor IX (IXa)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.3 bits (105), Expect = 5e-07
 Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 1/38 (2%)

Query: 397 IDACYGNPCRNSGTCKLLEEGRFNCECAPGYTGDRCEI 434
            D C  NPC N G+CK      + C C  G+ G  CE+
Sbjct: 3   GDQCESNPCLNGGSCKDDI-NSYECWCPFGFEGKNCEL 39

>d1edmb_ g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor IX (IXa)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.9 bits (104), Expect = 7e-07
 Identities = 15/29 (51%), Positives = 16/29 (55%)

Query: 482 NPCRNGARCLDHFSHYTCECTPGFSGVNC 510
           NPC NG  C D  + Y C C  GF G NC
Sbjct: 9   NPCLNGGSCKDDINSYECWCPFGFEGKNC 37

>d1edmb_ g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor IX (IXa)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.5 bits (90), Expect = 4e-05
 Identities = 15/27 (55%), Positives = 17/27 (62%)

Query: 1  NGGTCVDGINDYTCKCEGDFVGKFCEI 27
          NGG+C D IN Y C C   F GK CE+
Sbjct: 13 NGGSCKDDINSYECWCPFGFEGKNCEL 39

>d1edmb_ g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor IX (IXa)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.3 bits (87), Expect = 1e-04
 Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 1/36 (2%)

Query: 359 NACYKSPCTNQGVCEPLPERQYQCRCTPGYHGQHCE 394
           + C  +PC N G C+      Y+C C  G+ G++CE
Sbjct: 4   DQCESNPCLNGGSCKDDINS-YECWCPFGFEGKNCE 38

>d2vj3a2 g.3.11.1 (A:453-491) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Neurogenic locus notch homolog protein 1, Notch1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.8 bits (122), Expect = 3e-09
 Identities = 16/39 (41%), Positives = 29/39 (74%)

Query: 436 IDDCLSHKCENNATCVDLIQAYECRCAPGFQGEFCQTKT 474
           +++C+S+ C+N+ATC+D I  ++C C PG++G  C+  T
Sbjct: 1   VNECVSNPCQNDATCLDQIGEFQCICMPGYEGVHCEVNT 39

>d2vj3a2 g.3.11.1 (A:453-491) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Neurogenic locus notch homolog protein 1, Notch1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.3 bits (118), Expect = 9e-09
 Identities = 15/37 (40%), Positives = 24/37 (64%)

Query: 514 VDDCVNHMCQNGGTCVDGINDYTCKCEGDFVGKFCEI 550
           V++CV++ CQN  TC+D I ++ C C   + G  CE+
Sbjct: 1   VNECVSNPCQNDATCLDQIGEFQCICMPGYEGVHCEV 37

>d2vj3a2 g.3.11.1 (A:453-491) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Neurogenic locus notch homolog protein 1, Notch1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.6 bits (111), Expect = 7e-08
 Identities = 18/39 (46%), Positives = 22/39 (56%), Gaps = 1/39 (2%)

Query: 397 IDACYGNPCRNSGTCKLLEEGRFNCECAPGYTGDRCEIN 435
           ++ C  NPC+N  TC     G F C C PGY G  CE+N
Sbjct: 1   VNECVSNPCQNDATCLDQI-GEFQCICMPGYEGVHCEVN 38

>d2vj3a2 g.3.11.1 (A:453-491) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Neurogenic locus notch homolog protein 1, Notch1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.7 bits (106), Expect = 3e-07
 Identities = 17/32 (53%), Positives = 21/32 (65%)

Query: 482 NPCRNGARCLDHFSHYTCECTPGFSGVNCTVN 513
           NPC+N A CLD    + C C PG+ GV+C VN
Sbjct: 7   NPCQNDATCLDQIGEFQCICMPGYEGVHCEVN 38

>d2vj3a2 g.3.11.1 (A:453-491) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Neurogenic locus notch homolog protein 1, Notch1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.5 bits (90), Expect = 5e-05
 Identities = 10/27 (37%), Positives = 15/27 (55%)

Query: 1  NGGTCVDGINDYTCKCEGDFVGKFCEI 27
          N  TC+D I ++ C C   + G  CE+
Sbjct: 11 NDATCLDQIGEFQCICMPGYEGVHCEV 37

>d2vj3a2 g.3.11.1 (A:453-491) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Neurogenic locus notch homolog protein 1, Notch1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.7 bits (88), Expect = 9e-05
 Identities = 16/36 (44%), Positives = 18/36 (50%), Gaps = 1/36 (2%)

Query: 359 NACYKSPCTNQGVCEPLPERQYQCRCTPGYHGQHCE 394
           N C  +PC N   C       +QC C PGY G HCE
Sbjct: 2   NECVSNPCQNDATCLDQIGE-FQCICMPGYEGVHCE 36

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 52.9 bits (125), Expect = 1e-08
 Identities = 41/55 (74%), Positives = 50/55 (90%)

Query: 88  CPSGCSCDGTRVDCSQRGLKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNL 142
           CP+ C C+GT VDC+ RGLKEIP+DIPL+TTEL+LNDNE+G+I SDGLFGRLP+L
Sbjct: 2   CPAMCHCEGTTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHL 56

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 50.6 bits (119), Expect = 8e-08
 Identities = 35/100 (35%), Positives = 57/100 (57%)

Query: 249 YNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIGGNPLYCDCGLAW 308
            NK++ I      GL  L+ ++L+ N IS +  G+F  L+++T L +  NP  C+C LAW
Sbjct: 87  ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAW 146

Query: 309 LSEWVKRDYVEPGIARCTEPASMRDKLLLTAPASSFQCKE 348
            +EW+++  +  G ARC  P+ +RD  +   P S F+C  
Sbjct: 147 FAEWLRKKSLNGGAARCGAPSKVRDVQIKDLPHSEFKCSS 186

>d1xkba1 g.3.11.1 (A:48-86) Factor X, N-terminal module {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor X, N-terminal module
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.5 bits (116), Expect = 1e-08
 Identities = 18/36 (50%), Positives = 21/36 (58%)

Query: 515 DDCVNHMCQNGGTCVDGINDYTCKCEGDFVGKFCEI 550
           D C    CQN G C DG+ +YTC C   F GK CE+
Sbjct: 1   DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCEL 36

>d1xkba1 g.3.11.1 (A:48-86) Factor X, N-terminal module {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor X, N-terminal module
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.1 bits (115), Expect = 2e-08
 Identities = 14/38 (36%), Positives = 20/38 (52%)

Query: 437 DDCLSHKCENNATCVDLIQAYECRCAPGFQGEFCQTKT 474
           D C +  C+N   C D +  Y C C  GF+G+ C+  T
Sbjct: 1   DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFT 38

>d1xkba1 g.3.11.1 (A:48-86) Factor X, N-terminal module {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor X, N-terminal module
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.0 bits (112), Expect = 5e-08
 Identities = 14/33 (42%), Positives = 18/33 (54%)

Query: 482 NPCRNGARCLDHFSHYTCECTPGFSGVNCTVNV 514
           +PC+N  +C D    YTC C  GF G NC +  
Sbjct: 6   SPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFT 38

>d1xkba1 g.3.11.1 (A:48-86) Factor X, N-terminal module {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor X, N-terminal module
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.5 bits (108), Expect = 2e-07
 Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 1/38 (2%)

Query: 398 DACYGNPCRNSGTCKLLEEGRFNCECAPGYTGDRCEIN 435
           D C  +PC+N G CK    G + C C  G+ G  CE+ 
Sbjct: 1   DQCETSPCQNQGKCKDGL-GEYTCTCLEGFEGKNCELF 37

>d1xkba1 g.3.11.1 (A:48-86) Factor X, N-terminal module {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor X, N-terminal module
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.9 bits (91), Expect = 4e-05
 Identities = 14/27 (51%), Positives = 17/27 (62%)

Query: 1  NGGTCVDGINDYTCKCEGDFVGKFCEI 27
          N G C DG+ +YTC C   F GK CE+
Sbjct: 10 NQGKCKDGLGEYTCTCLEGFEGKNCEL 36

>d1xkba1 g.3.11.1 (A:48-86) Factor X, N-terminal module {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor X, N-terminal module
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.4 bits (87), Expect = 1e-04
 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 1/36 (2%)

Query: 359 NACYKSPCTNQGVCEPLPERQYQCRCTPGYHGQHCE 394
           + C  SPC NQG C+      Y C C  G+ G++CE
Sbjct: 1   DQCETSPCQNQGKCKDGLGE-YTCTCLEGFEGKNCE 35

>d2c4fl1 g.3.11.1 (L:46-82) Factor IX (IXa) {Pig (Sus scrofa) [TaxId: 9823]} Length = 37

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor IX (IXa)
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 47.0 bits (112), Expect = 5e-08
 Identities = 15/36 (41%), Positives = 21/36 (58%)

Query: 436 IDDCLSHKCENNATCVDLIQAYECRCAPGFQGEFCQ 471
            D C S  C+N  +C D +Q+Y C C P F+G  C+
Sbjct: 2   GDQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCE 37

>d2c4fl1 g.3.11.1 (L:46-82) Factor IX (IXa) {Pig (Sus scrofa) [TaxId: 9823]} Length = 37

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor IX (IXa)
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 46.6 bits (111), Expect = 6e-08
 Identities = 16/36 (44%), Positives = 20/36 (55%)

Query: 514 VDDCVNHMCQNGGTCVDGINDYTCKCEGDFVGKFCE 549
            D C +  CQNGG+C D +  Y C C   F G+ CE
Sbjct: 2   GDQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCE 37

>d2c4fl1 g.3.11.1 (L:46-82) Factor IX (IXa) {Pig (Sus scrofa) [TaxId: 9823]} Length = 37

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor IX (IXa)
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 42.4 bits (100), Expect = 2e-06
 Identities = 14/29 (48%), Positives = 16/29 (55%)

Query: 482 NPCRNGARCLDHFSHYTCECTPGFSGVNC 510
           +PC+NG  C D    Y C C P F G NC
Sbjct: 8   SPCQNGGSCKDQLQSYICFCLPAFEGRNC 36

>d2c4fl1 g.3.11.1 (L:46-82) Factor IX (IXa) {Pig (Sus scrofa) [TaxId: 9823]} Length = 37

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor IX (IXa)
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 42.4 bits (100), Expect = 2e-06
 Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 1/37 (2%)

Query: 397 IDACYGNPCRNSGTCKLLEEGRFNCECAPGYTGDRCE 433
            D C  +PC+N G+CK      + C C P + G  CE
Sbjct: 2   GDQCASSPCQNGGSCKDQL-QSYICFCLPAFEGRNCE 37

>d2c4fl1 g.3.11.1 (L:46-82) Factor IX (IXa) {Pig (Sus scrofa) [TaxId: 9823]} Length = 37

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor IX (IXa)
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 37.0 bits (86), Expect = 2e-04
 Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)

Query: 359 NACYKSPCTNQGVCEPLPERQYQCRCTPGYHGQHCE 394
           + C  SPC N G C+   +  Y C C P + G++CE
Sbjct: 3   DQCASSPCQNGGSCKDQLQS-YICFCLPAFEGRNCE 37

>d2c4fl1 g.3.11.1 (L:46-82) Factor IX (IXa) {Pig (Sus scrofa) [TaxId: 9823]} Length = 37

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor IX (IXa)
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 36.6 bits (85), Expect = 2e-04
 Identities = 12/26 (46%), Positives = 15/26 (57%)

Query: 1  NGGTCVDGINDYTCKCEGDFVGKFCE 26
          NGG+C D +  Y C C   F G+ CE
Sbjct: 12 NGGSCKDQLQSYICFCLPAFEGRNCE 37

>d2vj3a3 g.3.11.1 (A:492-526) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]} Length = 35

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Neurogenic locus notch homolog protein 1, Notch1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.8 bits (109), Expect = 1e-07
 Identities = 13/35 (37%), Positives = 21/35 (60%)

Query: 515 DDCVNHMCQNGGTCVDGINDYTCKCEGDFVGKFCE 549
           D+C +  C + G C+D IN++ C+C   F G  C+
Sbjct: 1   DECASSPCLHNGRCLDKINEFQCECPTGFTGHLCQ 35

>d2vj3a3 g.3.11.1 (A:492-526) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]} Length = 35

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Neurogenic locus notch homolog protein 1, Notch1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.4 bits (108), Expect = 2e-07
 Identities = 15/35 (42%), Positives = 20/35 (57%)

Query: 437 DDCLSHKCENNATCVDLIQAYECRCAPGFQGEFCQ 471
           D+C S  C +N  C+D I  ++C C  GF G  CQ
Sbjct: 1   DECASSPCLHNGRCLDKINEFQCECPTGFTGHLCQ 35

>d2vj3a3 g.3.11.1 (A:492-526) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]} Length = 35

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Neurogenic locus notch homolog protein 1, Notch1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.7 bits (101), Expect = 1e-06
 Identities = 13/29 (44%), Positives = 18/29 (62%)

Query: 482 NPCRNGARCLDHFSHYTCECTPGFSGVNC 510
           +PC +  RCLD  + + CEC  GF+G  C
Sbjct: 6   SPCLHNGRCLDKINEFQCECPTGFTGHLC 34

>d2vj3a3 g.3.11.1 (A:492-526) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]} Length = 35

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Neurogenic locus notch homolog protein 1, Notch1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.4 bits (95), Expect = 1e-05
 Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 1/36 (2%)

Query: 398 DACYGNPCRNSGTCKLLEEGRFNCECAPGYTGDRCE 433
           D C  +PC ++G C       F CEC  G+TG  C+
Sbjct: 1   DECASSPCLHNGRCLDKI-NEFQCECPTGFTGHLCQ 35

>d2vj3a3 g.3.11.1 (A:492-526) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]} Length = 35

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Neurogenic locus notch homolog protein 1, Notch1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.0 bits (86), Expect = 1e-04
 Identities = 12/36 (33%), Positives = 17/36 (47%), Gaps = 1/36 (2%)

Query: 359 NACYKSPCTNQGVCEPLPERQYQCRCTPGYHGQHCE 394
           + C  SPC + G C       +QC C  G+ G  C+
Sbjct: 1   DECASSPCLHNGRCLDKINE-FQCECPTGFTGHLCQ 35

>d2vj3a3 g.3.11.1 (A:492-526) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]} Length = 35

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Neurogenic locus notch homolog protein 1, Notch1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.6 bits (85), Expect = 2e-04
 Identities = 10/26 (38%), Positives = 16/26 (61%)

Query: 1  NGGTCVDGINDYTCKCEGDFVGKFCE 26
          + G C+D IN++ C+C   F G  C+
Sbjct: 10 HNGRCLDKINEFQCECPTGFTGHLCQ 35

>d2vj3a1 g.3.11.1 (A:411-452) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]} Length = 42

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Neurogenic locus notch homolog protein 1, Notch1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.9 bits (109), Expect = 1e-07
 Identities = 10/37 (27%), Positives = 21/37 (56%)

Query: 477 CAGEYNPCRNGARCLDHFSHYTCECTPGFSGVNCTVN 513
           C+   NPC +  +C++    + C+C  G++G  C ++
Sbjct: 6   CSLGANPCEHAGKCINTLGSFECQCLQGYTGPRCEID 42

>d2vj3a1 g.3.11.1 (A:411-452) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]} Length = 42

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Neurogenic locus notch homolog protein 1, Notch1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.6 bits (103), Expect = 1e-06
 Identities = 11/39 (28%), Positives = 24/39 (61%), Gaps = 2/39 (5%)

Query: 436 IDDCL--SHKCENNATCVDLIQAYECRCAPGFQGEFCQT 472
           +D+C   ++ CE+   C++ + ++EC+C  G+ G  C+ 
Sbjct: 3   VDECSLGANPCEHAGKCINTLGSFECQCLQGYTGPRCEI 41

>d2vj3a1 g.3.11.1 (A:411-452) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]} Length = 42

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Neurogenic locus notch homolog protein 1, Notch1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.6 bits (98), Expect = 4e-06
 Identities = 12/39 (30%), Positives = 22/39 (56%), Gaps = 2/39 (5%)

Query: 514 VDDC--VNHMCQNGGTCVDGINDYTCKCEGDFVGKFCEI 550
           VD+C    + C++ G C++ +  + C+C   + G  CEI
Sbjct: 3   VDECSLGANPCEHAGKCINTLGSFECQCLQGYTGPRCEI 41

>d2vj3a1 g.3.11.1 (A:411-452) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]} Length = 42

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Neurogenic locus notch homolog protein 1, Notch1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.9 bits (96), Expect = 8e-06
 Identities = 17/37 (45%), Positives = 22/37 (59%), Gaps = 1/37 (2%)

Query: 399 ACYGNPCRNSGTCKLLEEGRFNCECAPGYTGDRCEIN 435
           +   NPC ++G C     G F C+C  GYTG RCEI+
Sbjct: 7   SLGANPCEHAGKCINTL-GSFECQCLQGYTGPRCEID 42

>d2vj3a1 g.3.11.1 (A:411-452) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]} Length = 42

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Neurogenic locus notch homolog protein 1, Notch1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.9 bits (83), Expect = 5e-04
 Identities = 8/27 (29%), Positives = 15/27 (55%)

Query: 1  NGGTCVDGINDYTCKCEGDFVGKFCEI 27
          + G C++ +  + C+C   + G  CEI
Sbjct: 15 HAGKCINTLGSFECQCLQGYTGPRCEI 41

>d2vj3a1 g.3.11.1 (A:411-452) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]} Length = 42

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Neurogenic locus notch homolog protein 1, Notch1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.7 bits (80), Expect = 0.001
 Identities = 11/35 (31%), Positives = 17/35 (48%), Gaps = 1/35 (2%)

Query: 360 ACYKSPCTNQGVCEPLPERQYQCRCTPGYHGQHCE 394
           +   +PC + G C       ++C+C  GY G  CE
Sbjct: 7   SLGANPCEHAGKCINTLGS-FECQCLQGYTGPRCE 40

>d1haea_ g.3.11.1 (A:) Heregulin-alpha, EGF-like domain {Human (Homo sapiens) [TaxId: 9606]} Length = 63

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Heregulin-alpha, EGF-like domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.1 bits (109), Expect = 2e-07
 Identities = 14/54 (25%), Positives = 26/54 (48%), Gaps = 4/54 (7%)

Query: 397 IDACYGNPCRNSGTCKLLEE----GRFNCECAPGYTGDRCEINIDDCLSHKCEN 446
                   C N G C ++++     R+ C+C PG+TG RC  N+   + ++ + 
Sbjct: 6   CAEKEKTFCVNGGECFMVKDLSNPSRYLCKCQPGFTGARCTENVPMKVQNQEKA 59

>d1haea_ g.3.11.1 (A:) Heregulin-alpha, EGF-like domain {Human (Homo sapiens) [TaxId: 9606]} Length = 63

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Heregulin-alpha, EGF-like domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.1 bits (109), Expect = 2e-07
 Identities = 16/58 (27%), Positives = 24/58 (41%), Gaps = 4/58 (6%)

Query: 355 LSKCNACYKSPCTNQGVCEPLPE----RQYQCRCTPGYHGQHCEFMIDACYGNPCRNS 408
           L KC    K+ C N G C  + +     +Y C+C PG+ G  C   +     N  +  
Sbjct: 3   LVKCAEKEKTFCVNGGECFMVKDLSNPSRYLCKCQPGFTGARCTENVPMKVQNQEKAE 60

>d1haea_ g.3.11.1 (A:) Heregulin-alpha, EGF-like domain {Human (Homo sapiens) [TaxId: 9606]} Length = 63

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Heregulin-alpha, EGF-like domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.8 bits (103), Expect = 1e-06
 Identities = 12/49 (24%), Positives = 16/49 (32%), Gaps = 5/49 (10%)

Query: 434 INIDDCLSHKCENNATC-----VDLIQAYECRCAPGFQGEFCQTKTPFC 477
           +   +     C N   C     +     Y C+C PGF G  C    P  
Sbjct: 4   VKCAEKEKTFCVNGGECFMVKDLSNPSRYLCKCQPGFTGARCTENVPMK 52

>d1haea_ g.3.11.1 (A:) Heregulin-alpha, EGF-like domain {Human (Homo sapiens) [TaxId: 9606]} Length = 63

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Heregulin-alpha, EGF-like domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.0 bits (93), Expect = 3e-05
 Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 5/48 (10%)

Query: 482 NPCRNGARC-----LDHFSHYTCECTPGFSGVNCTVNVDDCVNHMCQN 524
             C NG  C     L + S Y C+C PGF+G  CT NV   V +  + 
Sbjct: 12  TFCVNGGECFMVKDLSNPSRYLCKCQPGFTGARCTENVPMKVQNQEKA 59

>d1haea_ g.3.11.1 (A:) Heregulin-alpha, EGF-like domain {Human (Homo sapiens) [TaxId: 9606]} Length = 63

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Heregulin-alpha, EGF-like domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.2 bits (91), Expect = 5e-05
 Identities = 13/56 (23%), Positives = 21/56 (37%), Gaps = 5/56 (8%)

Query: 512 VNVDDCVNHMCQNGGTC-----VDGINDYTCKCEGDFVGKFCEIAPFVAMMYPQTS 562
           V   +     C NGG C     +   + Y CKC+  F G  C     + +   + +
Sbjct: 4   VKCAEKEKTFCVNGGECFMVKDLSNPSRYLCKCQPGFTGARCTENVPMKVQNQEKA 59

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 47.8 bits (113), Expect = 2e-07
 Identities = 20/108 (18%), Positives = 37/108 (34%), Gaps = 26/108 (24%)

Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSL--------------- 266
            L++  +  L +     L  ++ L LS+N+L+     ALA L+ L               
Sbjct: 4   HLAHKDLTVLCHL--EQLLLVTHLDLSHNRLRA-LPPALAALRCLEVLQASDNALENVDG 60

Query: 267 -------RIISLHGNDISMIPE-GAFADLHAITHLAIGGNPLYCDCGL 306
                  + + L  N +              +  L + GN L  + G+
Sbjct: 61  VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGI 108

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 45.5 bits (107), Expect = 2e-06
 Identities = 18/154 (11%), Positives = 34/154 (22%), Gaps = 38/154 (24%)

Query: 120 LILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDNYCPPKCT 179
           L L   ++  +       +L  +  LDL  N++  +          +     +       
Sbjct: 3   LHLAHKDLTVLCH---LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD 59

Query: 180 CTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSNF-TFSP 238
                                                      L NN++   +       
Sbjct: 60  GV-------------------------------ANLPRLQELLLCNNRLQQSAAIQPLVS 88

Query: 239 LSKLSQLILSYNKLQCIDR---DALAGLKSLRII 269
             +L  L L  N L   +         L S+  I
Sbjct: 89  CPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI 122

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 42.0 bits (98), Expect = 2e-05
 Identities = 10/48 (20%), Positives = 19/48 (39%)

Query: 110 PKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIED 157
                    EL+L +N + +  +       P L+ L+L+ N +   E 
Sbjct: 60  GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG 107

>d1k36a_ g.3.11.1 (A:) Epiregulin, EGF-domain {Human (Homo sapiens) [TaxId: 9606]} Length = 46

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Epiregulin, EGF-domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.8 bits (106), Expect = 3e-07
 Identities = 12/43 (27%), Positives = 18/43 (41%)

Query: 355 LSKCNACYKSPCTNQGVCEPLPERQYQCRCTPGYHGQHCEFMI 397
           ++KC++     C +      +   Q  CRC  GY G  CE   
Sbjct: 3   ITKCSSDMNGYCLHGQCIYLVDMSQNYCRCEVGYTGVRCEHFF 45

>d1k36a_ g.3.11.1 (A:) Epiregulin, EGF-domain {Human (Homo sapiens) [TaxId: 9606]} Length = 46

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Epiregulin, EGF-domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.1 bits (86), Expect = 2e-04
 Identities = 11/36 (30%), Positives = 16/36 (44%)

Query: 398 DACYGNPCRNSGTCKLLEEGRFNCECAPGYTGDRCE 433
            +     C +     L++  +  C C  GYTG RCE
Sbjct: 7   SSDMNGYCLHGQCIYLVDMSQNYCRCEVGYTGVRCE 42

>d1nqlb_ g.3.11.1 (B:) Epidermal growth factor, EGF {Human (Homo sapiens) [TaxId: 9606]} Length = 48

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Epidermal growth factor, EGF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.9 bits (106), Expect = 4e-07
 Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 1/41 (2%)

Query: 356 SKCNACYKSPCTNQGVCEPLPE-RQYQCRCTPGYHGQHCEF 395
           S+C   +   C + GVC  +    +Y C C  GY G+ C++
Sbjct: 2   SECPLSHDGYCLHDGVCMYIEALDKYACNCVVGYIGERCQY 42

>d1nqlb_ g.3.11.1 (B:) Epidermal growth factor, EGF {Human (Homo sapiens) [TaxId: 9606]} Length = 48

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Epidermal growth factor, EGF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.6 bits (100), Expect = 2e-06
 Identities = 11/38 (28%), Positives = 18/38 (47%), Gaps = 1/38 (2%)

Query: 397 IDACYGNPCRNSGTCKLLEEG-RFNCECAPGYTGDRCE 433
               +   C + G C  +E   ++ C C  GY G+RC+
Sbjct: 4   CPLSHDGYCLHDGVCMYIEALDKYACNCVVGYIGERCQ 41

>d1nqlb_ g.3.11.1 (B:) Epidermal growth factor, EGF {Human (Homo sapiens) [TaxId: 9606]} Length = 48

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Epidermal growth factor, EGF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.5 bits (87), Expect = 2e-04
 Identities = 10/43 (23%), Positives = 18/43 (41%), Gaps = 2/43 (4%)

Query: 433 EINIDDCLSHKCENNATCVDL--IQAYECRCAPGFQGEFCQTK 473
           +          C ++  C+ +  +  Y C C  G+ GE CQ +
Sbjct: 1   DSECPLSHDGYCLHDGVCMYIEALDKYACNCVVGYIGERCQYR 43

>d1nqlb_ g.3.11.1 (B:) Epidermal growth factor, EGF {Human (Homo sapiens) [TaxId: 9606]} Length = 48

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Epidermal growth factor, EGF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.6 bits (82), Expect = 7e-04
 Identities = 8/39 (20%), Positives = 18/39 (46%), Gaps = 2/39 (5%)

Query: 515 DDCVNHMCQNGGTC--VDGINDYTCKCEGDFVGKFCEIA 551
               +  C + G C  ++ ++ Y C C   ++G+ C+  
Sbjct: 5   PLSHDGYCLHDGVCMYIEALDKYACNCVVGYIGERCQYR 43

>d1nqlb_ g.3.11.1 (B:) Epidermal growth factor, EGF {Human (Homo sapiens) [TaxId: 9606]} Length = 48

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Epidermal growth factor, EGF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.1 bits (78), Expect = 0.002
 Identities = 8/31 (25%), Positives = 12/31 (38%), Gaps = 2/31 (6%)

Query: 482 NPCRNGARC--LDHFSHYTCECTPGFSGVNC 510
             C +   C  ++    Y C C  G+ G  C
Sbjct: 10  GYCLHDGVCMYIEALDKYACNCVVGYIGERC 40

>d1g1sa2 g.3.11.1 (A:119-158) E-selectin, EGF-domain {Human (Homo sapiens) [TaxId: 9606]} Length = 40

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: E-selectin, EGF-domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.0 bits (104), Expect = 6e-07
 Identities = 13/35 (37%), Positives = 17/35 (48%)

Query: 515 DDCVNHMCQNGGTCVDGINDYTCKCEGDFVGKFCE 549
             C +  C   G C++ I +YTC C   F G  CE
Sbjct: 2   ASCQDMSCSKQGECLETIGNYTCSCYPGFYGPECE 36

>d1g1sa2 g.3.11.1 (A:119-158) E-selectin, EGF-domain {Human (Homo sapiens) [TaxId: 9606]} Length = 40

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: E-selectin, EGF-domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.2 bits (102), Expect = 1e-06
 Identities = 12/36 (33%), Positives = 15/36 (41%)

Query: 437 DDCLSHKCENNATCVDLIQAYECRCAPGFQGEFCQT 472
             C    C     C++ I  Y C C PGF G  C+ 
Sbjct: 2   ASCQDMSCSKQGECLETIGNYTCSCYPGFYGPECEY 37

>d1g1sa2 g.3.11.1 (A:119-158) E-selectin, EGF-domain {Human (Homo sapiens) [TaxId: 9606]} Length = 40

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: E-selectin, EGF-domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.9 bits (96), Expect = 7e-06
 Identities = 12/29 (41%), Positives = 14/29 (48%)

Query: 482 NPCRNGARCLDHFSHYTCECTPGFSGVNC 510
             C     CL+   +YTC C PGF G  C
Sbjct: 7   MSCSKQGECLETIGNYTCSCYPGFYGPEC 35

>d1g1sa2 g.3.11.1 (A:119-158) E-selectin, EGF-domain {Human (Homo sapiens) [TaxId: 9606]} Length = 40

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: E-selectin, EGF-domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.2 bits (94), Expect = 1e-05
 Identities = 12/40 (30%), Positives = 15/40 (37%), Gaps = 1/40 (2%)

Query: 398 DACYGNPCRNSGTCKLLEEGRFNCECAPGYTGDRCEINID 437
            +C    C   G C       + C C PG+ G  CE   D
Sbjct: 2   ASCQDMSCSKQGECLETIGN-YTCSCYPGFYGPECEYVRD 40

>d1g1sa2 g.3.11.1 (A:119-158) E-selectin, EGF-domain {Human (Homo sapiens) [TaxId: 9606]} Length = 40

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: E-selectin, EGF-domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.8 bits (88), Expect = 9e-05
 Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 1/40 (2%)

Query: 359 NACYKSPCTNQGVCEPLPERQYQCRCTPGYHGQHCEFMID 398
            +C    C+ QG C       Y C C PG++G  CE++ D
Sbjct: 2   ASCQDMSCSKQGECLETIG-NYTCSCYPGFYGPECEYVRD 40

>d1g1sa2 g.3.11.1 (A:119-158) E-selectin, EGF-domain {Human (Homo sapiens) [TaxId: 9606]} Length = 40

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: E-selectin, EGF-domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.5 bits (82), Expect = 6e-04
 Identities = 11/26 (42%), Positives = 14/26 (53%)

Query: 1  NGGTCVDGINDYTCKCEGDFVGKFCE 26
            G C++ I +YTC C   F G  CE
Sbjct: 11 KQGECLETIGNYTCSCYPGFYGPECE 36

>d1g1ta2 g.3.11.1 (A:119-157) E-selectin, EGF-domain {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: E-selectin, EGF-domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.0 bits (104), Expect = 7e-07
 Identities = 13/36 (36%), Positives = 18/36 (50%)

Query: 437 DDCLSHKCENNATCVDLIQAYECRCAPGFQGEFCQT 472
             C +  C  +  CV+ I  Y C+C PGF G  C+ 
Sbjct: 2   AACTNTSCSGHGECVETINNYTCKCDPGFSGLKCEQ 37

>d1g1ta2 g.3.11.1 (A:119-157) E-selectin, EGF-domain {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: E-selectin, EGF-domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.6 bits (103), Expect = 7e-07
 Identities = 17/35 (48%), Positives = 20/35 (57%)

Query: 515 DDCVNHMCQNGGTCVDGINDYTCKCEGDFVGKFCE 549
             C N  C   G CV+ IN+YTCKC+  F G  CE
Sbjct: 2   AACTNTSCSGHGECVETINNYTCKCDPGFSGLKCE 36

>d1g1ta2 g.3.11.1 (A:119-157) E-selectin, EGF-domain {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: E-selectin, EGF-domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.7 bits (98), Expect = 3e-06
 Identities = 13/33 (39%), Positives = 19/33 (57%)

Query: 482 NPCRNGARCLDHFSHYTCECTPGFSGVNCTVNV 514
             C     C++  ++YTC+C PGFSG+ C   V
Sbjct: 7   TSCSGHGECVETINNYTCKCDPGFSGLKCEQIV 39

>d1g1ta2 g.3.11.1 (A:119-157) E-selectin, EGF-domain {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: E-selectin, EGF-domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.7 bits (98), Expect = 4e-06
 Identities = 12/39 (30%), Positives = 18/39 (46%), Gaps = 1/39 (2%)

Query: 398 DACYGNPCRNSGTCKLLEEGRFNCECAPGYTGDRCEINI 436
            AC    C   G C       + C+C PG++G +CE  +
Sbjct: 2   AACTNTSCSGHGECVETINN-YTCKCDPGFSGLKCEQIV 39

>d1g1ta2 g.3.11.1 (A:119-157) E-selectin, EGF-domain {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: E-selectin, EGF-domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.1 bits (86), Expect = 1e-04
 Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 1/39 (2%)

Query: 359 NACYKSPCTNQGVCEPLPERQYQCRCTPGYHGQHCEFMI 397
            AC  + C+  G C       Y C+C PG+ G  CE ++
Sbjct: 2   AACTNTSCSGHGECVETINN-YTCKCDPGFSGLKCEQIV 39

>d1g1ta2 g.3.11.1 (A:119-157) E-selectin, EGF-domain {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: E-selectin, EGF-domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.1 bits (81), Expect = 9e-04
 Identities = 14/26 (53%), Positives = 17/26 (65%)

Query: 1  NGGTCVDGINDYTCKCEGDFVGKFCE 26
            G CV+ IN+YTCKC+  F G  CE
Sbjct: 11 GHGECVETINNYTCKCDPGFSGLKCE 36

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.1 bits (110), Expect = 7e-07
 Identities = 31/163 (19%), Positives = 50/163 (30%), Gaps = 14/163 (8%)

Query: 174 CPPKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSN 233
           CP  C           R G       L  +      Y+ N              +  L  
Sbjct: 1   CPDACCPHGSSGLRCTRDGALDSLHHLPGAENLTELYIEN-----------QQHLQHLEL 49

