Psyllid ID: psy15432
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 1255 | 2.2.26 [Sep-21-2011] | |||||||
| P48760 | 587 | Folylpolyglutamate syntha | yes | N/A | 0.432 | 0.925 | 0.337 | 9e-88 | |
| Q05932 | 587 | Folylpolyglutamate syntha | yes | N/A | 0.415 | 0.889 | 0.342 | 3e-87 | |
| Q924L9 | 587 | Folylpolyglutamate syntha | yes | N/A | 0.424 | 0.908 | 0.336 | 3e-87 | |
| A6H751 | 585 | Folylpolyglutamate syntha | yes | N/A | 0.415 | 0.892 | 0.337 | 2e-85 | |
| Q09509 | 510 | Putative folylpolyglutama | yes | N/A | 0.219 | 0.541 | 0.431 | 9e-62 | |
| Q54CY5 | 626 | Putative folylpolyglutama | yes | N/A | 0.416 | 0.835 | 0.313 | 3e-61 | |
| F4J2K2 | 625 | Folylpolyglutamate syntha | yes | N/A | 0.318 | 0.64 | 0.329 | 5e-58 | |
| Q8W035 | 492 | Folylpolyglutamate syntha | no | N/A | 0.271 | 0.693 | 0.341 | 3e-55 | |
| O13492 | 528 | Folylpolyglutamate syntha | N/A | N/A | 0.310 | 0.738 | 0.297 | 2e-52 | |
| F4K2A1 | 571 | Folylpolyglutamate syntha | no | N/A | 0.214 | 0.471 | 0.413 | 6e-52 |
| >sp|P48760|FOLC_MOUSE Folylpolyglutamate synthase, mitochondrial OS=Mus musculus GN=Fpgs PE=1 SV=3 | Back alignment and function desciption |
|---|
Score = 326 bits (835), Expect = 9e-88, Method: Compositional matrix adjust.
Identities = 213/632 (33%), Positives = 319/632 (50%), Gaps = 89/632 (14%)
Query: 37 GAVTPHASR-------SNKEIPQSYVDAIKQLNTLQSNIRTIRESKL-RKDPVEMQAVQV 88
GA T A+R + +E Y DA++ LNTLQ+N + + K R DP Q+
Sbjct: 21 GATTEGAARRGMSAWPAPQEPGMEYQDAVRTLNTLQTNASYLEQVKRQRSDP----QAQL 76
Query: 89 DQVVQYLGHLNITLDDIKKLNVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEV 148
+ + YL + ++D+ +LN+IH++GTKGKGSTCA+ E ILR++G TGFFSSPH+++V
Sbjct: 77 EAMEMYLARSGLQVEDLNRLNIIHVTGTKGKGSTCAFTERILRNYGLKTGFFSSPHMVQV 136
Query: 149 RERIKLNGEPISYDKFTKYFWTVYNALHAKRKHAE-DMPAYFKFLTVMSFYVFVKEKPDA 207
RERI++NG+PIS + FTK+FW +YN L + + MP+YF+FLT+M+F+VF++EK D
Sbjct: 137 RERIRINGKPISPELFTKHFWCLYNQLEEFKDDSHVSMPSYFRFLTLMAFHVFLQEKVDL 196
Query: 208 VIMEVGIGGRYDNTNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIMKPNCIAVTS 267
++EVGIGG +D TNII V G++SLG DHT++LG+T+E+I QK GI KP A T
Sbjct: 197 AVVEVGIGGAFDCTNIIRKPVVCGVSSLGIDHTSLLGDTVEKIAWQKGGIFKPGVPAFTV 256
Query: 268 ANQRGPCKQILLETSRALNCVLLEAPSILNYRWRGQPLDEDWKSTVQSINISLAIQLAYL 327
GP +L + ++ + C L P + G PL + Q N +LA+QLA+
Sbjct: 257 VQPEGPLA-VLRDRAQQIGCPLYLCPPLEALEEVGLPLSLGLEGAHQRSNAALALQLAHC 315
Query: 328 WMFRMNKSAELKSVIDKFLAEMRVSSPNETPGGQGHLSSCETPGGQGHLSFSETPGGQGH 387
W+ R + + + E++VS P+
Sbjct: 316 WLERQDH---------QDIQELKVSRPS-------------------------------- 334
Query: 388 LTGNQSSLLMGPHFEIDPKTYRGIKACVWPGRVQVIRKNNFKYFLDGAHTTDSIELCAKW 447
+ L + P F P RG++ VWPGR Q++++ ++LDGAHTT S++ C W
Sbjct: 335 ---IRWQLPLAPVFRPTPHMRRGLRDTVWPGRTQILQRGPLTWYLDGAHTTSSVQACVHW 391
Query: 448 FLRKSEAEASSSRSVSSCPLDPTQSKSSNVIQRILVFNVTGERDPTKLLSPLLQSNQFEY 507
+ R+S L+ ++ IL+FN TG+RD LL LLQ QF+Y
Sbjct: 392 Y-RQS--------------LERSKRTDGGSEVHILLFNSTGDRDSAALLK-LLQPCQFDY 435
Query: 508 ILVTPNILTNESSPDT-QYGGNRTIDRFGVKLDSRTAAPNGGHEPGRPNVGQGGGGFQSR 566
+ PN+ S + Q T+D+ ++ NG E Q S
Sbjct: 436 AVFCPNVTEVSSIGNADQQNFTVTLDQVLLRCLQHQQHWNGLAE------KQASSNLWSS 489
Query: 567 SGDNSIRSNANPLSSVDCHNVNDQSNSFHKIATVASALSQ-RSKVVEFSS----VLDTYN 621
G + + L+ S F I+ +SQ R + + S +L+
Sbjct: 490 CGPDPAGPGSLLLAPHPPQPTRTSSLVFSCISHALLWISQGRDPIFQPQSLPRNLLNHPT 549
Query: 622 FKYG---LDPSKEYHILVTGSLHLVGAFLNVL 650
G L + H+LVTGSLHLVG L +L
Sbjct: 550 ANSGASILREAAAIHVLVTGSLHLVGGVLKLL 581
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Catalyzes conversion of folates to polyglutamate derivatives allowing concentration of folate compounds in the cell and the intracellular retention of these cofactors, which are important substrates for most of the folate-dependent enzymes that are involved in one-carbon transfer reactions involved in purine, pyrimidine and amino acid synthesis. Dihydrofolate, tetrahydrofolate, 5,10-methylenetetrahydrofolate, 10-formyltetrahydrofolate and 5-formyltetrahydrofolate are the best substrates. Folic acid and 5-methyltetrahydrofolate can also act as substrates. Mus musculus (taxid: 10090) EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: 1EC: 7 |
| >sp|Q05932|FOLC_HUMAN Folylpolyglutamate synthase, mitochondrial OS=Homo sapiens GN=FPGS PE=1 SV=3 | Back alignment and function description |
|---|
Score = 324 bits (830), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 214/624 (34%), Positives = 309/624 (49%), Gaps = 102/624 (16%)
Query: 48 KEIPQSYVDAIKQLNTLQSNIRTIRESKL-RKDPVEMQAVQVDQVVQYLGHLNITLDDIK 106
+E Y DA++ LNTLQ+N + + K R DP Q++ + YL + ++D+
Sbjct: 39 QEPSMEYQDAVRMLNTLQTNAGYLEQVKRQRGDP----QTQLEAMELYLARSGLQVEDLD 94
Query: 107 KLNVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTK 166
+LN+IH++GTKGKGSTCA+ E ILRS+G TGFFSSPHL++VRERI++NG+PIS + FTK
Sbjct: 95 RLNIIHVTGTKGKGSTCAFTECILRSYGLKTGFFSSPHLVQVRERIRINGQPISPELFTK 154
Query: 167 YFWTVYNAL-HAKRKHAEDMPAYFKFLTVMSFYVFVKEKPDAVIMEVGIGGRYDNTNIIP 225
YFW +Y+ L K MP YF+FLT+M+F+VF++EK D ++EVGIGG YD TNII
Sbjct: 155 YFWRLYHRLEETKDGSCVSMPPYFRFLTLMAFHVFLQEKVDLAVVEVGIGGAYDCTNIIR 214
Query: 226 NTAVVGITSLGYDHTAVLGNTIEEITMQKAGIMKPNCIAVTSANQRGPCKQILLETSRAL 285
V G++SLG DHT++LG+T+E+I QK GI K A T GP +L + ++ +
Sbjct: 215 KPVVCGVSSLGIDHTSLLGDTVEKIAWQKGGIFKQGVPAFTVLQPEGPLA-VLRDRAQQI 273
Query: 286 NCVLLEAPSILNYRWRGQPLDEDWKSTVQSINISLAIQLAYLWMFRMNKSAELKSVIDKF 345
+C L P + G PL + Q N +LA+QLA+ W+ R ++
Sbjct: 274 SCPLYLCPMLEALEEGGPPLTLGLEGEHQRSNAALALQLAHCWLQRQDRHGA-------- 325
Query: 346 LAEMRVSSPNETPGGQGHLSSCETPGGQGHLSFSETPGGQGHLTGNQSSLLMGPHFEIDP 405
E + S P G L + P F+
Sbjct: 326 -GEPKASRP-----------------------------------GLLWQLPLAPVFQPTS 349
Query: 406 KTYRGIKACVWPGRVQVIRKNNFKYFLDGAHTTDSIELCAKWFLRKSEAEASSSRSVSSC 465
G++ WPGR QV+R+ ++LDGAHT S + C +WF +
Sbjct: 350 HMRLGLRNTEWPGRTQVLRRGPLTWYLDGAHTASSAQACVRWFRQA-------------- 395
Query: 466 PLDPTQSKSSNVIQRILVFNVTGERDPTKLLSPLLQSNQFEYILVTPNILTNESSPDT-Q 524
L + S R+L+FN TG+RDP LL LLQ QF+Y + PN+ S+ + Q
Sbjct: 396 -LQGRERPSGGPEVRVLLFNATGDRDPAALLK-LLQPCQFDYAVFCPNLTEVSSTGNADQ 453
Query: 525 YGGNRTIDRFGVK----------LDSRTAAPNGGHEPGRPNVGQGGGGFQSRSGDNSIRS 574
T+D+ ++ LD A+P+ P P G G S+
Sbjct: 454 QNFTVTLDQVLLRCLEHQQHWNHLDEEQASPDLWSAPS-PEPG----------GSASLLL 502
Query: 575 NANPLSSVDCHNVNDQSNSFHKIATVASALSQ-RSKVVEFSSV---LDTYNFKYG----L 626
+P H + S F I+ +SQ R + + S L T+ + L
Sbjct: 503 APHP-----PHTCSASSLVFSCISHALQWISQGRDPIFQPPSPPKGLLTHPVAHSGASIL 557
Query: 627 DPSKEYHILVTGSLHLVGAFLNVL 650
+ H+LVTGSLHLVG L +L
Sbjct: 558 REAAAIHVLVTGSLHLVGGVLKLL 581
|
Catalyzes conversion of folates to polyglutamate derivatives allowing concentration of folate compounds in the cell and the intracellular retention of these cofactors, which are important substrates for most of the folate-dependent enzymes that are involved in one-carbon transfer reactions involved in purine, pyrimidine and amino acid synthesis. Unsubstitued reduced folates are the preferred substrates. Metabolizes methotrexate (MTX) to polyglutamates. Homo sapiens (taxid: 9606) EC: 6 EC: . EC: 3 EC: . EC: 2 EC: . EC: 1 EC: 7 |
| >sp|Q924L9|FOLC_CRIGR Folylpolyglutamate synthase, mitochondrial OS=Cricetulus griseus GN=FPGS PE=2 SV=1 | Back alignment and function description |
|---|
Score = 324 bits (830), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 216/642 (33%), Positives = 323/642 (50%), Gaps = 109/642 (16%)
Query: 37 GAVTPHASR-------SNKEIPQSYVDAIKQLNTLQSNIRTIRESKL-RKDP-VEMQAVQ 87
GA T A+R + +E Y DA++ LNTLQ+N + + K R DP +++A++
Sbjct: 21 GATTEGAARRWLSAWPAPQEPGMEYQDAVRMLNTLQTNASYLEQVKRQRSDPQAQLEAME 80
Query: 88 VDQVVQYLGHLNITLDDIKKLNVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIE 147
V YL + ++D+ +LN+IH++GTKGKGSTCA+ E ILRS+G TGFFSSPHL++
Sbjct: 81 V-----YLARSGLQVEDLNQLNIIHVTGTKGKGSTCAFTERILRSYGLKTGFFSSPHLVQ 135
Query: 148 VRERIKLNGEPISYDKFTKYFWTVYNALHAKRKHAE-DMPAYFKFLTVMSFYVFVKEKPD 206
VRERI++NG+PIS + FTK+FW +Y+ L + + MPAYF+FLT+M+F+VF++EK D
Sbjct: 136 VRERIRINGKPISPELFTKHFWRLYHQLEEFKDDSHVAMPAYFRFLTLMAFHVFLQEKVD 195
Query: 207 AVIMEVGIGGRYDNTNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIMKPNCIAVT 266
++EVGIGG YD TNII V G++SLG DHT++LG+T+E+I QK GI KP A T
Sbjct: 196 LAVVEVGIGGAYDCTNIIRKPVVCGVSSLGMDHTSLLGDTVEKIAWQKGGIFKPGVPAFT 255
Query: 267 SANQRGPCKQILLETSRALNCVLLEAPSILNYRWRGQPLDEDWKSTVQSINISLAIQLAY 326
GP +L + ++ +C L P + G PL + Q N +LA+QLA+
Sbjct: 256 VLQPEGPLA-VLRDRAQQTSCPLYLCPPLEALEDGGLPLTLGLEGEHQRSNAALALQLAH 314
Query: 327 LWMFRMNKSAELKSVIDKFLAEMRVSSPNETPGGQGHLSSCETPGGQGHLSFSETPGGQG 386
W+ + + + + E++VS P+
Sbjct: 315 CWLEQQDH---------QDIRELKVSRPS------------------------------- 334
Query: 387 HLTGNQSSLLMGPHFEIDPKTYRGIKACVWPGRVQVIRKNNFKYFLDGAHTTDSIELCAK 446
+ L + P F G++ WPGR QV+R+ ++LDGAHTT S++ C +
Sbjct: 335 ----MRWQLPLAPVFHPTSHMRHGLRDTEWPGRTQVLRRGPLTWYLDGAHTTSSVQACVR 390
Query: 447 WFLRKSEAEASSSRSVSSCPLDPTQSKSSNVIQRILVFNVTGERDPTKLLSPLLQSNQFE 506
W+ + L ++ S +L+FN TG+RD LL LLQ QF+
Sbjct: 391 WYCQS---------------LQRSKHPSGGPEVYVLLFNSTGDRDSAALLK-LLQPCQFD 434
Query: 507 YILVTPNILTNESSPDT-QYGGNRTIDRFGVK----------LDSRTAAPN----GGHEP 551
Y + PN+ S+ + Q T+D+ ++ L + A+P+ EP
Sbjct: 435 YAVFCPNLTEVSSTENADQQNFTVTLDQVLLRCLQHQQHWSCLSEKQASPDFLSSPSPEP 494
Query: 552 GRPNVGQGGGGFQSRSGDNSIRSNANPLSSVDCHNVNDQSNSFHKIATVAS---ALSQRS 608
GRP Q +G NS+ + S H + S I S +L
Sbjct: 495 GRPGSLQPALRPPHSTGTNSL------VFSCISHALQWISQGRDPIFQAPSPPRSLLSHP 548
Query: 609 KVVEFSSVLDTYNFKYGLDPSKEYHILVTGSLHLVGAFLNVL 650
+S+L + H+LVTGSLHLVG L +L
Sbjct: 549 TASSGASILRE---------AGAIHVLVTGSLHLVGGVLKLL 581
|
Catalyzes conversion of folates to polyglutamate derivatives allowing concentration of folate compounds in the cell and the intracellular retention of these cofactors, which are important substrates for most of the folate-dependent enzymes that are involved in one-carbon transfer reactions involved in purine, pyrimidine and amino acid synthesis. Cricetulus griseus (taxid: 10029) EC: 6 EC: . EC: 3 EC: . EC: 2 EC: . EC: 1 EC: 7 |
| >sp|A6H751|FOLC_BOVIN Folylpolyglutamate synthase, mitochondrial OS=Bos taurus GN=FPGS PE=2 SV=1 | Back alignment and function description |
|---|
Score = 318 bits (814), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 211/625 (33%), Positives = 315/625 (50%), Gaps = 103/625 (16%)
Query: 48 KEIPQSYVDAIKQLNTLQSNIRTIRESKLRK-DPVEMQAVQVDQVVQYLGHLNITLDDIK 106
+E Y DA++ LNTLQ+N + K ++ DP Q++ + YL + ++D+
Sbjct: 36 QEPDMEYQDAVRTLNTLQTNANYLEMVKRKRGDP----QTQLEAMKLYLARSGLQVEDLD 91
Query: 107 KLNVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTK 166
+LN+IHI+GTKGKGSTCA+ E ILRS+G TGFFSSPHL++VRERI++NG+PIS + FTK
Sbjct: 92 QLNIIHITGTKGKGSTCAFTERILRSYGLKTGFFSSPHLVQVRERIRINGQPISSELFTK 151
Query: 167 YFWTVYNALHAKRKHAE--DMPAYFKFLTVMSFYVFVKEKPDAVIMEVGIGGRYDNTNII 224
+FW +Y+ L + + MP YF+FLT+M+F+VF++EK D ++EVGIGG YD TNII
Sbjct: 152 HFWRLYHRLEETKDDSSCVSMPGYFRFLTLMAFHVFLQEKVDLAVLEVGIGGAYDCTNII 211
Query: 225 PNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIMKPNCIAVTSANQRGPCKQILLETSRA 284
V GITSLG DHT +LG+T+E+I QK GI K A T P +L + ++
Sbjct: 212 RKPVVCGITSLGIDHTGLLGDTMEKIAWQKGGIFKSGVPAFTVLQPDEPLA-VLRDRAQQ 270
Query: 285 LNCVLLEAPSILNYRWRGQPLDEDWKSTVQSINISLAIQLAYLWMFRMNKSAELKSVIDK 344
++C L P + G PL + Q N +LA+Q+A W+ + K D
Sbjct: 271 ISCPLYLCPPLQALEEGGPPLTLGLEGEHQRSNAALALQVARCWL-------QQKGYQDA 323
Query: 345 FLAEMRVSSPNETPGGQGHLSSCETPGGQGHLSFSETPGGQGHLTGNQSSLLMGPHFEID 404
E++ S P+ PG L + P F+
Sbjct: 324 --GELKASRPS-LPG----------------------------------QLPLAPVFQPT 346
Query: 405 PKTYRGIKACVWPGRVQVIRKNNFKYFLDGAHTTDSIELCAKWFLRKSEAEASSSRSVSS 464
P+ +G++ WPGR Q++R+ ++LDGAHTT S++ C +WF +++
Sbjct: 347 PRMQQGLRHTEWPGRTQLLRRGPLTWYLDGAHTTSSMQACVRWF----------RQALHR 396
Query: 465 CPLDPTQSKSSNVIQRILVFNVTGERDPTKLLSPLLQSNQFEYILVTPNILTNESSPDT- 523
C + S R+L+FN TG+RD LL LLQ QF+Y + PN+ S+ +
Sbjct: 397 C-----ERPDSGSEVRVLLFNSTGDRDSAALLK-LLQPCQFDYAIFCPNLAEMASTDNAD 450
Query: 524 QYGGNRTIDRFGV----------KLDSRTAAPNGGHEPGRPNVGQGGGGFQSRSGDNSIR 573
Q T+D+ + +L +P+ PG Q + G S+
Sbjct: 451 QQNFTVTLDQVLLRCLAHQQHWSRLHEEQVSPDPWSTPG-----------QEQDGPASLL 499
Query: 574 SNANPLSSVDCHNVNDQSNSFHKIATVASALSQ-RSKVVEFSS----VLDTYNFKYG--- 625
+P H + S F I+ ++Q R + + S +L G
Sbjct: 500 LAPHP-----PHTHSASSLVFSCISHALQWITQGRDPLFQPPSPPRGLLAHPVADSGATV 554
Query: 626 LDPSKEYHILVTGSLHLVGAFLNVL 650
L + + H+LVTGSLHLVG L +L
Sbjct: 555 LQEAADIHVLVTGSLHLVGGVLKLL 579
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Catalyzes conversion of folates to polyglutamate derivatives allowing concentration of folate compounds in the cell and the intracellular retention of these cofactors, which are important substrates for most of the folate-dependent enzymes that are involved in one-carbon transfer reactions involved in purine, pyrimidine and amino acid synthesis. Bos taurus (taxid: 9913) EC: 6 EC: . EC: 3 EC: . EC: 2 EC: . EC: 1 EC: 7 |
| >sp|Q09509|FOLC_CAEEL Putative folylpolyglutamate synthase OS=Caenorhabditis elegans GN=F25B5.6 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 239 bits (610), Expect = 9e-62, Method: Compositional matrix adjust.
Identities = 122/283 (43%), Positives = 184/283 (65%), Gaps = 7/283 (2%)
Query: 46 SNKEIPQSYVDAIKQLNTLQSNIRTIRESKLRKDPVEMQAVQVDQVVQYLGHLNITLDDI 105
S K +P Y ++++ LN LQSN TI+ KLR +QA+ + Q +YL LNI+ +D+
Sbjct: 29 SEKAVP-CYEESVRLLNGLQSNAATIK--KLRVQRENLQAINLPQCRKYLESLNISAEDL 85
Query: 106 KKLNVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFT 165
LN+IH+SGTKGKGS CA+ ESILRS G TGF+SSPHL+ VRERI+++G+P+S F
Sbjct: 86 NALNIIHVSGTKGKGSACAFVESILRSQGLRTGFYSSPHLVHVRERIQVDGQPVSEQMFA 145
Query: 166 KYFWTVYNALHAKRKHAEDMPAYFKFLTVMSFYVFVKEKPDAVIMEVGIGGRYDNTNIIP 225
+ F+ VY+ + KR+H+++MPAYFKFLT+++F +FVK +I+EVGIGG YD TN++
Sbjct: 146 EEFFHVYDII--KREHSDNMPAYFKFLTLLAFRIFVKLNVQVMILEVGIGGEYDCTNVVE 203
Query: 226 NTAVVGITSLGYDHTAVLGNTIEEITMQKAGIMKPNCIAVTSANQRGPCKQILLETSRAL 285
V G+T+L YDH ++LGN + EI KAGI K + A S +++L+ + +
Sbjct: 204 KPKVCGVTTLDYDHMSILGNKLSEIAWHKAGIFKESVPAFYSPTTT-EAEEVLIARAISK 262
Query: 286 NCVLLEAPSILNYRWRGQPLDEDWKSTVQSINISLAIQLAYLW 328
+ L + P + Y++ + + + Q N+S+A+QL W
Sbjct: 263 HVPLFQTPPVSAYQF-ARDISPGIRGAHQFSNVSMALQLVRAW 304
|
Catalyzes conversion of folates to polyglutamate derivatives allowing concentration of folate compounds in the cell and the intracellular retention of these cofactors, which are important substrates for most of the folate-dependent enzymes that are involved in one-carbon transfer reactions involved in purine, pyrimidine and amino acid synthesis. Caenorhabditis elegans (taxid: 6239) EC: 6 EC: . EC: 3 EC: . EC: 2 EC: . EC: 1 EC: 7 |
| >sp|Q54CY5|FOLC_DICDI Putative folylpolyglutamate synthase OS=Dictyostelium discoideum GN=folC PE=3 SV=1 | Back alignment and function description |
|---|
Score = 238 bits (606), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 194/619 (31%), Positives = 289/619 (46%), Gaps = 96/619 (15%)
Query: 52 QSYVDAIKQLNTLQSNIRTIRE-SKLRKDPVEMQA-VQVDQVVQYLGHLNITLDDIKKLN 109
+SY +A+ L TLQSN I +K R+D E A ++++ Y L+I D+++ +
Sbjct: 79 RSYEEAVNALLTLQSNQTVIISWTKERRDNKEESAKFLMEEMRNYCKTLSI---DLERES 135
Query: 110 VIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTKYFW 169
+IH++GTKGKGSTCA ESI+R GFSTG F+SPHLI RERI++NGE IS + F++YFW
Sbjct: 136 IIHVAGTKGKGSTCAITESIIREQGFSTGLFTSPHLISPRERIRINGEMISKEMFSQYFW 195
Query: 170 TVYNALHAKRKHAEDMPAYFKFLTVMSFYVFVKEKPDAVIMEVGIGGRYDNTNIIPNTAV 229
++ L + + +P +F++LT+M+ +F E I+EVGIGGR D+TN+ P V
Sbjct: 196 NCWDLL--IKDYQTQLPNFFRYLTLMALKIFQDEAIQCTILEVGIGGRMDSTNVFPKPMV 253
Query: 230 VGITSLGYDHTAVLGNTIEEITMQKAGIMKPNCIAVTSANQRGPCKQILLETSRALNCVL 289
GI++LGYDH +LGNT+ EI ++KAGIMK T ++Q +L++ S + L
Sbjct: 254 TGISALGYDHQNLLGNTLAEIALEKAGIMKVGIPIFTVSSQLPEAINVLIDHSNKVKSPL 313
Query: 290 LEAPSILNYRWRGQPLDED--------WKSTVQSINISLAIQLAYLWMFRMNKSAELKSV 341
PSI Y + + K T Q N SLAI LA W K K V
Sbjct: 314 SIVPSIDQYTISSGGGNNNNNKIESIGLKGTHQLENASLAIALANCWF----KKQTFKDV 369
Query: 342 IDKFLAEMRVSSPNETPGGQGHLSSCETPGGQGHLSFSETPGGQGHLTGNQSSLLMGPHF 401
NE + H + T N + P
Sbjct: 370 -------------NEIFNSENH-------------------KQYNYETNNYNVTQFTPLL 397
Query: 402 EIDPKTYRGIKACVWPGRVQVIRK----NNFKYFLDGAHTTDSIELCAKWFLRKSEAEAS 457
+ G+K C W GR Q N ++LDGAHT +S + W+ KS +
Sbjct: 398 K---SIELGLKNCEWAGRAQHFTNPSHFPNMDFYLDGAHTVESSIVMLNWW--KSIVNTT 452
Query: 458 SSRSVSSCPLDPTQSKSSNVIQRILVFNVTGERDPTKLLSPLLQSNQFEYI-----LVTP 512
++ + ++ + + IL+FN TG R+PT L+P++QS + I + P
Sbjct: 453 TTTTTTTTTTTTNNNDDDTI--HILIFNSTGGRNPTSFLTPIIQSIDNKEIPIFNKSIIP 510
Query: 513 NILTNESSPDTQYGGNRTIDRFGVKLDSRTAAPNGGHEPGRPNVGQGGGGFQSRSGDNSI 572
NI+ E D +Y N I + T P+ V Q +S + ++ +
Sbjct: 511 NIII-EKPIDKKYYINEIIQSNQSSTATTTPIPDNAA------VKQTTEIKESSTWEDFV 563
Query: 573 RSNANPLSSVDCHNVNDQSNSFHKIATVASALSQRSKVVEFSSVLDTYNFKYGLDPSKEY 632
V+C+ + S H T S S E S + +K
Sbjct: 564 ---------VECY--DKLSKKSHPCITADSIESSIEIAKELSE-----------NGTKNV 601
Query: 633 HILVTGSLHLVGAFLNVLI 651
+L+TGSL+LVG L VL+
Sbjct: 602 KVLITGSLYLVGGVLKVLL 620
|
Conversion of folates to polyglutamate derivatives. Dictyostelium discoideum (taxid: 44689) EC: 6 EC: . EC: 3 EC: . EC: 2 EC: . EC: 1 EC: 7 |
| >sp|F4J2K2|FPGS2_ARATH Folylpolyglutamate synthase OS=Arabidopsis thaliana GN=FPGS2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 227 bits (578), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 160/486 (32%), Positives = 230/486 (47%), Gaps = 86/486 (17%)
Query: 53 SYVDAIKQLNTLQSNIRTIRESKLRKDPVEMQAVQVDQVVQYLGHLNITLDDIKKLNVIH 112
SY DA++ L+TL S R ++ + P + +++QVV YL L++ D IK+L VIH
Sbjct: 82 SYDDAMEALSTLIS-----RRNRGDRTPTKGNRDKLEQVVTYLKILDLE-DKIKELKVIH 135
Query: 113 ISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTKYFWTVY 172
++GTKGKGSTC + E+ILR+ GF TG F+SPHLI+VRER +++G IS +KF +YFW +
Sbjct: 136 VAGTKGKGSTCVFSEAILRNCGFRTGMFTSPHLIDVRERFRIDGLDISEEKFLQYFWECW 195
Query: 173 NALHAKRKHAEDMPAYFKFLTVMSFYVFVKEKPDAVIMEVGIGGRYDNTNIIPNTAVVGI 232
L K MP F+FLTV++F +FV EK D ++EVG+GG+ D+TN+I V GI
Sbjct: 196 KLLKEKAVDGLTMPPLFQFLTVLAFKIFVCEKVDVAVIEVGLGGKLDSTNVIQKPVVCGI 255
Query: 233 TSLGYDHTAVLGNTIEEITMQKAGIMKPNCIAVTSANQRGPCKQILLETSRALNCVLLEA 292
SLG DH +LGNT+ +I KAGI KP A T Q +L +T+ L L
Sbjct: 256 ASLGMDHMDILGNTLADIAFHKAGIFKPQIPAFT-VPQLSEAMDVLQKTANNLEVPLEVV 314
Query: 293 PSILNYRWRGQPLDEDWKSTVQSINISLAIQLAYLWMFRMNKSAELKSVIDKFLAEMRVS 352
+ + G L Q +N LA+ L+ W+ R + K +
Sbjct: 315 APLEPKKLDGVTL--GLSGDHQLVNAGLAVSLSRCWLQR---TGNWKKIF---------- 359
Query: 353 SPNETPGGQGHLSSCETPGGQGHLSFSETPGGQGHLTGNQSSLLMGPHFEIDPKTYRGIK 412
PNE+ ET EI RG+
Sbjct: 360 -PNES---------------------KET--------------------EIPVAFCRGLA 377
Query: 413 ACVWPGRVQVIRK----------------NNFKYFLDGAHTTDSIELCAKWFLRKSEAEA 456
GR QV+ + ++LDGAH+ +S+E C +WF +
Sbjct: 378 TARLHGRAQVVHDVVSDPQDSSDSMETPCGDLIFYLDGAHSPESMEACGRWFSSAVRGDK 437
Query: 457 SSSRSVSSCPLDPTQSKSSN-VIQRILVFNVTGERDPTKLLSPLLQS-----NQFEYILV 510
S S +V+ N V ++IL+FN RDP LL L+ + F L
Sbjct: 438 SLSTAVNGYMRHGEYGTDLNRVSKQILLFNCMEVRDPQVLLPKLVTTCASSGTHFSRALF 497
Query: 511 TPNILT 516
P++ T
Sbjct: 498 VPSMST 503
|
Catalyzes conversion of folates to polyglutamate derivatives allowing concentration of folate compounds in the cell and the intracellular retention of these cofactors, which are important substrates for most of the folate-dependent enzymes that are involved in one-carbon transfer reactions involved in purine, pyrimidine and amino acid synthesis. Essential for organellar and whole-plant folate homeostasis. Arabidopsis thaliana (taxid: 3702) EC: 6 EC: . EC: 3 EC: . EC: 2 EC: . EC: 1 EC: 7 |
| >sp|Q8W035|FPGS3_ARATH Folylpolyglutamate synthase OS=Arabidopsis thaliana GN=FPGS3 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 218 bits (555), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 145/425 (34%), Positives = 207/425 (48%), Gaps = 84/425 (19%)
Query: 703 VVQYLGHLNITLDDIKKLNVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRE 762
+ YL L + D + ++ +IH++GTKGKGSTC + ESILR +G TG F+SPHLI+VRE
Sbjct: 42 LFHYLKVLELE-DAVSQMKIIHVAGTKGKGSTCTFAESILRCYGLRTGLFTSPHLIDVRE 100
Query: 763 RIKLNGEPISYDKFTKYFWTVYNALHAKRKHAEDMPAYFKFLTVMSFYVFVKEKPDAVIM 822
R +LNG IS +KF YFW ++ L K + MP YF FL +++F +F E+ D VI+
Sbjct: 101 RFRLNGIEISQEKFVNYFWCCFHKLKEKTSNEVPMPTYFCFLALLAFKIFTTEQVDVVIL 160
Query: 823 EVGIGGRYDNTNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIMKPNCIAVTSANQ 882
EVG+GGR+D TN+I V GI+SLGYDH +LG T+ EI +KAGI K A T A
Sbjct: 161 EVGLGGRFDATNVIQKPVVCGISSLGYDHMEILGYTLAEIAAEKAGIFKSGVPAFTVAQP 220
Query: 883 RGPCKQILLETSRALNCVLLEAPSILNYRWR-GQPLDEDWKSTVQS----INISLAIQLA 937
E R LN E S L + +PLD + +Q +N LA+ L
Sbjct: 221 D--------EAMRVLN----EKASKLEVNLQVVEPLDSSQRLGLQGEHQYLNAGLAVALC 268
Query: 938 YLWMFRMNKSAELKSVIDKFLAEMRVSSPNETPGGQGHLSSCETPGGQGHLSFSETPG-G 996
FL E+ + N +T G
Sbjct: 269 -----------------STFLKEIGIEDKN---------------------GLDQTNGLP 290
Query: 997 QGHLTGNQSSLLMGPHFEIDPKTYRGIKACVWPGRVQVIRKNNFKYFLDGAHTTDSIELC 1056
+ ++G ++ LMG +A + P Y+LDGAH+ +S+E C
Sbjct: 291 EKFISGLSNAYLMG-------------RAMIVPDSE---LPEEIVYYLDGAHSPESMEAC 334
Query: 1057 AKWFLRKSEAEANPTQSKSSNVIQRILVFNVTGERDPTKLLSPLLQSN------QFEYIL 1110
A WF ++ + Q +S ++IL+FN RDP+ LL P L+S F+ +
Sbjct: 335 AIWFSKQIKQNQERNQKRS----EQILLFNCMSVRDPSLLL-PRLRSKCIDQGVDFKRAV 389
Query: 1111 VTPNI 1115
PN+
Sbjct: 390 FVPNV 394
|
Catalyzes conversion of folates to polyglutamate derivatives allowing concentration of folate compounds in the cell and the intracellular retention of these cofactors, which are important substrates for most of the folate-dependent enzymes that are involved in one-carbon transfer reactions involved in purine, pyrimidine and amino acid synthesis. Essential for organellar and whole-plant folate homeostasis. Arabidopsis thaliana (taxid: 3702) EC: 6 EC: . EC: 3 EC: . EC: 2 EC: . EC: 1 EC: 7 |
| >sp|O13492|FOLE_NEUCR Folylpolyglutamate synthase OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=met-6 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 209 bits (531), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 146/490 (29%), Positives = 235/490 (47%), Gaps = 100/490 (20%)
Query: 632 YHIL--VTGSLHLVGAFLNVLITPH----ASRSNKEIPQSYVDAIKQLNTLQSNIRTIRE 685
+H+L + L LV ++ IT H R+ ++Y DAI LN+LQ+ I
Sbjct: 2 HHVLRPIAFRLALVSPLRSLTITHHHLFFTKRTMASSARTYNDAIDALNSLQTPFAVIEA 61
Query: 686 SKLRKDPVEMQAVQVDQVVQYLGHLNITLDDIKKLNVIHISGTKGKGSTCAYCESIL--- 742
RK + A V ++ YL + + D+ +LN++H++GTKGKG TCA+ +SIL
Sbjct: 62 R--RKAGIRPDAHSVKEMRAYLARIGYSSQDLDRLNIVHVAGTKGKGGTCAFVDSILTRH 119
Query: 743 -RSHGF--STGFFSSPHLIEVRERIKLNGEPISYDKFTKYFWTVYNALHAKRKHAEDM-- 797
R+HG G F+SPHLI VRERI+++ +PIS + F +YF+ V++ L + +++
Sbjct: 120 QRTHGIPRRIGLFTSPHLIAVRERIRIDSKPISEELFARYFFEVWDRLETSQLAKDEVEL 179
Query: 798 ---PAYFKFLTVMSFYVFVKEKPDAVIMEVGIGGRYDNTNIIPNTAVVGITSLGYDHTAV 854
P Y ++LT+MS++V++ E D I E GIGG YD TN++ V GI++LG DH V
Sbjct: 180 GSKPIYARYLTLMSYHVYLSEGVDVAIYETGIGGEYDATNVVDRPVVSGISTLGIDHVFV 239
Query: 855 LGNTIEEITMQKAGIMKPNCIAVTSANQRGPCKQILLETS--RALNCVLLEAPSILNYRW 912
LG+T+++I KAGIMK A T Q Q+L + + + ++ +L+ LN
Sbjct: 240 LGDTVDKIAWHKAGIMKTGSPAFT-IEQVPSATQVLKDRAVEKGVDLKILDVDPRLN--- 295
Query: 913 RGQPLDEDWKSTVQSINISLAIQLAYLWMFRMNKSAELKSVIDKFLAEMRVSSPNETPGG 972
G + D + Q N +LAI LA + +++ P+ PG
Sbjct: 296 -GVKIRPD--AVFQKKNATLAIALAETALKKLD--------------------PSFKPGT 332
Query: 973 QGHLSSCETPGGQGHLSFSETPGGQGHLTGNQSSLLMGPHFEIDPKTYRGIKACVWPGRV 1032
+ P F +G++ VW GR
Sbjct: 333 DS----------------------------------LSPEF------VQGLEQVVWRGRC 352
Query: 1033 QVIRKNNFKYFLDGAHTTDSIELCAKWFLRK--SEAEANPTQSKSSNVIQRILVFNVTGE 1090
+V ++ + LDGAHT DS+++ +WF+ + +A+ P ++L+FN G
Sbjct: 353 EVKEEDQAVWHLDGAHTVDSLKVAGRWFVEECVKKAKGGP----------KVLIFNQQGR 402
Query: 1091 RDPTKLLSPL 1100
+ L L
Sbjct: 403 SEAVDFLDGL 412
|
Catalyzes conversion of folates to polyglutamate derivatives allowing concentration of folate compounds in the cell and the intracellular retention of these cofactors, which are important substrates for most of the folate-dependent enzymes that are involved in one-carbon transfer reactions involved in purine, pyrimidine and amino acid synthesis. Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) (taxid: 367110) EC: 6 EC: . EC: 3 EC: . EC: 2 EC: . EC: 1 EC: 7 |
| >sp|F4K2A1|FPGS1_ARATH Folylpolyglutamate synthase OS=Arabidopsis thaliana GN=FPGS1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 207 bits (526), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 117/283 (41%), Positives = 169/283 (59%), Gaps = 14/283 (4%)
Query: 53 SYVDAIKQLNTLQSNIRTIRESKLRKDPVEMQAVQVDQVVQYLGHLNITLDDIKKLNVIH 112
SY +A+ L++L + R+ + + D E+ V YL L++ +DI K+NVIH
Sbjct: 66 SYEEALAALSSLITK-RSRADKSNKGDRFEL-------VFDYLKLLDLE-EDILKMNVIH 116
Query: 113 ISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTKYFWTVY 172
++GTKGKGSTC + ESI+R++GF TG F+SPHLI+VRER +L+G IS +KF YFW Y
Sbjct: 117 VAGTKGKGSTCTFTESIIRNYGFRTGLFTSPHLIDVRERFRLDGVDISEEKFLGYFWWCY 176
Query: 173 NALHAKRKHAEDMPAYFKFLTVMSFYVFVKEKPDAVIMEVGIGGRYDNTNIIPNTAVVGI 232
N L + MP YF+FL +++F +F E+ DA I+EVG+GG++D TN + V GI
Sbjct: 177 NRLKERTNEEIPMPTYFRFLALLAFKIFAAEEVDAAILEVGLGGKFDATNAVQKPVVCGI 236
Query: 233 TSLGYDHTAVLGNTIEEITMQKAGIMKPNCIAVTSANQRGPCKQILLETSRALNCVLLEA 292
+SLGYDH +LG+T+ +I +KAGI K A T + +LE + V LE
Sbjct: 237 SSLGYDHMEILGDTLGKIAGEKAGIFKLGVPAFTVPQPDEAMR--VLEEKASETEVNLEV 294
Query: 293 PSILNYR-WRGQPLDEDWKSTVQSINISLAIQLAYLWMFRMNK 334
L R GQ L D + Q +N LA+ LA +W+ ++ K
Sbjct: 295 VQPLTARLLSGQKLGLDGEH--QYVNAGLAVSLASIWLQQIGK 335
|
Catalyzes conversion of folates to polyglutamate derivatives allowing concentration of folate compounds in the cell and the intracellular retention of these cofactors, which are important substrates for most of the folate-dependent enzymes that are involved in one-carbon transfer reactions involved in purine, pyrimidine and amino acid synthesis. Essential for organellar and whole-plant folate homeostasis. Required for postembryonic root development. Generates polyglutamylated folate cofactors to support C1 metabolism required for meristem maintenance and cell expansion during postembryonic root development. Arabidopsis thaliana (taxid: 3702) EC: 6 EC: . EC: 3 EC: . EC: 2 EC: . EC: 1 EC: 7 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1255 | ||||||
| 242020144 | 552 | folylpolyglutamate synthase, putative [P | 0.388 | 0.882 | 0.366 | 2e-90 | |
| 395741003 | 585 | PREDICTED: LOW QUALITY PROTEIN: folylpol | 0.411 | 0.882 | 0.352 | 2e-87 | |
| 390344395 | 718 | PREDICTED: folylpolyglutamate synthase, | 0.446 | 0.779 | 0.338 | 8e-87 | |
| 426363117 | 587 | PREDICTED: folylpolyglutamate synthase, | 0.415 | 0.889 | 0.344 | 1e-86 | |
| 74152384 | 587 | unnamed protein product [Mus musculus] | 0.432 | 0.925 | 0.337 | 4e-86 | |
| 410217078 | 587 | folylpolyglutamate synthase [Pan troglod | 0.415 | 0.889 | 0.342 | 6e-86 | |
| 172088163 | 587 | folylpolyglutamate synthase, mitochondri | 0.432 | 0.925 | 0.337 | 6e-86 | |
| 14582587 | 587 | folylpoly-gammaglutamate synthetase prec | 0.420 | 0.899 | 0.336 | 1e-85 | |
| 397503787 | 595 | PREDICTED: folylpolyglutamate synthase, | 0.423 | 0.892 | 0.339 | 2e-85 | |
| 344251573 | 587 | Folylpolyglutamate synthase, mitochondri | 0.424 | 0.908 | 0.336 | 2e-85 |
| >gi|242020144|ref|XP_002430516.1| folylpolyglutamate synthase, putative [Pediculus humanus corporis] gi|212515673|gb|EEB17778.1| folylpolyglutamate synthase, putative [Pediculus humanus corporis] | Back alignment and taxonomy information |
|---|
Score = 341 bits (874), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 220/600 (36%), Positives = 311/600 (51%), Gaps = 113/600 (18%)
Query: 53 SYVDAIKQLNTLQSNIRTIRESKLRKDPVEMQ-AVQVDQVVQYLGHLNITLDDIKKLNVI 111
+Y +AIK+LNTLQ+N + S+ R ++ A +VD VQYL I L++I +L++I
Sbjct: 35 NYENAIKKLNTLQTNASVLELSRQRGKVSHVELASKVDSTVQYLQKTGIKLENINQLSII 94
Query: 112 HISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTKYFWTV 171
H+SGTKGKG+TCA CESILR HG+ TGF+SSPHLI RERI++NG P+ +++F++YF V
Sbjct: 95 HVSGTKGKGTTCALCESILRHHGYRTGFYSSPHLIHARERIRINGMPLGFNQFSEYFEEV 154
Query: 172 YNALHAKRKHAEDMPAYFKFLTVMSFYVFVKEKPDAVIMEVGIGGRYDNTNIIPNTAVVG 231
Y+ + K++H DMPAYFKF+TV++F VF+KEK D I+EVGIGG YD TN I N +VVG
Sbjct: 155 YDQIVEKKEHENDMPAYFKFMTVLAFNVFIKEKVDVAIIEVGIGGEYDCTNFIRNPSVVG 214
Query: 232 ITSLGYDHTAVLGNTIEEITMQKAGIMKPNCIAVTSANQRGPCKQILLETSRALNCVLLE 291
ITSLG DHT++LGN I EI QKAGIMKP A T + ++L E RAL
Sbjct: 215 ITSLGMDHTSILGNNISEIAWQKAGIMKPGATAFTVPQKYPGALEVLKE--RAL------ 266
Query: 292 APSILNYRWRGQPLDEDWKSTVQSINISLAIQLAYLWMFRMNKSAELKSVIDKFLAEMRV 351
+ ++++ G VQ++N SLA+QLA WM R++ S ++ V +K + ++
Sbjct: 267 SRRVIDFIRDG--------DNVQALNSSLALQLANEWM-RLH-SPFVEKVEEKTMQDLSE 316
Query: 352 SSPNETPGGQGHLSSCETPGGQGHLSFSETPGGQGHLTGNQSSLLMGPHFEIDPKTYRGI 411
+ P F++ K G+
Sbjct: 317 AIPT------------------------------------------AKAFQVTKKMIDGL 334
Query: 412 KACVWPGRVQVIRKNNFKYFLDGAHTTDSIELCAKWFLRKSEAEASSSRSVSSCPLDPTQ 471
K C WPGR Q++ + YFLDGAHT +SI+ C+ WF + S+ SS
Sbjct: 335 KDCSWPGRTQILPREKLTYFLDGAHTEESIKHCSNWFKKCSKTLLSS------------- 381
Query: 472 SKSSNVIQRILVFNVTGERDPTKLLSPLLQSNQFEYILVTPNILTNESSPDTQYGGNRTI 531
K NV ++IL+FN TG+RD K L LL +N F+Y + T N++ PD+
Sbjct: 382 DKEDNV-KKILIFNTTGQRDAEKFLK-LLSTNNFQYAIFTTNVIY--PKPDSNNN----- 432
Query: 532 DRFGVKLDSRTAAPNGGHEPGRPNVGQGGGGFQSRSGDNSIRSNANPLSSVDCHNVNDQS 591
N G E R ++ N N + +D N
Sbjct: 433 --------------NIGSEEARKVAETNMMLWKKLVPSN--EDNCTVIIKIDTSR-NTFK 475
Query: 592 NSFHKIATVASALSQRSKVVEFSSVLDTYNFKYGLDPSKEY-HILVTGSLHLVGAFLNVL 650
F +I +V +S D NF + H+LVTGSLHL+G L++L
Sbjct: 476 KDFLRIFSVTPTVS------------DALNFVNNFANENGFCHVLVTGSLHLIGNTLSIL 523
|
Source: Pediculus humanus corporis Species: Pediculus humanus Genus: Pediculus Family: Pediculidae Order: Phthiraptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|395741003|ref|XP_003777505.1| PREDICTED: LOW QUALITY PROTEIN: folylpolyglutamate synthase, mitochondrial [Pongo abelii] | Back alignment and taxonomy information |
|---|
Score = 330 bits (847), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 220/625 (35%), Positives = 309/625 (49%), Gaps = 109/625 (17%)
Query: 53 SYVDAIKQLNTLQSNIRTIRESKL-RKDPVEMQAVQVDQVVQYLGHLNITLDDIKKLNVI 111
S+ DA++ LNTLQ+N + + K R DP Q++ + YL + ++D+ +LN+I
Sbjct: 37 SFQDAVRMLNTLQTNAGYLEQVKRQRGDP----QTQLEAMELYLARSGLQVEDLDRLNII 92
Query: 112 HISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTKYFWTV 171
H++GTKGKGSTCA+ E ILRS+G TGFFSSPHL++VRERI++NG+PIS + FTKYFW +
Sbjct: 93 HVTGTKGKGSTCAFTECILRSYGLKTGFFSSPHLVQVRERIRINGQPISPELFTKYFWHL 152
Query: 172 YNAL-HAKRKHAEDMPAYFKFLTVMSFYVFVKEKPDAVIMEVGIGGRYDNTNIIPNTAVV 230
Y+ L K MP YF+FLT+M+F+VF++EK D ++EVGIGG YD TNII V
Sbjct: 153 YHRLEETKDGSCVSMPPYFRFLTLMAFHVFLQEKVDLAVVEVGIGGAYDCTNIIRKPVVC 212
Query: 231 GITSLGYDHTAVLGNTIEEITMQKAGIMKPNCIAVTSANQRGPCKQILLETSRALNCVLL 290
G++SLG DHT++LG+T+E+I QK GI K A T GP +L + ++ ++C L
Sbjct: 213 GVSSLGIDHTSLLGDTVEKIAWQKGGIFKQGVPAFTVLQPEGPLA-VLRDRAQQISCPLY 271
Query: 291 EAPSILNYRWRGQPLDEDWKSTVQSINISLAIQLAYLWMFRMNKSAELKSVIDKFLAEMR 350
P + G PL + Q N +LA+QLA+ W+ R + E +
Sbjct: 272 LCPMLEALEEGGPPLTLGLEGEHQRSNAALALQLAHCWLQRQDHHGA---------GEPK 322
Query: 351 VSSPNETPGGQGHLSSCETPGGQGHLSFSETPGGQGHLTGNQSSLLMGPHFEIDPKTYRG 410
S P G L + P F+ G
Sbjct: 323 ASRP-----------------------------------GLLWQLPLAPVFQPTSHMRLG 347
Query: 411 IKACVWPGRVQVIRKNNFKYFLDGAHTTDSIELCAKWFLRKSEAEASSSRSVSSCPLDPT 470
++ WPGR QV+R+ ++LDGAHT S++ C +WF +A++ R
Sbjct: 348 LRNTEWPGRTQVLRRGPLTWYLDGAHTASSVQACVRWF-----RQAAAGR---------- 392
Query: 471 QSKSSNVIQRILVFNVTGERDPTKLLSPLLQSNQFEYILVTPNILTNESSPDTQYGGNRT 530
+ S R+L+FN TG+RDP LL LLQ QF+Y + PN LT SS N T
Sbjct: 393 ERPSGGPEVRVLLFNATGDRDPAALLK-LLQPCQFDYAVFCPN-LTEVSSTGNAGERNFT 450
Query: 531 IDR-----------------FGVKLDSRTAAPNGGHEPGRPNVGQGGGGFQSRSGDNSIR 573
DR G LD A+P G P P G G S+
Sbjct: 451 RDRRAWTRSCVRLPGTSQQGTGNHLDEEQASPTSGSAPS-PEPG----------GSTSLL 499
Query: 574 SNANPLSSVDCHNVNDQSNSFHKIATVASALSQ-RSKVVEFSSV---LDTYNFKYG---- 625
+P H + S F I+ +SQ R + + S L T+ +
Sbjct: 500 LAPHPP-----HTCSASSLVFSCISHALQWISQGRDPIFQSPSPPKGLLTHPVAHSGAGV 554
Query: 626 LDPSKEYHILVTGSLHLVGAFLNVL 650
L + H+LVTGSLHLVG L +L
Sbjct: 555 LREAAAIHVLVTGSLHLVGGVLKLL 579
|
Source: Pongo abelii Species: Pongo abelii Genus: Pongo Family: Hominidae Order: Primates Class: Mammalia Phylum: Chordata Superkingdom: Eukaryota |
| >gi|390344395|ref|XP_796835.3| PREDICTED: folylpolyglutamate synthase, mitochondrial-like [Strongylocentrotus purpuratus] | Back alignment and taxonomy information |
|---|
Score = 328 bits (842), Expect = 8e-87, Method: Compositional matrix adjust.
Identities = 220/649 (33%), Positives = 332/649 (51%), Gaps = 89/649 (13%)
Query: 54 YVDAIKQLNTLQSNIRTIRESKLRKDPVEMQAVQ-VDQVVQYLGHLNITLDDIKKLNVIH 112
Y +AI++LNTLQSN +T+ E + +D M A + + V+ + I+L+ + +L+ IH
Sbjct: 118 YQEAIRKLNTLQSNAKTLDEIRKNRD---MGAYKNIPDVIDGATRVGISLERLDELSCIH 174
Query: 113 ISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTKYFWTVY 172
++GTKGKGS CA+ ESILR+ GF TGF+SSPHL+EVRERI++NG+P+ + F K F+TVY
Sbjct: 175 VAGTKGKGSVCAFTESILRASGFKTGFYSSPHLVEVRERIRINGQPLPKEDFAKNFFTVY 234
Query: 173 NALHA-KRKHAEDMPAYFKFLTVMSFYVFVKEKPDAVIMEVGIGGRYDNTNIIPNTAVVG 231
N L A K + MPAYF+FLT+++F+ F++EK D IMEVGIGG YD TNII VVG
Sbjct: 235 NRLEATKEDYDGKMPAYFRFLTLLAFHTFLEEKVDVAIMEVGIGGEYDCTNIIRKPVVVG 294
Query: 232 ITSLGYDHTAVLGNTIEEITMQKAGIMKPNCIAVTSANQRGPCKQILLETSRALNCVLLE 291
ITSLG DH VLGNTI++I KAGI+K A T Q++ E +R L
Sbjct: 295 ITSLGIDHIGVLGNTIDKIAWHKAGIIKSGRPAFTVPQPENSI-QVIKERAREKEASLQV 353
Query: 292 APSILNYRWRGQPLDEDWKSTVQSINISLAIQLAYLWMFRMNKSAELKSVIDKFLAEMRV 351
PS+++Y + G + Q +N +LA+QLA W V ++ ++
Sbjct: 354 VPSLMSYGFHGDDVSLGLAGMHQYMNATLALQLAKTW------------VTEERPGKIDF 401
Query: 352 SSPNETPGGQGHLSSCETPGGQGHLSFSETPGGQGHLTGNQSSLLMGPHFEIDPKTYRGI 411
++ P S + P L ++ G +T Q F + + +G+
Sbjct: 402 EDDDDEP-------SSKHPRIADTLPVTDEVLNTGDVTEAQP-------FTVPKQFIKGL 447
Query: 412 KACVWPGRVQVIRKNNFKYFLDGAHTTDSIELCAKWFLRKSEAEASSSRSVSSCPLDPTQ 471
+C WPGR Q+IR+ N Y+LDGAHT SI+ C KWF R++E +A
Sbjct: 448 TSCYWPGRNQIIRRKNITYYLDGAHTPRSIKACCKWFNRRAEMDARDLE----------- 496
Query: 472 SKSSNVIQRILVFNVTGERDPTKLLSPLLQSNQFEYILVTPNIL---TNESSPD---TQY 525
+ ++L+FN TGERD LL L++S F ++ PNI+ ++E+S D
Sbjct: 497 ----GPVAKVLIFNTTGERDEYSLLPKLVESG-FHGVVFCPNIISLYSHEASADTTNHTT 551
Query: 526 GGNRTIDRFGVKLDS-------------RTAAPNGGH-EPGRPNVGQGGGGFQSRSGDNS 571
+ + R L++ + P H + R V Q G ++ +
Sbjct: 552 TTEKQMKRCEKNLEAFQHLLKQLQRDVYSSELPTAAHGDYSRIEVAQASGSLHQQTVQYT 611
Query: 572 IRSNANPLSSVDCHNVNDQSNSFHKIATVASALSQRSKVVEFSSVLDTYNFKYGL----- 626
+ + SS C+ D++ + + T + +K+V+ SS+ D +
Sbjct: 612 PTNVVDQPSST-CNQSGDRTLTRNLDGTGSDQFVD-AKLVKLSSMTDALQWAACCKDSNL 669
Query: 627 ------DPSKEYH--------ILVTGSLHLVGAFLNVLITPHASRSNKE 661
DP+ H +L+TGSLHLVG + +L ASR + E
Sbjct: 670 SSPSLHDPTPSNHATSANHIQVLITGSLHLVGGVIGILDPELASRPDPE 718
|
Source: Strongylocentrotus purpuratus Species: Strongylocentrotus purpuratus Genus: Strongylocentrotus Family: Strongylocentrotidae Order: Echinoida Class: Echinoidea Phylum: Echinodermata Superkingdom: Eukaryota |
| >gi|426363117|ref|XP_004048692.1| PREDICTED: folylpolyglutamate synthase, mitochondrial isoform 1 [Gorilla gorilla gorilla] | Back alignment and taxonomy information |
|---|
Score = 328 bits (840), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 215/624 (34%), Positives = 310/624 (49%), Gaps = 102/624 (16%)
Query: 48 KEIPQSYVDAIKQLNTLQSNIRTIRESKL-RKDPVEMQAVQVDQVVQYLGHLNITLDDIK 106
+E Y DA++ LNTLQ+N + + K R DP Q++ + YL + ++D+
Sbjct: 39 QEPSMEYQDAVRMLNTLQTNAGYLEQVKRQRGDP----QTQLEAMELYLARSGLQVEDLD 94
Query: 107 KLNVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTK 166
+LN+IH++GTKGKGSTCA+ E ILRS+G TGFFSSPHL++VRERI++NG+PIS + FTK
Sbjct: 95 RLNIIHVTGTKGKGSTCAFTECILRSYGLKTGFFSSPHLVQVRERIRINGQPISPELFTK 154
Query: 167 YFWTVYNAL-HAKRKHAEDMPAYFKFLTVMSFYVFVKEKPDAVIMEVGIGGRYDNTNIIP 225
YFW +Y+ L K MP YF+FLT+M+F+VF++EK D ++EVGIGG YD TNII
Sbjct: 155 YFWRLYHRLEETKDGSCVSMPPYFRFLTLMAFHVFLQEKVDLAVVEVGIGGAYDCTNIIR 214
Query: 226 NTAVVGITSLGYDHTAVLGNTIEEITMQKAGIMKPNCIAVTSANQRGPCKQILLETSRAL 285
V G++SLG DHT++LG+T+E+I QK GI K A T GP +L + ++ +
Sbjct: 215 KPVVCGVSSLGIDHTSLLGDTVEKIAWQKGGIFKQGVPAFTVLQPEGPLA-VLRDRAQQI 273
Query: 286 NCVLLEAPSILNYRWRGQPLDEDWKSTVQSINISLAIQLAYLWMFRMNKSAELKSVIDKF 345
+C L P + G PL + Q N +LA+QLA+ W+ R ++
Sbjct: 274 SCPLYLCPMLEALEEGGPPLTLGLEGEHQRSNAALALQLAHCWLQRQDRHGA-------- 325
Query: 346 LAEMRVSSPNETPGGQGHLSSCETPGGQGHLSFSETPGGQGHLTGNQSSLLMGPHFEIDP 405
E + S P G L + P F+
Sbjct: 326 -GEPKASRP-----------------------------------GLLWQLPLAPVFQPTS 349
Query: 406 KTYRGIKACVWPGRVQVIRKNNFKYFLDGAHTTDSIELCAKWFLRKSEAEASSSRSVSSC 465
G++ WPGR QV+R+ ++LDGAHT S++ C +WF +
Sbjct: 350 HMRLGLRNTEWPGRTQVLRRGPLTWYLDGAHTASSVQACVRWFRQA-------------- 395
Query: 466 PLDPTQSKSSNVIQRILVFNVTGERDPTKLLSPLLQSNQFEYILVTPNILTNESSPDT-Q 524
L + S R+L+FN TG+RDP LL LLQ QF+Y + PN+ S+ + Q
Sbjct: 396 -LQGRERPSGGPEVRVLLFNATGDRDPAALLK-LLQPCQFDYAVFCPNLTEVSSTGNADQ 453
Query: 525 YGGNRTIDRFGVK----------LDSRTAAPNGGHEPGRPNVGQGGGGFQSRSGDNSIRS 574
T+D+ ++ LD A+P+ P P G G S+
Sbjct: 454 QNFTVTLDQVLLRCLEHQQHWNHLDEEQASPDLWSAPS-PEPG----------GSTSLLL 502
Query: 575 NANPLSSVDCHNVNDQSNSFHKIATVASALSQ-RSKVVEFSSV---LDTYNFKYG----L 626
+P H + S F I+ +SQ R + + S L T+ Y L
Sbjct: 503 APHP-----PHTCSASSLVFSCISHALQWISQGRDPIFQPPSPPKGLLTHPVAYSGASIL 557
Query: 627 DPSKEYHILVTGSLHLVGAFLNVL 650
+ H+LVTGSLHLVG L +L
Sbjct: 558 REAAAIHVLVTGSLHLVGGVLKLL 581
|
Source: Gorilla gorilla gorilla Species: Gorilla gorilla Genus: Gorilla Family: Hominidae Order: Primates Class: Mammalia Phylum: Chordata Superkingdom: Eukaryota |
| >gi|74152384|dbj|BAE33941.1| unnamed protein product [Mus musculus] | Back alignment and taxonomy information |
|---|
Score = 326 bits (836), Expect = 4e-86, Method: Compositional matrix adjust.
Identities = 213/632 (33%), Positives = 319/632 (50%), Gaps = 89/632 (14%)
Query: 37 GAVTPHASR-------SNKEIPQSYVDAIKQLNTLQSNIRTIRESKL-RKDPVEMQAVQV 88
GA T A+R + +E Y DA++ LNTLQ+N + + K R DP Q+
Sbjct: 21 GATTEGAARRGMSAWPAPQEPGMEYQDAVRTLNTLQTNASYLEQVKRQRSDP----QAQL 76
Query: 89 DQVVQYLGHLNITLDDIKKLNVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEV 148
+ + YL + ++D+ +LN+IH++GTKGKGSTCA+ E ILR++G TGFFSSPH+++V
Sbjct: 77 EAMEMYLARSGLQVEDLNRLNIIHVTGTKGKGSTCAFTERILRNYGLKTGFFSSPHMVQV 136
Query: 149 RERIKLNGEPISYDKFTKYFWTVYNALHAKRKHAE-DMPAYFKFLTVMSFYVFVKEKPDA 207
RERI++NG+PIS + FTK+FW +YN L + + MP+YF+FLT+M+F+VF++EK D
Sbjct: 137 RERIRINGKPISPELFTKHFWCLYNQLEEFKDDSHVSMPSYFRFLTLMAFHVFLQEKVDL 196
Query: 208 VIMEVGIGGRYDNTNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIMKPNCIAVTS 267
++EVGIGG +D TNII V G++SLG DHT++LG+T+E+I QK GI KP A T
Sbjct: 197 AVVEVGIGGAFDCTNIIRKPVVCGVSSLGIDHTSLLGDTVEKIAWQKGGIFKPGVPAFTV 256
Query: 268 ANQRGPCKQILLETSRALNCVLLEAPSILNYRWRGQPLDEDWKSTVQSINISLAIQLAYL 327
GP +L + ++ + C L P + G PL + Q N +LA+QLA+
Sbjct: 257 VQPEGPLA-VLRDRAQQIGCPLYLCPPLEALEEVGLPLSLGLEGAHQRSNAALALQLAHC 315
Query: 328 WMFRMNKSAELKSVIDKFLAEMRVSSPNETPGGQGHLSSCETPGGQGHLSFSETPGGQGH 387
W+ R + + + E++VS P+
Sbjct: 316 WLERQDH---------QDIQELKVSRPS-------------------------------- 334
Query: 388 LTGNQSSLLMGPHFEIDPKTYRGIKACVWPGRVQVIRKNNFKYFLDGAHTTDSIELCAKW 447
+ L + P F P RG++ VWPGR Q++++ ++LDGAHTT S++ C W
Sbjct: 335 ---IRWQLPLAPVFRPTPHMRRGLRDTVWPGRTQILQRGPLTWYLDGAHTTSSVQACVHW 391
Query: 448 FLRKSEAEASSSRSVSSCPLDPTQSKSSNVIQRILVFNVTGERDPTKLLSPLLQSNQFEY 507
+ R+S L+ ++ IL+FN TG+RD LL LLQ QF+Y
Sbjct: 392 Y-RQS--------------LERSKRTDGGSEVHILLFNSTGDRDSAALLK-LLQPCQFDY 435
Query: 508 ILVTPNILTNESSPDT-QYGGNRTIDRFGVKLDSRTAAPNGGHEPGRPNVGQGGGGFQSR 566
+ PN+ S + Q T+D+ ++ NG E Q S
Sbjct: 436 AVFCPNVTEVSSIGNADQQNFTVTLDQVMLRCLQHQQHWNGLAE------KQASSNLWSS 489
Query: 567 SGDNSIRSNANPLSSVDCHNVNDQSNSFHKIATVASALSQ-RSKVVEFSS----VLDTYN 621
G + + L+ S F I+ +SQ R + + S +L+
Sbjct: 490 CGPDPAGPGSLLLAPHPPQPTRTSSLVFSCISHALLWISQGRDPIFQPQSLPRNLLNHPT 549
Query: 622 FKYG---LDPSKEYHILVTGSLHLVGAFLNVL 650
G L + H+LVTGSLHLVG L +L
Sbjct: 550 ANSGASILREAAAIHVLVTGSLHLVGGVLKLL 581
|
Source: Mus musculus Species: Mus musculus Genus: Mus Family: Muridae Order: Rodentia Class: Mammalia Phylum: Chordata Superkingdom: Eukaryota |
| >gi|410217078|gb|JAA05758.1| folylpolyglutamate synthase [Pan troglodytes] | Back alignment and taxonomy information |
|---|
Score = 326 bits (835), Expect = 6e-86, Method: Compositional matrix adjust.
Identities = 214/624 (34%), Positives = 310/624 (49%), Gaps = 102/624 (16%)
Query: 48 KEIPQSYVDAIKQLNTLQSNIRTIRESKL-RKDPVEMQAVQVDQVVQYLGHLNITLDDIK 106
+E Y DA++ LNTLQ+N + + K R DP Q++ + YL + ++D+
Sbjct: 39 QEPSMEYQDAVRMLNTLQTNAGYLEQVKRQRGDP----QTQLEAMELYLARSGLQVEDLD 94
Query: 107 KLNVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTK 166
+LN+IH++GTKGKGSTCA+ E ILRS+G TGFFSSPHL++VRERI++NG+PIS + FTK
Sbjct: 95 RLNIIHVTGTKGKGSTCAFTECILRSYGLKTGFFSSPHLVQVRERIRINGQPISPELFTK 154
Query: 167 YFWTVYNAL-HAKRKHAEDMPAYFKFLTVMSFYVFVKEKPDAVIMEVGIGGRYDNTNIIP 225
YFW +Y+ L K MP YF+FLT+M+F+VF++EK D ++EVGIGG YD TNII
Sbjct: 155 YFWRLYHRLEETKDGSCVSMPPYFRFLTLMAFHVFLQEKVDLAVVEVGIGGAYDCTNIIR 214
Query: 226 NTAVVGITSLGYDHTAVLGNTIEEITMQKAGIMKPNCIAVTSANQRGPCKQILLETSRAL 285
V G++SLG DHT++LG+T+E+I QK GI K A T GP +L + ++ +
Sbjct: 215 KPVVCGVSSLGIDHTSLLGDTVEKIAWQKGGIFKQGVPAFTVLQPEGPLA-VLRDRAQQI 273
Query: 286 NCVLLEAPSILNYRWRGQPLDEDWKSTVQSINISLAIQLAYLWMFRMNKSAELKSVIDKF 345
+C L P + G PL + Q N +LA+QLA+ W+ R ++
Sbjct: 274 SCPLYLCPMLEALEEGGPPLTLGLEGEHQRSNAALALQLAHCWLQRQDRHGA-------- 325
Query: 346 LAEMRVSSPNETPGGQGHLSSCETPGGQGHLSFSETPGGQGHLTGNQSSLLMGPHFEIDP 405
E + S P G L + P F+
Sbjct: 326 -GEPKASRP-----------------------------------GLLWQLPLAPVFQPTS 349
Query: 406 KTYRGIKACVWPGRVQVIRKNNFKYFLDGAHTTDSIELCAKWFLRKSEAEASSSRSVSSC 465
G++ WPGR QV+R+ ++LDGAHT S++ C +WF +
Sbjct: 350 HMRLGLRNTEWPGRTQVLRRGPLTWYLDGAHTASSVQACVRWFRQA-------------- 395
Query: 466 PLDPTQSKSSNVIQRILVFNVTGERDPTKLLSPLLQSNQFEYILVTPNILTNESSPDT-Q 524
L + S R+L+FN TG+RDP LL LLQ QF+Y + PN+ S+ + Q
Sbjct: 396 -LQGRERPSGGPEVRVLLFNATGDRDPAALLK-LLQPCQFDYAVFCPNLTEVSSTGNADQ 453
Query: 525 YGGNRTIDRFGVK----------LDSRTAAPNGGHEPGRPNVGQGGGGFQSRSGDNSIRS 574
T+D+ ++ LD A+P+ P P G G S+
Sbjct: 454 QNFTVTLDQVLLRCLEHQQHWNHLDEEQASPDLWSAPS-PEPG----------GSTSLLL 502
Query: 575 NANPLSSVDCHNVNDQSNSFHKIATVASALSQ-RSKVVEFSSV---LDTYNFKYG----L 626
+P H + S F I+ +SQ R + + S L T+ + L
Sbjct: 503 APHP-----PHTCSASSLVFSCISHALQWISQGRDPIFQPPSPPKGLLTHPVAHSGASIL 557
Query: 627 DPSKEYHILVTGSLHLVGAFLNVL 650
+ H+LVTGSLHLVG L +L
Sbjct: 558 REAAAIHVLVTGSLHLVGGVLKLL 581
|
Source: Pan troglodytes Species: Pan troglodytes Genus: Pan Family: Hominidae Order: Primates Class: Mammalia Phylum: Chordata Superkingdom: Eukaryota |
| >gi|172088163|ref|NP_034366.2| folylpolyglutamate synthase, mitochondrial precursor [Mus musculus] gi|341941098|sp|P48760.3|FOLC_MOUSE RecName: Full=Folylpolyglutamate synthase, mitochondrial; AltName: Full=Folylpoly-gamma-glutamate synthetase; Short=FPGS; AltName: Full=Tetrahydrofolylpolyglutamate synthase; Short=Tetrahydrofolate synthase; Flags: Precursor gi|148676616|gb|EDL08563.1| folylpolyglutamyl synthetase, isoform CRA_a [Mus musculus] | Back alignment and taxonomy information |
|---|
Score = 326 bits (835), Expect = 6e-86, Method: Compositional matrix adjust.
Identities = 213/632 (33%), Positives = 319/632 (50%), Gaps = 89/632 (14%)
Query: 37 GAVTPHASR-------SNKEIPQSYVDAIKQLNTLQSNIRTIRESKL-RKDPVEMQAVQV 88
GA T A+R + +E Y DA++ LNTLQ+N + + K R DP Q+
Sbjct: 21 GATTEGAARRGMSAWPAPQEPGMEYQDAVRTLNTLQTNASYLEQVKRQRSDP----QAQL 76
Query: 89 DQVVQYLGHLNITLDDIKKLNVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEV 148
+ + YL + ++D+ +LN+IH++GTKGKGSTCA+ E ILR++G TGFFSSPH+++V
Sbjct: 77 EAMEMYLARSGLQVEDLNRLNIIHVTGTKGKGSTCAFTERILRNYGLKTGFFSSPHMVQV 136
Query: 149 RERIKLNGEPISYDKFTKYFWTVYNALHAKRKHAE-DMPAYFKFLTVMSFYVFVKEKPDA 207
RERI++NG+PIS + FTK+FW +YN L + + MP+YF+FLT+M+F+VF++EK D
Sbjct: 137 RERIRINGKPISPELFTKHFWCLYNQLEEFKDDSHVSMPSYFRFLTLMAFHVFLQEKVDL 196
Query: 208 VIMEVGIGGRYDNTNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIMKPNCIAVTS 267
++EVGIGG +D TNII V G++SLG DHT++LG+T+E+I QK GI KP A T
Sbjct: 197 AVVEVGIGGAFDCTNIIRKPVVCGVSSLGIDHTSLLGDTVEKIAWQKGGIFKPGVPAFTV 256
Query: 268 ANQRGPCKQILLETSRALNCVLLEAPSILNYRWRGQPLDEDWKSTVQSINISLAIQLAYL 327
GP +L + ++ + C L P + G PL + Q N +LA+QLA+
Sbjct: 257 VQPEGPLA-VLRDRAQQIGCPLYLCPPLEALEEVGLPLSLGLEGAHQRSNAALALQLAHC 315
Query: 328 WMFRMNKSAELKSVIDKFLAEMRVSSPNETPGGQGHLSSCETPGGQGHLSFSETPGGQGH 387
W+ R + + + E++VS P+
Sbjct: 316 WLERQDH---------QDIQELKVSRPS-------------------------------- 334
Query: 388 LTGNQSSLLMGPHFEIDPKTYRGIKACVWPGRVQVIRKNNFKYFLDGAHTTDSIELCAKW 447
+ L + P F P RG++ VWPGR Q++++ ++LDGAHTT S++ C W
Sbjct: 335 ---IRWQLPLAPVFRPTPHMRRGLRDTVWPGRTQILQRGPLTWYLDGAHTTSSVQACVHW 391
Query: 448 FLRKSEAEASSSRSVSSCPLDPTQSKSSNVIQRILVFNVTGERDPTKLLSPLLQSNQFEY 507
+ R+S L+ ++ IL+FN TG+RD LL LLQ QF+Y
Sbjct: 392 Y-RQS--------------LERSKRTDGGSEVHILLFNSTGDRDSAALLK-LLQPCQFDY 435
Query: 508 ILVTPNILTNESSPDT-QYGGNRTIDRFGVKLDSRTAAPNGGHEPGRPNVGQGGGGFQSR 566
+ PN+ S + Q T+D+ ++ NG E Q S
Sbjct: 436 AVFCPNVTEVSSIGNADQQNFTVTLDQVLLRCLQHQQHWNGLAE------KQASSNLWSS 489
Query: 567 SGDNSIRSNANPLSSVDCHNVNDQSNSFHKIATVASALSQ-RSKVVEFSS----VLDTYN 621
G + + L+ S F I+ +SQ R + + S +L+
Sbjct: 490 CGPDPAGPGSLLLAPHPPQPTRTSSLVFSCISHALLWISQGRDPIFQPQSLPRNLLNHPT 549
Query: 622 FKYG---LDPSKEYHILVTGSLHLVGAFLNVL 650
G L + H+LVTGSLHLVG L +L
Sbjct: 550 ANSGASILREAAAIHVLVTGSLHLVGGVLKLL 581
|
Source: Mus musculus Species: Mus musculus Genus: Mus Family: Muridae Order: Rodentia Class: Mammalia Phylum: Chordata Superkingdom: Eukaryota |
| >gi|14582587|gb|AAK69546.1|AF283647_1 folylpoly-gammaglutamate synthetase precursor [Cricetulus griseus] | Back alignment and taxonomy information |
|---|
Score = 325 bits (833), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 218/647 (33%), Positives = 325/647 (50%), Gaps = 119/647 (18%)
Query: 37 GAVTPHASR-------SNKEIPQSYVDAIKQLNTLQSNIRTIRESKL-RKDP-VEMQAVQ 87
GA T A+R + +E Y DA++ LNTLQ+N + + K R DP +++A++
Sbjct: 21 GATTEGAARRWLSAWPAPQEPGMEYQDAVRMLNTLQTNASYLEQVKRQRSDPQAQLEAME 80
Query: 88 VDQVVQYLGHLNITLDDIKKLNVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIE 147
V YL + ++D+ +LN+IH++GTKGKGSTCA+ E ILRS+G TGFFSSPHL++
Sbjct: 81 V-----YLARSGLQVEDLNQLNIIHVTGTKGKGSTCAFTERILRSYGLKTGFFSSPHLVQ 135
Query: 148 VRERIKLNGEPISYDKFTKYFWTVYNALHAKRKHAE-DMPAYFKFLTVMSFYVFVKEKPD 206
VRERI++NG+PIS + FTK+FW +Y+ L + + MPAYF+FLT+M+F+VF++EK D
Sbjct: 136 VRERIRINGKPISPELFTKHFWRLYHQLEEFKDDSHVSMPAYFRFLTLMAFHVFLQEKVD 195
Query: 207 AVIMEVGIGGRYDNTNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIMKPNCIAVT 266
++EVGIGG YD TNII V G++SLG DHT++LG+T+E+I QK GI KP A T
Sbjct: 196 LAVVEVGIGGAYDCTNIIRKPVVCGVSSLGMDHTSLLGDTVEKIAWQKGGIFKPGVPAFT 255
Query: 267 SANQRGPCKQILLETSRALNCVLLEAPSILNYRWRGQPLDEDWKSTVQSINISLAIQLAY 326
GP +L + ++ +C L P + G PL + Q N +LA+QLA+
Sbjct: 256 VLQPEGPLA-VLRDRAQQTSCPLYLCPPLEALEDGGLPLTLGLEGEHQRSNAALALQLAH 314
Query: 327 LWMFRMNKSAELKSVIDKFLAEMRVSSPNETPGGQGHLSSCETPGGQGHLSFSETPGGQG 386
W+ + + + + E++VS P+
Sbjct: 315 CWLEQQDH---------QDIRELKVSRPS------------------------------- 334
Query: 387 HLTGNQSSLLMGPHFEIDPKTYRGIKACVWPGRVQVIRKNNFKYFLDGAHTTDSIELCAK 446
+ L + P F G++ WPGR QV+R+ ++LDGAHTT S++ C +
Sbjct: 335 ----MRWQLPLAPVFHPTSHMRHGLRDTEWPGRTQVLRRGPLTWYLDGAHTTSSVQACVR 390
Query: 447 WFLRKSEAEASSSRSVSSCPLDPTQSKSSNVIQRILVFNVTGERDPTKLLSPLLQSNQFE 506
W+ + L ++ S +L+FN TG+RD LL LLQ QF+
Sbjct: 391 WYCQS---------------LQRSKHPSGGPEVYVLLFNSTGDRDSAALLK-LLQPCQFD 434
Query: 507 YILVTPNILTNESSPDT-QYGGNRTIDRFGVK----------LDSRTAAPN----GGHEP 551
Y + PN+ S+ + Q T+D+ ++ L + A+P+ EP
Sbjct: 435 YAVFCPNLTEVSSTENADQQNFTVTLDQVLLRCLQHQQHWSCLSEKQASPDFLSSPSPEP 494
Query: 552 GRPNVGQGGGGFQSRSGDNSIRSNANPLSSVDCHNVNDQSNSFHKIATVASALSQ-RSKV 610
GRP S++ P H+ S F I+ +SQ R +
Sbjct: 495 GRP---------------GSLQPALRP-----PHSTGTNSLVFSCISHALQWISQGRDPI 534
Query: 611 VEFS----SVLDTYNFKYG---LDPSKEYHILVTGSLHLVGAFLNVL 650
E S+L G L + H+LVTGSLHLVG L +L
Sbjct: 535 FEAPSPPRSLLSHPTASSGASILREAGAIHVLVTGSLHLVGGVLKLL 581
|
Source: Cricetulus griseus Species: Cricetulus griseus Genus: Cricetulus Family: Cricetidae Order: Rodentia Class: Mammalia Phylum: Chordata Superkingdom: Eukaryota |
| >gi|397503787|ref|XP_003822500.1| PREDICTED: folylpolyglutamate synthase, mitochondrial [Pan paniscus] | Back alignment and taxonomy information |
|---|
Score = 324 bits (831), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 212/624 (33%), Positives = 308/624 (49%), Gaps = 93/624 (14%)
Query: 48 KEIPQSYVDAIKQLNTLQSNIRTIRESKL-RKDPVEMQAVQVDQVVQYLGHLNITLDDIK 106
+E Y DA++ LNTLQ+N + + K R DP Q++ + YL + ++D+
Sbjct: 38 QEPSMEYQDAVRMLNTLQTNAGYLEQVKRQRGDP----QTQLEAMELYLARSGLQVEDLD 93
Query: 107 KLNVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTK 166
+LN+IH++GTKGKGSTCA+ E ILRS+G TGFFSSPHL++VRERI++NG+PIS + FTK
Sbjct: 94 RLNIIHVTGTKGKGSTCAFTECILRSYGLKTGFFSSPHLVQVRERIRINGQPISPELFTK 153
Query: 167 YFWTVYNAL-HAKRKHAEDMPAYFKFLTVMSFYVFVKEKPDAVIMEVGIGGRYDNTNIIP 225
YFW +Y+ L K MP YF+FLT+M+F+VF++EK D ++EVGIGG YD TNII
Sbjct: 154 YFWRLYHRLEETKDGSCVSMPPYFRFLTLMAFHVFLQEKVDLAVVEVGIGGAYDCTNIIR 213
Query: 226 NTAVVGITSLGYDHTAVLGNTIEEITMQKAGIMKPNCIAVTSANQRGPCKQILLETSRAL 285
V G++SLG DHT++LG+T+E+I QK GI K A T GP +L + ++ +
Sbjct: 214 KPVVCGVSSLGIDHTSLLGDTVEKIAWQKGGIFKQGVPAFTVLQPEGPLA-VLRDRAQQI 272
Query: 286 NCVLLEAPSILNYRWRGQPLDEDWKSTVQSINISLAIQLAYLWMFRMNKSAELKSVIDKF 345
+C L P + G PL + Q N +LA+QLA+ W+ R ++
Sbjct: 273 SCPLYLCPMLEALEEGGPPLTLGLEGEHQRSNAALALQLAHCWLQRQDRHGA-------- 324
Query: 346 LAEMRVSSPNETPGGQGHLSSCETPGGQGHLSFSETPGGQGHLTGNQSSLLMGPHFEIDP 405
E + S P G L + P F+
Sbjct: 325 -GEPKASRP-----------------------------------GLLWQLPLAPVFQPTS 348
Query: 406 KTYRGIKACVWPGRVQVIRKNNFKYFLDGAHTTDSIELCAKWFLRKSEAEASSSRSVSSC 465
G++ WPGR QV+R+ ++LDGAHT S++ C +WF + +
Sbjct: 349 HMRLGLRNTEWPGRTQVLRRGPLTWYLDGAHTASSVQACVRWFRQALQGRXXXXXXXGE- 407
Query: 466 PLDPTQSKSSNVIQRILVFNVTGERDPTKLLSPLLQSNQFEYILVTPNILTNESSPDT-Q 524
R+L+FN TG+RDP LL LLQ QF+Y + PN+ S+ + Q
Sbjct: 408 -----GRGWGGPEVRVLLFNATGDRDPAALLK-LLQPCQFDYAVFCPNLTEVSSTGNADQ 461
Query: 525 YGGNRTIDRFGVK----------LDSRTAAPNGGHEPGRPNVGQGGGGFQSRSGDNSIRS 574
T+D+ ++ LD A+P+ P P G G S+
Sbjct: 462 QNFTVTLDQVLLRCLEHQQHWNHLDEEQASPDLWSAPS-PEPG----------GSTSLLL 510
Query: 575 NANPLSSVDCHNVNDQSNSFHKIATVASALSQ-RSKVVEFSSV---LDTYNFKYG----L 626
+P H + S F I+ +SQ R + + S L T+ + L
Sbjct: 511 APHP-----PHTCSASSLVFSCISHALQWISQGRDPIFQPPSPPKGLLTHPVAHSGASIL 565
Query: 627 DPSKEYHILVTGSLHLVGAFLNVL 650
+ H+LVTGSLHLVG L +L
Sbjct: 566 REAAAIHVLVTGSLHLVGGVLKLL 589
|
Source: Pan paniscus Species: Pan paniscus Genus: Pan Family: Hominidae Order: Primates Class: Mammalia Phylum: Chordata Superkingdom: Eukaryota |
| >gi|344251573|gb|EGW07677.1| Folylpolyglutamate synthase, mitochondrial [Cricetulus griseus] | Back alignment and taxonomy information |
|---|
Score = 324 bits (830), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 216/642 (33%), Positives = 323/642 (50%), Gaps = 109/642 (16%)
Query: 37 GAVTPHASR-------SNKEIPQSYVDAIKQLNTLQSNIRTIRESKL-RKDP-VEMQAVQ 87
GA T A+R + +E Y DA++ LNTLQ+N + + K R DP +++A++
Sbjct: 21 GATTEGAARRWLSAWPAPQEPGMEYQDAVRMLNTLQTNASYLEQVKRQRSDPQAQLEAME 80
Query: 88 VDQVVQYLGHLNITLDDIKKLNVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIE 147
V YL + ++D+ +LN+IH++GTKGKGSTCA+ E ILRS+G TGFFSSPHL++
Sbjct: 81 V-----YLARSGLQVEDLNQLNIIHVTGTKGKGSTCAFTERILRSYGLKTGFFSSPHLVQ 135
Query: 148 VRERIKLNGEPISYDKFTKYFWTVYNALHAKRKHAE-DMPAYFKFLTVMSFYVFVKEKPD 206
VRERI++NG+PIS + FTK+FW +Y+ L + + MPAYF+FLT+M+F+VF++EK D
Sbjct: 136 VRERIRINGKPISPELFTKHFWRLYHQLEEFKDDSHVAMPAYFRFLTLMAFHVFLQEKVD 195
Query: 207 AVIMEVGIGGRYDNTNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIMKPNCIAVT 266
++EVGIGG YD TNII V G++SLG DHT++LG+T+E+I QK GI KP A T
Sbjct: 196 LAVVEVGIGGAYDCTNIIRKPVVCGVSSLGMDHTSLLGDTVEKIAWQKGGIFKPGVPAFT 255
Query: 267 SANQRGPCKQILLETSRALNCVLLEAPSILNYRWRGQPLDEDWKSTVQSINISLAIQLAY 326
GP +L + ++ +C L P + G PL + Q N +LA+QLA+
Sbjct: 256 VLQPEGPLA-VLRDRAQQTSCPLYLCPPLEALEDGGLPLTLGLEGEHQRSNAALALQLAH 314
Query: 327 LWMFRMNKSAELKSVIDKFLAEMRVSSPNETPGGQGHLSSCETPGGQGHLSFSETPGGQG 386
W+ + + + + E++VS P+
Sbjct: 315 CWLEQQDH---------QDIRELKVSRPS------------------------------- 334
Query: 387 HLTGNQSSLLMGPHFEIDPKTYRGIKACVWPGRVQVIRKNNFKYFLDGAHTTDSIELCAK 446
+ L + P F G++ WPGR QV+R+ ++LDGAHTT S++ C +
Sbjct: 335 ----MRWQLPLAPVFHPTSHMRHGLRDTEWPGRTQVLRRGPLTWYLDGAHTTSSVQACVR 390
Query: 447 WFLRKSEAEASSSRSVSSCPLDPTQSKSSNVIQRILVFNVTGERDPTKLLSPLLQSNQFE 506
W+ + L ++ S +L+FN TG+RD LL LLQ QF+
Sbjct: 391 WYCQS---------------LQRSKHPSGGPEVYVLLFNSTGDRDSAALLK-LLQPCQFD 434
Query: 507 YILVTPNILTNESSPDT-QYGGNRTIDRFGVK----------LDSRTAAPN----GGHEP 551
Y + PN+ S+ + Q T+D+ ++ L + A+P+ EP
Sbjct: 435 YAVFCPNLTEVSSTENADQQNFTVTLDQVLLRCLQHQQHWSCLSEKQASPDFLSSPSPEP 494
Query: 552 GRPNVGQGGGGFQSRSGDNSIRSNANPLSSVDCHNVNDQSNSFHKIATVAS---ALSQRS 608
GRP Q +G NS+ + S H + S I S +L
Sbjct: 495 GRPGSLQPALRPPHSTGTNSL------VFSCISHALQWISQGRDPIFQAPSPPRSLLSHP 548
Query: 609 KVVEFSSVLDTYNFKYGLDPSKEYHILVTGSLHLVGAFLNVL 650
+S+L + H+LVTGSLHLVG L +L
Sbjct: 549 TASSGASILRE---------AGAIHVLVTGSLHLVGGVLKLL 581
|
Source: Cricetulus griseus Species: Cricetulus griseus Genus: Cricetulus Family: Cricetidae Order: Rodentia Class: Mammalia Phylum: Chordata Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1255 | ||||||
| MGI|MGI:95576 | 587 | Fpgs "folylpolyglutamyl synthe | 0.237 | 0.507 | 0.439 | 3.7e-84 | |
| UNIPROTKB|A6H751 | 585 | FPGS "Folylpolyglutamate synth | 0.254 | 0.545 | 0.415 | 3.3e-83 | |
| UNIPROTKB|Q05932 | 587 | FPGS "Folylpolyglutamate synth | 0.241 | 0.516 | 0.432 | 1.9e-81 | |
| UNIPROTKB|E2RRC8 | 588 | FPGS "Folylpolyglutamate synth | 0.228 | 0.488 | 0.444 | 6.4e-81 | |
| FB|FBgn0030407 | 572 | CG2543 [Drosophila melanogaste | 0.246 | 0.540 | 0.423 | 2e-80 | |
| ZFIN|ZDB-GENE-040426-2781 | 572 | fpgs "folylpolyglutamate synth | 0.234 | 0.513 | 0.442 | 4.1e-79 | |
| WB|WBGene00017777 | 510 | F25B5.6 [Caenorhabditis elegan | 0.219 | 0.541 | 0.431 | 4.3e-76 | |
| DICTYBASE|DDB_G0292632 | 626 | folC "tetrahydrofolylpolygluta | 0.229 | 0.460 | 0.403 | 4.3e-64 | |
| TAIR|locus:2153639 | 571 | DFB "DHFS-FPGS homolog B" [Ara | 0.229 | 0.504 | 0.400 | 1.2e-60 | |
| UNIPROTKB|E1B859 | 430 | FPGS "Folylpolyglutamate synth | 0.254 | 0.741 | 0.415 | 1.8e-60 |
| MGI|MGI:95576 Fpgs "folylpolyglutamyl synthetase" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 652 (234.6 bits), Expect = 3.7e-84, Sum P(3) = 3.7e-84
Identities = 138/314 (43%), Positives = 198/314 (63%)
Query: 37 GAVTPHASRSNKEI---PQS----YVDAIKQLNTLQSNIRTIRESKL-RKDPVEMQAVQV 88
GA T A+R PQ Y DA++ LNTLQ+N + + K R DP QA Q+
Sbjct: 21 GATTEGAARRGMSAWPAPQEPGMEYQDAVRTLNTLQTNASYLEQVKRQRSDP---QA-QL 76
Query: 89 DQVVQYLGHLNITLDDIKKLNVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEV 148
+ + YL + ++D+ +LN+IH++GTKGKGSTCA+ E ILR++G TGFFSSPH+++V
Sbjct: 77 EAMEMYLARSGLQVEDLNRLNIIHVTGTKGKGSTCAFTERILRNYGLKTGFFSSPHMVQV 136
Query: 149 RERIKLNGEPISYDKFTKYFWTVYNALHAKRKHAE-DMPAYFKFLTVMSFYVFVKEKPDA 207
RERI++NG+PIS + FTK+FW +YN L + + MP+YF+FLT+M+F+VF++EK D
Sbjct: 137 RERIRINGKPISPELFTKHFWCLYNQLEEFKDDSHVSMPSYFRFLTLMAFHVFLQEKVDL 196
Query: 208 VIMEVGIGGRYDNTNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIMKPNCIAVTS 267
++EVGIGG +D TNII V G++SLG DHT++LG+T+E+I QK GI KP A T
Sbjct: 197 AVVEVGIGGAFDCTNIIRKPVVCGVSSLGIDHTSLLGDTVEKIAWQKGGIFKPGVPAFTV 256
Query: 268 ANQRGPCKQILLETSRALNCVLLEAPSILNYRWRGQPLDEDWKSTVQSINISLAIQLAYL 327
GP +L + ++ + C L P + G PL + Q N +LA+QLA+
Sbjct: 257 VQPEGPLA-VLRDRAQQIGCPLYLCPPLEALEEVGLPLSLGLEGAHQRSNAALALQLAHC 315
Query: 328 WMFRMNKS--AELK 339
W+ R + ELK
Sbjct: 316 WLERQDHQDIQELK 329
|
|
| UNIPROTKB|A6H751 FPGS "Folylpolyglutamate synthase, mitochondrial" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 629 (226.5 bits), Expect = 3.3e-83, Sum P(3) = 3.3e-83
Identities = 137/330 (41%), Positives = 199/330 (60%)
Query: 48 KEIPQSYVDAIKQLNTLQSNIRTIRESKLRK-DPVEMQAVQVDQVVQYLGHLNITLDDIK 106
+E Y DA++ LNTLQ+N + K ++ DP Q++ + YL + ++D+
Sbjct: 36 QEPDMEYQDAVRTLNTLQTNANYLEMVKRKRGDP----QTQLEAMKLYLARSGLQVEDLD 91
Query: 107 KLNVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTK 166
+LN+IHI+GTKGKGSTCA+ E ILRS+G TGFFSSPHL++VRERI++NG+PIS + FTK
Sbjct: 92 QLNIIHITGTKGKGSTCAFTERILRSYGLKTGFFSSPHLVQVRERIRINGQPISSELFTK 151
Query: 167 YFWTVYNALHAKRKHAE--DMPAYFKFLTVMSFYVFVKEKPDAVIMEVGIGGRYDNTNII 224
+FW +Y+ L + + MP YF+FLT+M+F+VF++EK D ++EVGIGG YD TNII
Sbjct: 152 HFWRLYHRLEETKDDSSCVSMPGYFRFLTLMAFHVFLQEKVDLAVLEVGIGGAYDCTNII 211
Query: 225 PNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIMKPNCIAVTSANQRGPCKQILLETSRA 284
V GITSLG DHT +LG+T+E+I QK GI K A T P +L + ++
Sbjct: 212 RKPVVCGITSLGIDHTGLLGDTMEKIAWQKGGIFKSGVPAFTVLQPDEPLA-VLRDRAQQ 270
Query: 285 LNCVLLEAPSILNYRWRGQPLDEDWKSTVQSINISLAIQLAYLWMFRMN--KSAELKSVI 342
++C L P + G PL + Q N +LA+Q+A W+ + + ELK+
Sbjct: 271 ISCPLYLCPPLQALEEGGPPLTLGLEGEHQRSNAALALQVARCWLQQKGYQDAGELKASR 330
Query: 343 DKFLAEMRVSSPNE-TPGGQGHLSSCETPG 371
++ ++ + TP Q L E PG
Sbjct: 331 PSLPGQLPLAPVFQPTPRMQQGLRHTEWPG 360
|
|
| UNIPROTKB|Q05932 FPGS "Folylpolyglutamate synthase, mitochondrial" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 646 (232.5 bits), Expect = 1.9e-81, Sum P(2) = 1.9e-81
Identities = 137/317 (43%), Positives = 198/317 (62%)
Query: 639 SLHLVGAFLNVLITPHASR---SNKEIPQS----YVDAIKQLNTLQSNIRTIRESKLRK- 690
+L L A + T A+R S +PQ Y DA++ LNTLQ+N + + K ++
Sbjct: 11 ALFLAAASARGITTQVAARRGLSAWPVPQEPSMEYQDAVRMLNTLQTNAGYLEQVKRQRG 70
Query: 691 DPVEMQAVQVDQVVQYLGHLNITLDDIKKLNVIHISGTKGKGSTCAYCESILRSHGFSTG 750
DP Q++ + YL + ++D+ +LN+IH++GTKGKGSTCA+ E ILRS+G TG
Sbjct: 71 DP----QTQLEAMELYLARSGLQVEDLDRLNIIHVTGTKGKGSTCAFTECILRSYGLKTG 126
Query: 751 FFSSPHLIEVRERIKLNGEPISYDKFTKYFWTVYNALH-AKRKHAEDMPAYFKFLTVMSF 809
FFSSPHL++VRERI++NG+PIS + FTKYFW +Y+ L K MP YF+FLT+M+F
Sbjct: 127 FFSSPHLVQVRERIRINGQPISPELFTKYFWRLYHRLEETKDGSCVSMPPYFRFLTLMAF 186
Query: 810 YVFVKEKPDAVIMEVGIGGRYDNTNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKAGI 869
+VF++EK D ++EVGIGG YD TNII V G++SLG DHT++LG+T+E+I QK GI
Sbjct: 187 HVFLQEKVDLAVVEVGIGGAYDCTNIIRKPVVCGVSSLGIDHTSLLGDTVEKIAWQKGGI 246
Query: 870 MKPNCIAVTSANQRGPCKQILLETSRALNCVLLEAPSILNYRWRGQPLDEDWKSTVQSIN 929
K A T GP +L + ++ ++C L P + G PL + Q N
Sbjct: 247 FKQGVPAFTVLQPEGPLA-VLRDRAQQISCPLYLCPMLEALEEGGPPLTLGLEGEHQRSN 305
Query: 930 ISLAIQLAYLWMFRMNK 946
+LA+QLA+ W+ R ++
Sbjct: 306 AALALQLAHCWLQRQDR 322
|
|
| UNIPROTKB|E2RRC8 FPGS "Folylpolyglutamate synthase" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 634 (228.2 bits), Expect = 6.4e-81, Sum P(3) = 6.4e-81
Identities = 132/297 (44%), Positives = 189/297 (63%)
Query: 48 KEIPQSYVDAIKQLNTLQSNIRTIRESKLRK-DPVEMQAVQVDQVVQYLGHLNITLDDIK 106
+E Y DA++ LNTLQ+N + + K ++ DP Q++ + YL + ++D+
Sbjct: 39 QEPGMEYQDAVRTLNTLQTNAGYLEQVKRQRGDP----QTQLEAMKLYLARSGLQVEDLD 94
Query: 107 KLNVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTK 166
+LN+IH++GTKGKGSTCA+ E ILRS+G TGFFSSPHL++VRERI++NG+PIS + FTK
Sbjct: 95 QLNIIHVTGTKGKGSTCAFTERILRSYGLKTGFFSSPHLVQVRERIRINGQPISPELFTK 154
Query: 167 YFWTVYNALHAKR--KHAEDMPAYFKFLTVMSFYVFVKEKPDAVIMEVGIGGRYDNTNII 224
+FW +Y+ L + MPAYF+FLT+M+F++F++EK D ++EVGIGG YD TNII
Sbjct: 155 HFWHLYHRLEETKDSNSCVSMPAYFRFLTLMAFHIFLQEKVDLAVVEVGIGGAYDCTNII 214
Query: 225 PNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIMKPNCIAVTSANQRGPCKQILLETSRA 284
V GI+SLG DHT++LG+T+EEI QK GI K A T GP +L + ++
Sbjct: 215 RKPVVCGISSLGLDHTSLLGDTVEEIAWQKGGIFKRGVPAFTVLQPDGPLA-VLQDRAQK 273
Query: 285 LNCVLLEAPSILNYRWRGQPLDEDWKSTVQSINISLAIQLAYLWMFRMNKSA--ELK 339
++C L P + G PL + Q N +LA+QLA W+ + N ELK
Sbjct: 274 ISCPLYLCPPLEALEEGGPPLALGLEGEHQRSNAALALQLARCWLQQKNHQGLGELK 330
|
|
| FB|FBgn0030407 CG2543 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 633 (227.9 bits), Expect = 2.0e-80, Sum P(4) = 2.0e-80
Identities = 135/319 (42%), Positives = 197/319 (61%)
Query: 18 AHRKTLPDKTEVHHGGYKHGAVTPHASRSNKEIPQSYVDAIKQLNTLQSNIRTIRESKLR 77
A R P + ++ G + G + + +NK+ ++ AIKQLN+LQSN IR S +
Sbjct: 61 AERVLNPPQQSIN-GNHVSGNIQCSSDNNNKDTNAAFELAIKQLNSLQSNDAAIRNS-MS 118
Query: 78 KDPVEMQAVQVDQVVQYLGHLNITLDDIKKLNVIHISGTKGKGSTCAYCESILRSHGFST 137
V+ +A ++YL + L+ +++L+ IH++GTKGKGSTCA ES+LR G+ T
Sbjct: 119 NSRVDTKA----DTIKYLERSGLPLETVEQLSFIHVAGTKGKGSTCALTESLLRHQGYRT 174
Query: 138 GFFSSPHLIEVRERIKLNGEPISYDKFTKYFWTVYNALHAKRKHAEDMPAYFKFLTVMSF 197
GFFSSPH++ ERI+++G+ +S DKFT+ FW VY+ L R+H DMPAYFKFLT++ F
Sbjct: 175 GFFSSPHILFTNERIRIDGQLLSKDKFTEQFWKVYSRLWDLREHDHDMPAYFKFLTILGF 234
Query: 198 YVFVKEKPDAVIMEVGIGGRYDNTNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKAGI 257
+VFV E D V++EVGIGG +D TNI+ N VGITSLG +HT +LG T+ EI QKAGI
Sbjct: 235 HVFVAENVDVVVLEVGIGGEHDCTNIVRNVRTVGITSLGLEHTELLGRTLPEIAWQKAGI 294
Query: 258 MKPNCIAVTSANQRGPCKQILLETSRALNCVLLEAPSILNYRWRGQPLDEDWK--STVQS 315
+K T Q C +++ + ++ + L E P +Y +R + W+ S +
Sbjct: 295 IKTGSHVFTHVTQP-ECLEVIRQRTKEHSATLYEVPPTEDY-FRSKAYAPIWQTFSNLIR 352
Query: 316 INISLAIQLAYLWMFRMNK 334
+N SLAIQLA W+ + K
Sbjct: 353 LNGSLAIQLAQDWLSQSGK 371
|
|
| ZFIN|ZDB-GENE-040426-2781 fpgs "folylpolyglutamate synthase" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 642 (231.1 bits), Expect = 4.1e-79, Sum P(2) = 4.1e-79
Identities = 134/303 (44%), Positives = 188/303 (62%)
Query: 642 LVGAFLNVLITPHASRSNKEIPQSYVDAIKQLNTLQSNIRTIRESKLRKDPVEMQAVQVD 701
+VG + + T A R + Y DA+ LNTLQ+N + + K + ++Q +
Sbjct: 26 IVGLSVRLSSTKAAPRYRR---MDYQDAVCTLNTLQTNASALEQVKRERGHPQLQLQAMR 82
Query: 702 QVVQYLGHLNITLDDIKKLNVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVR 761
+Q G + ++++ +LN+IH++GTKGKGSTCA+ E ILR++GF TGF+SSPHL++VR
Sbjct: 83 GFLQRAG---LKVEELDRLNIIHVTGTKGKGSTCAFTEKILRNYGFRTGFYSSPHLVQVR 139
Query: 762 ERIKLNGEPISYDKFTKYFWTVYNALH-AKRKHAEDMPAYFKFLTVMSFYVFVKEKPDAV 820
ERI++NG+PI + FTKYFW VY L K H MPAYF+FLT+++F+VF++EK D
Sbjct: 140 ERIRINGQPIGKELFTKYFWQVYGRLEETKDAHGGSMPAYFRFLTILAFHVFLQEKVDLA 199
Query: 821 IMEVGIGGRYDNTNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIMKPNCIAVTSA 880
++EVGIGG YD TNII GI+SLG DHT++LG+TIE+I QK GI KP A T
Sbjct: 200 VIEVGIGGAYDCTNIIRRPWGCGISSLGIDHTSILGDTIEKIAWQKGGIFKPGVPAFTVK 259
Query: 881 NQRGPCKQILLETSRALNCVLLEAPSILNYRWRGQPLDEDWKSTVQSINISLAIQLAYLW 940
GP K +L E + + C L P + Y G L Q N SLA+QL++ W
Sbjct: 260 QPDGPMK-VLQERAEEVGCSLSVCPDLDEYESEGS-LSLGLAGQHQRSNASLALQLSHTW 317
Query: 941 MFR 943
+ R
Sbjct: 318 LQR 320
|
|
| WB|WBGene00017777 F25B5.6 [Caenorhabditis elegans (taxid:6239)] | Back alignment and assigned GO terms |
|---|
Score = 609 (219.4 bits), Expect = 4.3e-76, Sum P(4) = 4.3e-76
Identities = 122/283 (43%), Positives = 184/283 (65%)
Query: 46 SNKEIPQSYVDAIKQLNTLQSNIRTIRESKLRKDPVEMQAVQVDQVVQYLGHLNITLDDI 105
S K +P Y ++++ LN LQSN TI+ KLR +QA+ + Q +YL LNI+ +D+
Sbjct: 29 SEKAVP-CYEESVRLLNGLQSNAATIK--KLRVQRENLQAINLPQCRKYLESLNISAEDL 85
Query: 106 KKLNVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFT 165
LN+IH+SGTKGKGS CA+ ESILRS G TGF+SSPHL+ VRERI+++G+P+S F
Sbjct: 86 NALNIIHVSGTKGKGSACAFVESILRSQGLRTGFYSSPHLVHVRERIQVDGQPVSEQMFA 145
Query: 166 KYFWTVYNALHAKRKHAEDMPAYFKFLTVMSFYVFVKEKPDAVIMEVGIGGRYDNTNIIP 225
+ F+ VY+ + KR+H+++MPAYFKFLT+++F +FVK +I+EVGIGG YD TN++
Sbjct: 146 EEFFHVYDII--KREHSDNMPAYFKFLTLLAFRIFVKLNVQVMILEVGIGGEYDCTNVVE 203
Query: 226 NTAVVGITSLGYDHTAVLGNTIEEITMQKAGIMKPNCIAVTSANQRGPCKQILLETSRAL 285
V G+T+L YDH ++LGN + EI KAGI K + A S +++L+ + +
Sbjct: 204 KPKVCGVTTLDYDHMSILGNKLSEIAWHKAGIFKESVPAFYSPTTT-EAEEVLIARAISK 262
Query: 286 NCVLLEAPSILNYRWRGQPLDEDWKSTVQSINISLAIQLAYLW 328
+ L + P + Y++ + + + Q N+S+A+QL W
Sbjct: 263 HVPLFQTPPVSAYQF-ARDISPGIRGAHQFSNVSMALQLVRAW 304
|
|
| DICTYBASE|DDB_G0292632 folC "tetrahydrofolylpolyglutamate synthase" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 518 (187.4 bits), Expect = 4.3e-64, Sum P(3) = 4.3e-64
Identities = 124/307 (40%), Positives = 178/307 (57%)
Query: 52 QSYVDAIKQLNTLQSNIRTIRE-SKLRKDPVEMQA-VQVDQVVQYLGHLNITLDDIKKLN 109
+SY +A+ L TLQSN I +K R+D E A ++++ Y L+I D+++ +
Sbjct: 79 RSYEEAVNALLTLQSNQTVIISWTKERRDNKEESAKFLMEEMRNYCKTLSI---DLERES 135
Query: 110 VIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTKYFW 169
+IH++GTKGKGSTCA ESI+R GFSTG F+SPHLI RERI++NGE IS + F++YFW
Sbjct: 136 IIHVAGTKGKGSTCAITESIIREQGFSTGLFTSPHLISPRERIRINGEMISKEMFSQYFW 195
Query: 170 TVYNALHAKRKHAEDMPAYFKFLTVMSFYVFVKEKPDAVIMEVGIGGRYDNTNIIPNTAV 229
++ L + + +P +F++LT+M+ +F E I+EVGIGGR D+TN+ P V
Sbjct: 196 NCWDLLI--KDYQTQLPNFFRYLTLMALKIFQDEAIQCTILEVGIGGRMDSTNVFPKPMV 253
Query: 230 VGITSLGYDHTAVLGNTIEEITMQKAGIMKPNCIAVTSANQRGPCKQILLETSRALNCVL 289
GI++LGYDH +LGNT+ EI ++KAGIMK T ++Q +L++ S + L
Sbjct: 254 TGISALGYDHQNLLGNTLAEIALEKAGIMKVGIPIFTVSSQLPEAINVLIDHSNKVKSPL 313
Query: 290 LEAPSILNYRW-------RGQPLDE-DWKSTVQSINISLAIQLAYLWMFRMNKSAELKSV 341
PSI Y ++ K T Q N SLAI LA W K K V
Sbjct: 314 SIVPSIDQYTISSGGGNNNNNKIESIGLKGTHQLENASLAIALANCWF----KKQTFKDV 369
Query: 342 IDKFLAE 348
+ F +E
Sbjct: 370 NEIFNSE 376
|
|
| TAIR|locus:2153639 DFB "DHFS-FPGS homolog B" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 519 (187.8 bits), Expect = 1.2e-60, Sum P(3) = 1.2e-60
Identities = 123/307 (40%), Positives = 181/307 (58%)
Query: 53 SYVDAIKQLNTLQSNIRTIRESKLRKDPVEMQAVQVDQVVQYLGHLNITLDDIKKLNVIH 112
SY +A+ L++L + R+ + + D E+ V YL L++ +DI K+NVIH
Sbjct: 66 SYEEALAALSSLITK-RSRADKSNKGDRFEL-------VFDYLKLLDLE-EDILKMNVIH 116
Query: 113 ISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTKYFWTVY 172
++GTKGKGSTC + ESI+R++GF TG F+SPHLI+VRER +L+G IS +KF YFW Y
Sbjct: 117 VAGTKGKGSTCTFTESIIRNYGFRTGLFTSPHLIDVRERFRLDGVDISEEKFLGYFWWCY 176
Query: 173 NALHAKRKHAEDMPAYFKFLTVMSFYVFVKEKPDAVIMEVGIGGRYDNTNIIPNTAVVGI 232
N L + MP YF+FL +++F +F E+ DA I+EVG+GG++D TN + V GI
Sbjct: 177 NRLKERTNEEIPMPTYFRFLALLAFKIFAAEEVDAAILEVGLGGKFDATNAVQKPVVCGI 236
Query: 233 TSLGYDHTAVLGNTIEEITMQKAGIMKPNCIAVTSANQRGPCKQILLETSRALNCVLLEA 292
+SLGYDH +LG+T+ +I +KAGI K A T Q ++L E + V LE
Sbjct: 237 SSLGYDHMEILGDTLGKIAGEKAGIFKLGVPAFT-VPQPDEAMRVLEEKASETE-VNLEV 294
Query: 293 PSILNYRW-RGQPLDEDWKSTVQSINISLAIQLAYLWMFRMNK----SAELKSVI-DKFL 346
L R GQ L D + Q +N LA+ LA +W+ ++ K S S++ +KF+
Sbjct: 295 VQPLTARLLSGQKLGLDGEH--QYVNAGLAVSLASIWLQQIGKLEVPSRTQMSILPEKFI 352
Query: 347 AEMRVSS 353
+ +S
Sbjct: 353 KGLATAS 359
|
|
| UNIPROTKB|E1B859 FPGS "Folylpolyglutamate synthase, mitochondrial" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 629 (226.5 bits), Expect = 1.8e-60, P = 1.8e-60
Identities = 137/330 (41%), Positives = 199/330 (60%)
Query: 48 KEIPQSYVDAIKQLNTLQSNIRTIRESKLRK-DPVEMQAVQVDQVVQYLGHLNITLDDIK 106
+E Y DA++ LNTLQ+N + K ++ DP Q++ + YL + ++D+
Sbjct: 36 QEPDMEYQDAVRTLNTLQTNANYLEMVKRKRGDP----QTQLEAMKLYLARSGLQVEDLD 91
Query: 107 KLNVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTK 166
+LN+IHI+GTKGKGSTCA+ E ILRS+G TGFFSSPHL++VRERI++NG+PIS + FTK
Sbjct: 92 QLNIIHITGTKGKGSTCAFTERILRSYGLKTGFFSSPHLVQVRERIRINGQPISSELFTK 151
Query: 167 YFWTVYNALHAKRKHAE--DMPAYFKFLTVMSFYVFVKEKPDAVIMEVGIGGRYDNTNII 224
+FW +Y+ L + + MP YF+FLT+M+F+VF++EK D ++EVGIGG YD TNII
Sbjct: 152 HFWRLYHRLEETKDDSSCVSMPGYFRFLTLMAFHVFLQEKVDLAVLEVGIGGAYDCTNII 211
Query: 225 PNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIMKPNCIAVTSANQRGPCKQILLETSRA 284
V GITSLG DHT +LG+T+E+I QK GI K A T P +L + ++
Sbjct: 212 RKPVVCGITSLGIDHTGLLGDTMEKIAWQKGGIFKSGVPAFTVLQPDEPLA-VLRDRAQQ 270
Query: 285 LNCVLLEAPSILNYRWRGQPLDEDWKSTVQSINISLAIQLAYLWMFRMN--KSAELKSVI 342
++C L P + G PL + Q N +LA+Q+A W+ + + ELK+
Sbjct: 271 ISCPLYLCPPLQALEEGGPPLTLGLEGEHQRSNAALALQVARCWLQQKGYQDAGELKASR 330
Query: 343 DKFLAEMRVSSPNE-TPGGQGHLSSCETPG 371
++ ++ + TP Q L E PG
Sbjct: 331 PSLPGQLPLAPVFQPTPRMQQGLRHTEWPG 360
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 6.3.2.17 | LOW CONFIDENCE prediction! |
| 3rd Layer | 6.3.2 | 0.691 |
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1255 | |||
| PLN02881 | 530 | PLN02881, PLN02881, tetrahydrofolylpolyglutamate s | 5e-79 | |
| PLN02881 | 530 | PLN02881, PLN02881, tetrahydrofolylpolyglutamate s | 5e-79 | |
| TIGR01499 | 398 | TIGR01499, folC, folylpolyglutamate synthase/dihyd | 1e-72 | |
| TIGR01499 | 398 | TIGR01499, folC, folylpolyglutamate synthase/dihyd | 5e-70 | |
| COG0285 | 427 | COG0285, FolC, Folylpolyglutamate synthase [Coenzy | 8e-69 | |
| COG0285 | 427 | COG0285, FolC, Folylpolyglutamate synthase [Coenzy | 8e-69 | |
| PLN02913 | 510 | PLN02913, PLN02913, dihydrofolate synthetase | 8e-35 | |
| PLN02913 | 510 | PLN02913, PLN02913, dihydrofolate synthetase | 8e-35 | |
| PRK10846 | 416 | PRK10846, PRK10846, bifunctional folylpolyglutamat | 6e-29 | |
| PRK10846 | 416 | PRK10846, PRK10846, bifunctional folylpolyglutamat | 6e-29 | |
| PLN02881 | 530 | PLN02881, PLN02881, tetrahydrofolylpolyglutamate s | 8e-16 | |
| PLN02881 | 530 | PLN02881, PLN02881, tetrahydrofolylpolyglutamate s | 2e-11 | |
| PLN02881 | 530 | PLN02881, PLN02881, tetrahydrofolylpolyglutamate s | 2e-09 | |
| TIGR01499 | 398 | TIGR01499, folC, folylpolyglutamate synthase/dihyd | 9e-09 | |
| COG0285 | 427 | COG0285, FolC, Folylpolyglutamate synthase [Coenzy | 5e-07 | |
| COG0285 | 427 | COG0285, FolC, Folylpolyglutamate synthase [Coenzy | 1e-04 | |
| COG0285 | 427 | COG0285, FolC, Folylpolyglutamate synthase [Coenzy | 6e-04 | |
| pfam02875 | 88 | pfam02875, Mur_ligase_C, Mur ligase family, glutam | 8e-04 |
| >gnl|CDD|215476 PLN02881, PLN02881, tetrahydrofolylpolyglutamate synthase | Back alignment and domain information |
|---|
Score = 269 bits (691), Expect = 5e-79
Identities = 117/282 (41%), Positives = 162/282 (57%), Gaps = 12/282 (4%)
Query: 53 SYVDAIKQLNTLQSNIRTIRESKLRKDPVEMQAVQVDQVVQYLGHLNITLDDIKKLNVIH 112
SY +A+ L++L + K R DP Q D + YL L + + I +L VIH
Sbjct: 15 SYEEALDALSSLIT-------KKSRADP-SNPGDQFDLLFDYLKILELE-EAISRLKVIH 65
Query: 113 ISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTKYFWTVY 172
++GTKGKGSTC + ESILR+ GF TG F+SPHLI+VRER +L+G IS +KF +YFW +
Sbjct: 66 VAGTKGKGSTCTFTESILRNCGFRTGLFTSPHLIDVRERFRLDGVDISEEKFLRYFWWCW 125
Query: 173 NALHAKRKHAEDMPAYFKFLTVMSFYVFVKEKPDAVIMEVGIGGRYDNTNIIPNTAVVGI 232
+ L K MPAYF+FLT+++F +F E+ D I+EVG+GGR D TN++ V GI
Sbjct: 126 DRLKEKTTEDLPMPAYFRFLTLLAFKIFSAEQVDVAILEVGLGGRLDATNVVQKPVVCGI 185
Query: 233 TSLGYDHTAVLGNTIEEITMQKAGIMKPNCIAVTSANQRGPCKQILLETSRALNCVLLEA 292
TSLGYDH +LG+T+ +I +KAGI KP A T Q ++L E + L L
Sbjct: 186 TSLGYDHMEILGDTLGKIAGEKAGIFKPGVPAFTVP-QPDEAMRVLEERASELGVPLQVV 244
Query: 293 PSILNYRWRGQPLDEDWKSTVQSINISLAIQLAYLWMFRMNK 334
+ +Y G L + Q +N LA+ L W+ R
Sbjct: 245 EPLDSYGLSGLKLGLAGEH--QYLNAGLAVALCSTWLQRTGH 284
|
Length = 530 |
| >gnl|CDD|215476 PLN02881, PLN02881, tetrahydrofolylpolyglutamate synthase | Back alignment and domain information |
|---|
Score = 269 bits (691), Expect = 5e-79
Identities = 117/282 (41%), Positives = 162/282 (57%), Gaps = 12/282 (4%)
Query: 665 SYVDAIKQLNTLQSNIRTIRESKLRKDPVEMQAVQVDQVVQYLGHLNITLDDIKKLNVIH 724
SY +A+ L++L + K R DP Q D + YL L + + I +L VIH
Sbjct: 15 SYEEALDALSSLIT-------KKSRADP-SNPGDQFDLLFDYLKILELE-EAISRLKVIH 65
Query: 725 ISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTKYFWTVY 784
++GTKGKGSTC + ESILR+ GF TG F+SPHLI+VRER +L+G IS +KF +YFW +
Sbjct: 66 VAGTKGKGSTCTFTESILRNCGFRTGLFTSPHLIDVRERFRLDGVDISEEKFLRYFWWCW 125
Query: 785 NALHAKRKHAEDMPAYFKFLTVMSFYVFVKEKPDAVIMEVGIGGRYDNTNIIPNTAVVGI 844
+ L K MPAYF+FLT+++F +F E+ D I+EVG+GGR D TN++ V GI
Sbjct: 126 DRLKEKTTEDLPMPAYFRFLTLLAFKIFSAEQVDVAILEVGLGGRLDATNVVQKPVVCGI 185
Query: 845 TSLGYDHTAVLGNTIEEITMQKAGIMKPNCIAVTSANQRGPCKQILLETSRALNCVLLEA 904
TSLGYDH +LG+T+ +I +KAGI KP A T Q ++L E + L L
Sbjct: 186 TSLGYDHMEILGDTLGKIAGEKAGIFKPGVPAFTVP-QPDEAMRVLEERASELGVPLQVV 244
Query: 905 PSILNYRWRGQPLDEDWKSTVQSINISLAIQLAYLWMFRMNK 946
+ +Y G L + Q +N LA+ L W+ R
Sbjct: 245 EPLDSYGLSGLKLGLAGEH--QYLNAGLAVALCSTWLQRTGH 284
|
Length = 530 |
| >gnl|CDD|233440 TIGR01499, folC, folylpolyglutamate synthase/dihydrofolate synthase | Back alignment and domain information |
|---|
Score = 247 bits (634), Expect = 1e-72
Identities = 121/448 (27%), Positives = 183/448 (40%), Gaps = 85/448 (18%)
Query: 699 QVDQVVQYLGHLNITLDDIKKLNVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLI 758
++ ++++ LG+ VIH++GT GKGSTCA+ ESILR+ G+ G F+SPHL+
Sbjct: 3 RMKKLLEALGNP------QDLYPVIHVAGTNGKGSTCAFLESILRAAGYKVGLFTSPHLV 56
Query: 759 EVRERIKLNGEPISYDKFTKYFWTVYNALHAKRKHAEDMPAYFKFLTVMSFYVFVKEKPD 818
ERI++NGEPIS ++ + F V L K P YF+ LT+++F F + + D
Sbjct: 57 SFNERIRINGEPISDEELAQAFEQVRPIL----KKLSQQPTYFELLTLLAFLYFAQAQVD 112
Query: 819 AVIMEVGIGGRYDNTNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIMKPNCIAVT 878
++EVG+GGR D TN+I V ITS+G DHT +LG+T+EEI +KAGI+K VT
Sbjct: 113 VAVLEVGLGGRLDATNVIE-PLVSVITSIGLDHTEILGDTLEEIAWEKAGIIKEGVPIVT 171
Query: 879 SANQRGPCKQILLETSRALNCVLLEAPSILNYRWRGQPLDEDWKSTVQSINISLAIQLAY 938
Q +L + ++ L NY + + L
Sbjct: 172 -GPQEPEALNVLKKKAQEKGAPLFVVGRDFNY-SETDENYLSFSGANLFLEPLALSLLGD 229
Query: 939 LWMFRMNKSAELKSVIDKFLAEMRVSSPNETPGGQGHLSSCETPGGQGHLSFSETPGGQG 998
N A L L++ E G Q + SE +
Sbjct: 230 HQ--AEN--AAL------------------------ALAALEVLGKQNSILLSE----EA 257
Query: 999 HLTGNQSSLLMGPHFEIDPKTYRGIKACVWPGRVQVIRKNNFKYFLDGAHTTDSIELCAK 1058
G +++ G EI + ++N LDGAH S E A+
Sbjct: 258 IRKGLANTIWPG-RLEI-------------------LSEDNPNILLDGAHNPHSAEALAE 297
Query: 1059 WFLRKSEAEANPTQSKSSNVIQRILVFNVTGERDPTKLLSPLLQSNQFEYILVTP----- 1113
WF + + IL+F ++D +L+PL E +
Sbjct: 298 WF-----KKRFNGRPI-------ILLFGALADKDAAAMLAPLKPVLDKEVFVTPFDYPRA 345
Query: 1114 ---NILTNEIRWRGQPLDEDWKSTVQSI 1138
L G EDW+ +
Sbjct: 346 DDAADLAAFAETFGGETVEDWREALALA 373
|
This model represents the FolC family of folate pathway proteins. Most examples are bifunctional, active as both folylpolyglutamate synthetase (EC 6.3.2.17) and dihydrofolate synthetase (EC 6.3.2.12). The two activities are similar - ATP + glutamate + dihydropteroate or tetrahydrofolyl-[Glu](n) = ADP + orthophosphate + dihydrofolate or tetrahydrofolyl-[Glu](n+1). A mutation study of the FolC gene of E. coli suggests that both activities belong to the same active site. Because some examples are monofunctional (and these cannot be separated phylogenetically), the model is treated as subfamily, not equivalog [Biosynthesis of cofactors, prosthetic groups, and carriers, Folic acid]. Length = 398 |
| >gnl|CDD|233440 TIGR01499, folC, folylpolyglutamate synthase/dihydrofolate synthase | Back alignment and domain information |
|---|
Score = 240 bits (614), Expect = 5e-70
Identities = 116/427 (27%), Positives = 177/427 (41%), Gaps = 88/427 (20%)
Query: 87 QVDQVVQYLGHLNITLDDIKKLNVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLI 146
++ ++++ LG+ VIH++GT GKGSTCA+ ESILR+ G+ G F+SPHL+
Sbjct: 3 RMKKLLEALGNP------QDLYPVIHVAGTNGKGSTCAFLESILRAAGYKVGLFTSPHLV 56
Query: 147 EVRERIKLNGEPISYDKFTKYFWTVYNALHAKRKHAEDMPAYFKFLTVMSFYVFVKEKPD 206
ERI++NGEPIS ++ + F V L K P YF+ LT+++F F + + D
Sbjct: 57 SFNERIRINGEPISDEELAQAFEQVRPIL----KKLSQQPTYFELLTLLAFLYFAQAQVD 112
Query: 207 AVIMEVGIGGRYDNTNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIMKPNCIAVT 266
++EVG+GGR D TN+I V ITS+G DHT +LG+T+EEI +KAGI+K VT
Sbjct: 113 VAVLEVGLGGRLDATNVIE-PLVSVITSIGLDHTEILGDTLEEIAWEKAGIIKEGVPIVT 171
Query: 267 SANQRGPCKQILLETSRALNCVLLEAPSILNYRWRGQPLDEDWKSTVQSINISLAIQLAY 326
Q +L + ++ L NY + + L
Sbjct: 172 -GPQEPEALNVLKKKAQEKGAPLFVVGRDFNY-SETDENYLSFSGANLFLEPLALSLLGD 229
Query: 327 LWMFRMNKSAELKSVIDKFLAEMRVSSPNETPGGQGHLSSCETPGGQGHLSFSETPGGQG 386
N A L L++ E G Q + SE +
Sbjct: 230 HQ--AEN--AAL------------------------ALAALEVLGKQNSILLSE----EA 257
Query: 387 HLTGNQSSLLMGPHFEIDPKTYRGIKACVWPGRVQVIRKNNFKYFLDGAHTTDSIELCAK 446
G +++ G EI + ++N LDGAH S E A+
Sbjct: 258 IRKGLANTIWPG-RLEI-------------------LSEDNPNILLDGAHNPHSAEALAE 297
Query: 447 WFLRKSEAEASSSRSVSSCPLDPTQSKSSNVIQRILVFNVTGERDPTKLLSPLLQSNQFE 506
WF ++ IL+F ++D +L+PL E
Sbjct: 298 WFKKRFNGR-----------------------PIILLFGALADKDAAAMLAPLKPVLDKE 334
Query: 507 YILVTPN 513
+ +
Sbjct: 335 VFVTPFD 341
|
This model represents the FolC family of folate pathway proteins. Most examples are bifunctional, active as both folylpolyglutamate synthetase (EC 6.3.2.17) and dihydrofolate synthetase (EC 6.3.2.12). The two activities are similar - ATP + glutamate + dihydropteroate or tetrahydrofolyl-[Glu](n) = ADP + orthophosphate + dihydrofolate or tetrahydrofolyl-[Glu](n+1). A mutation study of the FolC gene of E. coli suggests that both activities belong to the same active site. Because some examples are monofunctional (and these cannot be separated phylogenetically), the model is treated as subfamily, not equivalog [Biosynthesis of cofactors, prosthetic groups, and carriers, Folic acid]. Length = 398 |
| >gnl|CDD|223362 COG0285, FolC, Folylpolyglutamate synthase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 237 bits (608), Expect = 8e-69
Identities = 88/240 (36%), Positives = 123/240 (51%), Gaps = 16/240 (6%)
Query: 90 QVVQYLGHLNITLDDIKKLNVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVR 149
++++ LG+ K VIH++GT GKGSTCA+ ESILR G+ G ++SPHL+
Sbjct: 32 RLLERLGNPQ------KSPPVIHVAGTNGKGSTCAFLESILREAGYKVGVYTSPHLLSFN 85
Query: 150 ERIKLNGEPISYDKFTKYFWTVYNALHAKRKHAEDMPAYFKFLTVMSFYVFVKEKPDAVI 209
ERI++NGEPIS ++ F V A YF+ LT M+F F + K D I
Sbjct: 86 ERIRINGEPISDEELAAAFERVEE---AAGSLDLISLTYFEVLTAMAFLYFAEAKVDVAI 142
Query: 210 MEVGIGGRYDNTNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIMKPNCIAVTSAN 269
+EVG+GGR D TN+I V ITS+G DHTA LG+T+E I +KAGI+K AV
Sbjct: 143 LEVGLGGRLDATNVIEP-DVSVITSIGLDHTAFLGDTLESIAREKAGIIKAGKPAVIGEQ 201
Query: 270 QRGPCKQILLETSRALNCVLLEAPSILNYRWRGQPLDEDWKSTVQSINISLAIQLAYLWM 329
Q ++ E + L L +L ++ + Q L + L L
Sbjct: 202 QPPEALNVIAERAEELGAPL----FVLGPDFQVLEEGNGFSF--QGGGGLLDLPLPLLGG 255
|
Length = 427 |
| >gnl|CDD|223362 COG0285, FolC, Folylpolyglutamate synthase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 237 bits (608), Expect = 8e-69
Identities = 88/240 (36%), Positives = 123/240 (51%), Gaps = 16/240 (6%)
Query: 702 QVVQYLGHLNITLDDIKKLNVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVR 761
++++ LG+ K VIH++GT GKGSTCA+ ESILR G+ G ++SPHL+
Sbjct: 32 RLLERLGNPQ------KSPPVIHVAGTNGKGSTCAFLESILREAGYKVGVYTSPHLLSFN 85
Query: 762 ERIKLNGEPISYDKFTKYFWTVYNALHAKRKHAEDMPAYFKFLTVMSFYVFVKEKPDAVI 821
ERI++NGEPIS ++ F V A YF+ LT M+F F + K D I
Sbjct: 86 ERIRINGEPISDEELAAAFERVEE---AAGSLDLISLTYFEVLTAMAFLYFAEAKVDVAI 142
Query: 822 MEVGIGGRYDNTNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIMKPNCIAVTSAN 881
+EVG+GGR D TN+I V ITS+G DHTA LG+T+E I +KAGI+K AV
Sbjct: 143 LEVGLGGRLDATNVIEP-DVSVITSIGLDHTAFLGDTLESIAREKAGIIKAGKPAVIGEQ 201
Query: 882 QRGPCKQILLETSRALNCVLLEAPSILNYRWRGQPLDEDWKSTVQSINISLAIQLAYLWM 941
Q ++ E + L L +L ++ + Q L + L L
Sbjct: 202 QPPEALNVIAERAEELGAPL----FVLGPDFQVLEEGNGFSF--QGGGGLLDLPLPLLGG 255
|
Length = 427 |
| >gnl|CDD|178501 PLN02913, PLN02913, dihydrofolate synthetase | Back alignment and domain information |
|---|
Score = 140 bits (354), Expect = 8e-35
Identities = 60/163 (36%), Positives = 96/163 (58%), Gaps = 4/163 (2%)
Query: 107 KLNVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKLN--GEPISYDKF 164
K +H++GTKGKGST A+ +ILR+ G+S G ++SPHL +RERI + G+P+S +
Sbjct: 74 KFKAVHVAGTKGKGSTAAFLSNILRAQGYSVGCYTSPHLRSIRERISVGKLGKPVSTNTL 133
Query: 165 TKYFWTVYNALHAKRKHAEDMPAYFKFLTVMSFYVFVKEKPDAVIMEVGIGGRYDNTNII 224
F + L + +F+ LT ++F +F +E D ++E G+GG D TN+I
Sbjct: 134 NDLFHGIKPILDEAIQLENGSLTHFEVLTALAFKLFAQENVDIAVIEAGLGGARDATNVI 193
Query: 225 PNT--AVVGITSLGYDHTAVLGNTIEEITMQKAGIMKPNCIAV 265
++ A IT++G +H A LG ++E I + K+GI+K V
Sbjct: 194 DSSGLAASVITTIGEEHLAALGGSLESIALAKSGIIKQGRPVV 236
|
Length = 510 |
| >gnl|CDD|178501 PLN02913, PLN02913, dihydrofolate synthetase | Back alignment and domain information |
|---|
Score = 140 bits (354), Expect = 8e-35
Identities = 60/163 (36%), Positives = 96/163 (58%), Gaps = 4/163 (2%)
Query: 719 KLNVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKLN--GEPISYDKF 776
K +H++GTKGKGST A+ +ILR+ G+S G ++SPHL +RERI + G+P+S +
Sbjct: 74 KFKAVHVAGTKGKGSTAAFLSNILRAQGYSVGCYTSPHLRSIRERISVGKLGKPVSTNTL 133
Query: 777 TKYFWTVYNALHAKRKHAEDMPAYFKFLTVMSFYVFVKEKPDAVIMEVGIGGRYDNTNII 836
F + L + +F+ LT ++F +F +E D ++E G+GG D TN+I
Sbjct: 134 NDLFHGIKPILDEAIQLENGSLTHFEVLTALAFKLFAQENVDIAVIEAGLGGARDATNVI 193
Query: 837 PNT--AVVGITSLGYDHTAVLGNTIEEITMQKAGIMKPNCIAV 877
++ A IT++G +H A LG ++E I + K+GI+K V
Sbjct: 194 DSSGLAASVITTIGEEHLAALGGSLESIALAKSGIIKQGRPVV 236
|
Length = 510 |
| >gnl|CDD|182774 PRK10846, PRK10846, bifunctional folylpolyglutamate synthase/ dihydrofolate synthase; Provisional | Back alignment and domain information |
|---|
Score = 120 bits (304), Expect = 6e-29
Identities = 71/219 (32%), Positives = 110/219 (50%), Gaps = 22/219 (10%)
Query: 47 NKEIPQSYVDAIKQLNTLQSNIRTIRESKLRKDPVEMQAVQVDQVVQYLGHLNITLDDIK 106
NK+ PQ+ L+ L++ L +++ +V QV L L
Sbjct: 3 NKQTPQATSPLASWLSYLEN---------LHSKTIDLGLERVSQVAARLDLLK------P 47
Query: 107 KLNVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTK 166
V ++GT GKG+TC ESIL + G+ G +SSPHL+ ER+++ G+ + T
Sbjct: 48 APFVFTVAGTNGKGTTCRTLESILMAAGYRVGVYSSPHLVRYTERVRIQGQELPESAHTA 107
Query: 167 YFWTVYNALHAKRKHAEDMPAYFKFLTVMSFYVFVKEKPDAVIMEVGIGGRYDNTNIIPN 226
F + A R + YF++ T+ + ++F + + D VI+EVG+GGR D TNI+ +
Sbjct: 108 SF----AEIEAAR--GDISLTYFEYGTLSALWLFKQAQLDVVILEVGLGGRLDATNIV-D 160
Query: 227 TAVVGITSLGYDHTAVLGNTIEEITMQKAGIMKPNCIAV 265
V +TS+ DHT LG E I +KAGI + AV
Sbjct: 161 ADVAVVTSIALDHTDWLGPDRESIGREKAGIFRAEKPAV 199
|
Length = 416 |
| >gnl|CDD|182774 PRK10846, PRK10846, bifunctional folylpolyglutamate synthase/ dihydrofolate synthase; Provisional | Back alignment and domain information |
|---|
Score = 120 bits (304), Expect = 6e-29
Identities = 71/219 (32%), Positives = 110/219 (50%), Gaps = 22/219 (10%)
Query: 659 NKEIPQSYVDAIKQLNTLQSNIRTIRESKLRKDPVEMQAVQVDQVVQYLGHLNITLDDIK 718
NK+ PQ+ L+ L++ L +++ +V QV L L
Sbjct: 3 NKQTPQATSPLASWLSYLEN---------LHSKTIDLGLERVSQVAARLDLLK------P 47
Query: 719 KLNVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTK 778
V ++GT GKG+TC ESIL + G+ G +SSPHL+ ER+++ G+ + T
Sbjct: 48 APFVFTVAGTNGKGTTCRTLESILMAAGYRVGVYSSPHLVRYTERVRIQGQELPESAHTA 107
Query: 779 YFWTVYNALHAKRKHAEDMPAYFKFLTVMSFYVFVKEKPDAVIMEVGIGGRYDNTNIIPN 838
F + A R + YF++ T+ + ++F + + D VI+EVG+GGR D TNI+ +
Sbjct: 108 SF----AEIEAAR--GDISLTYFEYGTLSALWLFKQAQLDVVILEVGLGGRLDATNIV-D 160
Query: 839 TAVVGITSLGYDHTAVLGNTIEEITMQKAGIMKPNCIAV 877
V +TS+ DHT LG E I +KAGI + AV
Sbjct: 161 ADVAVVTSIALDHTDWLGPDRESIGREKAGIFRAEKPAV 199
|
Length = 416 |
| >gnl|CDD|215476 PLN02881, PLN02881, tetrahydrofolylpolyglutamate synthase | Back alignment and domain information |
|---|
Score = 82.0 bits (203), Expect = 8e-16
Identities = 60/275 (21%), Positives = 95/275 (34%), Gaps = 81/275 (29%)
Query: 409 RGIKACVWPGRVQVI--------RKNNFKYFLDGAHTTDSIELCAKWF---LRKSEAEAS 457
+G+ GR QV+ + ++LDGAH+ +S+E CA+WF ++ E
Sbjct: 302 KGLSTASLQGRAQVVPDSYINSEDSGDLVFYLDGAHSPESMEACARWFSSAIKGDEQSPG 361
Query: 458 SSRSVSSCPLDPTQSKSSNVIQRILVFNVTGERDPTKLLSPLL-----QSNQFEYILVTP 512
S ++S+ + ++IL+FN RDP LL PL F+ L P
Sbjct: 362 SGYGPHGGGGKSEDTESNKISEQILLFNCMSVRDPQLLLPPLANTCASNGVPFKKALFVP 421
Query: 513 NI-----LTNESSPDT-------QYGGNRTIDRFGVKLDSRTAAPNGGHEPGRPNVGQGG 560
NI + + D Q+ R +
Sbjct: 422 NISVYNKVGSGLPVDDPQVDLSWQFTLQRVWESL-------------------------- 455
Query: 561 GGFQSRSGDNSIRSNANPLSSVDCHNVNDQSNSFHKIATVASALSQ-----RSKVVEFSS 615
+ ++G + SS ++ NS V +L R E S
Sbjct: 456 --IRGKAGAPADAVCEESASSGL-NDGKSDENSA-----VFPSLPLAIKWLRDCARENPS 507
Query: 616 VLDTYNFKYGLDPSKEYHILVTGSLHLVGAFLNVL 650
+ + +LVTGSLHLVG L +L
Sbjct: 508 L--------------RFQVLVTGSLHLVGDVLRLL 528
|
Length = 530 |
| >gnl|CDD|215476 PLN02881, PLN02881, tetrahydrofolylpolyglutamate synthase | Back alignment and domain information |
|---|
Score = 67.4 bits (165), Expect = 2e-11
Identities = 32/123 (26%), Positives = 48/123 (39%), Gaps = 29/123 (23%)
Query: 1021 RGIKACVWPGRVQVI--------RKNNFKYFLDGAHTTDSIELCAKWF------------ 1060
+G+ GR QV+ + ++LDGAH+ +S+E CA+WF
Sbjct: 302 KGLSTASLQGRAQVVPDSYINSEDSGDLVFYLDGAHSPESMEACARWFSSAIKGDEQSPG 361
Query: 1061 ---LRKSEAEANPTQSKSSNVIQRILVFNVTGERDPTKLLSPLL-----QSNQFEYILVT 1112
+ + ++IL+FN RDP LL PL F+ L
Sbjct: 362 SGYGPHGGGGKSEDTESNKIS-EQILLFNCMSVRDPQLLLPPLANTCASNGVPFKKALFV 420
Query: 1113 PNI 1115
PNI
Sbjct: 421 PNI 423
|
Length = 530 |
| >gnl|CDD|215476 PLN02881, PLN02881, tetrahydrofolylpolyglutamate synthase | Back alignment and domain information |
|---|
Score = 61.2 bits (149), Expect = 2e-09
Identities = 32/132 (24%), Positives = 55/132 (41%), Gaps = 20/132 (15%)
Query: 1136 QSINISLAIQLAYLWMFRMNKSAELKRNQSS-LPMGPHFEIDPKTYRGIKACVWPGRVQV 1194
Q +N LA+ L W+ R Q+ LP F +G+ GR QV
Sbjct: 264 QYLNAGLAVALCSTWLQRTGHEEFEALLQAGTLP--EQF------IKGLSTASLQGRAQV 315
Query: 1195 I--------RKNNFKYFLDGAHTTDSIELCAKWF---LRKSEAEASSSRSVSSCPLDPTQ 1243
+ + ++LDGAH+ +S+E CA+WF ++ E S
Sbjct: 316 VPDSYINSEDSGDLVFYLDGAHSPESMEACARWFSSAIKGDEQSPGSGYGPHGGGGKSED 375
Query: 1244 SKSSNVIQRILV 1255
++S+ + ++IL+
Sbjct: 376 TESNKISEQILL 387
|
Length = 530 |
| >gnl|CDD|233440 TIGR01499, folC, folylpolyglutamate synthase/dihydrofolate synthase | Back alignment and domain information |
|---|
Score = 58.8 bits (143), Expect = 9e-09
Identities = 16/40 (40%), Positives = 26/40 (65%)
Query: 1181 RGIKACVWPGRVQVIRKNNFKYFLDGAHTTDSIELCAKWF 1220
+G+ +WPGR++++ ++N LDGAH S E A+WF
Sbjct: 260 KGLANTIWPGRLEILSEDNPNILLDGAHNPHSAEALAEWF 299
|
This model represents the FolC family of folate pathway proteins. Most examples are bifunctional, active as both folylpolyglutamate synthetase (EC 6.3.2.17) and dihydrofolate synthetase (EC 6.3.2.12). The two activities are similar - ATP + glutamate + dihydropteroate or tetrahydrofolyl-[Glu](n) = ADP + orthophosphate + dihydrofolate or tetrahydrofolyl-[Glu](n+1). A mutation study of the FolC gene of E. coli suggests that both activities belong to the same active site. Because some examples are monofunctional (and these cannot be separated phylogenetically), the model is treated as subfamily, not equivalog [Biosynthesis of cofactors, prosthetic groups, and carriers, Folic acid]. Length = 398 |
| >gnl|CDD|223362 COG0285, FolC, Folylpolyglutamate synthase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 53.4 bits (129), Expect = 5e-07
Identities = 27/102 (26%), Positives = 42/102 (41%), Gaps = 15/102 (14%)
Query: 1013 FEIDPKTYR-GIKACVWPGRVQVIRKNNFKYFLDGAHTTDSIELCAKWFLRKSEAEANPT 1071
EI + R G+ WPGR++ + +N LDGAH + A+ K+ P
Sbjct: 274 KEISEEAIRKGLANVDWPGRLERLSENP-LILLDGAHNPHAARALAETL--KTLFNDRPR 330
Query: 1072 QSKSSNVIQRILVFNVTGERDPTKLLSPLLQSNQFEYILVTP 1113
LVF + ++D +L+ LL + I TP
Sbjct: 331 ---------LTLVFGMLKDKDIAGMLAALLP--IVDEIYTTP 361
|
Length = 427 |
| >gnl|CDD|223362 COG0285, FolC, Folylpolyglutamate synthase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 45.7 bits (109), Expect = 1e-04
Identities = 26/113 (23%), Positives = 42/113 (37%), Gaps = 26/113 (23%)
Query: 401 FEIDPKTYR-GIKACVWPGRVQVIRKNNFKYFLDGAHTTDSIELCAKWFLRKSEAEASSS 459
EI + R G+ WPGR++ + +N LDGAH + A+ K+
Sbjct: 274 KEISEEAIRKGLANVDWPGRLERLSENP-LILLDGAHNPHAARALAETL--KTLFNDRP- 329
Query: 460 RSVSSCPLDPTQSKSSNVIQRILVFNVTGERDPTKLLSPLLQSNQFEYILVTP 512
+ LVF + ++D +L+ LL + I TP
Sbjct: 330 -------------------RLTLVFGMLKDKDIAGMLAALLP--IVDEIYTTP 361
|
Length = 427 |
| >gnl|CDD|223362 COG0285, FolC, Folylpolyglutamate synthase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 43.4 bits (103), Expect = 6e-04
Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Query: 1173 FEIDPKTYR-GIKACVWPGRVQVIRKNNFKYFLDGAHTTDSIELCAKWF 1220
EI + R G+ WPGR++ + +N LDGAH + A+
Sbjct: 274 KEISEEAIRKGLANVDWPGRLERLSENP-LILLDGAHNPHAARALAETL 321
|
Length = 427 |
| >gnl|CDD|217262 pfam02875, Mur_ligase_C, Mur ligase family, glutamate ligase domain | Back alignment and domain information |
|---|
Score = 39.3 bits (92), Expect = 8e-04
Identities = 22/98 (22%), Positives = 37/98 (37%), Gaps = 22/98 (22%)
Query: 1028 WPGRVQVIRK-NNFKYFLDGAHTTDSIE----LCAKWFLRKSEAEANPTQSKSSNVIQRI 1082
PGR++V+ + N D AH D++E F + + I
Sbjct: 1 VPGRLEVVGEGNGVLVIDDYAHNPDAMEAALRALRNLFPQG----------------RLI 44
Query: 1083 LVFNVTGERDPTKL-LSPLLQSNQFEYILVTPNILTNE 1119
LVF G+RD L L + + +++T + E
Sbjct: 45 LVFGAGGDRDAEFHALLGQLAAALADDVILTGDYPRAE 82
|
This family contains a number of related ligase enzymes which have EC numbers 6.3.2.*. This family includes: MurC, MurD, MurE, MurF, Mpl and FolC. MurC, MurD, Mure and MurF catalyze consecutive steps in the synthesis of peptidoglycan. Peptidoglycan consists of a sheet of two sugar derivatives, with one of these N-acetylmuramic acid attaching to a small pentapeptide. The pentapeptide is is made of L-alanine, D-glutamic acid, Meso-diaminopimelic acid and D-alanyl alanine. The peptide moiety is synthesised by successively adding these amino acids to UDP-N-acetylmuramic acid. MurC transfers the L-alanine, MurD transfers the D-glutamate, MurE transfers the diaminopimelic acid, and MurF transfers the D-alanyl alanine. This family also includes Folylpolyglutamate synthase that transfers glutamate to folylpolyglutamate. Length = 88 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1255 | |||
| KOG2525|consensus | 496 | 100.0 | ||
| PLN02881 | 530 | tetrahydrofolylpolyglutamate synthase | 100.0 | |
| PRK11929 | 958 | putative bifunctional UDP-N-acetylmuramoylalanyl-D | 100.0 | |
| KOG2525|consensus | 496 | 100.0 | ||
| PLN02881 | 530 | tetrahydrofolylpolyglutamate synthase | 100.0 | |
| COG0285 | 427 | FolC Folylpolyglutamate synthase [Coenzyme metabol | 100.0 | |
| PLN02913 | 510 | dihydrofolate synthetase | 100.0 | |
| COG0285 | 427 | FolC Folylpolyglutamate synthase [Coenzyme metabol | 100.0 | |
| TIGR01499 | 397 | folC folylpolyglutamate synthase/dihydrofolate syn | 100.0 | |
| PLN02913 | 510 | dihydrofolate synthetase | 100.0 | |
| PRK10846 | 416 | bifunctional folylpolyglutamate synthase/ dihydrof | 100.0 | |
| TIGR01499 | 397 | folC folylpolyglutamate synthase/dihydrofolate syn | 100.0 | |
| PRK10846 | 416 | bifunctional folylpolyglutamate synthase/ dihydrof | 100.0 | |
| PRK00139 | 460 | murE UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-d | 100.0 | |
| PRK14022 | 481 | UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine l | 100.0 | |
| PRK00139 | 460 | murE UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-d | 100.0 | |
| COG0769 | 475 | MurE UDP-N-acetylmuramyl tripeptide synthase [Cell | 100.0 | |
| TIGR01143 | 417 | murF UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-a | 100.0 | |
| TIGR01085 | 464 | murE UDP-N-acetylmuramyl-tripeptide synthetase. A | 100.0 | |
| PRK14022 | 481 | UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine l | 100.0 | |
| TIGR02068 | 864 | cya_phycin_syn cyanophycin synthetase. Cyanophycin | 100.0 | |
| PRK11929 | 958 | putative bifunctional UDP-N-acetylmuramoylalanyl-D | 100.0 | |
| TIGR01143 | 417 | murF UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-a | 100.0 | |
| PRK14093 | 479 | UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminop | 100.0 | |
| TIGR01085 | 464 | murE UDP-N-acetylmuramyl-tripeptide synthetase. A | 100.0 | |
| PRK10773 | 453 | murF UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-a | 100.0 | |
| COG0770 | 451 | MurF UDP-N-acetylmuramyl pentapeptide synthase [Ce | 100.0 | |
| TIGR02068 | 864 | cya_phycin_syn cyanophycin synthetase. Cyanophycin | 100.0 | |
| PRK11930 | 822 | putative bifunctional UDP-N-acetylmuramoyl-tripept | 100.0 | |
| PRK14093 | 479 | UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminop | 100.0 | |
| PRK01438 | 480 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 100.0 | |
| PRK10773 | 453 | murF UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-a | 100.0 | |
| PRK01390 | 460 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 100.0 | |
| COG0769 | 475 | MurE UDP-N-acetylmuramyl tripeptide synthase [Cell | 100.0 | |
| PRK01438 | 480 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 100.0 | |
| PRK11930 | 822 | putative bifunctional UDP-N-acetylmuramoyl-tripept | 100.0 | |
| PRK00421 | 461 | murC UDP-N-acetylmuramate--L-alanine ligase; Provi | 100.0 | |
| PRK02705 | 459 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 100.0 | |
| PRK03803 | 448 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 100.0 | |
| PRK03369 | 488 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 100.0 | |
| PRK04308 | 445 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 100.0 | |
| PRK03806 | 438 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 100.0 | |
| PRK01390 | 460 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 100.0 | |
| PRK03803 | 448 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 100.0 | |
| PRK02705 | 459 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 100.0 | |
| PRK14106 | 450 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 100.0 | |
| PRK04690 | 468 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 100.0 | |
| TIGR01087 | 433 | murD UDP-N-acetylmuramoylalanine--D-glutamate liga | 100.0 | |
| PRK00421 | 461 | murC UDP-N-acetylmuramate--L-alanine ligase; Provi | 100.0 | |
| PRK02472 | 447 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 99.98 | |
| PRK04308 | 445 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 99.98 | |
| PRK02006 | 498 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 99.98 | |
| PRK02006 | 498 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 99.98 | |
| PRK03806 | 438 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 99.98 | |
| PRK00141 | 473 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 99.98 | |
| PRK14106 | 450 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 99.98 | |
| TIGR01081 | 448 | mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl | 99.98 | |
| PRK03369 | 488 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 99.98 | |
| TIGR01081 | 448 | mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl | 99.97 | |
| TIGR01082 | 448 | murC UDP-N-acetylmuramate--alanine ligase. UDP-N-a | 99.97 | |
| TIGR01087 | 433 | murD UDP-N-acetylmuramoylalanine--D-glutamate liga | 99.97 | |
| PRK01368 | 454 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 99.97 | |
| PRK00141 | 473 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 99.97 | |
| PRK02472 | 447 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 99.97 | |
| PRK04690 | 468 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 99.97 | |
| TIGR01082 | 448 | murC UDP-N-acetylmuramate--alanine ligase. UDP-N-a | 99.97 | |
| PRK04663 | 438 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 99.97 | |
| COG0770 | 451 | MurF UDP-N-acetylmuramyl pentapeptide synthase [Ce | 99.97 | |
| COG0771 | 448 | MurD UDP-N-acetylmuramoylalanine-D-glutamate ligas | 99.97 | |
| PRK14573 | 809 | bifunctional D-alanyl-alanine synthetase A/UDP-N-a | 99.97 | |
| PRK01368 | 454 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 99.96 | |
| PRK01710 | 458 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 99.96 | |
| PRK00683 | 418 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 99.96 | |
| COG0771 | 448 | MurD UDP-N-acetylmuramoylalanine-D-glutamate ligas | 99.95 | |
| COG0773 | 459 | MurC UDP-N-acetylmuramate-alanine ligase [Cell env | 99.95 | |
| PRK04663 | 438 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 99.95 | |
| PRK14573 | 809 | bifunctional D-alanyl-alanine synthetase A/UDP-N-a | 99.95 | |
| PRK01710 | 458 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 99.95 | |
| PRK00683 | 418 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 99.95 | |
| COG0773 | 459 | MurC UDP-N-acetylmuramate-alanine ligase [Cell env | 99.94 | |
| PRK03815 | 401 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 99.91 | |
| PRK14016 | 727 | cyanophycin synthetase; Provisional | 99.87 | |
| PRK14016 | 727 | cyanophycin synthetase; Provisional | 99.87 | |
| PRK03815 | 401 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 99.87 | |
| PF08245 | 188 | Mur_ligase_M: Mur ligase middle domain; InterPro: | 99.86 | |
| PF08245 | 188 | Mur_ligase_M: Mur ligase middle domain; InterPro: | 99.85 | |
| PF02875 | 91 | Mur_ligase_C: Mur ligase family, glutamate ligase | 99.32 | |
| PF02875 | 91 | Mur_ligase_C: Mur ligase family, glutamate ligase | 99.22 | |
| COG1703 | 323 | ArgK Putative periplasmic protein kinase ArgK and | 96.98 | |
| COG1703 | 323 | ArgK Putative periplasmic protein kinase ArgK and | 96.95 | |
| PF03308 | 266 | ArgK: ArgK protein; InterPro: IPR005129 Bacterial | 95.09 | |
| TIGR00750 | 300 | lao LAO/AO transport system ATPase. Mutations have | 93.76 | |
| PF03308 | 266 | ArgK: ArgK protein; InterPro: IPR005129 Bacterial | 93.65 | |
| TIGR00750 | 300 | lao LAO/AO transport system ATPase. Mutations have | 92.41 | |
| TIGR03172 | 232 | probable selenium-dependent hydroxylase accessory | 92.24 | |
| PRK09435 | 332 | membrane ATPase/protein kinase; Provisional | 91.61 | |
| PRK01077 | 451 | cobyrinic acid a,c-diamide synthase; Validated | 91.0 | |
| PRK13705 | 388 | plasmid-partitioning protein SopA; Provisional | 87.87 | |
| PRK09435 | 332 | membrane ATPase/protein kinase; Provisional | 87.56 | |
| PRK01077 | 451 | cobyrinic acid a,c-diamide synthase; Validated | 87.3 | |
| PHA02519 | 387 | plasmid partition protein SopA; Reviewed | 85.86 | |
| TIGR00379 | 449 | cobB cobyrinic acid a,c-diamide synthase. This mod | 85.3 | |
| COG0489 | 265 | Mrp ATPases involved in chromosome partitioning [C | 84.31 | |
| PRK13705 | 388 | plasmid-partitioning protein SopA; Provisional | 83.69 | |
| cd03114 | 148 | ArgK-like The function of this protein family is u | 82.81 | |
| cd03114 | 148 | ArgK-like The function of this protein family is u | 82.34 | |
| PRK05632 | 684 | phosphate acetyltransferase; Reviewed | 80.99 | |
| PHA02519 | 387 | plasmid partition protein SopA; Reviewed | 80.93 | |
| PRK00784 | 488 | cobyric acid synthase; Provisional | 80.42 |
| >KOG2525|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-89 Score=786.55 Aligned_cols=471 Identities=39% Similarity=0.642 Sum_probs=397.6
Q ss_pred CCCCCCcHHHHHHHHHhcchhHHHHHhhhcCCCcccccccchHHHHHHHHHhcCCccCCCCccEEEEcCCCChhHHHHHH
Q psy15432 47 NKEIPQSYVDAIKQLNTLQSNIRTIRESKLRKDPVEMQAVQVDQVVQYLGHLNITLDDIKKLNVIHISGTKGKGSTCAYC 126 (1255)
Q Consensus 47 ~~~~~~~y~eai~~L~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~Lg~~~~~~~~l~vIhVtGTnGKgST~a~l 126 (1255)
.....++|++|+++||+||+|+++|+.+++.++. .+..++++|++||++||+| .|+++|++|||||||||||||+|+
T Consensus 14 ~~~~~~~~~~~v~~lnsLqsn~~~i~~~~~~~~~--~~~~~l~~m~~~L~~lg~p-~d~~~l~iIHVAGTkGKGStcaF~ 90 (496)
T KOG2525|consen 14 STISSKTYEDAVRYLNSLQSNAALIEKLRRQDDN--PQGLTLPRMRKLLERLGNP-EDQNSLNIIHVAGTKGKGSTCAFT 90 (496)
T ss_pred ccccchhHHHHHHHHHHHHhHHHhhhhhhhccCC--ccccCHHHHHHHHHHhCCh-hhhhheeEEEEecCCCCcchHHHH
Confidence 3456788999999999999999999988876653 3568999999999999999 788999999999999999999999
Q ss_pred HHHHHHCCCCeEEEcCCcccccceeEEeCCeecChhhhhhHHHHHHHHHHhhhhccCCcchHHHHHHHHhhhhhhccCCC
Q psy15432 127 ESILRSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTKYFWTVYNALHAKRKHAEDMPAYFKFLTVMSFYVFVKEKPD 206 (1255)
Q Consensus 127 ~sIL~~~G~k~Gl~tSPhL~~~rERI~InG~~is~~~ft~~~~~v~~~l~~~~~~~~~~p~~Fe~Lt~~A~~~F~~~~vD 206 (1255)
++||+++|+|||+||||||+++||||+|||+|||++.|++|||+||+++++....+..+|+||+|||++||++|.+++||
T Consensus 91 ~SILr~~g~rtG~yTSPHLl~vrErIriNGqpIS~e~F~~~f~~v~~~lk~~~~~~~~~p~yF~fLT~lAF~~F~~enVd 170 (496)
T KOG2525|consen 91 ESILRQQGLRTGFYTSPHLLSVRERIRINGQPISEEKFTKYFWEVYERLKSTKLKEVSMPTYFEFLTLLAFHVFVKENVD 170 (496)
T ss_pred HHHHHhcccccccccChhhcchhheEEECCEECCHHHHHHHHHHHHHHHHHhhccccCCCchhhhhHhhhheeeeecCCc
Confidence 99999999999999999999999999999999999999999999999999998888899999999999999999999999
Q ss_pred EEEEeeccCCccccccccCCccEEEEcCCCcchhhhcCCCHHHHHHHHHcccCCCceeeeccCCCchHHHHHHHhhhccC
Q psy15432 207 AVIMEVGIGGRYDNTNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIMKPNCIAVTSANQRGPCKQILLETSRALN 286 (1255)
Q Consensus 207 ~aVlEvG~GGr~D~tnii~~P~v~vITnIg~DHld~lG~Tle~Ia~~KagI~k~g~~~v~~~~q~~e~~~vl~~~a~~~~ 286 (1255)
+||+|||+||++|+||+|.+|.+|+||+||+||+++||+|+++|||+||||||.|+|+++++ |+++++++|+++|.+.+
T Consensus 171 vaViEvGlGG~~DaTNvI~kpvvcgITslG~DH~~~LG~tL~eIA~eKAGIfK~gvpaft~~-q~~e~~nvL~~ra~e~~ 249 (496)
T KOG2525|consen 171 VAVIEVGLGGELDATNVIEKPVVCGITSLGLDHTSFLGNTLSEIAWEKAGIFKEGVPAFTVP-QPPEALNVLKERASELG 249 (496)
T ss_pred EEEEEeccccccccccccccceEEEEeecCCchHHHHhhHHHHHHHHhccccccCCceEEcC-CcHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999 99999999999999999
Q ss_pred ceEEEcCCcceeeecCcccccCCCchhHHhhHHHHHHHHHHHHHhhccchhhhhHHHHhhhhhccCCCCCCCCCCCCCCc
Q psy15432 287 CVLLEAPSILNYRWRGQPLDEDWKSTVQSINISLAIQLAYLWMFRMNKSAELKSVIDKFLAEMRVSSPNETPGGQGHLSS 366 (1255)
Q Consensus 287 ~~l~~~~~~~~~~~~~~~i~l~l~G~~q~~Na~lAia~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (1255)
++++.+++.+.+...+. .+++.|.||..|+++|+.++.+|+.+.+...