Query: 234 FTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHL 293
                L +L  L +  + L+ +  DA      L  ++L  N +  +         ++  L
Sbjct: 50  RDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTV-QGLSLQEL 108

Query: 294 AIGGNPLYCDCGLAWLSEWVKR--DYVEPGIARCTEPASMRDK 334
            + GNPL+C C L WL  W +     V     +C     +   
Sbjct: 109 VLSGNPLHCSCALRWLQRWEEEGLGGVPEQKLQCHGQGPLAHM 151

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.0 bits (89), Expect = 4e-04
 Identities = 13/70 (18%), Positives = 27/70 (38%), Gaps = 3/70 (4%)

Query: 88  CPSGCSCDG-TRVDCSQRGLKEIPKDIPLYT--TELILNDNEIGKIKSDGLFGRLPNLIK 144
           CP  C   G + + C++ G  +    +P     TEL + + +  +         L  L  
Sbjct: 1   CPDACCPHGSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRN 60

Query: 145 LDLRRNQVTG 154
           L + ++ +  
Sbjct: 61  LTIVKSGLRF 70

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 48.1 bits (113), Expect = 8e-07
 Identities = 33/166 (19%), Positives = 60/166 (36%), Gaps = 15/166 (9%)

Query: 118 TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAF----EGENDQGCLGDNY 173
            ++I N+++I  ++       LPN+ KL L  N++T I+  A                + 
Sbjct: 49  DQIIANNSDIKSVQG---IQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDL 105

Query: 174 CPPKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSN 233
              K    ++ L  +         +        +          T+   L+      L +
Sbjct: 106 SSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLED 165

Query: 234 FT------FSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHG 273
                    + L+KL  L LS N +  +   ALAGLK+L ++ L  
Sbjct: 166 NQISDIVPLAGLTKLQNLYLSKNHISDLR--ALAGLKNLDVLELFS 209

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.1 bits (111), Expect = 9e-07
 Identities = 18/84 (21%), Positives = 33/84 (39%), Gaps = 3/84 (3%)

Query: 223 LSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCID--RDALAGLKSLRIISLHGNDISMIP 280
             ++    L       + +L  L LS N+L  +D     +    +L+I++L GN++    
Sbjct: 49  RRSSMAATLRI-IEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSER 107

Query: 281 EGAFADLHAITHLAIGGNPLYCDC 304
           E        +  L + GN L    
Sbjct: 108 ELDKIKGLKLEELWLDGNSLSDTF 131

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.7 bits (84), Expect = 0.002
 Identities = 18/74 (24%), Positives = 27/74 (36%), Gaps = 2/74 (2%)

Query: 222 DLSNNQIGFLSNF--TFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMI 279
           +LSNN++  L +          L  L LS N+L+            L  + L GN +S  
Sbjct: 71  NLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDT 130

Query: 280 PEGAFADLHAITHL 293
                  + AI   
Sbjct: 131 FRDQSTYISAIRER 144

>d3egfa_ g.3.11.1 (A:) Epidermal growth factor, EGF {Mouse (Mus musculus) [TaxId: 10090]} Length = 53

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Epidermal growth factor, EGF
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 43.7 bits (103), Expect = 9e-07
 Identities = 14/41 (34%), Positives = 17/41 (41%), Gaps = 1/41 (2%)

Query: 356 SKCNACYKSPCTNQGVCEPLPE-RQYQCRCTPGYHGQHCEF 395
             C + Y   C N GVC  +     Y C C  GY G  C+ 
Sbjct: 4   PGCPSSYDGYCLNGGVCMHIESLDSYTCNCVIGYSGDRCQT 44

>d3egfa_ g.3.11.1 (A:) Epidermal growth factor, EGF {Mouse (Mus musculus) [TaxId: 10090]} Length = 53

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Epidermal growth factor, EGF
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 41.8 bits (98), Expect = 6e-06
 Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 1/38 (2%)

Query: 398 DACYGNPCRNSGTCKLLEE-GRFNCECAPGYTGDRCEI 434
            + Y   C N G C  +E    + C C  GY+GDRC+ 
Sbjct: 7   PSSYDGYCLNGGVCMHIESLDSYTCNCVIGYSGDRCQT 44

>d3egfa_ g.3.11.1 (A:) Epidermal growth factor, EGF {Mouse (Mus musculus) [TaxId: 10090]} Length = 53

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Epidermal growth factor, EGF
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.7 bits (90), Expect = 6e-05
 Identities = 12/44 (27%), Positives = 19/44 (43%), Gaps = 2/44 (4%)

Query: 509 NCTVNVDDCVNHMCQNGGTC--VDGINDYTCKCEGDFVGKFCEI 550
           N         +  C NGG C  ++ ++ YTC C   + G  C+ 
Sbjct: 1   NSYPGCPSSYDGYCLNGGVCMHIESLDSYTCNCVIGYSGDRCQT 44

>d3egfa_ g.3.11.1 (A:) Epidermal growth factor, EGF {Mouse (Mus musculus) [TaxId: 10090]} Length = 53

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Epidermal growth factor, EGF
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.8 bits (85), Expect = 3e-04
 Identities = 11/45 (24%), Positives = 18/45 (40%), Gaps = 2/45 (4%)

Query: 432 CEINIDDCLSHKCENNATCVDL--IQAYECRCAPGFQGEFCQTKT 474
                       C N   C+ +  + +Y C C  G+ G+ CQT+ 
Sbjct: 2   SYPGCPSSYDGYCLNGGVCMHIESLDSYTCNCVIGYSGDRCQTRD 46

>d3egfa_ g.3.11.1 (A:) Epidermal growth factor, EGF {Mouse (Mus musculus) [TaxId: 10090]} Length = 53

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Epidermal growth factor, EGF
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 35.2 bits (81), Expect = 0.001
 Identities = 12/31 (38%), Positives = 15/31 (48%), Gaps = 2/31 (6%)

Query: 482 NPCRNGARC--LDHFSHYTCECTPGFSGVNC 510
             C NG  C  ++    YTC C  G+SG  C
Sbjct: 12  GYCLNGGVCMHIESLDSYTCNCVIGYSGDRC 42

>d3egfa_ g.3.11.1 (A:) Epidermal growth factor, EGF {Mouse (Mus musculus) [TaxId: 10090]} Length = 53

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Epidermal growth factor, EGF
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 33.7 bits (77), Expect = 0.004
 Identities = 13/38 (34%), Positives = 16/38 (42%), Gaps = 1/38 (2%)

Query: 558 YPQTSPCQHHDCKN-GICFQPQGSNDYLCKCAPGYSGK 594
           YP         C N G+C   +  + Y C C  GYSG 
Sbjct: 3   YPGCPSSYDGYCLNGGVCMHIESLDSYTCNCVIGYSGD 40

>d1tpga1 g.3.11.1 (A:51-91) Plasminogen activator (tissue-type), t-PA {Human (Homo sapiens) [TaxId: 9606]} Length = 41

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Plasminogen activator (tissue-type), t-PA
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.9 bits (101), Expect = 1e-06
 Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 1/39 (2%)

Query: 400 CYGNPCRNSGTCK-LLEEGRFNCECAPGYTGDRCEINID 437
           C    C N GTC+  L    F C+C  G+ G  CEI+  
Sbjct: 1   CSEPRCFNGGTCQQALYFSDFVCQCPEGFAGKSCEIDTR 39

>d1tpga1 g.3.11.1 (A:51-91) Plasminogen activator (tissue-type), t-PA {Human (Homo sapiens) [TaxId: 9606]} Length = 41

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Plasminogen activator (tissue-type), t-PA
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.3 bits (89), Expect = 6e-05
 Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 2/36 (5%)

Query: 482 NPCRNGARCLD--HFSHYTCECTPGFSGVNCTVNVD 515
             C NG  C    +FS + C+C  GF+G +C ++  
Sbjct: 4   PRCFNGGTCQQALYFSDFVCQCPEGFAGKSCEIDTR 39

>d1tpga1 g.3.11.1 (A:51-91) Plasminogen activator (tissue-type), t-PA {Human (Homo sapiens) [TaxId: 9606]} Length = 41

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Plasminogen activator (tissue-type), t-PA
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.4 bits (84), Expect = 3e-04
 Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 2/36 (5%)

Query: 517 CVNHMCQNGGTCVDGI--NDYTCKCEGDFVGKFCEI 550
           C    C NGGTC   +  +D+ C+C   F GK CEI
Sbjct: 1   CSEPRCFNGGTCQQALYFSDFVCQCPEGFAGKSCEI 36

>d1tpga1 g.3.11.1 (A:51-91) Plasminogen activator (tissue-type), t-PA {Human (Homo sapiens) [TaxId: 9606]} Length = 41

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Plasminogen activator (tissue-type), t-PA
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.0 bits (83), Expect = 4e-04
 Identities = 12/38 (31%), Positives = 18/38 (47%), Gaps = 2/38 (5%)

Query: 439 CLSHKCENNATCVDLIQA--YECRCAPGFQGEFCQTKT 474
           C   +C N  TC   +    + C+C  GF G+ C+  T
Sbjct: 1   CSEPRCFNGGTCQQALYFSDFVCQCPEGFAGKSCEIDT 38

>d1tpga1 g.3.11.1 (A:51-91) Plasminogen activator (tissue-type), t-PA {Human (Homo sapiens) [TaxId: 9606]} Length = 41

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Plasminogen activator (tissue-type), t-PA
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.2 bits (81), Expect = 7e-04
 Identities = 12/40 (30%), Positives = 18/40 (45%), Gaps = 1/40 (2%)

Query: 361 CYKSPCTNQGVCEPLPER-QYQCRCTPGYHGQHCEFMIDA 399
           C +  C N G C+       + C+C  G+ G+ CE    A
Sbjct: 1   CSEPRCFNGGTCQQALYFSDFVCQCPEGFAGKSCEIDTRA 40

>d1q4ga2 g.3.11.1 (A:32-73) Prostaglandin H2 synthase-1, EGF-like module {Sheep (Ovis aries) [TaxId: 9940]} Length = 42

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Prostaglandin H2 synthase-1, EGF-like module
species: Sheep (Ovis aries) [TaxId: 9940]

 Score = 42.5 bits (100), Expect = 2e-06
 Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 1/39 (2%)

Query: 397 IDACYGNPCRNSGTCKLLEEGRFNCECAP-GYTGDRCEI 434
           ++ C   PC++ G C      R+ C+C   GY+G  C I
Sbjct: 2   VNPCCYYPCQHQGICVRFGLDRYQCDCTRTGYSGPNCTI 40

>d1q4ga2 g.3.11.1 (A:32-73) Prostaglandin H2 synthase-1, EGF-like module {Sheep (Ovis aries) [TaxId: 9940]} Length = 42

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Prostaglandin H2 synthase-1, EGF-like module
species: Sheep (Ovis aries) [TaxId: 9940]

 Score = 39.0 bits (91), Expect = 4e-05
 Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 2/39 (5%)

Query: 514 VDDCVNHMCQNGGTCVD-GINDYTCKCEGD-FVGKFCEI 550
           V+ C  + CQ+ G CV  G++ Y C C    + G  C I
Sbjct: 2   VNPCCYYPCQHQGICVRFGLDRYQCDCTRTGYSGPNCTI 40

>d1q4ga2 g.3.11.1 (A:32-73) Prostaglandin H2 synthase-1, EGF-like module {Sheep (Ovis aries) [TaxId: 9940]} Length = 42

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Prostaglandin H2 synthase-1, EGF-like module
species: Sheep (Ovis aries) [TaxId: 9940]

 Score = 38.7 bits (90), Expect = 4e-05
 Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 1/37 (2%)

Query: 359 NACYKSPCTNQGVCEPLPERQYQCRCTP-GYHGQHCE 394
           N C   PC +QG+C      +YQC CT  GY G +C 
Sbjct: 3   NPCCYYPCQHQGICVRFGLDRYQCDCTRTGYSGPNCT 39

>d1q4ga2 g.3.11.1 (A:32-73) Prostaglandin H2 synthase-1, EGF-like module {Sheep (Ovis aries) [TaxId: 9940]} Length = 42

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Prostaglandin H2 synthase-1, EGF-like module
species: Sheep (Ovis aries) [TaxId: 9940]

 Score = 36.7 bits (85), Expect = 3e-04
 Identities = 10/39 (25%), Positives = 18/39 (46%), Gaps = 2/39 (5%)

Query: 436 IDDCLSHKCENNATCVDL-IQAYECRCAP-GFQGEFCQT 472
           ++ C  + C++   CV   +  Y+C C   G+ G  C  
Sbjct: 2   VNPCCYYPCQHQGICVRFGLDRYQCDCTRTGYSGPNCTI 40

>d1cvua2 g.3.11.1 (A:33-73) Prostaglandin H2 synthase-1, EGF-like module {Mouse (Mus musculus) [TaxId: 10090]} Length = 41

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Prostaglandin H2 synthase-1, EGF-like module
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 42.5 bits (100), Expect = 2e-06
 Identities = 12/38 (31%), Positives = 19/38 (50%), Gaps = 1/38 (2%)

Query: 398 DACYGNPCRNSGTCKLLEEGRFNCEC-APGYTGDRCEI 434
           + C  NPC+N G C      ++ C+C   G+ G+ C  
Sbjct: 2   NPCCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENCTT 39

>d1cvua2 g.3.11.1 (A:33-73) Prostaglandin H2 synthase-1, EGF-like module {Mouse (Mus musculus) [TaxId: 10090]} Length = 41

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Prostaglandin H2 synthase-1, EGF-like module
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 39.0 bits (91), Expect = 4e-05
 Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 1/37 (2%)

Query: 359 NACYKSPCTNQGVCEPLPERQYQCRCT-PGYHGQHCE 394
           N C  +PC N+G C      QY+C CT  G++G++C 
Sbjct: 2   NPCCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENCT 38

>d1cvua2 g.3.11.1 (A:33-73) Prostaglandin H2 synthase-1, EGF-like module {Mouse (Mus musculus) [TaxId: 10090]} Length = 41

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Prostaglandin H2 synthase-1, EGF-like module
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.5 bits (87), Expect = 1e-04
 Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 2/38 (5%)

Query: 515 DDCVNHMCQNGGTCVD-GINDYTCKCEGD-FVGKFCEI 550
           + C ++ CQN G C+  G + Y C C    F G+ C  
Sbjct: 2   NPCCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENCTT 39

>d1cvua2 g.3.11.1 (A:33-73) Prostaglandin H2 synthase-1, EGF-like module {Mouse (Mus musculus) [TaxId: 10090]} Length = 41

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Prostaglandin H2 synthase-1, EGF-like module
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 35.2 bits (81), Expect = 8e-04
 Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 2/38 (5%)

Query: 437 DDCLSHKCENNATCVDL-IQAYECRC-APGFQGEFCQT 472
           + C S+ C+N   C+      Y+C C   GF GE C T
Sbjct: 2   NPCCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENCTT 39

>d1ioxa_ g.3.11.1 (A:) Betacellulin-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 50

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Betacellulin-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.7 bits (98), Expect = 5e-06
 Identities = 13/40 (32%), Positives = 16/40 (40%)

Query: 356 SKCNACYKSPCTNQGVCEPLPERQYQCRCTPGYHGQHCEF 395
           S+C   YK  C        + E+   C C  GY G  CE 
Sbjct: 6   SRCPKQYKHYCIKGRCRFVVAEQTPSCVCDEGYIGARCER 45

>d1ioxa_ g.3.11.1 (A:) Betacellulin-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 50

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Betacellulin-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.4 bits (92), Expect = 3e-05
 Identities = 11/34 (32%), Positives = 15/34 (44%)

Query: 400 CYGNPCRNSGTCKLLEEGRFNCECAPGYTGDRCE 433
            Y + C       ++ E   +C C  GY G RCE
Sbjct: 11  QYKHYCIKGRCRFVVAEQTPSCVCDEGYIGARCE 44

>d1moxc_ g.3.11.1 (C:) Transforming growth factor alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 49

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Transforming growth factor alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.6 bits (95), Expect = 1e-05
 Identities = 10/41 (24%), Positives = 15/41 (36%)

Query: 355 LSKCNACYKSPCTNQGVCEPLPERQYQCRCTPGYHGQHCEF 395
            + C   +   C +      + E +  C C  GY G  CE 
Sbjct: 4   FNDCPDSHTQFCFHGTCRFLVQEDKPACVCHSGYVGARCEH 44

>d1moxc_ g.3.11.1 (C:) Transforming growth factor alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 49

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Transforming growth factor alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.0 bits (91), Expect = 5e-05
 Identities = 11/34 (32%), Positives = 16/34 (47%)

Query: 400 CYGNPCRNSGTCKLLEEGRFNCECAPGYTGDRCE 433
            +   C +     L++E +  C C  GY G RCE
Sbjct: 10  SHTQFCFHGTCRFLVQEDKPACVCHSGYVGARCE 43

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 42.3 bits (98), Expect = 7e-05
 Identities = 35/186 (18%), Positives = 55/186 (29%), Gaps = 17/186 (9%)

Query: 118 TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDNYCPPK 177
           T L      +  I+       L NLI L+L+ NQ+T +       +  +  L  N     
Sbjct: 44  TTLSAFGTGVTTIEG---VQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNV 100

Query: 178 CTCTVRVLFYDGRAGECYIAVELF----------SSRIRVSYYVGNYPVSTMYRDLSNNQ 227
                             I                  +     +      T  + LS   
Sbjct: 101 SAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGN 160

Query: 228 IGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADL 287
                    + LSKL+ L    NK+  I    LA L +L  + L  N IS +     A+ 
Sbjct: 161 AQVSDLTPLANLSKLTTLKADDNKISDIS--PLASLPNLIEVHLKNNQISDVSP--LANT 216

Query: 288 HAITHL 293
             +  +
Sbjct: 217 SNLFIV 222

>d1autl1 g.3.11.1 (L:49-96) Activated protein c (autoprothrombin IIa) {Human (Homo sapiens) [TaxId: 9606]} Length = 48

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Activated protein c (autoprothrombin IIa)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.3 bits (89), Expect = 9e-05
 Identities = 12/42 (28%), Positives = 19/42 (45%), Gaps = 2/42 (4%)

Query: 396 MIDACYGNPCRNSGTCKLLEEGRFNCECAPGYTGDRCEINID 437
           +   C    C + GTC     G F+C+C  G+ G  C+  + 
Sbjct: 7   LEHPCASLCCGH-GTCIDGI-GSFSCDCRSGWEGRFCQREVS 46

>d1autl1 g.3.11.1 (L:49-96) Activated protein c (autoprothrombin IIa) {Human (Homo sapiens) [TaxId: 9606]} Length = 48

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Activated protein c (autoprothrombin IIa)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.1 bits (86), Expect = 2e-04
 Identities = 11/46 (23%), Positives = 17/46 (36%), Gaps = 1/46 (2%)

Query: 470 CQTKTPFCAGEYNPCRNGARCLDHFSHYTCECTPGFSGVNCTVNVD 515
           C             C +G  C+D    ++C+C  G+ G  C   V 
Sbjct: 2   CLVLPLEHPCASLCCGHG-TCIDGIGSFSCDCRSGWEGRFCQREVS 46

>d1autl1 g.3.11.1 (L:49-96) Activated protein c (autoprothrombin IIa) {Human (Homo sapiens) [TaxId: 9606]} Length = 48

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Activated protein c (autoprothrombin IIa)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.2 bits (81), Expect = 0.001
 Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 3/44 (6%)

Query: 431 RCEIN--IDDCLSHKCENNATCVDLIQAYECRCAPGFQGEFCQT 472
           +C +      C S  C +  TC+D I ++ C C  G++G FCQ 
Sbjct: 1   QCLVLPLEHPCASLCCGH-GTCIDGIGSFSCDCRSGWEGRFCQR 43

>d1autl1 g.3.11.1 (L:49-96) Activated protein c (autoprothrombin IIa) {Human (Homo sapiens) [TaxId: 9606]} Length = 48

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Activated protein c (autoprothrombin IIa)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.4 bits (79), Expect = 0.002
 Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 1/37 (2%)

Query: 514 VDDCVNHMCQNGGTCVDGINDYTCKCEGDFVGKFCEI 550
              C +  C +G TC+DGI  ++C C   + G+FC+ 
Sbjct: 8   EHPCASLCCGHG-TCIDGIGSFSCDCRSGWEGRFCQR 43

>d1autl1 g.3.11.1 (L:49-96) Activated protein c (autoprothrombin IIa) {Human (Homo sapiens) [TaxId: 9606]} Length = 48

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Activated protein c (autoprothrombin IIa)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.6 bits (77), Expect = 0.004
 Identities = 10/46 (21%), Positives = 18/46 (39%), Gaps = 2/46 (4%)

Query: 353 EILSKCNACYKSPCTNQGVCEPLPERQYQCRCTPGYHGQHCEFMID 398
            +L   + C    C + G C       + C C  G+ G+ C+  + 
Sbjct: 3   LVLPLEHPCASLCCGH-GTCIDGIGS-FSCDCRSGWEGRFCQREVS 46

>d1kloa1 g.3.11.2 (A:11-65) Laminin gamma1 chain {Mouse (Mus musculus) [TaxId: 10090]} Length = 55

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: Laminin-type module
domain: Laminin gamma1 chain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.6 bits (87), Expect = 2e-04
 Identities = 13/50 (26%), Positives = 22/50 (44%), Gaps = 2/50 (4%)

Query: 365 PCTNQGVCEPLPERQYQ--CRCTPGYHGQHCEFMIDACYGNPCRNSGTCK 412
           PC     C  +P+ +      C  G  G+ CE   D  +G+P  ++G  +
Sbjct: 2   PCPGGSSCAIVPKTKEVVCTHCPTGTAGKRCELCDDGYFGDPLGSNGPVR 51

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.1 bits (94), Expect = 3e-04
 Identities = 37/388 (9%), Positives = 78/388 (20%), Gaps = 14/388 (3%)

Query: 222 DLSNNQIGFLSNFTFSP-LSKLSQLILSYNKLQCID----RDALAGLKSLRIISLHGNDI 276
           D+   ++         P L +   + L    L          AL    +L  ++L  N++
Sbjct: 8   DIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNEL 67

Query: 277 S-----MIPEGAFADLHAITHLAIGGNPLYCDCGLAWLSEWVKRDYVEPGIARCTEPASM 331
                  + +G       I  L++    L         S       ++            
Sbjct: 68  GDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDA 127

Query: 332 RDKLLLTAPASSFQCKEKVSDEILSKCNACYKSPCTNQGVCEPLPERQYQCRCTPGYHGQ 391
             +LL           EK+  E  S   A  +   +         E             +
Sbjct: 128 GLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVR 187

Query: 392 HCEFMIDACYGNPCRNSGTCKLLEEGRFNCECAPGYTGDRCEINIDDCLSHKCENNATCV 451
                +                   G  +  C         + ++ +      +     +
Sbjct: 188 VLCQGLKDSPCQLEALKLESC----GVTSDNCRDLCGIVASKASLRELALGSNKLGDVGM 243

Query: 452 DLIQAYECRCAPGFQGEFCQTKTPFCAGEYNPCRNGARCLDHFSHYTCECTPGFSGVNCT 511
             +       +   +  +         G  + CR                  G  G    
Sbjct: 244 AELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLL 303

Query: 512 VNVDDCVNHMCQNGGTCVDGINDYTCKCEGDFVGKFCEIAPFVAMMYPQTSPCQHHDCKN 571
                      ++            C      + +   +                  C+ 
Sbjct: 304 CETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQG 363

Query: 572 GICFQPQGSNDYLCKCAPGYSGKESLLQ 599
                      +L  C    S   SL  
Sbjct: 364 LGQPGSVLRVLWLADCDVSDSSCSSLAA 391

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 41.0 bits (94), Expect = 3e-04
 Identities = 16/82 (19%), Positives = 25/82 (30%), Gaps = 8/82 (9%)

Query: 219 MYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISM 278
                  N               L +L +S NKL  +     A    L  +    N ++ 
Sbjct: 263 PPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELP----ALPPRLERLIASFNHLAE 318

Query: 279 IPEGAFADLHAITHLAIGGNPL 300
           +PE        +  L +  NPL
Sbjct: 319 VPE----LPQNLKQLHVEYNPL 336

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 39.8 bits (91), Expect = 7e-04
 Identities = 13/60 (21%), Positives = 28/60 (46%), Gaps = 8/60 (13%)

Query: 222 DLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPE 281
           ++SNN++  L         +L +LI S+N L  +        ++L+ + +  N +   P+
Sbjct: 290 NVSNNKLIELPAL----PPRLERLIASFNHLAEVPEL----PQNLKQLHVEYNPLREFPD 341

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.8 bits (84), Expect = 0.003
 Identities = 22/140 (15%), Positives = 34/140 (24%), Gaps = 3/140 (2%)

Query: 247 LSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIGGNPLYCDCGL 306
           L+   ++             R + L G  I +I E   A L     +    N +    G 
Sbjct: 3   LTAELIE--QAAQYTNAVRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIRKLDGF 59

Query: 307 AWLSEWVKRDYVEPGIARCTEPASMRDKLLLTAPASSFQCKEKVSDEILSKCNACYKSPC 366
             L            I R  E        L     ++    E    + L+   +      
Sbjct: 60  PLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCI 119

Query: 367 TNQGVCEPLPERQYQCRCTP 386
               V      R Y     P
Sbjct: 120 LRNPVTNKKHYRLYVIYKVP 139

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	604
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	100.0
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	100.0
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.97
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.93
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.88
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.87
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.79
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.75
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.74
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.72
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.71
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.7
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.69
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.67
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.67
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.66
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.64
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.63
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.63
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.62
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.55
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.55
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.55
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.54
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.53
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.5
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.43
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.36
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.34
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.3
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	98.93
d1edmb_	39	Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606	98.93
d2vj3a2	39	Neurogenic locus notch homolog protein 1, Notch1 {	98.89
d2c4fl1	37	Factor IX (IXa) {Pig (Sus scrofa) [TaxId: 9823]}	98.87
d2vj3a1	42	Neurogenic locus notch homolog protein 1, Notch1 {	98.84
d2vj3a3	35	Neurogenic locus notch homolog protein 1, Notch1 {	98.79
d1edmb_	39	Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606	98.78
d2vj3a2	39	Neurogenic locus notch homolog protein 1, Notch1 {	98.77
d1xkba1	39	Factor X, N-terminal module {Human (Homo sapiens)	98.74
d2vj3a1	42	Neurogenic locus notch homolog protein 1, Notch1 {	98.72
d2c4fl1	37	Factor IX (IXa) {Pig (Sus scrofa) [TaxId: 9823]}	98.7
d1xkba1	39	Factor X, N-terminal module {Human (Homo sapiens)	98.64
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	98.6
d2vj3a3	35	Neurogenic locus notch homolog protein 1, Notch1 {	98.58
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.56
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.56
d1g1ta2	39	E-selectin, EGF-domain {Human (Homo sapiens) [TaxI	98.53
d1autl1	48	Activated protein c (autoprothrombin IIa) {Human (	98.53
d1g1sa2	40	E-selectin, EGF-domain {Human (Homo sapiens) [TaxI	98.53
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.51
d1tpga1	41	Plasminogen activator (tissue-type), t-PA {Human (	98.46
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.45
d1tpga1	41	Plasminogen activator (tissue-type), t-PA {Human (	98.42
d1g1ta2	39	E-selectin, EGF-domain {Human (Homo sapiens) [TaxI	98.41
d1autl1	48	Activated protein c (autoprothrombin IIa) {Human (	98.36
d1q4ga2	42	Prostaglandin H2 synthase-1, EGF-like module {Shee	98.33
d1g1sa2	40	E-selectin, EGF-domain {Human (Homo sapiens) [TaxI	98.31
d1cvua2	41	Prostaglandin H2 synthase-1, EGF-like module {Mous	98.3
d1cvua2	41	Prostaglandin H2 synthase-1, EGF-like module {Mous	98.28
d1q4ga2	42	Prostaglandin H2 synthase-1, EGF-like module {Shee	98.22
d1haea_	63	Heregulin-alpha, EGF-like domain {Human (Homo sapi	98.22
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.09
d3egfa_	53	Epidermal growth factor, EGF {Mouse (Mus musculus)	98.07
d1nqlb_	48	Epidermal growth factor, EGF {Human (Homo sapiens)	98.03
d1emoa1	43	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	98.01
d3egfa_	53	Epidermal growth factor, EGF {Mouse (Mus musculus)	97.98
d1haea_	63	Heregulin-alpha, EGF-like domain {Human (Homo sapi	97.96
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	97.95
d1nqlb_	48	Epidermal growth factor, EGF {Human (Homo sapiens)	97.89
d1lmja1	44	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	97.84
d1lmja1	44	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	97.8
d1emoa1	43	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	97.78
d1uzka1	43	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	97.72
d1uzka2	43	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	97.7
d1lmja2	42	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	97.67
d1lmja2	42	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	97.65
d1gl4a2	40	EGF-like domain of nidogen-1 {Mouse (Mus musculus)	97.6
d1uzka2	43	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	97.58
d1dx5i3	40	Thrombomodulin, different EGF-like domains {Human	97.54
d1uzka1	43	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	97.5
d1apqa_	53	Complement protease C1R {Human (Homo sapiens) [Tax	97.44
d1k36a_	46	Epiregulin, EGF-domain {Human (Homo sapiens) [TaxI	97.4
d1apqa_	53	Complement protease C1R {Human (Homo sapiens) [Tax	97.31
d1i0ua2	41	Low density lipoprotein (LDL) receptor, different	97.29
d1gl4a2	40	EGF-like domain of nidogen-1 {Mouse (Mus musculus)	97.25
d1ioxa_	50	Betacellulin-2 {Human (Homo sapiens) [TaxId: 9606]	97.24
d1k36a_	46	Epiregulin, EGF-domain {Human (Homo sapiens) [TaxI	97.23
d1szba2	45	Mannose-binding protein associated serine protease	97.13
d1nt0a3	45	Mannose-binding protein associated serine protease	97.13
d1moxc_	49	Transforming growth factor alpha {Human (Homo sapi	96.94
d1dx5i3	40	Thrombomodulin, different EGF-like domains {Human	96.91
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	96.89
d1nzia2	42	Complement C1S component {Human (Homo sapiens) [Ta	96.8
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	96.76
d1nt0a3	45	Mannose-binding protein associated serine protease	96.75
d1szba2	45	Mannose-binding protein associated serine protease	96.64
d1ioxa_	50	Betacellulin-2 {Human (Homo sapiens) [TaxId: 9606]	96.6
d3bpse1	40	Low density lipoprotein (LDL) receptor, different	96.56
d1emoa2	39	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	96.49
d1xdtr_	41	Heparin-binding epidermal growth factor, HBEGF {Hu	96.47
d1emoa2	39	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	96.47
d1i0ua2	41	Low density lipoprotein (LDL) receptor, different	96.36
d1moxc_	49	Transforming growth factor alpha {Human (Homo sapi	96.3
d2i9aa1	40	Plasminogen activator (urokinase-type) {Human (Hom	96.08
d1nzia2	42	Complement C1S component {Human (Homo sapiens) [Ta	96.07
d3bpse1	40	Low density lipoprotein (LDL) receptor, different	95.9
d2i9aa1	40	Plasminogen activator (urokinase-type) {Human (Hom	95.71
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	95.12
d1jv2b5	43	Integrin beta EGF-like domains {Human (Homo sapien	94.54
d1kloa1	55	Laminin gamma1 chain {Mouse (Mus musculus) [TaxId:	94.28
d1l3ya_	41	Integrin beta EGF-like domains {Human (Homo sapien	94.09
d1xdtr_	41	Heparin-binding epidermal growth factor, HBEGF {Hu	93.62
d1autl2	50	Activated protein c (autoprothrombin IIa) {Human (	92.85
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	92.29
d1autl2	50	Activated protein c (autoprothrombin IIa) {Human (	92.04
d1jv2b4	31	Integrin beta EGF-like domains {Human (Homo sapien	91.52
d1l3ya_	41	Integrin beta EGF-like domains {Human (Homo sapien	91.47
d1kigl_	51	Factor X, N-terminal module {Cow (Bos taurus) [Tax	91.42
d2p3ua1	51	Factor X, N-terminal module {Human (Homo sapiens)	91.38
d1kloa1	55	Laminin gamma1 chain {Mouse (Mus musculus) [TaxId:	90.86
d1jv2b4	31	Integrin beta EGF-like domains {Human (Homo sapien	90.44
d1dx5i1	43	Thrombomodulin, different EGF-like domains {Human	90.23
d1ijqa2	50	Low density lipoprotein (LDL) receptor, different	89.65
d2p3ua1	51	Factor X, N-terminal module {Human (Homo sapiens)	87.93
d1dx5i1	43	Thrombomodulin, different EGF-like domains {Human	87.59
d1ijqa2	50	Low density lipoprotein (LDL) receptor, different	85.94
d1kigl_	51	Factor X, N-terminal module {Cow (Bos taurus) [Tax	84.07
d1jv2b5	43	Integrin beta EGF-like domains {Human (Homo sapien	81.84
d1kloa3	51	Laminin gamma1 chain {Mouse (Mus musculus) [TaxId:	80.35

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-33  Score=280.22  Aligned_cols=257  Identities=23%  Similarity=0.331  Sum_probs=211.5

Q ss_pred             CCCCCCeeC---CCeEEcCCCCCCcCCCCCCccCcEEecCCCcceeecCCCccCCCCCCcEEeCCCCcceecCCCcCCCc
Q psy15407         87 ACPSGCSCD---GTRVDCSQRGLKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGE  163 (604)
Q Consensus        87 ~CP~~C~C~---~~~l~cs~~~L~~iP~~l~~~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~l  163 (604)
                      +||..|.|.   +..|+|++++|++||..+|..+++|+|++|+|+.|++. +|.++++|++|++++|+|..++..+|.++
T Consensus         1 ~cp~~C~C~~~~~~~v~c~~~~L~~iP~~ip~~~~~L~Ls~N~i~~i~~~-~f~~l~~L~~L~ls~n~l~~i~~~~~~~~   79 (284)
T d1ozna_           1 PCPGACVCYNEPKVTTSCPQQGLQAVPVGIPAASQRIFLHGNRISHVPAA-SFRACRNLTILWLHSNVLARIDAAAFTGL   79 (284)
T ss_dssp             CCCTTCEEECSSSCEEECCSSCCSSCCTTCCTTCSEEECTTSCCCEECTT-TTTTCTTCCEEECCSSCCCEECTTTTTTC
T ss_pred             CcCCCCEEcCCCCeEEEcCCCCCCccCCCCCCCCCEEECcCCcCCCCCHH-Hhhcccccccccccccccccccccccccc
Confidence            599999995   44799999999999999999999999999999999874 59999999999999999999999888887