T Consensus 250 ~~L~~v~p~~~~~ls~~--~lgl~g~hq~~na~lA~~L~~~~~~~~~~~~------------------------------ 297 (496)
T KOG2525|consen 250 VPLFVVPPLEAYELSGV--NLGLIGTHQWSNASLAVQLASEWLIQNGRVA------------------------------ 297 (496)
T ss_pred CCceecCCchhhhhcCC--cccccccchhhhhHHHHHHHHHHHHhcCccc------------------------------
Confidence 99999998776655544 3899999999999999999999975532100
Q ss_pred cCCCCCCCCccccCCCCCCCCccccccccCCCCCCCChHHHHHHHhcCCCCCceEEEEe-cCcEEEEccCCCHHHHHHHH
Q psy15432 367 CETPGGQGHLSFSETPGGQGHLTGNQSSLLMGPHFEIDPKTYRGIKACVWPGRVQVIRK-NNFKYFLDGAHTTDSIELCA 445 (1255)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~e~i~~gL~~~~~pGR~e~v~~-~~~~vilDgAHnp~si~~~l 445 (1255)
.. . ...... -++ +++++..||+++.||||+|++.. ++.+|++|||||++||++|.
T Consensus 298 -------------~~-----~--~~~~~~---~~~-i~~~~l~GL~~~~wPGR~qil~~~~~~~~llDGAHt~eSaea~~ 353 (496)
T KOG2525|consen 298 -------------EG-----V--LDALQT---SGL-IPPAFLSGLASTDWPGRLQILEYGRGVTWLLDGAHTKESAEACA 353 (496)
T ss_pred -------------cc-----C--CCcccc---ccC-CCHHHhcchhhccCCCceEEEecCCCcEEEecCCCCHHHHHHHH
Confidence 00 0 000000 011 47888999999999999999998 67889999999999999999
Q ss_pred HHHHhhhhcccccCccCCCCCCCCCccCCCCCccEEEEEecCCCCChhhhhHHhhc----cCCCcEEEEcCCCCCCCCCC
Q psy15432 446 KWFLRKSEAEASSSRSVSSCPLDPTQSKSSNVIQRILVFNVTGERDPTKLLSPLLQ----SNQFEYILVTPNILTNESSP 521 (1255)
Q Consensus 446 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilVfg~~~drD~~~ll~~L~~----~~~~d~vi~t~~~~~~~~~~ 521 (1255)
+||++...+... ..-+|++|+|+++||+..+++.|.. ...|+.|+|+|+....+..
T Consensus 354 ~w~~~~~~~~~~-------------------~~~~illfn~t~~~d~~~Ll~~L~~~~~~~~~F~~Vvf~Pni~~~~~~- 413 (496)
T KOG2525|consen 354 KWFRKAVRGLKK-------------------LTSLILLFNCTSDRDPPLLLPLLKPDAVIGTRFSSVVFMPNITSSSPV- 413 (496)
T ss_pred HHHHHHhccCCC-------------------ccceEEEEEecCCcchHhHhHHhccccccccccceEEecccccccCCc-
Confidence 999985433200 0127999999999999999988832 3679999999999887652
Q ss_pred CCcCCCCcccccccccccccCCCCCCCCCCCCCCCCCCCCCcccCCCCCcccCCCCCCCcccccccccccchhhHHHHHH
Q psy15432 522 DTQYGGNRTIDRFGVKLDSRTAAPNGGHEPGRPNVGQGGGGFQSRSGDNSIRSNANPLSSVDCHNVNDQSNSFHKIATVA 601 (1255)
Q Consensus 522 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 601 (1255)
... | .++++++.+ ..++.| ..+..+|
T Consensus 414 ~~~--------------d-----------------------------~~~~~~s~~-------~~l~~q----~~L~~~w 439 (496)
T KOG2525|consen 414 GSA--------------D-----------------------------SISLNTSTE-------EQLNWQ----NDLQSVW 439 (496)
T ss_pred cch--------------h-----------------------------hhhccCCch-------HHHHHh----HHHHHHH
Confidence 111 0 112222221 122334 4477778
Q ss_pred hhccC-----CCcEEEcCCHHHHHHHHhccCCCCCceEEEecccccccccceeecc
Q psy15432 602 SALSQ-----RSKVVEFSSVLDTYNFKYGLDPSKEYHILVTGSLHLVGAFLNVLIT 652 (1255)
Q Consensus 602 ~~~~~-----~~~~~~~~si~~ai~~~~~~~~~~~~~vlvtGSlhLVGgvL~~l~~ 652 (1255)
..+.. .....||+++.+|+++++... .+...++||||+|||||+|.++..
T Consensus 440 ~~l~~~~~~~~~~~~V~~sL~~a~~~Lr~~~-~~s~~~~V~gslhlvg~vl~~l~~ 494 (496)
T KOG2525|consen 440 EELKESEGKTEDPSIVFGSLYLAYELLRDDQ-HLSPRIEVLGSLHLVGGVLVLLDR 494 (496)
T ss_pred HHHhhcCCCceeeeeEeccHHHHHHHHHhcC-CCCCeEEEEEEEEEechHhhhhhc
Confidence 77744 236789999999999999974 455599999999999999988764
|
|
| >PLN02881 tetrahydrofolylpolyglutamate synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-86 Score=787.05 Aligned_cols=472 Identities=35% Similarity=0.585 Sum_probs=378.6
Q ss_pred CCCCcHHHHHHHHHhcchhHHHHHhhhcCCCcccccccchHHHHHHHHHhcCCccCCCCccEEEEcCCCChhHHHHHHHH
Q psy15432 49 EIPQSYVDAIKQLNTLQSNIRTIRESKLRKDPVEMQAVQVDQVVQYLGHLNITLDDIKKLNVIHISGTKGKGSTCAYCES 128 (1255)
Q Consensus 49 ~~~~~y~eai~~L~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~Lg~~~~~~~~l~vIhVtGTnGKgST~a~l~s 128 (1255)
...++|++|+++|++||++... ....+ . .+++++|+++|++||+|+ +..++++|||||||||||||+|+++
T Consensus 11 ~~~~~y~~a~~~L~sl~~~~~~---~~~~~-~----~~~L~rm~~~L~~LG~p~-~~~~l~vIhVaGTnGKGSt~a~l~s 81 (530)
T PLN02881 11 PTSDSYEEALDALSSLITKKSR---ADPSN-P----GDQFDLLFDYLKILELEE-AISRLKVIHVAGTKGKGSTCTFTES 81 (530)
T ss_pred ccccCHHHHHHHHHhcccchhh---ccccc-c----CCChHHHHHHHHHcCCCc-hhhcCCEEEEeCCCCHHHHHHHHHH
Confidence 4568899999999999988431 11111 1 279999999999999984 4568899999999999999999999
Q ss_pred HHHHCCCCeEEEcCCcccccceeEEeCCeecChhhhhhHHHHHHHHHHhhhhccCCcchHHHHHHHHhhhhhhccCCCEE
Q psy15432 129 ILRSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTKYFWTVYNALHAKRKHAEDMPAYFKFLTVMSFYVFVKEKPDAV 208 (1255)
Q Consensus 129 IL~~~G~k~Gl~tSPhL~~~rERI~InG~~is~~~ft~~~~~v~~~l~~~~~~~~~~p~~Fe~Lt~~A~~~F~~~~vD~a 208 (1255)
||+++|+|||+||||||.++||||+|||+||+++.|+++||+||++++.........|+|||++|+|||++|.+++||++
T Consensus 82 iL~~~G~rvGl~tSPhL~~~rERiring~~Is~e~f~~~f~~v~~~l~~~~~~~~~~pt~Fe~lTlla~~~F~~~~vD~a 161 (530)
T PLN02881 82 ILRNCGFRTGLFTSPHLIDVRERFRLDGVDISEEKFLRYFWWCWDRLKEKTTEDLPMPAYFRFLTLLAFKIFSAEQVDVA 161 (530)
T ss_pred HHHHCCCCEEEECCCccCcceeEEEECCEecCHHHHHHHHHHHHHHHHHhcccccCCCcHHHHHHHHHHHHHHhCCCCEE
Confidence 99999999999999999999999999999999999999999999999976433334699999999999999999999999
Q ss_pred EEeeccCCccccccccCCccEEEEcCCCcchhhhcCCCHHHHHHHHHcccCCCceeeeccCCCchHHHHHHHhhhccCce
Q psy15432 209 IMEVGIGGRYDNTNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIMKPNCIAVTSANQRGPCKQILLETSRALNCV 288 (1255)
Q Consensus 209 VlEvG~GGr~D~tnii~~P~v~vITnIg~DHld~lG~Tle~Ia~~KagI~k~g~~~v~~~~q~~e~~~vl~~~a~~~~~~ 288 (1255)
|||||+|||+|+||++.+|+++|||||++||+++||+|+++||++|+||||+|.|+|+++ |+++++++|+++|++++++
T Consensus 162 VlEvGlgGr~DaTnvi~~p~v~vITnIg~DH~~~LG~Tle~IA~~KagI~k~g~p~vt~~-q~~ea~~vl~~~A~e~~a~ 240 (530)
T PLN02881 162 ILEVGLGGRLDATNVVQKPVVCGITSLGYDHMEILGDTLGKIAGEKAGIFKPGVPAFTVP-QPDEAMRVLEERASELGVP 240 (530)
T ss_pred EEEecCCCCchhhhccCCCCEEEEccccHHHHHhhcCCHHHHHHHHHHHHhcCCCEEEeC-CChHHHHHHHHHHHHhCCc
Confidence 999999999999999989999999999999999999999999999999999999999998 8899999999999999999
Q ss_pred EEEcCCcceeeecCcccccCCCchhHHhhHHHHHHHHHHHHHhhccchhhhhHHHHhhhhhccCCCCCCCCCCCCCCccC
Q psy15432 289 LLEAPSILNYRWRGQPLDEDWKSTVQSINISLAIQLAYLWMFRMNKSAELKSVIDKFLAEMRVSSPNETPGGQGHLSSCE 368 (1255)
Q Consensus 289 l~~~~~~~~~~~~~~~i~l~l~G~~q~~Na~lAia~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (1255)
++.++....+.+ ..+.++|.|.||..||++|++++..++++.+... .+.
T Consensus 241 l~~v~~~~~~~~--~~~~l~L~G~~Q~~NaalAla~~~~~l~~~~~~~----------------~~~------------- 289 (530)
T PLN02881 241 LQVVEPLDSYGL--SGLKLGLAGEHQYLNAGLAVALCSTWLQRTGHEE----------------FEA------------- 289 (530)
T ss_pred EEEeccccccee--cccCCCCCChhHHHhHHHHHHHHHHHHhhccccc----------------ccc-------------
Confidence 998875433332 2467899999999999999999999865432100 000
Q ss_pred CCCCCCCccccCCCCCCCCccccccccCCCCCCCChHHHHHHHhcCCCCCceEEEEe--------cCcEEEEccCCCHHH
Q psy15432 369 TPGGQGHLSFSETPGGQGHLTGNQSSLLMGPHFEIDPKTYRGIKACVWPGRVQVIRK--------NNFKYFLDGAHTTDS 440 (1255)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~e~i~~gL~~~~~pGR~e~v~~--------~~~~vilDgAHnp~s 440 (1255)
. .....+++.+++||++++||||||++.. +++.|||||||||+|
T Consensus 290 --------------------------~--~~~~~l~~~i~~GL~~~~wpGR~e~v~~~~~~~~~~~~~~~~LDGAHNp~s 341 (530)
T PLN02881 290 --------------------------L--LQAGTLPEQFIKGLSTASLQGRAQVVPDSYINSEDSGDLVFYLDGAHSPES 341 (530)
T ss_pred --------------------------c--cccCCCHHHHHHHHHhCCCCceEEEeccccccccCCCCCeEEEECCCCHHH
Confidence 0 0011237799999999999999999975 456899999999999
Q ss_pred HHHHHHHHHhhhhcccccCccCCCCCCCCCcc--------CCCCCccEEEEEecCCCCChhhhhHHhhc-----cCCCcE
Q psy15432 441 IELCAKWFLRKSEAEASSSRSVSSCPLDPTQS--------KSSNVIQRILVFNVTGERDPTKLLSPLLQ-----SNQFEY 507 (1255)
Q Consensus 441 i~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~ilVfg~~~drD~~~ll~~L~~-----~~~~d~ 507 (1255)
+++|.+||........ ..+...++++. ..+...++++||||++|||+..||+.|.. ...||+
T Consensus 342 ~~~l~~wf~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~ilvF~~~~dkD~~~lL~~L~~~~~~~~~~f~~ 416 (530)
T PLN02881 342 MEACARWFSSAIKGDE-----QSPGSGYGPHGGGGKSEDTESNKISEQILLFNCMSVRDPQLLLPPLANTCASNGVPFKK 416 (530)
T ss_pred HHHHHHHHHHHhcccc-----cCCcccccccccccccccccccCCCCEEEEEcCCCCCCHHHHHHHHHHHHHhcCCCCCe
Confidence 9999999987543110 00000011110 01122478999999999999999999962 356999
Q ss_pred EEEcCCCCCCCCCCCCcCCCCcccccccccccccCCCCCCCCCCCCCCCCCCCCCcccCCCCCcccCCCCCCCccccccc
Q psy15432 508 ILVTPNILTNESSPDTQYGGNRTIDRFGVKLDSRTAAPNGGHEPGRPNVGQGGGGFQSRSGDNSIRSNANPLSSVDCHNV 587 (1255)
Q Consensus 508 vi~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 587 (1255)
+|||||.+..... .+. +.+. ++.. .+
T Consensus 417 aiF~~n~~~~~~~---~~~----------------------------------------------~~~~---~~~~--~l 442 (530)
T PLN02881 417 ALFVPNISVYNKV---GSG----------------------------------------------LPVD---DPQV--DL 442 (530)
T ss_pred EEEcCCccccCCC---ccc----------------------------------------------CCCc---chhh--hH
Confidence 9999999774431 110 0001 1111 12
Q ss_pred ccccchhhHHHHHHhhcc--C-C---------------------CcEEEcCCHHHHHHHHhccCC---CCCceEEEeccc
Q psy15432 588 NDQSNSFHKIATVASALS--Q-R---------------------SKVVEFSSVLDTYNFKYGLDP---SKEYHILVTGSL 640 (1255)
Q Consensus 588 ~~~~~~~~~~~~~~~~~~--~-~---------------------~~~~~~~si~~ai~~~~~~~~---~~~~~vlvtGSl 640 (1255)
..| +.+++.|+.+. + . .++.||++|++||++++.... +..++|||||||
T Consensus 443 ~~q----~~l~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~si~~Ai~~~r~~~~~~~~~~~~vlVTGSl 518 (530)
T PLN02881 443 SWQ----FTLQRVWESLIRGKAGAPADAVCEESASSGLNDGKSDENSAVFPSLPLAIKWLRDCARENPSLRFQVLVTGSL 518 (530)
T ss_pred HHH----HHHHHHHHHhccccccccccccccccccccccCCCCCCceeEecCHHHHHHHHHHHhhhCCCcceEEEEecch
Confidence 235 56999999994 1 1 489999999999999999863 125799999999
Q ss_pred ccccccceeecc
Q psy15432 641 HLVGAFLNVLIT 652 (1255)
Q Consensus 641 hLVGgvL~~l~~ 652 (1255)
|||||+|.++.+
T Consensus 519 hLvG~~l~~l~~ 530 (530)
T PLN02881 519 HLVGDVLRLLKK 530 (530)
T ss_pred hhhhHHHHHhcC
Confidence 999999988753
|
|
| >PRK11929 putative bifunctional UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-84 Score=834.47 Aligned_cols=820 Identities=16% Similarity=0.142 Sum_probs=561.4
Q ss_pred eccccccccccccCCCceeEeecccccCCcccccccCCCCCCCcHHH-HHHHHHhcchhHHHHHhhhcCCCcccccccch
Q psy15432 10 KELKLNKDAHRKTLPDKTEVHHGGYKHGAVTPHASRSNKEIPQSYVD-AIKQLNTLQSNIRTIRESKLRKDPVEMQAVQV 88 (1255)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~e-ai~~L~~l~~~~~~~~~~~~~~~~~~~~~~~l 88 (1255)
.++..+..+||++.|+.+||+++|.+.+++.|+.+...++...-.-+ ... ... .. .+.+ .+.|
T Consensus 27 ~~~~~i~~DSR~v~~g~lFval~G~~~dGh~fi~~A~~~GA~~~v~~~~~~--~~~---------~~-~~~~----~i~V 90 (958)
T PRK11929 27 AATADLRLDSREVQPGDLFVACRGAASDGRAFIDQALARGAAAVLVEAEGE--DQV---------AA-ADAL----VLPV 90 (958)
T ss_pred cccceeeeeccCCCCCCEEEEeCCCCCCHHHHHHHHHHcCCEEEEEecccc--ccc---------cC-CCCe----EEEE
Confidence 46778889999999999999999999999998776665543221111 000 000 00 0111 2678
Q ss_pred HHHHHHHHHhcCCccCCC--CccEEEEcCCCChhHHHHHHHHHHHHCCCCeEEEcCCcccccceeEEeCCeecChhhhhh
Q psy15432 89 DQVVQYLGHLNITLDDIK--KLNVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTK 166 (1255)
Q Consensus 89 ~~~~~~L~~Lg~~~~~~~--~l~vIhVtGTnGKgST~a~l~sIL~~~G~k~Gl~tSPhL~~~rERI~InG~~is~~~ft~ 166 (1255)
++++++|+.|+..+++.+ ++++||||||||||||++|+++||+++|+++|+++|.. .++++..+... +
T Consensus 91 ~d~~~al~~la~~~~~~p~~~~~vI~ITGTnGKTTT~~~l~~iL~~~g~~~~~~g~~~-------~~i~~~~i~~~-~-- 160 (958)
T PRK11929 91 ADLRKALGELAARWYGRPSEQLSLVAVTGTNGKTSCAQLLAQLLTRLGKPCGSIGTLG-------ARLDGRLIPGS-L-- 160 (958)
T ss_pred CCHHHHHHHHHHHHHhChhhccEEEEEECCCccHHHHHHHHHHHHHcCCCEEEECCcc-------ccCCCeeeecC-C--
Confidence 999999999987555554 78999999999999999999999999999999999864 33455544411 1
Q ss_pred HHHHHHHHHHhhhhccCCcchHHHHHHHHhhhhhhccCCCEEEEeecc----CCccccccccCCccEEEEcCCCcchhhh
Q psy15432 167 YFWTVYNALHAKRKHAEDMPAYFKFLTVMSFYVFVKEKPDAVIMEVGI----GGRYDNTNIIPNTAVVGITSLGYDHTAV 242 (1255)
Q Consensus 167 ~~~~v~~~l~~~~~~~~~~p~~Fe~Lt~~A~~~F~~~~vD~aVlEvG~----GGr~D~tnii~~P~v~vITnIg~DHld~ 242 (1255)
..|.++++.++ |..|.+.++|++|||+|+ +||+|++| |+++|||||+.||+++
T Consensus 161 -----------------t~~~~~~~~~~--l~~~~~~~~~~~VlE~ss~~l~~~rl~~~~----p~iaviTnI~~dHl~~ 217 (958)
T PRK11929 161 -----------------TTPDAIILHRI--LARMRAAGADAVAMEASSHGLEQGRLDGLR----IAVAGFTNLTRDHLDY 217 (958)
T ss_pred -----------------CCCCHHHHHHH--HHHHHHCCCCEEEEEeccchHhhCcccccc----cCEEEEeCCCcccccc
Confidence 12344444333 245688999999999985 37888864 5999999999999999
Q ss_pred cCCCHHHHHHHHHcccC---CCceeeeccCCCchHHHHHHHhhhccCceEEEcCCcc--------------eeeec----
Q psy15432 243 LGNTIEEITMQKAGIMK---PNCIAVTSANQRGPCKQILLETSRALNCVLLEAPSIL--------------NYRWR---- 301 (1255)
Q Consensus 243 lG~Tle~Ia~~KagI~k---~g~~~v~~~~q~~e~~~vl~~~a~~~~~~l~~~~~~~--------------~~~~~---- 301 (1255)
|| |+|+|+.+|++||+ ++.++|++. +++.+..++...+....+..+...... .+.+.
T Consensus 218 ~g-t~e~i~~~K~~i~~~~~~~~~~Vln~-dd~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 295 (958)
T PRK11929 218 HG-TMQDYEEAKAALFSKLPGLGAAVINA-DDPAAARLLAALPRGLKVGYSPQNAGADVQARDLRATAHGQVFTLATPDG 295 (958)
T ss_pred CC-CHHHHHHHHHHHhcCCccCCeEEEEC-CCHHHHHHHHHcCCCceEEEEeeCCCccEEEEEEEEcCCceEEEEEeCCc
Confidence 99 99999999999997 677888887 566555544432222122222211100 11111
Q ss_pred CcccccCCCchhHHhhHHHHHHHHHHHHHhhccchhhhhHHHHhhhhhccCCCCCCCCCCCCCCccCCCCCCCCccccCC
Q psy15432 302 GQPLDEDWKSTVQSINISLAIQLAYLWMFRMNKSAELKSVIDKFLAEMRVSSPNETPGGQGHLSSCETPGGQGHLSFSET 381 (1255)
Q Consensus 302 ~~~i~l~l~G~~q~~Na~lAia~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (1255)
...+.++++|.||++|+++|++++..+
T Consensus 296 ~~~~~l~l~G~hnv~NalaAia~a~~l----------------------------------------------------- 322 (958)
T PRK11929 296 SYQLVTRLLGRFNVSNLLLVAAALKKL----------------------------------------------------- 322 (958)
T ss_pred eEEEEecCccHhhHHHHHHHHHHHHHc-----------------------------------------------------
Confidence 123678999999999999999988765
Q ss_pred CCCCCCccccccccCCCCCCCChHHHHHHHhcCC-CCCceEEEE----ecCcEEEEccCCCHHHHHHHHHHHHhhhhccc
Q psy15432 382 PGGQGHLTGNQSSLLMGPHFEIDPKTYRGIKACV-WPGRVQVIR----KNNFKYFLDGAHTTDSIELCAKWFLRKSEAEA 456 (1255)
Q Consensus 382 ~~~~~~~~~~~~~l~~~~~~~l~e~i~~gL~~~~-~pGR~e~v~----~~~~~vilDgAHnp~si~~~l~~l~~~~~~~~ 456 (1255)
|++ +++|.+||++++ ||||||++. .+++.+|+||||||+|+++++++++......
T Consensus 323 ------------------gi~-~~~I~~~L~~~~~~~gR~e~i~~~~~~~~~~vi~DyahnP~s~~a~l~~l~~~~~~~- 382 (958)
T PRK11929 323 ------------------GLP-LAQIARALAAVSPVPGRMERVGPTAGAQGPLVVVDYAHTPDALAKALTALRPVAQAR- 382 (958)
T ss_pred ------------------CCC-HHHHHHHHhcCCCCCCCcEEeccccCCCCCEEEEECCCCHHHHHHHHHHHHHhcccC-
Confidence 667 899999999998 999999994 3567899999999999999999998532100
Q ss_pred ccCccCCCCCCCCCccCCCCCccEEEEEecCCCCC--hhhhhHHhhccCCCcEEEEcCCCCCCCCCCCCcCCCCcccccc
Q psy15432 457 SSSRSVSSCPLDPTQSKSSNVIQRILVFNVTGERD--PTKLLSPLLQSNQFEYILVTPNILTNESSPDTQYGGNRTIDRF 534 (1255)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~~~~~~ilVfg~~~drD--~~~ll~~L~~~~~~d~vi~t~~~~~~~~~~~~~~~~~~~~~~~ 534 (1255)
..++++|||++++|| ++.++..+ +...+|.||+|+++++.++|...... +. .
T Consensus 383 --------------------~~r~i~V~g~g~~r~~~~~~~~~~~-~~~~~d~vi~t~~~pr~e~p~~i~~~----i~-~ 436 (958)
T PRK11929 383 --------------------NGRLVCVFGCGGDRDKGKRPEMGRI-AAELADRVVVTSDNPRSEAPEAIIDQ----IL-A 436 (958)
T ss_pred --------------------CCcEEEEECCCCCCCcchhHHHHHH-HHHhCCEEEEcCCCCCCCCHHHHHHH----HH-h
Confidence 126899999998876 55666666 44568999999999988875322210 00 0
Q ss_pred cccccccCCCCCCCCCCCCCCCCCCCCCcccCCCCCcccCCCCCCCcccccccccccchhhHHHHHHhhccC--------
Q psy15432 535 GVKLDSRTAAPNGGHEPGRPNVGQGGGGFQSRSGDNSIRSNANPLSSVDCHNVNDQSNSFHKIATVASALSQ-------- 606 (1255)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 606 (1255)
|+.. .. .+ . ..++.+ +.+..+.+...+
T Consensus 437 ~~~~--------------~~-------~~-------~------~~~d~~-----------~Ai~~a~~~a~~gD~VLv~G 471 (958)
T PRK11929 437 GIPA--------------GA-------RV-------F------VISDRA-----------EAIRQAIWMAAPGDVILIAG 471 (958)
T ss_pred hccC--------------CC-------ce-------E------EECCHH-----------HHHHHHHHhcCCCCEEEEee
Confidence 0000 00 00 0 000000 112111111111
Q ss_pred ---------CCcEEEcCCHHHHHHHHhccC----------------C----CCCceEEEecccccccccceeeccCCCCC
Q psy15432 607 ---------RSKVVEFSSVLDTYNFKYGLD----------------P----SKEYHILVTGSLHLVGAFLNVLITPHASR 657 (1255)
Q Consensus 607 ---------~~~~~~~~si~~ai~~~~~~~----------------~----~~~~~vlvtGSlhLVGgvL~~l~~~ha~~ 657 (1255)
..+...|+|++++.+.+...- + .....=+.+.|+.+..|-|++...+..+.
T Consensus 472 sG~e~~~~~~~~~~~f~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~dSr~v~~g~lFval~G~~~d 551 (958)
T PRK11929 472 KGHETYQEIGGRKLFFDDREWARRALLARISSTLIKLRAAKGGSNSLQINSLPHAGAVSTDSRSVGRGELFVALRGENFD 551 (958)
T ss_pred cCcchheEECCEecCCCHHHHHHHHHHhhhcccccchhhhcCcccccccccCcccCeEEeeCCccCCCCEEEEecCCCCC
Confidence 124556788887766654321 0 01223367788888888888888766433
Q ss_pred CCCCCcccHHHHHHHHHhcchhHHHHHHhhccCCcccccccchHHHHHHHHHhcCcccccccceEEEecCCCCCccHHHH
Q psy15432 658 SNKEIPQSYVDAIKQLNTLQSNIRTIRESKLRKDPVEMQAVQVDQVVQYLGHLNITLDDIKKLNVIHISGTKGKGSTCAY 737 (1255)
Q Consensus 658 ~~~~~~~~y~~a~~~L~~lqsn~~~l~~~~~~g~~~~~~~~~v~~~~~~L~~Lg~~~~~~~~l~vIhVTGTnGKgST~am 737 (1255)
. .+++...-.+++..--+.+.-...+.+.+.|++++++|+.|+..++...+.++|+||||||||||++|
T Consensus 552 G-----------h~fi~~A~~~GA~~~i~~~~~~~~~~~~i~V~d~~~al~~la~~~~~~~~~~vI~VTGTnGKTTT~~m 620 (958)
T PRK11929 552 G-----------HDYLPQAFAAGACAAVVERQVADVDLPQIVVDDTRAALGRLATAWRARFSLPVVAITGSNGKTTTKEM 620 (958)
T ss_pred H-----------HHHHHHHHHcCCEEEEECCCccCCCCCEEEeCCHHHHHHHHHHHHHhcCCCcEEEEeCCCchHHHHHH
Confidence 3 33333322222110000000000012347899999999999988877667899999999999999999
Q ss_pred HHHHHHHCCCCeEEEcCcccccccceeeeCCeecChhhhhhHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHHhhhcCCC
Q psy15432 738 CESILRSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTKYFWTVYNALHAKRKHAEDMPAYFKFLTVMSFYVFVKEKP 817 (1255)
Q Consensus 738 l~sILr~~G~rtGl~tSPhL~~~~ERI~InG~pIs~~~f~~~~~~v~~~l~~~~~~~~~~pt~Fe~lT~mAf~~F~~~~v 817 (1255)
+++||+.+|.+.+.+.+++ ++|..+ |.|++ ++ -.+.++
T Consensus 621 l~~iL~~~~~~~~~~~t~g--n~n~~~---g~~~~---------------------------------l~----~~~~~~ 658 (958)
T PRK11929 621 IAAILAAWQGEDRVLATEG--NFNNEI---GVPLT---------------------------------LL----RLRAQH 658 (958)
T ss_pred HHHHHHhcCCCCcEEccCc--ccCCCc---chHHH---------------------------------Hh----cCCCCC
Confidence 9999999987777777776 444433 43321 00 035678
Q ss_pred CEEEEecccC--CccccccccCCCcEEEEcCCCchhhhhcCCCHHHHHHHHhcccc---CCceEEEccCCCChhHHHHHH
Q psy15432 818 DAVIMEVGIG--GRYDNTNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIMK---PNCIAVTSANQRGPCKQILLE 892 (1255)
Q Consensus 818 D~aVlEVG~G--Gr~D~TNvi~~P~VavITnIg~DHl~~LG~TleeIA~~KagI~K---~g~~av~~~~qd~~~~~vl~~ 892 (1255)
|++|+|+|++ |.++.+.-+.+|+++|||||+.||+++|| |+|+|+.+|+.||+ +++.+|++. |++....+..
T Consensus 659 ~~~VlE~s~~~~g~~~~~~~~~~pdiaViTNI~~dHLd~~~-s~e~y~~aK~~i~~~~~~~~~~Vln~--Dd~~~~~~~~ 735 (958)
T PRK11929 659 RAAVFELGMNHPGEIAYLAAIAAPTVALVTNAQREHQEFMH-SVEAVARAKGEIIAALPEDGVAVVNG--DDPYTAIWAK 735 (958)
T ss_pred cEEEEEeCCCCCccHHHHhCccCCCEEEEcCCcHHHhhhcC-CHHHHHHHHHHHHccCCCCCEEEEEC--CcHHHHHHHH
Confidence 9999999998 67777655557999999999999999999 89999999999994 567888886 4544444444
Q ss_pred HhhhcCCeEEEcC--Cc---------c----------cee--cc--CCccccCCCchhHHHHHHHHHHHHHHHHHhhcch
Q psy15432 893 TSRALNCVLLEAP--SI---------L----------NYR--WR--GQPLDEDWKSTVQSINISLAIQLAYLWMFRMNKS 947 (1255)
Q Consensus 893 ~A~~~~~~l~~~~--~~---------~----------~~~--~~--~~~v~l~L~G~hq~~Na~lAiala~~~l~~~~~~ 947 (1255)
.+... .++.++ .. . .+. .. ...+.++++|.||++|+++|++++..
T Consensus 736 ~~~~~--~~~~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~hnv~NalaAia~a~~-------- 805 (958)
T PRK11929 736 LAGAR--RVLRFGLQPGADVYAEKIAKDISVGEAGGTRCQVVTPAGSAEVYLPLIGEHNLRNALAAIACALA-------- 805 (958)
T ss_pred hhcCC--cEEEEeCCCCcceEeeecccceeecCCCceEEEEEECCceEEEEeCCCcHHHHHHHHHHHHHHHH--------
Confidence 33221 122221 00 0 010 01 12457899999999999999998875
Q ss_pred hhhhhHHHHHhhhhhcCCCCCCCCCCCCCCcCCCCCCCCCccccCCCCCCCCcccccccccCCCCCCCC-HHHHHHHhcC
Q psy15432 948 AELKSVIDKFLAEMRVSSPNETPGGQGHLSSCETPGGQGHLSFSETPGGQGHLTGNQSSLLMGPHFEID-PKTYRGIKAC 1026 (1255)
Q Consensus 948 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~i~-~~i~~gL~~~ 1026 (1255)
+|++ +++.++|+++
T Consensus 806 -----------------------------------------------------------------lGi~~~~i~~~L~~f 820 (958)
T PRK11929 806 -----------------------------------------------------------------AGASLKQIRAGLERF 820 (958)
T ss_pred -----------------------------------------------------------------cCCCHHHHHHHHhhC
Confidence 4566 6799999999
Q ss_pred C-CCCcEEEEee-cCcEEEEE-cCcCHHHHHHHHHHHHhhhccccCCCcccCCCCCcEEEEEecCCC-CChhhhhhhhh-
Q psy15432 1027 V-WPGRVQVIRK-NNFKYFLD-GAHTTDSIELCAKWFLRKSEAEANPTQSKSSNVIQRILVFNVTGE-RDPTKLLSPLL- 1101 (1255)
Q Consensus 1027 ~-~pGR~E~v~~-~~~~vilD-gAHNP~S~~a~l~~l~~~~~~~~~~~~~~~~~~~~~vlVfg~~~d-rD~~~ll~~L~- 1101 (1255)
+ +|||||++.. ++..+|+| |||||+|++++++.++... ..++++|||+|++ +|..+.....|
T Consensus 821 ~~~~gR~e~~~~~~~~~iidDsya~np~s~~aaL~~l~~~~-------------~~~~i~VlG~~~e~g~~~~~~h~~~g 887 (958)
T PRK11929 821 QPVAGRMQRRRLSCGTRIIDDTYNANPDSMRAAIDVLAELP-------------NGPRALVLGDMLELGDNGPAMHREVG 887 (958)
T ss_pred CCCCCCceEEEcCCCcEEEEcCCCCCHHHHHHHHHHHHhcc-------------CCCEEEEECCchhcCcHHHHHHHHHH
Confidence 9 9999999975 56778888 9999999999999998642 1368999999987 56655433211
Q ss_pred ---cCCCCcEEEEcCCCCcccccccCCCCCcccccccccccCCHHHHHHHHHHHcCCCceEEeecCCCCCCccccccc
Q psy15432 1102 ---QSNQFEYILVTPNILTNEIRWRGQPLDEDWKSTVQSINISLAIQLAYLWMFRMNKSAELKRNQSSLPMGPHFEID 1176 (1255)
Q Consensus 1102 ---~~~~~d~vi~t~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 1176 (1255)
.....+.|++.++.+...... +.........+.++.++.+.....+.+++|+||||++.|+++.+.+
T Consensus 888 ~~~~~~~~~~vi~~Ge~~~~i~~~--------~~~~~~~~~~~~~~a~~~~~~~~~~gD~VLlkGSr~~~le~~~~~~ 957 (958)
T PRK11929 888 KYARQLGIDALITLGEAARDAAAA--------FGAGARGVCASVDEIIAALRGALPEGDSVLIKGSRFMRLERVVDAL 957 (958)
T ss_pred HHHHHcCCCEEEEECcCHHHHHHh--------hhcccceeeCCHHHHHHHHHHhcCCCCEEEEEeCccCcHHHHHHhh
Confidence 344578888887655332111 1111112356899999999999999999999999999999988765
|
|
| >KOG2525|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-85 Score=750.49 Aligned_cols=451 Identities=39% Similarity=0.632 Sum_probs=382.0
Q ss_pred CCcccHHHHHHHHHhcchhHHHHHHhhccCCcccccccchHHHHHHHHHhcCcccccccceEEEecCCCCCccHHHHHHH
Q psy15432 661 EIPQSYVDAIKQLNTLQSNIRTIRESKLRKDPVEMQAVQVDQVVQYLGHLNITLDDIKKLNVIHISGTKGKGSTCAYCES 740 (1255)
Q Consensus 661 ~~~~~y~~a~~~L~~lqsn~~~l~~~~~~g~~~~~~~~~v~~~~~~L~~Lg~~~~~~~~l~vIhVTGTnGKgST~aml~s 740 (1255)
...++|++|+.+||+||+|.+++++.++.++. .+..++++|+++|+++|+| +|++++++|||||||||||||+|+++
T Consensus 16 ~~~~~~~~~v~~lnsLqsn~~~i~~~~~~~~~--~~~~~l~~m~~~L~~lg~p-~d~~~l~iIHVAGTkGKGStcaF~~S 92 (496)
T KOG2525|consen 16 ISSKTYEDAVRYLNSLQSNAALIEKLRRQDDN--PQGLTLPRMRKLLERLGNP-EDQNSLNIIHVAGTKGKGSTCAFTES 92 (496)
T ss_pred ccchhHHHHHHHHHHHHhHHHhhhhhhhccCC--ccccCHHHHHHHHHHhCCh-hhhhheeEEEEecCCCCcchHHHHHH
Confidence 34578999999999999999999988874421 1347999999999999999 78899999999999999999999999
Q ss_pred HHHHCCCCeEEEcCcccccccceeeeCCeecChhhhhhHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHHhhhcCCCCEE
Q psy15432 741 ILRSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTKYFWTVYNALHAKRKHAEDMPAYFKFLTVMSFYVFVKEKPDAV 820 (1255)
Q Consensus 741 ILr~~G~rtGl~tSPhL~~~~ERI~InG~pIs~~~f~~~~~~v~~~l~~~~~~~~~~pt~Fe~lT~mAf~~F~~~~vD~a 820 (1255)
|||+.|+|||+||||||+++||||+|||+|||++.|+++||+||++++.....+..||+||+|||++||++|.+++||+|
T Consensus 93 ILr~~g~rtG~yTSPHLl~vrErIriNGqpIS~e~F~~~f~~v~~~lk~~~~~~~~~p~yF~fLT~lAF~~F~~enVdva 172 (496)
T KOG2525|consen 93 ILRQQGLRTGFYTSPHLLSVRERIRINGQPISEEKFTKYFWEVYERLKSTKLKEVSMPTYFEFLTLLAFHVFVKENVDVA 172 (496)
T ss_pred HHHhcccccccccChhhcchhheEEECCEECCHHHHHHHHHHHHHHHHHhhccccCCCchhhhhHhhhheeeeecCCcEE
Confidence 99999999999999999999999999999999999999999999999999888899999999999999999999999999
Q ss_pred EEecccCCccccccccCCCcEEEEcCCCchhhhhcCCCHHHHHHHHhccccCCceEEEccCCCChhHHHHHHHhhhcCCe
Q psy15432 821 IMEVGIGGRYDNTNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIMKPNCIAVTSANQRGPCKQILLETSRALNCV 900 (1255)
Q Consensus 821 VlEVG~GGr~D~TNvi~~P~VavITnIg~DHl~~LG~TleeIA~~KagI~K~g~~av~~~~qd~~~~~vl~~~A~~~~~~ 900 (1255)
|||||+||++|+||+|.+|.+|+||+||+||+++||+|+++|||+||||||.|+|+|+.+ |+++++++++++|.+.+++
T Consensus 173 ViEvGlGG~~DaTNvI~kpvvcgITslG~DH~~~LG~tL~eIA~eKAGIfK~gvpaft~~-q~~e~~nvL~~ra~e~~~~ 251 (496)
T KOG2525|consen 173 VIEVGLGGELDATNVIEKPVVCGITSLGLDHTSFLGNTLSEIAWEKAGIFKEGVPAFTVP-QPPEALNVLKERASELGVP 251 (496)
T ss_pred EEEeccccccccccccccceEEEEeecCCchHHHHhhHHHHHHHHhccccccCCceEEcC-CcHHHHHHHHHHHHhcCCC
Confidence 999999999999999999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred EEEcCCccceeccCCccccCCCchhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHhhhhhcCCCCCCCCCCCCCCcCC
Q psy15432 901 LLEAPSILNYRWRGQPLDEDWKSTVQSINISLAIQLAYLWMFRMNKSAELKSVIDKFLAEMRVSSPNETPGGQGHLSSCE 980 (1255)
Q Consensus 901 l~~~~~~~~~~~~~~~v~l~L~G~hq~~Na~lAiala~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 980 (1255)
++++++.+.+...+. .+++.|.||..|+.+|++++..|+...+... + +
T Consensus 252 L~~v~p~~~~~ls~~--~lgl~g~hq~~na~lA~~L~~~~~~~~~~~~------------~------------~------ 299 (496)
T KOG2525|consen 252 LFVVPPLEAYELSGV--NLGLIGTHQWSNASLAVQLASEWLIQNGRVA------------E------------G------ 299 (496)
T ss_pred ceecCCchhhhhcCC--cccccccchhhhhHHHHHHHHHHHHhcCccc------------c------------c------
Confidence 999999877666554 3899999999999999999999886532100 0 0
Q ss_pred CCCCCCCccccCCCCCCCCcccccccccCCCCCCCCHHHHHHHhcCCCCCcEEEEee-cCcEEEEEcCcCHHHHHHHHHH
Q psy15432 981 TPGGQGHLSFSETPGGQGHLTGNQSSLLMGPHFEIDPKTYRGIKACVWPGRVQVIRK-NNFKYFLDGAHTTDSIELCAKW 1059 (1255)
Q Consensus 981 ~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~i~~~i~~gL~~~~~pGR~E~v~~-~~~~vilDgAHNP~S~~a~l~~ 1059 (1255)
.|+ .... ..+ +|+.+..||+++.||||+|++.. ++++|++||||||+||++|.+|
T Consensus 300 ~~~----------------------~~~~-~~~-i~~~~l~GL~~~~wPGR~qil~~~~~~~~llDGAHt~eSaea~~~w 355 (496)
T KOG2525|consen 300 VLD----------------------ALQT-SGL-IPPAFLSGLASTDWPGRLQILEYGRGVTWLLDGAHTKESAEACAKW 355 (496)
T ss_pred CCC----------------------cccc-ccC-CCHHHhcchhhccCCCceEEEecCCCcEEEecCCCCHHHHHHHHHH
Confidence 000 0000 012 78899999999999999999998 5788999999999999999999
Q ss_pred HHhhhccccCCCcccCCCCCcEEEEEecCCCCChhhhhhhhhcC-----CCCcEEEEcCCCCcccccccCCCCCcccccc
Q psy15432 1060 FLRKSEAEANPTQSKSSNVIQRILVFNVTGERDPTKLLSPLLQS-----NQFEYILVTPNILTNEIRWRGQPLDEDWKST 1134 (1255)
Q Consensus 1060 l~~~~~~~~~~~~~~~~~~~~~vlVfg~~~drD~~~ll~~L~~~-----~~~d~vi~t~~~~~~~~~~~~~~~~~~~~~d 1134 (1255)
|+...... . ....+|++|+|+++||+..++..| .+ ..|+.|+|+|+......... .|
T Consensus 356 ~~~~~~~~--~------~~~~~illfn~t~~~d~~~Ll~~L-~~~~~~~~~F~~Vvf~Pni~~~~~~~~---------~d 417 (496)
T KOG2525|consen 356 FRKAVRGL--K------KLTSLILLFNCTSDRDPPLLLPLL-KPDAVIGTRFSSVVFMPNITSSSPVGS---------AD 417 (496)
T ss_pred HHHHhccC--C------CccceEEEEEecCCcchHhHhHHh-ccccccccccceEEecccccccCCccc---------hh
Confidence 99733211 0 111279999999999999999888 55 78999999999988876554 55
Q ss_pred cccccCCH------HHHHHHHHHHcCCCceEEeecCCCCCCcccccccccccccccc-cccCCcceee
Q psy15432 1135 VQSINISL------AIQLAYLWMFRMNKSAELKRNQSSLPMGPHFEIDPKTYRGIKA-CVWPGRVQVI 1195 (1255)
Q Consensus 1135 ~~~~~~~~------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~ 1195 (1255)
..+.+.+. +..+++.|+.+.+.. ...-.-..||.+|..+|+-+.. |--+-|+||+
T Consensus 418 ~~~~~~s~~~~l~~q~~L~~~w~~l~~~~------~~~~~~~~V~~sL~~a~~~Lr~~~~~s~~~~V~ 479 (496)
T KOG2525|consen 418 SISLNTSTEEQLNWQNDLQSVWEELKESE------GKTEDPSIVFGSLYLAYELLRDDQHLSPRIEVL 479 (496)
T ss_pred hhhccCCchHHHHHhHHHHHHHHHHhhcC------CCceeeeeEeccHHHHHHHHHhcCCCCCeEEEE
Confidence 66665554 457888999888744 1111222577888877764333 4445577776
|
|
| >PLN02881 tetrahydrofolylpolyglutamate synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-76 Score=705.21 Aligned_cols=464 Identities=34% Similarity=0.585 Sum_probs=360.3
Q ss_pred CCcccHHHHHHHHHhcchhHHHHHHhhccCCcccccccchHHHHHHHHHhcCcccccccceEEEecCCCCCccHHHHHHH
Q psy15432 661 EIPQSYVDAIKQLNTLQSNIRTIRESKLRKDPVEMQAVQVDQVVQYLGHLNITLDDIKKLNVIHISGTKGKGSTCAYCES 740 (1255)
Q Consensus 661 ~~~~~y~~a~~~L~~lqsn~~~l~~~~~~g~~~~~~~~~v~~~~~~L~~Lg~~~~~~~~l~vIhVTGTnGKgST~aml~s 740 (1255)
...++|++|+++|++++++.+ +....+. .+++++|+++|++||+|+ +.+++++|||||||||||||+|+++
T Consensus 11 ~~~~~y~~a~~~L~sl~~~~~---~~~~~~~-----~~~L~rm~~~L~~LG~p~-~~~~l~vIhVaGTnGKGSt~a~l~s 81 (530)
T PLN02881 11 PTSDSYEEALDALSSLITKKS---RADPSNP-----GDQFDLLFDYLKILELEE-AISRLKVIHVAGTKGKGSTCTFTES 81 (530)
T ss_pred ccccCHHHHHHHHHhcccchh---hcccccc-----CCChHHHHHHHHHcCCCc-hhhcCCEEEEeCCCCHHHHHHHHHH
Confidence 345789999999999998842 1111122 279999999999999984 4567899999999999999999999
Q ss_pred HHHHCCCCeEEEcCcccccccceeeeCCeecChhhhhhHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHHhhhcCCCCEE
Q psy15432 741 ILRSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTKYFWTVYNALHAKRKHAEDMPAYFKFLTVMSFYVFVKEKPDAV 820 (1255)
Q Consensus 741 ILr~~G~rtGl~tSPhL~~~~ERI~InG~pIs~~~f~~~~~~v~~~l~~~~~~~~~~pt~Fe~lT~mAf~~F~~~~vD~a 820 (1255)
||+++|+|||+||||||+++||||+|||+||+++.|+++||+||++++........+|+|||++|+|||++|.+++||++
T Consensus 82 iL~~~G~rvGl~tSPhL~~~rERiring~~Is~e~f~~~f~~v~~~l~~~~~~~~~~pt~Fe~lTlla~~~F~~~~vD~a 161 (530)
T PLN02881 82 ILRNCGFRTGLFTSPHLIDVRERFRLDGVDISEEKFLRYFWWCWDRLKEKTTEDLPMPAYFRFLTLLAFKIFSAEQVDVA 161 (530)
T ss_pred HHHHCCCCEEEECCCccCcceeEEEECCEecCHHHHHHHHHHHHHHHHHhcccccCCCcHHHHHHHHHHHHHHhCCCCEE
Confidence 99999999999999999999999999999999999999999999999976433345699999999999999999999999
Q ss_pred EEecccCCccccccccCCCcEEEEcCCCchhhhhcCCCHHHHHHHHhccccCCceEEEccCCCChhHHHHHHHhhhcCCe
Q psy15432 821 IMEVGIGGRYDNTNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIMKPNCIAVTSANQRGPCKQILLETSRALNCV 900 (1255)
Q Consensus 821 VlEVG~GGr~D~TNvi~~P~VavITnIg~DHl~~LG~TleeIA~~KagI~K~g~~av~~~~qd~~~~~vl~~~A~~~~~~ 900 (1255)
|||||+||++|+||++.+|+++|||||++||+++||+|+++||++|+||||+|.|+|+.+ |+++++++++++|++++++
T Consensus 162 VlEvGlgGr~DaTnvi~~p~v~vITnIg~DH~~~LG~Tle~IA~~KagI~k~g~p~vt~~-q~~ea~~vl~~~A~e~~a~ 240 (530)
T PLN02881 162 ILEVGLGGRLDATNVVQKPVVCGITSLGYDHMEILGDTLGKIAGEKAGIFKPGVPAFTVP-QPDEAMRVLEERASELGVP 240 (530)
T ss_pred EEEecCCCCchhhhccCCCCEEEEccccHHHHHhhcCCHHHHHHHHHHHHhcCCCEEEeC-CChHHHHHHHHHHHHhCCc
Confidence 999999999999999989999999999999999999999999999999999999999998 8899999999999999999
Q ss_pred EEEcCCccceeccCCccccCCCchhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHhhhhhcCCCCCCCCCCCCCCcCC
Q psy15432 901 LLEAPSILNYRWRGQPLDEDWKSTVQSINISLAIQLAYLWMFRMNKSAELKSVIDKFLAEMRVSSPNETPGGQGHLSSCE 980 (1255)
Q Consensus 901 l~~~~~~~~~~~~~~~v~l~L~G~hq~~Na~lAiala~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 980 (1255)
+++++....+.+ ..+.++|.|.||..||++|++++..|+.+.+... .+..
T Consensus 241 l~~v~~~~~~~~--~~~~l~L~G~~Q~~NaalAla~~~~~l~~~~~~~--------------------~~~~-------- 290 (530)
T PLN02881 241 LQVVEPLDSYGL--SGLKLGLAGEHQYLNAGLAVALCSTWLQRTGHEE--------------------FEAL-------- 290 (530)
T ss_pred EEEeccccccee--cccCCCCCChhHHHhHHHHHHHHHHHHhhccccc--------------------cccc--------
Confidence 998875443333 2467899999999999999999999875431100 0000
Q ss_pred CCCCCCCccccCCCCCCCCcccccccccCCCCCCCCHHHHHHHhcCCCCCcEEEEee--------cCcEEEEEcCcCHHH
Q psy15432 981 TPGGQGHLSFSETPGGQGHLTGNQSSLLMGPHFEIDPKTYRGIKACVWPGRVQVIRK--------NNFKYFLDGAHTTDS 1052 (1255)
Q Consensus 981 ~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~i~~~i~~gL~~~~~pGR~E~v~~--------~~~~vilDgAHNP~S 1052 (1255)
.....+++.+.+||+++.||||||++.. ++..|||||||||+|
T Consensus 291 -----------------------------~~~~~l~~~i~~GL~~~~wpGR~e~v~~~~~~~~~~~~~~~~LDGAHNp~s 341 (530)
T PLN02881 291 -----------------------------LQAGTLPEQFIKGLSTASLQGRAQVVPDSYINSEDSGDLVFYLDGAHSPES 341 (530)
T ss_pred -----------------------------cccCCCHHHHHHHHHhCCCCceEEEeccccccccCCCCCeEEEECCCCHHH
Confidence 0002345789999999999999999976 456899999999999
Q ss_pred HHHHHHHHHhhhcccc-CCCccc-------------CCCCCcEEEEEecCCCCChhhhhhhhhc-----CCCCcEEEEcC
Q psy15432 1053 IELCAKWFLRKSEAEA-NPTQSK-------------SSNVIQRILVFNVTGERDPTKLLSPLLQ-----SNQFEYILVTP 1113 (1255)
Q Consensus 1053 ~~a~l~~l~~~~~~~~-~~~~~~-------------~~~~~~~vlVfg~~~drD~~~ll~~L~~-----~~~~d~vi~t~ 1113 (1255)
|++|.+||........ .+..++ .+...++++||||++|||+..||+.|.. ...||+++|||
T Consensus 342 ~~~l~~wf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilvF~~~~dkD~~~lL~~L~~~~~~~~~~f~~aiF~~ 421 (530)
T PLN02881 342 MEACARWFSSAIKGDEQSPGSGYGPHGGGGKSEDTESNKISEQILLFNCMSVRDPQLLLPPLANTCASNGVPFKKALFVP 421 (530)
T ss_pred HHHHHHHHHHHhcccccCCcccccccccccccccccccCCCCEEEEEcCCCCCCHHHHHHHHHHHHHhcCCCCCeEEEcC
Confidence 9999999976432110 000000 0122468999999999999999998862 35699999999
Q ss_pred CCCcccccccCCCCCcccccccccccCCHHHHHHHHHHHcCC--CceEEe------ecC-----CCCCCccccccccccc
Q psy15432 1114 NILTNEIRWRGQPLDEDWKSTVQSINISLAIQLAYLWMFRMN--KSAELK------RNQ-----SSLPMGPHFEIDPKTY 1180 (1255)
Q Consensus 1114 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~--~~~~l~------~~~-----~~~~~~~~~~~~~~~~ 1180 (1255)
|.+.........+ .....-..+++..+++.|..+.. ...+.| +++ .......||.++..++
T Consensus 422 n~~~~~~~~~~~~------~~~~~~~l~~q~~l~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~si~~Ai 495 (530)
T PLN02881 422 NISVYNKVGSGLP------VDDPQVDLSWQFTLQRVWESLIRGKAGAPADAVCEESASSGLNDGKSDENSAVFPSLPLAI 495 (530)
T ss_pred CccccCCCcccCC------CcchhhhHHHHHHHHHHHHHhccccccccccccccccccccccCCCCCCceeEecCHHHHH
Confidence 9965443211000 11112235777899999999963 222221 111 1222346677777666
Q ss_pred ccccccccCC---cceeeecCc
Q psy15432 1181 RGIKACVWPG---RVQVIRKNN 1199 (1255)
Q Consensus 1181 ~g~~~~~~~~---~~~~~~~~~ 1199 (1255)
.-+..|.-+. |+|++--|-
T Consensus 496 ~~~r~~~~~~~~~~~~vlVTGS 517 (530)
T PLN02881 496 KWLRDCARENPSLRFQVLVTGS 517 (530)
T ss_pred HHHHHHhhhCCCcceEEEEecc
Confidence 5444443322 456655443
|
|
| >COG0285 FolC Folylpolyglutamate synthase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-75 Score=684.49 Aligned_cols=410 Identities=30% Similarity=0.431 Sum_probs=335.4
Q ss_pred CcHHHHHHHHHhcchhHHHHHhhhcCCCcccccccchHHHHHHHHHhcCCccCCCCccEEEEcCCCChhHHHHHHHHHHH
Q psy15432 52 QSYVDAIKQLNTLQSNIRTIRESKLRKDPVEMQAVQVDQVVQYLGHLNITLDDIKKLNVIHISGTKGKGSTCAYCESILR 131 (1255)
Q Consensus 52 ~~y~eai~~L~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~Lg~~~~~~~~l~vIhVtGTnGKgST~a~l~sIL~ 131 (1255)
++|+++.+||..+. .....+ ...++|+||.++|++||+|+ +++++|||+|||||||||+|+++||+
T Consensus 2 ~~~~~~~~wl~~l~-------~~~~~~----~i~~gL~Ri~~ll~~LGnP~---~~~~vIhVaGTNGKGSt~afl~siL~ 67 (427)
T COG0285 2 MSLQELAEWLHYLE-------QLHPKP----GIDLGLERISRLLERLGNPQ---KSPPVIHVAGTNGKGSTCAFLESILR 67 (427)
T ss_pred cchHHHHHHHHHHH-------hcCCCC----cccCChHHHHHHHHHcCCcc---ccCCeEEEeCCCCchhHHHHHHHHHH
Confidence 56777777776543 222222 12368999999999999998 78999999999999999999999999
Q ss_pred HCCCCeEEEcCCcccccceeEEeCCeecChhhhhhHHHHHHHHHHhhhhccCCcchHHHHHHHHhhhhhhccCCCEEEEe
Q psy15432 132 SHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTKYFWTVYNALHAKRKHAEDMPAYFKFLTVMSFYVFVKEKPDAVIME 211 (1255)
Q Consensus 132 ~~G~k~Gl~tSPhL~~~rERI~InG~~is~~~ft~~~~~v~~~l~~~~~~~~~~p~~Fe~Lt~~A~~~F~~~~vD~aVlE 211 (1255)
++|||||.||||||.+++|||+|||++||+++++.++++|.+...... ...|||||++|+|||+||.+.+||++|||
T Consensus 68 ~aG~~VG~yTSPHL~~~~ERI~ing~~Isd~~~~~~~~~ve~~~~~~~---~~~~T~FE~~Ta~Af~~F~~~~vD~aIlE 144 (427)
T COG0285 68 EAGYKVGVYTSPHLLSFNERIRINGEPISDEELAAAFERVEEAAGSLD---LISLTYFEVLTAMAFLYFAEAKVDVAILE 144 (427)
T ss_pred HcCCCceEECCCccCccceEEEECCEECCHHHHHHHHHHHHHHhcccc---cCCCcHHHHHHHHHHHHHHhCCCCEEEEe
Confidence 999999999999999999999999999999999999987666554332 36799999999999999999999999999
Q ss_pred eccCCccccccccCCccEEEEcCCCcchhhhcCCCHHHHHHHHHcccCCCceeeeccCCCchHHHHHHHhhhccCceEEE
Q psy15432 212 VGIGGRYDNTNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIMKPNCIAVTSANQRGPCKQILLETSRALNCVLLE 291 (1255)
Q Consensus 212 vG~GGr~D~tnii~~P~v~vITnIg~DHld~lG~Tle~Ia~~KagI~k~g~~~v~~~~q~~e~~~vl~~~a~~~~~~l~~ 291 (1255)
||+|||+|+||+|. |.++|||||++||+++||+|+++||++||||||+|.|+|+...+.|+++.+++++|.+++++++.
T Consensus 145 VGLGGRlDATNVi~-p~vsvIT~I~lDH~~~LG~tie~IA~EKAGI~k~g~P~v~~~~~~p~a~~vi~~~a~~~~~~~~~ 223 (427)
T COG0285 145 VGLGGRLDATNVIE-PDVSVITSIGLDHTAFLGDTLESIAREKAGIIKAGKPAVIGEQQPPEALNVIAERAEELGAPLFV 223 (427)
T ss_pred ccccccccchhccC-CceEEEcccChhHHHHhCCcHHHHHHHhhhhccCCCcEEECCCCCHHHHHHHHHHHHhcCCCeee
Confidence 99999999999996 99999999999999999999999999999999999999998856688999999999999999877
Q ss_pred cCCc-------ceeeecC----cccccCCCchh-HHhhHHHHHHHHHHHHHhhccchhhhhHHHHhhhhhccCCCCCCCC
Q psy15432 292 APSI-------LNYRWRG----QPLDEDWKSTV-QSINISLAIQLAYLWMFRMNKSAELKSVIDKFLAEMRVSSPNETPG 359 (1255)
Q Consensus 292 ~~~~-------~~~~~~~----~~i~l~l~G~~-q~~Na~lAia~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (1255)
.+.. ..+.+.+ ..+.+++.|.| |..||++|++++..+-
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~lp~l~~~~Q~~NAa~Ai~al~~l~------------------------------ 273 (427)
T COG0285 224 LGPDFQVLEEGNGFSFQGGGGLLDLPLPLLGGHHQIENAALAIAALEALG------------------------------ 273 (427)
T ss_pred cccchhhccccceEEEecCCeeeeeccccccchhHHHHHHHHHHHHHHhc------------------------------
Confidence 6421 1233332 25778988887 9999999999887760
Q ss_pred CCCCCCccCCCCCCCCccccCCCCCCCCccccccccCCCCCCCChHHHHHHHhcCCCCCceEEEEecCcEEEEccCCCHH
Q psy15432 360 GQGHLSSCETPGGQGHLSFSETPGGQGHLTGNQSSLLMGPHFEIDPKTYRGIKACVWPGRVQVIRKNNFKYFLDGAHTTD 439 (1255)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~e~i~~gL~~~~~pGR~e~v~~~~~~vilDgAHnp~ 439 (1255)
..++ ++.|.+||+++.||||||++..+ +.|++||||||+
T Consensus 274 ---------------------------------------~~i~-~~~i~~gl~~~~wpGR~e~l~~~-p~i~lDgAHNp~ 312 (427)
T COG0285 274 ---------------------------------------KEIS-EEAIRKGLANVDWPGRLERLSEN-PLILLDGAHNPH 312 (427)
T ss_pred ---------------------------------------ccCC-HHHHHHHHHhCcCCceEEEecCC-CeEEEECCCCHH
Confidence 0245 89999999999999999999876 489999999999
Q ss_pred HHHHHHHHHHhhhhcccccCccCCCCCCCCCccCCCCCccEEEEEecCCCCChhhhhHHhhccCCCcEEEEcCCCCCCCC
Q psy15432 440 SIELCAKWFLRKSEAEASSSRSVSSCPLDPTQSKSSNVIQRILVFNVTGERDPTKLLSPLLQSNQFEYILVTPNILTNES 519 (1255)
Q Consensus 440 si~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilVfg~~~drD~~~ll~~L~~~~~~d~vi~t~~~~~~~~ 519 (1255)
|++++.++++...... + ++++|||+..|||...|+..| ... |..++|...+....
T Consensus 313 aa~~La~~l~~~~~~~---------------------~-~~~~v~g~l~dKd~~~~l~~L-~~~--~~~~~~~~~~~~ra 367 (427)
T COG0285 313 AARALAETLKTLFNDR---------------------P-RLTLVFGMLKDKDIAGMLAAL-LPI--VDEIYTTPLPWPRA 367 (427)
T ss_pred HHHHHHHHHHHHhccC---------------------C-ceEEEEEeecCCCHHHHHHHh-hcc--CcEEEEccCCCccc
Confidence 9999999999876542 1 289999999999999999999 333 44444443333211
Q ss_pred CCCCcCCCCcccccccccccccCCCCCCCCCCCCCCCCCCCCCcccCCCCCcccCCCCCCCcccccccccccchhhHHHH
Q psy15432 520 SPDTQYGGNRTIDRFGVKLDSRTAAPNGGHEPGRPNVGQGGGGFQSRSGDNSIRSNANPLSSVDCHNVNDQSNSFHKIAT 599 (1255)
Q Consensus 520 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 599 (1255)
. + . ..+..
T Consensus 368 ~----~----------------------------------------------------------------~----~~l~~ 375 (427)
T COG0285 368 L----D----------------------------------------------------------------A----EELLA 375 (427)
T ss_pred C----C----------------------------------------------------------------H----HHHHH
Confidence 0 0 0 11222
Q ss_pred HHhhccCCCcEEEcCCHHHHHHHHhccCCCCCceEEEecccccccccceeecc
Q psy15432 600 VASALSQRSKVVEFSSVLDTYNFKYGLDPSKEYHILVTGSLHLVGAFLNVLIT 652 (1255)
Q Consensus 600 ~~~~~~~~~~~~~~~si~~ai~~~~~~~~~~~~~vlvtGSlhLVGgvL~~l~~ 652 (1255)
........ . ++|+++|++.+.... ..+..||||||+|++|.++.++..
T Consensus 376 ~~~~~~~~-~---~~~~~~a~~~~~~~~-~~~~~ilV~GSly~~~ev~~~~~~ 423 (427)
T COG0285 376 FAGERGGV-E---LDDVAEALELALEKA-DEDDLVLVTGSLYLAGEVLELLKK 423 (427)
T ss_pred HHHhhcCC-c---cccHHHHHHHHHHhc-CCCCeEEEEecHHHHHHHHHHhhc
Confidence 22222111 1 789999999998876 346899999999999999877643
|
|
| >PLN02913 dihydrofolate synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-72 Score=680.96 Aligned_cols=365 Identities=25% Similarity=0.377 Sum_probs=303.4
Q ss_pred CCCcHHHHHHHHHhcchhHHHHHhhhcCCCcccc-----cccchHHHHHHHHHhcCCccCCCCccEEEEcCCCChhHHHH
Q psy15432 50 IPQSYVDAIKQLNTLQSNIRTIRESKLRKDPVEM-----QAVQVDQVVQYLGHLNITLDDIKKLNVIHISGTKGKGSTCA 124 (1255)
Q Consensus 50 ~~~~y~eai~~L~~l~~~~~~~~~~~~~~~~~~~-----~~~~l~~~~~~L~~Lg~~~~~~~~l~vIhVtGTnGKgST~a 124 (1255)
...+|+++++||+++++. .+.|.|... ..++|++|+++|++||+|+ .++++|||||||||||||+
T Consensus 22 ~~~~~~~~~~~l~~~~~~-------~~~~~~~~~~~~~~~~~gL~r~~~ll~~LG~P~---~~~~vIhVaGTNGKGSt~a 91 (510)
T PLN02913 22 EEPELGDFLRYLDSLKNY-------EKSGVPKDAGTDSDDGFDLGRMRRLMDRLGNPH---SKFKAVHVAGTKGKGSTAA 91 (510)
T ss_pred cCcCHHHHHHHHHhhccc-------cccCCccccccccccCCCHHHHHHHHHHcCCch---hhCcEEEEeCCCchHHHHH
Confidence 456899999999998653 111111000 1279999999999999998 5678999999999999999
Q ss_pred HHHHHHHHCCCCeEEEcCCcccccceeEEeC--CeecChhhhhhHHHHHHHHHHhhhhccCCcchHHHHHHHHhhhhhhc
Q psy15432 125 YCESILRSHGFSTGFFSSPHLIEVRERIKLN--GEPISYDKFTKYFWTVYNALHAKRKHAEDMPAYFKFLTVMSFYVFVK 202 (1255)
Q Consensus 125 ~l~sIL~~~G~k~Gl~tSPhL~~~rERI~In--G~~is~~~ft~~~~~v~~~l~~~~~~~~~~p~~Fe~Lt~~A~~~F~~ 202 (1255)
|+++||+++|||||+||||||.++||||+|| |++|++++|..+|.+|++.+++........|||||++|+|||+||.+
T Consensus 92 ~l~~iL~~aG~~vG~fTSPHl~~~~ERi~in~~g~~is~~~~~~~~~~v~~~~~~~~~~~~~~~T~FE~~T~~A~~~F~~ 171 (510)
T PLN02913 92 FLSNILRAQGYSVGCYTSPHLRSIRERISVGKLGKPVSTNTLNDLFHGIKPILDEAIQLENGSLTHFEVLTALAFKLFAQ 171 (510)
T ss_pred HHHHHHHhcCCCeEEECCCCCceeceEEEECCCCCcCCHHHHHHHHHHHHHHHHHhhhccCCCCCHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999 99999999999999999998865433334699999999999999999
Q ss_pred cCCCEEEEeeccCCccccccccCC--ccEEEEcCCCcchhhhcCCCHHHHHHHHHcccCCCceeeeccCCCchHHHHHHH
Q psy15432 203 EKPDAVIMEVGIGGRYDNTNIIPN--TAVVGITSLGYDHTAVLGNTIEEITMQKAGIMKPNCIAVTSANQRGPCKQILLE 280 (1255)
Q Consensus 203 ~~vD~aVlEvG~GGr~D~tnii~~--P~v~vITnIg~DHld~lG~Tle~Ia~~KagI~k~g~~~v~~~~q~~e~~~vl~~ 280 (1255)
++||++|||||+|||+|+||++.. |+++||||||+||+++||+|+|+||++|+||||++.|+|++..+.+++..++++
T Consensus 172 ~~vD~aVlEvGlGGrlDaTNvi~~~~p~vsVITnIg~DH~~~LG~Tle~IA~eKagIik~g~pvV~~~~~~~~~~~vi~~ 251 (510)
T PLN02913 172 ENVDIAVIEAGLGGARDATNVIDSSGLAASVITTIGEEHLAALGGSLESIALAKSGIIKQGRPVVLGGPFLPHIESILRD 251 (510)
T ss_pred CCCCEEEEEecCCCCcccccccCCCCCcEEEEccccHHHHhhhcccHHHHHHHHhhhccCCCCEEECCCCCHHHHHHHHH
Confidence 999999999999999999999963 599999999999999999999999999999999999999874356778888888
Q ss_pred hhhccCceEEEcC-Ccc-------------eeeec---------------CcccccCCCchhHHhhHHHHHHHHHHHHHh
Q psy15432 281 TSRALNCVLLEAP-SIL-------------NYRWR---------------GQPLDEDWKSTVQSINISLAIQLAYLWMFR 331 (1255)
Q Consensus 281 ~a~~~~~~l~~~~-~~~-------------~~~~~---------------~~~i~l~l~G~~q~~Na~lAia~a~~~l~~ 331 (1255)
.|++++++++.+. ... .+.+. ...+.++|.|.||..|+++|++++..+. +
T Consensus 252 ~a~~~~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~L~G~hq~~Naa~Alaa~~~L~-~ 330 (510)
T PLN02913 252 KASSMNSPVVSASDPGVRSSIKGIITDNGKPCQSCDIVIRVEKDDPLFIELSDVNLRMLGSHQLQNAVTAACAALCLR-D 330 (510)
T ss_pred HHHHhCCCEEEeccccccceeecccccCCceeEEeccccccccccccccccccccCCCCCHHHHHHHHHHHHHHHHHH-h
Confidence 9988888876652 110 01110 0136688999999999999999887651 1
Q ss_pred hccchhhhhHHHHhhhhhccCCCCCCCCCCCCCCccCCCCCCCCccccCCCCCCCCccccccccCCCCCCCChHHHHHHH
Q psy15432 332 MNKSAELKSVIDKFLAEMRVSSPNETPGGQGHLSSCETPGGQGHLSFSETPGGQGHLTGNQSSLLMGPHFEIDPKTYRGI 411 (1255)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~e~i~~gL 411 (1255)
. +.+++ .+.+.+||
T Consensus 331 ~-----------------------------------------------------------------~~~i~-~~~I~~gL 344 (510)
T PLN02913 331 Q-----------------------------------------------------------------GWRIS-DASIRAGL 344 (510)
T ss_pred c-----------------------------------------------------------------CCCCC-HHHHHHHH
Confidence 0 01456 88999999
Q ss_pred hcCCCCCceEEEEe--------cCcEEEEccCCCHHHHHHHHHHHHhhhhcccccCccCCCCCCCCCccCCCCCccEEEE
Q psy15432 412 KACVWPGRVQVIRK--------NNFKYFLDGAHTTDSIELCAKWFLRKSEAEASSSRSVSSCPLDPTQSKSSNVIQRILV 483 (1255)
Q Consensus 412 ~~~~~pGR~e~v~~--------~~~~vilDgAHnp~si~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilV 483 (1255)
++++||||||++.. +++.||+||||||+|++++++++++..+. +++++|
T Consensus 345 ~~~~~pGR~E~i~~~~~~~~~~~~~~vIlDgAHNp~s~~al~~~L~~~~~~-----------------------~ki~~V 401 (510)
T PLN02913 345 ENTNLLGRSQFLTSKEAEVLGLPGATVLLDGAHTKESAKALVDTIKTAFPE-----------------------ARLALV 401 (510)
T ss_pred HhCCCCCceEEeeccccccccCCCCEEEEECCCCHHHHHHHHHHHHHhcCC-----------------------CCEEEE
Confidence 99999999999863 24589999999999999999999763321 268999
Q ss_pred EecCCCCChhhhhHHhhccCCCcEEEEcCCC
Q psy15432 484 FNVTGERDPTKLLSPLLQSNQFEYILVTPNI 514 (1255)
Q Consensus 484 fg~~~drD~~~ll~~L~~~~~~d~vi~t~~~ 514 (1255)
||+++|||+.+|++.+.....+|.+++++..
T Consensus 402 ~gml~DKd~~~~l~~l~~~~~~d~v~~~~~~ 432 (510)
T PLN02913 402 VAMASDKDHLAFASEFLSGLKPEAVFLTEAD 432 (510)
T ss_pred EEccCCCCHHHHHHHHhcccCCCEEEEEcCC
Confidence 9999999999999988333357999888653
|
|
| >COG0285 FolC Folylpolyglutamate synthase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-71 Score=648.41 Aligned_cols=346 Identities=34% Similarity=0.492 Sum_probs=294.5
Q ss_pred ccHHHHHHHHHhcchhHHHHHHhhccCCcccccccchHHHHHHHHHhcCcccccccceEEEecCCCCCccHHHHHHHHHH
Q psy15432 664 QSYVDAIKQLNTLQSNIRTIRESKLRKDPVEMQAVQVDQVVQYLGHLNITLDDIKKLNVIHISGTKGKGSTCAYCESILR 743 (1255)
Q Consensus 664 ~~y~~a~~~L~~lqsn~~~l~~~~~~g~~~~~~~~~v~~~~~~L~~Lg~~~~~~~~l~vIhVTGTnGKgST~aml~sILr 743 (1255)
++|+++.+||..+.. ...++. . .++|+||.++|++||+|+ +.+++|||+|||||||||+|+++||+
T Consensus 2 ~~~~~~~~wl~~l~~-------~~~~~~-i---~~gL~Ri~~ll~~LGnP~---~~~~vIhVaGTNGKGSt~afl~siL~ 67 (427)
T COG0285 2 MSLQELAEWLHYLEQ-------LHPKPG-I---DLGLERISRLLERLGNPQ---KSPPVIHVAGTNGKGSTCAFLESILR 67 (427)
T ss_pred cchHHHHHHHHHHHh-------cCCCCc-c---cCChHHHHHHHHHcCCcc---ccCCeEEEeCCCCchhHHHHHHHHHH
Confidence 456777777765432 222221 1 268999999999999998 78899999999999999999999999
Q ss_pred HCCCCeEEEcCcccccccceeeeCCeecChhhhhhHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHHhhhcCCCCEEEEe
Q psy15432 744 SHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTKYFWTVYNALHAKRKHAEDMPAYFKFLTVMSFYVFVKEKPDAVIME 823 (1255)
Q Consensus 744 ~~G~rtGl~tSPhL~~~~ERI~InG~pIs~~~f~~~~~~v~~~l~~~~~~~~~~pt~Fe~lT~mAf~~F~~~~vD~aVlE 823 (1255)
++|||||+||||||.++||||+|||+||+++.++.++.+|.......+ ...|||||++|+|||+||.+.+||++|||
T Consensus 68 ~aG~~VG~yTSPHL~~~~ERI~ing~~Isd~~~~~~~~~ve~~~~~~~---~~~~T~FE~~Ta~Af~~F~~~~vD~aIlE 144 (427)
T COG0285 68 EAGYKVGVYTSPHLLSFNERIRINGEPISDEELAAAFERVEEAAGSLD---LISLTYFEVLTAMAFLYFAEAKVDVAILE 144 (427)
T ss_pred HcCCCceEECCCccCccceEEEECCEECCHHHHHHHHHHHHHHhcccc---cCCCcHHHHHHHHHHHHHHhCCCCEEEEe
Confidence 999999999999999999999999999999999999986655543321 46799999999999999999999999999
Q ss_pred cccCCccccccccCCCcEEEEcCCCchhhhhcCCCHHHHHHHHhccccCCceEEEccCCCChhHHHHHHHhhhcCCeEEE
Q psy15432 824 VGIGGRYDNTNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIMKPNCIAVTSANQRGPCKQILLETSRALNCVLLE 903 (1255)
Q Consensus 824 VG~GGr~D~TNvi~~P~VavITnIg~DHl~~LG~TleeIA~~KagI~K~g~~av~~~~qd~~~~~vl~~~A~~~~~~l~~ 903 (1255)
||+|||+|+||+|. |.|+|||+|++||+++||+|+|+||++||||||+|.|+|+...+.++++.+++++|.++++++..
T Consensus 145 VGLGGRlDATNVi~-p~vsvIT~I~lDH~~~LG~tie~IA~EKAGI~k~g~P~v~~~~~~p~a~~vi~~~a~~~~~~~~~ 223 (427)
T COG0285 145 VGLGGRLDATNVIE-PDVSVITSIGLDHTAFLGDTLESIAREKAGIIKAGKPAVIGEQQPPEALNVIAERAEELGAPLFV 223 (427)
T ss_pred ccccccccchhccC-CceEEEcccChhHHHHhCCcHHHHHHHhhhhccCCCcEEECCCCCHHHHHHHHHHHHhcCCCeee
Confidence 99999999999996 99999999999999999999999999999999999999999856678999999999999999888
Q ss_pred cCCc-------cceeccC----CccccCCCchh-HHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHhhhhhcCCCCCCCC
Q psy15432 904 APSI-------LNYRWRG----QPLDEDWKSTV-QSINISLAIQLAYLWMFRMNKSAELKSVIDKFLAEMRVSSPNETPG 971 (1255)
Q Consensus 904 ~~~~-------~~~~~~~----~~v~l~L~G~h-q~~Na~lAiala~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 971 (1255)
.+.. ..+.+.+ ..+.+++.|.| |..||++|++++..+.
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~lp~l~~~~Q~~NAa~Ai~al~~l~------------------------------ 273 (427)
T COG0285 224 LGPDFQVLEEGNGFSFQGGGGLLDLPLPLLGGHHQIENAALAIAALEALG------------------------------ 273 (427)
T ss_pred cccchhhccccceEEEecCCeeeeeccccccchhHHHHHHHHHHHHHHhc------------------------------
Confidence 7521 1233332 25678888888 9999999999988621
Q ss_pred CCCCCCcCCCCCCCCCccccCCCCCCCCcccccccccCCCCCCCC-HHHHHHHhcCCCCCcEEEEeecCcEEEEEcCcCH
Q psy15432 972 GQGHLSSCETPGGQGHLSFSETPGGQGHLTGNQSSLLMGPHFEID-PKTYRGIKACVWPGRVQVIRKNNFKYFLDGAHTT 1050 (1255)
Q Consensus 972 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~i~-~~i~~gL~~~~~pGR~E~v~~~~~~vilDgAHNP 1050 (1255)
..++ +.|.+||+++.||||||++..++ .+++||||||
T Consensus 274 -----------------------------------------~~i~~~~i~~gl~~~~wpGR~e~l~~~p-~i~lDgAHNp 311 (427)
T COG0285 274 -----------------------------------------KEISEEAIRKGLANVDWPGRLERLSENP-LILLDGAHNP 311 (427)
T ss_pred -----------------------------------------ccCCHHHHHHHHHhCcCCceEEEecCCC-eEEEECCCCH
Confidence 1245 66999999999999999999774 6999999999
Q ss_pred HHHHHHHHHHHhhhccccCCCcccCCCCCc-EEEEEecCCCCChhhhhhhhhcCCCCcEEEEcC
Q psy15432 1051 DSIELCAKWFLRKSEAEANPTQSKSSNVIQ-RILVFNVTGERDPTKLLSPLLQSNQFEYILVTP 1113 (1255)
Q Consensus 1051 ~S~~a~l~~l~~~~~~~~~~~~~~~~~~~~-~vlVfg~~~drD~~~ll~~L~~~~~~d~vi~t~ 1113 (1255)
+|++++.++++..... .+ +++|||++.|||...|++.| .+. .+.+++++
T Consensus 312 ~aa~~La~~l~~~~~~------------~~~~~~v~g~l~dKd~~~~l~~L-~~~-~~~~~~~~ 361 (427)
T COG0285 312 HAARALAETLKTLFND------------RPRLTLVFGMLKDKDIAGMLAAL-LPI-VDEIYTTP 361 (427)
T ss_pred HHHHHHHHHHHHHhcc------------CCceEEEEEeecCCCHHHHHHHh-hcc-CcEEEEcc
Confidence 9999999999987531 23 78999999999999999999 444 44555554
|
|
| >TIGR01499 folC folylpolyglutamate synthase/dihydrofolate synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-68 Score=628.78 Aligned_cols=382 Identities=33% Similarity=0.556 Sum_probs=315.9
Q ss_pred hHHHHHHHHHhcCCccCCCCccEEEEcCCCChhHHHHHHHHHHHHCCCCeEEEcCCcccccceeEEeCCeecChhhhhhH
Q psy15432 88 VDQVVQYLGHLNITLDDIKKLNVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTKY 167 (1255)
Q Consensus 88 l~~~~~~L~~Lg~~~~~~~~l~vIhVtGTnGKgST~a~l~sIL~~~G~k~Gl~tSPhL~~~rERI~InG~~is~~~ft~~ 167 (1255)
|++|+++|++||+|+ .++++|||||||||||||+|+++||+++|+|||+||||||.++||||+|||++++++.|+.+
T Consensus 1 l~r~~~~l~~lg~p~---~~~~vI~VtGTNGKgSt~~~l~~iL~~~g~~vg~~tSphl~~~~eri~i~g~~i~~~~~~~~ 77 (397)
T TIGR01499 1 LERMKKLLEALGNPQ---DLYPVIHVAGTNGKGSTCAFLESILRAAGYKVGLFTSPHLVSFNERIRINGEPISDEELAQA 77 (397)
T ss_pred ChHHHHHHHHcCCcH---hhCCEEEEeCCCChHHHHHHHHHHHHHcCCCeeEEeCCCcCccceEEEECCEECCHHHHHHH
Confidence 579999999999997 56899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhccCCcchHHHHHHHHhhhhhhccCCCEEEEeeccCCccccccccCCccEEEEcCCCcchhhhcCCCH
Q psy15432 168 FWTVYNALHAKRKHAEDMPAYFKFLTVMSFYVFVKEKPDAVIMEVGIGGRYDNTNIIPNTAVVGITSLGYDHTAVLGNTI 247 (1255)
Q Consensus 168 ~~~v~~~l~~~~~~~~~~p~~Fe~Lt~~A~~~F~~~~vD~aVlEvG~GGr~D~tnii~~P~v~vITnIg~DHld~lG~Tl 247 (1255)
+++|++..+... ..|++||++|+|||++|.+++||++|||||+|||+|+||++ +|+++|||||++||+++||+|+
T Consensus 78 ~~~v~~~~~~~~----~~~~~fe~~t~~A~~~f~~~~~d~~VlEvGlggrld~tn~i-~p~vaViTnI~~DHl~~lG~t~ 152 (397)
T TIGR01499 78 FEQVRPILEKLS----QQPTYFELLTLLAFLYFAQAQVDVAVLEVGLGGRLDATNVI-EPLVSVITSIGLDHTEILGDTL 152 (397)
T ss_pred HHHHHHHHHhcc----CCCCHHHHHHHHHHHHHHHCCCCEEEEeecCCCCccccccc-CCCeEEEccccHHHHHHhCccH
Confidence 999998876432 36999999999999999999999999999999999999999 5999999999999999999999
Q ss_pred HHHHHHHHcccCCCceeeeccCCCchHHHHHHHhhhccCceEEEcCCc--------ceeeecC-----cccccCCCchhH
Q psy15432 248 EEITMQKAGIMKPNCIAVTSANQRGPCKQILLETSRALNCVLLEAPSI--------LNYRWRG-----QPLDEDWKSTVQ 314 (1255)
Q Consensus 248 e~Ia~~KagI~k~g~~~v~~~~q~~e~~~vl~~~a~~~~~~l~~~~~~--------~~~~~~~-----~~i~l~l~G~~q 314 (1255)
|+||++|++||+++.++|++. +++++..++++.+.+.+++++.++.. ..+.+.+ ..+.+++.|.||
T Consensus 153 e~ia~~Ka~I~k~~~~~v~~~-d~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~ 231 (397)
T TIGR01499 153 EEIAWEKAGIIKEGVPIVTGP-QEPEALNVLKKKAQEKGAPLFVVGRDFNYSETDENYLSFSGANLFLEPLALSLLGDHQ 231 (397)
T ss_pred HHHHHHHhCccCCCCCEEEcC-CChHHHHHHHHHHHHcCCCEEEeccceeecccccceEEeecccccccccCCCCCCHHH
Confidence 999999999999999999987 77788888887777666665544321 1122221 135678999999
Q ss_pred HhhHHHHHHHHHHHHHhhccchhhhhHHHHhhhhhccCCCCCCCCCCCCCCccCCCCCCCCccccCCCCCCCCccccccc
Q psy15432 315 SINISLAIQLAYLWMFRMNKSAELKSVIDKFLAEMRVSSPNETPGGQGHLSSCETPGGQGHLSFSETPGGQGHLTGNQSS 394 (1255)
Q Consensus 315 ~~Na~lAia~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (1255)
++|+++|++++..+...
T Consensus 232 ~~N~~~Aiaa~~~lg~~--------------------------------------------------------------- 248 (397)
T TIGR01499 232 AENAALALAALEVLGKQ--------------------------------------------------------------- 248 (397)
T ss_pred HHHHHHHHHHHHHHHhc---------------------------------------------------------------
Confidence 99999999988765100
Q ss_pred cCCCCCCCChHHHHHHHhcCCCCCceEEEEecCcEEEEccCCCHHHHHHHHHHHHhhhhcccccCccCCCCCCCCCccCC
Q psy15432 395 LLMGPHFEIDPKTYRGIKACVWPGRVQVIRKNNFKYFLDGAHTTDSIELCAKWFLRKSEAEASSSRSVSSCPLDPTQSKS 474 (1255)
Q Consensus 395 l~~~~~~~l~e~i~~gL~~~~~pGR~e~v~~~~~~vilDgAHnp~si~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (1255)
...++ ++.+.+||+++.||||||++..+++.+|+||||||+|+++++++++....+
T Consensus 249 ---~~~i~-~~~i~~~L~~~~~pGR~e~i~~~~~~viiD~AHNp~a~~~~l~~l~~~~~~-------------------- 304 (397)
T TIGR01499 249 ---RPKLS-EEAIRKGLANTIWPGRLEILSEDNPNILLDGAHNPHSAEALAEWFKKRFNG-------------------- 304 (397)
T ss_pred ---cCCCC-HHHHHHHHHhCCCCceEEEEecCCCEEEEECCCCHHHHHHHHHHHHHhcCC--------------------
Confidence 00245 789999999999999999998656789999999999999999999864321
Q ss_pred CCCccEEEEEecCCCCChhhhhHHhhccCCCcEEEEcCCCCCCCCCCCCcCCCCcccccccccccccCCCCCCCCCCCCC
Q psy15432 475 SNVIQRILVFNVTGERDPTKLLSPLLQSNQFEYILVTPNILTNESSPDTQYGGNRTIDRFGVKLDSRTAAPNGGHEPGRP 554 (1255)
Q Consensus 475 ~~~~~~ilVfg~~~drD~~~ll~~L~~~~~~d~vi~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 554 (1255)
+++++|||+++|||+.++++.|+.....|.+++++++|+.+++.+
T Consensus 305 ---~~i~~V~G~~~dkd~~~~~~~l~~~~~~d~~~~~~~~~r~~~~~~-------------------------------- 349 (397)
T TIGR01499 305 ---RPIILLFGALADKDAAAMLAPLKPVVDKEVFVTPFDYPRADDAAD-------------------------------- 349 (397)
T ss_pred ---CCeEEEEEeeCCCCHHHHHHHHhhccCcEEEEECCCCCCCCCHHH--------------------------------
Confidence 268899999999999999999842212246677778887665310
Q ss_pred CCCCCCCCcccCCCCCcccCCCCCCCcccccccccccchhhHHHHHHhhccCCCcEEEcCCHHHHHHHHhccCCCCCceE
Q psy15432 555 NVGQGGGGFQSRSGDNSIRSNANPLSSVDCHNVNDQSNSFHKIATVASALSQRSKVVEFSSVLDTYNFKYGLDPSKEYHI 634 (1255)
Q Consensus 555 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~si~~ai~~~~~~~~~~~~~v 634 (1255)
|.+..... .+.+++++++||+.+. .. ++++.|
T Consensus 350 ------------------------------------------i~~~~~~~----~~~~~~~~~~ai~~a~-~~-~~~d~v 381 (397)
T TIGR01499 350 ------------------------------------------LAALAETF----GKETVEDWREALALAL-NA-SAEDDI 381 (397)
T ss_pred ------------------------------------------HHHHHHHc----CceecCCHHHHHHHHH-hC-CCCCEE
Confidence 11111111 1457889999999887 43 456789
Q ss_pred EEecccccccccce
Q psy15432 635 LVTGSLHLVGAFLN 648 (1255)
Q Consensus 635 lvtGSlhLVGgvL~ 648 (1255)
||||||||+|.++.
T Consensus 382 lv~GSlyl~~~~~~ 395 (397)
T TIGR01499 382 LVTGSLYLVGEVRK 395 (397)
T ss_pred EEEccHHHHHHHHH
Confidence 99999999999864
|
A mutation study of the FolC gene of E. coli suggests that both activitities belong to the same active site. Because some examples are monofunctional (and these cannot be separated phylogenetically), the model is treated as subfamily, not equivalog. |
| >PLN02913 dihydrofolate synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-67 Score=632.93 Aligned_cols=366 Identities=25% Similarity=0.374 Sum_probs=301.9
Q ss_pred CcccHHHHHHHHHhcchhHHHHHHhh-ccCCccc-ccccchHHHHHHHHHhcCcccccccceEEEecCCCCCccHHHHHH
Q psy15432 662 IPQSYVDAIKQLNTLQSNIRTIRESK-LRKDPVE-MQAVQVDQVVQYLGHLNITLDDIKKLNVIHISGTKGKGSTCAYCE 739 (1255)
Q Consensus 662 ~~~~y~~a~~~L~~lqsn~~~l~~~~-~~g~~~~-~~~~~v~~~~~~L~~Lg~~~~~~~~l~vIhVTGTnGKgST~aml~ 739 (1255)
...+|+++++||++++... ++. ++|...+ -..++|+||+++|++||+|+ .++++|||||||||||||+|++
T Consensus 22 ~~~~~~~~~~~l~~~~~~~----~~~~~~~~~~~~~~~~gL~r~~~ll~~LG~P~---~~~~vIhVaGTNGKGSt~a~l~ 94 (510)
T PLN02913 22 EEPELGDFLRYLDSLKNYE----KSGVPKDAGTDSDDGFDLGRMRRLMDRLGNPH---SKFKAVHVAGTKGKGSTAAFLS 94 (510)
T ss_pred cCcCHHHHHHHHHhhcccc----ccCCccccccccccCCCHHHHHHHHHHcCCch---hhCcEEEEeCCCchHHHHHHHH
Confidence 4568999999999986431 000 0111010 01278999999999999998 5679999999999999999999
Q ss_pred HHHHHCCCCeEEEcCcccccccceeeeC--CeecChhhhhhHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHHhhhcCCC
Q psy15432 740 SILRSHGFSTGFFSSPHLIEVRERIKLN--GEPISYDKFTKYFWTVYNALHAKRKHAEDMPAYFKFLTVMSFYVFVKEKP 817 (1255)
Q Consensus 740 sILr~~G~rtGl~tSPhL~~~~ERI~In--G~pIs~~~f~~~~~~v~~~l~~~~~~~~~~pt~Fe~lT~mAf~~F~~~~v 817 (1255)
+||+++|||||+||||||+++||||+|| |+||+++.|..++.+|++.+++........|||||++|+|||+||.+++|
T Consensus 95 ~iL~~aG~~vG~fTSPHl~~~~ERi~in~~g~~is~~~~~~~~~~v~~~~~~~~~~~~~~~T~FE~~T~~A~~~F~~~~v 174 (510)
T PLN02913 95 NILRAQGYSVGCYTSPHLRSIRERISVGKLGKPVSTNTLNDLFHGIKPILDEAIQLENGSLTHFEVLTALAFKLFAQENV 174 (510)
T ss_pred HHHHhcCCCeEEECCCCCceeceEEEECCCCCcCCHHHHHHHHHHHHHHHHHhhhccCCCCCHHHHHHHHHHHHHhhCCC
Confidence 9999999999999999999999999999 99999999999999999998876433344699999999999999999999
Q ss_pred CEEEEecccCCccccccccCC--CcEEEEcCCCchhhhhcCCCHHHHHHHHhccccCCceEEEccCCCChhHHHHHHHhh
Q psy15432 818 DAVIMEVGIGGRYDNTNIIPN--TAVVGITSLGYDHTAVLGNTIEEITMQKAGIMKPNCIAVTSANQRGPCKQILLETSR 895 (1255)
Q Consensus 818 D~aVlEVG~GGr~D~TNvi~~--P~VavITnIg~DHl~~LG~TleeIA~~KagI~K~g~~av~~~~qd~~~~~vl~~~A~ 895 (1255)
|++|||||||||+|+||++.. |+++||||||+||+++||+|+|+||++|+||||+++|+|++..+.+++..++.+.|+
T Consensus 175 D~aVlEvGlGGrlDaTNvi~~~~p~vsVITnIg~DH~~~LG~Tle~IA~eKagIik~g~pvV~~~~~~~~~~~vi~~~a~ 254 (510)
T PLN02913 175 DIAVIEAGLGGARDATNVIDSSGLAASVITTIGEEHLAALGGSLESIALAKSGIIKQGRPVVLGGPFLPHIESILRDKAS 254 (510)
T ss_pred CEEEEEecCCCCcccccccCCCCCcEEEEccccHHHHhhhcccHHHHHHHHhhhccCCCCEEECCCCCHHHHHHHHHHHH
Confidence 999999999999999999953 599999999999999999999999999999999999999974356778888888999
Q ss_pred hcCCeEEEcC-Cccc-------------eec-c--------------CCccccCCCchhHHHHHHHHHHHHHHHHHhhcc
Q psy15432 896 ALNCVLLEAP-SILN-------------YRW-R--------------GQPLDEDWKSTVQSINISLAIQLAYLWMFRMNK 946 (1255)
Q Consensus 896 ~~~~~l~~~~-~~~~-------------~~~-~--------------~~~v~l~L~G~hq~~Na~lAiala~~~l~~~~~ 946 (1255)
+.+++++.+. .... +.+ . ...+.++|.|.||..|+++|++++..+...
T Consensus 255 ~~~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~L~G~hq~~Naa~Alaa~~~L~~~--- 331 (510)
T PLN02913 255 SMNSPVVSASDPGVRSSIKGIITDNGKPCQSCDIVIRVEKDDPLFIELSDVNLRMLGSHQLQNAVTAACAALCLRDQ--- 331 (510)
T ss_pred HhCCCEEEeccccccceeecccccCCceeEEeccccccccccccccccccccCCCCCHHHHHHHHHHHHHHHHHHhc---
Confidence 8888887662 1100 111 0 013668899999999999999988763100
Q ss_pred hhhhhhHHHHHhhhhhcCCCCCCCCCCCCCCcCCCCCCCCCccccCCCCCCCCcccccccccCCCCCCCC-HHHHHHHhc
Q psy15432 947 SAELKSVIDKFLAEMRVSSPNETPGGQGHLSSCETPGGQGHLSFSETPGGQGHLTGNQSSLLMGPHFEID-PKTYRGIKA 1025 (1255)
Q Consensus 947 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~i~-~~i~~gL~~ 1025 (1255)
+++++ +.+.+||++
T Consensus 332 -----------------------------------------------------------------~~~i~~~~I~~gL~~ 346 (510)
T PLN02913 332 -----------------------------------------------------------------GWRISDASIRAGLEN 346 (510)
T ss_pred -----------------------------------------------------------------CCCCCHHHHHHHHHh
Confidence 03466 679999999
Q ss_pred CCCCCcEEEEee--------cCcEEEEEcCcCHHHHHHHHHHHHhhhccccCCCcccCCCCCcEEEEEecCCCCChhhhh
Q psy15432 1026 CVWPGRVQVIRK--------NNFKYFLDGAHTTDSIELCAKWFLRKSEAEANPTQSKSSNVIQRILVFNVTGERDPTKLL 1097 (1255)
Q Consensus 1026 ~~~pGR~E~v~~--------~~~~vilDgAHNP~S~~a~l~~l~~~~~~~~~~~~~~~~~~~~~vlVfg~~~drD~~~ll 1097 (1255)
++||||||++.. ++..+|+||||||+||++++++++.... .+++++|||+++|||+..|+
T Consensus 347 ~~~pGR~E~i~~~~~~~~~~~~~~vIlDgAHNp~s~~al~~~L~~~~~------------~~ki~~V~gml~DKd~~~~l 414 (510)
T PLN02913 347 TNLLGRSQFLTSKEAEVLGLPGATVLLDGAHTKESAKALVDTIKTAFP------------EARLALVVAMASDKDHLAFA 414 (510)
T ss_pred CCCCCceEEeeccccccccCCCCEEEEECCCCHHHHHHHHHHHHHhcC------------CCCEEEEEEccCCCCHHHHH
Confidence 999999999863 2457999999999999999999976321 14689999999999999999
Q ss_pred hhhhcCCCCcEEEEcCC
Q psy15432 1098 SPLLQSNQFEYILVTPN 1114 (1255)
Q Consensus 1098 ~~L~~~~~~d~vi~t~~ 1114 (1255)
+.+.....+|.+++++.
T Consensus 415 ~~l~~~~~~d~v~~~~~ 431 (510)
T PLN02913 415 SEFLSGLKPEAVFLTEA 431 (510)
T ss_pred HHHhcccCCCEEEEEcC
Confidence 98733335788888764
|
|
| >PRK10846 bifunctional folylpolyglutamate synthase/ dihydrofolate synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-64 Score=594.68 Aligned_cols=393 Identities=24% Similarity=0.364 Sum_probs=313.0
Q ss_pred CcHHHHHHHHHhcchhHHHHHhhhcCCCcccccccchHHHHHHHHHhcCCccCCCCccEEEEcCCCChhHHHHHHHHHHH
Q psy15432 52 QSYVDAIKQLNTLQSNIRTIRESKLRKDPVEMQAVQVDQVVQYLGHLNITLDDIKKLNVIHISGTKGKGSTCAYCESILR 131 (1255)
Q Consensus 52 ~~y~eai~~L~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~Lg~~~~~~~~l~vIhVtGTnGKgST~a~l~sIL~ 131 (1255)
++|++++++|+++.+. +. +++|++|+++|+.||+|+ +++++|||||||||||||+|+++||+
T Consensus 11 ~~~~~~~~~l~~~~~~----------~~-----~~~l~~~~~ll~~lg~p~---~~~~~I~VtGTNGKgSt~~~l~~iL~ 72 (416)
T PRK10846 11 SPLASWLSYLENLHSK----------TI-----DLGLERVSQVAARLDLLK---PAPFVFTVAGTNGKGTTCRTLESILM 72 (416)
T ss_pred HHHHHHHHHHHhcccc----------CC-----CCChHHHHHHHHHhCCCc---cCCCEEEEECCCChHHHHHHHHHHHH
Confidence 5688888888876431 21 268999999999999998 67799999999999999999999999
Q ss_pred HCCCCeEEEcCCcccccceeEEeCCeecChhhhhhHHHHHHHHHHhhhhccCCcchHHHHHHHHhhhhhhccCCCEEEEe
Q psy15432 132 SHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTKYFWTVYNALHAKRKHAEDMPAYFKFLTVMSFYVFVKEKPDAVIME 211 (1255)
Q Consensus 132 ~~G~k~Gl~tSPhL~~~rERI~InG~~is~~~ft~~~~~v~~~l~~~~~~~~~~p~~Fe~Lt~~A~~~F~~~~vD~aVlE 211 (1255)
++|+|||+||||||.+++|||+|||++|+++.|++++.+|.+..+. ..|+|||++|++||.+|.+++||++|||
T Consensus 73 ~~G~~vG~~tSphl~~~~eri~i~g~~i~~~~~~~~~~~~~~~~~~------~~~t~fe~~t~~a~~~f~~~~vd~~VlE 146 (416)
T PRK10846 73 AAGYRVGVYSSPHLVRYTERVRIQGQELPESAHTASFAEIEAARGD------ISLTYFEYGTLSALWLFKQAQLDVVILE 146 (416)
T ss_pred HcCCCceEECCCCCCCcceEEEECCEECCHHHHHHHHHHHHHHhcC------CCCCHHHHHHHHHHHHHHHcCCCEEEEE
Confidence 9999999999999999999999999999999999999888765532 2589999999999999999999999999
Q ss_pred eccCCccccccccCCccEEEEcCCCcchhhhcCCCHHHHHHHHHcccCCCceeeeccCCCchHHHHHHHhhhccCceEEE
Q psy15432 212 VGIGGRYDNTNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIMKPNCIAVTSANQRGPCKQILLETSRALNCVLLE 291 (1255)
Q Consensus 212 vG~GGr~D~tnii~~P~v~vITnIg~DHld~lG~Tle~Ia~~KagI~k~g~~~v~~~~q~~e~~~vl~~~a~~~~~~l~~ 291 (1255)
||+|||+|+||++ +|+++|||||++||+++||+|+|+||++|++||+++.++|++. ++ ...++.+.+.+.+++++.
T Consensus 147 vglggrld~tn~i-~p~vaviTnI~~DHld~lG~t~e~ia~~Ka~Iik~~~~~V~~~-~d--~~~~~~~~a~~~~~~~~~ 222 (416)
T PRK10846 147 VGLGGRLDATNIV-DADVAVVTSIALDHTDWLGPDRESIGREKAGIFRAEKPAVVGE-PD--MPSTIADVAQEKGALLQR 222 (416)
T ss_pred ecCCCCchhhhcc-CCCEEEECCccHHHHHHhcCCHHHHHHHHHhhhcCCCeEEECC-cc--HhHHHHHHHHHhCCcEEE
Confidence 9999999999999 6999999999999999999999999999999999999988764 22 234455566666666553
Q ss_pred cCCc-------ceeeecCc---ccccCCCchhHHhhHHHHHHHHHHHHHhhccchhhhhHHHHhhhhhccCCCCCCCCCC
Q psy15432 292 APSI-------LNYRWRGQ---PLDEDWKSTVQSINISLAIQLAYLWMFRMNKSAELKSVIDKFLAEMRVSSPNETPGGQ 361 (1255)
Q Consensus 292 ~~~~-------~~~~~~~~---~i~l~l~G~~q~~Na~lAia~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (1255)
.+.. ..+.+... ...++++ .||..|+++|++++..+
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~N~~~Aia~~~~~--------------------------------- 268 (416)
T PRK10846 223 RGVDWNYSVTDHDWAFSDGDGTLENLPLP-NVPLPNAATALAALRAS--------------------------------- 268 (416)
T ss_pred ecceeeeeccCceEEEecCccccccCCcc-chHHHHHHHHHHHHHHc---------------------------------
Confidence 3211 11111110 1124555 47999999999887653
Q ss_pred CCCCccCCCCCCCCccccCCCCCCCCccccccccCCCCCCCChHHHHHHHhcCCCCCceEEEEecCcEEEEccCCCHHHH
Q psy15432 362 GHLSSCETPGGQGHLSFSETPGGQGHLTGNQSSLLMGPHFEIDPKTYRGIKACVWPGRVQVIRKNNFKYFLDGAHTTDSI 441 (1255)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~e~i~~gL~~~~~pGR~e~v~~~~~~vilDgAHnp~si 441 (1255)
. .+++ .++|++||+++.||||||++...+ .+|+||||||+|+
T Consensus 269 --------------------------------~----~~i~-~~~i~~~L~~~~~~gR~e~~~~~~-~iI~D~AHNp~a~ 310 (416)
T PRK10846 269 --------------------------------G----LEVS-EQAIRDGIASAILPGRFQIVSESP-RVILDVAHNPHAA 310 (416)
T ss_pred --------------------------------C----CCCC-HHHHHHHHHhCCCCceEEEEcCCC-cEEEECCCCHHHH
Confidence 0 1556 899999999999999999998644 6999999999999
Q ss_pred HHHHHHHHhhhhcccccCccCCCCCCCCCccCCCCCccEEEEEecCCCCChhhhhHHhhccCCCcEEEEcCCC-CCCCCC
Q psy15432 442 ELCAKWFLRKSEAEASSSRSVSSCPLDPTQSKSSNVIQRILVFNVTGERDPTKLLSPLLQSNQFEYILVTPNI-LTNESS 520 (1255)
Q Consensus 442 ~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilVfg~~~drD~~~ll~~L~~~~~~d~vi~t~~~-~~~~~~ 520 (1255)
+++++.++....+ +++++|||++++||...++..| ...+|.+++++.. ++.+.+
T Consensus 311 ~~l~~~L~~~~~~-----------------------~~ii~Vfg~~gdkd~~~~l~~L--~~~~d~viv~~~~~~r~~~~ 365 (416)
T PRK10846 311 EYLTGRLKALPKN-----------------------GRVLAVIGMLHDKDIAGTLACL--KSVVDDWYCAPLEGPRGATA 365 (416)
T ss_pred HHHHHHHHHhcCC-----------------------CCEEEEEEeeCCCCHHHHHHHH--hhhCCEEEEECCCCCCCCCH
Confidence 9999988764211 2789999999999999999988 3346777666532 222110
Q ss_pred CCCcCCCCcccccccccccccCCCCCCCCCCCCCCCCCCCCCcccCCCCCcccCCCCCCCcccccccccccchhhHHHHH
Q psy15432 521 PDTQYGGNRTIDRFGVKLDSRTAAPNGGHEPGRPNVGQGGGGFQSRSGDNSIRSNANPLSSVDCHNVNDQSNSFHKIATV 600 (1255)
Q Consensus 521 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 600 (1255)
..|++.
T Consensus 366 --------------------------------------------------------------------------~~l~~~ 371 (416)
T PRK10846 366 --------------------------------------------------------------------------EQLAEH 371 (416)
T ss_pred --------------------------------------------------------------------------HHHHHH
Confidence 112222
Q ss_pred HhhccCCCcEEEcCCHHHHHHHHhccCCCCCceEEEecccccccccceee
Q psy15432 601 ASALSQRSKVVEFSSVLDTYNFKYGLDPSKEYHILVTGSLHLVGAFLNVL 650 (1255)
Q Consensus 601 ~~~~~~~~~~~~~~si~~ai~~~~~~~~~~~~~vlvtGSlhLVGgvL~~l 650 (1255)
.. +..+++++++|++.+.... .+++.||||||+|++|.++..+
T Consensus 372 ~~------~~~~~~~~~~Ai~~a~~~a-~~gD~VLi~GS~~~~~~~~~~~ 414 (416)
T PRK10846 372 LG------NGKSFDSVAQAWDAAMADA-KPEDTVLVCGSFHTVAHVMEVI 414 (416)
T ss_pred hh------hCcccCCHHHHHHHHHHhc-CCCCEEEEECcHHHHHHHHHhh
Confidence 21 1246789999999998776 4567899999999999986543
|
|
| >TIGR01499 folC folylpolyglutamate synthase/dihydrofolate synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-63 Score=586.60 Aligned_cols=373 Identities=31% Similarity=0.495 Sum_probs=302.5
Q ss_pred hHHHHHHHHHhcCcccccccceEEEecCCCCCccHHHHHHHHHHHCCCCeEEEcCcccccccceeeeCCeecChhhhhhH
Q psy15432 700 VDQVVQYLGHLNITLDDIKKLNVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTKY 779 (1255)
Q Consensus 700 v~~~~~~L~~Lg~~~~~~~~l~vIhVTGTnGKgST~aml~sILr~~G~rtGl~tSPhL~~~~ERI~InG~pIs~~~f~~~ 779 (1255)
|++|+++|++||+|+ +++++|||||||||||||+|+++||+++|+|||+||||||.++||||+|||++|+++.|..+
T Consensus 1 l~r~~~~l~~lg~p~---~~~~vI~VtGTNGKgSt~~~l~~iL~~~g~~vg~~tSphl~~~~eri~i~g~~i~~~~~~~~ 77 (397)
T TIGR01499 1 LERMKKLLEALGNPQ---DLYPVIHVAGTNGKGSTCAFLESILRAAGYKVGLFTSPHLVSFNERIRINGEPISDEELAQA 77 (397)
T ss_pred ChHHHHHHHHcCCcH---hhCCEEEEeCCCChHHHHHHHHHHHHHcCCCeeEEeCCCcCccceEEEECCEECCHHHHHHH
Confidence 579999999999998 56899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCCcHHHHHHHHHHHhhhcCCCCEEEEecccCCccccccccCCCcEEEEcCCCchhhhhcCCCH
Q psy15432 780 FWTVYNALHAKRKHAEDMPAYFKFLTVMSFYVFVKEKPDAVIMEVGIGGRYDNTNIIPNTAVVGITSLGYDHTAVLGNTI 859 (1255)
Q Consensus 780 ~~~v~~~l~~~~~~~~~~pt~Fe~lT~mAf~~F~~~~vD~aVlEVG~GGr~D~TNvi~~P~VavITnIg~DHl~~LG~Tl 859 (1255)
+.++++..+... ..|+|||++|+|||++|.+++||++|||||+|||+|+||++ +|+++|||||++||+++||+|+
T Consensus 78 ~~~v~~~~~~~~----~~~~~fe~~t~~A~~~f~~~~~d~~VlEvGlggrld~tn~i-~p~vaViTnI~~DHl~~lG~t~ 152 (397)
T TIGR01499 78 FEQVRPILEKLS----QQPTYFELLTLLAFLYFAQAQVDVAVLEVGLGGRLDATNVI-EPLVSVITSIGLDHTEILGDTL 152 (397)
T ss_pred HHHHHHHHHhcc----CCCCHHHHHHHHHHHHHHHCCCCEEEEeecCCCCccccccc-CCCeEEEccccHHHHHHhCccH
Confidence 999998876531 36999999999999999999999999999999999999999 5999999999999999999999
Q ss_pred HHHHHHHhccccCCceEEEccCCCChhHHHHHHHhhhcCCeEEEcCCcc--------ceeccC-----CccccCCCchhH
Q psy15432 860 EEITMQKAGIMKPNCIAVTSANQRGPCKQILLETSRALNCVLLEAPSIL--------NYRWRG-----QPLDEDWKSTVQ 926 (1255)
Q Consensus 860 eeIA~~KagI~K~g~~av~~~~qd~~~~~vl~~~A~~~~~~l~~~~~~~--------~~~~~~-----~~v~l~L~G~hq 926 (1255)
|+||++|++|||++.++|++. +++.+.+++.+.+.+.+++++.++... .+.+.+ ..+.++++|.||
T Consensus 153 e~ia~~Ka~I~k~~~~~v~~~-d~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~ 231 (397)
T TIGR01499 153 EEIAWEKAGIIKEGVPIVTGP-QEPEALNVLKKKAQEKGAPLFVVGRDFNYSETDENYLSFSGANLFLEPLALSLLGDHQ 231 (397)
T ss_pred HHHHHHHhCccCCCCCEEEcC-CChHHHHHHHHHHHHcCCCEEEeccceeecccccceEEeecccccccccCCCCCCHHH
Confidence 999999999999999999988 677788888887777677766554211 122221 235678999999
Q ss_pred HHHHHHHHHHHHHHHHhhcchhhhhhHHHHHhhhhhcCCCCCCCCCCCCCCcCCCCCCCCCccccCCCCCCCCccccccc
Q psy15432 927 SINISLAIQLAYLWMFRMNKSAELKSVIDKFLAEMRVSSPNETPGGQGHLSSCETPGGQGHLSFSETPGGQGHLTGNQSS 1006 (1255)
Q Consensus 927 ~~Na~lAiala~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~ 1006 (1255)
++|+++|++++..+...
T Consensus 232 ~~N~~~Aiaa~~~lg~~--------------------------------------------------------------- 248 (397)
T TIGR01499 232 AENAALALAALEVLGKQ--------------------------------------------------------------- 248 (397)
T ss_pred HHHHHHHHHHHHHHHhc---------------------------------------------------------------
Confidence 99999999988863110
Q ss_pred ccCCCCCCCC-HHHHHHHhcCCCCCcEEEEeecCcEEEEEcCcCHHHHHHHHHHHHhhhccccCCCcccCCCCCcEEEEE
Q psy15432 1007 LLMGPHFEID-PKTYRGIKACVWPGRVQVIRKNNFKYFLDGAHTTDSIELCAKWFLRKSEAEANPTQSKSSNVIQRILVF 1085 (1255)
Q Consensus 1007 ~~~~~~~~i~-~~i~~gL~~~~~pGR~E~v~~~~~~vilDgAHNP~S~~a~l~~l~~~~~~~~~~~~~~~~~~~~~vlVf 1085 (1255)
...++ +.+.+||+++.||||||++..++..+|+||||||+|+++++++++... +.+++++||
T Consensus 249 -----~~~i~~~~i~~~L~~~~~pGR~e~i~~~~~~viiD~AHNp~a~~~~l~~l~~~~------------~~~~i~~V~ 311 (397)
T TIGR01499 249 -----RPKLSEEAIRKGLANTIWPGRLEILSEDNPNILLDGAHNPHSAEALAEWFKKRF------------NGRPIILLF 311 (397)
T ss_pred -----cCCCCHHHHHHHHHhCCCCceEEEEecCCCEEEEECCCCHHHHHHHHHHHHHhc------------CCCCeEEEE
Confidence 01245 679999999999999999986567899999999999999999998632 113678999
Q ss_pred ecCCCCChhhhhhhhhcCCCCcEEEEcCCCCcccccccCCCCCcccccccccccCCHHHHHHHHHHHcCCCceEEeecCC
Q psy15432 1086 NVTGERDPTKLLSPLLQSNQFEYILVTPNILTNEIRWRGQPLDEDWKSTVQSINISLAIQLAYLWMFRMNKSAELKRNQS 1165 (1255)
Q Consensus 1086 g~~~drD~~~ll~~L~~~~~~d~vi~t~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 1165 (1255)
|+++|||+.++++.|+.....|.+++++++++...... +.............+..+.+..+. ...+++.+|+=||-
T Consensus 312 G~~~dkd~~~~~~~l~~~~~~d~~~~~~~~~r~~~~~~---i~~~~~~~~~~~~~~~~~ai~~a~-~~~~~d~vlv~GSl 387 (397)
T TIGR01499 312 GALADKDAAAMLAPLKPVVDKEVFVTPFDYPRADDAAD---LAALAETFGKETVEDWREALALAL-NASAEDDILVTGSL 387 (397)
T ss_pred EeeCCCCHHHHHHHHhhccCcEEEEECCCCCCCCCHHH---HHHHHHHcCceecCCHHHHHHHHH-hCCCCCEEEEEccH
Confidence 99999999999999842111246677777776554321 000110001223457777777766 44556788888873
|
A mutation study of the FolC gene of E. coli suggests that both activitities belong to the same active site. Because some examples are monofunctional (and these cannot be separated phylogenetically), the model is treated as subfamily, not equivalog. |
| >PRK10846 bifunctional folylpolyglutamate synthase/ dihydrofolate synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-59 Score=552.68 Aligned_cols=378 Identities=24% Similarity=0.320 Sum_probs=298.0
Q ss_pred cHHHHHHHHHhcchhHHHHHHhhccCCcccccccchHHHHHHHHHhcCcccccccceEEEecCCCCCccHHHHHHHHHHH
Q psy15432 665 SYVDAIKQLNTLQSNIRTIRESKLRKDPVEMQAVQVDQVVQYLGHLNITLDDIKKLNVIHISGTKGKGSTCAYCESILRS 744 (1255)
Q Consensus 665 ~y~~a~~~L~~lqsn~~~l~~~~~~g~~~~~~~~~v~~~~~~L~~Lg~~~~~~~~l~vIhVTGTnGKgST~aml~sILr~ 744 (1255)
+|++++++|.++... +. .++|++|+++|+.||+|+ .++++|||||||||||||+|+++||++
T Consensus 12 ~~~~~~~~l~~~~~~----------~~-----~~~l~~~~~ll~~lg~p~---~~~~~I~VtGTNGKgSt~~~l~~iL~~ 73 (416)
T PRK10846 12 PLASWLSYLENLHSK----------TI-----DLGLERVSQVAARLDLLK---PAPFVFTVAGTNGKGTTCRTLESILMA 73 (416)
T ss_pred HHHHHHHHHHhcccc----------CC-----CCChHHHHHHHHHhCCCc---cCCCEEEEECCCChHHHHHHHHHHHHH
Confidence 577888887776432 22 279999999999999998 567899999999999999999999999
Q ss_pred CCCCeEEEcCcccccccceeeeCCeecChhhhhhHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHHhhhcCCCCEEEEec
Q psy15432 745 HGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTKYFWTVYNALHAKRKHAEDMPAYFKFLTVMSFYVFVKEKPDAVIMEV 824 (1255)
Q Consensus 745 ~G~rtGl~tSPhL~~~~ERI~InG~pIs~~~f~~~~~~v~~~l~~~~~~~~~~pt~Fe~lT~mAf~~F~~~~vD~aVlEV 824 (1255)
+|+|||+||||||.+++|||+|||++|+++.|++++.++..... ...|+|||++|++||.+|.+++||++||||
T Consensus 74 ~G~~vG~~tSphl~~~~eri~i~g~~i~~~~~~~~~~~~~~~~~------~~~~t~fe~~t~~a~~~f~~~~vd~~VlEv 147 (416)
T PRK10846 74 AGYRVGVYSSPHLVRYTERVRIQGQELPESAHTASFAEIEAARG------DISLTYFEYGTLSALWLFKQAQLDVVILEV 147 (416)
T ss_pred cCCCceEECCCCCCCcceEEEECCEECCHHHHHHHHHHHHHHhc------CCCCCHHHHHHHHHHHHHHHcCCCEEEEEe
Confidence 99999999999999999999999999999999999888765542 235899999999999999999999999999
Q ss_pred ccCCccccccccCCCcEEEEcCCCchhhhhcCCCHHHHHHHHhccccCCceEEEccCCCChhHHHHHHHhhhcCCeEEEc
Q psy15432 825 GIGGRYDNTNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIMKPNCIAVTSANQRGPCKQILLETSRALNCVLLEA 904 (1255)
Q Consensus 825 G~GGr~D~TNvi~~P~VavITnIg~DHl~~LG~TleeIA~~KagI~K~g~~av~~~~qd~~~~~vl~~~A~~~~~~l~~~ 904 (1255)
|+||++|+||++ +|+++|||||++||+++||+|+|+||++|++|||++.++|++. ++ ...++.+.|.+.+++++.+
T Consensus 148 glggrld~tn~i-~p~vaviTnI~~DHld~lG~t~e~ia~~Ka~Iik~~~~~V~~~--~d-~~~~~~~~a~~~~~~~~~~ 223 (416)
T PRK10846 148 GLGGRLDATNIV-DADVAVVTSIALDHTDWLGPDRESIGREKAGIFRAEKPAVVGE--PD-MPSTIADVAQEKGALLQRR 223 (416)
T ss_pred cCCCCchhhhcc-CCCEEEECCccHHHHHHhcCCHHHHHHHHHhhhcCCCeEEECC--cc-HhHHHHHHHHHhCCcEEEe
Confidence 999999999999 6999999999999999999999999999999999999998875 22 2345556676667776543
Q ss_pred CCccc-------eeccC--C-ccccCCCchhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHhhhhhcCCCCCCCCCCC
Q psy15432 905 PSILN-------YRWRG--Q-PLDEDWKSTVQSINISLAIQLAYLWMFRMNKSAELKSVIDKFLAEMRVSSPNETPGGQG 974 (1255)
Q Consensus 905 ~~~~~-------~~~~~--~-~v~l~L~G~hq~~Na~lAiala~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 974 (1255)
+.... +.+.. . ...++++ .||..|+++|++++..+
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~N~~~Aia~~~~~---------------------------------- 268 (416)
T PRK10846 224 GVDWNYSVTDHDWAFSDGDGTLENLPLP-NVPLPNAATALAALRAS---------------------------------- 268 (416)
T ss_pred cceeeeeccCceEEEecCccccccCCcc-chHHHHHHHHHHHHHHc----------------------------------
Confidence 22111 11110 0 1134555 47999999999987651
Q ss_pred CCCcCCCCCCCCCccccCCCCCCCCcccccccccCCCCCCCC-HHHHHHHhcCCCCCcEEEEeecCcEEEEEcCcCHHHH
Q psy15432 975 HLSSCETPGGQGHLSFSETPGGQGHLTGNQSSLLMGPHFEID-PKTYRGIKACVWPGRVQVIRKNNFKYFLDGAHTTDSI 1053 (1255)
Q Consensus 975 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~i~-~~i~~gL~~~~~pGR~E~v~~~~~~vilDgAHNP~S~ 1053 (1255)
.++++ +.+.+||+++.||||||++...+ .+|+||||||+|+
T Consensus 269 -------------------------------------~~~i~~~~i~~~L~~~~~~gR~e~~~~~~-~iI~D~AHNp~a~ 310 (416)
T PRK10846 269 -------------------------------------GLEVSEQAIRDGIASAILPGRFQIVSESP-RVILDVAHNPHAA 310 (416)
T ss_pred -------------------------------------CCCCCHHHHHHHHHhCCCCceEEEEcCCC-cEEEECCCCHHHH
Confidence 04566 67999999999999999998654 5999999999999
Q ss_pred HHHHHHHHhhhccccCCCcccCCCCCcEEEEEecCCCCChhhhhhhhhcCCCCcEEEEcC-CCCcccccccCCCCCcccc
Q psy15432 1054 ELCAKWFLRKSEAEANPTQSKSSNVIQRILVFNVTGERDPTKLLSPLLQSNQFEYILVTP-NILTNEIRWRGQPLDEDWK 1132 (1255)
Q Consensus 1054 ~a~l~~l~~~~~~~~~~~~~~~~~~~~~vlVfg~~~drD~~~ll~~L~~~~~~d~vi~t~-~~~~~~~~~~~~~~~~~~~ 1132 (1255)
+++++.++... ..+++++|||+++|||...++..| .+ .+|.+++++ +.+...... .+.
T Consensus 311 ~~l~~~L~~~~------------~~~~ii~Vfg~~gdkd~~~~l~~L-~~-~~d~viv~~~~~~r~~~~~-------~l~ 369 (416)
T PRK10846 311 EYLTGRLKALP------------KNGRVLAVIGMLHDKDIAGTLACL-KS-VVDDWYCAPLEGPRGATAE-------QLA 369 (416)
T ss_pred HHHHHHHHHhc------------CCCCEEEEEEeeCCCCHHHHHHHH-hh-hCCEEEEECCCCCCCCCHH-------HHH
Confidence 99999887642 124689999999999999999888 33 356665554 333322211 111
Q ss_pred cc--cccccCCHHHHHHHHHHHcCCCceEEeecC
Q psy15432 1133 ST--VQSINISLAIQLAYLWMFRMNKSAELKRNQ 1164 (1255)
Q Consensus 1133 ~d--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 1164 (1255)
.. ......+.++.+..+.....+++++|+=||
T Consensus 370 ~~~~~~~~~~~~~~Ai~~a~~~a~~gD~VLi~GS 403 (416)
T PRK10846 370 EHLGNGKSFDSVAQAWDAAMADAKPEDTVLVCGS 403 (416)
T ss_pred HHhhhCcccCCHHHHHHHHHHhcCCCCEEEEECc
Confidence 11 122345788888888777777888888555
|
|
| >PRK00139 murE UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-45 Score=442.00 Aligned_cols=353 Identities=20% Similarity=0.182 Sum_probs=268.7
Q ss_pred eccccccccccccCCCceeEeecccccCCcccccccCCCCCCCcHHHHHHHHHhcchhHHHHHhhhcCCCcccccccchH
Q psy15432 10 KELKLNKDAHRKTLPDKTEVHHGGYKHGAVTPHASRSNKEIPQSYVDAIKQLNTLQSNIRTIRESKLRKDPVEMQAVQVD 89 (1255)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~eai~~L~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 89 (1255)
.+++.+..+||++.|+.+||+.+|.+.+++.|+.+...++.....-+--. ... .+.+ .+.|+
T Consensus 13 ~~i~~i~~DSR~v~~g~lFval~G~~~dGh~fi~~A~~~GA~~~v~~~~~--~~~------------~~~~----~i~V~ 74 (460)
T PRK00139 13 VEITGLTYDSRKVKPGDLFVALPGHKVDGRDFIAQAIANGAAAVVAEADG--EAG------------TGVP----VIIVP 74 (460)
T ss_pred CceeEEEeeccCcCCCCEEEEeCCCcCcHHHHHHHHHHCCCEEEEEcCcc--ccC------------CCce----EEEEC
Confidence 45788899999999999999999999999888666555433211111000 000 0111 26789
Q ss_pred HHHHHHHHhcCCccCCC--CccEEEEcCCCChhHHHHHHHHHHHHCCCCeEEEcCCcccccceeEEeCCeecChhhhhhH
Q psy15432 90 QVVQYLGHLNITLDDIK--KLNVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTKY 167 (1255)
Q Consensus 90 ~~~~~L~~Lg~~~~~~~--~l~vIhVtGTnGKgST~a~l~sIL~~~G~k~Gl~tSPhL~~~rERI~InG~~is~~~ft~~ 167 (1255)
+++++|+.|+..+++.+ ++++||||||||||||++|+++||+++|+++++++||+ ..|++.+++. .
T Consensus 75 d~~~al~~la~~~~~~~~~~~~vI~ITGTnGKTTT~~~l~~iL~~~g~~~~~~gn~~-------~~i~~~~~~~-~---- 142 (460)
T PRK00139 75 DLRKALALLAAAFYGHPSDKLKLIGVTGTNGKTTTAYLLAQILRLLGEKTALIGTLG-------NGIGGELIPS-G---- 142 (460)
T ss_pred CHHHHHHHHHHHHhcChhhccEEEEEECCCCchhHHHHHHHHHHHcCCCEEEECCcc-------cccCCeeccc-C----
Confidence 99999999999888877 88999999999999999999999999999999999999 5578777652 1
Q ss_pred HHHHHHHHHhhhhccCCcchHHHHHHHHhhhhhhccCCCEEEEeeccC----CccccccccCCccEEEEcCCCcchhhhc
Q psy15432 168 FWTVYNALHAKRKHAEDMPAYFKFLTVMSFYVFVKEKPDAVIMEVGIG----GRYDNTNIIPNTAVVGITSLGYDHTAVL 243 (1255)
Q Consensus 168 ~~~v~~~l~~~~~~~~~~p~~Fe~Lt~~A~~~F~~~~vD~aVlEvG~G----Gr~D~tnii~~P~v~vITnIg~DHld~l 243 (1255)
.++.|.+.+..+|.+|.+.++|++|||+|++ +++|.+ +|+++|||||+.||+++|
T Consensus 143 -----------------~~t~~~~~~~~~l~~~~~~~~~~~VlE~~s~~~~~~~l~~~----~p~iaViTnI~~dHl~~~ 201 (460)
T PRK00139 143 -----------------LTTPDALDLQRLLAELVDAGVTYAAMEVSSHALDQGRVDGL----KFDVAVFTNLSRDHLDYH 201 (460)
T ss_pred -----------------CCCcCHHHHHHHHHHHHHCCCCEEEEEcchhhHhhchhcCC----cCCEEEEcCCCcccCCcC
Confidence 1344566666778888999999999999975 466664 469999999999999999
Q ss_pred CCCHHHHHHHHHcccCCCc-eeeeccCCCchHHHHHHHhhhccCceEEEcC-Ccce--------------eeecCccccc
Q psy15432 244 GNTIEEITMQKAGIMKPNC-IAVTSANQRGPCKQILLETSRALNCVLLEAP-SILN--------------YRWRGQPLDE 307 (1255)
Q Consensus 244 G~Tle~Ia~~KagI~k~g~-~~v~~~~q~~e~~~vl~~~a~~~~~~l~~~~-~~~~--------------~~~~~~~i~l 307 (1255)
| |+|+|+.+|++|++... .+|++. +++....+.. . +..+.++ ...+ +.+.. .+.+
T Consensus 202 g-t~e~i~~~K~~i~~~~~~~~v~n~-dd~~~~~~~~-~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l 272 (460)
T PRK00139 202 G-TMEDYLAAKARLFSELGLAAVINA-DDEVGRRLLA-L-----PDAYAVSMAGADLRATDVEYTDSGQTFTLVT-EVES 272 (460)
T ss_pred C-CHHHHHHHHHHHHhcCCCeEEEEc-CcHhHHHHHh-h-----cEEEEecCCCCcEEEEEEEEecCceEEEEEE-EEEe
Confidence 9 99999999999998755 567776 5554433332 1 1222221 1111 11110 3668
Q ss_pred CCCchhHHhhHHHHHHHHHHHHHhhccchhhhhHHHHhhhhhccCCCCCCCCCCCCCCccCCCCCCCCccccCCCCCCCC
Q psy15432 308 DWKSTVQSINISLAIQLAYLWMFRMNKSAELKSVIDKFLAEMRVSSPNETPGGQGHLSSCETPGGQGHLSFSETPGGQGH 387 (1255)
Q Consensus 308 ~l~G~~q~~Na~lAia~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (1255)
+++|.||++|+++|++++..+
T Consensus 273 ~l~G~hn~~NalaAia~a~~l----------------------------------------------------------- 293 (460)
T PRK00139 273 PLIGRFNVSNLLAALAALLAL----------------------------------------------------------- 293 (460)
T ss_pred cccchhHHHHHHHHHHHHHHc-----------------------------------------------------------
Confidence 999999999999999988765
Q ss_pred ccccccccCCCCCCCChHHHHHHHhcCC-CCCceEEEEe-cCcEEEEccCCCHHHHHHHHHHHHhhhhcccccCccCCCC
Q psy15432 388 LTGNQSSLLMGPHFEIDPKTYRGIKACV-WPGRVQVIRK-NNFKYFLDGAHTTDSIELCAKWFLRKSEAEASSSRSVSSC 465 (1255)
Q Consensus 388 ~~~~~~~l~~~~~~~l~e~i~~gL~~~~-~pGR~e~v~~-~~~~vilDgAHnp~si~~~l~~l~~~~~~~~~~~~~~~~~ 465 (1255)
+++ ++++.+||++++ ||||||++.. +++.||+||||||+|+++++++++....
T Consensus 294 ------------gi~-~~~i~~~L~~~~~~~gR~e~~~~~~~~~iI~DyahNP~s~~aal~~l~~~~~------------ 348 (460)
T PRK00139 294 ------------GVP-LEDALAALAKLQGVPGRMERVDAGQGPLVIVDYAHTPDALEKVLEALRPHAK------------ 348 (460)
T ss_pred ------------CCC-HHHHHHHHHhCCCCCCCcEEEEcCCCCEEEEECCCCHHHHHHHHHHHHhhcC------------
Confidence 667 899999999999 9999999985 5788999999999999999999976421
Q ss_pred CCCCCccCCCCCccEEEEEecCCCCChhh--hhHHhhccCCCcEEEEcCCCCCCCC
Q psy15432 466 PLDPTQSKSSNVIQRILVFNVTGERDPTK--LLSPLLQSNQFEYILVTPNILTNES 519 (1255)
Q Consensus 466 ~~~~~~~~~~~~~~~ilVfg~~~drD~~~--ll~~L~~~~~~d~vi~t~~~~~~~~ 519 (1255)
+++++|||++++|+... ++..+ ....+|.+++|.+.++.+.
T Consensus 349 ------------~r~i~VlG~g~~k~~~~~~~~~~~-~~~~~d~vi~~~~~~~~~~ 391 (460)
T PRK00139 349 ------------GRLICVFGCGGDRDKGKRPLMGAI-AERLADVVIVTSDNPRSED 391 (460)
T ss_pred ------------CcEEEEECCCCCCchhhhHHHHHH-HHHcCCEEEEECCCCCCCC
Confidence 17899999988887553 33444 3456899999977666544
|
|
| >PRK14022 UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-43 Score=426.12 Aligned_cols=355 Identities=17% Similarity=0.154 Sum_probs=253.3
Q ss_pred eccccccccccccCCCceeEeecccccCCcccccccCCCCCCCcHHHHHHHHHhcchhHHHHHhhhcCCCcccccccchH
Q psy15432 10 KELKLNKDAHRKTLPDKTEVHHGGYKHGAVTPHASRSNKEIPQSYVDAIKQLNTLQSNIRTIRESKLRKDPVEMQAVQVD 89 (1255)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~eai~~L~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 89 (1255)
.+++.+..+||++.|+.+||+.+|.+ ++.|+.+...++...-..+- ....+.+ .+.|+
T Consensus 32 ~~i~~i~~DSR~v~~g~lFva~~~~~--gh~fi~~A~~~GA~~~v~~~----------------~~~~~~~----~i~V~ 89 (481)
T PRK14022 32 VQFDDISYDSRTADEGTLFFAKGAYF--KHKFLQNAITQGLKLYVSEK----------------DYEVGIP----QVIVP 89 (481)
T ss_pred ccEEEEEecCcCCCCCCEEEEcCCCc--hHHHHHHHHHCCCeEEEEec----------------ccCCCCc----EEEEC
Confidence 47888999999999999999996655 66765554444322111110 0000112 26789
Q ss_pred HHHHHHHHhcCCccCC--CCccEEEEcCCCChhHHHHHHHHHHHHCCCCeEEEcCCcccccceeEEeCCeecChhhhhhH
Q psy15432 90 QVVQYLGHLNITLDDI--KKLNVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTKY 167 (1255)
Q Consensus 90 ~~~~~L~~Lg~~~~~~--~~l~vIhVtGTnGKgST~a~l~sIL~~~G~k~Gl~tSPhL~~~rERI~InG~~is~~~ft~~ 167 (1255)
+++++|+.|+..+++. .++++||||||||||||++|+++||++.|+++++.++.. ..+++...+ ..++.+
T Consensus 90 d~~~al~~la~~~~~~p~~~~~vIgITGTnGKTTT~~~l~~iL~~~g~~~~~~g~~~-------~~ig~~~~~-~~~~~p 161 (481)
T PRK14022 90 DIKKAMSLIAMEFYDNPQHKLKLLAFTGTKGKTTAAYFAYHILKQLHKPAMLSTMNT-------TLDGETFFK-SALTTP 161 (481)
T ss_pred CHHHHHHHHHHHHhcChhhccEEEEEeCCCcHHHHHHHHHHHHHHCCCCEEEEeeee-------eccCCeeee-CCCCCc
Confidence 9999999999888776 478999999999999999999999999998776665433 223332221 222222
Q ss_pred HHHHHHHHHhhhhccCCcchHHHHHHHHhhhhhhccCCCEEEEeeccC----CccccccccCCccEEEEcCCCcchhhhc
Q psy15432 168 FWTVYNALHAKRKHAEDMPAYFKFLTVMSFYVFVKEKPDAVIMEVGIG----GRYDNTNIIPNTAVVGITSLGYDHTAVL 243 (1255)
Q Consensus 168 ~~~v~~~l~~~~~~~~~~p~~Fe~Lt~~A~~~F~~~~vD~aVlEvG~G----Gr~D~tnii~~P~v~vITnIg~DHld~l 243 (1255)
..+++|+++..+ .+.++|++|||+|++ +|+|.+ +|+++|||||+.||+++|
T Consensus 162 ----------------~~~~l~~~~~~~-----~e~g~~~~v~EvsS~~~~~~r~~~~----~pdiaViTNI~~DHld~L 216 (481)
T PRK14022 162 ----------------ESLDLFKMMAEA-----VDNGMTHLIMEVSSQAYLVGRVYGL----TFDVGVFLNITPDHIGPI 216 (481)
T ss_pred ----------------hHHHHHHHHHHH-----HHCCCCEEEEEechhHHHhccccCc----cccEEEEcCCCcccCCCC
Confidence 235677777654 788999999999976 455553 589999999999999994
Q ss_pred -CCCHHHHHHHHHcccCCCceeeeccCCCchHHHHHHHhhhccCceEEEcCCcc------eeeecC-----cccccCCCc
Q psy15432 244 -GNTIEEITMQKAGIMKPNCIAVTSANQRGPCKQILLETSRALNCVLLEAPSIL------NYRWRG-----QPLDEDWKS 311 (1255)
Q Consensus 244 -G~Tle~Ia~~KagI~k~g~~~v~~~~q~~e~~~vl~~~a~~~~~~l~~~~~~~------~~~~~~-----~~i~l~l~G 311 (1255)
+.|+|+|+.+|++||+++.++|++. ++++....+ ..+....+..+...... .+.+.. ..+.++++|
T Consensus 217 ~~~t~e~~a~aK~~i~~~~~~~Vln~-d~d~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G 294 (481)
T PRK14022 217 EHPTFEDYFYHKRLLMENSKAVVVNS-DMDHFSELL-EQVTPQEHDFYGIDSENQIMASNAFSFEATGKLAGTYDIQLIG 294 (481)
T ss_pred CCCCHHHHHHHHHHHhcCCCEEEEEc-CCCHHHHHH-HHhcCCCEEEEecCCccceEEEEEEEEEEcccCCceEEEEEec
Confidence 2499999999999999988888876 434443332 22222222233322111 122211 135678999
Q ss_pred hhHHhhHHHHHHHHHHHHHhhccchhhhhHHHHhhhhhccCCCCCCCCCCCCCCccCCCCCCCCccccCCCCCCCCcccc
Q psy15432 312 TVQSINISLAIQLAYLWMFRMNKSAELKSVIDKFLAEMRVSSPNETPGGQGHLSSCETPGGQGHLSFSETPGGQGHLTGN 391 (1255)
Q Consensus 312 ~~q~~Na~lAia~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (1255)
.||++|+++|++++..+
T Consensus 295 ~hnv~NalaAia~a~~l--------------------------------------------------------------- 311 (481)
T PRK14022 295 KFNQENAMAAGLACLRL--------------------------------------------------------------- 311 (481)
T ss_pred hhhHHHHHHHHHHHHHc---------------------------------------------------------------
Confidence 99999999999988764
Q ss_pred ccccCCCCCCCChHHHHHHHhcCCCCCceEEEEe-cCcEEEEccCCCHHHHHHHHHHHHhhhhcccccCccCCCCCCCCC
Q psy15432 392 QSSLLMGPHFEIDPKTYRGIKACVWPGRVQVIRK-NNFKYFLDGAHTTDSIELCAKWFLRKSEAEASSSRSVSSCPLDPT 470 (1255)
Q Consensus 392 ~~~l~~~~~~~l~e~i~~gL~~~~~pGR~e~v~~-~~~~vilDgAHnp~si~~~l~~l~~~~~~~~~~~~~~~~~~~~~~ 470 (1255)
|++ ++++.+||++..||||||++.. +++.+|+||||||+|+++++++++....
T Consensus 312 --------gi~-~~~i~~~L~~~~~~gR~e~i~~~~g~~vi~DyahNP~s~~aal~~l~~~~~----------------- 365 (481)
T PRK14022 312 --------GAS-LEDIQKGIAQTPVPGRMEVLTQSNGAKVFIDYAHNGDSLNKLIDVVEEHQK----------------- 365 (481)
T ss_pred --------CCC-HHHHHHHhccCCCCCCeEEEECCCCCEEEEECCCCHHHHHHHHHHHhhhCC-----------------
Confidence 567 8999999999449999999985 5778999999999999999999976321
Q ss_pred ccCCCCCccEEEEEecCCCCChhh---hhHHhhccCCCc-EEEEcCCCCCCCC
Q psy15432 471 QSKSSNVIQRILVFNVTGERDPTK---LLSPLLQSNQFE-YILVTPNILTNES 519 (1255)
Q Consensus 471 ~~~~~~~~~~ilVfg~~~drD~~~---ll~~L~~~~~~d-~vi~t~~~~~~~~ 519 (1255)
+|+++|||++++|+..+ |.+.+ . ...+ .||+|+++++.+.
T Consensus 366 -------~r~i~V~G~~~e~g~~~~~~~~~~~-~-~~~~~~vi~~~~~~r~e~ 409 (481)
T PRK14022 366 -------GKLILLLGAAGNKGESRRPDFGRVA-N-RHPYLQVILTADDPNNED 409 (481)
T ss_pred -------CCEEEEECCCCCCCcchhHHHHHHH-H-hcCCceEEEccCCCCCCC
Confidence 27899999999998776 55555 2 2334 3778887777655
|
|
| >PRK00139 murE UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-42 Score=416.21 Aligned_cols=394 Identities=19% Similarity=0.162 Sum_probs=281.9
Q ss_pred ceEEEecccccccccceeeccCCCCCCCCCCcccHHHHHHHHHhcchhHHHHHHhhccCC-cccccccchHHHHHHHHHh
Q psy15432 632 YHILVTGSLHLVGAFLNVLITPHASRSNKEIPQSYVDAIKQLNTLQSNIRTIRESKLRKD-PVEMQAVQVDQVVQYLGHL 710 (1255)
Q Consensus 632 ~~vlvtGSlhLVGgvL~~l~~~ha~~~~~~~~~~y~~a~~~L~~lqsn~~~l~~~~~~g~-~~~~~~~~v~~~~~~L~~L 710 (1255)
..=+.+.|+.+..|.|++..++..+..+ +++.+.-.+++..--+.+... ..+.+...|++++++|++|
T Consensus 15 i~~i~~DSR~v~~g~lFval~G~~~dGh-----------~fi~~A~~~GA~~~v~~~~~~~~~~~~~i~V~d~~~al~~l 83 (460)
T PRK00139 15 ITGLTYDSRKVKPGDLFVALPGHKVDGR-----------DFIAQAIANGAAAVVAEADGEAGTGVPVIIVPDLRKALALL 83 (460)
T ss_pred eeEEEeeccCcCCCCEEEEeCCCcCcHH-----------HHHHHHHHCCCEEEEEcCccccCCCceEEEECCHHHHHHHH
Confidence 3347889999999999999887653333 333332222211000000000 0012347899999999999
Q ss_pred cCcccccc--cceEEEecCCCCCccHHHHHHHHHHHCCCCeEEEcCcccccccceeeeCCeecChhhhhhHHHHHHHHHH
Q psy15432 711 NITLDDIK--KLNVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTKYFWTVYNALH 788 (1255)
Q Consensus 711 g~~~~~~~--~l~vIhVTGTnGKgST~aml~sILr~~G~rtGl~tSPhL~~~~ERI~InG~pIs~~~f~~~~~~v~~~l~ 788 (1255)
+..+++.. ++++||||||||||||++|+++||+++|+++++++||+ +.|++.+++..
T Consensus 84 a~~~~~~~~~~~~vI~ITGTnGKTTT~~~l~~iL~~~g~~~~~~gn~~-------~~i~~~~~~~~-------------- 142 (460)
T PRK00139 84 AAAFYGHPSDKLKLIGVTGTNGKTTTAYLLAQILRLLGEKTALIGTLG-------NGIGGELIPSG-------------- 142 (460)
T ss_pred HHHHhcChhhccEEEEEECCCCchhHHHHHHHHHHHcCCCEEEECCcc-------cccCCeecccC--------------
Confidence 87776554 78999999999999999999999999999999999998 34677665421
Q ss_pred HHhhcCCCCCcHHHHHHHHHHHhhhcCCCCEEEEecccC----CccccccccCCCcEEEEcCCCchhhhhcCCCHHHHHH
Q psy15432 789 AKRKHAEDMPAYFKFLTVMSFYVFVKEKPDAVIMEVGIG----GRYDNTNIIPNTAVVGITSLGYDHTAVLGNTIEEITM 864 (1255)
Q Consensus 789 ~~~~~~~~~pt~Fe~lT~mAf~~F~~~~vD~aVlEVG~G----Gr~D~TNvi~~P~VavITnIg~DHl~~LG~TleeIA~ 864 (1255)
..++|.+.++.+|.+|.+.++|++|+|||++ +++|.+ +|+++|||||+.||+++|| |+|+|+.
T Consensus 143 --------~~t~~~~~~~~~l~~~~~~~~~~~VlE~~s~~~~~~~l~~~----~p~iaViTnI~~dHl~~~g-t~e~i~~ 209 (460)
T PRK00139 143 --------LTTPDALDLQRLLAELVDAGVTYAAMEVSSHALDQGRVDGL----KFDVAVFTNLSRDHLDYHG-TMEDYLA 209 (460)
T ss_pred --------CCCcCHHHHHHHHHHHHHCCCCEEEEEcchhhHhhchhcCC----cCCEEEEcCCCcccCCcCC-CHHHHHH
Confidence 2567888888899999999999999999975 345553 5899999999999999999 9999999
Q ss_pred HHhccccCCc-eEEEccCCCChhHHHHHHHhhhcCCeEEEcC-Cccce-------eccCC------ccccCCCchhHHHH
Q psy15432 865 QKAGIMKPNC-IAVTSANQRGPCKQILLETSRALNCVLLEAP-SILNY-------RWRGQ------PLDEDWKSTVQSIN 929 (1255)
Q Consensus 865 ~KagI~K~g~-~av~~~~qd~~~~~vl~~~A~~~~~~l~~~~-~~~~~-------~~~~~------~v~l~L~G~hq~~N 929 (1255)
+|++|++... .+|++. +++....+.. .+ ..+.++ ...++ ...+. .+.++++|.||+.|
T Consensus 210 ~K~~i~~~~~~~~v~n~-dd~~~~~~~~-~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~hn~~N 282 (460)
T PRK00139 210 AKARLFSELGLAAVINA-DDEVGRRLLA-LP-----DAYAVSMAGADLRATDVEYTDSGQTFTLVTEVESPLIGRFNVSN 282 (460)
T ss_pred HHHHHHhcCCCeEEEEc-CcHhHHHHHh-hc-----EEEEecCCCCcEEEEEEEEecCceEEEEEEEEEecccchhHHHH
Confidence 9999998654 778887 4444433332 11 111111 00001 00111 36688999999999
Q ss_pred HHHHHHHHHHHHHhhcchhhhhhHHHHHhhhhhcCCCCCCCCCCCCCCcCCCCCCCCCccccCCCCCCCCcccccccccC
Q psy15432 930 ISLAIQLAYLWMFRMNKSAELKSVIDKFLAEMRVSSPNETPGGQGHLSSCETPGGQGHLSFSETPGGQGHLTGNQSSLLM 1009 (1255)
Q Consensus 930 a~lAiala~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~ 1009 (1255)
+++|++++..