Q ss_pred             ccCCcCCCCCC---------CCCccccccEEEccCCcccccc------ccccce---eeeeeccccC---Cccccceeec
Q psy15407        164 NDQGCLGDNYC---------PPKCTCTVRVLFYDGRAGECYI------AVELFS---SRIRVSYYVG---NYPVSTMYRD  222 (604)
Q Consensus       164 ~~L~~L~l~~~---------~~~~~~~l~~l~~~~~~~~~~~------~~~~~~---~~~~~~~~~~---~~~~~L~~L~  222 (604)
                      ..++.|.....         .+.....++.+.+..+......      ..++..   ....+..+..   ....+|+.|+
T Consensus        80 ~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~  159 (284)
T d1ozna_          80 ALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLF  159 (284)
T ss_dssp             TTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             ccccccccccccccccccchhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcc
Confidence            77776654322         2233455666666654321110      000000   0111211111   1123799999


Q ss_pred             CCCCceeeccCCCCCCCCCCCeEEecCCcceeeeccccCCCCcccEEEccCCccccCCcccccCcccceeeeccCCCccc
Q psy15407        223 LSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIGGNPLYC  302 (604)
Q Consensus       223 Ls~N~i~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~Npl~C  302 (604)
                      |++|+|+.+++.+|.++++|++|+|++|+|+.+.+..|..+++|++|+|++|+|+.+++.+|..+++|+.|+|++|||.|
T Consensus       160 l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C  239 (284)
T d1ozna_         160 LHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVC  239 (284)
T ss_dssp             CCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEEC
T ss_pred             cccCcccccchhhhccccccchhhhhhccccccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCccccccccccccCCccccCCCCcccccccccCCCCce
Q psy15407        303 DCGLAWLSEWVKRDYVEPGIARCTEPASMRDKLLLTAPASSF  344 (604)
Q Consensus       303 dC~l~~l~~~~~~~~~~~~~~~C~~P~~l~g~~l~~~~~~~~  344 (604)
                      ||++.|+..|+++........+|+.|..++|+.+..+...++
T Consensus       240 ~C~~~~l~~~l~~~~~~~~~~~C~~p~~l~g~~l~~l~~~~l  281 (284)
T d1ozna_         240 DCRARPLWAWLQKFRGSSSEVPCSLPQRLAGRDLKRLAANDL  281 (284)
T ss_dssp             SGGGHHHHHHHHHCCSEECCCBEEESGGGTTCBGGGSCGGGS
T ss_pred             CccchHHHHHHHhCcCCCCceEeCCchHHcCCccccCCHHHC
Confidence            999999999999877777788999999999999999988776

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=100.00  E-value=1.8e-33  Score=261.72  Aligned_cols=186  Identities=50%  Similarity=0.965  Sum_probs=160.8

Q ss_pred             CCCCCeeCCCeEEcCCCCCCcCCCCCCccCcEEecCCCcceeecCCCccCCCCCCcEEeCCCCcceecCCCcCCCcccCC
Q psy15407         88 CPSGCSCDGTRVDCSQRGLKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQG  167 (604)
Q Consensus        88 CP~~C~C~~~~l~cs~~~L~~iP~~l~~~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~  167 (604)
                      ||..|+|.+++|+|++++|++||.+||..+++|+|++|+|+.+.....|.++++|++|+|++|+|+.+.+.+|.      
T Consensus         2 CP~~C~C~~~~v~Cs~~~L~~iP~~lp~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~------   75 (192)
T d1w8aa_           2 CPAMCHCEGTTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFE------   75 (192)
T ss_dssp             CCTTSEEETTEEECTTSCCSSCCSCCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTT------
T ss_pred             cCCCCEEcCCEEEEeCCCcCccCCCCCCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccc------
Confidence            89999999999999999999999999999999999999997644445588888888888888888777665554      


Q ss_pred             cCCCCCCCCCccccccEEEccCCccccccccccceeeeeeccccCCccccceeecCCCCceeeccCCCCCCCCCCCeEEe
Q psy15407        168 CLGDNYCPPKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLIL  247 (604)
Q Consensus       168 ~L~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L  247 (604)
                                                                                            .+++|++|+|
T Consensus        76 ----------------------------------------------------------------------~~~~L~~L~L   85 (192)
T d1w8aa_          76 ----------------------------------------------------------------------GASHIQELQL   85 (192)
T ss_dssp             ----------------------------------------------------------------------TCTTCCEEEC
T ss_pred             ----------------------------------------------------------------------cccccceeee
Confidence                                                                                  3456677777


Q ss_pred             cCCcceeeeccccCCCCcccEEEccCCccccCCcccccCcccceeeeccCCCcccccCCCccccccccccccCCccccCC
Q psy15407        248 SYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIGGNPLYCDCGLAWLSEWVKRDYVEPGIARCTE  327 (604)
Q Consensus       248 s~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~Npl~CdC~l~~l~~~~~~~~~~~~~~~C~~  327 (604)
                      ++|+|+.|++.+|.++++|++|+|++|+|+.|++++|..+++|++|+|++|+|.|+|.+.|+..|++......+..+|..
T Consensus        86 s~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~~~~~~~l~~~~l~~~~~~c~~  165 (192)
T d1w8aa_          86 GENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGA  165 (192)
T ss_dssp             CSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHHHHHHHHCCSGGGCBBCS
T ss_pred             ccccccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccccccchHHHhhhhhhhcccCCCeEeCC
Confidence            77777777777888888888888888888888888888899999999999999999999999999988877778899999


Q ss_pred             CCcccccccccCCCCceeecCc
Q psy15407        328 PASMRDKLLLTAPASSFQCKEK  349 (604)
Q Consensus       328 P~~l~g~~l~~~~~~~~~C~~~  349 (604)
                      |..++|..+.++...+|.|..+
T Consensus       166 p~~l~~~~l~~L~~n~l~C~~~  187 (192)
T d1w8aa_         166 PSKVRDVQIKDLPHSEFKCSSE  187 (192)
T ss_dssp             STTTTTSBGGGSCTTTCCCCCC
T ss_pred             ChhhcCCEeeecCHhhCcCCCC
Confidence            9999999999999999999765

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=8.7e-32  Score=263.88  Aligned_cols=211  Identities=24%  Similarity=0.329  Sum_probs=176.4

Q ss_pred             CCCeeCC----CeEEcCCCCCCcCCCCCCccCcEEecCCCcceeecCCCccCCCCCCcEEeCCCCcceecCCCcCCCccc
Q psy15407         90 SGCSCDG----TRVDCSQRGLKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGEND  165 (604)
Q Consensus        90 ~~C~C~~----~~l~cs~~~L~~iP~~l~~~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~  165 (604)
                      ..|.|..    .+|+|++++|++||..+|..+++|+|++|+|+.|++. .|.++++|++|+|++|+|+.|+.  |..+++
T Consensus         2 ~~C~~~~~~~~~~v~C~~~~L~~iP~~lp~~l~~L~Ls~N~i~~l~~~-~f~~l~~L~~L~L~~N~l~~l~~--~~~l~~   78 (266)
T d1p9ag_           2 PICEVSKVASHLEVNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLA-TLMPYTRLTQLNLDRAELTKLQV--DGTLPV   78 (266)
T ss_dssp             CSSEEECSTTCCEEECTTSCCSSCCSCCCTTCCEEECTTSCCSEEEGG-GGTTCTTCCEEECTTSCCCEEEC--CSCCTT
T ss_pred             CccEEcccCCCeEEEccCCCCCeeCcCcCcCCCEEECcCCcCCCcCHH-Hhhcccccccccccccccccccc--cccccc
Confidence            3577864    5699999999999999999999999999999999874 59999999999999999999975  677999


Q ss_pred             CCcCCCCCCCCCcc-------ccccEEEccCCccccccccccceeeeeeccccCCccccceeecCCCCceeeccCCCCCC
Q psy15407        166 QGCLGDNYCPPKCT-------CTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSNFTFSP  238 (604)
Q Consensus       166 L~~L~l~~~~~~~~-------~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~i~~l~~~~f~~  238 (604)
                      |+.|+|++|.+...       ..++.+.+..+         .....   .........++++|++++|.|+.+++..|..
T Consensus        79 L~~L~Ls~N~l~~~~~~~~~l~~L~~L~l~~~---------~~~~~---~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~  146 (266)
T d1p9ag_          79 LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFN---------RLTSL---PLGALRGLGELQELYLKGNELKTLPPGLLTP  146 (266)
T ss_dssp             CCEEECCSSCCSSCCCCTTTCTTCCEEECCSS---------CCCCC---CSSTTTTCTTCCEEECTTSCCCCCCTTTTTT
T ss_pred             cccccccccccccccccccccccccccccccc---------cccee---eccccccccccccccccccccceeccccccc
Confidence            99999999876432       22233332222         11111   1111112348899999999999999999999


Q ss_pred             CCCCCeEEecCCcceeeeccccCCCCcccEEEccCCccccCCcccccCcccceeeeccCCCcccccCCCccccccccc
Q psy15407        239 LSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIGGNPLYCDCGLAWLSEWVKRD  316 (604)
Q Consensus       239 l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~Npl~CdC~l~~l~~~~~~~  316 (604)
                      +++|+.|+|++|+|+.+++.+|..+++|++|+|++|+|+.||+++| .+++|+.|+|++|||.|||++.||.+|++..
T Consensus       147 l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~~lp~~~~-~~~~L~~L~L~~Np~~CdC~~~~l~~wl~~~  223 (266)
T d1p9ag_         147 TPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF-GSHLLPFAFLHGNPWLCNCEILYFRRWLQDN  223 (266)
T ss_dssp             CTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT-TTCCCSEEECCSCCBCCSGGGHHHHHHHHHT
T ss_pred             cccchhcccccccccccCccccccccccceeecccCCCcccChhHC-CCCCCCEEEecCCCCCCCcchHHHHHHHHhc
Confidence            9999999999999999999999999999999999999999998765 6889999999999999999999999999754

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.93  E-value=7.6e-26  Score=225.96  Aligned_cols=214  Identities=27%  Similarity=0.352  Sum_probs=165.8

Q ss_pred             CCCCCCCeeCCCeEEcCCCCCCcCCCCCCccCcEEecCCCcceeecCCCccCCCCCCcEEeCCCCcceecCCCcCCCccc
Q psy15407         86 AACPSGCSCDGTRVDCSQRGLKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGEND  165 (604)
Q Consensus        86 ~~CP~~C~C~~~~l~cs~~~L~~iP~~l~~~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~  165 (604)
                      .+||..|+|..+.|||++++|++||..+|..+++|+|++|+|+.|++. .|.++++|++|++++|.+..+++.+|..+.+
T Consensus         2 ~~~p~~c~c~~~~~~C~~~~L~~lP~~l~~~l~~L~Ls~N~i~~l~~~-~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~   80 (305)
T d1xkua_           2 PVCPFRCQCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDG-DFKNLKNLHTLILINNKISKISPGAFAPLVK   80 (305)
T ss_dssp             CCCCTTCEEETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTT-TTTTCTTCCEEECCSSCCCCBCTTTTTTCTT
T ss_pred             CCCCCCCEecCCEEEecCCCCCccCCCCCCCCCEEECcCCcCCCcChh-HhhccccccccccccccccccchhhhhCCCc
Confidence            579999999999999999999999999999999999999999999874 4999999999999999999999999999999


Q ss_pred             CCcCCCCCCCCCccc-----cccEEEccCCccccc---------------ccc----------ccce----------eee
Q psy15407        166 QGCLGDNYCPPKCTC-----TVRVLFYDGRAGECY---------------IAV----------ELFS----------SRI  205 (604)
Q Consensus       166 L~~L~l~~~~~~~~~-----~l~~l~~~~~~~~~~---------------~~~----------~~~~----------~~~  205 (604)
                      |+.|++++|.+..+.     .+..+....+.....               ...          ..+.          ...
T Consensus        81 L~~L~l~~n~l~~l~~~~~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n  160 (305)
T d1xkua_          81 LERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADT  160 (305)
T ss_dssp             CCEEECCSSCCSBCCSSCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSS
T ss_pred             cCEecccCCccCcCccchhhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccC
Confidence            999999988644332     233333322111000               000          0000          001


Q ss_pred             eeccccCCccccceeecCCCCceeeccCCCCCCCCCCCeEEecCCcceeeeccccCCCCcccEEEccCCccccCCccccc
Q psy15407        206 RVSYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFA  285 (604)
Q Consensus       206 ~~~~~~~~~~~~L~~L~Ls~N~i~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~  285 (604)
                      .+..+......+|+.|+|++|.++.+.+..|..++.++.|++++|+|..+++.+|.++++|++|+|++|+|+.||. .|.
T Consensus       161 ~l~~l~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~~lp~-~l~  239 (305)
T d1xkua_         161 NITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPG-GLA  239 (305)
T ss_dssp             CCCSCCSSCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCT-TTT
T ss_pred             CccccCcccCCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccceeeeccccccccccc-ccc
Confidence            1112222334577888888888888888888888888888888888888888888888888899999888888876 577


Q ss_pred             CcccceeeeccCCCcc
Q psy15407        286 DLHAITHLAIGGNPLY  301 (604)
Q Consensus       286 ~l~~L~~L~L~~Npl~  301 (604)
                      .+++|++|+|++|++.
T Consensus       240 ~l~~L~~L~Ls~N~i~  255 (305)
T d1xkua_         240 DHKYIQVVYLHNNNIS  255 (305)
T ss_dssp             TCSSCCEEECCSSCCC
T ss_pred             cccCCCEEECCCCccC
Confidence            8888888888888876

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=3.8e-23  Score=183.80  Aligned_cols=100  Identities=22%  Similarity=0.423  Sum_probs=83.7

Q ss_pred             CCCCCCCCCeEEecCCcceeeeccccCCCCcccEEEccCCccccCCcccccCcccceeeeccCCCcccccCCCccccccc
Q psy15407        235 TFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIGGNPLYCDCGLAWLSEWVK  314 (604)
Q Consensus       235 ~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~Npl~CdC~l~~l~~~~~  314 (604)
                      +|.++++|+.|+|++|+|+.|++.+|..+++|++|+|++|+|++|+.++|..+ +|+.|+|++|||.|||++.||..|++
T Consensus        51 ~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~~-~l~~L~L~~Np~~C~C~~~~l~~~~~  129 (156)
T d2ifga3          51 DLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGL-SLQELVLSGNPLHCSCALRWLQRWEE  129 (156)
T ss_dssp             GSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSC-CCCEEECCSSCCCCCGGGHHHHHHHH
T ss_pred             hhccccccCcceeeccccCCcccccccccccccceeccCCCCcccChhhhccc-cccccccCCCcccCCchHHHHHHHHH
Confidence            44456677888888888888888888889999999999999999999888766 69999999999999999999999987


Q ss_pred             cccc--cCCccccCCCCcccccc
Q psy15407        315 RDYV--EPGIARCTEPASMRDKL  335 (604)
Q Consensus       315 ~~~~--~~~~~~C~~P~~l~g~~  335 (604)
                      ....  .....+|.+|..++|.+
T Consensus       130 ~~~~~~~~~~~~C~~p~~l~~~p  152 (156)
T d2ifga3         130 EGLGGVPEQKLQCHGQGPLAHMP  152 (156)
T ss_dssp             TTCSSCGGGCCCCSSSSCSSCCC
T ss_pred             hccCccCcCCcEECcChHHCcCC
Confidence            6433  34568999999888854

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=5.5e-22  Score=190.60  Aligned_cols=208  Identities=17%  Similarity=0.232  Sum_probs=133.2

Q ss_pred             CCCC-CeeCCCeEEcCCCCCCcCCCCCCccCcEEecCCCcceeecCCCccCCCCCCcEEeCCCCccee-cCCCcCCCccc
Q psy15407         88 CPSG-CSCDGTRVDCSQRGLKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTG-IEDNAFEGEND  165 (604)
Q Consensus        88 CP~~-C~C~~~~l~cs~~~L~~iP~~l~~~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~-i~~~~f~~l~~  165 (604)
                      ||.. |+|..+.|+|++++|++||..+|.++++|+|++|.|+.|+.. +|.++++|++|+|++|.+.. +++.+|.++.+
T Consensus         1 ~~~~~C~C~~~~i~c~~~~l~~iP~~l~~~l~~L~Ls~n~i~~l~~~-~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~   79 (242)
T d1xwdc1           1 CHHRICHCSNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKG-AFSGFGDLEKIEISQNDVLEVIEADVFSNLPK   79 (242)
T ss_dssp             CCCSSEEECSSEEEEESCSCSSCCSCSCSCCSEEEEESCCCCEECTT-TTTTCTTCCEEEEESCTTCCEECSSSEESCTT
T ss_pred             CcCCcCCCcCCEEEEeCCCCCCcCCCCCCCCCEEECcCCcCCccChh-Hhhccchhhhhhhccccccceeeccccccccc
Confidence            5655 999999999999999999999999999999999999999874 59999999999999998865 78899999999


Q ss_pred             CCcCCCCCC-CC--------CccccccEEEccCCcccccccccccee-------ee---eecccc----CCccccceeec
Q psy15407        166 QGCLGDNYC-PP--------KCTCTVRVLFYDGRAGECYIAVELFSS-------RI---RVSYYV----GNYPVSTMYRD  222 (604)
Q Consensus       166 L~~L~l~~~-~~--------~~~~~l~~l~~~~~~~~~~~~~~~~~~-------~~---~~~~~~----~~~~~~L~~L~  222 (604)
                      ++.|.+..+ ..        .....++.+.+..+.............       ..   .+..+.    ...+..++.|+
T Consensus        80 l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~  159 (242)
T d1xwdc1          80 LHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILW  159 (242)
T ss_dssp             CCEEEEECCTTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEE
T ss_pred             cccccccccccccccccccccccccccccccchhhhcccccccccccccccccccccccccccccccccccccccceeee
Confidence            998876543 21        223345555554432211100000000       00   000000    01122455566


Q ss_pred             CCCCceeeccCCCCCCCCCCCeEEecCCcceeeeccccCCCCcccEEEccCCccccCCcccccCcccceeeecc
Q psy15407        223 LSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIG  296 (604)
Q Consensus       223 Ls~N~i~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~  296 (604)
                      +++|+|+.++...|.....++.+++++|+|+.|++.+|.++++|++|+|++|+|+.+|+..|..+++|+.|++.
T Consensus       160 l~~n~l~~i~~~~~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~~  233 (242)
T d1xwdc1         160 LNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTY  233 (242)
T ss_dssp             CCSSCCCEECTTTTTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESSSEE
T ss_pred             cccccccccccccccchhhhccccccccccccccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCcccccCcCC
Confidence            66666666665555443333334455566666666666666666666666666666666666666666655553

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.79  E-value=7.3e-19  Score=174.67  Aligned_cols=200  Identities=23%  Similarity=0.230  Sum_probs=145.3

Q ss_pred             CCeEEcCCCCCCcCCCC-CC--ccCcEEecCCCcceeecCCCccCCCCCCcEEeCCCCcceecCCCcCCCcccCCcCCCC
Q psy15407         96 GTRVDCSQRGLKEIPKD-IP--LYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDN  172 (604)
Q Consensus        96 ~~~l~cs~~~L~~iP~~-l~--~~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~l~  172 (604)
                      -++|++++|+|++||.. +.  ..+++|++++|.|..+++. +|.++++|++|+|++|+|+.|+...+..+..   |.+.
T Consensus        33 l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~-~f~~l~~L~~L~l~~n~l~~l~~~~~~~l~~---L~~~  108 (305)
T d1xkua_          33 TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPG-AFAPLVKLERLYLSKNQLKELPEKMPKTLQE---LRVH  108 (305)
T ss_dssp             CCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTT-TTTTCTTCCEEECCSSCCSBCCSSCCTTCCE---EECC
T ss_pred             CCEEECcCCcCCCcChhHhhccccccccccccccccccchh-hhhCCCccCEecccCCccCcCccchhhhhhh---hhcc
Confidence            47899999999999974 43  5679999999999999764 4999999999999999999998776655432   2222


Q ss_pred             CCCC----------------------------------CccccccEEEccCCccccccccccceeeee----------e-
Q psy15407        173 YCPP----------------------------------KCTCTVRVLFYDGRAGECYIAVELFSSRIR----------V-  207 (604)
Q Consensus       173 ~~~~----------------------------------~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~----------~-  207 (604)
                      .|..                                  ..+..+..+.+..+.... +....+.+...          . 
T Consensus       109 ~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~-l~~~~~~~L~~L~l~~n~~~~~~  187 (305)
T d1xkua_         109 ENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQGLPPSLTELHLDGNKITKVD  187 (305)
T ss_dssp             SSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-CCSSCCTTCSEEECTTSCCCEEC
T ss_pred             ccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCccc-cCcccCCccCEEECCCCcCCCCC
Confidence            2211                                  111233334433321110 11111111100          0 


Q ss_pred             ccccCCccccceeecCCCCceeeccCCCCCCCCCCCeEEecCCcceeeeccccCCCCcccEEEccCCccccCCccccc--
Q psy15407        208 SYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFA--  285 (604)
Q Consensus       208 ~~~~~~~~~~L~~L~Ls~N~i~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~--  285 (604)
                      ....... ..++.|++++|.|+.+++..|.++++|++|+|++|+|+.|+ .+|..+++|++|+|++|+|+.|+...|.  
T Consensus       188 ~~~~~~~-~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~~lp-~~l~~l~~L~~L~Ls~N~i~~i~~~~f~~~  265 (305)
T d1xkua_         188 AASLKGL-NNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVP-GGLADHKYIQVVYLHNNNISAIGSNDFCPP  265 (305)
T ss_dssp             TGGGTTC-TTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCC-TTTTTCSSCCEEECCSSCCCCCCTTSSSCS
T ss_pred             hhHhhcc-ccccccccccccccccccccccccccceeeecccccccccc-cccccccCCCEEECCCCccCccChhhccCc
Confidence            0111112 37889999999999999999999999999999999999994 5899999999999999999999876664  


Q ss_pred             ----CcccceeeeccCCCccc
Q psy15407        286 ----DLHAITHLAIGGNPLYC  302 (604)
Q Consensus       286 ----~l~~L~~L~L~~Npl~C  302 (604)
                          .+.+|+.|+|++|||..
T Consensus       266 ~~~~~~~~L~~L~L~~N~~~~  286 (305)
T d1xkua_         266 GYNTKKASYSGVSLFSNPVQY  286 (305)
T ss_dssp             SCCTTSCCCSEEECCSSSSCG
T ss_pred             chhcccCCCCEEECCCCcCcc
Confidence                46789999999999975

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=2.3e-18  Score=167.35  Aligned_cols=173  Identities=17%  Similarity=0.145  Sum_probs=140.7

Q ss_pred             cEEecCCCcceeecCCCccCCCCCCcEEeCCCCcceecCCCcCCCcccCCcCCCCCCCCCccccccEEEccCCccccccc
Q psy15407        118 TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDNYCPPKCTCTVRVLFYDGRAGECYIA  197 (604)
Q Consensus       118 ~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~l~~~~~~~~~~l~~l~~~~~~~~~~~~  197 (604)
                      .+++.+++.|+.||+.  +.  ++|++|+|++|+|+.|++.+|.++++|+.|+|++|.+..+...   .....+..+.+.
T Consensus        13 ~~v~C~~~~L~~iP~~--lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l~~~---~~l~~L~~L~Ls   85 (266)
T d1p9ag_          13 LEVNCDKRNLTALPPD--LP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD---GTLPVLGTLDLS   85 (266)
T ss_dssp             CEEECTTSCCSSCCSC--CC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC---SCCTTCCEEECC
T ss_pred             eEEEccCCCCCeeCcC--cC--cCCCEEECcCCcCCCcCHHHhhccccccccccccccccccccc---cccccccccccc
Confidence            5679999999999864  43  5899999999999999999999999999999999976543221   112223333333


Q ss_pred             cccceeeeeeccccCCccccceeecCCCCceeeccCCCCCCCCCCCeEEecCCcceeeeccccCCCCcccEEEccCCccc
Q psy15407        198 VELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDIS  277 (604)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~i~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~  277 (604)
                      .+.+...   ......+ .+|++|+|++|.+..+....|..+.+|++|++++|.|+.+++..|..+++|+.|+|++|+|+
T Consensus        86 ~N~l~~~---~~~~~~l-~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~  161 (266)
T d1p9ag_          86 HNQLQSL---PLLGQTL-PALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT  161 (266)
T ss_dssp             SSCCSSC---CCCTTTC-TTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCS
T ss_pred             ccccccc---ccccccc-cccccccccccccceeeccccccccccccccccccccceeccccccccccchhccccccccc
Confidence            3332221   1112222 38999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCcccccCcccceeeeccCCCcc
Q psy15407        278 MIPEGAFADLHAITHLAIGGNPLY  301 (604)
Q Consensus       278 ~i~~~~f~~l~~L~~L~L~~Npl~  301 (604)
                      .+++..|..+++|++|+|++|.+.
T Consensus       162 ~~~~~~~~~l~~L~~L~Ls~N~L~  185 (266)
T d1p9ag_         162 ELPAGLLNGLENLDTLLLQENSLY  185 (266)
T ss_dssp             CCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             ccCccccccccccceeecccCCCc
Confidence            999999999999999999999886

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.74  E-value=1.8e-18  Score=172.54  Aligned_cols=201  Identities=20%  Similarity=0.185  Sum_probs=109.2

Q ss_pred             CeEEcCCCCCC---cCCCCC--CccCcEEecCC-Ccce-eecCCCccCCCCCCcEEeCCCCcceecCCCcCCCcccCCcC
Q psy15407         97 TRVDCSQRGLK---EIPKDI--PLYTTELILND-NEIG-KIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCL  169 (604)
Q Consensus        97 ~~l~cs~~~L~---~iP~~l--~~~~~~L~L~~-N~i~-~i~~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L  169 (604)
                      +.|++++++++   .||..|  ...+++|+|++ |+|+ .||+.  |.+|++|++|+|++|+|..+.+..|..+..|+.|
T Consensus        53 ~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~--i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l  130 (313)
T d1ogqa_          53 NNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPA--IAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL  130 (313)
T ss_dssp             EEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGG--GGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred             EEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccc--cccccccchhhhccccccccccccccchhhhccc
Confidence            56888888887   477776  35678899986 7776 67654  8889999999999999988888888888888888


Q ss_pred             CCCCCC--------CCccccccEEEccCCccccccccccc------ee----eeeeccc--cCCccccceeecCCCCcee
Q psy15407        170 GDNYCP--------PKCTCTVRVLFYDGRAGECYIAVELF------SS----RIRVSYY--VGNYPVSTMYRDLSNNQIG  229 (604)
Q Consensus       170 ~l~~~~--------~~~~~~l~~l~~~~~~~~~~~~~~~~------~~----~~~~~~~--~~~~~~~L~~L~Ls~N~i~  229 (604)
                      +++.|.        +..+..+..+.+..+.....++....      ..    ...+...  .......+..++++.+.+.
T Consensus       131 ~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~~l~l~~~~~~  210 (313)
T d1ogqa_         131 DFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLE  210 (313)
T ss_dssp             ECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEE
T ss_pred             ccccccccccCchhhccCcccceeeccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            888763        22334455555554432211111100      00    0000000  0000012233444555444


Q ss_pred             eccCCCCCCCCCCCeEEecCCcceeeeccccCCCCcccEEEccCCccc-cCCcccccCcccceeeeccCCCcc
Q psy15407        230 FLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDIS-MIPEGAFADLHAITHLAIGGNPLY  301 (604)
Q Consensus       230 ~l~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~-~i~~~~f~~l~~L~~L~L~~Npl~  301 (604)
                      ...+..+..+++|+.|++++|.+...++ .+..+++|+.|+|++|+|+ .||+ .|..+++|++|+|++|.+.
T Consensus       211 ~~~~~~~~~~~~l~~l~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~-~l~~L~~L~~L~Ls~N~l~  281 (313)
T d1ogqa_         211 GDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQ-GLTQLKFLHSLNVSFNNLC  281 (313)
T ss_dssp             ECCGGGCCTTSCCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCCG-GGGGCTTCCEEECCSSEEE
T ss_pred             cccccccccccccccccccccccccccc-ccccccccccccCccCeecccCCh-HHhCCCCCCEEECcCCccc
Confidence            4444444444555555555555444322 3444445555555555554 2332 3444455555555555443

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=6.6e-18  Score=161.65  Aligned_cols=185  Identities=17%  Similarity=0.152  Sum_probs=128.9

Q ss_pred             CCCeEEcCCCCCCcCCCCC---CccCcEEecCCCcceeecCCCccCCCCCCcEEeCC-CCcceecCCCcCCCcccCCcCC
Q psy15407         95 DGTRVDCSQRGLKEIPKDI---PLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLR-RNQVTGIEDNAFEGENDQGCLG  170 (604)
Q Consensus        95 ~~~~l~cs~~~L~~iP~~l---~~~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls-~N~i~~i~~~~f~~l~~L~~L~  170 (604)
                      ..+.|++++|.|+.||...   ...+++|+|++|.+....+...|.++++|++|++. .|++..+.+..|.++++|+.|.
T Consensus        30 ~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~  109 (242)
T d1xwdc1          30 NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLL  109 (242)
T ss_dssp             CCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEEE
T ss_pred             CCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccccccccccccccccccccccccc
Confidence            4589999999999999854   35679999999998764334569999999999986 4789999999999999999999


Q ss_pred             CCCCCCCccc------cccEEEc--cCCccccccccccce-----------eeeeeccc---cCCccccceeecCCCCce
Q psy15407        171 DNYCPPKCTC------TVRVLFY--DGRAGECYIAVELFS-----------SRIRVSYY---VGNYPVSTMYRDLSNNQI  228 (604)
Q Consensus       171 l~~~~~~~~~------~l~~l~~--~~~~~~~~~~~~~~~-----------~~~~~~~~---~~~~~~~L~~L~Ls~N~i  228 (604)
                      +.++.+....      .+..+..  ..+.....+....+.           ....+..+   .......++.+++++|+|
T Consensus       110 l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~i~~~~~~~~~l~~~~~l~~n~l  189 (242)
T d1xwdc1         110 ISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNL  189 (242)
T ss_dssp             EESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTTTTTCCEEEEECTTCTTC
T ss_pred             cchhhhcccccccccccccccccccccccccccccccccccccccceeeecccccccccccccccchhhhcccccccccc
Confidence            9887543222      2222211  111111111111100           00111111   111221234457899999


Q ss_pred             eeccCCCCCCCCCCCeEEecCCcceeeeccccCCCCcccEEEccCCccccCCc
Q psy15407        229 GFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPE  281 (604)
Q Consensus       229 ~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~  281 (604)
                      +.|+...|.++++|++|+|++|+|+.+++..|.++++|+.|++.+  ++.+|+
T Consensus       190 ~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~~~--l~~lp~  240 (242)
T d1xwdc1         190 EELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYN--LKKLPT  240 (242)
T ss_dssp             CCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESSSEES--SSCSCC
T ss_pred             ccccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCcccccCcCCC--CCcCCC
Confidence            999999999999999999999999999999999999999887743  555553

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.71  E-value=2e-17  Score=154.56  Aligned_cols=160  Identities=26%  Similarity=0.245  Sum_probs=130.2

Q ss_pred             CeEEcCCCCCCcCCC-CCCccCcEEecCCCcceeecCCCccCCCCCCcEEeCCCCcceecCCCcCCCcccCCcCCCCCCC
Q psy15407         97 TRVDCSQRGLKEIPK-DIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDNYCP  175 (604)
Q Consensus        97 ~~l~cs~~~L~~iP~-~l~~~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~l~~~~  175 (604)
                      +.|+++++.++.++. .....+++|+|++|+|+.+++   +..+++|++|+|++|+|+.++  .|.++++|+.|+++++.
T Consensus        49 ~~L~l~~~~i~~l~~l~~l~~L~~L~L~~n~i~~l~~---~~~l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~l~~~~  123 (210)
T d1h6ta2          49 DQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP---LANLKNLGWLFLDENKVKDLS--SLKDLKKLKSLSLEHNG  123 (210)
T ss_dssp             CEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG---GTTCTTCCEEECCSSCCCCGG--GGTTCTTCCEEECTTSC
T ss_pred             cEEECcCCCCCCchhHhhCCCCCEEeCCCccccCccc---cccCccccccccccccccccc--ccccccccccccccccc
Confidence            678999999998864 125678999999999999874   788999999999999999886  48888888888888765


Q ss_pred             CCccccccEEEccCCccccccccccceeeeeeccccCCccccceeecCCCCceeeccCCCCCCCCCCCeEEecCCcceee
Q psy15407        176 PKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCI  255 (604)
Q Consensus       176 ~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~i~~l~~~~f~~l~~L~~L~Ls~N~l~~i  255 (604)
                      ...+..                            + .. ...++.+++++|.++.+.  .+..+++|++|+|++|+|+.+
T Consensus       124 ~~~~~~----------------------------l-~~-l~~l~~l~~~~n~l~~~~--~~~~l~~L~~l~l~~n~l~~i  171 (210)
T d1h6ta2         124 ISDING----------------------------L-VH-LPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDI  171 (210)
T ss_dssp             CCCCGG----------------------------G-GG-CTTCCEEECCSSCCCCCG--GGGGCTTCSEEECCSSCCCCC
T ss_pred             cccccc----------------------------c-cc-cccccccccccccccccc--ccccccccccccccccccccc
Confidence            332111                            0 01 127889999999998765  467789999999999999988


Q ss_pred             eccccCCCCcccEEEccCCccccCCcccccCcccceeeeccC
Q psy15407        256 DRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIGG  297 (604)
Q Consensus       256 ~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~  297 (604)
                      ++  |.++++|+.|+|++|+|+.|+  .|..+++|++|+|++
T Consensus       172 ~~--l~~l~~L~~L~Ls~N~i~~l~--~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         172 VP--LAGLTKLQNLYLSKNHISDLR--ALAGLKNLDVLELFS  209 (210)
T ss_dssp             GG--GTTCTTCCEEECCSSCCCBCG--GGTTCTTCSEEEEEE
T ss_pred             cc--ccCCCCCCEEECCCCCCCCCh--hhcCCCCCCEEEccC
Confidence            53  889999999999999999986  388999999999974

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=5.1e-17  Score=159.39  Aligned_cols=180  Identities=19%  Similarity=0.182  Sum_probs=125.9

Q ss_pred             cEEecCCCcceeecCCCccCCCCCCcEEeCCCCcceecCCCcCCCcccCCcCCCCCCCCCcc--------ccccEEEccC
Q psy15407        118 TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDNYCPPKCT--------CTVRVLFYDG  189 (604)
Q Consensus       118 ~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~l~~~~~~~~--------~~l~~l~~~~  189 (604)
                      ..++.++.+++.||..  +.  +++++|+|++|+|+.|++.+|.++++|+.|+++++.+..+        ..+..+....
T Consensus        14 ~~v~c~~~~L~~iP~~--ip--~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~   89 (284)
T d1ozna_          14 VTTSCPQQGLQAVPVG--IP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD   89 (284)
T ss_dssp             CEEECCSSCCSSCCTT--CC--TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             eEEEcCCCCCCccCCC--CC--CCCCEEECcCCcCCCCCHHHhhcccccccccccccccccccccccccccccccccccc
Confidence            4578899999999763  32  6789999999999999999999999999999998864322        2222222221


Q ss_pred             Cccccccccccce----------eeee---eccccCCccccceeecCCCCceeeccCCCCCCCCCCCeEEecCCcceeee
Q psy15407        190 RAGECYIAVELFS----------SRIR---VSYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCID  256 (604)
Q Consensus       190 ~~~~~~~~~~~~~----------~~~~---~~~~~~~~~~~L~~L~Ls~N~i~~l~~~~f~~l~~L~~L~Ls~N~l~~i~  256 (604)
                      ......+....+.          ....   +.........+|+.+++++|+|+.+++.+|..+++|+.|+|++|+|+.++
T Consensus        90 ~~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~  169 (284)
T d1ozna_          90 NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVP  169 (284)
T ss_dssp             CTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEEC
T ss_pred             ccccccccchhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccc
Confidence            1111000000000          0001   11111122346778888888888888888888888888888888888888


Q ss_pred             ccccCCCCcccEEEccCCccccCCcccccCcccceeeeccCCCcc
Q psy15407        257 RDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIGGNPLY  301 (604)
Q Consensus       257 ~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~Npl~  301 (604)
                      +.+|.++++|+.|+|++|+|+.+++..|..+++|++|++++|.+.
T Consensus       170 ~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~  214 (284)
T d1ozna_         170 ERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLS  214 (284)
T ss_dssp             TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCS
T ss_pred             hhhhccccccchhhhhhccccccChhHhhhhhhcccccccccccc
Confidence            888888888888888888888888778888888888888888775

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.69  E-value=1.3e-17  Score=153.51  Aligned_cols=153  Identities=20%  Similarity=0.240  Sum_probs=125.9

Q ss_pred             CCeEEcCCCCCCc-CCCCC---CccCcEEecCCCcceeecCCCccCCCCCCcEEeCCCCcceecCCCcCCCcccCCcCCC
Q psy15407         96 GTRVDCSQRGLKE-IPKDI---PLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGD  171 (604)
Q Consensus        96 ~~~l~cs~~~L~~-iP~~l---~~~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~l  171 (604)
                      .+.|++++|.|+. ++...   ...+++|+|++|.|..+++. .|..+++|++|+|++|+|+.|++++|.+++       
T Consensus        31 l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~-~~~~~~~L~~L~Ls~N~l~~l~~~~F~~l~-------  102 (192)
T d1w8aa_          31 TTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPN-AFEGASHIQELQLGENKIKEISNKMFLGLH-------  102 (192)
T ss_dssp             CSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTT-TTTTCTTCCEEECCSCCCCEECSSSSTTCT-------
T ss_pred             CCEEEeCCCCCcccccccccCCCceEeeeecccccccccccc-ccccccccceeeeccccccccCHHHHhCCC-------
Confidence            4789999999985 55544   35679999999999999874 599999999999999999999999999875       


Q ss_pred             CCCCCCccccccEEEccCCccccccccccceeeeeeccccCCccccceeecCCCCceeeccCCCCCCCCCCCeEEecCCc
Q psy15407        172 NYCPPKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNK  251 (604)
Q Consensus       172 ~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~i~~l~~~~f~~l~~L~~L~Ls~N~  251 (604)
                                                                   +|++|+|++|+|+.|++.+|..+++|++|+|++|.
T Consensus       103 ---------------------------------------------~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~  137 (192)
T d1w8aa_         103 ---------------------------------------------QLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNP  137 (192)
T ss_dssp             ---------------------------------------------TCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCC
T ss_pred             ---------------------------------------------cccccccCCccccccCHHHhcCCcccccccccccc
Confidence                                                         78889999999999999999999999999999999


Q ss_pred             ceeeeccccCCCCcccEEEccCCccccCCcccccCcccceeeeccCCCcccccC
Q psy15407        252 LQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIGGNPLYCDCG  305 (604)
Q Consensus       252 l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~Npl~CdC~  305 (604)
                      +.......+ ....|+.+.+..|.++...+   ..+..++.++|+.|.|.|+..
T Consensus       138 ~~~~~~~~~-~~~~l~~~~l~~~~~~c~~p---~~l~~~~l~~L~~n~l~C~~~  187 (192)
T d1w8aa_         138 FNCNCHLAW-FAEWLRKKSLNGGAARCGAP---SKVRDVQIKDLPHSEFKCSSE  187 (192)
T ss_dssp             BCCSGGGHH-HHHHHHHHCCSGGGCBBCSS---TTTTTSBGGGSCTTTCCCCCC
T ss_pred             cccccchHH-HhhhhhhhcccCCCeEeCCC---hhhcCCEeeecCHhhCcCCCC
Confidence            886543222 12456777788888775433   345667788999999999765

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=4.5e-18  Score=151.62  Aligned_cols=78  Identities=24%  Similarity=0.233  Sum_probs=44.8

Q ss_pred             cceeecCCCCceeeccCCCCCCCCCCCeEEecCCcceeeec-cccCCCCcccEEEccCCccccCCc---ccccCccccee
Q psy15407        217 STMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDR-DALAGLKSLRIISLHGNDISMIPE---GAFADLHAITH  292 (604)
Q Consensus       217 ~L~~L~Ls~N~i~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~-~~f~~l~~L~~L~Ls~N~l~~i~~---~~f~~l~~L~~  292 (604)
                      +|++|+|++|+|+.+++..|..+++|+.|+|++|+|+.++. ..|..+++|++|+|++|.|+.++.   .++..+++|+.
T Consensus        64 ~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~  143 (162)
T d1a9na_          64 RLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRV  143 (162)
T ss_dssp             SCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSE
T ss_pred             chhhhhcccccccCCCccccccccccccceeccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCe
Confidence            55555666666666665555556666666666666665533 345556666666666666655553   23445555555


Q ss_pred             ee
Q psy15407        293 LA  294 (604)
Q Consensus       293 L~  294 (604)
                      ||
T Consensus       144 LD  145 (162)
T d1a9na_         144 LD  145 (162)
T ss_dssp             ET
T ss_pred             eC
Confidence            54

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.67  E-value=1.2e-16  Score=151.14  Aligned_cols=181  Identities=20%  Similarity=0.233  Sum_probs=133.5

Q ss_pred             CeEEcCCCCCCcCCCCC--CccCcEEecCCCcceeecCCCccCCCCCCcEEeCCCCcceecCCCcCCCcccCCcCCCCCC
Q psy15407         97 TRVDCSQRGLKEIPKDI--PLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDNYC  174 (604)
Q Consensus        97 ~~l~cs~~~L~~iP~~l--~~~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~l~~~  174 (604)
                      +.|++.+++|++++ ++  ...+++|+|++|.|+.+.+   |..+++|++|++++|.++.++  .|.++.+|+.|.++.+
T Consensus        44 ~~L~l~~~~i~~l~-~l~~l~~L~~L~ls~n~i~~~~~---l~~l~~l~~l~~~~n~~~~i~--~l~~l~~L~~l~l~~~  117 (227)
T d1h6ua2          44 TTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAP---LKNLTKITELELSGNPLKNVS--AIAGLQSIKTLDLTST  117 (227)
T ss_dssp             CEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG---GTTCCSCCEEECCSCCCSCCG--GGTTCTTCCEEECTTS
T ss_pred             CEEECCCCCCCcch-hHhcCCCCcEeecCCceeecccc---ccccccccccccccccccccc--cccccccccccccccc
Confidence            67889999999885 35  5678999999999988864   888999999999999988875  4778888888888876


Q ss_pred             CCCccccccEEEccCCccccccccccceeeeeeccccCCccccceeecCCCCceeeccCCCCCCCCCCCeEEecCCccee
Q psy15407        175 PPKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQC  254 (604)
Q Consensus       175 ~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~i~~l~~~~f~~l~~L~~L~Ls~N~l~~  254 (604)
                      .......+.   .......+.+..........   +  ....+|++|++++|.++.+.+  |.++++|++|+|++|+|+.
T Consensus       118 ~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~---~--~~~~~L~~L~l~~n~~~~~~~--l~~l~~L~~L~Ls~n~l~~  187 (227)
T d1h6ua2         118 QITDVTPLA---GLSNLQVLYLDLNQITNISP---L--AGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISD  187 (227)
T ss_dssp             CCCCCGGGT---TCTTCCEEECCSSCCCCCGG---G--GGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC
T ss_pred             cccccchhc---cccchhhhhchhhhhchhhh---h--ccccccccccccccccccchh--hcccccceecccCCCccCC
Confidence            543322111   01111111111111111111   1  112378999999999987764  8889999999999999999


Q ss_pred             eeccccCCCCcccEEEccCCccccCCcccccCcccceeeeccC
Q psy15407        255 IDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIGG  297 (604)
Q Consensus       255 i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~  297 (604)
                      +++  |..+++|++|+|++|+|+.+++  |..+++|+.|+|++
T Consensus       188 l~~--l~~l~~L~~L~Ls~N~lt~i~~--l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         188 ISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTN  226 (227)
T ss_dssp             CGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEE
T ss_pred             Chh--hcCCCCCCEEECcCCcCCCCcc--cccCCCCCEEEeeC
Confidence            853  8889999999999999999985  78999999999873

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.66  E-value=1.3e-16  Score=147.69  Aligned_cols=155  Identities=23%  Similarity=0.286  Sum_probs=91.7

Q ss_pred             CeEEcCCCCCCcCCCCC--CccCcEEecCCCcceeecCCCccCCCCCCcEEeCCCCcceecCCCcCCCcccCCcCCCCCC
Q psy15407         97 TRVDCSQRGLKEIPKDI--PLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDNYC  174 (604)
Q Consensus        97 ~~l~cs~~~L~~iP~~l--~~~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~l~~~  174 (604)
                      +.|+++++++++++. +  ..++++|+|++|+|+.+++   |.++++|++|+|++|.+..+++  |.+++.|+.|+++++
T Consensus        43 ~~L~l~~~~i~~l~~-l~~l~nL~~L~Ls~N~l~~~~~---l~~l~~L~~L~l~~n~~~~~~~--l~~l~~L~~L~l~~~  116 (199)
T d2omxa2          43 TTLQADRLGIKSIDG-VEYLNNLTQINFSNNQLTDITP---LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNN  116 (199)
T ss_dssp             CEEECTTSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG---GTTCTTCCEEECCSSCCCCCGG--GTTCTTCSEEECCSS
T ss_pred             CEEECCCCCCCCccc-cccCCCcCcCccccccccCccc---ccCCcccccccccccccccccc--ccccccccccccccc
Confidence            456666666666542 2  3455666666666666643   5666666666666666666542  555665555555543


Q ss_pred             CCCccccccEEEccCCccccccccccceeeeeeccccCCccccceeecCCCCceeeccCCCCCCCCCCCeEEecCCccee
Q psy15407        175 PPKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQC  254 (604)
Q Consensus       175 ~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~i~~l~~~~f~~l~~L~~L~Ls~N~l~~  254 (604)
                      .......                             ... ..+|+.|++++|+|..++  .|..+++|++|++++|+|+.
T Consensus       117 ~~~~~~~-----------------------------~~~-l~~L~~L~l~~n~l~~~~--~l~~~~~L~~L~l~~n~l~~  164 (199)
T d2omxa2         117 QITDIDP-----------------------------LKN-LTNLNRLELSSNTISDIS--ALSGLTSLQQLNFSSNQVTD  164 (199)
T ss_dssp             CCCCCGG-----------------------------GTT-CTTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCCC
T ss_pred             ccccccc-----------------------------cch-hhhhHHhhhhhhhhcccc--cccccccccccccccccccC
Confidence            3221100                             001 126667777777776654  36667777777777777776


Q ss_pred             eeccccCCCCcccEEEccCCccccCCcccccCcccceee
Q psy15407        255 IDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHL  293 (604)
Q Consensus       255 i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L  293 (604)
                      ++  .|.++++|++|+|++|+|+.|+.  |..+++|+.|
T Consensus       165 l~--~l~~l~~L~~L~ls~N~i~~i~~--l~~L~~L~~L  199 (199)
T d2omxa2         165 LK--PLANLTTLERLDISSNKVSDISV--LAKLTNLESL  199 (199)
T ss_dssp             CG--GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEE
T ss_pred             Cc--cccCCCCCCEEECCCCCCCCCcc--ccCCCCCCcC
Confidence            64  36667777777777777776653  5566666554

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.64  E-value=8.7e-17  Score=136.17  Aligned_cols=118  Identities=20%  Similarity=0.291  Sum_probs=91.1

Q ss_pred             cEEecCCCcceeecCCCccCCCCCCcEEeCCCCcceecCCCcCCCcccCCcCCCCCCCCCccccccEEEccCCccccccc
Q psy15407        118 TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDNYCPPKCTCTVRVLFYDGRAGECYIA  197 (604)
Q Consensus       118 ~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~l~~~~~~~~~~l~~l~~~~~~~~~~~~  197 (604)
                      +.|+|++|+|+.++.   |..+++|++|+|++|+|+.|++ .|..++                                 
T Consensus         1 R~L~Ls~n~l~~l~~---l~~l~~L~~L~ls~N~l~~lp~-~~~~l~---------------------------------   43 (124)
T d1dcea3           1 RVLHLAHKDLTVLCH---LEQLLLVTHLDLSHNRLRALPP-ALAALR---------------------------------   43 (124)
T ss_dssp             SEEECTTSCCSSCCC---GGGGTTCCEEECCSSCCCCCCG-GGGGCT---------------------------------
T ss_pred             CEEEcCCCCCCCCcc---cccCCCCCEEECCCCccCcchh-hhhhhh---------------------------------
Confidence            468888888888853   7888999999999999988864 455553                                 


Q ss_pred             cccceeeeeeccccCCccccceeecCCCCceeeccCCCCCCCCCCCeEEecCCcceeeec-cccCCCCcccEEEccCCcc
Q psy15407        198 VELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDR-DALAGLKSLRIISLHGNDI  276 (604)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~i~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~-~~f~~l~~L~~L~Ls~N~l  276 (604)
                                         +|+.|+|++|+|+.++.  |..+++|++|+|++|+|+.++. ..|..+++|+.|+|++|+|
T Consensus        44 -------------------~L~~L~l~~N~i~~l~~--~~~l~~L~~L~l~~N~i~~~~~~~~l~~~~~L~~L~l~~N~i  102 (124)
T d1dcea3          44 -------------------CLEVLQASDNALENVDG--VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSL  102 (124)
T ss_dssp             -------------------TCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGG
T ss_pred             -------------------cccccccccccccccCc--cccccccCeEECCCCccCCCCCchhhcCCCCCCEEECCCCcC
Confidence                               67788888888888863  7888889999999999888764 5678888899999999988


Q ss_pred             ccCC---cccccCcccceee
Q psy15407        277 SMIP---EGAFADLHAITHL  293 (604)
Q Consensus       277 ~~i~---~~~f~~l~~L~~L  293 (604)
                      +.++   ...+..+++|+.|
T Consensus       103 ~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3         103 CQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             GGSSSCTTHHHHHCTTCSEE
T ss_pred             CcCccHHHHHHHHCcCcceE
Confidence            7654   3344456666654

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.63  E-value=2.5e-16  Score=161.03  Aligned_cols=184  Identities=24%  Similarity=0.271  Sum_probs=140.1

Q ss_pred             CCeEEcCCCCCCcCCC-CCCccCcEEecCCCcceeecCCCccCCCCCCcEEeCCCCcceecCCCcCCCcccCCcCCCCCC
Q psy15407         96 GTRVDCSQRGLKEIPK-DIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDNYC  174 (604)
Q Consensus        96 ~~~l~cs~~~L~~iP~-~l~~~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~l~~~  174 (604)
                      ...++++++.++.++. .....+++|+|++|.|+.++.   |..+++|+.|++++|.|+.+.+  |..+++|+.|+++.+
T Consensus       199 ~~~l~l~~n~i~~~~~~~~~~~L~~L~l~~n~l~~~~~---l~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~~  273 (384)
T d2omza2         199 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT---LASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGAN  273 (384)
T ss_dssp             CSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG---GGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSS
T ss_pred             cceeeccCCccCCCCcccccCCCCEEECCCCCCCCcch---hhcccccchhccccCccCCCCc--ccccccCCEeeccCc
Confidence            3678999999997753 346778999999999998853   8889999999999999998875  788899999999887


Q ss_pred             CCCccccccEEEccCCccccccccccceeeeeeccccCCccccceeecCCCCceeeccCCCCCCCCCCCeEEecCCccee
Q psy15407        175 PPKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQC  254 (604)
Q Consensus       175 ~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~i~~l~~~~f~~l~~L~~L~Ls~N~l~~  254 (604)
                      ....+..+..+   .....+....+.+.....+.     ...++++|+|++|+|+.+++  |..+++|++|+|++|+|+.
T Consensus       274 ~l~~~~~~~~~---~~l~~l~~~~n~l~~~~~~~-----~~~~l~~L~ls~n~l~~l~~--l~~l~~L~~L~L~~n~l~~  343 (384)
T d2omza2         274 QISNISPLAGL---TALTNLELNENQLEDISPIS-----NLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD  343 (384)
T ss_dssp             CCCCCGGGTTC---TTCSEEECCSSCCSCCGGGG-----GCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCC
T ss_pred             ccCCCCccccc---cccccccccccccccccccc-----hhcccCeEECCCCCCCCCcc--cccCCCCCEEECCCCCCCC
Confidence            65543321110   01111111111111111111     12378999999999999864  8889999999999999998


Q ss_pred             eeccccCCCCcccEEEccCCccccCCcccccCcccceeeeccCC
Q psy15407        255 IDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIGGN  298 (604)
Q Consensus       255 i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N  298 (604)
                      ++  .|..+++|++|+|++|+|+.+++  |..+++|+.|+|++|
T Consensus       344 l~--~l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L~~L~L~~N  383 (384)
T d2omza2         344 VS--SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ  383 (384)
T ss_dssp             CG--GGGGCTTCCEEECCSSCCCBCGG--GTTCTTCSEEECCCE
T ss_pred             Ch--hHcCCCCCCEEECCCCcCCCChh--hccCCCCCEeeCCCC
Confidence            85  58899999999999999999986  889999999999987

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=9.4e-17  Score=142.90  Aligned_cols=123  Identities=25%  Similarity=0.287  Sum_probs=105.2

Q ss_pred             cCCCcceeecCCCccCCCCCCcEEeCCCCcceecCCCcCCCcccCCcCCCCCCCCCccccccEEEccCCccccccccccc
Q psy15407        122 LNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDNYCPPKCTCTVRVLFYDGRAGECYIAVELF  201 (604)
Q Consensus       122 L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~  201 (604)
                      |+.|.|...+.   |.+..+|++|+|++|+|+.|+ +.|..+.                                     
T Consensus         3 Lt~~~i~~~~~---~~n~~~lr~L~L~~n~I~~i~-~~~~~l~-------------------------------------   41 (162)
T d1a9na_           3 LTAELIEQAAQ---YTNAVRDRELDLRGYKIPVIE-NLGATLD-------------------------------------   41 (162)
T ss_dssp             CCHHHHHTSCE---EECTTSCEEEECTTSCCCSCC-CGGGGTT-------------------------------------
T ss_pred             CCHHHHhhhHh---ccCcCcCcEEECCCCCCCccC-ccccccc-------------------------------------
Confidence            45555655543   788899999999999999995 4455443                                     


Q ss_pred             eeeeeeccccCCccccceeecCCCCceeeccCCCCCCCCCCCeEEecCCcceeeeccccCCCCcccEEEccCCccccCCc
Q psy15407        202 SSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPE  281 (604)
Q Consensus       202 ~~~~~~~~~~~~~~~~L~~L~Ls~N~i~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~  281 (604)
                                     +|+.|+|++|+|+.++  .|..+++|++|+|++|+|+.+++..|..+++|+.|+|++|+|+.++.
T Consensus        42 ---------------~L~~L~Ls~N~i~~l~--~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~L~~N~i~~~~~  104 (162)
T d1a9na_          42 ---------------QFDAIDFSDNEIRKLD--GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGD  104 (162)
T ss_dssp             ---------------CCSEEECCSSCCCEEC--CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCCGGG
T ss_pred             ---------------cCCEEECCCCCCCccC--CcccCcchhhhhcccccccCCCccccccccccccceecccccccccc
Confidence                           7888999999999995  48899999999999999999998888899999999999999999875


Q ss_pred             -ccccCcccceeeeccCCCccc
Q psy15407        282 -GAFADLHAITHLAIGGNPLYC  302 (604)
Q Consensus       282 -~~f~~l~~L~~L~L~~Npl~C  302 (604)
                       ..|..+++|++|+|++||+.-
T Consensus       105 l~~l~~l~~L~~L~l~~N~i~~  126 (162)
T d1a9na_         105 LDPLASLKSLTYLCILRNPVTN  126 (162)
T ss_dssp             GGGGGGCTTCCEEECCSSGGGG
T ss_pred             ccccccccccchhhcCCCcccc
Confidence             568889999999999999853

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.62  E-value=4.9e-16  Score=143.66  Aligned_cols=161  Identities=23%  Similarity=0.229  Sum_probs=131.0

Q ss_pred             EcCCCCCCcCCCC-CCccCcEEecCCCcceeecCCCccCCCCCCcEEeCCCCcceecCCCcCCCcccCCcCCCCCCCCCc
Q psy15407        100 DCSQRGLKEIPKD-IPLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDNYCPPKC  178 (604)
Q Consensus       100 ~cs~~~L~~iP~~-l~~~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~l~~~~~~~  178 (604)
                      .++.+.++.++.. -...+++|+|++|.|+.|..   +..+++|++|+|++|+|+.+++  |.++++|+.|+++.|....
T Consensus        24 ~l~~~~~~~~~~~~~l~~l~~L~l~~~~i~~l~~---l~~l~nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~~n~~~~   98 (199)
T d2omxa2          24 VLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDG---VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIAD   98 (199)
T ss_dssp             HTTCSSTTSEECHHHHTTCCEEECTTSCCCCCTT---GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC
T ss_pred             HhCCCCCCCccCHHHhcCCCEEECCCCCCCCccc---cccCCCcCcCccccccccCccc--ccCCccccccccccccccc
Confidence            4555666654321 13567899999999999853   8899999999999999999875  8999999999988876432


Q ss_pred             cccccEEEccCCccccccccccceeeeeeccccCCccccceeecCCCCceeeccCCCCCCCCCCCeEEecCCcceeeecc
Q psy15407        179 TCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRD  258 (604)
Q Consensus       179 ~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~i~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~~  258 (604)
                      +..                            + .. ...|+.|++++|.+..+++  +..+++|+.|+|++|+|..++  
T Consensus        99 ~~~----------------------------l-~~-l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~--  144 (199)
T d2omxa2          99 ITP----------------------------L-AN-LTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDIS--  144 (199)
T ss_dssp             CGG----------------------------G-TT-CTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCG--
T ss_pred             ccc----------------------------c-cc-ccccccccccccccccccc--cchhhhhHHhhhhhhhhcccc--
Confidence            211                            0 11 2388999999999988764  788999999999999999874  


Q ss_pred             ccCCCCcccEEEccCCccccCCcccccCcccceeeeccCCCcc
Q psy15407        259 ALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIGGNPLY  301 (604)
Q Consensus       259 ~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~Npl~  301 (604)
                      .|..+++|+.|++++|+|+.+++  |..+++|++|+|++|++.
T Consensus       145 ~l~~~~~L~~L~l~~n~l~~l~~--l~~l~~L~~L~ls~N~i~  185 (199)
T d2omxa2         145 ALSGLTSLQQLNFSSNQVTDLKP--LANLTTLERLDISSNKVS  185 (199)
T ss_dssp             GGTTCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred             cccccccccccccccccccCCcc--ccCCCCCCEEECCCCCCC
Confidence            58899999999999999999875  889999999999999975

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.55  E-value=8.7e-15  Score=149.34  Aligned_cols=72  Identities=18%  Similarity=0.269  Sum_probs=53.2

Q ss_pred             CeEEcCCCCCCcCCCCC--CccCcEEecCCCcceeecCCCccCCCCCCcEEeCCCCcceecCCCcCCCcccCCcCCCCCC
Q psy15407         97 TRVDCSQRGLKEIPKDI--PLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDNYC  174 (604)
Q Consensus        97 ~~l~cs~~~L~~iP~~l--~~~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~l~~~  174 (604)
                      ++|++++++|++|. ++  ..++++|+|++|+|+.|++   |++|++|++|+|++|+|+.+.+  |..+++|+.|+++.+
T Consensus        47 ~~L~l~~~~I~~l~-gl~~L~nL~~L~Ls~N~l~~l~~---l~~L~~L~~L~L~~n~i~~i~~--l~~l~~L~~L~~~~~  120 (384)
T d2omza2          47 TTLQADRLGIKSID-GVEYLNNLTQINFSNNQLTDITP---LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNN  120 (384)
T ss_dssp             CEEECCSSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG---GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSS
T ss_pred             CEEECCCCCCCCcc-ccccCCCCCEEeCcCCcCCCCcc---ccCCcccccccccccccccccc--ccccccccccccccc
Confidence            67888888888774 33  4667888888888888764   7788888888888888877754  667777777766554

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.55  E-value=5e-15  Score=147.04  Aligned_cols=199  Identities=18%  Similarity=0.094  Sum_probs=136.8

Q ss_pred             CeeCCCeEEcCCCCCCcCCCCCCccCcEEecCCCcce---eecCCCccCCCCCCcEEeCCC-CcceecCCCcCCCcccCC
Q psy15407         92 CSCDGTRVDCSQRGLKEIPKDIPLYTTELILNDNEIG---KIKSDGLFGRLPNLIKLDLRR-NQVTGIEDNAFEGENDQG  167 (604)
Q Consensus        92 C~C~~~~l~cs~~~L~~iP~~l~~~~~~L~L~~N~i~---~i~~~~~f~~l~~L~~L~Ls~-N~i~~i~~~~f~~l~~L~  167 (604)
                      |.+.|..|.|....       ....++.|+|++|.++   .||+.  |.+|++|++|+|++ |+|++.-|..|..|++|+
T Consensus        34 C~~~w~gv~C~~~~-------~~~~v~~L~L~~~~l~g~~~lp~~--l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~  104 (313)
T d1ogqa_          34 CNRTWLGVLCDTDT-------QTYRVNNLDLSGLNLPKPYPIPSS--LANLPYLNFLYIGGINNLVGPIPPAIAKLTQLH  104 (313)
T ss_dssp             TTTCSTTEEECCSS-------SCCCEEEEEEECCCCSSCEECCGG--GGGCTTCSEEEEEEETTEESCCCGGGGGCTTCS
T ss_pred             CCCcCCCeEEeCCC-------CcEEEEEEECCCCCCCCCCCCChH--HhcCccccccccccccccccccccccccccccc
Confidence            44567778886432       2245789999999997   46653  99999999999996 889865566799999999


Q ss_pred             cCCCCCCCCCc--------cccccEEEccCCcccccccccc------ceee---e----eeccccCCccccceeecCCCC
Q psy15407        168 CLGDNYCPPKC--------TCTVRVLFYDGRAGECYIAVEL------FSSR---I----RVSYYVGNYPVSTMYRDLSNN  226 (604)
Q Consensus       168 ~L~l~~~~~~~--------~~~l~~l~~~~~~~~~~~~~~~------~~~~---~----~~~~~~~~~~~~L~~L~Ls~N  226 (604)
                      +|+|++|.+..        ...++.+.+..+.....++..+      ....   .    .+..........++.+++++|
T Consensus       105 ~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n  184 (313)
T d1ogqa_         105 YLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRN  184 (313)
T ss_dssp             EEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSS
T ss_pred             hhhhccccccccccccccchhhhcccccccccccccCchhhccCcccceeeccccccccccccccccccccccccccccc
Confidence            99999885432        2335555555443222211110      0000   0    111111122223466777777


Q ss_pred             ceeeccCCCCCCCCCCCeEEecCCcceeeeccccCCCCcccEEEccCCccccCCcccccCcccceeeeccCCCcc
Q psy15407        227 QIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIGGNPLY  301 (604)
Q Consensus       227 ~i~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~Npl~  301 (604)
                      +++.+.+..+..+..+ .|+++++.+....+..+..+++|+.|++++|.++..++ .+..+++|+.|+|++|.+.
T Consensus       185 ~l~~~~~~~~~~l~~~-~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~  257 (313)
T d1ogqa_         185 RLTGKIPPTFANLNLA-FVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIY  257 (313)
T ss_dssp             EEEEECCGGGGGCCCS-EEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCE
T ss_pred             cccccccccccccccc-cccccccccccccccccccccccccccccccccccccc-ccccccccccccCccCeec
Confidence            7777777666666443 67788887777777788888999999999999987666 4788899999999999986

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.55  E-value=4e-15  Score=125.73  Aligned_cols=84  Identities=25%  Similarity=0.299  Sum_probs=76.2

Q ss_pred             cceeecCCCCceeeccCCCCCCCCCCCeEEecCCcceeeeccccCCCCcccEEEccCCccccCCc-ccccCcccceeeec
Q psy15407        217 STMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMIPE-GAFADLHAITHLAI  295 (604)
Q Consensus       217 ~L~~L~Ls~N~i~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~-~~f~~l~~L~~L~L  295 (604)
                      .|++|+|++|+|+.+++ .|..+++|+.|+|++|+|+.++  .|..+++|++|+|++|+|+.++. ..|..+++|+.|+|
T Consensus        21 ~L~~L~ls~N~l~~lp~-~~~~l~~L~~L~l~~N~i~~l~--~~~~l~~L~~L~l~~N~i~~~~~~~~l~~~~~L~~L~l   97 (124)
T d1dcea3          21 LVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNALENVD--GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNL   97 (124)
T ss_dssp             TCCEEECCSSCCCCCCG-GGGGCTTCCEEECCSSCCCCCG--GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEEC
T ss_pred             CCCEEECCCCccCcchh-hhhhhhcccccccccccccccC--ccccccccCeEECCCCccCCCCCchhhcCCCCCCEEEC
Confidence            78899999999999976 6889999999999999999985  48999999999999999999875 56888999999999


Q ss_pred             cCCCcccc
Q psy15407        296 GGNPLYCD  303 (604)
Q Consensus       296 ~~Npl~Cd  303 (604)
                      ++|++.-.
T Consensus        98 ~~N~i~~~  105 (124)
T d1dcea3          98 QGNSLCQE  105 (124)
T ss_dssp             TTSGGGGS
T ss_pred             CCCcCCcC
Confidence            99998643

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.54  E-value=8.2e-15  Score=136.44  Aligned_cols=146  Identities=26%  Similarity=0.298  Sum_probs=122.8

Q ss_pred             ccCcEEecCCCcceeecCCCccCCCCCCcEEeCCCCcceecCCCcCCCcccCCcCCCCCCCCCccccccEEEccCCcccc
Q psy15407        115 LYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDNYCPPKCTCTVRVLFYDGRAGEC  194 (604)
Q Consensus       115 ~~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~l~~~~~~~~~~l~~l~~~~~~~~~  194 (604)
                      ..+++|++++|.|+.+..   +..+++|++|+|++|+|+.+++  +..+++|+.|++++|.+..+..             
T Consensus        46 ~~L~~L~l~~~~i~~l~~---l~~l~~L~~L~L~~n~i~~l~~--~~~l~~L~~L~l~~n~i~~l~~-------------  107 (210)
T d1h6ta2          46 NSIDQIIANNSDIKSVQG---IQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDLSS-------------  107 (210)
T ss_dssp             HTCCEEECTTSCCCCCTT---GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCGGG-------------
T ss_pred             cCccEEECcCCCCCCchh---HhhCCCCCEEeCCCccccCccc--cccCcccccccccccccccccc-------------
Confidence            467999999999999853   8899999999999999999875  6789999999988876432211             