T Consensus 283 alaAia~a~~---------------------------------------------------------------------- 292 (460)
T PRK00139 283 LLAALAALLA---------------------------------------------------------------------- 292 (460)
T ss_pred HHHHHHHHHH----------------------------------------------------------------------
Confidence 9999998875
Q ss_pred CCCCCCC-HHHHHHHhcCC-CCCcEEEEee-cCcEEEEEcCcCHHHHHHHHHHHHhhhccccCCCcccCCCCCcEEEEEe
Q psy15432 1010 GPHFEID-PKTYRGIKACV-WPGRVQVIRK-NNFKYFLDGAHTTDSIELCAKWFLRKSEAEANPTQSKSSNVIQRILVFN 1086 (1255)
Q Consensus 1010 ~~~~~i~-~~i~~gL~~~~-~pGR~E~v~~-~~~~vilDgAHNP~S~~a~l~~l~~~~~~~~~~~~~~~~~~~~~vlVfg 1086 (1255)
+|++ +++.+||++++ ||||||++.. ++.++|+||||||+||++++++++... ++++++|||
T Consensus 293 ---lgi~~~~i~~~L~~~~~~~gR~e~~~~~~~~~iI~DyahNP~s~~aal~~l~~~~-------------~~r~i~VlG 356 (460)
T PRK00139 293 ---LGVPLEDALAALAKLQGVPGRMERVDAGQGPLVIVDYAHTPDALEKVLEALRPHA-------------KGRLICVFG 356 (460)
T ss_pred ---cCCCHHHHHHHHHhCCCCCCCcEEEEcCCCCEEEEECCCCHHHHHHHHHHHHhhc-------------CCcEEEEEC
Confidence 4566 67999999999 9999999985 577899999999999999999997642 146899999
Q ss_pred cCCCCChhh--hhhhhhcCCCCcEEEEcCCCCcccccccCCCCCcccccccccccCCHHHHHHHHHHHcCCCceEEeecC
Q psy15432 1087 VTGERDPTK--LLSPLLQSNQFEYILVTPNILTNEIRWRGQPLDEDWKSTVQSINISLAIQLAYLWMFRMNKSAELKRNQ 1164 (1255)
Q Consensus 1087 ~~~drD~~~--ll~~L~~~~~~d~vi~t~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 1164 (1255)
++++|+... ++..+ ....+|.++++++.+....... +-+.+......+..+.++.+..+.....+++++|+-|.
T Consensus 357 ~g~~k~~~~~~~~~~~-~~~~~d~vi~~~~~~~~~~~~~---i~~~~~~~~~~~~~d~~~Ai~~~~~~~~~gDvVLv~G~ 432 (460)
T PRK00139 357 CGGDRDKGKRPLMGAI-AERLADVVIVTSDNPRSEDPAA---IIADILAGIYDVIEDRAEAIRYAIAQAKPGDVVLIAGK 432 (460)
T ss_pred CCCCCchhhhHHHHHH-HHHcCCEEEEECCCCCCCCHHH---HHHHHHhCCCcccCCHHHHHHHHHHhcCCCCEEEEEEc
Confidence 988887652 33343 3455799999987665532110 00111111112446888899889888888899999887
Q ss_pred CCC
Q psy15432 1165 SSL 1167 (1255)
Q Consensus 1165 ~~~ 1167 (1255)
+.-
T Consensus 433 G~e 435 (460)
T PRK00139 433 GHE 435 (460)
T ss_pred cCc
Confidence 653
|
|
| >COG0769 MurE UDP-N-acetylmuramyl tripeptide synthase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-41 Score=406.33 Aligned_cols=404 Identities=19% Similarity=0.167 Sum_probs=308.6
Q ss_pred ccccccccccCCCceeEeecccccCCcccccccCCCCCCCcHHHHHHHHHhcchhHHHHHhhhcCCCcccccccchHHHH
Q psy15432 13 KLNKDAHRKTLPDKTEVHHGGYKHGAVTPHASRSNKEIPQSYVDAIKQLNTLQSNIRTIRESKLRKDPVEMQAVQVDQVV 92 (1255)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~eai~~L~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 92 (1255)
++++.+||++.++.+|++..|.+-++..+.......+....--|.-. .+. ..+.+ -..+++++
T Consensus 11 ~~l~~dsr~v~~g~lf~a~~g~~~~g~~~~~~a~~~Gavav~~~~~~---~~~----------~~~~~----vi~V~~~~ 73 (475)
T COG0769 11 TGLTLDSRKVKEGDLFVAKPGTKVDGHDFIAGAIAPGAVAVVVEKDI---KLA----------EAGVP----VIVVTGTN 73 (475)
T ss_pred ccceeehhhcCCCcEEEEEeccccccccchHhHhhCCCEEEEecccc---ccc----------ccCCC----EEEEcCcH
Confidence 67789999999999999999997777776555444332211111000 000 01111 15678888
Q ss_pred HHHHHhcCCccCCC--CccEEEEcCCCChhHHHHHHHHHHHHCCCCeEEEcCCcccccceeEEe-CCeecChhhhhhHHH
Q psy15432 93 QYLGHLNITLDDIK--KLNVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKL-NGEPISYDKFTKYFW 169 (1255)
Q Consensus 93 ~~L~~Lg~~~~~~~--~l~vIhVtGTnGKgST~a~l~sIL~~~G~k~Gl~tSPhL~~~rERI~I-nG~~is~~~ft~~~~ 169 (1255)
..+..+...++.+| ++++|+||||||||||+.++.++++..|.+++++++-. ..+ .|... +..+++|
T Consensus 74 ~~~~~~a~~~y~~ps~~l~vigvTGTNgKTt~t~~~~~~~~~~g~~~~~~gT~g-------~~~~~~~~~-~~~~tTP-- 143 (475)
T COG0769 74 GKLTTLALAFYGLPSGKLKVIGVTGTNGKTTTTSLLAQILKKLGKKTALIGTEG-------DELSPGILE-PTGLTTP-- 143 (475)
T ss_pred HHHHHHHHHhccCcccCceEEEEcCCCcHHHHHHHHHHHHHhcCCceEEEEEEe-------eeccCCccc-ccCCCCc--
Confidence 88888888888875 58999999999999999999999999999999998764 333 24333 2345554
Q ss_pred HHHHHHHhhhhccCCcchHHHHHHHHhhhhhhccCCCEEEEeeccC----CccccccccCCccEEEEcCCCcchhhhcCC
Q psy15432 170 TVYNALHAKRKHAEDMPAYFKFLTVMSFYVFVKEKPDAVIMEVGIG----GRYDNTNIIPNTAVVGITSLGYDHTAVLGN 245 (1255)
Q Consensus 170 ~v~~~l~~~~~~~~~~p~~Fe~Lt~~A~~~F~~~~vD~aVlEvG~G----Gr~D~tnii~~P~v~vITnIg~DHld~lG~ 245 (1255)
+.+.++.++.-| .+.++++++||++++ +|.+.+.+ +++++|||+.||+|+||
T Consensus 144 --------------~~~~l~~~~~~~-----~d~~~e~~vmEvssh~l~~~Rv~~~~f----~v~~ftnls~DHlD~h~- 199 (475)
T COG0769 144 --------------EALDLQNLLRDL-----LDRGAEIAVMEVSSHGLVQGRVEGVTF----DVGVFTNLSRDHLDYHG- 199 (475)
T ss_pred --------------cHHHHHHHHHHH-----HHcCCcEEEEEeehhHHHhCCccCceE----EEEeccccCchhhcccC-
Confidence 566777777777 999999999999999 89999998 78899999999999999
Q ss_pred CHHHHHHHHHcccC---CCceeeeccCCCchHHHHHHHhhhccCceEEEcCCcc----------e-----------eeec
Q psy15432 246 TIEEITMQKAGIMK---PNCIAVTSANQRGPCKQILLETSRALNCVLLEAPSIL----------N-----------YRWR 301 (1255)
Q Consensus 246 Tle~Ia~~KagI~k---~g~~~v~~~~q~~e~~~vl~~~a~~~~~~l~~~~~~~----------~-----------~~~~ 301 (1255)
|+|+|+..|..+|+ ++..+|+++ +++.. ..++..........+.++... . +.+.
T Consensus 200 t~e~Y~~aK~~lf~~~~~~~~~Vin~-dd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~~~~~~~~ 277 (475)
T COG0769 200 TMEYYGAAKAVLFESLPHSGEAVINP-DDGHG-LDYKERLKNALGDYITYGCDFKRPDLDYRGIEESSSGSDFVFEPSGG 277 (475)
T ss_pred cHHHHHHHHHHHHhhcCCCccEEEcc-CCchH-HHHHHHHHhcCCCEEEeCCCCchhhhhhccceeeeccceeEEEccCC
Confidence 99999999999985 566788888 54444 233333332221222222110 0 1122
Q ss_pred CcccccCCCchhHHhhHHHHHHHHHHHHHhhccchhhhhHHHHhhhhhccCCCCCCCCCCCCCCccCCCCCCCCccccCC
Q psy15432 302 GQPLDEDWKSTVQSINISLAIQLAYLWMFRMNKSAELKSVIDKFLAEMRVSSPNETPGGQGHLSSCETPGGQGHLSFSET 381 (1255)
Q Consensus 302 ~~~i~l~l~G~~q~~Na~lAia~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (1255)
...+.++|+|.||++|+++|++++..+
T Consensus 278 ~~~~~~~L~G~fNv~NaLaA~a~~~~l----------------------------------------------------- 304 (475)
T COG0769 278 IGEYELPLPGLFNVYNALAAVAAALAL----------------------------------------------------- 304 (475)
T ss_pred ceeEeccccchhHHHHHHHHHHHHHHc-----------------------------------------------------
Confidence 246789999999999999999988764
Q ss_pred CCCCCCccccccccCCCCCCCChHHHHHHHhcCC-CCCceEEEEecCcEEEEccCCCHHHHHHHHHHHHhhhhcccccCc
Q psy15432 382 PGGQGHLTGNQSSLLMGPHFEIDPKTYRGIKACV-WPGRVQVIRKNNFKYFLDGAHTTDSIELCAKWFLRKSEAEASSSR 460 (1255)
Q Consensus 382 ~~~~~~~~~~~~~l~~~~~~~l~e~i~~gL~~~~-~pGR~e~v~~~~~~vilDgAHnp~si~~~l~~l~~~~~~~~~~~~ 460 (1255)
|++ .+.|+++|++++ +|||||.+..+++.++|||||||+|++.+++.++....
T Consensus 305 ------------------G~~-~e~i~~~l~~~~~v~GRmE~v~~~~~~v~VDyAHnPd~le~~L~~~~~~~~------- 358 (475)
T COG0769 305 ------------------GVD-LEDILAGLETLKPVPGRMELVNIGGKLVIVDYAHNPDGLEKALRAVRLHAA------- 358 (475)
T ss_pred ------------------CCC-HHHHHHHHHhcCCCCCcceEecCCCCeEEEEeccChHHHHHHHHHHHhhcC-------
Confidence 677 999999999999 99999999988889999999999999999999984322
Q ss_pred cCCCCCCCCCccCCCCCccEEEEEecCCCCChhhhhHHhh---ccCCCcEEEEcCCCCCCCCCCCCcCCCCccccccccc
Q psy15432 461 SVSSCPLDPTQSKSSNVIQRILVFNVTGERDPTKLLSPLL---QSNQFEYILVTPNILTNESSPDTQYGGNRTIDRFGVK 537 (1255)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~~ilVfg~~~drD~~~ll~~L~---~~~~~d~vi~t~~~~~~~~~~~~~~~~~~~~~~~~~~ 537 (1255)
.++++||||.||||..+ +++| +...+|.+|+|+++||.|+|.
T Consensus 359 -----------------g~li~VfG~gGDrD~~k--r~~mg~ia~~~ad~vivt~dnpR~edp~---------------- 403 (475)
T COG0769 359 -----------------GRLIVVFGCGGDRDKSK--RPDMGAIAEQLADIVIVTSDNPRSEDPA---------------- 403 (475)
T ss_pred -----------------CcEEEEECccCCCCccc--ccchHHHHHhcCCcEEEcCCCCCCcCHH----------------
Confidence 27999999999999988 8887 577899999999999998851
Q ss_pred ccccCCCCCCCCCCCCCCCCCCCCCcccCCCCCcccCCCCCCCcccccccccccchhhHHHHHHhhccCCCcEEEcCCHH
Q psy15432 538 LDSRTAAPNGGHEPGRPNVGQGGGGFQSRSGDNSIRSNANPLSSVDCHNVNDQSNSFHKIATVASALSQRSKVVEFSSVL 617 (1255)
Q Consensus 538 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~si~ 617 (1255)
.+++++..++....++.+..|++
T Consensus 404 ---------------------------------------------------------~i~~~i~~g~~~~~~~~~~~dr~ 426 (475)
T COG0769 404 ---------------------------------------------------------VILADILAGIEAPEKYEIIEDRE 426 (475)
T ss_pred ---------------------------------------------------------HHHHHHHhccCCccceecchhHH
Confidence 23445555554444577888999
Q ss_pred HHHHHHhccCCCCCceEEEecccc
Q psy15432 618 DTYNFKYGLDPSKEYHILVTGSLH 641 (1255)
Q Consensus 618 ~ai~~~~~~~~~~~~~vlvtGSlh 641 (1255)
+||+.+..++. +.+.|+++|+-|
T Consensus 427 ~AI~~ai~~a~-~~D~vliagkGh 449 (475)
T COG0769 427 EAIRKALDLAK-EGDVVLIAGKGH 449 (475)
T ss_pred HHHHHHHHhhc-cCCEEEEeeccc
Confidence 99999999984 677789998865
|
|
| >TIGR01143 murF UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-41 Score=402.86 Aligned_cols=381 Identities=18% Similarity=0.149 Sum_probs=269.0
Q ss_pred ecccccccccceeeccCCCCCCCCCCcccHHHHHHHHHhcchhHHHHHHhhccC-CcccccccchHHHHHHHHHhcCccc
Q psy15432 637 TGSLHLVGAFLNVLITPHASRSNKEIPQSYVDAIKQLNTLQSNIRTIRESKLRK-DPVEMQAVQVDQVVQYLGHLNITLD 715 (1255)
Q Consensus 637 tGSlhLVGgvL~~l~~~ha~~~~~~~~~~y~~a~~~L~~lqsn~~~l~~~~~~g-~~~~~~~~~v~~~~~~L~~Lg~~~~ 715 (1255)
+.|+.+..|.|++..++..++.+ +++.+...+++..--+.+.. ...+.+...|++++++|++|+..++
T Consensus 1 ~DSR~v~~g~lFval~G~~~dGh-----------~fi~~A~~~Ga~~~i~~~~~~~~~~~~~i~V~d~~~al~~la~~~~ 69 (417)
T TIGR01143 1 TDSRAIKPGDLFIALKGERFDGH-----------DFVEQALAAGAVAVLVDREVGPDNGLPQILVDDTLEALQALASAKR 69 (417)
T ss_pred CCCCccCCCcEEEEeCCCCCCHH-----------HHHHHHHHCCCEEEEEcccccCCCCCCEEEECCHHHHHHHHHHHHH
Confidence 46888888999999887654433 33332211111100000000 0001234789999999999998877
Q ss_pred ccccceEEEecCCCCCccHHHHHHHHHHHCCCCeEEEcCcccccccceeeeCCeecChhhhhhHHHHHHHHHHHHhhcCC
Q psy15432 716 DIKKLNVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTKYFWTVYNALHAKRKHAE 795 (1255)
Q Consensus 716 ~~~~l~vIhVTGTnGKgST~aml~sILr~~G~rtGl~tSPhL~~~~ERI~InG~pIs~~~f~~~~~~v~~~l~~~~~~~~ 795 (1255)
+..+.++|+||||||||||++|+++||+..|+ .+.|+. ++|++| |.|.+
T Consensus 70 ~~~~~~vI~VTGTnGKTTt~~ll~~iL~~~g~---~~~t~g--n~n~~i---g~p~~----------------------- 118 (417)
T TIGR01143 70 AKFSGKVIGITGSSGKTTTKEMLAAILSHKYK---VFATPG--NFNNEI---GLPLT----------------------- 118 (417)
T ss_pred hhCCCCEEEEcCCCchhHHHHHHHHHHhccCc---EecCCC--cCCCcc---chhHH-----------------------
Confidence 76678999999999999999999999999986 456775 666666 43322
Q ss_pred CCCcHHHHHHHHHHHhhhcCCCCEEEEecccCCccc---cccccCCCcEEEEcCCCchhhhhcCCCHHHHHHHHhcccc-
Q psy15432 796 DMPAYFKFLTVMSFYVFVKEKPDAVIMEVGIGGRYD---NTNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIMK- 871 (1255)
Q Consensus 796 ~~pt~Fe~lT~mAf~~F~~~~vD~aVlEVG~GGr~D---~TNvi~~P~VavITnIg~DHl~~LG~TleeIA~~KagI~K- 871 (1255)
+ .+.+.++|++|||+|+++..+ .++.+ +|+++|||||+.||+++|| |+|+|+.+|+.||+
T Consensus 119 ----------~----l~~~~~~~~~VlE~g~s~~g~~~~~~~~~-~p~vaviTNi~~dHld~~g-s~e~~~~aK~~l~~~ 182 (417)
T TIGR01143 119 ----------L----LRAPGDHDYAVLEMGASHPGEIAYLAEIA-KPDIAVITNIGPAHLEGFG-SLEGIAEAKGEILQG 182 (417)
T ss_pred ----------H----hcCCCCCeEEEEEeCCCCCCcHHHHhCcc-CCCEEEEcCCcHHHhhhcC-CHHHHHHHHHHHHcc
Confidence 0 136789999999999775444 45666 7999999999999999999 99999999999996
Q ss_pred --CCceEEEccCCCChhHHHHHHHhhhcCCeEEEcCC---------------c-cceec--cCC--ccccCCCchhHHHH
Q psy15432 872 --PNCIAVTSANQRGPCKQILLETSRALNCVLLEAPS---------------I-LNYRW--RGQ--PLDEDWKSTVQSIN 929 (1255)
Q Consensus 872 --~g~~av~~~~qd~~~~~vl~~~A~~~~~~l~~~~~---------------~-~~~~~--~~~--~v~l~L~G~hq~~N 929 (1255)
+++.+|++. |++....+...+. +++++.++. . ..+.+ .+. .+.++++|.||++|
T Consensus 183 ~~~~~~~vln~--Dd~~~~~~~~~~~--~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~G~hn~~N 258 (417)
T TIGR01143 183 LKENGIAVINA--DDPAFAKFAKRLP--NKAILSFGFEGGDFSAADISYSALGSTGFTLVAPGGEFEVSLPLLGRHNVMN 258 (417)
T ss_pred cCCCCEEEEeC--CcHHHHHHHHhcc--CCcEEEECCCCCcEEEEEEEEcCCCCEEEEEEeCCceEEEEccCCcHHHHHH
Confidence 367888887 4455555544332 122222211 0 01111 111 46679999999999
Q ss_pred HHHHHHHHHHHHHhhcchhhhhhHHHHHhhhhhcCCCCCCCCCCCCCCcCCCCCCCCCccccCCCCCCCCcccccccccC
Q psy15432 930 ISLAIQLAYLWMFRMNKSAELKSVIDKFLAEMRVSSPNETPGGQGHLSSCETPGGQGHLSFSETPGGQGHLTGNQSSLLM 1009 (1255)
Q Consensus 930 a~lAiala~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~ 1009 (1255)
+++|++++..
T Consensus 259 ~laAia~~~~---------------------------------------------------------------------- 268 (417)
T TIGR01143 259 ALAAAALALE---------------------------------------------------------------------- 268 (417)
T ss_pred HHHHHHHHHH----------------------------------------------------------------------
Confidence 9999998875
Q ss_pred CCCCCCC-HHHHHHHhcCC-CCCcEEEEeecCcEEEEE-cCcCHHHHHHHHHHHHhhhccccCCCcccCCCCCcEEEEEe
Q psy15432 1010 GPHFEID-PKTYRGIKACV-WPGRVQVIRKNNFKYFLD-GAHTTDSIELCAKWFLRKSEAEANPTQSKSSNVIQRILVFN 1086 (1255)
Q Consensus 1010 ~~~~~i~-~~i~~gL~~~~-~pGR~E~v~~~~~~vilD-gAHNP~S~~a~l~~l~~~~~~~~~~~~~~~~~~~~~vlVfg 1086 (1255)
+|++ +++.++|++++ +|||||+...++.++|+| |||||+|+++++++++... +++++|||
T Consensus 269 ---lGi~~~~i~~~l~~~~~~~gR~e~~~~~~~~vidDsya~np~s~~~al~~l~~~~--------------~r~i~VlG 331 (417)
T TIGR01143 269 ---LGIPLEEIAEGLAELKLVKGRFEIQTKNGLTLIDDTYNANPDSMRAALDALARFP--------------GKKILVLG 331 (417)
T ss_pred ---cCCCHHHHHHHHHhCCCCCCceeEEcCCCcEEEEcCCCCCHHHHHHHHHHHHhCC--------------CCEEEEEc
Confidence 4666 67999999999 999999544457888999 9999999999999997532 36899999
Q ss_pred cC---CCCChh---hhhhhhhcCCCCcEEEEcCCCCcccccccCCCCCcccccccccccCCHHHHHHHHHHHcCCCceEE
Q psy15432 1087 VT---GERDPT---KLLSPLLQSNQFEYILVTPNILTNEIRWRGQPLDEDWKSTVQSINISLAIQLAYLWMFRMNKSAEL 1160 (1255)
Q Consensus 1087 ~~---~drD~~---~ll~~L~~~~~~d~vi~t~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~l 1160 (1255)
++ ++++.. .|.+.+ ....+|.+|++++++....... .. ...+..+.++..+.+.....+++++|
T Consensus 332 ~~~e~G~~~~~~~~~l~~~~-~~~~~d~vi~~g~~~~~~~~~~--------~~-~~~~~~~~~~~~~~l~~~~~~~d~VL 401 (417)
T TIGR01143 332 DMAELGEYSEELHAEVGRYA-NSLGIDLVFLVGEEAAVIYDSL--------GC-KGFHFADKDELLAFLKLELGEGDVVL 401 (417)
T ss_pred CchhcChHHHHHHHHHHHHH-HHcCCCEEEEECHHHHHHHHhc--------cc-CcEEECCHHHHHHHHHHhcCCCCEEE
Confidence 98 555432 233333 3444799999988764322111 11 12334578888888888788889999
Q ss_pred eecCCCCCCccccccc
Q psy15432 1161 KRNQSSLPMGPHFEID 1176 (1255)
Q Consensus 1161 ~~~~~~~~~~~~~~~~ 1176 (1255)
+|||+++.|+++.+.+
T Consensus 402 lkGSr~~~le~~~~~~ 417 (417)
T TIGR01143 402 VKGSRSVKLEKVVEAL 417 (417)
T ss_pred EEeCCcCcHHHHHhhC
Confidence 9999999999887653
|
This family consists of the strictly bacterial MurF gene of peptidoglycan biosynthesis. This enzyme is almost always UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanyl ligase, but in a few species, MurE adds lysine rather than diaminopimelate. This enzyme acts on the product from MurE activity, and so is also subfamily rather than equivalog. Staphylococcus aureus is an example of species in this MurF protein would differ. |
| >TIGR01085 murE UDP-N-acetylmuramyl-tripeptide synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-40 Score=400.59 Aligned_cols=358 Identities=19% Similarity=0.234 Sum_probs=258.4
Q ss_pred ccccccccccccCCCceeEeecccccCCcccccccCCCCCCCcHHH-HHHHHHhcchhHHHHHhhhcCCCcccccccchH
Q psy15432 11 ELKLNKDAHRKTLPDKTEVHHGGYKHGAVTPHASRSNKEIPQSYVD-AIKQLNTLQSNIRTIRESKLRKDPVEMQAVQVD 89 (1255)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~e-ai~~L~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 89 (1255)
.+..+..+||++.|+.+||+.+|.+.+++.|+.+...+....-..+ .+. .. ..+.+ .+.|+
T Consensus 3 ~~~~v~~dsr~v~~g~lFval~G~~~dgh~fi~~A~~~GA~~~i~~~~~~---~~-----------~~~~~----~~~v~ 64 (464)
T TIGR01085 3 EVTGLTLDSREVKPGDLFVAIKGTHVDGHDFIHDAIANGAVAVVVERDVD---FY-----------VAPVP----VIIVP 64 (464)
T ss_pred ceeEEEecCcCCCCCCEEEEecCCcCCHHHHHHHHHHCCCeEEEEccccc---cc-----------cCCce----EEEEC
Confidence 4677889999999999999999999999888766555432211110 000 00 00111 36789
Q ss_pred HHHHHHHHhcCCccCCC--CccEEEEcCCCChhHHHHHHHHHHHHCCCCeEEEcCCcccccceeEEeCCeec-Chhhhhh
Q psy15432 90 QVVQYLGHLNITLDDIK--KLNVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKLNGEPI-SYDKFTK 166 (1255)
Q Consensus 90 ~~~~~L~~Lg~~~~~~~--~l~vIhVtGTnGKgST~a~l~sIL~~~G~k~Gl~tSPhL~~~rERI~InG~~i-s~~~ft~ 166 (1255)
+++++|++|+..+++.+ ++++||||||||||||++||+++|+++|+++|+++|++ ..+++..+ ..
T Consensus 65 d~~~al~~la~~~~~~~~~~~~vI~ITGTnGKTTT~~ml~~iL~~~g~~~~~~~t~g-------~~~~~n~~ig~----- 132 (464)
T TIGR01085 65 DLRHALSSLAAAFYGHPSKKLKVIGVTGTNGKTTTTSLIAQLLRLLGKKTGLIGTIG-------YRLGGNDLIKN----- 132 (464)
T ss_pred CHHHHHHHHHHHHhCChhHccEEEEEECCCCcHhHHHHHHHHHHHcCCCEEEECccc-------eeECCeeeecC-----
Confidence 99999999998877753 78999999999999999999999999999999999998 34443322 10
Q ss_pred HHHHHHHHHHhhhhccCCcchHHHHHHHH-hhhhhhccCCCEEEEeeccC----CccccccccCCccEEEEcCCCcchhh
Q psy15432 167 YFWTVYNALHAKRKHAEDMPAYFKFLTVM-SFYVFVKEKPDAVIMEVGIG----GRYDNTNIIPNTAVVGITSLGYDHTA 241 (1255)
Q Consensus 167 ~~~~v~~~l~~~~~~~~~~p~~Fe~Lt~~-A~~~F~~~~vD~aVlEvG~G----Gr~D~tnii~~P~v~vITnIg~DHld 241 (1255)
+...+.|+.+++. ++..|.+.++|++|+|+|++ ++++. + +|+++|||||+.||++
T Consensus 133 ----------------p~~~tt~~~~~~~~~l~~~~~~~~~~~VlE~g~~~~~~~~l~~---~-~p~iaviTnI~~dHl~ 192 (464)
T TIGR01085 133 ----------------PAALTTPEALTLQSTLAEMVEAGAQYAVMEVSSHALAQGRVRG---V-RFDAAVFTNLSRDHLD 192 (464)
T ss_pred ----------------cccCCCCCHHHHHHHHHHHHHCCCCEEEEEecHHHHhhCCccC---c-eeCEEEEccCCCCCCc
Confidence 0124455666643 24456688999999999975 34444 2 6899999999999999
Q ss_pred hcCCCHHHHHHHHHcccCC---CceeeeccCCCchHHHHHHHhhhccCceEEEcCC-----c--------------ceee
Q psy15432 242 VLGNTIEEITMQKAGIMKP---NCIAVTSANQRGPCKQILLETSRALNCVLLEAPS-----I--------------LNYR 299 (1255)
Q Consensus 242 ~lG~Tle~Ia~~KagI~k~---g~~~v~~~~q~~e~~~vl~~~a~~~~~~l~~~~~-----~--------------~~~~ 299 (1255)
++| |+++|+.+|++||+. +..+|++. +++ ....+...+... ..+..... . ..+.
T Consensus 193 ~~g-s~e~i~~~K~~i~~~~~~~g~~v~n~-dd~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (464)
T TIGR01085 193 FHG-TMENYFAAKASLFTELGLKRFAVINL-DDE-YGAQFVKRLPKD-ITVSAITQPADGRAQDIKITDSGYSFEGQQFT 268 (464)
T ss_pred ccC-CHHHHHHHHHHHhccccCCCeEEEEc-CCH-HHHHHHHhcCCC-eEEEEecCCCccccccEEEEEEEEecCceEEE
Confidence 999 999999999999974 33466665 444 333343332211 11111100 0 0111
Q ss_pred ec----CcccccCCCchhHHhhHHHHHHHHHHHHHhhccchhhhhHHHHhhhhhccCCCCCCCCCCCCCCccCCCCCCCC
Q psy15432 300 WR----GQPLDEDWKSTVQSINISLAIQLAYLWMFRMNKSAELKSVIDKFLAEMRVSSPNETPGGQGHLSSCETPGGQGH 375 (1255)
Q Consensus 300 ~~----~~~i~l~l~G~~q~~Na~lAia~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (1255)
+. ...+.++++|.||++|+++|++++..+
T Consensus 269 ~~~~~~~~~~~l~l~G~hn~~NalaAia~a~~l----------------------------------------------- 301 (464)
T TIGR01085 269 FETPAGEGHLHTPLIGRFNVYNLLAALATLLHL----------------------------------------------- 301 (464)
T ss_pred EEeCCceEEEEecCccHhHHHHHHHHHHHHHHc-----------------------------------------------
Confidence 11 123678999999999999999988765
Q ss_pred ccccCCCCCCCCccccccccCCCCC-CCChHHHHHHHhcCC-CCCceEEEEe-cCcEEEEccCCCHHHHHHHHHHHHhhh
Q psy15432 376 LSFSETPGGQGHLTGNQSSLLMGPH-FEIDPKTYRGIKACV-WPGRVQVIRK-NNFKYFLDGAHTTDSIELCAKWFLRKS 452 (1255)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~l~~~~~-~~l~e~i~~gL~~~~-~pGR~e~v~~-~~~~vilDgAHnp~si~~~l~~l~~~~ 452 (1255)
+ ++ ++.|.++|++++ +|||||++.. +++.+|+||||||+||++++++++...
T Consensus 302 ------------------------g~i~-~e~i~~~L~~~~~~~gR~e~~~~~~g~~vi~Dy~~NP~s~~aal~~l~~~~ 356 (464)
T TIGR01085 302 ------------------------GGID-LEDIVAALEKFRGVPGRMELVDGGQKFLVIVDYAHTPDALEKALRTLRKHK 356 (464)
T ss_pred ------------------------CCCC-HHHHHHHHHhCCCCCCCcEEEEcCCCCEEEEECCCCHHHHHHHHHHHHhhC
Confidence 4 67 899999999999 9999999975 467899999999999999999997531
Q ss_pred hcccccCccCCCCCCCCCccCCCCCccEEEEEecCCCCC--hhhhhHHhhccCCCcEEEEcCCCCCCCC
Q psy15432 453 EAEASSSRSVSSCPLDPTQSKSSNVIQRILVFNVTGERD--PTKLLSPLLQSNQFEYILVTPNILTNES 519 (1255)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilVfg~~~drD--~~~ll~~L~~~~~~d~vi~t~~~~~~~~ 519 (1255)
. .|+++|||++++|+ +.+++..+ +...+|.++++.++++.+.
T Consensus 357 ~------------------------~r~i~VlGlg~~~~~~~~~~~~~~-~~~~~d~vi~~g~~~~~~~ 400 (464)
T TIGR01085 357 D------------------------GRLIVVFGCGGDRDRGKRPLMGAI-AEQLADLVILTSDNPRGED 400 (464)
T ss_pred C------------------------CcEEEEECCCCCCCcchhHHHHHH-HHhcCCEEEEeCCCcCCCC
Confidence 1 16899999877765 45666666 4456899999876655443
|
A close homolog, scoring just below the trusted cutoff, is found (with introns) in Arabidopsis thaliana. Its role is unknown. |
| >PRK14022 UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-40 Score=394.75 Aligned_cols=401 Identities=16% Similarity=0.113 Sum_probs=268.8
Q ss_pred ceEEEecccccccccceeeccCCCCCCCCCCcccHHHHHHHHHhcchhHHHHHHhhccCCcccccccchHHHHHHHHHhc
Q psy15432 632 YHILVTGSLHLVGAFLNVLITPHASRSNKEIPQSYVDAIKQLNTLQSNIRTIRESKLRKDPVEMQAVQVDQVVQYLGHLN 711 (1255)
Q Consensus 632 ~~vlvtGSlhLVGgvL~~l~~~ha~~~~~~~~~~y~~a~~~L~~lqsn~~~l~~~~~~g~~~~~~~~~v~~~~~~L~~Lg 711 (1255)
..=+.+.|+-+..|.|++....+ . ..+++...-.+++..--+. +....+.+...|++++.+|+.|+
T Consensus 34 i~~i~~DSR~v~~g~lFva~~~~-~------------gh~fi~~A~~~GA~~~v~~-~~~~~~~~~i~V~d~~~al~~la 99 (481)
T PRK14022 34 FDDISYDSRTADEGTLFFAKGAY-F------------KHKFLQNAITQGLKLYVSE-KDYEVGIPQVIVPDIKKAMSLIA 99 (481)
T ss_pred EEEEEecCcCCCCCCEEEEcCCC-c------------hHHHHHHHHHCCCeEEEEe-cccCCCCcEEEECCHHHHHHHHH
Confidence 44478899999999999998433 1 2233332221221100000 00000123478999999999998
Q ss_pred Cccccc--ccceEEEecCCCCCccHHHHHHHHHHHCCCCeEEEcCcccccccceeeeCCeecChhhhhhHHHHHHHHHHH
Q psy15432 712 ITLDDI--KKLNVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTKYFWTVYNALHA 789 (1255)
Q Consensus 712 ~~~~~~--~~l~vIhVTGTnGKgST~aml~sILr~~G~rtGl~tSPhL~~~~ERI~InG~pIs~~~f~~~~~~v~~~l~~ 789 (1255)
...+.. .++++||||||||||||++|+++||+..|+++++.++.. ..+++..+. ..++.
T Consensus 100 ~~~~~~p~~~~~vIgITGTnGKTTT~~~l~~iL~~~g~~~~~~g~~~-------~~ig~~~~~-~~~~~----------- 160 (481)
T PRK14022 100 MEFYDNPQHKLKLLAFTGTKGKTTAAYFAYHILKQLHKPAMLSTMNT-------TLDGETFFK-SALTT----------- 160 (481)
T ss_pred HHHhcChhhccEEEEEeCCCcHHHHHHHHHHHHHHCCCCEEEEeeee-------eccCCeeee-CCCCC-----------
Confidence 766654 678999999999999999999999999997666655432 112221111 11100
Q ss_pred HhhcCCCCCcHHHHHHHHHHHhhhcCCCCEEEEecccC----CccccccccCCCcEEEEcCCCchhhhhc-CCCHHHHHH
Q psy15432 790 KRKHAEDMPAYFKFLTVMSFYVFVKEKPDAVIMEVGIG----GRYDNTNIIPNTAVVGITSLGYDHTAVL-GNTIEEITM 864 (1255)
Q Consensus 790 ~~~~~~~~pt~Fe~lT~mAf~~F~~~~vD~aVlEVG~G----Gr~D~TNvi~~P~VavITnIg~DHl~~L-G~TleeIA~ 864 (1255)
+..+++|+++.- +.+.++|++|||+|++ +|+|. + +|+++|||||+.||+++| ++|+|+|+.
T Consensus 161 -----p~~~~l~~~~~~-----~~e~g~~~~v~EvsS~~~~~~r~~~---~-~pdiaViTNI~~DHld~L~~~t~e~~a~ 226 (481)
T PRK14022 161 -----PESLDLFKMMAE-----AVDNGMTHLIMEVSSQAYLVGRVYG---L-TFDVGVFLNITPDHIGPIEHPTFEDYFY 226 (481)
T ss_pred -----chHHHHHHHHHH-----HHHCCCCEEEEEechhHHHhccccC---c-cccEEEEcCCCcccCCCCCCCCHHHHHH
Confidence 111345555543 3788999999999975 45544 3 589999999999999995 349999999
Q ss_pred HHhccccCCceEEEccCCCChhHHHHHHHhhhcCCeEEEcCCc--c------ceecc--C---CccccCCCchhHHHHHH
Q psy15432 865 QKAGIMKPNCIAVTSANQRGPCKQILLETSRALNCVLLEAPSI--L------NYRWR--G---QPLDEDWKSTVQSINIS 931 (1255)
Q Consensus 865 ~KagI~K~g~~av~~~~qd~~~~~vl~~~A~~~~~~l~~~~~~--~------~~~~~--~---~~v~l~L~G~hq~~Na~ 931 (1255)
+|++||+++.++|++. +++.....+ ..+.. .+++.++.. . .+.+. + ..+.++++|.||++|++
T Consensus 227 aK~~i~~~~~~~Vln~-d~d~~~~~~-~~~~~--~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~hnv~Nal 302 (481)
T PRK14022 227 HKRLLMENSKAVVVNS-DMDHFSELL-EQVTP--QEHDFYGIDSENQIMASNAFSFEATGKLAGTYDIQLIGKFNQENAM 302 (481)
T ss_pred HHHHHhcCCCEEEEEc-CCCHHHHHH-HHhcC--CCEEEEecCCccceEEEEEEEEEEcccCCceEEEEEechhhHHHHH
Confidence 9999999999999987 434443332 22221 123333210 0 12121 1 23567899999999999
Q ss_pred HHHHHHHHHHHhhcchhhhhhHHHHHhhhhhcCCCCCCCCCCCCCCcCCCCCCCCCccccCCCCCCCCcccccccccCCC
Q psy15432 932 LAIQLAYLWMFRMNKSAELKSVIDKFLAEMRVSSPNETPGGQGHLSSCETPGGQGHLSFSETPGGQGHLTGNQSSLLMGP 1011 (1255)
Q Consensus 932 lAiala~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~ 1011 (1255)
+|++++..
T Consensus 303 aAia~a~~------------------------------------------------------------------------ 310 (481)
T PRK14022 303 AAGLACLR------------------------------------------------------------------------ 310 (481)
T ss_pred HHHHHHHH------------------------------------------------------------------------
Confidence 99998875
Q ss_pred CCCCC-HHHHHHHhcCCCCCcEEEEee-cCcEEEEEcCcCHHHHHHHHHHHHhhhccccCCCcccCCCCCcEEEEEecCC
Q psy15432 1012 HFEID-PKTYRGIKACVWPGRVQVIRK-NNFKYFLDGAHTTDSIELCAKWFLRKSEAEANPTQSKSSNVIQRILVFNVTG 1089 (1255)
Q Consensus 1012 ~~~i~-~~i~~gL~~~~~pGR~E~v~~-~~~~vilDgAHNP~S~~a~l~~l~~~~~~~~~~~~~~~~~~~~~vlVfg~~~ 1089 (1255)
+|++ +++.+||++..||||||++.. ++..+|+||||||+||++++++++... .+++++|||+|+
T Consensus 311 -lgi~~~~i~~~L~~~~~~gR~e~i~~~~g~~vi~DyahNP~s~~aal~~l~~~~-------------~~r~i~V~G~~~ 376 (481)
T PRK14022 311 -LGASLEDIQKGIAQTPVPGRMEVLTQSNGAKVFIDYAHNGDSLNKLIDVVEEHQ-------------KGKLILLLGAAG 376 (481)
T ss_pred -cCCCHHHHHHHhccCCCCCCeEEEECCCCCEEEEECCCCHHHHHHHHHHHhhhC-------------CCCEEEEECCCC
Confidence 4566 679999999339999999985 577899999999999999999997632 147899999999
Q ss_pred CCChhh---hhhhhhcCCCCc-EEEEcCCCCcccccccCCCCCccccc---ccccccCCHHHHHHHHHHHcC-CCceEEe
Q psy15432 1090 ERDPTK---LLSPLLQSNQFE-YILVTPNILTNEIRWRGQPLDEDWKS---TVQSINISLAIQLAYLWMFRM-NKSAELK 1161 (1255)
Q Consensus 1090 drD~~~---ll~~L~~~~~~d-~vi~t~~~~~~~~~~~~~~~~~~~~~---d~~~~~~~~~~~~~~~~~~~~-~~~~~l~ 1161 (1255)
||+..+ |.+.+ .. ..+ .+++++++++.+.+.. +...+.. ....+..+.++.++.+..... +++++|+
T Consensus 377 e~g~~~~~~~~~~~-~~-~~~~~vi~~~~~~r~e~~~~---i~~~i~~~~~~~~~~~~d~~~Ai~~a~~~a~~~gD~VLi 451 (481)
T PRK14022 377 NKGESRRPDFGRVA-NR-HPYLQVILTADDPNNEDPKM---ITQEIASHITHPVEIIDDRAEAIKHAMSITEGPGDAVII 451 (481)
T ss_pred CCCcchhHHHHHHH-Hh-cCCceEEEccCCCCCCCHHH---HHHHHHhcCCCCeEEECCHHHHHHHHHHhcCCCCCEEEE
Confidence 998776 44444 23 233 3777877765443211 1111111 012234688999999988877 8888888
Q ss_pred ecCCCCCCcccccc
Q psy15432 1162 RNQSSLPMGPHFEI 1175 (1255)
Q Consensus 1162 ~~~~~~~~~~~~~~ 1175 (1255)
+++++.++.+++.
T Consensus 452 -~G~G~~~~~~~~~ 464 (481)
T PRK14022 452 -AGKGADAYQIVPG 464 (481)
T ss_pred -EecCCcceEEECC
Confidence 9999988876644
|
|
| >TIGR02068 cya_phycin_syn cyanophycin synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-38 Score=405.32 Aligned_cols=294 Identities=19% Similarity=0.216 Sum_probs=221.5
Q ss_pred HHHHHHHhcCCccCCCCccEEEEcCCCChhHHHHHHHHHHHHCCCCeEEEcCCcccccceeEEeCCeecChhhhhhHHHH
Q psy15432 91 VVQYLGHLNITLDDIKKLNVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTKYFWT 170 (1255)
Q Consensus 91 ~~~~L~~Lg~~~~~~~~l~vIhVtGTnGKgST~a~l~sIL~~~G~k~Gl~tSPhL~~~rERI~InG~~is~~~ft~~~~~ 170 (1255)
...++..|- |...-.++++||||||||||||++|+++||+++|+++|+++|+. +.||++.+.....+.+
T Consensus 463 ~~~Il~~lf-p~~~~~~ipiI~VTGTNGKTTTt~mia~IL~~~G~~vG~~tS~G-------~~i~~~~i~~g~~t~p--- 531 (864)
T TIGR02068 463 ARAIVDMLF-PAEDDGRIPIVSVTGTNGKTTTTRLVAHILKQTGKVVGMTTTDG-------VYIGKYLVEKGDNTGP--- 531 (864)
T ss_pred HHHHHHHhc-ccCCCCceEEEEEeCCCCHhHHHHHHHHHHHHCCCcEEEecCCc-------eEECCEEEecCCCCCh---
Confidence 344555542 22222478999999999999999999999999999999999976 7899988865443322
Q ss_pred HHHHHHhhhhccCCcchHHHHHHHHhhhhhhccCCCEEEEeeccCCccccccccCCccEEEEcCCCcchhhhcC-CCHHH
Q psy15432 171 VYNALHAKRKHAEDMPAYFKFLTVMSFYVFVKEKPDAVIMEVGIGGRYDNTNIIPNTAVVGITSLGYDHTAVLG-NTIEE 249 (1255)
Q Consensus 171 v~~~l~~~~~~~~~~p~~Fe~Lt~~A~~~F~~~~vD~aVlEvG~GGr~D~tnii~~P~v~vITnIg~DHld~lG-~Tle~ 249 (1255)
.+++.+|.+.++|++|+|+|+||++|.++.+.+|+++|||||+.||++++| +|+|+
T Consensus 532 -----------------------~sa~~~l~~~~vd~aVlE~~~ggil~~gl~~~~pdvaVITNI~~DHL~~~g~~tlE~ 588 (864)
T TIGR02068 532 -----------------------ASARRILMDPTVDAAVLETARGGILREGLAFDRCDVGVVTNIAGDHLGIGDINTIED 588 (864)
T ss_pred -----------------------HHHHHHhhCCCCCEEEEEccCCchhhccCCcccccEEEEecCCHHHcCCCCCCCHHH
Confidence 234456789999999999999999999999989999999999999999887 79999
Q ss_pred HHHHHHccc---CCCceeeeccCCCchHHHHHHHhhhccCceEEEcCCcc------------eeee--------cC----
Q psy15432 250 ITMQKAGIM---KPNCIAVTSANQRGPCKQILLETSRALNCVLLEAPSIL------------NYRW--------RG---- 302 (1255)
Q Consensus 250 Ia~~KagI~---k~g~~~v~~~~q~~e~~~vl~~~a~~~~~~l~~~~~~~------------~~~~--------~~---- 302 (1255)
|+.+|++|+ +++.++|++. +++.+.+.. +.+.. ....|..+... .+.+ .+
T Consensus 589 ia~~K~~i~~~i~~~g~~VlNa-Dd~~~~~~a-~~~~~-~vi~f~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~ 665 (864)
T TIGR02068 589 LADVKRVVVEVVLPDGYAVLNA-DDPMVAAMA-EKCKG-KIAYFSMDPNNPTVAAHIADGGRAVYYENGYIVIARGGDEV 665 (864)
T ss_pred HHHHHHHHHHhhcCCCEEEEEC-CCHHHHHHH-HhCCC-CEEEEecCCCChHHHHHHHcCCcEEEEcCCEEEEEecCccc
Confidence 999999995 7888899987 555554432 22211 11222221100 0000 00
Q ss_pred -----cccccCCCc--hhHHhhHHHHHHHHHHHHHhhccchhhhhHHHHhhhhhccCCCCCCCCCCCCCCccCCCCCCCC
Q psy15432 303 -----QPLDEDWKS--TVQSINISLAIQLAYLWMFRMNKSAELKSVIDKFLAEMRVSSPNETPGGQGHLSSCETPGGQGH 375 (1255)
Q Consensus 303 -----~~i~l~l~G--~~q~~Na~lAia~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (1255)
..+.+.+.| .||++|+++|++++..+
T Consensus 666 ~~~~~~~lpl~~~G~g~~nv~NalaAiaaa~~l----------------------------------------------- 698 (864)
T TIGR02068 666 AIARIAAIPLTMGGRVAFQIENALAAVAAAWAL----------------------------------------------- 698 (864)
T ss_pred cccceeeeccccCCcccchHHHHHHHHHHHHHc-----------------------------------------------
Confidence 013333444 89999999999988664
Q ss_pred ccccCCCCCCCCccccccccCCCCCCCChHHHHHHHhcCC-----CCCceEEEEecCcEEEEccCCCHHHHHHHHHHHHh
Q psy15432 376 LSFSETPGGQGHLTGNQSSLLMGPHFEIDPKTYRGIKACV-----WPGRVQVIRKNNFKYFLDGAHTTDSIELCAKWFLR 450 (1255)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~l~~~~~~~l~e~i~~gL~~~~-----~pGR~e~v~~~~~~vilDgAHnp~si~~~l~~l~~ 450 (1255)
+++ ++.|.+||++|. ||||||++..+++.+|+||||||+|++++++.+++
T Consensus 699 ------------------------gi~-~e~I~~gL~~F~~~~~~~pGR~e~~~~~g~~vI~DyAHNP~a~~all~~l~~ 753 (864)
T TIGR02068 699 ------------------------GVP-IELIRAGIRTFDADAAQAPGRFNLFNLGGAHVLVDYGHNPAAIEAVGAAIRN 753 (864)
T ss_pred ------------------------CCC-HHHHHHHHHhccccccCCCCceEEEEeCCcEEEEEcCCCHHHHHHHHHHHHh
Confidence 567 899999999985 99999999767789999999999999999999976
Q ss_pred hhhcccccCccCCCCCCCCCccCCCCCccEEEEEecCCCCChhhh---hHHhhccCCCcEEEEcCCCCCCCC
Q psy15432 451 KSEAEASSSRSVSSCPLDPTQSKSSNVIQRILVFNVTGERDPTKL---LSPLLQSNQFEYILVTPNILTNES 519 (1255)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilVfg~~~drD~~~l---l~~L~~~~~~d~vi~t~~~~~~~~ 519 (1255)
... .++++|||+++||+...+ .+.+ ...+|.||++.+++.+..
T Consensus 754 ~~~------------------------~r~i~Vig~~gdr~~~~~~~lg~~l--~~~~d~vil~~~~~~rg~ 799 (864)
T TIGR02068 754 WPA------------------------RRRIGVIGGPGDRRDEDLVEQGELL--GGAFDQIILKEDDDVRGR 799 (864)
T ss_pred cCC------------------------CCEEEEECCCCCCChhHHHHHHHHH--HHhCCEEEEEeCCCcCCC
Confidence 421 168999999999955543 3555 456899999887654433
|
Cyanophycin synthesis is analogous to polyhydroxyalkanoic acid (PHA) biosynthesis, except that PHA polymers lack nitrogen and may be made under nitrogen-limiting conditions. |
| >PRK11929 putative bifunctional UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-39 Score=417.11 Aligned_cols=402 Identities=18% Similarity=0.167 Sum_probs=276.3
Q ss_pred ceEEEecccccccccceeeccCCCCCCCCCCcccHHHHHHHHHhcchhHHH---HHHhhccC--CcccccccchHHHHHH
Q psy15432 632 YHILVTGSLHLVGAFLNVLITPHASRSNKEIPQSYVDAIKQLNTLQSNIRT---IRESKLRK--DPVEMQAVQVDQVVQY 706 (1255)
Q Consensus 632 ~~vlvtGSlhLVGgvL~~l~~~ha~~~~~~~~~~y~~a~~~L~~lqsn~~~---l~~~~~~g--~~~~~~~~~v~~~~~~ 706 (1255)
..=+.+.|+.+..|.|++..+++.++.+ +++.....+++. .++.. .. ...+.+...|++++++
T Consensus 29 ~~~i~~DSR~v~~g~lFval~G~~~dGh-----------~fi~~A~~~GA~~~v~~~~~-~~~~~~~~~~~i~V~d~~~a 96 (958)
T PRK11929 29 TADLRLDSREVQPGDLFVACRGAASDGR-----------AFIDQALARGAAAVLVEAEG-EDQVAAADALVLPVADLRKA 96 (958)
T ss_pred cceeeeeccCCCCCCEEEEeCCCCCCHH-----------HHHHHHHHcCCEEEEEeccc-cccccCCCCeEEEECCHHHH
Confidence 3447889999999999999987754433 333322212211 01000 00 0001234779999999
Q ss_pred HHHhcCccccc--ccceEEEecCCCCCccHHHHHHHHHHHCCCCeEEEcCcccccccceeeeCCeecChhhhhhHHHHHH
Q psy15432 707 LGHLNITLDDI--KKLNVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTKYFWTVY 784 (1255)
Q Consensus 707 L~~Lg~~~~~~--~~l~vIhVTGTnGKgST~aml~sILr~~G~rtGl~tSPhL~~~~ERI~InG~pIs~~~f~~~~~~v~ 784 (1255)
|+.|+..+++. .++++||||||||||||++|+++||+++|+++|+++|.. ++| ++..+...
T Consensus 97 l~~la~~~~~~p~~~~~vI~ITGTnGKTTT~~~l~~iL~~~g~~~~~~g~~~-----~~i--~~~~i~~~---------- 159 (958)
T PRK11929 97 LGELAARWYGRPSEQLSLVAVTGTNGKTSCAQLLAQLLTRLGKPCGSIGTLG-----ARL--DGRLIPGS---------- 159 (958)
T ss_pred HHHHHHHHHhChhhccEEEEEECCCccHHHHHHHHHHHHHcCCCEEEECCcc-----ccC--CCeeeecC----------
Confidence 99886533222 468999999999999999999999999999999998853 322 44433311
Q ss_pred HHHHHHhhcCCCCCcHHHHHHHHHHHhhhcCCCCEEEEeccc----CCccccccccCCCcEEEEcCCCchhhhhcCCCHH
Q psy15432 785 NALHAKRKHAEDMPAYFKFLTVMSFYVFVKEKPDAVIMEVGI----GGRYDNTNIIPNTAVVGITSLGYDHTAVLGNTIE 860 (1255)
Q Consensus 785 ~~l~~~~~~~~~~pt~Fe~lT~mAf~~F~~~~vD~aVlEVG~----GGr~D~TNvi~~P~VavITnIg~DHl~~LG~Tle 860 (1255)
...|.++++.++ |..|.+.++|++|||||+ +|++|.+| |+++|||||+.||+++|| |+|
T Consensus 160 ----------~t~~~~~~~~~~--l~~~~~~~~~~~VlE~ss~~l~~~rl~~~~----p~iaviTnI~~dHl~~~g-t~e 222 (958)
T PRK11929 160 ----------LTTPDAIILHRI--LARMRAAGADAVAMEASSHGLEQGRLDGLR----IAVAGFTNLTRDHLDYHG-TMQ 222 (958)
T ss_pred ----------CCCCCHHHHHHH--HHHHHHCCCCEEEEEeccchHhhCcccccc----cCEEEEeCCCccccccCC-CHH
Confidence 123445555444 346778999999999985 36888754 699999999999999999 999
Q ss_pred HHHHHHhcccc---CCceEEEccCCCChhHHHHHHHhhhcCCeEEEcCCcc--------------ceecc----CCcccc
Q psy15432 861 EITMQKAGIMK---PNCIAVTSANQRGPCKQILLETSRALNCVLLEAPSIL--------------NYRWR----GQPLDE 919 (1255)
Q Consensus 861 eIA~~KagI~K---~g~~av~~~~qd~~~~~vl~~~A~~~~~~l~~~~~~~--------------~~~~~----~~~v~l 919 (1255)
+|+++|++||+ +++++|++. +++....++...+.......+...... .+.+. ...+.+
T Consensus 223 ~i~~~K~~i~~~~~~~~~~Vln~-dd~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l 301 (958)
T PRK11929 223 DYEEAKAALFSKLPGLGAAVINA-DDPAAARLLAALPRGLKVGYSPQNAGADVQARDLRATAHGQVFTLATPDGSYQLVT 301 (958)
T ss_pred HHHHHHHHHhcCCccCCeEEEEC-CCHHHHHHHHHcCCCceEEEEeeCCCccEEEEEEEEcCCceEEEEEeCCceEEEEe
Confidence 99999999997 788999988 555544444332211111111111000 01111 123678
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHhhhhhcCCCCCCCCCCCCCCcCCCCCCCCCccccCCCCCCCC
Q psy15432 920 DWKSTVQSINISLAIQLAYLWMFRMNKSAELKSVIDKFLAEMRVSSPNETPGGQGHLSSCETPGGQGHLSFSETPGGQGH 999 (1255)
Q Consensus 920 ~L~G~hq~~Na~lAiala~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 999 (1255)
+++|.||++|+++|++++..
T Consensus 302 ~l~G~hnv~NalaAia~a~~------------------------------------------------------------ 321 (958)
T PRK11929 302 RLLGRFNVSNLLLVAAALKK------------------------------------------------------------ 321 (958)
T ss_pred cCccHhhHHHHHHHHHHHHH------------------------------------------------------------
Confidence 99999999999999998875
Q ss_pred cccccccccCCCCCCCC-HHHHHHHhcCC-CCCcEEEEe----ecCcEEEEEcCcCHHHHHHHHHHHHhhhccccCCCcc
Q psy15432 1000 LTGNQSSLLMGPHFEID-PKTYRGIKACV-WPGRVQVIR----KNNFKYFLDGAHTTDSIELCAKWFLRKSEAEANPTQS 1073 (1255)
Q Consensus 1000 ~~~n~~~~~~~~~~~i~-~~i~~gL~~~~-~pGR~E~v~----~~~~~vilDgAHNP~S~~a~l~~l~~~~~~~~~~~~~ 1073 (1255)
+|++ +++.+||++++ ||||||++. .++..+|+||||||+||++++++++.... +
T Consensus 322 -------------lgi~~~~I~~~L~~~~~~~gR~e~i~~~~~~~~~~vi~DyahnP~s~~a~l~~l~~~~~---~---- 381 (958)
T PRK11929 322 -------------LGLPLAQIARALAAVSPVPGRMERVGPTAGAQGPLVVVDYAHTPDALAKALTALRPVAQ---A---- 381 (958)
T ss_pred -------------cCCCHHHHHHHHhcCCCCCCCcEEeccccCCCCCEEEEECCCCHHHHHHHHHHHHHhcc---c----
Confidence 4566 67999999998 999999994 34678999999999999999999985321 0
Q ss_pred cCCCCCcEEEEEecCCCCC--hhhhhhhhhcCCCCcEEEEcCCCCcccccccCCCCCcccccc-----cccccCCHHHHH
Q psy15432 1074 KSSNVIQRILVFNVTGERD--PTKLLSPLLQSNQFEYILVTPNILTNEIRWRGQPLDEDWKST-----VQSINISLAIQL 1146 (1255)
Q Consensus 1074 ~~~~~~~~vlVfg~~~drD--~~~ll~~L~~~~~~d~vi~t~~~~~~~~~~~~~~~~~~~~~d-----~~~~~~~~~~~~ 1146 (1255)
+.+++++|||++++|| .+.++..+ +...+|.+++++++++.+.+.. +-..+... ......+.++.+
T Consensus 382 ---~~~r~i~V~g~g~~r~~~~~~~~~~~-~~~~~d~vi~t~~~pr~e~p~~---i~~~i~~~~~~~~~~~~~~d~~~Ai 454 (958)
T PRK11929 382 ---RNGRLVCVFGCGGDRDKGKRPEMGRI-AAELADRVVVTSDNPRSEAPEA---IIDQILAGIPAGARVFVISDRAEAI 454 (958)
T ss_pred ---CCCcEEEEECCCCCCCcchhHHHHHH-HHHhCCEEEEcCCCCCCCCHHH---HHHHHHhhccCCCceEEECCHHHHH
Confidence 1146799999998877 44666666 4456899999988776544321 11111110 122345788999
Q ss_pred HHHHHHcCCCceEEeecCCCC
Q psy15432 1147 AYLWMFRMNKSAELKRNQSSL 1167 (1255)
Q Consensus 1147 ~~~~~~~~~~~~~l~~~~~~~ 1167 (1255)
..+.....+++++|+=|++.-
T Consensus 455 ~~a~~~a~~gD~VLv~GsG~e 475 (958)
T PRK11929 455 RQAIWMAAPGDVILIAGKGHE 475 (958)
T ss_pred HHHHHhcCCCCEEEEeecCcc
Confidence 889888888889998887543
|
|
| >TIGR01143 murF UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-39 Score=382.60 Aligned_cols=333 Identities=19% Similarity=0.187 Sum_probs=239.1
Q ss_pred cccccCCCceeEeecccccCCcccccccCCCCCCCcHHHHHHHHHhcchhHHHHHhhhcCCCcccccccchHHHHHHHHH
Q psy15432 18 AHRKTLPDKTEVHHGGYKHGAVTPHASRSNKEIPQSYVDAIKQLNTLQSNIRTIRESKLRKDPVEMQAVQVDQVVQYLGH 97 (1255)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~eai~~L~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~ 97 (1255)
+||++.|+.+||+++|.+.+++.|+.+...++..--.-+- .. .. ..+.+ .+.|++++++|+.
T Consensus 2 DSR~v~~g~lFval~G~~~dGh~fi~~A~~~Ga~~~i~~~-~~--~~-----------~~~~~----~i~V~d~~~al~~ 63 (417)
T TIGR01143 2 DSRAIKPGDLFIALKGERFDGHDFVEQALAAGAVAVLVDR-EV--GP-----------DNGLP----QILVDDTLEALQA 63 (417)
T ss_pred CCCccCCCcEEEEeCCCCCCHHHHHHHHHHCCCEEEEEcc-cc--cC-----------CCCCC----EEEECCHHHHHHH
Confidence 7999999999999999999999987766555432111110 00 00 00111 2678999999999
Q ss_pred hcCCccCCCCccEEEEcCCCChhHHHHHHHHHHHHCCCCeEEEcCCcccccceeEEeCCeecChhhhhhHHHHHHHHHHh
Q psy15432 98 LNITLDDIKKLNVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTKYFWTVYNALHA 177 (1255)
Q Consensus 98 Lg~~~~~~~~l~vIhVtGTnGKgST~a~l~sIL~~~G~k~Gl~tSPhL~~~rERI~InG~~is~~~ft~~~~~v~~~l~~ 177 (1255)
|+..+++.+++++|+||||||||||+.|+++||++.|+ .+.|+. ++++++ |.|.
T Consensus 64 la~~~~~~~~~~vI~VTGTnGKTTt~~ll~~iL~~~g~---~~~t~g--n~n~~i---g~p~------------------ 117 (417)
T TIGR01143 64 LASAKRAKFSGKVIGITGSSGKTTTKEMLAAILSHKYK---VFATPG--NFNNEI---GLPL------------------ 117 (417)
T ss_pred HHHHHHhhCCCCEEEEcCCCchhHHHHHHHHHHhccCc---EecCCC--cCCCcc---chhH------------------
Confidence 99998888888999999999999999999999999987 455654 333332 1111
Q ss_pred hhhccCCcchHHHHHHHHhhhhhhccCCCEEEEeeccCCccc---cccccCCccEEEEcCCCcchhhhcCCCHHHHHHHH
Q psy15432 178 KRKHAEDMPAYFKFLTVMSFYVFVKEKPDAVIMEVGIGGRYD---NTNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQK 254 (1255)
Q Consensus 178 ~~~~~~~~p~~Fe~Lt~~A~~~F~~~~vD~aVlEvG~GGr~D---~tnii~~P~v~vITnIg~DHld~lG~Tle~Ia~~K 254 (1255)
+ + .+.++++|++|||+|+.+..+ .++.+ +|+++|||||+.||+|+|| |+|+|+.+|
T Consensus 118 ---------~------~----l~~~~~~~~~VlE~g~s~~g~~~~~~~~~-~p~vaviTNi~~dHld~~g-s~e~~~~aK 176 (417)
T TIGR01143 118 ---------T------L----LRAPGDHDYAVLEMGASHPGEIAYLAEIA-KPDIAVITNIGPAHLEGFG-SLEGIAEAK 176 (417)
T ss_pred ---------H------H----hcCCCCCeEEEEEeCCCCCCcHHHHhCcc-CCCEEEEcCCcHHHhhhcC-CHHHHHHHH
Confidence 1 0 136789999999998765544 35665 7999999999999999999 999999999
Q ss_pred HcccCC---CceeeeccCCCchHHHHHHHhhhccCceEEEcCC-------------c-ceeeec--C--cccccCCCchh
Q psy15432 255 AGIMKP---NCIAVTSANQRGPCKQILLETSRALNCVLLEAPS-------------I-LNYRWR--G--QPLDEDWKSTV 313 (1255)
Q Consensus 255 agI~k~---g~~~v~~~~q~~e~~~vl~~~a~~~~~~l~~~~~-------------~-~~~~~~--~--~~i~l~l~G~~ 313 (1255)
+.||+. +..+|++. |++....+.+.+.......|.... . ..+.+. . ..+.++++|.|
T Consensus 177 ~~l~~~~~~~~~~vln~--Dd~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~G~h 254 (417)
T TIGR01143 177 GEILQGLKENGIAVINA--DDPAFAKFAKRLPNKAILSFGFEGGDFSAADISYSALGSTGFTLVAPGGEFEVSLPLLGRH 254 (417)
T ss_pred HHHHcccCCCCEEEEeC--CcHHHHHHHHhccCCcEEEECCCCCcEEEEEEEEcCCCCEEEEEEeCCceEEEEccCCcHH
Confidence 999964 56677776 444545554433211111221111 0 112111 1 14667999999
Q ss_pred HHhhHHHHHHHHHHHHHhhccchhhhhHHHHhhhhhccCCCCCCCCCCCCCCccCCCCCCCCccccCCCCCCCCcccccc
Q psy15432 314 QSINISLAIQLAYLWMFRMNKSAELKSVIDKFLAEMRVSSPNETPGGQGHLSSCETPGGQGHLSFSETPGGQGHLTGNQS 393 (1255)
Q Consensus 314 q~~Na~lAia~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (1255)
|++|+++|++++..+
T Consensus 255 n~~N~laAia~~~~l----------------------------------------------------------------- 269 (417)
T TIGR01143 255 NVMNALAAAALALEL----------------------------------------------------------------- 269 (417)
T ss_pred HHHHHHHHHHHHHHc-----------------------------------------------------------------
Confidence 999999999988765
Q ss_pred ccCCCCCCCChHHHHHHHhcCC-CCCceEEEEecCcEEEEc-cCCCHHHHHHHHHHHHhhhhcccccCccCCCCCCCCCc
Q psy15432 394 SLLMGPHFEIDPKTYRGIKACV-WPGRVQVIRKNNFKYFLD-GAHTTDSIELCAKWFLRKSEAEASSSRSVSSCPLDPTQ 471 (1255)
Q Consensus 394 ~l~~~~~~~l~e~i~~gL~~~~-~pGR~e~v~~~~~~vilD-gAHnp~si~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ 471 (1255)
|++ ++++.++|++++ +|||||+...+++.||+| |||||+|+++++++++... +
T Consensus 270 ------Gi~-~~~i~~~l~~~~~~~gR~e~~~~~~~~vidDsya~np~s~~~al~~l~~~~--~---------------- 324 (417)
T TIGR01143 270 ------GIP-LEEIAEGLAELKLVKGRFEIQTKNGLTLIDDTYNANPDSMRAALDALARFP--G---------------- 324 (417)
T ss_pred ------CCC-HHHHHHHHHhCCCCCCceeEEcCCCcEEEEcCCCCCHHHHHHHHHHHHhCC--C----------------
Confidence 667 899999999999 999999544557889999 9999999999999997542 1
Q ss_pred cCCCCCccEEEEEecC---CCCChh---hhhHHhhccCCCcEEEEcCCCC
Q psy15432 472 SKSSNVIQRILVFNVT---GERDPT---KLLSPLLQSNQFEYILVTPNIL 515 (1255)
Q Consensus 472 ~~~~~~~~~ilVfg~~---~drD~~---~ll~~L~~~~~~d~vi~t~~~~ 515 (1255)
++++|||++ |+++.. .|.+.+ ....+|.||++.+++
T Consensus 325 -------r~i~VlG~~~e~G~~~~~~~~~l~~~~-~~~~~d~vi~~g~~~ 366 (417)
T TIGR01143 325 -------KKILVLGDMAELGEYSEELHAEVGRYA-NSLGIDLVFLVGEEA 366 (417)
T ss_pred -------CEEEEEcCchhcChHHHHHHHHHHHHH-HHcCCCEEEEECHHH
Confidence 689999998 665542 233333 333469999986444
|
This family consists of the strictly bacterial MurF gene of peptidoglycan biosynthesis. This enzyme is almost always UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanyl ligase, but in a few species, MurE adds lysine rather than diaminopimelate. This enzyme acts on the product from MurE activity, and so is also subfamily rather than equivalog. Staphylococcus aureus is an example of species in this MurF protein would differ. |
| >PRK14093 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanine ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-39 Score=385.79 Aligned_cols=402 Identities=16% Similarity=0.103 Sum_probs=274.7
Q ss_pred ceEEEecccccccccceeeccCCCCCCCCCCcccHHHHHHHHHhcchhHHH---HHHhhccCCcccccccchHHHHHHHH
Q psy15432 632 YHILVTGSLHLVGAFLNVLITPHASRSNKEIPQSYVDAIKQLNTLQSNIRT---IRESKLRKDPVEMQAVQVDQVVQYLG 708 (1255)
Q Consensus 632 ~~vlvtGSlhLVGgvL~~l~~~ha~~~~~~~~~~y~~a~~~L~~lqsn~~~---l~~~~~~g~~~~~~~~~v~~~~~~L~ 708 (1255)
..=+.++|+.+..|-|++...++.++.+.-+ ++|++. ++. +++-.....+.+.+...|++++++|+
T Consensus 28 i~~i~~DSR~v~~g~lFval~G~~~DGh~fi----~~A~~~-------GA~~~v~~~~~~~~~~~~~~~i~V~d~~~al~ 96 (479)
T PRK14093 28 VTGISIDSRTLAPGDAYFAIKGDVHDGHAFV----AAALKA-------GAALAVVERAQRDKFAADAPLLVVDDVLAALR 96 (479)
T ss_pred eeEEEeecCCCCCCCEEEEeccCcCChHHHH----HHHHHc-------CCcEEEEecccccccCCCCCEEEECCHHHHHH
Confidence 3447889999999999999987765544321 333332 111 11100000000123378999999999
Q ss_pred HhcCcccccccceEEEecCCCCCccHHHHHHHHHHHCCCCeEEEcCcccccccceeeeCCeecChhhhhhHHHHHHHHHH
Q psy15432 709 HLNITLDDIKKLNVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTKYFWTVYNALH 788 (1255)
Q Consensus 709 ~Lg~~~~~~~~l~vIhVTGTnGKgST~aml~sILr~~G~rtGl~tSPhL~~~~ERI~InG~pIs~~~f~~~~~~v~~~l~ 788 (1255)
+|+...+...++++|+||||||||||++|++++|+..|.+++..+ ++|..| |.|.+ +.
T Consensus 97 ~la~~~~~~~~~~vIgVTGS~GKTTT~~ml~~iL~~~g~~~~~~g-----~~n~~i---G~p~~--------------l~ 154 (479)
T PRK14093 97 DLGRAARARLEAKVIAVTGSVGKTSTKEALRGVLGAQGETHASVA-----SFNNHW---GVPLS--------------LA 154 (479)
T ss_pred HHHHHHHHhcCCCEEEEcCCCCccHHHHHHHHHHHhcCCccCCCc-----cCCCcc---chhHH--------------HH
Confidence 998887766778999999999999999999999999997655433 334444 44431 00
Q ss_pred HHhhcCCCCCcHHHHHHHHHHHhhhcCCCCEEEEecccC--CccccccccCCCcEEEEcCCCchhhhhcCCCHHHHHHHH
Q psy15432 789 AKRKHAEDMPAYFKFLTVMSFYVFVKEKPDAVIMEVGIG--GRYDNTNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQK 866 (1255)
Q Consensus 789 ~~~~~~~~~pt~Fe~lT~mAf~~F~~~~vD~aVlEVG~G--Gr~D~TNvi~~P~VavITnIg~DHl~~LG~TleeIA~~K 866 (1255)
-...++|++|+|+|++ |+++...-.-+|+++|||||+.||+++|| |+|+|+.+|
T Consensus 155 -----------------------~~~~~~~~~V~E~g~s~~~e~~~~~~~~~PdiaViTNI~~DHLd~~g-t~e~~~~aK 210 (479)
T PRK14093 155 -----------------------RCPADARFAVFEIGMNHAGEIEPLVKMVRPHVAIITTVEPVHLEFFS-GIEAIADAK 210 (479)
T ss_pred -----------------------cCCCCCcEEEEEeCCCCCchHHHHhcccCCCEEEEcCCCHHHHhhcC-CHHHHHHHH
Confidence 0346789999999986 55544333337999999999999999999 999999999
Q ss_pred hccc---cCCceEEEccCCCChhHHHHHHHhhhcCC-eEEEcCC--cc--------------ceec--c--CCccccCCC
Q psy15432 867 AGIM---KPNCIAVTSANQRGPCKQILLETSRALNC-VLLEAPS--IL--------------NYRW--R--GQPLDEDWK 922 (1255)
Q Consensus 867 agI~---K~g~~av~~~~qd~~~~~vl~~~A~~~~~-~l~~~~~--~~--------------~~~~--~--~~~v~l~L~ 922 (1255)
..|| ++++.+|++. ++ +....+.+.+...+. .++.++. .. .+.. . ...++++++
T Consensus 211 ~~l~~~~~~~g~~VlN~-Dd-~~~~~l~~~~~~~~~~~vi~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~ 288 (479)
T PRK14093 211 AEIFTGLEPGGAAVLNR-DN-PQFDRLAASARAAGIARIVSFGADEKADARLLDVALHADCSAVHADILGHDVTYKLGMP 288 (479)
T ss_pred HHHHccCCCCCEEEEeC-Cc-HHHHHHHHHhhhccCCcEEEEeCCCCccEEEEEEEEcCCceEEEEEECCceEEEEecCC
Confidence 9999 4677888887 44 444434333322111 2222221 00 0111 1 124778999
Q ss_pred chhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHhhhhhcCCCCCCCCCCCCCCcCCCCCCCCCccccCCCCCCCCccc
Q psy15432 923 STVQSINISLAIQLAYLWMFRMNKSAELKSVIDKFLAEMRVSSPNETPGGQGHLSSCETPGGQGHLSFSETPGGQGHLTG 1002 (1255)
Q Consensus 923 G~hq~~Na~lAiala~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1002 (1255)
|.||++|+++|++++..
T Consensus 289 G~hnv~NalaAia~a~~--------------------------------------------------------------- 305 (479)
T PRK14093 289 GRHIAMNSLAVLAAAEL--------------------------------------------------------------- 305 (479)
T ss_pred CHHHHHHHHHHHHHHHH---------------------------------------------------------------
Confidence 99999999999998775
Q ss_pred ccccccCCCCCCCC-HHHHHHHhcCC-CCCcEEEEee---cCcEEEEE--cCcCHHHHHHHHHHHHhhhccccCCCcccC
Q psy15432 1003 NQSSLLMGPHFEID-PKTYRGIKACV-WPGRVQVIRK---NNFKYFLD--GAHTTDSIELCAKWFLRKSEAEANPTQSKS 1075 (1255)
Q Consensus 1003 n~~~~~~~~~~~i~-~~i~~gL~~~~-~pGR~E~v~~---~~~~vilD--gAHNP~S~~a~l~~l~~~~~~~~~~~~~~~ 1075 (1255)
+|++ +++.++|++++ .|||+|.++. ++..+++| |||||+||+++++++++....
T Consensus 306 ----------lGi~~~~i~~~l~~~~~~~gR~~~~r~~~~~~~~~iIDDsYahnP~s~~aaL~~l~~~~~~--------- 366 (479)
T PRK14093 306 ----------AGADLALAALALSQVQPAAGRGVRHTLEVGGGEATLIDESYNANPASMAAALGVLGRAPVG--------- 366 (479)
T ss_pred ----------cCCCHHHHHHHHHhCCCcCCcceEEEeecCCCCEEEEECCCCCCHHHHHHHHHHHHhhhcc---------
Confidence 5676 77999999999 9999998753 33345565 999999999999999875210
Q ss_pred CCCCcEEEEEecCCCC--Chhhhhhhhh---cCCCCcEEEEcCCCCcccccccCCCCCcccc-cccccccCCHHHHHHHH
Q psy15432 1076 SNVIQRILVFNVTGER--DPTKLLSPLL---QSNQFEYILVTPNILTNEIRWRGQPLDEDWK-STVQSINISLAIQLAYL 1149 (1255)
Q Consensus 1076 ~~~~~~vlVfg~~~dr--D~~~ll~~L~---~~~~~d~vi~t~~~~~~~~~~~~~~~~~~~~-~d~~~~~~~~~~~~~~~ 1149 (1255)
.++++++|||.|.+. ...++++.+. ....+|.|++++......... .. +....+..+.++..+.+
T Consensus 367 -~~~r~i~V~G~m~elg~~~~~~h~~~~~~~~~~~~d~v~~~G~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~l 437 (479)
T PRK14093 367 -PQGRRIAVLGDMLELGPRGPELHRGLAEAIRANAIDLVFCCGPLMRNLWDA--------LSSGKRGGYAEDAAALESQV 437 (479)
T ss_pred -CCCCEEEEECChHHcCcHHHHHHHHHHHHHHHcCCCEEEEEchhHHHHHHh--------hcccccceeeCCHHHHHHHH
Confidence 125789999987442 2333344443 345689999997532211110 11 10112445778878888
Q ss_pred HHHcCCCceEEeecCCCCCCcccccccccccccc
Q psy15432 1150 WMFRMNKSAELKRNQSSLPMGPHFEIDPKTYRGI 1183 (1255)
Q Consensus 1150 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~ 1183 (1255)
...+.+.+++|+||||++.||.+++.+.+.+.|.
T Consensus 438 ~~~~~~gd~vL~kGSr~~~le~i~~~l~~~~~~~ 471 (479)
T PRK14093 438 VAAIRAGDVIMVKGSLGSRMKTIVTALEKRFPGN 471 (479)
T ss_pred HHhcCCCCEEEEEcCCcCCHHHHHHHHHhhCCCc
Confidence 8888899999999999999999999998777665
|
|
| >TIGR01085 murE UDP-N-acetylmuramyl-tripeptide synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-38 Score=378.76 Aligned_cols=400 Identities=18% Similarity=0.180 Sum_probs=273.1
Q ss_pred EEecccccccccceeeccCCCCCCCCCCcccHHHHHHHHHhcchhHHHHHHhhccCC--cccccccchHHHHHHHHHhcC
Q psy15432 635 LVTGSLHLVGAFLNVLITPHASRSNKEIPQSYVDAIKQLNTLQSNIRTIRESKLRKD--PVEMQAVQVDQVVQYLGHLNI 712 (1255)
Q Consensus 635 lvtGSlhLVGgvL~~l~~~ha~~~~~~~~~~y~~a~~~L~~lqsn~~~l~~~~~~g~--~~~~~~~~v~~~~~~L~~Lg~ 712 (1255)
+.+.|+.+-.|.|++..++...+.+ +++.....+.+..--..+... ....+...|+++.++|++|+.
T Consensus 7 v~~dsr~v~~g~lFval~G~~~dgh-----------~fi~~A~~~GA~~~i~~~~~~~~~~~~~~~~v~d~~~al~~la~ 75 (464)
T TIGR01085 7 LTLDSREVKPGDLFVAIKGTHVDGH-----------DFIHDAIANGAVAVVVERDVDFYVAPVPVIIVPDLRHALSSLAA 75 (464)
T ss_pred EEecCcCCCCCCEEEEecCCcCCHH-----------HHHHHHHHCCCeEEEEccccccccCCceEEEECCHHHHHHHHHH
Confidence 5679999999999999886543332 333322111111000000000 001234889999999999987
Q ss_pred ccccc--ccceEEEecCCCCCccHHHHHHHHHHHCCCCeEEEcCcccccccceeeeCCeec-ChhhhhhHHHHHHHHHHH
Q psy15432 713 TLDDI--KKLNVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKLNGEPI-SYDKFTKYFWTVYNALHA 789 (1255)
Q Consensus 713 ~~~~~--~~l~vIhVTGTnGKgST~aml~sILr~~G~rtGl~tSPhL~~~~ERI~InG~pI-s~~~f~~~~~~v~~~l~~ 789 (1255)
.+++. .++++||||||||||||++||+++|+.+|+++++++|++. .+++..+ .
T Consensus 76 ~~~~~~~~~~~vI~ITGTnGKTTT~~ml~~iL~~~g~~~~~~~t~g~-------~~~~n~~ig----------------- 131 (464)
T TIGR01085 76 AFYGHPSKKLKVIGVTGTNGKTTTTSLIAQLLRLLGKKTGLIGTIGY-------RLGGNDLIK----------------- 131 (464)
T ss_pred HHhCChhHccEEEEEECCCCcHhHHHHHHHHHHHcCCCEEEECccce-------eECCeeeec-----------------
Confidence 77654 4789999999999999999999999999999999999983 2332211 0
Q ss_pred HhhcCCCCCcHHHHHHHHH-HHhhhcCCCCEEEEecccC-CccccccccCCCcEEEEcCCCchhhhhcCCCHHHHHHHHh
Q psy15432 790 KRKHAEDMPAYFKFLTVMS-FYVFVKEKPDAVIMEVGIG-GRYDNTNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKA 867 (1255)
Q Consensus 790 ~~~~~~~~pt~Fe~lT~mA-f~~F~~~~vD~aVlEVG~G-Gr~D~TNvi~~P~VavITnIg~DHl~~LG~TleeIA~~Ka 867 (1255)
.+...+.|+.+|+.+ +..|.+.++|++|+|+|.+ |++.....+ +|+++|||||+.||++++| |+|+|+.+|+
T Consensus 132 ----~p~~~tt~~~~~~~~~l~~~~~~~~~~~VlE~g~~~~~~~~l~~~-~p~iaviTnI~~dHl~~~g-s~e~i~~~K~ 205 (464)
T TIGR01085 132 ----NPAALTTPEALTLQSTLAEMVEAGAQYAVMEVSSHALAQGRVRGV-RFDAAVFTNLSRDHLDFHG-TMENYFAAKA 205 (464)
T ss_pred ----CcccCCCCCHHHHHHHHHHHHHCCCCEEEEEecHHHHhhCCccCc-eeCEEEEccCCCCCCcccC-CHHHHHHHHH
Confidence 011256777777644 4556688999999999964 333333333 6999999999999999999 9999999999
Q ss_pred ccccC---CceEEEccCCCChhHHHHHHHhhhcCCeEEEcCC-----c--------------cceec----cCCccccCC
Q psy15432 868 GIMKP---NCIAVTSANQRGPCKQILLETSRALNCVLLEAPS-----I--------------LNYRW----RGQPLDEDW 921 (1255)
Q Consensus 868 gI~K~---g~~av~~~~qd~~~~~vl~~~A~~~~~~l~~~~~-----~--------------~~~~~----~~~~v~l~L 921 (1255)
+||+. ++.+|++. |++....+...+... ..+..... . ..+.+ +...+.+++
T Consensus 206 ~i~~~~~~~g~~v~n~--dd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l 282 (464)
T TIGR01085 206 SLFTELGLKRFAVINL--DDEYGAQFVKRLPKD-ITVSAITQPADGRAQDIKITDSGYSFEGQQFTFETPAGEGHLHTPL 282 (464)
T ss_pred HHhccccCCCeEEEEc--CCHHHHHHHHhcCCC-eEEEEecCCCccccccEEEEEEEEecCceEEEEEeCCceEEEEecC
Confidence 99973 45688887 444433343332210 11111000 0 01111 112367889
Q ss_pred CchhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHhhhhhcCCCCCCCCCCCCCCcCCCCCCCCCccccCCCCCCCCcc
Q psy15432 922 KSTVQSINISLAIQLAYLWMFRMNKSAELKSVIDKFLAEMRVSSPNETPGGQGHLSSCETPGGQGHLSFSETPGGQGHLT 1001 (1255)
Q Consensus 922 ~G~hq~~Na~lAiala~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1001 (1255)
+|.||++|+++|++++..
T Consensus 283 ~G~hn~~NalaAia~a~~-------------------------------------------------------------- 300 (464)
T TIGR01085 283 IGRFNVYNLLAALATLLH-------------------------------------------------------------- 300 (464)
T ss_pred ccHhHHHHHHHHHHHHHH--------------------------------------------------------------
Confidence 999999999999998876
Q ss_pred cccccccCCCCCC-CC-HHHHHHHhcCC-CCCcEEEEee-cCcEEEEEcCcCHHHHHHHHHHHHhhhccccCCCcccCCC
Q psy15432 1002 GNQSSLLMGPHFE-ID-PKTYRGIKACV-WPGRVQVIRK-NNFKYFLDGAHTTDSIELCAKWFLRKSEAEANPTQSKSSN 1077 (1255)
Q Consensus 1002 ~n~~~~~~~~~~~-i~-~~i~~gL~~~~-~pGR~E~v~~-~~~~vilDgAHNP~S~~a~l~~l~~~~~~~~~~~~~~~~~ 1077 (1255)
++ ++ +.+.++|++++ +|||||++.. ++..+|+||||||+||++++++++...
T Consensus 301 -----------lg~i~~e~i~~~L~~~~~~~gR~e~~~~~~g~~vi~Dy~~NP~s~~aal~~l~~~~------------- 356 (464)
T TIGR01085 301 -----------LGGIDLEDIVAALEKFRGVPGRMELVDGGQKFLVIVDYAHTPDALEKALRTLRKHK------------- 356 (464)
T ss_pred -----------cCCCCHHHHHHHHHhCCCCCCCcEEEEcCCCCEEEEECCCCHHHHHHHHHHHHhhC-------------
Confidence 34 66 67999999999 9999999975 467899999999999999999997532
Q ss_pred CCcEEEEEecCCCCCh--hhhhhhhhcCCCCcEEEEcCCCCcccccccCCCCCccccc----ccccccCCHHHHHHHHHH
Q psy15432 1078 VIQRILVFNVTGERDP--TKLLSPLLQSNQFEYILVTPNILTNEIRWRGQPLDEDWKS----TVQSINISLAIQLAYLWM 1151 (1255)
Q Consensus 1078 ~~~~vlVfg~~~drD~--~~ll~~L~~~~~~d~vi~t~~~~~~~~~~~~~~~~~~~~~----d~~~~~~~~~~~~~~~~~ 1151 (1255)
.+++++|||+..+|+. ..++..+ ....+|.++++++.+..+..... ..+.+++ ....+..+.++.++.+..
T Consensus 357 ~~r~i~VlGlg~~~~~~~~~~~~~~-~~~~~d~vi~~g~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 433 (464)
T TIGR01085 357 DGRLIVVFGCGGDRDRGKRPLMGAI-AEQLADLVILTSDNPRGEDPEQI--IADILAGISEKEKVVIIADRRQAIRYAIS 433 (464)
T ss_pred CCcEEEEECCCCCCCcchhHHHHHH-HHhcCCEEEEeCCCcCCCCHHHH--HHHHHhcccCCCcEEEECCHHHHHHHHHH
Confidence 1468999998777654 4666666 45567999998876543211100 0001111 011234689999999988
Q ss_pred HcCCCceEEeecCCCC
Q psy15432 1152 FRMNKSAELKRNQSSL 1167 (1255)
Q Consensus 1152 ~~~~~~~~l~~~~~~~ 1167 (1255)
...+++++|++|-++-
T Consensus 434 ~~~~~d~VLv~G~g~~ 449 (464)
T TIGR01085 434 NAKAGDVVLIAGKGHE 449 (464)
T ss_pred hcCCCCEEEEEEcCCc
Confidence 8889999999998764
|
A close homolog, scoring just below the trusted cutoff, is found (with introns) in Arabidopsis thaliana. Its role is unknown. |
| >PRK10773 murF UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-38 Score=377.81 Aligned_cols=388 Identities=15% Similarity=0.116 Sum_probs=270.9
Q ss_pred ceEEEecccccccccceeeccCCCCCCCCCCcccHHHHHHHHHhcchhHHHHHHhhccCCcccccccchHHHHHHHHHhc
Q psy15432 632 YHILVTGSLHLVGAFLNVLITPHASRSNKEIPQSYVDAIKQLNTLQSNIRTIRESKLRKDPVEMQAVQVDQVVQYLGHLN 711 (1255)
Q Consensus 632 ~~vlvtGSlhLVGgvL~~l~~~ha~~~~~~~~~~y~~a~~~L~~lqsn~~~l~~~~~~g~~~~~~~~~v~~~~~~L~~Lg 711 (1255)
..=+.++|+.+..|.|++..++..++.+.-+ ++|++ ..+..- +..+..+.+.+...|++++.+|..|+
T Consensus 24 i~~v~~DSR~v~~g~lFval~G~~~dGh~fi----~~A~~-------~Ga~~v-v~~~~~~~~~p~i~v~d~~~al~~la 91 (453)
T PRK10773 24 IDAVTTDTRKVTPGCLFVALKGERFDAHDFA----DDAKA-------AGAGAL-LVSRPLDIDLPQLVVKDTRLAFGQLA 91 (453)
T ss_pred eeEEEeeCCCCCCCcEEEEecCCCCCHHHHH----HHHHH-------CCCeEE-EEecCcCCCCCEEEECCHHHHHHHHH
Confidence 3447889999999999999987654433211 22222 111000 00011000123478889999999998
Q ss_pred CcccccccceEEEecCCCCCccHHHHHHHHHHHCCCCeEEEcCcccccccceeeeCCeecChhhhhhHHHHHHHHHHHHh
Q psy15432 712 ITLDDIKKLNVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTKYFWTVYNALHAKR 791 (1255)
Q Consensus 712 ~~~~~~~~l~vIhVTGTnGKgST~aml~sILr~~G~rtGl~tSPhL~~~~ERI~InG~pIs~~~f~~~~~~v~~~l~~~~ 791 (1255)
...++....++|+||||||||||++|+++||+..|.. +.++. ++|..+ |.|.+...
T Consensus 92 ~~~~~~~~~~vI~VTGSnGKTTT~~ml~~iL~~~g~~---~~t~g--n~n~~~---G~~~~~~~---------------- 147 (453)
T PRK10773 92 AWVRQQVPARVVALTGSSGKTSVKEMTAAILRQCGNT---LYTAG--NLNNDI---GVPLTLLR---------------- 147 (453)
T ss_pred HHHHhcCCCCEEEEcCCCchHHHHHHHHHHHHhcCcc---cccCc--cccCCc---ccccHHhc----------------
Confidence 7776555678999999999999999999999999875 34443 444444 55533110
Q ss_pred hcCCCCCcHHHHHHHHHHHhhhcCCCCEEEEecccC--CccccccccCCCcEEEEcCCCchhhhhcCCCHHHHHHHHhcc
Q psy15432 792 KHAEDMPAYFKFLTVMSFYVFVKEKPDAVIMEVGIG--GRYDNTNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKAGI 869 (1255)
Q Consensus 792 ~~~~~~pt~Fe~lT~mAf~~F~~~~vD~aVlEVG~G--Gr~D~TNvi~~P~VavITnIg~DHl~~LG~TleeIA~~KagI 869 (1255)
...++|++|+|+|+. |+++.+--+-+|+++|||||+.||+++|| |+|+|+.+|+.|
T Consensus 148 ---------------------~~~~~~~~V~E~g~~~~gei~~~~~~~~p~iaViTNI~~dHld~~g-s~e~~~~aK~~l 205 (453)
T PRK10773 148 ---------------------LTPEHDYAVIELGANHQGEIAYTVSLTRPEAALVNNLAAAHLEGFG-SLAGVAKAKGEI 205 (453)
T ss_pred ---------------------CCCCCcEEEEEcCCCCcchhHHhcCccCCCEEEEeCCCHHHHhhcC-CHHHHHHHHHHH
Confidence 345689999999986 78775444447999999999999999999 999999999999
Q ss_pred cc---CCceEEEccCCCChhHHHHHHHhhhcCCeEEEcCC------------------ccceec----cCCccccCCCch
Q psy15432 870 MK---PNCIAVTSANQRGPCKQILLETSRALNCVLLEAPS------------------ILNYRW----RGQPLDEDWKST 924 (1255)
Q Consensus 870 ~K---~g~~av~~~~qd~~~~~vl~~~A~~~~~~l~~~~~------------------~~~~~~----~~~~v~l~L~G~ 924 (1255)
|+ +++.+|++. + ++....+.+.... ..++.++. ...+.+ ....+.++++|.
T Consensus 206 ~~~~~~~g~~vln~-D-d~~~~~~~~~~~~--~~~~~~g~~~~~~~d~~~~~i~~~~~~~~f~~~~~~~~~~~~l~l~G~ 281 (453)
T PRK10773 206 FSGLPENGIAIMNA-D-SNDWLNWQSVIGS--KTVWRFSPNAANSVDFTATNIHVTSHGTEFTLHTPTGSVDVLLPLPGR 281 (453)
T ss_pred HcccCCCCEEEEEC-C-cHhHHHHHHHhcC--CcEEEEeCCCCCcCcEEEEEEEEeCCeeEEEEEecCceEEEEecCCcH
Confidence 95 567888887 3 3333333332221 11222210 001111 112467899999
Q ss_pred hHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHhhhhhcCCCCCCCCCCCCCCcCCCCCCCCCccccCCCCCCCCccccc
Q psy15432 925 VQSINISLAIQLAYLWMFRMNKSAELKSVIDKFLAEMRVSSPNETPGGQGHLSSCETPGGQGHLSFSETPGGQGHLTGNQ 1004 (1255)
Q Consensus 925 hq~~Na~lAiala~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ 1004 (1255)
||++|+++|++++..
T Consensus 282 hnv~NalaAia~a~~----------------------------------------------------------------- 296 (453)
T PRK10773 282 HNIANALAAAALAMS----------------------------------------------------------------- 296 (453)
T ss_pred hHHHHHHHHHHHHHH-----------------------------------------------------------------
Confidence 999999999998875
Q ss_pred ccccCCCCCCCC-HHHHHHHhcCC-CCCcEEEEee-cCcEEEEE-cCcCHHHHHHHHHHHHhhhccccCCCcccCCCCCc
Q psy15432 1005 SSLLMGPHFEID-PKTYRGIKACV-WPGRVQVIRK-NNFKYFLD-GAHTTDSIELCAKWFLRKSEAEANPTQSKSSNVIQ 1080 (1255)
Q Consensus 1005 ~~~~~~~~~~i~-~~i~~gL~~~~-~pGR~E~v~~-~~~~vilD-gAHNP~S~~a~l~~l~~~~~~~~~~~~~~~~~~~~ 1080 (1255)
+|++ +++.+||++++ +|||||++.. ++.++|.| |||||+||+++++.+++.. ++
T Consensus 297 --------lGi~~~~i~~~L~~~~~~~gR~e~v~~~~g~~iIDDsYn~nP~s~~aaL~~l~~~~--------------~r 354 (453)
T PRK10773 297 --------VGATLDAVKAGLANLKAVPGRLFPIQLAEGQLLLDDSYNANVGSMTAAAQVLAEMP--------------GY 354 (453)
T ss_pred --------cCCCHHHHHHHHHhCCCCCCceeEEECCCCeEEEEcCCCCCHHHHHHHHHHHHhCC--------------CC
Confidence 4666 67999999999 9999999875 45555556 9999999999999998642 35
Q ss_pred EEEEEecCCC--CChhhhhhhhh---cCCCCcEEEEcCCCCcccccccCCCCCcccccccccccCCHHHHHHHHHHHcCC
Q psy15432 1081 RILVFNVTGE--RDPTKLLSPLL---QSNQFEYILVTPNILTNEIRWRGQPLDEDWKSTVQSINISLAIQLAYLWMFRMN 1155 (1255)
Q Consensus 1081 ~vlVfg~~~d--rD~~~ll~~L~---~~~~~d~vi~t~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~ 1155 (1255)
+++|||.|.+ .....+++.+. ....+|.+++++.......... + ...++.+.++..+.+...+.+
T Consensus 355 ~i~VlG~m~elG~~~~~~h~~~~~~~~~~~~d~v~~~G~~~~~~~~~~---------~-~~~~~~~~~~~~~~l~~~~~~ 424 (453)
T PRK10773 355 RVMVVGDMAELGAESEACHRQVGEAAKAAGIDKVLSVGKLSHAISEAS---------G-VGEHFADKTALIARLKALLAE 424 (453)
T ss_pred EEEEECChhhcchHHHHHHHHHHHHHHHcCCCEEEEEChhHHHHHHhc---------C-CCeeECCHHHHHHHHHHhhcC
Confidence 7999998877 34555555554 3456899998875432211110 1 113457889988989888889
Q ss_pred Cc--eEEeecCCCCCCccccccccc
Q psy15432 1156 KS--AELKRNQSSLPMGPHFEIDPK 1178 (1255)
Q Consensus 1156 ~~--~~l~~~~~~~~~~~~~~~~~~ 1178 (1255)
.+ ++|+||||++.|+++.+.+.+
T Consensus 425 gd~~~vL~Kgsr~~~le~i~~~l~~ 449 (453)
T PRK10773 425 HQVITILVKGSRSAAMEEVVRALQE 449 (453)
T ss_pred CCceEEEEEeCCcCCHHHHHHHHHH
Confidence 88 699999999999999988754
|
|
| >COG0770 MurF UDP-N-acetylmuramyl pentapeptide synthase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-37 Score=368.49 Aligned_cols=391 Identities=17% Similarity=0.160 Sum_probs=297.2
Q ss_pred CceEEEecccccccccceeeccCCCCCCCCCCcccHHHHHHHHHhcchhHHHHHHhhccCCc-cccc--ccchHHHHHHH
Q psy15432 631 EYHILVTGSLHLVGAFLNVLITPHASRSNKEIPQSYVDAIKQLNTLQSNIRTIRESKLRKDP-VEMQ--AVQVDQVVQYL 707 (1255)
Q Consensus 631 ~~~vlvtGSlhLVGgvL~~l~~~ha~~~~~~~~~~y~~a~~~L~~lqsn~~~l~~~~~~g~~-~~~~--~~~v~~~~~~L 707 (1255)
...-+.+.|+-+..|.+++...+..+..|.-. ++|++. .+...-+ .+... ...+ ...|.++.++|
T Consensus 23 ~~~~v~~Dsr~v~~g~lF~al~G~~~Dgh~fi----~~A~~~-------GA~a~~v-~r~~~~~~~~~~~~~V~d~~~al 90 (451)
T COG0770 23 VVSGVSIDSRKVKPGDLFVALKGERFDGHDFI----EQALAA-------GAAAVLV-ARPVLPPAIPLVVLLVLDTLEAL 90 (451)
T ss_pred ceeeEEeecccCCCCceeEEccCccccccchH----HHHHhc-------CCEEEEE-ecCcCCcccccceEEeHHHHHHH
Confidence 35678899999999999999998766655322 333321 1100001 11110 0011 25789999999
Q ss_pred HHhcCcccccccceEEEecCCCCCccHHHHHHHHHHHCCCCeEEEcCcccccccceeeeCCeecChhhhhhHHHHHHHHH
Q psy15432 708 GHLNITLDDIKKLNVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTKYFWTVYNAL 787 (1255)
Q Consensus 708 ~~Lg~~~~~~~~l~vIhVTGTnGKgST~aml~sILr~~G~rtGl~tSPhL~~~~ERI~InG~pIs~~~f~~~~~~v~~~l 787 (1255)
++|+...++..+.++|+|||++|||||+.|+++||+..| -+|.||+ ++|+.| |.|++-..
T Consensus 91 ~~la~~~~~~~~~kvIaITGS~GKTTTKe~la~iL~~~~---~v~~t~g--n~Nn~i---GlPltll~------------ 150 (451)
T COG0770 91 GKLAKAYRQKFNAKVIAITGSNGKTTTKEMLAAILSTKG---KVHATPG--NFNNEI---GLPLTLLR------------ 150 (451)
T ss_pred HHHHHHHHHhcCCcEEEEeCCCCcHHHHHHHHHHHhhcC---eEecCCC--ccCccc---cchhHHHh------------
Confidence 999998888888999999999999999999999999965 4788998 999999 98866322
Q ss_pred HHHhhcCCCCCcHHHHHHHHHHHhhhcCCCCEEEEecccC--CccccccccCCCcEEEEcCCCchhhhhcCCCHHHHHHH
Q psy15432 788 HAKRKHAEDMPAYFKFLTVMSFYVFVKEKPDAVIMEVGIG--GRYDNTNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQ 865 (1255)
Q Consensus 788 ~~~~~~~~~~pt~Fe~lT~mAf~~F~~~~vD~aVlEVG~G--Gr~D~TNvi~~P~VavITnIg~DHl~~LG~TleeIA~~ 865 (1255)
+....|++|+|+|+. |+++.+.-+.+|++++||||+.+|++++| |.|.||++
T Consensus 151 -------------------------~~~~~e~~VlEmG~~~~GeI~~l~~i~~P~iavItnIg~aHle~fg-s~e~Ia~a 204 (451)
T COG0770 151 -------------------------LPADTEYAVLEMGMNHPGEIAELSEIARPDIAVITNIGEAHLEGFG-SREGIAEA 204 (451)
T ss_pred -------------------------CCCcccEEEEEcCCCCCCcHHHHhcccCCCEEEEcChhHHHHHhcC-CHHHHHHH
Confidence 455699999999999 99999888889999999999999999999 79999999
Q ss_pred Hhcccc---CCceEEEccCCCChhHHHHHHHhhhcCCeEEEcCCc--c--------------ceec--cCC--ccccCCC
Q psy15432 866 KAGIMK---PNCIAVTSANQRGPCKQILLETSRALNCVLLEAPSI--L--------------NYRW--RGQ--PLDEDWK 922 (1255)
Q Consensus 866 KagI~K---~g~~av~~~~qd~~~~~vl~~~A~~~~~~l~~~~~~--~--------------~~~~--~~~--~v~l~L~ 922 (1255)
|+.|+. +++.+|++. |++....+.... -..+++.++.. . .+.. .+. .+.++++
T Consensus 205 K~Ei~~~~~~~g~ai~n~--d~~~~~~~~~~~--~~~~v~~fg~~~~~d~~~~~i~~~~~~~~f~~~~~~~~~~~~l~~~ 280 (451)
T COG0770 205 KAEILAGLRPEGIAILNA--DNPLLKNWAAKI--GNAKVLSFGLNNGGDFRATNIHLDEEGSSFTLDIEGGEAEFELPLP 280 (451)
T ss_pred HHHHHhccCCCcEEEEEC--ccHHHHHHHhhc--CCCcEEEEcCCCCCceeeEEEEEcCCceEEEEEecCceEEEEecCC
Confidence 999994 677788886 555533333321 13445555421 0 1111 111 4889999
Q ss_pred chhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHhhhhhcCCCCCCCCCCCCCCcCCCCCCCCCccccCCCCCCCCccc
Q psy15432 923 STVQSINISLAIQLAYLWMFRMNKSAELKSVIDKFLAEMRVSSPNETPGGQGHLSSCETPGGQGHLSFSETPGGQGHLTG 1002 (1255)
Q Consensus 923 G~hq~~Na~lAiala~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1002 (1255)
|+||+.|+++|++++..
T Consensus 281 G~hn~~NalaA~a~a~~--------------------------------------------------------------- 297 (451)
T COG0770 281 GRHNVTNALAAAALALE--------------------------------------------------------------- 297 (451)
T ss_pred cHhHHHHHHHHHHHHHH---------------------------------------------------------------
Confidence 99999999999999886
Q ss_pred ccccccCCCCCCCC-HHHHHHHhcCC-CCCcEEEE-eecCcEEEEE-cCcCHHHHHHHHHHHHhhhccccCCCcccCCCC
Q psy15432 1003 NQSSLLMGPHFEID-PKTYRGIKACV-WPGRVQVI-RKNNFKYFLD-GAHTTDSIELCAKWFLRKSEAEANPTQSKSSNV 1078 (1255)
Q Consensus 1003 n~~~~~~~~~~~i~-~~i~~gL~~~~-~pGR~E~v-~~~~~~vilD-gAHNP~S~~a~l~~l~~~~~~~~~~~~~~~~~~ 1078 (1255)
+|++ ++|++||+.+. .+||+|++ ..++.++|.| |+.||+||.++++.+.....
T Consensus 298 ----------lG~~~e~i~~~L~~~~~~~gR~~~~~~~~g~~iIdD~YNAnp~sm~aai~~l~~~~~------------- 354 (451)
T COG0770 298 ----------LGLDLEEIAAGLKELKPVKGRLEVILLANGKTLIDDSYNANPDSMRAALDLLAALPG------------- 354 (451)
T ss_pred ----------cCCCHHHHHHHHHhcCCCCccceeEecCCCcEEEEcCCCCCHHHHHHHHHHHhhCcc-------------
Confidence 5677 78999999999 99999944 4456677777 89999999999999987642
Q ss_pred CcEEEEEecCCC--CChhhhhhhhh---cCCCCcEEEEcCCCCcccccccCCCCCcccccccccccCCHHHHHHHHHHHc
Q psy15432 1079 IQRILVFNVTGE--RDPTKLLSPLL---QSNQFEYILVTPNILTNEIRWRGQPLDEDWKSTVQSINISLAIQLAYLWMFR 1153 (1255)
Q Consensus 1079 ~~~vlVfg~~~d--rD~~~ll~~L~---~~~~~d~vi~t~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~ 1153 (1255)
.+.++|+|.|.+ .+..++++.+. ....+|.+++.++..+...... .....++.+.++.++.++..+
T Consensus 355 ~~~i~VlGdM~ELG~~s~~~H~~v~~~~~~~~~d~v~~~G~~~~~i~~~~---------~~~~~~f~~~~~l~~~l~~~l 425 (451)
T COG0770 355 RKGIAVLGDMLELGEESEELHEEVGEYAVEAGIDLVFLVGELSKAIAEAL---------GNKGIYFADKEELITSLKALL 425 (451)
T ss_pred CCcEEEeCChhhhCccHHHHHHHHHHHHHhcCceEEEEEccchHHHHHhc---------CCCeEecCCHHHHHHHHHHhc
Confidence 223899999887 44556666554 4556899999998655444332 111667788999999999999
Q ss_pred CCCceEEeecCCCCCCccccccccc
Q psy15432 1154 MNKSAELKRNQSSLPMGPHFEIDPK 1178 (1255)
Q Consensus 1154 ~~~~~~l~~~~~~~~~~~~~~~~~~ 1178 (1255)
...+++|+|||+++.|+++++++..
T Consensus 426 ~~gd~vLvKgSr~~~le~vv~~l~~ 450 (451)
T COG0770 426 RKGDVVLVKGSRGMKLEKVVDALLG 450 (451)
T ss_pred CCCCEEEEEcCccccHHHHHHHHhc
Confidence 9999999999999999999998764
|
|
| >TIGR02068 cya_phycin_syn cyanophycin synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-36 Score=384.69 Aligned_cols=318 Identities=18% Similarity=0.183 Sum_probs=233.8
Q ss_pred ccceEEEecCCCCCccHHHHHHHHHHHCCCCeEEEcCcccccccceeeeCCeecChhhhhhHHHHHHHHHHHHhhcCCCC
Q psy15432 718 KKLNVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTKYFWTVYNALHAKRKHAEDM 797 (1255)
Q Consensus 718 ~~l~vIhVTGTnGKgST~aml~sILr~~G~rtGl~tSPhL~~~~ERI~InG~pIs~~~f~~~~~~v~~~l~~~~~~~~~~ 797 (1255)
.++|+||||||||||||++|+++||+.+|+++|+++|++ +.||+..+.....+.
T Consensus 477 ~~ipiI~VTGTNGKTTTt~mia~IL~~~G~~vG~~tS~G-------~~i~~~~i~~g~~t~------------------- 530 (864)
T TIGR02068 477 GRIPIVSVTGTNGKTTTTRLVAHILKQTGKVVGMTTTDG-------VYIGKYLVEKGDNTG------------------- 530 (864)
T ss_pred CceEEEEEeCCCCHhHHHHHHHHHHHHCCCcEEEecCCc-------eEECCEEEecCCCCC-------------------
Confidence 578999999999999999999999999999999999975 778888775433211
Q ss_pred CcHHHHHHHHHHHhhhcCCCCEEEEecccCCccccccccCCCcEEEEcCCCchhhhhcC-CCHHHHHHHHhccc---cCC
Q psy15432 798 PAYFKFLTVMSFYVFVKEKPDAVIMEVGIGGRYDNTNIIPNTAVVGITSLGYDHTAVLG-NTIEEITMQKAGIM---KPN 873 (1255)
Q Consensus 798 pt~Fe~lT~mAf~~F~~~~vD~aVlEVG~GGr~D~TNvi~~P~VavITnIg~DHl~~LG-~TleeIA~~KagI~---K~g 873 (1255)
| .+|+.+|.+.++|++|+|+|+||++|.++.+.+|+++|||||+.||++++| +|+|+||.+|++|+ +++
T Consensus 531 p-------~sa~~~l~~~~vd~aVlE~~~ggil~~gl~~~~pdvaVITNI~~DHL~~~g~~tlE~ia~~K~~i~~~i~~~ 603 (864)
T TIGR02068 531 P-------ASARRILMDPTVDAAVLETARGGILREGLAFDRCDVGVVTNIAGDHLGIGDINTIEDLADVKRVVVEVVLPD 603 (864)
T ss_pred h-------HHHHHHhhCCCCCEEEEEccCCchhhccCCcccccEEEEecCCHHHcCCCCCCCHHHHHHHHHHHHHhhcCC
Confidence 1 345566789999999999999999999999989999999999999999887 79999999999995 789
Q ss_pred ceEEEccCCCChhHHHHHHHhhhcCCeEEEcCC--ccc------------eec--------cC---------CccccCCC
Q psy15432 874 CIAVTSANQRGPCKQILLETSRALNCVLLEAPS--ILN------------YRW--------RG---------QPLDEDWK 922 (1255)
Q Consensus 874 ~~av~~~~qd~~~~~vl~~~A~~~~~~l~~~~~--~~~------------~~~--------~~---------~~v~l~L~ 922 (1255)
+++|++. +++...++ .+.+ .++++.++. ... +.. .+ ..+.+.+.
T Consensus 604 g~~VlNa-Dd~~~~~~-a~~~---~~~vi~f~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~lpl~~~ 678 (864)
T TIGR02068 604 GYAVLNA-DDPMVAAM-AEKC---KGKIAYFSMDPNNPTVAAHIADGGRAVYYENGYIVIARGGDEVAIARIAAIPLTMG 678 (864)
T ss_pred CEEEEEC-CCHHHHHH-HHhC---CCCEEEEecCCCChHHHHHHHcCCcEEEEcCCEEEEEecCccccccceeeeccccC
Confidence 9999998 55444332 2222 233333321 000 000 00 01333444
Q ss_pred c--hhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHhhhhhcCCCCCCCCCCCCCCcCCCCCCCCCccccCCCCCCCCc
Q psy15432 923 S--TVQSINISLAIQLAYLWMFRMNKSAELKSVIDKFLAEMRVSSPNETPGGQGHLSSCETPGGQGHLSFSETPGGQGHL 1000 (1255)
Q Consensus 923 G--~hq~~Na~lAiala~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1000 (1255)
| .||++|+++|++++..
T Consensus 679 G~g~~nv~NalaAiaaa~~------------------------------------------------------------- 697 (864)
T TIGR02068 679 GRVAFQIENALAAVAAAWA------------------------------------------------------------- 697 (864)
T ss_pred CcccchHHHHHHHHHHHHH-------------------------------------------------------------
Confidence 5 8999999999998875
Q ss_pred ccccccccCCCCCCCC-HHHHHHHhcCC-----CCCcEEEEeecCcEEEEEcCcCHHHHHHHHHHHHhhhccccCCCccc
Q psy15432 1001 TGNQSSLLMGPHFEID-PKTYRGIKACV-----WPGRVQVIRKNNFKYFLDGAHTTDSIELCAKWFLRKSEAEANPTQSK 1074 (1255)
Q Consensus 1001 ~~n~~~~~~~~~~~i~-~~i~~gL~~~~-----~pGR~E~v~~~~~~vilDgAHNP~S~~a~l~~l~~~~~~~~~~~~~~ 1074 (1255)
++++ +.|.+||++|. ||||||++..++..+|+||||||+|++++++.++...
T Consensus 698 ------------lgi~~e~I~~gL~~F~~~~~~~pGR~e~~~~~g~~vI~DyAHNP~a~~all~~l~~~~---------- 755 (864)
T TIGR02068 698 ------------LGVPIELIRAGIRTFDADAAQAPGRFNLFNLGGAHVLVDYGHNPAAIEAVGAAIRNWP---------- 755 (864)
T ss_pred ------------cCCCHHHHHHHHHhccccccCCCCceEEEEeCCcEEEEEcCCCHHHHHHHHHHHHhcC----------
Confidence 4566 67999999985 9999999976778899999999999999999997642
Q ss_pred CCCCCcEEEEEecCCCCChhhhh---hhhhcCCCCcEEEEcCCCCcccccccCCCCCcccccc--------cccccCCHH
Q psy15432 1075 SSNVIQRILVFNVTGERDPTKLL---SPLLQSNQFEYILVTPNILTNEIRWRGQPLDEDWKST--------VQSINISLA 1143 (1255)
Q Consensus 1075 ~~~~~~~vlVfg~~~drD~~~ll---~~L~~~~~~d~vi~t~~~~~~~~~~~~~~~~~~~~~d--------~~~~~~~~~ 1143 (1255)
.+++++|||+++||+.+.+. +.+ ...+|.|+++.+......+. +. ..+.+... ......+.+
T Consensus 756 ---~~r~i~Vig~~gdr~~~~~~~lg~~l--~~~~d~vil~~~~~~rg~~~-ge-~~~~i~~~~~~~~~~~~v~~~~d~~ 828 (864)
T TIGR02068 756 ---ARRRIGVIGGPGDRRDEDLVEQGELL--GGAFDQIILKEDDDVRGRPR-GE-AAALLRQGLRQSARKAAIEDILDET 828 (864)
T ss_pred ---CCCEEEEECCCCCCChhHHHHHHHHH--HHhCCEEEEEeCCCcCCCCC-ch-HHHHHHHHHHhcCCCCcEEEEcCHH
Confidence 14689999999999666544 445 34589999987654322211 11 01111111 112245777
Q ss_pred HHHHHHHHHcCCCceEEeec
Q psy15432 1144 IQLAYLWMFRMNKSAELKRN 1163 (1255)
Q Consensus 1144 ~~~~~~~~~~~~~~~~l~~~ 1163 (1255)
+.+..+.....+.+.+|+=+
T Consensus 829 eAi~~a~~~a~~gDlVLi~~ 848 (864)
T TIGR02068 829 EAIAAALDDLRAGDLVVIFP 848 (864)
T ss_pred HHHHHHHHhCCCCCEEEEEe
Confidence 88888887777777777654
|
Cyanophycin synthesis is analogous to polyhydroxyalkanoic acid (PHA) biosynthesis, except that PHA polymers lack nitrogen and may be made under nitrogen-limiting conditions. |
| >PRK11930 putative bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-36 Score=385.37 Aligned_cols=395 Identities=14% Similarity=0.160 Sum_probs=273.4
Q ss_pred ceEEEeccccc--ccccceeeccCCCCCCCCCCcccHHHHHHHHHhcchhHHHHHHhhc-cCC---cccccccchHHHHH
Q psy15432 632 YHILVTGSLHL--VGAFLNVLITPHASRSNKEIPQSYVDAIKQLNTLQSNIRTIRESKL-RKD---PVEMQAVQVDQVVQ 705 (1255)
Q Consensus 632 ~~vlvtGSlhL--VGgvL~~l~~~ha~~~~~~~~~~y~~a~~~L~~lqsn~~~l~~~~~-~g~---~~~~~~~~v~~~~~ 705 (1255)
..-+.+.|+.+ ..|.|++..+++.++.+ +++.+...+++..--+.+ ... ..+.+...|+|+++
T Consensus 24 i~~i~~DSR~v~~~~g~lFval~G~~~DGh-----------~fi~~A~~~GA~~iv~~~~~~~~~~~~~~~~i~V~d~~~ 92 (822)
T PRK11930 24 IDQILTDSRSLSFPENTLFFALKGERNDGH-----------RYIQELYEKGVRNFVVSEEKHPEESYPDANFLKVKDPLK 92 (822)
T ss_pred eCEEEecCCccCCCCCcEEEEeCCCCCCHH-----------HHHHHHHHCCCEEEEEeccccccccCCCCCEEEECCHHH
Confidence 44588899998 89999999988754433 233222222211000000 000 00123478999999
Q ss_pred HHHHhcCcccccccceEEEecCCCCCccHHHHHHHHHHHCCCCeEEEcCcccccccceeeeCCeecChhhhhhHHHHHHH
Q psy15432 706 YLGHLNITLDDIKKLNVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTKYFWTVYN 785 (1255)
Q Consensus 706 ~L~~Lg~~~~~~~~l~vIhVTGTnGKgST~aml~sILr~~G~rtGl~tSPhL~~~~ERI~InG~pIs~~~f~~~~~~v~~ 785 (1255)
+|+.|+...+...++++|+||||||||||++|+++||+..|..+ .++. ++|..| |.|.+.
T Consensus 93 al~~la~~~~~~~~~~vIgVTGT~GKTTT~~ll~~iL~~~~~~~---~~~~--~~n~~i---g~p~~~------------ 152 (822)
T PRK11930 93 ALQELAAYHRSQFDIPVIGITGSNGKTIVKEWLYQLLSPDYNIV---RSPR--SYNSQI---GVPLSV------------ 152 (822)
T ss_pred HHHHHHHHHHHhCCCCEEEEeCCCcHHHHHHHHHHHHhccCcEe---cCCc--ccCcch---hHHHHH------------
Confidence 99999887777677899999999999999999999999877543 3332 333333 443220
Q ss_pred HHHHHhhcCCCCCcHHHHHHHHHHHhhhcCCCCEEEEecccC--CccccccccCCCcEEEEcCCCchhhhhcCCCHHHHH
Q psy15432 786 ALHAKRKHAEDMPAYFKFLTVMSFYVFVKEKPDAVIMEVGIG--GRYDNTNIIPNTAVVGITSLGYDHTAVLGNTIEEIT 863 (1255)
Q Consensus 786 ~l~~~~~~~~~~pt~Fe~lT~mAf~~F~~~~vD~aVlEVG~G--Gr~D~TNvi~~P~VavITnIg~DHl~~LG~TleeIA 863 (1255)
.....++|++|+|+|+. |.++...-+-+|+++|||||+.||+++|| |+|+|+
T Consensus 153 -------------------------~~~~~~~~~~V~E~s~s~~~~~~~l~~~~~PdiaViTNI~~dHLd~~g-t~e~y~ 206 (822)
T PRK11930 153 -------------------------WQLNEEHELGIFEAGISQPGEMEALQKIIKPTIGILTNIGGAHQENFR-SIKQKI 206 (822)
T ss_pred -------------------------hcCCCCCcEEEEEeCCCCCChHHHHhhhhCCCEEEEcCccHHHHhhcC-CHHHHH
Confidence 01356889999999977 66664444337999999999999999999 999999
Q ss_pred HHHhccccCCceEEEccCCCChhHHHHHHHhhhcCCeEEEcCC---c--------------ccee--ccC--CccccCCC
Q psy15432 864 MQKAGIMKPNCIAVTSANQRGPCKQILLETSRALNCVLLEAPS---I--------------LNYR--WRG--QPLDEDWK 922 (1255)
Q Consensus 864 ~~KagI~K~g~~av~~~~qd~~~~~vl~~~A~~~~~~l~~~~~---~--------------~~~~--~~~--~~v~l~L~ 922 (1255)
.+|+.||+....+|++. +++....++.+... ...++.++. . ..+. ..+ ..+.++++
T Consensus 207 ~aK~~i~~~~~~~vin~-Dd~~~~~~~~~~~~--~~~~~~~g~~~~~~d~~~~~i~~~~~~~~~~~~~~~~~~~~~l~l~ 283 (822)
T PRK11930 207 MEKLKLFKDCDVIIYNG-DNELISSCITKSNL--TLKLISWSRKDPEAPLYIPFVEKKEDHTVISYTYKGEDFHFEIPFI 283 (822)
T ss_pred HHHHHHhcCCCEEEEeC-CCHHHHHHHHhhhc--CCcEEEEcCCCCCCcEEEEEEEEcCCceEEEEEeCCceEEEEecCC
Confidence 99999999877888887 44444333332211 111222210 0 0111 111 24678999
Q ss_pred chhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHhhhhhcCCCCCCCCCCCCCCcCCCCCCCCCccccCCCCCCCCccc
Q psy15432 923 STVQSINISLAIQLAYLWMFRMNKSAELKSVIDKFLAEMRVSSPNETPGGQGHLSSCETPGGQGHLSFSETPGGQGHLTG 1002 (1255)
Q Consensus 923 G~hq~~Na~lAiala~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1002 (1255)
|.||++|+++|++++..
T Consensus 284 G~hnv~NalaAia~a~~--------------------------------------------------------------- 300 (822)
T PRK11930 284 DDASIENLIHCIAVLLY--------------------------------------------------------------- 300 (822)
T ss_pred CHHHHHHHHHHHHHHHH---------------------------------------------------------------
Confidence 99999999999998775
Q ss_pred ccccccCCCCCCCC-HHHHHHHhcCC-CCCcEEEEee-cCcEEEEE-cCcCHHHHHHHHHHHHhhhccccCCCcccCCCC
Q psy15432 1003 NQSSLLMGPHFEID-PKTYRGIKACV-WPGRVQVIRK-NNFKYFLD-GAHTTDSIELCAKWFLRKSEAEANPTQSKSSNV 1078 (1255)
Q Consensus 1003 n~~~~~~~~~~~i~-~~i~~gL~~~~-~pGR~E~v~~-~~~~vilD-gAHNP~S~~a~l~~l~~~~~~~~~~~~~~~~~~ 1078 (1255)
+|++ +++.++|++|+ +|||||++.. ++.++|.| |||||+||+++++.++.... .
T Consensus 301 ----------lGi~~~~i~~~L~~f~~~~gR~e~~~~~~g~~vIdDSyn~nP~s~~aaL~~l~~~~~------------~ 358 (822)
T PRK11930 301 ----------LGYSADQIQERMARLEPVAMRLEVKEGINNCTLINDSYNSDLQSLDIALDFLNRRSQ------------S 358 (822)
T ss_pred ----------cCCCHHHHHHHHHhCCCCCCeeEEEEcCCCcEEEECCCCCCHHHHHHHHHHHHhccc------------C
Confidence 4666 67999999999 9999999974 46788999 99999999999999986431 1
Q ss_pred CcEEEEEecCCC--CChh----hhhhhhhcCCCCcEEEEcCCCCcccccccCCCCCcccccccccccCCHHHHHHHHHHH
Q psy15432 1079 IQRILVFNVTGE--RDPT----KLLSPLLQSNQFEYILVTPNILTNEIRWRGQPLDEDWKSTVQSINISLAIQLAYLWMF 1152 (1255)
Q Consensus 1079 ~~~vlVfg~~~d--rD~~----~ll~~L~~~~~~d~vi~t~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 1152 (1255)
+++++|+|.|.+ .+.. .+.+.+ ....+|.+++.+......... +......+..+.++..+.+...
T Consensus 359 ~~~ilIlG~m~elG~~~~~~~~~l~~~l-~~~~i~~vi~~G~~~~~~~~~--------~~~~~~~~~~~~e~a~~~l~~~ 429 (822)
T PRK11930 359 KKKTLILSDILQSGQSPEELYRKVAQLI-SKRGIDRLIGIGEEISSEASK--------FEGTEKEFFKTTEAFLKSFAFL 429 (822)
T ss_pred CCEEEEECChHhcCchHHHHHHHHHHHH-HHcCCCEEEEECHHHHHHHHh--------cCccccEEECCHHHHHHHHHHh
Confidence 467999997754 2233 334444 335688999887653321111 1111123456788999999999
Q ss_pred cCCCceEEeecCCCCCCccccccccccc
Q psy15432 1153 RMNKSAELKRNQSSLPMGPHFEIDPKTY 1180 (1255)
Q Consensus 1153 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 1180 (1255)
..+.+++|+||||++.|+++.+.+.+..
T Consensus 430 ~~~gDvVLlKGSr~~~le~i~~~~~~~~ 457 (822)
T PRK11930 430 KFRNELILVKGARKFEFEQITELLEQKV 457 (822)
T ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHHhh
Confidence 9999999999999999998887775544
|
|
| >PRK14093 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanine ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-35 Score=358.60 Aligned_cols=344 Identities=18% Similarity=0.159 Sum_probs=239.5
Q ss_pred eccccccccccccCCCceeEeecccccCCcccccccCCCCCCCcHHHHHHHHHhcchhHHHHHhhhcCCCcccccccchH
Q psy15432 10 KELKLNKDAHRKTLPDKTEVHHGGYKHGAVTPHASRSNKEIPQSYVDAIKQLNTLQSNIRTIRESKLRKDPVEMQAVQVD 89 (1255)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~eai~~L~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 89 (1255)
.++..+..+||++.|+.+||+++|-+.+++.|+.+...++..-..-+- .....+ ..+.+ ..-|+
T Consensus 26 ~~i~~i~~DSR~v~~g~lFval~G~~~DGh~fi~~A~~~GA~~~v~~~-~~~~~~-----------~~~~~----~i~V~ 89 (479)
T PRK14093 26 RDVTGISIDSRTLAPGDAYFAIKGDVHDGHAFVAAALKAGAALAVVER-AQRDKF-----------AADAP----LLVVD 89 (479)
T ss_pred CceeEEEeecCCCCCCCEEEEeccCcCChHHHHHHHHHcCCcEEEEec-cccccc-----------CCCCC----EEEEC
Confidence 468889999999999999999999999999987665554332111100 000000 00111 25789
Q ss_pred HHHHHHHHhcCCccCCCCccEEEEcCCCChhHHHHHHHHHHHHCCCCeEEEcCCcccccceeEEeCCeecChhhhhhHHH
Q psy15432 90 QVVQYLGHLNITLDDIKKLNVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTKYFW 169 (1255)
Q Consensus 90 ~~~~~L~~Lg~~~~~~~~l~vIhVtGTnGKgST~a~l~sIL~~~G~k~Gl~tSPhL~~~rERI~InG~~is~~~ft~~~~ 169 (1255)
+++++|+.|+..+++..++++|+||||||||||+.|++++|+..|.++++.++-. ..+ |.|.+
T Consensus 90 d~~~al~~la~~~~~~~~~~vIgVTGS~GKTTT~~ml~~iL~~~g~~~~~~g~~n-----~~i---G~p~~--------- 152 (479)
T PRK14093 90 DVLAALRDLGRAARARLEAKVIAVTGSVGKTSTKEALRGVLGAQGETHASVASFN-----NHW---GVPLS--------- 152 (479)
T ss_pred CHHHHHHHHHHHHHHhcCCCEEEEcCCCCccHHHHHHHHHHHhcCCccCCCccCC-----Ccc---chhHH---------
Confidence 9999999999888877788999999999999999999999999997766554421 111 11110
Q ss_pred HHHHHHHhhhhccCCcchHHHHHHHHhhhhhhccCCCEEEEeeccC--Ccccc-ccccCCccEEEEcCCCcchhhhcCCC
Q psy15432 170 TVYNALHAKRKHAEDMPAYFKFLTVMSFYVFVKEKPDAVIMEVGIG--GRYDN-TNIIPNTAVVGITSLGYDHTAVLGNT 246 (1255)
Q Consensus 170 ~v~~~l~~~~~~~~~~p~~Fe~Lt~~A~~~F~~~~vD~aVlEvG~G--Gr~D~-tnii~~P~v~vITnIg~DHld~lG~T 246 (1255)
+. - ...++|++|+|+|+. |+++. +..+ +|+++|||||+.||+++|| |
T Consensus 153 ------------------------l~---~-~~~~~~~~V~E~g~s~~~e~~~~~~~~-~PdiaViTNI~~DHLd~~g-t 202 (479)
T PRK14093 153 ------------------------LA---R-CPADARFAVFEIGMNHAGEIEPLVKMV-RPHVAIITTVEPVHLEFFS-G 202 (479)
T ss_pred ------------------------HH---c-CCCCCcEEEEEeCCCCCchHHHHhccc-CCCEEEEcCCCHHHHhhcC-C
Confidence 00 0 236789999999976 44443 3333 7999999999999999999 9
Q ss_pred HHHHHHHHHccc---CCCceeeeccCCCchHHHHHHHhhhcc---CceEEEcCCcce--------------eeec----C
Q psy15432 247 IEEITMQKAGIM---KPNCIAVTSANQRGPCKQILLETSRAL---NCVLLEAPSILN--------------YRWR----G 302 (1255)
Q Consensus 247 le~Ia~~KagI~---k~g~~~v~~~~q~~e~~~vl~~~a~~~---~~~l~~~~~~~~--------------~~~~----~ 302 (1255)
+|+|+.+|..|| +++..+|++. +++.. ..+.+.+... .+..|......+ +.+. .
T Consensus 203 ~e~~~~aK~~l~~~~~~~g~~VlN~-Dd~~~-~~l~~~~~~~~~~~vi~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (479)
T PRK14093 203 IEAIADAKAEIFTGLEPGGAAVLNR-DNPQF-DRLAASARAAGIARIVSFGADEKADARLLDVALHADCSAVHADILGHD 280 (479)
T ss_pred HHHHHHHHHHHHccCCCCCEEEEeC-CcHHH-HHHHHHhhhccCCcEEEEeCCCCccEEEEEEEEcCCceEEEEEECCce
Confidence 999999999999 4556778876 55443 3343333211 111222211111 1111 1
Q ss_pred cccccCCCchhHHhhHHHHHHHHHHHHHhhccchhhhhHHHHhhhhhccCCCCCCCCCCCCCCccCCCCCCCCccccCCC
Q psy15432 303 QPLDEDWKSTVQSINISLAIQLAYLWMFRMNKSAELKSVIDKFLAEMRVSSPNETPGGQGHLSSCETPGGQGHLSFSETP 382 (1255)
Q Consensus 303 ~~i~l~l~G~~q~~Na~lAia~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (1255)
..+.++++|.||++|+++|++++..+
T Consensus 281 ~~~~l~l~G~hnv~NalaAia~a~~l------------------------------------------------------ 306 (479)
T PRK14093 281 VTYKLGMPGRHIAMNSLAVLAAAELA------------------------------------------------------ 306 (479)
T ss_pred EEEEecCCCHHHHHHHHHHHHHHHHc------------------------------------------------------
Confidence 24678999999999999999988764
Q ss_pred CCCCCccccccccCCCCCCCChHHHHHHHhcCC-CCCceEEEEe---cC-cEEEEc-cCCCHHHHHHHHHHHHhhhhccc
Q psy15432 383 GGQGHLTGNQSSLLMGPHFEIDPKTYRGIKACV-WPGRVQVIRK---NN-FKYFLD-GAHTTDSIELCAKWFLRKSEAEA 456 (1255)
Q Consensus 383 ~~~~~~~~~~~~l~~~~~~~l~e~i~~gL~~~~-~pGR~e~v~~---~~-~~vilD-gAHnp~si~~~l~~l~~~~~~~~ 456 (1255)
|++ .++++++|++++ .|||+|.++. ++ ..+|.| |||||+||+++++++++.....
T Consensus 307 -----------------Gi~-~~~i~~~l~~~~~~~gR~~~~r~~~~~~~~~iIDDsYahnP~s~~aaL~~l~~~~~~~- 367 (479)
T PRK14093 307 -----------------GAD-LALAALALSQVQPAAGRGVRHTLEVGGGEATLIDESYNANPASMAAALGVLGRAPVGP- 367 (479)
T ss_pred -----------------CCC-HHHHHHHHHhCCCcCCcceEEEeecCCCCEEEEECCCCCCHHHHHHHHHHHHhhhccC-
Confidence 667 899999999999 9999998753 23 444445 9999999999999998753100
Q ss_pred ccCccCCCCCCCCCccCCCCCccEEEEEecC---CCC---ChhhhhHHhhccCCCcEEEEcC
Q psy15432 457 SSSRSVSSCPLDPTQSKSSNVIQRILVFNVT---GER---DPTKLLSPLLQSNQFEYILVTP 512 (1255)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~~~~~~ilVfg~~---~dr---D~~~ll~~L~~~~~~d~vi~t~ 512 (1255)
++|+|+|||.| +++ -+.++.+.+ +...+|.|+++.
T Consensus 368 --------------------~~r~i~V~G~m~elg~~~~~~h~~~~~~~-~~~~~d~v~~~G 408 (479)
T PRK14093 368 --------------------QGRRIAVLGDMLELGPRGPELHRGLAEAI-RANAIDLVFCCG 408 (479)
T ss_pred --------------------CCCEEEEECChHHcCcHHHHHHHHHHHHH-HHcCCCEEEEEc
Confidence 12789999986 333 244555555 445689999983
|
|
| >PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-35 Score=355.92 Aligned_cols=329 Identities=14% Similarity=0.075 Sum_probs=229.3
Q ss_pred chHHHHHHHHHhcCcccccccceEEEecCCCCCccHHHHHHHHHHHCCCCeEEEcCcccccccceeeeCCeecChhhhhh
Q psy15432 699 QVDQVVQYLGHLNITLDDIKKLNVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTK 778 (1255)
Q Consensus 699 ~v~~~~~~L~~Lg~~~~~~~~l~vIhVTGTnGKgST~aml~sILr~~G~rtGl~tSPhL~~~~ERI~InG~pIs~~~f~~ 778 (1255)
.+.++..+.. +-.+. .+.++|+||||||||||++|+++||+..|.++++.++. |.|+...
T Consensus 105 v~~~~e~~~~-~~~~~---~~~~~I~VTGTnGKTTTt~mi~~iL~~~g~~~~~~Gni------------g~~~~~~---- 164 (480)
T PRK01438 105 VWGEVELAWR-LRDPD---RPAPWLAVTGTNGKTTTVQMLASMLRAAGLRAAAVGNI------------GTPVLDA---- 164 (480)
T ss_pred ecchHHHHHH-hhhcc---CCCCEEEEeCCCcHHHHHHHHHHHHHHcCCCeEEECCc------------cHHHHHH----
Confidence 4555554333 32222 24679999999999999999999999999988765441 4443210
Q ss_pred HHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHHhhhcCCCCEEEEecccCCccccccccCCCcEEEEcCCCchhhhhcCCC
Q psy15432 779 YFWTVYNALHAKRKHAEDMPAYFKFLTVMSFYVFVKEKPDAVIMEVGIGGRYDNTNIIPNTAVVGITSLGYDHTAVLGNT 858 (1255)
Q Consensus 779 ~~~~v~~~l~~~~~~~~~~pt~Fe~lT~mAf~~F~~~~vD~aVlEVG~GGr~D~TNvi~~P~VavITnIg~DHl~~LG~T 858 (1255)
+....+.|++|+|+|+++. +..+++ +|+++|||||++||+++|| |
T Consensus 165 --------------------------------~~~~~~~~~~V~E~ss~~l-~~~~~i-~P~iaVITNI~~DHld~lg-t 209 (480)
T PRK01438 165 --------------------------------VRDPEGYDVLAVELSSFQL-HWSPSV-SPHSAAVLNLAPDHLDWHG-S 209 (480)
T ss_pred --------------------------------HhcCCCCCEEEEEcChHHh-CcCccc-CCCEEEEecCChhhccccC-C
Confidence 0144578999999999854 566766 6999999999999999999 9
Q ss_pred HHHHHHHHhccccCC-ceEEEccCCCChhHHHHHHHhhhcCCeEEEcCCc----cc------------eecc--CC----
Q psy15432 859 IEEITMQKAGIMKPN-CIAVTSANQRGPCKQILLETSRALNCVLLEAPSI----LN------------YRWR--GQ---- 915 (1255)
Q Consensus 859 leeIA~~KagI~K~g-~~av~~~~qd~~~~~vl~~~A~~~~~~l~~~~~~----~~------------~~~~--~~---- 915 (1255)
+|+|+.+|++||+++ ..+|++. +++.+.+++.+.+.+.+++++.++.. .. +... +.
T Consensus 210 ~e~ia~~K~~I~~~~~~~~v~n~-dd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (480)
T PRK01438 210 MEAYAAAKARIYEGTTVACVYNV-ADPATEDLVEEADVVEGARAIGFTLGTPGPSQLGVVDGILVDRAFVEDRQTSALEL 288 (480)
T ss_pred HHHHHHHHHHHHhCCCceEEEeC-CcHHHHHHHhhhcccCCceEEEEeCCCCCCCCceEECCEEEEEeecccccccccee
Confidence 999999999999976 4566766 56666666665554445555443210 00 1011 00
Q ss_pred --ccccCCCchhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHhhhhhcCCCCCCCCCCCCCCcCCCCCCCCCccccCC
Q psy15432 916 --PLDEDWKSTVQSINISLAIQLAYLWMFRMNKSAELKSVIDKFLAEMRVSSPNETPGGQGHLSSCETPGGQGHLSFSET 993 (1255)
Q Consensus 916 --~v~l~L~G~hq~~Na~lAiala~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 993 (1255)
...++++|.||++|+++|++++..
T Consensus 289 ~~~~~l~l~G~hn~~Na~aAia~~~~------------------------------------------------------ 314 (480)
T PRK01438 289 ATLEDLRPAAPHNIANALAAAALARS------------------------------------------------------ 314 (480)
T ss_pred eeHHHcCCCCHHHHHHHHHHHHHHHH------------------------------------------------------
Confidence 124789999999999999997764
Q ss_pred CCCCCCcccccccccCCCCCCCC-HHHHHHHhcCC-CCCcEEEEeecCcEEEEE--cCcCHHHHHHHHHHHHhhhccccC
Q psy15432 994 PGGQGHLTGNQSSLLMGPHFEID-PKTYRGIKACV-WPGRVQVIRKNNFKYFLD--GAHTTDSIELCAKWFLRKSEAEAN 1069 (1255)
Q Consensus 994 ~~~~~~~~~n~~~~~~~~~~~i~-~~i~~gL~~~~-~pGR~E~v~~~~~~vilD--gAHNP~S~~a~l~~l~~~~~~~~~ 1069 (1255)
++++ +.+.+||++++ ||||||++...+..+|+| |||||+|++++++.++
T Consensus 315 -------------------lgi~~~~i~~~L~~~~~~~gR~E~i~~~~~~~iiDDs~ahNp~a~~aaL~~l~-------- 367 (480)
T PRK01438 315 -------------------FGVPPAAVRDGLRAFRPDAHRIEHVADADGVTWVDDSKATNPHAAAASLAAYP-------- 367 (480)
T ss_pred -------------------cCCCHHHHHHHHHhCCCCCCceEEEEEECCEEEEecCccCCHHHHHHHHHhCC--------
Confidence 4566 67999999999 779999997653334555 9999999999887651
Q ss_pred CCcccCCCCCcEEEEEe-cCCCCChhhhhhhhhcCCCCcEEEEcCCCCcccccccCCCCCccccccccccc-----CCHH
Q psy15432 1070 PTQSKSSNVIQRILVFN-VTGERDPTKLLSPLLQSNQFEYILVTPNILTNEIRWRGQPLDEDWKSTVQSIN-----ISLA 1143 (1255)
Q Consensus 1070 ~~~~~~~~~~~~vlVfg-~~~drD~~~ll~~L~~~~~~d~vi~t~~~~~~~~~~~~~~~~~~~~~d~~~~~-----~~~~ 1143 (1255)
++++||| ++.|||.+.|++.+ ...++.+++++........... .....-..... .+.+
T Consensus 368 ----------~i~~I~gG~~~~kd~~~~~~~l--~~~~~~vi~~g~~~~~~~~~l~----~~~~~~~~~~~~~~~~~~~~ 431 (480)
T PRK01438 368 ----------SVVWIAGGLAKGADFDDLVRRA--AGRLRGVVLIGADRAEIAEALA----RHAPDVPVVEVDRTDTGAMD 431 (480)
T ss_pred ----------CEEEEEecccCCCCHHHHHHHH--HhhceEEEEECCCHHHHHHHHH----hcCCCCCEEEecCCCcCCHH
Confidence 4689995 99999999999988 3347888888654322211110 00000011111 1678
Q ss_pred HHHHHHHHHcCC-CceEEeecCCCCCCc-------cccccccccc
Q psy15432 1144 IQLAYLWMFRMN-KSAELKRNQSSLPMG-------PHFEIDPKTY 1180 (1255)
Q Consensus 1144 ~~~~~~~~~~~~-~~~~l~~~~~~~~~~-------~~~~~~~~~~ 1180 (1255)
+.++.+.....+ +.+.+..++.|++|- ++|..+.+..
T Consensus 432 ~A~~~a~~~~~~~d~vllsp~~as~d~f~~~~~Rg~~F~~~v~~~ 476 (480)
T PRK01438 432 EAVAAAAKLARPGDTVLLAPAAASMDMFTDYAARGDAFAAAVRAL 476 (480)
T ss_pred HHHHHHHHhCCCCCEEEechhhhccccccCHHHHHHHHHHHHHHh
Confidence 888777654443 678899999999997 5555555544
|
|
| >PRK10773 murF UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-35 Score=350.82 Aligned_cols=335 Identities=16% Similarity=0.134 Sum_probs=236.1
Q ss_pred eccccccccccccCCCceeEeecccccCCcccccccCCCCCCCcH-HHHHHHHHhcchhHHHHHhhhcCCCcccccccch
Q psy15432 10 KELKLNKDAHRKTLPDKTEVHHGGYKHGAVTPHASRSNKEIPQSY-VDAIKQLNTLQSNIRTIRESKLRKDPVEMQAVQV 88 (1255)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y-~eai~~L~~l~~~~~~~~~~~~~~~~~~~~~~~l 88 (1255)
.+++.+..+||++.|+.+||+.+|-+.+++.|+.+...+....-. ++++ ..+.| .+.+
T Consensus 22 ~~i~~v~~DSR~v~~g~lFval~G~~~dGh~fi~~A~~~Ga~~vv~~~~~-----------------~~~~p----~i~v 80 (453)
T PRK10773 22 ITIDAVTTDTRKVTPGCLFVALKGERFDAHDFADDAKAAGAGALLVSRPL-----------------DIDLP----QLVV 80 (453)
T ss_pred eeeeEEEeeCCCCCCCcEEEEecCCCCCHHHHHHHHHHCCCeEEEEecCc-----------------CCCCC----EEEE
Confidence 478899999999999999999999999999887665554332111 1100 00112 2677
Q ss_pred HHHHHHHHHhcCCccCCCCccEEEEcCCCChhHHHHHHHHHHHHCCCCeEEEcCCcccccceeEEeCCeecChhhhhhHH
Q psy15432 89 DQVVQYLGHLNITLDDIKKLNVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTKYF 168 (1255)
Q Consensus 89 ~~~~~~L~~Lg~~~~~~~~l~vIhVtGTnGKgST~a~l~sIL~~~G~k~Gl~tSPhL~~~rERI~InG~~is~~~ft~~~ 168 (1255)
++++.+|+.|+...++.+..++|+||||||||||+.|+++||+..|..++ ++. +++..+ |.|.+
T Consensus 81 ~d~~~al~~la~~~~~~~~~~vI~VTGSnGKTTT~~ml~~iL~~~g~~~~---t~g--n~n~~~---G~~~~-------- 144 (453)
T PRK10773 81 KDTRLAFGQLAAWVRQQVPARVVALTGSSGKTSVKEMTAAILRQCGNTLY---TAG--NLNNDI---GVPLT-------- 144 (453)
T ss_pred CCHHHHHHHHHHHHHhcCCCCEEEEcCCCchHHHHHHHHHHHHhcCcccc---cCc--cccCCc---ccccH--------
Confidence 88999999998887766678999999999999999999999999987533 332 111111 22221
Q ss_pred HHHHHHHHhhhhccCCcchHHHHHHHHhhhhhhccCCCEEEEeeccC--CccccccccCCccEEEEcCCCcchhhhcCCC
Q psy15432 169 WTVYNALHAKRKHAEDMPAYFKFLTVMSFYVFVKEKPDAVIMEVGIG--GRYDNTNIIPNTAVVGITSLGYDHTAVLGNT 246 (1255)
Q Consensus 169 ~~v~~~l~~~~~~~~~~p~~Fe~Lt~~A~~~F~~~~vD~aVlEvG~G--Gr~D~tnii~~P~v~vITnIg~DHld~lG~T 246 (1255)
.+ ....++|++|||+|+. |+++..--+.+|+++|||||+.||+++|| |
T Consensus 145 -------------------~~----------~~~~~~~~~V~E~g~~~~gei~~~~~~~~p~iaViTNI~~dHld~~g-s 194 (453)
T PRK10773 145 -------------------LL----------RLTPEHDYAVIELGANHQGEIAYTVSLTRPEAALVNNLAAAHLEGFG-S 194 (453)
T ss_pred -------------------Hh----------cCCCCCcEEEEEcCCCCcchhHHhcCccCCCEEEEeCCCHHHHhhcC-C
Confidence 00 0234689999999975 77764433337999999999999999999 9
Q ss_pred HHHHHHHHHcccC---CCceeeeccCCCchHHHHHHHhhhccCceEEEcCC----------------cceeeec----Cc
Q psy15432 247 IEEITMQKAGIMK---PNCIAVTSANQRGPCKQILLETSRALNCVLLEAPS----------------ILNYRWR----GQ 303 (1255)
Q Consensus 247 le~Ia~~KagI~k---~g~~~v~~~~q~~e~~~vl~~~a~~~~~~l~~~~~----------------~~~~~~~----~~ 303 (1255)
+|+|+.+|+.||+ ++..+|++. +++. ...+.+.........|.... ...+.+. ..
T Consensus 195 ~e~~~~aK~~l~~~~~~~g~~vln~-Dd~~-~~~~~~~~~~~~~~~~g~~~~~~~d~~~~~i~~~~~~~~f~~~~~~~~~ 272 (453)
T PRK10773 195 LAGVAKAKGEIFSGLPENGIAIMNA-DSND-WLNWQSVIGSKTVWRFSPNAANSVDFTATNIHVTSHGTEFTLHTPTGSV 272 (453)
T ss_pred HHHHHHHHHHHHcccCCCCEEEEEC-CcHh-HHHHHHHhcCCcEEEEeCCCCCcCcEEEEEEEEeCCeeEEEEEecCceE
Confidence 9999999999995 345677776 4443 33333322211111222110 0011111 12
Q ss_pred ccccCCCchhHHhhHHHHHHHHHHHHHhhccchhhhhHHHHhhhhhccCCCCCCCCCCCCCCccCCCCCCCCccccCCCC
Q psy15432 304 PLDEDWKSTVQSINISLAIQLAYLWMFRMNKSAELKSVIDKFLAEMRVSSPNETPGGQGHLSSCETPGGQGHLSFSETPG 383 (1255)
Q Consensus 304 ~i~l~l~G~~q~~Na~lAia~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (1255)
.+.++++|.||++|+++|++++..+
T Consensus 273 ~~~l~l~G~hnv~NalaAia~a~~l------------------------------------------------------- 297 (453)
T PRK10773 273 DVLLPLPGRHNIANALAAAALAMSV------------------------------------------------------- 297 (453)
T ss_pred EEEecCCcHhHHHHHHHHHHHHHHc-------------------------------------------------------
Confidence 4678999999999999999988765
Q ss_pred CCCCccccccccCCCCCCCChHHHHHHHhcCC-CCCceEEEEe-cCcEEEEc-cCCCHHHHHHHHHHHHhhhhcccccCc
Q psy15432 384 GQGHLTGNQSSLLMGPHFEIDPKTYRGIKACV-WPGRVQVIRK-NNFKYFLD-GAHTTDSIELCAKWFLRKSEAEASSSR 460 (1255)
Q Consensus 384 ~~~~~~~~~~~l~~~~~~~l~e~i~~gL~~~~-~pGR~e~v~~-~~~~vilD-gAHnp~si~~~l~~l~~~~~~~~~~~~ 460 (1255)
|++ ++.+.++|++++ +|||||++.. ++.++|.| |||||+||+++++.++.. ++
T Consensus 298 ----------------Gi~-~~~i~~~L~~~~~~~gR~e~v~~~~g~~iIDDsYn~nP~s~~aaL~~l~~~-~~------ 353 (453)
T PRK10773 298 ----------------GAT-LDAVKAGLANLKAVPGRLFPIQLAEGQLLLDDSYNANVGSMTAAAQVLAEM-PG------ 353 (453)
T ss_pred ----------------CCC-HHHHHHHHHhCCCCCCceeEEECCCCeEEEEcCCCCCHHHHHHHHHHHHhC-CC------
Confidence 667 899999999999 9999999874 45666667 999999999999999864 21
Q ss_pred cCCCCCCCCCccCCCCCccEEEEEecCCCC------ChhhhhHHhhccCCCcEEEEc
Q psy15432 461 SVSSCPLDPTQSKSSNVIQRILVFNVTGER------DPTKLLSPLLQSNQFEYILVT 511 (1255)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~~ilVfg~~~dr------D~~~ll~~L~~~~~~d~vi~t 511 (1255)
++++|||.|.+- -+.++.+.+ +...+|.++++
T Consensus 354 ------------------r~i~VlG~m~elG~~~~~~h~~~~~~~-~~~~~d~v~~~ 391 (453)
T PRK10773 354 ------------------YRVMVVGDMAELGAESEACHRQVGEAA-KAAGIDKVLSV 391 (453)
T ss_pred ------------------CEEEEECChhhcchHHHHHHHHHHHHH-HHcCCCEEEEE
Confidence 578999987652 233444444 44568999876
|
|
| >PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-34 Score=347.19 Aligned_cols=302 Identities=17% Similarity=0.120 Sum_probs=212.9
Q ss_pred cceEEEecCCCCCccHHHHHHHHHHHCCCCeEEEcCcccccccceeeeCCeecChhhhhhHHHHHHHHHHHHhhcCCCCC
Q psy15432 719 KLNVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTKYFWTVYNALHAKRKHAEDMP 798 (1255)
Q Consensus 719 ~l~vIhVTGTnGKgST~aml~sILr~~G~rtGl~tSPhL~~~~ERI~InG~pIs~~~f~~~~~~v~~~l~~~~~~~~~~p 798 (1255)
+.++|+||||||||||++|+++||+.+|+++.+-++ | |.|+....
T Consensus 113 ~~~vI~VTGT~GKTTTt~ll~~iL~~~g~~~~~~gn---------i---g~~~~~~~----------------------- 157 (460)
T PRK01390 113 DAPFIAITGTNGKSTTTALIAHILREAGRDVQMGGN---------I---GTAVLTLE----------------------- 157 (460)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHHhcCCCeEEcCc---------c---chhhhhcc-----------------------
Confidence 358999999999999999999999999988754432 2 44432100
Q ss_pred cHHHHHHHHHHHhhhcCCCCEEEEecccCCccccccccCCCcEEEEcCCCchhhhhcCCCHHHHHHHHhccccCC--ceE
Q psy15432 799 AYFKFLTVMSFYVFVKEKPDAVIMEVGIGGRYDNTNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIMKPN--CIA 876 (1255)
Q Consensus 799 t~Fe~lT~mAf~~F~~~~vD~aVlEVG~GGr~D~TNvi~~P~VavITnIg~DHl~~LG~TleeIA~~KagI~K~g--~~a 876 (1255)
...+.|++|+|+|+.+ +|.||++ +|+++|||||++||+++|| |+|+|+.+|++||++. +++
T Consensus 158 --------------~~~~~~~~V~E~~~~~-ld~t~~i-~P~iaVITNI~~DHld~lg-sle~ia~~K~~ii~~~~~~~~ 220 (460)
T PRK01390 158 --------------PPPAGRVYVLELSSYQ-IDLAPSL-DPDVGVLLNLTPDHLDRHG-TMEGYAAAKERLFAGQGPDTA 220 (460)
T ss_pred --------------cCCCCCEEEEEcCccc-ccccccc-CCCEEEEecCChhHhcccC-CHHHHHHHHHHHHhcCCCCEE
Confidence 2236799999999976 6999998 6999999999999999999 8999999999999987 789
Q ss_pred EEccCCCChhHHHHHHHhhhcCCeEEEcCCcc------------ceeccCC----ccc----cCCCchhHHHHHHHHHHH
Q psy15432 877 VTSANQRGPCKQILLETSRALNCVLLEAPSIL------------NYRWRGQ----PLD----EDWKSTVQSINISLAIQL 936 (1255)
Q Consensus 877 v~~~~qd~~~~~vl~~~A~~~~~~l~~~~~~~------------~~~~~~~----~v~----l~L~G~hq~~Na~lAial 936 (1255)
|++. +++....+ .+.+...+++++.++... .+..... .+. ++++|.||+.|+++|+++
T Consensus 221 V~n~-dd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~hn~~Na~aAiaa 298 (460)
T PRK01390 221 VIGV-DDAYCRAI-ADRLEAAGRRVVRISAGKPLADGVYADGGKLVDARGGRQVEIADLRGIPSLPGAHNAQNAAAAYAA 298 (460)
T ss_pred EEeC-CCHHHHHH-HHhccccCceEEEEeCCCCCcCceEEeCCEEEEecCCCcceeeeHHhhccCCchhHHHHHHHHHHH
Confidence 9987 55555544 343433455555443210 0111100 011 478999999999999998
Q ss_pred HHHHHHhhcchhhhhhHHHHHhhhhhcCCCCCCCCCCCCCCcCCCCCCCCCccccCCCCCCCCcccccccccCCCCCCCC
Q psy15432 937 AYLWMFRMNKSAELKSVIDKFLAEMRVSSPNETPGGQGHLSSCETPGGQGHLSFSETPGGQGHLTGNQSSLLMGPHFEID 1016 (1255)
Q Consensus 937 a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~i~ 1016 (1255)
+.. +|++
T Consensus 299 ~~~-------------------------------------------------------------------------lgi~ 305 (460)
T PRK01390 299 ARA-------------------------------------------------------------------------LGLS 305 (460)
T ss_pred HHH-------------------------------------------------------------------------cCCC
Confidence 875 4566
Q ss_pred -HHHHHHHhcCC-CCCcEEEEee-cCcEEEEE-cCcCHHHHHHHHHHHHhhhccccCCCcccCCCCCcEEEEEecCCCCC
Q psy15432 1017 -PKTYRGIKACV-WPGRVQVIRK-NNFKYFLD-GAHTTDSIELCAKWFLRKSEAEANPTQSKSSNVIQRILVFNVTGERD 1092 (1255)
Q Consensus 1017 -~~i~~gL~~~~-~pGR~E~v~~-~~~~vilD-gAHNP~S~~a~l~~l~~~~~~~~~~~~~~~~~~~~~vlVfg~~~drD 1092 (1255)
+.+.+||+++. ||||||++.. ++..+|.| |||||+|++++++.+ .++++|+|...+++
T Consensus 306 ~~~i~~gL~~~~~~~gR~e~i~~~~g~~vIdDs~ahNp~s~~~aL~~~------------------~~i~~I~G~~d~~~ 367 (460)
T PRK01390 306 PEEIAAGLASFPGLAHRMEQVGRRGGVLFVNDSKATNADAAAKALSSF------------------DRIYWIAGGKPKEG 367 (460)
T ss_pred HHHHHHHHHhCCCCCCceEEEeeeCCcEEEEcCCCCCHHHHHHHHHhC------------------CCeEEEecCccCCC
Confidence 67999999996 9999999986 46677779 999999999887743 24688998544444
Q ss_pred hhhhhhhhhcCCCCcEEEEcCCCCcccccccCCCCCccccc-ccccccCCHHHHHHHHHHHc----CC-CceEEeecCCC
Q psy15432 1093 PTKLLSPLLQSNQFEYILVTPNILTNEIRWRGQPLDEDWKS-TVQSINISLAIQLAYLWMFR----MN-KSAELKRNQSS 1166 (1255)
Q Consensus 1093 ~~~ll~~L~~~~~~d~vi~t~~~~~~~~~~~~~~~~~~~~~-d~~~~~~~~~~~~~~~~~~~----~~-~~~~l~~~~~~ 1166 (1255)
.-+.|..+ . ..++.+++++.....-.... +. .......+.++.+..++... .+ +.+.|..|+.|
T Consensus 368 ~~~~L~~~-~-~~v~~v~~~g~~~~~l~~~~--------~~~~~~~~~~~l~~Av~~a~~~a~~~~~~g~~vllsP~~as 437 (460)
T PRK01390 368 GIESLAPF-F-PRIAKAYLIGEAAEAFAATL--------GGAVPFEICGTLERAVAAAAADAAADGAPEPVVLLSPACAS 437 (460)
T ss_pred CHHHHHHH-H-HhhCEEEEECCCHHHHHHHH--------hcCCCEEEeCCHHHHHHHHHHhhhccCCCCCEEEeChhhhc
Confidence 44444444 2 34666777654332221111 11 11223457888888887765 44 56778889999
Q ss_pred CCCcccccc
Q psy15432 1167 LPMGPHFEI 1175 (1255)
Q Consensus 1167 ~~~~~~~~~ 1175 (1255)
++|-+-|+.
T Consensus 438 ~d~f~~~~~ 446 (460)
T PRK01390 438 FDQFKNFEV 446 (460)
T ss_pred cccccCHHH
Confidence 999855543
|
|
| >COG0769 MurE UDP-N-acetylmuramyl tripeptide synthase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-34 Score=344.29 Aligned_cols=337 Identities=19% Similarity=0.163 Sum_probs=250.0
Q ss_pred chHHHHHHHHH-----hcCcccccccceEEEecCCCCCccHHHHHHHHHHHCCCCeEEEcCcccccccceeee-CCeecC
Q psy15432 699 QVDQVVQYLGH-----LNITLDDIKKLNVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKL-NGEPIS 772 (1255)
Q Consensus 699 ~v~~~~~~L~~-----Lg~~~~~~~~l~vIhVTGTnGKgST~aml~sILr~~G~rtGl~tSPhL~~~~ERI~I-nG~pIs 772 (1255)
.+.+++..+.. .+.|. .++++|+||||||||||+.++.++++..|.++++.++-. ..+ .|...+
T Consensus 68 ~V~~~~~~~~~~a~~~y~~ps---~~l~vigvTGTNgKTt~t~~~~~~~~~~g~~~~~~gT~g-------~~~~~~~~~~ 137 (475)
T COG0769 68 VVTGTNGKLTTLALAFYGLPS---GKLKVIGVTGTNGKTTTTSLLAQILKKLGKKTALIGTEG-------DELSPGILEP 137 (475)
T ss_pred EEcCcHHHHHHHHHHhccCcc---cCceEEEEcCCCcHHHHHHHHHHHHHhcCCceEEEEEEe-------eeccCCcccc
Confidence 44444444433 35554 568999999999999999999999999999999998754 222 233332
Q ss_pred hhhhhhHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHHhhhcCCCCEEEEecccC----CccccccccCCCcEEEEcCCC
Q psy15432 773 YDKFTKYFWTVYNALHAKRKHAEDMPAYFKFLTVMSFYVFVKEKPDAVIMEVGIG----GRYDNTNIIPNTAVVGITSLG 848 (1255)
Q Consensus 773 ~~~f~~~~~~v~~~l~~~~~~~~~~pt~Fe~lT~mAf~~F~~~~vD~aVlEVG~G----Gr~D~TNvi~~P~VavITnIg 848 (1255)
....++..-.+++.+.+ +++.+++++|||++++ +|.+.+.+ +++++|||+
T Consensus 138 ~~~tTP~~~~l~~~~~~----------------------~~d~~~e~~vmEvssh~l~~~Rv~~~~f----~v~~ftnls 191 (475)
T COG0769 138 TGLTTPEALDLQNLLRD----------------------LLDRGAEIAVMEVSSHGLVQGRVEGVTF----DVGVFTNLS 191 (475)
T ss_pred cCCCCccHHHHHHHHHH----------------------HHHcCCcEEEEEeehhHHHhCCccCceE----EEEeccccC
Confidence 22333333333333333 3889999999999998 78888887 688999999
Q ss_pred chhhhhcCCCHHHHHHHHhcccc---CCceEEEccCCCChhHHHHHHHhhhcCCeEEEcCCcc-----------------
Q psy15432 849 YDHTAVLGNTIEEITMQKAGIMK---PNCIAVTSANQRGPCKQILLETSRALNCVLLEAPSIL----------------- 908 (1255)
Q Consensus 849 ~DHl~~LG~TleeIA~~KagI~K---~g~~av~~~~qd~~~~~vl~~~A~~~~~~l~~~~~~~----------------- 908 (1255)
.||++++| |+|+|+..|..+|+ ++..+|+++ |++....++..........+.++...
T Consensus 192 ~DHlD~h~-t~e~Y~~aK~~lf~~~~~~~~~Vin~--dd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 268 (475)
T COG0769 192 RDHLDYHG-TMEYYGAAKAVLFESLPHSGEAVINP--DDGHGLDYKERLKNALGDYITYGCDFKRPDLDYRGIEESSSGS 268 (475)
T ss_pred chhhcccC-cHHHHHHHHHHHHhhcCCCccEEEcc--CCchHHHHHHHHHhcCCCEEEeCCCCchhhhhhccceeeeccc
Confidence 99999999 99999999999985 667889998 44444333444433322333333210
Q ss_pred ----ceeccCCccccCCCchhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHhhhhhcCCCCCCCCCCCCCCcCCCCCC
Q psy15432 909 ----NYRWRGQPLDEDWKSTVQSINISLAIQLAYLWMFRMNKSAELKSVIDKFLAEMRVSSPNETPGGQGHLSSCETPGG 984 (1255)
Q Consensus 909 ----~~~~~~~~v~l~L~G~hq~~Na~lAiala~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 984 (1255)
.+.+....+.++|+|.||++|+++|++++..
T Consensus 269 ~~~~~~~~~~~~~~~~L~G~fNv~NaLaA~a~~~~--------------------------------------------- 303 (475)
T COG0769 269 DFVFEPSGGIGEYELPLPGLFNVYNALAAVAAALA--------------------------------------------- 303 (475)
T ss_pred eeEEEccCCceeEeccccchhHHHHHHHHHHHHHH---------------------------------------------
Confidence 1123335678999999999999999998876
Q ss_pred CCCccccCCCCCCCCcccccccccCCCCCCCC-HHHHHHHhcCC-CCCcEEEEeecCcEEEEEcCcCHHHHHHHHHHHHh
Q psy15432 985 QGHLSFSETPGGQGHLTGNQSSLLMGPHFEID-PKTYRGIKACV-WPGRVQVIRKNNFKYFLDGAHTTDSIELCAKWFLR 1062 (1255)
Q Consensus 985 ~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~i~-~~i~~gL~~~~-~pGR~E~v~~~~~~vilDgAHNP~S~~a~l~~l~~ 1062 (1255)
+|+| ++|+++|++++ +|||||.+..++..+++||||||+|++.+++.++.
T Consensus 304 ----------------------------lG~~~e~i~~~l~~~~~v~GRmE~v~~~~~~v~VDyAHnPd~le~~L~~~~~ 355 (475)
T COG0769 304 ----------------------------LGVDLEDILAGLETLKPVPGRMELVNIGGKLVIVDYAHNPDGLEKALRAVRL 355 (475)
T ss_pred ----------------------------cCCCHHHHHHHHHhcCCCCCcceEecCCCCeEEEEeccChHHHHHHHHHHHh
Confidence 5677 77999999999 99999999988889999999999999999999984
Q ss_pred hhccccCCCcccCCCCCcEEEEEecCCCCChhhhhhhhh---cCCCCcEEEEcCCCCcccccccCCCCCccccc----cc
Q psy15432 1063 KSEAEANPTQSKSSNVIQRILVFNVTGERDPTKLLSPLL---QSNQFEYILVTPNILTNEIRWRGQPLDEDWKS----TV 1135 (1255)
Q Consensus 1063 ~~~~~~~~~~~~~~~~~~~vlVfg~~~drD~~~ll~~L~---~~~~~d~vi~t~~~~~~~~~~~~~~~~~~~~~----d~ 1135 (1255)
.. .+++++||||.||||..+ +++| +...+|.+++|+++|+.+.+.. . ..+.-.+ +.
T Consensus 356 ~~-------------~g~li~VfG~gGDrD~~k--r~~mg~ia~~~ad~vivt~dnpR~edp~~-i-~~~i~~g~~~~~~ 418 (475)
T COG0769 356 HA-------------AGRLIVVFGCGGDRDKSK--RPDMGAIAEQLADIVIVTSDNPRSEDPAV-I-LADILAGIEAPEK 418 (475)
T ss_pred hc-------------CCcEEEEECccCCCCccc--ccchHHHHHhcCCcEEEcCCCCCCcCHHH-H-HHHHHhccCCccc
Confidence 32 156999999999999887 6666 5667899999999999886542 0 0000001 11
Q ss_pred ccccCCHHHHHHHHHHHcCCCceEEeecC
Q psy15432 1136 QSINISLAIQLAYLWMFRMNKSAELKRNQ 1164 (1255)
Q Consensus 1136 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 1164 (1255)
..+..+..+.+.++-....+++++++-|.
T Consensus 419 ~~~~~dr~~AI~~ai~~a~~~D~vliagk 447 (475)
T COG0769 419 YEIIEDREEAIRKALDLAKEGDVVLIAGK 447 (475)
T ss_pred eecchhHHHHHHHHHHhhccCCEEEEeec
Confidence 34445889999999998889998887765
|
|
| >PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-33 Score=340.02 Aligned_cols=250 Identities=15% Similarity=0.138 Sum_probs=188.9
Q ss_pred CccEEEEcCCCChhHHHHHHHHHHHHCCCCeEEEcCCcccccceeEEeCCeecChhhhhhHHHHHHHHHHhhhhccCCcc
Q psy15432 107 KLNVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTKYFWTVYNALHAKRKHAEDMP 186 (1255)
Q Consensus 107 ~l~vIhVtGTnGKgST~a~l~sIL~~~G~k~Gl~tSPhL~~~rERI~InG~~is~~~ft~~~~~v~~~l~~~~~~~~~~p 186 (1255)
+.++|+||||||||||++|+++||+.+|.++++.++. |.|+..
T Consensus 121 ~~~~I~VTGTnGKTTTt~mi~~iL~~~g~~~~~~Gni------------g~~~~~------------------------- 163 (480)
T PRK01438 121 PAPWLAVTGTNGKTTTVQMLASMLRAAGLRAAAVGNI------------GTPVLD------------------------- 163 (480)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHHHcCCCeEEECCc------------cHHHHH-------------------------
Confidence 5679999999999999999999999999988765431 222110
Q ss_pred hHHHHHHHHhhhhhhccCCCEEEEeeccCCccccccccCCccEEEEcCCCcchhhhcCCCHHHHHHHHHcccCCCc-eee
Q psy15432 187 AYFKFLTVMSFYVFVKEKPDAVIMEVGIGGRYDNTNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIMKPNC-IAV 265 (1255)
Q Consensus 187 ~~Fe~Lt~~A~~~F~~~~vD~aVlEvG~GGr~D~tnii~~P~v~vITnIg~DHld~lG~Tle~Ia~~KagI~k~g~-~~v 265 (1255)
. .....+.|++|+|+|+++. +..+++ +|+++|||||+.||+++|| |+|+|+.+|++||+++. .+|
T Consensus 164 ------~-----~~~~~~~~~~V~E~ss~~l-~~~~~i-~P~iaVITNI~~DHld~lg-t~e~ia~~K~~I~~~~~~~~v 229 (480)
T PRK01438 164 ------A-----VRDPEGYDVLAVELSSFQL-HWSPSV-SPHSAAVLNLAPDHLDWHG-SMEAYAAAKARIYEGTTVACV 229 (480)
T ss_pred ------H-----HhcCCCCCEEEEEcChHHh-CcCccc-CCCEEEEecCChhhccccC-CHHHHHHHHHHHHhCCCceEE
Confidence 0 0134578999999999865 556766 6999999999999999999 99999999999999764 455
Q ss_pred eccCCCchHHHHHHHhhhccCceEEEcCC----cce------------eeec--Cc------ccccCCCchhHHhhHHHH
Q psy15432 266 TSANQRGPCKQILLETSRALNCVLLEAPS----ILN------------YRWR--GQ------PLDEDWKSTVQSINISLA 321 (1255)
Q Consensus 266 ~~~~q~~e~~~vl~~~a~~~~~~l~~~~~----~~~------------~~~~--~~------~i~l~l~G~~q~~Na~lA 321 (1255)
++. +++.+..++.+.+.+.+++++.++. ..+ +... +. ...++++|.||++|+++|
T Consensus 230 ~n~-dd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~hn~~Na~aA 308 (480)
T PRK01438 230 YNV-ADPATEDLVEEADVVEGARAIGFTLGTPGPSQLGVVDGILVDRAFVEDRQTSALELATLEDLRPAAPHNIANALAA 308 (480)
T ss_pred EeC-CcHHHHHHHhhhcccCCceEEEEeCCCCCCCCceEECCEEEEEeeccccccccceeeeHHHcCCCCHHHHHHHHHH
Confidence 655 6677776666554444444433210 000 1011 00 124789999999999999
Q ss_pred HHHHHHHHHhhccchhhhhHHHHhhhhhccCCCCCCCCCCCCCCccCCCCCCCCccccCCCCCCCCccccccccCCCCCC
Q psy15432 322 IQLAYLWMFRMNKSAELKSVIDKFLAEMRVSSPNETPGGQGHLSSCETPGGQGHLSFSETPGGQGHLTGNQSSLLMGPHF 401 (1255)
Q Consensus 322 ia~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 401 (1255)
++++..+ ++
T Consensus 309 ia~~~~l-----------------------------------------------------------------------gi 317 (480)
T PRK01438 309 AALARSF-----------------------------------------------------------------------GV 317 (480)
T ss_pred HHHHHHc-----------------------------------------------------------------------CC
Confidence 9977654 56
Q ss_pred CChHHHHHHHhcCC-CCCceEEEEec-CcEEEEc-cCCCHHHHHHHHHHHHhhhhcccccCccCCCCCCCCCccCCCCCc
Q psy15432 402 EIDPKTYRGIKACV-WPGRVQVIRKN-NFKYFLD-GAHTTDSIELCAKWFLRKSEAEASSSRSVSSCPLDPTQSKSSNVI 478 (1255)
Q Consensus 402 ~l~e~i~~gL~~~~-~pGR~e~v~~~-~~~vilD-gAHnp~si~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (1255)
+ .+.+++||++++ ||||||++... ++.+|.| |||||+|++++++.+ .
T Consensus 318 ~-~~~i~~~L~~~~~~~gR~E~i~~~~~~~iiDDs~ahNp~a~~aaL~~l------~----------------------- 367 (480)
T PRK01438 318 P-PAAVRDGLRAFRPDAHRIEHVADADGVTWVDDSKATNPHAAAASLAAY------P----------------------- 367 (480)
T ss_pred C-HHHHHHHHHhCCCCCCceEEEEEECCEEEEecCccCCHHHHHHHHHhC------C-----------------------
Confidence 7 899999999999 77999999764 4444445 999999999988765 1
Q ss_pred cEEEEEe-cCCCCChhhhhHHhhccCCCcEEEEc
Q psy15432 479 QRILVFN-VTGERDPTKLLSPLLQSNQFEYILVT 511 (1255)
Q Consensus 479 ~~ilVfg-~~~drD~~~ll~~L~~~~~~d~vi~t 511 (1255)
++++||| +..+||...|++.+ ...+|.+|++
T Consensus 368 ~i~~I~gG~~~~kd~~~~~~~l--~~~~~~vi~~ 399 (480)
T PRK01438 368 SVVWIAGGLAKGADFDDLVRRA--AGRLRGVVLI 399 (480)
T ss_pred CEEEEEecccCCCCHHHHHHHH--HhhceEEEEE
Confidence 5789996 99999999999988 3457889888
|
|
| >PRK11930 putative bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-34 Score=361.99 Aligned_cols=344 Identities=13% Similarity=0.140 Sum_probs=239.7
Q ss_pred ecccccccccccc--CCCceeEeecccccCCcccccccCCCCCCCcHHHHHHHHHhcchhHHHHHhhhcCCCcccccccc
Q psy15432 10 KELKLNKDAHRKT--LPDKTEVHHGGYKHGAVTPHASRSNKEIPQSYVDAIKQLNTLQSNIRTIRESKLRKDPVEMQAVQ 87 (1255)
Q Consensus 10 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~eai~~L~~l~~~~~~~~~~~~~~~~~~~~~~~ 87 (1255)
.+++.+..+||++ .|+.+||+++|-+.+++.|+.+...++...-.-+- +. ... ....+.+ .+.
T Consensus 22 ~~i~~i~~DSR~v~~~~g~lFval~G~~~DGh~fi~~A~~~GA~~iv~~~-~~----~~~------~~~~~~~----~i~ 86 (822)
T PRK11930 22 AIIDQILTDSRSLSFPENTLFFALKGERNDGHRYIQELYEKGVRNFVVSE-EK----HPE------ESYPDAN----FLK 86 (822)
T ss_pred ceeCEEEecCCccCCCCCcEEEEeCCCCCCHHHHHHHHHHCCCEEEEEec-cc----ccc------ccCCCCC----EEE
Confidence 4688899999999 99999999999999998887666555332111100 00 000 0000111 267
Q ss_pred hHHHHHHHHHhcCCccCCCCccEEEEcCCCChhHHHHHHHHHHHHCCCCeEEEcCCcccccceeEEeCCeecChhhhhhH
Q psy15432 88 VDQVVQYLGHLNITLDDIKKLNVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTKY 167 (1255)
Q Consensus 88 l~~~~~~L~~Lg~~~~~~~~l~vIhVtGTnGKgST~a~l~sIL~~~G~k~Gl~tSPhL~~~rERI~InG~~is~~~ft~~ 167 (1255)
|++++++|+.|+..++...++++|+||||||||||+.|+++||+..|..++. +. +++.+ +..+
T Consensus 87 V~d~~~al~~la~~~~~~~~~~vIgVTGT~GKTTT~~ll~~iL~~~~~~~~~---~~--~~n~~------------ig~p 149 (822)
T PRK11930 87 VKDPLKALQELAAYHRSQFDIPVIGITGSNGKTIVKEWLYQLLSPDYNIVRS---PR--SYNSQ------------IGVP 149 (822)
T ss_pred ECCHHHHHHHHHHHHHHhCCCCEEEEeCCCcHHHHHHHHHHHHhccCcEecC---Cc--ccCcc------------hhHH
Confidence 8999999999998887766889999999999999999999999987754433 21 11111 1111
Q ss_pred HHHHHHHHHhhhhccCCcchHHHHHHHHhhhhhhccCCCEEEEeeccC--CccccccccCCccEEEEcCCCcchhhhcCC
Q psy15432 168 FWTVYNALHAKRKHAEDMPAYFKFLTVMSFYVFVKEKPDAVIMEVGIG--GRYDNTNIIPNTAVVGITSLGYDHTAVLGN 245 (1255)
Q Consensus 168 ~~~v~~~l~~~~~~~~~~p~~Fe~Lt~~A~~~F~~~~vD~aVlEvG~G--Gr~D~tnii~~P~v~vITnIg~DHld~lG~ 245 (1255)
. + +. ....++|++|||+|+. |..+...-+.+|+++|||||+.||+++||
T Consensus 150 ~------------------~------~~----~~~~~~~~~V~E~s~s~~~~~~~l~~~~~PdiaViTNI~~dHLd~~g- 200 (822)
T PRK11930 150 L------------------S------VW----QLNEEHELGIFEAGISQPGEMEALQKIIKPTIGILTNIGGAHQENFR- 200 (822)
T ss_pred H------------------H------Hh----cCCCCCcEEEEEeCCCCCChHHHHhhhhCCCEEEEcCccHHHHhhcC-
Confidence 0 0 00 1357889999999976 55554333337999999999999999999
Q ss_pred CHHHHHHHHHcccCCCceeeeccCCCchHHHHHHHhhhccCceEEEcCC-cc--------------eeee--cC--cccc
Q psy15432 246 TIEEITMQKAGIMKPNCIAVTSANQRGPCKQILLETSRALNCVLLEAPS-IL--------------NYRW--RG--QPLD 306 (1255)
Q Consensus 246 Tle~Ia~~KagI~k~g~~~v~~~~q~~e~~~vl~~~a~~~~~~l~~~~~-~~--------------~~~~--~~--~~i~ 306 (1255)
|+|+|+.+|+.||+....+|++. +++.....+.+.........+.... .. .+.+ .+ ..+.
T Consensus 201 t~e~y~~aK~~i~~~~~~~vin~-Dd~~~~~~~~~~~~~~~~~~~g~~~~~~d~~~~~i~~~~~~~~~~~~~~~~~~~~~ 279 (822)
T PRK11930 201 SIKQKIMEKLKLFKDCDVIIYNG-DNELISSCITKSNLTLKLISWSRKDPEAPLYIPFVEKKEDHTVISYTYKGEDFHFE 279 (822)
T ss_pred CHHHHHHHHHHHhcCCCEEEEeC-CCHHHHHHHHhhhcCCcEEEEcCCCCCCcEEEEEEEEcCCceEEEEEeCCceEEEE
Confidence 99999999999998776677776 5554444333221111111222110 00 1111 11 2467
Q ss_pred cCCCchhHHhhHHHHHHHHHHHHHhhccchhhhhHHHHhhhhhccCCCCCCCCCCCCCCccCCCCCCCCccccCCCCCCC
Q psy15432 307 EDWKSTVQSINISLAIQLAYLWMFRMNKSAELKSVIDKFLAEMRVSSPNETPGGQGHLSSCETPGGQGHLSFSETPGGQG 386 (1255)
Q Consensus 307 l~l~G~~q~~Na~lAia~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (1255)
++++|.||++|+++|++++..+
T Consensus 280 l~l~G~hnv~NalaAia~a~~l---------------------------------------------------------- 301 (822)
T PRK11930 280 IPFIDDASIENLIHCIAVLLYL---------------------------------------------------------- 301 (822)
T ss_pred ecCCCHHHHHHHHHHHHHHHHc----------------------------------------------------------
Confidence 8999999999999999988765
Q ss_pred CccccccccCCCCCCCChHHHHHHHhcCC-CCCceEEEEe-cCcEEEEc-cCCCHHHHHHHHHHHHhhhhcccccCccCC
Q psy15432 387 HLTGNQSSLLMGPHFEIDPKTYRGIKACV-WPGRVQVIRK-NNFKYFLD-GAHTTDSIELCAKWFLRKSEAEASSSRSVS 463 (1255)
Q Consensus 387 ~~~~~~~~l~~~~~~~l~e~i~~gL~~~~-~pGR~e~v~~-~~~~vilD-gAHnp~si~~~l~~l~~~~~~~~~~~~~~~ 463 (1255)
|++ ++++.++|++|+ +|||||++.. +++.+|+| |||||+|+++++++++.....
T Consensus 302 -------------Gi~-~~~i~~~L~~f~~~~gR~e~~~~~~g~~vIdDSyn~nP~s~~aaL~~l~~~~~~--------- 358 (822)
T PRK11930 302 -------------GYS-ADQIQERMARLEPVAMRLEVKEGINNCTLINDSYNSDLQSLDIALDFLNRRSQS--------- 358 (822)
T ss_pred -------------CCC-HHHHHHHHHhCCCCCCeeEEEEcCCCcEEEECCCCCCHHHHHHHHHHHHhcccC---------
Confidence 667 899999999999 9999999974 56889999 999999999999999864321
Q ss_pred CCCCCCCccCCCCCccEEEEEecCCC--C----ChhhhhHHhhccCCCcEEEEc
Q psy15432 464 SCPLDPTQSKSSNVIQRILVFNVTGE--R----DPTKLLSPLLQSNQFEYILVT 511 (1255)
Q Consensus 464 ~~~~~~~~~~~~~~~~~ilVfg~~~d--r----D~~~ll~~L~~~~~~d~vi~t 511 (1255)
.++++|+|.+.+ . .++.+.+.+ ....+|.||+.
T Consensus 359 --------------~~~ilIlG~m~elG~~~~~~~~~l~~~l-~~~~i~~vi~~ 397 (822)
T PRK11930 359 --------------KKKTLILSDILQSGQSPEELYRKVAQLI-SKRGIDRLIGI 397 (822)
T ss_pred --------------CCEEEEECChHhcCchHHHHHHHHHHHH-HHcCCCEEEEE
Confidence 167899887643 2 445555555 33557888885
|
|
| >PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-33 Score=334.72 Aligned_cols=307 Identities=14% Similarity=0.116 Sum_probs=215.6
Q ss_pred cEEEEcCCCChhHHHHHHHHHHHHCCCCeEEEcCCcccccceeEEeCCeecChhhhhhHHHHHHHHHHhhhhccCCcchH
Q psy15432 109 NVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTKYFWTVYNALHAKRKHAEDMPAY 188 (1255)
Q Consensus 109 ~vIhVtGTnGKgST~a~l~sIL~~~G~k~Gl~tSPhL~~~rERI~InG~~is~~~ft~~~~~v~~~l~~~~~~~~~~p~~ 188 (1255)
++|+||||||||||++|+.+||+++|++...+.. |..-... .+
T Consensus 108 ~~I~ITGTnGKTTTt~ll~~iL~~~g~~~~~~~g-------------g~~~~~~----------------------~~-- 150 (461)
T PRK00421 108 TSIAVAGTHGKTTTTSLLAHVLAEAGLDPTFLIG-------------GILNAAG----------------------TN-- 150 (461)
T ss_pred cEEEEECCCCHHHHHHHHHHHHHhcCCCCeEEEC-------------ceeccCC----------------------cc--
Confidence 7999999999999999999999999975333221 1100000 00
Q ss_pred HHHHHHHhhhhhhccCCCEEEEeeccCCccccccccCCccEEEEcCCCcchhhhcCCCHHHHHHHHHccc---CCCceee
Q psy15432 189 FKFLTVMSFYVFVKEKPDAVIMEVGIGGRYDNTNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIM---KPNCIAV 265 (1255)
Q Consensus 189 Fe~Lt~~A~~~F~~~~vD~aVlEvG~GGr~D~tnii~~P~v~vITnIg~DHld~lG~Tle~Ia~~KagI~---k~g~~~v 265 (1255)
+ ...+.|++|+|+|+.... ...+ +|+++|||||+.||+++|| |+|+|+..|..|+ +++..+|
T Consensus 151 ------~-----~~~~~~~~V~E~ss~q~~-~~~~--~p~vaViTNI~~DHld~~g-t~e~y~~ak~k~~~~~~~~~~~V 215 (461)
T PRK00421 151 ------A-----RLGNSDYFVAEADESDRS-FLKL--HPDIAIVTNIDADHLDYYG-DFEDLKDAFQEFAHNLPFYGALV 215 (461)
T ss_pred ------c-----ccCCCCEEEEECCCccch-Hhhc--CCCEEEEccCChhhccccC-CHHHHHHHHHHHHhcCCCCCEEE
Confidence 0 113579999999987431 1223 7999999999999999999 9999998877655 5566777
Q ss_pred eccCCCchHHHHHHHhhhccCceEEEcC--Cc--------------ceeeec--Cc---ccccCCCchhHHhhHHHHHHH
Q psy15432 266 TSANQRGPCKQILLETSRALNCVLLEAP--SI--------------LNYRWR--GQ---PLDEDWKSTVQSINISLAIQL 324 (1255)
Q Consensus 266 ~~~~q~~e~~~vl~~~a~~~~~~l~~~~--~~--------------~~~~~~--~~---~i~l~l~G~~q~~Na~lAia~ 324 (1255)
++. +++.+.....+.. +.++.++ .. ..+.+. +. .+.+++.|.||.+|+++|+++
T Consensus 216 ~n~-dd~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~l~l~G~h~~~N~~aA~a~ 290 (461)
T PRK00421 216 ACG-DDPELRELLPRVS----RPVITYGFSEDADFRAENIRQDGGGTHFDVLRRGEVLGDFTLPLPGRHNVLNALAAIAV 290 (461)
T ss_pred EEC-CCHHHHHHHHhcC----CCEEEecCCCCCcEEEEEEEEcCCceEEEEEECCceEEEEEecCCcHHHHHHHHHHHHH
Confidence 776 5665555443321 1222111 10 011111 01 356789999999999999998
Q ss_pred HHHHHHhhccchhhhhHHHHhhhhhccCCCCCCCCCCCCCCccCCCCCCCCccccCCCCCCCCccccccccCCCCCCCCh
Q psy15432 325 AYLWMFRMNKSAELKSVIDKFLAEMRVSSPNETPGGQGHLSSCETPGGQGHLSFSETPGGQGHLTGNQSSLLMGPHFEID 404 (1255)
Q Consensus 325 a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~ 404 (1255)
+..+ +++ +
T Consensus 291 ~~~l-----------------------------------------------------------------------gv~-~ 298 (461)
T PRK00421 291 ALEL-----------------------------------------------------------------------GID-D 298 (461)
T ss_pred HHHc-----------------------------------------------------------------------CCC-H
Confidence 8764 566 8
Q ss_pred HHHHHHHhcCC-CCCceEEEEec-CcEEEEccCCCHHHHHHHHHHHHhhhhcccccCccCCCCCCCCCccCCCCCccEEE
Q psy15432 405 PKTYRGIKACV-WPGRVQVIRKN-NFKYFLDGAHTTDSIELCAKWFLRKSEAEASSSRSVSSCPLDPTQSKSSNVIQRIL 482 (1255)
Q Consensus 405 e~i~~gL~~~~-~pGR~e~v~~~-~~~vilDgAHnp~si~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il 482 (1255)
+++.++|++|+ ||||||++... ++.||+||||||+++++++++++..... +++++
T Consensus 299 ~~i~~~l~~f~~~~~R~e~~~~~~g~~~i~D~aHnp~~~~a~~~al~~~~~~-----------------------~~i~~ 355 (461)
T PRK00421 299 EAIREALATFKGVKRRFEEKGEVGGVVLIDDYAHHPTEIKATLKAARQGYPD-----------------------KRIVA 355 (461)
T ss_pred HHHHHHHHhCCCCCcccEEEEecCCcEEEEeCCCCHHHHHHHHHHHHhhCCC-----------------------CeEEE
Confidence 99999999997 99999999764 6789999999999999999999875421 27899
Q ss_pred EEe---cCCCCChhh-hhHHhhccCCCcEEEEcCCCCCCCCCCCCcCCCCcccccccccccccCCCCCCCCCCCCCCCCC
Q psy15432 483 VFN---VTGERDPTK-LLSPLLQSNQFEYILVTPNILTNESSPDTQYGGNRTIDRFGVKLDSRTAAPNGGHEPGRPNVGQ 558 (1255)
Q Consensus 483 Vfg---~~~drD~~~-ll~~L~~~~~~d~vi~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 558 (1255)
||| ..++||... |++.+ ..+|.+++|+.+++.|.++...
T Consensus 356 v~gp~~~~r~kd~~~~~~~~l---~~~d~vi~~~~~~~~e~~~~~~---------------------------------- 398 (461)
T PRK00421 356 VFQPHRYSRTRDLLDEFAEAL---SDADEVILLDIYAAGEEPIGGV---------------------------------- 398 (461)
T ss_pred EECCCCCccHHHHHHHHHHHH---HHCCEEEEcCccCCCCCCCCCC----------------------------------
Confidence 998 666777554 55544 4579999998888776531110
Q ss_pred CCCCcccCCCCCcccCCCCCCCcccccccccccchhhHHHHHHhhccCCCcEEEcCCHHHHHHHHhccCCCCCceEEEec
Q psy15432 559 GGGGFQSRSGDNSIRSNANPLSSVDCHNVNDQSNSFHKIATVASALSQRSKVVEFSSVLDTYNFKYGLDPSKEYHILVTG 638 (1255)
Q Consensus 559 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~si~~ai~~~~~~~~~~~~~vlvtG 638 (1255)
..+.|.+.++. ....+..++|+++|++++.... .+++.|||+|
T Consensus 399 ----------------------------------~~~~l~~~~~~--~~~~~~~~~~~~~a~~~a~~~a-~~gD~vlv~G 441 (461)
T PRK00421 399 ----------------------------------DSEDLARKIKR--GHRDPIFVPDLEDLAELLAEVL-KPGDLVLTMG 441 (461)
T ss_pred ----------------------------------CHHHHHHHHhc--cCCceEEeCCHHHHHHHHHHhc-CCCCEEEEEC
Confidence 00224444432 1234678899999999998876 4667899999
Q ss_pred ccc
Q psy15432 639 SLH 641 (1255)
Q Consensus 639 Slh 641 (1255)
.-|
T Consensus 442 ~g~ 444 (461)
T PRK00421 442 AGD 444 (461)
T ss_pred CCC
Confidence 866
|
|
| >PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=339.58 Aligned_cols=306 Identities=17% Similarity=0.138 Sum_probs=218.4
Q ss_pred ceEEEecCCCCCccHHHHHHHHHHHCCCCeEEEcCcccccccceeeeCCeecChhhhhhHHHHHHHHHHHHhhcCCCCCc
Q psy15432 720 LNVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTKYFWTVYNALHAKRKHAEDMPA 799 (1255)
Q Consensus 720 l~vIhVTGTnGKgST~aml~sILr~~G~rtGl~tSPhL~~~~ERI~InG~pIs~~~f~~~~~~v~~~l~~~~~~~~~~pt 799 (1255)
.++|+||||||||||++|+.+||+.+|++++..++ | |.|++.... +.
T Consensus 109 ~~~I~VTGT~GKTTTt~ml~~iL~~~g~~~~~~gn---------i---G~~~~~~~~----------~~----------- 155 (459)
T PRK02705 109 IPWVGITGTNGKTTVTALLAHILQAAGLNAPACGN---------I---GYAACELAL----------LR----------- 155 (459)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHHHcCCCeEEecc---------c---ChhHHHHHh----------hh-----------
Confidence 47999999999999999999999999988765432 2 555432110 00
Q ss_pred HHHHHHHHHHHhhhcCCCCEEEEecccCCccccccccCCCcEEEEcCCCchhhhhcCCCHHHHHHHHhccccCCceEEEc
Q psy15432 800 YFKFLTVMSFYVFVKEKPDAVIMEVGIGGRYDNTNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIMKPNCIAVTS 879 (1255)
Q Consensus 800 ~Fe~lT~mAf~~F~~~~vD~aVlEVG~GGr~D~TNvi~~P~VavITnIg~DHl~~LG~TleeIA~~KagI~K~g~~av~~ 879 (1255)
.....+.|++|+|+|+ +.+|.++.+ +|+++|||||+.||+++|| |+|+|+.+|++|++++.++|++
T Consensus 156 -----------~~~~~~~d~~VlE~~s-~~l~~~~~~-~p~iaVITNI~~DHld~~g-t~e~~~~~K~~i~~~~~~~Vln 221 (459)
T PRK02705 156 -----------SGKAQKPDWIVAELSS-YQIESSPEL-APKIGIWTTFTPDHLERHG-TLENYFAIKASLLERSEIRILN 221 (459)
T ss_pred -----------hccCCCCCEEEEEccc-cccccCccc-CCCEEEEecCChhhhcccC-CHHHHHHHHHHHhccCCEEEEE
Confidence 0134578999999998 578888876 6999999999999999999 9999999999999999999998
Q ss_pred cCCCChhHHHHHHHhhhcCCeEEE-cCC-c--------------cceeccCC---ccccCCCchhHHHHHHHHHHHHHHH
Q psy15432 880 ANQRGPCKQILLETSRALNCVLLE-APS-I--------------LNYRWRGQ---PLDEDWKSTVQSINISLAIQLAYLW 940 (1255)
Q Consensus 880 ~~qd~~~~~vl~~~A~~~~~~l~~-~~~-~--------------~~~~~~~~---~v~l~L~G~hq~~Na~lAiala~~~ 940 (1255)
. +++....+..+. ...++. ... . ..+..... .+.++++|.||..|+++|++++..
T Consensus 222 ~-dd~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~hn~~NalaAia~a~~- 295 (459)
T PRK02705 222 G-DDPYLRQHRSSW----PKGYWTSTQGKASLLGQADGWILEEGWVVERGEPLFPLSALKMPGAHNLQNLLLAVAAARL- 295 (459)
T ss_pred C-CCHHHHHHHhcC----CceEEeccCCccccccccceeEecCCEEEECCcceeeHHHcCCccHHHHHHHHHHHHHHHH-
Confidence 7 555554443221 111111 000 0 00110111 135789999999999999998875
Q ss_pred HHhhcchhhhhhHHHHHhhhhhcCCCCCCCCCCCCCCcCCCCCCCCCccccCCCCCCCCcccccccccCCCCCCCC-HHH
Q psy15432 941 MFRMNKSAELKSVIDKFLAEMRVSSPNETPGGQGHLSSCETPGGQGHLSFSETPGGQGHLTGNQSSLLMGPHFEID-PKT 1019 (1255)
Q Consensus 941 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~i~-~~i 1019 (1255)
+|++ +.+
T Consensus 296 ------------------------------------------------------------------------lgv~~~~i 303 (459)
T PRK02705 296 ------------------------------------------------------------------------AGLSAEAI 303 (459)
T ss_pred ------------------------------------------------------------------------cCCCHHHH
Confidence 4566 679
Q ss_pred HHHHhcCC-CCCcEEEEee-cCcEEEEE-cCcCHHHHHHHHHHHHhhhccccCCCcccCCCCCcEEEEEe-cCCCCChhh
Q psy15432 1020 YRGIKACV-WPGRVQVIRK-NNFKYFLD-GAHTTDSIELCAKWFLRKSEAEANPTQSKSSNVIQRILVFN-VTGERDPTK 1095 (1255)
Q Consensus 1020 ~~gL~~~~-~pGR~E~v~~-~~~~vilD-gAHNP~S~~a~l~~l~~~~~~~~~~~~~~~~~~~~~vlVfg-~~~drD~~~ 1095 (1255)
.++|++|. ||||||++.. ++..||+| |||||+|++++++++. .++++|+| +..++|...
T Consensus 304 ~~~L~~f~~~~gR~e~~~~~~~~~ii~Ds~a~N~~s~~~al~~l~-----------------~~~i~IlGg~~~~~d~~~ 366 (459)
T PRK02705 304 AEALRSFPGVPHRLERIGTINGIDFINDSKATNYDAAEVGLKAVP-----------------GPVILIAGGEAKQGDDSA 366 (459)
T ss_pred HHHHHhCCCCCCceEEEEeeCCcEEEEeCCCCCHHHHHHHHHhCC-----------------CCeEEEecCccCCCCHHH
Confidence 99999997 9999999875 46789999 7999999999998773 24688887 566899999
Q ss_pred hhhhhhcCCCCcEEEEcCCCCcccccccCCCCCcccccccccccCCHHHHHHHHHHHcCC---CceEEeecCCCCCCccc
Q psy15432 1096 LLSPLLQSNQFEYILVTPNILTNEIRWRGQPLDEDWKSTVQSINISLAIQLAYLWMFRMN---KSAELKRNQSSLPMGPH 1172 (1255)
Q Consensus 1096 ll~~L~~~~~~d~vi~t~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~ 1172 (1255)
+++.+ . ...+.+++++........... ... . ........+.++.+..++....+ +.+.|..++.|++|.+-
T Consensus 367 ~~~~l-~-~~~~~vi~~g~~~~~l~~~l~-~~~--~-~~~~~~~~~~~eA~~~a~~~a~~g~~~~vllsp~~as~d~f~~ 440 (459)
T PRK02705 367 WLKQI-K-AKAAAVLLFGEAAPTLAQRLQ-ESG--Y-TGEYEIVETLDEAVPRAFELAKELQAKSVLLSPACASFDQYKN 440 (459)
T ss_pred HHHHH-H-hheeEEEEECCCHHHHHHHHH-hcC--C-CcceEEcCCHHHHHHHHHHHhCCCCCCEEEechhhhhhccccC
Confidence 99888 3 457888888744322111110 000 0 00122345788888777765554 36899999999999844
Q ss_pred c
Q psy15432 1173 F 1173 (1255)
Q Consensus 1173 ~ 1173 (1255)
|
T Consensus 441 ~ 441 (459)
T PRK02705 441 F 441 (459)
T ss_pred H
Confidence 3
|
|
| >PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-33 Score=332.07 Aligned_cols=300 Identities=15% Similarity=0.136 Sum_probs=214.9
Q ss_pred eEEEecCCCCCccHHHHHHHHHHHCCCCeEEEcCcccccccceeeeCCeecChhhhhhHHHHHHHHHHHHhhcCCCCCcH
Q psy15432 721 NVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTKYFWTVYNALHAKRKHAEDMPAY 800 (1255)
Q Consensus 721 ~vIhVTGTnGKgST~aml~sILr~~G~rtGl~tSPhL~~~~ERI~InG~pIs~~~f~~~~~~v~~~l~~~~~~~~~~pt~ 800 (1255)
++|+||||||||||++|+++||+.+|+++.+-++. |.|..
T Consensus 109 ~~I~VTGT~GKTTTt~li~~iL~~~g~~~~~ggni------------g~p~~---------------------------- 148 (448)
T PRK03803 109 PVIAITGSNGKSTVTTLVGEMAKAAGKRVAVGGNI------------GTPAL---------------------------- 148 (448)
T ss_pred CEEEEECCCcHHHHHHHHHHHHHhcCCCeEEecCc------------CHHHH----------------------------
Confidence 79999999999999999999999999977664432 33210
Q ss_pred HHHHHHHHHHhhhcCCCCEEEEecccCCccccccccCCCcEEEEcCCCchhhhhcCCCHHHHHHHHhccccCCceEEEcc
Q psy15432 801 FKFLTVMSFYVFVKEKPDAVIMEVGIGGRYDNTNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIMKPNCIAVTSA 880 (1255)
Q Consensus 801 Fe~lT~mAf~~F~~~~vD~aVlEVG~GGr~D~TNvi~~P~VavITnIg~DHl~~LG~TleeIA~~KagI~K~g~~av~~~ 880 (1255)
. .+..+.|++|+|+++... +.|+.+ +|+++|||||++||+++|| |+|+|+.+|++|++++.++|++.
T Consensus 149 ----~------~~~~~~~~~V~E~ss~~l-~~~~~~-~P~iaVITNI~~DHld~~g-s~e~~~~~K~~i~~~~~~~V~n~ 215 (448)
T PRK03803 149 ----D------LLSDDPELYVLELSSFQL-ETTHSL-NAEVATVLNISEDHMDRYS-DLEAYHQAKHRIYRGAKQVVFNR 215 (448)
T ss_pred ----H------HhcCCCCEEEEEcChhhh-CcCccc-CccEEEEecCChhHcccCC-CHHHHHHHHHHHHhCCCeEEEeC
Confidence 0 023357999999988753 788888 6999999999999999999 89999999999999888898887
Q ss_pred CCCChhHHHHHHHhhhcCCeEEEcCC--------------ccceeccC-C----ccccCCCchhHHHHHHHHHHHHHHHH
Q psy15432 881 NQRGPCKQILLETSRALNCVLLEAPS--------------ILNYRWRG-Q----PLDEDWKSTVQSINISLAIQLAYLWM 941 (1255)
Q Consensus 881 ~qd~~~~~vl~~~A~~~~~~l~~~~~--------------~~~~~~~~-~----~v~l~L~G~hq~~Na~lAiala~~~l 941 (1255)
+++...++... ..+++.++. ...+.+.+ . .+.++++|.||++|+++|++++..
T Consensus 216 -dd~~~~~~~~~-----~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~Hn~~NalaAia~a~~-- 287 (448)
T PRK03803 216 -DDALTRPLVPD-----NQPCLSFGLNAPDFDEWGLREGDGETYLAHGFERLMPVRELKLRGSHNLANALAALALGEA-- 287 (448)
T ss_pred -CCHHHHHHhhc-----CCcEEEEeCCCCCcCceEEEecCCeEEEEeCCceEEehhccCCCCHHHHHHHHHHHHHHHH--
Confidence 55544443221 122222210 00011111 1 256889999999999999998876
Q ss_pred HhhcchhhhhhHHHHHhhhhhcCCCCCCCCCCCCCCcCCCCCCCCCccccCCCCCCCCcccccccccCCCCCCCC-HHHH
Q psy15432 942 FRMNKSAELKSVIDKFLAEMRVSSPNETPGGQGHLSSCETPGGQGHLSFSETPGGQGHLTGNQSSLLMGPHFEID-PKTY 1020 (1255)
Q Consensus 942 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~i~-~~i~ 1020 (1255)
+|++ +.+.
T Consensus 288 -----------------------------------------------------------------------lgi~~~~i~ 296 (448)
T PRK03803 288 -----------------------------------------------------------------------AGLPKEAML 296 (448)
T ss_pred -----------------------------------------------------------------------cCCCHHHHH
Confidence 4566 6799
Q ss_pred HHHhcCC-CCCcEEEEee-cCcEEEEE-cCcCHHHHHHHHHHHHhhhccccCCCcccCCCCCcEEEEEec-CCCCChhhh
Q psy15432 1021 RGIKACV-WPGRVQVIRK-NNFKYFLD-GAHTTDSIELCAKWFLRKSEAEANPTQSKSSNVIQRILVFNV-TGERDPTKL 1096 (1255)
Q Consensus 1021 ~gL~~~~-~pGR~E~v~~-~~~~vilD-gAHNP~S~~a~l~~l~~~~~~~~~~~~~~~~~~~~~vlVfg~-~~drD~~~l 1096 (1255)
+||++|. ||||||++.. +++.||.| +||||+|+.++++.+.... .+++++|+|+ ..++|.+.+
T Consensus 297 ~~L~~f~g~~~R~e~v~~~~gv~~idDs~atN~~a~~~al~~l~~~~-------------~~~iilI~Gg~~k~~d~~~l 363 (448)
T PRK03803 297 EVLRTFTGLPHRCEWVREVAGVDYYNDSKGTNVGATVAAIEGLGAHI-------------QGKLVLIAGGDGKGADFSPL 363 (448)
T ss_pred HHHhhCCCCCCceEEEEEeCCeEEEEcCCcCCHHHHHHHHHhhhhcC-------------CCCEEEEECCCCCCCCHHHH
Confidence 9999998 9999999975 46677888 5999999999999986421 1368899996 477899988
Q ss_pred hhhhhcCCCCcEEEEcCCCCcccccccCCCCCcccccccccccCCHHHHHHHHHHHcCCC-ceEEeecCCCCCCccccc
Q psy15432 1097 LSPLLQSNQFEYILVTPNILTNEIRWRGQPLDEDWKSTVQSINISLAIQLAYLWMFRMNK-SAELKRNQSSLPMGPHFE 1174 (1255)
Q Consensus 1097 l~~L~~~~~~d~vi~t~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~ 1174 (1255)
...+ ...++.+++++.....-.... .......+..+.++.+..+.....+. .+.+..++.|++|.+-|+
T Consensus 364 ~~~l--~~~~~~vil~G~~~~~i~~~l-------~~~~~~~~~~~~~~a~~~a~~~a~~gdvVL~SPa~aSfd~f~~~~ 433 (448)
T PRK03803 364 REPV--AKYVRAVVLIGRDADKIAAAL-------GGAVPLVRVATLAEAVAKAAELAQAGDIVLLSPACASLDMFKNFE 433 (448)
T ss_pred HHHH--HhhCCEEEEECCCHHHHHHHH-------hcCCCEEEeCCHHHHHHHHHHhCCCCCEEEeCchhhcccccCCHH
Confidence 8877 334688888764433221111 00001223347778777776655554 456677999999984443
|
|
| >PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-32 Score=333.50 Aligned_cols=305 Identities=13% Similarity=0.093 Sum_probs=210.8
Q ss_pred eEEEecCCCCCccHHHHHHHHHHHCCCCeEEEcCcccccccceeeeCCeecChhhhhhHHHHHHHHHHHHhhcCCCCCcH
Q psy15432 721 NVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTKYFWTVYNALHAKRKHAEDMPAY 800 (1255)
Q Consensus 721 ~vIhVTGTnGKgST~aml~sILr~~G~rtGl~tSPhL~~~~ERI~InG~pIs~~~f~~~~~~v~~~l~~~~~~~~~~pt~ 800 (1255)
++|+||||||||||++|+.+||+.+|+++.+.++. |.|+...
T Consensus 118 ~vIgITGTnGKTTTt~li~~iL~~~g~~~~~~Gni------------G~p~~~~-------------------------- 159 (488)
T PRK03369 118 RWLVVTGTNGKTTTTSMLHAMLIAAGRRSVLCGNI------------GSPVLDV-------------------------- 159 (488)
T ss_pred CEEEEECCCcHHHHHHHHHHHHHHcCCceEEeCCC------------chHHHHh--------------------------
Confidence 69999999999999999999999999887776652 5553100
Q ss_pred HHHHHHHHHHhhhcCCCCEEEEecccCCccccccccCCCcEEEEcCCCchhhhhcCCCHHHHHHHHhccccCCceEEEcc
Q psy15432 801 FKFLTVMSFYVFVKEKPDAVIMEVGIGGRYDNTNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIMKPNCIAVTSA 880 (1255)
Q Consensus 801 Fe~lT~mAf~~F~~~~vD~aVlEVG~GGr~D~TNvi~~P~VavITnIg~DHl~~LG~TleeIA~~KagI~K~g~~av~~~ 880 (1255)
+..+.|++|+|+|+.+. +.+..+ +|+++|||||++||+++|| |+|+|+.+|++||+. .++|++.
T Consensus 160 ------------~~~~~~~~VlE~ss~ql-~~~~~~-~P~vaVITNI~~DHLd~~g-t~e~ya~aK~~I~~~-~~~Vln~ 223 (488)
T PRK03369 160 ------------LDEPAELLAVELSSFQL-HWAPSL-RPEAGAVLNIAEDHLDWHG-TMAAYAAAKARALTG-RVAVVGL 223 (488)
T ss_pred ------------ccCCCCEEEEECChHHh-Cccccc-CCCEEEEcCCCHHHhhhcC-CHHHHHHHHHHHhcC-CEEEEEC
Confidence 23578999999998853 444444 7999999999999999999 999999999999984 7888887
Q ss_pred CCCChhHHHHHHHhhhcCCeEEEcCC----c-----cc-ee--cc-C----CccccCCCchhHHHHHHHHHHHHHHHHHh
Q psy15432 881 NQRGPCKQILLETSRALNCVLLEAPS----I-----LN-YR--WR-G----QPLDEDWKSTVQSINISLAIQLAYLWMFR 943 (1255)
Q Consensus 881 ~qd~~~~~vl~~~A~~~~~~l~~~~~----~-----~~-~~--~~-~----~~v~l~L~G~hq~~Na~lAiala~~~l~~ 943 (1255)
+++.. ..+.+.+.......+.... . .. +. +. . ..+.++++|.||++|+++|++++..
T Consensus 224 -dd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~hnv~NalaAla~a~~---- 297 (488)
T PRK03369 224 -DDSRA-AALLDTAPAPVRVGFRLGEPAAGELGVRDGHLVDRAFADDLRLAPVASIPVPGPVGVLDALAAAALARA---- 297 (488)
T ss_pred -CCHHH-HHHHHhCCCcEEEEEeCCCCCcCCceEECCEEEEeccCCccceechhhcCCCcHhHHHHHHHHHHHHHH----
Confidence 44444 3333333221111111010 0 00 00 00 0 1256789999999999999998875
Q ss_pred hcchhhhhhHHHHHhhhhhcCCCCCCCCCCCCCCcCCCCCCCCCccccCCCCCCCCcccccccccCCCCCCCC-HHHHHH
Q psy15432 944 MNKSAELKSVIDKFLAEMRVSSPNETPGGQGHLSSCETPGGQGHLSFSETPGGQGHLTGNQSSLLMGPHFEID-PKTYRG 1022 (1255)
Q Consensus 944 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~i~-~~i~~g 1022 (1255)
+|++ +++.++
T Consensus 298 ---------------------------------------------------------------------lGi~~e~i~~~ 308 (488)
T PRK03369 298 ---------------------------------------------------------------------VGVPAGAIADA 308 (488)
T ss_pred ---------------------------------------------------------------------cCCCHHHHHHH
Confidence 4566 679999
Q ss_pred HhcCCC-CCcEEEEeec-CcEEEEE-cCcCHHHHHHHHHHHHhhhccccCCCcccCCCCCcEEEEE-ecCCCCChhhhhh
Q psy15432 1023 IKACVW-PGRVQVIRKN-NFKYFLD-GAHTTDSIELCAKWFLRKSEAEANPTQSKSSNVIQRILVF-NVTGERDPTKLLS 1098 (1255)
Q Consensus 1023 L~~~~~-pGR~E~v~~~-~~~vilD-gAHNP~S~~a~l~~l~~~~~~~~~~~~~~~~~~~~~vlVf-g~~~drD~~~ll~ 1098 (1255)
|++|+| |||||++... ++.||.| |||||+|++++++.+ .++++|| |+++++|.+.|++
T Consensus 309 L~~f~~~~gR~E~v~~~~gv~iIDDS~AhNp~s~~aal~~~------------------~~iilI~GG~~k~~d~~~l~~ 370 (488)
T PRK03369 309 LASFRVGRHRAEVVAVADGITYVDDSKATNPHAARASILAY------------------PRVVWIAGGLLKGASVDALVA 370 (488)
T ss_pred HHhCCCCCCccEEEEcCCCEEEEECCCCCCHHHHHHHHHhC------------------CCeEEEecCcCCCCCHHHHHH
Confidence 999996 9999999764 5544545 899999999999744 1478999 8999999999999
Q ss_pred hhhcCCCCcEEEEcCCCCcccccccCCC-CCcccccc---------------cccc-c-----------CCHHHHHHHHH
Q psy15432 1099 PLLQSNQFEYILVTPNILTNEIRWRGQP-LDEDWKST---------------VQSI-N-----------ISLAIQLAYLW 1150 (1255)
Q Consensus 1099 ~L~~~~~~d~vi~t~~~~~~~~~~~~~~-~~~~~~~d---------------~~~~-~-----------~~~~~~~~~~~ 1150 (1255)
.+ ....+.+++.++..........+- ....+..- .... . .+.++....++
T Consensus 371 ~l--~~~~~~vi~iG~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~av~~a~ 448 (488)
T PRK03369 371 EM--ASRLVGAVLIGRDRAVVAEALSRHAPDVPVVQVVTGEDAGMPATPEVPVACVTDVADDDGETLGDAVMAAAVAAAR 448 (488)
T ss_pred HH--hhheeEEEEEcCCHHHHHHHHHhcCCCCCEEEeccccccccccccccccccccccccccccccchhhHHHHHHHHH
Confidence 88 334677777665433322221100 00000000 0000 0 03777888888
Q ss_pred HHcCC-CceEEeecCCCCCCccccc
Q psy15432 1151 MFRMN-KSAELKRNQSSLPMGPHFE 1174 (1255)
Q Consensus 1151 ~~~~~-~~~~l~~~~~~~~~~~~~~ 1174 (1255)
....+ +.|.|..++.|++|.+-|+
T Consensus 449 ~~a~~gd~vLlSPacaSfd~f~~y~ 473 (488)
T PRK03369 449 RLARPGDTVLLAPAGASFDQFTGYG 473 (488)
T ss_pred HhCCCCCEEEeChhhcccccccCHH
Confidence 75555 5788899999999985443
|
|
| >PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-32 Score=329.60 Aligned_cols=302 Identities=14% Similarity=0.118 Sum_probs=213.2
Q ss_pred ceEEEecCCCCCccHHHHHHHHHHHCCCCeEEEcCcccccccceeeeCCeecChhhhhhHHHHHHHHHHHHhhcCCCCCc
Q psy15432 720 LNVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTKYFWTVYNALHAKRKHAEDMPA 799 (1255)
Q Consensus 720 l~vIhVTGTnGKgST~aml~sILr~~G~rtGl~tSPhL~~~~ERI~InG~pIs~~~f~~~~~~v~~~l~~~~~~~~~~pt 799 (1255)
.++|+||||||||||++|+++||+.+|.++.+.++- |.|+.... ..
T Consensus 110 ~~~I~ITGT~GKTTTt~li~~iL~~~g~~~~~~Gni------------G~~~~~~~------------~~---------- 155 (445)
T PRK04308 110 DKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNI------------GTPVLEAE------------LQ---------- 155 (445)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHHHcCCCeEEeCCc------------cHHHHHHH------------Hh----------
Confidence 479999999999999999999999999887555442 44432110 00
Q ss_pred HHHHHHHHHHHhhhcCCCCEEEEecccCCccccccccCCCcEEEEcCCCchhhhhcCCCHHHHHHHHhccccCCceEEEc
Q psy15432 800 YFKFLTVMSFYVFVKEKPDAVIMEVGIGGRYDNTNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIMKPNCIAVTS 879 (1255)
Q Consensus 800 ~Fe~lT~mAf~~F~~~~vD~aVlEVG~GGr~D~TNvi~~P~VavITnIg~DHl~~LG~TleeIA~~KagI~K~g~~av~~ 879 (1255)
-..+++|++|+|+|+ +.+|.++.+ +|+++|||||+.||+++|| |+|+|+.+|++|++++.++|++
T Consensus 156 ------------~~~~~~d~~VlE~~~-~~l~~~~~~-~p~iaviTNI~~DHld~~~-t~e~~~~~K~~i~~~~~~~i~n 220 (445)
T PRK04308 156 ------------REGKKADVWVLELSS-FQLENTESL-RPTAATVLNISEDHLDRYD-DLLDYAHTKAKIFRGDGVQVLN 220 (445)
T ss_pred ------------hcCCCCcEEEEEeCh-HHhCcCccc-CCCEEEEecCChHHhcccC-CHHHHHHHHHHHhcCCCEEEEe
Confidence 013478999999996 567888888 6999999999999999999 9999999999999999899998
Q ss_pred cCCCChhHHHHHHHhhhcCCeEEEcCCc--cc---------eeccCC----ccccCCCchhHHHHHHHHHHHHHHHHHhh
Q psy15432 880 ANQRGPCKQILLETSRALNCVLLEAPSI--LN---------YRWRGQ----PLDEDWKSTVQSINISLAIQLAYLWMFRM 944 (1255)
Q Consensus 880 ~~qd~~~~~vl~~~A~~~~~~l~~~~~~--~~---------~~~~~~----~v~l~L~G~hq~~Na~lAiala~~~l~~~ 944 (1255)
. +++.... +.+ .+++++.++.. .+ +.+.+. .+.++++|.||++|+++|++++..
T Consensus 221 ~-dd~~~~~-~~~----~~~~v~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~l~G~hn~~NalaAia~a~~----- 289 (445)
T PRK04308 221 A-DDAFCRA-MKR----AGREVKWFSLEHEADFWLERETGRLKQGNEDLIATQDIPLQGLHNAANVMAAVALCEA----- 289 (445)
T ss_pred C-CcHHHHH-Hhh----cCCcEEEecCCCCCceeEeccCCEEEEcCceeeehhccCCcChhhHHHHHHHHHHHHH-----
Confidence 7 4433222 221 23444444310 01 111111 256899999999999999998875
Q ss_pred cchhhhhhHHHHHhhhhhcCCCCCCCCCCCCCCcCCCCCCCCCccccCCCCCCCCcccccccccCCCCCCCC-HHHHHHH
Q psy15432 945 NKSAELKSVIDKFLAEMRVSSPNETPGGQGHLSSCETPGGQGHLSFSETPGGQGHLTGNQSSLLMGPHFEID-PKTYRGI 1023 (1255)
Q Consensus 945 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~i~-~~i~~gL 1023 (1255)
+|++ +++.+||
T Consensus 290 --------------------------------------------------------------------lgi~~~~i~~~L 301 (445)
T PRK04308 290 --------------------------------------------------------------------VGLPREALLEHV 301 (445)
T ss_pred --------------------------------------------------------------------cCCCHHHHHHHH
Confidence 4566 6799999
Q ss_pred hcCC-CCCcEEEEeec-CcEEEEE-cCcCHHHHHHHHHHHHhhhccccCCCcccCCCCCcEEEEEecC-CCCChhhhhhh
Q psy15432 1024 KACV-WPGRVQVIRKN-NFKYFLD-GAHTTDSIELCAKWFLRKSEAEANPTQSKSSNVIQRILVFNVT-GERDPTKLLSP 1099 (1255)
Q Consensus 1024 ~~~~-~pGR~E~v~~~-~~~vilD-gAHNP~S~~a~l~~l~~~~~~~~~~~~~~~~~~~~~vlVfg~~-~drD~~~ll~~ 1099 (1255)
++++ ||||||++... +.+||.| ++|||+|+.++++.+. .++++|||.+ .++|++.++..
T Consensus 302 ~~f~~~~~R~e~~~~~~~~~~iDDs~~~n~~s~~~al~~~~-----------------~~~i~IlGg~~~~~~~~~~~~~ 364 (445)
T PRK04308 302 KTFQGLPHRVEKIGEKNGVVFIDDSKGTNVGATAAAIAGLQ-----------------NPLFVILGGMGKGQDFTPLRDA 364 (445)
T ss_pred hhCCCCCCceEEEEeeCCeEEEEcCCCCCHHHHHHHHHhCC-----------------CCEEEEeCCCCCCCCHHHHHHH
Confidence 9998 99999999764 5555555 3899999999988662 2578999744 78899888776
Q ss_pred hhcCCCCcEEEEcCCCCcccccccCCCCCcccccccccccCCHHHHHHHHHHHcCCCc-eEEeecCCCCCCccccc
Q psy15432 1100 LLQSNQFEYILVTPNILTNEIRWRGQPLDEDWKSTVQSINISLAIQLAYLWMFRMNKS-AELKRNQSSLPMGPHFE 1174 (1255)
Q Consensus 1100 L~~~~~~d~vi~t~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~ 1174 (1255)
+ ...+|.+++++........... . .+....+..+.++.++.+.....+.+ +.+..++.|++|-+-|+
T Consensus 365 l--~~~~~~vil~G~~~~~l~~~l~----~--~~~~~~~~~~~e~a~~~~~~~~~~~d~VL~sp~~~S~d~f~~~~ 432 (445)
T PRK04308 365 L--AGKAKGVFLIGVDAPQIRRDLD----G--CGLNLTDCATLEEAVQRAYAQAEAGDIVLLSPACASFDMFKGYA 432 (445)
T ss_pred H--HHhCcEEEEECCCHHHHHHHHH----h--cCCCeEecCCHHHHHHHHHHhCCCCCEEEEChhhhhhccccCHH
Confidence 6 3346888887754322111100 0 01112234577787777766655555 45556999999985443
|
|
| >PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-32 Score=328.21 Aligned_cols=298 Identities=14% Similarity=0.143 Sum_probs=212.7
Q ss_pred ceEEEecCCCCCccHHHHHHHHHHHCCCCeEEEcCcccccccceeeeCCeecChhhhhhHHHHHHHHHHHHhhcCCCCCc
Q psy15432 720 LNVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTKYFWTVYNALHAKRKHAEDMPA 799 (1255)
Q Consensus 720 l~vIhVTGTnGKgST~aml~sILr~~G~rtGl~tSPhL~~~~ERI~InG~pIs~~~f~~~~~~v~~~l~~~~~~~~~~pt 799 (1255)
.++|+||||||||||++|+++||+..|++++..++. |.|..
T Consensus 105 ~~~I~VTGTnGKTTTt~ll~~iL~~~g~~~~~~gni------------g~p~~--------------------------- 145 (438)
T PRK03806 105 APIVAITGSNGKSTVTTLVGEMAKAAGWKVGVGGNI------------GLPAL--------------------------- 145 (438)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHHHcCCCEEEeCCc------------chhHH---------------------------
Confidence 369999999999999999999999999988765442 33310
Q ss_pred HHHHHHHHHHHhhhcCCCCEEEEecccCCccccccccCCCcEEEEcCCCchhhhhcCCCHHHHHHHHhccccCCceEEEc
Q psy15432 800 YFKFLTVMSFYVFVKEKPDAVIMEVGIGGRYDNTNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIMKPNCIAVTS 879 (1255)
Q Consensus 800 ~Fe~lT~mAf~~F~~~~vD~aVlEVG~GGr~D~TNvi~~P~VavITnIg~DHl~~LG~TleeIA~~KagI~K~g~~av~~ 879 (1255)
.....+.|++|+|+|+.+ ++.++.+ +|+++|||||+.||+++||+|+|+|+.+|++|++...++|++
T Consensus 146 -----------~~~~~~~~~~V~E~ss~~-l~~~~~~-~p~iaViTNI~~DHld~~g~s~e~~~~~K~~i~~~~~~~v~n 212 (438)
T PRK03806 146 -----------SLLDQECELYVLELSSFQ-LETTSSL-KAAAATILNVTEDHMDRYPFGLQQYRAAKLRIYENAKVCVVN 212 (438)
T ss_pred -----------HhhccCCCEEEEEccchh-hccCccc-CCCEEEEecCcHHHhccccCCHHHHHHHHHHHHhCCCeEEEe
Confidence 013456799999999875 4678888 699999999999999999779999999999999988889988
Q ss_pred cCCCChhHHHHHHHhhhcCCeEEEcCC-ccc----------eec-cCC----ccccCCCchhHHHHHHHHHHHHHHHHHh
Q psy15432 880 ANQRGPCKQILLETSRALNCVLLEAPS-ILN----------YRW-RGQ----PLDEDWKSTVQSINISLAIQLAYLWMFR 943 (1255)
Q Consensus 880 ~~qd~~~~~vl~~~A~~~~~~l~~~~~-~~~----------~~~-~~~----~v~l~L~G~hq~~Na~lAiala~~~l~~ 943 (1255)
. +++.+.. +.+. ..++..++. ... +.. .+. .++++++|.||+.|+++|++++..
T Consensus 213 ~-dd~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~hn~~Na~aAia~a~~---- 282 (438)
T PRK03806 213 A-DDALTMP-IRGA----DKRCVSFGVNMGDYHLNRQQGETWLRVKGEKVLNTKEMKLSGQHNYTNALAALALADA---- 282 (438)
T ss_pred C-CCHHHHH-HhcC----CceEEEEecCCCceEEEecCCeEEEEecCceeeehhhcCCcccccHHHHHHHHHHHHH----
Confidence 7 5554443 2221 122222210 000 111 111 346889999999999999998875
Q ss_pred hcchhhhhhHHHHHhhhhhcCCCCCCCCCCCCCCcCCCCCCCCCccccCCCCCCCCcccccccccCCCCCCCC-HHHHHH
Q psy15432 944 MNKSAELKSVIDKFLAEMRVSSPNETPGGQGHLSSCETPGGQGHLSFSETPGGQGHLTGNQSSLLMGPHFEID-PKTYRG 1022 (1255)
Q Consensus 944 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~i~-~~i~~g 1022 (1255)
+|++ +++.++
T Consensus 283 ---------------------------------------------------------------------lgi~~~~i~~~ 293 (438)
T PRK03806 283 ---------------------------------------------------------------------VGIPRASSLKA 293 (438)
T ss_pred ---------------------------------------------------------------------cCCCHHHHHHH
Confidence 4566 679999
Q ss_pred HhcCC-CCCcEEEEee-cCcEEEEE-cCcCHHHHHHHHHHHHhhhccccCCCcccCCCCCcEEEEEecC-CCCChhhhhh
Q psy15432 1023 IKACV-WPGRVQVIRK-NNFKYFLD-GAHTTDSIELCAKWFLRKSEAEANPTQSKSSNVIQRILVFNVT-GERDPTKLLS 1098 (1255)
Q Consensus 1023 L~~~~-~pGR~E~v~~-~~~~vilD-gAHNP~S~~a~l~~l~~~~~~~~~~~~~~~~~~~~~vlVfg~~-~drD~~~ll~ 1098 (1255)
|++|+ ||||||++.. ++..+|+| |||||+|++++++.++. .+++++|||++ .+.|++.+.+
T Consensus 294 L~~f~~~~gR~E~v~~~~~~~~i~Ds~a~n~~a~~~al~~l~~---------------~~~~i~IlG~~~k~~d~~~l~~ 358 (438)
T PRK03806 294 LTTFTGLPHRFQLVLEHNGVRWINDSKATNVGSTEAALNGLHV---------------DGTLHLLLGGDGKSADFSPLAR 358 (438)
T ss_pred HHhCCCCCCeEEEEEeeCCEEEEEcCCCCCHHHHHHHHHhCcc---------------CCcEEEEECCcCCCCCHHHHHH
Confidence 99998 9999999975 46677777 89999999999998752 13689999987 5568888777
Q ss_pred hhhcCCCCcEEEEcCCCCcccccccCCCCCcccccccccccCCHHHHHHHHHHHcCCC-ceEEeecCCCCCCccccc
Q psy15432 1099 PLLQSNQFEYILVTPNILTNEIRWRGQPLDEDWKSTVQSINISLAIQLAYLWMFRMNK-SAELKRNQSSLPMGPHFE 1174 (1255)
Q Consensus 1099 ~L~~~~~~d~vi~t~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~ 1174 (1255)
.+ ..... .+++++.....-... +. .......+.++.++.+.....+. .+.+..++.|++|-+-|+
T Consensus 359 ~l-~~~~~-~v~~~g~~~~~l~~~--------~~-~~~~~~~~~~~av~~a~~~~~~gd~VLlsp~~as~d~f~~~~ 424 (438)
T PRK03806 359 YL-NGDNI-RLYCFGRDGAQLAAL--------RP-EVSQLTETMEQAMRLIAPRVQPGDMVLLSPACASLDQFKNFE 424 (438)
T ss_pred HH-HhhCc-EEEEECCCHHHHHHH--------hh-cceEecCCHHHHHHHHHHhCCCCCEEEEChhhhhhcCccCHH
Confidence 77 33333 566665432211111 10 11223456788777776554454 566666999999985544
|
|
| >PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-32 Score=329.48 Aligned_cols=248 Identities=17% Similarity=0.154 Sum_probs=179.3
Q ss_pred CccEEEEcCCCChhHHHHHHHHHHHHCCCCeEEEcCCcccccceeEEeCCeecChhhhhhHHHHHHHHHHhhhhccCCcc
Q psy15432 107 KLNVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTKYFWTVYNALHAKRKHAEDMP 186 (1255)
Q Consensus 107 ~l~vIhVtGTnGKgST~a~l~sIL~~~G~k~Gl~tSPhL~~~rERI~InG~~is~~~ft~~~~~v~~~l~~~~~~~~~~p 186 (1255)
+.++|+||||||||||++|+++||+.+|+++.+-++- |.|+..
T Consensus 113 ~~~vI~VTGT~GKTTTt~ll~~iL~~~g~~~~~~gni------------g~~~~~------------------------- 155 (460)
T PRK01390 113 DAPFIAITGTNGKSTTTALIAHILREAGRDVQMGGNI------------GTAVLT------------------------- 155 (460)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHHhcCCCeEEcCcc------------chhhhh-------------------------
Confidence 4589999999999999999999999999887543321 222210
Q ss_pred hHHHHHHHHhhhhhhccCCCEEEEeeccCCccccccccCCccEEEEcCCCcchhhhcCCCHHHHHHHHHcccCCC--cee
Q psy15432 187 AYFKFLTVMSFYVFVKEKPDAVIMEVGIGGRYDNTNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIMKPN--CIA 264 (1255)
Q Consensus 187 ~~Fe~Lt~~A~~~F~~~~vD~aVlEvG~GGr~D~tnii~~P~v~vITnIg~DHld~lG~Tle~Ia~~KagI~k~g--~~~ 264 (1255)
+ ....+.|++|+|+|+.+ +|.||++ +|+++|||||+.||+++|| |+|+|+.+|++||++. .++
T Consensus 156 --------~----~~~~~~~~~V~E~~~~~-ld~t~~i-~P~iaVITNI~~DHld~lg-sle~ia~~K~~ii~~~~~~~~ 220 (460)
T PRK01390 156 --------L----EPPPAGRVYVLELSSYQ-IDLAPSL-DPDVGVLLNLTPDHLDRHG-TMEGYAAAKERLFAGQGPDTA 220 (460)
T ss_pred --------c----ccCCCCCEEEEEcCccc-ccccccc-CCCEEEEecCChhHhcccC-CHHHHHHHHHHHHhcCCCCEE
Confidence 0 01236799999999986 6999998 6999999999999999999 8999999999999987 788
Q ss_pred eeccCCCchHHHHHHHhhhccCceEEEcCCc----c--------eeeecCc------cc--ccCCCchhHHhhHHHHHHH
Q psy15432 265 VTSANQRGPCKQILLETSRALNCVLLEAPSI----L--------NYRWRGQ------PL--DEDWKSTVQSINISLAIQL 324 (1255)
Q Consensus 265 v~~~~q~~e~~~vl~~~a~~~~~~l~~~~~~----~--------~~~~~~~------~i--~l~l~G~~q~~Na~lAia~ 324 (1255)
|++. +++.+..+ .+.+...+++++.++.. . .+..... .+ .+++.|.||++|+++|+++
T Consensus 221 V~n~-dd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~hn~~Na~aAiaa 298 (460)
T PRK01390 221 VIGV-DDAYCRAI-ADRLEAAGRRVVRISAGKPLADGVYADGGKLVDARGGRQVEIADLRGIPSLPGAHNAQNAAAAYAA 298 (460)
T ss_pred EEeC-CCHHHHHH-HHhccccCceEEEEeCCCCCcCceEEeCCEEEEecCCCcceeeeHHhhccCCchhHHHHHHHHHHH
Confidence 8887 56555544 33333334444333211 0 0111110 11 1478999999999999998
Q ss_pred HHHHHHhhccchhhhhHHHHhhhhhccCCCCCCCCCCCCCCccCCCCCCCCccccCCCCCCCCccccccccCCCCCCCCh
Q psy15432 325 AYLWMFRMNKSAELKSVIDKFLAEMRVSSPNETPGGQGHLSSCETPGGQGHLSFSETPGGQGHLTGNQSSLLMGPHFEID 404 (1255)
Q Consensus 325 a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~ 404 (1255)
+..+ +++ +
T Consensus 299 ~~~l-----------------------------------------------------------------------gi~-~ 306 (460)
T PRK01390 299 ARAL-----------------------------------------------------------------------GLS-P 306 (460)
T ss_pred HHHc-----------------------------------------------------------------------CCC-H
Confidence 8764 566 8
Q ss_pred HHHHHHHhcCC-CCCceEEEEe-cCcEEEEc-cCCCHHHHHHHHHHHHhhhhcccccCccCCCCCCCCCccCCCCCccEE
Q psy15432 405 PKTYRGIKACV-WPGRVQVIRK-NNFKYFLD-GAHTTDSIELCAKWFLRKSEAEASSSRSVSSCPLDPTQSKSSNVIQRI 481 (1255)
Q Consensus 405 e~i~~gL~~~~-~pGR~e~v~~-~~~~vilD-gAHnp~si~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 481 (1255)
+.+.+||++++ ||||||++.. ++..||+| |||||+|++++++.++ +++
T Consensus 307 ~~i~~gL~~~~~~~gR~e~i~~~~g~~vIdDs~ahNp~s~~~aL~~~~-----------------------------~i~ 357 (460)
T PRK01390 307 EEIAAGLASFPGLAHRMEQVGRRGGVLFVNDSKATNADAAAKALSSFD-----------------------------RIY 357 (460)
T ss_pred HHHHHHHHhCCCCCCceEEEeeeCCcEEEEcCCCCCHHHHHHHHHhCC-----------------------------CeE
Confidence 99999999996 9999999986 56677889 9999999998776431 578
Q ss_pred EEEecCCCCChhhhhHHhhccCCCcEEEEc
Q psy15432 482 LVFNVTGERDPTKLLSPLLQSNQFEYILVT 511 (1255)
Q Consensus 482 lVfg~~~drD~~~ll~~L~~~~~~d~vi~t 511 (1255)
+|+|...+++.-+.|..+ . ..++.++++
T Consensus 358 ~I~G~~d~~~~~~~L~~~-~-~~v~~v~~~ 385 (460)
T PRK01390 358 WIAGGKPKEGGIESLAPF-F-PRIAKAYLI 385 (460)
T ss_pred EEecCccCCCCHHHHHHH-H-HhhCEEEEE
Confidence 899854433434444443 1 345666664
|
|
| >PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-31 Score=319.32 Aligned_cols=248 Identities=15% Similarity=0.210 Sum_probs=186.0
Q ss_pred cEEEEcCCCChhHHHHHHHHHHHHCCCCeEEEcCCcccccceeEEeCCeecChhhhhhHHHHHHHHHHhhhhccCCcchH
Q psy15432 109 NVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTKYFWTVYNALHAKRKHAEDMPAY 188 (1255)
Q Consensus 109 ~vIhVtGTnGKgST~a~l~sIL~~~G~k~Gl~tSPhL~~~rERI~InG~~is~~~ft~~~~~v~~~l~~~~~~~~~~p~~ 188 (1255)
++|+||||||||||++|+++||+++|+++.+-++- |.|.
T Consensus 109 ~~I~VTGT~GKTTTt~li~~iL~~~g~~~~~ggni------------g~p~----------------------------- 147 (448)
T PRK03803 109 PVIAITGSNGKSTVTTLVGEMAKAAGKRVAVGGNI------------GTPA----------------------------- 147 (448)
T ss_pred CEEEEECCCcHHHHHHHHHHHHHhcCCCeEEecCc------------CHHH-----------------------------
Confidence 79999999999999999999999999976654431 1111
Q ss_pred HHHHHHHhhhhhhccCCCEEEEeeccCCccccccccCCccEEEEcCCCcchhhhcCCCHHHHHHHHHcccCCCceeeecc
Q psy15432 189 FKFLTVMSFYVFVKEKPDAVIMEVGIGGRYDNTNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIMKPNCIAVTSA 268 (1255)
Q Consensus 189 Fe~Lt~~A~~~F~~~~vD~aVlEvG~GGr~D~tnii~~P~v~vITnIg~DHld~lG~Tle~Ia~~KagI~k~g~~~v~~~ 268 (1255)
+.. ...+.|++|+|+|+.. +|.|+.+ +|+++|||||+.||+++|| |+|+|+.+|++|++++.++|++.
T Consensus 148 ---~~~------~~~~~~~~V~E~ss~~-l~~~~~~-~P~iaVITNI~~DHld~~g-s~e~~~~~K~~i~~~~~~~V~n~ 215 (448)
T PRK03803 148 ---LDL------LSDDPELYVLELSSFQ-LETTHSL-NAEVATVLNISEDHMDRYS-DLEAYHQAKHRIYRGAKQVVFNR 215 (448)
T ss_pred ---HHH------hcCCCCEEEEEcChhh-hCcCccc-CccEEEEecCChhHcccCC-CHHHHHHHHHHHHhCCCeEEEeC
Confidence 001 2235799999999875 3788888 6999999999999999999 89999999999999888888877
Q ss_pred CCCchHHHHHHHhhhccCceEEEcC------------CcceeeecCc-----ccccCCCchhHHhhHHHHHHHHHHHHHh
Q psy15432 269 NQRGPCKQILLETSRALNCVLLEAP------------SILNYRWRGQ-----PLDEDWKSTVQSINISLAIQLAYLWMFR 331 (1255)
Q Consensus 269 ~q~~e~~~vl~~~a~~~~~~l~~~~------------~~~~~~~~~~-----~i~l~l~G~~q~~Na~lAia~a~~~l~~ 331 (1255)
+++....+.... ..+..+... ....+.+.+. .+.++++|.||++|+++|++++..+
T Consensus 216 -dd~~~~~~~~~~---~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~Hn~~NalaAia~a~~l--- 288 (448)
T PRK03803 216 -DDALTRPLVPDN---QPCLSFGLNAPDFDEWGLREGDGETYLAHGFERLMPVRELKLRGSHNLANALAALALGEAA--- 288 (448)
T ss_pred -CCHHHHHHhhcC---CcEEEEeCCCCCcCceEEEecCCeEEEEeCCceEEehhccCCCCHHHHHHHHHHHHHHHHc---
Confidence 555554433211 111112111 0001111111 2568899999999999999988765
Q ss_pred hccchhhhhHHHHhhhhhccCCCCCCCCCCCCCCccCCCCCCCCccccCCCCCCCCccccccccCCCCCCCChHHHHHHH
Q psy15432 332 MNKSAELKSVIDKFLAEMRVSSPNETPGGQGHLSSCETPGGQGHLSFSETPGGQGHLTGNQSSLLMGPHFEIDPKTYRGI 411 (1255)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~e~i~~gL 411 (1255)
+++ ++.|.++|
T Consensus 289 --------------------------------------------------------------------gi~-~~~i~~~L 299 (448)
T PRK03803 289 --------------------------------------------------------------------GLP-KEAMLEVL 299 (448)
T ss_pred --------------------------------------------------------------------CCC-HHHHHHHH
Confidence 567 89999999
Q ss_pred hcCC-CCCceEEEEe-cCcEEEEc-cCCCHHHHHHHHHHHHhhhhcccccCccCCCCCCCCCccCCCCCccEEEEEec-C
Q psy15432 412 KACV-WPGRVQVIRK-NNFKYFLD-GAHTTDSIELCAKWFLRKSEAEASSSRSVSSCPLDPTQSKSSNVIQRILVFNV-T 487 (1255)
Q Consensus 412 ~~~~-~pGR~e~v~~-~~~~vilD-gAHnp~si~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilVfg~-~ 487 (1255)
++|. ||||||++.. +++.||+| +||||+|+.++++.+..... .++++|+|. .
T Consensus 300 ~~f~g~~~R~e~v~~~~gv~~idDs~atN~~a~~~al~~l~~~~~------------------------~~iilI~Gg~~ 355 (448)
T PRK03803 300 RTFTGLPHRCEWVREVAGVDYYNDSKGTNVGATVAAIEGLGAHIQ------------------------GKLVLIAGGDG 355 (448)
T ss_pred hhCCCCCCceEEEEEeCCeEEEEcCCcCCHHHHHHHHHhhhhcCC------------------------CCEEEEECCCC
Confidence 9998 9999999975 46778888 59999999999998854211 168999996 4
Q ss_pred CCCChhhhhHHhhccCCCcEEEEc
Q psy15432 488 GERDPTKLLSPLLQSNQFEYILVT 511 (1255)
Q Consensus 488 ~drD~~~ll~~L~~~~~~d~vi~t 511 (1255)
.++|+..+...+ ...++.++++
T Consensus 356 k~~d~~~l~~~l--~~~~~~vil~ 377 (448)
T PRK03803 356 KGADFSPLREPV--AKYVRAVVLI 377 (448)
T ss_pred CCCCHHHHHHHH--HhhCCEEEEE
Confidence 778999887777 3447778775
|
|
| >PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-32 Score=322.79 Aligned_cols=252 Identities=19% Similarity=0.180 Sum_probs=188.9
Q ss_pred CccEEEEcCCCChhHHHHHHHHHHHHCCCCeEEEcCCcccccceeEEeCCeecChhhhhhHHHHHHHHHHhhhhccCCcc
Q psy15432 107 KLNVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTKYFWTVYNALHAKRKHAEDMP 186 (1255)
Q Consensus 107 ~l~vIhVtGTnGKgST~a~l~sIL~~~G~k~Gl~tSPhL~~~rERI~InG~~is~~~ft~~~~~v~~~l~~~~~~~~~~p 186 (1255)
+.++|+||||||||||++|+.+||+.+|++++..++ | |.|++...
T Consensus 108 ~~~~I~VTGT~GKTTTt~ml~~iL~~~g~~~~~~gn---------i---G~~~~~~~----------------------- 152 (459)
T PRK02705 108 HIPWVGITGTNGKTTVTALLAHILQAAGLNAPACGN---------I---GYAACELA----------------------- 152 (459)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHHHcCCCeEEecc---------c---ChhHHHHH-----------------------
Confidence 347999999999999999999999999988765332 1 33322100
Q ss_pred hHHHHHHHHhhhhhhccCCCEEEEeeccCCccccccccCCccEEEEcCCCcchhhhcCCCHHHHHHHHHcccCCCceeee
Q psy15432 187 AYFKFLTVMSFYVFVKEKPDAVIMEVGIGGRYDNTNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIMKPNCIAVT 266 (1255)
Q Consensus 187 ~~Fe~Lt~~A~~~F~~~~vD~aVlEvG~GGr~D~tnii~~P~v~vITnIg~DHld~lG~Tle~Ia~~KagI~k~g~~~v~ 266 (1255)
.+.. ....+.|++|+|+|+ +.+|.++.+ +|+++|||||+.||+++|| |+|+|+.+|++|++++.++|+
T Consensus 153 ----~~~~-----~~~~~~d~~VlE~~s-~~l~~~~~~-~p~iaVITNI~~DHld~~g-t~e~~~~~K~~i~~~~~~~Vl 220 (459)
T PRK02705 153 ----LLRS-----GKAQKPDWIVAELSS-YQIESSPEL-APKIGIWTTFTPDHLERHG-TLENYFAIKASLLERSEIRIL 220 (459)
T ss_pred ----hhhh-----ccCCCCCEEEEEccc-cccccCccc-CCCEEEEecCChhhhcccC-CHHHHHHHHHHHhccCCEEEE
Confidence 0000 134578999999999 578888876 7999999999999999999 999999999999999988888
Q ss_pred ccCCCchHHHHHHHhhhccCceEEEcCCc------c--ee-----ee-cCc----ccccCCCchhHHhhHHHHHHHHHHH
Q psy15432 267 SANQRGPCKQILLETSRALNCVLLEAPSI------L--NY-----RW-RGQ----PLDEDWKSTVQSINISLAIQLAYLW 328 (1255)
Q Consensus 267 ~~~q~~e~~~vl~~~a~~~~~~l~~~~~~------~--~~-----~~-~~~----~i~l~l~G~~q~~Na~lAia~a~~~ 328 (1255)
+. +++++..+..+.. ....+..... . .+ .+ .+. ...++++|.||..|+++|++++..+
T Consensus 221 n~-dd~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~hn~~NalaAia~a~~l 296 (459)
T PRK02705 221 NG-DDPYLRQHRSSWP---KGYWTSTQGKASLLGQADGWILEEGWVVERGEPLFPLSALKMPGAHNLQNLLLAVAAARLA 296 (459)
T ss_pred EC-CCHHHHHHHhcCC---ceEEeccCCccccccccceeEecCCEEEECCcceeeHHHcCCccHHHHHHHHHHHHHHHHc
Confidence 87 6665555433211 1111211100 0 00 01 011 1357899999999999999988764
Q ss_pred HHhhccchhhhhHHHHhhhhhccCCCCCCCCCCCCCCccCCCCCCCCccccCCCCCCCCccccccccCCCCCCCChHHHH
Q psy15432 329 MFRMNKSAELKSVIDKFLAEMRVSSPNETPGGQGHLSSCETPGGQGHLSFSETPGGQGHLTGNQSSLLMGPHFEIDPKTY 408 (1255)
Q Consensus 329 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~e~i~ 408 (1255)
+++ ++.+.
T Consensus 297 -----------------------------------------------------------------------gv~-~~~i~ 304 (459)
T PRK02705 297 -----------------------------------------------------------------------GLS-AEAIA 304 (459)
T ss_pred -----------------------------------------------------------------------CCC-HHHHH
Confidence 567 89999
Q ss_pred HHHhcCC-CCCceEEEEe-cCcEEEEc-cCCCHHHHHHHHHHHHhhhhcccccCccCCCCCCCCCccCCCCCccEEEEEe
Q psy15432 409 RGIKACV-WPGRVQVIRK-NNFKYFLD-GAHTTDSIELCAKWFLRKSEAEASSSRSVSSCPLDPTQSKSSNVIQRILVFN 485 (1255)
Q Consensus 409 ~gL~~~~-~pGR~e~v~~-~~~~vilD-gAHnp~si~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilVfg 485 (1255)
++|++|. ||||||++.. +++.||+| |||||+|+.++++++. . ++++|+|
T Consensus 305 ~~L~~f~~~~gR~e~~~~~~~~~ii~Ds~a~N~~s~~~al~~l~-----~-----------------------~~i~IlG 356 (459)
T PRK02705 305 EALRSFPGVPHRLERIGTINGIDFINDSKATNYDAAEVGLKAVP-----G-----------------------PVILIAG 356 (459)
T ss_pred HHHHhCCCCCCceEEEEeeCCcEEEEeCCCCCHHHHHHHHHhCC-----C-----------------------CeEEEec
Confidence 9999997 9999999875 46789999 7999999999998762 1 5788887
Q ss_pred -cCCCCChhhhhHHhhccCCCcEEEEc
Q psy15432 486 -VTGERDPTKLLSPLLQSNQFEYILVT 511 (1255)
Q Consensus 486 -~~~drD~~~ll~~L~~~~~~d~vi~t 511 (1255)
+..++|...+++.+ . ...|.+|++
T Consensus 357 g~~~~~d~~~~~~~l-~-~~~~~vi~~ 381 (459)
T PRK02705 357 GEAKQGDDSAWLKQI-K-AKAAAVLLF 381 (459)
T ss_pred CccCCCCHHHHHHHH-H-hheeEEEEE
Confidence 56689999999888 3 457888887
|
|
| >PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-32 Score=326.66 Aligned_cols=291 Identities=15% Similarity=0.098 Sum_probs=205.6
Q ss_pred ceEEEecCCCCCccHHHHHHHHHHHCCCCeEEEcCcccccccceeeeCCeecChhhhhhHHHHHHHHHHHHhhcCCCCCc
Q psy15432 720 LNVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTKYFWTVYNALHAKRKHAEDMPA 799 (1255)
Q Consensus 720 l~vIhVTGTnGKgST~aml~sILr~~G~rtGl~tSPhL~~~~ERI~InG~pIs~~~f~~~~~~v~~~l~~~~~~~~~~pt 799 (1255)
.++|+||||||||||++|+.+||+..|+++++.++- |.|+.... .
T Consensus 108 ~~vI~ITGS~GKTTt~~~l~~iL~~~g~~~~~~g~i------------g~~~~~~~------------~----------- 152 (450)
T PRK14106 108 APIVAITGTNGKTTTTTLLGEIFKNAGRKTLVAGNI------------GYPLIDAV------------E----------- 152 (450)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHHHcCCCeEEeCcc------------cHHHHHHH------------h-----------
Confidence 489999999999999999999999999877654442 33322100 0
Q ss_pred HHHHHHHHHHHhhhcCCCCEEEEecccCCccccccccCCCcEEEEcCCCchhhhhcCCCHHHHHHHHhccccCC---ceE
Q psy15432 800 YFKFLTVMSFYVFVKEKPDAVIMEVGIGGRYDNTNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIMKPN---CIA 876 (1255)
Q Consensus 800 ~Fe~lT~mAf~~F~~~~vD~aVlEVG~GGr~D~TNvi~~P~VavITnIg~DHl~~LG~TleeIA~~KagI~K~g---~~a 876 (1255)
.....|++|+|+|+.+.-. ..++ +|+++|||||+.||+++|| |+|+|+.+|++||++. ..+
T Consensus 153 -------------~~~~~~~~v~E~~~~~~~~-~~~~-~P~i~VITnI~~dHl~~~g-t~e~ia~~K~~i~~~~~~~~~~ 216 (450)
T PRK14106 153 -------------EYGEDDIIVAEVSSFQLET-IKEF-KPKVGCILNITPDHLDRHK-TMENYIKAKARIFENQRPSDYT 216 (450)
T ss_pred -------------cCCCCCEEEEEcChhhhcc-cccc-CCCEEEEecCCcchhcccC-CHHHHHHHHHHHHhCCCCCCEE
Confidence 1125799999999874322 2334 6999999999999999999 9999999999999754 556
Q ss_pred EEccCCCChhHHHHHHHhhhcCCeEEEcCCcc-----------c--eeccCC------ccccCCCchhHHHHHHHHHHHH
Q psy15432 877 VTSANQRGPCKQILLETSRALNCVLLEAPSIL-----------N--YRWRGQ------PLDEDWKSTVQSINISLAIQLA 937 (1255)
Q Consensus 877 v~~~~qd~~~~~vl~~~A~~~~~~l~~~~~~~-----------~--~~~~~~------~v~l~L~G~hq~~Na~lAiala 937 (1255)
+++. ++ +. +...+.+.+++++.++... . +...+. .+.++++|.||.+|+++|++++
T Consensus 217 vln~-d~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~h~~~Na~aAia~~ 291 (450)
T PRK14106 217 VLNY-DD-PR---TRSLAKKAKARVIFFSRKSLLEEGVFVKNGKIVISLGGKEEEVIDIDEIFIPGEHNLENALAATAAA 291 (450)
T ss_pred EEeC-Cc-HH---HHHHHhhcCceEEEEecCccCcCceEEECCEEEEecCCCcceEEEHHHcCCCCHHHHHHHHHHHHHH
Confidence 7776 33 33 3333444455555544210 0 111111 1367899999999999999988
Q ss_pred HHHHHhhcchhhhhhHHHHHhhhhhcCCCCCCCCCCCCCCcCCCCCCCCCccccCCCCCCCCcccccccccCCCCCCCC-
Q psy15432 938 YLWMFRMNKSAELKSVIDKFLAEMRVSSPNETPGGQGHLSSCETPGGQGHLSFSETPGGQGHLTGNQSSLLMGPHFEID- 1016 (1255)
Q Consensus 938 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~i~- 1016 (1255)
.. +|++
T Consensus 292 ~~-------------------------------------------------------------------------lgi~~ 298 (450)
T PRK14106 292 YL-------------------------------------------------------------------------LGISP 298 (450)
T ss_pred HH-------------------------------------------------------------------------cCCCH
Confidence 75 4566
Q ss_pred HHHHHHHhcCC-CCCcEEEEee-cCcEEEEE-cCcCHHHHHHHHHHHHhhhccccCCCcccCCCCCcEEEEEec-CCCCC
Q psy15432 1017 PKTYRGIKACV-WPGRVQVIRK-NNFKYFLD-GAHTTDSIELCAKWFLRKSEAEANPTQSKSSNVIQRILVFNV-TGERD 1092 (1255)
Q Consensus 1017 ~~i~~gL~~~~-~pGR~E~v~~-~~~~vilD-gAHNP~S~~a~l~~l~~~~~~~~~~~~~~~~~~~~~vlVfg~-~~drD 1092 (1255)
+++.+||+++. ||||||++.. ++..+|+| |||||+|+++++++++ .++++|||. ..+++
T Consensus 299 ~~i~~~L~~~~~~~gR~e~i~~~~~~~vi~D~~ahNP~s~~~~l~~l~-----------------~~~i~v~g~~~~~k~ 361 (450)
T PRK14106 299 DVIANTLKTFKGVEHRIEFVAEINGVKFINDSKGTNPDAAIKALEAYE-----------------TPIVLIAGGYDKGSD 361 (450)
T ss_pred HHHHHHHHhCCCCCcceEEEeeECCEEEEeCCCccCHHHHHHHHHhCC-----------------CCeEEEeCCcCCCCC
Confidence 67999999998 9999999874 45678999 7999999999988762 246788874 47789
Q ss_pred hhhhhhhhhcCCCCcEEEEcCCCCcccccccCCCCCcccccc--cccccCCHHHHHHHHHHHcCCCceEEeecCC
Q psy15432 1093 PTKLLSPLLQSNQFEYILVTPNILTNEIRWRGQPLDEDWKST--VQSINISLAIQLAYLWMFRMNKSAELKRNQS 1165 (1255)
Q Consensus 1093 ~~~ll~~L~~~~~~d~vi~t~~~~~~~~~~~~~~~~~~~~~d--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 1165 (1255)
.+.++..+ . ..+|.+++++..+....... .... ...+..+.++.++.+.....++.++|++|..
T Consensus 362 ~~~~~~~l-~-~~~~~vi~~g~~~~~l~~~~-------~~~~~~~~~~~~~~~~a~~~~~~~~~~~d~ilv~~~~ 427 (450)
T PRK14106 362 FDEFAKAF-K-EKVKKLILLGETAQEIAEAA-------RKYGFDNILFAETLEEAVKKAYEIAKPGDVVLLSPAC 427 (450)
T ss_pred HHHHHHHH-H-hhCCEEEEEcCCHHHHHHHH-------hhCCCCcEEEeCCHHHHHHHHHHhCCCCCEEEEChhh
Confidence 99998888 3 34788888754322111100 0000 1223457888888887777778899999963
|
|
| >PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-31 Score=322.37 Aligned_cols=325 Identities=13% Similarity=0.031 Sum_probs=218.3
Q ss_pred cchHHHHHHHHHhc-CcccccccceEEEecCCCCCccHHHHHHHHHHHCCCCeEEEcCcccccccceeeeCCeecChhhh
Q psy15432 698 VQVDQVVQYLGHLN-ITLDDIKKLNVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKF 776 (1255)
Q Consensus 698 ~~v~~~~~~L~~Lg-~~~~~~~~l~vIhVTGTnGKgST~aml~sILr~~G~rtGl~tSPhL~~~~ERI~InG~pIs~~~f 776 (1255)
+.+.++..++..+- .+. ...++|+||||||||||++|+.+||+.+|.++.+.++. |.|+....
T Consensus 95 ~i~~~~el~~~~~~~~~~---~~~~~IaITGTnGKTTTt~ll~~iL~~~g~~~~~~Gni------------G~p~~~~~- 158 (468)
T PRK04690 95 PFIGGTALWFAEHAARDG---VVPGTVCVTGTKGKSTTTALLAHLLRAAGHRTALVGNI------------GVPLLEVL- 158 (468)
T ss_pred cEEEHHHHHHHHHhhccC---CCCCEEEEeCCCCHHHHHHHHHHHHHhcCCcEEEcCCC------------CcchHHHh-
Confidence 34556666554432 111 12379999999999999999999999999887666553 55542100
Q ss_pred hhHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHHhhhcCCCCEEEEecccCCccccccccCCCcEEEEcCCCchhhhhcC
Q psy15432 777 TKYFWTVYNALHAKRKHAEDMPAYFKFLTVMSFYVFVKEKPDAVIMEVGIGGRYDNTNIIPNTAVVGITSLGYDHTAVLG 856 (1255)
Q Consensus 777 ~~~~~~v~~~l~~~~~~~~~~pt~Fe~lT~mAf~~F~~~~vD~aVlEVG~GGr~D~TNvi~~P~VavITnIg~DHl~~LG 856 (1255)
. ...+.|++|+|+++...-+..-...+|+++|||||+.||+++||
T Consensus 159 -----------~------------------------~~~~~~~~VlE~ss~q~~~~~~~~~~P~iaVItNI~~DHld~~g 203 (468)
T PRK04690 159 -----------A------------------------PQPAPEYWAIELSSYQTGDVARSGARPELAVVLNLFPEHLDWHG 203 (468)
T ss_pred -----------c------------------------cCCCCcEEEEEecCCcccccccccCCCCEEEEcCCCHHHhcccC
Confidence 0 12357999999999844333221137999999999999999999
Q ss_pred CCHHHHHHHHhccccCC--ceEEEccCCCChhHHHHHHHhhhcCCeEEEcCCc------cceeccC-----CccccCCCc
Q psy15432 857 NTIEEITMQKAGIMKPN--CIAVTSANQRGPCKQILLETSRALNCVLLEAPSI------LNYRWRG-----QPLDEDWKS 923 (1255)
Q Consensus 857 ~TleeIA~~KagI~K~g--~~av~~~~qd~~~~~vl~~~A~~~~~~l~~~~~~------~~~~~~~-----~~v~l~L~G 923 (1255)
++++|+.+|++||+.. ..+|++. +++.. ..+. ....+++.++.. ..+.+.+ ..+.++++|
T Consensus 204 -s~e~y~~aK~~i~~~~~~~~~v~n~-dd~~~-~~~~----~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G 276 (468)
T PRK04690 204 -GEARYYRDKLSLVTEGRPRIALLNA-ADPRL-AALQ----LPDSEVVWFNHPDGWHVRGDVVYRGEQALFDTALVPLPG 276 (468)
T ss_pred -CHHHHHHHHHHHHhCCCCCeEEEeC-ccHHH-HHHh----cCCCeEEEeeCCccceecceEEEcCCceEEeeccccCcc
Confidence 9999999999999754 4567776 44332 2221 122344443211 0111111 124678999
Q ss_pred hhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHhhhhhcCCCCCCCCCCCCCCcCCCCCCCCCccccCCCCCCCCcccc
Q psy15432 924 TVQSINISLAIQLAYLWMFRMNKSAELKSVIDKFLAEMRVSSPNETPGGQGHLSSCETPGGQGHLSFSETPGGQGHLTGN 1003 (1255)
Q Consensus 924 ~hq~~Na~lAiala~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n 1003 (1255)
.||..|+++|++++..
T Consensus 277 ~h~~~Na~~A~a~~~~---------------------------------------------------------------- 292 (468)
T PRK04690 277 RHNRGNLCAVLAALEA---------------------------------------------------------------- 292 (468)
T ss_pred HhhHHHHHHHHHHHHH----------------------------------------------------------------
Confidence 9999999999998875
Q ss_pred cccccCCCCCCCC-HHHHHHHhcCC-CCCcEEEEeec-CcEEEEE-cCcCHHHHHHHHHHHHhhhccccCCCcccCCCCC
Q psy15432 1004 QSSLLMGPHFEID-PKTYRGIKACV-WPGRVQVIRKN-NFKYFLD-GAHTTDSIELCAKWFLRKSEAEANPTQSKSSNVI 1079 (1255)
Q Consensus 1004 ~~~~~~~~~~~i~-~~i~~gL~~~~-~pGR~E~v~~~-~~~vilD-gAHNP~S~~a~l~~l~~~~~~~~~~~~~~~~~~~ 1079 (1255)
++++ +.+.+||+++. ||||||++... +..||.| +||||+|++++++.+.. +
T Consensus 293 ---------lgi~~~~i~~~l~~~~~~~gR~e~~~~~~g~~iidDs~ahNp~a~~~al~~~~~----------------~ 347 (468)
T PRK04690 293 ---------LGLDAVALAPAAAGFRPLPNRLQELGSRDGITYVNDSISTTPHASLAALDCFAG----------------R 347 (468)
T ss_pred ---------cCCCHHHHHHHHHhCCCCCCCcEEEEccCCeEEEEeCCCCCHHHHHHHHHhccC----------------C
Confidence 3455 66999999997 99999999864 6666777 59999999998876521 3
Q ss_pred cEEEEEec-CCCCChhhhhhhhhcCCCCcEEEEcCCCCcccccccCCCCCccccc--ccccccCCHHHHHHHHHH--HcC
Q psy15432 1080 QRILVFNV-TGERDPTKLLSPLLQSNQFEYILVTPNILTNEIRWRGQPLDEDWKS--TVQSINISLAIQLAYLWM--FRM 1154 (1255)
Q Consensus 1080 ~~vlVfg~-~~drD~~~ll~~L~~~~~~d~vi~t~~~~~~~~~~~~~~~~~~~~~--d~~~~~~~~~~~~~~~~~--~~~ 1154 (1255)
++++|||. ..++|.+.|++.+ .+...+.+++++.......... ...... .......+.++.++.+.. ...
T Consensus 348 ~i~~i~Gg~~k~kd~~~l~~~l-~~~~~~~v~~~g~~~~r~~~~l----~~~~~~~~~~~~~~~~~~~Av~~A~~~~~~~ 422 (468)
T PRK04690 348 RVALLVGGHDRGLDWTDFAAHM-AQRAPLEIVTMGANGPRIHALL----APLAAAGRFGLHAADDLAHAVRLARTALGAQ 422 (468)
T ss_pred cEEEEEcCCCCCCCHHHHHHHH-HhccCeEEEEeCCCHHHHHHHH----HhcccccCCceEEcCCHHHHHHHHHHHhCCC
Confidence 68899996 5888999999999 4432366776664433322111 000000 011223478888887765 233
Q ss_pred CCceEEeecCCCCCCccccc
Q psy15432 1155 NKSAELKRNQSSLPMGPHFE 1174 (1255)
Q Consensus 1155 ~~~~~l~~~~~~~~~~~~~~ 1174 (1255)
.+.+.|.+++.|++|.+-|+
T Consensus 423 gdvVLlSPa~aSfD~f~~y~ 442 (468)
T PRK04690 423 GGVVLLSPGAPSFGAYRDYV 442 (468)
T ss_pred CCEEEeCccccccccccCHH
Confidence 46788999999999984443
|
|
| >TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-31 Score=318.80 Aligned_cols=298 Identities=17% Similarity=0.175 Sum_probs=209.5
Q ss_pred ceEEEecCCCCCccHHHHHHHHHHHCCCCeEEEcCcccccccceeeeCCeecChhhhhhHHHHHHHHHHHHhhcCCCCCc
Q psy15432 720 LNVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTKYFWTVYNALHAKRKHAEDMPA 799 (1255)
Q Consensus 720 l~vIhVTGTnGKgST~aml~sILr~~G~rtGl~tSPhL~~~~ERI~InG~pIs~~~f~~~~~~v~~~l~~~~~~~~~~pt 799 (1255)
.++|+||||||||||++|+++||+.+|+++.+-++. |.|..
T Consensus 102 ~~~I~VTGT~GKTTTt~li~~iL~~~g~~~~~~gni------------g~~~~--------------------------- 142 (433)
T TIGR01087 102 LPVVAITGTNGKTTTTSLLYHLLKAAGLKAFLGGNI------------GTPAL--------------------------- 142 (433)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHHhcCCCeEEECcc------------CHHHH---------------------------
Confidence 379999999999999999999999999886544321 22200
Q ss_pred HHHHHHHHHHHhhhcCCCCEEEEecccCCccccccccCCCcEEEEcCCCchhhhhcCCCHHHHHHHHhccccC---CceE
Q psy15432 800 YFKFLTVMSFYVFVKEKPDAVIMEVGIGGRYDNTNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIMKP---NCIA 876 (1255)
Q Consensus 800 ~Fe~lT~mAf~~F~~~~vD~aVlEVG~GGr~D~TNvi~~P~VavITnIg~DHl~~LG~TleeIA~~KagI~K~---g~~a 876 (1255)
.++ ...+.|++|+|+|.. .++.++.+ +|+++|||||+.||++++| |+|+|+.+|++|++. ++.+
T Consensus 143 -----~~~-----~~~~~~~~V~E~~~~-~l~~~~~~-~p~iaViTNI~~DHld~~g-s~e~~~~~K~~i~~~~~~~~~~ 209 (433)
T TIGR01087 143 -----EVL-----DQEGAELYVLELSSF-QLETTESL-RPEIALILNISEDHLDWHG-SFEDYVAAKLKIFARQTEGDVA 209 (433)
T ss_pred -----HHH-----hccCCCEEEEEcChh-HhcCCccc-CCCEEEEecCChhHhcccC-CHHHHHHHHHHHHhcCCCCCEE
Confidence 000 114689999999965 45677777 7999999999999999999 999999999999974 4588
Q ss_pred EEccCCCChhHHHHHHHhhhcCCeEEEcCCcc----cee-------ccCCccccCCCchhHHHHHHHHHHHHHHHHHhhc
Q psy15432 877 VTSANQRGPCKQILLETSRALNCVLLEAPSIL----NYR-------WRGQPLDEDWKSTVQSINISLAIQLAYLWMFRMN 945 (1255)
Q Consensus 877 v~~~~qd~~~~~vl~~~A~~~~~~l~~~~~~~----~~~-------~~~~~v~l~L~G~hq~~Na~lAiala~~~l~~~~ 945 (1255)
|++. + ++... ..+...+++++.++... .+. +....+.++++|.||+.|+++|++++..
T Consensus 210 i~n~-d-d~~~~---~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~hn~~Na~aAia~a~~------ 278 (433)
T TIGR01087 210 VLNA-D-DPRFA---RLAQKSKAQVIWFSVEKDAERGLCIRDGGLYLKPNDLEGSLLGLHNAENILAAIALAKS------ 278 (433)
T ss_pred EEEC-C-CHHHH---HhhhhcCceEEEEeCCccCCCceEEECCEEEEeccccccCCCcHHHHHHHHHHHHHHHH------
Confidence 8887 4 33322 22233345555553211 111 1111367899999999999999998875
Q ss_pred chhhhhhHHHHHhhhhhcCCCCCCCCCCCCCCcCCCCCCCCCccccCCCCCCCCcccccccccCCCCCCCC-HHHHHHHh
Q psy15432 946 KSAELKSVIDKFLAEMRVSSPNETPGGQGHLSSCETPGGQGHLSFSETPGGQGHLTGNQSSLLMGPHFEID-PKTYRGIK 1024 (1255)
Q Consensus 946 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~i~-~~i~~gL~ 1024 (1255)
+|++ +.+.+||+
T Consensus 279 -------------------------------------------------------------------lgi~~~~i~~~L~ 291 (433)
T TIGR01087 279 -------------------------------------------------------------------LGLNLEAILEALR 291 (433)
T ss_pred -------------------------------------------------------------------cCCCHHHHHHHHH
Confidence 4566 67999999
Q ss_pred cCC-CCCcEEEEee-cCcEEEEEc-CcCHHHHHHHHHHHHhhhccccCCCcccCCCCCcEEEEEe-cCCCCChhhhhhhh
Q psy15432 1025 ACV-WPGRVQVIRK-NNFKYFLDG-AHTTDSIELCAKWFLRKSEAEANPTQSKSSNVIQRILVFN-VTGERDPTKLLSPL 1100 (1255)
Q Consensus 1025 ~~~-~pGR~E~v~~-~~~~vilDg-AHNP~S~~a~l~~l~~~~~~~~~~~~~~~~~~~~~vlVfg-~~~drD~~~ll~~L 1100 (1255)
+|. ||||||++.. +++++|+|+ ||||+|+.++++.+. .++++||| ...++|.+.+.+.+
T Consensus 292 ~f~g~~~R~e~v~~~~g~~~idD~~atn~~a~~~al~~~~-----------------~~ii~I~Gg~~~~~d~~~~~~~l 354 (433)
T TIGR01087 292 SFKGLPHRLEYVGQKNGVHFYNDSKATNVHATLAALSAFD-----------------NPVILIVGGDDKGADFSPLAPAA 354 (433)
T ss_pred hCCCCCCceEEEEEECCEEEEEcCCCCCHHHHHHHHHhCC-----------------CCEEEEEcCCCCCCCHHHHHHHH
Confidence 998 9999999975 567899995 999999999998762 24788886 55678888888877
Q ss_pred hcCCCCcEEEEcCCCCcccccccCCCCCccccc--ccccccCCHHHHHHHHHHHcCCCc-eEEeecCCCCCCccccc
Q psy15432 1101 LQSNQFEYILVTPNILTNEIRWRGQPLDEDWKS--TVQSINISLAIQLAYLWMFRMNKS-AELKRNQSSLPMGPHFE 1174 (1255)
Q Consensus 1101 ~~~~~~d~vi~t~~~~~~~~~~~~~~~~~~~~~--d~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~ 1174 (1255)
. ...+.+++.+......... ... ....+..+.++.+..+.....+.+ +.+..++.|++|.+-|+
T Consensus 355 -~-~~~~~v~~~G~~~~~l~~~--------~~~~~~~~~~~~~~~~a~~~~~~~~~~gdiVLlspa~as~d~f~~~~ 421 (433)
T TIGR01087 355 -A-GKVKAVLAIGEDAAKIAPL--------LKEAGLSVYLVESLEEAVQAAREVASPGDVVLLSPACASFDQFKSYE 421 (433)
T ss_pred -H-hhCCEEEEECCCHHHHHHH--------HHhCCCcEEEeCCHHHHHHHHHHhcCCCCEEEECccchhhccccCHH
Confidence 3 3356777765433221111 100 011233477887777766555555 45556779999985544
|
|
| >PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-31 Score=319.06 Aligned_cols=302 Identities=15% Similarity=0.110 Sum_probs=207.8
Q ss_pred eEEEecCCCCCccHHHHHHHHHHHCCCCeEEEcCcccccccceeeeCCeecChhhhhhHHHHHHHHHHHHhhcCCCCCcH
Q psy15432 721 NVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTKYFWTVYNALHAKRKHAEDMPAY 800 (1255)
Q Consensus 721 ~vIhVTGTnGKgST~aml~sILr~~G~rtGl~tSPhL~~~~ERI~InG~pIs~~~f~~~~~~v~~~l~~~~~~~~~~pt~ 800 (1255)
++|+||||||||||++|+.+||+.+|++...+.. |..-.... +
T Consensus 108 ~~I~ITGTnGKTTTt~ll~~iL~~~g~~~~~~~g-------------g~~~~~~~----------------------~-- 150 (461)
T PRK00421 108 TSIAVAGTHGKTTTTSLLAHVLAEAGLDPTFLIG-------------GILNAAGT----------------------N-- 150 (461)
T ss_pred cEEEEECCCCHHHHHHHHHHHHHhcCCCCeEEEC-------------ceeccCCc----------------------c--
Confidence 7999999999999999999999999975333211 21100000 0
Q ss_pred HHHHHHHHHHhhhcCCCCEEEEecccCCccccccccCCCcEEEEcCCCchhhhhcCCCHHHHHHHHhccc---cCCceEE
Q psy15432 801 FKFLTVMSFYVFVKEKPDAVIMEVGIGGRYDNTNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIM---KPNCIAV 877 (1255)
Q Consensus 801 Fe~lT~mAf~~F~~~~vD~aVlEVG~GGr~D~TNvi~~P~VavITnIg~DHl~~LG~TleeIA~~KagI~---K~g~~av 877 (1255)
+...+.|++|+|+++... ....+ +|+++|||||+.||+++|| |+|+|+..|..|+ +++..+|
T Consensus 151 -----------~~~~~~~~~V~E~ss~q~-~~~~~--~p~vaViTNI~~DHld~~g-t~e~y~~ak~k~~~~~~~~~~~V 215 (461)
T PRK00421 151 -----------ARLGNSDYFVAEADESDR-SFLKL--HPDIAIVTNIDADHLDYYG-DFEDLKDAFQEFAHNLPFYGALV 215 (461)
T ss_pred -----------cccCCCCEEEEECCCccc-hHhhc--CCCEEEEccCChhhccccC-CHHHHHHHHHHHHhcCCCCCEEE
Confidence 011357999999997733 11222 7999999999999999999 9999998877665 5667888
Q ss_pred EccCCCChhHHHHHHHhhhcCCeEEEcCC--c--------------cceec--cCC---ccccCCCchhHHHHHHHHHHH
Q psy15432 878 TSANQRGPCKQILLETSRALNCVLLEAPS--I--------------LNYRW--RGQ---PLDEDWKSTVQSINISLAIQL 936 (1255)
Q Consensus 878 ~~~~qd~~~~~vl~~~A~~~~~~l~~~~~--~--------------~~~~~--~~~---~v~l~L~G~hq~~Na~lAial 936 (1255)
++. +++....+..+. .++++.++. . ..+.+ .+. .+.++++|.||.+|+++|+++
T Consensus 216 ~n~-dd~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~l~l~G~h~~~N~~aA~a~ 290 (461)
T PRK00421 216 ACG-DDPELRELLPRV----SRPVITYGFSEDADFRAENIRQDGGGTHFDVLRRGEVLGDFTLPLPGRHNVLNALAAIAV 290 (461)
T ss_pred EEC-CCHHHHHHHHhc----CCCEEEecCCCCCcEEEEEEEEcCCceEEEEEECCceEEEEEecCCcHHHHHHHHHHHHH
Confidence 887 555554443321 133333321 0 00110 011 256789999999999999998
Q ss_pred HHHHHHhhcchhhhhhHHHHHhhhhhcCCCCCCCCCCCCCCcCCCCCCCCCccccCCCCCCCCcccccccccCCCCCCCC
Q psy15432 937 AYLWMFRMNKSAELKSVIDKFLAEMRVSSPNETPGGQGHLSSCETPGGQGHLSFSETPGGQGHLTGNQSSLLMGPHFEID 1016 (1255)
Q Consensus 937 a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~i~ 1016 (1255)
+.. ++++
T Consensus 291 ~~~-------------------------------------------------------------------------lgv~ 297 (461)
T PRK00421 291 ALE-------------------------------------------------------------------------LGID 297 (461)
T ss_pred HHH-------------------------------------------------------------------------cCCC
Confidence 875 4566
Q ss_pred -HHHHHHHhcCC-CCCcEEEEeec-CcEEEEEcCcCHHHHHHHHHHHHhhhccccCCCcccCCCCCcEEEEEe---cCCC
Q psy15432 1017 -PKTYRGIKACV-WPGRVQVIRKN-NFKYFLDGAHTTDSIELCAKWFLRKSEAEANPTQSKSSNVIQRILVFN---VTGE 1090 (1255)
Q Consensus 1017 -~~i~~gL~~~~-~pGR~E~v~~~-~~~vilDgAHNP~S~~a~l~~l~~~~~~~~~~~~~~~~~~~~~vlVfg---~~~d 1090 (1255)
+++.+||++|+ ||||||++... ++.||+||||||++++++++.++.... .+++++||| .+++
T Consensus 298 ~~~i~~~l~~f~~~~~R~e~~~~~~g~~~i~D~aHnp~~~~a~~~al~~~~~------------~~~i~~v~gp~~~~r~ 365 (461)
T PRK00421 298 DEAIREALATFKGVKRRFEEKGEVGGVVLIDDYAHHPTEIKATLKAARQGYP------------DKRIVAVFQPHRYSRT 365 (461)
T ss_pred HHHHHHHHHhCCCCCcccEEEEecCCcEEEEeCCCCHHHHHHHHHHHHhhCC------------CCeEEEEECCCCCccH
Confidence 67999999997 99999999865 678999999999999999999987431 146789998 6777
Q ss_pred CChhh-hhhhhhcCCCCcEEEEcCCCCcccccccCCCC---Ccccccc--cccccCCHHHHHHHHHHHcCCCceEEeecC
Q psy15432 1091 RDPTK-LLSPLLQSNQFEYILVTPNILTNEIRWRGQPL---DEDWKST--VQSINISLAIQLAYLWMFRMNKSAELKRNQ 1164 (1255)
Q Consensus 1091 rD~~~-ll~~L~~~~~~d~vi~t~~~~~~~~~~~~~~~---~~~~~~d--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 1164 (1255)
||... |.+.+ ..+|.+++++..+..+....+.+. ...+... ......+.++.++.+.....+.+++|+-|.
T Consensus 366 kd~~~~~~~~l---~~~d~vi~~~~~~~~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~a~~~a~~gD~vlv~G~ 442 (461)
T PRK00421 366 RDLLDEFAEAL---SDADEVILLDIYAAGEEPIGGVDSEDLARKIKRGHRDPIFVPDLEDLAELLAEVLKPGDLVLTMGA 442 (461)
T ss_pred HHHHHHHHHHH---HHCCEEEEcCccCCCCCCCCCCCHHHHHHHHhccCCceEEeCCHHHHHHHHHHhcCCCCEEEEECC
Confidence 77554 55544 347899998776644432221111 1112111 112345788888888888888899999888
Q ss_pred CCC
Q psy15432 1165 SSL 1167 (1255)
Q Consensus 1165 ~~~ 1167 (1255)
+++
T Consensus 443 g~~ 445 (461)
T PRK00421 443 GDI 445 (461)
T ss_pred CCH
Confidence 763
|
|
| >PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=3e-31 Score=317.38 Aligned_cols=297 Identities=15% Similarity=0.115 Sum_probs=208.7
Q ss_pred ceEEEecCCCCCccHHHHHHHHHHHCCCCeEEEcCcccccccceeeeCCeecChhhhhhHHHHHHHHHHHHhhcCCCCCc
Q psy15432 720 LNVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTKYFWTVYNALHAKRKHAEDMPA 799 (1255)
Q Consensus 720 l~vIhVTGTnGKgST~aml~sILr~~G~rtGl~tSPhL~~~~ERI~InG~pIs~~~f~~~~~~v~~~l~~~~~~~~~~pt 799 (1255)
.++|+||||||||||++|+.+||+.+|+++.+.++. |.|++... .
T Consensus 108 ~~~I~VTGT~GKTTTt~ll~~iL~~~g~~~~~~Gni------------g~p~~~~~------------~----------- 152 (447)
T PRK02472 108 APIIGITGSNGKTTTTTLIGEMLKAGGQHALLAGNI------------GYPASEVA------------Q----------- 152 (447)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHHHCCCCeEEEccc------------ChhhHHHH------------h-----------
Confidence 379999999999999999999999999877555432 44543100 0
Q ss_pred HHHHHHHHHHHhhhcCCCCEEEEecccCCccccccccCCCcEEEEcCCCchhhhhcCCCHHHHHHHHhccccCC---ceE
Q psy15432 800 YFKFLTVMSFYVFVKEKPDAVIMEVGIGGRYDNTNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIMKPN---CIA 876 (1255)
Q Consensus 800 ~Fe~lT~mAf~~F~~~~vD~aVlEVG~GGr~D~TNvi~~P~VavITnIg~DHl~~LG~TleeIA~~KagI~K~g---~~a 876 (1255)
...+.|++|+|+++.+.. .++.+ +|+++|||||+.||+++|| |+|+|+.+|++|+++. ..+
T Consensus 153 -------------~~~~~~~~V~E~ss~~~~-~~~~~-~P~iaVITnI~~DHld~~g-t~e~i~~~K~~i~~~~~~~~~~ 216 (447)
T PRK02472 153 -------------KATADDTLVMELSSFQLM-GIETF-RPHIAVITNIYPAHLDYHG-TFENYVAAKWNIQKNQTEDDYL 216 (447)
T ss_pred -------------cCCCCCEEEEEcCchhhC-ccccc-CCCEEEEeccChhhhcccC-CHHHHHHHHHHHHhcCCCCCEE
Confidence 123569999999988654 35566 7999999999999999999 9999999999999864 458
Q ss_pred EEccCCCChhHHHHHHHhhhcCCeEEEcCCcc-----------ceeccCC----ccccCCCchhHHHHHHHHHHHHHHHH
Q psy15432 877 VTSANQRGPCKQILLETSRALNCVLLEAPSIL-----------NYRWRGQ----PLDEDWKSTVQSINISLAIQLAYLWM 941 (1255)
Q Consensus 877 v~~~~qd~~~~~vl~~~A~~~~~~l~~~~~~~-----------~~~~~~~----~v~l~L~G~hq~~Na~lAiala~~~l 941 (1255)
|++. +++...+. +.+..++++.++... .+.+.+. .+.++++|.||++|+++|++++..
T Consensus 217 v~n~-dd~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~hn~~Na~aAia~~~~-- 289 (447)
T PRK02472 217 VINF-DQEEVKEL----AKQTKATVVPFSTTEKVEDGAYIKDGALYFKGEKIMAADDIVLPGSHNLENALAAIAAAKL-- 289 (447)
T ss_pred EEeC-CcHHHHHH----HhhcCceEEEeecCCCCcCceEEECCEEEECCceEEehhhcCCCCHHHHHHHHHHHHHHHH--
Confidence 8887 44444332 222223333332100 0111111 126789999999999999998875
Q ss_pred HhhcchhhhhhHHHHHhhhhhcCCCCCCCCCCCCCCcCCCCCCCCCccccCCCCCCCCcccccccccCCCCCCCC-HHHH
Q psy15432 942 FRMNKSAELKSVIDKFLAEMRVSSPNETPGGQGHLSSCETPGGQGHLSFSETPGGQGHLTGNQSSLLMGPHFEID-PKTY 1020 (1255)
Q Consensus 942 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~i~-~~i~ 1020 (1255)
+|++ +++.
T Consensus 290 -----------------------------------------------------------------------lgi~~~~i~ 298 (447)
T PRK02472 290 -----------------------------------------------------------------------LGVSNEAIR 298 (447)
T ss_pred -----------------------------------------------------------------------cCCCHHHHH
Confidence 4566 6799
Q ss_pred HHHhcCC-CCCcEEEEee-cCcEEEEEc-CcCHHHHHHHHHHHHhhhccccCCCcccCCCCCcEEEEEecCC-CCChhhh
Q psy15432 1021 RGIKACV-WPGRVQVIRK-NNFKYFLDG-AHTTDSIELCAKWFLRKSEAEANPTQSKSSNVIQRILVFNVTG-ERDPTKL 1096 (1255)
Q Consensus 1021 ~gL~~~~-~pGR~E~v~~-~~~~vilDg-AHNP~S~~a~l~~l~~~~~~~~~~~~~~~~~~~~~vlVfg~~~-drD~~~l 1096 (1255)
++|+++. ||||||++.. ++..||+|+ ||||+|+..+++.+. +++++|||... +++++.+
T Consensus 299 ~~L~~f~~~~~R~e~~~~~~g~~vi~D~~a~N~~s~~~al~~~~-----------------~~ii~I~g~~~~~~~~~~l 361 (447)
T PRK02472 299 EVLSTFSGVKHRLQYVGTIDGRKFYNDSKATNILATQKALSGFN-----------------QPVVLLAGGLDRGNEFDEL 361 (447)
T ss_pred HHHHhCCCCCCcceEEEEECCeEEEECCCCCCHHHHHHHHHhCC-----------------CCEEEEECCCCCCCCHHHH
Confidence 9999998 9999999974 467899995 999999988887541 35789999764 7899999
Q ss_pred hhhhhcCCCCcEEEEcCCCCcccccccCCCCCcccccccccccCCHHHHHHHHHHHcCCCceEEee-cCCCCCCcc
Q psy15432 1097 LSPLLQSNQFEYILVTPNILTNEIRWRGQPLDEDWKSTVQSINISLAIQLAYLWMFRMNKSAELKR-NQSSLPMGP 1171 (1255)
Q Consensus 1097 l~~L~~~~~~d~vi~t~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~ 1171 (1255)
++.+ .. +|.+++.+........... . .+....+..+.++.+..+.....+++++|+. ++.|++|-+
T Consensus 362 ~~~l-~~--~~~v~~~G~~~~~l~~~~~-----~-~~~~~~~~~~~~~a~~~~~~~~~~~d~VLls~a~~s~d~f~ 428 (447)
T PRK02472 362 VPYL-KN--VKAMVVFGETAEKLARAAE-----K-AGITVVEADNVEDAVPKAYELSEPGDVILLSPACASWDQYK 428 (447)
T ss_pred HHHH-hc--cCEEEEECCCHHHHHHHHH-----h-CCCceEEcCCHHHHHHHHHHhCCCCCEEEeCcccccccccc
Confidence 9888 33 7888887543322111100 0 0011234457888887776666665555554 668888873
|
|
| >PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=5.5e-31 Score=315.37 Aligned_cols=248 Identities=15% Similarity=0.177 Sum_probs=183.5
Q ss_pred ccEEEEcCCCChhHHHHHHHHHHHHCCCCeEEEcCCcccccceeEEeCCeecChhhhhhHHHHHHHHHHhhhhccCCcch
Q psy15432 108 LNVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTKYFWTVYNALHAKRKHAEDMPA 187 (1255)
Q Consensus 108 l~vIhVtGTnGKgST~a~l~sIL~~~G~k~Gl~tSPhL~~~rERI~InG~~is~~~ft~~~~~v~~~l~~~~~~~~~~p~ 187 (1255)
.++|+||||||||||+.|+.+||+.+|.++.+.++- |.|+.. .
T Consensus 110 ~~~I~ITGT~GKTTTt~li~~iL~~~g~~~~~~Gni------------G~~~~~-----~-------------------- 152 (445)
T PRK04308 110 DKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNI------------GTPVLE-----A-------------------- 152 (445)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHHHcCCCeEEeCCc------------cHHHHH-----H--------------------
Confidence 479999999999999999999999999886555431 222210 0
Q ss_pred HHHHHHHHhhhhhhccCCCEEEEeeccCCccccccccCCccEEEEcCCCcchhhhcCCCHHHHHHHHHcccCCCceeeec
Q psy15432 188 YFKFLTVMSFYVFVKEKPDAVIMEVGIGGRYDNTNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIMKPNCIAVTS 267 (1255)
Q Consensus 188 ~Fe~Lt~~A~~~F~~~~vD~aVlEvG~GGr~D~tnii~~P~v~vITnIg~DHld~lG~Tle~Ia~~KagI~k~g~~~v~~ 267 (1255)
+... ..+++|++|+|+|+ +++|.++.+ +|+++|||||+.||+++|| |+|+|+.+|++|++++..+|++
T Consensus 153 ----~~~~-----~~~~~d~~VlE~~~-~~l~~~~~~-~p~iaviTNI~~DHld~~~-t~e~~~~~K~~i~~~~~~~i~n 220 (445)
T PRK04308 153 ----ELQR-----EGKKADVWVLELSS-FQLENTESL-RPTAATVLNISEDHLDRYD-DLLDYAHTKAKIFRGDGVQVLN 220 (445)
T ss_pred ----HHhh-----cCCCCcEEEEEeCh-HHhCcCccc-CCCEEEEecCChHHhcccC-CHHHHHHHHHHHhcCCCEEEEe
Confidence 0000 13478999999996 567889887 6999999999999999999 9999999999999998888887
Q ss_pred cCCCchHHHHHHHhhhccCceEEEcC--Ccce---------eeecCc----ccccCCCchhHHhhHHHHHHHHHHHHHhh
Q psy15432 268 ANQRGPCKQILLETSRALNCVLLEAP--SILN---------YRWRGQ----PLDEDWKSTVQSINISLAIQLAYLWMFRM 332 (1255)
Q Consensus 268 ~~q~~e~~~vl~~~a~~~~~~l~~~~--~~~~---------~~~~~~----~i~l~l~G~~q~~Na~lAia~a~~~l~~~ 332 (1255)
. +++.... +.+ .+..++.++ ...+ +.+.+. .++++++|.||++|+++|++++..+
T Consensus 221 ~-dd~~~~~-~~~----~~~~v~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~l~G~hn~~NalaAia~a~~l---- 290 (445)
T PRK04308 221 A-DDAFCRA-MKR----AGREVKWFSLEHEADFWLERETGRLKQGNEDLIATQDIPLQGLHNAANVMAAVALCEAV---- 290 (445)
T ss_pred C-CcHHHHH-Hhh----cCCcEEEecCCCCCceeEeccCCEEEEcCceeeehhccCCcChhhHHHHHHHHHHHHHc----
Confidence 6 4443332 222 122222221 1011 111111 2568999999999999999988764
Q ss_pred ccchhhhhHHHHhhhhhccCCCCCCCCCCCCCCccCCCCCCCCccccCCCCCCCCccccccccCCCCCCCChHHHHHHHh
Q psy15432 333 NKSAELKSVIDKFLAEMRVSSPNETPGGQGHLSSCETPGGQGHLSFSETPGGQGHLTGNQSSLLMGPHFEIDPKTYRGIK 412 (1255)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~e~i~~gL~ 412 (1255)
+++ ++++.++|+
T Consensus 291 -------------------------------------------------------------------gi~-~~~i~~~L~ 302 (445)
T PRK04308 291 -------------------------------------------------------------------GLP-REALLEHVK 302 (445)
T ss_pred -------------------------------------------------------------------CCC-HHHHHHHHh
Confidence 566 899999999
Q ss_pred cCC-CCCceEEEEe-cCcEEEEcc-CCCHHHHHHHHHHHHhhhhcccccCccCCCCCCCCCccCCCCCccEEEEEecC-C
Q psy15432 413 ACV-WPGRVQVIRK-NNFKYFLDG-AHTTDSIELCAKWFLRKSEAEASSSRSVSSCPLDPTQSKSSNVIQRILVFNVT-G 488 (1255)
Q Consensus 413 ~~~-~pGR~e~v~~-~~~~vilDg-AHnp~si~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilVfg~~-~ 488 (1255)
+|+ ||||||++.. ++..||.|+ +|||+|+.++++.+. . ++++|||.+ .
T Consensus 303 ~f~~~~~R~e~~~~~~~~~~iDDs~~~n~~s~~~al~~~~-----~-----------------------~~i~IlGg~~~ 354 (445)
T PRK04308 303 TFQGLPHRVEKIGEKNGVVFIDDSKGTNVGATAAAIAGLQ-----N-----------------------PLFVILGGMGK 354 (445)
T ss_pred hCCCCCCceEEEEeeCCeEEEEcCCCCCHHHHHHHHHhCC-----C-----------------------CEEEEeCCCCC
Confidence 998 9999999976 455666664 899999999887651 1 589999744 7
Q ss_pred CCChhhhhHHhhccCCCcEEEEcC
Q psy15432 489 ERDPTKLLSPLLQSNQFEYILVTP 512 (1255)
Q Consensus 489 drD~~~ll~~L~~~~~~d~vi~t~ 512 (1255)
++|+..+...+ ...+|.|+++.
T Consensus 355 ~~~~~~~~~~l--~~~~~~vil~G 376 (445)
T PRK04308 355 GQDFTPLRDAL--AGKAKGVFLIG 376 (445)
T ss_pred CCCHHHHHHHH--HHhCcEEEEEC
Confidence 88998887766 34578888764
|
|
| >PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.4e-30 Score=316.23 Aligned_cols=270 Identities=16% Similarity=0.200 Sum_probs=193.1
Q ss_pred chHHHHHHHHHhcCCccCCCCccEEEEcCCCChhHHHHHHHHHHHHCCCCeEEEcCCcccccceeEEeCCeecChhhhhh
Q psy15432 87 QVDQVVQYLGHLNITLDDIKKLNVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTK 166 (1255)
Q Consensus 87 ~l~~~~~~L~~Lg~~~~~~~~l~vIhVtGTnGKgST~a~l~sIL~~~G~k~Gl~tSPhL~~~rERI~InG~~is~~~ft~ 166 (1255)
.++.+.+.++.|+.+.+ +.++|+||||||||||++|+++||+.+|+++++.++- ....+..
T Consensus 103 ~~e~~~~~~~~l~~~~~---~~~~I~VTGTnGKTTTt~ml~~iL~~~g~~~~~~Gni----------------~~~~~~~ 163 (498)
T PRK02006 103 EIELFAQALAALGASGY---APKVLAITGTNGKTTTTALTGLLCERAGKKVAVAGNI----------------SPAALDK 163 (498)
T ss_pred HHHHHHHHHhhhccccC---CCCEEEEECCCcHHHHHHHHHHHHHHcCCCEEEECCC----------------CHHHHHH
Confidence 45556777778877653 3489999999999999999999999999998874321 1111000
Q ss_pred HHHHHHHHHHhhhhccCCcchHHHHHHHHhhhhhhccC--CCEEEEeeccCCccccccccCCccEEEEcCCCcchhhhcC
Q psy15432 167 YFWTVYNALHAKRKHAEDMPAYFKFLTVMSFYVFVKEK--PDAVIMEVGIGGRYDNTNIIPNTAVVGITSLGYDHTAVLG 244 (1255)
Q Consensus 167 ~~~~v~~~l~~~~~~~~~~p~~Fe~Lt~~A~~~F~~~~--vD~aVlEvG~GGr~D~tnii~~P~v~vITnIg~DHld~lG 244 (1255)
+... ...+ .|++|+|+++.+. +.++.+ +|+++|||||+.||+++||
T Consensus 164 ------------------------~~~~------~~~~~~~~~~V~E~ss~~l-~~~~~~-~p~iaviTNI~~DHld~~g 211 (498)
T PRK02006 164 ------------------------LMEA------IDAGALPDVWVLELSSFQL-ETTHTL-APDAATVLNITQDHLDWHG 211 (498)
T ss_pred ------------------------HHHh------hccCCCCcEEEEEccHHHh-Cccccc-CCCEEEEcCCChhhhcccC
Confidence 0000 1222 4899999998754 556665 7999999999999999999
Q ss_pred CCHHHHHHHHHcccCCCceeeeccCCCchHHHHHHHhhhccCceEEEcCCc-----------c--eeeec--C-------
Q psy15432 245 NTIEEITMQKAGIMKPNCIAVTSANQRGPCKQILLETSRALNCVLLEAPSI-----------L--NYRWR--G------- 302 (1255)
Q Consensus 245 ~Tle~Ia~~KagI~k~g~~~v~~~~q~~e~~~vl~~~a~~~~~~l~~~~~~-----------~--~~~~~--~------- 302 (1255)
|+|+|+.+|++|++++..+|++. +++.......+.+.. .+..+..... . .+.+. .
T Consensus 212 -s~e~y~~aK~~i~~~~~~~Vln~-dd~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (498)
T PRK02006 212 -SMAAYAAAKARIFGPRTVRVLNR-DDARVMAMAPPGGAA-DAVTFGLDEPAADGDYGLLRDNGMAWLVEAEDRDAADPA 288 (498)
T ss_pred -CHHHHHHHHHHHcCCCCEEEEeC-CCHHHHHHhhccCCc-cEEEEeCCCccccccceEEecCCeEEEEecCcccccccc
Confidence 89999999999999888888887 555554443322111 1112221100 0 00000 0
Q ss_pred --------------------c-ccccCCCchhHHhhHHHHHHHHHHHHHhhccchhhhhHHHHhhhhhccCCCCCCCCCC
Q psy15432 303 --------------------Q-PLDEDWKSTVQSINISLAIQLAYLWMFRMNKSAELKSVIDKFLAEMRVSSPNETPGGQ 361 (1255)
Q Consensus 303 --------------------~-~i~l~l~G~~q~~Na~lAia~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (1255)
. .++++++|.||++|+++|++++..+
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~hn~~NalaAia~~~~l--------------------------------- 335 (498)
T PRK02006 289 PSRRRKKDAAPPPDIRLKRLMPADALRIRGLHNAANALAALALARAI--------------------------------- 335 (498)
T ss_pred cccccccccccccccchhceeeHhhcCCCcHHHHHHHHHHHHHHHHc---------------------------------
Confidence 0 1357899999999999999988765
Q ss_pred CCCCccCCCCCCCCccccCCCCCCCCccccccccCCCCCCCChHHHHHHHhcCC-CCCceEEEEe-cCcEEEEc-cCCCH
Q psy15432 362 GHLSSCETPGGQGHLSFSETPGGQGHLTGNQSSLLMGPHFEIDPKTYRGIKACV-WPGRVQVIRK-NNFKYFLD-GAHTT 438 (1255)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~e~i~~gL~~~~-~pGR~e~v~~-~~~~vilD-gAHnp 438 (1255)
+++ ++.+.++|++|+ ||||||++.. +++.||.| ++|||
T Consensus 336 --------------------------------------gi~-~~~i~~aL~~f~~~~gR~e~~~~~~g~~~idDs~~tn~ 376 (498)
T PRK02006 336 --------------------------------------GLP-AAPLLHGLREYRGEPHRVELVATIDGVDYYDDSKGTNV 376 (498)
T ss_pred --------------------------------------CCC-HHHHHHHHhhCCCCCCceEEEEEECCEEEEEcCCCCCH
Confidence 667 899999999998 9999999974 56777778 48999
Q ss_pred HHHHHHHHHHHhhhhcccccCccCCCCCCCCCccCCCCCccEEEEEecC-CCCChhhhhHHhhccCCCcEEEEcC
Q psy15432 439 DSIELCAKWFLRKSEAEASSSRSVSSCPLDPTQSKSSNVIQRILVFNVT-GERDPTKLLSPLLQSNQFEYILVTP 512 (1255)
Q Consensus 439 ~si~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilVfg~~-~drD~~~ll~~L~~~~~~d~vi~t~ 512 (1255)
+|+.++++.+. + ++++|+|.+ .++|...+.+.+ ....|.||++.
T Consensus 377 ~s~~~al~~~~-----~-----------------------~ii~IlGg~~~~~~~~~~~~~l--~~~~~~vi~~G 421 (498)
T PRK02006 377 GATVAALDGLA-----Q-----------------------RVVLIAGGDGKGQDFSPLAAPV--ARHARAVVLIG 421 (498)
T ss_pred HHHHHHHHhCC-----C-----------------------CEEEEEcCCCCCCCHHHHHHHH--HHhCCEEEEEc
Confidence 99998887651 1 688899876 377888877766 34578888863
|
|
| >PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=6e-31 Score=319.37 Aligned_cols=321 Identities=14% Similarity=0.134 Sum_probs=220.4
Q ss_pred chHHHHHHHHHhcCcccccccceEEEecCCCCCccHHHHHHHHHHHCCCCeEEEcCcccccccceeeeCCeecChhhhhh
Q psy15432 699 QVDQVVQYLGHLNITLDDIKKLNVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTK 778 (1255)
Q Consensus 699 ~v~~~~~~L~~Lg~~~~~~~~l~vIhVTGTnGKgST~aml~sILr~~G~rtGl~tSPhL~~~~ERI~InG~pIs~~~f~~ 778 (1255)
.++...+.++.++.+. ...++|+||||||||||++|+++||+.+|+++++.++. ....+.
T Consensus 103 ~~e~~~~~~~~l~~~~---~~~~~I~VTGTnGKTTTt~ml~~iL~~~g~~~~~~Gni----------------~~~~~~- 162 (498)
T PRK02006 103 EIELFAQALAALGASG---YAPKVLAITGTNGKTTTTALTGLLCERAGKKVAVAGNI----------------SPAALD- 162 (498)
T ss_pred HHHHHHHHHhhhcccc---CCCCEEEEECCCcHHHHHHHHHHHHHHcCCCEEEECCC----------------CHHHHH-
Confidence 4555666677777665 23489999999999999999999999999998874321 111100
Q ss_pred HHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHHhhhcC--CCCEEEEecccCCccccccccCCCcEEEEcCCCchhhhhcC
Q psy15432 779 YFWTVYNALHAKRKHAEDMPAYFKFLTVMSFYVFVKE--KPDAVIMEVGIGGRYDNTNIIPNTAVVGITSLGYDHTAVLG 856 (1255)
Q Consensus 779 ~~~~v~~~l~~~~~~~~~~pt~Fe~lT~mAf~~F~~~--~vD~aVlEVG~GGr~D~TNvi~~P~VavITnIg~DHl~~LG 856 (1255)
.+.+. ... ..|++|+|+++.+. +.++.+ +|+++|||||+.||+++||
T Consensus 163 -------~~~~~----------------------~~~~~~~~~~V~E~ss~~l-~~~~~~-~p~iaviTNI~~DHld~~g 211 (498)
T PRK02006 163 -------KLMEA----------------------IDAGALPDVWVLELSSFQL-ETTHTL-APDAATVLNITQDHLDWHG 211 (498)
T ss_pred -------HHHHh----------------------hccCCCCcEEEEEccHHHh-Cccccc-CCCEEEEcCCChhhhcccC
Confidence 00000 112 24899999998754 556666 6999999999999999999
Q ss_pred CCHHHHHHHHhccccCCceEEEccCCCChhHHHHHHHhhhcCCeEEEcCCc-------------c--ceecc--C-----
Q psy15432 857 NTIEEITMQKAGIMKPNCIAVTSANQRGPCKQILLETSRALNCVLLEAPSI-------------L--NYRWR--G----- 914 (1255)
Q Consensus 857 ~TleeIA~~KagI~K~g~~av~~~~qd~~~~~vl~~~A~~~~~~l~~~~~~-------------~--~~~~~--~----- 914 (1255)
|+|+|+.+|++||+++..+|++. +++....+..+.+. ..++.++.. . .+.+. .
T Consensus 212 -s~e~y~~aK~~i~~~~~~~Vln~-dd~~~~~~~~~~~~---~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (498)
T PRK02006 212 -SMAAYAAAKARIFGPRTVRVLNR-DDARVMAMAPPGGA---ADAVTFGLDEPAADGDYGLLRDNGMAWLVEAEDRDAAD 286 (498)
T ss_pred -CHHHHHHHHHHHcCCCCEEEEeC-CCHHHHHHhhccCC---ccEEEEeCCCccccccceEEecCCeEEEEecCcccccc
Confidence 89999999999999888999987 45444433322111 111121100 0 00000 0
Q ss_pred --------------------C---ccccCCCchhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHhhhhhcCCCCCCCC
Q psy15432 915 --------------------Q---PLDEDWKSTVQSINISLAIQLAYLWMFRMNKSAELKSVIDKFLAEMRVSSPNETPG 971 (1255)
Q Consensus 915 --------------------~---~v~l~L~G~hq~~Na~lAiala~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 971 (1255)
. .++++++|.||++|+++|++++..
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~hn~~NalaAia~~~~-------------------------------- 334 (498)
T PRK02006 287 PAPSRRRKKDAAPPPDIRLKRLMPADALRIRGLHNAANALAALALARA-------------------------------- 334 (498)
T ss_pred cccccccccccccccccchhceeeHhhcCCCcHHHHHHHHHHHHHHHH--------------------------------
Confidence 0 135789999999999999998875
Q ss_pred CCCCCCcCCCCCCCCCccccCCCCCCCCcccccccccCCCCCCCC-HHHHHHHhcCC-CCCcEEEEee-cCcEEEEE-cC
Q psy15432 972 GQGHLSSCETPGGQGHLSFSETPGGQGHLTGNQSSLLMGPHFEID-PKTYRGIKACV-WPGRVQVIRK-NNFKYFLD-GA 1047 (1255)
Q Consensus 972 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~i~-~~i~~gL~~~~-~pGR~E~v~~-~~~~vilD-gA 1047 (1255)
+|++ +++.++|++|. ||||||++.. +++.+|.| ++
T Consensus 335 -----------------------------------------lgi~~~~i~~aL~~f~~~~gR~e~~~~~~g~~~idDs~~ 373 (498)
T PRK02006 335 -----------------------------------------IGLPAAPLLHGLREYRGEPHRVELVATIDGVDYYDDSKG 373 (498)
T ss_pred -----------------------------------------cCCCHHHHHHHHhhCCCCCCceEEEEEECCEEEEEcCCC
Confidence 4666 67999999998 9999999974 56667777 58
Q ss_pred cCHHHHHHHHHHHHhhhccccCCCcccCCCCCcEEEEEecCC-CCChhhhhhhhhcCCCCcEEEEcCCCCcccccccCCC
Q psy15432 1048 HTTDSIELCAKWFLRKSEAEANPTQSKSSNVIQRILVFNVTG-ERDPTKLLSPLLQSNQFEYILVTPNILTNEIRWRGQP 1126 (1255)
Q Consensus 1048 HNP~S~~a~l~~l~~~~~~~~~~~~~~~~~~~~~vlVfg~~~-drD~~~ll~~L~~~~~~d~vi~t~~~~~~~~~~~~~~ 1126 (1255)
|||+|+.++++.+. +++++|+|.++ +++...+++.+ ....|.||+++.....-......
T Consensus 374 tn~~s~~~al~~~~-----------------~~ii~IlGg~~~~~~~~~~~~~l--~~~~~~vi~~G~~~~~i~~~~~~- 433 (498)
T PRK02006 374 TNVGATVAALDGLA-----------------QRVVLIAGGDGKGQDFSPLAAPV--ARHARAVVLIGRDAPAIRAALAG- 433 (498)
T ss_pred CCHHHHHHHHHhCC-----------------CCEEEEEcCCCCCCCHHHHHHHH--HHhCCEEEEEcCCHHHHHHHHhh-
Confidence 99999999888651 35788998764 78888887777 33468898886443221111000
Q ss_pred CCcccccccccccCCHHHHHHHHHHHcCCCc-eEEeecCCCCCCcccc
Q psy15432 1127 LDEDWKSTVQSINISLAIQLAYLWMFRMNKS-AELKRNQSSLPMGPHF 1173 (1255)
Q Consensus 1127 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~ 1173 (1255)
.+....+..+.++.++.+.....+.+ +.+..++.|+.|-+-|
T Consensus 434 -----~~~~~~~~~~~~eAi~~a~~~~~~gd~VLlsp~~~S~d~f~~~ 476 (498)
T PRK02006 434 -----TGVPLVDAATLEEAVRAAAALAQPGDAVLLSPACASLDMFRNY 476 (498)
T ss_pred -----CCCceEecCCHHHHHHHHHHhcCCCCEEEEChhhcccccccCH
Confidence 01112234578888888877666654 4455699999998433
|
|
| >PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=5.4e-31 Score=314.76 Aligned_cols=248 Identities=15% Similarity=0.211 Sum_probs=184.2
Q ss_pred ccEEEEcCCCChhHHHHHHHHHHHHCCCCeEEEcCCcccccceeEEeCCeecChhhhhhHHHHHHHHHHhhhhccCCcch
Q psy15432 108 LNVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTKYFWTVYNALHAKRKHAEDMPA 187 (1255)
Q Consensus 108 l~vIhVtGTnGKgST~a~l~sIL~~~G~k~Gl~tSPhL~~~rERI~InG~~is~~~ft~~~~~v~~~l~~~~~~~~~~p~ 187 (1255)
.++|+||||||||||++|+.+||+.+|+++++.++. |.|.