Q ss_pred             ccccccceeeeeeccccCCccccceeecCCCCceeeccCCCCCCCCCCCeEEecCCcceeeeccccCCCCcccEEEccCC
Q psy15407        195 YIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGN  274 (604)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~i~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N  274 (604)
                                     + .. ..+|+.|++++|.+..++  .+..+++|+.+++++|.|+.+.  .+..+++|++|++++|
T Consensus       108 ---------------l-~~-l~~L~~L~l~~~~~~~~~--~l~~l~~l~~l~~~~n~l~~~~--~~~~l~~L~~l~l~~n  166 (210)
T d1h6ta2         108 ---------------L-KD-LKKLKSLSLEHNGISDIN--GLVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDN  166 (210)
T ss_dssp             ---------------G-TT-CTTCCEEECTTSCCCCCG--GGGGCTTCCEEECCSSCCCCCG--GGGGCTTCSEEECCSS
T ss_pred             ---------------c-cc-cccccccccccccccccc--cccccccccccccccccccccc--cccccccccccccccc
Confidence                           0 11 138999999999998876  4788999999999999998864  4677899999999999


Q ss_pred             ccccCCcccccCcccceeeeccCCCcc
Q psy15407        275 DISMIPEGAFADLHAITHLAIGGNPLY  301 (604)
Q Consensus       275 ~l~~i~~~~f~~l~~L~~L~L~~Npl~  301 (604)
                      +|+.+++  |..+++|++|+|++|.+.
T Consensus       167 ~l~~i~~--l~~l~~L~~L~Ls~N~i~  191 (210)
T d1h6ta2         167 QISDIVP--LAGLTKLQNLYLSKNHIS  191 (210)
T ss_dssp             CCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred             ccccccc--ccCCCCCCEEECCCCCCC
Confidence            9999875  889999999999999886

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.53  E-value=1.1e-14  Score=137.40  Aligned_cols=184  Identities=19%  Similarity=0.166  Sum_probs=135.1

Q ss_pred             EEcCCCCCCcCCC-CCCccCcEEecCCCcceeecCCCccCCCCCCcEEeCCCCcceecCCCcCCCcccCCcCCCCCCCCC
Q psy15407         99 VDCSQRGLKEIPK-DIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDNYCPPK  177 (604)
Q Consensus        99 l~cs~~~L~~iP~-~l~~~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~l~~~~~~  177 (604)
                      ++++.++++.+.. .=...++.|+|.+|.|+.|+  + |..|++|++|+|++|+|+.+.+  |..+++|+.|+++++...
T Consensus        24 ~~l~~~~~~d~~~~~~l~~L~~L~l~~~~i~~l~--~-l~~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~~~n~~~   98 (227)
T d1h6ua2          24 IAAGKSNVTDTVTQADLDGITTLSAFGTGVTTIE--G-VQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLK   98 (227)
T ss_dssp             HHTTCSSTTSEECHHHHHTCCEEECTTSCCCCCT--T-GGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCS
T ss_pred             HHhCCCCcCCcCCHHHcCCcCEEECCCCCCCcch--h-HhcCCCCcEeecCCceeecccc--cccccccccccccccccc
Confidence            3455555554431 01356799999999999994  3 8999999999999999999875  899999999999988765


Q ss_pred             ccccccEEEccCCccccccccccceeeeeeccccCCccccceeecCCCCceeeccCCCCCCCCCCCeEEecCCcceeeec
Q psy15407        178 CTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDR  257 (604)
Q Consensus       178 ~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~i~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~  257 (604)
                      .+..+..   ......+.+..........   +  .....+..+.++.+.+....+  +..+++|+.|++++|++..+. 
T Consensus        99 ~i~~l~~---l~~L~~l~l~~~~~~~~~~---~--~~~~~~~~l~~~~~~~~~~~~--~~~~~~L~~L~l~~n~~~~~~-  167 (227)
T d1h6ua2          99 NVSAIAG---LQSIKTLDLTSTQITDVTP---L--AGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLT-  167 (227)
T ss_dssp             CCGGGTT---CTTCCEEECTTSCCCCCGG---G--TTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCG-
T ss_pred             ccccccc---cccccccccccccccccch---h--ccccchhhhhchhhhhchhhh--hccccccccccccccccccch-
Confidence            4433211   1112222222221111111   1  112377888899998877654  677899999999999998774 


Q ss_pred             cccCCCCcccEEEccCCccccCCcccccCcccceeeeccCCCcc
Q psy15407        258 DALAGLKSLRIISLHGNDISMIPEGAFADLHAITHLAIGGNPLY  301 (604)
Q Consensus       258 ~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~Npl~  301 (604)
                       .|..+++|+.|+|++|+|+.+++  |..+++|++|+|++|++.
T Consensus       168 -~l~~l~~L~~L~Ls~n~l~~l~~--l~~l~~L~~L~Ls~N~lt  208 (227)
T d1h6ua2         168 -PLANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQIS  208 (227)
T ss_dssp             -GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCC
T ss_pred             -hhcccccceecccCCCccCCChh--hcCCCCCCEEECcCCcCC
Confidence             48899999999999999999875  889999999999999876

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.50  E-value=2.3e-13  Score=136.63  Aligned_cols=72  Identities=17%  Similarity=0.251  Sum_probs=49.3

Q ss_pred             CCeEEcCCCCCCcCCCCCCccCcEEecCCCcceeecCCCccCCCCCCcEEeCCCCcceecCCCcCCCcccCCcCCCCCCC
Q psy15407         96 GTRVDCSQRGLKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDNYCP  175 (604)
Q Consensus        96 ~~~l~cs~~~L~~iP~~l~~~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~l~~~~  175 (604)
                      -+.|++++|+|++||.. +.+++.|++++|+++.|+.   +  .+.|++|+|++|.|+.++.  +..+.+|+.|+++++.
T Consensus        60 L~~L~Ls~N~l~~lp~~-~~~L~~L~l~~n~l~~l~~---l--p~~L~~L~L~~n~l~~lp~--~~~l~~L~~L~l~~~~  131 (353)
T d1jl5a_          60 LESLVASCNSLTELPEL-PQSLKSLLVDNNNLKALSD---L--PPLLEYLGVSNNQLEKLPE--LQNSSFLKIIDVDNNS  131 (353)
T ss_dssp             CSEEECCSSCCSSCCCC-CTTCCEEECCSSCCSCCCS---C--CTTCCEEECCSSCCSSCCC--CTTCTTCCEEECCSSC
T ss_pred             CCEEECCCCCCcccccc-hhhhhhhhhhhcccchhhh---h--ccccccccccccccccccc--hhhhccceeecccccc
Confidence            36777777777777753 4566777777777766642   1  1458888888888888764  5567788888777653

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.43  E-value=5.1e-16  Score=143.02  Aligned_cols=76  Identities=29%  Similarity=0.256  Sum_probs=53.0

Q ss_pred             cceeecCCCCceeeccCCCCCCCCCCCeEEecCCcceeeec-cccCCCCcccEEEccCCccccCCccc----------cc
Q psy15407        217 STMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDR-DALAGLKSLRIISLHGNDISMIPEGA----------FA  285 (604)
Q Consensus       217 ~L~~L~Ls~N~i~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~-~~f~~l~~L~~L~Ls~N~l~~i~~~~----------f~  285 (604)
                      +|++|+|++|+|+.+++  |..+++|+.|+|++|+|+.++. ..|..+++|+.|+|++|+|..++...          +.
T Consensus        94 ~L~~L~l~~N~i~~l~~--~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~  171 (198)
T d1m9la_          94 TLEELWISYNQIASLSG--IEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVK  171 (198)
T ss_dssp             HCCEEECSEEECCCHHH--HHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHH
T ss_pred             ccccccccccccccccc--ccccccccccccccchhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHH
Confidence            57777888888877753  6667788888888888877743 46777888888888888776554432          34


Q ss_pred             Ccccceeee
Q psy15407        286 DLHAITHLA  294 (604)
Q Consensus       286 ~l~~L~~L~  294 (604)
                      .+++|+.||
T Consensus       172 ~lp~L~~LD  180 (198)
T d1m9la_         172 RLPNLKKLD  180 (198)
T ss_dssp             HCSSCCEES
T ss_pred             HCCCcCEeC
Confidence            456666654

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.36  E-value=2.5e-15  Score=138.31  Aligned_cols=129  Identities=26%  Similarity=0.401  Sum_probs=103.0

Q ss_pred             CcEEecCCC--cceeecCCCccCCCCCCcEEeCCCCcceecCCCcCCCcccCCcCCCCCCCCCccccccEEEccCCcccc
Q psy15407        117 TTELILNDN--EIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDNYCPPKCTCTVRVLFYDGRAGEC  194 (604)
Q Consensus       117 ~~~L~L~~N--~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~l~~~~~~~~~~l~~l~~~~~~~~~  194 (604)
                      .+.+.|.++  .|+.++..  |..|++|++|+|++|+|+.|+  .|.++.                              
T Consensus        25 ~~~~~l~~~~~~i~~l~~s--l~~L~~L~~L~Ls~n~I~~i~--~l~~l~------------------------------   70 (198)
T d1m9la_          25 AEKVELHGMIPPIEKMDAT--LSTLKACKHLALSTNNIEKIS--SLSGME------------------------------   70 (198)
T ss_dssp             CSCEECCBCCTTCCCCHHH--HHHTTTCCEEECSEEEESCCC--CHHHHT------------------------------
T ss_pred             cceeeeecccCchhhhhhH--HhcccccceeECcccCCCCcc--cccCCc------------------------------
Confidence            344555544  45666543  889999999999999999885  355543                              


Q ss_pred             ccccccceeeeeeccccCCccccceeecCCCCceeeccCCCCCCCCCCCeEEecCCcceeeeccccCCCCcccEEEccCC
Q psy15407        195 YIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGN  274 (604)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~i~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N  274 (604)
                                            +|+.|+|++|.|+.++. .+..+++|++|+|++|+|+.++  .+..+++|+.|+|++|
T Consensus        71 ----------------------~L~~L~Ls~N~i~~i~~-~~~~~~~L~~L~l~~N~i~~l~--~~~~l~~L~~L~L~~N  125 (198)
T d1m9la_          71 ----------------------NLRILSLGRNLIKKIEN-LDAVADTLEELWISYNQIASLS--GIEKLVNLRVLYMSNN  125 (198)
T ss_dssp             ----------------------TCCEEECCEEEECSCSS-HHHHHHHCCEEECSEEECCCHH--HHHHHHHSSEEEESEE
T ss_pred             ----------------------cccChhhcccccccccc-cccccccccccccccccccccc--cccccccccccccccc
Confidence                                  78888999999988864 4455678999999999999984  4778899999999999


Q ss_pred             ccccCCc-ccccCcccceeeeccCCCccccc
Q psy15407        275 DISMIPE-GAFADLHAITHLAIGGNPLYCDC  304 (604)
Q Consensus       275 ~l~~i~~-~~f~~l~~L~~L~L~~Npl~CdC  304 (604)
                      +|+.++. ..|..+++|+.|+|++||+...-
T Consensus       126 ~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~  156 (198)
T d1m9la_         126 KITNWGEIDKLAALDKLEDLLLAGNPLYNDY  156 (198)
T ss_dssp             ECCCHHHHHHHTTTTTCSEEEECSSHHHHHH
T ss_pred             hhccccccccccCCCccceeecCCCccccCc
Confidence            9998865 56889999999999999986543

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.34  E-value=5.4e-12  Score=126.37  Aligned_cols=191  Identities=18%  Similarity=0.147  Sum_probs=117.4

Q ss_pred             CCCeEEcCCCCCCcCCCCCCccCcEEecCCCcceeecCCCccCCCCCCcEEeCCCCcceecCCC----------------
Q psy15407         95 DGTRVDCSQRGLKEIPKDIPLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDN----------------  158 (604)
Q Consensus        95 ~~~~l~cs~~~L~~iP~~l~~~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i~~~----------------  158 (604)
                      .-+.|++++++++.|+. +|..+++|+|++|.|+.++.   +..+++|++|++++|.++.++..                
T Consensus        79 ~L~~L~l~~n~l~~l~~-lp~~L~~L~L~~n~l~~lp~---~~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~~~~~~~~  154 (353)
T d1jl5a_          79 SLKSLLVDNNNLKALSD-LPPLLEYLGVSNNQLEKLPE---LQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEE  154 (353)
T ss_dssp             TCCEEECCSSCCSCCCS-CCTTCCEEECCSSCCSSCCC---CTTCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSS
T ss_pred             hhhhhhhhhcccchhhh-hccccccccccccccccccc---hhhhccceeeccccccccccccccccccchhhccccccc
Confidence            45799999999999985 88889999999999999974   67899999999999988765432                


Q ss_pred             --cCCCcccCCcCCCCCCCCCc--------------------------cccccEEEccCCcccccc--ccccceee---e
Q psy15407        159 --AFEGENDQGCLGDNYCPPKC--------------------------TCTVRVLFYDGRAGECYI--AVELFSSR---I  205 (604)
Q Consensus       159 --~f~~l~~L~~L~l~~~~~~~--------------------------~~~l~~l~~~~~~~~~~~--~~~~~~~~---~  205 (604)
                        .+..+..++.|.+..+....                          ...++.+.+..+......  ...+....   .
T Consensus       155 ~~~l~~l~~l~~L~l~~n~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~l~~~~~~~~  234 (353)
T d1jl5a_         155 LPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDN  234 (353)
T ss_dssp             CCCCTTCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCSCCTTCCEEECCSS
T ss_pred             cccccccccceecccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence              23333444444444432111                          112222222221111000  00000000   0


Q ss_pred             eeccccCCccccceeec--------------------CCCCceeeccCCCCCCCCCCCeEEecCCcceeeeccccCCCCc
Q psy15407        206 RVSYYVGNYPVSTMYRD--------------------LSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRDALAGLKS  265 (604)
Q Consensus       206 ~~~~~~~~~~~~L~~L~--------------------Ls~N~i~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~  265 (604)
                      .+.... ..+..+..++                    +..+.+..+.    ..+++|++|+|++|+|+.|+.    .+++
T Consensus       235 ~~~~~~-~~~~~l~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~----~~~~~L~~L~Ls~N~l~~lp~----~~~~  305 (353)
T d1jl5a_         235 YLTDLP-ELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLC----DLPPSLEELNVSNNKLIELPA----LPPR  305 (353)
T ss_dssp             CCSCCC-CCCTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEEC----CCCTTCCEEECCSSCCSCCCC----CCTT
T ss_pred             cccccc-cccccccccccccccccccccccchhcccccccCcccccc----ccCCCCCEEECCCCccCcccc----ccCC
Confidence            000000 0011223333                    3333333332    336789999999999998853    3678


Q ss_pred             ccEEEccCCccccCCcccccCcccceeeeccCCCccc
Q psy15407        266 LRIISLHGNDISMIPEGAFADLHAITHLAIGGNPLYC  302 (604)
Q Consensus       266 L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~Npl~C  302 (604)
                      |+.|+|++|+|+.||..    +.+|++|+|++|++.-
T Consensus       306 L~~L~L~~N~L~~l~~~----~~~L~~L~L~~N~L~~  338 (353)
T d1jl5a_         306 LERLIASFNHLAEVPEL----PQNLKQLHVEYNPLRE  338 (353)
T ss_dssp             CCEEECCSSCCSCCCCC----CTTCCEEECCSSCCSS
T ss_pred             CCEEECCCCcCCccccc----cCCCCEEECcCCcCCC
Confidence            99999999999998852    5689999999999874

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=8.7e-13  Score=115.96  Aligned_cols=112  Identities=24%  Similarity=0.349  Sum_probs=78.2

Q ss_pred             CCCCCeeC-CCeEEcCCCCCCcCCCCCC--ccCcEEecCCC-cceeecCCCccCCCCCCcEEeCCCCcceecCCCcCCCc
Q psy15407         88 CPSGCSCD-GTRVDCSQRGLKEIPKDIP--LYTTELILNDN-EIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGE  163 (604)
Q Consensus        88 CP~~C~C~-~~~l~cs~~~L~~iP~~l~--~~~~~L~L~~N-~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~l  163 (604)
                      ||..|.|. ...|+|++++++++|..++  ..+++|+|++| .|+.|+.. +|.+|++|+.|+|++|+|+.|++.+|.++
T Consensus         1 CP~~C~c~~~~~l~c~~~~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~-~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l   79 (156)
T d2ifga3           1 CPDACCPHGSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELR-DLRGLGELRNLTIVKSGLRFVAPDAFHFT   79 (156)
T ss_dssp             CCSSSCCSSSSCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGG-GSCSCCCCSEEECCSSCCCEECTTGGGSC
T ss_pred             CcCCCCcCCCCeEEecCCCCccCcccccCccccCeeecCCCccccccCch-hhccccccCcceeeccccCCccccccccc
Confidence            89999997 4679999999999998775  35577777554 47777653 37777777777777777777777777665


Q ss_pred             ccCCcCCCCCCCCCccccccEEEccCCccccccccccceeeeeeccccCCccccceeecCCCCceeeccCCCCCCCCCCC
Q psy15407        164 NDQGCLGDNYCPPKCTCTVRVLFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLS  243 (604)
Q Consensus       164 ~~L~~L~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~i~~l~~~~f~~l~~L~  243 (604)
                      +                                                    +|++|+|++|+|+.++...|..+ +|+
T Consensus        80 ~----------------------------------------------------~L~~L~Ls~N~l~~l~~~~~~~~-~l~  106 (156)
T d2ifga3          80 P----------------------------------------------------RLSRLNLSFNALESLSWKTVQGL-SLQ  106 (156)
T ss_dssp             S----------------------------------------------------CCCEEECCSSCCSCCCSTTTCSC-CCC
T ss_pred             c----------------------------------------------------cccceeccCCCCcccChhhhccc-ccc
Confidence            3                                                    55566666666666666666544 466


Q ss_pred             eEEecCCcce
Q psy15407        244 QLILSYNKLQ  253 (604)
Q Consensus       244 ~L~Ls~N~l~  253 (604)
                      .|+|++|.+.
T Consensus       107 ~L~L~~Np~~  116 (156)
T d2ifga3         107 ELVLSGNPLH  116 (156)
T ss_dssp             EEECCSSCCC
T ss_pred             ccccCCCccc
Confidence            6666666553

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.93  E-value=3.3e-11  Score=117.09  Aligned_cols=175  Identities=16%  Similarity=0.091  Sum_probs=99.5

Q ss_pred             ccCcEEecCCCcceeecCCCccCCCCCCcEEeCCCCcceecCCCcCCCcccCCcCCCCCCCCCc----------cccccE
Q psy15407        115 LYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIEDNAFEGENDQGCLGDNYCPPKC----------TCTVRV  184 (604)
Q Consensus       115 ~~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~l~~~~~~~----------~~~l~~  184 (604)
                      ..+++|+|+++.|+.-....+|..+++|++|+|+++.++.....+|..+++|+.|+++++....          .+.|+.
T Consensus        46 ~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~  125 (284)
T d2astb2          46 FRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDE  125 (284)
T ss_dssp             BCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCE
T ss_pred             CCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccc
Confidence            4567777777776432212346777777777777777665555556667777777777653211          112233


Q ss_pred             EEccCCccccccccccceeeeeeccccCCccccceeecCCCC--ceeecc-CCCCCCCCCCCeEEecCC-cceeeecccc
Q psy15407        185 LFYDGRAGECYIAVELFSSRIRVSYYVGNYPVSTMYRDLSNN--QIGFLS-NFTFSPLSKLSQLILSYN-KLQCIDRDAL  260 (604)
Q Consensus       185 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N--~i~~l~-~~~f~~l~~L~~L~Ls~N-~l~~i~~~~f  260 (604)
                      +.+..-.        .+ ....+..........|+.|+|++.  .++... ...+.++++|++|+|+++ .|+......+
T Consensus       126 L~ls~c~--------~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l  196 (284)
T d2astb2         126 LNLSWCF--------DF-TEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEF  196 (284)
T ss_dssp             EECCCCT--------TC-CHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGG
T ss_pred             ccccccc--------cc-ccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhh
Confidence            3222110        00 000000111111236778888753  333211 112345788888888875 4665555667


Q ss_pred             CCCCcccEEEccC-CccccCCcccccCcccceeeeccCC
Q psy15407        261 AGLKSLRIISLHG-NDISMIPEGAFADLHAITHLAIGGN  298 (604)
Q Consensus       261 ~~l~~L~~L~Ls~-N~l~~i~~~~f~~l~~L~~L~L~~N  298 (604)
                      ..+++|++|+|++ +.|+......+..+++|+.|++.++
T Consensus       197 ~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         197 FQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             GGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             cccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence            7788888888888 4666544445677788888888764

>d1edmb_ g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor IX (IXa)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.93  E-value=4.3e-10  Score=71.59  Aligned_cols=39  Identities=49%  Similarity=1.023  Sum_probs=35.6

Q ss_pred             ccCCCCCCCCCCCCCEEeeCCCCeEeeeCCCCccCCCCc
Q psy15407        512 VNVDDCVNHMCQNGGTCVDGINDYTCKCEGDFVGKFCEI  550 (604)
Q Consensus       512 ~~~~~C~~~~C~~~~~C~~~~~~y~C~C~~G~~G~~C~~  550 (604)
                      +|+|+|.++||.++|+|++..++|+|.|++||+|++||+
T Consensus         1 id~d~C~~~PC~ngg~C~~~~~~y~C~C~~g~~G~~Cei   39 (39)
T d1edmb_           1 VDGDQCESNPCLNGGSCKDDINSYECWCPFGFEGKNCEL   39 (39)
T ss_dssp             CCCCTTTTCCCCTTCEEEEETTEEEEECCTTCCSTTSCC
T ss_pred             CccccCCCCCCCCCcEEEcCCCCEEEECCCCCCCCCCCC
Confidence            367899999999999999999999999999999999973

>d2vj3a2 g.3.11.1 (A:453-491) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Neurogenic locus notch homolog protein 1, Notch1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.89  E-value=7.2e-10  Score=70.36  Aligned_cols=37  Identities=41%  Similarity=1.051  Sum_probs=34.7

Q ss_pred             CCCCCCCCCCCCCEEeeCCCCeEeeeCCCCccCCCCc
Q psy15407        514 VDDCVNHMCQNGGTCVDGINDYTCKCEGDFVGKFCEI  550 (604)
Q Consensus       514 ~~~C~~~~C~~~~~C~~~~~~y~C~C~~G~~G~~C~~  550 (604)
                      ||+|..+||.++|+|++..++|+|.|++||+|++||.
T Consensus         1 Id~C~~~PC~n~g~C~~~~~~y~C~C~~G~~G~~Ce~   37 (39)
T d2vj3a2           1 VNECVSNPCQNDATCLDQIGEFQCICMPGYEGVHCEV   37 (39)
T ss_dssp             CCTTTTCCCCSSCEEEECSSCEEEECCTTEESSSSCE
T ss_pred             CcCCcCCCCCCCCEEECCCCCEEEeCCCCCccCcCee
Confidence            5889999999999999999999999999999999985

>d2c4fl1 g.3.11.1 (L:46-82) Factor IX (IXa) {Pig (Sus scrofa) [TaxId: 9823]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor IX (IXa)
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.87  E-value=4.3e-10  Score=70.61  Aligned_cols=37  Identities=43%  Similarity=1.019  Sum_probs=34.0

Q ss_pred             cCCCCCCCCCCCCCEEeeCCCCeEeeeCCCCccCCCC
Q psy15407        513 NVDDCVNHMCQNGGTCVDGINDYTCKCEGDFVGKFCE  549 (604)
Q Consensus       513 ~~~~C~~~~C~~~~~C~~~~~~y~C~C~~G~~G~~C~  549 (604)
                      |+|+|..+||.++|+|++..++|+|.|++||+|++||
T Consensus         1 D~d~C~~~PC~ngg~C~~~~~~y~C~C~~g~~G~~Ce   37 (37)
T d2c4fl1           1 DGDQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCE   37 (37)
T ss_dssp             TCCGGGGCCCCTTCEEEEETTEEEEECCTTEESTTSC
T ss_pred             CcccCCCCCCCCCCEEECCCCCeEEECCCCCcCCCCC
Confidence            5788999999999999999999999999999999986

>d2vj3a1 g.3.11.1 (A:411-452) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Neurogenic locus notch homolog protein 1, Notch1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.84  E-value=1.3e-09  Score=70.86  Aligned_cols=38  Identities=32%  Similarity=1.015  Sum_probs=31.6

Q ss_pred             cCCCCC--CCCCCCCCEEeeCCCCeEeeeCCCCccCCCCc
Q psy15407        513 NVDDCV--NHMCQNGGTCVDGINDYTCKCEGDFVGKFCEI  550 (604)
Q Consensus       513 ~~~~C~--~~~C~~~~~C~~~~~~y~C~C~~G~~G~~C~~  550 (604)
                      ++|+|.  .+||.++|+|++..++|+|.|++||+|.+|+.
T Consensus         2 DideC~~~~~pC~n~g~C~n~~g~y~C~C~~G~~G~~Ce~   41 (42)
T d2vj3a1           2 DVDECSLGANPCEHAGKCINTLGSFECQCLQGYTGPRCEI   41 (42)
T ss_dssp             CCCTTTSSSCSSSTTCEEEECSSSEEEECCTTEESTTSCE
T ss_pred             CCccccCCCCCCCCCcEeECCCCCEEeECCCCCcCCCCcC
Confidence            677776  57888888888888888888888888888874

>d2vj3a3 g.3.11.1 (A:492-526) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Neurogenic locus notch homolog protein 1, Notch1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.79  E-value=2.6e-09  Score=66.14  Aligned_cols=35  Identities=37%  Similarity=1.140  Sum_probs=32.2

Q ss_pred             CCCCCCCCCCCCEEeeCCCCeEeeeCCCCccCCCC
Q psy15407        515 DDCVNHMCQNGGTCVDGINDYTCKCEGDFVGKFCE  549 (604)
Q Consensus       515 ~~C~~~~C~~~~~C~~~~~~y~C~C~~G~~G~~C~  549 (604)
                      |+|.++||.++|+|++..++|+|.|++||+|++||
T Consensus         1 d~C~~~PC~ngg~C~~~~~~y~C~C~~g~~G~~CE   35 (35)
T d2vj3a3           1 DECASSPCLHNGRCLDKINEFQCECPTGFTGHLCQ   35 (35)
T ss_dssp             CTTTTCCSTTTCEEEECSSCEEEECCTTEESSSSC
T ss_pred             CCCCCCCCCCCcEEECCCCCeEEECCCCCCCCCcC
Confidence            57888999999999999999999999999999986

>d1edmb_ g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor IX (IXa)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.78  E-value=3e-09  Score=67.61  Aligned_cols=37  Identities=43%  Similarity=0.977  Sum_probs=27.4

Q ss_pred             CCCcCCCCCCCCCcEEEeCCCCeEEecCCCCCCCCcc
Q psy15407        435 NIDDCLSHKCENNATCVDLIQAYECRCAPGFQGEFCQ  471 (604)
Q Consensus       435 ~~~~C~~~~C~~~~~C~~~~~~~~C~C~~g~~g~~C~  471 (604)
                      ++|+|.++||.++|+|++..++|.|.|++||+|+.|+
T Consensus         2 d~d~C~~~PC~ngg~C~~~~~~y~C~C~~g~~G~~Ce   38 (39)
T d1edmb_           2 DGDQCESNPCLNGGSCKDDINSYECWCPFGFEGKNCE   38 (39)
T ss_dssp             CCCTTTTCCCCTTCEEEEETTEEEEECCTTCCSTTSC
T ss_pred             ccccCCCCCCCCCcEEEcCCCCEEEECCCCCCCCCCC
Confidence            5677777777777777777777777777777777775

>d2vj3a2 g.3.11.1 (A:453-491) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Neurogenic locus notch homolog protein 1, Notch1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.77  E-value=2.5e-09  Score=67.84  Aligned_cols=37  Identities=41%  Similarity=1.197  Sum_probs=23.7

Q ss_pred             CCcCCCCCCCCCcEEEeCCCCeEEecCCCCCCCCccc
Q psy15407        436 IDDCLSHKCENNATCVDLIQAYECRCAPGFQGEFCQT  472 (604)
Q Consensus       436 ~~~C~~~~C~~~~~C~~~~~~~~C~C~~g~~g~~C~~  472 (604)
                      ||+|.+.||.++|+|++..++|+|.|++||+|..|+.
T Consensus         1 Id~C~~~PC~n~g~C~~~~~~y~C~C~~G~~G~~Ce~   37 (39)
T d2vj3a2           1 VNECVSNPCQNDATCLDQIGEFQCICMPGYEGVHCEV   37 (39)
T ss_dssp             CCTTTTCCCCSSCEEEECSSCEEEECCTTEESSSSCE
T ss_pred             CcCCcCCCCCCCCEEECCCCCEEEeCCCCCccCcCee
Confidence            4566666666666666666666666666666666653

>d1xkba1 g.3.11.1 (A:48-86) Factor X, N-terminal module {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor X, N-terminal module
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.74  E-value=2.5e-09  Score=67.81  Aligned_cols=36  Identities=50%  Similarity=1.141  Sum_probs=33.6

Q ss_pred             CCCCCCCCCCCCEEeeCCCCeEeeeCCCCccCCCCc
Q psy15407        515 DDCVNHMCQNGGTCVDGINDYTCKCEGDFVGKFCEI  550 (604)
Q Consensus       515 ~~C~~~~C~~~~~C~~~~~~y~C~C~~G~~G~~C~~  550 (604)
                      |+|.++||.++|+|++..++|+|.|++||+|.+||+
T Consensus         1 D~C~~~PC~ngg~C~~~~~~y~C~C~~G~~G~~Cei   36 (39)
T d1xkba1           1 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCEL   36 (39)
T ss_dssp             CTTTTCCCCSSCEECCCSSSCCEECCTTEETTTTCE
T ss_pred             CcCCCCCCCCCcEEECCCCCEEEECCCCCCcCcCeE
Confidence            578899999999999999999999999999999986

>d2vj3a1 g.3.11.1 (A:411-452) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Neurogenic locus notch homolog protein 1, Notch1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.72  E-value=4.8e-09  Score=68.18  Aligned_cols=38  Identities=26%  Similarity=0.921  Sum_probs=20.0

Q ss_pred             CCcCCCCCCCCCCCCceeecCCCeEEecCCCCcCCcCc
Q psy15407        474 TPFCAGEYNPCRNGARCLDHFSHYTCECTPGFSGVNCT  511 (604)
Q Consensus       474 ~~~C~~~~~~C~~~~~C~~~~~~~~C~C~~g~~g~~c~  511 (604)
                      +++|....++|.++|+|+++.++|+|.|++||+|..|+
T Consensus         3 ideC~~~~~pC~n~g~C~n~~g~y~C~C~~G~~G~~Ce   40 (42)
T d2vj3a1           3 VDECSLGANPCEHAGKCINTLGSFECQCLQGYTGPRCE   40 (42)
T ss_dssp             CCTTTSSSCSSSTTCEEEECSSSEEEECCTTEESTTSC
T ss_pred             CccccCCCCCCCCCcEeECCCCCEEeECCCCCcCCCCc
Confidence            44444444455555555555555555555555555554

>d2c4fl1 g.3.11.1 (L:46-82) Factor IX (IXa) {Pig (Sus scrofa) [TaxId: 9823]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor IX (IXa)
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.70  E-value=3.3e-09  Score=66.45  Aligned_cols=37  Identities=41%  Similarity=1.004  Sum_probs=23.2

Q ss_pred             CCCcCCCCCCCCCcEEEeCCCCeEEecCCCCCCCCcc
Q psy15407        435 NIDDCLSHKCENNATCVDLIQAYECRCAPGFQGEFCQ  471 (604)
Q Consensus       435 ~~~~C~~~~C~~~~~C~~~~~~~~C~C~~g~~g~~C~  471 (604)
                      |+|+|.++||.++|+|++..++|.|.|++||+|..|+
T Consensus         1 D~d~C~~~PC~ngg~C~~~~~~y~C~C~~g~~G~~Ce   37 (37)
T d2c4fl1           1 DGDQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCE   37 (37)
T ss_dssp             TCCGGGGCCCCTTCEEEEETTEEEEECCTTEESTTSC
T ss_pred             CcccCCCCCCCCCCEEECCCCCeEEECCCCCcCCCCC
Confidence            3556666666666666666666666666666666553

>d1xkba1 g.3.11.1 (A:48-86) Factor X, N-terminal module {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor X, N-terminal module
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.64  E-value=6.5e-09  Score=65.84  Aligned_cols=36  Identities=31%  Similarity=0.757  Sum_probs=32.0

Q ss_pred             CCCCCCCCCCCc-eeCCCCCCCeeeecCCCCcCCCCCCC
Q psy15407        562 SPCQHHDCKNGI-CFQPQGSNDYLCKCAPGYSGKESLLQ  599 (604)
Q Consensus       562 ~~C~~~~C~~g~-C~~~~g~~~~~C~C~~G~~G~~C~~~  599 (604)
                      |+|..++|.||+ |++..  ++|+|.|++||+|++||+.
T Consensus         1 D~C~~~PC~ngg~C~~~~--~~y~C~C~~G~~G~~Cei~   37 (39)
T d1xkba1           1 DQCETSPCQNQGKCKDGL--GEYTCTCLEGFEGKNCELF   37 (39)
T ss_dssp             CTTTTCCCCSSCEECCCS--SSCCEECCTTEETTTTCEE
T ss_pred             CcCCCCCCCCCcEEECCC--CCEEEECCCCCCcCcCeEc
Confidence            468888999877 99888  8899999999999999974

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.60  E-value=6e-10  Score=107.96  Aligned_cols=177  Identities=15%  Similarity=0.102  Sum_probs=110.7