T Consensus 105 ~~~I~VTGTnGKTTTt~ll~~iL~~~g~~~~~~gni------------g~p~---------------------------- 144 (438)
T PRK03806 105 APIVAITGSNGKSTVTTLVGEMAKAAGWKVGVGGNI------------GLPA---------------------------- 144 (438)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHHHcCCCEEEeCCc------------chhH----------------------------
Confidence 369999999999999999999999999987765432 1111
Q ss_pred HHHHHHHHhhhhhhccCCCEEEEeeccCCccccccccCCccEEEEcCCCcchhhhcCCCHHHHHHHHHcccCCCceeeec
Q psy15432 188 YFKFLTVMSFYVFVKEKPDAVIMEVGIGGRYDNTNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIMKPNCIAVTS 267 (1255)
Q Consensus 188 ~Fe~Lt~~A~~~F~~~~vD~aVlEvG~GGr~D~tnii~~P~v~vITnIg~DHld~lG~Tle~Ia~~KagI~k~g~~~v~~ 267 (1255)
+. ..+.+.|++|+|+|+.+ +|.++.+ +|+++|||||+.||+|+||+|+|+|+.+|++|++...++|++
T Consensus 145 ----~~------~~~~~~~~~V~E~ss~~-l~~~~~~-~p~iaViTNI~~DHld~~g~s~e~~~~~K~~i~~~~~~~v~n 212 (438)
T PRK03806 145 ----LS------LLDQECELYVLELSSFQ-LETTSSL-KAAAATILNVTEDHMDRYPFGLQQYRAAKLRIYENAKVCVVN 212 (438)
T ss_pred ----HH------hhccCCCEEEEEccchh-hccCccc-CCCEEEEecCcHHHhccccCCHHHHHHHHHHHHhCCCeEEEe
Confidence 00 13456799999999975 4678887 699999999999999999779999999999999988888888
Q ss_pred cCCCchHHHHHHHhhhccCceEEEcCCc---------ceeee-cCc----ccccCCCchhHHhhHHHHHHHHHHHHHhhc
Q psy15432 268 ANQRGPCKQILLETSRALNCVLLEAPSI---------LNYRW-RGQ----PLDEDWKSTVQSINISLAIQLAYLWMFRMN 333 (1255)
Q Consensus 268 ~~q~~e~~~vl~~~a~~~~~~l~~~~~~---------~~~~~-~~~----~i~l~l~G~~q~~Na~lAia~a~~~l~~~~ 333 (1255)
. +++.+.. +.+... .+..+..... ..+.+ .+. .++++++|.||+.|+++|++++..+
T Consensus 213 ~-dd~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~hn~~Na~aAia~a~~l----- 283 (438)
T PRK03806 213 A-DDALTMP-IRGADK--RCVSFGVNMGDYHLNRQQGETWLRVKGEKVLNTKEMKLSGQHNYTNALAALALADAV----- 283 (438)
T ss_pred C-CCHHHHH-HhcCCc--eEEEEecCCCceEEEecCCeEEEEecCceeeehhhcCCcccccHHHHHHHHHHHHHc-----
Confidence 7 5555544 322211 1122221110 00111 111 3468999999999999999988765
Q ss_pred cchhhhhHHHHhhhhhccCCCCCCCCCCCCCCccCCCCCCCCccccCCCCCCCCccccccccCCCCCCCChHHHHHHHhc
Q psy15432 334 KSAELKSVIDKFLAEMRVSSPNETPGGQGHLSSCETPGGQGHLSFSETPGGQGHLTGNQSSLLMGPHFEIDPKTYRGIKA 413 (1255)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~e~i~~gL~~ 413 (1255)
+++ ++++.++|++
T Consensus 284 ------------------------------------------------------------------gi~-~~~i~~~L~~ 296 (438)
T PRK03806 284 ------------------------------------------------------------------GIP-RASSLKALTT 296 (438)
T ss_pred ------------------------------------------------------------------CCC-HHHHHHHHHh
Confidence 567 8999999999
Q ss_pred CC-CCCceEEEEe-cCcEEEEc-cCCCHHHHHHHHHHHHhhhhcccccCccCCCCCCCCCccCCCCCccEEEEEecC-CC
Q psy15432 414 CV-WPGRVQVIRK-NNFKYFLD-GAHTTDSIELCAKWFLRKSEAEASSSRSVSSCPLDPTQSKSSNVIQRILVFNVT-GE 489 (1255)
Q Consensus 414 ~~-~pGR~e~v~~-~~~~vilD-gAHnp~si~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilVfg~~-~d 489 (1255)
|+ ||||||++.. +++.+|+| |||||+|++++++.++. . .++++|||++ .+
T Consensus 297 f~~~~gR~E~v~~~~~~~~i~Ds~a~n~~a~~~al~~l~~---~-----------------------~~~i~IlG~~~k~ 350 (438)
T PRK03806 297 FTGLPHRFQLVLEHNGVRWINDSKATNVGSTEAALNGLHV---D-----------------------GTLHLLLGGDGKS 350 (438)
T ss_pred CCCCCCeEEEEEeeCCEEEEEcCCCCCHHHHHHHHHhCcc---C-----------------------CcEEEEECCcCCC
Confidence 98 9999999975 46777877 89999999999988751 1 1689999986 55
Q ss_pred CChhhhhHHhhccCCCcEEEEc
Q psy15432 490 RDPTKLLSPLLQSNQFEYILVT 511 (1255)
Q Consensus 490 rD~~~ll~~L~~~~~~d~vi~t 511 (1255)
.|+..+.+.+ ..... .++++
T Consensus 351 ~d~~~l~~~l-~~~~~-~v~~~ 370 (438)
T PRK03806 351 ADFSPLARYL-NGDNI-RLYCF 370 (438)
T ss_pred CCHHHHHHHH-HhhCc-EEEEE
Confidence 6888877777 33323 55555
|
|
| >PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=7.4e-31 Score=316.57 Aligned_cols=298 Identities=15% Similarity=0.115 Sum_probs=204.8
Q ss_pred eEEEecCCCCCccHHHHHHHHHHHCCCCeEEEcCcccccccceeeeCCeecChhhhhhHHHHHHHHHHHHhhcCCCCCcH
Q psy15432 721 NVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTKYFWTVYNALHAKRKHAEDMPAY 800 (1255)
Q Consensus 721 ~vIhVTGTnGKgST~aml~sILr~~G~rtGl~tSPhL~~~~ERI~InG~pIs~~~f~~~~~~v~~~l~~~~~~~~~~pt~ 800 (1255)
++|+||||||||||++|+++||+..|+++++.++. |.|++...
T Consensus 122 ~vIaVTGTnGKTTTt~ml~~iL~~~g~~~~~~Gni------------g~p~~~~l------------------------- 164 (473)
T PRK00141 122 TWLAVTGTNGKTTTTAMLAAMMQEGGFAAQAVGNI------------GVPVSAAL------------------------- 164 (473)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHHhcCCcEEEeccC------------ChhHHHHH-------------------------
Confidence 69999999999999999999999999988766542 44443110
Q ss_pred HHHHHHHHHHhhhcCCCCEEEEecccCCccccccccCCCcEEEEcCCCchhhhhcCCCHHHHHHHHhccccCCceEEEcc
Q psy15432 801 FKFLTVMSFYVFVKEKPDAVIMEVGIGGRYDNTNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIMKPNCIAVTSA 880 (1255)
Q Consensus 801 Fe~lT~mAf~~F~~~~vD~aVlEVG~GGr~D~TNvi~~P~VavITnIg~DHl~~LG~TleeIA~~KagI~K~g~~av~~~ 880 (1255)
-...++|++|+|+|+.+. +.+..+ +|+++|||||+.||++++| |+|+|+.+|+.||+. ..+|++.
T Consensus 165 -----------~~~~~~~~~V~E~ss~~l-~~~~~~-~pdiaViTNi~~dHLd~~~-s~e~y~~aK~~l~~~-~~~vln~ 229 (473)
T PRK00141 165 -----------VAQPRIDVLVAELSSFQL-HWSPTL-TPDVGVVLNLAEDHIDWHG-SMRDYAADKAKVLRG-PVAVIGA 229 (473)
T ss_pred -----------hcCCCCCEEEEecCCccc-ccCccc-CCCEEEEcCCChhhccccC-CHHHHHHHHHHHhhC-CEEEEEC
Confidence 023568999999999875 334444 7999999999999999999 999999999999975 4677887
Q ss_pred CCCChhHHHHHHHhhhcCCeEEEcC--C-c-cc--e-----ec--cCC------ccccCCCchhHHHHHHHHHHHHHHHH
Q psy15432 881 NQRGPCKQILLETSRALNCVLLEAP--S-I-LN--Y-----RW--RGQ------PLDEDWKSTVQSINISLAIQLAYLWM 941 (1255)
Q Consensus 881 ~qd~~~~~vl~~~A~~~~~~l~~~~--~-~-~~--~-----~~--~~~------~v~l~L~G~hq~~Na~lAiala~~~l 941 (1255)
+ ++....+..... ...++.++ . . .. + .. .+. .+.++++|.||++|+++|++++..
T Consensus 230 -D-d~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~hn~~Na~aA~a~~~~-- 303 (473)
T PRK00141 230 -D-DEYVVQLTSAAD--LSGLIGFTMGEPAAGQVGVRDGELVDNAFGQNVVLASAEGISPAGPAGVLDALAAAAVARS-- 303 (473)
T ss_pred -C-CHHHHHHHhhcC--CCcEEEEeCCCCCcCcceEECCEEEEecCCCceEEeehhhcCCCcHhHHHHHHHHHHHHHH--
Confidence 4 444333332221 11222221 0 0 00 1 00 011 235789999999999999998775
Q ss_pred HhhcchhhhhhHHHHHhhhhhcCCCCCCCCCCCCCCcCCCCCCCCCccccCCCCCCCCcccccccccCCCCCCCC-HHHH
Q psy15432 942 FRMNKSAELKSVIDKFLAEMRVSSPNETPGGQGHLSSCETPGGQGHLSFSETPGGQGHLTGNQSSLLMGPHFEID-PKTY 1020 (1255)
Q Consensus 942 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~i~-~~i~ 1020 (1255)
+|++ +.+.
T Consensus 304 -----------------------------------------------------------------------lgi~~~~i~ 312 (473)
T PRK00141 304 -----------------------------------------------------------------------QGVAPEAIA 312 (473)
T ss_pred -----------------------------------------------------------------------cCCCHHHHH
Confidence 4566 6799
Q ss_pred HHHhcCCCCC-cEEEEeecCcEEEEEc--CcCHHHHHHHHHHHHhhhccccCCCcccCCCCCcEEEEE-ecCCCCChhhh
Q psy15432 1021 RGIKACVWPG-RVQVIRKNNFKYFLDG--AHTTDSIELCAKWFLRKSEAEANPTQSKSSNVIQRILVF-NVTGERDPTKL 1096 (1255)
Q Consensus 1021 ~gL~~~~~pG-R~E~v~~~~~~vilDg--AHNP~S~~a~l~~l~~~~~~~~~~~~~~~~~~~~~vlVf-g~~~drD~~~l 1096 (1255)
+||++++||+ |||++...+..+++|+ ||||+|+++++++++ ++++|| |++.|||.+.|
T Consensus 313 ~~l~~~~~~~~R~e~~~~~~~~~iiDdsyahNp~s~~~~l~~l~------------------~~~~i~gG~~kdkd~~~~ 374 (473)
T PRK00141 313 RALSSFEVAGHRGQVVAEHGGVTWIDNSKATNPHAADAALAGHE------------------SVVWVAGGQLKGADIDDL 374 (473)
T ss_pred HHHhhCCCCCCceEEEEEeCCEEEEEcCCCCCHHHHHHHHHhcC------------------CEEEEecCccCCCChHHH
Confidence 9999999887 9999975433466665 999999999998763 358889 78899999999
Q ss_pred hhhhhcCCCCcEEEEcCCCCcccccccCCCCCcccccccccc--cC----CHHHHHHHHHHHcCC-CceEEeecCCCCCC
Q psy15432 1097 LSPLLQSNQFEYILVTPNILTNEIRWRGQPLDEDWKSTVQSI--NI----SLAIQLAYLWMFRMN-KSAELKRNQSSLPM 1169 (1255)
Q Consensus 1097 l~~L~~~~~~d~vi~t~~~~~~~~~~~~~~~~~~~~~d~~~~--~~----~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~ 1169 (1255)
+..+ .+. .+.+++.++..........+. ........ .. +.++.++.++....+ +.+++..++.|++|
T Consensus 375 ~~~l-~~~-~~~~~~~~~~r~~~~~~l~~~----~~~~~~~~~~~~~~~~~l~~Av~~a~~~a~~gd~VllsPa~aS~d~ 448 (473)
T PRK00141 375 IRTH-APR-IKAAVVLGVDRAEIVAALAEH----APDAPVTVTDSTDPEEAMEEAVSAAVSLAEPGDTVLLAPAAASLDM 448 (473)
T ss_pred HHHH-Hhh-ccEEEEECCCHHHHHHHHHhc----CCCCcEEEecCcccccCHHHHHHHHHHhCCCCCEEEeChhhhcccc
Confidence 9998 443 445555543322111111000 00000011 11 336777777765544 67889999999999
Q ss_pred cc
Q psy15432 1170 GP 1171 (1255)
Q Consensus 1170 ~~ 1171 (1255)
.+
T Consensus 449 f~ 450 (473)
T PRK00141 449 YT 450 (473)
T ss_pred cc
Confidence 83
|
|
| >PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=6.2e-31 Score=314.97 Aligned_cols=246 Identities=16% Similarity=0.133 Sum_probs=178.5
Q ss_pred ccEEEEcCCCChhHHHHHHHHHHHHCCCCeEEEcCCcccccceeEEeCCeecChhhhhhHHHHHHHHHHhhhhccCCcch
Q psy15432 108 LNVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTKYFWTVYNALHAKRKHAEDMPA 187 (1255)
Q Consensus 108 l~vIhVtGTnGKgST~a~l~sIL~~~G~k~Gl~tSPhL~~~rERI~InG~~is~~~ft~~~~~v~~~l~~~~~~~~~~p~ 187 (1255)
.++|+||||||||||+.||.+||+..|+++++.++- |.|+...
T Consensus 108 ~~vI~ITGS~GKTTt~~~l~~iL~~~g~~~~~~g~i------------g~~~~~~------------------------- 150 (450)
T PRK14106 108 APIVAITGTNGKTTTTTLLGEIFKNAGRKTLVAGNI------------GYPLIDA------------------------- 150 (450)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHHHcCCCeEEeCcc------------cHHHHHH-------------------------
Confidence 589999999999999999999999999877655441 1111100
Q ss_pred HHHHHHHHhhhhhhccCCCEEEEeeccCCccccccccCCccEEEEcCCCcchhhhcCCCHHHHHHHHHcccCCCce---e
Q psy15432 188 YFKFLTVMSFYVFVKEKPDAVIMEVGIGGRYDNTNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIMKPNCI---A 264 (1255)
Q Consensus 188 ~Fe~Lt~~A~~~F~~~~vD~aVlEvG~GGr~D~tnii~~P~v~vITnIg~DHld~lG~Tle~Ia~~KagI~k~g~~---~ 264 (1255)
.. .....|++|+|+|+.+.-. ..++ +|+++|||||+.||+++|| |+|+|+.+|++||++..| +
T Consensus 151 ------~~-----~~~~~~~~v~E~~~~~~~~-~~~~-~P~i~VITnI~~dHl~~~g-t~e~ia~~K~~i~~~~~~~~~~ 216 (450)
T PRK14106 151 ------VE-----EYGEDDIIVAEVSSFQLET-IKEF-KPKVGCILNITPDHLDRHK-TMENYIKAKARIFENQRPSDYT 216 (450)
T ss_pred ------Hh-----cCCCCCEEEEEcChhhhcc-cccc-CCCEEEEecCCcchhcccC-CHHHHHHHHHHHHhCCCCCCEE
Confidence 00 1125799999999874322 2333 7999999999999999999 999999999999987654 4
Q ss_pred eeccCCCchHHHHHHHhhhccCceEEEcCCc-----------ce--eeecCc------ccccCCCchhHHhhHHHHHHHH
Q psy15432 265 VTSANQRGPCKQILLETSRALNCVLLEAPSI-----------LN--YRWRGQ------PLDEDWKSTVQSINISLAIQLA 325 (1255)
Q Consensus 265 v~~~~q~~e~~~vl~~~a~~~~~~l~~~~~~-----------~~--~~~~~~------~i~l~l~G~~q~~Na~lAia~a 325 (1255)
+++. ++ +.. ...+.+.++.++.++.. .. +...+. .+.++++|.||++|+++|++++
T Consensus 217 vln~-d~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~h~~~Na~aAia~~ 291 (450)
T PRK14106 217 VLNY-DD-PRT---RSLAKKAKARVIFFSRKSLLEEGVFVKNGKIVISLGGKEEEVIDIDEIFIPGEHNLENALAATAAA 291 (450)
T ss_pred EEeC-Cc-HHH---HHHHhhcCceEEEEecCccCcCceEEECCEEEEecCCCcceEEEHHHcCCCCHHHHHHHHHHHHHH
Confidence 5554 33 332 22233333444332210 00 111111 1367899999999999999988
Q ss_pred HHHHHhhccchhhhhHHHHhhhhhccCCCCCCCCCCCCCCccCCCCCCCCccccCCCCCCCCccccccccCCCCCCCChH
Q psy15432 326 YLWMFRMNKSAELKSVIDKFLAEMRVSSPNETPGGQGHLSSCETPGGQGHLSFSETPGGQGHLTGNQSSLLMGPHFEIDP 405 (1255)
Q Consensus 326 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~e 405 (1255)
..+ +++ ++
T Consensus 292 ~~l-----------------------------------------------------------------------gi~-~~ 299 (450)
T PRK14106 292 YLL-----------------------------------------------------------------------GIS-PD 299 (450)
T ss_pred HHc-----------------------------------------------------------------------CCC-HH
Confidence 765 567 89
Q ss_pred HHHHHHhcCC-CCCceEEEEe-cCcEEEEc-cCCCHHHHHHHHHHHHhhhhcccccCccCCCCCCCCCccCCCCCccEEE
Q psy15432 406 KTYRGIKACV-WPGRVQVIRK-NNFKYFLD-GAHTTDSIELCAKWFLRKSEAEASSSRSVSSCPLDPTQSKSSNVIQRIL 482 (1255)
Q Consensus 406 ~i~~gL~~~~-~pGR~e~v~~-~~~~vilD-gAHnp~si~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il 482 (1255)
++.+||+++. ||||||++.. ++..+|+| |||||+|+++++++++ . ++++
T Consensus 300 ~i~~~L~~~~~~~gR~e~i~~~~~~~vi~D~~ahNP~s~~~~l~~l~-----~-----------------------~~i~ 351 (450)
T PRK14106 300 VIANTLKTFKGVEHRIEFVAEINGVKFINDSKGTNPDAAIKALEAYE-----T-----------------------PIVL 351 (450)
T ss_pred HHHHHHHhCCCCCcceEEEeeECCEEEEeCCCccCHHHHHHHHHhCC-----C-----------------------CeEE
Confidence 9999999998 9999999974 45679999 7999999999988762 1 4778
Q ss_pred EEec-CCCCChhhhhHHhhccCCCcEEEEc
Q psy15432 483 VFNV-TGERDPTKLLSPLLQSNQFEYILVT 511 (1255)
Q Consensus 483 Vfg~-~~drD~~~ll~~L~~~~~~d~vi~t 511 (1255)
|||. ..++|+.++++.+ + ..+|.++++
T Consensus 352 v~g~~~~~k~~~~~~~~l-~-~~~~~vi~~ 379 (450)
T PRK14106 352 IAGGYDKGSDFDEFAKAF-K-EKVKKLILL 379 (450)
T ss_pred EeCCcCCCCCHHHHHHHH-H-hhCCEEEEE
Confidence 8874 4778999999888 3 347888877
|
|
| >TIGR01081 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.9e-30 Score=311.11 Aligned_cols=251 Identities=16% Similarity=0.222 Sum_probs=174.4
Q ss_pred cEEEEcCCCChhHHHHHHHHHHHHCCCCeEEE--cCCcccccceeEEeCCeecChhhhhhHHHHHHHHHHhhhhccCCcc
Q psy15432 109 NVIHISGTKGKGSTCAYCESILRSHGFSTGFF--SSPHLIEVRERIKLNGEPISYDKFTKYFWTVYNALHAKRKHAEDMP 186 (1255)
Q Consensus 109 ~vIhVtGTnGKgST~a~l~sIL~~~G~k~Gl~--tSPhL~~~rERI~InG~~is~~~ft~~~~~v~~~l~~~~~~~~~~p 186 (1255)
++|+||||||||||++|+.+||+++|++++.+ .++. + + |.|..
T Consensus 103 ~~I~ITGT~GKTTTt~li~~iL~~~g~~~~~~~~~~~g--n----~---G~~~~-------------------------- 147 (448)
T TIGR01081 103 WVLAVAGTHGKTTTASMLAWVLEQCGLKPGFLIGGVPG--N----F---GVSAR-------------------------- 147 (448)
T ss_pred CEEEEECCCcHHHHHHHHHHHHHhcCCCCcEEeCcccc--c----C---ccccc--------------------------
Confidence 49999999999999999999999999988633 1111 0 0 21111
Q ss_pred hHHHHHHHHhhhhhhccCCCEEEEeeccCC--ccc----cccccCCccEEEEcCCCcchhhhcCCCHHHHHHHHHcccC-
Q psy15432 187 AYFKFLTVMSFYVFVKEKPDAVIMEVGIGG--RYD----NTNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIMK- 259 (1255)
Q Consensus 187 ~~Fe~Lt~~A~~~F~~~~vD~aVlEvG~GG--r~D----~tnii~~P~v~vITnIg~DHld~lG~Tle~Ia~~KagI~k- 259 (1255)
. ...|++|+|+|+.. ..+ ..++ +|+++|||||+.||+++|+ |+++|+.+|++|++
T Consensus 148 --------------~-~~~~~~V~E~~s~~~~~~~~l~~~~~~--~P~iaVITNI~~DHld~~~-t~e~~~~~K~~i~~~ 209 (448)
T TIGR01081 148 --------------L-GESPFFVIEADEYDTAFFDKRSKFVHY--RPRTLVLNNLEFDHADIFD-DLKAIQRQFHHLVRT 209 (448)
T ss_pred --------------c-CCCCEEEEEccCcCccccccccceeec--CCCEEEEeCCChHhccccC-CHHHHHHHHHHHHHh
Confidence 1 23699999999983 322 2223 7999999999999999998 99999999999997
Q ss_pred -CC-ceeeeccCCCchHHHHHHHhhhccCceEEEcC----------Ccceeee--cCc---ccccCCCchhHHhhHHHHH
Q psy15432 260 -PN-CIAVTSANQRGPCKQILLETSRALNCVLLEAP----------SILNYRW--RGQ---PLDEDWKSTVQSINISLAI 322 (1255)
Q Consensus 260 -~g-~~~v~~~~q~~e~~~vl~~~a~~~~~~l~~~~----------~~~~~~~--~~~---~i~l~l~G~~q~~Na~lAi 322 (1255)
++ ..+|++. +++.+...+.+.+..+ +..+... ....+.+ .+. .+.+++.|.||+.|+++|+
T Consensus 210 ~~~~~~~i~n~-dd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~hn~~Na~~A~ 287 (448)
T TIGR01081 210 VPGEGLILCPG-RDQSLKDTLAKGCWSE-QEFFGEQGEWQAEKITADGSHFDVLLDGEKVGEVKWSLVGRHNMHNALMAI 287 (448)
T ss_pred CCCCCEEEEeC-CCHHHHHHHHhccCCC-eEEECCCCCEEEEEEecCCcEEEEEECCceeEEEEecCCcHHHHHHHHHHH
Confidence 33 4566666 5555554444322111 1111100 0001111 111 3567899999999999999
Q ss_pred HHHHHHHHhhccchhhhhHHHHhhhhhccCCCCCCCCCCCCCCccCCCCCCCCccccCCCCCCCCccccccccCCCCCCC
Q psy15432 323 QLAYLWMFRMNKSAELKSVIDKFLAEMRVSSPNETPGGQGHLSSCETPGGQGHLSFSETPGGQGHLTGNQSSLLMGPHFE 402 (1255)
Q Consensus 323 a~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 402 (1255)
+++..+ +++
T Consensus 288 a~~~~l-----------------------------------------------------------------------gi~ 296 (448)
T TIGR01081 288 AAARHV-----------------------------------------------------------------------GVA 296 (448)
T ss_pred HHHHHc-----------------------------------------------------------------------CCC
Confidence 988754 556
Q ss_pred ChHHHHHHHhcCC-CCCceEEEEe-cCcEEEEccCCCHHHHHHHHHHHHhhhhcccccCccCCCCCCCCCccCCCCCccE
Q psy15432 403 IDPKTYRGIKACV-WPGRVQVIRK-NNFKYFLDGAHTTDSIELCAKWFLRKSEAEASSSRSVSSCPLDPTQSKSSNVIQR 480 (1255)
Q Consensus 403 l~e~i~~gL~~~~-~pGR~e~v~~-~~~~vilDgAHnp~si~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (1255)
.+.+.++|+++. ||||||++.. +++.||+|+||||+|++++++++++.... +++
T Consensus 297 -~~~i~~~L~~~~~~~~R~e~~~~~~g~~ii~D~ahNp~s~~~~l~~l~~~~~~-----------------------~~i 352 (448)
T TIGR01081 297 -IEDACEALGSFVNAKRRLELKGEANGITVYDDFAHHPTAIEATLQGLRQKVGG-----------------------ARI 352 (448)
T ss_pred -HHHHHHHHHhCCCCCcceEEEEecCCeEEEEeCCCCHHHHHHHHHHHHHhcCC-----------------------CeE
Confidence 889999999998 8999999975 56789999999999999999999864321 267
Q ss_pred EEEEecCCC-----CChhhhhHHhhccCCCcEEEEcC
Q psy15432 481 ILVFNVTGE-----RDPTKLLSPLLQSNQFEYILVTP 512 (1255)
Q Consensus 481 ilVfg~~~d-----rD~~~ll~~L~~~~~~d~vi~t~ 512 (1255)
++|||...+ -+.++ +..+ . ..+|.+++++
T Consensus 353 i~I~g~~~~~~~lg~~~~~-l~~~-~-~~~d~vi~~~ 386 (448)
T TIGR01081 353 LAVLEPRSNTMKLGVHKDD-LAPS-L-GRADQVFLYQ 386 (448)
T ss_pred EEEECCCcchhhhhhHHHH-HHHH-H-HhCCEEEEcC
Confidence 899985421 01222 2333 1 2588998885
|
Alternate name: murein tripeptide ligase |
| >PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=5e-31 Score=319.06 Aligned_cols=245 Identities=14% Similarity=0.136 Sum_probs=181.6
Q ss_pred cEEEEcCCCChhHHHHHHHHHHHHCCCCeEEEcCCcccccceeEEeCCeecChhhhhhHHHHHHHHHHhhhhccCCcchH
Q psy15432 109 NVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTKYFWTVYNALHAKRKHAEDMPAY 188 (1255)
Q Consensus 109 ~vIhVtGTnGKgST~a~l~sIL~~~G~k~Gl~tSPhL~~~rERI~InG~~is~~~ft~~~~~v~~~l~~~~~~~~~~p~~ 188 (1255)
++|+||||||||||++|+.+||+++|+++.+.++- |.|+.
T Consensus 118 ~vIgITGTnGKTTTt~li~~iL~~~g~~~~~~Gni------------G~p~~---------------------------- 157 (488)
T PRK03369 118 RWLVVTGTNGKTTTTSMLHAMLIAAGRRSVLCGNI------------GSPVL---------------------------- 157 (488)
T ss_pred CEEEEECCCcHHHHHHHHHHHHHHcCCceEEeCCC------------chHHH----------------------------
Confidence 69999999999999999999999999887776652 22321
Q ss_pred HHHHHHHhhhhhhccCCCEEEEeeccCCccccccccCCccEEEEcCCCcchhhhcCCCHHHHHHHHHcccCCCceeeecc
Q psy15432 189 FKFLTVMSFYVFVKEKPDAVIMEVGIGGRYDNTNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIMKPNCIAVTSA 268 (1255)
Q Consensus 189 Fe~Lt~~A~~~F~~~~vD~aVlEvG~GGr~D~tnii~~P~v~vITnIg~DHld~lG~Tle~Ia~~KagI~k~g~~~v~~~ 268 (1255)
.. ...+.|++|+|+|+.+. +.+..+ +|+++|||||+.||+|+|| |+|+|+.+|++||+. .++|++.
T Consensus 158 ----~~------~~~~~~~~VlE~ss~ql-~~~~~~-~P~vaVITNI~~DHLd~~g-t~e~ya~aK~~I~~~-~~~Vln~ 223 (488)
T PRK03369 158 ----DV------LDEPAELLAVELSSFQL-HWAPSL-RPEAGAVLNIAEDHLDWHG-TMAAYAAAKARALTG-RVAVVGL 223 (488)
T ss_pred ----Hh------ccCCCCEEEEECChHHh-Cccccc-CCCEEEEcCCCHHHhhhcC-CHHHHHHHHHHHhcC-CEEEEEC
Confidence 00 23578999999998853 434333 7999999999999999999 999999999999984 6778876
Q ss_pred CCCchHHHHHHHhhhccCceEEEcCC----c-----ce-ee--ec-C----cccccCCCchhHHhhHHHHHHHHHHHHHh
Q psy15432 269 NQRGPCKQILLETSRALNCVLLEAPS----I-----LN-YR--WR-G----QPLDEDWKSTVQSINISLAIQLAYLWMFR 331 (1255)
Q Consensus 269 ~q~~e~~~vl~~~a~~~~~~l~~~~~----~-----~~-~~--~~-~----~~i~l~l~G~~q~~Na~lAia~a~~~l~~ 331 (1255)
+++.+. .+.+.+.......+.... . .. +. +. . ..+.++++|.||++|+++|++++..+
T Consensus 224 -dd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~hnv~NalaAla~a~~l--- 298 (488)
T PRK03369 224 -DDSRAA-ALLDTAPAPVRVGFRLGEPAAGELGVRDGHLVDRAFADDLRLAPVASIPVPGPVGVLDALAAAALARAV--- 298 (488)
T ss_pred -CCHHHH-HHHHhCCCcEEEEEeCCCCCcCCceEECCEEEEeccCCccceechhhcCCCcHhHHHHHHHHHHHHHHc---
Confidence 555443 343333221111111111 0 00 00 00 0 12567899999999999999988764
Q ss_pred hccchhhhhHHHHhhhhhccCCCCCCCCCCCCCCccCCCCCCCCccccCCCCCCCCccccccccCCCCCCCChHHHHHHH
Q psy15432 332 MNKSAELKSVIDKFLAEMRVSSPNETPGGQGHLSSCETPGGQGHLSFSETPGGQGHLTGNQSSLLMGPHFEIDPKTYRGI 411 (1255)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~e~i~~gL 411 (1255)
+++ ++++.++|
T Consensus 299 --------------------------------------------------------------------Gi~-~e~i~~~L 309 (488)
T PRK03369 299 --------------------------------------------------------------------GVP-AGAIADAL 309 (488)
T ss_pred --------------------------------------------------------------------CCC-HHHHHHHH
Confidence 567 89999999
Q ss_pred hcCCC-CCceEEEEe-cCcEEEEc-cCCCHHHHHHHHHHHHhhhhcccccCccCCCCCCCCCccCCCCCccEEEEE-ecC
Q psy15432 412 KACVW-PGRVQVIRK-NNFKYFLD-GAHTTDSIELCAKWFLRKSEAEASSSRSVSSCPLDPTQSKSSNVIQRILVF-NVT 487 (1255)
Q Consensus 412 ~~~~~-pGR~e~v~~-~~~~vilD-gAHnp~si~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilVf-g~~ 487 (1255)
++|+| |||||++.. +++.||.| |||||+|++++++.+. ++++|| |..
T Consensus 310 ~~f~~~~gR~E~v~~~~gv~iIDDS~AhNp~s~~aal~~~~-----------------------------~iilI~GG~~ 360 (488)
T PRK03369 310 ASFRVGRHRAEVVAVADGITYVDDSKATNPHAARASILAYP-----------------------------RVVWIAGGLL 360 (488)
T ss_pred HhCCCCCCccEEEEcCCCEEEEECCCCCCHHHHHHHHHhCC-----------------------------CeEEEecCcC
Confidence 99996 999999975 45555556 8999999999996441 588999 788
Q ss_pred CCCChhhhhHHhhccCCCcEEEEcC
Q psy15432 488 GERDPTKLLSPLLQSNQFEYILVTP 512 (1255)
Q Consensus 488 ~drD~~~ll~~L~~~~~~d~vi~t~ 512 (1255)
+++|++.|++.+ ....+.+++..
T Consensus 361 k~~d~~~l~~~l--~~~~~~vi~iG 383 (488)
T PRK03369 361 KGASVDALVAEM--ASRLVGAVLIG 383 (488)
T ss_pred CCCCHHHHHHHH--hhheeEEEEEc
Confidence 999999999988 33467777643
|
|
| >TIGR01081 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.1e-30 Score=310.76 Aligned_cols=315 Identities=13% Similarity=0.130 Sum_probs=207.9
Q ss_pred cchHHHHHHHHHhcCcccccccceEEEecCCCCCccHHHHHHHHHHHCCCCeEEE--cCcccccccceeeeCCeecChhh
Q psy15432 698 VQVDQVVQYLGHLNITLDDIKKLNVIHISGTKGKGSTCAYCESILRSHGFSTGFF--SSPHLIEVRERIKLNGEPISYDK 775 (1255)
Q Consensus 698 ~~v~~~~~~L~~Lg~~~~~~~~l~vIhVTGTnGKgST~aml~sILr~~G~rtGl~--tSPhL~~~~ERI~InG~pIs~~~ 775 (1255)
+.+.++..+...+- +. -++|+||||||||||++|+++||++.|++++.. .++. + + |.|..
T Consensus 86 ~v~~~~e~~~~~~~-~~-----~~~I~ITGT~GKTTTt~li~~iL~~~g~~~~~~~~~~~g--n----~---G~~~~--- 147 (448)
T TIGR01081 86 PYTSGPQWLHDFVL-HD-----RWVLAVAGTHGKTTTASMLAWVLEQCGLKPGFLIGGVPG--N----F---GVSAR--- 147 (448)
T ss_pred CEEeHHHHHHHHHh-cC-----CCEEEEECCCcHHHHHHHHHHHHHhcCCCCcEEeCcccc--c----C---ccccc---
Confidence 35666665433221 11 149999999999999999999999999987632 2221 1 1 33321
Q ss_pred hhhHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHHhhhcCCCCEEEEecccC--Ccccccccc--CCCcEEEEcCCCchh
Q psy15432 776 FTKYFWTVYNALHAKRKHAEDMPAYFKFLTVMSFYVFVKEKPDAVIMEVGIG--GRYDNTNII--PNTAVVGITSLGYDH 851 (1255)
Q Consensus 776 f~~~~~~v~~~l~~~~~~~~~~pt~Fe~lT~mAf~~F~~~~vD~aVlEVG~G--Gr~D~TNvi--~~P~VavITnIg~DH 851 (1255)
. ...|++|+|+|+. |..+...-+ .+|+++|||||+.||
T Consensus 148 -------------------------------------~-~~~~~~V~E~~s~~~~~~~~l~~~~~~~P~iaVITNI~~DH 189 (448)
T TIGR01081 148 -------------------------------------L-GESPFFVIEADEYDTAFFDKRSKFVHYRPRTLVLNNLEFDH 189 (448)
T ss_pred -------------------------------------c-CCCCEEEEEccCcCccccccccceeecCCCEEEEeCCChHh
Confidence 1 1369999999988 433311111 279999999999999
Q ss_pred hhhcCCCHHHHHHHHhcccc--C-CceEEEccCCCChhHHHHHHHhhhcCCeEEEcCCc------------cce--eccC
Q psy15432 852 TAVLGNTIEEITMQKAGIMK--P-NCIAVTSANQRGPCKQILLETSRALNCVLLEAPSI------------LNY--RWRG 914 (1255)
Q Consensus 852 l~~LG~TleeIA~~KagI~K--~-g~~av~~~~qd~~~~~vl~~~A~~~~~~l~~~~~~------------~~~--~~~~ 914 (1255)
+++|| |+|+|+.+|++|++ + ...+|++. +++.+..++.+.+. ..+..++.. ..+ ...+
T Consensus 190 ld~~~-t~e~~~~~K~~i~~~~~~~~~~i~n~-dd~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (448)
T TIGR01081 190 ADIFD-DLKAIQRQFHHLVRTVPGEGLILCPG-RDQSLKDTLAKGCW---SEQEFFGEQGEWQAEKITADGSHFDVLLDG 264 (448)
T ss_pred ccccC-CHHHHHHHHHHHHHhCCCCCEEEEeC-CCHHHHHHHHhccC---CCeEEECCCCCEEEEEEecCCcEEEEEECC
Confidence 99998 99999999999997 3 35677776 45554444433221 111111110 011 1111
Q ss_pred C---ccccCCCchhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHhhhhhcCCCCCCCCCCCCCCcCCCCCCCCCcccc
Q psy15432 915 Q---PLDEDWKSTVQSINISLAIQLAYLWMFRMNKSAELKSVIDKFLAEMRVSSPNETPGGQGHLSSCETPGGQGHLSFS 991 (1255)
Q Consensus 915 ~---~v~l~L~G~hq~~Na~lAiala~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 991 (1255)
. .+.++++|.||+.|+++|++++..
T Consensus 265 ~~~~~~~l~l~G~hn~~Na~~A~a~~~~---------------------------------------------------- 292 (448)
T TIGR01081 265 EKVGEVKWSLVGRHNMHNALMAIAAARH---------------------------------------------------- 292 (448)
T ss_pred ceeEEEEecCCcHHHHHHHHHHHHHHHH----------------------------------------------------
Confidence 1 356789999999999999998775
Q ss_pred CCCCCCCCcccccccccCCCCCCCC-HHHHHHHhcCC-CCCcEEEEee-cCcEEEEEcCcCHHHHHHHHHHHHhhhcccc
Q psy15432 992 ETPGGQGHLTGNQSSLLMGPHFEID-PKTYRGIKACV-WPGRVQVIRK-NNFKYFLDGAHTTDSIELCAKWFLRKSEAEA 1068 (1255)
Q Consensus 992 ~~~~~~~~~~~n~~~~~~~~~~~i~-~~i~~gL~~~~-~pGR~E~v~~-~~~~vilDgAHNP~S~~a~l~~l~~~~~~~~ 1068 (1255)
++++ +.+.+||+++. ||||||++.. +++.||+|+||||+|+++++++++....
T Consensus 293 ---------------------lgi~~~~i~~~L~~~~~~~~R~e~~~~~~g~~ii~D~ahNp~s~~~~l~~l~~~~~--- 348 (448)
T TIGR01081 293 ---------------------VGVAIEDACEALGSFVNAKRRLELKGEANGITVYDDFAHHPTAIEATLQGLRQKVG--- 348 (448)
T ss_pred ---------------------cCCCHHHHHHHHHhCCCCCcceEEEEecCCeEEEEeCCCCHHHHHHHHHHHHHhcC---
Confidence 3556 67999999998 8999999975 4678999999999999999999986421
Q ss_pred CCCcccCCCCCcEEEEEecCCC-----CChhhhhhhhhcCCCCcEEEEcCCCCcccccccCCCCCccccc--ccccccCC
Q psy15432 1069 NPTQSKSSNVIQRILVFNVTGE-----RDPTKLLSPLLQSNQFEYILVTPNILTNEIRWRGQPLDEDWKS--TVQSINIS 1141 (1255)
Q Consensus 1069 ~~~~~~~~~~~~~vlVfg~~~d-----rD~~~ll~~L~~~~~~d~vi~t~~~~~~~~~~~~~~~~~~~~~--d~~~~~~~ 1141 (1255)
.+++++|||...+ -+.++ +..+ .. .+|.+++++....... . .+.+.. ....+..+
T Consensus 349 ---------~~~ii~I~g~~~~~~~lg~~~~~-l~~~-~~-~~d~vi~~~~~~~~~~-~-----~~~~~~~~~~~~~~~~ 410 (448)
T TIGR01081 349 ---------GARILAVLEPRSNTMKLGVHKDD-LAPS-LG-RADQVFLYQPGQIPWD-V-----AEVAAQCVQPANVSAD 410 (448)
T ss_pred ---------CCeEEEEECCCcchhhhhhHHHH-HHHH-HH-hCCEEEEcCCCCCccC-H-----HHHHHhcCCCeEEcCC
Confidence 1356889985421 01222 2333 12 4788988864321100 0 011111 11223457
Q ss_pred HHHHHHHHHHHcCCCceEEeecCCCC
Q psy15432 1142 LAIQLAYLWMFRMNKSAELKRNQSSL 1167 (1255)
Q Consensus 1142 ~~~~~~~~~~~~~~~~~~l~~~~~~~ 1167 (1255)
.++.++.+.....+++++|+-|.++.
T Consensus 411 ~~~a~~~~~~~a~~gd~VLv~gag~~ 436 (448)
T TIGR01081 411 FDAFVAMIVKNAQPGDHILVMSNGGF 436 (448)
T ss_pred HHHHHHHHHHhCCCCCEEEEECCCCH
Confidence 88888888877778899999998864
|
Alternate name: murein tripeptide ligase |
| >TIGR01082 murC UDP-N-acetylmuramate--alanine ligase | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.7e-30 Score=309.74 Aligned_cols=258 Identities=15% Similarity=0.151 Sum_probs=181.3
Q ss_pred cEEEEcCCCChhHHHHHHHHHHHHCCCCeEEEcCCcccccceeEEeCCeecChhhhhhHHHHHHHHHHhhhhccCCcchH
Q psy15432 109 NVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTKYFWTVYNALHAKRKHAEDMPAY 188 (1255)
Q Consensus 109 ~vIhVtGTnGKgST~a~l~sIL~~~G~k~Gl~tSPhL~~~rERI~InG~~is~~~ft~~~~~v~~~l~~~~~~~~~~p~~ 188 (1255)
++|+||||||||||++|+++||+.+|+....+ +.|. +.... ...
T Consensus 100 ~~IaITGTnGKTTTt~ll~~iL~~~g~~~~~~-------------~gg~-~~~~~-~~~--------------------- 143 (448)
T TIGR01082 100 HSIAVAGTHGKTTTTAMIAVILKEAGLDPTVV-------------VGGL-VKEAG-TNA--------------------- 143 (448)
T ss_pred cEEEEECCCChHHHHHHHHHHHHHcCCCCeEE-------------ECcc-cccCC-ccc---------------------
Confidence 69999999999999999999999999843222 1111 11000 000
Q ss_pred HHHHHHHhhhhhhccCCCEEEEeeccCCccccccccCCccEEEEcCCCcchhh-hcCCCHHHHHHHHHcccCC---Ccee
Q psy15432 189 FKFLTVMSFYVFVKEKPDAVIMEVGIGGRYDNTNIIPNTAVVGITSLGYDHTA-VLGNTIEEITMQKAGIMKP---NCIA 264 (1255)
Q Consensus 189 Fe~Lt~~A~~~F~~~~vD~aVlEvG~GGr~D~tnii~~P~v~vITnIg~DHld-~lG~Tle~Ia~~KagI~k~---g~~~ 264 (1255)
.....|++|+|+++..... . ..+|+++|||||+.||+| +++ |+|+|+.+|..|++. +..+
T Consensus 144 ------------~~~~~~~~V~E~s~~q~~~-~--~~~p~vaVitNI~~DHld~~~~-s~e~y~~aK~~i~~~~~~~~~~ 207 (448)
T TIGR01082 144 ------------RLGSGEYLVAEADESDASF-L--HLQPNVAIVTNIEPDHLDTYGS-SFERLKAAFEKFIHNLPFYGLA 207 (448)
T ss_pred ------------ccCCCCEEEEECCCccchH-h--hccCCEEEEecCChhhcchhcC-CHHHHHHHHHHHHHhCCCCCEE
Confidence 0123599999999764322 2 237999999999999999 665 999999999999964 6678
Q ss_pred eeccCCCchHHHHHHHhhhccCceEEEcC-Cc--------------ceeee--cC---cccccCCCchhHHhhHHHHHHH
Q psy15432 265 VTSANQRGPCKQILLETSRALNCVLLEAP-SI--------------LNYRW--RG---QPLDEDWKSTVQSINISLAIQL 324 (1255)
Q Consensus 265 v~~~~q~~e~~~vl~~~a~~~~~~l~~~~-~~--------------~~~~~--~~---~~i~l~l~G~~q~~Na~lAia~ 324 (1255)
|++. +++...... +.+... ...+... .. ..|.+ .. ..+.++++|.||..|+++|+++
T Consensus 208 V~n~-dd~~~~~~~-~~~~~~-~~~f~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~l~G~hn~~N~~aA~a~ 284 (448)
T TIGR01082 208 VICA-DDPVLRELV-PKATEQ-VITYGGSGEDADYRAENIQQSGAEGKFSVRGKGKLYLEFTLNLPGRHNVLNALAAIAV 284 (448)
T ss_pred EEEC-CCHHHHHHH-hhcCCC-EEEeCCCCCCCcEEEEEEEecCCeEEEEEEECCceEEEEEecCccHhHHHHHHHHHHH
Confidence 8887 555544433 322211 1112111 00 01111 11 1356789999999999999998
Q ss_pred HHHHHHhhccchhhhhHHHHhhhhhccCCCCCCCCCCCCCCccCCCCCCCCccccCCCCCCCCccccccccCCCCCCCCh
Q psy15432 325 AYLWMFRMNKSAELKSVIDKFLAEMRVSSPNETPGGQGHLSSCETPGGQGHLSFSETPGGQGHLTGNQSSLLMGPHFEID 404 (1255)
Q Consensus 325 a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~ 404 (1255)
+..+ +++ +
T Consensus 285 ~~~l-----------------------------------------------------------------------gi~-~ 292 (448)
T TIGR01082 285 ALEL-----------------------------------------------------------------------GID-F 292 (448)
T ss_pred HHHc-----------------------------------------------------------------------CCC-H
Confidence 8664 566 8
Q ss_pred HHHHHHHhcCC-CCCceEEEEe-cCcEEEEccCCCHHHHHHHHHHHHhhhhcccccCccCCCCCCCCCccCCCCCccEEE
Q psy15432 405 PKTYRGIKACV-WPGRVQVIRK-NNFKYFLDGAHTTDSIELCAKWFLRKSEAEASSSRSVSSCPLDPTQSKSSNVIQRIL 482 (1255)
Q Consensus 405 e~i~~gL~~~~-~pGR~e~v~~-~~~~vilDgAHnp~si~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il 482 (1255)
+.+.++|++|+ ++||||++.. +++.||+||||||+++++++++++..... +++++
T Consensus 293 ~~i~~~l~~f~~~~~R~e~~~~~~gv~~i~D~ahn~~~~~a~~~al~~~~~~-----------------------~~ii~ 349 (448)
T TIGR01082 293 EAILRALANFQGVKRRFEILGEFGGVLLIDDYAHHPTEIKATLKAARQGYPD-----------------------KRIVV 349 (448)
T ss_pred HHHHHHHHhCCCCCccceEEEEeCCeEEEEcCCCCHHHHHHHHHHHHHhcCC-----------------------CeEEE
Confidence 99999999999 5899999964 56889999999999999999999875321 26889
Q ss_pred EEe---cCCCCC-hhhhhHHhhccCCCcEEEEcCCCCCCCC
Q psy15432 483 VFN---VTGERD-PTKLLSPLLQSNQFEYILVTPNILTNES 519 (1255)
Q Consensus 483 Vfg---~~~drD-~~~ll~~L~~~~~~d~vi~t~~~~~~~~ 519 (1255)
||| ..++|+ .+.+++.+ . .+|.+++++..+..+.
T Consensus 350 i~g~~~~~r~k~~~~~~~~~l-~--~~d~v~l~~~~~~~~~ 387 (448)
T TIGR01082 350 VFQPHRYSRTRDLFDDFAKVL-S--DADELILLDIYAAGEE 387 (448)
T ss_pred EECCCCCccHHHHHHHHHHHH-H--hCCEEEEecccCCCCC
Confidence 997 455555 35677777 3 3899999987665554
|
UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081. |
| >TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.2e-30 Score=305.81 Aligned_cols=245 Identities=19% Similarity=0.219 Sum_probs=179.6
Q ss_pred ccEEEEcCCCChhHHHHHHHHHHHHCCCCeEEEcCCcccccceeEEeCCeecChhhhhhHHHHHHHHHHhhhhccCCcch
Q psy15432 108 LNVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTKYFWTVYNALHAKRKHAEDMPA 187 (1255)
Q Consensus 108 l~vIhVtGTnGKgST~a~l~sIL~~~G~k~Gl~tSPhL~~~rERI~InG~~is~~~ft~~~~~v~~~l~~~~~~~~~~p~ 187 (1255)
.++|+||||||||||++|+.+||+.+|+++.+-++- |.|
T Consensus 102 ~~~I~VTGT~GKTTTt~li~~iL~~~g~~~~~~gni------------g~~----------------------------- 140 (433)
T TIGR01087 102 LPVVAITGTNGKTTTTSLLYHLLKAAGLKAFLGGNI------------GTP----------------------------- 140 (433)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHHhcCCCeEEECcc------------CHH-----------------------------
Confidence 379999999999999999999999999886544321 111
Q ss_pred HHHHHHHHhhhhhhccCCCEEEEeeccCCccccccccCCccEEEEcCCCcchhhhcCCCHHHHHHHHHcccCCC---cee
Q psy15432 188 YFKFLTVMSFYVFVKEKPDAVIMEVGIGGRYDNTNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIMKPN---CIA 264 (1255)
Q Consensus 188 ~Fe~Lt~~A~~~F~~~~vD~aVlEvG~GGr~D~tnii~~P~v~vITnIg~DHld~lG~Tle~Ia~~KagI~k~g---~~~ 264 (1255)
.+..+ ...+.|++|+|+|+. .++.++.+ +|+++|||||+.||+|+|| |+++|+.+|++|++.. ..+
T Consensus 141 ---~~~~~-----~~~~~~~~V~E~~~~-~l~~~~~~-~p~iaViTNI~~DHld~~g-s~e~~~~~K~~i~~~~~~~~~~ 209 (433)
T TIGR01087 141 ---ALEVL-----DQEGAELYVLELSSF-QLETTESL-RPEIALILNISEDHLDWHG-SFEDYVAAKLKIFARQTEGDVA 209 (433)
T ss_pred ---HHHHH-----hccCCCEEEEEcChh-HhcCCccc-CCCEEEEecCChhHhcccC-CHHHHHHHHHHHHhcCCCCCEE
Confidence 01111 114689999999965 45677776 7999999999999999999 9999999999999753 467
Q ss_pred eeccCCCchHHHHHHHhhhccCceEEEcCCc----ceee-------ecCcccccCCCchhHHhhHHHHHHHHHHHHHhhc
Q psy15432 265 VTSANQRGPCKQILLETSRALNCVLLEAPSI----LNYR-------WRGQPLDEDWKSTVQSINISLAIQLAYLWMFRMN 333 (1255)
Q Consensus 265 v~~~~q~~e~~~vl~~~a~~~~~~l~~~~~~----~~~~-------~~~~~i~l~l~G~~q~~Na~lAia~a~~~l~~~~ 333 (1255)
|++. +++ ....+. ...++.++.++.. ..+. +....+.++++|.||+.|+++|++++..+
T Consensus 210 i~n~-dd~-~~~~~~---~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~hn~~Na~aAia~a~~l----- 279 (433)
T TIGR01087 210 VLNA-DDP-RFARLA---QKSKAQVIWFSVEKDAERGLCIRDGGLYLKPNDLEGSLLGLHNAENILAAIALAKSL----- 279 (433)
T ss_pred EEEC-CCH-HHHHhh---hhcCceEEEEeCCccCCCceEEECCEEEEeccccccCCCcHHHHHHHHHHHHHHHHc-----
Confidence 7776 443 322222 2222333332211 0111 11113678999999999999999988765
Q ss_pred cchhhhhHHHHhhhhhccCCCCCCCCCCCCCCccCCCCCCCCccccCCCCCCCCccccccccCCCCCCCChHHHHHHHhc
Q psy15432 334 KSAELKSVIDKFLAEMRVSSPNETPGGQGHLSSCETPGGQGHLSFSETPGGQGHLTGNQSSLLMGPHFEIDPKTYRGIKA 413 (1255)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~e~i~~gL~~ 413 (1255)
|++ ++.+.++|++
T Consensus 280 ------------------------------------------------------------------gi~-~~~i~~~L~~ 292 (433)
T TIGR01087 280 ------------------------------------------------------------------GLN-LEAILEALRS 292 (433)
T ss_pred ------------------------------------------------------------------CCC-HHHHHHHHHh
Confidence 567 8999999999
Q ss_pred CC-CCCceEEEEe-cCcEEEEcc-CCCHHHHHHHHHHHHhhhhcccccCccCCCCCCCCCccCCCCCccEEEEEe-cCCC
Q psy15432 414 CV-WPGRVQVIRK-NNFKYFLDG-AHTTDSIELCAKWFLRKSEAEASSSRSVSSCPLDPTQSKSSNVIQRILVFN-VTGE 489 (1255)
Q Consensus 414 ~~-~pGR~e~v~~-~~~~vilDg-AHnp~si~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilVfg-~~~d 489 (1255)
|. ||||||++.. +++.||+|+ ||||+|+.++++.+. . ++++||| ...+
T Consensus 293 f~g~~~R~e~v~~~~g~~~idD~~atn~~a~~~al~~~~-----~-----------------------~ii~I~Gg~~~~ 344 (433)
T TIGR01087 293 FKGLPHRLEYVGQKNGVHFYNDSKATNVHATLAALSAFD-----N-----------------------PVILIVGGDDKG 344 (433)
T ss_pred CCCCCCceEEEEEECCEEEEEcCCCCCHHHHHHHHHhCC-----C-----------------------CEEEEEcCCCCC
Confidence 98 9999999975 567899995 999999999988662 1 5788996 4566
Q ss_pred CChhhhhHHhhccCCCcEEEEc
Q psy15432 490 RDPTKLLSPLLQSNQFEYILVT 511 (1255)
Q Consensus 490 rD~~~ll~~L~~~~~~d~vi~t 511 (1255)
+|...+.+.+ . ...+.|++.
T Consensus 345 ~d~~~~~~~l-~-~~~~~v~~~ 364 (433)
T TIGR01087 345 ADFSPLAPAA-A-GKVKAVLAI 364 (433)
T ss_pred CCHHHHHHHH-H-hhCCEEEEE
Confidence 7888888877 3 345666653
|
|
| >PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=9e-31 Score=314.01 Aligned_cols=310 Identities=17% Similarity=0.166 Sum_probs=206.9
Q ss_pred chHHHHHHHHHhcCcccccccceEEEecCCCCCccHHHHHHHHHHHCCCCeEEEcCcccccccceeeeCCeecChhhhhh
Q psy15432 699 QVDQVVQYLGHLNITLDDIKKLNVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTK 778 (1255)
Q Consensus 699 ~v~~~~~~L~~Lg~~~~~~~~l~vIhVTGTnGKgST~aml~sILr~~G~rtGl~tSPhL~~~~ERI~InG~pIs~~~f~~ 778 (1255)
.+.++..+.... .+.++|+||||||||||++|+.+||+.+|+++.+-++. |.|+..
T Consensus 90 v~~e~el~~~~~-------~~~~~IaVTGTnGKTTTt~ll~~iL~~~g~~~~~~Gni------------G~p~l~----- 145 (454)
T PRK01368 90 ITSDIDLLFEKS-------KNLKFIAITGTNGKSTTTALISHILNSNGLDYPVAGNI------------GVPALQ----- 145 (454)
T ss_pred eecHHHHHHHHh-------cCCCEEEEECCCcHHHHHHHHHHHHHhcCCCeEEEccC------------CHHHhc-----
Confidence 455655544432 12479999999999999999999999999987655442 433210
Q ss_pred HHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHHhhhcCCCCEEEEecccCCccccccccCCCcEEEEcCCCchhhhhcCCC
Q psy15432 779 YFWTVYNALHAKRKHAEDMPAYFKFLTVMSFYVFVKEKPDAVIMEVGIGGRYDNTNIIPNTAVVGITSLGYDHTAVLGNT 858 (1255)
Q Consensus 779 ~~~~v~~~l~~~~~~~~~~pt~Fe~lT~mAf~~F~~~~vD~aVlEVG~GGr~D~TNvi~~P~VavITnIg~DHl~~LG~T 858 (1255)
...+.|++|+|+|+... +.+..+ +|++++||||+.||+++|| |
T Consensus 146 ----------------------------------~~~~~~~~VlE~ss~ql-~~~~~~-~P~iavitNI~~DHLd~~~-s 188 (454)
T PRK01368 146 ----------------------------------AKASKDGYVLELSSFQL-DLVKTF-TAKIAVLLNITPDHLDRHQ-D 188 (454)
T ss_pred ----------------------------------ccCCCCEEEEEcCchhh-cccccc-CCCEEEEecCChhHhhccC-C
Confidence 12346999999999864 334434 7999999999999999999 9
Q ss_pred HHHHHHHHhcccc---CCceEEEccCCCChhHHHHHHHhhhcCCeEEEcCCc----cc---------eec--c---CCcc
Q psy15432 859 IEEITMQKAGIMK---PNCIAVTSANQRGPCKQILLETSRALNCVLLEAPSI----LN---------YRW--R---GQPL 917 (1255)
Q Consensus 859 leeIA~~KagI~K---~g~~av~~~~qd~~~~~vl~~~A~~~~~~l~~~~~~----~~---------~~~--~---~~~v 917 (1255)
+|+|+.+|..||+ ++..+|++. +++.......+......++++.++.. .. +.+ . ...+
T Consensus 189 ~e~y~~aK~~i~~~~~~~~~~Vln~-Dd~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (454)
T PRK01368 189 MDGYIAAKSKIFDRMDKDSYAVINI-DNDYCREIFIKLQQEQRIKLIPFSVTKILENGISVVDDKISDNFFDDISFKLPF 267 (454)
T ss_pred HHHHHHHHHHHHhcCCCCCEEEEeC-CcHHHHHHHHHhhcccCceEEEEeCCcccCCCcEEECCEEEEEecCCcceEEEe
Confidence 9999999999995 466788887 44433333222111112233322210 00 011 0 1134
Q ss_pred ccCCCchhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHhhhhhcCCCCCCCCCCCCCCcCCCCCCCCCccccCCCCCC
Q psy15432 918 DEDWKSTVQSINISLAIQLAYLWMFRMNKSAELKSVIDKFLAEMRVSSPNETPGGQGHLSSCETPGGQGHLSFSETPGGQ 997 (1255)
Q Consensus 918 ~l~L~G~hq~~Na~lAiala~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 997 (1255)
.++++|.||..|+++|++++..
T Consensus 268 ~~~l~G~hn~~Na~aAia~~~~---------------------------------------------------------- 289 (454)
T PRK01368 268 NKNLQGKHNCENIAASYAVAKI---------------------------------------------------------- 289 (454)
T ss_pred cCCCCchhhHHHHHHHHHHHHH----------------------------------------------------------
Confidence 5678999999999999998775
Q ss_pred CCcccccccccCCCCCCCC-HHHHHHHhcCC-CCCcEEEEee-cCcEEEEE-cCcCHHHHHHHHHHHHhhhccccCCCcc
Q psy15432 998 GHLTGNQSSLLMGPHFEID-PKTYRGIKACV-WPGRVQVIRK-NNFKYFLD-GAHTTDSIELCAKWFLRKSEAEANPTQS 1073 (1255)
Q Consensus 998 ~~~~~n~~~~~~~~~~~i~-~~i~~gL~~~~-~pGR~E~v~~-~~~~vilD-gAHNP~S~~a~l~~l~~~~~~~~~~~~~ 1073 (1255)
++++ +.+.++|++|. ||||||++.. +++.||+| +||||+|+.++++.|+
T Consensus 290 ---------------lgi~~~~i~~~L~~F~~~~~Rle~v~~~~gv~~i~DS~atN~~a~~~al~~~~------------ 342 (454)
T PRK01368 290 ---------------IGVEPKKILESISSFQSLPHRMQYIGSINNISFYNDSKATNAISAVQSIKALD------------ 342 (454)
T ss_pred ---------------cCCCHHHHHHHHHhCCCCCcceEEEEEECCeEEEECCCCCCHHHHHHHHHhcC------------
Confidence 4566 67999999988 9999999986 57779999 9999999999998772
Q ss_pred cCCCCCcEEEEEecCCCCChhhhhhhhhc-CCCCcEEEEcCCCCcccccccCCCCCccccc-ccccccCCHHHHHHHHHH
Q psy15432 1074 KSSNVIQRILVFNVTGERDPTKLLSPLLQ-SNQFEYILVTPNILTNEIRWRGQPLDEDWKS-TVQSINISLAIQLAYLWM 1151 (1255)
Q Consensus 1074 ~~~~~~~~vlVfg~~~drD~~~ll~~L~~-~~~~d~vi~t~~~~~~~~~~~~~~~~~~~~~-d~~~~~~~~~~~~~~~~~ 1151 (1255)
++++|+|.+ |...+++.|.. -.....+++.+.....-.. .+.. .......+.++.++.+..
T Consensus 343 ------~i~lI~Gg~---dk~~~~~~L~~~~~~v~~v~~~g~~~~~l~~--------~~~~~~~~~~~~~l~~Av~~a~~ 405 (454)
T PRK01368 343 ------NIYWLAGGI---PKEGGIEEIKPYFSKIKKAYFYGQAKEIFAN--------TAKNIVDFVICDNLEQAFDLAYK 405 (454)
T ss_pred ------CeEEEeccc---CCCCCHHHHHHHHHhhcEEEEECcCHHHHHH--------HhhcCCCEEEcCCHHHHHHHHHH
Confidence 368888866 23444454421 0123334443322211111 1211 012233467888887766
Q ss_pred HcCC-----CceEEeecCCCCCCccc
Q psy15432 1152 FRMN-----KSAELKRNQSSLPMGPH 1172 (1255)
Q Consensus 1152 ~~~~-----~~~~l~~~~~~~~~~~~ 1172 (1255)
...+ +.|.|..++.|++|.+-
T Consensus 406 ~a~~g~~~~d~VLlSPacaSfD~f~~ 431 (454)
T PRK01368 406 DAVGDNAEVKNILLAPSCSSYDQFKN 431 (454)
T ss_pred HhcCCCCCCCEEEeChhhhccccccC
Confidence 6666 47999999999999843
|
|
| >PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.2e-29 Score=303.75 Aligned_cols=246 Identities=16% Similarity=0.151 Sum_probs=178.0
Q ss_pred cEEEEcCCCChhHHHHHHHHHHHHCCCCeEEEcCCcccccceeEEeCCeecChhhhhhHHHHHHHHHHhhhhccCCcchH
Q psy15432 109 NVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTKYFWTVYNALHAKRKHAEDMPAY 188 (1255)
Q Consensus 109 ~vIhVtGTnGKgST~a~l~sIL~~~G~k~Gl~tSPhL~~~rERI~InG~~is~~~ft~~~~~v~~~l~~~~~~~~~~p~~ 188 (1255)
++|+||||||||||++|+++||++.|+++++.++. |.|++..
T Consensus 122 ~vIaVTGTnGKTTTt~ml~~iL~~~g~~~~~~Gni------------g~p~~~~-------------------------- 163 (473)
T PRK00141 122 TWLAVTGTNGKTTTTAMLAAMMQEGGFAAQAVGNI------------GVPVSAA-------------------------- 163 (473)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHHhcCCcEEEeccC------------ChhHHHH--------------------------
Confidence 69999999999999999999999999998766542 2232200
Q ss_pred HHHHHHHhhhhhhccCCCEEEEeeccCCccccccccCCccEEEEcCCCcchhhhcCCCHHHHHHHHHcccCCCceeeecc
Q psy15432 189 FKFLTVMSFYVFVKEKPDAVIMEVGIGGRYDNTNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIMKPNCIAVTSA 268 (1255)
Q Consensus 189 Fe~Lt~~A~~~F~~~~vD~aVlEvG~GGr~D~tnii~~P~v~vITnIg~DHld~lG~Tle~Ia~~KagI~k~g~~~v~~~ 268 (1255)
+ . ...++|++|+|+|+.+. +-+..+ +|+++|||||+.||+|+|| |+|+|+.+|+.|++. ..+|++.
T Consensus 164 ---l--~-----~~~~~~~~V~E~ss~~l-~~~~~~-~pdiaViTNi~~dHLd~~~-s~e~y~~aK~~l~~~-~~~vln~ 229 (473)
T PRK00141 164 ---L--V-----AQPRIDVLVAELSSFQL-HWSPTL-TPDVGVVLNLAEDHIDWHG-SMRDYAADKAKVLRG-PVAVIGA 229 (473)
T ss_pred ---H--h-----cCCCCCEEEEecCCccc-ccCccc-CCCEEEEcCCChhhccccC-CHHHHHHHHHHHhhC-CEEEEEC
Confidence 0 0 24568999999999975 334444 7999999999999999999 999999999999975 3566766
Q ss_pred CCCchHHHHHHHhhhccCceEEEcCCc--ce--e-----eec--C------cccccCCCchhHHhhHHHHHHHHHHHHHh
Q psy15432 269 NQRGPCKQILLETSRALNCVLLEAPSI--LN--Y-----RWR--G------QPLDEDWKSTVQSINISLAIQLAYLWMFR 331 (1255)
Q Consensus 269 ~q~~e~~~vl~~~a~~~~~~l~~~~~~--~~--~-----~~~--~------~~i~l~l~G~~q~~Na~lAia~a~~~l~~ 331 (1255)
+++... .+...........|..... .. + ... + ..+.++++|.||++|+++|++++..+
T Consensus 230 -Dd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~hn~~Na~aA~a~~~~l--- 304 (473)
T PRK00141 230 -DDEYVV-QLTSAADLSGLIGFTMGEPAAGQVGVRDGELVDNAFGQNVVLASAEGISPAGPAGVLDALAAAAVARSQ--- 304 (473)
T ss_pred -CCHHHH-HHHhhcCCCcEEEEeCCCCCcCcceEECCEEEEecCCCceEEeehhhcCCCcHhHHHHHHHHHHHHHHc---
Confidence 444333 3333221111122322110 00 1 000 1 02357899999999999999988654
Q ss_pred hccchhhhhHHHHhhhhhccCCCCCCCCCCCCCCccCCCCCCCCccccCCCCCCCCccccccccCCCCCCCChHHHHHHH
Q psy15432 332 MNKSAELKSVIDKFLAEMRVSSPNETPGGQGHLSSCETPGGQGHLSFSETPGGQGHLTGNQSSLLMGPHFEIDPKTYRGI 411 (1255)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~e~i~~gL 411 (1255)
+++ .+.+.+||
T Consensus 305 --------------------------------------------------------------------gi~-~~~i~~~l 315 (473)
T PRK00141 305 --------------------------------------------------------------------GVA-PEAIARAL 315 (473)
T ss_pred --------------------------------------------------------------------CCC-HHHHHHHH
Confidence 566 89999999
Q ss_pred hcCCCCC-ceEEEEecCcEEEEcc--CCCHHHHHHHHHHHHhhhhcccccCccCCCCCCCCCccCCCCCccEEEEE-ecC
Q psy15432 412 KACVWPG-RVQVIRKNNFKYFLDG--AHTTDSIELCAKWFLRKSEAEASSSRSVSSCPLDPTQSKSSNVIQRILVF-NVT 487 (1255)
Q Consensus 412 ~~~~~pG-R~e~v~~~~~~vilDg--AHnp~si~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilVf-g~~ 487 (1255)
++++||| |||++...+..+++|+ ||||+|+++++++++ ++++|| |+.
T Consensus 316 ~~~~~~~~R~e~~~~~~~~~iiDdsyahNp~s~~~~l~~l~-----------------------------~~~~i~gG~~ 366 (473)
T PRK00141 316 SSFEVAGHRGQVVAEHGGVTWIDNSKATNPHAADAALAGHE-----------------------------SVVWVAGGQL 366 (473)
T ss_pred hhCCCCCCceEEEEEeCCEEEEEcCCCCCHHHHHHHHHhcC-----------------------------CEEEEecCcc
Confidence 9999887 9999975323456665 999999999988762 468899 778
Q ss_pred CCCChhhhhHHhhccCCCcEEEEc
Q psy15432 488 GERDPTKLLSPLLQSNQFEYILVT 511 (1255)
Q Consensus 488 ~drD~~~ll~~L~~~~~~d~vi~t 511 (1255)
+|||.+.|+..+ +. ..+.+++.
T Consensus 367 kdkd~~~~~~~l-~~-~~~~~~~~ 388 (473)
T PRK00141 367 KGADIDDLIRTH-AP-RIKAAVVL 388 (473)
T ss_pred CCCChHHHHHHH-Hh-hccEEEEE
Confidence 999999999998 43 34555554
|
|
| >PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-29 Score=302.77 Aligned_cols=245 Identities=18% Similarity=0.164 Sum_probs=180.9
Q ss_pred ccEEEEcCCCChhHHHHHHHHHHHHCCCCeEEEcCCcccccceeEEeCCeecChhhhhhHHHHHHHHHHhhhhccCCcch
Q psy15432 108 LNVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTKYFWTVYNALHAKRKHAEDMPA 187 (1255)
Q Consensus 108 l~vIhVtGTnGKgST~a~l~sIL~~~G~k~Gl~tSPhL~~~rERI~InG~~is~~~ft~~~~~v~~~l~~~~~~~~~~p~ 187 (1255)
-++|+||||||||||++|+.+||+.+|+++.+.++. |.|.+.-
T Consensus 108 ~~~I~VTGT~GKTTTt~ll~~iL~~~g~~~~~~Gni------------g~p~~~~------------------------- 150 (447)
T PRK02472 108 APIIGITGSNGKTTTTTLIGEMLKAGGQHALLAGNI------------GYPASEV------------------------- 150 (447)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHHHCCCCeEEEccc------------ChhhHHH-------------------------
Confidence 379999999999999999999999999877554431 2332200
Q ss_pred HHHHHHHHhhhhhhccCCCEEEEeeccCCccccccccCCccEEEEcCCCcchhhhcCCCHHHHHHHHHcccCCCce---e
Q psy15432 188 YFKFLTVMSFYVFVKEKPDAVIMEVGIGGRYDNTNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIMKPNCI---A 264 (1255)
Q Consensus 188 ~Fe~Lt~~A~~~F~~~~vD~aVlEvG~GGr~D~tnii~~P~v~vITnIg~DHld~lG~Tle~Ia~~KagI~k~g~~---~ 264 (1255)
+ . ...+.|++|+|+++.+.. .++.+ +|+++|||||+.||+++|| |+++|+.+|++|+++..+ +
T Consensus 151 ----~-~------~~~~~~~~V~E~ss~~~~-~~~~~-~P~iaVITnI~~DHld~~g-t~e~i~~~K~~i~~~~~~~~~~ 216 (447)
T PRK02472 151 ----A-Q------KATADDTLVMELSSFQLM-GIETF-RPHIAVITNIYPAHLDYHG-TFENYVAAKWNIQKNQTEDDYL 216 (447)
T ss_pred ----H-h------cCCCCCEEEEEcCchhhC-ccccc-CCCEEEEeccChhhhcccC-CHHHHHHHHHHHHhcCCCCCEE
Confidence 0 0 123569999999988654 35565 7999999999999999999 999999999999987554 7
Q ss_pred eeccCCCchHHHHHHHhhhccCceEEEcC--Cc--c-------eeeecCc----ccccCCCchhHHhhHHHHHHHHHHHH
Q psy15432 265 VTSANQRGPCKQILLETSRALNCVLLEAP--SI--L-------NYRWRGQ----PLDEDWKSTVQSINISLAIQLAYLWM 329 (1255)
Q Consensus 265 v~~~~q~~e~~~vl~~~a~~~~~~l~~~~--~~--~-------~~~~~~~----~i~l~l~G~~q~~Na~lAia~a~~~l 329 (1255)
|++. +++.......+ ..+.++.++ .. . .+.+.+. .++++++|.||++|+++|++++..+
T Consensus 217 v~n~-dd~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~hn~~Na~aAia~~~~l- 290 (447)
T PRK02472 217 VINF-DQEEVKELAKQ----TKATVVPFSTTEKVEDGAYIKDGALYFKGEKIMAADDIVLPGSHNLENALAAIAAAKLL- 290 (447)
T ss_pred EEeC-CcHHHHHHHhh----cCceEEEeecCCCCcCceEEECCEEEECCceEEehhhcCCCCHHHHHHHHHHHHHHHHc-
Confidence 7776 55554433222 112222111 00 0 1112111 2368899999999999999988764
Q ss_pred HhhccchhhhhHHHHhhhhhccCCCCCCCCCCCCCCccCCCCCCCCccccCCCCCCCCccccccccCCCCCCCChHHHHH
Q psy15432 330 FRMNKSAELKSVIDKFLAEMRVSSPNETPGGQGHLSSCETPGGQGHLSFSETPGGQGHLTGNQSSLLMGPHFEIDPKTYR 409 (1255)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~e~i~~ 409 (1255)
+++ ++.+.+
T Consensus 291 ----------------------------------------------------------------------gi~-~~~i~~ 299 (447)
T PRK02472 291 ----------------------------------------------------------------------GVS-NEAIRE 299 (447)
T ss_pred ----------------------------------------------------------------------CCC-HHHHHH
Confidence 567 899999
Q ss_pred HHhcCC-CCCceEEEEe-cCcEEEEcc-CCCHHHHHHHHHHHHhhhhcccccCccCCCCCCCCCccCCCCCccEEEEEec
Q psy15432 410 GIKACV-WPGRVQVIRK-NNFKYFLDG-AHTTDSIELCAKWFLRKSEAEASSSRSVSSCPLDPTQSKSSNVIQRILVFNV 486 (1255)
Q Consensus 410 gL~~~~-~pGR~e~v~~-~~~~vilDg-AHnp~si~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilVfg~ 486 (1255)
+|++|. ||||||++.. +++.||+|+ ||||+|+..+++.+ . . ++++|||.
T Consensus 300 ~L~~f~~~~~R~e~~~~~~g~~vi~D~~a~N~~s~~~al~~~----~-~-----------------------~ii~I~g~ 351 (447)
T PRK02472 300 VLSTFSGVKHRLQYVGTIDGRKFYNDSKATNILATQKALSGF----N-Q-----------------------PVVLLAGG 351 (447)
T ss_pred HHHhCCCCCCcceEEEEECCeEEEECCCCCCHHHHHHHHHhC----C-C-----------------------CEEEEECC
Confidence 999998 9999999964 467899996 99999998877654 1 1 68999997
Q ss_pred CC-CCChhhhhHHhhccCCCcEEEEc
Q psy15432 487 TG-ERDPTKLLSPLLQSNQFEYILVT 511 (1255)
Q Consensus 487 ~~-drD~~~ll~~L~~~~~~d~vi~t 511 (1255)
.. ++|++++++.+ . . +|.|++.
T Consensus 352 ~~~~~~~~~l~~~l-~-~-~~~v~~~ 374 (447)
T PRK02472 352 LDRGNEFDELVPYL-K-N-VKAMVVF 374 (447)
T ss_pred CCCCCCHHHHHHHH-h-c-cCEEEEE
Confidence 64 68999999988 3 3 7888875
|
|
| >PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.1e-30 Score=307.13 Aligned_cols=249 Identities=16% Similarity=0.113 Sum_probs=177.9
Q ss_pred cEEEEcCCCChhHHHHHHHHHHHHCCCCeEEEcCCcccccceeEEeCCeecChhhhhhHHHHHHHHHHhhhhccCCcchH
Q psy15432 109 NVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTKYFWTVYNALHAKRKHAEDMPAY 188 (1255)
Q Consensus 109 ~vIhVtGTnGKgST~a~l~sIL~~~G~k~Gl~tSPhL~~~rERI~InG~~is~~~ft~~~~~v~~~l~~~~~~~~~~p~~ 188 (1255)
++|+||||||||||++|+.+||+.+|.++.+.++- |.|+.+
T Consensus 116 ~~IaITGTnGKTTTt~ll~~iL~~~g~~~~~~Gni------------G~p~~~--------------------------- 156 (468)
T PRK04690 116 GTVCVTGTKGKSTTTALLAHLLRAAGHRTALVGNI------------GVPLLE--------------------------- 156 (468)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHHhcCCcEEEcCCC------------CcchHH---------------------------
Confidence 79999999999999999999999999887665542 333310
Q ss_pred HHHHHHHhhhhhhccCCCEEEEeeccCCccccccccCCccEEEEcCCCcchhhhcCCCHHHHHHHHHcccCCCc--eeee
Q psy15432 189 FKFLTVMSFYVFVKEKPDAVIMEVGIGGRYDNTNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIMKPNC--IAVT 266 (1255)
Q Consensus 189 Fe~Lt~~A~~~F~~~~vD~aVlEvG~GGr~D~tnii~~P~v~vITnIg~DHld~lG~Tle~Ia~~KagI~k~g~--~~v~ 266 (1255)
.+. ...+.|++|+|+|+...-+..-...+|+++|||||+.||+++|| ++++|..+|++||+... .+|+
T Consensus 157 --~~~-------~~~~~~~~VlE~ss~q~~~~~~~~~~P~iaVItNI~~DHld~~g-s~e~y~~aK~~i~~~~~~~~~v~ 226 (468)
T PRK04690 157 --VLA-------PQPAPEYWAIELSSYQTGDVARSGARPELAVVLNLFPEHLDWHG-GEARYYRDKLSLVTEGRPRIALL 226 (468)
T ss_pred --Hhc-------cCCCCcEEEEEecCCcccccccccCCCCEEEEcCCCHHHhcccC-CHHHHHHHHHHHHhCCCCCeEEE
Confidence 000 12356999999999854333221237999999999999999999 99999999999997653 3555
Q ss_pred ccCCCchHHHHHHHhhhccCceEEEcCCc------ceeeecC-----cccccCCCchhHHhhHHHHHHHHHHHHHhhccc
Q psy15432 267 SANQRGPCKQILLETSRALNCVLLEAPSI------LNYRWRG-----QPLDEDWKSTVQSINISLAIQLAYLWMFRMNKS 335 (1255)
Q Consensus 267 ~~~q~~e~~~vl~~~a~~~~~~l~~~~~~------~~~~~~~-----~~i~l~l~G~~q~~Na~lAia~a~~~l~~~~~~ 335 (1255)
+. +++... .+.. ....++.++.. ..+.+.+ ..+.+++.|.||..|+++|++++..+
T Consensus 227 n~-dd~~~~-~~~~----~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~h~~~Na~~A~a~~~~l------- 293 (468)
T PRK04690 227 NA-ADPRLA-ALQL----PDSEVVWFNHPDGWHVRGDVVYRGEQALFDTALVPLPGRHNRGNLCAVLAALEAL------- 293 (468)
T ss_pred eC-ccHHHH-HHhc----CCCeEEEeeCCccceecceEEEcCCceEEeeccccCccHhhHHHHHHHHHHHHHc-------
Confidence 65 444332 2221 11222222110 0111111 12467899999999999999988754
Q ss_pred hhhhhHHHHhhhhhccCCCCCCCCCCCCCCccCCCCCCCCccccCCCCCCCCccccccccCCCCCCCChHHHHHHHhcCC
Q psy15432 336 AELKSVIDKFLAEMRVSSPNETPGGQGHLSSCETPGGQGHLSFSETPGGQGHLTGNQSSLLMGPHFEIDPKTYRGIKACV 415 (1255)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~e~i~~gL~~~~ 415 (1255)
+++ ++.+.++|+++.
T Consensus 294 ----------------------------------------------------------------gi~-~~~i~~~l~~~~ 308 (468)
T PRK04690 294 ----------------------------------------------------------------GLD-AVALAPAAAGFR 308 (468)
T ss_pred ----------------------------------------------------------------CCC-HHHHHHHHHhCC
Confidence 556 899999999996
Q ss_pred -CCCceEEEEec-CcEEEEc-cCCCHHHHHHHHHHHHhhhhcccccCccCCCCCCCCCccCCCCCccEEEEEec-CCCCC
Q psy15432 416 -WPGRVQVIRKN-NFKYFLD-GAHTTDSIELCAKWFLRKSEAEASSSRSVSSCPLDPTQSKSSNVIQRILVFNV-TGERD 491 (1255)
Q Consensus 416 -~pGR~e~v~~~-~~~vilD-gAHnp~si~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilVfg~-~~drD 491 (1255)
||||||++... ++.||.| +||||+|++++++.+. . +++++|||. ..++|
T Consensus 309 ~~~gR~e~~~~~~g~~iidDs~ahNp~a~~~al~~~~----~-----------------------~~i~~i~Gg~~k~kd 361 (468)
T PRK04690 309 PLPNRLQELGSRDGITYVNDSISTTPHASLAALDCFA----G-----------------------RRVALLVGGHDRGLD 361 (468)
T ss_pred CCCCCcEEEEccCCeEEEEeCCCCCHHHHHHHHHhcc----C-----------------------CcEEEEEcCCCCCCC
Confidence 99999999864 6667777 5999999999876542 1 168999996 57889
Q ss_pred hhhhhHHhhccCCCcEEEEcC
Q psy15432 492 PTKLLSPLLQSNQFEYILVTP 512 (1255)
Q Consensus 492 ~~~ll~~L~~~~~~d~vi~t~ 512 (1255)
++.|++.+ .....+.++++.
T Consensus 362 ~~~l~~~l-~~~~~~~v~~~g 381 (468)
T PRK04690 362 WTDFAAHM-AQRAPLEIVTMG 381 (468)
T ss_pred HHHHHHHH-HhccCeEEEEeC
Confidence 99999999 332136666654
|
|
| >TIGR01082 murC UDP-N-acetylmuramate--alanine ligase | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-29 Score=304.10 Aligned_cols=303 Identities=15% Similarity=0.139 Sum_probs=203.9
Q ss_pred eEEEecCCCCCccHHHHHHHHHHHCCCCeEEEcCcccccccceeeeCCeecChhhhhhHHHHHHHHHHHHhhcCCCCCcH
Q psy15432 721 NVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTKYFWTVYNALHAKRKHAEDMPAY 800 (1255)
Q Consensus 721 ~vIhVTGTnGKgST~aml~sILr~~G~rtGl~tSPhL~~~~ERI~InG~pIs~~~f~~~~~~v~~~l~~~~~~~~~~pt~ 800 (1255)
++|+||||||||||++|+++||+.+|++...+..-. + |.+....
T Consensus 100 ~~IaITGTnGKTTTt~ll~~iL~~~g~~~~~~~gg~-------~---~~~~~~~-------------------------- 143 (448)
T TIGR01082 100 HSIAVAGTHGKTTTTAMIAVILKEAGLDPTVVVGGL-------V---KEAGTNA-------------------------- 143 (448)
T ss_pred cEEEEECCCChHHHHHHHHHHHHHcCCCCeEEECcc-------c---ccCCccc--------------------------
Confidence 699999999999999999999999998432221100 0 1111100
Q ss_pred HHHHHHHHHHhhhcCCCCEEEEecccCCccccccccCCCcEEEEcCCCchhhhhcCCCHHHHHHHHhccccC---CceEE
Q psy15432 801 FKFLTVMSFYVFVKEKPDAVIMEVGIGGRYDNTNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIMKP---NCIAV 877 (1255)
Q Consensus 801 Fe~lT~mAf~~F~~~~vD~aVlEVG~GGr~D~TNvi~~P~VavITnIg~DHl~~LG~TleeIA~~KagI~K~---g~~av 877 (1255)
.....|++|+|++...... . ..+|+++|||||+.||++++++|+|+|+.+|.+|++. +..+|
T Consensus 144 ------------~~~~~~~~V~E~s~~q~~~--~-~~~p~vaVitNI~~DHld~~~~s~e~y~~aK~~i~~~~~~~~~~V 208 (448)
T TIGR01082 144 ------------RLGSGEYLVAEADESDASF--L-HLQPNVAIVTNIEPDHLDTYGSSFERLKAAFEKFIHNLPFYGLAV 208 (448)
T ss_pred ------------ccCCCCEEEEECCCccchH--h-hccCCEEEEecCChhhcchhcCCHHHHHHHHHHHHHhCCCCCEEE
Confidence 1123599999998763322 2 2379999999999999994444999999999999964 77889
Q ss_pred EccCCCChhHHHHHHHhhhcCCeEEEcCC-----------------ccceec--cC---CccccCCCchhHHHHHHHHHH
Q psy15432 878 TSANQRGPCKQILLETSRALNCVLLEAPS-----------------ILNYRW--RG---QPLDEDWKSTVQSINISLAIQ 935 (1255)
Q Consensus 878 ~~~~qd~~~~~vl~~~A~~~~~~l~~~~~-----------------~~~~~~--~~---~~v~l~L~G~hq~~Na~lAia 935 (1255)
++. +++...... +.+.. ....+.. ...+.+ .+ ..+.++++|.||..|+++|++
T Consensus 209 ~n~-dd~~~~~~~-~~~~~---~~~~f~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~l~G~hn~~N~~aA~a 283 (448)
T TIGR01082 209 ICA-DDPVLRELV-PKATE---QVITYGGSGEDADYRAENIQQSGAEGKFSVRGKGKLYLEFTLNLPGRHNVLNALAAIA 283 (448)
T ss_pred EEC-CCHHHHHHH-hhcCC---CEEEeCCCCCCCcEEEEEEEecCCeEEEEEEECCceEEEEEecCccHhHHHHHHHHHH
Confidence 987 454443332 32221 1111110 000111 11 125678999999999999999
Q ss_pred HHHHHHHhhcchhhhhhHHHHHhhhhhcCCCCCCCCCCCCCCcCCCCCCCCCccccCCCCCCCCcccccccccCCCCCCC
Q psy15432 936 LAYLWMFRMNKSAELKSVIDKFLAEMRVSSPNETPGGQGHLSSCETPGGQGHLSFSETPGGQGHLTGNQSSLLMGPHFEI 1015 (1255)
Q Consensus 936 la~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~i 1015 (1255)
++.. +|+
T Consensus 284 ~~~~-------------------------------------------------------------------------lgi 290 (448)
T TIGR01082 284 VALE-------------------------------------------------------------------------LGI 290 (448)
T ss_pred HHHH-------------------------------------------------------------------------cCC
Confidence 8875 456
Q ss_pred C-HHHHHHHhcCC-CCCcEEEEee-cCcEEEEEcCcCHHHHHHHHHHHHhhhccccCCCcccCCCCCcEEEEEe---cCC
Q psy15432 1016 D-PKTYRGIKACV-WPGRVQVIRK-NNFKYFLDGAHTTDSIELCAKWFLRKSEAEANPTQSKSSNVIQRILVFN---VTG 1089 (1255)
Q Consensus 1016 ~-~~i~~gL~~~~-~pGR~E~v~~-~~~~vilDgAHNP~S~~a~l~~l~~~~~~~~~~~~~~~~~~~~~vlVfg---~~~ 1089 (1255)
+ +.+.++|++|+ +|||||++.. +++++|+||||||+++++++++++.... .+++++||| .++
T Consensus 291 ~~~~i~~~l~~f~~~~~R~e~~~~~~gv~~i~D~ahn~~~~~a~~~al~~~~~------------~~~ii~i~g~~~~~r 358 (448)
T TIGR01082 291 DFEAILRALANFQGVKRRFEILGEFGGVLLIDDYAHHPTEIKATLKAARQGYP------------DKRIVVVFQPHRYSR 358 (448)
T ss_pred CHHHHHHHHHhCCCCCccceEEEEeCCeEEEEcCCCCHHHHHHHHHHHHHhcC------------CCeEEEEECCCCCcc
Confidence 6 67999999999 6899999964 4678999999999999999999987531 146789997 555
Q ss_pred CCCh-hhhhhhhhcCCCCcEEEEcCCCCcccccccCCCCC---cccccc---cccccCCHHHHHHHHHHHcCCCceEEee
Q psy15432 1090 ERDP-TKLLSPLLQSNQFEYILVTPNILTNEIRWRGQPLD---EDWKST---VQSINISLAIQLAYLWMFRMNKSAELKR 1162 (1255)
Q Consensus 1090 drD~-~~ll~~L~~~~~~d~vi~t~~~~~~~~~~~~~~~~---~~~~~d---~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 1162 (1255)
+|+. +.+.+.+ . . +|.+++++..+..+.+..+.+.. ..+... ......+.++.+..++....+++++|+-
T Consensus 359 ~k~~~~~~~~~l-~-~-~d~v~l~~~~~~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~a~~~a~~~a~~gD~VLl~ 435 (448)
T TIGR01082 359 TRDLFDDFAKVL-S-D-ADELILLDIYAAGEEPINGIDGKSLARKITQLGKIEPYFVPDLAELVEFLAAVLQSGDLILTM 435 (448)
T ss_pred HHHHHHHHHHHH-H-h-CCEEEEecccCCCCCCCCCCCHHHHHHHHhhcCCCceEEeCCHHHHHHHHHHhcCCCCEEEEE
Confidence 5553 5667766 3 3 89999887544332221111111 112111 1112347888888888888888999998
Q ss_pred cCCCC
Q psy15432 1163 NQSSL 1167 (1255)
Q Consensus 1163 ~~~~~ 1167 (1255)
|.++.
T Consensus 436 G~g~~ 440 (448)
T TIGR01082 436 GAGDI 440 (448)
T ss_pred CCCCH
Confidence 88754
|
UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081. |
| >PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.9e-29 Score=301.66 Aligned_cols=293 Identities=14% Similarity=0.096 Sum_probs=203.6
Q ss_pred eEEEecCCCCCccHHHHHHHHHHHCCCCeEEEcCcccccccceeeeCCeecChhhhhhHHHHHHHHHHHHhhcCCCCCcH
Q psy15432 721 NVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTKYFWTVYNALHAKRKHAEDMPAY 800 (1255)
Q Consensus 721 ~vIhVTGTnGKgST~aml~sILr~~G~rtGl~tSPhL~~~~ERI~InG~pIs~~~f~~~~~~v~~~l~~~~~~~~~~pt~ 800 (1255)
++|+||||||||||++|+++||+.+|.++++-++. |.|.. .
T Consensus 109 ~~I~VTGTnGKTTTt~ll~~iL~~~g~~~~~~gni------------G~~~~---------------~------------ 149 (438)
T PRK04663 109 PVIAITGSNGKSTVTDLTGVMAKAAGVKVAVGGNI------------GVPAL---------------D------------ 149 (438)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHHHCCCCEEEEccc------------CHHHH---------------h------------
Confidence 79999999999999999999999999987654431 33310 0
Q ss_pred HHHHHHHHHHhhhcCCCCEEEEecccCCccccccccCCCcEEEEcCCCchhhhhcCCCHHHHHHHHhccccCCceEEEcc
Q psy15432 801 FKFLTVMSFYVFVKEKPDAVIMEVGIGGRYDNTNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIMKPNCIAVTSA 880 (1255)
Q Consensus 801 Fe~lT~mAf~~F~~~~vD~aVlEVG~GGr~D~TNvi~~P~VavITnIg~DHl~~LG~TleeIA~~KagI~K~g~~av~~~ 880 (1255)
....+.|++|+|+|+.+. +.+..+ +|+++|||||+.||+++|| |+|+|+.+|..||+....+|++.
T Consensus 150 -----------~~~~~~~~~V~E~ss~~l-~~~~~~-~p~iavitNi~~dHld~~g-s~e~y~~aK~~i~~~~~~~v~n~ 215 (438)
T PRK04663 150 -----------LLEQDAELYVLELSSFQL-ETTSSL-KLKAAAFLNLSEDHMDRYQ-GMEDYRQAKLRIFDHAELAVVNR 215 (438)
T ss_pred -----------hhcCCCCEEEEEcChhhh-ccCccc-CCCEEEEecCChhhCcccC-CHHHHHHHHHHHHhCCCEEEEeC
Confidence 134467999999999864 234444 7999999999999999999 99999999999998766788887
Q ss_pred CCCChhHHHHHHHhhhcCCeEEEcCC-----------ccceecc-CC----ccccCCCchhHHHHHHHHHHHHHHHHHhh
Q psy15432 881 NQRGPCKQILLETSRALNCVLLEAPS-----------ILNYRWR-GQ----PLDEDWKSTVQSINISLAIQLAYLWMFRM 944 (1255)
Q Consensus 881 ~qd~~~~~vl~~~A~~~~~~l~~~~~-----------~~~~~~~-~~----~v~l~L~G~hq~~Na~lAiala~~~l~~~ 944 (1255)
+|+...... . .++++.++. ...+... +. .+.++++|.||++|+++|++++..
T Consensus 216 -dd~~~~~~~-~-----~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~hNv~NalaAia~a~~----- 283 (438)
T PRK04663 216 -DDKQTYPDH-A-----ELQLVTFGFDQQDFGLAQHQGREWLADNGQPVLASAELKLVGRHNVANVLVVLALLDA----- 283 (438)
T ss_pred -CCHHHHhhh-c-----CCcEEEEecCCCCCCeEecCCeEEEEeCCceeeehhhcCCcchhhHHHHHHHHHHHHH-----
Confidence 443222111 1 122222210 0011111 11 367889999999999999998875
Q ss_pred cchhhhhhHHHHHhhhhhcCCCCCCCCCCCCCCcCCCCCCCCCccccCCCCCCCCcccccccccCCCCCCCC-HHHHHHH
Q psy15432 945 NKSAELKSVIDKFLAEMRVSSPNETPGGQGHLSSCETPGGQGHLSFSETPGGQGHLTGNQSSLLMGPHFEID-PKTYRGI 1023 (1255)
Q Consensus 945 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~i~-~~i~~gL 1023 (1255)
+|++ +++.++|
T Consensus 284 --------------------------------------------------------------------lGi~~~~i~~~L 295 (438)
T PRK04663 284 --------------------------------------------------------------------AGVDYRKALDAL 295 (438)
T ss_pred --------------------------------------------------------------------cCCCHHHHHHHH
Confidence 4666 6799999
Q ss_pred hcCC-CCCcEEEEee-cCcEEEEE-cCcCHHHHHHHHHHHHhhhccccCCCcccCCCCCcEEEEEecCC-CCChhhhhhh
Q psy15432 1024 KACV-WPGRVQVIRK-NNFKYFLD-GAHTTDSIELCAKWFLRKSEAEANPTQSKSSNVIQRILVFNVTG-ERDPTKLLSP 1099 (1255)
Q Consensus 1024 ~~~~-~pGR~E~v~~-~~~~vilD-gAHNP~S~~a~l~~l~~~~~~~~~~~~~~~~~~~~~vlVfg~~~-drD~~~ll~~ 1099 (1255)
++|+ +|||||++.. +++.+|.| +++||+|+.++++.+.. .+++++|+|.+. ..|.+.+.+.
T Consensus 296 ~~f~g~~~R~e~v~~~~g~~~idDs~~tn~~s~~~Al~~~~~---------------~~~~i~IlGg~~~~~~~~~l~~~ 360 (438)
T PRK04663 296 KSYTGLTHRCQVVADNHGIKWVNDSKATNVASTLAALSGLEI---------------EGKLYLLVGGVGKGADFSPLKPV 360 (438)
T ss_pred HhCCCCCCceEEeeeeCCcEEEeCCCcCCHHHHHHHHHhccc---------------CCcEEEEECCccCCCCHHHHHHH
Confidence 9999 9999999975 46666666 79999999999997641 136899999774 3567766665
Q ss_pred hhcCCCCcEEEEcCCCCcccccccCCCCCcccccccccccCCHHHHHHHHHHHcCCCce-EEeecCCCCCCcccc
Q psy15432 1100 LLQSNQFEYILVTPNILTNEIRWRGQPLDEDWKSTVQSINISLAIQLAYLWMFRMNKSA-ELKRNQSSLPMGPHF 1173 (1255)
Q Consensus 1100 L~~~~~~d~vi~t~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~ 1173 (1255)
+ .... +.+++.+.......... ....+..+.++.++.+.....+.++ .+..++.|++|-+-|
T Consensus 361 ~-~~~~-~~vi~~G~~~~~~~~~~----------~~~~~~~~~e~av~~~~~~~~~gd~VLlsp~~as~d~f~~~ 423 (438)
T PRK04663 361 L-ATLN-LQLCCFGEDGDQFMPLH----------PSARRFDTMEDAIESISPQLKSGDMVMLSPACASFDQFKNF 423 (438)
T ss_pred H-HhhC-cEEEEECCCHHHHHHHh----------ccCeecCCHHHHHHHHHHhCCCCCEEEECcccccccCcCCH
Confidence 5 3222 46777665432211110 0112334788888888765555544 455588999887433
|
|
| >COG0770 MurF UDP-N-acetylmuramyl pentapeptide synthase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.8e-29 Score=296.81 Aligned_cols=337 Identities=18% Similarity=0.184 Sum_probs=242.7
Q ss_pred eccccccccccccCCCceeEeecccccCCcccccccCCCCCCCcHHHHHHHHHhcchhHHHHHhhhcCCCcc-ccc--cc
Q psy15432 10 KELKLNKDAHRKTLPDKTEVHHGGYKHGAVTPHASRSNKEIPQSYVDAIKQLNTLQSNIRTIRESKLRKDPV-EMQ--AV 86 (1255)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~eai~~L~~l~~~~~~~~~~~~~~~~~-~~~--~~ 86 (1255)
..++.+.-++|++.|+..|+...|-+-+++.+......++..-. +..+..+. .-. ..
T Consensus 22 ~~~~~v~~Dsr~v~~g~lF~al~G~~~Dgh~fi~~A~~~GA~a~--------------------~v~r~~~~~~~~~~~~ 81 (451)
T COG0770 22 VVVSGVSIDSRKVKPGDLFVALKGERFDGHDFIEQALAAGAAAV--------------------LVARPVLPPAIPLVVL 81 (451)
T ss_pred cceeeEEeecccCCCCceeEEccCccccccchHHHHHhcCCEEE--------------------EEecCcCCcccccceE
Confidence 35677888999999999999999999999887544222211100 00011000 000 24
Q ss_pred chHHHHHHHHHhcCCccCCCCccEEEEcCCCChhHHHHHHHHHHHHCCCCeEEEcCCcccccceeEEeCCeecChhhhhh
Q psy15432 87 QVDQVVQYLGHLNITLDDIKKLNVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTK 166 (1255)
Q Consensus 87 ~l~~~~~~L~~Lg~~~~~~~~l~vIhVtGTnGKgST~a~l~sIL~~~G~k~Gl~tSPhL~~~rERI~InG~~is~~~ft~ 166 (1255)
-+.++.++|++|+...++..+.++|+|||++|||||..|+++||+..|. .+.||+ ++|.-| |.|.+
T Consensus 82 ~V~d~~~al~~la~~~~~~~~~kvIaITGS~GKTTTKe~la~iL~~~~~---v~~t~g--n~Nn~i---GlPlt------ 147 (451)
T COG0770 82 LVLDTLEALGKLAKAYRQKFNAKVIAITGSNGKTTTKEMLAAILSTKGK---VHATPG--NFNNEI---GLPLT------ 147 (451)
T ss_pred EeHHHHHHHHHHHHHHHHhcCCcEEEEeCCCCcHHHHHHHHHHHhhcCe---EecCCC--ccCccc---cchhH------
Confidence 6899999999999998777789999999999999999999999998553 577776 333333 33332
Q ss_pred HHHHHHHHHHhhhhccCCcchHHHHHHHHhhhhhhccCCCEEEEeeccC--CccccccccCCccEEEEcCCCcchhhhcC
Q psy15432 167 YFWTVYNALHAKRKHAEDMPAYFKFLTVMSFYVFVKEKPDAVIMEVGIG--GRYDNTNIIPNTAVVGITSLGYDHTAVLG 244 (1255)
Q Consensus 167 ~~~~v~~~l~~~~~~~~~~p~~Fe~Lt~~A~~~F~~~~vD~aVlEvG~G--Gr~D~tnii~~P~v~vITnIg~DHld~lG 244 (1255)
.++ .....|++|+|+|+. |+++-+--+-+|++++||||+.+|++++|
T Consensus 148 ---------------------ll~----------~~~~~e~~VlEmG~~~~GeI~~l~~i~~P~iavItnIg~aHle~fg 196 (451)
T COG0770 148 ---------------------LLR----------LPADTEYAVLEMGMNHPGEIAELSEIARPDIAVITNIGEAHLEGFG 196 (451)
T ss_pred ---------------------HHh----------CCCcccEEEEEcCCCCCCcHHHHhcccCCCEEEEcChhHHHHHhcC
Confidence 111 345589999999998 78877777778999999999999999999
Q ss_pred CCHHHHHHHHHcccC---CCceeeeccCCCchHHHHHHHhhhccCceEEEcCCc--c--------------eeeecCc--
Q psy15432 245 NTIEEITMQKAGIMK---PNCIAVTSANQRGPCKQILLETSRALNCVLLEAPSI--L--------------NYRWRGQ-- 303 (1255)
Q Consensus 245 ~Tle~Ia~~KagI~k---~g~~~v~~~~q~~e~~~vl~~~a~~~~~~l~~~~~~--~--------------~~~~~~~-- 303 (1255)
|.+.|+++|+.|+. ++..+|++. |.+.......... ...++.++.. . .+.....
T Consensus 197 -s~e~Ia~aK~Ei~~~~~~~g~ai~n~--d~~~~~~~~~~~~--~~~v~~fg~~~~~d~~~~~i~~~~~~~~f~~~~~~~ 271 (451)
T COG0770 197 -SREGIAEAKAEILAGLRPEGIAILNA--DNPLLKNWAAKIG--NAKVLSFGLNNGGDFRATNIHLDEEGSSFTLDIEGG 271 (451)
T ss_pred -CHHHHHHHHHHHHhccCCCcEEEEEC--ccHHHHHHHhhcC--CCcEEEEcCCCCCceeeEEEEEcCCceEEEEEecCc
Confidence 79999999999995 444466665 5444333333221 1222222210 1 1111111
Q ss_pred --ccccCCCchhHHhhHHHHHHHHHHHHHhhccchhhhhHHHHhhhhhccCCCCCCCCCCCCCCccCCCCCCCCccccCC
Q psy15432 304 --PLDEDWKSTVQSINISLAIQLAYLWMFRMNKSAELKSVIDKFLAEMRVSSPNETPGGQGHLSSCETPGGQGHLSFSET 381 (1255)
Q Consensus 304 --~i~l~l~G~~q~~Na~lAia~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (1255)
.+.++++|.||+.|+++|+++|..+
T Consensus 272 ~~~~~l~~~G~hn~~NalaA~a~a~~l----------------------------------------------------- 298 (451)
T COG0770 272 EAEFELPLPGRHNVTNALAAAALALEL----------------------------------------------------- 298 (451)
T ss_pred eEEEEecCCcHhHHHHHHHHHHHHHHc-----------------------------------------------------
Confidence 4889999999999999999999775
Q ss_pred CCCCCCccccccccCCCCCCCChHHHHHHHhcCC-CCCceE-EEEecCcEEEEc-cCCCHHHHHHHHHHHHhhhhccccc
Q psy15432 382 PGGQGHLTGNQSSLLMGPHFEIDPKTYRGIKACV-WPGRVQ-VIRKNNFKYFLD-GAHTTDSIELCAKWFLRKSEAEASS 458 (1255)
Q Consensus 382 ~~~~~~~~~~~~~l~~~~~~~l~e~i~~gL~~~~-~pGR~e-~v~~~~~~vilD-gAHnp~si~~~l~~l~~~~~~~~~~ 458 (1255)
|++ .++|++||+++. .+||+| +...++.++|.| |.-||+||.++++.+......
T Consensus 299 ------------------G~~-~e~i~~~L~~~~~~~gR~~~~~~~~g~~iIdD~YNAnp~sm~aai~~l~~~~~~---- 355 (451)
T COG0770 299 ------------------GLD-LEEIAAGLKELKPVKGRLEVILLANGKTLIDDSYNANPDSMRAALDLLAALPGR---- 355 (451)
T ss_pred ------------------CCC-HHHHHHHHHhcCCCCccceeEecCCCcEEEEcCCCCCHHHHHHHHHHHhhCccC----
Confidence 677 999999999999 999999 444567788888 899999999999999876432
Q ss_pred CccCCCCCCCCCccCCCCCccEEEEEecCCC------CChhhhhHHhhccCCCcEEEEcCC
Q psy15432 459 SRSVSSCPLDPTQSKSSNVIQRILVFNVTGE------RDPTKLLSPLLQSNQFEYILVTPN 513 (1255)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~~~~~ilVfg~~~d------rD~~~ll~~L~~~~~~d~vi~t~~ 513 (1255)
+.++|.|.|.+ ..+.++.+.+ ....+|.+++..+
T Consensus 356 --------------------~~i~VlGdM~ELG~~s~~~H~~v~~~~-~~~~~d~v~~~G~ 395 (451)
T COG0770 356 --------------------KGIAVLGDMLELGEESEELHEEVGEYA-VEAGIDLVFLVGE 395 (451)
T ss_pred --------------------CcEEEeCChhhhCccHHHHHHHHHHHH-HhcCceEEEEEcc
Confidence 23899998754 2355566666 4445899998765
|
|
| >COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.3e-29 Score=293.29 Aligned_cols=332 Identities=15% Similarity=0.151 Sum_probs=232.0
Q ss_pred HHHhhccCCcccccccchHHHHHHHHHhcCcccccccceEEEecCCCCCccHHHHHHHHHHHCCCCeEEEcCcccccccc
Q psy15432 683 IRESKLRKDPVEMQAVQVDQVVQYLGHLNITLDDIKKLNVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRE 762 (1255)
Q Consensus 683 l~~~~~~g~~~~~~~~~v~~~~~~L~~Lg~~~~~~~~l~vIhVTGTnGKgST~aml~sILr~~G~rtGl~tSPhL~~~~E 762 (1255)
+++++++|. +.+.++..+....+ ..|+|+||||||||||++|+++||+++|+++.+-++.
T Consensus 86 v~~A~~~gi------~i~~dieL~~r~~~-------~~p~vaITGTNGKTTTTsli~~~l~~~G~~~~lgGNI------- 145 (448)
T COG0771 86 VEAAKAAGI------EIIGDIELFYRLSG-------EAPIVAITGTNGKTTTTSLIAHLLKAAGLDALLGGNI------- 145 (448)
T ss_pred HHHHHHcCC------cEEeHHHHHHHhcC-------CCCEEEEECCCchHHHHHHHHHHHHhcCCCceecccc-------
Confidence 445555665 46778888777652 2469999999999999999999999999999887765
Q ss_pred eeeeCCeecChhhhhhHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHHhhhcCCCCEEEEecccCCccccccccCCCcEE
Q psy15432 763 RIKLNGEPISYDKFTKYFWTVYNALHAKRKHAEDMPAYFKFLTVMSFYVFVKEKPDAVIMEVGIGGRYDNTNIIPNTAVV 842 (1255)
Q Consensus 763 RI~InG~pIs~~~f~~~~~~v~~~l~~~~~~~~~~pt~Fe~lT~mAf~~F~~~~vD~aVlEVG~GGr~D~TNvi~~P~Va 842 (1255)
|.|+.+-. . .....|+.|+|+++...-..-++ +|.++
T Consensus 146 -----G~p~l~~~------------~------------------------~~~~~d~~VlElSSfQL~~~~~~--~P~ia 182 (448)
T COG0771 146 -----GTPALELL------------E------------------------QAEPADVYVLELSSFQLETTSSL--RPEIA 182 (448)
T ss_pred -----CccHHHhh------------c------------------------ccCCCCEEEEEccccccccCccC--CccEE
Confidence 56644211 0 23478999999999876666566 79999
Q ss_pred EEcCCCchhhhhcCCCHHHHHHHHhccccCCc-eEEEccCCCChhHHHHHHHhhhcCCeEEEcCCc---cceeccCC---
Q psy15432 843 GITSLGYDHTAVLGNTIEEITMQKAGIMKPNC-IAVTSANQRGPCKQILLETSRALNCVLLEAPSI---LNYRWRGQ--- 915 (1255)
Q Consensus 843 vITnIg~DHl~~LG~TleeIA~~KagI~K~g~-~av~~~~qd~~~~~vl~~~A~~~~~~l~~~~~~---~~~~~~~~--- 915 (1255)
+||||+.||+++|| ++|+|+..|..|++... .+|++. |++....+...+.......+..... ..|...+.
T Consensus 183 vilNi~~DHLD~H~-s~e~Y~~aK~~i~~~~~~~~Vin~--dd~~~~~~~~~~~~~~~~~fs~~~~~~~~~~~~~~~~~~ 259 (448)
T COG0771 183 VILNISEDHLDRHG-SMENYAAAKLRILEGQTEVAVINA--DDAYLKTLADEATKARVIWFSFGEPLADGDYIYDGKLVF 259 (448)
T ss_pred EEecCCHHHhhhcc-CHHHHHHHHHHHHcCCccEEEEeC--CcHHHhhhhhhcccceeEEEEccccccccceeecchhcc
Confidence 99999999999999 99999999999998776 788876 4444333333321111122222211 11111111
Q ss_pred -------ccccCCCchhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHhhhhhcCCCCCCCCCCCCCCcCCCCCCCCCc
Q psy15432 916 -------PLDEDWKSTVQSINISLAIQLAYLWMFRMNKSAELKSVIDKFLAEMRVSSPNETPGGQGHLSSCETPGGQGHL 988 (1255)
Q Consensus 916 -------~v~l~L~G~hq~~Na~lAiala~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 988 (1255)
.-.++++|.||..|+++|+++|+.
T Consensus 260 ~~~~i~~~~~l~l~G~hn~~N~lAa~a~a~~------------------------------------------------- 290 (448)
T COG0771 260 KGEKLLPADELKLPGAHNLENALAALALARA------------------------------------------------- 290 (448)
T ss_pred ccccccchhhcCCcchhhHHHHHHHHHHHHH-------------------------------------------------
Confidence 125789999999999999999886
Q ss_pred cccCCCCCCCCcccccccccCCCCCCCC-HHHHHHHhcCC-CCCcEEEEeec-CcEEEEEc-CcCHHHHHHHHHHHHhhh
Q psy15432 989 SFSETPGGQGHLTGNQSSLLMGPHFEID-PKTYRGIKACV-WPGRVQVIRKN-NFKYFLDG-AHTTDSIELCAKWFLRKS 1064 (1255)
Q Consensus 989 ~~~~~~~~~~~~~~n~~~~~~~~~~~i~-~~i~~gL~~~~-~pGR~E~v~~~-~~~vilDg-AHNP~S~~a~l~~l~~~~ 1064 (1255)
.|++ +.+.++|.+|+ +|+|||.+... ++.||.|. |.||++..+++..|.
T Consensus 291 ------------------------~gv~~e~i~~~L~~F~gl~HR~e~v~~~~gv~f~NDSKATN~~At~~AL~~~~--- 343 (448)
T COG0771 291 ------------------------LGVPPEAILEALSSFTGLPHRLEFVGEKDGVLFINDSKATNVDATLAALSGFD--- 343 (448)
T ss_pred ------------------------cCCCHHHHHHHHHhCCCCCcceEEEEecCCEEEecCCCCCCHHHHHHHHHcCC---
Confidence 4566 67999999999 99999999864 78889995 999999999998664
Q ss_pred ccccCCCcccCCCCCcEEEEEe-cCCCCChhhhhhhhhcCCCCcEEEEcCCCCcccccccCCCCCcccccc--cccccCC
Q psy15432 1065 EAEANPTQSKSSNVIQRILVFN-VTGERDPTKLLSPLLQSNQFEYILVTPNILTNEIRWRGQPLDEDWKST--VQSINIS 1141 (1255)
Q Consensus 1065 ~~~~~~~~~~~~~~~~~vlVfg-~~~drD~~~ll~~L~~~~~~d~vi~t~~~~~~~~~~~~~~~~~~~~~d--~~~~~~~ 1141 (1255)
+++++|.| ..++-|...+.+.+ + ...-.+++-+.....-.... +.- ......+
T Consensus 344 --------------~~v~lI~GG~~Kg~df~~L~~~~-~-~~~~~~~~~G~~~~~i~~~l--------~~~~~~~~~~~~ 399 (448)
T COG0771 344 --------------GPVILIAGGDDKGADFSPLAEIL-A-KVIKKLVLIGEDAEKIAAAL--------KEAGPSLVICET 399 (448)
T ss_pred --------------CCEEEEECCCCCCCChhHHHHHh-h-hcceEEEEeCCCHHHHHHHH--------HhcCCceeecCc
Confidence 25777776 33334566655555 3 22333555454422221111 111 1234457
Q ss_pred HHHHHHHHHHHcCC-CceEEeecCCCCCCccccccccccc
Q psy15432 1142 LAIQLAYLWMFRMN-KSAELKRNQSSLPMGPHFEIDPKTY 1180 (1255)
Q Consensus 1142 ~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~ 1180 (1255)
.++..+.++...++ +.+.|.+++.|++|.+.|+.=-..+
T Consensus 400 le~Av~~a~~~a~~gd~VLLSPacASfDqf~~feeRG~~F 439 (448)
T COG0771 400 LEEAVQLARELAQPGDVVLLSPACASFDQFKNFEERGEEF 439 (448)
T ss_pred HHHHHHHHHHhhcCCCeEEEcccccchhhhcCHHHHHHHH
Confidence 78888888777766 5678889999999998776543333
|
|
| >PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.8e-29 Score=318.45 Aligned_cols=261 Identities=13% Similarity=0.105 Sum_probs=177.5
Q ss_pred cEEEEcCCCChhHHHHHHHHHHHHCCCCeEEEcCCcccccceeEEeCCeecChhhhhhHHHHHHHHHHhhhhccCCcchH
Q psy15432 109 NVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTKYFWTVYNALHAKRKHAEDMPAY 188 (1255)
Q Consensus 109 ~vIhVtGTnGKgST~a~l~sIL~~~G~k~Gl~tSPhL~~~rERI~InG~~is~~~ft~~~~~v~~~l~~~~~~~~~~p~~ 188 (1255)
++|+||||||||||++|+.+||+++|+++..+. .. .+|.++..
T Consensus 105 ~~IaITGTnGKTTTt~li~~iL~~~g~~~~~~~-gG---------~~g~~~~~--------------------------- 147 (809)
T PRK14573 105 ISILVSGSHGKTTVSSLITAIFQEAKKDPSYAI-GG---------LNQEGLNG--------------------------- 147 (809)
T ss_pred CEEEEECCCCHHHHHHHHHHHHHhCCCCCeEEE-CC---------cccccccc---------------------------
Confidence 699999999999999999999999998643332 11 12333221
Q ss_pred HHHHHHHhhhhhhccCCCEEEEeeccCCccccccccCCccEEEEcCCCcchhhhcCCCHHHHHHHHHcccC---CCceee
Q psy15432 189 FKFLTVMSFYVFVKEKPDAVIMEVGIGGRYDNTNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIMK---PNCIAV 265 (1255)
Q Consensus 189 Fe~Lt~~A~~~F~~~~vD~aVlEvG~GGr~D~tnii~~P~v~vITnIg~DHld~lG~Tle~Ia~~KagI~k---~g~~~v 265 (1255)
...+.|++|+|+|+.. -+ +. ..+|+++|||||+.||+|+++.|+++|+.+|.-+++ ++..+|
T Consensus 148 ------------~~~~~d~~V~E~ss~~-~~-~~-~~~P~iaViTNI~~DHLd~~~gs~e~y~~ak~~~~~~~~~~~~~V 212 (809)
T PRK14573 148 ------------YSGSSEYFVAEADESD-GS-LK-HYTPEFSVITNIDNEHLSNFEGDRELLLASIQDFARKVQQINKCF 212 (809)
T ss_pred ------------ccCCCCEEEEECCCCc-ch-hh-eeecCEEEEeCCChhhhhhhcCCHHHHHHHHHHHHhcCCCCCEEE
Confidence 1124699999999872 22 22 238999999999999999884399999999988864 345567
Q ss_pred eccCCCchHHHHHHHhhhcc----CceE----EEcCCc-ceeee--cC---cccccCCCchhHHhhHHHHHHHHHHHHHh
Q psy15432 266 TSANQRGPCKQILLETSRAL----NCVL----LEAPSI-LNYRW--RG---QPLDEDWKSTVQSINISLAIQLAYLWMFR 331 (1255)
Q Consensus 266 ~~~~q~~e~~~vl~~~a~~~----~~~l----~~~~~~-~~~~~--~~---~~i~l~l~G~~q~~Na~lAia~a~~~l~~ 331 (1255)
++. +++....... .... .+.+ +..... ..+.+ .+ ..+.++++|.||..|+++|++++..+
T Consensus 213 ~N~-Dd~~~~~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~f~l~~~~~~~~~~~l~l~G~hn~~Na~aAia~~~~l--- 286 (809)
T PRK14573 213 YNG-DCPRLKGCLQ--GHSYGFSSSCDLHILSYYQEGWRSYFSAKFLGVVYQDIELNLVGMHNVANAAAAMGIALTL--- 286 (809)
T ss_pred EeC-CCHHHHhhcc--cEEEccCCCCcEEEEEEEecCCeEEEEEEECCceEEEEEeccccHhhHHHHHHHHHHHHHc---
Confidence 776 4443322110 0000 0010 000100 01211 11 23567899999999999999988654
Q ss_pred hccchhhhhHHHHhhhhhccCCCCCCCCCCCCCCccCCCCCCCCccccCCCCCCCCccccccccCCCCCCCChHHHHHHH
Q psy15432 332 MNKSAELKSVIDKFLAEMRVSSPNETPGGQGHLSSCETPGGQGHLSFSETPGGQGHLTGNQSSLLMGPHFEIDPKTYRGI 411 (1255)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~e~i~~gL 411 (1255)
+++ .+.+.+||
T Consensus 287 --------------------------------------------------------------------gi~-~~~i~~~L 297 (809)
T PRK14573 287 --------------------------------------------------------------------GID-EGAIRNAL 297 (809)
T ss_pred --------------------------------------------------------------------CCC-HHHHHHHH
Confidence 556 89999999
Q ss_pred hcCC-CCCceEEEEe-cCcEEEEccCCCHHHHHHHHHHHHhhhhcccccCccCCCCCCCCCccCCCCCccEEEEEecCCC
Q psy15432 412 KACV-WPGRVQVIRK-NNFKYFLDGAHTTDSIELCAKWFLRKSEAEASSSRSVSSCPLDPTQSKSSNVIQRILVFNVTGE 489 (1255)
Q Consensus 412 ~~~~-~pGR~e~v~~-~~~~vilDgAHnp~si~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilVfg~~~d 489 (1255)
++|. ||||||++.. +++.||+||||||+|+++++++++..... +|+++||+.-.+
T Consensus 298 ~~f~~~~~R~e~~~~~~~~~~i~D~ahnP~~~~a~l~~l~~~~~~-----------------------~rli~vf~~~~~ 354 (809)
T PRK14573 298 KGFSGVQRRLERKNSSETFLFLEDYAHHPSEISCTLRAVRDAVGL-----------------------RRIIAICQPHRF 354 (809)
T ss_pred HhCCCCCCCCEEEeccCCcEEEEECCCCHHHHHHHHHHHHhhcCC-----------------------CEEEEEEcCCcc
Confidence 9999 9999999975 45789999999999999999999865322 278899964333
Q ss_pred CChhhhhHHhhc-cCCCcEEEEcCCCCCCCC
Q psy15432 490 RDPTKLLSPLLQ-SNQFEYILVTPNILTNES 519 (1255)
Q Consensus 490 rD~~~ll~~L~~-~~~~d~vi~t~~~~~~~~ 519 (1255)
+....++..+.. -..+|.+++|+.++..|.
T Consensus 355 ~~~~~~~~~~~~~l~~~d~vilt~~~~~~e~ 385 (809)
T PRK14573 355 SRLRECLDSFPSAFQDADEVILTDVYSAGEE 385 (809)
T ss_pred hhHHHHHHHHHHHHHHCCEEEECCccCCCCC
Confidence 333333322211 124899999988776665
|
|
| >PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.3e-29 Score=297.08 Aligned_cols=214 Identities=21% Similarity=0.275 Sum_probs=155.2
Q ss_pred ccEEEEcCCCChhHHHHHHHHHHHHCCCCeEEEcCCcccccceeEEeCCeecChhhhhhHHHHHHHHHHhhhhccCCcch
Q psy15432 108 LNVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTKYFWTVYNALHAKRKHAEDMPA 187 (1255)
Q Consensus 108 l~vIhVtGTnGKgST~a~l~sIL~~~G~k~Gl~tSPhL~~~rERI~InG~~is~~~ft~~~~~v~~~l~~~~~~~~~~p~ 187 (1255)
.++|+||||||||||++|+.+||+.+|+++.+-++. |.|..
T Consensus 104 ~~~IaVTGTnGKTTTt~ll~~iL~~~g~~~~~~Gni------------G~p~l--------------------------- 144 (454)
T PRK01368 104 LKFIAITGTNGKSTTTALISHILNSNGLDYPVAGNI------------GVPAL--------------------------- 144 (454)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHHhcCCCeEEEccC------------CHHHh---------------------------
Confidence 479999999999999999999999999987554432 22211
Q ss_pred HHHHHHHHhhhhhhccCCCEEEEeeccCCccccccccCCccEEEEcCCCcchhhhcCCCHHHHHHHHHcccCC---Ccee
Q psy15432 188 YFKFLTVMSFYVFVKEKPDAVIMEVGIGGRYDNTNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIMKP---NCIA 264 (1255)
Q Consensus 188 ~Fe~Lt~~A~~~F~~~~vD~aVlEvG~GGr~D~tnii~~P~v~vITnIg~DHld~lG~Tle~Ia~~KagI~k~---g~~~ 264 (1255)
. ...+.|++|+|+|+... +.+..+ +|++++||||+.||+|+|| |+|+|+.+|..||+. +..+
T Consensus 145 -----~-------~~~~~~~~VlE~ss~ql-~~~~~~-~P~iavitNI~~DHLd~~~-s~e~y~~aK~~i~~~~~~~~~~ 209 (454)
T PRK01368 145 -----Q-------AKASKDGYVLELSSFQL-DLVKTF-TAKIAVLLNITPDHLDRHQ-DMDGYIAAKSKIFDRMDKDSYA 209 (454)
T ss_pred -----c-------ccCCCCEEEEEcCchhh-cccccc-CCCEEEEecCChhHhhccC-CHHHHHHHHHHHHhcCCCCCEE
Confidence 0 12335999999999864 334433 7999999999999999999 999999999999953 4556
Q ss_pred eeccCCCchHHHHHHHhhhccCce--EEEcCC--cc-------e--eee--c---CcccccCCCchhHHhhHHHHHHHHH
Q psy15432 265 VTSANQRGPCKQILLETSRALNCV--LLEAPS--IL-------N--YRW--R---GQPLDEDWKSTVQSINISLAIQLAY 326 (1255)
Q Consensus 265 v~~~~q~~e~~~vl~~~a~~~~~~--l~~~~~--~~-------~--~~~--~---~~~i~l~l~G~~q~~Na~lAia~a~ 326 (1255)
|++. +++.......+......+. .|.... .. . +.+ . ...+.++++|.||..|+++|++++.
T Consensus 210 Vln~-Dd~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~hn~~Na~aAia~~~ 288 (454)
T PRK01368 210 VINI-DNDYCREIFIKLQQEQRIKLIPFSVTKILENGISVVDDKISDNFFDDISFKLPFNKNLQGKHNCENIAASYAVAK 288 (454)
T ss_pred EEeC-CcHHHHHHHHHhhcccCceEEEEeCCcccCCCcEEECCEEEEEecCCcceEEEecCCCCchhhHHHHHHHHHHHH
Confidence 7776 4444433222211111111 122110 00 0 011 0 1135568899999999999999887
Q ss_pred HHHHhhccchhhhhHHHHhhhhhccCCCCCCCCCCCCCCccCCCCCCCCccccCCCCCCCCccccccccCCCCCCCChHH
Q psy15432 327 LWMFRMNKSAELKSVIDKFLAEMRVSSPNETPGGQGHLSSCETPGGQGHLSFSETPGGQGHLTGNQSSLLMGPHFEIDPK 406 (1255)
Q Consensus 327 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~e~ 406 (1255)
.+ +++ .+.
T Consensus 289 ~l-----------------------------------------------------------------------gi~-~~~ 296 (454)
T PRK01368 289 II-----------------------------------------------------------------------GVE-PKK 296 (454)
T ss_pred Hc-----------------------------------------------------------------------CCC-HHH
Confidence 54 556 889
Q ss_pred HHHHHhcCC-CCCceEEEEe-cCcEEEEc-cCCCHHHHHHHHHHH
Q psy15432 407 TYRGIKACV-WPGRVQVIRK-NNFKYFLD-GAHTTDSIELCAKWF 448 (1255)
Q Consensus 407 i~~gL~~~~-~pGR~e~v~~-~~~~vilD-gAHnp~si~~~l~~l 448 (1255)
|.++|++|. ||||||++.. +++.||+| +||||+|+.+++++|
T Consensus 297 i~~~L~~F~~~~~Rle~v~~~~gv~~i~DS~atN~~a~~~al~~~ 341 (454)
T PRK01368 297 ILESISSFQSLPHRMQYIGSINNISFYNDSKATNAISAVQSIKAL 341 (454)
T ss_pred HHHHHHhCCCCCcceEEEEEECCeEEEECCCCCCHHHHHHHHHhc
Confidence 999999988 9999999976 57789999 999999999988876
|
|
| >PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.7e-28 Score=293.34 Aligned_cols=304 Identities=17% Similarity=0.132 Sum_probs=204.9
Q ss_pred ceEEEecCCCCCccHHHHHHHHHHHCCCCeEEEcCcccccccceeeeCCeecChhhhhhHHHHHHHHHHHHhhcCCCCCc
Q psy15432 720 LNVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTKYFWTVYNALHAKRKHAEDMPA 799 (1255)
Q Consensus 720 l~vIhVTGTnGKgST~aml~sILr~~G~rtGl~tSPhL~~~~ERI~InG~pIs~~~f~~~~~~v~~~l~~~~~~~~~~pt 799 (1255)
.++|+||||||||||++|+++||+..|+++..-++ | |.|+... +.
T Consensus 117 ~~vIaITGTnGKTTT~~ll~~iL~~~g~~~~~~gn---------i---G~p~~~~------------~~----------- 161 (458)
T PRK01710 117 AKVFGVTGSDGKTTTTTLIYEMLKEEGYKTWVGGN---------I---GTPLFSN------------IE----------- 161 (458)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHHhCCCCEEECCc---------c---ChhHHHH------------Hh-----------
Confidence 47999999999999999999999999988743222 2 4443210 00
Q ss_pred HHHHHHHHHHHhhhcCCCCEEEEecccCCccccccccCCCcEEEEcCCCchhhhhcCCCHHHHHHHHhcccc---CCceE
Q psy15432 800 YFKFLTVMSFYVFVKEKPDAVIMEVGIGGRYDNTNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIMK---PNCIA 876 (1255)
Q Consensus 800 ~Fe~lT~mAf~~F~~~~vD~aVlEVG~GGr~D~TNvi~~P~VavITnIg~DHl~~LG~TleeIA~~KagI~K---~g~~a 876 (1255)
...+.|++|+|+|+...-+. .+ +|+++|||||+.||++++| |+|+|+.+|..|++ +++.+
T Consensus 162 -------------~~~~~~~~VlE~~~~~~~~~-~~--~PdiaViTNI~~dHld~~~-s~e~~~~aK~~i~~~~~~~~~~ 224 (458)
T PRK01710 162 -------------EIKEEDKVVLELSSFQLMTM-DV--SPEVAVVTNLSPNHLDVHK-DMEEYIDAKKNIFKYQSENDLL 224 (458)
T ss_pred -------------hCCCCCEEEEEcCccccccC-CC--CCCEEEEecCChhhccccC-CHHHHHHHHHHHHhcCCCCCEE
Confidence 11257999999999843332 23 7999999999999999999 99999999999985 56788
Q ss_pred EEccCCCChhHHHHHHHhhhcCCeEEEcCCc-----cc------eeccC----CccccCCCchhHHHHHHHHHHHHHHHH
Q psy15432 877 VTSANQRGPCKQILLETSRALNCVLLEAPSI-----LN------YRWRG----QPLDEDWKSTVQSINISLAIQLAYLWM 941 (1255)
Q Consensus 877 v~~~~qd~~~~~vl~~~A~~~~~~l~~~~~~-----~~------~~~~~----~~v~l~L~G~hq~~Na~lAiala~~~l 941 (1255)
|++. + ++....+...+ ..+++.++.. .. +...+ ..+.++++|.||++|+++|++++..
T Consensus 225 v~n~-D-d~~~~~~~~~~---~~~~~~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~hnv~NalaA~a~a~~-- 297 (458)
T PRK01710 225 VLNK-D-NEITNGMEKEA---KGDVVKFSRKEKVYEGAYLKNGKLYIRGKEVCKKDDIKLKGMHNVENLLAAFCAVND-- 297 (458)
T ss_pred EEeC-C-cHHHHHHHhhc---CCcEEEEeCCCCCCCceEEeCCEEEEcCceEEEhhhcCCccHhHHHHHHHHHHHHHh--
Confidence 8887 4 44333232222 1223333210 00 11111 1356889999999999999998764
Q ss_pred HhhcchhhhhhHHHHHhhhhhcCCCCCCCCCCCCCCcCCCCCCCCCccccCCCCCCCCcccccccccCCCCCCCC-HHHH
Q psy15432 942 FRMNKSAELKSVIDKFLAEMRVSSPNETPGGQGHLSSCETPGGQGHLSFSETPGGQGHLTGNQSSLLMGPHFEID-PKTY 1020 (1255)
Q Consensus 942 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~i~-~~i~ 1020 (1255)
. ++ +.+.
T Consensus 298 -----------------------------------------------------------------------~-i~~~~i~ 305 (458)
T PRK01710 298 -----------------------------------------------------------------------D-VSIESMK 305 (458)
T ss_pred -----------------------------------------------------------------------C-CCHHHHH
Confidence 2 45 6799
Q ss_pred HHHhcCC-CCCcEEEEee-cCcEEEEE-cCcCHHHHHHHHHHHHhhhccccCCCcccCCCCCcEEEEEec-CCCCChhhh
Q psy15432 1021 RGIKACV-WPGRVQVIRK-NNFKYFLD-GAHTTDSIELCAKWFLRKSEAEANPTQSKSSNVIQRILVFNV-TGERDPTKL 1096 (1255)
Q Consensus 1021 ~gL~~~~-~pGR~E~v~~-~~~~vilD-gAHNP~S~~a~l~~l~~~~~~~~~~~~~~~~~~~~~vlVfg~-~~drD~~~l 1096 (1255)
++|++|+ .+||||.+.. ++.++|.| |||||+||.++++.+. .++++|+|- ..+.+++++
T Consensus 306 ~~L~~f~~~~~R~e~~~~~~g~~~i~Dsy~~np~s~~~al~~~~-----------------~~~i~IlGg~~~~~~~~~l 368 (458)
T PRK01710 306 KVATTFSGVEHRCEFVREINGVKYYNDSIASSPTRTLAGLKAFE-----------------KPVILIAGGYDKKIPFEPL 368 (458)
T ss_pred HHHHhCCCCCcceEEEEEECCEEEecccccCCHHHHHHHHHhCC-----------------CCEEEEeCCcCCCCCHHHH
Confidence 9999999 9999999874 67778888 9999999999998652 246888873 122345555
Q ss_pred hhhhhcCCCCcEEEEcCCCCcccccccCCCCCccccc-ccccccCCHHHHHHHHHHHcCCC-ceEEeecCCCCCCccccc
Q psy15432 1097 LSPLLQSNQFEYILVTPNILTNEIRWRGQPLDEDWKS-TVQSINISLAIQLAYLWMFRMNK-SAELKRNQSSLPMGPHFE 1174 (1255)
Q Consensus 1097 l~~L~~~~~~d~vi~t~~~~~~~~~~~~~~~~~~~~~-d~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~ 1174 (1255)
.+.+ . ..+|.+++++...........+-.. .... ....+..+.++.++.+.....+. .+.+..++.|++|-+-|+
T Consensus 369 ~~~~-~-~~~~~vi~~G~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~a~~~~~~~~~~gd~VLlspa~aS~d~f~~~~ 445 (458)
T PRK01710 369 AEEG-Y-EKIKTLILMGATKNKIKEAFEKVIS-EKGIDIPIVIVNSLEEAVKVAKEIAEKGDIVTLSPACASFDMFPNFE 445 (458)
T ss_pred HHHH-H-hhccEEEEECCCHHHHHHHHhhccc-ccCCCcceEEcCCHHHHHHHHHHhCCCCCEEEeChhhcccccccCHH
Confidence 5544 3 4489999998765432211100000 0000 01223457888888887766664 556667889999985544
|
|
| >PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=8e-28 Score=286.11 Aligned_cols=306 Identities=16% Similarity=0.125 Sum_probs=207.5
Q ss_pred chHHHHHHHHHhcCcccccccceEEEecCCCCCccHHHHHHHHHHHCCCCeEEEcCcccccccceeeeCCeecChhhhhh
Q psy15432 699 QVDQVVQYLGHLNITLDDIKKLNVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTK 778 (1255)
Q Consensus 699 ~v~~~~~~L~~Lg~~~~~~~~l~vIhVTGTnGKgST~aml~sILr~~G~rtGl~tSPhL~~~~ERI~InG~pIs~~~f~~ 778 (1255)
.+.++..++..+.. .+.++|+||||||||||++|+++||+..|.++.+.++. |.|+
T Consensus 86 vv~~~~~~~~~~~~-----~~~~~I~ITGT~GKTTTt~ml~~iL~~~g~~~~~~Gni------------G~p~------- 141 (418)
T PRK00683 86 VVTDIQLAFQTPEF-----TRYPSLGITGSTGKTTTILFLEHLLKRLGIPAFAMGNI------------GIPI------- 141 (418)
T ss_pred EEEHHHHHHhhhhc-----CCCCEEEEECCCChHHHHHHHHHHHHHcCCCeEEECCc------------CHHH-------
Confidence 56777766665421 12479999999999999999999999999888777763 4442
Q ss_pred HHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHHhhhcCCCCEEEEecccCCccccccccCCCcEEEEcCCCchhhhhcCCC
Q psy15432 779 YFWTVYNALHAKRKHAEDMPAYFKFLTVMSFYVFVKEKPDAVIMEVGIGGRYDNTNIIPNTAVVGITSLGYDHTAVLGNT 858 (1255)
Q Consensus 779 ~~~~v~~~l~~~~~~~~~~pt~Fe~lT~mAf~~F~~~~vD~aVlEVG~GGr~D~TNvi~~P~VavITnIg~DHl~~LG~T 858 (1255)
+. ...+.|++|+|+|+.+.-+.-..++.|+++|||||+.||+++|| |
T Consensus 142 --------l~------------------------~~~~~~~~V~E~~s~~~~~~~~~~~~~~iavitNi~~dHld~~~-s 188 (418)
T PRK00683 142 --------LD------------------------GMQQPGVRVVEISSFQLADQEKSYPVLSGGMILNISDNHLDYHG-N 188 (418)
T ss_pred --------HH------------------------HhhcCCEEEEEechhhhCcCcccCCCccEEEEecCChhHhccCC-C
Confidence 00 11236899999999965443334445689999999999999999 9
Q ss_pred HHHHHHHHhccccCCceEEEccCCCChhHHHHHHHhhhcCCeEEEc-CCccceeccCCccccCCCchhHHHHHHHHHHHH
Q psy15432 859 IEEITMQKAGIMKPNCIAVTSANQRGPCKQILLETSRALNCVLLEA-PSILNYRWRGQPLDEDWKSTVQSINISLAIQLA 937 (1255)
Q Consensus 859 leeIA~~KagI~K~g~~av~~~~qd~~~~~vl~~~A~~~~~~l~~~-~~~~~~~~~~~~v~l~L~G~hq~~Na~lAiala 937 (1255)
+|+|+.+|+.|+.. +.+. ++.... . ....+...... ......... ...++++|.||.+|+++|++++
T Consensus 189 ~e~y~~aK~~i~~~----~~~~--~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~--~~~~~~~g~hn~~Na~aA~a~~ 256 (418)
T PRK00683 189 LSAYFQAKQNIAKC----LRNP--DDLWVG---D-ERSYGHSYLEYVQEIMRLLDK--GSALKPLYLHDRYNYCAAYALA 256 (418)
T ss_pred HHHHHHHHHHHHHh----hhCc--cccccc---c-cCCcCceeecCcchhhhhhcc--ccccCCCccchHHHHHHHHHHH
Confidence 99999999999852 1111 111000 0 00000000000 000000001 1246788999999999999987
Q ss_pred HHHHHhhcchhhhhhHHHHHhhhhhcCCCCCCCCCCCCCCcCCCCCCCCCccccCCCCCCCCcccccccccCCCCCCCC-
Q psy15432 938 YLWMFRMNKSAELKSVIDKFLAEMRVSSPNETPGGQGHLSSCETPGGQGHLSFSETPGGQGHLTGNQSSLLMGPHFEID- 1016 (1255)
Q Consensus 938 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~i~- 1016 (1255)
..+ +|++
T Consensus 257 ~~l------------------------------------------------------------------------~g~~~ 264 (418)
T PRK00683 257 NEV------------------------------------------------------------------------FPISE 264 (418)
T ss_pred HHh------------------------------------------------------------------------cCCCH
Confidence 751 2456
Q ss_pred HHHHHHHhcCC-CCCcEEEEee-cCcEEEEE-cCcCHHHHHHHHHHHHhhhccccCCCcccCCCCCcEEEEEe-cCCCCC
Q psy15432 1017 PKTYRGIKACV-WPGRVQVIRK-NNFKYFLD-GAHTTDSIELCAKWFLRKSEAEANPTQSKSSNVIQRILVFN-VTGERD 1092 (1255)
Q Consensus 1017 ~~i~~gL~~~~-~pGR~E~v~~-~~~~vilD-gAHNP~S~~a~l~~l~~~~~~~~~~~~~~~~~~~~~vlVfg-~~~drD 1092 (1255)
+++.+||+++. ||||||++.. ++..+|.| |++||+|++++++.+. +++++||| +..++|
T Consensus 265 ~~i~~~l~~~~~~~~R~e~v~~~~g~~~i~Ds~~t~~~s~~~al~~~~-----------------~~~i~vlG~~~~~~d 327 (418)
T PRK00683 265 ESFLEAVATFEKPPHRMEYLGEKDGVHYINDSKATTVSAVEKALLAVG-----------------NQVIVILGGRNKGCD 327 (418)
T ss_pred HHHHHHHHhCCCCCCceEEEeecCCeEEEEcCCCCCHHHHHHHHHhCC-----------------CCEEEEEcCCCCCCC
Confidence 67999999997 9999999975 56778888 8999999999987431 36799999 577789
Q ss_pred hhhhhhhhhcCCCCcEEEEcCCCCcccccccCCCCCcccccc-cccccCCHHHHHHHHHHHcCCC-ceEEeecCCCCCCc
Q psy15432 1093 PTKLLSPLLQSNQFEYILVTPNILTNEIRWRGQPLDEDWKST-VQSINISLAIQLAYLWMFRMNK-SAELKRNQSSLPMG 1170 (1255)
Q Consensus 1093 ~~~ll~~L~~~~~~d~vi~t~~~~~~~~~~~~~~~~~~~~~d-~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~ 1170 (1255)
.+.+++.+ . ...|.+++++......... +... ...+..+.++.++.+.....+. .+.+..|+.|++|-
T Consensus 328 ~~~l~~~~-~-~~~~~v~~~G~~~~~i~~~--------l~~~~~~~~~~~~~~a~~~~~~~~~~gd~VLlsp~~~s~d~f 397 (418)
T PRK00683 328 FSSLLPVL-R-QTAKHVVAMGECRQEIAQA--------LSEKFPLTVVKDLQEAVSCAQEIAQPGDVILLSPGCASFDQF 397 (418)
T ss_pred HHHHHHHH-H-HhCCEEEEECCCHHHHHHH--------HhcCCCEEEeCCHHHHHHHHHHhCCCCCEEEECchhcccccc
Confidence 98888887 3 3488899887442211111 1110 1233457888888887766555 45559999999987
Q ss_pred cc
Q psy15432 1171 PH 1172 (1255)
Q Consensus 1171 ~~ 1172 (1255)
+-
T Consensus 398 ~~ 399 (418)
T PRK00683 398 RS 399 (418)
T ss_pred cC
Confidence 43
|
|
| >COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.4e-26 Score=272.93 Aligned_cols=218 Identities=17% Similarity=0.234 Sum_probs=164.7
Q ss_pred CccEEEEcCCCChhHHHHHHHHHHHHCCCCeEEEcCCcccccceeEEeCCeecChhhhhhHHHHHHHHHHhhhhccCCcc
Q psy15432 107 KLNVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTKYFWTVYNALHAKRKHAEDMP 186 (1255)
Q Consensus 107 ~l~vIhVtGTnGKgST~a~l~sIL~~~G~k~Gl~tSPhL~~~rERI~InG~~is~~~ft~~~~~v~~~l~~~~~~~~~~p 186 (1255)
..|+|+||||||||||++|+++||+++|+++.+-+.. |.|..+
T Consensus 109 ~~p~vaITGTNGKTTTTsli~~~l~~~G~~~~lgGNI------------G~p~l~------------------------- 151 (448)
T COG0771 109 EAPIVAITGTNGKTTTTSLIAHLLKAAGLDALLGGNI------------GTPALE------------------------- 151 (448)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHHhcCCCceecccc------------CccHHH-------------------------
Confidence 3469999999999999999999999999988775543 233221
Q ss_pred hHHHHHHHHhhhhhhccCCCEEEEeeccCCccccccccCCccEEEEcCCCcchhhhcCCCHHHHHHHHHcccCCCc-eee
Q psy15432 187 AYFKFLTVMSFYVFVKEKPDAVIMEVGIGGRYDNTNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIMKPNC-IAV 265 (1255)
Q Consensus 187 ~~Fe~Lt~~A~~~F~~~~vD~aVlEvG~GGr~D~tnii~~P~v~vITnIg~DHld~lG~Tle~Ia~~KagI~k~g~-~~v 265 (1255)
++. .....|+.|+|+++-..-..-++ +|.+++||||+.||+|||| ++++|...|+.|++... .+|
T Consensus 152 ----~~~-------~~~~~d~~VlElSSfQL~~~~~~--~P~iavilNi~~DHLD~H~-s~e~Y~~aK~~i~~~~~~~~V 217 (448)
T COG0771 152 ----LLE-------QAEPADVYVLELSSFQLETTSSL--RPEIAVILNISEDHLDRHG-SMENYAAAKLRILEGQTEVAV 217 (448)
T ss_pred ----hhc-------ccCCCCEEEEEccccccccCccC--CccEEEEecCCHHHhhhcc-CHHHHHHHHHHHHcCCccEEE
Confidence 000 13578999999999976666666 8999999999999999999 99999999999998777 566
Q ss_pred eccCCCchHHHHHHHhhhccCceEEEcCCc---ceeeecCc----------ccccCCCchhHHhhHHHHHHHHHHHHHhh
Q psy15432 266 TSANQRGPCKQILLETSRALNCVLLEAPSI---LNYRWRGQ----------PLDEDWKSTVQSINISLAIQLAYLWMFRM 332 (1255)
Q Consensus 266 ~~~~q~~e~~~vl~~~a~~~~~~l~~~~~~---~~~~~~~~----------~i~l~l~G~~q~~Na~lAia~a~~~l~~~ 332 (1255)
++. |++....+...........+..... ..|...+. .-.++++|.||..|+++|+++|+..
T Consensus 218 in~--dd~~~~~~~~~~~~~~~~~fs~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~l~G~hn~~N~lAa~a~a~~~---- 291 (448)
T COG0771 218 INA--DDAYLKTLADEATKARVIWFSFGEPLADGDYIYDGKLVFKGEKLLPADELKLPGAHNLENALAALALARAL---- 291 (448)
T ss_pred EeC--CcHHHhhhhhhcccceeEEEEccccccccceeecchhccccccccchhhcCCcchhhHHHHHHHHHHHHHc----
Confidence 665 4444433333322212222332221 11111111 2368999999999999999999765
Q ss_pred ccchhhhhHHHHhhhhhccCCCCCCCCCCCCCCccCCCCCCCCccccCCCCCCCCccccccccCCCCCCCChHHHHHHHh
Q psy15432 333 NKSAELKSVIDKFLAEMRVSSPNETPGGQGHLSSCETPGGQGHLSFSETPGGQGHLTGNQSSLLMGPHFEIDPKTYRGIK 412 (1255)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~e~i~~gL~ 412 (1255)
|++ ++++.++|+
T Consensus 292 -------------------------------------------------------------------gv~-~e~i~~~L~ 303 (448)
T COG0771 292 -------------------------------------------------------------------GVP-PEAILEALS 303 (448)
T ss_pred -------------------------------------------------------------------CCC-HHHHHHHHH
Confidence 667 999999999
Q ss_pred cCC-CCCceEEEEe-cCcEEEEcc-CCCHHHHHHHHHHHH
Q psy15432 413 ACV-WPGRVQVIRK-NNFKYFLDG-AHTTDSIELCAKWFL 449 (1255)
Q Consensus 413 ~~~-~pGR~e~v~~-~~~~vilDg-AHnp~si~~~l~~l~ 449 (1255)
+|+ +|+|||.+.. +++.||.|. |.|+++..+++..|.
T Consensus 304 ~F~gl~HR~e~v~~~~gv~f~NDSKATN~~At~~AL~~~~ 343 (448)
T COG0771 304 SFTGLPHRLEFVGEKDGVLFINDSKATNVDATLAALSGFD 343 (448)
T ss_pred hCCCCCcceEEEEecCCEEEecCCCCCCHHHHHHHHHcCC
Confidence 999 9999999986 578899996 999999999987664
|
|
| >COG0773 MurC UDP-N-acetylmuramate-alanine ligase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.6e-26 Score=265.93 Aligned_cols=276 Identities=17% Similarity=0.165 Sum_probs=198.0
Q ss_pred HHHHHHHhcCCccCCCCccEEEEcCCCChhHHHHHHHHHHHHCCCCeEEEcCCcccccceeEEeCCeecChhhhhhHHHH
Q psy15432 91 VVQYLGHLNITLDDIKKLNVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTKYFWT 170 (1255)
Q Consensus 91 ~~~~L~~Lg~~~~~~~~l~vIhVtGTnGKgST~a~l~sIL~~~G~k~Gl~tSPhL~~~rERI~InG~~is~~~ft~~~~~ 170 (1255)
=.++|+.|-... ..|+||||+|||||++|+++||.++|+..++... |.+-.-..-+
T Consensus 96 r~e~Laelm~~~------~~iaVaGTHGKTTTTsmla~vl~~~gldPtf~iG-------------G~~~~~g~na----- 151 (459)
T COG0773 96 RAEMLAELMRFR------TSIAVAGTHGKTTTTSMLAWVLEAAGLDPTFLIG-------------GILKNFGTNA----- 151 (459)
T ss_pred HHHHHHHHHhCC------eeEEEeCCCCchhHHHHHHHHHHhCCCCCEEEEC-------------cccccCCccc-----
Confidence 345666665543 6999999999999999999999999987665433 3221111100
Q ss_pred HHHHHHhhhhccCCcchHHHHHHHHhhhhhhccCCCEEEEeeccCCccccccccCCccEEEEcCCCcchhhhcCCCHHHH
Q psy15432 171 VYNALHAKRKHAEDMPAYFKFLTVMSFYVFVKEKPDAVIMEVGIGGRYDNTNIIPNTAVVGITSLGYDHTAVLGNTIEEI 250 (1255)
Q Consensus 171 v~~~l~~~~~~~~~~p~~Fe~Lt~~A~~~F~~~~vD~aVlEvG~GGr~D~tnii~~P~v~vITnIg~DHld~lG~Tle~I 250 (1255)
....-++.|.|+ .++|+.-+-.+|.++|||||..||+|++| ++++|
T Consensus 152 ------------------------------~~g~~~~fV~EA---DEsD~sFl~~~P~~aIvTNid~DH~D~y~-~~~~i 197 (459)
T COG0773 152 ------------------------------RLGSGDYFVAEA---DESDSSFLHYNPRVAIVTNIEFDHLDYYG-DLEAI 197 (459)
T ss_pred ------------------------------ccCCCceEEEEe---cccccccccCCCCEEEEeCCCcchhhhhC-CHHHH
Confidence 112338999998 78898888779999999999999999999 99999
Q ss_pred HHHHHcccC---CCceeeeccCCCchHHHHHHHhhhccCceEEEcCCcceee----------------ecC---cccccC
Q psy15432 251 TMQKAGIMK---PNCIAVTSANQRGPCKQILLETSRALNCVLLEAPSILNYR----------------WRG---QPLDED 308 (1255)
Q Consensus 251 a~~KagI~k---~g~~~v~~~~q~~e~~~vl~~~a~~~~~~l~~~~~~~~~~----------------~~~---~~i~l~ 308 (1255)
..+...+++ ..+.+|++. +|+...+++...+. .....|..+...++. ..+ .++.++
T Consensus 198 ~~~F~~f~~~vp~~G~~v~~~-dd~~l~~l~~~~~~-~~v~tyG~~~~ad~~a~ni~~~~~~~~F~V~~~g~~~~~~~l~ 275 (459)
T COG0773 198 KQAFHHFVRNVPFYGRAVVCG-DDPNLRELLSRGCW-SPVVTYGFDDEADWRAENIRQDGSGTTFDVLFRGEELGEVKLP 275 (459)
T ss_pred HHHHHHHHHhCCccceEEEEC-CCHHHHHHHhcccC-CcEEeecCCCcCcEEEEEeEEeccccEEEEEEcCceeEEEEEc
Confidence 888777763 445567776 56655555543322 112233333111221 111 257899
Q ss_pred CCchhHHhhHHHHHHHHHHHHHhhccchhhhhHHHHhhhhhccCCCCCCCCCCCCCCccCCCCCCCCccccCCCCCCCCc
Q psy15432 309 WKSTVQSINISLAIQLAYLWMFRMNKSAELKSVIDKFLAEMRVSSPNETPGGQGHLSSCETPGGQGHLSFSETPGGQGHL 388 (1255)
Q Consensus 309 l~G~~q~~Na~lAia~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (1255)
++|.||+.||++|+++|..+
T Consensus 276 ~pG~HNvlNAlaaia~a~~~------------------------------------------------------------ 295 (459)
T COG0773 276 LPGRHNVLNALAAIAVAREL------------------------------------------------------------ 295 (459)
T ss_pred CCchhhHHHHHHHHHHHHHc------------------------------------------------------------
Confidence 99999999999999999765
Q ss_pred cccccccCCCCCCCChHHHHHHHhcCC-CCCceEEEEe-cCcEEEEccCCCHHHHHHHHHHHHhhhhcccccCccCCCCC
Q psy15432 389 TGNQSSLLMGPHFEIDPKTYRGIKACV-WPGRVQVIRK-NNFKYFLDGAHTTDSIELCAKWFLRKSEAEASSSRSVSSCP 466 (1255)
Q Consensus 389 ~~~~~~l~~~~~~~l~e~i~~gL~~~~-~pGR~e~v~~-~~~~vilDgAHnp~si~~~l~~l~~~~~~~~~~~~~~~~~~ 466 (1255)
|++ .++|+++|++|+ +..|||+... +++++|.||||+|..+.+.++.+|+..+.