Q ss_pred             CCeEEcCCCCCCc--CCCCC--CccCcEEecCCCcceeecCCCccCCCCCCcEEeCCCC-cceecCC-CcCCCcccCCcC
Q psy15407         96 GTRVDCSQRGLKE--IPKDI--PLYTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRN-QVTGIED-NAFEGENDQGCL  169 (604)
Q Consensus        96 ~~~l~cs~~~L~~--iP~~l--~~~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N-~i~~i~~-~~f~~l~~L~~L  169 (604)
                      -+.||++++.++.  ++.-+  ..++++|+|+++.++..... .|..+++|++|+|+++ .|+...- ..+.++++|+.|
T Consensus        48 L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~-~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L  126 (284)
T d2astb2          48 VQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVN-TLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDEL  126 (284)
T ss_dssp             CCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHH-HHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEE
T ss_pred             CCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHH-HHhcCCCCcCccccccccccccccchhhHHHHhcccc
Confidence            4789999887763  32211  35789999999998653222 3788999999999994 6654221 124567899999


Q ss_pred             CCCCCCCCccccccEEE--ccCCcccccccccc-ceeeeeeccccCCccccceeecCCCC-ceeeccCCCCCCCCCCCeE
Q psy15407        170 GDNYCPPKCTCTVRVLF--YDGRAGECYIAVEL-FSSRIRVSYYVGNYPVSTMYRDLSNN-QIGFLSNFTFSPLSKLSQL  245 (604)
Q Consensus       170 ~l~~~~~~~~~~l~~l~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~L~~L~Ls~N-~i~~l~~~~f~~l~~L~~L  245 (604)
                      +++++.......+....  .......+.+.... ......+..+....+ +|++|+|+++ .|+......+..+++|++|
T Consensus       127 ~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~-~L~~L~L~~~~~itd~~~~~l~~~~~L~~L  205 (284)
T d2astb2         127 NLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCP-NLVHLDLSDSVMLKNDCFQEFFQLNYLQHL  205 (284)
T ss_dssp             ECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCT-TCSEEECTTCTTCCGGGGGGGGGCTTCCEE
T ss_pred             ccccccccccccchhhhcccccccchhhhcccccccccccccccccccc-cccccccccccCCCchhhhhhcccCcCCEE
Confidence            99987532211111100  01122222221100 000011111212223 8999999986 4776555677889999999


Q ss_pred             EecC-CcceeeeccccCCCCcccEEEccCC
Q psy15407        246 ILSY-NKLQCIDRDALAGLKSLRIISLHGN  274 (604)
Q Consensus       246 ~Ls~-N~l~~i~~~~f~~l~~L~~L~Ls~N  274 (604)
                      +|++ +.|+......+..+++|+.|+++++
T Consensus       206 ~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         206 SLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             ECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             ECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence            9999 5677655567788999999999987

>d2vj3a3 g.3.11.1 (A:492-526) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Neurogenic locus notch homolog protein 1, Notch1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.58  E-value=2.1e-08  Score=61.88  Aligned_cols=35  Identities=43%  Similarity=1.152  Sum_probs=20.3

Q ss_pred             CcCCCCCCCCCcEEEeCCCCeEEecCCCCCCCCcc
Q psy15407        437 DDCLSHKCENNATCVDLIQAYECRCAPGFQGEFCQ  471 (604)
Q Consensus       437 ~~C~~~~C~~~~~C~~~~~~~~C~C~~g~~g~~C~  471 (604)
                      |+|.++||.++|+|++..++|.|.|++||+|..||
T Consensus         1 d~C~~~PC~ngg~C~~~~~~y~C~C~~g~~G~~CE   35 (35)
T d2vj3a3           1 DECASSPCLHNGRCLDKINEFQCECPTGFTGHLCQ   35 (35)
T ss_dssp             CTTTTCCSTTTCEEEECSSCEEEECCTTEESSSSC
T ss_pred             CCCCCCCCCCCcEEECCCCCeEEECCCCCCCCCcC
Confidence            34555566666666665555666666666665553

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.56  E-value=3e-09  Score=105.95  Aligned_cols=79  Identities=13%  Similarity=0.083  Sum_probs=40.8

Q ss_pred             CeEEcCCCCCCc-----CCCCC--CccCcEEecCCCcceeecCC---------CccCCCCCCcEEeCCCCcceecCCC--
Q psy15407         97 TRVDCSQRGLKE-----IPKDI--PLYTTELILNDNEIGKIKSD---------GLFGRLPNLIKLDLRRNQVTGIEDN--  158 (604)
Q Consensus        97 ~~l~cs~~~L~~-----iP~~l--~~~~~~L~L~~N~i~~i~~~---------~~f~~l~~L~~L~Ls~N~i~~i~~~--  158 (604)
                      +.|++++|.|..     |-..+  ...++.|+|+++.+..+...         .++...++|+.|+|++|.|......  
T Consensus        34 ~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l  113 (344)
T d2ca6a1          34 KEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPL  113 (344)
T ss_dssp             CEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHH
T ss_pred             CEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccccccccccccch
Confidence            456777665532     11112  24556677766554332211         1144566777777777766553221  


Q ss_pred             --cCCCcccCCcCCCCCCC
Q psy15407        159 --AFEGENDQGCLGDNYCP  175 (604)
Q Consensus       159 --~f~~l~~L~~L~l~~~~  175 (604)
                        .+...++|+.|++++|.
T Consensus       114 ~~~l~~~~~L~~L~l~~n~  132 (344)
T d2ca6a1         114 IDFLSKHTPLEHLYLHNNG  132 (344)
T ss_dssp             HHHHHHCTTCCEEECCSSC
T ss_pred             hhhhcccccchheeccccc
Confidence              22344566667666664

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.56  E-value=7e-10  Score=97.65  Aligned_cols=63  Identities=25%  Similarity=0.163  Sum_probs=33.9

Q ss_pred             cceeecCCCCceeeccC--CCCCCCCCCCeEEecCCcceeeeccccCCCCcccEEEccCCccccC
Q psy15407        217 STMYRDLSNNQIGFLSN--FTFSPLSKLSQLILSYNKLQCIDRDALAGLKSLRIISLHGNDISMI  279 (604)
Q Consensus       217 ~L~~L~Ls~N~i~~l~~--~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i  279 (604)
                      .|++|+|++|+|+.+.+  ..+..+++|+.|+|++|+|+.++.-.+.....|+.|+|++|.|...
T Consensus        66 ~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~  130 (162)
T d1koha1          66 ELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDT  130 (162)
T ss_dssp             TCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSS
T ss_pred             CCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcC
Confidence            55555666666655542  2344555666666666666655443333334556666666665543

>d1g1ta2 g.3.11.1 (A:119-157) E-selectin, EGF-domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: E-selectin, EGF-domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.53  E-value=1.3e-08  Score=64.58  Aligned_cols=36  Identities=47%  Similarity=1.062  Sum_probs=33.3

Q ss_pred             CCCCCCCCCCCCEEeeCCCCeEeeeCCCCccCCCCc
Q psy15407        515 DDCVNHMCQNGGTCVDGINDYTCKCEGDFVGKFCEI  550 (604)
Q Consensus       515 ~~C~~~~C~~~~~C~~~~~~y~C~C~~G~~G~~C~~  550 (604)
                      +.|.++||.++|+|++..++|+|.|++||+|++||.
T Consensus         2 ~~C~~~pC~ngg~C~~~~~~~~C~C~~g~~G~~Ce~   37 (39)
T d1g1ta2           2 AACTNTSCSGHGECVETINNYTCKCDPGFSGLKCEQ   37 (39)
T ss_dssp             CCCCTTGGGGSEEEEEETTEEEEEECTTEESTTSCE
T ss_pred             CcccCCcCCCCcEEECCCCCEEEeCCCCCcCcCcCc
Confidence            568889999999999999999999999999999985

>d1autl1 g.3.11.1 (L:49-96) Activated protein c (autoprothrombin IIa) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Activated protein c (autoprothrombin IIa)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.53  E-value=1.7e-08  Score=66.90  Aligned_cols=40  Identities=25%  Similarity=0.723  Sum_probs=35.5

Q ss_pred             CCCCCCCCCCCCCCceeCCCCCCCeeeecCCCCcCCCCCCCc
Q psy15407        559 PQTSPCQHHDCKNGICFQPQGSNDYLCKCAPGYSGKESLLQQ  600 (604)
Q Consensus       559 ~~~~~C~~~~C~~g~C~~~~g~~~~~C~C~~G~~G~~C~~~~  600 (604)
                      +..++|..++|.||.|++..  ++|+|.|++||+|++||...
T Consensus         6 p~~~~C~~~PC~nG~C~~~~--~~y~C~C~~G~~G~~Ce~~I   45 (48)
T d1autl1           6 PLEHPCASLCCGHGTCIDGI--GSFSCDCRSGWEGRFCQREV   45 (48)
T ss_dssp             SSCCSSSSTTTTSEEECCCS--SCCCEEECTTEESTTSCEEC
T ss_pred             CCCCcccCCCCCCCEEECCC--CCCeEeCCCCCcCCCccccc
Confidence            44789999999998899988  78999999999999999754

>d1g1sa2 g.3.11.1 (A:119-158) E-selectin, EGF-domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: E-selectin, EGF-domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.53  E-value=2e-08  Score=64.04  Aligned_cols=36  Identities=36%  Similarity=0.933  Sum_probs=33.6

Q ss_pred             CCCCCCCCCCCCEEeeCCCCeEeeeCCCCccCCCCc
Q psy15407        515 DDCVNHMCQNGGTCVDGINDYTCKCEGDFVGKFCEI  550 (604)
Q Consensus       515 ~~C~~~~C~~~~~C~~~~~~y~C~C~~G~~G~~C~~  550 (604)
                      +.|..+||.++|+|++..++|+|.|++||+|++|+.
T Consensus         2 ~~C~~~pC~ngg~C~~~~~~y~C~C~~g~~G~~Ce~   37 (40)
T d1g1sa2           2 ASCQDMSCSKQGECLETIGNYTCSCYPGFYGPECEY   37 (40)
T ss_dssp             CCCCTTGGGGSEEEEECSSSEEEEECTTEESTTSCE
T ss_pred             CcccCCcCCCCcEEECCCCCeEEeCCCCccCCCCCC
Confidence            568889999999999999999999999999999985

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.51  E-value=2e-09  Score=107.24  Aligned_cols=188  Identities=13%  Similarity=0.065  Sum_probs=100.8

Q ss_pred             ccCcEEecCCCcceeecCC---CccCCCCCCcEEeCCCCcceecCCCc-------------CCCcccCCcCCCCCCCCCc
Q psy15407        115 LYTTELILNDNEIGKIKSD---GLFGRLPNLIKLDLRRNQVTGIEDNA-------------FEGENDQGCLGDNYCPPKC  178 (604)
Q Consensus       115 ~~~~~L~L~~N~i~~i~~~---~~f~~l~~L~~L~Ls~N~i~~i~~~~-------------f~~l~~L~~L~l~~~~~~~  178 (604)
                      ..+++|+|++|.|+.....   .++...++|++|+|++|.|.......             ....+.|+.|.++.+.+..
T Consensus        93 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~  172 (344)
T d2ca6a1          93 PKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLEN  172 (344)
T ss_dssp             TTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTG
T ss_pred             CCcccccccccccccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccccc
Confidence            3467888888887542111   12456788888888888764321111             1234456666666654321


Q ss_pred             ccccc---EEEccCCccccccccccceee--e-eeccccCCccccceeecCCCCceeecc----CCCCCCCCCCCeEEec
Q psy15407        179 TCTVR---VLFYDGRAGECYIAVELFSSR--I-RVSYYVGNYPVSTMYRDLSNNQIGFLS----NFTFSPLSKLSQLILS  248 (604)
Q Consensus       179 ~~~l~---~l~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~L~~L~Ls~N~i~~l~----~~~f~~l~~L~~L~Ls  248 (604)
                      .....   .+........+.+..+.+...  . .+....... .+|+.|+|++|.|+...    ...+...++|++|+|+
T Consensus       173 ~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~-~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls  251 (344)
T d2ca6a1         173 GSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYC-QELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLN  251 (344)
T ss_dssp             GGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGC-TTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECT
T ss_pred             cccccccchhhhhhhhcccccccccccccccccchhhhhcch-hhhcccccccccccccccccccccccccccchhhhhh
Confidence            11000   000011111222222111110  0 011111112 37888999999876531    2346678889999999


Q ss_pred             CCcceeeeccc----cC--CCCcccEEEccCCccccC-----CcccccCcccceeeeccCCCcccc
Q psy15407        249 YNKLQCIDRDA----LA--GLKSLRIISLHGNDISMI-----PEGAFADLHAITHLAIGGNPLYCD  303 (604)
Q Consensus       249 ~N~l~~i~~~~----f~--~l~~L~~L~Ls~N~l~~i-----~~~~f~~l~~L~~L~L~~Npl~Cd  303 (604)
                      +|.|+......    +.  ....|++|+|++|+|+..     .......+++|++|+|++|.+.-+
T Consensus       252 ~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~~~  317 (344)
T d2ca6a1         252 DCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEE  317 (344)
T ss_dssp             TCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTT
T ss_pred             cCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCCCc
Confidence            99887642222    22  235788999999988642     221112456788999999988643

>d1tpga1 g.3.11.1 (A:51-91) Plasminogen activator (tissue-type), t-PA {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Plasminogen activator (tissue-type), t-PA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.46  E-value=5.9e-08  Score=62.26  Aligned_cols=38  Identities=32%  Similarity=0.778  Sum_probs=31.6

Q ss_pred             CCCCCCCCCc-eeCCCCCCCeeeecCCCCcCCCCCCCcc
Q psy15407        564 CQHHDCKNGI-CFQPQGSNDYLCKCAPGYSGKESLLQQT  601 (604)
Q Consensus       564 C~~~~C~~g~-C~~~~g~~~~~C~C~~G~~G~~C~~~~~  601 (604)
                      |..++|.||+ |+.....++|+|+|++||+|++||+...
T Consensus         1 C~~nPC~ngG~C~~~~~~~~y~C~C~~g~~G~~Ce~~~~   39 (41)
T d1tpga1           1 CSEPRCFNGGTCQQALYFSDFVCQCPEGFAGKSCEIDTR   39 (41)
T ss_dssp             CSSCCSCTTCEEEEESSSSCEEEECCTTCBSSSCCBCSS
T ss_pred             CcCCCCCCCCEEecCCCCCCeEECCCCCCCCCCcCcCcC
Confidence            5677888887 9976544789999999999999998754

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.45  E-value=2.9e-09  Score=93.56  Aligned_cols=99  Identities=19%  Similarity=0.200  Sum_probs=70.4

Q ss_pred             cEEecCCCcceeecCCCccCCCCCCcEEeCCCCcceecCC--CcCCCcccCCcCCCCCCCCCccccccEEEccCCccccc
Q psy15407        118 TELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTGIED--NAFEGENDQGCLGDNYCPPKCTCTVRVLFYDGRAGECY  195 (604)
Q Consensus       118 ~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~i~~--~~f~~l~~L~~L~l~~~~~~~~~~l~~l~~~~~~~~~~  195 (604)
                      ..|.+..+.+..++.  ++..+++|++|+|++|+|+.+++  ..|..++                               
T Consensus        45 ~~l~~~~~~~~~l~~--~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~-------------------------------   91 (162)
T d1koha1          45 VVLNRRSSMAATLRI--IEENIPELLSLNLSNNRLYRLDDMSSIVQKAP-------------------------------   91 (162)
T ss_dssp             CCTTSHHHHHHHHHH--HHHHCTTCCCCCCCSSCCCCCSGGGTHHHHST-------------------------------
T ss_pred             hhcchhhhHhhhhHH--HHHhCCCCCEeeCCCccccCCchhHHHHhhCC-------------------------------
Confidence            345555555555542  36788999999999999998864  2333332                               


Q ss_pred             cccccceeeeeeccccCCccccceeecCCCCceeeccCCCCCCCCCCCeEEecCCcceeeecc-------ccCCCCcccE
Q psy15407        196 IAVELFSSRIRVSYYVGNYPVSTMYRDLSNNQIGFLSNFTFSPLSKLSQLILSYNKLQCIDRD-------ALAGLKSLRI  268 (604)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~i~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~~-------~f~~l~~L~~  268 (604)
                                           +|+.|+|++|+|+.+++..+....+|+.|+|++|.|......       .+..+++|+.
T Consensus        92 ---------------------~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~i~~~~P~L~~  150 (162)
T d1koha1          92 ---------------------NLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAIRERFPKLLR  150 (162)
T ss_dssp             ---------------------TCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHHHHTTSTTCCE
T ss_pred             ---------------------cccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHHHHHHHCCCCCE
Confidence                                 778888999999888775555566799999999998765432       2566788887


Q ss_pred             EE
Q psy15407        269 IS  270 (604)
Q Consensus       269 L~  270 (604)
                      ||
T Consensus       151 LD  152 (162)
T d1koha1         151 LD  152 (162)
T ss_dssp             ET
T ss_pred             EC
Confidence            75

>d1tpga1 g.3.11.1 (A:51-91) Plasminogen activator (tissue-type), t-PA {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Plasminogen activator (tissue-type), t-PA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.42  E-value=1.2e-07  Score=60.86  Aligned_cols=37  Identities=30%  Similarity=0.849  Sum_probs=21.8

Q ss_pred             CcCCCCCCCCeeecCC-CCceeeeCCCCCcCCCCcccC
Q psy15407        361 CYKSPCTNQGVCEPLP-ERQYQCRCTPGYHGQHCEFMI  397 (604)
Q Consensus       361 C~~~~C~~~g~C~~~~-~~~~~C~C~~g~~G~~c~~~~  397 (604)
                      |.++||.|+|+|+... .+.|.|.|++||+|..|+.++
T Consensus         1 C~~nPC~ngG~C~~~~~~~~y~C~C~~g~~G~~Ce~~~   38 (41)
T d1tpga1           1 CSEPRCFNGGTCQQALYFSDFVCQCPEGFAGKSCEIDT   38 (41)
T ss_dssp             CSSCCSCTTCEEEEESSSSCEEEECCTTCBSSSCCBCS
T ss_pred             CcCCCCCCCCEEecCCCCCCeEECCCCCCCCCCcCcCc
Confidence            4556666666666432 235666666666666666544

>d1g1ta2 g.3.11.1 (A:119-157) E-selectin, EGF-domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: E-selectin, EGF-domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.41  E-value=2.8e-08  Score=63.01  Aligned_cols=34  Identities=38%  Similarity=1.109  Sum_probs=18.0

Q ss_pred             cCCCCCCCCCcEEEeCCCCeEEecCCCCCCCCcc
Q psy15407        438 DCLSHKCENNATCVDLIQAYECRCAPGFQGEFCQ  471 (604)
Q Consensus       438 ~C~~~~C~~~~~C~~~~~~~~C~C~~g~~g~~C~  471 (604)
                      .|.++||.++|+|++..++|.|.|++||.|..|+
T Consensus         3 ~C~~~pC~ngg~C~~~~~~~~C~C~~g~~G~~Ce   36 (39)
T d1g1ta2           3 ACTNTSCSGHGECVETINNYTCKCDPGFSGLKCE   36 (39)
T ss_dssp             CCCTTGGGGSEEEEEETTEEEEEECTTEESTTSC
T ss_pred             cccCCcCCCCcEEECCCCCEEEeCCCCCcCcCcC
Confidence            3445555555555555555555555555555554

>d1autl1 g.3.11.1 (L:49-96) Activated protein c (autoprothrombin IIa) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Activated protein c (autoprothrombin IIa)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.36  E-value=1.1e-07  Score=62.84  Aligned_cols=38  Identities=34%  Similarity=1.016  Sum_probs=34.3

Q ss_pred             cCCCCCCCCCCCCCEEeeCCCCeEeeeCCCCccCCCCcC
Q psy15407        513 NVDDCVNHMCQNGGTCVDGINDYTCKCEGDFVGKFCEIA  551 (604)
Q Consensus       513 ~~~~C~~~~C~~~~~C~~~~~~y~C~C~~G~~G~~C~~~  551 (604)
                      ..++|.++||.+ |+|++..++|+|.|++||+|++|+..
T Consensus         7 ~~~~C~~~PC~n-G~C~~~~~~y~C~C~~G~~G~~Ce~~   44 (48)
T d1autl1           7 LEHPCASLCCGH-GTCIDGIGSFSCDCRSGWEGRFCQRE   44 (48)
T ss_dssp             SCCSSSSTTTTS-EEECCCSSCCCEEECTTEESTTSCEE
T ss_pred             CCCcccCCCCCC-CEEECCCCCCeEeCCCCCcCCCcccc
Confidence            457899999987 79999999999999999999999964

>d1q4ga2 g.3.11.1 (A:32-73) Prostaglandin H2 synthase-1, EGF-like module {Sheep (Ovis aries) [TaxId: 9940]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Prostaglandin H2 synthase-1, EGF-like module
species: Sheep (Ovis aries) [TaxId: 9940]

Probab=98.33  E-value=1.1e-07  Score=61.30  Aligned_cols=37  Identities=38%  Similarity=0.985  Sum_probs=32.5

Q ss_pred             CCCCCCCCCCCCCEEee-CCCCeEeeeCC-CCccCCCCc
Q psy15407        514 VDDCVNHMCQNGGTCVD-GINDYTCKCEG-DFVGKFCEI  550 (604)
Q Consensus       514 ~~~C~~~~C~~~~~C~~-~~~~y~C~C~~-G~~G~~C~~  550 (604)
                      +|.|..+||.++|+|++ ..++|+|.|+. ||.|.+||.
T Consensus         2 id~C~~nPC~ngG~C~~~~~~~y~C~C~~~G~~G~~Ce~   40 (42)
T d1q4ga2           2 VNPCCYYPCQHQGICVRFGLDRYQCDCTRTGYSGPNCTI   40 (42)
T ss_dssp             CCGGGGCCCCTTCEEEEETTTEEEEECTTSSEETTTTCE
T ss_pred             CccCcCCCCCCCCEeeeCCCCCEEEECCCCCcCCcCcCc
Confidence            67888999999999986 46889999986 999999986

>d1g1sa2 g.3.11.1 (A:119-158) E-selectin, EGF-domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: E-selectin, EGF-domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.31  E-value=9.4e-08  Score=60.88  Aligned_cols=34  Identities=35%  Similarity=1.018  Sum_probs=20.3

Q ss_pred             cCCCCCCCCCcEEEeCCCCeEEecCCCCCCCCcc
Q psy15407        438 DCLSHKCENNATCVDLIQAYECRCAPGFQGEFCQ  471 (604)
Q Consensus       438 ~C~~~~C~~~~~C~~~~~~~~C~C~~g~~g~~C~  471 (604)
                      .|.++||.++|+|++..++|+|.|++||.|..|+
T Consensus         3 ~C~~~pC~ngg~C~~~~~~y~C~C~~g~~G~~Ce   36 (40)
T d1g1sa2           3 SCQDMSCSKQGECLETIGNYTCSCYPGFYGPECE   36 (40)
T ss_dssp             CCCTTGGGGSEEEEECSSSEEEEECTTEESTTSC
T ss_pred             cccCCcCCCCcEEECCCCCeEEeCCCCccCCCCC
Confidence            4555566666666666566666666666666554

>d1cvua2 g.3.11.1 (A:33-73) Prostaglandin H2 synthase-1, EGF-like module {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Prostaglandin H2 synthase-1, EGF-like module
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.30  E-value=1.7e-07  Score=60.07  Aligned_cols=37  Identities=41%  Similarity=1.022  Sum_probs=28.1

Q ss_pred             CCCcCCCCCCCCeeecCCCCceeeeCC-CCCcCCCCcc
Q psy15407        359 NACYKSPCTNQGVCEPLPERQYQCRCT-PGYHGQHCEF  395 (604)
Q Consensus       359 ~~C~~~~C~~~g~C~~~~~~~~~C~C~-~g~~G~~c~~  395 (604)
                      ++|.++||.|+|+|+....+.|+|.|+ +||+|..|+.
T Consensus         2 d~C~~~PC~ngG~C~~~~~~~y~C~C~~~gy~G~~Ce~   39 (41)
T d1cvua2           2 NPCCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENCTT   39 (41)
T ss_dssp             CTTTTCCCCTTCEEEEEETTEEEEECTTSSEETTTTCE
T ss_pred             CcCcCCCCCCCCEEEECCCCCEEEeCcCCCcCCcCcCc
Confidence            577888888888887654467888886 5888888874

>d1cvua2 g.3.11.1 (A:33-73) Prostaglandin H2 synthase-1, EGF-like module {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Prostaglandin H2 synthase-1, EGF-like module
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.28  E-value=2.1e-07  Score=59.57  Aligned_cols=36  Identities=33%  Similarity=0.967  Sum_probs=31.2

Q ss_pred             CCCCCCCCCCCCEEeeC-CCCeEeeeC-CCCccCCCCc
Q psy15407        515 DDCVNHMCQNGGTCVDG-INDYTCKCE-GDFVGKFCEI  550 (604)
Q Consensus       515 ~~C~~~~C~~~~~C~~~-~~~y~C~C~-~G~~G~~C~~  550 (604)
                      |+|..+||.++|+|++. .++|+|.|+ +||.|.+|+.
T Consensus         2 d~C~~~PC~ngG~C~~~~~~~y~C~C~~~gy~G~~Ce~   39 (41)
T d1cvua2           2 NPCCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENCTT   39 (41)
T ss_dssp             CTTTTCCCCTTCEEEEEETTEEEEECTTSSEETTTTCE
T ss_pred             CcCcCCCCCCCCEEEECCCCCEEEeCcCCCcCCcCcCc
Confidence            67888999999999864 678999996 6999999986

>d1q4ga2 g.3.11.1 (A:32-73) Prostaglandin H2 synthase-1, EGF-like module {Sheep (Ovis aries) [TaxId: 9940]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Prostaglandin H2 synthase-1, EGF-like module
species: Sheep (Ovis aries) [TaxId: 9940]

Probab=98.22  E-value=3.2e-07  Score=59.04  Aligned_cols=37  Identities=32%  Similarity=1.032  Sum_probs=17.2

Q ss_pred             CCCCCCCCCCCCCeeeeCCCCceEeeCCC-CCcCCCCC
Q psy15407        397 IDACYGNPCRNSGTCKLLEEGRFNCECAP-GYTGDRCE  433 (604)
Q Consensus       397 ~~~C~~~~C~~~~~C~~~~~~~~~C~C~~-g~~g~~C~  433 (604)
                      +++|..+||.++|+|+....++|.|.|+. ||+|..|+
T Consensus         2 id~C~~nPC~ngG~C~~~~~~~y~C~C~~~G~~G~~Ce   39 (42)
T d1q4ga2           2 VNPCCYYPCQHQGICVRFGLDRYQCDCTRTGYSGPNCT   39 (42)
T ss_dssp             CCGGGGCCCCTTCEEEEETTTEEEEECTTSSEETTTTC
T ss_pred             CccCcCCCCCCCCEeeeCCCCCEEEECCCCCcCCcCcC
Confidence            34444455555555543223445555543 45555544

>d1haea_ g.3.11.1 (A:) Heregulin-alpha, EGF-like domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Heregulin-alpha, EGF-like domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.22  E-value=3.2e-07  Score=65.36  Aligned_cols=51  Identities=31%  Similarity=0.624  Sum_probs=39.6

Q ss_pred             cccCCCCcCCCCCCCCeeec----CCCCceeeeCCCCCcCCCCcccCCCCCCCCC
Q psy15407        355 LSKCNACYKSPCTNQGVCEP----LPERQYQCRCTPGYHGQHCEFMIDACYGNPC  405 (604)
Q Consensus       355 ~~~c~~C~~~~C~~~g~C~~----~~~~~~~C~C~~g~~G~~c~~~~~~C~~~~C  405 (604)
                      ..+|++|.++||.|+|+|..    ...+.|.|.|+.||+|++|+..+..+...+.
T Consensus         3 ~~~c~ec~~~~C~NgG~C~~~~~~~~~~~y~C~C~~gy~G~~Ce~~~~~~~~~~~   57 (63)
T d1haea_           3 LVKCAEKEKTFCVNGGECFMVKDLSNPSRYLCKCQPGFTGARCTENVPMKVQNQE   57 (63)
T ss_dssp             EEECCHHHHTTSCTTCEEEEEESSSSSCCEEEECCTTEESTTSCEECCSSCTTCT
T ss_pred             cccCCCCcCCcCCCCCEEeecccccCCCCEEeECCCCCCCCCcCCCCCccccCCc
Confidence            45788999999999999963    2335799999999999999987766655443

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.09  E-value=1.2e-07  Score=97.43  Aligned_cols=39  Identities=15%  Similarity=0.089  Sum_probs=24.5

Q ss_pred             cCcEEecCCCcceeecCCCccCCCCCCcEEeCCCCccee
Q psy15407        116 YTTELILNDNEIGKIKSDGLFGRLPNLIKLDLRRNQVTG  154 (604)
Q Consensus       116 ~~~~L~L~~N~i~~i~~~~~f~~l~~L~~L~Ls~N~i~~  154 (604)
                      ++++|+|+.|+|+...-...+..+++|++|+|++|.|+.
T Consensus         3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~   41 (460)
T d1z7xw1           3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTE   41 (460)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCH
T ss_pred             CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCH
Confidence            456777777777654322335566777777777776653

>d3egfa_ g.3.11.1 (A:) Epidermal growth factor, EGF {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Epidermal growth factor, EGF
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.07  E-value=1.3e-06  Score=59.38  Aligned_cols=41  Identities=27%  Similarity=0.609  Sum_probs=32.5

Q ss_pred             CCCCCCCCCCCCc-eeCCCCCCCeeeecCCCCcCCCCCCCcc
Q psy15407        561 TSPCQHHDCKNGI-CFQPQGSNDYLCKCAPGYSGKESLLQQT  601 (604)
Q Consensus       561 ~~~C~~~~C~~g~-C~~~~g~~~~~C~C~~G~~G~~C~~~~~  601 (604)
                      ..+|....|.||+ |+...+..+|+|.|++||+|++||.++.
T Consensus         6 C~~c~~~~C~NgG~C~~~~~~~~~~C~C~~gy~G~~Ce~~~l   47 (53)
T d3egfa_           6 CPSSYDGYCLNGGVCMHIESLDSYTCNCVIGYSGDRCQTRDL   47 (53)
T ss_dssp             CCTTSSCCSCSSCEEEEESSSSCEEEECCTTCCSSSSCCCSC
T ss_pred             CCCCCCCCCCCCcEeeccCCCCCeEeECCCCCcCCCCccCCc
Confidence            3456777898866 9865544789999999999999998754

>d1nqlb_ g.3.11.1 (B:) Epidermal growth factor, EGF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Epidermal growth factor, EGF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.03  E-value=8.9e-07  Score=58.78  Aligned_cols=40  Identities=33%  Similarity=0.886  Sum_probs=30.4

Q ss_pred             ccCCCCcCCCCCCCCeeecCC-CCceeeeCCCCCcCCCCcc
Q psy15407        356 SKCNACYKSPCTNQGVCEPLP-ERQYQCRCTPGYHGQHCEF  395 (604)
Q Consensus       356 ~~c~~C~~~~C~~~g~C~~~~-~~~~~C~C~~g~~G~~c~~  395 (604)
                      ++|++|.++||.|+|+|...+ ...|+|.|+.||+|.+|+.
T Consensus         2 s~C~~c~~~~C~ngG~C~~~~~~~~~~C~C~~gy~G~~Ce~   42 (48)
T d1nqlb_           2 SECPLSHDGYCLHDGVCMYIEALDKYACNCVVGYIGERCQY   42 (48)
T ss_dssp             EECCSTTCCEECTTCEEEEETTTTEEEEEECTTEESTTSCE
T ss_pred             CcCCCCCCCCCCCCcEEeeeCCCCCeEEeCCCCcccCCCCc
Confidence            457788888888888887533 2468888888888888874

>d1emoa1 g.3.11.1 (A:2124-2166) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.01  E-value=6.1e-07  Score=58.07  Aligned_cols=34  Identities=24%  Similarity=0.663  Sum_probs=25.3

Q ss_pred             ccCCCCCCCCCCCCCEEeeCCCCeEeeeCCCCcc
Q psy15407        512 VNVDDCVNHMCQNGGTCVDGINDYTCKCEGDFVG  545 (604)
Q Consensus       512 ~~~~~C~~~~C~~~~~C~~~~~~y~C~C~~G~~G  545 (604)
                      +|+|||...++..+++|++++|+|+|.|++||++
T Consensus         3 vDidEC~~~~~~~~~~C~Nt~Gsy~C~C~~Gy~~   36 (43)
T d1emoa1           3 VDMDECKEPDVCKHGQCINTDGSYRCECPFGYIL   36 (43)
T ss_dssp             CCCCSSSSTTSCSSSCCCCCSSCCCCCCCTTEEE
T ss_pred             cceeccCCcCCCCCCEeECCCCCeEeECCCCccc
Confidence            3678887665556677888888888888888863

>d3egfa_ g.3.11.1 (A:) Epidermal growth factor, EGF {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Epidermal growth factor, EGF
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.98  E-value=3.8e-06  Score=56.95  Aligned_cols=40  Identities=35%  Similarity=0.910  Sum_probs=30.4

Q ss_pred             ccCCCCcCCCCCCCCeeecCC-CCceeeeCCCCCcCCCCcc
Q psy15407        356 SKCNACYKSPCTNQGVCEPLP-ERQYQCRCTPGYHGQHCEF  395 (604)
Q Consensus       356 ~~c~~C~~~~C~~~g~C~~~~-~~~~~C~C~~g~~G~~c~~  395 (604)
                      ..|++|.++||.|+|+|.... ...|+|.|++||+|.+||.
T Consensus         4 ~~C~~c~~~~C~NgG~C~~~~~~~~~~C~C~~gy~G~~Ce~   44 (53)
T d3egfa_           4 PGCPSSYDGYCLNGGVCMHIESLDSYTCNCVIGYSGDRCQT   44 (53)
T ss_dssp             CCCCTTSSCCSCSSCEEEEESSSSCEEEECCTTCCSSSSCC
T ss_pred             CCCCCCCCCCCCCCcEeeccCCCCCeEeECCCCCcCCCCcc
Confidence            456778888888888887432 2468888888888888874

>d1haea_ g.3.11.1 (A:) Heregulin-alpha, EGF-like domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Heregulin-alpha, EGF-like domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.96  E-value=1.2e-06  Score=62.32  Aligned_cols=38  Identities=32%  Similarity=0.776  Sum_probs=31.7

Q ss_pred             CCCCCCCCCCCCCEEe-----eCCCCeEeeeCCCCccCCCCcC
Q psy15407        514 VDDCVNHMCQNGGTCV-----DGINDYTCKCEGDFVGKFCEIA  551 (604)
Q Consensus       514 ~~~C~~~~C~~~~~C~-----~~~~~y~C~C~~G~~G~~C~~~  551 (604)
                      .++|..++|.++|+|.     +..++|+|.|++||+|.+|+..
T Consensus         6 c~ec~~~~C~NgG~C~~~~~~~~~~~y~C~C~~gy~G~~Ce~~   48 (63)
T d1haea_           6 CAEKEKTFCVNGGECFMVKDLSNPSRYLCKCQPGFTGARCTEN   48 (63)
T ss_dssp             CCHHHHTTSCTTCEEEEEESSSSSCCEEEECCTTEESTTSCEE
T ss_pred             CCCCcCCcCCCCCEEeecccccCCCCEEeECCCCCCCCCcCCC
Confidence            4667778999999994     4567899999999999999864

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.95  E-value=2.7e-07  Score=94.66  Aligned_cols=35  Identities=9%  Similarity=0.163  Sum_probs=22.6

Q ss_pred             CCCcEEeCCCCcceecC-CCcCCCcccCCcCCCCCC
Q psy15407        140 PNLIKLDLRRNQVTGIE-DNAFEGENDQGCLGDNYC  174 (604)
Q Consensus       140 ~~L~~L~Ls~N~i~~i~-~~~f~~l~~L~~L~l~~~  174 (604)
                      ++|++|||+.|+|+... ...+..++++++|+|++|
T Consensus         2 ~~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~   37 (460)
T d1z7xw1           2 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDC   37 (460)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESS
T ss_pred             CCCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCC
Confidence            46899999999998753 223444555555555444

>d1nqlb_ g.3.11.1 (B:) Epidermal growth factor, EGF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Epidermal growth factor, EGF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.89  E-value=1.5e-06  Score=57.72  Aligned_cols=39  Identities=21%  Similarity=0.546  Sum_probs=30.7

Q ss_pred             CCCCCCCCCCCc-eeCCCCCCCeeeecCCCCcCCCCCCCc
Q psy15407        562 SPCQHHDCKNGI-CFQPQGSNDYLCKCAPGYSGKESLLQQ  600 (604)
Q Consensus       562 ~~C~~~~C~~g~-C~~~~g~~~~~C~C~~G~~G~~C~~~~  600 (604)
                      .+|....|.||+ |+.....++|+|.|++||+|++||..+
T Consensus         5 ~~c~~~~C~ngG~C~~~~~~~~~~C~C~~gy~G~~Ce~~d   44 (48)
T d1nqlb_           5 PLSHDGYCLHDGVCMYIEALDKYACNCVVGYIGERCQYRD   44 (48)
T ss_dssp             CSTTCCEECTTCEEEEETTTTEEEEEECTTEESTTSCEEC
T ss_pred             CCCCCCCCCCCcEEeeeCCCCCeEEeCCCCcccCCCCcCc
Confidence            456677788866 986443368999999999999999764

>d1lmja1 g.3.11.1 (A:3-46) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.84  E-value=4.6e-06  Score=53.84  Aligned_cols=21  Identities=33%  Similarity=0.964  Sum_probs=10.9

Q ss_pred             CEEeeCCCCeEeeeCCCCccC
Q psy15407        526 GTCVDGINDYTCKCEGDFVGK  546 (604)
Q Consensus       526 ~~C~~~~~~y~C~C~~G~~G~  546 (604)
                      ++|++++|+|+|.|++||.+.
T Consensus        16 ~~C~Nt~Gsy~C~C~~Gy~~~   36 (44)
T d1lmja1          16 GQCVNTPGDFECKCDEGYESG   36 (44)
T ss_dssp             SCEEEETTEEEECCCSSEEEC
T ss_pred             CEeEcCCCCeEEeCCCCCccC
Confidence            455555555555555555443

>d1lmja1 g.3.11.1 (A:3-46) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.80  E-value=4.5e-06  Score=53.91  Aligned_cols=35  Identities=20%  Similarity=0.628  Sum_probs=31.1

Q ss_pred             cCCCcCCCCCCCCCCCCceeecCCCeEEecCCCCcC
Q psy15407        472 TKTPFCAGEYNPCRNGARCLDHFSHYTCECTPGFSG  507 (604)
Q Consensus       472 ~~~~~C~~~~~~C~~~~~C~~~~~~~~C~C~~g~~g  507 (604)
                      .+++||......|. ++.|+|+.|+|+|.|++||++
T Consensus         1 TDidEC~~~~~~C~-~~~C~Nt~Gsy~C~C~~Gy~~   35 (44)
T d1lmja1           1 TDIDECRISPDLCG-RGQCVNTPGDFECKCDEGYES   35 (44)
T ss_dssp             CCCCTTTTCSSTTT-TSCEEEETTEEEECCCSSEEE
T ss_pred             CcccccCCCCCCCC-CCEeEcCCCCeEEeCCCCCcc
Confidence            47899998888886 479999999999999999975

>d1emoa1 g.3.11.1 (A:2124-2166) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.78  E-value=2.5e-06  Score=55.12  Aligned_cols=32  Identities=22%  Similarity=0.732  Sum_probs=20.9

Q ss_pred             CCCcCCCCCCCCCcEEEeCCCCeEEecCCCCC
Q psy15407        435 NIDDCLSHKCENNATCVDLIQAYECRCAPGFQ  466 (604)
Q Consensus       435 ~~~~C~~~~C~~~~~C~~~~~~~~C~C~~g~~  466 (604)
                      ++|||...++..++.|+|+.|+|.|.|++||.
T Consensus         4 DidEC~~~~~~~~~~C~Nt~Gsy~C~C~~Gy~   35 (43)
T d1emoa1           4 DMDECKEPDVCKHGQCINTDGSYRCECPFGYI   35 (43)
T ss_dssp             CCCSSSSTTSCSSSCCCCCSSCCCCCCCTTEE
T ss_pred             ceeccCCcCCCCCCEeECCCCCeEeECCCCcc
Confidence            66666655555556677777777777777765

>d1uzka1 g.3.11.1 (A:1486-1528) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.72  E-value=5.8e-06  Score=53.49  Aligned_cols=32  Identities=31%  Similarity=0.821  Sum_probs=19.8

Q ss_pred             cCCCCCCCCCCCCCEEeeCCCCeEeeeCCCCc
Q psy15407        513 NVDDCVNHMCQNGGTCVDGINDYTCKCEGDFV  544 (604)
Q Consensus       513 ~~~~C~~~~C~~~~~C~~~~~~y~C~C~~G~~  544 (604)
                      |+|||+..+...++.|++++|+|+|.|++||+
T Consensus         2 DidEC~~~~~~c~~~C~Nt~G~y~C~C~~Gy~   33 (43)
T d1uzka1           2 DVNECLDPTTCISGNCVNTPGSYICDCPPDFE   33 (43)
T ss_dssp             CCCGGGSTTSSBTSEEEEETTEEEEECCTTCE
T ss_pred             CccccCCCCcCcCCEeECCCCCEEEecCCCCE
Confidence            56666543322345777777777777777775

>d1uzka2 g.3.11.1 (A:1605-1647) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.70  E-value=3.7e-06  Score=54.34  Aligned_cols=31  Identities=29%  Similarity=1.111  Sum_probs=19.8

Q ss_pred             cCCCCCC--CCCCCCCEEeeCCCCeEeeeCCCCc
Q psy15407        513 NVDDCVN--HMCQNGGTCVDGINDYTCKCEGDFV  544 (604)
Q Consensus       513 ~~~~C~~--~~C~~~~~C~~~~~~y~C~C~~G~~  544 (604)
                      |+|||..  +.|. ++.|++++|+|+|.|++||+
T Consensus         2 DinEC~~~~~~c~-~~~C~Nt~Gsy~C~C~~Gy~   34 (43)
T d1uzka2           2 DIDECQELPGLCQ-GGKCINTFGSFQCRCPTGYY   34 (43)
T ss_dssp             ECCHHHHCGGGGB-TSEEEECSSCEEEECCTTCC
T ss_pred             CcccccCCCCCcC-CCEEECCCCCeEeECCCCCe
Confidence            5566642  3354 35777777777777777775

>d1lmja2 g.3.11.1 (A:47-88) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.67  E-value=6.3e-06  Score=52.88  Aligned_cols=30  Identities=30%  Similarity=0.943  Sum_probs=17.1

Q ss_pred             CCCCCC--CCCCCCCEEeeCCCCeEeeeCCCCc
Q psy15407        514 VDDCVN--HMCQNGGTCVDGINDYTCKCEGDFV  544 (604)
Q Consensus       514 ~~~C~~--~~C~~~~~C~~~~~~y~C~C~~G~~  544 (604)
                      +|||..  +.|. ++.|++++|+|+|.|++||+
T Consensus         2 idEC~~~~~~C~-~~~C~Nt~Gsy~C~C~~Gy~   33 (42)
T d1lmja2           2 IDECQRDPLLCR-GGVCHNTEGSYRCECPPGHQ   33 (42)
T ss_dssp             CCHHHHCSSTTT-TSEEEEETTEEEEESCTTSC
T ss_pred             ccccCCCCCCCC-CCEeECCCCCeEEeCCCCCe
Confidence            455532  2343 35666666666666666665

>d1lmja2 g.3.11.1 (A:47-88) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.65  E-value=6.9e-06  Score=52.69  Aligned_cols=32  Identities=34%  Similarity=0.803  Sum_probs=19.7

Q ss_pred             CCcCCCCCCCCCCCCceeecCCCeEEecCCCCc
Q psy15407        474 TPFCAGEYNPCRNGARCLDHFSHYTCECTPGFS  506 (604)
Q Consensus       474 ~~~C~~~~~~C~~~~~C~~~~~~~~C~C~~g~~  506 (604)
                      ++||...+..|. ++.|+|++|+|+|.|++||+
T Consensus         2 idEC~~~~~~C~-~~~C~Nt~Gsy~C~C~~Gy~   33 (42)
T d1lmja2           2 IDECQRDPLLCR-GGVCHNTEGSYRCECPPGHQ   33 (42)
T ss_dssp             CCHHHHCSSTTT-TSEEEEETTEEEEESCTTSC
T ss_pred             ccccCCCCCCCC-CCEeECCCCCeEEeCCCCCe
Confidence            455555555564 35677777777777777765

>d1gl4a2 g.3.11.5 (A:359-398) EGF-like domain of nidogen-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-like domain of nidogen-1
domain: EGF-like domain of nidogen-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.60  E-value=1.4e-05  Score=50.35  Aligned_cols=27  Identities=26%  Similarity=0.828  Sum_probs=23.9

Q ss_pred             CCCCCCCEEeeCCCCeEeeeCCCCccC
Q psy15407        520 HMCQNGGTCVDGINDYTCKCEGDFVGK  546 (604)
Q Consensus       520 ~~C~~~~~C~~~~~~y~C~C~~G~~G~  546 (604)
                      +.|..++.|++++|+|+|.|++||+|+
T Consensus         7 ~~C~~~A~C~Nt~Gsy~C~C~~Gy~Gd   33 (40)
T d1gl4a2           7 HQCSVHAECRDYATGFCCRCVANYTGN   33 (40)
T ss_dssp             GGSCTTEEEEECSSCEEEEECTTEEEC
T ss_pred             CCCCCCCEeecCCCCeEeECCCCCcCC
Confidence            468888999999999999999999865

>d1uzka2 g.3.11.1 (A:1605-1647) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.58  E-value=7e-06  Score=52.97  Aligned_cols=33  Identities=24%  Similarity=0.835  Sum_probs=20.1

Q ss_pred             CCCcCCCCCCCCCCCCceeecCCCeEEecCCCCc
Q psy15407        473 KTPFCAGEYNPCRNGARCLDHFSHYTCECTPGFS  506 (604)
Q Consensus       473 ~~~~C~~~~~~C~~~~~C~~~~~~~~C~C~~g~~  506 (604)
                      ++++|...++.|. ++.|++++|+|+|.|++||.
T Consensus         2 DinEC~~~~~~c~-~~~C~Nt~Gsy~C~C~~Gy~   34 (43)
T d1uzka2           2 DIDECQELPGLCQ-GGKCINTFGSFQCRCPTGYY   34 (43)
T ss_dssp             ECCHHHHCGGGGB-TSEEEECSSCEEEECCTTCC
T ss_pred             CcccccCCCCCcC-CCEEECCCCCeEeECCCCCe
Confidence            4555655445554 24677777777777777765

>d1dx5i3 g.3.11.1 (I:423-462) Thrombomodulin, different EGF-like domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Thrombomodulin, different EGF-like domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.54  E-value=1.5e-05  Score=49.95  Aligned_cols=31  Identities=26%  Similarity=0.725  Sum_probs=24.3

Q ss_pred             cCCCCC-CCCCCCCCEEeeCCCCeEeeeCCCCcc
Q psy15407        513 NVDDCV-NHMCQNGGTCVDGINDYTCKCEGDFVG  545 (604)
Q Consensus       513 ~~~~C~-~~~C~~~~~C~~~~~~y~C~C~~G~~G  545 (604)
                      |+|||. .++|+  ..|++++|+|+|.|++||+.
T Consensus         1 DidEC~~~~~C~--~~C~N~~Gsy~C~C~~Gy~l   32 (40)
T d1dx5i3           1 DIDECENGGFCS--GVCHNLPGTFECICGPDSAL   32 (40)
T ss_dssp             ECCHHHHCSSCS--SEEEECSSSEEEEECSSSSC
T ss_pred             CccccCCCcCcc--CEeeCCCCCeEeECCCCCee
Confidence            456675 35675  48999999999999999974

>d1uzka1 g.3.11.1 (A:1486-1528) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.50  E-value=2.7e-05  Score=50.19  Aligned_cols=32  Identities=28%  Similarity=0.818  Sum_probs=21.3

Q ss_pred             CCCcCCCCCCCCCcEEEeCCCCeEEecCCCCC
Q psy15407        435 NIDDCLSHKCENNATCVDLIQAYECRCAPGFQ  466 (604)
Q Consensus       435 ~~~~C~~~~C~~~~~C~~~~~~~~C~C~~g~~  466 (604)
                      +|+||.......++.|+|+.|+|.|.|++||.
T Consensus         2 DidEC~~~~~~c~~~C~Nt~G~y~C~C~~Gy~   33 (43)
T d1uzka1           2 DVNECLDPTTCISGNCVNTPGSYICDCPPDFE   33 (43)
T ss_dssp             CCCGGGSTTSSBTSEEEEETTEEEEECCTTCE
T ss_pred             CccccCCCCcCcCCEeECCCCCEEEecCCCCE
Confidence            56777644333356777777777777777775

>d1apqa_ g.3.11.1 (A:) Complement protease C1R {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Complement protease C1R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.44  E-value=3.9e-05  Score=52.09  Aligned_cols=20  Identities=20%  Similarity=0.640  Sum_probs=16.7

Q ss_pred             CCEEeeCCCCeEeeeCCCCc
Q psy15407        525 GGTCVDGINDYTCKCEGDFV  544 (604)
Q Consensus       525 ~~~C~~~~~~y~C~C~~G~~  544 (604)
                      ...|++++|+|+|.|++||+
T Consensus        23 ~~~C~Nt~GsY~C~C~~Gy~   42 (53)
T d1apqa_          23 QHLCHNYVGGYFCSCRPGYE   42 (53)
T ss_dssp             SSEEEEETTEEEEECSTTCE
T ss_pred             cCEeEcCCCCeEeECCCCCe
Confidence            34788888999999999986

>d1k36a_ g.3.11.1 (A:) Epiregulin, EGF-domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Epiregulin, EGF-domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.40  E-value=3.8e-05  Score=49.82  Aligned_cols=35  Identities=23%  Similarity=0.527  Sum_probs=27.3

Q ss_pred             CCCCCCCCceeCCCCCCCeeeecCCCCcCCCCCCC
Q psy15407        565 QHHDCKNGICFQPQGSNDYLCKCAPGYSGKESLLQ  599 (604)
Q Consensus       565 ~~~~C~~g~C~~~~g~~~~~C~C~~G~~G~~C~~~  599 (604)
                      ....|.||.|......+.+.|.|++||+|++||..
T Consensus        10 ~~~yC~nG~C~~~~~~~~~~C~C~~gY~G~RCe~~   44 (46)
T d1k36a_          10 MNGYCLHGQCIYLVDMSQNYCRCEVGYTGVRCEHF   44 (46)
T ss_dssp             CCSSCSSEEEEEETTTTEEEEEECTTCSSTTSCCC
T ss_pred             CCCcCcCCEEEEeCCCCccEeECCCCceecCceee
Confidence            45678898876433337899999999999999864

>d1apqa_ g.3.11.1 (A:) Complement protease C1R {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Complement protease C1R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.31  E-value=9.8e-05  Score=50.01  Aligned_cols=34  Identities=24%  Similarity=0.596  Sum_probs=24.1

Q ss_pred             CCCcCCCCCCCCCC------CCceeecCCCeEEecCCCCc
Q psy15407        473 KTPFCAGEYNPCRN------GARCLDHFSHYTCECTPGFS  506 (604)
Q Consensus       473 ~~~~C~~~~~~C~~------~~~C~~~~~~~~C~C~~g~~  506 (604)
                      +++||......|..      ...|+|++|+|+|.|++||+
T Consensus         3 DidEC~~~~~~c~~~~~~~c~~~C~Nt~GsY~C~C~~Gy~   42 (53)
T d1apqa_           3 DLDECASRSKSGEEDPQPQCQHLCHNYVGGYFCSCRPGYE   42 (53)
T ss_dssp             SCCTTTCSTTTCCCSSSCTTSSEEEEETTEEEEECSTTCE
T ss_pred             ecccccCCCCCcccCCCCCccCEeEcCCCCeEeECCCCCe
Confidence            45566554444432      24799999999999999997

>d1i0ua2 g.3.11.1 (A:42-82) Low density lipoprotein (LDL) receptor, different EGF domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Low density lipoprotein (LDL) receptor, different EGF domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.29  E-value=5.2e-05  Score=48.17  Aligned_cols=28  Identities=36%  Similarity=0.936  Sum_probs=18.3

Q ss_pred             CCCC-CCCCCCCCEEeeCCCCeEeeeCCCCc
Q psy15407        515 DDCV-NHMCQNGGTCVDGINDYTCKCEGDFV  544 (604)
Q Consensus       515 ~~C~-~~~C~~~~~C~~~~~~y~C~C~~G~~  544 (604)
                      |||. .++|.+  .|+++.|+|+|.|++||+
T Consensus         2 dEC~~~~~C~~--~C~n~~Gsy~C~C~~Gy~   30 (41)
T d1i0ua2           2 DECQDPDTCSQ--LCVNLEGGYKCQCEEGFQ   30 (41)
T ss_dssp             CTTTTTTSCSS--CEECSSSCCEECCCTTEE
T ss_pred             ccCCCCCCCCC--EeECCCCCEEeECCCCCe
Confidence            5554 234543  677777777777777776

>d1gl4a2 g.3.11.5 (A:359-398) EGF-like domain of nidogen-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-like domain of nidogen-1
domain: EGF-like domain of nidogen-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.25  E-value=1.6e-05  Score=49.98  Aligned_cols=28  Identities=25%  Similarity=0.702  Sum_probs=23.5

Q ss_pred             CCCCCCCCceeecCCCeEEecCCCCcCC
Q psy15407        481 YNPCRNGARCLDHFSHYTCECTPGFSGV  508 (604)
Q Consensus       481 ~~~C~~~~~C~~~~~~~~C~C~~g~~g~  508 (604)
                      .+.|..++.|+++.++|.|.|.+||+|.
T Consensus         6 ~~~C~~~A~C~Nt~Gsy~C~C~~Gy~Gd   33 (40)
T d1gl4a2           6 RHQCSVHAECRDYATGFCCRCVANYTGN   33 (40)
T ss_dssp             GGGSCTTEEEEECSSCEEEEECTTEEEC
T ss_pred             CCCCCCCCEeecCCCCeEeECCCCCcCC
Confidence            3577888899999999999999999864

>d1ioxa_ g.3.11.1 (A:) Betacellulin-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Betacellulin-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.24  E-value=9.8e-05  Score=48.84  Aligned_cols=39  Identities=31%  Similarity=0.649  Sum_probs=27.5

Q ss_pred             cCCCCcCCCCCCCCeeecCCCCceeeeCCCCCcCCCCcc
Q psy15407        357 KCNACYKSPCTNQGVCEPLPERQYQCRCTPGYHGQHCEF  395 (604)
Q Consensus       357 ~c~~C~~~~C~~~g~C~~~~~~~~~C~C~~g~~G~~c~~  395 (604)
                      +|.+...+.|.|+|.|.......++|.|+.||+|.+|+.
T Consensus         7 pC~~~~~~yC~nGgcc~~~~~~~~~C~C~~gy~G~rCe~   45 (50)
T d1ioxa_           7 RCPKQYKHYCIKGRCRFVVAEQTPSCVCDEGYIGARCER   45 (50)
T ss_dssp             ECCGGGTTSCTTCCEEEETTTTEEEECCCTTEETTTTCE
T ss_pred             ccCcccCCCccCCeEEEeCCCCCcEeECCCCCeeCCCcc
Confidence            455556667777777765555667788888888877763

>d1k36a_ g.3.11.1 (A:) Epiregulin, EGF-domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Epiregulin, EGF-domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.23  E-value=0.0001  Score=47.78  Aligned_cols=40  Identities=35%  Similarity=0.808  Sum_probs=28.3

Q ss_pred             cccCCCCcCCCCCCCCeeec-CCCCceeeeCCCCCcCCCCcc
Q psy15407        355 LSKCNACYKSPCTNQGVCEP-LPERQYQCRCTPGYHGQHCEF  395 (604)
Q Consensus       355 ~~~c~~C~~~~C~~~g~C~~-~~~~~~~C~C~~g~~G~~c~~  395 (604)
                      .++|.++..++|.| |.|.. .....+.|.|+.||+|.+|+.
T Consensus         3 i~~C~~~~~~yC~n-G~C~~~~~~~~~~C~C~~gY~G~RCe~   43 (46)
T d1k36a_           3 ITKCSSDMNGYCLH-GQCIYLVDMSQNYCRCEVGYTGVRCEH   43 (46)
T ss_dssp             EECCCTTCCSSCSS-EEEEEETTTTEEEEEECTTCSSTTSCC
T ss_pred             eeeCCCcCCCcCcC-CEEEEeCCCCccEeECCCCceecCcee
Confidence            34677777788887 55653 333568888888888888873

>d1szba2 g.3.11.1 (A:124-168) Mannose-binding protein associated serine protease 2, MASP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Mannose-binding protein associated serine protease 2, MASP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.13  E-value=0.00011  Score=47.70  Aligned_cols=20  Identities=20%  Similarity=0.796  Sum_probs=16.0

Q ss_pred             CCEEeeCCCCeEeeeCCCCc
Q psy15407        525 GGTCVDGINDYTCKCEGDFV  544 (604)
Q Consensus       525 ~~~C~~~~~~y~C~C~~G~~  544 (604)
                      ...|++++|+|+|.|++||.
T Consensus        15 ~~~C~Nt~Gsy~C~C~~Gy~   34 (45)
T d1szba2          15 DHHCHNHLGGFYCSCRAGYV   34 (45)
T ss_dssp             SSEEEEETTEEEEECCTTEE
T ss_pred             CCCCccCCCCeEEECCCCCe
Confidence            34788888888888888886

>d1nt0a3 g.3.11.1 (A:120-164) Mannose-binding protein associated serine protease 2, MASP2 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Mannose-binding protein associated serine protease 2, MASP2
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.13  E-value=9.2e-05  Score=48.12  Aligned_cols=20  Identities=20%  Similarity=0.703  Sum_probs=17.0

Q ss_pred             CCEEeeCCCCeEeeeCCCCc
Q psy15407        525 GGTCVDGINDYTCKCEGDFV  544 (604)
Q Consensus       525 ~~~C~~~~~~y~C~C~~G~~  544 (604)
                      ...|++++|+|+|.|++||+
T Consensus        15 ~~~C~Nt~gsy~C~C~~Gy~   34 (45)
T d1nt0a3          15 DHYCHNYLGGYYCSCRVGYI   34 (45)
T ss_dssp             SSEEEEETTEEEEECCTTEE
T ss_pred             CCEeecCCCCEEEeCCCCCE
Confidence            34899999999999999996

>d1moxc_ g.3.11.1 (C:) Transforming growth factor alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Transforming growth factor alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.94  E-value=0.00021  Score=46.89  Aligned_cols=38  Identities=26%  Similarity=0.561  Sum_probs=25.1

Q ss_pred             cCCCCcCCCCCCCCeeecCCCCceeeeCCCCCcCCCCc
Q psy15407        357 KCNACYKSPCTNQGVCEPLPERQYQCRCTPGYHGQHCE  394 (604)
Q Consensus       357 ~c~~C~~~~C~~~g~C~~~~~~~~~C~C~~g~~G~~c~  394 (604)
                      +|.+...+.|.|+|.|.......++|.|+.||+|.+||
T Consensus         6 pC~~~~~~yClnGgcc~~~~~~~~~C~C~~gy~G~RCe   43 (49)
T d1moxc_           6 DCPDSHTQFCFHGTCRFLVQEDKPACVCHSGYVGARCE   43 (49)
T ss_dssp             CCCCCSSCSSTTEEEEEETTTTEEEEEECTTEESTTSC
T ss_pred             ccCcccCCEeeCCeEEecCCCCCcEeECCCCCEecCCc
Confidence            44444556677777665555556777777777777776

>d1dx5i3 g.3.11.1 (I:423-462) Thrombomodulin, different EGF-like domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Thrombomodulin, different EGF-like domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.91  E-value=0.00016  Score=45.15  Aligned_cols=19  Identities=32%  Similarity=0.836  Sum_probs=11.1

Q ss_pred             cEEEeCCCCeEEecCCCCC
Q psy15407        448 ATCVDLIQAYECRCAPGFQ  466 (604)
Q Consensus       448 ~~C~~~~~~~~C~C~~g~~  466 (604)
                      ..|+|+.|+|+|.|++||+
T Consensus        13 ~~C~N~~Gsy~C~C~~Gy~   31 (40)
T d1dx5i3          13 GVCHNLPGTFECICGPDSA   31 (40)
T ss_dssp             SEEEECSSSEEEEECSSSS
T ss_pred             CEeeCCCCCeEeECCCCCe
Confidence            3556666666666666655

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=96.89  E-value=9.4e-05  Score=64.15  Aligned_cols=83  Identities=13%  Similarity=-0.003  Sum_probs=40.6

Q ss_pred             cceeecCCCCceeeccCC----CCCCCCCCCeEEecCCcceeee----ccccCCCCcccEEEccCCccccCCcc------
Q psy15407        217 STMYRDLSNNQIGFLSNF----TFSPLSKLSQLILSYNKLQCID----RDALAGLKSLRIISLHGNDISMIPEG------  282 (604)
Q Consensus       217 ~L~~L~Ls~N~i~~l~~~----~f~~l~~L~~L~Ls~N~l~~i~----~~~f~~l~~L~~L~Ls~N~l~~i~~~------  282 (604)
                      .|+.|+|++|.|..-...    .+...+.|++|+|++|.|..-.    ..++...++|++|+|++|.+..+...      
T Consensus        45 ~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~  124 (167)
T d1pgva_          45 HIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMM  124 (167)
T ss_dssp             CCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHH
T ss_pred             ccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcCCCccHHHHHHHH
Confidence            455555555555432111    2223455666666666655421    12344455666666666665544321      


Q ss_pred             -cccCcccceeeeccCCC
Q psy15407        283 -AFADLHAITHLAIGGNP  299 (604)
Q Consensus       283 -~f~~l~~L~~L~L~~Np  299 (604)
                       ++..-++|+.|+|+.+.
T Consensus       125 ~~L~~n~sL~~l~l~~~~  142 (167)
T d1pgva_         125 MAIEENESLLRVGISFAS  142 (167)
T ss_dssp             HHHHHCSSCCEEECCCCC
T ss_pred             HHHHhCCCccEeeCcCCC
Confidence             12233456666665543

>d1nzia2 g.3.11.1 (A:118-159) Complement C1S component {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Complement C1S component
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.80  E-value=0.0004  Score=44.01  Aligned_cols=23  Identities=26%  Similarity=0.748  Sum_probs=18.0

Q ss_pred             CCCCCCCEEeeCCCCeEeeeCCCCc
Q psy15407        520 HMCQNGGTCVDGINDYTCKCEGDFV  544 (604)
Q Consensus       520 ~~C~~~~~C~~~~~~y~C~C~~G~~  544 (604)
                      ++|++  .|++++|+|+|.|++||.
T Consensus         9 ~~C~~--~C~n~~Gsy~C~C~~Gy~   31 (42)
T d1nzia2           9 VPCSH--FCNNFIGGYFCSCPPEYF   31 (42)
T ss_dssp             CCSSS--EEEEETTEEEEECCTTCE
T ss_pred             cCCCC--EeecCCCCEEEeCCCCCE
Confidence            35664  788888888888888886

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=96.76  E-value=7.3e-05  Score=64.89  Aligned_cols=60  Identities=8%  Similarity=-0.038  Sum_probs=44.4

Q ss_pred             cceeecCCCCceeecc----CCCCCCCCCCCeEEecCCcceeee-------ccccCCCCcccEEEccCCcc
Q psy15407        217 STMYRDLSNNQIGFLS----NFTFSPLSKLSQLILSYNKLQCID-------RDALAGLKSLRIISLHGNDI  276 (604)
Q Consensus       217 ~L~~L~Ls~N~i~~l~----~~~f~~l~~L~~L~Ls~N~l~~i~-------~~~f~~l~~L~~L~Ls~N~l  276 (604)
                      .|+.|+|++|.|+.-.    ..++..-+.|++|+|++|++..+.       ..++..-++|+.|+|+.+..
T Consensus        73 ~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~~~  143 (167)
T d1pgva_          73 SLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM  143 (167)
T ss_dssp             SCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred             cccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCCCc
Confidence            7889999999987632    224666788999999999877653       23344568899999987754

>d1nt0a3 g.3.11.1 (A:120-164) Mannose-binding protein associated serine protease 2, MASP2 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Mannose-binding protein associated serine protease 2, MASP2
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.75  E-value=0.00032  Score=45.44  Aligned_cols=20  Identities=25%  Similarity=0.752  Sum_probs=16.6

Q ss_pred             CCceeecCCCeEEecCCCCc
Q psy15407        487 GARCLDHFSHYTCECTPGFS  506 (604)
Q Consensus       487 ~~~C~~~~~~~~C~C~~g~~  506 (604)
                      ...|+++.++|+|.|++||+
T Consensus        15 ~~~C~Nt~gsy~C~C~~Gy~   34 (45)
T d1nt0a3          15 DHYCHNYLGGYYCSCRVGYI   34 (45)
T ss_dssp             SSEEEEETTEEEEECCTTEE
T ss_pred             CCEeecCCCCEEEeCCCCCE
Confidence            35788888889999999886

>d1szba2 g.3.11.1 (A:124-168) Mannose-binding protein associated serine protease 2, MASP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Mannose-binding protein associated serine protease 2, MASP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.64  E-value=0.00066  Score=43.91  Aligned_cols=32  Identities=19%  Similarity=0.569  Sum_probs=21.1

Q ss_pred             CcCCCCCCCC-CCCCceeecCCCeEEecCCCCc
Q psy15407        475 PFCAGEYNPC-RNGARCLDHFSHYTCECTPGFS  506 (604)
Q Consensus       475 ~~C~~~~~~C-~~~~~C~~~~~~~~C~C~~g~~  506 (604)
                      +||......+ .-...|+++.|+|+|.|++||.
T Consensus         2 dEC~~~~~~~~~C~~~C~Nt~Gsy~C~C~~Gy~   34 (45)
T d1szba2           2 DECQVAPGEAPTCDHHCHNHLGGFYCSCRAGYV   34 (45)
T ss_dssp             CTTCCCTTSCCSSSSEEEEETTEEEEECCTTEE
T ss_pred             cCCcCCCCCCCCCCCCCccCCCCeEEECCCCCe
Confidence            4555433322 2235788888888899988886

>d1ioxa_ g.3.11.1 (A:) Betacellulin-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Betacellulin-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.60  E-value=0.00077  Score=44.39  Aligned_cols=33  Identities=33%  Similarity=0.721  Sum_probs=25.0

Q ss_pred             CCCCCCCCCeeeeCCCCceEeeCCCCCcCCCCC
Q psy15407        401 YGNPCRNSGTCKLLEEGRFNCECAPGYTGDRCE  433 (604)
Q Consensus       401 ~~~~C~~~~~C~~~~~~~~~C~C~~g~~g~~C~  433 (604)
                      ..+.|.+++.|.....+.+.|.|+.||+|.+||
T Consensus        12 ~~~yC~nGgcc~~~~~~~~~C~C~~gy~G~rCe   44 (50)
T d1ioxa_          12 YKHYCIKGRCRFVVAEQTPSCVCDEGYIGARCE   44 (50)
T ss_dssp             GTTSCTTCCEEEETTTTEEEECCCTTEETTTTC
T ss_pred             cCCCccCCeEEEeCCCCCcEeECCCCCeeCCCc
Confidence            446678878776666677888888888888887

>d3bpse1 g.3.11.1 (E:293-332) Low density lipoprotein (LDL) receptor, different EGF domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Low density lipoprotein (LDL) receptor, different EGF domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.56  E-value=0.00046  Score=43.26  Aligned_cols=22  Identities=32%  Similarity=0.727  Sum_probs=14.7