T Consensus 296 -----------Gi~-~~~i~~aL~~F~GvkRRfe~~g~~~~~~viDDYaHHPtEI~aTL~aaR~~~~~------------ 351 (459)
T COG0773 296 -----------GID-PEAIAEALASFQGVKRRFELKGEVNGVTVIDDYAHHPTEIKATLAAARQKVPG------------ 351 (459)
T ss_pred -----------CCC-HHHHHHHHHhCCCcceeeEEeeeECCEEEEecCCCCHHHHHHHHHHHHHhcCC------------
Confidence 677 999999999999 9999997764 57889999999999999999999987653
Q ss_pred CCCCccCCCCCccEEEEEecCCCCChhhhhHHhh-ccCCCcEEEEcCCCCCCCCC
Q psy15432 467 LDPTQSKSSNVIQRILVFNVTGERDPTKLLSPLL-QSNQFEYILVTPNILTNESS 520 (1255)
Q Consensus 467 ~~~~~~~~~~~~~~ilVfg~~~drD~~~ll~~L~-~~~~~d~vi~t~~~~~~~~~ 520 (1255)
.+|+++||-.-.-.-...++..+. +-..+|.|++++-.+-.|.+
T Consensus 352 ----------~~rIvaifQPHrySRt~~~~~dF~~~l~~AD~v~l~~VY~A~e~~ 396 (459)
T COG0773 352 ----------GKRIVAVFQPHRYSRTRDLLDDFAKALSDADEVILLDVYAAGEEP 396 (459)
T ss_pred ----------CceEEEEECCCchHhHHHHHHHHHHHHhcCCEEEEecccccCCCC
Confidence 128999997543322223333332 12568999999866665553
|
|
| >PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.1e-26 Score=278.00 Aligned_cols=246 Identities=16% Similarity=0.147 Sum_probs=175.7
Q ss_pred cEEEEcCCCChhHHHHHHHHHHHHCCCCeEEEcCCcccccceeEEeCCeecChhhhhhHHHHHHHHHHhhhhccCCcchH
Q psy15432 109 NVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTKYFWTVYNALHAKRKHAEDMPAY 188 (1255)
Q Consensus 109 ~vIhVtGTnGKgST~a~l~sIL~~~G~k~Gl~tSPhL~~~rERI~InG~~is~~~ft~~~~~v~~~l~~~~~~~~~~p~~ 188 (1255)
++|+||||||||||+.|+++||+.+|.++++-++- |.|.
T Consensus 109 ~~I~VTGTnGKTTTt~ll~~iL~~~g~~~~~~gni------------G~~~----------------------------- 147 (438)
T PRK04663 109 PVIAITGSNGKSTVTDLTGVMAKAAGVKVAVGGNI------------GVPA----------------------------- 147 (438)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHHHCCCCEEEEccc------------CHHH-----------------------------
Confidence 79999999999999999999999999987654431 1111
Q ss_pred HHHHHHHhhhhhhccCCCEEEEeeccCCccccccccCCccEEEEcCCCcchhhhcCCCHHHHHHHHHcccCCCceeeecc
Q psy15432 189 FKFLTVMSFYVFVKEKPDAVIMEVGIGGRYDNTNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIMKPNCIAVTSA 268 (1255)
Q Consensus 189 Fe~Lt~~A~~~F~~~~vD~aVlEvG~GGr~D~tnii~~P~v~vITnIg~DHld~lG~Tle~Ia~~KagI~k~g~~~v~~~ 268 (1255)
+. ....+.|++|+|+|+.+. +.+..+ +|+++|||||+.||+|+|| |+|+|+.+|..|++....+|++.
T Consensus 148 ---~~------~~~~~~~~~V~E~ss~~l-~~~~~~-~p~iavitNi~~dHld~~g-s~e~y~~aK~~i~~~~~~~v~n~ 215 (438)
T PRK04663 148 ---LD------LLEQDAELYVLELSSFQL-ETTSSL-KLKAAAFLNLSEDHMDRYQ-GMEDYRQAKLRIFDHAELAVVNR 215 (438)
T ss_pred ---Hh------hhcCCCCEEEEEcChhhh-ccCccc-CCCEEEEecCChhhCcccC-CHHHHHHHHHHHHhCCCEEEEeC
Confidence 00 024567999999999974 234444 7999999999999999999 99999999999998755677776
Q ss_pred CCCchHHHHHHHhhhccCceEEEcCC---------cceeeec-Cc----ccccCCCchhHHhhHHHHHHHHHHHHHhhcc
Q psy15432 269 NQRGPCKQILLETSRALNCVLLEAPS---------ILNYRWR-GQ----PLDEDWKSTVQSINISLAIQLAYLWMFRMNK 334 (1255)
Q Consensus 269 ~q~~e~~~vl~~~a~~~~~~l~~~~~---------~~~~~~~-~~----~i~l~l~G~~q~~Na~lAia~a~~~l~~~~~ 334 (1255)
+++...... . ...+..|.... ...+... +. .+.++++|.||++|+++|++++..+
T Consensus 216 -dd~~~~~~~-~---~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~hNv~NalaAia~a~~l------ 284 (438)
T PRK04663 216 -DDKQTYPDH-A---ELQLVTFGFDQQDFGLAQHQGREWLADNGQPVLASAELKLVGRHNVANVLVVLALLDAA------ 284 (438)
T ss_pred -CCHHHHhhh-c---CCcEEEEecCCCCCCeEecCCeEEEEeCCceeeehhhcCCcchhhHHHHHHHHHHHHHc------
Confidence 444322211 1 11111222110 0111111 11 3678999999999999999988765
Q ss_pred chhhhhHHHHhhhhhccCCCCCCCCCCCCCCccCCCCCCCCccccCCCCCCCCccccccccCCCCCCCChHHHHHHHhcC
Q psy15432 335 SAELKSVIDKFLAEMRVSSPNETPGGQGHLSSCETPGGQGHLSFSETPGGQGHLTGNQSSLLMGPHFEIDPKTYRGIKAC 414 (1255)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~e~i~~gL~~~ 414 (1255)
|++ +++|.++|++|
T Consensus 285 -----------------------------------------------------------------Gi~-~~~i~~~L~~f 298 (438)
T PRK04663 285 -----------------------------------------------------------------GVD-YRKALDALKSY 298 (438)
T ss_pred -----------------------------------------------------------------CCC-HHHHHHHHHhC
Confidence 667 89999999999
Q ss_pred C-CCCceEEEEe-cCcEEEEc-cCCCHHHHHHHHHHHHhhhhcccccCccCCCCCCCCCccCCCCCccEEEEEecCC-CC
Q psy15432 415 V-WPGRVQVIRK-NNFKYFLD-GAHTTDSIELCAKWFLRKSEAEASSSRSVSSCPLDPTQSKSSNVIQRILVFNVTG-ER 490 (1255)
Q Consensus 415 ~-~pGR~e~v~~-~~~~vilD-gAHnp~si~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilVfg~~~-dr 490 (1255)
+ +|||||++.. +++.+|.| +++||+|+.++++.+. .. .++|+|+|.+. ..
T Consensus 299 ~g~~~R~e~v~~~~g~~~idDs~~tn~~s~~~Al~~~~---~~-----------------------~~~i~IlGg~~~~~ 352 (438)
T PRK04663 299 TGLTHRCQVVADNHGIKWVNDSKATNVASTLAALSGLE---IE-----------------------GKLYLLVGGVGKGA 352 (438)
T ss_pred CCCCCceEEeeeeCCcEEEeCCCcCCHHHHHHHHHhcc---cC-----------------------CcEEEEECCccCCC
Confidence 9 9999999975 46666776 6899999999988763 11 16899999773 34
Q ss_pred ChhhhhHHhhccCCCcEEEEcC
Q psy15432 491 DPTKLLSPLLQSNQFEYILVTP 512 (1255)
Q Consensus 491 D~~~ll~~L~~~~~~d~vi~t~ 512 (1255)
|...+.+.+ ... .+.|++..
T Consensus 353 ~~~~l~~~~-~~~-~~~vi~~G 372 (438)
T PRK04663 353 DFSPLKPVL-ATL-NLQLCCFG 372 (438)
T ss_pred CHHHHHHHH-Hhh-CcEEEEEC
Confidence 777766666 322 24666653
|
|
| >PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.1e-26 Score=296.70 Aligned_cols=257 Identities=14% Similarity=0.107 Sum_probs=174.1
Q ss_pred eEEEecCCCCCccHHHHHHHHHHHCCCCeEEEcCcccccccceeeeCCeecChhhhhhHHHHHHHHHHHHhhcCCCCCcH
Q psy15432 721 NVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTKYFWTVYNALHAKRKHAEDMPAY 800 (1255)
Q Consensus 721 ~vIhVTGTnGKgST~aml~sILr~~G~rtGl~tSPhL~~~~ERI~InG~pIs~~~f~~~~~~v~~~l~~~~~~~~~~pt~ 800 (1255)
++|+||||||||||++|+.+||+++|++...+. .+ .+|.|+..
T Consensus 105 ~~IaITGTnGKTTTt~li~~iL~~~g~~~~~~~-gG---------~~g~~~~~--------------------------- 147 (809)
T PRK14573 105 ISILVSGSHGKTTVSSLITAIFQEAKKDPSYAI-GG---------LNQEGLNG--------------------------- 147 (809)
T ss_pred CEEEEECCCCHHHHHHHHHHHHHhCCCCCeEEE-CC---------cccccccc---------------------------
Confidence 699999999999999999999999998643332 11 12333321
Q ss_pred HHHHHHHHHHhhhcCCCCEEEEecccCCccccccccCCCcEEEEcCCCchhhhhcCCCHHHHHHHHhcccc---CCceEE
Q psy15432 801 FKFLTVMSFYVFVKEKPDAVIMEVGIGGRYDNTNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIMK---PNCIAV 877 (1255)
Q Consensus 801 Fe~lT~mAf~~F~~~~vD~aVlEVG~GGr~D~TNvi~~P~VavITnIg~DHl~~LG~TleeIA~~KagI~K---~g~~av 877 (1255)
...+.|++|+|+|+.. -+.. . .+|+++|||||+.||+++++.|+|+|+.+|..+++ ++..+|
T Consensus 148 ------------~~~~~d~~V~E~ss~~-~~~~-~-~~P~iaViTNI~~DHLd~~~gs~e~y~~ak~~~~~~~~~~~~~V 212 (809)
T PRK14573 148 ------------YSGSSEYFVAEADESD-GSLK-H-YTPEFSVITNIDNEHLSNFEGDRELLLASIQDFARKVQQINKCF 212 (809)
T ss_pred ------------ccCCCCEEEEECCCCc-chhh-e-eecCEEEEeCCChhhhhhhcCCHHHHHHHHHHHHhcCCCCCEEE
Confidence 1124699999999872 2222 2 37999999999999999884499999999988874 456788
Q ss_pred EccCCCChhHHHHHHHhhhc----CCeEE----EcCCc-cceec--cC---CccccCCCchhHHHHHHHHHHHHHHHHHh
Q psy15432 878 TSANQRGPCKQILLETSRAL----NCVLL----EAPSI-LNYRW--RG---QPLDEDWKSTVQSINISLAIQLAYLWMFR 943 (1255)
Q Consensus 878 ~~~~qd~~~~~vl~~~A~~~----~~~l~----~~~~~-~~~~~--~~---~~v~l~L~G~hq~~Na~lAiala~~~l~~ 943 (1255)
++. +++....... .... .+.+. ..... ..+.+ .+ ..+.++++|.||..|+++|++++..
T Consensus 213 ~N~-Dd~~~~~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~f~l~~~~~~~~~~~l~l~G~hn~~Na~aAia~~~~---- 285 (809)
T PRK14573 213 YNG-DCPRLKGCLQ--GHSYGFSSSCDLHILSYYQEGWRSYFSAKFLGVVYQDIELNLVGMHNVANAAAAMGIALT---- 285 (809)
T ss_pred EeC-CCHHHHhhcc--cEEEccCCCCcEEEEEEEecCCeEEEEEEECCceEEEEEeccccHhhHHHHHHHHHHHHH----
Confidence 887 4432222110 0000 01110 00100 01111 11 2356789999999999999998865
Q ss_pred hcchhhhhhHHHHHhhhhhcCCCCCCCCCCCCCCcCCCCCCCCCccccCCCCCCCCcccccccccCCCCCCCC-HHHHHH
Q psy15432 944 MNKSAELKSVIDKFLAEMRVSSPNETPGGQGHLSSCETPGGQGHLSFSETPGGQGHLTGNQSSLLMGPHFEID-PKTYRG 1022 (1255)
Q Consensus 944 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~i~-~~i~~g 1022 (1255)
+|++ +.+.+|
T Consensus 286 ---------------------------------------------------------------------lgi~~~~i~~~ 296 (809)
T PRK14573 286 ---------------------------------------------------------------------LGIDEGAIRNA 296 (809)
T ss_pred ---------------------------------------------------------------------cCCCHHHHHHH
Confidence 4566 679999
Q ss_pred HhcCC-CCCcEEEEee-cCcEEEEEcCcCHHHHHHHHHHHHhhhccccCCCcccCCCCCcEEEEEecCCCCChhhhhhhh
Q psy15432 1023 IKACV-WPGRVQVIRK-NNFKYFLDGAHTTDSIELCAKWFLRKSEAEANPTQSKSSNVIQRILVFNVTGERDPTKLLSPL 1100 (1255)
Q Consensus 1023 L~~~~-~pGR~E~v~~-~~~~vilDgAHNP~S~~a~l~~l~~~~~~~~~~~~~~~~~~~~~vlVfg~~~drD~~~ll~~L 1100 (1255)
|++|. ||||||++.. +++.+|+||||||+|+++++++++.... .+++++||+.-.++....++..+
T Consensus 297 L~~f~~~~~R~e~~~~~~~~~~i~D~ahnP~~~~a~l~~l~~~~~------------~~rli~vf~~~~~~~~~~~~~~~ 364 (809)
T PRK14573 297 LKGFSGVQRRLERKNSSETFLFLEDYAHHPSEISCTLRAVRDAVG------------LRRIIAICQPHRFSRLRECLDSF 364 (809)
T ss_pred HHhCCCCCCCCEEEeccCCcEEEEECCCCHHHHHHHHHHHHhhcC------------CCEEEEEEcCCcchhHHHHHHHH
Confidence 99999 9999999976 4568999999999999999999986431 24678899644443333333322
Q ss_pred hc-CCCCcEEEEcCCCCc
Q psy15432 1101 LQ-SNQFEYILVTPNILT 1117 (1255)
Q Consensus 1101 ~~-~~~~d~vi~t~~~~~ 1117 (1255)
.. -..+|.+++|+..+.
T Consensus 365 ~~~l~~~d~vilt~~~~~ 382 (809)
T PRK14573 365 PSAFQDADEVILTDVYSA 382 (809)
T ss_pred HHHHHHCCEEEECCccCC
Confidence 10 123899999887653
|
|
| >PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.5e-26 Score=274.20 Aligned_cols=249 Identities=18% Similarity=0.173 Sum_probs=174.1
Q ss_pred CccEEEEcCCCChhHHHHHHHHHHHHCCCCeEEEcCCcccccceeEEeCCeecChhhhhhHHHHHHHHHHhhhhccCCcc
Q psy15432 107 KLNVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTKYFWTVYNALHAKRKHAEDMP 186 (1255)
Q Consensus 107 ~l~vIhVtGTnGKgST~a~l~sIL~~~G~k~Gl~tSPhL~~~rERI~InG~~is~~~ft~~~~~v~~~l~~~~~~~~~~p 186 (1255)
+.++|+||||||||||+.|+.+||+..|+++.+-++ | |.|+.
T Consensus 116 ~~~vIaITGTnGKTTT~~ll~~iL~~~g~~~~~~gn---------i---G~p~~-------------------------- 157 (458)
T PRK01710 116 PAKVFGVTGSDGKTTTTTLIYEMLKEEGYKTWVGGN---------I---GTPLF-------------------------- 157 (458)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHhCCCCEEECCc---------c---ChhHH--------------------------
Confidence 347999999999999999999999999988643222 1 22221
Q ss_pred hHHHHHHHHhhhhhhccCCCEEEEeeccCCccccccccCCccEEEEcCCCcchhhhcCCCHHHHHHHHHcccC---CCce
Q psy15432 187 AYFKFLTVMSFYVFVKEKPDAVIMEVGIGGRYDNTNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIMK---PNCI 263 (1255)
Q Consensus 187 ~~Fe~Lt~~A~~~F~~~~vD~aVlEvG~GGr~D~tnii~~P~v~vITnIg~DHld~lG~Tle~Ia~~KagI~k---~g~~ 263 (1255)
..+. .....|++|+|+|+....+. .+ +|+++|||||+.||+++|| |+|+|+.+|..|++ ++..
T Consensus 158 ---~~~~-------~~~~~~~~VlE~~~~~~~~~-~~--~PdiaViTNI~~dHld~~~-s~e~~~~aK~~i~~~~~~~~~ 223 (458)
T PRK01710 158 ---SNIE-------EIKEEDKVVLELSSFQLMTM-DV--SPEVAVVTNLSPNHLDVHK-DMEEYIDAKKNIFKYQSENDL 223 (458)
T ss_pred ---HHHh-------hCCCCCEEEEEcCccccccC-CC--CCCEEEEecCChhhccccC-CHHHHHHHHHHHHhcCCCCCE
Confidence 0000 11257999999999844332 23 7999999999999999999 99999999999985 4556
Q ss_pred eeeccCCCchHHHHHHHhhhccCceEEEcCCc---ce------eeecC----cccccCCCchhHHhhHHHHHHHHHHHHH
Q psy15432 264 AVTSANQRGPCKQILLETSRALNCVLLEAPSI---LN------YRWRG----QPLDEDWKSTVQSINISLAIQLAYLWMF 330 (1255)
Q Consensus 264 ~v~~~~q~~e~~~vl~~~a~~~~~~l~~~~~~---~~------~~~~~----~~i~l~l~G~~q~~Na~lAia~a~~~l~ 330 (1255)
+|++. +++ ....+...+.. .+..+..... .. +.+.+ ..+.++++|.||++|+++|++++..
T Consensus 224 ~v~n~-Dd~-~~~~~~~~~~~-~~~~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~hnv~NalaA~a~a~~--- 297 (458)
T PRK01710 224 LVLNK-DNE-ITNGMEKEAKG-DVVKFSRKEKVYEGAYLKNGKLYIRGKEVCKKDDIKLKGMHNVENLLAAFCAVND--- 297 (458)
T ss_pred EEEeC-CcH-HHHHHHhhcCC-cEEEEeCCCCCCCceEEeCCEEEEcCceEEEhhhcCCccHhHHHHHHHHHHHHHh---
Confidence 77776 444 33333322211 1122222110 01 11111 1367899999999999999987743
Q ss_pred hhccchhhhhHHHHhhhhhccCCCCCCCCCCCCCCccCCCCCCCCccccCCCCCCCCccccccccCCCCCCCChHHHHHH
Q psy15432 331 RMNKSAELKSVIDKFLAEMRVSSPNETPGGQGHLSSCETPGGQGHLSFSETPGGQGHLTGNQSSLLMGPHFEIDPKTYRG 410 (1255)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~e~i~~g 410 (1255)
.++ ++.+.++
T Consensus 298 ---------------------------------------------------------------------~i~-~~~i~~~ 307 (458)
T PRK01710 298 ---------------------------------------------------------------------DVS-IESMKKV 307 (458)
T ss_pred ---------------------------------------------------------------------CCC-HHHHHHH
Confidence 234 8899999
Q ss_pred HhcCC-CCCceEEEEe-cCcEEEEc-cCCCHHHHHHHHHHHHhhhhcccccCccCCCCCCCCCccCCCCCccEEEEEecC
Q psy15432 411 IKACV-WPGRVQVIRK-NNFKYFLD-GAHTTDSIELCAKWFLRKSEAEASSSRSVSSCPLDPTQSKSSNVIQRILVFNVT 487 (1255)
Q Consensus 411 L~~~~-~pGR~e~v~~-~~~~vilD-gAHnp~si~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilVfg~~ 487 (1255)
|++|+ .+||||++.. ++.++|.| |+|||+|+.++++.+.. ++++|+|-.
T Consensus 308 L~~f~~~~~R~e~~~~~~g~~~i~Dsy~~np~s~~~al~~~~~----------------------------~~i~IlGg~ 359 (458)
T PRK01710 308 ATTFSGVEHRCEFVREINGVKYYNDSIASSPTRTLAGLKAFEK----------------------------PVILIAGGY 359 (458)
T ss_pred HHhCCCCCcceEEEEEECCEEEecccccCCHHHHHHHHHhCCC----------------------------CEEEEeCCc
Confidence 99999 9999999874 67788888 99999999999875521 478888832
Q ss_pred -CCCChhhhhHHhhccCCCcEEEEcCC
Q psy15432 488 -GERDPTKLLSPLLQSNQFEYILVTPN 513 (1255)
Q Consensus 488 -~drD~~~ll~~L~~~~~~d~vi~t~~ 513 (1255)
.+.++.++.+.+ + ...|.||++..
T Consensus 360 ~~~~~~~~l~~~~-~-~~~~~vi~~G~ 384 (458)
T PRK01710 360 DKKIPFEPLAEEG-Y-EKIKTLILMGA 384 (458)
T ss_pred CCCCCHHHHHHHH-H-hhccEEEEECC
Confidence 233677776665 3 44788888753
|
|
| >PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.6e-26 Score=269.77 Aligned_cols=255 Identities=17% Similarity=0.170 Sum_probs=177.4
Q ss_pred hHHHHHHHHHhcCCccCCCCccEEEEcCCCChhHHHHHHHHHHHHCCCCeEEEcCCcccccceeEEeCCeecChhhhhhH
Q psy15432 88 VDQVVQYLGHLNITLDDIKKLNVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTKY 167 (1255)
Q Consensus 88 l~~~~~~L~~Lg~~~~~~~~l~vIhVtGTnGKgST~a~l~sIL~~~G~k~Gl~tSPhL~~~rERI~InG~~is~~~ft~~ 167 (1255)
+.++..++..+.. .+.++|+||||||||||+.|+.+||+..|.++.+.++.. .|+
T Consensus 87 v~~~~~~~~~~~~-----~~~~~I~ITGT~GKTTTt~ml~~iL~~~g~~~~~~GniG------------~p~-------- 141 (418)
T PRK00683 87 VTDIQLAFQTPEF-----TRYPSLGITGSTGKTTTILFLEHLLKRLGIPAFAMGNIG------------IPI-------- 141 (418)
T ss_pred EEHHHHHHhhhhc-----CCCCEEEEECCCChHHHHHHHHHHHHHcCCCeEEECCcC------------HHH--------
Confidence 4555555554421 124799999999999999999999999998877777632 121
Q ss_pred HHHHHHHHHhhhhccCCcchHHHHHHHHhhhhhhccCCCEEEEeeccCCccccccccCCccEEEEcCCCcchhhhcCCCH
Q psy15432 168 FWTVYNALHAKRKHAEDMPAYFKFLTVMSFYVFVKEKPDAVIMEVGIGGRYDNTNIIPNTAVVGITSLGYDHTAVLGNTI 247 (1255)
Q Consensus 168 ~~~v~~~l~~~~~~~~~~p~~Fe~Lt~~A~~~F~~~~vD~aVlEvG~GGr~D~tnii~~P~v~vITnIg~DHld~lG~Tl 247 (1255)
+..+ .+.|++|+|+|+.+.-+.-..++.|+++|||||+.||+++|| |+
T Consensus 142 ------------------------l~~~-------~~~~~~V~E~~s~~~~~~~~~~~~~~iavitNi~~dHld~~~-s~ 189 (418)
T PRK00683 142 ------------------------LDGM-------QQPGVRVVEISSFQLADQEKSYPVLSGGMILNISDNHLDYHG-NL 189 (418)
T ss_pred ------------------------HHHh-------hcCCEEEEEechhhhCcCcccCCCccEEEEecCChhHhccCC-CH
Confidence 1111 236899999999965444445545689999999999999999 99
Q ss_pred HHHHHHHHcccCCCceeeeccCCCchHHHHHHHhhhccCceEEE-cCCcceeeecCcccccCCCchhHHhhHHHHHHHHH
Q psy15432 248 EEITMQKAGIMKPNCIAVTSANQRGPCKQILLETSRALNCVLLE-APSILNYRWRGQPLDEDWKSTVQSINISLAIQLAY 326 (1255)
Q Consensus 248 e~Ia~~KagI~k~g~~~v~~~~q~~e~~~vl~~~a~~~~~~l~~-~~~~~~~~~~~~~i~l~l~G~~q~~Na~lAia~a~ 326 (1255)
|+|+.+|+.|+.. +.+. ++.... . ....+..... .......... ...++++|.||.+|+++|++++.
T Consensus 190 e~y~~aK~~i~~~----~~~~--~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~--~~~~~~~g~hn~~Na~aA~a~~~ 257 (418)
T PRK00683 190 SAYFQAKQNIAKC----LRNP--DDLWVG---D-ERSYGHSYLEYVQEIMRLLDK--GSALKPLYLHDRYNYCAAYALAN 257 (418)
T ss_pred HHHHHHHHHHHHh----hhCc--cccccc---c-cCCcCceeecCcchhhhhhcc--ccccCCCccchHHHHHHHHHHHH
Confidence 9999999999852 1111 111000 0 0000000000 0000000001 12457889999999999999887
Q ss_pred HHHHhhccchhhhhHHHHhhhhhccCCCCCCCCCCCCCCccCCCCCCCCccccCCCCCCCCccccccccCCCCCCCChHH
Q psy15432 327 LWMFRMNKSAELKSVIDKFLAEMRVSSPNETPGGQGHLSSCETPGGQGHLSFSETPGGQGHLTGNQSSLLMGPHFEIDPK 406 (1255)
Q Consensus 327 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~e~ 406 (1255)
.++ +++ .++
T Consensus 258 ~l~----------------------------------------------------------------------g~~-~~~ 266 (418)
T PRK00683 258 EVF----------------------------------------------------------------------PIS-EES 266 (418)
T ss_pred Hhc----------------------------------------------------------------------CCC-HHH
Confidence 621 556 899
Q ss_pred HHHHHhcCC-CCCceEEEEe-cCcEEEEc-cCCCHHHHHHHHHHHHhhhhcccccCccCCCCCCCCCccCCCCCccEEEE
Q psy15432 407 TYRGIKACV-WPGRVQVIRK-NNFKYFLD-GAHTTDSIELCAKWFLRKSEAEASSSRSVSSCPLDPTQSKSSNVIQRILV 483 (1255)
Q Consensus 407 i~~gL~~~~-~pGR~e~v~~-~~~~vilD-gAHnp~si~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilV 483 (1255)
+.++|+++. ||||||++.. ++..+|.| |++||+|+.++++.+. +++++|
T Consensus 267 i~~~l~~~~~~~~R~e~v~~~~g~~~i~Ds~~t~~~s~~~al~~~~----------------------------~~~i~v 318 (418)
T PRK00683 267 FLEAVATFEKPPHRMEYLGEKDGVHYINDSKATTVSAVEKALLAVG----------------------------NQVIVI 318 (418)
T ss_pred HHHHHHhCCCCCCceEEEeecCCeEEEEcCCCCCHHHHHHHHHhCC----------------------------CCEEEE
Confidence 999999997 9999999975 56788888 8999999999887431 168999
Q ss_pred Ee-cCCCCChhhhhHHhhccCCCcEEEEcC
Q psy15432 484 FN-VTGERDPTKLLSPLLQSNQFEYILVTP 512 (1255)
Q Consensus 484 fg-~~~drD~~~ll~~L~~~~~~d~vi~t~ 512 (1255)
|| ...++|+.++++.+ . ...|.|+++.
T Consensus 319 lG~~~~~~d~~~l~~~~-~-~~~~~v~~~G 346 (418)
T PRK00683 319 LGGRNKGCDFSSLLPVL-R-QTAKHVVAMG 346 (418)
T ss_pred EcCCCCCCCHHHHHHHH-H-HhCCEEEEEC
Confidence 99 56788998888888 3 4488998883
|
|
| >COG0773 MurC UDP-N-acetylmuramate-alanine ligase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.5e-25 Score=258.62 Aligned_cols=301 Identities=16% Similarity=0.145 Sum_probs=212.1
Q ss_pred eEEEecCCCCCccHHHHHHHHHHHCCCCeEEEcCcccccccceeeeCCeecChhhhhhHHHHHHHHHHHHhhcCCCCCcH
Q psy15432 721 NVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTKYFWTVYNALHAKRKHAEDMPAY 800 (1255)
Q Consensus 721 ~vIhVTGTnGKgST~aml~sILr~~G~rtGl~tSPhL~~~~ERI~InG~pIs~~~f~~~~~~v~~~l~~~~~~~~~~pt~ 800 (1255)
..|+||||+|||||++|+++||.++|+.+++. |+|.+=.-.. .
T Consensus 108 ~~iaVaGTHGKTTTTsmla~vl~~~gldPtf~-------------iGG~~~~~g~---n--------------------- 150 (459)
T COG0773 108 TSIAVAGTHGKTTTTSMLAWVLEAAGLDPTFL-------------IGGILKNFGT---N--------------------- 150 (459)
T ss_pred eeEEEeCCCCchhHHHHHHHHHHhCCCCCEEE-------------ECcccccCCc---c---------------------
Confidence 68999999999999999999999999877655 3333211000 0
Q ss_pred HHHHHHHHHHhhhc-CCCCEEEEecccCCccccccccCCCcEEEEcCCCchhhhhcCCCHHHHHHHHhccc---cCCceE
Q psy15432 801 FKFLTVMSFYVFVK-EKPDAVIMEVGIGGRYDNTNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIM---KPNCIA 876 (1255)
Q Consensus 801 Fe~lT~mAf~~F~~-~~vD~aVlEVG~GGr~D~TNvi~~P~VavITnIg~DHl~~LG~TleeIA~~KagI~---K~g~~a 876 (1255)
.. ..-++.|.|. -++|+.-+--+|.++|||||..||+|++| ++++|-.+...++ +..+.+
T Consensus 151 ------------a~~g~~~~fV~EA---DEsD~sFl~~~P~~aIvTNid~DH~D~y~-~~~~i~~~F~~f~~~vp~~G~~ 214 (459)
T COG0773 151 ------------ARLGSGDYFVAEA---DESDSSFLHYNPRVAIVTNIEFDHLDYYG-DLEAIKQAFHHFVRNVPFYGRA 214 (459)
T ss_pred ------------cccCCCceEEEEe---cccccccccCCCCEEEEeCCCcchhhhhC-CHHHHHHHHHHHHHhCCccceE
Confidence 12 2238999999 89999888889999999999999999999 9999988877776 355667
Q ss_pred EEccCCCChhHHHHHHHhhhcCCeEEEcCCcc--ce----------------eccC---CccccCCCchhHHHHHHHHHH
Q psy15432 877 VTSANQRGPCKQILLETSRALNCVLLEAPSIL--NY----------------RWRG---QPLDEDWKSTVQSINISLAIQ 935 (1255)
Q Consensus 877 v~~~~qd~~~~~vl~~~A~~~~~~l~~~~~~~--~~----------------~~~~---~~v~l~L~G~hq~~Na~lAia 935 (1255)
|++. +|+...+++...+ +++++.++... ++ ...+ .++.++++|+||+.||++|++
T Consensus 215 v~~~-dd~~l~~l~~~~~---~~~v~tyG~~~~ad~~a~ni~~~~~~~~F~V~~~g~~~~~~~l~~pG~HNvlNAlaaia 290 (459)
T COG0773 215 VVCG-DDPNLRELLSRGC---WSPVVTYGFDDEADWRAENIRQDGSGTTFDVLFRGEELGEVKLPLPGRHNVLNALAAIA 290 (459)
T ss_pred EEEC-CCHHHHHHHhccc---CCcEEeecCCCcCcEEEEEeEEeccccEEEEEEcCceeEEEEEcCCchhhHHHHHHHHH
Confidence 7777 5555555454322 34444443221 11 1111 257899999999999999999
Q ss_pred HHHHHHHhhcchhhhhhHHHHHhhhhhcCCCCCCCCCCCCCCcCCCCCCCCCccccCCCCCCCCcccccccccCCCCCCC
Q psy15432 936 LAYLWMFRMNKSAELKSVIDKFLAEMRVSSPNETPGGQGHLSSCETPGGQGHLSFSETPGGQGHLTGNQSSLLMGPHFEI 1015 (1255)
Q Consensus 936 la~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~i 1015 (1255)
+|.. +|+
T Consensus 291 ~a~~-------------------------------------------------------------------------~Gi 297 (459)
T COG0773 291 VARE-------------------------------------------------------------------------LGI 297 (459)
T ss_pred HHHH-------------------------------------------------------------------------cCC
Confidence 9886 567
Q ss_pred C-HHHHHHHhcCC-CCCcEEEEee-cCcEEEEEcCcCHHHHHHHHHHHHhhhccccCCCcccCCCCCcEEEEEecCCCCC
Q psy15432 1016 D-PKTYRGIKACV-WPGRVQVIRK-NNFKYFLDGAHTTDSIELCAKWFLRKSEAEANPTQSKSSNVIQRILVFNVTGERD 1092 (1255)
Q Consensus 1016 ~-~~i~~gL~~~~-~pGR~E~v~~-~~~~vilDgAHNP~S~~a~l~~l~~~~~~~~~~~~~~~~~~~~~vlVfg~~~drD 1092 (1255)
+ +.|+++|++|+ +..|||++.. +++++|.||||+|..+++.++.++.... ..+++|+||-.-.-.-
T Consensus 298 ~~~~i~~aL~~F~GvkRRfe~~g~~~~~~viDDYaHHPtEI~aTL~aaR~~~~-----------~~~rIvaifQPHrySR 366 (459)
T COG0773 298 DPEAIAEALASFQGVKRRFELKGEVNGVTVIDDYAHHPTEIKATLAAARQKVP-----------GGKRIVAVFQPHRYSR 366 (459)
T ss_pred CHHHHHHHHHhCCCcceeeEEeeeECCEEEEecCCCCHHHHHHHHHHHHHhcC-----------CCceEEEEECCCchHh
Confidence 6 77999999999 9999997765 5677888899999999999999998652 1257888986433322
Q ss_pred hhhhhhhhh-cCCCCcEEEEcCCCCcccccccCCCCCcccccc-------ccccc--CCHHHHHHHHHHHcCCCceEEee
Q psy15432 1093 PTKLLSPLL-QSNQFEYILVTPNILTNEIRWRGQPLDEDWKST-------VQSIN--ISLAIQLAYLWMFRMNKSAELKR 1162 (1255)
Q Consensus 1093 ~~~ll~~L~-~~~~~d~vi~t~~~~~~~~~~~~~~~~~~~~~d-------~~~~~--~~~~~~~~~~~~~~~~~~~~l~~ 1162 (1255)
...+++... +-..+|.|++++-.+..+.+. ..+|++. +..+. .+.++....+-...++.+++|.-
T Consensus 367 t~~~~~dF~~~l~~AD~v~l~~VY~A~e~~~-----~g~~~~~~l~~~i~~~~~~~~~~~~~~~~~l~~~~~~gD~il~m 441 (459)
T COG0773 367 TRDLLDDFAKALSDADEVILLDVYAAGEEPI-----EGDVSSEDLAEKIRQPGHVDVPDLDDLVELLAKVAQPGDVILFM 441 (459)
T ss_pred HHHHHHHHHHHHhcCCEEEEecccccCCCCC-----cCCccHHHHHHHhhcCCcccCCCHHHHHHHHHhhCCCCCEEEEe
Confidence 223333332 124589999998555444322 2334441 11222 25667777777777888888887
Q ss_pred cCCCC
Q psy15432 1163 NQSSL 1167 (1255)
Q Consensus 1163 ~~~~~ 1167 (1255)
|-.+.
T Consensus 442 GAGdi 446 (459)
T COG0773 442 GAGDI 446 (459)
T ss_pred cCCcH
Confidence 76654
|
|
| >PRK03815 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.4e-23 Score=246.22 Aligned_cols=287 Identities=15% Similarity=0.132 Sum_probs=187.0
Q ss_pred eEEEecCCCCCccHHHHHHHHHHHCCCCeEEEcCcccccccceeeeCCeecChhhhhhHHHHHHHHHHHHhhcCCCCCcH
Q psy15432 721 NVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTKYFWTVYNALHAKRKHAEDMPAY 800 (1255)
Q Consensus 721 ~vIhVTGTnGKgST~aml~sILr~~G~rtGl~tSPhL~~~~ERI~InG~pIs~~~f~~~~~~v~~~l~~~~~~~~~~pt~ 800 (1255)
++|+||||||||||++|+++||+.+|..+|- + | |.|++.
T Consensus 90 ~~i~ITGT~GKTTTt~ml~~iL~~~g~~~~g--n---------i---G~p~~~--------------------------- 128 (401)
T PRK03815 90 FSIWISGTNGKTTTTQMTTHLLEDFGAVSGG--N---------I---GTPLAE--------------------------- 128 (401)
T ss_pred CEEEEECCCcHHHHHHHHHHHHHHCCCcEEE--E---------e---cHhHHh---------------------------
Confidence 4899999999999999999999999843321 0 2 444321
Q ss_pred HHHHHHHHHHhhhcCCCCEEEEecccCCccccccccCCCcEEEEcCCCchhhhhcCCCHHHHHHHHhcccc---CCceEE
Q psy15432 801 FKFLTVMSFYVFVKEKPDAVIMEVGIGGRYDNTNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIMK---PNCIAV 877 (1255)
Q Consensus 801 Fe~lT~mAf~~F~~~~vD~aVlEVG~GGr~D~TNvi~~P~VavITnIg~DHl~~LG~TleeIA~~KagI~K---~g~~av 877 (1255)
...+.|++|+|+|+.+ +..+.++ +|+++|||||+.||++++| |+|+|+.+|..|++ ++..+|
T Consensus 129 ------------~~~~~~~~V~E~ss~~-~~~~~~~-~p~iavitNi~~dHld~~~-s~e~~~~~k~~i~~~~~~~~~~v 193 (401)
T PRK03815 129 ------------LDKNAKIWVLETSSFT-LHYTNKA-KPNIYLLLPITPDHLSWHG-SFENYVKAKLKPLKRMNEGDVAI 193 (401)
T ss_pred ------------cCCCCCEEEEECChHH-hhCCccC-CCcEEEEcCCcccchhhcC-CHHHHHHHHHHHHhCCCcCCEEE
Confidence 1235699999998876 4556665 6999999999999999999 99999999999985 466788
Q ss_pred EccCCCChhHHHHHHHhhhcCCeEEEcCCccce----eccCCccccCCCchhHHHHHHHHHHHHHHHHHhhcchhhhhhH
Q psy15432 878 TSANQRGPCKQILLETSRALNCVLLEAPSILNY----RWRGQPLDEDWKSTVQSINISLAIQLAYLWMFRMNKSAELKSV 953 (1255)
Q Consensus 878 ~~~~qd~~~~~vl~~~A~~~~~~l~~~~~~~~~----~~~~~~v~l~L~G~hq~~Na~lAiala~~~l~~~~~~~~~~~~ 953 (1255)
++. |++... . .++++.++....+ .+... .+.+.+.| ..|+++|++++..
T Consensus 194 ~n~--dd~~~~-----~---~~~~~~fg~~~~~~~~~~~~~~--~~~~~~~~-~~NalaA~a~a~~-------------- 246 (401)
T PRK03815 194 LPK--KFKNTP-----T---KAQKIFYEDEEDLAEKFGIDSE--KINFKGPF-LLDALLALAVYKI-------------- 246 (401)
T ss_pred Eec--cccccc-----c---CCcEEEEecCCccccceeEehH--hcCCchHH-HHHHHHHHHHHHH--------------
Confidence 876 333211 0 1233333211111 11101 12344554 9999999998876
Q ss_pred HHHHhhhhhcCCCCCCCCCCCCCCcCCCCCCCCCccccCCCCCCCCcccccccccCCCCCCCCHHHHHHHhcCC-CCCcE
Q psy15432 954 IDKFLAEMRVSSPNETPGGQGHLSSCETPGGQGHLSFSETPGGQGHLTGNQSSLLMGPHFEIDPKTYRGIKACV-WPGRV 1032 (1255)
Q Consensus 954 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~i~~~i~~gL~~~~-~pGR~ 1032 (1255)
+|+ +.+.++|++|+ .|+||
T Consensus 247 -----------------------------------------------------------~G~-~~~~~~L~~f~~~~~R~ 266 (401)
T PRK03815 247 -----------------------------------------------------------LFD-ELDYERLNAFKIGKHKL 266 (401)
T ss_pred -----------------------------------------------------------hCc-HHHHHHHHhCCCCCceE
Confidence 222 33457899999 99999
Q ss_pred EEEee-cCcEEEEE-cCcCHHHHHHHHHHHHhhhccccCCCcccCCCCCcEEEEEecCC-CCChhhhhhhhhcCCCCcEE
Q psy15432 1033 QVIRK-NNFKYFLD-GAHTTDSIELCAKWFLRKSEAEANPTQSKSSNVIQRILVFNVTG-ERDPTKLLSPLLQSNQFEYI 1109 (1255)
Q Consensus 1033 E~v~~-~~~~vilD-gAHNP~S~~a~l~~l~~~~~~~~~~~~~~~~~~~~~vlVfg~~~-drD~~~ll~~L~~~~~~d~v 1109 (1255)
|++.. ++++||.| ++.||+|+..+++.+. + +++++|+|-.. +.+...+.+.+ .....+ +
T Consensus 267 e~~~~~~gv~~idDs~~tn~~a~~~al~~~~---------------~-~~ii~IlGG~~k~~~~~~l~~~~-~~~~~~-v 328 (401)
T PRK03815 267 EEFRDKQGRLWVDDSKATNVDATLQALKRYK---------------D-KKIHLILGGDDKGVDLTPLFEFM-KNLNIE-L 328 (401)
T ss_pred EEEEEECCEEEEECCCCCCHHHHHHHHHhCC---------------C-CCEEEEECCCCCCCCHHHHHHHH-HhhCcE-E
Confidence 99975 57777777 5999998888777541 1 35789998322 33555666666 333333 6
Q ss_pred EEcCCCCcccccccCCCCCcccccccccccCCHHHHHHHHHHHcCC-CceEEeecCCCCCCccccc
Q psy15432 1110 LVTPNILTNEIRWRGQPLDEDWKSTVQSINISLAIQLAYLWMFRMN-KSAELKRNQSSLPMGPHFE 1174 (1255)
Q Consensus 1110 i~t~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~ 1174 (1255)
++.+............ . +....+..+.++.+..+.....+ +.+.|..++.|++|-+-|+
T Consensus 329 ~~~G~~~~~~~~~~~~-~-----~~~~~~~~~~e~av~~~~~~~~~gdvVLlSPa~aSfd~f~ny~ 388 (401)
T PRK03815 329 YAIGSNTEKIQALAKE-F-----NIKAFVCEFLEKAVEEIKKVLKQNEVALLSPAAASLDQFKSYK 388 (401)
T ss_pred EEECCCHHHHHHHHhc-C-----CCeEEEeCCHHHHHHHHHHhCCCCCEEEeChhhhccccccCHH
Confidence 6665433211111000 0 00112334678877777665444 5677778899999985554
|
|
| >PRK14016 cyanophycin synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.4e-21 Score=246.35 Aligned_cols=133 Identities=24% Similarity=0.348 Sum_probs=107.3
Q ss_pred ccceEEEecCCCCCccHHHHHHHHHHHCCCCeEEEcCcccccccceeeeCCeecChhhhhhHHHHHHHHHHHHhhcCCCC
Q psy15432 718 KKLNVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTKYFWTVYNALHAKRKHAEDM 797 (1255)
Q Consensus 718 ~~l~vIhVTGTnGKgST~aml~sILr~~G~rtGl~tSPhL~~~~ERI~InG~pIs~~~f~~~~~~v~~~l~~~~~~~~~~ 797 (1255)
.++|+|+||||||||||++|+++||+.+|+++|+.+|.+ +.+|+..+.....+...
T Consensus 478 ~ripiIaVTGTnGKTTTt~lla~iL~~~G~~vg~~~t~G-------~~i~~~~i~~gd~t~p~----------------- 533 (727)
T PRK14016 478 GRIPIVAVTGTNGKTTTTRLIAHILKLSGKRVGMTTTDG-------VYIDGRLIDKGDCTGPK----------------- 533 (727)
T ss_pred CceeEEEEECCCCchHHHHHHHHHHHHcCCeEEEECCCC-------EEECCEEeccccccCHH-----------------
Confidence 467999999999999999999999999999999999987 66777766543322111
Q ss_pred CcHHHHHHHHHHHhhhcCCCCEEEEecccCCccccccccCCCcEEEEcCCCchhhhhcC-CCHHHHHHHHhccc---cCC
Q psy15432 798 PAYFKFLTVMSFYVFVKEKPDAVIMEVGIGGRYDNTNIIPNTAVVGITSLGYDHTAVLG-NTIEEITMQKAGIM---KPN 873 (1255)
Q Consensus 798 pt~Fe~lT~mAf~~F~~~~vD~aVlEVG~GGr~D~TNvi~~P~VavITnIg~DHl~~LG-~TleeIA~~KagI~---K~g 873 (1255)
. +..++.+..+|++|+|+|.+|.+.....+.+|+++|||||+.||++.+| +|+|+|+..|+.|+ +++
T Consensus 534 --s-------~~~ll~~~~~d~aVlE~s~~~il~~gl~~~~pdvaVvTNI~~DHL~~~~~~t~E~~~~~K~~i~~~v~~~ 604 (727)
T PRK14016 534 --S-------ARRVLMNPDVEAAVLETARGGILREGLAYDRCDVGVVTNIGEDHLGLGGINTLEDLAKVKRVVVEAVKPD 604 (727)
T ss_pred --H-------HHHHhcCCCCCEEEEEcCCCchhhcCCcccccCeEEEcCCCHHHhhccCCCCHHHHHHHHHHHHhhhCCC
Confidence 0 0112366789999999999998765555558999999999999999886 69999999999998 467
Q ss_pred ceEEEccCCCC
Q psy15432 874 CIAVTSANQRG 884 (1255)
Q Consensus 874 ~~av~~~~qd~ 884 (1255)
+.+|++. +|+
T Consensus 605 g~aVlNa-DD~ 614 (727)
T PRK14016 605 GYAVLNA-DDP 614 (727)
T ss_pred CeEEEcC-CCH
Confidence 7889987 443
|
|
| >PRK14016 cyanophycin synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.3e-21 Score=244.32 Aligned_cols=200 Identities=20% Similarity=0.248 Sum_probs=138.8
Q ss_pred HHHHHHhcCCccCCCCccEEEEcCCCChhHHHHHHHHHHHHCCCCeEEEcCCcccccceeEEeCCeecChhhhhhHHHHH
Q psy15432 92 VQYLGHLNITLDDIKKLNVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTKYFWTV 171 (1255)
Q Consensus 92 ~~~L~~Lg~~~~~~~~l~vIhVtGTnGKgST~a~l~sIL~~~G~k~Gl~tSPhL~~~rERI~InG~~is~~~ft~~~~~v 171 (1255)
..++..|-... ...++++|+||||||||||++|+++||+.+|+++|+.+|.. +.+|+..+...+.+.+.
T Consensus 465 ~~Iid~L~~~~-~~~ripiIaVTGTnGKTTTt~lla~iL~~~G~~vg~~~t~G-------~~i~~~~i~~gd~t~p~--- 533 (727)
T PRK14016 465 EAIVDMLFPEG-DDGRIPIVAVTGTNGKTTTTRLIAHILKLSGKRVGMTTTDG-------VYIDGRLIDKGDCTGPK--- 533 (727)
T ss_pred HHHHHHhcccC-CCCceeEEEEECCCCchHHHHHHHHHHHHcCCeEEEECCCC-------EEECCEEeccccccCHH---
Confidence 45555554322 12478999999999999999999999999999999999987 77888887655444331
Q ss_pred HHHHHhhhhccCCcchHHHHHHHHhhhhhhccCCCEEEEeeccCCccccccccCCccEEEEcCCCcchhhhcC-CCHHHH
Q psy15432 172 YNALHAKRKHAEDMPAYFKFLTVMSFYVFVKEKPDAVIMEVGIGGRYDNTNIIPNTAVVGITSLGYDHTAVLG-NTIEEI 250 (1255)
Q Consensus 172 ~~~l~~~~~~~~~~p~~Fe~Lt~~A~~~F~~~~vD~aVlEvG~GGr~D~tnii~~P~v~vITnIg~DHld~lG-~Tle~I 250 (1255)
+ +..++.+..+|++|+|+|.+|.+...--+.+|+++|||||+.||++++| +|+|+|
T Consensus 534 ---------------s--------~~~ll~~~~~d~aVlE~s~~~il~~gl~~~~pdvaVvTNI~~DHL~~~~~~t~E~~ 590 (727)
T PRK14016 534 ---------------S--------ARRVLMNPDVEAAVLETARGGILREGLAYDRCDVGVVTNIGEDHLGLGGINTLEDL 590 (727)
T ss_pred ---------------H--------HHHHhcCCCCCEEEEEcCCCchhhcCCcccccCeEEEcCCCHHHhhccCCCCHHHH
Confidence 0 0012356789999999999998765555558999999999999999886 699999
Q ss_pred HHHHHcccC---CCceeeeccCCCchHHHHHHHhhhccCceEEEcCCcc-------------eee------e-cCc----
Q psy15432 251 TMQKAGIMK---PNCIAVTSANQRGPCKQILLETSRALNCVLLEAPSIL-------------NYR------W-RGQ---- 303 (1255)
Q Consensus 251 a~~KagI~k---~g~~~v~~~~q~~e~~~vl~~~a~~~~~~l~~~~~~~-------------~~~------~-~~~---- 303 (1255)
+..|+.|++ ++..+|++. +|+.. ..+...+.. .+..|..+... .+. + .+.
T Consensus 591 ~~~K~~i~~~v~~~g~aVlNa-DD~~~-~~~~~~~~~-~vi~fs~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~~ 667 (727)
T PRK14016 591 AKVKRVVVEAVKPDGYAVLNA-DDPMV-AAMAERCKG-KVIFFSMDPDNPVIAEHRAQGGRAVYVEGDYIVLAEGGWEIR 667 (727)
T ss_pred HHHHHHHHhhhCCCCeEEEcC-CCHHH-HHHHHhCCC-cEEEEeCCCCChHHHHHHHhCCceEEEeCCEEEEEeCCccee
Confidence 999999984 556678876 44433 333333321 12223222100 000 0 110
Q ss_pred -----ccccCCCc--hhHHhhHHHHHHHHHHH
Q psy15432 304 -----PLDEDWKS--TVQSINISLAIQLAYLW 328 (1255)
Q Consensus 304 -----~i~l~l~G--~~q~~Na~lAia~a~~~ 328 (1255)
.+.+.+.| .||+.|+++|+++|..+
T Consensus 668 ~~~~~~i~l~~~G~~~hnv~NalAAiAaa~~l 699 (727)
T PRK14016 668 IISLADIPLTLGGKAGFNIENALAAIAAAWAL 699 (727)
T ss_pred eccccccceecCCcchhhHHHHHHHHHHHHHc
Confidence 23343365 79999999999988765
|
|
| >PRK03815 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=9.1e-21 Score=224.45 Aligned_cols=233 Identities=17% Similarity=0.192 Sum_probs=153.7
Q ss_pred cEEEEcCCCChhHHHHHHHHHHHHCCCCeEEEcCCcccccceeEEeCCeecChhhhhhHHHHHHHHHHhhhhccCCcchH
Q psy15432 109 NVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTKYFWTVYNALHAKRKHAEDMPAY 188 (1255)
Q Consensus 109 ~vIhVtGTnGKgST~a~l~sIL~~~G~k~Gl~tSPhL~~~rERI~InG~~is~~~ft~~~~~v~~~l~~~~~~~~~~p~~ 188 (1255)
++|+||||||||||++|+.+||+++|..+|-. | |.|+.
T Consensus 90 ~~i~ITGT~GKTTTt~ml~~iL~~~g~~~~gn-----------i---G~p~~---------------------------- 127 (401)
T PRK03815 90 FSIWISGTNGKTTTTQMTTHLLEDFGAVSGGN-----------I---GTPLA---------------------------- 127 (401)
T ss_pred CEEEEECCCcHHHHHHHHHHHHHHCCCcEEEE-----------e---cHhHH----------------------------
Confidence 49999999999999999999999998433211 1 22211
Q ss_pred HHHHHHHhhhhhhccCCCEEEEeeccCCccccccccCCccEEEEcCCCcchhhhcCCCHHHHHHHHHcccCC---Cceee
Q psy15432 189 FKFLTVMSFYVFVKEKPDAVIMEVGIGGRYDNTNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIMKP---NCIAV 265 (1255)
Q Consensus 189 Fe~Lt~~A~~~F~~~~vD~aVlEvG~GGr~D~tnii~~P~v~vITnIg~DHld~lG~Tle~Ia~~KagI~k~---g~~~v 265 (1255)
. ...+.|++|+|+|+.+ ++.+.++ +|+++|||||+.||+|++| |+++|+.+|..|++. +..+|
T Consensus 128 -----~------~~~~~~~~V~E~ss~~-~~~~~~~-~p~iavitNi~~dHld~~~-s~e~~~~~k~~i~~~~~~~~~~v 193 (401)
T PRK03815 128 -----E------LDKNAKIWVLETSSFT-LHYTNKA-KPNIYLLLPITPDHLSWHG-SFENYVKAKLKPLKRMNEGDVAI 193 (401)
T ss_pred -----h------cCCCCCEEEEECChHH-hhCCccC-CCcEEEEcCCcccchhhcC-CHHHHHHHHHHHHhCCCcCCEEE
Confidence 0 1235699999998876 3455665 6999999999999999999 999999999999853 45567
Q ss_pred eccCCCchHHHHHHHhhhccCceEEEcCCc-c-eeeecCcccccCCCchhHHhhHHHHHHHHHHHHHhhccchhhhhHHH
Q psy15432 266 TSANQRGPCKQILLETSRALNCVLLEAPSI-L-NYRWRGQPLDEDWKSTVQSINISLAIQLAYLWMFRMNKSAELKSVID 343 (1255)
Q Consensus 266 ~~~~q~~e~~~vl~~~a~~~~~~l~~~~~~-~-~~~~~~~~i~l~l~G~~q~~Na~lAia~a~~~l~~~~~~~~~~~~~~ 343 (1255)
++. +++ .. .. ......+..... . .+.+... .+.+.+.| ..|+++|++++..+
T Consensus 194 ~n~-dd~-~~---~~---~~~~~~fg~~~~~~~~~~~~~~--~~~~~~~~-~~NalaA~a~a~~~--------------- 247 (401)
T PRK03815 194 LPK-KFK-NT---PT---KAQKIFYEDEEDLAEKFGIDSE--KINFKGPF-LLDALLALAVYKIL--------------- 247 (401)
T ss_pred Eec-ccc-cc---cc---CCcEEEEecCCccccceeEehH--hcCCchHH-HHHHHHHHHHHHHh---------------
Confidence 665 333 21 11 111111221110 0 1111111 13345654 99999999988765
Q ss_pred HhhhhhccCCCCCCCCCCCCCCccCCCCCCCCccccCCCCCCCCccccccccCCCCCCCChHHHHHHHhcCC-CCCceEE
Q psy15432 344 KFLAEMRVSSPNETPGGQGHLSSCETPGGQGHLSFSETPGGQGHLTGNQSSLLMGPHFEIDPKTYRGIKACV-WPGRVQV 422 (1255)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~e~i~~gL~~~~-~pGR~e~ 422 (1255)
|+ +.+.++|++|+ .|+|||+
T Consensus 248 --------------------------------------------------------G~---~~~~~~L~~f~~~~~R~e~ 268 (401)
T PRK03815 248 --------------------------------------------------------FD---ELDYERLNAFKIGKHKLEE 268 (401)
T ss_pred --------------------------------------------------------Cc---HHHHHHHHhCCCCCceEEE
Confidence 21 23456899999 9999999
Q ss_pred EEe-cCcEEEEc-cCCCHHHHHHHHHHHHhhhhcccccCccCCCCCCCCCccCCCCCccEEEEEecCC-CCChhhhhHHh
Q psy15432 423 IRK-NNFKYFLD-GAHTTDSIELCAKWFLRKSEAEASSSRSVSSCPLDPTQSKSSNVIQRILVFNVTG-ERDPTKLLSPL 499 (1255)
Q Consensus 423 v~~-~~~~vilD-gAHnp~si~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilVfg~~~-drD~~~ll~~L 499 (1255)
+.. +++.||.| ++.||+|+..+++.+ .. +++++|+|-.. ..++.++.+.+
T Consensus 269 ~~~~~gv~~idDs~~tn~~a~~~al~~~----~~-----------------------~~ii~IlGG~~k~~~~~~l~~~~ 321 (401)
T PRK03815 269 FRDKQGRLWVDDSKATNVDATLQALKRY----KD-----------------------KKIHLILGGDDKGVDLTPLFEFM 321 (401)
T ss_pred EEEECCEEEEECCCCCCHHHHHHHHHhC----CC-----------------------CCEEEEECCCCCCCCHHHHHHHH
Confidence 975 67788888 488898777776643 11 16799999422 33666777766
Q ss_pred hccCCCcEEEEc
Q psy15432 500 LQSNQFEYILVT 511 (1255)
Q Consensus 500 ~~~~~~d~vi~t 511 (1255)
.....+ |++.
T Consensus 322 -~~~~~~-v~~~ 331 (401)
T PRK03815 322 -KNLNIE-LYAI 331 (401)
T ss_pred -HhhCcE-EEEE
Confidence 333333 5553
|
|
| >PF08245 Mur_ligase_M: Mur ligase middle domain; InterPro: IPR013221 The bacterial cell wall provides strength and rigidity to counteract internal osmotic pressure, and protection against the environment | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.8e-21 Score=203.32 Aligned_cols=165 Identities=24% Similarity=0.301 Sum_probs=111.8
Q ss_pred EcCCCChhHHHHHHHHHHHHCCCCeEEEcCCcccccceeEEeCCeecChhhhhhHHHHHHHHHHhhhhccCCcchHHHHH
Q psy15432 113 ISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTKYFWTVYNALHAKRKHAEDMPAYFKFL 192 (1255)
Q Consensus 113 VtGTnGKgST~a~l~sIL~~~G~k~Gl~tSPhL~~~rERI~InG~~is~~~ft~~~~~v~~~l~~~~~~~~~~p~~Fe~L 192 (1255)
||||||||||++|+.+||+++|++++.+++-. ..+ ....++
T Consensus 1 ITGT~GKTTTt~ml~~iL~~~g~~~~~~~~~~-----------------~~~----------------------~~~~~~ 41 (188)
T PF08245_consen 1 ITGTNGKTTTTRMLAHILSAAGKVVGTIGNTN-----------------NQI----------------------GLPLLL 41 (188)
T ss_dssp EESSSSHHHHHHHHHHHHHHTTEEEEEESSCH-----------------HHH----------------------HHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhcCCccccccccc-----------------chH----------------------HHHHHH
Confidence 89999999999999999999999998887410 000 111111
Q ss_pred HHHhhhhhhccCCCEEEEeeccCCccc-cccccCCccEEEEcCCCcchhhhcCCCHHHHHHHHHcccC---CCceeeecc
Q psy15432 193 TVMSFYVFVKEKPDAVIMEVGIGGRYD-NTNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIMK---PNCIAVTSA 268 (1255)
Q Consensus 193 t~~A~~~F~~~~vD~aVlEvG~GGr~D-~tnii~~P~v~vITnIg~DHld~lG~Tle~Ia~~KagI~k---~g~~~v~~~ 268 (1255)
. ...+.++|++|+|+|+++..+ ....+.+|+++|||||+.||+++++ |+++|+.+|+.+++ ++..+|++.
T Consensus 42 ~-----~~~~~~~~~~V~E~~~~~~~~~~l~~~~~p~i~viTni~~dH~~~~~-s~~~~~~~k~~~~~~~~~~~~~v~n~ 115 (188)
T PF08245_consen 42 L-----NAREGGADIAVLEVSEGGLGDERLSFLLKPDIAVITNIGPDHLDRFG-SIEEYAEAKAKIFRGLKPGGVAVLNA 115 (188)
T ss_dssp H-----HHHHTTSSEEEEEESSSCCCTSTTSGGSBESEEEE----SSSHCCTS-SHHHHHHHHHGGHTTTSTTSEEEEET
T ss_pred h-----hhcccccceeeeeccCCccccceeeeeeehheeeeceecccccccCC-CHHHHHHHHHhhhhhcccceEEEecC
Confidence 1 124579999999999993332 2222237999999999999999997 99999999999997 456788877
Q ss_pred CCCchHHHHHHHhhhccCceEEEcCCcceee-----------------ec--CcccccCCCchhHHhhHHHHHHHH
Q psy15432 269 NQRGPCKQILLETSRALNCVLLEAPSILNYR-----------------WR--GQPLDEDWKSTVQSINISLAIQLA 325 (1255)
Q Consensus 269 ~q~~e~~~vl~~~a~~~~~~l~~~~~~~~~~-----------------~~--~~~i~l~l~G~~q~~Na~lAia~a 325 (1255)
+++.....+..... .+..|..+...++. .. ..++.++++|.||++|+++|+++|
T Consensus 116 -dd~~~~~~~~~~~~--~v~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~~~l~G~hn~~NalaA~a~a 188 (188)
T PF08245_consen 116 -DDPELAEIAANSKC--KVITFGLDNSADIRASNISYSEEGGRFRIISYNGEEFEIELPLPGKHNVENALAAIAAA 188 (188)
T ss_dssp -TSHHHHHHHHHHTT--TEEEEESSSSSEEEEEEEEEETTEEEEEEEEETTEEEEEEESSSSHHHHHHHHHHHHHH
T ss_pred -CCHHHHHHHHhcCC--cEEEeccCcccceeeeeEEEecCCcEEEEEEecCceEEEEecCCCHHHHHHHHHHHHhC
Confidence 55544444443221 13334433322111 11 125789999999999999999976
|
The peptidoglycan layer gives the cell wall its strength, and helps maintain the overall shape of the cell. The basic peptidoglycan structure of both Gram-positive and Gram-negative bacteria is comprised of a sheet of glycan chains connected by short cross-linking polypeptides. Biosynthesis of peptidoglycan is a multi-step (11-12 steps) process comprising three main stages: (1) formation of UDP-N-acetylmuramic acid (UDPMurNAc) from N-acetylglucosamine (GlcNAc). (2) addition of a short polypeptide chain to the UDPMurNAc. (3) addition of a second GlcNAc to the disaccharide-pentapeptide building block and transport of this unit through the cytoplasmic membrane and incorporation into the growing peptidoglycan layer. Stage two involves four key Mur ligase enzymes: MurC (6.3.2.8 from EC) [], MurD (6.3.2.9 from EC) [], MurE (6.3.2.13 from EC) [] and MurF (6.3.2.10 from EC) []. These four Mur ligases are responsible for the successive additions of L-alanine, D-glutamate, meso-diaminopimelate or L-lysine, and D-alanyl-D-alanine to UDP-N-acetylmuramic acid. All four Mur ligases are topologically similar to one another, even though they display low sequence identity. They are each composed of three domains: an N-terminal Rossmann-fold domain responsible for binding the UDPMurNAc substrate; a central domain (similar to ATP-binding domains of several ATPases and GTPases); and a C-terminal domain (similar to dihydrofolate reductase fold) that appears to be associated with binding the incoming amino acid. The conserved sequence motifs found in the four Mur enzymes also map to other members of the Mur ligase family, including folylpolyglutamate synthetase, cyanophycin synthetase and the capB enzyme from Bacillales []. This entry represents the C-terminal domain from all four stage 2 Mur enzymes: UDP-N-acetylmuramate-L-alanine ligase (MurC), UDP-N-acetylmuramoylalanine-D-glutamate ligase (MurD), UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase (MurE), and UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase (MurF). This entry also includes folylpolyglutamate synthase that transfers glutamate to folylpolyglutamate and cyanophycin synthetase that catalyses the biosynthesis of the cyanobacterial reserve material multi-L-arginyl-poly-L-aspartate (cyanophycin) [].; GO: 0005524 ATP binding, 0009058 biosynthetic process; PDB: 3LK7_A 2XJA_A 2WTZ_A 2GCA_A 1JBW_A 1JBV_A 2GC5_A 1FGS_A 2GCB_A 2GC6_A .... |
| >PF08245 Mur_ligase_M: Mur ligase middle domain; InterPro: IPR013221 The bacterial cell wall provides strength and rigidity to counteract internal osmotic pressure, and protection against the environment | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.6e-21 Score=204.26 Aligned_cols=163 Identities=25% Similarity=0.316 Sum_probs=109.7
Q ss_pred ecCCCCCccHHHHHHHHHHHCCCCeEEEcCcccccccceeeeCCeecChhhhhhHHHHHHHHHHHHhhcCCCCCcHHHHH
Q psy15432 725 ISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTKYFWTVYNALHAKRKHAEDMPAYFKFL 804 (1255)
Q Consensus 725 VTGTnGKgST~aml~sILr~~G~rtGl~tSPhL~~~~ERI~InG~pIs~~~f~~~~~~v~~~l~~~~~~~~~~pt~Fe~l 804 (1255)
||||||||||++|+.+||+++|++++.+++- ++.+ -
T Consensus 1 ITGT~GKTTTt~ml~~iL~~~g~~~~~~~~~-----~~~~---------------------------------------~ 36 (188)
T PF08245_consen 1 ITGTNGKTTTTRMLAHILSAAGKVVGTIGNT-----NNQI---------------------------------------G 36 (188)
T ss_dssp EESSSSHHHHHHHHHHHHHHTTEEEEEESSC-----HHHH---------------------------------------H
T ss_pred CCCCCCHHHHHHHHHHHHHhcCCcccccccc-----cchH---------------------------------------H
Confidence 8999999999999999999999988887641 0000 0
Q ss_pred HHHHHHhhhcCCCCEEEEecccCCccc-cccccCCCcEEEEcCCCchhhhhcCCCHHHHHHHHhcccc---CCceEEEcc
Q psy15432 805 TVMSFYVFVKEKPDAVIMEVGIGGRYD-NTNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIMK---PNCIAVTSA 880 (1255)
Q Consensus 805 T~mAf~~F~~~~vD~aVlEVG~GGr~D-~TNvi~~P~VavITnIg~DHl~~LG~TleeIA~~KagI~K---~g~~av~~~ 880 (1255)
....+....+.++|++|+|+|+++..+ ....+.+|+++|||||+.||++++| |+++|+.+|+.|++ +++.+|++.
T Consensus 37 ~~~~~~~~~~~~~~~~V~E~~~~~~~~~~l~~~~~p~i~viTni~~dH~~~~~-s~~~~~~~k~~~~~~~~~~~~~v~n~ 115 (188)
T PF08245_consen 37 LPLLLLNAREGGADIAVLEVSEGGLGDERLSFLLKPDIAVITNIGPDHLDRFG-SIEEYAEAKAKIFRGLKPGGVAVLNA 115 (188)
T ss_dssp HHHHHHHHHHTTSSEEEEEESSSCCCTSTTSGGSBESEEEE----SSSHCCTS-SHHHHHHHHHGGHTTTSTTSEEEEET
T ss_pred HHHHHhhhcccccceeeeeccCCccccceeeeeeehheeeeceecccccccCC-CHHHHHHHHHhhhhhcccceEEEecC
Confidence 011112224568999999999993332 2222137999999999999999997 99999999999997 677899987
Q ss_pred CCCChhHHHHHHHhhhcCCeEEEcCC--cc--------------cee---cc--CCccccCCCchhHHHHHHHHHHHH
Q psy15432 881 NQRGPCKQILLETSRALNCVLLEAPS--IL--------------NYR---WR--GQPLDEDWKSTVQSINISLAIQLA 937 (1255)
Q Consensus 881 ~qd~~~~~vl~~~A~~~~~~l~~~~~--~~--------------~~~---~~--~~~v~l~L~G~hq~~Na~lAiala 937 (1255)
+++.....+.. .+++++.++. .. .+. .. ..++.++++|.||++|+++|+++|
T Consensus 116 -dd~~~~~~~~~----~~~~v~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~~~l~G~hn~~NalaA~a~a 188 (188)
T PF08245_consen 116 -DDPELAEIAAN----SKCKVITFGLDNSADIRASNISYSEEGGRFRIISYNGEEFEIELPLPGKHNVENALAAIAAA 188 (188)
T ss_dssp -TSHHHHHHHHH----HTTTEEEEESSSSSEEEEEEEEEETTEEEEEEEEETTEEEEEEESSSSHHHHHHHHHHHHHH
T ss_pred -CCHHHHHHHHh----cCCcEEEeccCcccceeeeeEEEecCCcEEEEEEecCceEEEEecCCCHHHHHHHHHHHHhC
Confidence 44433333332 2233333321 11 010 11 124778999999999999999986
|
The peptidoglycan layer gives the cell wall its strength, and helps maintain the overall shape of the cell. The basic peptidoglycan structure of both Gram-positive and Gram-negative bacteria is comprised of a sheet of glycan chains connected by short cross-linking polypeptides. Biosynthesis of peptidoglycan is a multi-step (11-12 steps) process comprising three main stages: (1) formation of UDP-N-acetylmuramic acid (UDPMurNAc) from N-acetylglucosamine (GlcNAc). (2) addition of a short polypeptide chain to the UDPMurNAc. (3) addition of a second GlcNAc to the disaccharide-pentapeptide building block and transport of this unit through the cytoplasmic membrane and incorporation into the growing peptidoglycan layer. Stage two involves four key Mur ligase enzymes: MurC (6.3.2.8 from EC) [], MurD (6.3.2.9 from EC) [], MurE (6.3.2.13 from EC) [] and MurF (6.3.2.10 from EC) []. These four Mur ligases are responsible for the successive additions of L-alanine, D-glutamate, meso-diaminopimelate or L-lysine, and D-alanyl-D-alanine to UDP-N-acetylmuramic acid. All four Mur ligases are topologically similar to one another, even though they display low sequence identity. They are each composed of three domains: an N-terminal Rossmann-fold domain responsible for binding the UDPMurNAc substrate; a central domain (similar to ATP-binding domains of several ATPases and GTPases); and a C-terminal domain (similar to dihydrofolate reductase fold) that appears to be associated with binding the incoming amino acid. The conserved sequence motifs found in the four Mur enzymes also map to other members of the Mur ligase family, including folylpolyglutamate synthetase, cyanophycin synthetase and the capB enzyme from Bacillales []. This entry represents the C-terminal domain from all four stage 2 Mur enzymes: UDP-N-acetylmuramate-L-alanine ligase (MurC), UDP-N-acetylmuramoylalanine-D-glutamate ligase (MurD), UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase (MurE), and UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase (MurF). This entry also includes folylpolyglutamate synthase that transfers glutamate to folylpolyglutamate and cyanophycin synthetase that catalyses the biosynthesis of the cyanobacterial reserve material multi-L-arginyl-poly-L-aspartate (cyanophycin) [].; GO: 0005524 ATP binding, 0009058 biosynthetic process; PDB: 3LK7_A 2XJA_A 2WTZ_A 2GCA_A 1JBW_A 1JBV_A 2GC5_A 1FGS_A 2GCB_A 2GC6_A .... |
| >PF02875 Mur_ligase_C: Mur ligase family, glutamate ligase domain This Prosite entry is a subset of the Pfam family | Back alignment and domain information |
|---|
Probab=99.32 E-value=2.8e-12 Score=121.38 Aligned_cols=81 Identities=25% Similarity=0.331 Sum_probs=64.6
Q ss_pred CCCceEEEEe-cCcEEEEccCCCHHHHHHHHHHHHhhhhcccccCccCCCCCCCCCccCCCCCccEEEEEecCCC---CC
Q psy15432 416 WPGRVQVIRK-NNFKYFLDGAHTTDSIELCAKWFLRKSEAEASSSRSVSSCPLDPTQSKSSNVIQRILVFNVTGE---RD 491 (1255)
Q Consensus 416 ~pGR~e~v~~-~~~~vilDgAHnp~si~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilVfg~~~d---rD 491 (1255)
||||||++.. +++.||+||||||+|++++++++++....+ ++++|||++++ |+
T Consensus 1 vpgR~e~v~~~~~~~vi~D~ahNp~s~~a~l~~l~~~~~~~-----------------------~~i~V~G~~~d~g~~~ 57 (91)
T PF02875_consen 1 VPGRMEVVREPNGPTVIDDYAHNPDSIRALLEALKELYPKG-----------------------RIIAVFGAMGDLGSKD 57 (91)
T ss_dssp ETTSSEEEEEETTEEEEEET--SHHHHHHHHHHHHHHCTTS-----------------------EEEEEEEEBTT-HTSH
T ss_pred CCCCcEEEeeCCCcEEEEECCCCHHHHHHHHHHHHHhccCC-----------------------cEEEEEcccccccccc
Confidence 8999999997 678999999999999999999999875432 89999999888 76
Q ss_pred hh--hhhHHhhccCCCcEEEEcCCCCCCCCC
Q psy15432 492 PT--KLLSPLLQSNQFEYILVTPNILTNESS 520 (1255)
Q Consensus 492 ~~--~ll~~L~~~~~~d~vi~t~~~~~~~~~ 520 (1255)
.. .++..+ .....|.+|+|+++++.+++
T Consensus 58 ~~~~~~~~~~-~~~~~d~vi~~~~~~r~~~~ 87 (91)
T PF02875_consen 58 KDFHEEIGEL-AAQLADVVILTGDNPRAEDP 87 (91)
T ss_dssp HHCHHHHHHH-HTTCSSEEEEETSBTTTS-H
T ss_pred HHHHHHHHHH-HHhcCCEEEEcCCCCCCCcc
Confidence 55 444444 35568889999999998875
|
; InterPro: IPR004101 The bacterial cell wall provides strength and rigidity to counteract internal osmotic pressure, and protection against the environment. The peptidoglycan layer gives the cell wall its strength, and helps maintain the overall shape of the cell. The basic peptidoglycan structure of both Gram-positive and Gram-negative bacteria is comprised of a sheet of glycan chains connected by short cross-linking polypeptides. Biosynthesis of peptidoglycan is a multi-step (11-12 steps) process comprising three main stages: (1) formation of UDP-N-acetylmuramic acid (UDPMurNAc) from N-acetylglucosamine (GlcNAc). (2) addition of a short polypeptide chain to the UDPMurNAc. (3) addition of a second GlcNAc to the disaccharide-pentapeptide building block and transport of this unit through the cytoplasmic membrane and incorporation into the growing peptidoglycan layer. Stage two involves four key Mur ligase enzymes: MurC (6.3.2.8 from EC) [], MurD (6.3.2.9 from EC) [], MurE (6.3.2.13 from EC) [] and MurF (6.3.2.10 from EC) []. These four Mur ligases are responsible for the successive additions of L-alanine, D-glutamate, meso-diaminopimelate or L-lysine, and D-alanyl-D-alanine to UDP-N-acetylmuramic acid. All four Mur ligases are topologically similar to one another, even though they display low sequence identity. They are each composed of three domains: an N-terminal Rossmann-fold domain responsible for binding the UDPMurNAc substrate; a central domain (similar to ATP-binding domains of several ATPases and GTPases); and a C-terminal domain (similar to dihydrofolate reductase fold) that appears to be associated with binding the incoming amino acid. The conserved sequence motifs found in the four Mur enzymes also map to other members of the Mur ligase family, including folylpolyglutamate synthetase, cyanophycin synthetase and the capB enzyme from Bacillales []. This entry represents the C-terminal domain from all four stage 2 Mur enzymes: UDP-N-acetylmuramate-L-alanine ligase (MurC), UDP-N-acetylmuramoylalanine-D-glutamate ligase (MurD), UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase (MurE), and UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase (MurF). This entry also includes the C-terminal domain of folylpolyglutamate synthase that transfers glutamate to folylpolyglutamate and cyanophycin synthetase that catalyses the biosynthesis of the cyanobacterial reserve material multi-L-arginyl-poly-L-aspartate (cyanophycin) []. The C-terminal domain is almost always associated with the cytoplasmic peptidoglycan synthetases, N-terminal domain (see IPR000713 from INTERPRO).; GO: 0005524 ATP binding, 0016874 ligase activity, 0009058 biosynthetic process; PDB: 2Y68_A 3UAG_A 4UAG_A 2UAG_A 1E0D_A 2XPC_A 2WJP_A 2VTE_A 2Y67_A 1EEH_A .... |
| >PF02875 Mur_ligase_C: Mur ligase family, glutamate ligase domain This Prosite entry is a subset of the Pfam family | Back alignment and domain information |
|---|
Probab=99.22 E-value=2.4e-11 Score=115.07 Aligned_cols=80 Identities=25% Similarity=0.295 Sum_probs=62.5
Q ss_pred CCCcEEEEee-cCcEEEEEcCcCHHHHHHHHHHHHhhhccccCCCcccCCCCCcEEEEEecCCC---CChh--hhhhhhh
Q psy15432 1028 WPGRVQVIRK-NNFKYFLDGAHTTDSIELCAKWFLRKSEAEANPTQSKSSNVIQRILVFNVTGE---RDPT--KLLSPLL 1101 (1255)
Q Consensus 1028 ~pGR~E~v~~-~~~~vilDgAHNP~S~~a~l~~l~~~~~~~~~~~~~~~~~~~~~vlVfg~~~d---rD~~--~ll~~L~ 1101 (1255)
||||||++.. +++++|+||||||+|++++++++++... .+++++|||++++ |+.+ .++..+
T Consensus 1 vpgR~e~v~~~~~~~vi~D~ahNp~s~~a~l~~l~~~~~------------~~~~i~V~G~~~d~g~~~~~~~~~~~~~- 67 (91)
T PF02875_consen 1 VPGRMEVVREPNGPTVIDDYAHNPDSIRALLEALKELYP------------KGRIIAVFGAMGDLGSKDKDFHEEIGEL- 67 (91)
T ss_dssp ETTSSEEEEEETTEEEEEET--SHHHHHHHHHHHHHHCT------------TSEEEEEEEEBTT-HTSHHHCHHHHHHH-
T ss_pred CCCCcEEEeeCCCcEEEEECCCCHHHHHHHHHHHHHhcc------------CCcEEEEEccccccccccHHHHHHHHHH-
Confidence 8999999997 5789999999999999999999998642 2689999999888 7655 444455
Q ss_pred cCCCCcEEEEcCCCCcccc
Q psy15432 1102 QSNQFEYILVTPNILTNEI 1120 (1255)
Q Consensus 1102 ~~~~~d~vi~t~~~~~~~~ 1120 (1255)
.....|.++++++++..+.
T Consensus 68 ~~~~~d~vi~~~~~~r~~~ 86 (91)
T PF02875_consen 68 AAQLADVVILTGDNPRAED 86 (91)
T ss_dssp HTTCSSEEEEETSBTTTS-
T ss_pred HHhcCCEEEEcCCCCCCCc
Confidence 3555788999998877654
|
; InterPro: IPR004101 The bacterial cell wall provides strength and rigidity to counteract internal osmotic pressure, and protection against the environment. The peptidoglycan layer gives the cell wall its strength, and helps maintain the overall shape of the cell. The basic peptidoglycan structure of both Gram-positive and Gram-negative bacteria is comprised of a sheet of glycan chains connected by short cross-linking polypeptides. Biosynthesis of peptidoglycan is a multi-step (11-12 steps) process comprising three main stages: (1) formation of UDP-N-acetylmuramic acid (UDPMurNAc) from N-acetylglucosamine (GlcNAc). (2) addition of a short polypeptide chain to the UDPMurNAc. (3) addition of a second GlcNAc to the disaccharide-pentapeptide building block and transport of this unit through the cytoplasmic membrane and incorporation into the growing peptidoglycan layer. Stage two involves four key Mur ligase enzymes: MurC (6.3.2.8 from EC) [], MurD (6.3.2.9 from EC) [], MurE (6.3.2.13 from EC) [] and MurF (6.3.2.10 from EC) []. These four Mur ligases are responsible for the successive additions of L-alanine, D-glutamate, meso-diaminopimelate or L-lysine, and D-alanyl-D-alanine to UDP-N-acetylmuramic acid. All four Mur ligases are topologically similar to one another, even though they display low sequence identity. They are each composed of three domains: an N-terminal Rossmann-fold domain responsible for binding the UDPMurNAc substrate; a central domain (similar to ATP-binding domains of several ATPases and GTPases); and a C-terminal domain (similar to dihydrofolate reductase fold) that appears to be associated with binding the incoming amino acid. The conserved sequence motifs found in the four Mur enzymes also map to other members of the Mur ligase family, including folylpolyglutamate synthetase, cyanophycin synthetase and the capB enzyme from Bacillales []. This entry represents the C-terminal domain from all four stage 2 Mur enzymes: UDP-N-acetylmuramate-L-alanine ligase (MurC), UDP-N-acetylmuramoylalanine-D-glutamate ligase (MurD), UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase (MurE), and UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase (MurF). This entry also includes the C-terminal domain of folylpolyglutamate synthase that transfers glutamate to folylpolyglutamate and cyanophycin synthetase that catalyses the biosynthesis of the cyanobacterial reserve material multi-L-arginyl-poly-L-aspartate (cyanophycin) []. The C-terminal domain is almost always associated with the cytoplasmic peptidoglycan synthetases, N-terminal domain (see IPR000713 from INTERPRO).; GO: 0005524 ATP binding, 0016874 ligase activity, 0009058 biosynthetic process; PDB: 2Y68_A 3UAG_A 4UAG_A 2UAG_A 1E0D_A 2XPC_A 2WJP_A 2VTE_A 2Y67_A 1EEH_A .... |
| >COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.0041 Score=70.82 Aligned_cols=144 Identities=22% Similarity=0.281 Sum_probs=92.4
Q ss_pred eEEEecCC--CCCccHHHHHHHHHHHCCCCeEEE----cCccc--ccccceeeeCCeecChhhhhhHHHHHHHHHHHHhh
Q psy15432 721 NVIHISGT--KGKGSTCAYCESILRSHGFSTGFF----SSPHL--IEVRERIKLNGEPISYDKFTKYFWTVYNALHAKRK 792 (1255)
Q Consensus 721 ~vIhVTGT--nGKgST~aml~sILr~~G~rtGl~----tSPhL--~~~~ERI~InG~pIs~~~f~~~~~~v~~~l~~~~~ 792 (1255)
.+|+|||+ .||+|...-+-.-|+..|+|++.. +||.- .=+-+|||.+..-..+..|.+-. .
T Consensus 52 ~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiRs~----------~- 120 (323)
T COG1703 52 HVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIRSS----------P- 120 (323)
T ss_pred cEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHHhhccCCCeEEeec----------C-
Confidence 49999998 679999999999999999999997 55530 01234454444333333332211 0
Q ss_pred cCCCCCcHHHHHHHHHHHhhhcCCCCEEEEec-ccC-CccccccccCCCcEEEEcCCCchhhhhcCCCHHHHHHHHhccc
Q psy15432 793 HAEDMPAYFKFLTVMSFYVFVKEKPDAVIMEV-GIG-GRYDNTNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIM 870 (1255)
Q Consensus 793 ~~~~~pt~Fe~lT~mAf~~F~~~~vD~aVlEV-G~G-Gr~D~TNvi~~P~VavITnIg~DHl~~LG~TleeIA~~KagI~ 870 (1255)
..+...-..--|..+...+--.++|++|+|+ |.| ++.|-.+.. +..+++.+. -.|+ ++-..|+||+
T Consensus 121 -srG~lGGlS~at~~~i~~ldAaG~DvIIVETVGvGQsev~I~~~a---Dt~~~v~~p-----g~GD---~~Q~iK~Gim 188 (323)
T COG1703 121 -SRGTLGGLSRATREAIKLLDAAGYDVIIVETVGVGQSEVDIANMA---DTFLVVMIP-----GAGD---DLQGIKAGIM 188 (323)
T ss_pred -CCccchhhhHHHHHHHHHHHhcCCCEEEEEecCCCcchhHHhhhc---ceEEEEecC-----CCCc---HHHHHHhhhh
Confidence 1112223333444555556778999999997 898 899988886 444443332 3454 4556699999
Q ss_pred cCCceEEEccCCCChhH
Q psy15432 871 KPNCIAVTSANQRGPCK 887 (1255)
Q Consensus 871 K~g~~av~~~~qd~~~~ 887 (1255)
.=+..+++|.-+.+.+.
T Consensus 189 EiaDi~vINKaD~~~A~ 205 (323)
T COG1703 189 EIADIIVINKADRKGAE 205 (323)
T ss_pred hhhheeeEeccChhhHH
Confidence 99989999983333333
|
|
| >COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.0053 Score=70.00 Aligned_cols=156 Identities=21% Similarity=0.250 Sum_probs=98.4
Q ss_pred HHHHHHHHHhcCCccCCCCccEEEEcCC--CChhHHHHHHHHHHHHCCCCeEEE----cCCcc--cccceeEEeCCeecC
Q psy15432 89 DQVVQYLGHLNITLDDIKKLNVIHISGT--KGKGSTCAYCESILRSHGFSTGFF----SSPHL--IEVRERIKLNGEPIS 160 (1255)
Q Consensus 89 ~~~~~~L~~Lg~~~~~~~~l~vIhVtGT--nGKgST~a~l~sIL~~~G~k~Gl~----tSPhL--~~~rERI~InG~~is 160 (1255)
+-++.++.+-|++ .+|+|||+ -||+|..--+-.-|+..|+||+.. +||.- --..+|||.+..-..
T Consensus 39 ~ll~~l~p~tG~a-------~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~ 111 (323)
T COG1703 39 ELLRALYPRTGNA-------HVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVD 111 (323)
T ss_pred HHHHHHhhcCCCC-------cEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHHhhccC
Confidence 3455555555665 49999998 579999999999999999999987 55541 112455665554444
Q ss_pred hhhhhhHHHHHHHHHHhhhhccCCcchHHHHHHHHhhhhhhccCCCEEEEee-ccC-CccccccccCCccEEEEcCCCcc
Q psy15432 161 YDKFTKYFWTVYNALHAKRKHAEDMPAYFKFLTVMSFYVFVKEKPDAVIMEV-GIG-GRYDNTNIIPNTAVVGITSLGYD 238 (1255)
Q Consensus 161 ~~~ft~~~~~v~~~l~~~~~~~~~~p~~Fe~Lt~~A~~~F~~~~vD~aVlEv-G~G-Gr~D~tnii~~P~v~vITnIg~D 238 (1255)
+..|-++. +. .....-..--|..+..++--.++|++|+|+ |.| ++.|-.+.+ +..+++.+.
T Consensus 112 ~~vFiRs~----------~s--rG~lGGlS~at~~~i~~ldAaG~DvIIVETVGvGQsev~I~~~a---Dt~~~v~~p-- 174 (323)
T COG1703 112 PGVFIRSS----------PS--RGTLGGLSRATREAIKLLDAAGYDVIIVETVGVGQSEVDIANMA---DTFLVVMIP-- 174 (323)
T ss_pred CCeEEeec----------CC--CccchhhhHHHHHHHHHHHhcCCCEEEEEecCCCcchhHHhhhc---ceEEEEecC--
Confidence 44443331 11 111222222333444455778999999997 777 788888886 333333332
Q ss_pred hhhhcCCCHHHHHHHHHcccCCCceeeeccCCCchH
Q psy15432 239 HTAVLGNTIEEITMQKAGIMKPNCIAVTSANQRGPC 274 (1255)
Q Consensus 239 Hld~lG~Tle~Ia~~KagI~k~g~~~v~~~~q~~e~ 274 (1255)
| .-+++-..|+|+|.-+-.+|+|..+.+.+
T Consensus 175 -----g-~GD~~Q~iK~GimEiaDi~vINKaD~~~A 204 (323)
T COG1703 175 -----G-AGDDLQGIKAGIMEIADIIVINKADRKGA 204 (323)
T ss_pred -----C-CCcHHHHHHhhhhhhhheeeEeccChhhH
Confidence 2 33567778999999888888887333333
|
|
| >PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components | Back alignment and domain information |
|---|
Probab=95.09 E-value=0.09 Score=59.45 Aligned_cols=154 Identities=23% Similarity=0.265 Sum_probs=81.7
Q ss_pred HHHHHHHHHhcCcccccccceEEEecCC--CCCccHHHHHHHHHHHCCCCeEEE----cCccc--ccccceeeeCCeecC
Q psy15432 701 DQVVQYLGHLNITLDDIKKLNVIHISGT--KGKGSTCAYCESILRSHGFSTGFF----SSPHL--IEVRERIKLNGEPIS 772 (1255)
Q Consensus 701 ~~~~~~L~~Lg~~~~~~~~l~vIhVTGT--nGKgST~aml~sILr~~G~rtGl~----tSPhL--~~~~ERI~InG~pIs 772 (1255)
+...++|+++-... .+-.+|+|||+ .||+|...-+...|++.|.|+|+. +||.- .=+-.|||.+-..-.
T Consensus 13 ~~~~~ll~~l~~~~---g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d 89 (266)
T PF03308_consen 13 PEARELLKRLYPHT---GRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRD 89 (266)
T ss_dssp HHHHHHHHHHGGGT---T-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTS
T ss_pred HHHHHHHHHHHhhc---CCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCC
Confidence 35566676663221 34569999997 579999999999999999999997 45520 011233333211111
Q ss_pred hhhhhhHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHHhhhcCCCCEEEEec-ccC-CccccccccCCCcEEEEcCCCch
Q psy15432 773 YDKFTKYFWTVYNALHAKRKHAEDMPAYFKFLTVMSFYVFVKEKPDAVIMEV-GIG-GRYDNTNIIPNTAVVGITSLGYD 850 (1255)
Q Consensus 773 ~~~f~~~~~~v~~~l~~~~~~~~~~pt~Fe~lT~mAf~~F~~~~vD~aVlEV-G~G-Gr~D~TNvi~~P~VavITnIg~D 850 (1255)
+..|.+-.. ..+...-.---|.-+..++-..+.|++++|+ |.| .+.|..++.. ..+.+++.-
T Consensus 90 ~~vfIRS~a------------tRG~lGGls~~t~~~v~ll~aaG~D~IiiETVGvGQsE~~I~~~aD-~~v~v~~Pg--- 153 (266)
T PF03308_consen 90 PGVFIRSMA------------TRGSLGGLSRATRDAVRLLDAAGFDVIIIETVGVGQSEVDIADMAD-TVVLVLVPG--- 153 (266)
T ss_dssp TTEEEEEE---------------SSHHHHHHHHHHHHHHHHHTT-SEEEEEEESSSTHHHHHHTTSS-EEEEEEESS---
T ss_pred CCEEEeecC------------cCCCCCCccHhHHHHHHHHHHcCCCEEEEeCCCCCccHHHHHHhcC-eEEEEecCC---
Confidence 111111000 0111111111222233333667899999997 999 7888888873 333333332
Q ss_pred hhhhcCCCHHHHHHHHhccccCCceEEEcc
Q psy15432 851 HTAVLGNTIEEITMQKAGIMKPNCIAVTSA 880 (1255)
Q Consensus 851 Hl~~LG~TleeIA~~KagI~K~g~~av~~~ 880 (1255)
+|+.+. ..|+||+.-...+|+|.
T Consensus 154 ----~GD~iQ---~~KaGimEiaDi~vVNK 176 (266)
T PF03308_consen 154 ----LGDEIQ---AIKAGIMEIADIFVVNK 176 (266)
T ss_dssp ----TCCCCC---TB-TTHHHH-SEEEEE-
T ss_pred ----CccHHH---HHhhhhhhhccEEEEeC
Confidence 344333 45899998777888887
|
In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A. |
| >TIGR00750 lao LAO/AO transport system ATPase | Back alignment and domain information |
|---|
Probab=93.76 E-value=0.51 Score=54.79 Aligned_cols=48 Identities=21% Similarity=0.243 Sum_probs=37.7
Q ss_pred HHHHHHHhcCCccCCCCccEEEEcCCC--ChhHHHHHHHHHHHHCCCCeEEEc
Q psy15432 91 VVQYLGHLNITLDDIKKLNVIHISGTK--GKGSTCAYCESILRSHGFSTGFFS 141 (1255)
Q Consensus 91 ~~~~L~~Lg~~~~~~~~l~vIhVtGTn--GKgST~a~l~sIL~~~G~k~Gl~t 141 (1255)
.+.+|..+.... ...++|.|+|.+ ||||++..+...|...|++++++.
T Consensus 20 ~~~~~~~~~~~~---~~~~~i~i~G~~G~GKttl~~~l~~~~~~~~~~v~~i~ 69 (300)
T TIGR00750 20 AKQLLDRIMPYT---GNAHRVGITGTPGAGKSTLLEALGMELRRRGLKVAVIA 69 (300)
T ss_pred HHHHHHhCCccc---CCceEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 556677664332 456899999965 799999999999999999999865
|
Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however. |
| >PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components | Back alignment and domain information |
|---|
Probab=93.65 E-value=0.063 Score=60.65 Aligned_cols=150 Identities=23% Similarity=0.243 Sum_probs=80.6
Q ss_pred HHHHHHHHhcCCccCCCCccEEEEcCC--CChhHHHHHHHHHHHHCCCCeEEE----cCCcc--cccceeEEeCCeecCh
Q psy15432 90 QVVQYLGHLNITLDDIKKLNVIHISGT--KGKGSTCAYCESILRSHGFSTGFF----SSPHL--IEVRERIKLNGEPISY 161 (1255)
Q Consensus 90 ~~~~~L~~Lg~~~~~~~~l~vIhVtGT--nGKgST~a~l~sIL~~~G~k~Gl~----tSPhL--~~~rERI~InG~~is~ 161 (1255)
...++|.++-... .+-.+|+|||+ -||+|...-+...|++.|.++|.. +||.- --..+|||.+...-.+
T Consensus 14 ~~~~ll~~l~~~~---g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~ 90 (266)
T PF03308_consen 14 EARELLKRLYPHT---GRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDP 90 (266)
T ss_dssp HHHHHHHHHGGGT---T-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTST
T ss_pred HHHHHHHHHHhhc---CCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCC
Confidence 5566666664322 24469999997 579999999999999999999997 55531 0112333332111111
Q ss_pred hhhhhHHHHHHHHHHhhhhc---cCCcchHHHHHHHHhhhhhhccCCCEEEEee-ccC-CccccccccCCccEEEEcCCC
Q psy15432 162 DKFTKYFWTVYNALHAKRKH---AEDMPAYFKFLTVMSFYVFVKEKPDAVIMEV-GIG-GRYDNTNIIPNTAVVGITSLG 236 (1255)
Q Consensus 162 ~~ft~~~~~v~~~l~~~~~~---~~~~p~~Fe~Lt~~A~~~F~~~~vD~aVlEv-G~G-Gr~D~tnii~~P~v~vITnIg 236 (1255)
..|-+. +... ++-.+.-.+.+.+| ...+.|++++|+ |.| .+.|-.++.+ ..+.+++.-.
T Consensus 91 ~vfIRS----------~atRG~lGGls~~t~~~v~ll-----~aaG~D~IiiETVGvGQsE~~I~~~aD-~~v~v~~Pg~ 154 (266)
T PF03308_consen 91 GVFIRS----------MATRGSLGGLSRATRDAVRLL-----DAAGFDVIIIETVGVGQSEVDIADMAD-TVVLVLVPGL 154 (266)
T ss_dssp TEEEEE----------E---SSHHHHHHHHHHHHHHH-----HHTT-SEEEEEEESSSTHHHHHHTTSS-EEEEEEESST
T ss_pred CEEEee----------cCcCCCCCCccHhHHHHHHHH-----HHcCCCEEEEeCCCCCccHHHHHHhcC-eEEEEecCCC
Confidence 222111 0000 11123444444444 668999999996 778 6788887763 2333444433
Q ss_pred cchhhhcCCCHHHHHHHHHcccCCCceeeecc
Q psy15432 237 YDHTAVLGNTIEEITMQKAGIMKPNCIAVTSA 268 (1255)
Q Consensus 237 ~DHld~lG~Tle~Ia~~KagI~k~g~~~v~~~ 268 (1255)
-|- |-..|+||+.-.-.+|++.
T Consensus 155 GD~----------iQ~~KaGimEiaDi~vVNK 176 (266)
T PF03308_consen 155 GDE----------IQAIKAGIMEIADIFVVNK 176 (266)
T ss_dssp CCC----------CCTB-TTHHHH-SEEEEE-
T ss_pred ccH----------HHHHhhhhhhhccEEEEeC
Confidence 332 3345888887666677776
|
In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A. |
| >TIGR00750 lao LAO/AO transport system ATPase | Back alignment and domain information |
|---|
Probab=92.41 E-value=1 Score=52.30 Aligned_cols=48 Identities=21% Similarity=0.243 Sum_probs=37.2
Q ss_pred HHHHHHHhcCcccccccceEEEecCCC--CCccHHHHHHHHHHHCCCCeEEEc
Q psy15432 703 VVQYLGHLNITLDDIKKLNVIHISGTK--GKGSTCAYCESILRSHGFSTGFFS 753 (1255)
Q Consensus 703 ~~~~L~~Lg~~~~~~~~l~vIhVTGTn--GKgST~aml~sILr~~G~rtGl~t 753 (1255)
...+|+.+.... ...++|.|+|.+ ||||++..+...|+..|++++++.
T Consensus 20 ~~~~~~~~~~~~---~~~~~i~i~G~~G~GKttl~~~l~~~~~~~~~~v~~i~ 69 (300)
T TIGR00750 20 AKQLLDRIMPYT---GNAHRVGITGTPGAGKSTLLEALGMELRRRGLKVAVIA 69 (300)
T ss_pred HHHHHHhCCccc---CCceEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 555666664322 456899999965 799999999999999999998865
|
Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however. |
| >TIGR03172 probable selenium-dependent hydroxylase accessory protein YqeC | Back alignment and domain information |
|---|
Probab=92.24 E-value=0.24 Score=55.57 Aligned_cols=37 Identities=24% Similarity=0.376 Sum_probs=34.8
Q ss_pred EEEecCCCCCccHHHHHHHHHHHCCCCeEEEcCcccc
Q psy15432 722 VIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLI 758 (1255)
Q Consensus 722 vIhVTGTnGKgST~aml~sILr~~G~rtGl~tSPhL~ 758 (1255)
+|+|+|.-||||+..-|+.-|+..|+|+.+-||-|+.
T Consensus 1 vi~~vG~gGKTtl~~~l~~~~~~~g~~v~~TTTT~m~ 37 (232)
T TIGR03172 1 VIAFVGAGGKTSTMFWLAAEYRKEGYRVLVTTTTRMF 37 (232)
T ss_pred CEEEEcCCcHHHHHHHHHHHHHHCCCeEEEECCcccc
Confidence 5899999999999999999999999999999999864
|
This uncharacterized protein family includes YqeC from Escherichia coli. A phylogenetic profiling analysis shows correlation with SelD, the selenium donor protein, even in species where SelD contributes to neither selenocysteine nor selenouridine biosynthesis. Instead, this family, and families TIGR03309 and TIGR03310 appear to mark selenium-dependent molybdenum hydroxylase maturation systems. |
| >PRK09435 membrane ATPase/protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=91.61 E-value=0.84 Score=53.89 Aligned_cols=35 Identities=20% Similarity=0.214 Sum_probs=30.4
Q ss_pred cceEEEecCCC--CCccHHHHHHHHHHHCCCCeEEEc
Q psy15432 719 KLNVIHISGTK--GKGSTCAYCESILRSHGFSTGFFS 753 (1255)
Q Consensus 719 ~l~vIhVTGTn--GKgST~aml~sILr~~G~rtGl~t 753 (1255)
+..+|+|+|.. ||||.+..+...|+..|+++++.+
T Consensus 55 ~~~~igi~G~~GaGKSTl~~~l~~~l~~~g~~v~vi~ 91 (332)
T PRK09435 55 NALRIGITGVPGVGKSTFIEALGMHLIEQGHKVAVLA 91 (332)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 34699999975 799999999999999999999874
|
|
| >PRK01077 cobyrinic acid a,c-diamide synthase; Validated | Back alignment and domain information |
|---|
Probab=91.00 E-value=0.26 Score=60.42 Aligned_cols=35 Identities=20% Similarity=0.258 Sum_probs=30.2
Q ss_pred ceEEEecCCC---CCccHHHHHHHHHHHCCCCeEEEcC
Q psy15432 720 LNVIHISGTK---GKGSTCAYCESILRSHGFSTGFFSS 754 (1255)
Q Consensus 720 l~vIhVTGTn---GKgST~aml~sILr~~G~rtGl~tS 754 (1255)
++.|-||||. |||+++.-|...|++.|++++.|-.
T Consensus 3 m~~i~I~gt~s~~GKT~it~~L~~~L~~~G~~V~~fK~ 40 (451)
T PRK01077 3 MPALVIAAPASGSGKTTVTLGLMRALRRRGLRVQPFKV 40 (451)
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHhCCCCcceeec
Confidence 4567888875 5999999999999999999999865
|
|
| >PRK13705 plasmid-partitioning protein SopA; Provisional | Back alignment and domain information |
|---|
Probab=87.87 E-value=1.1 Score=54.19 Aligned_cols=55 Identities=16% Similarity=0.119 Sum_probs=47.5
Q ss_pred cchHHHHHHHHHhcCCccCCC--CccEEEEc---CCCChhHHHHHHHHHHHHCCCCeEEE
Q psy15432 86 VQVDQVVQYLGHLNITLDDIK--KLNVIHIS---GTKGKGSTCAYCESILRSHGFSTGFF 140 (1255)
Q Consensus 86 ~~l~~~~~~L~~Lg~~~~~~~--~l~vIhVt---GTnGKgST~a~l~sIL~~~G~k~Gl~ 140 (1255)
+.++++.++++.++..+++-+ +.++|.|+ |=-||||||.-+++.|...|+||-++
T Consensus 82 ftL~ei~~lr~~~~~~~~r~~~~~~~vIai~n~KGGVGKTT~a~nLA~~LA~~G~rVLlI 141 (388)
T PRK13705 82 YTIEQINHMRDVFGTRLRRAEDVFPPVIGVAAHKGGVYKTSVSVHLAQDLALKGLRVLLV 141 (388)
T ss_pred cCHHHHHHHHHhhcccccccCCCCCeEEEEECCCCCchHHHHHHHHHHHHHhcCCCeEEE
Confidence 889999999999987765544 57899999 66789999999999999999999876
|
|
| >PRK09435 membrane ATPase/protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=87.56 E-value=5.1 Score=47.46 Aligned_cols=35 Identities=20% Similarity=0.214 Sum_probs=30.4
Q ss_pred CccEEEEcCCC--ChhHHHHHHHHHHHHCCCCeEEEc
Q psy15432 107 KLNVIHISGTK--GKGSTCAYCESILRSHGFSTGFFS 141 (1255)
Q Consensus 107 ~l~vIhVtGTn--GKgST~a~l~sIL~~~G~k~Gl~t 141 (1255)
+-.+|+|+|.. ||||++..+...|+..|++++++.
T Consensus 55 ~~~~igi~G~~GaGKSTl~~~l~~~l~~~g~~v~vi~ 91 (332)
T PRK09435 55 NALRIGITGVPGVGKSTFIEALGMHLIEQGHKVAVLA 91 (332)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 34599999986 799999999999999999999874
|
|
| >PRK01077 cobyrinic acid a,c-diamide synthase; Validated | Back alignment and domain information |
|---|
Probab=87.30 E-value=0.78 Score=56.36 Aligned_cols=35 Identities=20% Similarity=0.258 Sum_probs=30.5
Q ss_pred ccEEEEcCCC---ChhHHHHHHHHHHHHCCCCeEEEcC
Q psy15432 108 LNVIHISGTK---GKGSTCAYCESILRSHGFSTGFFSS 142 (1255)
Q Consensus 108 l~vIhVtGTn---GKgST~a~l~sIL~~~G~k~Gl~tS 142 (1255)
++.|-||||. |||++++-|...|++.|++++.|-.
T Consensus 3 m~~i~I~gt~s~~GKT~it~~L~~~L~~~G~~V~~fK~ 40 (451)
T PRK01077 3 MPALVIAAPASGSGKTTVTLGLMRALRRRGLRVQPFKV 40 (451)
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHhCCCCcceeec
Confidence 4678888886 4999999999999999999999865
|
|
| >PHA02519 plasmid partition protein SopA; Reviewed | Back alignment and domain information |
|---|
Probab=85.86 E-value=1.6 Score=52.67 Aligned_cols=56 Identities=18% Similarity=0.164 Sum_probs=46.8
Q ss_pred cchHHHHHHHHHhcCCccCC--CCccEEEEc---CCCChhHHHHHHHHHHHHCCCCeEEEc
Q psy15432 86 VQVDQVVQYLGHLNITLDDI--KKLNVIHIS---GTKGKGSTCAYCESILRSHGFSTGFFS 141 (1255)
Q Consensus 86 ~~l~~~~~~L~~Lg~~~~~~--~~l~vIhVt---GTnGKgST~a~l~sIL~~~G~k~Gl~t 141 (1255)
+.++++.++...++.++++. .+.++|.|+ |=-||||||.-+++.|...|+||-++-
T Consensus 82 ytl~eI~~lr~~~~~~~~r~~~~~~~vIav~n~KGGVGKTTta~nLA~~LA~~G~rVLlID 142 (387)
T PHA02519 82 YTIDQISHMRDHFGNPNQRPDDKNPVVLAVMSHKGGVYKTSSAVHTAQWLALQGHRVLLIE 142 (387)
T ss_pred EcHHHHHHHHHHhhccccCcCCCCceEEEEecCCCCCcHHHHHHHHHHHHHhCCCcEEEEe
Confidence 88999999999998765432 357899999 566799999999999999999997763
|
|
| >TIGR00379 cobB cobyrinic acid a,c-diamide synthase | Back alignment and domain information |
|---|
Probab=85.30 E-value=1.2 Score=54.58 Aligned_cols=28 Identities=14% Similarity=0.138 Sum_probs=25.1
Q ss_pred cCC-CCCccHHHHHHHHHHHCCCCeEEEc
Q psy15432 726 SGT-KGKGSTCAYCESILRSHGFSTGFFS 753 (1255)
Q Consensus 726 TGT-nGKgST~aml~sILr~~G~rtGl~t 753 (1255)
|+| .|||+++.-|...|++.|++++.|.
T Consensus 7 T~t~vGKT~vt~~L~~~L~~~G~~V~~fK 35 (449)
T TIGR00379 7 TSSGVGKTTISTGIMKALSRRKLRVQPFK 35 (449)
T ss_pred CCCCCcHHHHHHHHHHHHHHCCCceeEEc
Confidence 444 7999999999999999999999996
|
This model describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of carboxylic groups at positions A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation. |
| >COG0489 Mrp ATPases involved in chromosome partitioning [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=84.31 E-value=1.5 Score=50.26 Aligned_cols=117 Identities=16% Similarity=0.102 Sum_probs=66.9
Q ss_pred cceEEEecCCC---CCccHHHHHHHHHHHCCCCeEEE-------cCcccccccceeeeCCeecChhh--hhhHHHHHHHH
Q psy15432 719 KLNVIHISGTK---GKGSTCAYCESILRSHGFSTGFF-------SSPHLIEVRERIKLNGEPISYDK--FTKYFWTVYNA 786 (1255)
Q Consensus 719 ~l~vIhVTGTn---GKgST~aml~sILr~~G~rtGl~-------tSPhL~~~~ERI~InG~pIs~~~--f~~~~~~v~~~ 786 (1255)
..++|.||..+ ||+||+..++..|.+.|+|||+. +.|++...++.. |.+-.... +....... .
T Consensus 56 ~~~~I~V~S~kgGvGKStva~nLA~alA~~G~rVlliDaD~~gps~~~~l~~~~~~---g~~~~~~g~~~~~~~~~~--~ 130 (265)
T COG0489 56 VKNVIAVTSGKGGVGKSTVAVNLAAALAQLGKRVLLLDADLRGPSIPRMLGLENLP---GLTELLAGEALEPVIQHD--G 130 (265)
T ss_pred cceEEEEEeCCCCCcHHHHHHHHHHHHHhcCCcEEEEeCcCCCCchHHHhCCCCCC---CcccccCCCccccceecC--c
Confidence 45788888665 79999999999999999999996 334433332211 11111000 11100000 0
Q ss_pred HHHHhh--cCCCCCcHHHHHHHHHHHhhh---cCC-CCEEEEecccC-CccccccccCCCc
Q psy15432 787 LHAKRK--HAEDMPAYFKFLTVMSFYVFV---KEK-PDAVIMEVGIG-GRYDNTNIIPNTA 840 (1255)
Q Consensus 787 l~~~~~--~~~~~pt~Fe~lT~mAf~~F~---~~~-vD~aVlEVG~G-Gr~D~TNvi~~P~ 840 (1255)
++.+.- ....++.+-+.+.--++.-|+ ..+ .|++|+++.-| |..|.+-+-.-|+
T Consensus 131 ~~~lsi~~~~~~p~~~r~~l~s~~~~qll~~~~~~~~D~vIID~PP~~g~~d~~i~~~~~~ 191 (265)
T COG0489 131 IKVLSILPLGPVPVIPRGLLGSKAMLQLLEDVLWGEYDYVIIDTPPGTGDADATVLQRIPD 191 (265)
T ss_pred cceEEEEecCCCCCCChHhhhhHHHHHHHHHHhccCCCEEEEeCCCCchHHHHHHHhccCC
Confidence 111000 022345556666666655554 345 99999999888 7777766654454
|
|
| >PRK13705 plasmid-partitioning protein SopA; Provisional | Back alignment and domain information |
|---|
Probab=83.69 E-value=1.7 Score=52.37 Aligned_cols=55 Identities=16% Similarity=0.102 Sum_probs=45.0
Q ss_pred cchHHHHHHHHHhcCccccc--ccceEEEec---CCCCCccHHHHHHHHHHHCCCCeEEE
Q psy15432 698 VQVDQVVQYLGHLNITLDDI--KKLNVIHIS---GTKGKGSTCAYCESILRSHGFSTGFF 752 (1255)
Q Consensus 698 ~~v~~~~~~L~~Lg~~~~~~--~~l~vIhVT---GTnGKgST~aml~sILr~~G~rtGl~ 752 (1255)
+.++++.++++.++...+.. .+.++|.|+ |=-||||||.-++..|...|+||.+.
T Consensus 82 ftL~ei~~lr~~~~~~~~r~~~~~~~vIai~n~KGGVGKTT~a~nLA~~LA~~G~rVLlI 141 (388)
T PRK13705 82 YTIEQINHMRDVFGTRLRRAEDVFPPVIGVAAHKGGVYKTSVSVHLAQDLALKGLRVLLV 141 (388)
T ss_pred cCHHHHHHHHHhhcccccccCCCCCeEEEEECCCCCchHHHHHHHHHHHHHhcCCCeEEE
Confidence 67888888888776655433 347899999 66779999999999999999999776
|
|
| >cd03114 ArgK-like The function of this protein family is unkown | Back alignment and domain information |
|---|
Probab=82.81 E-value=6.7 Score=40.89 Aligned_cols=132 Identities=22% Similarity=0.271 Sum_probs=67.4
Q ss_pred EEEcCC--CChhHHHHHHHHHHHHCCCCeEEEcC-Cccc-----ccceeEEeCCeecChhhhhhHHHHHHHHHHhhhhc-
Q psy15432 111 IHISGT--KGKGSTCAYCESILRSHGFSTGFFSS-PHLI-----EVRERIKLNGEPISYDKFTKYFWTVYNALHAKRKH- 181 (1255)
Q Consensus 111 IhVtGT--nGKgST~a~l~sIL~~~G~k~Gl~tS-PhL~-----~~rERI~InG~~is~~~ft~~~~~v~~~l~~~~~~- 181 (1255)
|.+.|- .||||++..+...|.+.|.++.++.- |.-. -+.+++.++.....+..+... ....
T Consensus 2 i~~~G~~GsGKTt~~~~l~~~~~~~g~~v~ii~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~ 71 (148)
T cd03114 2 IGITGVPGAGKSTLIDALITALRARGKRVAVLAIDPSSPFSGGAILGDRIRMERHASDPGVFIRS----------LATRG 71 (148)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCCCCcccchhcCceEhhheecCCCceEEE----------cCCcC
Confidence 344443 48999999999999999999887542 1100 011222221110000000000 0000
Q ss_pred -cCC-cchHHHHHHHHhhhhhhccCCCEEEEeeccCCccccccccCCc-cEEEEcCCCcchhhhcCCCHHHHHHHHHccc
Q psy15432 182 -AED-MPAYFKFLTVMSFYVFVKEKPDAVIMEVGIGGRYDNTNIIPNT-AVVGITSLGYDHTAVLGNTIEEITMQKAGIM 258 (1255)
Q Consensus 182 -~~~-~p~~Fe~Lt~~A~~~F~~~~vD~aVlEvG~GGr~D~tnii~~P-~v~vITnIg~DHld~lG~Tle~Ia~~KagI~ 258 (1255)
... .....+.+..+ ...+.|++++++ -|-..+...++..- .+.++|+-. -.+.|+-.|..+|
T Consensus 72 ~~~~~~~~~~~~~~~~-----~~~~~D~iiIDt-aG~~~~~~~~~~~Ad~~ivv~tpe---------~~D~y~~~k~~~~ 136 (148)
T cd03114 72 FLGGLSRATPEVIRVL-----DAAGFDVIIVET-VGVGQSEVDIASMADTTVVVMAPG---------AGDDIQAIKAGIM 136 (148)
T ss_pred cccccchhHHHHHHHH-----HhcCCCEEEEEC-CccChhhhhHHHhCCEEEEEECCC---------chhHHHHhhhhHh
Confidence 000 01122233222 345899999999 55223333343322 255666655 3467999999998
Q ss_pred CCCceeeec
Q psy15432 259 KPNCIAVTS 267 (1255)
Q Consensus 259 k~g~~~v~~ 267 (1255)
...-.++++
T Consensus 137 ~~~~~~~~~ 145 (148)
T cd03114 137 EIADIVVVN 145 (148)
T ss_pred hhcCEEEEe
Confidence 876655554
|
The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems. |
| >cd03114 ArgK-like The function of this protein family is unkown | Back alignment and domain information |
|---|
Probab=82.34 E-value=6.2 Score=41.13 Aligned_cols=57 Identities=26% Similarity=0.325 Sum_probs=39.2
Q ss_pred cCCCCEEEEecccCCccccccccCCCc-EEEEcCCCchhhhhcCCCHHHHHHHHhccccCCceEEEcc
Q psy15432 814 KEKPDAVIMEVGIGGRYDNTNIIPNTA-VVGITSLGYDHTAVLGNTIEEITMQKAGIMKPNCIAVTSA 880 (1255)
Q Consensus 814 ~~~vD~aVlEVG~GGr~D~TNvi~~P~-VavITnIg~DHl~~LG~TleeIA~~KagI~K~g~~av~~~ 880 (1255)
..+.|++++++ .|-..+...++..-+ +.++|+-. -.+.|+--|..+|+....++++.
T Consensus 89 ~~~~D~iiIDt-aG~~~~~~~~~~~Ad~~ivv~tpe---------~~D~y~~~k~~~~~~~~~~~~~k 146 (148)
T cd03114 89 AAGFDVIIVET-VGVGQSEVDIASMADTTVVVMAPG---------AGDDIQAIKAGIMEIADIVVVNK 146 (148)
T ss_pred hcCCCEEEEEC-CccChhhhhHHHhCCEEEEEECCC---------chhHHHHhhhhHhhhcCEEEEeC
Confidence 45899999999 552333344444333 56677655 34689999999998887777764
|
The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems. |
| >PRK05632 phosphate acetyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=80.99 E-value=4.5 Score=52.38 Aligned_cols=26 Identities=31% Similarity=0.439 Sum_probs=24.7
Q ss_pred CCCccHHHHHHHHHHHCCCCeEEEcCc
Q psy15432 729 KGKGSTCAYCESILRSHGFSTGFFSSP 755 (1255)
Q Consensus 729 nGKgST~aml~sILr~~G~rtGl~tSP 755 (1255)
.|||++|.-|...|++.|+++|.|- |
T Consensus 14 ~GKT~vslgL~~~L~~~G~~Vg~fK-P 39 (684)
T PRK05632 14 VGLTSVSLGLMRALERKGVKVGFFK-P 39 (684)
T ss_pred CCHHHHHHHHHHHHHhCCCeEEEeC-C
Confidence 7999999999999999999999997 5
|
|
| >PHA02519 plasmid partition protein SopA; Reviewed | Back alignment and domain information |
|---|
Probab=80.93 E-value=2.6 Score=50.90 Aligned_cols=55 Identities=18% Similarity=0.166 Sum_probs=44.5
Q ss_pred cchHHHHHHHHHhcCccccc--ccceEEEec---CCCCCccHHHHHHHHHHHCCCCeEEE
Q psy15432 698 VQVDQVVQYLGHLNITLDDI--KKLNVIHIS---GTKGKGSTCAYCESILRSHGFSTGFF 752 (1255)
Q Consensus 698 ~~v~~~~~~L~~Lg~~~~~~--~~l~vIhVT---GTnGKgST~aml~sILr~~G~rtGl~ 752 (1255)
..++++.++.+.++.+.++. .+.++|.|+ |=-|||||+.-++..|...|+||-+.
T Consensus 82 ytl~eI~~lr~~~~~~~~r~~~~~~~vIav~n~KGGVGKTTta~nLA~~LA~~G~rVLlI 141 (387)
T PHA02519 82 YTIDQISHMRDHFGNPNQRPDDKNPVVLAVMSHKGGVYKTSSAVHTAQWLALQGHRVLLI 141 (387)
T ss_pred EcHHHHHHHHHHhhccccCcCCCCceEEEEecCCCCCcHHHHHHHHHHHHHhCCCcEEEE
Confidence 67888888888887654322 447899999 55679999999999999999999775
|
|
| >PRK00784 cobyric acid synthase; Provisional | Back alignment and domain information |
|---|
Probab=80.42 E-value=4.6 Score=50.24 Aligned_cols=34 Identities=26% Similarity=0.420 Sum_probs=29.8
Q ss_pred eEEEecCC---CCCccHHHHHHHHHHHCCCCeEEEcC
Q psy15432 721 NVIHISGT---KGKGSTCAYCESILRSHGFSTGFFSS 754 (1255)
Q Consensus 721 ~vIhVTGT---nGKgST~aml~sILr~~G~rtGl~tS 754 (1255)
+.|-|||| .|||+++.-|...|++.|++++.|-.
T Consensus 3 ~~ifItGT~T~vGKT~vt~~L~~~l~~~G~~v~~~Kp 39 (488)
T PRK00784 3 KALMVQGTASDAGKSTLVAGLCRILARRGYRVAPFKA 39 (488)
T ss_pred ceEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEecccc
Confidence 45778887 79999999999999999999998854
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 1255 | ||||
| 1o5z_A | 442 | Crystal Structure Of Folylpolyglutamate Synthase (T | 9e-26 | ||
| 1o5z_A | 442 | Crystal Structure Of Folylpolyglutamate Synthase (T | 9e-26 | ||
| 3n2a_A | 437 | Crystal Structure Of Bifunctional Folylpolyglutamat | 2e-24 | ||
| 3n2a_A | 437 | Crystal Structure Of Bifunctional Folylpolyglutamat | 2e-24 | ||
| 1w78_A | 422 | E.Coli Folc In Complex With Dhpp And Adp Length = 4 | 2e-22 | ||
| 1w78_A | 422 | E.Coli Folc In Complex With Dhpp And Adp Length = 4 | 2e-22 | ||
| 1fgs_A | 428 | Folylpolyglutamate Synthetase From Lactobacillus Ca | 3e-21 | ||
| 1fgs_A | 428 | Folylpolyglutamate Synthetase From Lactobacillus Ca | 3e-21 | ||
| 2gca_A | 428 | Apo Form Of L. Casei Fpgs Length = 428 | 5e-21 | ||
| 2gca_A | 428 | Apo Form Of L. Casei Fpgs Length = 428 | 5e-21 | ||
| 1jbv_A | 428 | Fpgs-Amppcp Complex Length = 428 | 1e-20 | ||
| 1jbv_A | 428 | Fpgs-Amppcp Complex Length = 428 | 1e-20 | ||
| 2gcb_A | 428 | G51sS52T DOUBLE MUTANT OF L. CASEI FPGS Length = 42 | 2e-20 | ||
| 2gcb_A | 428 | G51sS52T DOUBLE MUTANT OF L. CASEI FPGS Length = 42 | 2e-20 | ||
| 2gc6_A | 428 | S73a Mutant Of L. Casei Fpgs Length = 428 | 4e-20 | ||
| 2gc6_A | 428 | S73a Mutant Of L. Casei Fpgs Length = 428 | 4e-20 | ||
| 2gc5_A | 428 | G51s Mutant Of L. Casei Fpgs Length = 428 | 1e-19 | ||
| 2gc5_A | 428 | G51s Mutant Of L. Casei Fpgs Length = 428 | 1e-19 | ||
| 2vor_A | 487 | Crystal Structures Of Mycobacterium Tuberculosis Fo | 2e-16 | ||
| 2vor_A | 487 | Crystal Structures Of Mycobacterium Tuberculosis Fo | 2e-16 | ||
| 2vos_A | 487 | Mycobacterium Tuberculosis Folylpolyglutamate Synth | 3e-10 | ||
| 2vos_A | 487 | Mycobacterium Tuberculosis Folylpolyglutamate Synth | 3e-10 |
| >pdb|1O5Z|A Chain A, Crystal Structure Of Folylpolyglutamate Synthase (Tm0166) From Thermotoga Maritima At 2.10 A Resolution Length = 442 | Back alignment and structure |
|
| >pdb|1O5Z|A Chain A, Crystal Structure Of Folylpolyglutamate Synthase (Tm0166) From Thermotoga Maritima At 2.10 A Resolution Length = 442 | Back alignment and structure |
|
| >pdb|3N2A|A Chain A, Crystal Structure Of Bifunctional Folylpolyglutamate SynthaseDIHYDROFOLATE SYNTHASE FROM YERSINIA PESTIS CO92 Length = 437 | Back alignment and structure |
|
| >pdb|3N2A|A Chain A, Crystal Structure Of Bifunctional Folylpolyglutamate SynthaseDIHYDROFOLATE SYNTHASE FROM YERSINIA PESTIS CO92 Length = 437 | Back alignment and structure |
|
| >pdb|1W78|A Chain A, E.Coli Folc In Complex With Dhpp And Adp Length = 422 | Back alignment and structure |
|
| >pdb|1W78|A Chain A, E.Coli Folc In Complex With Dhpp And Adp Length = 422 | Back alignment and structure |
|
| >pdb|1FGS|A Chain A, Folylpolyglutamate Synthetase From Lactobacillus Casei Length = 428 | Back alignment and structure |
|
| >pdb|1FGS|A Chain A, Folylpolyglutamate Synthetase From Lactobacillus Casei Length = 428 | Back alignment and structure |
|
| >pdb|2GCA|A Chain A, Apo Form Of L. Casei Fpgs Length = 428 | Back alignment and structure |
|
| >pdb|2GCA|A Chain A, Apo Form Of L. Casei Fpgs Length = 428 | Back alignment and structure |
|
| >pdb|1JBV|A Chain A, Fpgs-Amppcp Complex Length = 428 | Back alignment and structure |
|
| >pdb|1JBV|A Chain A, Fpgs-Amppcp Complex Length = 428 | Back alignment and structure |
|
| >pdb|2GCB|A Chain A, G51sS52T DOUBLE MUTANT OF L. CASEI FPGS Length = 428 | Back alignment and structure |
|
| >pdb|2GCB|A Chain A, G51sS52T DOUBLE MUTANT OF L. CASEI FPGS Length = 428 | Back alignment and structure |
|
| >pdb|2GC6|A Chain A, S73a Mutant Of L. Casei Fpgs Length = 428 | Back alignment and structure |
|
| >pdb|2GC6|A Chain A, S73a Mutant Of L. Casei Fpgs Length = 428 | Back alignment and structure |
|
| >pdb|2GC5|A Chain A, G51s Mutant Of L. Casei Fpgs Length = 428 | Back alignment and structure |
|
| >pdb|2GC5|A Chain A, G51s Mutant Of L. Casei Fpgs Length = 428 | Back alignment and structure |
|
| >pdb|2VOR|A Chain A, Crystal Structures Of Mycobacterium Tuberculosis Folylpolyglutamate Synthase Complexed With Adp And Amppcp Length = 487 | Back alignment and structure |
|
| >pdb|2VOR|A Chain A, Crystal Structures Of Mycobacterium Tuberculosis Folylpolyglutamate Synthase Complexed With Adp And Amppcp Length = 487 | Back alignment and structure |
|
| >pdb|2VOS|A Chain A, Mycobacterium Tuberculosis Folylpolyglutamate Synthase Complexed With Adp Length = 487 | Back alignment and structure |
|
| >pdb|2VOS|A Chain A, Mycobacterium Tuberculosis Folylpolyglutamate Synthase Complexed With Adp Length = 487 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3nrs_A Dihydrofolate:folylpolyglutamate synthetase; structural genomics, center for structural genomics of infec diseases, csgid; HET: TLA MES; 1.80A {Yersinia pestis} PDB: 3n2a_A* 3pyz_A* 3qcz_A* Length = 437 | Back alignment and structure |
|---|
Score = 238 bits (609), Expect = 5e-69
Identities = 95/421 (22%), Positives = 154/421 (36%), Gaps = 85/421 (20%)
Query: 700 VDQVVQYLGHLNITLDDIKKLNVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIE 759
V QV + L L + ++GT GKG+TC E+IL + G G +SSPHL+
Sbjct: 38 VKQVAERLDLLK------PAPKIFTVAGTNGKGTTCCTLEAILLAAGLRVGVYSSPHLLR 91
Query: 760 VRERIKLNGEPISYDKFTKYFWTVYNALHAKRKHAEDMPA-YFKFLTVMSFYVFVKEKPD 818
ER+++ G+ +S + + F + D+ YF+F T+ + +F + K D
Sbjct: 92 YTERVRIQGQELSEAEHSHSFAQI-------EAGRGDISLTYFEFGTLSALQLFKQAKLD 144
Query: 819 AVIMEVGIGGRYDNTNII-PNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIMKPNCIAV 877
VI+EVG+GGR D TNI+ + A ITS+ DHT LG E I +KAG+ + AV
Sbjct: 145 VVILEVGLGGRLDATNIVDSDVAA--ITSIALDHTDWLGYDRESIGREKAGVFRGGKPAV 202
Query: 878 TSANQRGPCKQILLETSRALNCVLLEAPSILNYRWRGQPLDEDWKSTVQSINISLAIQLA 937
Q + + + L L D WK
Sbjct: 203 VGEPD---MPQSIADVAAELGAQLYRR-------------DVAWK--------------- 231
Query: 938 YLWMFRMNKSAELKSVIDKFLAEMRVSSPNETPGGQGHLSSCETPGGQGHLSFSETPGGQ 997
++ E Q + G+ L+ P
Sbjct: 232 --------------------FSQQEPFDQQEPVDQQIN--GWHWQCGERQLTGLPVPNVP 269
Query: 998 GHLTGNQS---SLLMGPHFEIDPKTYR-GIKACVWPGRVQVIRKNNFKYFLDGAHTTDSI 1053
N + ++L + + R G++A PGR QV+ + LD AH +
Sbjct: 270 LA---NAATALAVLHYSELPLSDEAIRQGLQAASLPGRFQVVSEQP-LLILDVAHNPHAA 325
Query: 1054 ELCAKWFLRKSEAEANPTQSKSSNVIQRILVFNVTGERDPTKLLSPLLQSNQFEYILVTP 1113
L + N ++ + V + ++D L+ L + E+
Sbjct: 326 RYLVNR-LAQVINPVNASKQG-----KVRAVVGMLSDKDIAGTLACLSERVD-EWYCAPL 378
Query: 1114 N 1114
Sbjct: 379 E 379
|
| >3nrs_A Dihydrofolate:folylpolyglutamate synthetase; structural genomics, center for structural genomics of infec diseases, csgid; HET: TLA MES; 1.80A {Yersinia pestis} PDB: 3n2a_A* 3pyz_A* 3qcz_A* Length = 437 | Back alignment and structure |
|---|
Score = 231 bits (592), Expect = 9e-67
Identities = 95/432 (21%), Positives = 155/432 (35%), Gaps = 96/432 (22%)
Query: 88 VDQVVQYLGHLNITLDDIKKLNVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIE 147
V QV + L L + ++GT GKG+TC E+IL + G G +SSPHL+
Sbjct: 38 VKQVAERLDLLK------PAPKIFTVAGTNGKGTTCCTLEAILLAAGLRVGVYSSPHLLR 91
Query: 148 VRERIKLNGEPISYDKFTKYFWTVYNALHAKRKHAEDMPA-YFKFLTVMSFYVFVKEKPD 206
ER+++ G+ +S + + F + D+ YF+F T+ + +F + K D
Sbjct: 92 YTERVRIQGQELSEAEHSHSFAQI-------EAGRGDISLTYFEFGTLSALQLFKQAKLD 144
Query: 207 AVIMEVGIGGRYDNTNII-PNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIMKPNCIAV 265
VI+EVG+GGR D TNI+ + A ITS+ DHT LG E I +KAG+ + AV
Sbjct: 145 VVILEVGLGGRLDATNIVDSDVAA--ITSIALDHTDWLGYDRESIGREKAGVFRGGKPAV 202
Query: 266 TSANQRGPCKQILLETSRALNCVLLEAPSILNYRWRGQPLDEDWKSTVQSINISLAIQLA 325
Q + + + L L D WK
Sbjct: 203 VGEPD---MPQSIADVAAELGAQLYRR-------------DVAWK--------------- 231
Query: 326 YLWMFRMNKSAELKSVIDKFLAEMRVSSPNETPGGQGHLSSCETPGGQGHLSFSETPGGQ 385
++ E Q + G+ L+ P
Sbjct: 232 --------------------FSQQEPFDQQEPVDQQIN--GWHWQCGERQLTGLPVPNVP 269
Query: 386 GHLTGNQS---SLLMGPHFEIDPKTYR-GIKACVWPGRVQVIRKNNFKYFLDGAHTTDSI 441
N + ++L + + R G++A PGR QV+ + LD AH +
Sbjct: 270 LA---NAATALAVLHYSELPLSDEAIRQGLQAASLPGRFQVVSEQP-LLILDVAHNPHAA 325
Query: 442 ELCAKWFLRKSEAEASSSRSVSSCPLDPTQSKSSNVIQRILVFNVTGERDPTKLLSPLLQ 501
L + ++S+ + V + ++D L+ L +
Sbjct: 326 RYLVNR-LAQVINPVNASKQG----------------KVRAVVGMLSDKDIAGTLACLSE 368
Query: 502 SNQFEYILVTPN 513
E+
Sbjct: 369 RVD-EWYCAPLE 379
|
| >1o5z_A Folylpolyglutamate synthase/dihydrofolate synthas; TM0166, structural genomics, JC protein structure initiative; 2.10A {Thermotoga maritima} SCOP: c.59.1.2 c.72.2.2 Length = 442 | Back alignment and structure |
|---|
Score = 236 bits (605), Expect = 2e-68
Identities = 71/254 (27%), Positives = 122/254 (48%), Gaps = 24/254 (9%)
Query: 89 DQVVQYL------GHLNITLDDI-----------KKLNVIHISGTKGKGSTCAYCESILR 131
+V++YL G + L+ I + IHI GT GKGS +IL
Sbjct: 16 LEVLRYLYHKRPMGKVKPGLERISMLLSKLGNPHLEYKTIHIGGTNGKGSVANMVSNILV 75
Query: 132 SHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTKYFWTVYNALHAKRKHAEDMPAYFKF 191
S G+ G + SPHL RERI+LN E IS + K + T+ L+ K P++F+
Sbjct: 76 SQGYRVGSYYSPHLSTFRERIRLNEEYISEEDVVKIYETMEPILNELDKEEIFSPSFFEV 135
Query: 192 LTVMSFYVFVKEKPDAVIMEVGIGGRYDNTNIIPNTAVVGITSLGYDHTAVLGNTIEEIT 251
+T M+F F ++ D ++EVG+GGR D TN++ I ++ DH LG TIE+I
Sbjct: 136 VTAMAFLYFAEKNVDIAVLEVGLGGRLDATNVV-FPLCSTIVTVDRDHEKTLGYTIEQIA 194
Query: 252 MQKAGIMKPNCIAVTSANQRGPCKQILLETSRALNCVLLEAP-----SILNYRWRGQPLD 306
+K+GI+K VT ++ +++ + +R + + + + + D
Sbjct: 195 WEKSGIIKERVPLVT-GERKREALKVMEDVARKKSSRMYVIDKDFSVKVKSLKLHENRFD 253
Query: 307 EDWKSTVQSINISL 320
++T + + +++
Sbjct: 254 YCGENTFEDLVLTM 267
|
| >1o5z_A Folylpolyglutamate synthase/dihydrofolate synthas; TM0166, structural genomics, JC protein structure initiative; 2.10A {Thermotoga maritima} SCOP: c.59.1.2 c.72.2.2 Length = 442 | Back alignment and structure |
|---|
Score = 236 bits (605), Expect = 2e-68
Identities = 71/254 (27%), Positives = 122/254 (48%), Gaps = 24/254 (9%)
Query: 701 DQVVQYL------GHLNITLDDI-----------KKLNVIHISGTKGKGSTCAYCESILR 743
+V++YL G + L+ I + IHI GT GKGS +IL
Sbjct: 16 LEVLRYLYHKRPMGKVKPGLERISMLLSKLGNPHLEYKTIHIGGTNGKGSVANMVSNILV 75
Query: 744 SHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTKYFWTVYNALHAKRKHAEDMPAYFKF 803
S G+ G + SPHL RERI+LN E IS + K + T+ L+ K P++F+
Sbjct: 76 SQGYRVGSYYSPHLSTFRERIRLNEEYISEEDVVKIYETMEPILNELDKEEIFSPSFFEV 135
Query: 804 LTVMSFYVFVKEKPDAVIMEVGIGGRYDNTNIIPNTAVVGITSLGYDHTAVLGNTIEEIT 863
+T M+F F ++ D ++EVG+GGR D TN++ I ++ DH LG TIE+I
Sbjct: 136 VTAMAFLYFAEKNVDIAVLEVGLGGRLDATNVV-FPLCSTIVTVDRDHEKTLGYTIEQIA 194
Query: 864 MQKAGIMKPNCIAVTSANQRGPCKQILLETSRALNCVLLEAP-----SILNYRWRGQPLD 918
+K+GI+K VT ++ +++ + +R + + + + + D
Sbjct: 195 WEKSGIIKERVPLVT-GERKREALKVMEDVARKKSSRMYVIDKDFSVKVKSLKLHENRFD 253
Query: 919 EDWKSTVQSINISL 932
++T + + +++
Sbjct: 254 YCGENTFEDLVLTM 267
|
| >1o5z_A Folylpolyglutamate synthase/dihydrofolate synthas; TM0166, structural genomics, JC protein structure initiative; 2.10A {Thermotoga maritima} SCOP: c.59.1.2 c.72.2.2 Length = 442 | Back alignment and structure |
|---|
Score = 49.5 bits (119), Expect = 5e-06
Identities = 20/103 (19%), Positives = 34/103 (33%), Gaps = 14/103 (13%)
Query: 1013 FEIDPKT-YRGIKACVWPGRVQVIRKNNFKYFLDGAHTTDSIELCAKWFLRKSEAEANPT 1071
+ K G+K GR +++ KN Y LDGAH E L +S
Sbjct: 288 LPLSEKAIREGLKNAKNLGRFEILEKNGKMYILDGAHNPHGAES-----LVRSLKLYFNG 342
Query: 1072 QSKSSNVIQRILVFNVTGERDPTKLLSPLLQSNQFEYILVTPN 1114
+ LV + +++ +L + I+
Sbjct: 343 E-------PLSLVIGILDDKNREDILRKYTGIFE-RVIVTRVP 377
|
| >1o5z_A Folylpolyglutamate synthase/dihydrofolate synthas; TM0166, structural genomics, JC protein structure initiative; 2.10A {Thermotoga maritima} SCOP: c.59.1.2 c.72.2.2 Length = 442 | Back alignment and structure |
|---|
Score = 46.0 bits (110), Expect = 7e-05
Identities = 30/144 (20%), Positives = 46/144 (31%), Gaps = 37/144 (25%)
Query: 1087 VTGERDP----------TKLLSPLLQSNQ-FEYILVTPNILTNEIRWRGQPLDEDWKS-- 1133
VTGER K S + ++ F + + + N + G+ ED
Sbjct: 208 VTGERKREALKVMEDVARKKSSRMYVIDKDFSVKVKSLKLHENRFDYCGENTFEDLVLTM 267
Query: 1134 --TVQSINISLAIQLAYLWMFRMNKSAELKRNQSSLPMGPHFEIDPKT-YRGIKACVWPG 1190
Q N +A++ E + K G+K G
Sbjct: 268 NGPHQIENAGVALKTL-----------EAT----------GLPLSEKAIREGLKNAKNLG 306
Query: 1191 RVQVIRKNNFKYFLDGAHTTDSIE 1214
R +++ KN Y LDGAH E
Sbjct: 307 RFEILEKNGKMYILDGAHNPHGAE 330
|
| >1o5z_A Folylpolyglutamate synthase/dihydrofolate synthas; TM0166, structural genomics, JC protein structure initiative; 2.10A {Thermotoga maritima} SCOP: c.59.1.2 c.72.2.2 Length = 442 | Back alignment and structure |
|---|
Score = 45.6 bits (109), Expect = 8e-05
Identities = 20/114 (17%), Positives = 34/114 (29%), Gaps = 25/114 (21%)
Query: 401 FEIDPKT-YRGIKACVWPGRVQVIRKNNFKYFLDGAHTTDSIELCAKWFLRKSEAEASSS 459
+ K G+K GR +++ KN Y LDGAH E L +S +
Sbjct: 288 LPLSEKAIREGLKNAKNLGRFEILEKNGKMYILDGAHNPHGAES-----LVRSLKLYFNG 342
Query: 460 RSVSSCPLDPTQSKSSNVIQRILVFNVTGERDPTKLLSPLLQSNQFEYILVTPN 513
LV + +++ +L + I+
Sbjct: 343 E------------------PLSLVIGILDDKNREDILRKYTGIFE-RVIVTRVP 377
|
| >1jbw_A Folylpolyglutamate synthase; FPGS folate AMPPCP ternary complex, ligase; HET: KCX ACQ TMF; 1.85A {Lactobacillus casei} SCOP: c.59.1.2 c.72.2.2 PDB: 1fgs_A* 1jbv_A* 2gca_A 2gc5_A* 2gc6_A* 2gcb_A Length = 428 | Back alignment and structure |
|---|
Score = 232 bits (595), Expect = 3e-67
Identities = 56/188 (29%), Positives = 92/188 (48%), Gaps = 3/188 (1%)
Query: 106 KKLNVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFT 165
++ IH++GT GKGS +L + G + G ++SP ++ ERI ++ EPI
Sbjct: 37 QQGRYIHVTGTNGKGSAANAIAHVLEASGLTVGLYTSPFIMRFNERIMIDHEPIPDAALV 96
Query: 166 KYFWTVYNALHA-KRKHAEDMPAYFKFLTVMSFYVFVKEKPDAVIMEVGIGGRYDNTNII 224
V AL +++ A+ F+F+T ++++ F + + D ++EVGIGG D+TN+I
Sbjct: 97 NAVAFVRAALERLQQQQADFNVTEFEFITALAYWYFRQRQVDVAVIEVGIGGDTDSTNVI 156
Query: 225 PNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIMKPNCIAVTSANQRGPCKQILLETSRA 284
V +T + DH +LG+TI I KAGI+K VT N ++
Sbjct: 157 -TPVVSVLTEVALDHQKLLGHTITAIAKHKAGIIKRGIPVVT-GNLVPDAAAVVAAKVAT 214
Query: 285 LNCVLLEA 292
L
Sbjct: 215 TGSQWLRF 222
|
| >1jbw_A Folylpolyglutamate synthase; FPGS folate AMPPCP ternary complex, ligase; HET: KCX ACQ TMF; 1.85A {Lactobacillus casei} SCOP: c.59.1.2 c.72.2.2 PDB: 1fgs_A* 1jbv_A* 2gca_A 2gc5_A* 2gc6_A* 2gcb_A Length = 428 | Back alignment and structure |
|---|
Score = 232 bits (595), Expect = 3e-67
Identities = 56/188 (29%), Positives = 92/188 (48%), Gaps = 3/188 (1%)
Query: 718 KKLNVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFT 777
++ IH++GT GKGS +L + G + G ++SP ++ ERI ++ EPI
Sbjct: 37 QQGRYIHVTGTNGKGSAANAIAHVLEASGLTVGLYTSPFIMRFNERIMIDHEPIPDAALV 96
Query: 778 KYFWTVYNALHA-KRKHAEDMPAYFKFLTVMSFYVFVKEKPDAVIMEVGIGGRYDNTNII 836
V AL +++ A+ F+F+T ++++ F + + D ++EVGIGG D+TN+I
Sbjct: 97 NAVAFVRAALERLQQQQADFNVTEFEFITALAYWYFRQRQVDVAVIEVGIGGDTDSTNVI 156
Query: 837 PNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIMKPNCIAVTSANQRGPCKQILLETSRA 896
V +T + DH +LG+TI I KAGI+K VT N ++
Sbjct: 157 -TPVVSVLTEVALDHQKLLGHTITAIAKHKAGIIKRGIPVVT-GNLVPDAAAVVAAKVAT 214
Query: 897 LNCVLLEA 904
L
Sbjct: 215 TGSQWLRF 222
|
| >1jbw_A Folylpolyglutamate synthase; FPGS folate AMPPCP ternary complex, ligase; HET: KCX ACQ TMF; 1.85A {Lactobacillus casei} SCOP: c.59.1.2 c.72.2.2 PDB: 1fgs_A* 1jbv_A* 2gca_A 2gc5_A* 2gc6_A* 2gcb_A Length = 428 | Back alignment and structure |
|---|
Score = 43.3 bits (103), Expect = 4e-04
Identities = 18/109 (16%), Positives = 39/109 (35%), Gaps = 15/109 (13%)
Query: 1007 LLMGPHFEIDPKT-YRGIKACVWPGRVQVIRKNNFKYFLDGAHTTDSIELCAKWFLRKSE 1065
+ + P+ +G+ A WP R++ I +DGAH D I L++
Sbjct: 275 YAKQTEWPLTPQNIRQGLAASHWPARLEKISDTP-LIVIDGAHNPDGINGLIT-ALKQLF 332
Query: 1066 AEANPTQSKSSNVIQRILVFNVTGERDPTKLLSPLLQSNQFEYILVTPN 1114
++ ++ + ++D + L + Y++ P
Sbjct: 333 SQ------------PITVIAGILADKDYAAMADRLTAAFSTVYLVPVPG 369
|
| >1w78_A FOLC bifunctional protein; DHFS, dihydrofolate synthase, synthase, ATP-binding, folate biosynthesis, ligase, multifunctional enzyme; HET: KCX PD8 ADP; 1.82A {Escherichia coli} PDB: 1w7k_A* Length = 422 | Back alignment and structure |
|---|
Score = 230 bits (589), Expect = 1e-66
Identities = 90/418 (21%), Positives = 149/418 (35%), Gaps = 98/418 (23%)
Query: 700 VDQVVQYLGHLNITLDDIKKLNVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIE 759
V V LG L V ++GT GKG+TC ESIL + G+ G +SSPHL+
Sbjct: 35 VSLVAARLGVLK------PAPFVFTVAGTNGKGTTCRTLESILMAAGYKVGVYSSPHLVR 88
Query: 760 VRERIKLNGEPISYDKFTKYFWTVYNALHAKRKHAEDMPA-YFKFLTVMSFYVFVKEKPD 818
ER+++ G+ + T F + D+ YF++ T+ + ++F + + D
Sbjct: 89 YTERVRVQGQELPESAHTASFAEI-------ESARGDISLTYFEYGTLSALWLFKQAQLD 141
Query: 819 AVIMEVGIGGRYDNTNII-PNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIMKPNCIAV 877
VI+EVG+GGR D TNI+ + AV +TS+ DHT LG E I +KAGI + A+
Sbjct: 142 VVILEVGLGGRLDATNIVDADVAV--VTSIALDHTDWLGPDRESIGREKAGIFRSEKPAI 199
Query: 878 TSANQRGPCKQILLETSRALNCVLLEAPSILNYRWRGQPLDEDWKSTVQSINISLAIQLA 937
+ + + ++ +L +W +V
Sbjct: 200 VGEPE---MPSTIADVAQEKGALLQRR-------------GVEWNYSVT----------D 233
Query: 938 YLWMFRMNKSAELKSVIDKFLAEMRVSSPNETPGGQGHLSSCETPGGQGHLSFSETPGGQ 997
+ W F G L P
Sbjct: 234 HDWAFS---------------------------------------DAHGTLENLPLPLVP 254
Query: 998 GHLTGNQSSLLMGPHFEIDPKTYR-GIKACVWPGRVQVIRKNNFKYFLDGAHTTDSIELC 1056
+ L E+ R GI + + PGR Q++ + + + D AH + E
Sbjct: 255 QPNAATALAALRASGLEVSENAIRDGIASAILPGRFQIVSE-SPRVIFDVAHNPHAAE-- 311
Query: 1057 AKWFLRKSEAEANPTQSKSSNVIQRILVFNVTGERDPTKLLSPLLQSNQFEYILVTPN 1114
+L + + V + ++D L+ L + + P
Sbjct: 312 ---YLTGRMKALPKNG-------RVLAVIGMLHDKDIAGTLAWLK--SVVDDWYCAPL 357
|
| >1w78_A FOLC bifunctional protein; DHFS, dihydrofolate synthase, synthase, ATP-binding, folate biosynthesis, ligase, multifunctional enzyme; HET: KCX PD8 ADP; 1.82A {Escherichia coli} PDB: 1w7k_A* Length = 422 | Back alignment and structure |
|---|
Score = 226 bits (580), Expect = 2e-65
Identities = 83/352 (23%), Positives = 132/352 (37%), Gaps = 84/352 (23%)
Query: 88 VDQVVQYLGHLNITLDDIKKLNVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIE 147
V V LG L V ++GT GKG+TC ESIL + G+ G +SSPHL+
Sbjct: 35 VSLVAARLGVLK------PAPFVFTVAGTNGKGTTCRTLESILMAAGYKVGVYSSPHLVR 88
Query: 148 VRERIKLNGEPISYDKFTKYFWTVYNALHAKRKHAEDMPA-YFKFLTVMSFYVFVKEKPD 206
ER+++ G+ + T F + D+ YF++ T+ + ++F + + D
Sbjct: 89 YTERVRVQGQELPESAHTASFAEI-------ESARGDISLTYFEYGTLSALWLFKQAQLD 141
Query: 207 AVIMEVGIGGRYDNTNII-PNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIMKPNCIAV 265
VI+EVG+GGR D TNI+ + AV +TS+ DHT LG E I +KAGI + A+
Sbjct: 142 VVILEVGLGGRLDATNIVDADVAV--VTSIALDHTDWLGPDRESIGREKAGIFRSEKPAI 199
Query: 266 TSANQRGPCKQILLETSRALNCVLLEAPSILNYRWRGQPLDEDWKSTVQSINISLAIQLA 325
+ + + ++ +L +W +V
Sbjct: 200 VGEPE---MPSTIADVAQEKGALLQRR-------------GVEWNYSVT----------D 233
Query: 326 YLWMFRMNKSAELKSVIDKFLAEMRVSSPNETPGGQGHLSSCETPGGQGHLSFSETPGGQ 385
+ W F G L P
Sbjct: 234 HDWAFS---------------------------------------DAHGTLENLPLPLVP 254
Query: 386 GHLTGNQSSLLMGPHFEIDPKTYR-GIKACVWPGRVQVIRKNNFKYFLDGAH 436
+ L E+ R GI + + PGR Q++ + + + D AH
Sbjct: 255 QPNAATALAALRASGLEVSENAIRDGIASAILPGRFQIVSE-SPRVIFDVAH 305
|
| >2vos_A Folylpolyglutamate synthase protein FOLC; ligase, peptidoglycan synthesis, cell division; HET: ADP; 2.0A {Mycobacterium tuberculosis} PDB: 2vor_A* Length = 487 | Back alignment and structure |
|---|
Score = 223 bits (571), Expect = 2e-63
Identities = 62/236 (26%), Positives = 103/236 (43%), Gaps = 25/236 (10%)
Query: 88 VDQVVQYLGHLNITLDDIKKLNVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIE 147
+ ++ LG + IHI+GT GK S ++++ + TG +SPHL
Sbjct: 50 ISALMDLLGSPQ------RSYPSIHIAGTNGKTSVARMVDALVTALHRRTGRTTSPHLQS 103
Query: 148 VRERIKLNGEPISYDKFTKYFWTVYNALHAKRKHAEDMPA-------YFKFLTVMSFYVF 200
ERI ++G+PIS ++ + + + + ++ F+ LT M+F F
Sbjct: 104 PVERISIDGKPISPAQYVATYREIEPLVALIDQQSQASAGKGGPAMSKFEVLTAMAFAAF 163
Query: 201 VKEKPDAVIMEVGIGGRYDNTNII-PNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIMK 259
D ++EVG+GGR+D TN+I AV IT + DH LG I I +KAGI+
Sbjct: 164 ADAPVDVAVVEVGMGGRWDATNVINAPVAV--ITPISIDHVDYLGADIAGIAGEKAGIIT 221
Query: 260 ------PNCIAVTSANQRGPCKQILLETSRALNCVLLEAPSILNYRWRGQPLDEDW 309
P+ +AV Q ++LL S + + S + + +
Sbjct: 222 RAPDGSPDTVAVI-GRQVPKVMEVLLAESVRADASVAREDS--EFAVLRRQIAVGG 274
|
| >2vos_A Folylpolyglutamate synthase protein FOLC; ligase, peptidoglycan synthesis, cell division; HET: ADP; 2.0A {Mycobacterium tuberculosis} PDB: 2vor_A* Length = 487 | Back alignment and structure |
|---|
Score = 223 bits (571), Expect = 2e-63
Identities = 62/236 (26%), Positives = 103/236 (43%), Gaps = 25/236 (10%)
Query: 700 VDQVVQYLGHLNITLDDIKKLNVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIE 759
+ ++ LG + IHI+GT GK S ++++ + TG +SPHL
Sbjct: 50 ISALMDLLGSPQ------RSYPSIHIAGTNGKTSVARMVDALVTALHRRTGRTTSPHLQS 103
Query: 760 VRERIKLNGEPISYDKFTKYFWTVYNALHAKRKHAEDMPA-------YFKFLTVMSFYVF 812
ERI ++G+PIS ++ + + + + ++ F+ LT M+F F
Sbjct: 104 PVERISIDGKPISPAQYVATYREIEPLVALIDQQSQASAGKGGPAMSKFEVLTAMAFAAF 163
Query: 813 VKEKPDAVIMEVGIGGRYDNTNII-PNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIMK 871
D ++EVG+GGR+D TN+I AV IT + DH LG I I +KAGI+
Sbjct: 164 ADAPVDVAVVEVGMGGRWDATNVINAPVAV--ITPISIDHVDYLGADIAGIAGEKAGIIT 221
Query: 872 ------PNCIAVTSANQRGPCKQILLETSRALNCVLLEAPSILNYRWRGQPLDEDW 921
P+ +AV Q ++LL S + + S + + +
Sbjct: 222 RAPDGSPDTVAVI-GRQVPKVMEVLLAESVRADASVAREDS--EFAVLRRQIAVGG 274
|
| >2vos_A Folylpolyglutamate synthase protein FOLC; ligase, peptidoglycan synthesis, cell division; HET: ADP; 2.0A {Mycobacterium tuberculosis} PDB: 2vor_A* Length = 487 | Back alignment and structure |
|---|
Score = 42.7 bits (101), Expect = 6e-04
Identities = 21/109 (19%), Positives = 38/109 (34%), Gaps = 15/109 (13%)
Query: 1007 LLMGPHFEIDPKTYR-GIKACVWPGRVQVIRKNNFKYFLDGAHTTDSIELCAKWFLRKSE 1065
G ++D R G A PGR++ +R F+D AH L ++
Sbjct: 313 FGAGAQRQLDGDAVRAGFAAVTSPGRLERMRSAP-TVFIDAAHNPAGASA-----LAQTL 366
Query: 1066 AEANPTQSKSSNVIQRILVFNVTGERDPTKLLSPLLQSNQFEYILVTPN 1114
A + + V +V G++D +L+ L ++
Sbjct: 367 AHEFDFR-------FLVGVLSVLGDKDVDGILAALEPVFD-SVVVTHNG 407
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 61.8 bits (149), Expect = 1e-09
Identities = 86/610 (14%), Positives = 175/610 (28%), Gaps = 159/610 (26%)
Query: 586 NVNDQSNSFHKIATVASALSQRSKVVEFSSVLDTYNFKYGLDPSKEY-HIL-----VTGS 639
+ + I +V V+ D + + +E HI+ V+G+
Sbjct: 10 ETGEHQYQYKDILSVF-----EDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGT 64
Query: 640 LHLVGAFLNVLITPHASRSNKEIPQSYVDAIKQLNT--LQSNIRTIRESKLRKDPVEMQA 697
L L L +E+ Q +V+ + ++N L S I+T E + M
Sbjct: 65 LRLFWTLL---------SKQEEMVQKFVEEVLRINYKFLMSPIKT--EQRQPSMMTRMYI 113
Query: 698 VQVDQV---VQYLGHLNIT-LDDIKKLN------------VIHISGTKGKGSTC-AYCES 740
Q D++ Q N++ L KL +I G G G T A
Sbjct: 114 EQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLID--GVLGSGKTWVA--LD 169
Query: 741 ILRSHGFSTGFFSSPHLIEVRERIKLNG--EPIS--YDKFTKYFWTVYNALHAKRKHAED 796
+ S+ + ++ E + + + + + +
Sbjct: 170 VCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHS 229
Query: 797 MPAYFKFLTVMSFY---------VFVKEKPDAVIMEVG----IGGRY-DNTNIIPNTAVV 842
+ A + L Y V + +A + + R+ T+ +
Sbjct: 230 IQAELRRLLKSKPYENCLLVLLNVQNAKAWNA--FNLSCKILLTTRFKQVTDFLSAATTT 287
Query: 843 GIT----SLGYDHT-------AVLGNTIEEITMQKAGIMKPNCIAVTSANQR-GPC---- 886
I+ S+ L +++ + P +++ + + R G
Sbjct: 288 HISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTN-PRRLSIIAESIRDGLATWDN 346
Query: 887 -KQI-------LLETS---------RAL--NCVLLEA-----PSILNYRWRGQP------ 916
K + ++E+S R + + +L+ W
Sbjct: 347 WKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMV 406
Query: 917 ----------LDEDWKSTVQSINISLAIQLAYLWMFRMNKSAEL-KSVIDKFLAEMRVSS 965
+++ K + SI +I L ++ L +S++D + S
Sbjct: 407 VVNKLHKYSLVEKQPKESTISIP---SIYLELK--VKLENEYALHRSIVDHYNIPKTFDS 461
Query: 966 PNETPGGQ--------GHLSSCETPGGQGHLSFSETPGGQGHLTGNQSSLLMGPHFEIDP 1017
+ P GH HL E + + F ++
Sbjct: 462 DDLIPPYLDQYFYSHIGH-----------HLKNIE----HPERMTLFRMVFLDFRF-LEQ 505
Query: 1018 KTYRGIKACVWPGRV----QVIRKNNFKYFLDGAHTTDSIELCAKWFLRKSEAEANPTQS 1073
K A G + Q ++ Y D + + FL K E N S
Sbjct: 506 KIRHDSTAWNASGSILNTLQQLKFYK-PYICDNDPKYERLVNAILDFLPK--IEENLICS 562
Query: 1074 KSSNVIQRIL 1083
K +++++ L
Sbjct: 563 KYTDLLRIAL 572
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 54.5 bits (130), Expect = 2e-07
Identities = 69/506 (13%), Positives = 146/506 (28%), Gaps = 140/506 (27%)
Query: 402 EID-----PKTYRGIKACVWPGRVQVIRKNNFKYFLDGAHTTDSIELCAKWFLRKSEAEA 456
EID G W + ++ + F++ + K+ + + E
Sbjct: 50 EIDHIIMSKDAVSGTLRLFWTLLSK--QEEMVQKFVEEVLRINY-----KFLMSPIKTE- 101
Query: 457 SSSRSVSSCPLDPTQSKSSNVIQRILVFNVTGERDPTKLLSPLLQSNQFEYILV------ 510
S+ + + + N Q +NV+ + KL LL+ + +L+
Sbjct: 102 QRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGS 161
Query: 511 --TPNILTNESSPDTQ------YG------GNRTIDR--------FGVKLDSRTAAPNGG 548
T + + + + N ++D + +
Sbjct: 162 GKT--WVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDH 219
Query: 549 HEPGRPNVGQGGGG----FQSRSGDNSIRSNANPLSSVDCHNVNDQSNSFHKIATVASAL 604
+ + +S+ +N L + NV + A +A
Sbjct: 220 SSNIKLRIHSIQAELRRLLKSKPYENC-------LLVLL--NVQN--------AKAWNAF 262
Query: 605 SQRSKVV---EFSSVLDTYNFKYGLDPSKEYHILVTG---------SLHLVGAFLNVLIT 652
+ K++ F V D L + HI + L+ +L+
Sbjct: 263 NLSCKILLTTRFKQVTDF------LSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQ 316
Query: 653 --PH-ASRSN----KEIPQSYVDAIKQLNTLQ----SNIRTIRESKLRK-DPVEMQAVQV 700
P +N I +S D + + + + TI ES L +P E +
Sbjct: 317 DLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYR---- 372
Query: 701 DQVVQYLGHLNITLDDIK-KLNVIHISGTKGKGSTCAYCESILRS-HGFS------TGFF 752
+ L++ ++ + S ++ H +S
Sbjct: 373 ----KMFDRLSVFPPSAHIPTILLSLIWFDVIKSD---VMVVVNKLHKYSLVEKQPKEST 425
Query: 753 SSPHLIEVRERIKLNGE-------------PISYDKFT-------KYFWTVYNALHAKRK 792
S I + ++KL E P ++D +YF++ + H K
Sbjct: 426 ISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYS-HIGHHLKNI 484
Query: 793 HAEDMPAYFK--FLTVMSFYVFVKEK 816
+ F+ FL + F+++K
Sbjct: 485 EHPERMTLFRMVFLD----FRFLEQK 506
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 53.3 bits (127), Expect = 5e-07
Identities = 88/613 (14%), Positives = 176/613 (28%), Gaps = 192/613 (31%)
Query: 3 KDDVDVLKELKLNKDAHRKTLPD-------KTEVHHGGYKHGAVTPHAS----------- 44
KD + V ++ + K + D K E+ H ++ A
Sbjct: 19 KDILSVFED-AFVDNFDCKDVQDMPKSILSKEEI-----DHIIMSKDAVSGTLRLFWTLL 72
Query: 45 RSNKEIPQSYVDAIKQLNT--LQSNIRTIRESKLRKDPVEMQAVQVDQV---VQYLGHLN 99
+E+ Q +V+ + ++N L S I+T E + M Q D++ Q N
Sbjct: 73 SKQEEMVQKFVEEVLRINYKFLMSPIKT--EQRQPSMMTRMYIEQRDRLYNDNQVFAKYN 130
Query: 100 IT-LDDIKKLN------------VIHISGTKGKGSTC-AYCESILRSHGFSTGFFSSPHL 145
++ L KL +I G G G T A + S+
Sbjct: 131 VSRLQPYLKLRQALLELRPAKNVLID--GVLGSGKTWVA--LDVCLSYKVQCKMDFKIFW 186
Query: 146 IEVRERIKLNG--EPIS--YDKFTKYFWTVYNALHAKRKHAEDMPAYFKFLTVMSFY--- 198
+ ++ E + + + + + + + A + L Y
Sbjct: 187 LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENC 246
Query: 199 ------VFVKEKPDAVIMEVG----IGGRY-DNTNIIPNTAVVGIT----SLGYDHT--- 240
V + +A + + R+ T+ + I+ S+
Sbjct: 247 LLVLLNVQNAKAWNA--FNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVK 304
Query: 241 ----AVLGNTIEEITMQKAGIMKPNCIAVTSANQR-GPC-----KQILLET-----SRAL 285
L +++ + P +++ + + R G K + + +L
Sbjct: 305 SLLLKYLDCRPQDLPREVLTTN-PRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSL 363
Query: 286 NCVLLEAPSILNYRWRGQPLDEDWKSTVQSINISLAIQLAYLW--------MFRMNKSAE 337
N LE R +I + L+ +W M +NK +
Sbjct: 364 NV--LEPAEYRKMFDRLSVFPPS-------AHIPTIL-LSLIWFDVIKSDVMVVVNKLHK 413
Query: 338 LKSVIDKFLAEMRVSSPNETPGGQGHLSSCETPGGQGHLSFSETPGGQGHLTGNQSSLLM 397
S+++K E +S P+ +L + L H S++
Sbjct: 414 -YSLVEKQPKESTISIPS------IYLELKVKLENEYAL----------H-----RSIV- 450
Query: 398 GPHFEIDPKTYRGIKACVWPGRVQVIRKNNFKYF-------LDGAHTTDSIELCAKWFL- 449
H+ I PKT+ +I +YF L + + L FL
Sbjct: 451 -DHYNI-PKTF-----DSD----DLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLD 499
Query: 450 -----RKSEAEASSSRSVSS---------------CPLDPT------------------- 470
+K ++++ + S C DP
Sbjct: 500 FRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENL 559
Query: 471 -QSKSSNVIQRIL 482
SK +++++ L
Sbjct: 560 ICSKYTDLLRIAL 572
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 48.3 bits (114), Expect = 2e-05
Identities = 104/697 (14%), Positives = 186/697 (26%), Gaps = 241/697 (34%)
Query: 658 SNKEIPQSYVDAIKQ---LNTLQSNIRTIRESKLRKDPVEMQAVQVDQVVQYLGHLNITL 714
K+I + DA +Q ++I L K+ ++ + V L TL
Sbjct: 17 QYKDILSVFEDAFVDNFDCKDVQDMPKSI----LSKEEID-HIIMSKDAVSGTLRLFWTL 71
Query: 715 DDIKKLNVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKLNGEPISY- 773
K + + E +LR + F SP E R+ + I
Sbjct: 72 LS------------KQEEMVQKFVEEVLRI---NYKFLMSPIKTEQRQPSMMTRMYIEQR 116
Query: 774 -------DKFTKYFWTVYNALHAKRKHAEDMPAYFKFLTVMSFYVFVKEKPDAVIMEVGI 826
F KY + R+ ++ +P ++ G+
Sbjct: 117 DRLYNDNQVFAKYNVSRLQPYLKLRQALLEL------------------RPAKNVLIDGV 158
Query: 827 GGRYDNTNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIMKPNCIA-VTSANQRGP 885
G G T + D V + + M I + N P
Sbjct: 159 LG-------------SGKTWVALD---VCLSYKVQCKM-------DFKIFWLNLKNCNSP 195
Query: 886 CKQILLETSRALNCVLLEAPSILNYRWRGQPLDEDWKSTV-QSINISLAIQ-----LAYL 939
ET +LE L Y+ +D +W S S NI L I L L
Sbjct: 196 ------ET-------VLEMLQKLLYQ-----IDPNWTSRSDHSSNIKLRIHSIQAELRRL 237
Query: 940 WMFRMNKSAEL-------KSVIDKF------LAEMRVSSPNETPGGQGHLSSCETPGGQG 986
+ ++ L + F L R ++ +
Sbjct: 238 LKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQ----------VTDFLSAATTT 287
Query: 987 HLSFSETPGGQGHLTGNQSSLLMGPHFEIDPKTYRGIKAC-VWPGRVQVIRKNNFKYFLD 1045
H+S LT ++ L+ + + P+ + P R+ +I
Sbjct: 288 HISLDHHSMT---LTPDEVKSLLLKYLDCRPQDLP-REVLTTNPRRLSII---------- 333
Query: 1046 GAHTTDSIELCAKW-FLRKSEAEANPTQSKSSNVIQRILVFNVTGERDPTKLLSPLLQSN 1104
D + A W + + K + +I+ L +L P
Sbjct: 334 AESIRDGL---ATWDNWKHVNCD------KLTTIIESSL-----------NVLEPAEYRK 373
Query: 1105 QFEYILVTP---NILTN--EIRWRGQPLDEDWKSTVQSINISLAIQLAYLWMFRMNKSAE 1159
F+ + V P +I T + W + + SL + +
Sbjct: 374 MFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEK-------------Q 420
Query: 1160 LKRNQSSLPMGPHFEIDPKT-------------YRGIKA-CVWPGRVQVIRKNNFKYF-- 1203
K + S+P + E+ K Y K +I +YF
Sbjct: 421 PKESTISIPSI-YLELKVKLENEYALHRSIVDHYNIPKTFDSD----DLIPPYLDQYFYS 475
Query: 1204 -----LDGAHTTDSIELCAKWFL------RKSEAEASSSRSVSS---------------C 1237
L + + L FL +K ++++ + S C
Sbjct: 476 HIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYIC 535
Query: 1238 PLDPT--------------------QSKSSNVIQRIL 1254
DP SK +++++ L
Sbjct: 536 DNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIAL 572
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 44.5 bits (104), Expect = 2e-04
Identities = 113/812 (13%), Positives = 198/812 (24%), Gaps = 293/812 (36%)
Query: 30 HHGGYKHGAVTPHASRSNKEIPQSYVDAIKQ---LNTLQSNIRTIRESKLRKDPVEMQAV 86
HH ++ G K+I + DA +Q ++I L K+ ++ +
Sbjct: 5 HHMDFETGEH----QYQYKDILSVFEDAFVDNFDCKDVQDMPKSI----LSKEEID-HII 55
Query: 87 QVDQVVQYLGHLNITLDDIKKLNVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLI 146
V L TL K + + E +LR + F SP
Sbjct: 56 MSKDAVSGTLRLFWTLLS------------KQEEMVQKFVEEVLRI---NYKFLMSPIKT 100
Query: 147 EVRERIKLNGEPISY--------DKFTKYFWTVYNALHAKRKHAEDMPAYFKFLTVMSFY 198
E R+ + I F KY + R+ ++
Sbjct: 101 EQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLEL------------- 147
Query: 199 VFVKEKPDAVIMEVGIGGRYDNTNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIM 258
+P ++ G+ G G T + D V + + M
Sbjct: 148 -----RPAKNVLIDGVLG-------------SGKTWVALD---VCLSYKVQCKM------ 180
Query: 259 KPNCIA-VTSANQRGPCKQILLETSRALNCVLLEAPSILNYRWRGQPLDEDWKSTV-QSI 316
I + N P ET +LE L Y+ +D +W S S
Sbjct: 181 -DFKIFWLNLKNCNSP------ET-------VLEMLQKLLYQ-----IDPNWTSRSDHSS 221
Query: 317 NISLAIQ-----LAYLWMFRMNKSAELKSVIDKFLAEMRVSSPNETPGGQGHLSSCETPG 371
NI L I L L + ++ L V+ V + ++
Sbjct: 222 NIKLRIHSIQAELRRLLKSKPYENCLL--VLLN------VQNAK-------AWNA----- 261
Query: 372 GQGHLSFSETPGGQGHLTGNQSSLLMGPHFEIDPKT-----YRGIKACVWPGRVQVIRKN 426
F + K ++ + + I +
Sbjct: 262 -----------------------------FNLSCKILLTTRFKQVTDFLSAATTTHISLD 292
Query: 427 NFKYFLDGAHTTDSIELCAKWF------LRKSEAEASSSRSVSSCP-------------L 467
+ + L K+ L + E ++ R +S
Sbjct: 293 HHS---MTLTPDEVKSLLLKYLDCRPQDLPR-EVLTTNPRRLSIIAESIRDGLATWDNWK 348
Query: 468 DPTQSKSSNVIQRILVFNVTGERDPTKLLSPLLQSNQFEYILVTPN----------ILTN 517
K + +I+ L +L P F+ + V P ++
Sbjct: 349 HVNCDKLTTIIESSL-----------NVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWF 397
Query: 518 ESSPDTQYGGNRTIDRFGVKLDSRTAAPNGGHEPGRPNVGQGGGGFQSRSGDNSIRSNAN 577
+ + KL + +P +S SI
Sbjct: 398 DVIKSD-------VMVVVNKLHKYSLVE------KQPK--------ESTISIPSI----- 431
Query: 578 PLSSVDCHNVNDQSNSFHKIATVASALSQRSKVVEFSSVLDTYNFKYGLDPSKE------ 631
+ N+ + H+ S++D YN D
Sbjct: 432 -YLELKVKLENEYA--LHR------------------SIVDHYNIPKTFDSDDLIPPYLD 470
Query: 632 -Y---HILVTGSLHLVGAFLNVLITPHASRSNKEIPQSYVDAIKQLNTLQSNIRTIRESK 687
Y HI HL H R ++D L+ K
Sbjct: 471 QYFYSHI----GHHLKNI-------EHPERMT-LFRMVFLD----FRFLE--------QK 506
Query: 688 LRKDPVEMQAVQVDQVVQYLGHLNITLDDIKKLNVIHISGTKGKGSTCAYCESILR-SHG 746
+R D A G + TL +K +I +IL
Sbjct: 507 IRHDSTAWNAS---------GSILNTLQQLKFYKP-YI--CDNDPKYERLVNAILDFLPK 554
Query: 747 FSTGFFSSPHLIEVRERIKLNGEPISYDKFTK 778
S + +R + E I + +
Sbjct: 555 IEENLICSKYTDLLRIALMAEDEAIFEEAHKQ 586
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1255 | |||
| 3nrs_A | 437 | Dihydrofolate:folylpolyglutamate synthetase; struc | 100.0 | |
| 2vos_A | 487 | Folylpolyglutamate synthase protein FOLC; ligase, | 100.0 | |
| 1jbw_A | 428 | Folylpolyglutamate synthase; FPGS folate AMPPCP te | 100.0 | |
| 1o5z_A | 442 | Folylpolyglutamate synthase/dihydrofolate synthas; | 100.0 | |
| 3nrs_A | 437 | Dihydrofolate:folylpolyglutamate synthetase; struc | 100.0 | |
| 1jbw_A | 428 | Folylpolyglutamate synthase; FPGS folate AMPPCP te | 100.0 | |
| 2vos_A | 487 | Folylpolyglutamate synthase protein FOLC; ligase, | 100.0 | |
| 1o5z_A | 442 | Folylpolyglutamate synthase/dihydrofolate synthas; | 100.0 | |
| 1w78_A | 422 | FOLC bifunctional protein; DHFS, dihydrofolate syn | 100.0 | |
| 1w78_A | 422 | FOLC bifunctional protein; DHFS, dihydrofolate syn | 100.0 | |
| 1e8c_A | 498 | UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diami | 100.0 | |
| 2wtz_A | 535 | UDP-N-acetylmuramoyl-L-alanyl-D-glutamate- -2,6-di | 100.0 | |
| 1e8c_A | 498 | UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diami | 100.0 | |
| 1gg4_A | 452 | UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diamino | 100.0 | |
| 2wtz_A | 535 | UDP-N-acetylmuramoyl-L-alanyl-D-glutamate- -2,6-di | 100.0 | |
| 2am1_A | 454 | SP protein, UDP-N-acetylmuramoylalanine-D-glutamyl | 100.0 | |
| 1gg4_A | 452 | UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diamino | 100.0 | |
| 2am1_A | 454 | SP protein, UDP-N-acetylmuramoylalanine-D-glutamyl | 100.0 | |
| 1p3d_A | 475 | UDP-N-acetylmuramate--alanine ligase; alpha/beta p | 100.0 | |
| 2f00_A | 491 | UDP-N-acetylmuramate--L-alanine ligase; amide bond | 100.0 | |
| 1j6u_A | 469 | UDP-N-acetylmuramate-alanine ligase MURC; structur | 100.0 | |
| 2x5o_A | 439 | UDP-N-acetylmuramoylalanine--D-glutamate ligase; A | 100.0 | |
| 2x5o_A | 439 | UDP-N-acetylmuramoylalanine--D-glutamate ligase; A | 100.0 | |
| 1p3d_A | 475 | UDP-N-acetylmuramate--alanine ligase; alpha/beta p | 100.0 | |
| 2f00_A | 491 | UDP-N-acetylmuramate--L-alanine ligase; amide bond | 100.0 | |
| 1j6u_A | 469 | UDP-N-acetylmuramate-alanine ligase MURC; structur | 100.0 | |
| 4hv4_A | 494 | UDP-N-acetylmuramate--L-alanine ligase; MURC, yers | 100.0 | |
| 3lk7_A | 451 | UDP-N-acetylmuramoylalanine--D-glutamate ligase; a | 100.0 | |
| 3hn7_A | 524 | UDP-N-acetylmuramate-L-alanine ligase; ATP-binding | 100.0 | |
| 4hv4_A | 494 | UDP-N-acetylmuramate--L-alanine ligase; MURC, yers | 100.0 | |
| 3hn7_A | 524 | UDP-N-acetylmuramate-L-alanine ligase; ATP-binding | 100.0 | |
| 3lk7_A | 451 | UDP-N-acetylmuramoylalanine--D-glutamate ligase; a | 100.0 | |
| 3eag_A | 326 | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME | 99.92 | |
| 3eag_A | 326 | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME | 99.91 | |
| 3mvn_A | 163 | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamayl-M | 99.36 | |
| 3mvn_A | 163 | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamayl-M | 99.24 | |
| 4dzz_A | 206 | Plasmid partitioning protein PARF; deviant walker | 90.55 | |
| 3fwy_A | 314 | Light-independent protochlorophyllide reductase I | 88.33 | |
| 3fwy_A | 314 | Light-independent protochlorophyllide reductase I | 88.27 | |
| 2obn_A | 349 | Hypothetical protein; structural genomics, joint c | 86.44 | |
| 1hyq_A | 263 | MIND, cell division inhibitor (MIND-1); MINC, FTSZ | 85.76 | |
| 2obn_A | 349 | Hypothetical protein; structural genomics, joint c | 84.17 | |
| 1byi_A | 224 | Dethiobiotin synthase; biotin synthesis, cyclo-lig | 83.86 | |
| 1byi_A | 224 | Dethiobiotin synthase; biotin synthesis, cyclo-lig | 82.85 | |
| 3dm5_A | 443 | SRP54, signal recognition 54 kDa protein; protein- | 80.17 |
| >3nrs_A Dihydrofolate:folylpolyglutamate synthetase; structural genomics, center for structural genomics of infec diseases, csgid; HET: TLA MES; 1.80A {Yersinia pestis} PDB: 3n2a_A* 3pyz_A* 3qcz_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-66 Score=617.90 Aligned_cols=395 Identities=26% Similarity=0.378 Sum_probs=313.5
Q ss_pred CCCcHHHHHHHHHhcchhHHHHHhhhcCCCcccccccchHHHHHHHHHhcCCccCCCCccEEEEcCCCChhHHHHHHHHH
Q psy15432 50 IPQSYVDAIKQLNTLQSNIRTIRESKLRKDPVEMQAVQVDQVVQYLGHLNITLDDIKKLNVIHISGTKGKGSTCAYCESI 129 (1255)
Q Consensus 50 ~~~~y~eai~~L~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~Lg~~~~~~~~l~vIhVtGTnGKgST~a~l~sI 129 (1255)
...+|+|+++||.++... +. +++|++|+++|++||+|+ .++++|||||||||||||+|+++|
T Consensus 12 ~~~~~~~~l~~l~~~~~~----------~~-----~~gL~r~~~ll~~lg~p~---~~~~vI~VtGTNGKgSt~~~l~~i 73 (437)
T 3nrs_A 12 ATSPLAAWLCYLEHLHSQ----------PI-----ELGLERVKQVAERLDLLK---PAPKIFTVAGTNGKGTTCCTLEAI 73 (437)
T ss_dssp TTSCHHHHHHHHHTC----------------------CCHHHHHHHHHTTCSC---SSSEEEEEECSSSHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHhcCCC----------CC-----CCCHHHHHHHHHHcCCcc---ccCCEEEEECCcChHHHHHHHHHH
Confidence 346899999999987542 21 379999999999999997 678999999999999999999999
Q ss_pred HHHCCCCeEEEcCCcccccceeEEeCCeecChhhhhhHHHHHHHHHHhhhhccCCcchHHHHHHHHhhhhhhccCCCEEE
Q psy15432 130 LRSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTKYFWTVYNALHAKRKHAEDMPAYFKFLTVMSFYVFVKEKPDAVI 209 (1255)
Q Consensus 130 L~~~G~k~Gl~tSPhL~~~rERI~InG~~is~~~ft~~~~~v~~~l~~~~~~~~~~p~~Fe~Lt~~A~~~F~~~~vD~aV 209 (1255)
|+++|||||+||||||.++||||+|||++|+++.|++++.+|.+... ...||+||++|++||.+|.++++|++|
T Consensus 74 L~~~G~~vg~~tSphl~~~neri~i~g~~i~~~~~~~~~~~v~~~~~------~~~~T~fe~~t~~a~~~f~~~~~d~~V 147 (437)
T 3nrs_A 74 LLAAGLRVGVYSSPHLLRYTERVRIQGQELSEAEHSHSFAQIEAGRG------DISLTYFEFGTLSALQLFKQAKLDVVI 147 (437)
T ss_dssp HHHTTCCEEEECCCCSSCGGGGEEETTEECCHHHHHHHHHHHHHHHT------TCCCCHHHHHHHHHHHHHHHTCCSEEE
T ss_pred HHHCCCcEEEECCCCcCCcceEEEECCEECCHHHHHHHHHHHHHhhc------CCCCCHHHHHHHHHHHHHHhCCCCEEE
Confidence 99999999999999999999999999999999999999988876542 357999999999999999999999999
Q ss_pred EeeccCCccccccccCCccEEEEcCCCcchhhhcCCCHHHHHHHHHcccCCCceeeeccCCCchHHHHHHHhhhccCceE
Q psy15432 210 MEVGIGGRYDNTNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIMKPNCIAVTSANQRGPCKQILLETSRALNCVL 289 (1255)
Q Consensus 210 lEvG~GGr~D~tnii~~P~v~vITnIg~DHld~lG~Tle~Ia~~KagI~k~g~~~v~~~~q~~e~~~vl~~~a~~~~~~l 289 (1255)
||||+|||+|+||++ +|+++|||||+.||+++||+|+|+||++|++|||++.++|++. +++ ..++.+.+.+.++++
T Consensus 148 lEvGlggrld~tnii-~p~vaVITnI~~DHld~lG~t~e~ia~~Ka~I~~~~~~~V~~~-d~~--~~~~~~~a~~~~~~~ 223 (437)
T 3nrs_A 148 LEVGLGGRLDATNIV-DSDVAAITSIALDHTDWLGYDRESIGREKAGVFRGGKPAVVGE-PDM--PQSIADVAAELGAQL 223 (437)
T ss_dssp EECSSSSTTSGGGGS-CCSEEEECCCCCCBCCCTTCSHHHHHHHHGGGCCTTSEEEECC-SSC--CHHHHHHHHHHTCEE
T ss_pred EEcCCCCcccccccc-CCCEEEEcCccHHHHHHhCCcHHHHHHHHHhhccCCCeEEECC-ccH--HHHHHHHHHHcCCcE
Confidence 999999999999998 6999999999999999999999999999999999999999876 333 356777777777777
Q ss_pred EEcCCccee-------------------eecC---cccccCCCchhHHhhHHHHHHHHHHHHHhhccchhhhhHHHHhhh
Q psy15432 290 LEAPSILNY-------------------RWRG---QPLDEDWKSTVQSINISLAIQLAYLWMFRMNKSAELKSVIDKFLA 347 (1255)
Q Consensus 290 ~~~~~~~~~-------------------~~~~---~~i~l~l~G~~q~~Na~lAia~a~~~l~~~~~~~~~~~~~~~~~~ 347 (1255)
+.++...++ .+.+ ..+.++++| ||..|++.|++++..+
T Consensus 224 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~-~~~~Na~~Alaa~~~~------------------- 283 (437)
T 3nrs_A 224 YRRDVAWKFSQQEPFDQQEPVDQQINGWHWQCGERQLTGLPVPN-VPLANAATALAVLHYS------------------- 283 (437)
T ss_dssp EEBTTTEEEEC--------------CCEEEEETTEEEEEECCCS-SCHHHHHHHHHHHHHH-------------------
T ss_pred EEecccceeeecccccccccccccCceEEEecCCcceeccCCcc-hhHHHHHHHHHHHHHh-------------------
Confidence 766542211 1111 123456663 3444444444443332
Q ss_pred hhccCCCCCCCCCCCCCCccCCCCCCCCccccCCCCCCCCccccccccCCCCCCCChHHHHHHHhcCCCCCceEEEEecC
Q psy15432 348 EMRVSSPNETPGGQGHLSSCETPGGQGHLSFSETPGGQGHLTGNQSSLLMGPHFEIDPKTYRGIKACVWPGRVQVIRKNN 427 (1255)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~e~i~~gL~~~~~pGR~e~v~~~~ 427 (1255)
.+ +++ .++|++||++++||||||++..+
T Consensus 284 ----------------------------------------------~l----gi~-~~~i~~gL~~~~~pGR~e~v~~~- 311 (437)
T 3nrs_A 284 ----------------------------------------------EL----PLS-DEAIRQGLQAASLPGRFQVVSEQ- 311 (437)
T ss_dssp ----------------------------------------------TC----CCC-HHHHHHHHHHCCCTTSSEEEETT-
T ss_pred ----------------------------------------------CC----CCC-HHHHHHHHHhCCCCCceEEEecC-
Confidence 01 667 89999999999999999999865
Q ss_pred cEEEEccCCCHHHHHHHHHHHH------hhhhcccccCccCCCCCCCCCccCCCCCccEEEEEecCCCCChhhhhHHhhc
Q psy15432 428 FKYFLDGAHTTDSIELCAKWFL------RKSEAEASSSRSVSSCPLDPTQSKSSNVIQRILVFNVTGERDPTKLLSPLLQ 501 (1255)
Q Consensus 428 ~~vilDgAHnp~si~~~l~~l~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilVfg~~~drD~~~ll~~L~~ 501 (1255)
..+|+||||||+|+++++++++ +.... +++++|||+++|||+.+|++.+ +
T Consensus 312 ~~vi~D~AHNp~a~~all~~l~~~~~~~~~~~~-----------------------~r~i~V~G~~~dkd~~~~~~~l-~ 367 (437)
T 3nrs_A 312 PLLILDVAHNPHAARYLVNRLAQVINPVNASKQ-----------------------GKVRAVVGMLSDKDIAGTLACL-S 367 (437)
T ss_dssp TEEEECCCCSHHHHHHHHHHHHHTC-------------------------------CCEEEEECCBTTBCHHHHHHHH-T
T ss_pred CeEEEECCCCHHHHHHHHHHHHhhcchhhhcCC-----------------------CCEEEEEeCCCCCCHHHHHHHH-H
Confidence 4799999999999999999998 44221 2789999999999999999999 4
Q ss_pred cCCCcEEEEcC-CCCCCCCCCCCcCCCCcccccccccccccCCCCCCCCCCCCCCCCCCCCCcccCCCCCcccCCCCCCC
Q psy15432 502 SNQFEYILVTP-NILTNESSPDTQYGGNRTIDRFGVKLDSRTAAPNGGHEPGRPNVGQGGGGFQSRSGDNSIRSNANPLS 580 (1255)
Q Consensus 502 ~~~~d~vi~t~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 580 (1255)
..+|.+++++ ++++.+++
T Consensus 368 -~~~~~v~~~~~~~~r~~~~------------------------------------------------------------ 386 (437)
T 3nrs_A 368 -ERVDEWYCAPLEGPRGASA------------------------------------------------------------ 386 (437)
T ss_dssp -TTCCEEEECCCSSTTBCCH------------------------------------------------------------
T ss_pred -hcCCEEEEeCCCCCCCCCH------------------------------------------------------------
Confidence 3577777765 34443221
Q ss_pred cccccccccccchhhHHHHHHhhccCCCcEEEcCCHHHHHHHHhccCCCCCceEEEecccccccccceee
Q psy15432 581 SVDCHNVNDQSNSFHKIATVASALSQRSKVVEFSSVLDTYNFKYGLDPSKEYHILVTGSLHLVGAFLNVL 650 (1255)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~si~~ai~~~~~~~~~~~~~vlvtGSlhLVGgvL~~l 650 (1255)
..|++ .+... ..++|+++|++.+.... .+++.|||+||+|++|.++..+
T Consensus 387 --------------~~l~~---~~~~~---~~~~d~~~Ai~~a~~~a-~~~D~VLv~GS~~~v~~~~~~~ 435 (437)
T 3nrs_A 387 --------------GQLAE---HLVSA---RQFSDVETAWRQAMQDA-DTQDVVIVCGSFHTVAHVMAAL 435 (437)
T ss_dssp --------------HHHHT---TCSSC---EECSSHHHHHHHHHHHC-CTTCEEEEESSHHHHHHHHHHT
T ss_pred --------------HHHHH---HHhhC---CCcCCHHHHHHHHHHhc-CCCCeEEEEehHHHHHHHHHHh
Confidence 01111 11111 46889999999999876 4678899999999999987544
|
| >2vos_A Folylpolyglutamate synthase protein FOLC; ligase, peptidoglycan synthesis, cell division; HET: ADP; 2.0A {Mycobacterium tuberculosis} PDB: 2vor_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-65 Score=615.38 Aligned_cols=416 Identities=24% Similarity=0.330 Sum_probs=334.1
Q ss_pred CcHHHHHHHHHhcchhHHHHHhhhcCCCcccccccchHHHHHHHHHhcCCccCCCCccEEEEcCCCChhHHHHHHHHHHH
Q psy15432 52 QSYVDAIKQLNTLQSNIRTIRESKLRKDPVEMQAVQVDQVVQYLGHLNITLDDIKKLNVIHISGTKGKGSTCAYCESILR 131 (1255)
Q Consensus 52 ~~y~eai~~L~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~Lg~~~~~~~~l~vIhVtGTnGKgST~a~l~sIL~ 131 (1255)
.+|+++++||.++... .+. .++|++|+.+++.||+|+ .++++|||||||||||||+||++||+
T Consensus 25 ~~~~~~~~~l~~~~~~---------~~~-----~~~L~r~~~ll~~lg~p~---~~~~vI~VtGTNGKtST~~~l~~iL~ 87 (487)
T 2vos_A 25 ASLLQVEHLLDQRWPE---------TRI-----DPSLTRISALMDLLGSPQ---RSYPSIHIAGTNGKTSVARMVDALVT 87 (487)
T ss_dssp HHHHHHHHHHTTTC------------CC-----CTTCHHHHHHHHHTTCGG---GSSCEEEEECSSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCcc---------cCC-----CCCHHHHHHHHHHcCCch---hcCeEEEEeCCCCcHHHHHHHHHHHH
Confidence 4699999999875321 111 269999999999999998 56789999999999999999999999
Q ss_pred HCCCCeEEEcCCcccccceeEEeCCeecChhhhhhHHHHHHHHHHhhhh-------ccCCcchHHHHHHHHhhhhhhccC
Q psy15432 132 SHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTKYFWTVYNALHAKRK-------HAEDMPAYFKFLTVMSFYVFVKEK 204 (1255)
Q Consensus 132 ~~G~k~Gl~tSPhL~~~rERI~InG~~is~~~ft~~~~~v~~~l~~~~~-------~~~~~p~~Fe~Lt~~A~~~F~~~~ 204 (1255)
++|++||+|||||+.++||||+|||++|+++.|..++.++.+..+.... ..+..+++|+++|+|||.+|.+++
T Consensus 88 ~~G~~vG~~tSp~l~~~~eri~i~G~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~fe~~t~~a~~~f~~~~ 167 (487)
T 2vos_A 88 ALHRRTGRTTSPHLQSPVERISIDGKPISPAQYVATYREIEPLVALIDQQSQASAGKGGPAMSKFEVLTAMAFAAFADAP 167 (487)
T ss_dssp HTTCCEEEECSSCSSCGGGGEEETTEECCHHHHHHHHHHHHHHHHHHHHHHHHC-----CCCCHHHHHHHHHHHHHHHTT
T ss_pred HcCCCeEEECCCCcCcccceEEECCEECCHHHHHHHHHHHHHHHhhhhhccccccccCCCCCCHHHHHHHHHHHHHHhCC
Confidence 9999999999999999999999999999999999999999887765421 124568999999999999999999
Q ss_pred CCEEEEeeccCCccccccccCCccEEEEcCCCcchhhhcCCCHHHHHHHHHccc------CCCceeeeccCCCchHHHHH
Q psy15432 205 PDAVIMEVGIGGRYDNTNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIM------KPNCIAVTSANQRGPCKQIL 278 (1255)
Q Consensus 205 vD~aVlEvG~GGr~D~tnii~~P~v~vITnIg~DHld~lG~Tle~Ia~~KagI~------k~g~~~v~~~~q~~e~~~vl 278 (1255)
+|++|||||+||++|+||++ +|+++|||||++||+++||+|+++|+++|++|| |++.++|++. +++++.+++
T Consensus 168 ~d~~VlEvg~gg~~d~tn~i-~p~vaVITnI~~DHld~lG~t~e~ia~~Ka~i~~~~~~~k~~~~~V~~~-dd~~~~~~~ 245 (487)
T 2vos_A 168 VDVAVVEVGMGGRWDATNVI-NAPVAVITPISIDHVDYLGADIAGIAGEKAGIITRAPDGSPDTVAVIGR-QVPKVMEVL 245 (487)
T ss_dssp CSEEEEECSSSSTTSTTCSS-CCSEEEECCCCCCBCSCSSCCHHHHHHHHHTTCCCCC--CCCCEEEECC-CCHHHHHHH
T ss_pred CCEEEEEcCCCCcccccccc-CCCEEEECCcchhhhhhhCCcHHHHHHHHHHHhhcccccCCCCEEEEeC-CCHHHHHHH
Confidence 99999999999999999998 699999999999999999999999999999999 8899999988 778888888
Q ss_pred HHhhhccCceEEEcCCcc------------eeeecC-----cccccCCCchhHHhhHHHHHHHHHHHHHhhccchhhhhH
Q psy15432 279 LETSRALNCVLLEAPSIL------------NYRWRG-----QPLDEDWKSTVQSINISLAIQLAYLWMFRMNKSAELKSV 341 (1255)
Q Consensus 279 ~~~a~~~~~~l~~~~~~~------------~~~~~~-----~~i~l~l~G~~q~~Na~lAia~a~~~l~~~~~~~~~~~~ 341 (1255)
.+.+.+.+++++.++... .+.+.. ..+.++++|.||++|+++|++++..++..
T Consensus 246 ~~~a~~~~~~~~~~g~d~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~l~G~hn~~Na~aAiaa~~~l~~~---------- 315 (487)
T 2vos_A 246 LAESVRADASVAREDSEFAVLRRQIAVGGQVLQLQGLGGVYSDIYLPLHGEHQAHNAVLALASVEAFFGA---------- 315 (487)
T ss_dssp HHHHHHTTCEEEEBTTTBEEEEEEEETTEEEEEEEETTEEEEEEEECCCSHHHHHHHHHHHHHHHHHTTC----------
T ss_pred HHHHHHcCCeEEEecCceEEEeeccccCCceEEEecCCcccceeecCCCCHHHHHHHHHHHHHHHHHhhc----------
Confidence 888776666665554211 121211 14678999999999999999998775100
Q ss_pred HHHhhhhhccCCCCCCCCCCCCCCccCCCCCCCCccccCCCCCCCCccccccccCCCCCCCChHHHHHHHhcCCCCCceE
Q psy15432 342 IDKFLAEMRVSSPNETPGGQGHLSSCETPGGQGHLSFSETPGGQGHLTGNQSSLLMGPHFEIDPKTYRGIKACVWPGRVQ 421 (1255)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~e~i~~gL~~~~~pGR~e 421 (1255)
. ...+++ .+.|++||++++||||||
T Consensus 316 ----------------------------------------------------~--~~~gi~-~~~i~~gL~~~~~pGR~e 340 (487)
T 2vos_A 316 ----------------------------------------------------G--AQRQLD-GDAVRAGFAAVTSPGRLE 340 (487)
T ss_dssp ----------------------------------------------------------CCC-HHHHHHHHHTCCCTTSSE
T ss_pred ----------------------------------------------------c--ccCCCC-HHHHHHHHHhCcCCCceE
Confidence 0 001567 899999999999999999
Q ss_pred EEEecCcEEEEccCCCHHHHHHHHHHHHhhhhcccccCccCCCCCCCCCccCCCCCccEEEEEecCCCCChhhhhHHhhc
Q psy15432 422 VIRKNNFKYFLDGAHTTDSIELCAKWFLRKSEAEASSSRSVSSCPLDPTQSKSSNVIQRILVFNVTGERDPTKLLSPLLQ 501 (1255)
Q Consensus 422 ~v~~~~~~vilDgAHnp~si~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilVfg~~~drD~~~ll~~L~~ 501 (1255)
++..+ ..||+||||||+|+++++++++..... +++++|||+++|||.+.|++.+
T Consensus 341 ~v~~~-~~vi~D~AHNp~a~~a~l~~l~~~~~~-----------------------~~~i~V~G~~~dkd~~~~~~~l-- 394 (487)
T 2vos_A 341 RMRSA-PTVFIDAAHNPAGASALAQTLAHEFDF-----------------------RFLVGVLSVLGDKDVDGILAAL-- 394 (487)
T ss_dssp EEETT-TEEEECCCCSHHHHHHHHHHHHHSCCC-----------------------SEEEEEECCBTTBCHHHHHHHH--
T ss_pred EEcCC-CeEEEECCCCHHHHHHHHHHHHHhcCC-----------------------CCEEEEEEecCCCCHHHHHHHH--
Confidence 99764 589999999999999999999864321 2789999999999999999998
Q ss_pred cCCCcEEEEcCC-CCCCCCCCCCcCCCCcccccccccccccCCCCCCCCCCCCCCCCCCCCCcccCCCCCcccCCCCCCC
Q psy15432 502 SNQFEYILVTPN-ILTNESSPDTQYGGNRTIDRFGVKLDSRTAAPNGGHEPGRPNVGQGGGGFQSRSGDNSIRSNANPLS 580 (1255)
Q Consensus 502 ~~~~d~vi~t~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 580 (1255)
...+|.||+|+. +++.+++
T Consensus 395 ~~~~d~vilt~~~~~r~~~~------------------------------------------------------------ 414 (487)
T 2vos_A 395 EPVFDSVVVTHNGSPRALDV------------------------------------------------------------ 414 (487)
T ss_dssp TTTCSEEEECCCSCTTBCCH------------------------------------------------------------
T ss_pred HhhCCEEEEeCCCCcCCCCH------------------------------------------------------------
Confidence 346799999874 3332221
Q ss_pred cccccccccccchhhHHHHHHhhccCCCcEEEcCCHHHHHHHHhccCCC------------CCceEEEecccccccccce
Q psy15432 581 SVDCHNVNDQSNSFHKIATVASALSQRSKVVEFSSVLDTYNFKYGLDPS------------KEYHILVTGSLHLVGAFLN 648 (1255)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~si~~ai~~~~~~~~~------------~~~~vlvtGSlhLVGgvL~ 648 (1255)
..|++.+.+......+.+++|+++|++.+...... +++.||||||+||+|.++.
T Consensus 415 --------------~~l~~~~~~~~~~~~~~~~~~~~~Ai~~a~~~a~~~~~~~~~~~~~~~~d~vlv~GS~y~vg~~~~ 480 (487)
T 2vos_A 415 --------------EALALAAGERFGPDRVRTAENLRDAIDVATSLVDDAAADPDVAGDAFSRTGIVITGSVVTAGAART 480 (487)
T ss_dssp --------------HHHHHHHHHHHCGGGEEECSSHHHHHHHHHHHHHHHHTCTTTTC----CEEEEEESSHHHHHHHHH
T ss_pred --------------HHHHHHHHhhcCCCceEecCCHHHHHHHHHHhcccCcccccccccccCCCEEEEEeeHHHHHHHHH
Confidence 11333332211112477889999999988765411 1278999999999999876
Q ss_pred eec
Q psy15432 649 VLI 651 (1255)
Q Consensus 649 ~l~ 651 (1255)
++.
T Consensus 481 ~l~ 483 (487)
T 2vos_A 481 LFG 483 (487)
T ss_dssp HTT
T ss_pred hhh
Confidence 553
|
| >1jbw_A Folylpolyglutamate synthase; FPGS folate AMPPCP ternary complex, ligase; HET: KCX ACQ TMF; 1.85A {Lactobacillus casei} SCOP: c.59.1.2 c.72.2.2 PDB: 1fgs_A* 1jbv_A* 2gca_A 2gc5_A* 2gc6_A* 2gcb_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.9e-64 Score=593.81 Aligned_cols=403 Identities=22% Similarity=0.332 Sum_probs=327.6
Q ss_pred CcHHHHHHHHHhcchhHHHHHhhhcCCCcccccccchHHHHHHHHHhcCCccCCCCccEEEEcCCCChhHHHHHHHHHHH
Q psy15432 52 QSYVDAIKQLNTLQSNIRTIRESKLRKDPVEMQAVQVDQVVQYLGHLNITLDDIKKLNVIHISGTKGKGSTCAYCESILR 131 (1255)
Q Consensus 52 ~~y~eai~~L~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~Lg~~~~~~~~l~vIhVtGTnGKgST~a~l~sIL~ 131 (1255)
|+|+|+++||++++.. +. +++|++|+++|++||+|+ .++++|||||||||||||+|+++||+
T Consensus 1 ~~~~~~~~~l~~~~~~----------~~-----~~~l~~~~~~l~~lg~p~---~~~~vI~VtGTnGKtTT~~~l~~iL~ 62 (428)
T 1jbw_A 1 MNYTETVAYIHSFPRL----------AK-----TGDHRRILTLLHALGNPQ---QQGRYIHVTGTNGKGSAANAIAHVLE 62 (428)
T ss_dssp CCHHHHHHHHTTCCCC----------CC-----CSSCHHHHHHHHHTTCGG---GSSCEEEEECSSCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHhhccc----------CC-----CCCHHHHHHHHHHcCCch---hcCcEEEEECCCChHHHHHHHHHHHH
Confidence 6899999999987542 21 379999999999999998 56799999999999999999999999
Q ss_pred HCCCCeEEEcCCcccccceeEEeCCeecChhhhhhHHHHHHHHHHhhhhc-cCCcchHHHHHHHHhhhhhhccCCCEEEE
Q psy15432 132 SHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTKYFWTVYNALHAKRKH-AEDMPAYFKFLTVMSFYVFVKEKPDAVIM 210 (1255)
Q Consensus 132 ~~G~k~Gl~tSPhL~~~rERI~InG~~is~~~ft~~~~~v~~~l~~~~~~-~~~~p~~Fe~Lt~~A~~~F~~~~vD~aVl 210 (1255)
++|++||+|+|||+.+++|||+|||.+++++.|.++++++++..++.... +..++++|+++|++||.+|.++++|++||
T Consensus 63 ~~G~~vg~~~sp~l~~~~eri~i~g~~i~~~~~~~~~~~~~~~~~~ig~~~~~~~~t~~e~~t~~a~~~f~~~~~d~~Vl 142 (428)
T 1jbw_A 63 ASGLTVGLYTSPFIMRFNERIMIDHEPIPDAALVNAVAFVRAALERLQQQQADFNVTEFEFITALAYWYFRQRQVDVAVI 142 (428)
T ss_dssp HTTCCEEEECSSCSSCGGGGEEETTEECCHHHHHHHHHHHHHHHHHHHHHSTTCCCCHHHHHHHHHHHHHHHTTCSEEEE
T ss_pred HCCCCEEEEeCCccCccceEEEECCEECCHHHHHHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHHHHhCCCCEEEE
Confidence 99999999999999999999999999999999999999998887654311 22468999999999999999999999999
Q ss_pred eeccCCccccccccCCccEEEEcCCCcchhhhcCCCHHHHHHHHHcccCCCceeeeccCCCchHHHHHHHhhhccCceEE
Q psy15432 211 EVGIGGRYDNTNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIMKPNCIAVTSANQRGPCKQILLETSRALNCVLL 290 (1255)
Q Consensus 211 EvG~GGr~D~tnii~~P~v~vITnIg~DHld~lG~Tle~Ia~~KagI~k~g~~~v~~~~q~~e~~~vl~~~a~~~~~~l~ 290 (1255)
|||+|||+|+||++ +|+++|||||+.||+++||+|+|+|+++|++||+++.++|++. +++++.+++.+.+.+.+++++
T Consensus 143 Evg~~g~~d~t~~~-~p~vaviTnI~~DHld~~g~t~e~ia~~K~~i~~~~~~~v~~~-dd~~~~~~~~~~a~~~~~~~~ 220 (428)
T 1jbw_A 143 EVGIGGDTDSTNVI-TPVVSVLTEVALDHQKLLGHTITAIAKHKAGIIKRGIPVVTGN-LVPDAAAVVAAKVATTGSQWL 220 (428)
T ss_dssp ECSSSSTTSTTCSC-CCSEEEECCCCSCCHHHHCSSHHHHHHHHGGGCCTTCCEEECC-CCHHHHHHHHHHHHHHTCCEE
T ss_pred ecCCCccccccccC-CCCEEEECcCcHhhhhhhCCCHHHHHHHHhccccCCceEEEeC-CCHHHHHHHHHHHHHcCCcEE
Confidence 99999999999999 6999999999999999999999999999999999999999987 777788888777765555555
Q ss_pred EcCCc------------ceeeecC----c-ccccCCCchhHHhhHHHHHHHHHHHHHhhccchhhhhHHHHhhhhhccCC
Q psy15432 291 EAPSI------------LNYRWRG----Q-PLDEDWKSTVQSINISLAIQLAYLWMFRMNKSAELKSVIDKFLAEMRVSS 353 (1255)
Q Consensus 291 ~~~~~------------~~~~~~~----~-~i~l~l~G~~q~~Na~lAia~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 353 (1255)
.++.. ..+.+.. . .+.++++|.||++|+++|++++..+....
T Consensus 221 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~hn~~Na~aAia~~~~l~g~~--------------------- 279 (428)
T 1jbw_A 221 RFDRDFSVPKAKLHGWGQRFTYEDQDGRISDLEVPLVGDYQQRNMAIAIQTAKVYAKQT--------------------- 279 (428)
T ss_dssp EBTTTEEEEEEEECSSSEEEEEEETTEEEEEEEESCCSTHHHHHHHHHHHHHHHHHHHT---------------------
T ss_pred EeCccceeeccccccCCceEEEecCCccccccccCCCChhHHHHHHHHHHHHHHHhhcc---------------------
Confidence 54321 1122211 1 46789999999999999999987752110
Q ss_pred CCCCCCCCCCCCccCCCCCCCCccccCCCCCCCCccccccccCCCCCCCChHHHHHHHhcCCCCCceEEEEecCcEEEEc
Q psy15432 354 PNETPGGQGHLSSCETPGGQGHLSFSETPGGQGHLTGNQSSLLMGPHFEIDPKTYRGIKACVWPGRVQVIRKNNFKYFLD 433 (1255)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~e~i~~gL~~~~~pGR~e~v~~~~~~vilD 433 (1255)
...++ ++.|.+||++++||||||++..+ ..+|+|
T Consensus 280 --------------------------------------------~~~i~-~~~i~~~L~~~~~~gR~e~~~~~-~~viiD 313 (428)
T 1jbw_A 280 --------------------------------------------EWPLT-PQNIRQGLAASHWPARLEKISDT-PLIVID 313 (428)
T ss_dssp --------------------------------------------TCCCC-HHHHHHHHHTCCCTTSSEEEETT-TTEEEE
T ss_pred --------------------------------------------CCCCC-HHHHHHHHHhCcCCCceEEecCC-CcEEEE
Confidence 00356 89999999999999999999864 468999
Q ss_pred cCCCHHHHHHHHHHHHhhhhcccccCccCCCCCCCCCccCCCCCccEEEEEecCCCCChhhhhHHhhccCCCcEEEE-cC
Q psy15432 434 GAHTTDSIELCAKWFLRKSEAEASSSRSVSSCPLDPTQSKSSNVIQRILVFNVTGERDPTKLLSPLLQSNQFEYILV-TP 512 (1255)
Q Consensus 434 gAHnp~si~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilVfg~~~drD~~~ll~~L~~~~~~d~vi~-t~ 512 (1255)
|||||+|++++++++++... + ++++|||++++||+.++++.+ . ..+|.+|+ ++
T Consensus 314 ~AhNp~s~~a~l~~l~~~~~-~-----------------------~~i~V~g~~~~kd~~~~~~~~-~-~~~d~vi~~~~ 367 (428)
T 1jbw_A 314 GAHNPDGINGLITALKQLFS-Q-----------------------PITVIAGILADKDYAAMADRL-T-AAFSTVYLVPV 367 (428)
T ss_dssp CCCSHHHHHHHHHHHHHHCS-S-----------------------CCEEEEECSSSTTHHHHHHHH-H-HHCSEEEECCC
T ss_pred CCcCHHHHHHHHHHHHHhcC-C-----------------------CEEEEEeeCCCCCHHHHHHHH-h-hhCCEEEEECC
Confidence 99999999999999986532 1 689999999999999999988 3 34899998 65
Q ss_pred -CCCCCCCCCCCcCCCCcccccccccccccCCCCCCCCCCCCCCCCCCCCCcccCCCCCcccCCCCCCCccccccccccc
Q psy15432 513 -NILTNESSPDTQYGGNRTIDRFGVKLDSRTAAPNGGHEPGRPNVGQGGGGFQSRSGDNSIRSNANPLSSVDCHNVNDQS 591 (1255)
Q Consensus 513 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 591 (1255)
++++.+++. +
T Consensus 368 ~~~~r~~~~~--------------------------------------------------------------------~- 378 (428)
T 1jbw_A 368 PGTPRALPEA--------------------------------------------------------------------G- 378 (428)
T ss_dssp SCC-----------------------------------------------------------------------------
T ss_pred CCCCCCCCHH--------------------------------------------------------------------H-
Confidence 444432210 0
Q ss_pred chhhHHHHHHhhccCCCcEEEcCCHHHHHHHHhccCCCCCceEEEecccccccccceee
Q psy15432 592 NSFHKIATVASALSQRSKVVEFSSVLDTYNFKYGLDPSKEYHILVTGSLHLVGAFLNVL 650 (1255)
Q Consensus 592 ~~~~~~~~~~~~~~~~~~~~~~~si~~ai~~~~~~~~~~~~~vlvtGSlhLVGgvL~~l 650 (1255)
+++. . ++..++|+++|++.+.... +++.|||+||+++++.++..+
T Consensus 379 -----l~~~-~------~~~~~~~~~~ai~~a~~~~--~~d~vLv~GS~~~~~~~~~~l 423 (428)
T 1jbw_A 379 -----YEAL-H------EGRLKDSWQEALAASLNDV--PDQPIVITGSLYLASAVRQTL 423 (428)
T ss_dssp -------------------CBCSSHHHHHHHHHHHC--TTSCEEEEESHHHHHHHHHHH
T ss_pred -----HHhh-h------CCeecCCHHHHHHHHHhhC--CCCeEEEEeeHHHHHHHHHHH
Confidence 1100 0 1335689999999887765 567899999999999876544
|
| >1o5z_A Folylpolyglutamate synthase/dihydrofolate synthas; TM0166, structural genomics, JC protein structure initiative; 2.10A {Thermotoga maritima} SCOP: c.59.1.2 c.72.2.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-63 Score=594.30 Aligned_cols=346 Identities=27% Similarity=0.403 Sum_probs=290.3
Q ss_pred CCcHHHHHHHHHhcchhHHHHHhhhcCCCcccccccchHHHHHHHHHhcCCccCCCCccEEEEcCCCChhHHHHHHHHHH
Q psy15432 51 PQSYVDAIKQLNTLQSNIRTIRESKLRKDPVEMQAVQVDQVVQYLGHLNITLDDIKKLNVIHISGTKGKGSTCAYCESIL 130 (1255)
Q Consensus 51 ~~~y~eai~~L~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~Lg~~~~~~~~l~vIhVtGTnGKgST~a~l~sIL 130 (1255)
.|.|+++++||+++... + +.+++|++|+++|++||+|. .++++|||||||||||||+|+++||
T Consensus 12 ~~~~~~~~~~l~~~~~~----------~----~~~~gl~~~~~~l~~lg~p~---~~~~vI~VTGTnGKtTT~~~l~~iL 74 (442)
T 1o5z_A 12 HMAYLEVLRYLYHKRPM----------G----KVKPGLERISMLLSKLGNPH---LEYKTIHIGGTNGKGSVANMVSNIL 74 (442)
T ss_dssp HHHHHHHHHHHHTC-------------------CCCCSHHHHHHHHHTTCGG---GSSEEEEEECSSSHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHhhCcC----------C----CCCCCHHHHHHHHHHcCCch---hcCCEEEEECCcCHHHHHHHHHHHH
Confidence 58899999999986431 1 01279999999999999998 4679999999999999999999999
Q ss_pred HHCCCCeEEEcCCcccccceeEEeCCeecChhhhhhHHHHHHHHHHhhhhccCCcchHHHHHHHHhhhhhhccCCCEEEE
Q psy15432 131 RSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTKYFWTVYNALHAKRKHAEDMPAYFKFLTVMSFYVFVKEKPDAVIM 210 (1255)
Q Consensus 131 ~~~G~k~Gl~tSPhL~~~rERI~InG~~is~~~ft~~~~~v~~~l~~~~~~~~~~p~~Fe~Lt~~A~~~F~~~~vD~aVl 210 (1255)
+++|++||+|+|||+.++||||+|||.+++++.|..+++++++..+........+|++|+++|++||.+|.++++|++||
T Consensus 75 ~~~G~~vg~~~Sphl~~~neri~inG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~T~~e~~t~~a~~~f~~~~~d~~Vl 154 (442)
T 1o5z_A 75 VSQGYRVGSYYSPHLSTFRERIRLNEEYISEEDVVKIYETMEPILNELDKEEIFSPSFFEVVTAMAFLYFAEKNVDIAVL 154 (442)
T ss_dssp HHHTCCEEEECCSCSSCGGGGEEETTEECCHHHHHHHHHHHHHHHHHHTTSTTTCCCHHHHHHHHHHHHHHHTTCSEEEE
T ss_pred HHCCCCEEEECCCCcCccceeEEECCEECCHHHHHHHHHHHHHHHhhhcccccCCCCHHHHHHHHHHHHHHhcCCCEEEE
Confidence 99999999999999999999999999999999999999999988776654344679999999999999999999999999
Q ss_pred eeccCCccccccccCCccEEEEcCCCcchhhhcCCCHHHHHHHHHcccCCCceeeeccCCCchHHHHHHHhhhccCceEE
Q psy15432 211 EVGIGGRYDNTNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIMKPNCIAVTSANQRGPCKQILLETSRALNCVLL 290 (1255)
Q Consensus 211 EvG~GGr~D~tnii~~P~v~vITnIg~DHld~lG~Tle~Ia~~KagI~k~g~~~v~~~~q~~e~~~vl~~~a~~~~~~l~ 290 (1255)
|||+|||+|+||++ +|+++|||||+.||+++||+|+|+|+++|++||+++.++|++. +++++.+++.+.|.+.+++++
T Consensus 155 Evg~~g~~d~t~~~-~P~vaViTnI~~DHld~~G~t~e~ia~~K~~i~~~~~~~V~~~-dd~~~~~~~~~~a~~~~~~~~ 232 (442)
T 1o5z_A 155 EVGLGGRLDATNVV-FPLCSTIVTVDRDHEKTLGYTIEQIAWEKSGIIKERVPLVTGE-RKREALKVMEDVARKKSSRMY 232 (442)
T ss_dssp ECSSSSTTCGGGGC-CCSCEEECCCCC-------CCHHHHHHHHGGGCCTTCCEEECC-CCHHHHHHHHHHHHHHTCCEE
T ss_pred EcCCCCCccccccC-CCCEEEECCccHhhhhhhCcCHHHHHHHHHhhccCCccEEEcC-CChHHHHHHHHHHHHcCCcEE
Confidence 99999999999998 6999999999999999999999999999999999999999987 777888888777766555665
Q ss_pred EcCCcc------------eeeecC---c-ccccCCCchhHHhhHHHHHHHHH--HHHHhhccchhhhhHHHHhhhhhccC
Q psy15432 291 EAPSIL------------NYRWRG---Q-PLDEDWKSTVQSINISLAIQLAY--LWMFRMNKSAELKSVIDKFLAEMRVS 352 (1255)
Q Consensus 291 ~~~~~~------------~~~~~~---~-~i~l~l~G~~q~~Na~lAia~a~--~~l~~~~~~~~~~~~~~~~~~~~~~~ 352 (1255)
.++... .+.+.. . .+.++++|.||++|+++|++++. .+
T Consensus 233 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~hn~~NalaAia~~~~~~l------------------------ 288 (442)
T 1o5z_A 233 VIDKDFSVKVKSLKLHENRFDYCGENTFEDLVLTMNGPHQIENAGVALKTLEATGL------------------------ 288 (442)
T ss_dssp EBTTTBEEEEEECCTTCEEEEEESSSEEEEEEESSCSTHHHHHHHHHHHHHHHHCC------------------------
T ss_pred EeCcceeeeccccccCCceEEEeccccccccccCCCcHhHHHHHHHHHHHHHHhhc------------------------
Confidence 554210 111111 1 46789999999999999999886 43
Q ss_pred CCCCCCCCCCCCCccCCCCCCCCccccCCCCCCCCccccccccCCCCCCCChHHHHHHHhcCCCCCceEEEEecCcEEEE
Q psy15432 353 SPNETPGGQGHLSSCETPGGQGHLSFSETPGGQGHLTGNQSSLLMGPHFEIDPKTYRGIKACVWPGRVQVIRKNNFKYFL 432 (1255)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~e~i~~gL~~~~~pGR~e~v~~~~~~vil 432 (1255)
+++ ++.|.+||++++||||||++..++..+|+
T Consensus 289 -----------------------------------------------gi~-~~~i~~~L~~~~~~gR~e~~~~~~~~vii 320 (442)
T 1o5z_A 289 -----------------------------------------------PLS-EKAIREGLKNAKNLGRFEILEKNGKMYIL 320 (442)
T ss_dssp -----------------------------------------------CCC-HHHHHHHHHHCCCTTSSEEEEETTEEEEE
T ss_pred -----------------------------------------------CCC-HHHHHHHHHhCCCCCceEEEEcCCCeEEE
Confidence 567 89999999999999999999876467999
Q ss_pred ccCCCHHHHHHHHHHHHhhhhcccccCccCCCCCCCCCccCCCCCccEEEEEecCCCCChhhhhHHhhccCCCcEEEEcC
Q psy15432 433 DGAHTTDSIELCAKWFLRKSEAEASSSRSVSSCPLDPTQSKSSNVIQRILVFNVTGERDPTKLLSPLLQSNQFEYILVTP 512 (1255)
Q Consensus 433 DgAHnp~si~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilVfg~~~drD~~~ll~~L~~~~~~d~vi~t~ 512 (1255)
||||||+|++++++++++..+. +++++|||++++||+.++++.+ ...+|.+++++
T Consensus 321 D~AhNp~s~~~~l~~l~~~~~~-----------------------~~~i~V~g~~~dkd~~~~~~~l--~~~~d~vi~~~ 375 (442)
T 1o5z_A 321 DGAHNPHGAESLVRSLKLYFNG-----------------------EPLSLVIGILDDKNREDILRKY--TGIFERVIVTR 375 (442)
T ss_dssp CCCCSHHHHHHHHHHHHHHCTT-----------------------CCEEEEECCCTTSCHHHHHGGG--TTTCSEEEECC
T ss_pred ECCcCHHHHHHHHHHHHHhCCC-----------------------CCEEEEEecCCCCCHHHHHHHH--HhhCCEEEEEC
Confidence 9999999999999999875322 2789999999999999999888 34689888776
|
| >3nrs_A Dihydrofolate:folylpolyglutamate synthetase; structural genomics, center for structural genomics of infec diseases, csgid; HET: TLA MES; 1.80A {Yersinia pestis} PDB: 3n2a_A* 3pyz_A* 3qcz_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-63 Score=591.17 Aligned_cols=383 Identities=24% Similarity=0.327 Sum_probs=304.4
Q ss_pred ccHHHHHHHHHhcchhHHHHHHhhccCCcccccccchHHHHHHHHHhcCcccccccceEEEecCCCCCccHHHHHHHHHH
Q psy15432 664 QSYVDAIKQLNTLQSNIRTIRESKLRKDPVEMQAVQVDQVVQYLGHLNITLDDIKKLNVIHISGTKGKGSTCAYCESILR 743 (1255)
Q Consensus 664 ~~y~~a~~~L~~lqsn~~~l~~~~~~g~~~~~~~~~v~~~~~~L~~Lg~~~~~~~~l~vIhVTGTnGKgST~aml~sILr 743 (1255)
.+|+++++||.++... +.. ++|++|+++|++||+|+ .++++|||||||||||||+|+++||+
T Consensus 14 ~~~~~~l~~l~~~~~~----------~~~-----~gL~r~~~ll~~lg~p~---~~~~vI~VtGTNGKgSt~~~l~~iL~ 75 (437)
T 3nrs_A 14 SPLAAWLCYLEHLHSQ----------PIE-----LGLERVKQVAERLDLLK---PAPKIFTVAGTNGKGTTCCTLEAILL 75 (437)
T ss_dssp SCHHHHHHHHHTC----------------------CCHHHHHHHHHTTCSC---SSSEEEEEECSSSHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHhcCCC----------CCC-----CCHHHHHHHHHHcCCcc---ccCCEEEEECCcChHHHHHHHHHHHH
Confidence 5799999999987532 322 79999999999999997 67899999999999999999999999
Q ss_pred HCCCCeEEEcCcccccccceeeeCCeecChhhhhhHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHHhhhcCCCCEEEEe
Q psy15432 744 SHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTKYFWTVYNALHAKRKHAEDMPAYFKFLTVMSFYVFVKEKPDAVIME 823 (1255)
Q Consensus 744 ~~G~rtGl~tSPhL~~~~ERI~InG~pIs~~~f~~~~~~v~~~l~~~~~~~~~~pt~Fe~lT~mAf~~F~~~~vD~aVlE 823 (1255)
++|||||+||||||.++||||+|||++|+++.|...+.++.... ....|||||++|++||.+|.++++|++|||
T Consensus 76 ~~G~~vg~~tSphl~~~neri~i~g~~i~~~~~~~~~~~v~~~~------~~~~~T~fe~~t~~a~~~f~~~~~d~~VlE 149 (437)
T 3nrs_A 76 AAGLRVGVYSSPHLLRYTERVRIQGQELSEAEHSHSFAQIEAGR------GDISLTYFEFGTLSALQLFKQAKLDVVILE 149 (437)
T ss_dssp HTTCCEEEECCCCSSCGGGGEEETTEECCHHHHHHHHHHHHHHH------TTCCCCHHHHHHHHHHHHHHHTCCSEEEEE
T ss_pred HCCCcEEEECCCCcCCcceEEEECCEECCHHHHHHHHHHHHHhh------cCCCCCHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 99999999999999999999999999999999999998876543 245799999999999999999999999999
Q ss_pred cccCCccccccccCCCcEEEEcCCCchhhhhcCCCHHHHHHHHhccccCCceEEEccCCCChhHHHHHHHhhhcCCeEEE
Q psy15432 824 VGIGGRYDNTNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIMKPNCIAVTSANQRGPCKQILLETSRALNCVLLE 903 (1255)
Q Consensus 824 VG~GGr~D~TNvi~~P~VavITnIg~DHl~~LG~TleeIA~~KagI~K~g~~av~~~~qd~~~~~vl~~~A~~~~~~l~~ 903 (1255)
||+|||+|+||++ +|+++|||||++||+++||+|+|+||++|+||||+++++|++. +++ ..++.+.|++.+++++.
T Consensus 150 vGlggrld~tnii-~p~vaVITnI~~DHld~lG~t~e~ia~~Ka~I~~~~~~~V~~~-d~~--~~~~~~~a~~~~~~~~~ 225 (437)
T 3nrs_A 150 VGLGGRLDATNIV-DSDVAAITSIALDHTDWLGYDRESIGREKAGVFRGGKPAVVGE-PDM--PQSIADVAAELGAQLYR 225 (437)
T ss_dssp CSSSSTTSGGGGS-CCSEEEECCCCCCBCCCTTCSHHHHHHHHGGGCCTTSEEEECC-SSC--CHHHHHHHHHHTCEEEE
T ss_pred cCCCCcccccccc-CCCEEEEcCccHHHHHHhCCcHHHHHHHHHhhccCCCeEEECC-ccH--HHHHHHHHHHcCCcEEE
Confidence 9999999999999 6999999999999999999999999999999999999999986 332 35777888888888887
Q ss_pred cCCccce-------------------eccC---CccccCCCchhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHhhhh
Q psy15432 904 APSILNY-------------------RWRG---QPLDEDWKSTVQSINISLAIQLAYLWMFRMNKSAELKSVIDKFLAEM 961 (1255)
Q Consensus 904 ~~~~~~~-------------------~~~~---~~v~l~L~G~hq~~Na~lAiala~~~l~~~~~~~~~~~~~~~~~~~~ 961 (1255)
++....+ .+.+ ..+.++++| ||..|++.|++++..+
T Consensus 226 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~-~~~~Na~~Alaa~~~~--------------------- 283 (437)
T 3nrs_A 226 RDVAWKFSQQEPFDQQEPVDQQINGWHWQCGERQLTGLPVPN-VPLANAATALAVLHYS--------------------- 283 (437)
T ss_dssp BTTTEEEEC--------------CCEEEEETTEEEEEECCCS-SCHHHHHHHHHHHHHH---------------------
T ss_pred ecccceeeecccccccccccccCceEEEecCCcceeccCCcc-hhHHHHHHHHHHHHHh---------------------
Confidence 7642111 1111 124566774 4555555555444331
Q ss_pred hcCCCCCCCCCCCCCCcCCCCCCCCCccccCCCCCCCCcccccccccCCCCCCCC-HHHHHHHhcCCCCCcEEEEeecCc
Q psy15432 962 RVSSPNETPGGQGHLSSCETPGGQGHLSFSETPGGQGHLTGNQSSLLMGPHFEID-PKTYRGIKACVWPGRVQVIRKNNF 1040 (1255)
Q Consensus 962 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~i~-~~i~~gL~~~~~pGR~E~v~~~~~ 1040 (1255)
.++++ +.+.+||++++||||||++..+ .
T Consensus 284 --------------------------------------------------~lgi~~~~i~~gL~~~~~pGR~e~v~~~-~ 312 (437)
T 3nrs_A 284 --------------------------------------------------ELPLSDEAIRQGLQAASLPGRFQVVSEQ-P 312 (437)
T ss_dssp --------------------------------------------------TCCCCHHHHHHHHHHCCCTTSSEEEETT-T
T ss_pred --------------------------------------------------CCCCCHHHHHHHHHhCCCCCceEEEecC-C
Confidence 05677 6799999999999999999865 4
Q ss_pred EEEEEcCcCHHHHHHHHHHHH------hhhccccCCCcccCCCCCcEEEEEecCCCCChhhhhhhhhcCCCCcEEEEcC-
Q psy15432 1041 KYFLDGAHTTDSIELCAKWFL------RKSEAEANPTQSKSSNVIQRILVFNVTGERDPTKLLSPLLQSNQFEYILVTP- 1113 (1255)
Q Consensus 1041 ~vilDgAHNP~S~~a~l~~l~------~~~~~~~~~~~~~~~~~~~~vlVfg~~~drD~~~ll~~L~~~~~~d~vi~t~- 1113 (1255)
.+|+||||||+|+++++++++ ... +.+++++|||+++|||...+++.+ .+ .+|.+++++
T Consensus 313 ~vi~D~AHNp~a~~all~~l~~~~~~~~~~------------~~~r~i~V~G~~~dkd~~~~~~~l-~~-~~~~v~~~~~ 378 (437)
T 3nrs_A 313 LLILDVAHNPHAARYLVNRLAQVINPVNAS------------KQGKVRAVVGMLSDKDIAGTLACL-SE-RVDEWYCAPL 378 (437)
T ss_dssp EEEECCCCSHHHHHHHHHHHHHTC--------------------CCEEEEECCBTTBCHHHHHHHH-TT-TCCEEEECCC
T ss_pred eEEEECCCCHHHHHHHHHHHHhhcchhhhc------------CCCCEEEEEeCCCCCCHHHHHHHH-Hh-cCCEEEEeCC
Confidence 799999999999999999998 542 125789999999999999999999 44 567777765
Q ss_pred CCCcccccccCCCCCcccccccccccCCHHHHHHHHHHHcCCCceEEeecCCC
Q psy15432 1114 NILTNEIRWRGQPLDEDWKSTVQSINISLAIQLAYLWMFRMNKSAELKRNQSS 1166 (1255)
Q Consensus 1114 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 1166 (1255)
++++...... +...+... ....+.++.++.+.....+++++|++||..
T Consensus 379 ~~~r~~~~~~---l~~~~~~~--~~~~d~~~Ai~~a~~~a~~~D~VLv~GS~~ 426 (437)
T 3nrs_A 379 EGPRGASAGQ---LAEHLVSA--RQFSDVETAWRQAMQDADTQDVVIVCGSFH 426 (437)
T ss_dssp SSTTBCCHHH---HHTTCSSC--EECSSHHHHHHHHHHHCCTTCEEEEESSHH
T ss_pred CCCCCCCHHH---HHHHHhhC--CCcCCHHHHHHHHHHhcCCCCeEEEEehHH
Confidence 3443322110 00011111 345688999999988888999999999854
|
| >1jbw_A Folylpolyglutamate synthase; FPGS folate AMPPCP ternary complex, ligase; HET: KCX ACQ TMF; 1.85A {Lactobacillus casei} SCOP: c.59.1.2 c.72.2.2 PDB: 1fgs_A* 1jbv_A* 2gca_A 2gc5_A* 2gc6_A* 2gcb_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.6e-62 Score=576.31 Aligned_cols=394 Identities=21% Similarity=0.322 Sum_probs=320.9
Q ss_pred ccHHHHHHHHHhcchhHHHHHHhhccCCcccccccchHHHHHHHHHhcCcccccccceEEEecCCCCCccHHHHHHHHHH
Q psy15432 664 QSYVDAIKQLNTLQSNIRTIRESKLRKDPVEMQAVQVDQVVQYLGHLNITLDDIKKLNVIHISGTKGKGSTCAYCESILR 743 (1255)
Q Consensus 664 ~~y~~a~~~L~~lqsn~~~l~~~~~~g~~~~~~~~~v~~~~~~L~~Lg~~~~~~~~l~vIhVTGTnGKgST~aml~sILr 743 (1255)
|+|+++++||++++.+ +. .++|++|+++|++||+|+ .++++|||||||||||||+|+++||+
T Consensus 1 ~~~~~~~~~l~~~~~~----------~~-----~~~l~~~~~~l~~lg~p~---~~~~vI~VtGTnGKtTT~~~l~~iL~ 62 (428)
T 1jbw_A 1 MNYTETVAYIHSFPRL----------AK-----TGDHRRILTLLHALGNPQ---QQGRYIHVTGTNGKGSAANAIAHVLE 62 (428)
T ss_dssp CCHHHHHHHHTTCCCC----------CC-----CSSCHHHHHHHHHTTCGG---GSSCEEEEECSSCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHhhccc----------CC-----CCCHHHHHHHHHHcCCch---hcCcEEEEECCCChHHHHHHHHHHHH
Confidence 5799999999987532 32 279999999999999998 56799999999999999999999999
Q ss_pred HCCCCeEEEcCcccccccceeeeCCeecChhhhhhHHHHHHHHHHHHhhc-CCCCCcHHHHHHHHHHHhhhcCCCCEEEE
Q psy15432 744 SHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTKYFWTVYNALHAKRKH-AEDMPAYFKFLTVMSFYVFVKEKPDAVIM 822 (1255)
Q Consensus 744 ~~G~rtGl~tSPhL~~~~ERI~InG~pIs~~~f~~~~~~v~~~l~~~~~~-~~~~pt~Fe~lT~mAf~~F~~~~vD~aVl 822 (1255)
++|++||+|+|||+.++||||+|||.+++++.|..++.++++...+.... +..+|++||++|++||.+|.++++|++|+
T Consensus 63 ~~G~~vg~~~sp~l~~~~eri~i~g~~i~~~~~~~~~~~~~~~~~~ig~~~~~~~~t~~e~~t~~a~~~f~~~~~d~~Vl 142 (428)
T 1jbw_A 63 ASGLTVGLYTSPFIMRFNERIMIDHEPIPDAALVNAVAFVRAALERLQQQQADFNVTEFEFITALAYWYFRQRQVDVAVI 142 (428)
T ss_dssp HTTCCEEEECSSCSSCGGGGEEETTEECCHHHHHHHHHHHHHHHHHHHHHSTTCCCCHHHHHHHHHHHHHHHTTCSEEEE
T ss_pred HCCCCEEEEeCCccCccceEEEECCEECCHHHHHHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHHHHhCCCCEEEE
Confidence 99999999999999999999999999999999999999998887665311 23569999999999999999999999999
Q ss_pred ecccCCccccccccCCCcEEEEcCCCchhhhhcCCCHHHHHHHHhccccCCceEEEccCCCChhHHHHHHHhhhcCCeEE
Q psy15432 823 EVGIGGRYDNTNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIMKPNCIAVTSANQRGPCKQILLETSRALNCVLL 902 (1255)
Q Consensus 823 EVG~GGr~D~TNvi~~P~VavITnIg~DHl~~LG~TleeIA~~KagI~K~g~~av~~~~qd~~~~~vl~~~A~~~~~~l~ 902 (1255)
|||+||++|.||++ +|+++|||||++||+++||+|+|+||++|++||++++++|++. +++.+.+++.+.+.+.+++++
T Consensus 143 Evg~~g~~d~t~~~-~p~vaviTnI~~DHld~~g~t~e~ia~~K~~i~~~~~~~v~~~-dd~~~~~~~~~~a~~~~~~~~ 220 (428)
T 1jbw_A 143 EVGIGGDTDSTNVI-TPVVSVLTEVALDHQKLLGHTITAIAKHKAGIIKRGIPVVTGN-LVPDAAAVVAAKVATTGSQWL 220 (428)
T ss_dssp ECSSSSTTSTTCSC-CCSEEEECCCCSCCHHHHCSSHHHHHHHHGGGCCTTCCEEECC-CCHHHHHHHHHHHHHHTCCEE
T ss_pred ecCCCccccccccC-CCCEEEECcCcHhhhhhhCCCHHHHHHHHhccccCCceEEEeC-CCHHHHHHHHHHHHHcCCcEE
Confidence 99999999999999 6999999999999999999999999999999999999999998 667778888877776667776
Q ss_pred EcCCcc------------ceecc--C--C-ccccCCCchhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHhhhhhcCC
Q psy15432 903 EAPSIL------------NYRWR--G--Q-PLDEDWKSTVQSINISLAIQLAYLWMFRMNKSAELKSVIDKFLAEMRVSS 965 (1255)
Q Consensus 903 ~~~~~~------------~~~~~--~--~-~v~l~L~G~hq~~Na~lAiala~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 965 (1255)
.++... .+.+. + . .+.++++|.||++|+++|++++..+....
T Consensus 221 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~hn~~Na~aAia~~~~l~g~~--------------------- 279 (428)
T 1jbw_A 221 RFDRDFSVPKAKLHGWGQRFTYEDQDGRISDLEVPLVGDYQQRNMAIAIQTAKVYAKQT--------------------- 279 (428)
T ss_dssp EBTTTEEEEEEEECSSSEEEEEEETTEEEEEEEESCCSTHHHHHHHHHHHHHHHHHHHT---------------------
T ss_pred EeCccceeeccccccCCceEEEecCCccccccccCCCChhHHHHHHHHHHHHHHHhhcc---------------------
Confidence 665310 11111 1 1 46789999999999999999988741110
Q ss_pred CCCCCCCCCCCCcCCCCCCCCCccccCCCCCCCCcccccccccCCCCCCCC-HHHHHHHhcCCCCCcEEEEeecCcEEEE
Q psy15432 966 PNETPGGQGHLSSCETPGGQGHLSFSETPGGQGHLTGNQSSLLMGPHFEID-PKTYRGIKACVWPGRVQVIRKNNFKYFL 1044 (1255)
Q Consensus 966 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~i~-~~i~~gL~~~~~pGR~E~v~~~~~~vil 1044 (1255)
.+.++ +.+.+||++++||||||++..++ .+|+
T Consensus 280 ----------------------------------------------~~~i~~~~i~~~L~~~~~~gR~e~~~~~~-~vii 312 (428)
T 1jbw_A 280 ----------------------------------------------EWPLTPQNIRQGLAASHWPARLEKISDTP-LIVI 312 (428)
T ss_dssp ----------------------------------------------TCCCCHHHHHHHHHTCCCTTSSEEEETTT-TEEE
T ss_pred ----------------------------------------------CCCCCHHHHHHHHHhCcCCCceEEecCCC-cEEE
Confidence 02356 67999999999999999998654 5899
Q ss_pred EcCcCHHHHHHHHHHHHhhhccccCCCcccCCCCCcEEEEEecCCCCChhhhhhhhhcCCCCcEEEE-cC-CCCcccccc
Q psy15432 1045 DGAHTTDSIELCAKWFLRKSEAEANPTQSKSSNVIQRILVFNVTGERDPTKLLSPLLQSNQFEYILV-TP-NILTNEIRW 1122 (1255)
Q Consensus 1045 DgAHNP~S~~a~l~~l~~~~~~~~~~~~~~~~~~~~~vlVfg~~~drD~~~ll~~L~~~~~~d~vi~-t~-~~~~~~~~~ 1122 (1255)
||||||+|++++++++++.. + +++++|||++++||...+++.+ .+ .+|.+++ ++ ++++.....
T Consensus 313 D~AhNp~s~~a~l~~l~~~~------------~-~~~i~V~g~~~~kd~~~~~~~~-~~-~~d~vi~~~~~~~~r~~~~~ 377 (428)
T 1jbw_A 313 DGAHNPDGINGLITALKQLF------------S-QPITVIAGILADKDYAAMADRL-TA-AFSTVYLVPVPGTPRALPEA 377 (428)
T ss_dssp ECCCSHHHHHHHHHHHHHHC------------S-SCCEEEEECSSSTTHHHHHHHH-HH-HCSEEEECCCSCC-------
T ss_pred ECCcCHHHHHHHHHHHHHhc------------C-CCEEEEEeeCCCCCHHHHHHHH-hh-hCCEEEEECCCCCCCCCCHH
Confidence 99999999999999998643 1 4679999999999999999988 33 3898888 66 444333211
Q ss_pred cCCCCCcccccccccccCCHHHHHHHHHHHcCCCceEEeecCCCC
Q psy15432 1123 RGQPLDEDWKSTVQSINISLAIQLAYLWMFRMNKSAELKRNQSSL 1167 (1255)
Q Consensus 1123 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 1167 (1255)
. +... ....+..+.++.++.+.... +++++|++||..+
T Consensus 378 ~---l~~~---~~~~~~~~~~~ai~~a~~~~-~~d~vLv~GS~~~ 415 (428)
T 1jbw_A 378 G---YEAL---HEGRLKDSWQEALAASLNDV-PDQPIVITGSLYL 415 (428)
T ss_dssp --------------CBCSSHHHHHHHHHHHC-TTSCEEEEESHHH
T ss_pred H---HHhh---hCCeecCCHHHHHHHHHhhC-CCCeEEEEeeHHH
Confidence 0 0000 01234468888888888777 8899999999754
|
| >2vos_A Folylpolyglutamate synthase protein FOLC; ligase, peptidoglycan synthesis, cell division; HET: ADP; 2.0A {Mycobacterium tuberculosis} PDB: 2vor_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-61 Score=580.39 Aligned_cols=400 Identities=23% Similarity=0.294 Sum_probs=319.3
Q ss_pred ccHHHHHHHHHhcchhHHHHHHhhccCCcccccccchHHHHHHHHHhcCcccccccceEEEecCCCCCccHHHHHHHHHH
Q psy15432 664 QSYVDAIKQLNTLQSNIRTIRESKLRKDPVEMQAVQVDQVVQYLGHLNITLDDIKKLNVIHISGTKGKGSTCAYCESILR 743 (1255)
Q Consensus 664 ~~y~~a~~~L~~lqsn~~~l~~~~~~g~~~~~~~~~v~~~~~~L~~Lg~~~~~~~~l~vIhVTGTnGKgST~aml~sILr 743 (1255)
.+|+++++||.++.. ..+. .++|++|+.+|+++|+|+ .++++|||||||||||||+||++||+
T Consensus 25 ~~~~~~~~~l~~~~~---------~~~~-----~~~L~r~~~ll~~lg~p~---~~~~vI~VtGTNGKtST~~~l~~iL~ 87 (487)
T 2vos_A 25 ASLLQVEHLLDQRWP---------ETRI-----DPSLTRISALMDLLGSPQ---RSYPSIHIAGTNGKTSVARMVDALVT 87 (487)
T ss_dssp HHHHHHHHHHTTTC------------CC-----CTTCHHHHHHHHHTTCGG---GSSCEEEEECSSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCc---------ccCC-----CCCHHHHHHHHHHcCCch---hcCeEEEEeCCCCcHHHHHHHHHHHH
Confidence 368999999887531 1222 279999999999999998 56899999999999999999999999
Q ss_pred HCCCCeEEEcCcccccccceeeeCCeecChhhhhhHHHHHHHHHHHHhh-------cCCCCCcHHHHHHHHHHHhhhcCC
Q psy15432 744 SHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTKYFWTVYNALHAKRK-------HAEDMPAYFKFLTVMSFYVFVKEK 816 (1255)
Q Consensus 744 ~~G~rtGl~tSPhL~~~~ERI~InG~pIs~~~f~~~~~~v~~~l~~~~~-------~~~~~pt~Fe~lT~mAf~~F~~~~ 816 (1255)
++|++||+|+||||.++||||+|||++|+++.|..++.++.+..+.... ..+..+|+||++|+|||.+|.+++
T Consensus 88 ~~G~~vG~~tSp~l~~~~eri~i~G~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~fe~~t~~a~~~f~~~~ 167 (487)
T 2vos_A 88 ALHRRTGRTTSPHLQSPVERISIDGKPISPAQYVATYREIEPLVALIDQQSQASAGKGGPAMSKFEVLTAMAFAAFADAP 167 (487)
T ss_dssp HTTCCEEEECSSCSSCGGGGEEETTEECCHHHHHHHHHHHHHHHHHHHHHHHHC-----CCCCHHHHHHHHHHHHHHHTT
T ss_pred HcCCCeEEECCCCcCcccceEEECCEECCHHHHHHHHHHHHHHHhhhhhccccccccCCCCCCHHHHHHHHHHHHHHhCC
Confidence 9999999999999999999999999999999999999999887765431 124569999999999999999999
Q ss_pred CCEEEEecccCCccccccccCCCcEEEEcCCCchhhhhcCCCHHHHHHHHhccc------cCCceEEEccCCCChhHHHH
Q psy15432 817 PDAVIMEVGIGGRYDNTNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIM------KPNCIAVTSANQRGPCKQIL 890 (1255)
Q Consensus 817 vD~aVlEVG~GGr~D~TNvi~~P~VavITnIg~DHl~~LG~TleeIA~~KagI~------K~g~~av~~~~qd~~~~~vl 890 (1255)
+|++|||||+||++|+||++ +|+++|||||++||+++||+|+|+||++|++|| |+++++|++. +++++.+++
T Consensus 168 ~d~~VlEvg~gg~~d~tn~i-~p~vaVITnI~~DHld~lG~t~e~ia~~Ka~i~~~~~~~k~~~~~V~~~-dd~~~~~~~ 245 (487)
T 2vos_A 168 VDVAVVEVGMGGRWDATNVI-NAPVAVITPISIDHVDYLGADIAGIAGEKAGIITRAPDGSPDTVAVIGR-QVPKVMEVL 245 (487)
T ss_dssp CSEEEEECSSSSTTSTTCSS-CCSEEEECCCCCCBCSCSSCCHHHHHHHHHTTCCCCC--CCCCEEEECC-CCHHHHHHH
T ss_pred CCEEEEEcCCCCcccccccc-CCCEEEECCcchhhhhhhCCcHHHHHHHHHHHhhcccccCCCCEEEEeC-CCHHHHHHH
Confidence 99999999999999999999 699999999999999999999999999999999 8899999998 677788888
Q ss_pred HHHhhhcCCeEEEcCCcc------------ceecc--C---CccccCCCchhHHHHHHHHHHHHHHHHHhhcchhhhhhH
Q psy15432 891 LETSRALNCVLLEAPSIL------------NYRWR--G---QPLDEDWKSTVQSINISLAIQLAYLWMFRMNKSAELKSV 953 (1255)
Q Consensus 891 ~~~A~~~~~~l~~~~~~~------------~~~~~--~---~~v~l~L~G~hq~~Na~lAiala~~~l~~~~~~~~~~~~ 953 (1255)
.+.+.+.+++++.++... .+.+. + ..+.++++|.||++|+++|++++..+....
T Consensus 246 ~~~a~~~~~~~~~~g~d~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~l~G~hn~~Na~aAiaa~~~l~~~~--------- 316 (487)
T 2vos_A 246 LAESVRADASVAREDSEFAVLRRQIAVGGQVLQLQGLGGVYSDIYLPLHGEHQAHNAVLALASVEAFFGAG--------- 316 (487)
T ss_dssp HHHHHHTTCEEEEBTTTBEEEEEEEETTEEEEEEEETTEEEEEEEECCCSHHHHHHHHHHHHHHHHHTTC----------
T ss_pred HHHHHHcCCeEEEecCceEEEeeccccCCceEEEecCCcccceeecCCCCHHHHHHHHHHHHHHHHHhhcc---------
Confidence 888877777777665311 11111 1 146789999999999999999988631000
Q ss_pred HHHHhhhhhcCCCCCCCCCCCCCCcCCCCCCCCCccccCCCCCCCCcccccccccCCCCCCCC-HHHHHHHhcCCCCCcE
Q psy15432 954 IDKFLAEMRVSSPNETPGGQGHLSSCETPGGQGHLSFSETPGGQGHLTGNQSSLLMGPHFEID-PKTYRGIKACVWPGRV 1032 (1255)
Q Consensus 954 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~i~-~~i~~gL~~~~~pGR~ 1032 (1255)
..++++ +.|.+||++++|||||
T Consensus 317 ---------------------------------------------------------~~~gi~~~~i~~gL~~~~~pGR~ 339 (487)
T 2vos_A 317 ---------------------------------------------------------AQRQLDGDAVRAGFAAVTSPGRL 339 (487)
T ss_dssp ------------------------------------------------------------CCCHHHHHHHHHTCCCTTSS
T ss_pred ---------------------------------------------------------ccCCCCHHHHHHHHHhCcCCCce
Confidence 003577 6799999999999999
Q ss_pred EEEeecCcEEEEEcCcCHHHHHHHHHHHHhhhccccCCCcccCCCCCcEEEEEecCCCCChhhhhhhhhcCCCCcEEEEc
Q psy15432 1033 QVIRKNNFKYFLDGAHTTDSIELCAKWFLRKSEAEANPTQSKSSNVIQRILVFNVTGERDPTKLLSPLLQSNQFEYILVT 1112 (1255)
Q Consensus 1033 E~v~~~~~~vilDgAHNP~S~~a~l~~l~~~~~~~~~~~~~~~~~~~~~vlVfg~~~drD~~~ll~~L~~~~~~d~vi~t 1112 (1255)
|++..+ ..+|+||||||+|+++++++++... +.+++++|||+++|||.+.+++.+ . ..+|.+++|
T Consensus 340 e~v~~~-~~vi~D~AHNp~a~~a~l~~l~~~~------------~~~~~i~V~G~~~dkd~~~~~~~l-~-~~~d~vilt 404 (487)
T 2vos_A 340 ERMRSA-PTVFIDAAHNPAGASALAQTLAHEF------------DFRFLVGVLSVLGDKDVDGILAAL-E-PVFDSVVVT 404 (487)
T ss_dssp EEEETT-TEEEECCCCSHHHHHHHHHHHHHSC------------CCSEEEEEECCBTTBCHHHHHHHH-T-TTCSEEEEC
T ss_pred EEEcCC-CeEEEECCCCHHHHHHHHHHHHHhc------------CCCCEEEEEEecCCCCHHHHHHHH-H-hhCCEEEEe
Confidence 999864 5799999999999999999998632 124789999999999999999998 3 357999998
Q ss_pred CC-CCcccccccCCCCCccccc----ccccccCCHHHHHHHHHHHcCCC-------------ceEEeecCCC
Q psy15432 1113 PN-ILTNEIRWRGQPLDEDWKS----TVQSINISLAIQLAYLWMFRMNK-------------SAELKRNQSS 1166 (1255)
Q Consensus 1113 ~~-~~~~~~~~~~~~~~~~~~~----d~~~~~~~~~~~~~~~~~~~~~~-------------~~~l~~~~~~ 1166 (1255)
+. .++...... +...+.. .......+.++.++.+.....++ +++|++||..
T Consensus 405 ~~~~~r~~~~~~---l~~~~~~~~~~~~~~~~~~~~~Ai~~a~~~a~~~~~~~~~~~~~~~~d~vlv~GS~y 473 (487)
T 2vos_A 405 HNGSPRALDVEA---LALAAGERFGPDRVRTAENLRDAIDVATSLVDDAAADPDVAGDAFSRTGIVITGSVV 473 (487)
T ss_dssp CCSCTTBCCHHH---HHHHHHHHHCGGGEEECSSHHHHHHHHHHHHHHHHTCTTTTC----CEEEEEESSHH
T ss_pred CCCCcCCCCHHH---HHHHHHhhcCCCceEecCCHHHHHHHHHHhcccCcccccccccccCCCEEEEEeeHH
Confidence 74 343221110 0011111 11233457888887776655443 7899999843
|
| >1o5z_A Folylpolyglutamate synthase/dihydrofolate synthas; TM0166, structural genomics, JC protein structure initiative; 2.10A {Thermotoga maritima} SCOP: c.59.1.2 c.72.2.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-60 Score=566.78 Aligned_cols=391 Identities=25% Similarity=0.331 Sum_probs=310.4
Q ss_pred CCcccHHHHHHHHHhcchhHHHHHHhhccC-CcccccccchHHHHHHHHHhcCcccccccceEEEecCCCCCccHHHHHH
Q psy15432 661 EIPQSYVDAIKQLNTLQSNIRTIRESKLRK-DPVEMQAVQVDQVVQYLGHLNITLDDIKKLNVIHISGTKGKGSTCAYCE 739 (1255)
Q Consensus 661 ~~~~~y~~a~~~L~~lqsn~~~l~~~~~~g-~~~~~~~~~v~~~~~~L~~Lg~~~~~~~~l~vIhVTGTnGKgST~aml~ 739 (1255)
...|.|+++++||+++... + . .++|++|+++|++||+|+ .++++|||||||||||||+|++
T Consensus 10 ~~~~~~~~~~~~l~~~~~~----------~~~-----~~gl~~~~~~l~~lg~p~---~~~~vI~VTGTnGKtTT~~~l~ 71 (442)
T 1o5z_A 10 HHHMAYLEVLRYLYHKRPM----------GKV-----KPGLERISMLLSKLGNPH---LEYKTIHIGGTNGKGSVANMVS 71 (442)
T ss_dssp CCHHHHHHHHHHHHTC---------------C-----CCCSHHHHHHHHHTTCGG---GSSEEEEEECSSSHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHhhCcC----------CCC-----CCCHHHHHHHHHHcCCch---hcCCEEEEECCcCHHHHHHHHH
Confidence 4568999999999986432 2 2 279999999999999998 4679999999999999999999
Q ss_pred HHHHHCCCCeEEEcCcccccccceeeeCCeecChhhhhhHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHHhhhcCCCCE
Q psy15432 740 SILRSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTKYFWTVYNALHAKRKHAEDMPAYFKFLTVMSFYVFVKEKPDA 819 (1255)
Q Consensus 740 sILr~~G~rtGl~tSPhL~~~~ERI~InG~pIs~~~f~~~~~~v~~~l~~~~~~~~~~pt~Fe~lT~mAf~~F~~~~vD~ 819 (1255)
+||+++|++||+|+|||+.++||||+|||.|++++.|..++.++++..+........+||+||++|++||.+|.+.++|+
T Consensus 72 ~iL~~~G~~vg~~~Sphl~~~neri~inG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~T~~e~~t~~a~~~f~~~~~d~ 151 (442)
T 1o5z_A 72 NILVSQGYRVGSYYSPHLSTFRERIRLNEEYISEEDVVKIYETMEPILNELDKEEIFSPSFFEVVTAMAFLYFAEKNVDI 151 (442)
T ss_dssp HHHHHHTCCEEEECCSCSSCGGGGEEETTEECCHHHHHHHHHHHHHHHHHHTTSTTTCCCHHHHHHHHHHHHHHHTTCSE
T ss_pred HHHHHCCCCEEEECCCCcCccceeEEECCEECCHHHHHHHHHHHHHHHhhhcccccCCCCHHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999999999999999999999999999999999988877654445679999999999999999999999
Q ss_pred EEEecccCCccccccccCCCcEEEEcCCCchhhhhcCCCHHHHHHHHhccccCCceEEEccCCCChhHHHHHHHhhhcCC
Q psy15432 820 VIMEVGIGGRYDNTNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIMKPNCIAVTSANQRGPCKQILLETSRALNC 899 (1255)
Q Consensus 820 aVlEVG~GGr~D~TNvi~~P~VavITnIg~DHl~~LG~TleeIA~~KagI~K~g~~av~~~~qd~~~~~vl~~~A~~~~~ 899 (1255)
+|+|||+||++|.||++ +|+++|||||++||+++||+|+|+|+++|++||++++++|++. +++.+.+++.+.|.+.++
T Consensus 152 ~VlEvg~~g~~d~t~~~-~P~vaViTnI~~DHld~~G~t~e~ia~~K~~i~~~~~~~V~~~-dd~~~~~~~~~~a~~~~~ 229 (442)
T 1o5z_A 152 AVLEVGLGGRLDATNVV-FPLCSTIVTVDRDHEKTLGYTIEQIAWEKSGIIKERVPLVTGE-RKREALKVMEDVARKKSS 229 (442)
T ss_dssp EEEECSSSSTTCGGGGC-CCSCEEECCCCC-------CCHHHHHHHHGGGCCTTCCEEECC-CCHHHHHHHHHHHHHHTC
T ss_pred EEEEcCCCCCccccccC-CCCEEEECCccHhhhhhhCcCHHHHHHHHHhhccCCccEEEcC-CChHHHHHHHHHHHHcCC
Confidence 99999999999999998 6999999999999999999999999999999999999999998 667777888777776677
Q ss_pred eEEEcCCcc------------ceeccC---C-ccccCCCchhHHHHHHHHHHHHH--HHHHhhcchhhhhhHHHHHhhhh
Q psy15432 900 VLLEAPSIL------------NYRWRG---Q-PLDEDWKSTVQSINISLAIQLAY--LWMFRMNKSAELKSVIDKFLAEM 961 (1255)
Q Consensus 900 ~l~~~~~~~------------~~~~~~---~-~v~l~L~G~hq~~Na~lAiala~--~~l~~~~~~~~~~~~~~~~~~~~ 961 (1255)
+++.++... .+.+.. . .+.++++|.||++|+++|++++. .
T Consensus 230 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~hn~~NalaAia~~~~~~---------------------- 287 (442)
T 1o5z_A 230 RMYVIDKDFSVKVKSLKLHENRFDYCGENTFEDLVLTMNGPHQIENAGVALKTLEATG---------------------- 287 (442)
T ss_dssp CEEEBTTTBEEEEEECCTTCEEEEEESSSEEEEEEESSCSTHHHHHHHHHHHHHHHHC----------------------
T ss_pred cEEEeCcceeeeccccccCCceEEEeccccccccccCCCcHhHHHHHHHHHHHHHHhh----------------------
Confidence 777765311 011111 1 46789999999999999999877 4
Q ss_pred hcCCCCCCCCCCCCCCcCCCCCCCCCccccCCCCCCCCcccccccccCCCCCCCC-HHHHHHHhcCCCCCcEEEEeecCc
Q psy15432 962 RVSSPNETPGGQGHLSSCETPGGQGHLSFSETPGGQGHLTGNQSSLLMGPHFEID-PKTYRGIKACVWPGRVQVIRKNNF 1040 (1255)
Q Consensus 962 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~i~-~~i~~gL~~~~~pGR~E~v~~~~~ 1040 (1255)
+|++ +.+.+||+++.||||||++...+.
T Consensus 288 ---------------------------------------------------lgi~~~~i~~~L~~~~~~gR~e~~~~~~~ 316 (442)
T 1o5z_A 288 ---------------------------------------------------LPLSEKAIREGLKNAKNLGRFEILEKNGK 316 (442)
T ss_dssp ---------------------------------------------------CCCCHHHHHHHHHHCCCTTSSEEEEETTE
T ss_pred ---------------------------------------------------cCCCHHHHHHHHHhCCCCCceEEEEcCCC
Confidence 4666 679999999999999999987646
Q ss_pred EEEEEcCcCHHHHHHHHHHHHhhhccccCCCcccCCCCCcEEEEEecCCCCChhhhhhhhhcCCCCcEEEEcCC-CCccc
Q psy15432 1041 KYFLDGAHTTDSIELCAKWFLRKSEAEANPTQSKSSNVIQRILVFNVTGERDPTKLLSPLLQSNQFEYILVTPN-ILTNE 1119 (1255)
Q Consensus 1041 ~vilDgAHNP~S~~a~l~~l~~~~~~~~~~~~~~~~~~~~~vlVfg~~~drD~~~ll~~L~~~~~~d~vi~t~~-~~~~~ 1119 (1255)
.+++||||||+|+++++++++.... .+++++|||+++|||...+++.+ . ..+|.+++++. .++..
T Consensus 317 ~viiD~AhNp~s~~~~l~~l~~~~~------------~~~~i~V~g~~~dkd~~~~~~~l-~-~~~d~vi~~~~~~~r~~ 382 (442)
T 1o5z_A 317 MYILDGAHNPHGAESLVRSLKLYFN------------GEPLSLVIGILDDKNREDILRKY-T-GIFERVIVTRVPSPRMK 382 (442)
T ss_dssp EEEECCCCSHHHHHHHHHHHHHHCT------------TCCEEEEECCCTTSCHHHHHGGG-T-TTCSEEEECCCSSTTCC
T ss_pred eEEEECCcCHHHHHHHHHHHHHhCC------------CCCEEEEEecCCCCCHHHHHHHH-H-hhCCEEEEECCCCCCCC
Confidence 7999999999999999999986431 14689999999999999999888 3 35898877763 33322
Q ss_pred ccccCCCCCccccc--ccccccCCHHHHHHHHHHHcCCCceEEeecCCCC
Q psy15432 1120 IRWRGQPLDEDWKS--TVQSINISLAIQLAYLWMFRMNKSAELKRNQSSL 1167 (1255)
Q Consensus 1120 ~~~~~~~~~~~~~~--d~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 1167 (1255)
.... +...+.. .......+.++.++.+ ++++|++||..+
T Consensus 383 ~~~~---i~~~~~~~~~~~~~~~~~~~Ai~~a------~d~VLv~GS~~~ 423 (442)
T 1o5z_A 383 DMNS---LVDMAKKFFKNVEVIEDPLEAIEST------ERATVVTGSLFL 423 (442)
T ss_dssp CHHH---HHHHHHHHCSCCEECSSHHHHHHTC------CSEEEEESCHHH
T ss_pred CHHH---HHHHHHhcCCCceecCCHHHHHHhC------CCEEEEEeeHHH
Confidence 1100 0000111 0112334666666554 678888888544
|
| >1w78_A FOLC bifunctional protein; DHFS, dihydrofolate synthase, synthase, ATP-binding, folate biosynthesis, ligase, multifunctional enzyme; HET: KCX PD8 ADP; 1.82A {Escherichia coli} PDB: 1w7k_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-59 Score=554.69 Aligned_cols=395 Identities=24% Similarity=0.351 Sum_probs=320.1
Q ss_pred CCcHHHHHHHHHhcchhHHHHHhhhcCCCcccccccchHHHHHHHHHhcCCccCCCCccEEEEcCCCChhHHHHHHHHHH
Q psy15432 51 PQSYVDAIKQLNTLQSNIRTIRESKLRKDPVEMQAVQVDQVVQYLGHLNITLDDIKKLNVIHISGTKGKGSTCAYCESIL 130 (1255)
Q Consensus 51 ~~~y~eai~~L~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~Lg~~~~~~~~l~vIhVtGTnGKgST~a~l~sIL 130 (1255)
.++|++++++|.++.. .+. .+++++|+++|++||+|. .++++|||||||||||||+|+++||
T Consensus 10 ~~~~~~~~~~~~~~~~----------~~~-----~~gl~r~~~~l~~lg~p~---~~~~vI~VTGTnGKtTT~~~l~~iL 71 (422)
T 1w78_A 10 ASPLASWLSYLENLHS----------KTI-----DLGLERVSLVAARLGVLK---PAPFVFTVAGTNGKGTTCRTLESIL 71 (422)
T ss_dssp TSCHHHHHHHHTTSSS----------SSC-----CCCSHHHHHHHHHHTCSS---CSSEEEEEECSSCHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHhccc----------CCC-----CCCHHHHHHHHHHcCCcc---cCCcEEEEeCCcChHHHHHHHHHHH
Confidence 3579999998887532 121 369999999999999998 5679999999999999999999999
Q ss_pred HHCCCCeEEEcCCcccccceeEEeCCeecChhhhhhHHHHHHHHHHhhhhccCCcchHHHHHHHHhhhhhhccCCCEEEE
Q psy15432 131 RSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTKYFWTVYNALHAKRKHAEDMPAYFKFLTVMSFYVFVKEKPDAVIM 210 (1255)
Q Consensus 131 ~~~G~k~Gl~tSPhL~~~rERI~InG~~is~~~ft~~~~~v~~~l~~~~~~~~~~p~~Fe~Lt~~A~~~F~~~~vD~aVl 210 (1255)
+++|+++|+|+|||+.++||||+|||.+++++.|.++++.+.+... +..+++|+++|++||.+|.++++|++||
T Consensus 72 ~~~G~~~g~~~s~~l~~~neri~i~g~~i~~~~~~~~~~~v~~~~~------~~~~t~~e~~t~~a~~~~~~~~~d~~Vl 145 (422)
T 1w78_A 72 MAAGYKVGVYSSPHLVRYTERVRVQGQELPESAHTASFAEIESARG------DISLTYFEYGTLSALWLFKQAQLDVVIL 145 (422)
T ss_dssp HHTTCCEEEECCSCSSCGGGGEEETTEECCHHHHHHHHHHHHHHTT------TCCCCHHHHHHHHHHHHHHHHTCSEEEE
T ss_pred HHCCCCEEEECCCCcCcCceEEEECCEECCHHHHHHHHHHHHHHhc------cCCCChHHHHHHHHHHHHHHcCCCEEEE
Confidence 9999999999999999999999999999999999999888765442 2468999999999999999999999999
Q ss_pred eeccCCccccccccCCccEEEEcCCCcchhhhcCCCHHHHHHHHHcccCCCceeeeccCCCchHHHHHHHhhhccCceEE
Q psy15432 211 EVGIGGRYDNTNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIMKPNCIAVTSANQRGPCKQILLETSRALNCVLL 290 (1255)
Q Consensus 211 EvG~GGr~D~tnii~~P~v~vITnIg~DHld~lG~Tle~Ia~~KagI~k~g~~~v~~~~q~~e~~~vl~~~a~~~~~~l~ 290 (1255)
|||+||++|+||++ +|+++|||||+.||+++||+|+|+|+++|++||+++.++|++. + +. ..++.+.+.+.+++++
T Consensus 146 Evgl~~~~d~t~~~-~p~vaviTnI~~DHld~~g~t~e~ia~~K~~i~~~~~~~v~~~-d-~~-~~~~~~~a~~~~~~~~ 221 (422)
T 1w78_A 146 EVGLGGRLDATNIV-DADVAVVTSIALDHTDWLGPDRESIGREKAGIFRSEKPAIVGE-P-EM-PSTIADVAQEKGALLQ 221 (422)
T ss_dssp ECSSSSTTSGGGGS-CCSEEEECCCCSCCHHHHCSSHHHHHHHHGGGCCTTSEEEECC-S-SC-CHHHHHHHHHHTCEEE
T ss_pred ecCCCcccccccCC-CCCEEEECCcChhhhhhhCCCHHHHHHHHHhhccCCCcEEEcC-c-cH-HHHHHHHHHHcCCceE
Confidence 99999999999998 6999999999999999999999999999999999999988865 3 32 2456565655555666
Q ss_pred EcCCcce-------eeec--Ccc-cccCCCchhHHhhHHHHHHHHHHHHHhhccchhhhhHHHHhhhhhccCCCCCCCCC
Q psy15432 291 EAPSILN-------YRWR--GQP-LDEDWKSTVQSINISLAIQLAYLWMFRMNKSAELKSVIDKFLAEMRVSSPNETPGG 360 (1255)
Q Consensus 291 ~~~~~~~-------~~~~--~~~-i~l~l~G~~q~~Na~lAia~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (1255)
.++.... +.+. +.. +.++++ .||++|+++|++++..+
T Consensus 222 ~~g~~~~~~~~~~~~~~~~~~~~~~~l~l~-~hn~~Na~aAia~~~~~-------------------------------- 268 (422)
T 1w78_A 222 RRGVEWNYSVTDHDWAFSDAHGTLENLPLP-LVPQPNAATALAALRAS-------------------------------- 268 (422)
T ss_dssp EBTTTBEEEECSSCEEEEETTEEEEEECCC-SSCHHHHHHHHHHHHHH--------------------------------
T ss_pred EeCcceeeeccCceEEEecCCcccccCCch-HHHHHHHHHHHHHHHHh--------------------------------
Confidence 5543111 1111 112 467888 99999999999988764
Q ss_pred CCCCCccCCCCCCCCccccCCCCCCCCccccccccCCCCCCCChHHHHHHHhcCCCCCceEEEEecCcEEEEccCCCHHH
Q psy15432 361 QGHLSSCETPGGQGHLSFSETPGGQGHLTGNQSSLLMGPHFEIDPKTYRGIKACVWPGRVQVIRKNNFKYFLDGAHTTDS 440 (1255)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~e~i~~gL~~~~~pGR~e~v~~~~~~vilDgAHnp~s 440 (1255)
. .+++ ++.|.+||++++||||||++..++ .+|+||||||+|
T Consensus 269 ---------------------------------~----~gi~-~~~i~~~L~~~~~~gR~e~~~~~~-~~i~D~Ahnp~s 309 (422)
T 1w78_A 269 ---------------------------------G----LEVS-ENAIRDGIASAILPGRFQIVSESP-RVIFDVAHNPHA 309 (422)
T ss_dssp ---------------------------------T----CCCC-HHHHHHHHHHCCCTTSSEEEETTT-EEEEECCCSHHH
T ss_pred ---------------------------------C----CCCC-HHHHHHHHHhCCCCceEEEEeCCC-eEEEECCCCHHH
Confidence 0 1567 899999999999999999998654 799999999999
Q ss_pred HHHHHHHHHhhhhcccccCccCCCCCCCCCccCCCCCccEEEEEecCCCCChhhhhHHhhccCCCcEEEEcCCCC-CCCC
Q psy15432 441 IELCAKWFLRKSEAEASSSRSVSSCPLDPTQSKSSNVIQRILVFNVTGERDPTKLLSPLLQSNQFEYILVTPNIL-TNES 519 (1255)
Q Consensus 441 i~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilVfg~~~drD~~~ll~~L~~~~~~d~vi~t~~~~-~~~~ 519 (1255)
+++++++++..... +++++|||++++||+.++++.+ + ..+|.+++++... +.++
T Consensus 310 ~~~~l~~l~~~~~~-----------------------~~~i~V~g~~~~kd~~~~~~~l-~-~~~d~vi~~~~~~~r~~~ 364 (422)
T 1w78_A 310 AEYLTGRMKALPKN-----------------------GRVLAVIGMLHDKDIAGTLAWL-K-SVVDDWYCAPLEGPRGAT 364 (422)
T ss_dssp HHHHHHHHHHSCSC-----------------------SCEEEEECCBTTSCHHHHHHHH-H-TTCSEEEECCCCSSSBCC
T ss_pred HHHHHHHHHHhCCC-----------------------CCEEEEEeccCCCCHHHHHHHH-H-hhCCEEEEECCCCCCCCC
Confidence 99999999865311 2789999999999999999988 3 3588888875322 2111
Q ss_pred CCCCcCCCCcccccccccccccCCCCCCCCCCCCCCCCCCCCCcccCCCCCcccCCCCCCCcccccccccccchhhHHHH
Q psy15432 520 SPDTQYGGNRTIDRFGVKLDSRTAAPNGGHEPGRPNVGQGGGGFQSRSGDNSIRSNANPLSSVDCHNVNDQSNSFHKIAT 599 (1255)
Q Consensus 520 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 599 (1255)
...+++
T Consensus 365 --------------------------------------------------------------------------~~~l~~ 370 (422)
T 1w78_A 365 --------------------------------------------------------------------------AEQLLE 370 (422)
T ss_dssp --------------------------------------------------------------------------HHHHHH
T ss_pred --------------------------------------------------------------------------HHHHHH
Confidence 011332
Q ss_pred HHhhccCCCcEEEcCCHHHHHHHHhccCCCCCceEEEecccccccccceeec
Q psy15432 600 VASALSQRSKVVEFSSVLDTYNFKYGLDPSKEYHILVTGSLHLVGAFLNVLI 651 (1255)
Q Consensus 600 ~~~~~~~~~~~~~~~si~~ai~~~~~~~~~~~~~vlvtGSlhLVGgvL~~l~ 651 (1255)
.+. ++..++|+++|++.+.... .+++.|||+||+|+++.++..+.
T Consensus 371 ~~~------~~~~~~~~~~ai~~a~~~~-~~~d~vLv~GS~~~~~~~~~~l~ 415 (422)
T 1w78_A 371 HLG------NGKSFDSVAQAWDAAMADA-KAEDTVLVCGSFHTVAHVMEVID 415 (422)
T ss_dssp HHS------SCEECSSHHHHHHHHHHHC-CTTCEEEEESSHHHHHHHHHHHH
T ss_pred HHh------hcccCCCHHHHHHHHHHhc-CCCCEEEEEeeHHHHHHHHHHHH
Confidence 222 1457899999999998876 46788999999999998865543
|
| >1w78_A FOLC bifunctional protein; DHFS, dihydrofolate synthase, synthase, ATP-binding, folate biosynthesis, ligase, multifunctional enzyme; HET: KCX PD8 ADP; 1.82A {Escherichia coli} PDB: 1w7k_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-57 Score=535.33 Aligned_cols=385 Identities=23% Similarity=0.304 Sum_probs=310.8
Q ss_pred ccHHHHHHHHHhcchhHHHHHHhhccCCcccccccchHHHHHHHHHhcCcccccccceEEEecCCCCCccHHHHHHHHHH
Q psy15432 664 QSYVDAIKQLNTLQSNIRTIRESKLRKDPVEMQAVQVDQVVQYLGHLNITLDDIKKLNVIHISGTKGKGSTCAYCESILR 743 (1255)
Q Consensus 664 ~~y~~a~~~L~~lqsn~~~l~~~~~~g~~~~~~~~~v~~~~~~L~~Lg~~~~~~~~l~vIhVTGTnGKgST~aml~sILr 743 (1255)
++|++++++|.++.. .+. .+++++|+++|++||+|+ .++++|||||||||||||+|+++||+
T Consensus 11 ~~~~~~~~~~~~~~~----------~~~-----~~gl~r~~~~l~~lg~p~---~~~~vI~VTGTnGKtTT~~~l~~iL~ 72 (422)
T 1w78_A 11 SPLASWLSYLENLHS----------KTI-----DLGLERVSLVAARLGVLK---PAPFVFTVAGTNGKGTTCRTLESILM 72 (422)
T ss_dssp SCHHHHHHHHTTSSS----------SSC-----CCCSHHHHHHHHHHTCSS---CSSEEEEEECSSCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHhccc----------CCC-----CCCHHHHHHHHHHcCCcc---cCCcEEEEeCCcChHHHHHHHHHHHH
Confidence 468999888877532 122 279999999999999998 56799999999999999999999999
Q ss_pred HCCCCeEEEcCcccccccceeeeCCeecChhhhhhHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHHhhhcCCCCEEEEe
Q psy15432 744 SHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTKYFWTVYNALHAKRKHAEDMPAYFKFLTVMSFYVFVKEKPDAVIME 823 (1255)
Q Consensus 744 ~~G~rtGl~tSPhL~~~~ERI~InG~pIs~~~f~~~~~~v~~~l~~~~~~~~~~pt~Fe~lT~mAf~~F~~~~vD~aVlE 823 (1255)
++|+++|+|+|||+.++||||+|||.+++++.|.++++.+.+.. +...+++||++|++||.+|.++++|++|+|
T Consensus 73 ~~G~~~g~~~s~~l~~~neri~i~g~~i~~~~~~~~~~~v~~~~------~~~~~t~~e~~t~~a~~~~~~~~~d~~VlE 146 (422)
T 1w78_A 73 AAGYKVGVYSSPHLVRYTERVRVQGQELPESAHTASFAEIESAR------GDISLTYFEYGTLSALWLFKQAQLDVVILE 146 (422)
T ss_dssp HTTCCEEEECCSCSSCGGGGEEETTEECCHHHHHHHHHHHHHHT------TTCCCCHHHHHHHHHHHHHHHHTCSEEEEE
T ss_pred HCCCCEEEECCCCcCcCceEEEECCEECCHHHHHHHHHHHHHHh------ccCCCChHHHHHHHHHHHHHHcCCCEEEEe
Confidence 99999999999999999999999999999999999887776542 234689999999999999999999999999
Q ss_pred cccCCccccccccCCCcEEEEcCCCchhhhhcCCCHHHHHHHHhccccCCceEEEccCCCChhHHHHHHHhhhcCCeEEE
Q psy15432 824 VGIGGRYDNTNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIMKPNCIAVTSANQRGPCKQILLETSRALNCVLLE 903 (1255)
Q Consensus 824 VG~GGr~D~TNvi~~P~VavITnIg~DHl~~LG~TleeIA~~KagI~K~g~~av~~~~qd~~~~~vl~~~A~~~~~~l~~ 903 (1255)
||+||++|.||++ +|+++|||||+.||+++||+|+|+|+++|++||+++.++|++. ++. ..++.+.+.+.+++++.
T Consensus 147 vgl~~~~d~t~~~-~p~vaviTnI~~DHld~~g~t~e~ia~~K~~i~~~~~~~v~~~--d~~-~~~~~~~a~~~~~~~~~ 222 (422)
T 1w78_A 147 VGLGGRLDATNIV-DADVAVVTSIALDHTDWLGPDRESIGREKAGIFRSEKPAIVGE--PEM-PSTIADVAQEKGALLQR 222 (422)
T ss_dssp CSSSSTTSGGGGS-CCSEEEECCCCSCCHHHHCSSHHHHHHHHGGGCCTTSEEEECC--SSC-CHHHHHHHHHHTCEEEE
T ss_pred cCCCcccccccCC-CCCEEEECCcChhhhhhhCCCHHHHHHHHHhhccCCCcEEEcC--ccH-HHHHHHHHHHcCCceEE
Confidence 9999999999998 6999999999999999999999999999999999999999876 332 34666666666677777
Q ss_pred cCCccc-------eec--cCCc-cccCCCchhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHhhhhhcCCCCCCCCCC
Q psy15432 904 APSILN-------YRW--RGQP-LDEDWKSTVQSINISLAIQLAYLWMFRMNKSAELKSVIDKFLAEMRVSSPNETPGGQ 973 (1255)
Q Consensus 904 ~~~~~~-------~~~--~~~~-v~l~L~G~hq~~Na~lAiala~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 973 (1255)
++.... +.+ .+.. +.++++ .||++|+++|++++..+
T Consensus 223 ~g~~~~~~~~~~~~~~~~~~~~~~~l~l~-~hn~~Na~aAia~~~~~--------------------------------- 268 (422)
T 1w78_A 223 RGVEWNYSVTDHDWAFSDAHGTLENLPLP-LVPQPNAATALAALRAS--------------------------------- 268 (422)
T ss_dssp BTTTBEEEECSSCEEEEETTEEEEEECCC-SSCHHHHHHHHHHHHHH---------------------------------
T ss_pred eCcceeeeccCceEEEecCCcccccCCch-HHHHHHHHHHHHHHHHh---------------------------------
Confidence 653211 111 1112 467888 99999999999988751
Q ss_pred CCCCcCCCCCCCCCccccCCCCCCCCcccccccccCCCCCCCC-HHHHHHHhcCCCCCcEEEEeecCcEEEEEcCcCHHH
Q psy15432 974 GHLSSCETPGGQGHLSFSETPGGQGHLTGNQSSLLMGPHFEID-PKTYRGIKACVWPGRVQVIRKNNFKYFLDGAHTTDS 1052 (1255)
Q Consensus 974 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~i~-~~i~~gL~~~~~pGR~E~v~~~~~~vilDgAHNP~S 1052 (1255)
+++++ +.+.+||++++||||||++..++ .+|+||||||+|
T Consensus 269 --------------------------------------~~gi~~~~i~~~L~~~~~~gR~e~~~~~~-~~i~D~Ahnp~s 309 (422)
T 1w78_A 269 --------------------------------------GLEVSENAIRDGIASAILPGRFQIVSESP-RVIFDVAHNPHA 309 (422)
T ss_dssp --------------------------------------TCCCCHHHHHHHHHHCCCTTSSEEEETTT-EEEEECCCSHHH
T ss_pred --------------------------------------CCCCCHHHHHHHHHhCCCCceEEEEeCCC-eEEEECCCCHHH
Confidence 04566 67999999999999999998654 799999999999
Q ss_pred HHHHHHHHHhhhccccCCCcccCCCCCcEEEEEecCCCCChhhhhhhhhcCCCCcEEEEcCCCCcccccccCCCCCcccc
Q psy15432 1053 IELCAKWFLRKSEAEANPTQSKSSNVIQRILVFNVTGERDPTKLLSPLLQSNQFEYILVTPNILTNEIRWRGQPLDEDWK 1132 (1255)
Q Consensus 1053 ~~a~l~~l~~~~~~~~~~~~~~~~~~~~~vlVfg~~~drD~~~ll~~L~~~~~~d~vi~t~~~~~~~~~~~~~~~~~~~~ 1132 (1255)
+++++++++... +.+++++|||+++|||...+++.+ .+ .+|.+++++.......... .+...+.
T Consensus 310 ~~~~l~~l~~~~------------~~~~~i~V~g~~~~kd~~~~~~~l-~~-~~d~vi~~~~~~~r~~~~~--~l~~~~~ 373 (422)
T 1w78_A 310 AEYLTGRMKALP------------KNGRVLAVIGMLHDKDIAGTLAWL-KS-VVDDWYCAPLEGPRGATAE--QLLEHLG 373 (422)
T ss_dssp HHHHHHHHHHSC------------SCSCEEEEECCBTTSCHHHHHHHH-HT-TCSEEEECCCCSSSBCCHH--HHHHHHS
T ss_pred HHHHHHHHHHhC------------CCCCEEEEEeccCCCCHHHHHHHH-Hh-hCCEEEEECCCCCCCCCHH--HHHHHHh
Confidence 999999998642 125789999999999999999888 33 4788888764332211110 0000011
Q ss_pred cccccccCCHHHHHHHHHHHcCCCceEEeecCCCC
Q psy15432 1133 STVQSINISLAIQLAYLWMFRMNKSAELKRNQSSL 1167 (1255)
Q Consensus 1133 ~d~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 1167 (1255)
...+..+.++.++.+.....+++++|++||..+
T Consensus 374 --~~~~~~~~~~ai~~a~~~~~~~d~vLv~GS~~~ 406 (422)
T 1w78_A 374 --NGKSFDSVAQAWDAAMADAKAEDTVLVCGSFHT 406 (422)
T ss_dssp --SCEECSSHHHHHHHHHHHCCTTCEEEEESSHHH
T ss_pred --hcccCCCHHHHHHHHHHhcCCCCEEEEEeeHHH
Confidence 122446889999999888888999999998554
|
| >1e8c_A UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase; peptidoglycan biosynthesis; HET: KCX UAG API; 2.00A {Escherichia coli} SCOP: c.98.1.1 c.59.1.1 c.72.2.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=7.8e-50 Score=482.17 Aligned_cols=364 Identities=16% Similarity=0.119 Sum_probs=272.8
Q ss_pred eeccccccccccccCCCceeEeecccccCCcccccccCCCCCCCcH-HHHHHHHHhcchhHHHHHhh-hcCCCccccccc
Q psy15432 9 LKELKLNKDAHRKTLPDKTEVHHGGYKHGAVTPHASRSNKEIPQSY-VDAIKQLNTLQSNIRTIRES-KLRKDPVEMQAV 86 (1255)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y-~eai~~L~~l~~~~~~~~~~-~~~~~~~~~~~~ 86 (1255)
+.+++.+..+||++.|+.+||+++|.+.+++.|+.+...+....-. ++.+. . .+ .+. ...+.+ .+
T Consensus 18 ~~~i~~v~~DSR~v~~g~lFval~G~~~DGh~fi~~A~~~GA~avv~~~~~~---~--~~----~e~~~~~~~~----~i 84 (498)
T 1e8c_A 18 SRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDE---A--TD----GEIREMHGVP----VI 84 (498)
T ss_dssp CCBCCCEESCGGGCCTTCEEEECBCSSCBGGGGHHHHHHTTCSEEEEECTTT---C--CT----TCEEEETTEE----EE
T ss_pred CceeeeEEeeCcCCCCCCEEEEecCCcCCHHHHHHHHHHCCCeEEEEcCccc---c--cc----ccccccCCcc----EE
Confidence 3478889999999999999999999999999987665554322111 00000 0 00 000 000112 26
Q ss_pred chHHHHHHHHHhcCCccCCC--CccEEEEcCCCChhHHHHHHHHHHHHCCCCeEEEcCCcccccceeEEeCCeecChhhh
Q psy15432 87 QVDQVVQYLGHLNITLDDIK--KLNVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKF 164 (1255)
Q Consensus 87 ~l~~~~~~L~~Lg~~~~~~~--~l~vIhVtGTnGKgST~a~l~sIL~~~G~k~Gl~tSPhL~~~rERI~InG~~is~~~f 164 (1255)
.|++++++|+.|+..+++.| ++++||||||||||||++|+++||+++|+++|+++|++ ..+|+..++.
T Consensus 85 ~V~d~~~aL~~la~~~~~~p~~~~~vI~VTGTnGKTTT~~ml~~iL~~~g~~~~~~gs~~-------~~i~~~~~~~--- 154 (498)
T 1e8c_A 85 YLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGKTTTTQLLAQWSQLLGEISAVMGTVG-------NGLLGKVIPT--- 154 (498)
T ss_dssp EETTHHHHHHHHHHHHTTCGGGSSEEEEEESSSCHHHHHHHHHHHHHHTTCCEEEEETTE-------EEETTCCBCC---
T ss_pred EECCHHHHHHHHHHHHhCCCcccCeEEEEeCCcChHHHHHHHHHHHHhCCCCEEEECCCC-------cccCCeeeec---
Confidence 78999999999987766644 67899999999999999999999999999999999998 6788776651
Q ss_pred hhHHHHHHHHHHhhhhccCCcchHHHHHHHHh-hhhhhccCCCEEEEeecc----CCccccccccCCccEEEEcCCCcch
Q psy15432 165 TKYFWTVYNALHAKRKHAEDMPAYFKFLTVMS-FYVFVKEKPDAVIMEVGI----GGRYDNTNIIPNTAVVGITSLGYDH 239 (1255)
Q Consensus 165 t~~~~~v~~~l~~~~~~~~~~p~~Fe~Lt~~A-~~~F~~~~vD~aVlEvG~----GGr~D~tnii~~P~v~vITnIg~DH 239 (1255)
.+++|+.+++++ |.+|.++++|++|||||+ +||+|++| |+++|||||+.||
T Consensus 155 --------------------~~t~~~~~~l~~~l~~~~~~~~d~~VlEvgs~~l~~~rl~~~~----p~vaViTNI~~DH 210 (498)
T 1e8c_A 155 --------------------ENTTGSAVDVQHELAGLVDQGATFCAMEVSSHGLVQHRVAALK----FAASVFTNLSRDH 210 (498)
T ss_dssp --------------------SSSSCCHHHHHHHHHHHHHTTCCEEEEECCHHHHHTTTTTTCB----CSEEEECCCCSCC
T ss_pred --------------------CCCCCCHHHHHHHHHHHHhCCCCEEEEEcCCchhhcccccccC----CCEEEEeCCChhh
Confidence 234555566554 677889999999999997 57999865 6999999999999
Q ss_pred hhhcCCCHHHHHHHHHcccCC--CceeeeccCCCchHHHHHHHhhhccCceEEEcCC-------------------ccee
Q psy15432 240 TAVLGNTIEEITMQKAGIMKP--NCIAVTSANQRGPCKQILLETSRALNCVLLEAPS-------------------ILNY 298 (1255)
Q Consensus 240 ld~lG~Tle~Ia~~KagI~k~--g~~~v~~~~q~~e~~~vl~~~a~~~~~~l~~~~~-------------------~~~~ 298 (1255)
+++|| |+|+|+++|++||+. +.++|++. +++....++ +.+...+++++.++. ...+
T Consensus 211 ld~~g-t~e~ia~aK~~i~~~~~~~~~V~n~-dd~~~~~~~-~~~~~~~~~v~~~g~~~~~~~~d~~~~~~~~~~~g~~f 287 (498)
T 1e8c_A 211 LDYHG-DMEHYEAAKWLLYSEHHCGQAIINA-DDEVGRRWL-AKLPDAVAVSMEDHINPNCHGRWLKATEVNYHDSGATI 287 (498)
T ss_dssp HHHHS-SHHHHHHHHHHHHHTSBCCEEEEET-TSHHHHHHH-TTCTTCEEEESSSCCCTTTCSEEEEEEEEEECSSCEEE
T ss_pred hhccC-CHHHHHHHHHHHhccCCCCeEEEEC-CCHHHHHHH-HhhhccCCcEEEEecCCCCCcCCEEEEEEEEcCCceEE
Confidence 99999 999999999999985 67788877 555444443 333222122222211 0112
Q ss_pred eec----CcccccCCCchhHHhhHHHHHHHHHHHHHhhccchhhhhHHHHhhhhhccCCCCCCCCCCCCCCccCCCCCCC
Q psy15432 299 RWR----GQPLDEDWKSTVQSINISLAIQLAYLWMFRMNKSAELKSVIDKFLAEMRVSSPNETPGGQGHLSSCETPGGQG 374 (1255)
Q Consensus 299 ~~~----~~~i~l~l~G~~q~~Na~lAia~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (1255)
.+. ...+.++++|.||++|+++|++++..+
T Consensus 288 ~~~~~~~~~~~~l~l~G~hnv~NalaAia~~~~l---------------------------------------------- 321 (498)
T 1e8c_A 288 RFSSSWGDGEIESHLMGAFNVSNLLLALATLLAL---------------------------------------------- 321 (498)
T ss_dssp EEEETTCCEEEEECSCSHHHHHHHHHHHHHHHHT----------------------------------------------
T ss_pred EEEECCceEEEEecCCcHHHHHHHHHHHHHHHHc----------------------------------------------
Confidence 221 114678999999999999999988764
Q ss_pred CccccCCCCCCCCccccccccCCCCCCCChHHHHHHHhcCC-CCCceEEEEec-CcEEEEccCCCHHHHHHHHHHHHhhh
Q psy15432 375 HLSFSETPGGQGHLTGNQSSLLMGPHFEIDPKTYRGIKACV-WPGRVQVIRKN-NFKYFLDGAHTTDSIELCAKWFLRKS 452 (1255)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~e~i~~gL~~~~-~pGR~e~v~~~-~~~vilDgAHnp~si~~~l~~l~~~~ 452 (1255)
|++ ++.|.+||++++ ||||||++... ++.||+||||||+|+++++++++...
T Consensus 322 -------------------------Gi~-~~~i~~~L~~~~~~~gR~e~v~~~~~~~vi~DyahnP~s~~a~l~~l~~~~ 375 (498)
T 1e8c_A 322 -------------------------GYP-LADLLKTAARLQPVCGRMEVFTAPGKPTVVVDYAHTPDALEKALQAARLHC 375 (498)
T ss_dssp -------------------------TCC-HHHHHHHGGGCCCCTTSSEEECCTTSCEEEEECCCSHHHHHHHHHHHHHTC
T ss_pred -------------------------CCC-HHHHHHHHHhCCCCCCceEEEEcCCCCEEEEECCCCHHHHHHHHHHHHhhC
Confidence 667 899999999998 99999999764 56899999999999999999998642
Q ss_pred hcccccCccCCCCCCCCCccCCCCCccEEEEEecCCCCChh--hhhHHhhccCCCcEEEEcCCCCCCCC
Q psy15432 453 EAEASSSRSVSSCPLDPTQSKSSNVIQRILVFNVTGERDPT--KLLSPLLQSNQFEYILVTPNILTNES 519 (1255)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilVfg~~~drD~~--~ll~~L~~~~~~d~vi~t~~~~~~~~ 519 (1255)
. +++++|||++++||.. .++..+ +...+|.+|+|+++++.++
T Consensus 376 ~------------------------~r~i~V~G~g~dr~~~~~~~~~~~-~~~~~d~vi~~~~~~r~e~ 419 (498)
T 1e8c_A 376 A------------------------GKLWCVFGCGGDRDKGKRPLMGAI-AEEFADVAVVTDDNPRTEE 419 (498)
T ss_dssp S------------------------SCEEEEECCCSSSCSTHHHHHHHH-HHHHCSEEEECCSCCBTSC
T ss_pred C------------------------CCEEEEECCCCCcchhHHHHHHHH-HHhCCCEEEEcCCCCCCCC
Confidence 1 2789999999988863 344444 3446899999988887665
|
| >2wtz_A UDP-N-acetylmuramoyl-L-alanyl-D-glutamate- -2,6-diaminopimelate ligase; nucleotide-binding, peptidoglycan synthesis, MURE, C shape; HET: KCX UAG; 3.00A {Mycobacterium tuberculosis} PDB: 2xja_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-49 Score=478.74 Aligned_cols=414 Identities=20% Similarity=0.225 Sum_probs=304.8
Q ss_pred eeccccccccccccCCCceeEeecccccCCcccccccCCCCCCCcH-HHHHHHHHhcchhHHHHHhhhcC-CCccccccc
Q psy15432 9 LKELKLNKDAHRKTLPDKTEVHHGGYKHGAVTPHASRSNKEIPQSY-VDAIKQLNTLQSNIRTIRESKLR-KDPVEMQAV 86 (1255)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y-~eai~~L~~l~~~~~~~~~~~~~-~~~~~~~~~ 86 (1255)
+.++..+..+||++.|+.+||+++|.+.+++.|+++...++..... ++.... ..... +.+ .+
T Consensus 59 ~~~i~~v~~DSR~v~~g~lFval~G~~~dGh~fi~~A~~~GA~avv~~~~~~~------------~~~~~~~~~----~i 122 (535)
T 2wtz_A 59 DRTVTGVTLRAQDVSPGDLFAALTGSTTHGARHVGDAIARGAVAVLTDPAGVA------------EIAGRAAVP----VL 122 (535)
T ss_dssp TCBCCEEESCGGGCCTTEEEEECBCSSCBGGGGHHHHHHTTCCEEEECHHHHH------------HHCSCCSSC----EE
T ss_pred CcceeeEEecCCcCCCCCEEEEeccccccHHHHHHHHHHCCCeEEEEecCccc------------ccccCCCce----EE
Confidence 3578889999999999999999999999999988776665432111 111100 00000 212 25
Q ss_pred chHHHHHHHHHhcCCccCCC--CccEEEEcCCCChhHHHHHHHHHHHHCCCCeEEEcCCcccccceeEEeCCeecChhhh
Q psy15432 87 QVDQVVQYLGHLNITLDDIK--KLNVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKF 164 (1255)
Q Consensus 87 ~l~~~~~~L~~Lg~~~~~~~--~l~vIhVtGTnGKgST~a~l~sIL~~~G~k~Gl~tSPhL~~~rERI~InG~~is~~~f 164 (1255)
.+++++++|+.|+..+++.+ ++++||||||||||||++||++||+++|+++|+++|. ++.+||..++..
T Consensus 123 ~v~d~~~aL~~la~~~~~~p~~~~~vI~VTGTnGKTTT~~ml~~iL~~~G~~~g~~gs~-------~~~i~~~~~~~~-- 193 (535)
T 2wtz_A 123 VHPAPRGVLGGLAATVYGHPSERLTVIGITGTSGKTTTTYLVEAGLRAAGRVAGLIGTI-------GIRVGGADLPSA-- 193 (535)
T ss_dssp ECSSSHHHHHHHHHHHTTCGGGSSEEEEEESSSCHHHHHHHHHHHHHHTTCCEEEESSS-------CEEETTEEECCS--
T ss_pred EECCHHHHHHHHHHHHhcCccccceEEEeeCCCChHHHHHHHHHHHHHCCCCEEEECCc-------ceeECCEecccC--
Confidence 68899999999987766655 7899999999999999999999999999999999984 599999988833
Q ss_pred hhHHHHHHHHHHhhhhccCCcchHHHHHHHHhh-hhhhccCCCEEEEeecc----CCccccccccCCccEEEEcCCCcch
Q psy15432 165 TKYFWTVYNALHAKRKHAEDMPAYFKFLTVMSF-YVFVKEKPDAVIMEVGI----GGRYDNTNIIPNTAVVGITSLGYDH 239 (1255)
Q Consensus 165 t~~~~~v~~~l~~~~~~~~~~p~~Fe~Lt~~A~-~~F~~~~vD~aVlEvG~----GGr~D~tnii~~P~v~vITnIg~DH 239 (1255)
++.|+.++++++ ..|.++++|++|||||+ +||+|++ +|+++|||||+.||
T Consensus 194 ---------------------~tt~e~~~l~~~l~~~~~~~~d~~VlEvgs~~l~~~rl~~~----~p~vaViTNI~~DH 248 (535)
T 2wtz_A 194 ---------------------LTTPEAPTLQAMLAAMVERGVDTVVMEVSSHALALGRVDGT----RFAVGAFTNLSRDH 248 (535)
T ss_dssp ---------------------SSSCCHHHHHHHHHHHHHTTCCEEEEECCHHHHHTTTTTTC----CEEEEEECCCCSCC
T ss_pred ---------------------CccCcHHHHHHHHHHHHhCCCCEEEEECCCccccccccccC----CcCEEEEcCCChHH
Confidence 233445555554 46689999999999997 5899885 47999999999999
Q ss_pred hhhcCCCHHHHHHHHHcccCCC-----ceeeeccCCCchHHHHHHHhhhccCceEEEcCC----------------ccee
Q psy15432 240 TAVLGNTIEEITMQKAGIMKPN-----CIAVTSANQRGPCKQILLETSRALNCVLLEAPS----------------ILNY 298 (1255)
Q Consensus 240 ld~lG~Tle~Ia~~KagI~k~g-----~~~v~~~~q~~e~~~vl~~~a~~~~~~l~~~~~----------------~~~~ 298 (1255)
+++|| |+|+|+++|++||++. ..+|++. +++....++. .+. ....|.... ...+
T Consensus 249 ld~~g-s~e~ia~aK~~i~~~~~~~~~g~~Vln~-Dd~~~~~~~~-~~~--~v~~~g~~~~~~d~~~~~i~~~~~~g~~f 323 (535)
T 2wtz_A 249 LDFHP-SMADYFEAKASLFDPDSALRARTAVVCI-DDDAGRAMAA-RAA--DAITVSAADRPAHWRATDVAPTDAGGQQF 323 (535)
T ss_dssp TTTSS-SHHHHHHHHHTTTCTTSTTCCSEEEEEC-SSHHHHHHHH-HHS--SCEEEESSSSCCSEEEEEEEEETTTEEEE
T ss_pred hhhcC-CHHHHHHHHHHHhccccccCCCeEEEEC-CCHHHHHHHH-hcC--CEEEEecCCCcCcEEEEEEEEcCCCCeEE
Confidence 99999 9999999999999854 4677776 5554444433 332 122222211 1112
Q ss_pred eec---C--cccccCCCchhHHhhHHHHHHHHHHHHHhhccchhhhhHHHHhhhhhccCCCCCCCCCCCCCCccCCCCCC
Q psy15432 299 RWR---G--QPLDEDWKSTVQSINISLAIQLAYLWMFRMNKSAELKSVIDKFLAEMRVSSPNETPGGQGHLSSCETPGGQ 373 (1255)
Q Consensus 299 ~~~---~--~~i~l~l~G~~q~~Na~lAia~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (1255)
.+. + ..+.++++|.||++|+++|++++..+
T Consensus 324 ~~~~~~~~~~~~~l~l~G~hnv~NalaAia~a~~l--------------------------------------------- 358 (535)
T 2wtz_A 324 TAIDPAGVGHHIGIRLPGRYNVANCLVALAILDTV--------------------------------------------- 358 (535)
T ss_dssp EEECTTSCEEEEEESCCSHHHHHHHHHHHHHHHHT---------------------------------------------
T ss_pred EEEeCCceEEEEEeCCCCHHHHHHHHHHHHHHHHc---------------------------------------------
Confidence 221 1 24678999999999999999988764
Q ss_pred CCccccCCCCCCCCccccccccCCCCCCCChHHHHHHHhcCCCCCceEEEEec-CcEEEEccCCCHHHHHHHHHHHHhhh
Q psy15432 374 GHLSFSETPGGQGHLTGNQSSLLMGPHFEIDPKTYRGIKACVWPGRVQVIRKN-NFKYFLDGAHTTDSIELCAKWFLRKS 452 (1255)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~e~i~~gL~~~~~pGR~e~v~~~-~~~vilDgAHnp~si~~~l~~l~~~~ 452 (1255)
|++ .+.|.+||++++||||||++... ++++|+||||||+|+++++++++ .
T Consensus 359 --------------------------Gi~-~~~i~~~L~~~~~~gR~e~v~~~~~~~viiDyahNP~s~~aal~~l~-~- 409 (535)
T 2wtz_A 359 --------------------------GVS-PEQAVPGLREIRVPGRLEQIDRGQGFLALVDYAHKPEALRSVLTTLA-H- 409 (535)
T ss_dssp --------------------------TCC-HHHHHHHHTTCCCTTSSEECCSSCSSEEEEECCCSHHHHHHHHHTTC-C-
T ss_pred --------------------------CCC-HHHHHHHHHhCCCCCceEEEEcCCCcEEEEECCCCHHHHHHHHHHhh-C-
Confidence 667 89999999999999999999764 67799999999999999999986 3
Q ss_pred hcccccCccCCCCCCCCCccCCCCCccEEEEEecCCCCChhh--hhHHhhccCCCcEEEEcCCCCCCCCCCCCcCCCCcc
Q psy15432 453 EAEASSSRSVSSCPLDPTQSKSSNVIQRILVFNVTGERDPTK--LLSPLLQSNQFEYILVTPNILTNESSPDTQYGGNRT 530 (1255)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilVfg~~~drD~~~--ll~~L~~~~~~d~vi~t~~~~~~~~~~~~~~~~~~~ 530 (1255)
.. +++++|||+++|||... ++..+ +...+|.+++++++++.+++....
T Consensus 410 ~~-----------------------~r~i~V~G~~gdr~~~~~~~~~~~-a~~~~d~vi~~~~~~r~e~~~~i~------ 459 (535)
T 2wtz_A 410 PD-----------------------RRLAVVFGAGGDRDPGKRAPMGRI-AAQLADLVVVTDDNPRDEDPTAIR------ 459 (535)
T ss_dssp SS-----------------------SCEEEEECCCTTSCGGGHHHHHHH-HHHHCSEEEECCSCCTTSCHHHHH------
T ss_pred CC-----------------------CcEEEEECCCCccchhhHHHHHHH-HHhcCCEEEEcCCCCCCCCHHHHH------
Confidence 21 27899999999998764 33333 234689999999888776530000
Q ss_pred cccccccccccCCCCCCCCCCCCCCCCCCCCCcccCCCCCcccCCCCCCCcccccccccccchhhHHHHHHhhccCCCcE
Q psy15432 531 IDRFGVKLDSRTAAPNGGHEPGRPNVGQGGGGFQSRSGDNSIRSNANPLSSVDCHNVNDQSNSFHKIATVASALSQRSKV 610 (1255)
Q Consensus 531 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 610 (1255)
+.+............+
T Consensus 460 ----------------------------------------------------------------~~i~~g~~~~~~~~~~ 475 (535)
T 2wtz_A 460 ----------------------------------------------------------------REILAGAAEVGGDAQV 475 (535)
T ss_dssp ----------------------------------------------------------------HHHHHHHTTCC-CCEE
T ss_pred ----------------------------------------------------------------HHHHhhhhhcCCCCcE
Confidence 0111111110000246
Q ss_pred EEcCCHHHHHHHHhccCCCCCceEEEeccccccccc
Q psy15432 611 VEFSSVLDTYNFKYGLDPSKEYHILVTGSLHLVGAF 646 (1255)
Q Consensus 611 ~~~~si~~ai~~~~~~~~~~~~~vlvtGSlhLVGgv 646 (1255)
..++|+++|++.+.... .+++.|||+||.|.+.-.
T Consensus 476 ~~~~d~~~Ai~~a~~~a-~~gD~VLv~GsGhe~~q~ 510 (535)
T 2wtz_A 476 VEIADRRDAIRHAVAWA-RPGDVVLIAGKGHETGQR 510 (535)
T ss_dssp EECCSHHHHHHHHHHHC-CTTCEEEEESCTTCCCEE
T ss_pred EEECCHHHHHHHHHHhC-CCCCEEEEEeCCCcceEE
Confidence 78899999999998876 467899999999987654
|
| >1e8c_A UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase; peptidoglycan biosynthesis; HET: KCX UAG API; 2.00A {Escherichia coli} SCOP: c.98.1.1 c.59.1.1 c.72.2.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-46 Score=452.05 Aligned_cols=400 Identities=17% Similarity=0.101 Sum_probs=287.0
Q ss_pred eEEEecccccccccceeeccCCCCCCCCCCcccHHHHHHHHHhcchhHHHHHHhhccC---C-c-ccccccchHHHHHHH
Q psy15432 633 HILVTGSLHLVGAFLNVLITPHASRSNKEIPQSYVDAIKQLNTLQSNIRTIRESKLRK---D-P-VEMQAVQVDQVVQYL 707 (1255)
Q Consensus 633 ~vlvtGSlhLVGgvL~~l~~~ha~~~~~~~~~~y~~a~~~L~~lqsn~~~l~~~~~~g---~-~-~~~~~~~v~~~~~~L 707 (1255)
.=+.+.|+.+..|.|++..+++.+..+.-+ ++|++.=.. +...++..... . . .+.+...|++++++|
T Consensus 22 ~~v~~DSR~v~~g~lFval~G~~~DGh~fi----~~A~~~GA~----avv~~~~~~~~~~e~~~~~~~~~i~V~d~~~aL 93 (498)
T 1e8c_A 22 REMTLDSRVAAAGDLFVAVVGHQADGRRYI----PQAIAQGVA----AIIAEAKDEATDGEIREMHGVPVIYLSQLNERL 93 (498)
T ss_dssp CCEESCGGGCCTTCEEEECBCSSCBGGGGH----HHHHHTTCS----EEEEECTTTCCTTCEEEETTEEEEEETTHHHHH
T ss_pred eeEEeeCcCCCCCCEEEEecCCcCCHHHHH----HHHHHCCCe----EEEEcCccccccccccccCCccEEEECCHHHHH
Confidence 337899999999999999998776655322 444431000 00000000000 0 0 012336789999999
Q ss_pred HHhcCccccc--ccceEEEecCCCCCccHHHHHHHHHHHCCCCeEEEcCcccccccceeeeCCeecChhhhhhHHHHHHH
Q psy15432 708 GHLNITLDDI--KKLNVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTKYFWTVYN 785 (1255)
Q Consensus 708 ~~Lg~~~~~~--~~l~vIhVTGTnGKgST~aml~sILr~~G~rtGl~tSPhL~~~~ERI~InG~pIs~~~f~~~~~~v~~ 785 (1255)
+.|+..+++. .++++||||||||||||++|+++||+++|+++|+++|++ ..+|+..++.
T Consensus 94 ~~la~~~~~~p~~~~~vI~VTGTnGKTTT~~ml~~iL~~~g~~~~~~gs~~-------~~i~~~~~~~------------ 154 (498)
T 1e8c_A 94 SALAGRFYHEPSDNLRLVGVTGTNGKTTTTQLLAQWSQLLGEISAVMGTVG-------NGLLGKVIPT------------ 154 (498)
T ss_dssp HHHHHHHTTCGGGSSEEEEEESSSCHHHHHHHHHHHHHHTTCCEEEEETTE-------EEETTCCBCC------------
T ss_pred HHHHHHHhCCCcccCeEEEEeCCcChHHHHHHHHHHHHhCCCCEEEECCCC-------cccCCeeeec------------
Confidence 9985544331 468999999999999999999999999999999999997 5666665441
Q ss_pred HHHHHhhcCCCCCcHHHHHHHHH-HHhhhcCCCCEEEEeccc----CCccccccccCCCcEEEEcCCCchhhhhcCCCHH
Q psy15432 786 ALHAKRKHAEDMPAYFKFLTVMS-FYVFVKEKPDAVIMEVGI----GGRYDNTNIIPNTAVVGITSLGYDHTAVLGNTIE 860 (1255)
Q Consensus 786 ~l~~~~~~~~~~pt~Fe~lT~mA-f~~F~~~~vD~aVlEVG~----GGr~D~TNvi~~P~VavITnIg~DHl~~LG~Tle 860 (1255)
.+++|+.+|+++ |.+|.++++|++|||||+ +|++|.+| |+++|||||+.||+++|| |+|
T Consensus 155 -----------~~t~~~~~~l~~~l~~~~~~~~d~~VlEvgs~~l~~~rl~~~~----p~vaViTNI~~DHld~~g-t~e 218 (498)
T 1e8c_A 155 -----------ENTTGSAVDVQHELAGLVDQGATFCAMEVSSHGLVQHRVAALK----FAASVFTNLSRDHLDYHG-DME 218 (498)
T ss_dssp -----------SSSSCCHHHHHHHHHHHHHTTCCEEEEECCHHHHHTTTTTTCB----CSEEEECCCCSCCHHHHS-SHH
T ss_pred -----------CCCCCCHHHHHHHHHHHHhCCCCEEEEEcCCchhhcccccccC----CCEEEEeCCChhhhhccC-CHH
Confidence 256777788775 778889999999999997 57888865 799999999999999999 999
Q ss_pred HHHHHHhccccC--CceEEEccCCCChhHHHHHHHhhhcCCeEEEcCCc-------------------cceecc----CC
Q psy15432 861 EITMQKAGIMKP--NCIAVTSANQRGPCKQILLETSRALNCVLLEAPSI-------------------LNYRWR----GQ 915 (1255)
Q Consensus 861 eIA~~KagI~K~--g~~av~~~~qd~~~~~vl~~~A~~~~~~l~~~~~~-------------------~~~~~~----~~ 915 (1255)
+|+++|++||+. ++++|++. +++....++ +.+...+++++.++.. ..+.+. ..