Q ss_pred             CCCCCCEEeeCCCCeEeeeCCCCc
Q psy15407        521 MCQNGGTCVDGINDYTCKCEGDFV  544 (604)
Q Consensus       521 ~C~~~~~C~~~~~~y~C~C~~G~~  544 (604)
                      .|++  .|++++++|+|.|++||+
T Consensus        11 gC~h--~C~n~~g~~~C~C~~Gy~   32 (40)
T d3bpse1          11 GCSH--VCNDLKIGYECLCPDGFQ   32 (40)
T ss_dssp             GCSS--EEEECSSSEEEECCTTCC
T ss_pred             CCcC--EEEcCCCCEEEECCCCCE
Confidence            3543  677777777777777775

>d1emoa2 g.3.11.1 (A:2167-2205) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.49  E-value=0.00071  Score=39.64  Aligned_cols=25  Identities=28%  Similarity=0.824  Sum_probs=22.8

Q ss_pred             CCCCCCCceeCCCCCCCeeeecCCCCc
Q psy15407        566 HHDCKNGICFQPQGSNDYLCKCAPGYS  592 (604)
Q Consensus       566 ~~~C~~g~C~~~~g~~~~~C~C~~G~~  592 (604)
                      .++|.||.|.+..  |+|.|.|..||.
T Consensus         7 gnpCGnGTCtNvi--GgFec~C~~GFe   31 (39)
T d1emoa2           7 GNPCGNGTCKNVI--GGFECTCEEGFE   31 (39)
T ss_dssp             TCSSSSSCEEECS--SSEEECCSSSSC
T ss_pred             CCccCCceeeecc--cceEEeecCCcC
Confidence            5779999999999  889999999996

>d1xdtr_ g.3.11.1 (R:) Heparin-binding epidermal growth factor, HBEGF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Heparin-binding epidermal growth factor, HBEGF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.47  E-value=0.00046  Score=43.14  Aligned_cols=32  Identities=28%  Similarity=0.546  Sum_probs=26.1

Q ss_pred             CCCCCCceeCCCCCCCeeeecCCCCcCCCCCC
Q psy15407        567 HDCKNGICFQPQGSNDYLCKCAPGYSGKESLL  598 (604)
Q Consensus       567 ~~C~~g~C~~~~g~~~~~C~C~~G~~G~~C~~  598 (604)
                      .-|.||.|.-......+.|.|..||+|.+|+.
T Consensus         8 ~yCihG~C~~i~~l~~~~C~C~~gY~G~RCq~   39 (41)
T d1xdtr_           8 DFCIHGECKYVKELRAPSCICHPGYHGERCHG   39 (41)
T ss_dssp             TCCSSEEECCBGGGTBCCEEECTTEESTTCCE
T ss_pred             CEeECcEEeecCcCCCceeECCCCCeecCccc
Confidence            45888889765555778999999999999974

>d1emoa2 g.3.11.1 (A:2167-2205) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.47  E-value=0.00081  Score=39.38  Aligned_cols=29  Identities=41%  Similarity=1.031  Sum_probs=23.9

Q ss_pred             CCCC-CCCCCCCCEEeeCCCCeEeeeCCCCc
Q psy15407        515 DDCV-NHMCQNGGTCVDGINDYTCKCEGDFV  544 (604)
Q Consensus       515 ~~C~-~~~C~~~~~C~~~~~~y~C~C~~G~~  544 (604)
                      |+|. .+||.+ |+|.+..|+|.|.|.+||.
T Consensus         2 dECsignpCGn-GTCtNviGgFec~C~~GFe   31 (39)
T d1emoa2           2 DECSVGNPCGN-GTCKNVIGGFECTCEEGFE   31 (39)
T ss_dssp             CGGGTTCSSSS-SCEEECSSSEEECCSSSSC
T ss_pred             CccccCCccCC-ceeeecccceEEeecCCcC
Confidence            4553 468876 7999999999999999996

>d1i0ua2 g.3.11.1 (A:42-82) Low density lipoprotein (LDL) receptor, different EGF domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Low density lipoprotein (LDL) receptor, different EGF domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.36  E-value=0.00084  Score=42.36  Aligned_cols=18  Identities=50%  Similarity=1.219  Sum_probs=11.0

Q ss_pred             EEEeCCCCeEEecCCCCC
Q psy15407        449 TCVDLIQAYECRCAPGFQ  466 (604)
Q Consensus       449 ~C~~~~~~~~C~C~~g~~  466 (604)
                      .|+++.|+|+|.|++||.
T Consensus        13 ~C~n~~Gsy~C~C~~Gy~   30 (41)
T d1i0ua2          13 LCVNLEGGYKCQCEEGFQ   30 (41)
T ss_dssp             CEECSSSCCEECCCTTEE
T ss_pred             EeECCCCCEEeECCCCCe
Confidence            566666666666666664

>d1moxc_ g.3.11.1 (C:) Transforming growth factor alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Transforming growth factor alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.30  E-value=0.0014  Score=42.91  Aligned_cols=32  Identities=34%  Similarity=0.725  Sum_probs=24.3

Q ss_pred             CCCCCCCCeeeeCCCCceEeeCCCCCcCCCCC
Q psy15407        402 GNPCRNSGTCKLLEEGRFNCECAPGYTGDRCE  433 (604)
Q Consensus       402 ~~~C~~~~~C~~~~~~~~~C~C~~g~~g~~C~  433 (604)
                      .+.|.+++.|.....+.+.|.|+.||.|.+||
T Consensus        12 ~~yClnGgcc~~~~~~~~~C~C~~gy~G~RCe   43 (49)
T d1moxc_          12 TQFCFHGTCRFLVQEDKPACVCHSGYVGARCE   43 (49)
T ss_dssp             SCSSTTEEEEEETTTTEEEEEECTTEESTTSC
T ss_pred             CCEeeCCeEEecCCCCCcEeECCCCCEecCCc
Confidence            45577777776666677888888888888887

>d2i9aa1 g.3.11.1 (A:10-49) Plasminogen activator (urokinase-type) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Plasminogen activator (urokinase-type)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.08  E-value=0.0029  Score=37.34  Aligned_cols=31  Identities=48%  Similarity=0.945  Sum_probs=24.2

Q ss_pred             CCCCCCEEeeC---CCCeEeeeCCCCccCCCCcC
Q psy15407        521 MCQNGGTCVDG---INDYTCKCEGDFVGKFCEIA  551 (604)
Q Consensus       521 ~C~~~~~C~~~---~~~y~C~C~~G~~G~~C~~~  551 (604)
                      .|.++|+|+..   .+=.+|.||.+|.|.+||.+
T Consensus         3 ~ClNGG~Cvsyk~FS~I~rC~CPk~f~G~HCEiD   36 (40)
T d2i9aa1           3 DCLNGGTCVSNKYFSNIHWCNCPKKFGGQHCEID   36 (40)
T ss_dssp             CCCTTCEEEECSSSTTCEEEECCTTEESTTSCEE
T ss_pred             ccccCCEEEEEehhcCCEEecCCcccCceeEEec
Confidence            47888999752   34458999999999999974

>d1nzia2 g.3.11.1 (A:118-159) Complement C1S component {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Complement C1S component
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.07  E-value=0.0023  Score=40.40  Aligned_cols=23  Identities=30%  Similarity=0.888  Sum_probs=17.5

Q ss_pred             CCCCCCCceeecCCCeEEecCCCCc
Q psy15407        482 NPCRNGARCLDHFSHYTCECTPGFS  506 (604)
Q Consensus       482 ~~C~~~~~C~~~~~~~~C~C~~g~~  506 (604)
                      +.|.  ..|++++++|+|.|++||.
T Consensus         9 ~~C~--~~C~n~~Gsy~C~C~~Gy~   31 (42)
T d1nzia2           9 VPCS--HFCNNFIGGYFCSCPPEYF   31 (42)
T ss_dssp             CCSS--SEEEEETTEEEEECCTTCE
T ss_pred             cCCC--CEeecCCCCEEEeCCCCCE
Confidence            4565  3688888888888888886

>d3bpse1 g.3.11.1 (E:293-332) Low density lipoprotein (LDL) receptor, different EGF domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Low density lipoprotein (LDL) receptor, different EGF domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.90  E-value=0.0018  Score=40.42  Aligned_cols=30  Identities=30%  Similarity=0.670  Sum_probs=23.6

Q ss_pred             CcCCCCCCCCCCCCceeecCCCeEEecCCCCc
Q psy15407        475 PFCAGEYNPCRNGARCLDHFSHYTCECTPGFS  506 (604)
Q Consensus       475 ~~C~~~~~~C~~~~~C~~~~~~~~C~C~~g~~  506 (604)
                      ++|....+.|++  .|++++++|+|.|++||.
T Consensus         3 neC~~~nggC~h--~C~n~~g~~~C~C~~Gy~   32 (40)
T d3bpse1           3 NECLDNNGGCSH--VCNDLKIGYECLCPDGFQ   32 (40)
T ss_dssp             CGGGTGGGGCSS--EEEECSSSEEEECCTTCC
T ss_pred             ccCCCCCCCCcC--EEEcCCCCEEEECCCCCE
Confidence            566666667763  799999999999999986

>d2i9aa1 g.3.11.1 (A:10-49) Plasminogen activator (urokinase-type) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Plasminogen activator (urokinase-type)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.71  E-value=0.0054  Score=36.16  Aligned_cols=14  Identities=36%  Similarity=1.097  Sum_probs=6.6

Q ss_pred             EeeCCCCCcCCCCC
Q psy15407        420 NCECAPGYTGDRCE  433 (604)
Q Consensus       420 ~C~C~~g~~g~~C~  433 (604)
                      +|.||.+|.|..||
T Consensus        21 rC~CPk~f~G~HCE   34 (40)
T d2i9aa1          21 WCNCPKKFGGQHCE   34 (40)
T ss_dssp             EEECCTTEESTTSC
T ss_pred             EecCCcccCceeEE
Confidence            44444444444444

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=95.12  E-value=0.00075  Score=58.07  Aligned_cols=63  Identities=11%  Similarity=0.034  Sum_probs=28.5

Q ss_pred             CCCCCCeEEecCCcceeee----ccccCCCCcccEEEc--cCCccccCC----cccccCcccceeeeccCCCc
Q psy15407        238 PLSKLSQLILSYNKLQCID----RDALAGLKSLRIISL--HGNDISMIP----EGAFADLHAITHLAIGGNPL  300 (604)
Q Consensus       238 ~l~~L~~L~Ls~N~l~~i~----~~~f~~l~~L~~L~L--s~N~l~~i~----~~~f~~l~~L~~L~L~~Npl  300 (604)
                      ..+.|+.|++++|.+..-.    ..++...++|+.++|  ++|.|..--    ..++...+.|++|+|..+..
T Consensus        72 ~~~~l~~l~l~~~~~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~~  144 (166)
T d1io0a_          72 VNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ  144 (166)
T ss_dssp             HCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred             hcccchhhhhccccccchhHHHHHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCCC
Confidence            3445555566555543211    123444455554333  344443211    11233445566666655543

>d1jv2b5 g.3.11.6 (B:563-605) Integrin beta EGF-like domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: Integrin beta EGF-like domains
domain: Integrin beta EGF-like domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.54  E-value=0.015  Score=36.29  Aligned_cols=27  Identities=33%  Similarity=0.823  Sum_probs=22.5

Q ss_pred             CCCCCCEEeeCCCCeEeeeC-CCCccCCCCcC
Q psy15407        521 MCQNGGTCVDGINDYTCKCE-GDFVGKFCEIA  551 (604)
Q Consensus       521 ~C~~~~~C~~~~~~y~C~C~-~G~~G~~C~~~  551 (604)
                      .|+.+|+|+-+    +|+|. +||.|.+||..
T Consensus        12 iCng~G~C~cG----~C~C~~~gy~G~~Ce~C   39 (43)
T d1jv2b5          12 LCSGRGKCECG----SCVCIQPGSYGDTCEKC   39 (43)
T ss_dssp             GGGGTEEEETT----EEEECCSSCBSTTSCBC
T ss_pred             EECCCCEEECC----EeEeCCCCccCCccccC
Confidence            48888999875    79995 79999999864

>d1kloa1 g.3.11.2 (A:11-65) Laminin gamma1 chain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: Laminin-type module
domain: Laminin gamma1 chain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.28  E-value=0.013  Score=39.44  Aligned_cols=48  Identities=27%  Similarity=0.788  Sum_probs=33.2

Q ss_pred             CCCCCCeeecC-CCCceee-eCCCCCcCCCCcccCCCCCCCCCCCCCeee
Q psy15407        365 PCTNQGVCEPL-PERQYQC-RCTPGYHGQHCEFMIDACYGNPCRNSGTCK  412 (604)
Q Consensus       365 ~C~~~g~C~~~-~~~~~~C-~C~~g~~G~~c~~~~~~C~~~~C~~~~~C~  412 (604)
                      ||.++++|... ..+...| .|..||+|..|+.-.+..+++|...++.|.
T Consensus         2 pC~~~~~c~~~~~~~~~vC~~C~~~~~G~~Ce~C~~g~yg~P~~~~g~C~   51 (55)
T d1kloa1           2 PCPGGSSCAIVPKTKEVVCTHCPTGTAGKRCELCDDGYFGDPLGSNGPVR   51 (55)
T ss_dssp             CSCTTCCEEECSSSCCEEECSCCTTEESTTSCEECTTEEEETTCTTSSCE
T ss_pred             cCcCCCccceeCCCCCEEcCCCCCCCccCcccccCCccccCcccCCCcCc
Confidence            46666766533 2345677 599999999998777777777776666553

>d1l3ya_ g.3.11.6 (A:) Integrin beta EGF-like domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: Integrin beta EGF-like domains
domain: Integrin beta EGF-like domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.09  E-value=0.0073  Score=37.50  Aligned_cols=24  Identities=33%  Similarity=0.901  Sum_probs=18.2

Q ss_pred             CCCCCEEeeCCCCeEeeeCCCCccCCCC
Q psy15407        522 CQNGGTCVDGINDYTCKCEGDFVGKFCE  549 (604)
Q Consensus       522 C~~~~~C~~~~~~y~C~C~~G~~G~~C~  549 (604)
                      |..+|+|+..    +|.|.+||+|..|+
T Consensus        17 g~~hG~C~~G----~C~C~~Gw~G~~Ce   40 (41)
T d1l3ya_          17 GPGRGLCFCG----KCRCHPGFEGSACQ   40 (41)
T ss_dssp             HHHHEEEETT----EEEECTTCCTTTTC
T ss_pred             CCCCCeEECC----EEEcCCCCcccCcc
Confidence            3346788765    78899999888886

>d1xdtr_ g.3.11.1 (R:) Heparin-binding epidermal growth factor, HBEGF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Heparin-binding epidermal growth factor, HBEGF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.62  E-value=0.015  Score=36.05  Aligned_cols=28  Identities=25%  Similarity=0.821  Sum_probs=20.1

Q ss_pred             CCCCCCEEe--eCCCCeEeeeCCCCccCCCC
Q psy15407        521 MCQNGGTCV--DGINDYTCKCEGDFVGKFCE  549 (604)
Q Consensus       521 ~C~~~~~C~--~~~~~y~C~C~~G~~G~~C~  549 (604)
                      -|-+ |+|.  .....+.|.|..||+|.+|+
T Consensus         9 yCih-G~C~~i~~l~~~~C~C~~gY~G~RCq   38 (41)
T d1xdtr_           9 FCIH-GECKYVKELRAPSCICHPGYHGERCH   38 (41)
T ss_dssp             CCSS-EEECCBGGGTBCCEEECTTEESTTCC
T ss_pred             EeEC-cEEeecCcCCCceeECCCCCeecCcc
Confidence            4665 7883  34456778888888888886

>d1autl2 g.3.11.1 (L:97-146) Activated protein c (autoprothrombin IIa) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Activated protein c (autoprothrombin IIa)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.85  E-value=0.028  Score=36.75  Aligned_cols=27  Identities=19%  Similarity=0.576  Sum_probs=20.3

Q ss_pred             CCCCCCEEeeCCCCeEeeeCCCCc----cCCCC
Q psy15407        521 MCQNGGTCVDGINDYTCKCEGDFV----GKFCE  549 (604)
Q Consensus       521 ~C~~~~~C~~~~~~y~C~C~~G~~----G~~C~  549 (604)
                      -|++  .|++++++|+|.|++||+    |.+|+
T Consensus         8 gC~~--~C~~~~g~~~C~C~~Gy~L~~D~~tC~   38 (50)
T d1autl2           8 GCTH--YCLEEVGWRRCSCAPGYKLGDDLLQCH   38 (50)
T ss_dssp             GCSS--EEEECSSSEEEECCTTEEECTTSSCEE
T ss_pred             Cccc--EeecCCCCeEEECCCCCEECCCCCccc
Confidence            3554  788888999999999986    55554

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=92.29  E-value=0.0098  Score=50.67  Aligned_cols=86  Identities=15%  Similarity=0.075  Sum_probs=58.8

Q ss_pred             ccceeecCCC-Cceeecc----CCCCCCCCCCCeEEecCCcceeee----ccccCCCCcccEEEccCCccccCCc----c
Q psy15407        216 VSTMYRDLSN-NQIGFLS----NFTFSPLSKLSQLILSYNKLQCID----RDALAGLKSLRIISLHGNDISMIPE----G  282 (604)
Q Consensus       216 ~~L~~L~Ls~-N~i~~l~----~~~f~~l~~L~~L~Ls~N~l~~i~----~~~f~~l~~L~~L~Ls~N~l~~i~~----~  282 (604)
                      ++|++|+|++ +.|+.-.    ..++...++|++|+|++|.|....    ..++...++|+.|++++|.+..-..    .
T Consensus        17 ~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~~   96 (166)
T d1io0a_          17 PDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVE   96 (166)
T ss_dssp             TTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHH
T ss_pred             CCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHHHH
Confidence            3899999997 5565422    234567889999999999986532    2345667899999999999873211    2


Q ss_pred             cccCcccceeeec--cCCCcc
Q psy15407        283 AFADLHAITHLAI--GGNPLY  301 (604)
Q Consensus       283 ~f~~l~~L~~L~L--~~Npl~  301 (604)
                      .+...++|+.++|  .+|++.
T Consensus        97 ~l~~~~~L~~l~L~l~~n~i~  117 (166)
T d1io0a_          97 ALQSNTSLIELRIDNQSQPLG  117 (166)
T ss_dssp             GGGGCSSCCEEECCCCSSCCC
T ss_pred             HHHhCccccEEeeccCCCcCc
Confidence            3555677776544  566664

>d1autl2 g.3.11.1 (L:97-146) Activated protein c (autoprothrombin IIa) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Activated protein c (autoprothrombin IIa)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.04  E-value=0.054  Score=35.31  Aligned_cols=23  Identities=30%  Similarity=0.970  Sum_probs=17.1

Q ss_pred             CCCCCCCceeecCCCeEEecCCCCc
Q psy15407        482 NPCRNGARCLDHFSHYTCECTPGFS  506 (604)
Q Consensus       482 ~~C~~~~~C~~~~~~~~C~C~~g~~  506 (604)
                      +.|.  ..|+++.++|+|.|++||+
T Consensus         7 GgC~--~~C~~~~g~~~C~C~~Gy~   29 (50)
T d1autl2           7 GGCT--HYCLEEVGWRRCSCAPGYK   29 (50)
T ss_dssp             GGCS--SEEEECSSSEEEECCTTEE
T ss_pred             CCcc--cEeecCCCCeEEECCCCCE
Confidence            3454  3588888888888888886

>d1jv2b4 g.3.11.6 (B:532-562) Integrin beta EGF-like domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: Integrin beta EGF-like domains
domain: Integrin beta EGF-like domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.52  E-value=0.037  Score=30.98  Aligned_cols=13  Identities=23%  Similarity=0.657  Sum_probs=12.3

Q ss_pred             eecCCCCcCCCCC
Q psy15407        585 CKCAPGYSGKESL  597 (604)
Q Consensus       585 C~C~~G~~G~~C~  597 (604)
                      |.|.+||+|++|.
T Consensus        16 C~C~~gw~G~~CN   28 (31)
T d1jv2b4          16 CLCDSDWTGYYCN   28 (31)
T ss_dssp             TCCCTTEESSSSC
T ss_pred             eEccCCccccccc
Confidence            9999999999996

>d1l3ya_ g.3.11.6 (A:) Integrin beta EGF-like domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: Integrin beta EGF-like domains
domain: Integrin beta EGF-like domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.47  E-value=0.023  Score=35.15  Aligned_cols=21  Identities=38%  Similarity=1.137  Sum_probs=17.3

Q ss_pred             CCceeCCCCCCCeeeecCCCCcCCCCC
Q psy15407        571 NGICFQPQGSNDYLCKCAPGYSGKESL  597 (604)
Q Consensus       571 ~g~C~~~~g~~~~~C~C~~G~~G~~C~  597 (604)
                      +|.|+..      +|.|.+||+|+.||
T Consensus        20 hG~C~~G------~C~C~~Gw~G~~Ce   40 (41)
T d1l3ya_          20 RGLCFCG------KCRCHPGFEGSACQ   40 (41)
T ss_dssp             HEEEETT------EEEECTTCCTTTTC
T ss_pred             CCeEECC------EEEcCCCCcccCcc
Confidence            4668753      49999999999997

>d1kigl_ g.3.11.1 (L:) Factor X, N-terminal module {Cow (Bos taurus) [TaxId: 9913]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor X, N-terminal module
species: Cow (Bos taurus) [TaxId: 9913]

Probab=91.42  E-value=0.041  Score=36.10  Aligned_cols=23  Identities=26%  Similarity=0.745  Sum_probs=17.4

Q ss_pred             CCCCCCCceeecCCCeEEecCCCCc
Q psy15407        482 NPCRNGARCLDHFSHYTCECTPGFS  506 (604)
Q Consensus       482 ~~C~~~~~C~~~~~~~~C~C~~g~~  506 (604)
                      +.|..  .|+++.++|+|.|++||+
T Consensus         6 GgC~h--~C~~~~~~~~C~C~~Gy~   28 (51)
T d1kigl_           6 GGCDQ--FCREERSEVRCSCAHGYV   28 (51)
T ss_dssp             TSSSS--CCCEETTEECCCCCTTEE
T ss_pred             CCccc--EeEcCCCcEEeEcCCCCE
Confidence            45553  488888888899998886

>d2p3ua1 g.3.11.1 (A:87-137) Factor X, N-terminal module {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor X, N-terminal module
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.38  E-value=0.036  Score=36.38  Aligned_cols=26  Identities=31%  Similarity=0.861  Sum_probs=19.7

Q ss_pred             CCCCCEEeeCCCCeEeeeCCCCc----cCCCC
Q psy15407        522 CQNGGTCVDGINDYTCKCEGDFV----GKFCE  549 (604)
Q Consensus       522 C~~~~~C~~~~~~y~C~C~~G~~----G~~C~  549 (604)
                      |++  .|++++++|+|.|++||.    |.+|+
T Consensus        10 C~h--~C~n~~g~~~C~C~~Gy~L~~D~~tC~   39 (51)
T d2p3ua1          10 CDQ--FCHEEQNSVVCSCARGYTLADNGKACI   39 (51)
T ss_dssp             CSS--EEEEETTEEEEECCTTEEECTTSSCEE
T ss_pred             ccc--EeecCCCCeEeEcCCCCEECCCCCccc
Confidence            544  788888888888888887    55555

>d1kloa1 g.3.11.2 (A:11-65) Laminin gamma1 chain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: Laminin-type module
domain: Laminin gamma1 chain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.86  E-value=0.047  Score=36.46  Aligned_cols=41  Identities=27%  Similarity=0.757  Sum_probs=24.3

Q ss_pred             CCCCCCeeeeC-CCCceEe-eCCCCCcCCCCCcCCCcCCCCCC
Q psy15407        404 PCRNSGTCKLL-EEGRFNC-ECAPGYTGDRCEINIDDCLSHKC  444 (604)
Q Consensus       404 ~C~~~~~C~~~-~~~~~~C-~C~~g~~g~~C~~~~~~C~~~~C  444 (604)
                      +|.++++|... ..+...| .|..||+|..|+.-.+....+|.
T Consensus         2 pC~~~~~c~~~~~~~~~vC~~C~~~~~G~~Ce~C~~g~yg~P~   44 (55)
T d1kloa1           2 PCPGGSSCAIVPKTKEVVCTHCPTGTAGKRCELCDDGYFGDPL   44 (55)
T ss_dssp             CSCTTCCEEECSSSCCEEECSCCTTEESTTSCEECTTEEEETT
T ss_pred             cCcCCCccceeCCCCCEEcCCCCCCCccCcccccCCccccCcc
Confidence            35555665432 3456677 59999999988743333333333

>d1jv2b4 g.3.11.6 (B:532-562) Integrin beta EGF-like domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: Integrin beta EGF-like domains
domain: Integrin beta EGF-like domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.44  E-value=0.021  Score=32.02  Aligned_cols=25  Identities=40%  Similarity=1.196  Sum_probs=18.0

Q ss_pred             CCCCCCEEeeCCCCeEeeeCCCCccCCCC
Q psy15407        521 MCQNGGTCVDGINDYTCKCEGDFVGKFCE  549 (604)
Q Consensus       521 ~C~~~~~C~~~~~~y~C~C~~G~~G~~C~  549 (604)
                      .|..+|.|.-.    .|.|.+||+|..|.
T Consensus         4 ~C~ghG~C~CG----~C~C~~gw~G~~CN   28 (31)
T d1jv2b4           4 MCSGHGQCSCG----DCLCDSDWTGYYCN   28 (31)
T ss_dssp             CSCCCTTCCST----TTCCCTTEESSSSC
T ss_pred             eccCCCcccCC----ceEccCCccccccc
Confidence            35666666554    58888888888875

>d1dx5i1 g.3.11.1 (I:345-387) Thrombomodulin, different EGF-like domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Thrombomodulin, different EGF-like domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.23  E-value=0.11  Score=31.28  Aligned_cols=30  Identities=30%  Similarity=0.727  Sum_probs=23.1

Q ss_pred             cCCCCCCCCCCCCCEEeeC-CCCeEeeeCCCCc
Q psy15407        513 NVDDCVNHMCQNGGTCVDG-INDYTCKCEGDFV  544 (604)
Q Consensus       513 ~~~~C~~~~C~~~~~C~~~-~~~y~C~C~~G~~  544 (604)
                      .+|.|...+|..  +|... .++|+|+|.+||.
T Consensus         3 ~vDPCf~~~CE~--qCqP~~~~~Y~CiCaeGFa   33 (43)
T d1dx5i1           3 PVDPCFRANCEY--QCQPLDQTSYLCVCAEGFA   33 (43)
T ss_dssp             CCCGGGGCCCSS--EEEECSSSCEEEECCTTEE
T ss_pred             ccccccCCCcce--eeeeCCCCcceEEeccccc
Confidence            356777777875  78764 4699999999996

>d1ijqa2 g.3.11.1 (A:643-692) Low density lipoprotein (LDL) receptor, different EGF domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Low density lipoprotein (LDL) receptor, different EGF domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.65  E-value=0.12  Score=33.48  Aligned_cols=14  Identities=21%  Similarity=0.707  Sum_probs=10.6

Q ss_pred             CCCCeEeeeCCCCc
Q psy15407        531 GINDYTCKCEGDFV  544 (604)
Q Consensus       531 ~~~~y~C~C~~G~~  544 (604)
                      ..++|+|.|+.||+
T Consensus        27 ~~~~y~C~C~~G~~   40 (50)
T d1ijqa2          27 HSPKFTCACPDGML   40 (50)
T ss_dssp             TCCSEEEECCTTCE
T ss_pred             CCCCEEEeCCCCCE
Confidence            34688888888886

>d2p3ua1 g.3.11.1 (A:87-137) Factor X, N-terminal module {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor X, N-terminal module
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.93  E-value=0.074  Score=34.79  Aligned_cols=28  Identities=25%  Similarity=0.819  Sum_probs=21.0

Q ss_pred             CCCCCCCceeecCCCeEEecCCCCc----CCcCc
Q psy15407        482 NPCRNGARCLDHFSHYTCECTPGFS----GVNCT  511 (604)
Q Consensus       482 ~~C~~~~~C~~~~~~~~C~C~~g~~----g~~c~  511 (604)
                      +.|+  ..|++++++|+|.|++||.    |..|.
T Consensus         8 GgC~--h~C~n~~g~~~C~C~~Gy~L~~D~~tC~   39 (51)
T d2p3ua1           8 GDCD--QFCHEEQNSVVCSCARGYTLADNGKACI   39 (51)
T ss_dssp             GGCS--SEEEEETTEEEEECCTTEEECTTSSCEE
T ss_pred             CCcc--cEeecCCCCeEeEcCCCCEECCCCCccc
Confidence            4565  3688889999999999997    55554

>d1dx5i1 g.3.11.1 (I:345-387) Thrombomodulin, different EGF-like domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Thrombomodulin, different EGF-like domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.59  E-value=0.22  Score=29.89  Aligned_cols=31  Identities=29%  Similarity=0.922  Sum_probs=21.6

Q ss_pred             cCCCCCCCCCCCCCeeeeCCCCceEeeCCCCCc
Q psy15407        396 MIDACYGNPCRNSGTCKLLEEGRFNCECAPGYT  428 (604)
Q Consensus       396 ~~~~C~~~~C~~~~~C~~~~~~~~~C~C~~g~~  428 (604)
                      .+|.|...+|..  +|.....+.|+|.|..||.
T Consensus         3 ~vDPCf~~~CE~--qCqP~~~~~Y~CiCaeGFa   33 (43)
T d1dx5i1           3 PVDPCFRANCEY--QCQPLDQTSYLCVCAEGFA   33 (43)
T ss_dssp             CCCGGGGCCCSS--EEEECSSSCEEEECCTTEE
T ss_pred             ccccccCCCcce--eeeeCCCCcceEEeccccc
Confidence            356677766654  6776666778888888875

>d1ijqa2 g.3.11.1 (A:643-692) Low density lipoprotein (LDL) receptor, different EGF domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Low density lipoprotein (LDL) receptor, different EGF domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.94  E-value=0.21  Score=32.34  Aligned_cols=15  Identities=33%  Similarity=0.880  Sum_probs=11.3

Q ss_pred             ecCCCeEEecCCCCc
Q psy15407        492 DHFSHYTCECTPGFS  506 (604)
Q Consensus       492 ~~~~~~~C~C~~g~~  506 (604)
                      +..++|+|.|+.||+
T Consensus        26 n~~~~y~C~C~~G~~   40 (50)
T d1ijqa2          26 PHSPKFTCACPDGML   40 (50)
T ss_dssp             TTCCSEEEECCTTCE
T ss_pred             cCCCCEEEeCCCCCE
Confidence            344678888888886

>d1kigl_ g.3.11.1 (L:) Factor X, N-terminal module {Cow (Bos taurus) [TaxId: 9913]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor X, N-terminal module
species: Cow (Bos taurus) [TaxId: 9913]

Probab=84.07  E-value=0.11  Score=33.92  Aligned_cols=27  Identities=26%  Similarity=0.733  Sum_probs=21.4

Q ss_pred             CCCCCCEEeeCCCCeEeeeCCCCc----cCCCC
Q psy15407        521 MCQNGGTCVDGINDYTCKCEGDFV----GKFCE  549 (604)
Q Consensus       521 ~C~~~~~C~~~~~~y~C~C~~G~~----G~~C~  549 (604)
                      .|++  .|+++.++|+|.|++||+    |..|+
T Consensus         7 gC~h--~C~~~~~~~~C~C~~Gy~L~~D~~tC~   37 (51)
T d1kigl_           7 GCDQ--FCREERSEVRCSCAHGYVLGDDSKSCV   37 (51)
T ss_dssp             SSSS--CCCEETTEECCCCCTTEEECTTSSCEE
T ss_pred             Cccc--EeEcCCCcEEeEcCCCCEECCCCCccc
Confidence            3554  688999999999999997    55554

>d1jv2b5 g.3.11.6 (B:563-605) Integrin beta EGF-like domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: Integrin beta EGF-like domains
domain: Integrin beta EGF-like domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.84  E-value=0.44  Score=29.43  Aligned_cols=23  Identities=30%  Similarity=0.537  Sum_probs=17.0

Q ss_pred             CCceeCCCCCCCeeeecC-CCCcCCCCCCC
Q psy15407        571 NGICFQPQGSNDYLCKCA-PGYSGKESLLQ  599 (604)
Q Consensus       571 ~g~C~~~~g~~~~~C~C~-~G~~G~~C~~~  599 (604)
                      +|.|+-.      +|+|. +||.|++||..
T Consensus        16 ~G~C~cG------~C~C~~~gy~G~~Ce~C   39 (43)
T d1jv2b5          16 RGKCECG------SCVCIQPGSYGDTCEKC   39 (43)
T ss_dssp             TEEEETT------EEEECCSSCBSTTSCBC
T ss_pred             CCEEECC------EeEeCCCCccCCccccC
Confidence            3557643      39995 79999999863

>d1kloa3 g.3.11.2 (A:122-172) Laminin gamma1 chain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: Laminin-type module
domain: Laminin gamma1 chain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=80.35  E-value=0.2  Score=32.61  Aligned_cols=17  Identities=24%  Similarity=0.673  Sum_probs=12.7

Q ss_pred             EeeeCCCCccCCCCcCc
Q psy15407        536 TCKCEGDFVGKFCEIAP  552 (604)
Q Consensus       536 ~C~C~~G~~G~~C~~~~  552 (604)
                      +|.|++++.|.+|+...
T Consensus        21 qC~Ck~~v~G~~Cd~C~   37 (51)
T d1kloa3          21 QCQCLPHVSGRDCGTCD   37 (51)
T ss_dssp             CCCBCTTEESTTCCEEC
T ss_pred             eecCCCCCcCCCccccc
Confidence            67788888888877653