T Consensus 219 ~ia~aK~~i~~~~~~~~~V~n~-dd~~~~~~~-~~~~~~~~~v~~~g~~~~~~~~d~~~~~~~~~~~g~~f~~~~~~~~~ 296 (498)
T 1e8c_A 219 HYEAAKWLLYSEHHCGQAIINA-DDEVGRRWL-AKLPDAVAVSMEDHINPNCHGRWLKATEVNYHDSGATIRFSSSWGDG 296 (498)
T ss_dssp HHHHHHHHHHHTSBCCEEEEET-TSHHHHHHH-TTCTTCEEEESSSCCCTTTCSEEEEEEEEEECSSCEEEEEEETTCCE
T ss_pred HHHHHHHHHhccCCCCeEEEEC-CCHHHHHHH-HhhhccCCcEEEEecCCCCCcCCEEEEEEEEcCCceEEEEEECCceE
Confidence 999999999985 77899987 444444433 3222222233333210 011111 12
Q ss_pred ccccCCCchhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHhhhhhcCCCCCCCCCCCCCCcCCCCCCCCCccccCCCC
Q psy15432 916 PLDEDWKSTVQSINISLAIQLAYLWMFRMNKSAELKSVIDKFLAEMRVSSPNETPGGQGHLSSCETPGGQGHLSFSETPG 995 (1255)
Q Consensus 916 ~v~l~L~G~hq~~Na~lAiala~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 995 (1255)
.+.++++|.||++|+++|++++..
T Consensus 297 ~~~l~l~G~hnv~NalaAia~~~~-------------------------------------------------------- 320 (498)
T 1e8c_A 297 EIESHLMGAFNVSNLLLALATLLA-------------------------------------------------------- 320 (498)
T ss_dssp EEEECSCSHHHHHHHHHHHHHHHH--------------------------------------------------------
T ss_pred EEEecCCcHHHHHHHHHHHHHHHH--------------------------------------------------------
Confidence 467899999999999999998876
Q ss_pred CCCCcccccccccCCCCCCCC-HHHHHHHhcCC-CCCcEEEEeec-CcEEEEEcCcCHHHHHHHHHHHHhhhccccCCCc
Q psy15432 996 GQGHLTGNQSSLLMGPHFEID-PKTYRGIKACV-WPGRVQVIRKN-NFKYFLDGAHTTDSIELCAKWFLRKSEAEANPTQ 1072 (1255)
Q Consensus 996 ~~~~~~~n~~~~~~~~~~~i~-~~i~~gL~~~~-~pGR~E~v~~~-~~~vilDgAHNP~S~~a~l~~l~~~~~~~~~~~~ 1072 (1255)
+|++ +.|.+||++++ ||||||++... ++++|+||||||+||++++++++...
T Consensus 321 -----------------lGi~~~~i~~~L~~~~~~~gR~e~v~~~~~~~vi~DyahnP~s~~a~l~~l~~~~-------- 375 (498)
T 1e8c_A 321 -----------------LGYPLADLLKTAARLQPVCGRMEVFTAPGKPTVVVDYAHTPDALEKALQAARLHC-------- 375 (498)
T ss_dssp -----------------TTCCHHHHHHHGGGCCCCTTSSEEECCTTSCEEEEECCCSHHHHHHHHHHHHHTC--------
T ss_pred -----------------cCCCHHHHHHHHHhCCCCCCceEEEEcCCCCEEEEECCCCHHHHHHHHHHHHhhC--------
Confidence 4666 67999999998 99999999865 66899999999999999999998642
Q ss_pred ccCCCCCcEEEEEecCCCCChh--hhhhhhhcCCCCcEEEEcCCCCcccccccCCCCCccccc-----ccccccCCHHHH
Q psy15432 1073 SKSSNVIQRILVFNVTGERDPT--KLLSPLLQSNQFEYILVTPNILTNEIRWRGQPLDEDWKS-----TVQSINISLAIQ 1145 (1255)
Q Consensus 1073 ~~~~~~~~~vlVfg~~~drD~~--~ll~~L~~~~~~d~vi~t~~~~~~~~~~~~~~~~~~~~~-----d~~~~~~~~~~~ 1145 (1255)
.+++++|||++++||.. .++..+ ....+|.+++++++++.+.... +...... .......+.++.
T Consensus 376 -----~~r~i~V~G~g~dr~~~~~~~~~~~-~~~~~d~vi~~~~~~r~e~~~~---i~~~~~~~~~~~~~~~~~~~~~~a 446 (498)
T 1e8c_A 376 -----AGKLWCVFGCGGDRDKGKRPLMGAI-AEEFADVAVVTDDNPRTEEPRA---IINDILAGMLDAGHAKVMEGRAEA 446 (498)
T ss_dssp -----SSCEEEEECCCSSSCSTHHHHHHHH-HHHHCSEEEECCSCCBTSCHHH---HHHHHHTTSSCGGGSEECSCHHHH
T ss_pred -----CCCEEEEECCCCCcchhHHHHHHHH-HHhCCCEEEEcCCCCCCCCHHH---HHHHHHhhccccCceEEECCHHHH
Confidence 14789999999998863 344444 3345899999998875443211 0000000 011234588999
Q ss_pred HHHHHHHcCCCceEEeecCCCC
Q psy15432 1146 LAYLWMFRMNKSAELKRNQSSL 1167 (1255)
Q Consensus 1146 ~~~~~~~~~~~~~~l~~~~~~~ 1167 (1255)
++.+.....+.+++|++|+.+.
T Consensus 447 i~~a~~~a~~gd~VLv~GkG~~ 468 (498)
T 1e8c_A 447 VTCAVMQAKENDVVLVAGKGHE 468 (498)
T ss_dssp HHHHHHHSCTTCEEEEESCTTC
T ss_pred HHHHHHhCCCCCEEEEecCCCc
Confidence 9999888889999999887654
|
| >1gg4_A UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanyl ligase...; alpha/beta sheet; 2.30A {Escherichia coli} SCOP: c.98.1.1 c.59.1.1 c.72.2.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-45 Score=439.39 Aligned_cols=383 Identities=14% Similarity=0.110 Sum_probs=274.1
Q ss_pred EEEecccccccccceeeccCCCCCCCCCCcccHHHHHHHHHhcchhHHHHHHhhccCCcccccccchHHHHHHHHHhcCc
Q psy15432 634 ILVTGSLHLVGAFLNVLITPHASRSNKEIPQSYVDAIKQLNTLQSNIRTIRESKLRKDPVEMQAVQVDQVVQYLGHLNIT 713 (1255)
Q Consensus 634 vlvtGSlhLVGgvL~~l~~~ha~~~~~~~~~~y~~a~~~L~~lqsn~~~l~~~~~~g~~~~~~~~~v~~~~~~L~~Lg~~ 713 (1255)
=+++.|+.+..|.|++...+..+..+.-. ++|++. ... .. +..++.+.+.+.+.+++++++|++|+.+
T Consensus 26 ~i~~Dsr~v~~g~lf~al~G~~~dgh~f~----~~a~~~--Ga~---~v---v~~~~~~~~~p~i~v~~~~~~l~~la~~ 93 (452)
T 1gg4_A 26 AVTTDTRKLTPGCLFVALKGERFDAHDFA----DQAKAG--GAG---AL---LVSRPLDIDLPQLIVKDTRLAFGELAAW 93 (452)
T ss_dssp CEESCGGGCCTTCEEECCBCSSCBTTTTH----HHHHHT--TCC---EE---EESSCCSCSSCEEEESCHHHHHHHHHHH
T ss_pred EEEEeCCCcCCCcEEEEeCCCCCCHHHHH----HHHHHc--CCE---EE---EECCCcCCCCCEEEECCHHHHHHHHHHH
Confidence 37899999999999988776655444321 344431 000 00 0011211112346789999999999999
Q ss_pred ccccccceEEEecCCCCCccHHHHHHHHHHHCCCCeEEEcCcccccccceeeeCCeecChhhhhhHHHHHHHHHHHHhhc
Q psy15432 714 LDDIKKLNVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTKYFWTVYNALHAKRKH 793 (1255)
Q Consensus 714 ~~~~~~l~vIhVTGTnGKgST~aml~sILr~~G~rtGl~tSPhL~~~~ERI~InG~pIs~~~f~~~~~~v~~~l~~~~~~ 793 (1255)
++...++++||||||||||||++|+++||+++| +++ +++ . ++|++| |.|++
T Consensus 94 ~~~~~~~~vI~VTGTnGKTTT~~~l~~iL~~~g-~~~-~t~-g--~~n~~i---g~p~t--------------------- 144 (452)
T 1gg4_A 94 VRQQVPARVVALTGSSGKTSVKEMTAAILSQCG-NTL-YTA-G--NLNNDI---GVPMT--------------------- 144 (452)
T ss_dssp HHHHSCCEEEEEECSSCHHHHHHHHHHHHTTTS-CEE-ECC-T--TCCSTT---HHHHH---------------------
T ss_pred HhcCCCCCEEEEeCCCCcHHHHHHHHHHHHhcC-CEe-ecc-c--cccCCc---chhHH---------------------
Confidence 876557899999999999999999999999999 555 544 3 777877 33311
Q ss_pred CCCCCcHHHHHHHHHHHhhhcCCCCEEEEecccCCccc---cccccCCCcEEEEcCCCchhhhhcCCCHHHHHHHHhccc
Q psy15432 794 AEDMPAYFKFLTVMSFYVFVKEKPDAVIMEVGIGGRYD---NTNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIM 870 (1255)
Q Consensus 794 ~~~~pt~Fe~lT~mAf~~F~~~~vD~aVlEVG~GGr~D---~TNvi~~P~VavITnIg~DHl~~LG~TleeIA~~KagI~ 870 (1255)
+|+ .+.++|++|+|||++|+.| .+|++ +|+++|||||+.||+++|| |+|+|+++|++||
T Consensus 145 ------~~~----------~~~~~d~~VlE~g~~~~~~~~~~~~~~-~p~vaviTNI~~DHld~~g-t~e~~~~aK~~i~ 206 (452)
T 1gg4_A 145 ------LLR----------LTPEYDYAVIELGANHQGEIAWTVSLT-RPEAALVNNLAAAHLEGFG-SLAGVAKAKGEIF 206 (452)
T ss_dssp ------HTT----------CCTTCSEEEEECCCSSSSHHHHHHHHH-CCSEEEECCCC---------CHHHHHHHHHGGG
T ss_pred ------HHc----------CCCCCcEEEEEeCCCCcchHHHHhCcc-CCCEEEECCCChHHhhhcC-CHHHHHHHHHHHH
Confidence 111 3578999999999999988 78877 6999999999999999999 9999999999999
Q ss_pred c---CCceEEEccCCCChhHHHHHHHhhhcCCeEEEcCCcc---c--------------eecc--C--CccccCCCchhH
Q psy15432 871 K---PNCIAVTSANQRGPCKQILLETSRALNCVLLEAPSIL---N--------------YRWR--G--QPLDEDWKSTVQ 926 (1255)
Q Consensus 871 K---~g~~av~~~~qd~~~~~vl~~~A~~~~~~l~~~~~~~---~--------------~~~~--~--~~v~l~L~G~hq 926 (1255)
+ +++++|++. +++....++ + +.. +++++.++... + +.+. + ..+.++++|.||
T Consensus 207 ~~~~~~~~~V~n~-dd~~~~~~~-~-~~~-~~~~~~~g~~~~~~d~~~~~~~~~~~g~~~~~~~~~~~~~~~l~l~G~hn 282 (452)
T 1gg4_A 207 SGLPENGIAIMNA-DNNDWLNWQ-S-VIG-SRKVWRFSPNAANSDFTATNIHVTSHGTEFTLQTPTGSVDVLLPLPGRHN 282 (452)
T ss_dssp GGCCTTCEEEEET-TBCCHHHHH-H-HHT-TSEEEEECSSCTTCSBEEEEEEECSSSEEEEEEETTEEEEEEECSSSTHH
T ss_pred hhcccCCEEEEeC-CcHHHHHHH-H-hhc-CCCEEEEeCCCCCCcEEEEEEEEcCCceEEEEEECCCEEEEEeCCCcHHH
Confidence 7 788999998 555554443 2 222 45555554210 1 1111 1 146789999999
Q ss_pred HHHHHHHHHHHHHHHHhhcchhhhhhHHHHHhhhhhcCCCCCCCCCCCCCCcCCCCCCCCCccccCCCCCCCCccccccc
Q psy15432 927 SINISLAIQLAYLWMFRMNKSAELKSVIDKFLAEMRVSSPNETPGGQGHLSSCETPGGQGHLSFSETPGGQGHLTGNQSS 1006 (1255)
Q Consensus 927 ~~Na~lAiala~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~ 1006 (1255)
++|+++|++++..
T Consensus 283 ~~NalaA~a~~~~------------------------------------------------------------------- 295 (452)
T 1gg4_A 283 IANALAAAALSMS------------------------------------------------------------------- 295 (452)
T ss_dssp HHHHHHHHHHHHH-------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHH-------------------------------------------------------------------
Confidence 9999999998876
Q ss_pred ccCCCCCCCC-HHHHHHHhcCC-CCCcEEEEeec-CcEEEEE-cCcCHHHHHHHHHHHHhhhccccCCCcccCCCCCcEE
Q psy15432 1007 LLMGPHFEID-PKTYRGIKACV-WPGRVQVIRKN-NFKYFLD-GAHTTDSIELCAKWFLRKSEAEANPTQSKSSNVIQRI 1082 (1255)
Q Consensus 1007 ~~~~~~~~i~-~~i~~gL~~~~-~pGR~E~v~~~-~~~vilD-gAHNP~S~~a~l~~l~~~~~~~~~~~~~~~~~~~~~v 1082 (1255)
+|++ +.+.+||++++ ||||||++... +.++|+| |||||+|+++++++++... ++++
T Consensus 296 ------lgi~~~~i~~~L~~~~~~~gR~e~~~~~~~~~vidDsyahnp~s~~~~l~~l~~~~--------------~~~i 355 (452)
T 1gg4_A 296 ------VGATLDAIKAGLANLKAVPGRLFPIQLAENQLLLDDSYNANVGSMTAAVQVLAEMP--------------GYRV 355 (452)
T ss_dssp ------TTCCHHHHHHHHTTCCCCTTSSEEEEEETTEEEEECCSCCCHHHHHHHHHHHHHSS--------------SEEE
T ss_pred ------cCCCHHHHHHHHHhCCCCCCCceEEECCCCcEEEEeCCCCCHHHHHHHHHHHHhcc--------------CCEE
Confidence 4677 67999999997 99999999864 5778888 9999999999999998631 4689
Q ss_pred EEEecCC---C---CChhhhhhhhhcCCCCcEEEEcCCCCcccccccCCCCCcccccccccccCCHHHHHHHHHHHcCC-
Q psy15432 1083 LVFNVTG---E---RDPTKLLSPLLQSNQFEYILVTPNILTNEIRWRGQPLDEDWKSTVQSINISLAIQLAYLWMFRMN- 1155 (1255)
Q Consensus 1083 lVfg~~~---d---rD~~~ll~~L~~~~~~d~vi~t~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~- 1155 (1255)
+|||++. + ++...|.+.+ ....+|.+++++..+....... .. ..+..+.++.++.+.....+
T Consensus 356 ~V~G~~~e~g~~~~~~~~~~~~~~-~~~~~d~vi~~g~~~~~i~~~~--------~~--~~~~~~~~~ai~~a~~~~~~~ 424 (452)
T 1gg4_A 356 LVVGDMAELGAESEACHVQVGEAA-KAAGIDRVLSVGKQSHAISTAS--------GV--GEHFADKTALITRLKLLIAEQ 424 (452)
T ss_dssp EEECCCCCCTTHHHHHHHHHHHHH-HHHTCSEEEEESSSTHHHHHHT--------TS--CEEESSHHHHHHHHHHHHHHC
T ss_pred EEECCccccCChhHHHHHHHHHHH-HHcCCCEEEEECcCHHHHHHHh--------hc--CceeCCHHHHHHHHHHhhccc
Confidence 9999983 3 3334455555 3336899999986654322211 11 12446889999888887777
Q ss_pred -CceEEeecCCCCCCcccccccc
Q psy15432 1156 -KSAELKRNQSSLPMGPHFEIDP 1177 (1255)
Q Consensus 1156 -~~~~l~~~~~~~~~~~~~~~~~ 1177 (1255)
.+++|++||+++.|+++++.|.
T Consensus 425 ~gd~VLv~GS~~~~~e~i~~~l~ 447 (452)
T 1gg4_A 425 QVITILVKGSRSAAMEEVVRALQ 447 (452)
T ss_dssp SSEEEEEECCGGGTTHHHHHHHC
T ss_pred CCcEEEEEcCCcCCHHHHHHHHH
Confidence 8999999999999999998875
|
| >2wtz_A UDP-N-acetylmuramoyl-L-alanyl-D-glutamate- -2,6-diaminopimelate ligase; nucleotide-binding, peptidoglycan synthesis, MURE, C shape; HET: KCX UAG; 3.00A {Mycobacterium tuberculosis} PDB: 2xja_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-44 Score=440.79 Aligned_cols=395 Identities=18% Similarity=0.199 Sum_probs=284.8
Q ss_pred ceEEEecccccccccceeeccCCCCCCCCCCcccHHHHHHHHHh--cchhHHHHHHhhcc-CCcccccccchHHHHHHHH
Q psy15432 632 YHILVTGSLHLVGAFLNVLITPHASRSNKEIPQSYVDAIKQLNT--LQSNIRTIRESKLR-KDPVEMQAVQVDQVVQYLG 708 (1255)
Q Consensus 632 ~~vlvtGSlhLVGgvL~~l~~~ha~~~~~~~~~~y~~a~~~L~~--lqsn~~~l~~~~~~-g~~~~~~~~~v~~~~~~L~ 708 (1255)
+.=+.+.|+.+..|.|++...+..+..+.-+ ++|++.=-. +.+. ......... +. +...+++++++|+
T Consensus 62 i~~v~~DSR~v~~g~lFval~G~~~dGh~fi----~~A~~~GA~avv~~~-~~~~~~~~~~~~----~~i~v~d~~~aL~ 132 (535)
T 2wtz_A 62 VTGVTLRAQDVSPGDLFAALTGSTTHGARHV----GDAIARGAVAVLTDP-AGVAEIAGRAAV----PVLVHPAPRGVLG 132 (535)
T ss_dssp CCEEESCGGGCCTTEEEEECBCSSCBGGGGH----HHHHHTTCCEEEECH-HHHHHHCSCCSS----CEEECSSSHHHHH
T ss_pred eeeEEecCCcCCCCCEEEEeccccccHHHHH----HHHHHCCCeEEEEec-CcccccccCCCc----eEEEECCHHHHHH
Confidence 4448899999999999999987766544322 444431000 1110 000001001 22 2367889999999
Q ss_pred HhcCccccc--ccceEEEecCCCCCccHHHHHHHHHHHCCCCeEEEcCcccccccceeeeCCeecChhhhhhHHHHHHHH
Q psy15432 709 HLNITLDDI--KKLNVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTKYFWTVYNA 786 (1255)
Q Consensus 709 ~Lg~~~~~~--~~l~vIhVTGTnGKgST~aml~sILr~~G~rtGl~tSPhL~~~~ERI~InG~pIs~~~f~~~~~~v~~~ 786 (1255)
.|+...++. .++++||||||||||||++||++||+++|+++|+++|. ++.+||.+++..
T Consensus 133 ~la~~~~~~p~~~~~vI~VTGTnGKTTT~~ml~~iL~~~G~~~g~~gs~-------~~~i~~~~~~~~------------ 193 (535)
T 2wtz_A 133 GLAATVYGHPSERLTVIGITGTSGKTTTTYLVEAGLRAAGRVAGLIGTI-------GIRVGGADLPSA------------ 193 (535)
T ss_dssp HHHHHHTTCGGGSSEEEEEESSSCHHHHHHHHHHHHHHTTCCEEEESSS-------CEEETTEEECCS------------
T ss_pred HHHHHHhcCccccceEEEeeCCCChHHHHHHHHHHHHHCCCCEEEECCc-------ceeECCEecccC------------
Confidence 885443332 36899999999999999999999999999999999984 588999887744
Q ss_pred HHHHhhcCCCCCcHHHHHHHHHH-HhhhcCCCCEEEEeccc----CCccccccccCCCcEEEEcCCCchhhhhcCCCHHH
Q psy15432 787 LHAKRKHAEDMPAYFKFLTVMSF-YVFVKEKPDAVIMEVGI----GGRYDNTNIIPNTAVVGITSLGYDHTAVLGNTIEE 861 (1255)
Q Consensus 787 l~~~~~~~~~~pt~Fe~lT~mAf-~~F~~~~vD~aVlEVG~----GGr~D~TNvi~~P~VavITnIg~DHl~~LG~Tlee 861 (1255)
+++|+.+++.++ ..|.++++|++|||||+ +|++|.+ +|+++|||||+.||+++|| |+|+
T Consensus 194 -----------~tt~e~~~l~~~l~~~~~~~~d~~VlEvgs~~l~~~rl~~~----~p~vaViTNI~~DHld~~g-s~e~ 257 (535)
T 2wtz_A 194 -----------LTTPEAPTLQAMLAAMVERGVDTVVMEVSSHALALGRVDGT----RFAVGAFTNLSRDHLDFHP-SMAD 257 (535)
T ss_dssp -----------SSSCCHHHHHHHHHHHHHTTCCEEEEECCHHHHHTTTTTTC----CEEEEEECCCCSCCTTTSS-SHHH
T ss_pred -----------CccCcHHHHHHHHHHHHhCCCCEEEEECCCccccccccccC----CcCEEEEcCCChHHhhhcC-CHHH
Confidence 345667777776 46789999999999997 4788875 4899999999999999999 9999
Q ss_pred HHHHHhccccC-----CceEEEccCCCChhHHHHHHHhhhcCCeEEEcC------------------Cccceecc---C-
Q psy15432 862 ITMQKAGIMKP-----NCIAVTSANQRGPCKQILLETSRALNCVLLEAP------------------SILNYRWR---G- 914 (1255)
Q Consensus 862 IA~~KagI~K~-----g~~av~~~~qd~~~~~vl~~~A~~~~~~l~~~~------------------~~~~~~~~---~- 914 (1255)
|+++|++||++ ++.+|++. +++....++ +.+. +++.++ ....+.+. +
T Consensus 258 ia~aK~~i~~~~~~~~~g~~Vln~-Dd~~~~~~~-~~~~----~v~~~g~~~~~~d~~~~~i~~~~~~g~~f~~~~~~~~ 331 (535)
T 2wtz_A 258 YFEAKASLFDPDSALRARTAVVCI-DDDAGRAMA-ARAA----DAITVSAADRPAHWRATDVAPTDAGGQQFTAIDPAGV 331 (535)
T ss_dssp HHHHHHTTTCTTSTTCCSEEEEEC-SSHHHHHHH-HHHS----SCEEEESSSSCCSEEEEEEEEETTTEEEEEEECTTSC
T ss_pred HHHHHHHHhccccccCCCeEEEEC-CCHHHHHHH-HhcC----CEEEEecCCCcCcEEEEEEEEcCCCCeEEEEEeCCce
Confidence 99999999984 45788887 444334433 3332 111111 00112221 1
Q ss_pred -CccccCCCchhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHhhhhhcCCCCCCCCCCCCCCcCCCCCCCCCccccCC
Q psy15432 915 -QPLDEDWKSTVQSINISLAIQLAYLWMFRMNKSAELKSVIDKFLAEMRVSSPNETPGGQGHLSSCETPGGQGHLSFSET 993 (1255)
Q Consensus 915 -~~v~l~L~G~hq~~Na~lAiala~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 993 (1255)
..+.++++|.||++|+++|++++..
T Consensus 332 ~~~~~l~l~G~hnv~NalaAia~a~~------------------------------------------------------ 357 (535)
T 2wtz_A 332 GHHIGIRLPGRYNVANCLVALAILDT------------------------------------------------------ 357 (535)
T ss_dssp EEEEEESCCSHHHHHHHHHHHHHHHH------------------------------------------------------
T ss_pred EEEEEeCCCCHHHHHHHHHHHHHHHH------------------------------------------------------
Confidence 2477899999999999999998876
Q ss_pred CCCCCCcccccccccCCCCCCCC-HHHHHHHhcCCCCCcEEEEeec-CcEEEEEcCcCHHHHHHHHHHHHhhhccccCCC
Q psy15432 994 PGGQGHLTGNQSSLLMGPHFEID-PKTYRGIKACVWPGRVQVIRKN-NFKYFLDGAHTTDSIELCAKWFLRKSEAEANPT 1071 (1255)
Q Consensus 994 ~~~~~~~~~n~~~~~~~~~~~i~-~~i~~gL~~~~~pGR~E~v~~~-~~~vilDgAHNP~S~~a~l~~l~~~~~~~~~~~ 1071 (1255)
+|++ +.|.+||++++||||||++... +.++|+||||||+||++++++++ ..
T Consensus 358 -------------------lGi~~~~i~~~L~~~~~~gR~e~v~~~~~~~viiDyahNP~s~~aal~~l~-~~------- 410 (535)
T 2wtz_A 358 -------------------VGVSPEQAVPGLREIRVPGRLEQIDRGQGFLALVDYAHKPEALRSVLTTLA-HP------- 410 (535)
T ss_dssp -------------------TTCCHHHHHHHHTTCCCTTSSEECCSSCSSEEEEECCCSHHHHHHHHHTTC-CS-------
T ss_pred -------------------cCCCHHHHHHHHHhCCCCCceEEEEcCCCcEEEEECCCCHHHHHHHHHHhh-CC-------
Confidence 4677 6799999999999999999865 66799999999999999999987 32
Q ss_pred cccCCCCCcEEEEEecCCCCChhh--hhhhhhcCCCCcEEEEcCCCCcccccccCCCCCcc----ccc----ccccccCC
Q psy15432 1072 QSKSSNVIQRILVFNVTGERDPTK--LLSPLLQSNQFEYILVTPNILTNEIRWRGQPLDED----WKS----TVQSINIS 1141 (1255)
Q Consensus 1072 ~~~~~~~~~~vlVfg~~~drD~~~--ll~~L~~~~~~d~vi~t~~~~~~~~~~~~~~~~~~----~~~----d~~~~~~~ 1141 (1255)
.+++++|||+++|||... ++..+ ....+|.+++++++++.+.... +... ... ....+..+
T Consensus 411 ------~~r~i~V~G~~gdr~~~~~~~~~~~-a~~~~d~vi~~~~~~r~e~~~~---i~~~i~~g~~~~~~~~~~~~~~d 480 (535)
T 2wtz_A 411 ------DRRLAVVFGAGGDRDPGKRAPMGRI-AAQLADLVVVTDDNPRDEDPTA---IRREILAGAAEVGGDAQVVEIAD 480 (535)
T ss_dssp ------SSCEEEEECCCTTSCGGGHHHHHHH-HHHHCSEEEECCSCCTTSCHHH---HHHHHHHHHTTCC-CCEEEECCS
T ss_pred ------CCcEEEEECCCCccchhhHHHHHHH-HHhcCCEEEEcCCCCCCCCHHH---HHHHHHhhhhhcCCCCcEEEECC
Confidence 147899999999998664 33333 2335899999998876443211 0000 000 01123458
Q ss_pred HHHHHHHHHHHcCCCceEEeecCCCC
Q psy15432 1142 LAIQLAYLWMFRMNKSAELKRNQSSL 1167 (1255)
Q Consensus 1142 ~~~~~~~~~~~~~~~~~~l~~~~~~~ 1167 (1255)
.++.++.+.....+.+++|++|+...
T Consensus 481 ~~~Ai~~a~~~a~~gD~VLv~GsGhe 506 (535)
T 2wtz_A 481 RRDAIRHAVAWARPGDVVLIAGKGHE 506 (535)
T ss_dssp HHHHHHHHHHHCCTTCEEEEESCTTC
T ss_pred HHHHHHHHHHhCCCCCEEEEEeCCCc
Confidence 89999999998899999999999764
|
| >2am1_A SP protein, UDP-N-acetylmuramoylalanine-D-glutamyl-lysine-D-A alanine ligase, MURF protein; HET: 1LG; 2.50A {Streptococcus pneumoniae} PDB: 2am2_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-45 Score=435.78 Aligned_cols=388 Identities=12% Similarity=0.087 Sum_probs=279.8
Q ss_pred ceEEEecccccccccceeeccCCCCCCCCCCcccH-HHHHHHHHhcchhHHHHHHhhccCCcccccccchHHHHHHHHHh
Q psy15432 632 YHILVTGSLHLVGAFLNVLITPHASRSNKEIPQSY-VDAIKQLNTLQSNIRTIRESKLRKDPVEMQAVQVDQVVQYLGHL 710 (1255)
Q Consensus 632 ~~vlvtGSlhLVGgvL~~l~~~ha~~~~~~~~~~y-~~a~~~L~~lqsn~~~l~~~~~~g~~~~~~~~~v~~~~~~L~~L 710 (1255)
+.=+++.|+.+..|.|++...+. +..+. | ++|++. ... .. +..++.+ +.+...+++++++|+.|
T Consensus 26 i~~i~~Dsr~v~~g~lF~al~G~-~dgh~-----~~~~a~~~--Ga~---~v---v~~~~~~-~~p~i~v~~~~~al~~l 90 (454)
T 2am1_A 26 LEKAEFDSRLIGTGDLFVPLKGA-RDGHD-----FIETAFEN--GAA---VT---LSEKEVS-NHPYILVDDVLTAFQSL 90 (454)
T ss_dssp CCCEESCGGGCCTTCEECCCBSS-SBGGG-----GHHHHHHH--TCS---EE---EESSCCC-SSCEEECSCHHHHHHHH
T ss_pred eeeEEEeCCCCCCCCEEEEccCC-cchHH-----HHHHHHHC--CCE---EE---EECCCCC-CCCEEEECCHHHHHHHH
Confidence 34478999999999999887765 44332 3 344431 000 00 0011211 22346789999999999
Q ss_pred cCcccccccceEEEecCCCCCccHHHHHHHHHHHCCCCeEEEcCcccccccceeeeCCeecChhhhhhHHHHHHHHHHHH
Q psy15432 711 NITLDDIKKLNVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTKYFWTVYNALHAK 790 (1255)
Q Consensus 711 g~~~~~~~~l~vIhVTGTnGKgST~aml~sILr~~G~rtGl~tSPhL~~~~ERI~InG~pIs~~~f~~~~~~v~~~l~~~ 790 (1255)
+.+++...++++||||||||||||++|+++||+++|+ .++||| ++|++| |.|+
T Consensus 91 a~~~~~~~~~~vI~VTGTnGKTTT~~~l~~iL~~~g~---~~~s~g--~~n~~i---g~p~------------------- 143 (454)
T 2am1_A 91 ASYYLEKTTVDVFAVTGSNGKTTTKDMLAHLLSTRYK---TYKTQG--NYNNEI---GLPY------------------- 143 (454)
T ss_dssp HHHHHHHHCCEEEEEECCCSSSCHHHHHHHHHTTTSC---EEECCT--TCCSTT---HHHH-------------------
T ss_pred HHHHhhCCCCCEEEEeCCCCcHHHHHHHHHHHHhcCC---EeecCC--ccCccc---chHH-------------------
Confidence 9988765578999999999999999999999999995 478998 888887 3331
Q ss_pred hhcCCCCCcHHHHHHHHHHHhhhcCCCCEEEEecccCCccc---cccccCCCcEEEEcCCCchhhhhcCCCHHHHHHHHh
Q psy15432 791 RKHAEDMPAYFKFLTVMSFYVFVKEKPDAVIMEVGIGGRYD---NTNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKA 867 (1255)
Q Consensus 791 ~~~~~~~pt~Fe~lT~mAf~~F~~~~vD~aVlEVG~GGr~D---~TNvi~~P~VavITnIg~DHl~~LG~TleeIA~~Ka 867 (1255)
++|+ .++++|++|||||++|+.| .+|++ +|+++|||||+.||+++|| |+|+|+++|+
T Consensus 144 --------t~~~----------~~~~~d~~VlE~g~~~~~~~~~~~~~~-~p~vaviTNi~~DHld~~g-t~e~~a~aK~ 203 (454)
T 2am1_A 144 --------TVLH----------MPEGTEKLVLEMGQDHLGDIHLLSELA-RPKTAIVTLVGEAHLAFFK-DRSEIAKGKM 203 (454)
T ss_dssp --------HHHT----------CCTTCCEEEEECCCSSTTHHHHHHHHH-CCSEEEECCCCCSSCTTCC-CHHHHHHHHG
T ss_pred --------HHhc----------CCCCCcEEEEEcCCCCcchHHHHhCcc-CCCEEEEcCCchHhhhhcC-CHHHHHHHHH
Confidence 1121 3678999999999999888 88877 6999999999999999999 9999999999
Q ss_pred cccc---CCceEEEccCCCChhHHHHHHHhhhcCCeEEEcCCcc--------------ceecc--CCccccCCCchhHHH
Q psy15432 868 GIMK---PNCIAVTSANQRGPCKQILLETSRALNCVLLEAPSIL--------------NYRWR--GQPLDEDWKSTVQSI 928 (1255)
Q Consensus 868 gI~K---~g~~av~~~~qd~~~~~vl~~~A~~~~~~l~~~~~~~--------------~~~~~--~~~v~l~L~G~hq~~ 928 (1255)
+||+ +++++|++. + + ... +.+.. +++++.++... .+.+. +..+.++++|.||++
T Consensus 204 ~i~~~~~~~~~~V~n~-d-d-~~~---~~~~~-~~~~~~~g~~~~~d~~~i~~~~~~~~~~~~~~~~~~~l~l~G~hn~~ 276 (454)
T 2am1_A 204 QIADGMASGSLLLAPA-D-P-IVE---DYLPI-DKKVVRFGQGAELEITDLVERKDSLTFKANFLEQALDLPVTGKYNAT 276 (454)
T ss_dssp GGGTTCCTTCEEEEES-C-G-GGG---GGCCS-SSEEEEESTTSSBCEEEEEECSSCEEEEETTCSSEEEESSCCHHHHH
T ss_pred HHHhhcccCCEEEEEc-H-H-HHH---HHHhc-CCcEEEEeCCCCCceeeeEEeCCceEEEEEecCcEEEecCCCHHHHH
Confidence 9998 678899987 3 3 332 22322 45555554210 11111 114778999999999
Q ss_pred HHHHHHHHHHHHHHhhcchhhhhhHHHHHhhhhhcCCCCCCCCCCCCCCcCCCCCCCCCccccCCCCCCCCccccccccc
Q psy15432 929 NISLAIQLAYLWMFRMNKSAELKSVIDKFLAEMRVSSPNETPGGQGHLSSCETPGGQGHLSFSETPGGQGHLTGNQSSLL 1008 (1255)
Q Consensus 929 Na~lAiala~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~ 1008 (1255)
|+++|++++..
T Consensus 277 NalaA~a~~~~--------------------------------------------------------------------- 287 (454)
T 2am1_A 277 NAMIASYVALQ--------------------------------------------------------------------- 287 (454)
T ss_dssp HHHHHHHHHHH---------------------------------------------------------------------
T ss_pred HHHHHHHHHHH---------------------------------------------------------------------
Confidence 99999998876
Q ss_pred CCCCCCCC-HHHHHHHhcCC-CCCcEEEEeec-CcEEEEE-cCcCHHHHHHHHHHHHhhhccccCCCcccCCCCCcEEEE
Q psy15432 1009 MGPHFEID-PKTYRGIKACV-WPGRVQVIRKN-NFKYFLD-GAHTTDSIELCAKWFLRKSEAEANPTQSKSSNVIQRILV 1084 (1255)
Q Consensus 1009 ~~~~~~i~-~~i~~gL~~~~-~pGR~E~v~~~-~~~vilD-gAHNP~S~~a~l~~l~~~~~~~~~~~~~~~~~~~~~vlV 1084 (1255)
+|++ +.+.+||++++ ||||||++... +.+||.| |||||+|+++++++++..... .++++++|
T Consensus 288 ----lgi~~~~i~~~L~~~~~~~gR~e~~~~~~~~~iiDDsyahnp~s~~~~l~~l~~~~~~----------~~~~~i~V 353 (454)
T 2am1_A 288 ----EGVSEEQIRLAFQHLELTRNRTEWKKAANGADILSDVYNANPTAMKLILETFSAIPAN----------EGGKKIAV 353 (454)
T ss_dssp ----TTCCHHHHHHHGGGCCCCCCCSCEECCTTTCEEEEECSCCSHHHHHHHHHHHTTSCCC----------SSCEEEEE
T ss_pred ----cCCCHHHHHHHHHhCCCccCCeeEEECCCCeEEEEeCCCCCHHHHHHHHHHHHhcccc----------cCCCEEEE
Confidence 4666 67999999999 99999999864 5665555 999999999999999764200 01468999
Q ss_pred EecCC---CC---ChhhhhhhhhcCCCCcEEEEcCCCCcccccccCCCCCccccccc-cc-----ccCCHHHHHHHHHHH
Q psy15432 1085 FNVTG---ER---DPTKLLSPLLQSNQFEYILVTPNILTNEIRWRGQPLDEDWKSTV-QS-----INISLAIQLAYLWMF 1152 (1255)
Q Consensus 1085 fg~~~---dr---D~~~ll~~L~~~~~~d~vi~t~~~~~~~~~~~~~~~~~~~~~d~-~~-----~~~~~~~~~~~~~~~ 1152 (1255)
||++. ++ +...|.+.+ ....+|.++++++.+....... ........ .. ...+.++.++.+...
T Consensus 354 ~G~~~e~G~~~~~~~~~~~~~~-~~~~~d~vi~~g~~~~~i~~~~----~~~~~~~~~~~~~~~~~~~~~~~ai~~a~~~ 428 (454)
T 2am1_A 354 LADMKELGDQSVQLHNQMILSL-SPDVLDIVIFYGEDIAQLAQLA----SQMFPIGHVYYFKKTEDQDQFEDLVKQVKES 428 (454)
T ss_dssp EECCCCCCTTHHHHHHHGGGGC-CTTTCSEEEEEESTTHHHHHHH----HHHSCTTCEEEEEBSSSCBTHHHHHHHHHHH
T ss_pred ECCchhcCcHHHHHHHHHHHHH-HhcCCCEEEEECcCHHHHHHHH----hhccccCcceeeecccCCCCHHHHHHHHHHh
Confidence 99973 32 233455555 3445899999987654322110 00000000 01 224889999999999
Q ss_pred cCCCceEEeecCCCCCCccccccc
Q psy15432 1153 RMNKSAELKRNQSSLPMGPHFEID 1176 (1255)
Q Consensus 1153 ~~~~~~~l~~~~~~~~~~~~~~~~ 1176 (1255)
..+.+++|++||+++.|+++++.|
T Consensus 429 a~~gd~VLv~GS~~~~~e~~~~~l 452 (454)
T 2am1_A 429 LGAHDQILLKGSNSMNLAKLVESL 452 (454)
T ss_dssp CCTTEEEEEESSCCHHHHHHHHHH
T ss_pred CCCCCEEEEEeCCcCCHHHHHHHH
Confidence 999999999999999999988765
|
| >1gg4_A UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanyl ligase...; alpha/beta sheet; 2.30A {Escherichia coli} SCOP: c.98.1.1 c.59.1.1 c.72.2.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=9.2e-45 Score=433.07 Aligned_cols=334 Identities=16% Similarity=0.138 Sum_probs=239.6
Q ss_pred eccccccccccccCCCceeEeecccccCCcccccccCCCCCCCcHHHHHHHHHhcchhHHHHHhhhcCCCcccccccchH
Q psy15432 10 KELKLNKDAHRKTLPDKTEVHHGGYKHGAVTPHASRSNKEIPQSYVDAIKQLNTLQSNIRTIRESKLRKDPVEMQAVQVD 89 (1255)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~eai~~L~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 89 (1255)
.+++.+..+||++.|+.+||+.+|.+.+++.|..+...+....- +.+. .+. .+.| .+.++
T Consensus 22 ~~i~~i~~Dsr~v~~g~lf~al~G~~~dgh~f~~~a~~~Ga~~v----------v~~~-----~~~-~~~p----~i~v~ 81 (452)
T 1gg4_A 22 ITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKAGGAGAL----------LVSR-----PLD-IDLP----QLIVK 81 (452)
T ss_dssp CEESCEESCGGGCCTTCEEECCBCSSCBTTTTHHHHHHTTCCEE----------EESS-----CCS-CSSC----EEEES
T ss_pred ceEEEEEEeCCCcCCCcEEEEeCCCCCCHHHHHHHHHHcCCEEE----------EECC-----CcC-CCCC----EEEEC
Confidence 46888999999999999999999998888776433222111000 0000 000 0112 26789
Q ss_pred HHHHHHHHhcCCccCCCCccEEEEcCCCChhHHHHHHHHHHHHCCCCeEEEcCCcccccceeEEeCCeecChhhhhhHHH
Q psy15432 90 QVVQYLGHLNITLDDIKKLNVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTKYFW 169 (1255)
Q Consensus 90 ~~~~~L~~Lg~~~~~~~~l~vIhVtGTnGKgST~a~l~sIL~~~G~k~Gl~tSPhL~~~rERI~InG~~is~~~ft~~~~ 169 (1255)
+++++|++|+.++++..++++||||||||||||++|+++||+++| +++ +|+. +++++|. .|
T Consensus 82 ~~~~~l~~la~~~~~~~~~~vI~VTGTnGKTTT~~~l~~iL~~~g-~~~-~t~g---~~n~~ig---~p----------- 142 (452)
T 1gg4_A 82 DTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEMTAAILSQCG-NTL-YTAG---NLNNDIG---VP----------- 142 (452)
T ss_dssp CHHHHHHHHHHHHHHHSCCEEEEEECSSCHHHHHHHHHHHHTTTS-CEE-ECCT---TCCSTTH---HH-----------
T ss_pred CHHHHHHHHHHHHhcCCCCCEEEEeCCCCcHHHHHHHHHHHHhcC-CEe-eccc---cccCCcc---hh-----------
Confidence 999999999999876567899999999999999999999999999 565 5542 4555541 11
Q ss_pred HHHHHHHhhhhccCCcchHHHHHHHHhhhhhhccCCCEEEEeeccCCccc---cccccCCccEEEEcCCCcchhhhcCCC
Q psy15432 170 TVYNALHAKRKHAEDMPAYFKFLTVMSFYVFVKEKPDAVIMEVGIGGRYD---NTNIIPNTAVVGITSLGYDHTAVLGNT 246 (1255)
Q Consensus 170 ~v~~~l~~~~~~~~~~p~~Fe~Lt~~A~~~F~~~~vD~aVlEvG~GGr~D---~tnii~~P~v~vITnIg~DHld~lG~T 246 (1255)
+++|+ .++++|++|||+|++|++| .+|++ +|+++|||||+.||+|+|| |
T Consensus 143 ----------------~t~~~----------~~~~~d~~VlE~g~~~~~~~~~~~~~~-~p~vaviTNI~~DHld~~g-t 194 (452)
T 1gg4_A 143 ----------------MTLLR----------LTPEYDYAVIELGANHQGEIAWTVSLT-RPEAALVNNLAAAHLEGFG-S 194 (452)
T ss_dssp ----------------HHHTT----------CCTTCSEEEEECCCSSSSHHHHHHHHH-CCSEEEECCCC---------C
T ss_pred ----------------HHHHc----------CCCCCcEEEEEeCCCCcchHHHHhCcc-CCCEEEECCCChHHhhhcC-C
Confidence 11211 2578999999999999998 88876 6999999999999999999 9
Q ss_pred HHHHHHHHHcccC---CCceeeeccCCCchHHHHHHHhhhccCceEEEcCCc---c--------------eeeec--C--
Q psy15432 247 IEEITMQKAGIMK---PNCIAVTSANQRGPCKQILLETSRALNCVLLEAPSI---L--------------NYRWR--G-- 302 (1255)
Q Consensus 247 le~Ia~~KagI~k---~g~~~v~~~~q~~e~~~vl~~~a~~~~~~l~~~~~~---~--------------~~~~~--~-- 302 (1255)
+|+|+++|++||+ ++.++|++. +++.....+ + +.. +++++.++.. . .+.+. +
T Consensus 195 ~e~~~~aK~~i~~~~~~~~~~V~n~-dd~~~~~~~-~-~~~-~~~~~~~g~~~~~~d~~~~~~~~~~~g~~~~~~~~~~~ 270 (452)
T 1gg4_A 195 LAGVAKAKGEIFSGLPENGIAIMNA-DNNDWLNWQ-S-VIG-SRKVWRFSPNAANSDFTATNIHVTSHGTEFTLQTPTGS 270 (452)
T ss_dssp HHHHHHHHHGGGGGCCTTCEEEEET-TBCCHHHHH-H-HHT-TSEEEEECSSCTTCSBEEEEEEECSSSEEEEEEETTEE
T ss_pred HHHHHHHHHHHHhhcccCCEEEEeC-CcHHHHHHH-H-hhc-CCCEEEEeCCCCCCcEEEEEEEEcCCceEEEEEECCCE
Confidence 9999999999997 678888887 666555443 2 222 2333333211 0 11111 1
Q ss_pred cccccCCCchhHHhhHHHHHHHHHHHHHhhccchhhhhHHHHhhhhhccCCCCCCCCCCCCCCccCCCCCCCCccccCCC
Q psy15432 303 QPLDEDWKSTVQSINISLAIQLAYLWMFRMNKSAELKSVIDKFLAEMRVSSPNETPGGQGHLSSCETPGGQGHLSFSETP 382 (1255)
Q Consensus 303 ~~i~l~l~G~~q~~Na~lAia~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (1255)
..+.++++|.||++|+++|++++..+
T Consensus 271 ~~~~l~l~G~hn~~NalaA~a~~~~l------------------------------------------------------ 296 (452)
T 1gg4_A 271 VDVLLPLPGRHNIANALAAAALSMSV------------------------------------------------------ 296 (452)
T ss_dssp EEEEECSSSTHHHHHHHHHHHHHHHT------------------------------------------------------
T ss_pred EEEEeCCCcHHHHHHHHHHHHHHHHc------------------------------------------------------
Confidence 14678999999999999999988764
Q ss_pred CCCCCccccccccCCCCCCCChHHHHHHHhcCC-CCCceEEEEe-cCcEEEEc-cCCCHHHHHHHHHHHHhhhhcccccC
Q psy15432 383 GGQGHLTGNQSSLLMGPHFEIDPKTYRGIKACV-WPGRVQVIRK-NNFKYFLD-GAHTTDSIELCAKWFLRKSEAEASSS 459 (1255)
Q Consensus 383 ~~~~~~~~~~~~l~~~~~~~l~e~i~~gL~~~~-~pGR~e~v~~-~~~~vilD-gAHnp~si~~~l~~l~~~~~~~~~~~ 459 (1255)
|++ ++.|.+||++++ ||||||++.. +++.||+| |||||+|+++++++++... +
T Consensus 297 -----------------gi~-~~~i~~~L~~~~~~~gR~e~~~~~~~~~vidDsyahnp~s~~~~l~~l~~~~--~---- 352 (452)
T 1gg4_A 297 -----------------GAT-LDAIKAGLANLKAVPGRLFPIQLAENQLLLDDSYNANVGSMTAAVQVLAEMP--G---- 352 (452)
T ss_dssp -----------------TCC-HHHHHHHHTTCCCCTTSSEEEEEETTEEEEECCSCCCHHHHHHHHHHHHHSS--S----
T ss_pred -----------------CCC-HHHHHHHHHhCCCCCCCceEEECCCCcEEEEeCCCCCHHHHHHHHHHHHhcc--C----
Confidence 667 899999999997 9999999986 46788999 9999999999999998642 1
Q ss_pred ccCCCCCCCCCccCCCCCccEEEEEecC---CC---CChhhhhHHhhccCCCcEEEEcC
Q psy15432 460 RSVSSCPLDPTQSKSSNVIQRILVFNVT---GE---RDPTKLLSPLLQSNQFEYILVTP 512 (1255)
Q Consensus 460 ~~~~~~~~~~~~~~~~~~~~~ilVfg~~---~d---rD~~~ll~~L~~~~~~d~vi~t~ 512 (1255)
++++|||++ ++ +++..|.+.+ +...+|.+|+|.
T Consensus 353 -------------------~~i~V~G~~~e~g~~~~~~~~~~~~~~-~~~~~d~vi~~g 391 (452)
T 1gg4_A 353 -------------------YRVLVVGDMAELGAESEACHVQVGEAA-KAAGIDRVLSVG 391 (452)
T ss_dssp -------------------EEEEEECCCCCCTTHHHHHHHHHHHHH-HHHTCSEEEEES
T ss_pred -------------------CEEEEECCccccCChhHHHHHHHHHHH-HHcCCCEEEEEC
Confidence 789999997 33 3345566666 333689999986
|
| >2am1_A SP protein, UDP-N-acetylmuramoylalanine-D-glutamyl-lysine-D-A alanine ligase, MURF protein; HET: 1LG; 2.50A {Streptococcus pneumoniae} PDB: 2am2_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-44 Score=428.73 Aligned_cols=335 Identities=14% Similarity=0.120 Sum_probs=244.5
Q ss_pred eccccccccccccCCCceeEeecccccCCcccccccCCCCCCCcHHHHHHHHHhcchhHHHHHhhhcCCCcccccccchH
Q psy15432 10 KELKLNKDAHRKTLPDKTEVHHGGYKHGAVTPHASRSNKEIPQSYVDAIKQLNTLQSNIRTIRESKLRKDPVEMQAVQVD 89 (1255)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~eai~~L~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 89 (1255)
.+++.+..+||++.|+.+||+.+|. .+++.+.. +|++.=-.. . +..++.+ +...+.++
T Consensus 24 ~~i~~i~~Dsr~v~~g~lF~al~G~-~dgh~~~~------------~a~~~Ga~~-----v---v~~~~~~-~~p~i~v~ 81 (454)
T 2am1_A 24 TQLEKAEFDSRLIGTGDLFVPLKGA-RDGHDFIE------------TAFENGAAV-----T---LSEKEVS-NHPYILVD 81 (454)
T ss_dssp CBCCCEESCGGGCCTTCEECCCBSS-SBGGGGHH------------HHHHHTCSE-----E---EESSCCC-SSCEEECS
T ss_pred ceeeeEEEeCCCCCCCCEEEEccCC-cchHHHHH------------HHHHCCCEE-----E---EECCCCC-CCCEEEEC
Confidence 4688899999999999999999998 76666532 333210000 0 0001100 01125688
Q ss_pred HHHHHHHHhcCCccCCCCccEEEEcCCCChhHHHHHHHHHHHHCCCCeEEEcCCcccccceeEEeCCeecChhhhhhHHH
Q psy15432 90 QVVQYLGHLNITLDDIKKLNVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTKYFW 169 (1255)
Q Consensus 90 ~~~~~L~~Lg~~~~~~~~l~vIhVtGTnGKgST~a~l~sIL~~~G~k~Gl~tSPhL~~~rERI~InG~~is~~~ft~~~~ 169 (1255)
+++++|+.|+.++++.+++++||||||||||||++|+++||+++|+ .++||| +++++|. .|
T Consensus 82 ~~~~al~~la~~~~~~~~~~vI~VTGTnGKTTT~~~l~~iL~~~g~---~~~s~g--~~n~~ig---~p----------- 142 (454)
T 2am1_A 82 DVLTAFQSLASYYLEKTTVDVFAVTGSNGKTTTKDMLAHLLSTRYK---TYKTQG--NYNNEIG---LP----------- 142 (454)
T ss_dssp CHHHHHHHHHHHHHHHHCCEEEEEECCCSSSCHHHHHHHHHTTTSC---EEECCT--TCCSTTH---HH-----------
T ss_pred CHHHHHHHHHHHHhhCCCCCEEEEeCCCCcHHHHHHHHHHHHhcCC---EeecCC--ccCcccc---hH-----------
Confidence 9999999999998765688999999999999999999999999995 478898 5666551 11
Q ss_pred HHHHHHHhhhhccCCcchHHHHHHHHhhhhhhccCCCEEEEeeccCCccc---cccccCCccEEEEcCCCcchhhhcCCC
Q psy15432 170 TVYNALHAKRKHAEDMPAYFKFLTVMSFYVFVKEKPDAVIMEVGIGGRYD---NTNIIPNTAVVGITSLGYDHTAVLGNT 246 (1255)
Q Consensus 170 ~v~~~l~~~~~~~~~~p~~Fe~Lt~~A~~~F~~~~vD~aVlEvG~GGr~D---~tnii~~P~v~vITnIg~DHld~lG~T 246 (1255)
+++|+ .++++|++|||+|++|++| .+|++ +|+++|||||+.||+|+|| |
T Consensus 143 ----------------~t~~~----------~~~~~d~~VlE~g~~~~~~~~~~~~~~-~p~vaviTNi~~DHld~~g-t 194 (454)
T 2am1_A 143 ----------------YTVLH----------MPEGTEKLVLEMGQDHLGDIHLLSELA-RPKTAIVTLVGEAHLAFFK-D 194 (454)
T ss_dssp ----------------HHHHT----------CCTTCCEEEEECCCSSTTHHHHHHHHH-CCSEEEECCCCCSSCTTCC-C
T ss_pred ----------------HHHhc----------CCCCCcEEEEEcCCCCcchHHHHhCcc-CCCEEEEcCCchHhhhhcC-C
Confidence 12222 2578999999999999998 88876 6999999999999999999 9
Q ss_pred HHHHHHHHHcccC---CCceeeeccCCCchHHHHHHHhhhccCceEEEcCCc--c------------eeeecC--ccccc
Q psy15432 247 IEEITMQKAGIMK---PNCIAVTSANQRGPCKQILLETSRALNCVLLEAPSI--L------------NYRWRG--QPLDE 307 (1255)
Q Consensus 247 le~Ia~~KagI~k---~g~~~v~~~~q~~e~~~vl~~~a~~~~~~l~~~~~~--~------------~~~~~~--~~i~l 307 (1255)
+|+|+++|++||+ ++.++|++. ++ ... +.+.. +++++.++.. . .+.+.. ..+.+
T Consensus 195 ~e~~a~aK~~i~~~~~~~~~~V~n~-dd--~~~---~~~~~-~~~~~~~g~~~~~d~~~i~~~~~~~~~~~~~~~~~~~l 267 (454)
T 2am1_A 195 RSEIAKGKMQIADGMASGSLLLAPA-DP--IVE---DYLPI-DKKVVRFGQGAELEITDLVERKDSLTFKANFLEQALDL 267 (454)
T ss_dssp HHHHHHHHGGGGTTCCTTCEEEEES-CG--GGG---GGCCS-SSEEEEESTTSSBCEEEEEECSSCEEEEETTCSSEEEE
T ss_pred HHHHHHHHHHHHhhcccCCEEEEEc-HH--HHH---HHHhc-CCcEEEEeCCCCCceeeeEEeCCceEEEEEecCcEEEe
Confidence 9999999999998 677888876 43 332 22222 3344433310 0 122211 14678
Q ss_pred CCCchhHHhhHHHHHHHHHHHHHhhccchhhhhHHHHhhhhhccCCCCCCCCCCCCCCccCCCCCCCCccccCCCCCCCC
Q psy15432 308 DWKSTVQSINISLAIQLAYLWMFRMNKSAELKSVIDKFLAEMRVSSPNETPGGQGHLSSCETPGGQGHLSFSETPGGQGH 387 (1255)
Q Consensus 308 ~l~G~~q~~Na~lAia~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (1255)
+++|.||++|+++|++++..+
T Consensus 268 ~l~G~hn~~NalaA~a~~~~l----------------------------------------------------------- 288 (454)
T 2am1_A 268 PVTGKYNATNAMIASYVALQE----------------------------------------------------------- 288 (454)
T ss_dssp SSCCHHHHHHHHHHHHHHHHT-----------------------------------------------------------
T ss_pred cCCCHHHHHHHHHHHHHHHHc-----------------------------------------------------------
Confidence 999999999999999988764
Q ss_pred ccccccccCCCCCCCChHHHHHHHhcCC-CCCceEEEEec-CcEEEEc-cCCCHHHHHHHHHHHHhhhhcccccCccCCC
Q psy15432 388 LTGNQSSLLMGPHFEIDPKTYRGIKACV-WPGRVQVIRKN-NFKYFLD-GAHTTDSIELCAKWFLRKSEAEASSSRSVSS 464 (1255)
Q Consensus 388 ~~~~~~~l~~~~~~~l~e~i~~gL~~~~-~pGR~e~v~~~-~~~vilD-gAHnp~si~~~l~~l~~~~~~~~~~~~~~~~ 464 (1255)
|++ +++|.+||++++ ||||||++... +..||.| |||||+|+++++++++.....
T Consensus 289 ------------gi~-~~~i~~~L~~~~~~~gR~e~~~~~~~~~iiDDsyahnp~s~~~~l~~l~~~~~~---------- 345 (454)
T 2am1_A 289 ------------GVS-EEQIRLAFQHLELTRNRTEWKKAANGADILSDVYNANPTAMKLILETFSAIPAN---------- 345 (454)
T ss_dssp ------------TCC-HHHHHHHGGGCCCCCCCSCEECCTTTCEEEEECSCCSHHHHHHHHHHHTTSCCC----------
T ss_pred ------------CCC-HHHHHHHHHhCCCccCCeeEEECCCCeEEEEeCCCCCHHHHHHHHHHHHhcccc----------
Confidence 667 899999999999 99999999863 5665656 999999999999999754210
Q ss_pred CCCCCCccCCCCCccEEEEEecC---CCC---ChhhhhHHhhccCCCcEEEEcCCC
Q psy15432 465 CPLDPTQSKSSNVIQRILVFNVT---GER---DPTKLLSPLLQSNQFEYILVTPNI 514 (1255)
Q Consensus 465 ~~~~~~~~~~~~~~~~ilVfg~~---~dr---D~~~ll~~L~~~~~~d~vi~t~~~ 514 (1255)
.++++++|||++ +++ +++.|++.+ +...+|.+|+|.++
T Consensus 346 -----------~~~~~i~V~G~~~e~G~~~~~~~~~~~~~~-~~~~~d~vi~~g~~ 389 (454)
T 2am1_A 346 -----------EGGKKIAVLADMKELGDQSVQLHNQMILSL-SPDVLDIVIFYGED 389 (454)
T ss_dssp -----------SSCEEEEEEECCCCCCTTHHHHHHHGGGGC-CTTTCSEEEEEEST
T ss_pred -----------cCCCEEEEECCchhcCcHHHHHHHHHHHHH-HhcCCCEEEEECcC
Confidence 002789999987 333 344555555 33358999998643
|
| >1p3d_A UDP-N-acetylmuramate--alanine ligase; alpha/beta protein; HET: UMA ANP; 1.70A {Haemophilus influenzae} SCOP: c.5.1.1 c.59.1.1 c.72.2.1 PDB: 1gqq_A* 1p31_A* 1gqy_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-39 Score=390.48 Aligned_cols=318 Identities=15% Similarity=0.117 Sum_probs=232.9
Q ss_pred ccEEEEcCCCChhHHHHHHHHHHHHCCCCeEEEcCCcccccceeEEeCCeecChhhhhhHHHHHHHHHHhhhhccCCcch
Q psy15432 108 LNVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTKYFWTVYNALHAKRKHAEDMPA 187 (1255)
Q Consensus 108 l~vIhVtGTnGKgST~a~l~sIL~~~G~k~Gl~tSPhL~~~rERI~InG~~is~~~ft~~~~~v~~~l~~~~~~~~~~p~ 187 (1255)
.++|||||||||||||+|+++||+++|++ || +.++|...+....+
T Consensus 118 ~~vI~VTGTnGKTTTt~ml~~iL~~~G~~------p~-------~~igg~~~~~~~~~---------------------- 162 (475)
T 1p3d_A 118 RHGIAVAGTHGKTTTTAMISMIYTQAKLD------PT-------FVNGGLVKSAGKNA---------------------- 162 (475)
T ss_dssp SEEEEEESSSCHHHHHHHHHHHHHHTTCC------CE-------EEEEEEETTTTEEE----------------------
T ss_pred CCEEEEECCCCHHHHHHHHHHHHHhCCCC------CE-------EEECCccccccccc----------------------
Confidence 48999999999999999999999999996 44 35566555422110
Q ss_pred HHHHHHHHhhhhhhccCCCEEEEeeccCCccccccccCCccEEEEcCCCcchhhhcCCCHHHHHHHHHccc---CCCcee
Q psy15432 188 YFKFLTVMSFYVFVKEKPDAVIMEVGIGGRYDNTNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIM---KPNCIA 264 (1255)
Q Consensus 188 ~Fe~Lt~~A~~~F~~~~vD~aVlEvG~GGr~D~tnii~~P~v~vITnIg~DHld~lG~Tle~Ia~~KagI~---k~g~~~ 264 (1255)
...++|++|+|+| ++|+++...+|+++|||||+.||+|+||+|+|+|+++|+.|+ +++.++
T Consensus 163 -------------~~~~~d~~VlE~~---~~~~~~~~~~p~vaviTNI~~DHld~~G~t~e~ia~aK~~i~~~~~~~~~~ 226 (475)
T 1p3d_A 163 -------------HLGASRYLIAEAD---ESDASFLHLQPMVSVVTNMEPDHMDTYEGDFEKMKATYVKFLHNLPFYGLA 226 (475)
T ss_dssp -------------ECCSSSEEEEECC---CTTSGGGGCCCSEEEECCCCCCSGGGGTTCHHHHHHHHHHHHTTSCTTCEE
T ss_pred -------------ccCCCCEEEEEec---CCcCccccccCCEEEEcCCChhhhhhhcCCHHHHHHHHHHHHhhCCCCCEE
Confidence 1247899999996 677888877899999999999999999779999999998876 567788
Q ss_pred eeccCCCchHHHHHHHhhhccCceEEEcCCc--------------ceeeec--C---cccccCCCchhHHhhHHHHHHHH
Q psy15432 265 VTSANQRGPCKQILLETSRALNCVLLEAPSI--------------LNYRWR--G---QPLDEDWKSTVQSINISLAIQLA 325 (1255)
Q Consensus 265 v~~~~q~~e~~~vl~~~a~~~~~~l~~~~~~--------------~~~~~~--~---~~i~l~l~G~~q~~Na~lAia~a 325 (1255)
|++. +++.+..++.+... ....|..... ..|.+. + ..+.++++|.||++|+++|++++
T Consensus 227 V~n~-dd~~~~~~~~~~~~--~~~~~g~~~~~d~~~~~~~~~~~~~~f~~~~~~~~~~~~~l~l~G~hn~~NalaAia~~ 303 (475)
T 1p3d_A 227 VMCA-DDPVLMELVPKVGR--QVITYGFSEQADYRIEDYEQTGFQGHYTVICPNNERINVLLNVPGKHNALNATAALAVA 303 (475)
T ss_dssp EEET-TCHHHHHHHHHHCS--EEEEEESSTTCSEEEEEEEEETTEEEEEEECTTCCEEEEEESSCSHHHHHHHHHHHHHH
T ss_pred EEEC-CCHHHHHHHHhcCC--CEEEEecCCCCcEEEEEEEEcCCceEEEEEECCCeEEEEEEcCccHHHHHHHHHHHHHH
Confidence 8887 66666555544211 1112221110 012211 1 14678999999999999999988
Q ss_pred HHHHHhhccchhhhhHHHHhhhhhccCCCCCCCCCCCCCCccCCCCCCCCccccCCCCCCCCccccccccCCCCCCCChH
Q psy15432 326 YLWMFRMNKSAELKSVIDKFLAEMRVSSPNETPGGQGHLSSCETPGGQGHLSFSETPGGQGHLTGNQSSLLMGPHFEIDP 405 (1255)
Q Consensus 326 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~e 405 (1255)
..+ +++ ++
T Consensus 304 ~~l-----------------------------------------------------------------------gi~-~~ 311 (475)
T 1p3d_A 304 KEE-----------------------------------------------------------------------GIA-NE 311 (475)
T ss_dssp HHT-----------------------------------------------------------------------TCC-HH
T ss_pred HHc-----------------------------------------------------------------------CCC-HH
Confidence 764 667 89
Q ss_pred HHHHHHhcCC-CCCceEEEEe-----cCcEEEEccCCCHHHHHHHHHHHHhhhhcccccCccCCCCCCCCCccCCCCCcc
Q psy15432 406 KTYRGIKACV-WPGRVQVIRK-----NNFKYFLDGAHTTDSIELCAKWFLRKSEAEASSSRSVSSCPLDPTQSKSSNVIQ 479 (1255)
Q Consensus 406 ~i~~gL~~~~-~pGR~e~v~~-----~~~~vilDgAHnp~si~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (1255)
.|++||++|+ ||||||++.. +++.||+||||||+++++++++++..... ++
T Consensus 312 ~i~~~L~~f~~~~gR~e~v~~~~~~~~~~~vi~DyaHnp~~~~a~l~al~~~~~~-----------------------~~ 368 (475)
T 1p3d_A 312 AILEALADFQGAGRRFDQLGEFIRPNGKVRLVDDYGHHPTEVGVTIKAAREGWGD-----------------------KR 368 (475)
T ss_dssp HHHHHHHTCCCBTTSSEEEEEEEETTEEEEEEEECCCSHHHHHHHHHHHHHHHCS-----------------------SC
T ss_pred HHHHHHHhCCCCCCCCEEEecccccCCCcEEEEeCCCCHHHHHHHHHHHHhhcCC-----------------------Ce
Confidence 9999999999 9999999976 26789999999999999999999875422 27
Q ss_pred EEEEEecCC-CC--C-hhhhhHHhhccCCCcEEEEcCCCCCCCCCCCCcCCCCcccccccccccccCCCCCCCCCCCCCC
Q psy15432 480 RILVFNVTG-ER--D-PTKLLSPLLQSNQFEYILVTPNILTNESSPDTQYGGNRTIDRFGVKLDSRTAAPNGGHEPGRPN 555 (1255)
Q Consensus 480 ~ilVfg~~~-dr--D-~~~ll~~L~~~~~~d~vi~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 555 (1255)
+++|||+.+ +| + ...|.+.+ . .+|.+|+|++++++|.|. .+.
T Consensus 369 i~~v~g~~~~~r~~~~~~~~~~~~--~-~~d~vi~t~~~~~~e~~~---~g~---------------------------- 414 (475)
T 1p3d_A 369 IVMIFQPHRYSRTRDLFDDFVQVL--S-QVDALIMLDVYAAGEAPI---VGA---------------------------- 414 (475)
T ss_dssp EEEEECCBCHHHHHHTHHHHHHHH--T-TSSEEEEECCBCTTCCCC---TTC----------------------------
T ss_pred EEEEECCCCCccHHHHHHHHHHHH--H-hCCEEEEcCCcCCCCCCC---CCC----------------------------
Confidence 899999743 33 3 34555555 2 589999999988887641 000
Q ss_pred CCCCCCCcccCCCCCcccCCCCCCCcccccccccccchhhHHHHHHhhccCCCcEEEcCCHHHHHHHHhccCCCCCceEE
Q psy15432 556 VGQGGGGFQSRSGDNSIRSNANPLSSVDCHNVNDQSNSFHKIATVASALSQRSKVVEFSSVLDTYNFKYGLDPSKEYHIL 635 (1255)
Q Consensus 556 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~si~~ai~~~~~~~~~~~~~vl 635 (1255)
..+.|++.+..... ..+..++|+++|++.+.... .+++.||
T Consensus 415 -------------------------------------~~~~l~~~~~~~~~-~~~~~~~~~~~ai~~a~~~a-~~gd~VL 455 (475)
T 1p3d_A 415 -------------------------------------DSKSLCRSIRNLGK-VDPILVSDTSQLGDVLDQII-QDGDLIL 455 (475)
T ss_dssp -------------------------------------SHHHHHHHHHHHTS-CCCEEESCGGGHHHHHHHHC-CTTCEEE
T ss_pred -------------------------------------CHHHHHHHHHhhCC-CceEEECCHHHHHHHHHHhC-CCCCEEE
Confidence 00223333332211 13567899999999999876 4677899
Q ss_pred Ee--cccccccccc
Q psy15432 636 VT--GSLHLVGAFL 647 (1255)
Q Consensus 636 vt--GSlhLVGgvL 647 (1255)
|+ ||+|+++..|
T Consensus 456 v~G~Gs~~~v~~~l 469 (475)
T 1p3d_A 456 AQGAGSVSKISRGL 469 (475)
T ss_dssp EECSSTHHHHHHHH
T ss_pred EECCCCHHHHHHHH
Confidence 99 9999998765
|
| >2f00_A UDP-N-acetylmuramate--L-alanine ligase; amide bond ligase, ATPase, bacterial cell WALL; 2.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-39 Score=388.33 Aligned_cols=259 Identities=15% Similarity=0.129 Sum_probs=197.6
Q ss_pred ccEEEEcCCCChhHHHHHHHHHHHHCCCCeEEEcCCcccccceeEEeCCeecChhhhhhHHHHHHHHHHhhhhccCCcch
Q psy15432 108 LNVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTKYFWTVYNALHAKRKHAEDMPA 187 (1255)
Q Consensus 108 l~vIhVtGTnGKgST~a~l~sIL~~~G~k~Gl~tSPhL~~~rERI~InG~~is~~~ft~~~~~v~~~l~~~~~~~~~~p~ 187 (1255)
.++|||||||||||||+|+++||+++|++ || +.++|...+.....
T Consensus 119 ~~vI~VTGTnGKTTTt~ml~~iL~~~G~~------p~-------~~igg~~~~~~~~~---------------------- 163 (491)
T 2f00_A 119 RHGIAIAGTHGKTTTTAMVSSIYAEAGLD------PT-------FVNGGLVKAAGVHA---------------------- 163 (491)
T ss_dssp SEEEEEESSSCHHHHHHHHHHHHHHTTCC------CE-------EEEEEEETTTTEEE----------------------
T ss_pred CCEEEEECCCCHHHHHHHHHHHHHhCCCC------CE-------EEECCeeccccccc----------------------
Confidence 48999999999999999999999999986 44 34556655422100
Q ss_pred HHHHHHHHhhhhhhccCCCEEEEeeccCCccccccccCCccEEEEcCCCcchhhhcCCCHHHHHHHHHccc---CCCcee
Q psy15432 188 YFKFLTVMSFYVFVKEKPDAVIMEVGIGGRYDNTNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIM---KPNCIA 264 (1255)
Q Consensus 188 ~Fe~Lt~~A~~~F~~~~vD~aVlEvG~GGr~D~tnii~~P~v~vITnIg~DHld~lG~Tle~Ia~~KagI~---k~g~~~ 264 (1255)
...++|++|+|+| ++|+++.+.+|+++|||||+.||+|+||+|+|+|+++|+.|+ +++.++
T Consensus 164 -------------~~~~~d~~VlE~~---~~~~~~~~~~p~vaviTNI~~DHld~~G~t~e~ia~aK~~i~~~~~~~~~~ 227 (491)
T 2f00_A 164 -------------RLGHGRYLIAEAD---ESDASFLHLQPMVAIVTNIEADHMDTYQGDFENLKQTFINFLHNLPFYGRA 227 (491)
T ss_dssp -------------ECCSSSEEEEECC---CTTSGGGGCCCSEEEECCCCSCSGGGTTTCHHHHHHHHHHHHTTSCTTCEE
T ss_pred -------------cCCCCCEEEEEeC---CCccchhcCCCCEEEEcCCChhhhhhhcCCHHHHHHHHHHHHHhCCCCCEE
Confidence 1247899999996 678888877899999999999999999779999999998877 567788
Q ss_pred eeccCCCchHHHHHHHhhhccCceEEEcC--Ccc--------------eeeec--C---cccccCCCchhHHhhHHHHHH
Q psy15432 265 VTSANQRGPCKQILLETSRALNCVLLEAP--SIL--------------NYRWR--G---QPLDEDWKSTVQSINISLAIQ 323 (1255)
Q Consensus 265 v~~~~q~~e~~~vl~~~a~~~~~~l~~~~--~~~--------------~~~~~--~---~~i~l~l~G~~q~~Na~lAia 323 (1255)
|++. +++.+..++.+. +++++.++ ... .+.+. + ..+.++++|.||++|+++|++
T Consensus 228 V~n~-dd~~~~~~~~~~----~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~hn~~NalaAia 302 (491)
T 2f00_A 228 VMCV-DDPVIRELLPRV----GRQTTTYGFSEDADVRVEDYQQIGPQGHFTLLRQDKEPMRVTLNAPGRHNALNAAAAVA 302 (491)
T ss_dssp EEET-TSHHHHHHGGGC----CSEEEEEESSTTCSEEEEEEEEETTEEEEEEECTTSCCEEEEESSCSHHHHHHHHHHHH
T ss_pred EEEC-CCHHHHHHHHhc----CCcEEEEeCCCCCCEEEEEEEEcCCceEEEEEECCceEEEEEEccchHHHHHHHHHHHH
Confidence 8887 665554443321 22332221 110 12221 1 146789999999999999999
Q ss_pred HHHHHHHhhccchhhhhHHHHhhhhhccCCCCCCCCCCCCCCccCCCCCCCCccccCCCCCCCCccccccccCCCCCCCC
Q psy15432 324 LAYLWMFRMNKSAELKSVIDKFLAEMRVSSPNETPGGQGHLSSCETPGGQGHLSFSETPGGQGHLTGNQSSLLMGPHFEI 403 (1255)
Q Consensus 324 ~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l 403 (1255)
++..+ +++
T Consensus 303 ~a~~l-----------------------------------------------------------------------gi~- 310 (491)
T 2f00_A 303 VATEE-----------------------------------------------------------------------GID- 310 (491)
T ss_dssp HHHHH-----------------------------------------------------------------------TCC-
T ss_pred HHHHc-----------------------------------------------------------------------CCC-
Confidence 98776 567
Q ss_pred hHHHHHHHhcCC-CCCceEEEEe---------cC-cEEEEccCCCHHHHHHHHHHHHhhhhcccccCccCCCCCCCCCcc
Q psy15432 404 DPKTYRGIKACV-WPGRVQVIRK---------NN-FKYFLDGAHTTDSIELCAKWFLRKSEAEASSSRSVSSCPLDPTQS 472 (1255)
Q Consensus 404 ~e~i~~gL~~~~-~pGR~e~v~~---------~~-~~vilDgAHnp~si~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~ 472 (1255)
++.|++||++|+ ||||||++.. ++ +.||+||||||+++++++++++.....
T Consensus 311 ~~~i~~~L~~f~~~~gR~e~v~~~~~~~~~~~~g~~~vi~DyaHnp~~~~a~l~al~~~~~~------------------ 372 (491)
T 2f00_A 311 DEAILRALESFQGTGRRFDFLGEFPLEPVNGKSGTAMLVDDYGHHPTEVDATIKAARAGWPD------------------ 372 (491)
T ss_dssp HHHHHHHHHTCCCBTTSSEEEEEEESSSSSSCSSEEEEEEECCCSHHHHHHHHHHHHTTCCS------------------
T ss_pred HHHHHHHHHhCCCCCCCCEEEccccccccccCCCcEEEEEeCCCCHHHHHHHHHHHHhhcCC------------------
Confidence 899999999999 9999999986 26 899999999999999999999864321
Q ss_pred CCCCCccEEEEEecC---CCCC-hhhhhHHhhccCCCcEEEEcCCCCCCCCC
Q psy15432 473 KSSNVIQRILVFNVT---GERD-PTKLLSPLLQSNQFEYILVTPNILTNESS 520 (1255)
Q Consensus 473 ~~~~~~~~ilVfg~~---~drD-~~~ll~~L~~~~~~d~vi~t~~~~~~~~~ 520 (1255)
+++++|||+. .+|+ ...|.+.+ . .+|.+|+|++++++|.|
T Consensus 373 -----~~i~~v~g~~~~~r~k~~~~~~~~~~--~-~~d~vilt~~~~~~e~~ 416 (491)
T 2f00_A 373 -----KNLVMLFQPHRFTRTRDLYDDFANVL--T-QVDTLLMLEVYPAGEAP 416 (491)
T ss_dssp -----SEEEEEECCBCHHHHTTTHHHHHHHH--T-TSSEEEECCCBCSSSCC
T ss_pred -----CeEEEEECCCCCcchHHHHHHHHHHH--H-hCCEEEEcCCcCCCCCC
Confidence 2789999963 3445 35666655 2 58999999988888764
|
| >1j6u_A UDP-N-acetylmuramate-alanine ligase MURC; structural genomics, TM0231, JCSG, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: c.5.1.1 c.59.1.1 c.72.2.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-38 Score=377.75 Aligned_cols=260 Identities=16% Similarity=0.093 Sum_probs=188.9
Q ss_pred ccEEEEcCCCChhHHHHHHHHHHHHCCCCeEEEcCCcccccc-eeEEeCCeecChhhhhhHHHHHHHHHHhhhhccCCcc
Q psy15432 108 LNVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVR-ERIKLNGEPISYDKFTKYFWTVYNALHAKRKHAEDMP 186 (1255)
Q Consensus 108 l~vIhVtGTnGKgST~a~l~sIL~~~G~k~Gl~tSPhL~~~r-ERI~InG~~is~~~ft~~~~~v~~~l~~~~~~~~~~p 186 (1255)
+++|||||||||||||+|+++||+++|+++|+|++|++.+++ ++++++
T Consensus 114 ~~vI~VTGTnGKTTTt~ml~~iL~~~G~~~~~~~~g~~~~~g~~~~~~~------------------------------- 162 (469)
T 1j6u_A 114 KEEFAVTGTDGKTTTTAMVAHVLKHLRKSPTVFLGGIMDSLEHGNYEKG------------------------------- 162 (469)
T ss_dssp CCEEEEECSSSHHHHHHHHHHHHHHTTCCCEEECSSCCTTSTTSSEECC-------------------------------
T ss_pred CCEEEEECCCCHHHHHHHHHHHHHHcCCCceEEECCeecccCccccccC-------------------------------
Confidence 589999999999999999999999999999999999998887 777632
Q ss_pred hHHHHHHHHhhhhhhccCCCEEEEeeccCCccccccccCCccEEEEcCCCcchhhhcCCCHHHHHHHHHcccCCCceeee
Q psy15432 187 AYFKFLTVMSFYVFVKEKPDAVIMEVGIGGRYDNTNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIMKPNCIAVT 266 (1255)
Q Consensus 187 ~~Fe~Lt~~A~~~F~~~~vD~aVlEvG~GGr~D~tnii~~P~v~vITnIg~DHld~lG~Tle~Ia~~KagI~k~g~~~v~ 266 (1255)
+.| +|+|+|+. |.++...+|+++|||||+.||+|+||+|+|+|+++|..++.....+|+
T Consensus 163 -----------------~~~-~V~E~~~~---~~~~~~~~p~vaviTNI~~DHld~~g~t~e~ia~ak~~~~~~~~~~V~ 221 (469)
T 1j6u_A 163 -----------------NGP-VVYELDES---EEFFSEFSPNYLIITNARGDHLENYGNSLTRYRSAFEKISRNTDLVVT 221 (469)
T ss_dssp -----------------SSC-EEEEECTT---SGGGGGCCCSEEEECCCCCCCGGGGTTCHHHHHHHHHHHHHTCSEEEE
T ss_pred -----------------CCC-EEEECCCc---cCccccccCCEEEEcCCCcchhhhhcCHHHHHHHHHHHHHhhCCEEEE
Confidence 135 89999875 667766689999999999999999997799999999988764335666
Q ss_pred ccCCCchHHHHHHHhhhccC---ceEEE----cCCc-ceeee--cC---cccccCCCchhHHhhHHHHHHHHHHHHHhhc
Q psy15432 267 SANQRGPCKQILLETSRALN---CVLLE----APSI-LNYRW--RG---QPLDEDWKSTVQSINISLAIQLAYLWMFRMN 333 (1255)
Q Consensus 267 ~~~q~~e~~~vl~~~a~~~~---~~l~~----~~~~-~~~~~--~~---~~i~l~l~G~~q~~Na~lAia~a~~~l~~~~ 333 (1255)
+. +++.+.++ .....+ ..+.. .... ..|.+ .+ ..+.++++|.||++|+++|++++..+
T Consensus 222 n~-dd~~~~~~---~~~~~g~~~~d~~~~~~~~~~~~~~f~~~~~~~~~~~~~l~l~G~hn~~NalaAia~a~~l----- 292 (469)
T 1j6u_A 222 FA-EDELTSHL---GDVTFGVKKGTYTLEMRSASRAEQKAMVEKNGKRYLELKLKVPGFHNVLNALAVIALFDSL----- 292 (469)
T ss_dssp ET-TCTTTGGG---CSEEECSSSSSEEEEEEEECSSCEEEEEEETTEEEEEEEESSCSHHHHHHHHHHHHHHHHT-----
T ss_pred EC-CChhhccc---eEEEEECCCceEEEEEEECCCCCEEEEEEECCeEEEEEEecCcCHHHHHHHHHHHHHHHHc-----
Confidence 65 55544321 000000 01110 0000 11211 11 14678999999999999999988764
Q ss_pred cchhhhhHHHHhhhhhccCCCCCCCCCCCCCCccCCCCCCCCccccCCCCCCCCccccccccCCCCCCCChHHHHHHHhc
Q psy15432 334 KSAELKSVIDKFLAEMRVSSPNETPGGQGHLSSCETPGGQGHLSFSETPGGQGHLTGNQSSLLMGPHFEIDPKTYRGIKA 413 (1255)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~e~i~~gL~~ 413 (1255)
+++ ++.|++||++
T Consensus 293 ------------------------------------------------------------------gi~-~~~i~~~L~~ 305 (469)
T 1j6u_A 293 ------------------------------------------------------------------GYD-LAPVLEALEE 305 (469)
T ss_dssp ------------------------------------------------------------------TCC-HHHHHHHHHH
T ss_pred ------------------------------------------------------------------CCC-HHHHHHHHHh
Confidence 567 8999999999
Q ss_pred CC-CCCceEEE--E-ecCcEEEEccCCCHHHHHHHHHHHHhhhhcccccCccCCCCCCCCCccCCCCCccEEEEEec---
Q psy15432 414 CV-WPGRVQVI--R-KNNFKYFLDGAHTTDSIELCAKWFLRKSEAEASSSRSVSSCPLDPTQSKSSNVIQRILVFNV--- 486 (1255)
Q Consensus 414 ~~-~pGR~e~v--~-~~~~~vilDgAHnp~si~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilVfg~--- 486 (1255)
|+ ||||||++ . .+++.||+||||||++++++++++++.... +++++|||+
T Consensus 306 f~g~~gR~e~v~~~~~~g~~vi~D~aHnp~~~~a~l~al~~~~~~-----------------------~~i~~I~g~g~~ 362 (469)
T 1j6u_A 306 FRGVHRRFSIAFHDPETNIYVIDDYAHTPDEIRNLLQTAKEVFEN-----------------------EKIVVIFQPHRY 362 (469)
T ss_dssp CCCCTTSSEEEEEETTTTEEEEEECCCSHHHHHHHHHHHHHHCSS-----------------------SEEEEEECCBC-
T ss_pred CCCCCCCcEEEcccccCCcEEEEeCCCCHHHHHHHHHHHHHhcCC-----------------------CcEEEEEcCCCC
Confidence 99 99999999 4 357899999999999999999999853321 278999984
Q ss_pred CCCCChhhhhHHhhccCCCcEEEEcCCCCCCCCC
Q psy15432 487 TGERDPTKLLSPLLQSNQFEYILVTPNILTNESS 520 (1255)
Q Consensus 487 ~~drD~~~ll~~L~~~~~~d~vi~t~~~~~~~~~ 520 (1255)
.+++|....+..++ ..+|.+|+|++++++|.|
T Consensus 363 ~r~~~~~~~l~~~~--~~~d~vil~~~~~~~e~p 394 (469)
T 1j6u_A 363 SRLEREDGNFAKAL--QLADEVVVTEVYDAFEEK 394 (469)
T ss_dssp -------CHHHHHH--TTSSEEEECCCBC-----
T ss_pred CccHHHHHHHHHHH--hcCCEEEEcccCCCCCCc
Confidence 34455344444441 358999999888877664
|
| >2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-38 Score=375.18 Aligned_cols=246 Identities=14% Similarity=0.151 Sum_probs=192.5
Q ss_pred ccEEEEcCCCChhHHHHHHHHHHHHCCCCeEEEcCCcccccceeEEeCCeecChhhhhhHHHHHHHHHHhhhhccCCcch
Q psy15432 108 LNVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTKYFWTVYNALHAKRKHAEDMPA 187 (1255)
Q Consensus 108 l~vIhVtGTnGKgST~a~l~sIL~~~G~k~Gl~tSPhL~~~rERI~InG~~is~~~ft~~~~~v~~~l~~~~~~~~~~p~ 187 (1255)
.++||||||||||||++|+++||+++|++++++++- |.|+++.
T Consensus 104 ~~vI~VTGTnGKTTT~~ml~~iL~~~g~~~~~~gni------------g~~~~~~------------------------- 146 (439)
T 2x5o_A 104 APIVAITGSNGKSTVTTLVGEMAKAAGVNVGVGGNI------------GLPALML------------------------- 146 (439)
T ss_dssp SCEEEEECSSSHHHHHHHHHHHHHHTTCCEEEEESS------------SBCHHHH-------------------------
T ss_pred CCEEEEECCCCHHHHHHHHHHHHHhcCCCEEEeccc------------CHHHHHH-------------------------
Confidence 589999999999999999999999999999988761 4444310
Q ss_pred HHHHHHHHhhhhhhccCCCEEEEeeccCCccccccccCCccEEEEcCCCcchhhhcCCCHHHHHHHHHcccCCCceeeec
Q psy15432 188 YFKFLTVMSFYVFVKEKPDAVIMEVGIGGRYDNTNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIMKPNCIAVTS 267 (1255)
Q Consensus 188 ~Fe~Lt~~A~~~F~~~~vD~aVlEvG~GGr~D~tnii~~P~v~vITnIg~DHld~lG~Tle~Ia~~KagI~k~g~~~v~~ 267 (1255)
...+.|++|+|+|+ +++|.||.+ +|+++|||||+.||+|+||.|+|+|+++|++||+++.++|++
T Consensus 147 -------------~~~~~d~~VlE~~~-~~l~~~~~~-~p~vaviTNI~~DHld~~G~t~e~i~~~K~~i~~~~~~~V~n 211 (439)
T 2x5o_A 147 -------------LDDECELYVLELSS-FQLETTSSL-QAVAATILNVTEDHMDRYPFGLQQYRAAKLRIYENAKVCVVN 211 (439)
T ss_dssp -------------CCTTCCEEEEECCH-HHHHTCCCC-CCSEEEECCCCSCCGGGCTTHHHHHHHHHHGGGTTCSEEEEE
T ss_pred -------------hCCCCCEEEEECCc-hhhcccccC-CCCEEEEeCCChhhcccccCCHHHHHHHHHHHHcCCCEEEEe
Confidence 12346999999999 789999987 799999999999999999779999999999999999899998
Q ss_pred cCCCchHHHHHHHhhhccCceEEEcCCc----c-------eeee-cCc----ccccCCCchhHHhhHHHHHHHHHHHHHh
Q psy15432 268 ANQRGPCKQILLETSRALNCVLLEAPSI----L-------NYRW-RGQ----PLDEDWKSTVQSINISLAIQLAYLWMFR 331 (1255)
Q Consensus 268 ~~q~~e~~~vl~~~a~~~~~~l~~~~~~----~-------~~~~-~~~----~i~l~l~G~~q~~Na~lAia~a~~~l~~ 331 (1255)
. +++.+..++.. +++++.++.. . .+.+ .+. .+.++++|.||++|+++|++++..+
T Consensus 212 ~-dd~~~~~~~~~-----~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~hn~~NalaA~a~~~~l--- 282 (439)
T 2x5o_A 212 A-DDALTMPIRGA-----DERCVSFGVNMGDYHLNHQQGETWLRVKGEKVLNVKEMKLSGQHNYTNALAALALADAA--- 282 (439)
T ss_dssp T-TCGGGSCSCCC-----SSCCEEECSSSSSEEEEEETTEEEEEETTEEEEEGGGCSCCSHHHHHHHHHHHHHHHHT---
T ss_pred C-CCHHHHHHhhc-----CCcEEEEeCCCcCcCcEEEECCEEEEeCCcEEEeehhcCCCCHHHHHHHHHHHHHHHHc---
Confidence 7 66654433221 1222222110 0 1112 111 2578999999999999999988764
Q ss_pred hccchhhhhHHHHhhhhhccCCCCCCCCCCCCCCccCCCCCCCCccccCCCCCCCCccccccccCCCCCCCChHHHHHHH
Q psy15432 332 MNKSAELKSVIDKFLAEMRVSSPNETPGGQGHLSSCETPGGQGHLSFSETPGGQGHLTGNQSSLLMGPHFEIDPKTYRGI 411 (1255)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~e~i~~gL 411 (1255)
+++ ++.|.+||
T Consensus 283 --------------------------------------------------------------------gi~-~~~i~~~L 293 (439)
T 2x5o_A 283 --------------------------------------------------------------------GLP-RASSLKAL 293 (439)
T ss_dssp --------------------------------------------------------------------TCC-HHHHHHHH
T ss_pred --------------------------------------------------------------------CCC-HHHHHHHH
Confidence 667 99999999
Q ss_pred hcCC-CCCceEEEEe-cCcEEEEc-cCCCHHHHHHHHHHHHhhhhcccccCccCCCCCCCCCccCCCCCccEEEEEecCC
Q psy15432 412 KACV-WPGRVQVIRK-NNFKYFLD-GAHTTDSIELCAKWFLRKSEAEASSSRSVSSCPLDPTQSKSSNVIQRILVFNVTG 488 (1255)
Q Consensus 412 ~~~~-~pGR~e~v~~-~~~~vilD-gAHnp~si~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilVfg~~~ 488 (1255)
++|+ ||||||++.. +++.||+| |||||+|+++++++++. . +++++|||.+
T Consensus 294 ~~f~~~~gR~e~~~~~~~~~vi~Ds~a~np~a~~~al~~l~~---~-----------------------~~~i~v~g~~- 346 (439)
T 2x5o_A 294 TTFTGLPHRFEVVLEHNGVRWINDSKATNVGSTEAALNGLHV---D-----------------------GTLHLLLGGD- 346 (439)
T ss_dssp HHCCCCTTSSEEEEEETTEEEEECTTCCSHHHHHHHHTTCCC---S-----------------------SCEEEEEESB-
T ss_pred HhCCCCCCceEEEEEECCEEEEEeCCCCCHHHHHHHHHhCCc---C-----------------------CCEEEEEcCC-
Confidence 9998 9999999975 56788999 99999999999876632 1 2789999974
Q ss_pred CC--ChhhhhHHhhccCCCcEEEEcC
Q psy15432 489 ER--DPTKLLSPLLQSNQFEYILVTP 512 (1255)
Q Consensus 489 dr--D~~~ll~~L~~~~~~d~vi~t~ 512 (1255)
+| |.+.+++.+ ...+|.+|++.
T Consensus 347 ~k~~~~~~~~~~l--~~~~d~vi~~g 370 (439)
T 2x5o_A 347 GKSADFSPLARYL--NGDNVRLYCFG 370 (439)
T ss_dssp CTTCCCGGGGGGS--CSSSEEEEEES
T ss_pred CCCCCHHHHHHHH--HhhCCEEEEEC
Confidence 56 778888777 34588888874
|
| >2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-38 Score=375.89 Aligned_cols=294 Identities=14% Similarity=0.109 Sum_probs=223.5
Q ss_pred ceEEEecCCCCCccHHHHHHHHHHHCCCCeEEEcCcccccccceeeeCCeecChhhhhhHHHHHHHHHHHHhhcCCCCCc
Q psy15432 720 LNVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTKYFWTVYNALHAKRKHAEDMPA 799 (1255)
Q Consensus 720 l~vIhVTGTnGKgST~aml~sILr~~G~rtGl~tSPhL~~~~ERI~InG~pIs~~~f~~~~~~v~~~l~~~~~~~~~~pt 799 (1255)
.++|||||||||||||+|+++||+++|++++++++. |.|++..
T Consensus 104 ~~vI~VTGTnGKTTT~~ml~~iL~~~g~~~~~~gni------------g~~~~~~------------------------- 146 (439)
T 2x5o_A 104 APIVAITGSNGKSTVTTLVGEMAKAAGVNVGVGGNI------------GLPALML------------------------- 146 (439)
T ss_dssp SCEEEEECSSSHHHHHHHHHHHHHHTTCCEEEEESS------------SBCHHHH-------------------------
T ss_pred CCEEEEECCCCHHHHHHHHHHHHHhcCCCEEEeccc------------CHHHHHH-------------------------
Confidence 589999999999999999999999999999988762 6664321
Q ss_pred HHHHHHHHHHHhhhcCCCCEEEEecccCCccccccccCCCcEEEEcCCCchhhhhcCCCHHHHHHHHhccccCCceEEEc
Q psy15432 800 YFKFLTVMSFYVFVKEKPDAVIMEVGIGGRYDNTNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIMKPNCIAVTS 879 (1255)
Q Consensus 800 ~Fe~lT~mAf~~F~~~~vD~aVlEVG~GGr~D~TNvi~~P~VavITnIg~DHl~~LG~TleeIA~~KagI~K~g~~av~~ 879 (1255)
+..+.|++|+|+|+ +++|.||.+ +|+++|||||+.||+++||+|+|+|+++|++||++++++|++
T Consensus 147 -------------~~~~~d~~VlE~~~-~~l~~~~~~-~p~vaviTNI~~DHld~~G~t~e~i~~~K~~i~~~~~~~V~n 211 (439)
T 2x5o_A 147 -------------LDDECELYVLELSS-FQLETTSSL-QAVAATILNVTEDHMDRYPFGLQQYRAAKLRIYENAKVCVVN 211 (439)
T ss_dssp -------------CCTTCCEEEEECCH-HHHHTCCCC-CCSEEEECCCCSCCGGGCTTHHHHHHHHHHGGGTTCSEEEEE
T ss_pred -------------hCCCCCEEEEECCc-hhhcccccC-CCCEEEEeCCChhhcccccCCHHHHHHHHHHHHcCCCEEEEe
Confidence 12346999999999 779999987 799999999999999999779999999999999999999999
Q ss_pred cCCCChhHHHHHHHhhhcCCeEEEcCCcc-----------ceec-cCC----ccccCCCchhHHHHHHHHHHHHHHHHHh
Q psy15432 880 ANQRGPCKQILLETSRALNCVLLEAPSIL-----------NYRW-RGQ----PLDEDWKSTVQSINISLAIQLAYLWMFR 943 (1255)
Q Consensus 880 ~~qd~~~~~vl~~~A~~~~~~l~~~~~~~-----------~~~~-~~~----~v~l~L~G~hq~~Na~lAiala~~~l~~ 943 (1255)
. +++...+++.. +++++.++... .+.+ .+. .+.++++|.||++|+++|++++..
T Consensus 212 ~-dd~~~~~~~~~-----~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~hn~~NalaA~a~~~~---- 281 (439)
T 2x5o_A 212 A-DDALTMPIRGA-----DERCVSFGVNMGDYHLNHQQGETWLRVKGEKVLNVKEMKLSGQHNYTNALAALALADA---- 281 (439)
T ss_dssp T-TCGGGSCSCCC-----SSCCEEECSSSSSEEEEEETTEEEEEETTEEEEEGGGCSCCSHHHHHHHHHHHHHHHH----
T ss_pred C-CCHHHHHHhhc-----CCcEEEEeCCCcCcCcEEEECCEEEEeCCcEEEeehhcCCCCHHHHHHHHHHHHHHHH----
Confidence 8 55544333221 23444443210 0111 111 257899999999999999998876
Q ss_pred hcchhhhhhHHHHHhhhhhcCCCCCCCCCCCCCCcCCCCCCCCCccccCCCCCCCCcccccccccCCCCCCCC-HHHHHH
Q psy15432 944 MNKSAELKSVIDKFLAEMRVSSPNETPGGQGHLSSCETPGGQGHLSFSETPGGQGHLTGNQSSLLMGPHFEID-PKTYRG 1022 (1255)
Q Consensus 944 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~i~-~~i~~g 1022 (1255)
+|++ +.+.+|
T Consensus 282 ---------------------------------------------------------------------lgi~~~~i~~~ 292 (439)
T 2x5o_A 282 ---------------------------------------------------------------------AGLPRASSLKA 292 (439)
T ss_dssp ---------------------------------------------------------------------TTCCHHHHHHH
T ss_pred ---------------------------------------------------------------------cCCCHHHHHHH
Confidence 4666 679999
Q ss_pred HhcCC-CCCcEEEEee-cCcEEEEE-cCcCHHHHHHHHHHHHhhhccccCCCcccCCCCCcEEEEEecCCCC--Chhhhh
Q psy15432 1023 IKACV-WPGRVQVIRK-NNFKYFLD-GAHTTDSIELCAKWFLRKSEAEANPTQSKSSNVIQRILVFNVTGER--DPTKLL 1097 (1255)
Q Consensus 1023 L~~~~-~pGR~E~v~~-~~~~vilD-gAHNP~S~~a~l~~l~~~~~~~~~~~~~~~~~~~~~vlVfg~~~dr--D~~~ll 1097 (1255)
|++|+ ||||||++.. ++++||+| |||||+|+++++++++. .+++++|||.+ +| |.+.++
T Consensus 293 L~~f~~~~gR~e~~~~~~~~~vi~Ds~a~np~a~~~al~~l~~---------------~~~~i~v~g~~-~k~~~~~~~~ 356 (439)
T 2x5o_A 293 LTTFTGLPHRFEVVLEHNGVRWINDSKATNVGSTEAALNGLHV---------------DGTLHLLLGGD-GKSADFSPLA 356 (439)
T ss_dssp HHHCCCCTTSSEEEEEETTEEEEECTTCCSHHHHHHHHTTCCC---------------SSCEEEEEESB-CTTCCCGGGG
T ss_pred HHhCCCCCCceEEEEEECCEEEEEeCCCCCHHHHHHHHHhCCc---------------CCCEEEEEcCC-CCCCCHHHHH
Confidence 99998 9999999975 46678889 99999999999987642 14689999974 56 778888
Q ss_pred hhhhcCCCCcEEEEcCCCCcccccccCCCCCcccccccccccCCHHHHHHHHHHHcCCCceEEeec-CCCCCCcc
Q psy15432 1098 SPLLQSNQFEYILVTPNILTNEIRWRGQPLDEDWKSTVQSINISLAIQLAYLWMFRMNKSAELKRN-QSSLPMGP 1171 (1255)
Q Consensus 1098 ~~L~~~~~~d~vi~t~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~ 1171 (1255)
+.+ . ..+|.+++++........ . ......+..+.++.++.+.....+.+++|+.+ +.|+.|-+
T Consensus 357 ~~l-~-~~~d~vi~~g~~~~~~~~-~--------~~~~~~~~~~~~~a~~~~~~~~~~gd~vL~~~a~~S~~~~~ 420 (439)
T 2x5o_A 357 RYL-N-GDNVRLYCFGRDGAQLAA-L--------RPEVAEQTETMEQAMRLLAPRVQPGDMVLLSPACASLDQFK 420 (439)
T ss_dssp GGS-C-SSSEEEEEESTTHHHHHT-T--------SGGGEEECSSHHHHHHHHGGGCCTTCEEEECCSSBSTTTSS
T ss_pred HHH-H-hhCCEEEEECCCHHHHHH-H--------hcCCccccCCHHHHHHHHHHhCCCCCEEEEcchhhHhhhhh
Confidence 777 3 458988888754332211 0 01012234688999999988888888888865 57777763
|
| >1p3d_A UDP-N-acetylmuramate--alanine ligase; alpha/beta protein; HET: UMA ANP; 1.70A {Haemophilus influenzae} SCOP: c.5.1.1 c.59.1.1 c.72.2.1 PDB: 1gqq_A* 1p31_A* 1gqy_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.5e-38 Score=375.14 Aligned_cols=304 Identities=14% Similarity=0.079 Sum_probs=221.3
Q ss_pred ceEEEecCCCCCccHHHHHHHHHHHCCCCeEEEcCcccccccceeeeCCeecChhhhhhHHHHHHHHHHHHhhcCCCCCc
Q psy15432 720 LNVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTKYFWTVYNALHAKRKHAEDMPA 799 (1255)
Q Consensus 720 l~vIhVTGTnGKgST~aml~sILr~~G~rtGl~tSPhL~~~~ERI~InG~pIs~~~f~~~~~~v~~~l~~~~~~~~~~pt 799 (1255)
.++|||||||||||||+|+++||+++|++ || +.++|...+.....
T Consensus 118 ~~vI~VTGTnGKTTTt~ml~~iL~~~G~~------p~-------~~igg~~~~~~~~~---------------------- 162 (475)
T 1p3d_A 118 RHGIAVAGTHGKTTTTAMISMIYTQAKLD------PT-------FVNGGLVKSAGKNA---------------------- 162 (475)
T ss_dssp SEEEEEESSSCHHHHHHHHHHHHHHTTCC------CE-------EEEEEEETTTTEEE----------------------
T ss_pred CCEEEEECCCCHHHHHHHHHHHHHhCCCC------CE-------EEECCccccccccc----------------------
Confidence 48999999999999999999999999986 33 24555554322210
Q ss_pred HHHHHHHHHHHhhhcCCCCEEEEecccCCccccccccCCCcEEEEcCCCchhhhhcCCCHHHHHHHHhccc---cCCceE
Q psy15432 800 YFKFLTVMSFYVFVKEKPDAVIMEVGIGGRYDNTNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIM---KPNCIA 876 (1255)
Q Consensus 800 ~Fe~lT~mAf~~F~~~~vD~aVlEVG~GGr~D~TNvi~~P~VavITnIg~DHl~~LG~TleeIA~~KagI~---K~g~~a 876 (1255)
...++|++|+|+| ++|.++...+|+++|||||+.||+++||+|+|+|+++|+.|+ ++++++
T Consensus 163 -------------~~~~~d~~VlE~~---~~~~~~~~~~p~vaviTNI~~DHld~~G~t~e~ia~aK~~i~~~~~~~~~~ 226 (475)
T 1p3d_A 163 -------------HLGASRYLIAEAD---ESDASFLHLQPMVSVVTNMEPDHMDTYEGDFEKMKATYVKFLHNLPFYGLA 226 (475)
T ss_dssp -------------ECCSSSEEEEECC---CTTSGGGGCCCSEEEECCCCCCSGGGGTTCHHHHHHHHHHHHTTSCTTCEE
T ss_pred -------------ccCCCCEEEEEec---CCcCccccccCCEEEEcCCChhhhhhhcCCHHHHHHHHHHHHhhCCCCCEE
Confidence 1247899999996 677888877899999999999999999779999999998876 577889
Q ss_pred EEccCCCChhHHHHHHHhhhcCCeEEEcCCc----------------cceec--cC---CccccCCCchhHHHHHHHHHH
Q psy15432 877 VTSANQRGPCKQILLETSRALNCVLLEAPSI----------------LNYRW--RG---QPLDEDWKSTVQSINISLAIQ 935 (1255)
Q Consensus 877 v~~~~qd~~~~~vl~~~A~~~~~~l~~~~~~----------------~~~~~--~~---~~v~l~L~G~hq~~Na~lAia 935 (1255)
|++. +++...+++... +++++.++.. ..+.+ .+ ..+.++++|.||++|+++|++
T Consensus 227 V~n~-dd~~~~~~~~~~----~~~~~~~g~~~~~d~~~~~~~~~~~~~~f~~~~~~~~~~~~~l~l~G~hn~~NalaAia 301 (475)
T 1p3d_A 227 VMCA-DDPVLMELVPKV----GRQVITYGFSEQADYRIEDYEQTGFQGHYTVICPNNERINVLLNVPGKHNALNATAALA 301 (475)
T ss_dssp EEET-TCHHHHHHHHHH----CSEEEEEESSTTCSEEEEEEEEETTEEEEEEECTTCCEEEEEESSCSHHHHHHHHHHHH
T ss_pred EEEC-CCHHHHHHHHhc----CCCEEEEecCCCCcEEEEEEEEcCCceEEEEEECCCeEEEEEEcCccHHHHHHHHHHHH
Confidence 9997 555555544432 2344443210 01111 11 146789999999999999999
Q ss_pred HHHHHHHhhcchhhhhhHHHHHhhhhhcCCCCCCCCCCCCCCcCCCCCCCCCccccCCCCCCCCcccccccccCCCCCCC
Q psy15432 936 LAYLWMFRMNKSAELKSVIDKFLAEMRVSSPNETPGGQGHLSSCETPGGQGHLSFSETPGGQGHLTGNQSSLLMGPHFEI 1015 (1255)
Q Consensus 936 la~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~i 1015 (1255)
++.. +|+
T Consensus 302 ~~~~-------------------------------------------------------------------------lgi 308 (475)
T 1p3d_A 302 VAKE-------------------------------------------------------------------------EGI 308 (475)
T ss_dssp HHHH-------------------------------------------------------------------------TTC
T ss_pred HHHH-------------------------------------------------------------------------cCC
Confidence 8876 466
Q ss_pred C-HHHHHHHhcCC-CCCcEEEEee-----cCcEEEEEcCcCHHHHHHHHHHHHhhhccccCCCcccCCCCCcEEEEEecC
Q psy15432 1016 D-PKTYRGIKACV-WPGRVQVIRK-----NNFKYFLDGAHTTDSIELCAKWFLRKSEAEANPTQSKSSNVIQRILVFNVT 1088 (1255)
Q Consensus 1016 ~-~~i~~gL~~~~-~pGR~E~v~~-----~~~~vilDgAHNP~S~~a~l~~l~~~~~~~~~~~~~~~~~~~~~vlVfg~~ 1088 (1255)
+ +.+.+||++|+ ||||||++.. ++++||+||||||+++++++++++.... .+++++|||++
T Consensus 309 ~~~~i~~~L~~f~~~~gR~e~v~~~~~~~~~~~vi~DyaHnp~~~~a~l~al~~~~~------------~~~i~~v~g~~ 376 (475)
T 1p3d_A 309 ANEAILEALADFQGAGRRFDQLGEFIRPNGKVRLVDDYGHHPTEVGVTIKAAREGWG------------DKRIVMIFQPH 376 (475)
T ss_dssp CHHHHHHHHHTCCCBTTSSEEEEEEEETTEEEEEEEECCCSHHHHHHHHHHHHHHHC------------SSCEEEEECCB
T ss_pred CHHHHHHHHHhCCCCCCCCEEEecccccCCCcEEEEeCCCCHHHHHHHHHHHHhhcC------------CCeEEEEECCC
Confidence 6 67999999999 9999999986 2678999999999999999999987531 14688999974
Q ss_pred C-CC--C-hhhhhhhhhcCCCCcEEEEcCCCCcccccccCCCCCcc---ccc-c--cccccCCHHHHHHHHHHHcCCCce
Q psy15432 1089 G-ER--D-PTKLLSPLLQSNQFEYILVTPNILTNEIRWRGQPLDED---WKS-T--VQSINISLAIQLAYLWMFRMNKSA 1158 (1255)
Q Consensus 1089 ~-dr--D-~~~ll~~L~~~~~~d~vi~t~~~~~~~~~~~~~~~~~~---~~~-d--~~~~~~~~~~~~~~~~~~~~~~~~ 1158 (1255)
+ +| + ...|.+.+ . .+|.+++|+.++..+.+..+...... +.. . ...+..+.++.++.+.....+.++
T Consensus 377 ~~~r~~~~~~~~~~~~--~-~~d~vi~t~~~~~~e~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~ai~~a~~~a~~gd~ 453 (475)
T 1p3d_A 377 RYSRTRDLFDDFVQVL--S-QVDALIMLDVYAAGEAPIVGADSKSLCRSIRNLGKVDPILVSDTSQLGDVLDQIIQDGDL 453 (475)
T ss_dssp CHHHHHHTHHHHHHHH--T-TSSEEEEECCBCTTCCCCTTCSHHHHHHHHHHHTSCCCEEESCGGGHHHHHHHHCCTTCE
T ss_pred CCccHHHHHHHHHHHH--H-hCCEEEEcCCcCCCCCCCCCCCHHHHHHHHHhhCCCceEEECCHHHHHHHHHHhCCCCCE
Confidence 3 33 3 24444544 3 48999999877665432211111111 111 0 112335888899999998899999
Q ss_pred EEeecCCCC
Q psy15432 1159 ELKRNQSSL 1167 (1255)
Q Consensus 1159 ~l~~~~~~~ 1167 (1255)
+|++|++|+
T Consensus 454 VLv~G~Gs~ 462 (475)
T 1p3d_A 454 ILAQGAGSV 462 (475)
T ss_dssp EEEECSSTH
T ss_pred EEEECCCCH
Confidence 999998875
|
| >2f00_A UDP-N-acetylmuramate--L-alanine ligase; amide bond ligase, ATPase, bacterial cell WALL; 2.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-37 Score=374.98 Aligned_cols=313 Identities=15% Similarity=0.094 Sum_probs=222.8
Q ss_pred ceEEEecCCCCCccHHHHHHHHHHHCCCCeEEEcCcccccccceeeeCCeecChhhhhhHHHHHHHHHHHHhhcCCCCCc
Q psy15432 720 LNVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTKYFWTVYNALHAKRKHAEDMPA 799 (1255)
Q Consensus 720 l~vIhVTGTnGKgST~aml~sILr~~G~rtGl~tSPhL~~~~ERI~InG~pIs~~~f~~~~~~v~~~l~~~~~~~~~~pt 799 (1255)
.++|||||||||||||+|+++||+++|++ || +.++|...+.....
T Consensus 119 ~~vI~VTGTnGKTTTt~ml~~iL~~~G~~------p~-------~~igg~~~~~~~~~---------------------- 163 (491)
T 2f00_A 119 RHGIAIAGTHGKTTTTAMVSSIYAEAGLD------PT-------FVNGGLVKAAGVHA---------------------- 163 (491)
T ss_dssp SEEEEEESSSCHHHHHHHHHHHHHHTTCC------CE-------EEEEEEETTTTEEE----------------------
T ss_pred CCEEEEECCCCHHHHHHHHHHHHHhCCCC------CE-------EEECCeeccccccc----------------------
Confidence 48999999999999999999999999986 43 24555554322200
Q ss_pred HHHHHHHHHHHhhhcCCCCEEEEecccCCccccccccCCCcEEEEcCCCchhhhhcCCCHHHHHHHHhccc---cCCceE
Q psy15432 800 YFKFLTVMSFYVFVKEKPDAVIMEVGIGGRYDNTNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIM---KPNCIA 876 (1255)
Q Consensus 800 ~Fe~lT~mAf~~F~~~~vD~aVlEVG~GGr~D~TNvi~~P~VavITnIg~DHl~~LG~TleeIA~~KagI~---K~g~~a 876 (1255)
...++|++|+|+| ++|.++...+|+++|||||+.||+++||+|+|+|+++|++|+ ++++++
T Consensus 164 -------------~~~~~d~~VlE~~---~~~~~~~~~~p~vaviTNI~~DHld~~G~t~e~ia~aK~~i~~~~~~~~~~ 227 (491)
T 2f00_A 164 -------------RLGHGRYLIAEAD---ESDASFLHLQPMVAIVTNIEADHMDTYQGDFENLKQTFINFLHNLPFYGRA 227 (491)
T ss_dssp -------------ECCSSSEEEEECC---CTTSGGGGCCCSEEEECCCCSCSGGGTTTCHHHHHHHHHHHHTTSCTTCEE
T ss_pred -------------cCCCCCEEEEEeC---CCccchhcCCCCEEEEcCCChhhhhhhcCCHHHHHHHHHHHHHhCCCCCEE
Confidence 1247899999996 678888877899999999999999999779999999999887 577889
Q ss_pred EEccCCCChhHHHHHHHhhhcCCeEEEcCCc----------------cceec--cC---CccccCCCchhHHHHHHHHHH
Q psy15432 877 VTSANQRGPCKQILLETSRALNCVLLEAPSI----------------LNYRW--RG---QPLDEDWKSTVQSINISLAIQ 935 (1255)
Q Consensus 877 v~~~~qd~~~~~vl~~~A~~~~~~l~~~~~~----------------~~~~~--~~---~~v~l~L~G~hq~~Na~lAia 935 (1255)
|++. +++...+++. ..+++++.++.. ..+.+ .+ ..+.++++|.||++|+++|++
T Consensus 228 V~n~-dd~~~~~~~~----~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~hn~~NalaAia 302 (491)
T 2f00_A 228 VMCV-DDPVIRELLP----RVGRQTTTYGFSEDADVRVEDYQQIGPQGHFTLLRQDKEPMRVTLNAPGRHNALNAAAAVA 302 (491)
T ss_dssp EEET-TSHHHHHHGG----GCCSEEEEEESSTTCSEEEEEEEEETTEEEEEEECTTSCCEEEEESSCSHHHHHHHHHHHH
T ss_pred EEEC-CCHHHHHHHH----hcCCcEEEEeCCCCCCEEEEEEEEcCCceEEEEEECCceEEEEEEccchHHHHHHHHHHHH
Confidence 9987 5544443332 223455444310 01211 11 146789999999999999999
Q ss_pred HHHHHHHhhcchhhhhhHHHHHhhhhhcCCCCCCCCCCCCCCcCCCCCCCCCccccCCCCCCCCcccccccccCCCCCCC
Q psy15432 936 LAYLWMFRMNKSAELKSVIDKFLAEMRVSSPNETPGGQGHLSSCETPGGQGHLSFSETPGGQGHLTGNQSSLLMGPHFEI 1015 (1255)
Q Consensus 936 la~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~i 1015 (1255)
++.. +|+
T Consensus 303 ~a~~-------------------------------------------------------------------------lgi 309 (491)
T 2f00_A 303 VATE-------------------------------------------------------------------------EGI 309 (491)
T ss_dssp HHHH-------------------------------------------------------------------------HTC
T ss_pred HHHH-------------------------------------------------------------------------cCC
Confidence 8876 356
Q ss_pred C-HHHHHHHhcCC-CCCcEEEEee---------cC-cEEEEEcCcCHHHHHHHHHHHHhhhccccCCCcccCCCCCcEEE
Q psy15432 1016 D-PKTYRGIKACV-WPGRVQVIRK---------NN-FKYFLDGAHTTDSIELCAKWFLRKSEAEANPTQSKSSNVIQRIL 1083 (1255)
Q Consensus 1016 ~-~~i~~gL~~~~-~pGR~E~v~~---------~~-~~vilDgAHNP~S~~a~l~~l~~~~~~~~~~~~~~~~~~~~~vl 1083 (1255)
+ +.|.+||++|+ ||||||++.. .+ ++||+||||||+++++++++++.... .+++++
T Consensus 310 ~~~~i~~~L~~f~~~~gR~e~v~~~~~~~~~~~~g~~~vi~DyaHnp~~~~a~l~al~~~~~------------~~~i~~ 377 (491)
T 2f00_A 310 DDEAILRALESFQGTGRRFDFLGEFPLEPVNGKSGTAMLVDDYGHHPTEVDATIKAARAGWP------------DKNLVM 377 (491)
T ss_dssp CHHHHHHHHHTCCCBTTSSEEEEEEESSSSSSCSSEEEEEEECCCSHHHHHHHHHHHHTTCC------------SSEEEE
T ss_pred CHHHHHHHHHhCCCCCCCCEEEccccccccccCCCcEEEEEeCCCCHHHHHHHHHHHHhhcC------------CCeEEE
Confidence 6 67999999999 9999999986 26 78999999999999999999986421 146789
Q ss_pred EEecC---CCCCh-hhhhhhhhcCCCCcEEEEcCCCCcccccccCCC---CCccccc-c--cccccCCHHHHHHHHHHHc
Q psy15432 1084 VFNVT---GERDP-TKLLSPLLQSNQFEYILVTPNILTNEIRWRGQP---LDEDWKS-T--VQSINISLAIQLAYLWMFR 1153 (1255)
Q Consensus 1084 Vfg~~---~drD~-~~ll~~L~~~~~~d~vi~t~~~~~~~~~~~~~~---~~~~~~~-d--~~~~~~~~~~~~~~~~~~~ 1153 (1255)
|||++ .+++. ..|.+.+ . .+|.+++|+.++..+.+..+.. +...+.. . ...+..+.++.++.+....
T Consensus 378 v~g~~~~~r~k~~~~~~~~~~--~-~~d~vilt~~~~~~e~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~ai~~a~~~a 454 (491)
T 2f00_A 378 LFQPHRFTRTRDLYDDFANVL--T-QVDTLLMLEVYPAGEAPIPGADSRSLCRTIRGRGKIDPILVPDPARVAEMLAPVL 454 (491)
T ss_dssp EECCBCHHHHTTTHHHHHHHH--T-TSSEEEECCCBCSSSCCCTTSSHHHHTTC-------CCEECCCSSCCHHHHGGGC
T ss_pred EECCCCCcchHHHHHHHHHHH--H-hCCEEEEcCCcCCCCCCCCCCCHHHHHHHHHhhCCCceEEeCCHHHHHHHHHHhC
Confidence 99963 33453 4555545 3 4899999987765543211111 0111111 0 1122357777888888888
Q ss_pred CCCceEEeecCCCCCCccccccccc
Q psy15432 1154 MNKSAELKRNQSSLPMGPHFEIDPK 1178 (1255)
Q Consensus 1154 ~~~~~~l~~~~~~~~~~~~~~~~~~ 1178 (1255)
.+.+++|++|+++ ++.+-+.+..
T Consensus 455 ~~gd~VLv~gaGs--l~~v~~~l~~ 477 (491)
T 2f00_A 455 TGNDLILVQGAGN--IGKIARSLAE 477 (491)
T ss_dssp CSEEEEEEECSTT--HHHHHHHHHH
T ss_pred CCCCEEEEECCCC--HHHHHHHHHH
Confidence 8889999999887 3444444433
|
| >1j6u_A UDP-N-acetylmuramate-alanine ligase MURC; structural genomics, TM0231, JCSG, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: c.5.1.1 c.59.1.1 c.72.2.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-37 Score=367.96 Aligned_cols=313 Identities=15% Similarity=0.051 Sum_probs=211.9
Q ss_pred cceEEEecCCCCCccHHHHHHHHHHHCCCCeEEEcCccccccc-ceeeeCCeecChhhhhhHHHHHHHHHHHHhhcCCCC
Q psy15432 719 KLNVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVR-ERIKLNGEPISYDKFTKYFWTVYNALHAKRKHAEDM 797 (1255)
Q Consensus 719 ~l~vIhVTGTnGKgST~aml~sILr~~G~rtGl~tSPhL~~~~-ERI~InG~pIs~~~f~~~~~~v~~~l~~~~~~~~~~ 797 (1255)
++++|||||||||||||+|+++||+++|+++|+|++|++.+++ ++++++
T Consensus 113 ~~~vI~VTGTnGKTTTt~ml~~iL~~~G~~~~~~~~g~~~~~g~~~~~~~------------------------------ 162 (469)
T 1j6u_A 113 KKEEFAVTGTDGKTTTTAMVAHVLKHLRKSPTVFLGGIMDSLEHGNYEKG------------------------------ 162 (469)
T ss_dssp CCCEEEEECSSSHHHHHHHHHHHHHHTTCCCEEECSSCCTTSTTSSEECC------------------------------
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHcCCCceEEECCeecccCccccccC------------------------------
Confidence 3589999999999999999999999999999999999988887 777531
Q ss_pred CcHHHHHHHHHHHhhhcCCCCEEEEecccCCccccccccCCCcEEEEcCCCchhhhhcCCCHHHHHHHHhccccCCceEE
Q psy15432 798 PAYFKFLTVMSFYVFVKEKPDAVIMEVGIGGRYDNTNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIMKPNCIAV 877 (1255)
Q Consensus 798 pt~Fe~lT~mAf~~F~~~~vD~aVlEVG~GGr~D~TNvi~~P~VavITnIg~DHl~~LG~TleeIA~~KagI~K~g~~av 877 (1255)
+.| +|+|+|+. |.++...+|+++|||||+.||+++||+|+|+|+++|..+++....+|
T Consensus 163 ------------------~~~-~V~E~~~~---~~~~~~~~p~vaviTNI~~DHld~~g~t~e~ia~ak~~~~~~~~~~V 220 (469)
T 1j6u_A 163 ------------------NGP-VVYELDES---EEFFSEFSPNYLIITNARGDHLENYGNSLTRYRSAFEKISRNTDLVV 220 (469)
T ss_dssp ------------------SSC-EEEEECTT---SGGGGGCCCSEEEECCCCCCCGGGGTTCHHHHHHHHHHHHHTCSEEE
T ss_pred ------------------CCC-EEEECCCc---cCccccccCCEEEEcCCCcchhhhhcCHHHHHHHHHHHHHhhCCEEE
Confidence 236 89999765 66776668999999999999999999779999999998876433677
Q ss_pred EccCCCChhHHHHHHHhhhcC---CeEEE----cCCc-cceec--cC---CccccCCCchhHHHHHHHHHHHHHHHHHhh
Q psy15432 878 TSANQRGPCKQILLETSRALN---CVLLE----APSI-LNYRW--RG---QPLDEDWKSTVQSINISLAIQLAYLWMFRM 944 (1255)
Q Consensus 878 ~~~~qd~~~~~vl~~~A~~~~---~~l~~----~~~~-~~~~~--~~---~~v~l~L~G~hq~~Na~lAiala~~~l~~~ 944 (1255)
++. +++...++ .....+ +.+.. .... ..+.+ .+ ..+.++++|.||++|+++|++++..
T Consensus 221 ~n~-dd~~~~~~---~~~~~g~~~~d~~~~~~~~~~~~~~f~~~~~~~~~~~~~l~l~G~hn~~NalaAia~a~~----- 291 (469)
T 1j6u_A 221 TFA-EDELTSHL---GDVTFGVKKGTYTLEMRSASRAEQKAMVEKNGKRYLELKLKVPGFHNVLNALAVIALFDS----- 291 (469)
T ss_dssp EET-TCTTTGGG---CSEEECSSSSSEEEEEEEECSSCEEEEEEETTEEEEEEEESSCSHHHHHHHHHHHHHHHH-----
T ss_pred EEC-CChhhccc---eEEEEECCCceEEEEEEECCCCCEEEEEEECCeEEEEEEecCcCHHHHHHHHHHHHHHHH-----
Confidence 776 45543321 000000 11111 0000 11111 11 1467899999999999999998876
Q ss_pred cchhhhhhHHHHHhhhhhcCCCCCCCCCCCCCCcCCCCCCCCCccccCCCCCCCCcccccccccCCCCCCCC-HHHHHHH
Q psy15432 945 NKSAELKSVIDKFLAEMRVSSPNETPGGQGHLSSCETPGGQGHLSFSETPGGQGHLTGNQSSLLMGPHFEID-PKTYRGI 1023 (1255)
Q Consensus 945 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~i~-~~i~~gL 1023 (1255)
+|++ +.+.+||
T Consensus 292 --------------------------------------------------------------------lgi~~~~i~~~L 303 (469)
T 1j6u_A 292 --------------------------------------------------------------------LGYDLAPVLEAL 303 (469)
T ss_dssp --------------------------------------------------------------------TTCCHHHHHHHH
T ss_pred --------------------------------------------------------------------cCCCHHHHHHHH
Confidence 4566 6799999
Q ss_pred hcCC-CCCcEEEE--e-ecCcEEEEEcCcCHHHHHHHHHHHHhhhccccCCCcccCCCCCcEEEEEec---CCCCChhhh
Q psy15432 1024 KACV-WPGRVQVI--R-KNNFKYFLDGAHTTDSIELCAKWFLRKSEAEANPTQSKSSNVIQRILVFNV---TGERDPTKL 1096 (1255)
Q Consensus 1024 ~~~~-~pGR~E~v--~-~~~~~vilDgAHNP~S~~a~l~~l~~~~~~~~~~~~~~~~~~~~~vlVfg~---~~drD~~~l 1096 (1255)
++|+ ||||||++ . .++++||+||||||++++++++++++... .+++++|||+ .+++|....
T Consensus 304 ~~f~g~~gR~e~v~~~~~~g~~vi~D~aHnp~~~~a~l~al~~~~~------------~~~i~~I~g~g~~~r~~~~~~~ 371 (469)
T 1j6u_A 304 EEFRGVHRRFSIAFHDPETNIYVIDDYAHTPDEIRNLLQTAKEVFE------------NEKIVVIFQPHRYSRLEREDGN 371 (469)
T ss_dssp HHCCCCTTSSEEEEEETTTTEEEEEECCCSHHHHHHHHHHHHHHCS------------SSEEEEEECCBC--------CH
T ss_pred HhCCCCCCCcEEEcccccCCcEEEEeCCCCHHHHHHHHHHHHHhcC------------CCcEEEEEcCCCCCccHHHHHH
Confidence 9999 99999999 4 35788999999999999999999985321 1467899974 344554444
Q ss_pred hhhhhcCCCCcEEEEcCCCCcccccccCCCCCcc---cccc--cccccCCHHHHHHHHHHHcCCCceEEeecCCCCCC--
Q psy15432 1097 LSPLLQSNQFEYILVTPNILTNEIRWRGQPLDED---WKST--VQSINISLAIQLAYLWMFRMNKSAELKRNQSSLPM-- 1169 (1255)
Q Consensus 1097 l~~L~~~~~~d~vi~t~~~~~~~~~~~~~~~~~~---~~~d--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-- 1169 (1255)
+..+ .. .+|.+++++..+..+.+..+.+.... +... ......+.++.++.+ ...+.+++|++|++|+.+
T Consensus 372 l~~~-~~-~~d~vil~~~~~~~e~p~~g~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~--~a~~gD~VLv~g~Gs~~~~~ 447 (469)
T 1j6u_A 372 FAKA-LQ-LADEVVVTEVYDAFEEKKNGISGKMIWDSLKSLGKEAYFVEKLPELEKVI--SVSENTVFLFVGAGDIIYSS 447 (469)
T ss_dssp HHHH-HT-TSSEEEECCCBC---------CHHHHHHHHHHTTCCEEECCSGGGHHHHC--CCCSSEEEEEECSSTHHHHH
T ss_pred HHHH-Hh-cCCEEEEcccCCCCCCcccCcCHHHHHHHHHhcCCcEEEECCHHHHHHHh--hCCCCCEEEEECCCchhHHH
Confidence 4444 13 48999999876544322111111111 1110 011223566655544 556678999999988766
Q ss_pred ccccccc
Q psy15432 1170 GPHFEID 1176 (1255)
Q Consensus 1170 ~~~~~~~ 1176 (1255)
+.+.+.+
T Consensus 448 ~~l~~~l 454 (469)
T 1j6u_A 448 RRFVERY 454 (469)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444444
|
| >4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-36 Score=362.86 Aligned_cols=318 Identities=14% Similarity=0.118 Sum_probs=220.7
Q ss_pred cEEEEcCCCChhHHHHHHHHHHHHCCCCeEEEcCCcccccceeEEeCCeecChhhhhhHHHHHHHHHHhhhhccCCcchH
Q psy15432 109 NVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTKYFWTVYNALHAKRKHAEDMPAY 188 (1255)
Q Consensus 109 ~vIhVtGTnGKgST~a~l~sIL~~~G~k~Gl~tSPhL~~~rERI~InG~~is~~~ft~~~~~v~~~l~~~~~~~~~~p~~ 188 (1255)
++|+||||||||||+.|+++||+++|++....+...+..+ |.+.
T Consensus 123 ~~IaVTGTnGKTTTt~ml~~iL~~~g~~~~~~~gg~~~~~-------g~~~----------------------------- 166 (494)
T 4hv4_A 123 HGIAVAGTHGKTTTTAMLSSIYAEAGLDPTFVNGGLVKAA-------GTHA----------------------------- 166 (494)
T ss_dssp EEEEEECSSSHHHHHHHHHHHHHHTTCCCEEEEEEEETTT-------TEEE-----------------------------
T ss_pred CEEEEecCCChHHHHHHHHHHHHhcCCCCEEEECCccccc-------cccc-----------------------------
Confidence 6999999999999999999999999986432221110000 1000
Q ss_pred HHHHHHHhhhhhhccCCCEEEEeeccCCccccccccCCccEEEEcCCCcchhhhcCCCHHHHHHHHHcccCC---Cceee
Q psy15432 189 FKFLTVMSFYVFVKEKPDAVIMEVGIGGRYDNTNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIMKP---NCIAV 265 (1255)
Q Consensus 189 Fe~Lt~~A~~~F~~~~vD~aVlEvG~GGr~D~tnii~~P~v~vITnIg~DHld~lG~Tle~Ia~~KagI~k~---g~~~v 265 (1255)
.-.+.|++|+|+|+++ .+....+|+++|||||+.||+|+||.|+|+|+.+|++|++. +..+|
T Consensus 167 ------------~~~~~d~~VlE~~e~~---~s~~~~~P~iaVITNI~~DHld~~G~t~e~~a~aK~~i~~~~~~~g~~V 231 (494)
T 4hv4_A 167 ------------RLGSSRYLIAEADESD---ASFLHLQPMVAIVTNIEADHMDTYQGDFENLKQTFINFLHNLPFYGRAV 231 (494)
T ss_dssp ------------ECCSSSEEEEECCCGG---GGGGGCCCSEEEECCCCCSSCCSSTTHHHHHHHHHHHHHTTSCTTCEEE
T ss_pred ------------ccCCCcEEEEEccccc---cccccccCCEEEEcCCCHHHhhhhccCHHHHHHHHHHHHhcCCCCCEEE
Confidence 1135799999999654 44455589999999999999999966999999999999964 56778
Q ss_pred eccCCCchHHHHHHHhhhccCceEEEcCCcce--------------eeec--C---cccccCCCchhHHhhHHHHHHHHH
Q psy15432 266 TSANQRGPCKQILLETSRALNCVLLEAPSILN--------------YRWR--G---QPLDEDWKSTVQSINISLAIQLAY 326 (1255)
Q Consensus 266 ~~~~q~~e~~~vl~~~a~~~~~~l~~~~~~~~--------------~~~~--~---~~i~l~l~G~~q~~Na~lAia~a~ 326 (1255)
++. +++....++.+. . ..+..|......+ |.+. + ..+.++++|.||++|+++|++++.
T Consensus 232 ~n~-dd~~~~~~~~~~-~-~~~~~~g~~~~~d~~~~~~~~~~~~~~f~~~~~~~~~~~~~l~l~G~hnv~NalaAia~a~ 308 (494)
T 4hv4_A 232 MCI-DDPVVRELLPRV-G-RHITTYGFSDDADVQIASYRQEGPQGHFTLRRQDKPLIEVTLNAPGRHNALNAAAAVAVAT 308 (494)
T ss_dssp EET-TSHHHHHHGGGC-C-SCEEEEESSTTCSEEEEEEEEETTEEEEEEECTTSCCEEEEESSCSHHHHHHHHHHHHHHH
T ss_pred EEC-CCHHHHHHHHhc-C-CCEEEEecCCCCceEEEEEEEeCCEEEEEEEECCceEEEEEecCCcHHHHHHHHHHHHHHH
Confidence 877 565555443322 1 1112222211111 1111 1 236789999999999999999987
Q ss_pred HHHHhhccchhhhhHHHHhhhhhccCCCCCCCCCCCCCCccCCCCCCCCccccCCCCCCCCccccccccCCCCCCCChHH
Q psy15432 327 LWMFRMNKSAELKSVIDKFLAEMRVSSPNETPGGQGHLSSCETPGGQGHLSFSETPGGQGHLTGNQSSLLMGPHFEIDPK 406 (1255)
Q Consensus 327 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~e~ 406 (1255)
.+ +++ ++.
T Consensus 309 ~l-----------------------------------------------------------------------gi~-~~~ 316 (494)
T 4hv4_A 309 EE-----------------------------------------------------------------------GIE-DED 316 (494)
T ss_dssp HH-----------------------------------------------------------------------TCC-HHH
T ss_pred Hc-----------------------------------------------------------------------CCC-HHH
Confidence 76 667 999
Q ss_pred HHHHHhcCC-CCCceEEEEe----------cCcEEEEccCCCHHHHHHHHHHHHhhhhcccccCccCCCCCCCCCccCCC
Q psy15432 407 TYRGIKACV-WPGRVQVIRK----------NNFKYFLDGAHTTDSIELCAKWFLRKSEAEASSSRSVSSCPLDPTQSKSS 475 (1255)
Q Consensus 407 i~~gL~~~~-~pGR~e~v~~----------~~~~vilDgAHnp~si~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (1255)
|.+||++|+ ||||||++.. +++.||+||||||++++++++++++..++
T Consensus 317 i~~~L~~f~g~~~R~e~v~~~~~~~~~~~~~g~~vi~DyaHnp~~i~a~l~al~~~~~~--------------------- 375 (494)
T 4hv4_A 317 ILRALVGFQGTGRRFDFLGNFPLAPVNGKEGSAMLVDDYGHHPTEVDATIKAARAGWPD--------------------- 375 (494)
T ss_dssp HHHHHHHCCCBTTSSEEEEEEESHHHHSCSSEEEEEEECCCSHHHHHHHHHHHHHHCTT---------------------
T ss_pred HHHHHHhCCCCCCccEEeeeccccccccCCCCeEEEEeCCCCHHHHHHHHHHHHhhcCC---------------------
Confidence 999999999 9999999976 36899999999999999999999875432
Q ss_pred CCccEEEEEecCCCCChhhhhHHhh-ccCCCcEEEEcCCCCCCCCCCCCcCCCCcccccccccccccCCCCCCCCCCCCC
Q psy15432 476 NVIQRILVFNVTGERDPTKLLSPLL-QSNQFEYILVTPNILTNESSPDTQYGGNRTIDRFGVKLDSRTAAPNGGHEPGRP 554 (1255)
Q Consensus 476 ~~~~~ilVfg~~~drD~~~ll~~L~-~~~~~d~vi~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 554 (1255)
+|+++|||+.+++....+...+. .-..+|.+|+|+.++..|.|. ..
T Consensus 376 --~rii~V~g~~~~~r~k~~~~~~~~~~~~aD~vilt~~~~~~e~p~---~g---------------------------- 422 (494)
T 4hv4_A 376 --KRIVMLFQPHRYTRTRDLYDDFANVLSQVDVLLMLDVYAAGEPPI---PG---------------------------- 422 (494)
T ss_dssp --SEEEEEECCBCHHHHHHTHHHHHHHHTTSSEEEEECCBCTTCCCC---TT----------------------------
T ss_pred --CeEEEEEcCCCCCchHHHHHHHHHHHhcCCEEEEeCCcCCccCCc---CC----------------------------
Confidence 27899998654221112222221 114689999999888877641 00
Q ss_pred CCCCCCCCcccCCCCCcccCCCCCCCcccccccccccchhhHHHHHHhhccCCCcEEEcCCHHHHHHHHhccCCCCCceE
Q psy15432 555 NVGQGGGGFQSRSGDNSIRSNANPLSSVDCHNVNDQSNSFHKIATVASALSQRSKVVEFSSVLDTYNFKYGLDPSKEYHI 634 (1255)
Q Consensus 555 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~si~~ai~~~~~~~~~~~~~v 634 (1255)
.+.+.|++....... ..+..++|+++|++.+.... .+++.|
T Consensus 423 -------------------------------------~~~~~l~~~~~~~g~-~~~~~~~~~~eAv~~a~~~a-~~gDvV 463 (494)
T 4hv4_A 423 -------------------------------------ADSRALCRTIRNRGK-LDPILVPDSESAPEMLAQIL-NGEDLI 463 (494)
T ss_dssp -------------------------------------CSHHHHHHHHHTTTS-CCCEEECCTTTHHHHHHHHC-CTTEEE
T ss_pred -------------------------------------ccHHHHHHHHHhhCC-CCeEEeCCHHHHHHHHHHhC-CCCCEE
Confidence 001224444433221 24678899999999999886 567889
Q ss_pred EEec--ccccccc
Q psy15432 635 LVTG--SLHLVGA 645 (1255)
Q Consensus 635 lvtG--SlhLVGg 645 (1255)
|++| |++.++.
T Consensus 464 L~~GaG~~~~~~~ 476 (494)
T 4hv4_A 464 LVQGAGNIGKIAR 476 (494)
T ss_dssp EEECSSTHHHHHH
T ss_pred EEECCCCHHHHHH
Confidence 9988 4444443
|
| >3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-36 Score=357.34 Aligned_cols=298 Identities=15% Similarity=0.136 Sum_probs=219.2
Q ss_pred eEEEecCCCCCccHHHHHHHHHHHCCCCeEEEcCcccccccceeeeCCeecChhhhhhHHHHHHHHHHHHhhcCCCCCcH
Q psy15432 721 NVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTKYFWTVYNALHAKRKHAEDMPAY 800 (1255)
Q Consensus 721 ~vIhVTGTnGKgST~aml~sILr~~G~rtGl~tSPhL~~~~ERI~InG~pIs~~~f~~~~~~v~~~l~~~~~~~~~~pt~ 800 (1255)
++|+||||||||||++|+++||+++|+++.+.++. |.|++...
T Consensus 113 ~~IaVTGTnGKTTTt~ml~~iL~~~g~~~~~~Gni------------g~~~~~~~------------------------- 155 (451)
T 3lk7_A 113 QLIGITGSNGKTTTTTMIAEVLNAGGQRGLLAGNI------------GFPASEVV------------------------- 155 (451)
T ss_dssp EEEEEECSSCHHHHHHHHHHHHHHTTCCEEEEETS------------SSCHHHHT-------------------------
T ss_pred CEEEEECCCCHHHHHHHHHHHHHhcCCCEEEeeec------------Chhhhhhh-------------------------
Confidence 89999999999999999999999999988654432 44432110
Q ss_pred HHHHHHHHHHhhhcCCCCEEEEecccCCccccccccCCCcEEEEcCCCchhhhhcCCCHHHHHHHHhccccC---CceEE
Q psy15432 801 FKFLTVMSFYVFVKEKPDAVIMEVGIGGRYDNTNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIMKP---NCIAV 877 (1255)
Q Consensus 801 Fe~lT~mAf~~F~~~~vD~aVlEVG~GGr~D~TNvi~~P~VavITnIg~DHl~~LG~TleeIA~~KagI~K~---g~~av 877 (1255)
....++|++|+|+|+++ +|.+|.+ +|+++|||||+.||+++|| |+|+|+++|++||+. ++.+|
T Consensus 156 -----------~~~~~~d~~VlE~~s~~-l~~~~~~-~p~iaviTNI~~DHld~~g-t~e~i~~aK~~i~~~~~~~~~~V 221 (451)
T 3lk7_A 156 -----------QAANDKDTLVMELSSFQ-LMGVKEF-RPHIAVITNLMPTHLDYHG-SFEDYVAAKWNIQNQMSSSDFLV 221 (451)
T ss_dssp -----------TTCCTTCEEEEECCHHH-HTTCSSC-CCSEEEECCCCSCCHHHHS-SHHHHHHHHHGGGTTCCTTSEEE
T ss_pred -----------hcCCCCCEEEEECCccc-ccccccc-CCCEEEEcCCChhHhhhcC-CHHHHHHHHHHHHhcCCCCCEEE
Confidence 01246899999999976 5788887 7999999999999999999 999999999999975 45688
Q ss_pred EccCCCChhHHHHHHHhhhcCCeEEEcCCcc----------ceeccCC----ccccCCCchhHHHHHHHHHHHHHHHHHh
Q psy15432 878 TSANQRGPCKQILLETSRALNCVLLEAPSIL----------NYRWRGQ----PLDEDWKSTVQSINISLAIQLAYLWMFR 943 (1255)
Q Consensus 878 ~~~~qd~~~~~vl~~~A~~~~~~l~~~~~~~----------~~~~~~~----~v~l~L~G~hq~~Na~lAiala~~~l~~ 943 (1255)
++. +|+...+ .+++.+++++.++... .+.+.+. .+.++++|.||++|+++|++++..
T Consensus 222 ~n~-dd~~~~~----~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~hn~~NalaAia~a~~---- 292 (451)
T 3lk7_A 222 LNF-NQGISKE----LAKTTKATIVPFSTTEKVDGAYVQDKQLFYKGENIMSVDDIGVPGSHNVENALATIAVAKL---- 292 (451)
T ss_dssp EET-TSHHHHH----HHTTCSSEEEEEESSSCCSSEEEETTEEEETTEEEEEGGGSSSCSHHHHHHHHHHHHHHHH----
T ss_pred EEC-CcHHHHH----HHhhcCCeEEEEccCCCcCCEEEECCEEEECCcEEeeccccCCCcHHHHHHHHHHHHHHHH----
Confidence 887 4444333 2333455655553211 1112221 357899999999999999998876
Q ss_pred hcchhhhhhHHHHHhhhhhcCCCCCCCCCCCCCCcCCCCCCCCCccccCCCCCCCCcccccccccCCCCCCCC-HHHHHH
Q psy15432 944 MNKSAELKSVIDKFLAEMRVSSPNETPGGQGHLSSCETPGGQGHLSFSETPGGQGHLTGNQSSLLMGPHFEID-PKTYRG 1022 (1255)
Q Consensus 944 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~i~-~~i~~g 1022 (1255)
+|++ +.+.+|
T Consensus 293 ---------------------------------------------------------------------lgi~~~~i~~~ 303 (451)
T 3lk7_A 293 ---------------------------------------------------------------------AGISNQVIRET 303 (451)
T ss_dssp ---------------------------------------------------------------------HTCCHHHHHHH
T ss_pred ---------------------------------------------------------------------cCCCHHHHHHH
Confidence 3566 679999
Q ss_pred HhcCC-CCCcEEEEee-cCcEEEEE-cCcCHHHHHHHHHHHHhhhccccCCCcccCCCCCcEEEEEecCC-CCChhhhhh
Q psy15432 1023 IKACV-WPGRVQVIRK-NNFKYFLD-GAHTTDSIELCAKWFLRKSEAEANPTQSKSSNVIQRILVFNVTG-ERDPTKLLS 1098 (1255)
Q Consensus 1023 L~~~~-~pGR~E~v~~-~~~~vilD-gAHNP~S~~a~l~~l~~~~~~~~~~~~~~~~~~~~~vlVfg~~~-drD~~~ll~ 1098 (1255)
|++|+ ||||||++.. ++++||+| |||||+|+.++++.+.. +++++|+|.+. ++|.+.+++
T Consensus 304 L~~f~~~~gR~e~v~~~~g~~vi~D~~a~np~a~~~al~~~~~----------------~rii~I~g~~~r~~d~~~l~~ 367 (451)
T 3lk7_A 304 LSNFGGVKHRLQSLGKVHGISFYNDSKSTNILATQKALSGFDN----------------TKVILIAGGLDRGNEFDELIP 367 (451)
T ss_dssp HHHCCCCTTSSEEEEEETTEEEEECTTCCSHHHHHHHHHTSCG----------------GGEEEEECCSCCSCCCGGGHH
T ss_pred HHhCCCCCCcEEEEeeeCCcEEEEeCCCCCHHHHHHHHHhCCC----------------CCEEEEECCCCCCCCHHHHHH
Confidence 99998 9999999975 57789999 79999999998875421 35788998665 688889888
Q ss_pred hhhcCCCCcEEEEcCCCCcccccccCCCCCcccccccccccCCHHHHHHHHHHHcCCCceEEee-cCCCCCCccc
Q psy15432 1099 PLLQSNQFEYILVTPNILTNEIRWRGQPLDEDWKSTVQSINISLAIQLAYLWMFRMNKSAELKR-NQSSLPMGPH 1172 (1255)
Q Consensus 1099 ~L~~~~~~d~vi~t~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~ 1172 (1255)
.+ . . +|.+++++........... . .+....+..+.++.++.+.....+.+++|+. ++.|++|.+-
T Consensus 368 ~l-~-~-~d~vi~~G~~~~~l~~~~~-----~-~g~~~~~~~~~~eAv~~a~~~a~~gD~VLlspa~as~d~f~~ 433 (451)
T 3lk7_A 368 DI-T-G-LKHMVVLGESASRVKRAAQ-----K-AGVTYSDALDVRDAVHKAYEVAQQGDVILLSPANASWDMYKN 433 (451)
T ss_dssp HH-T-T-CSEEEECSTTHHHHHHHHH-----H-TTCCEEECSSHHHHHHHHHHHCCTTCEEEECCSSCSTTTSSS
T ss_pred HH-H-h-cCEEEEECCCHHHHHHHHH-----h-cCCceEEeCCHHHHHHHHHHhCCCCCEEEEcCcCcchhhhhC
Confidence 88 3 3 8999988654322111100 0 0011234468899999998888777666665 6689888743
|
| >3hn7_A UDP-N-acetylmuramate-L-alanine ligase; ATP-binding, nucleotide-binding, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.65A {Psychrobacter arcticus 273-4} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-34 Score=350.58 Aligned_cols=279 Identities=15% Similarity=0.114 Sum_probs=184.6
Q ss_pred ccEEEEcCCCChhHHHHHHHHHHHHCCCCeEEEcCCcccccceeEEeCCeecChhhhhhHHHHHHHHHHhhhhccCCcch
Q psy15432 108 LNVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTKYFWTVYNALHAKRKHAEDMPA 187 (1255)
Q Consensus 108 l~vIhVtGTnGKgST~a~l~sIL~~~G~k~Gl~tSPhL~~~rERI~InG~~is~~~ft~~~~~v~~~l~~~~~~~~~~p~ 187 (1255)
.++|+||||||||||+.|+++||+++|++++++. +|.+.. .+++-. +..-+...........+
T Consensus 122 ~~vIaVTGTnGKTTTt~li~~iL~~~G~~~~~~i-------------Gg~~~~---~~T~~n-ln~~ig~~~~~~~~~~~ 184 (524)
T 3hn7_A 122 RHVIAVAGTHGKTTTTTMLAWILHYAGIDAGFLI-------------GGVPLV---NTTDTN-LQQVFAHSSYLGTEKDD 184 (524)
T ss_dssp SEEEEEECSSCHHHHHHHHHHHHHHTTCCCEEEC-------------SCCBCC---CSSCHH-HHHHTTSSEECCCCCCS
T ss_pred CcEEEEECCCCHHHHHHHHHHHHHHcCCCceEEE-------------CCEecc---ccCchh-hhhhhhhHHhhCCCccc
Confidence 4799999999999999999999999999987532 222210 111100 00000000000000000
Q ss_pred HHHHHHHHhhhhhhccCCCEEEEeeccC--Ccccc----ccccCCccEEEEcCCCcchhhhcCCCHHHHHHHHHcccC--
Q psy15432 188 YFKFLTVMSFYVFVKEKPDAVIMEVGIG--GRYDN----TNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIMK-- 259 (1255)
Q Consensus 188 ~Fe~Lt~~A~~~F~~~~vD~aVlEvG~G--Gr~D~----tnii~~P~v~vITnIg~DHld~lG~Tle~Ia~~KagI~k-- 259 (1255)
+ ..+.++|++|+|+|+. +..+. ..+ +|+++|||||+.||+|+|| |+|+|+.+|+.|++
T Consensus 185 ~-----------~~~~~~~~~V~E~ss~~~~~~~~~~~~~~~--~P~iaViTNI~~DHLd~~g-s~e~y~~aK~~i~~~~ 250 (524)
T 3hn7_A 185 S-----------DNSVNTGYFVIEADEYDSAFFDKRSKFVHY--RPRTAILNNLEFDHADIFA-DLDAIQTQFHHMVRMI 250 (524)
T ss_dssp S-----------CTTCCCCEEEEECCSCCCBTTBCCCHHHHC--CCSEEEECCCCCC-------CHHHHHHHHHHHHTTS
T ss_pred c-----------cccccCcEEEEECCCCCccccccccceeee--cCCEEEEcCCChHHccccC-CHHHHHHHHHHHHHhC
Confidence 0 0134578999999985 32222 223 8999999999999999999 99999999999997
Q ss_pred -CCceeeeccCCCchHHHHHHHhhhccCceEEEcC--------------------Ccce------------ee--ecC--
Q psy15432 260 -PNCIAVTSANQRGPCKQILLETSRALNCVLLEAP--------------------SILN------------YR--WRG-- 302 (1255)
Q Consensus 260 -~g~~~v~~~~q~~e~~~vl~~~a~~~~~~l~~~~--------------------~~~~------------~~--~~~-- 302 (1255)
++..+|++. +|+.....+.+.+. .....|... ...+ |. ..+
T Consensus 251 ~~~g~~VlN~-DD~~~~~~~~~~~~-~~v~~fg~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~~~g~~f~l~~~~~~ 328 (524)
T 3hn7_A 251 PSTGKIIMPA-ATISLEDTLAKGVW-TPIWRTSVIDSTISSVRREDSPLENSQAENSSDWQAELISADGSQFTVSFNDNK 328 (524)
T ss_dssp CTTSEEEEES-SCHHHHHHHHTCCC-SCEEEEEEEC-------------------CCCSEEEEEEETTTTEEEEEETTEE
T ss_pred CCCCEEEEEC-CCHHHHHHHHhccC-CcEEEEecCcccccccccccccccccccCCCCcEEEEEEECCceEEEEEECCcc
Confidence 456777776 55544443332211 111122211 0111 11 111
Q ss_pred ---cccccCCCchhHHhhHHHHHHHHHHHHHhhccchhhhhHHHHhhhhhccCCCCCCCCCCCCCCccCCCCCCCCcccc
Q psy15432 303 ---QPLDEDWKSTVQSINISLAIQLAYLWMFRMNKSAELKSVIDKFLAEMRVSSPNETPGGQGHLSSCETPGGQGHLSFS 379 (1255)
Q Consensus 303 ---~~i~l~l~G~~q~~Na~lAia~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (1255)
..+.++++|.||++|+++|++++..+
T Consensus 329 ~~~~~~~l~l~G~hn~~NalaA~a~~~~l--------------------------------------------------- 357 (524)
T 3hn7_A 329 EATALVNWSMSGLHNVNNALVAIAAAYNI--------------------------------------------------- 357 (524)
T ss_dssp EEEEEEECSCCSHHHHHHHHHHHHHHHHT---------------------------------------------------
T ss_pred ceeEEEEeCCCcHHHHHhHHHHHHHHHHc---------------------------------------------------
Confidence 24678999999999999999988764
Q ss_pred CCCCCCCCccccccccCCCCCCCChHHHHHHHhcCC-CCCceEEEEe-cCcEEEEccCCCHHHHHHHHHHHHhhhhcccc
Q psy15432 380 ETPGGQGHLTGNQSSLLMGPHFEIDPKTYRGIKACV-WPGRVQVIRK-NNFKYFLDGAHTTDSIELCAKWFLRKSEAEAS 457 (1255)
Q Consensus 380 ~~~~~~~~~~~~~~~l~~~~~~~l~e~i~~gL~~~~-~pGR~e~v~~-~~~~vilDgAHnp~si~~~l~~l~~~~~~~~~ 457 (1255)
+++ .+.|.++|++|+ ||||||++.. +++.||+|+||||++++++++++++....
T Consensus 358 --------------------gi~-~~~i~~~L~~~~~~~gR~e~~~~~~g~~vi~D~ahnp~~~~a~l~~l~~~~~~--- 413 (524)
T 3hn7_A 358 --------------------GVS-VKTACAALSAFAGIKRRMELIGDVNDILVFDDFAHHPTAITTTLDGAKKKLAD--- 413 (524)
T ss_dssp --------------------TCC-HHHHHHHHHTCCCBTTSSEEEEEETTEEEEEECCCSHHHHHHHHHHHHHHHTT---
T ss_pred --------------------CCC-HHHHHHHHHhCCCCCceEEEEEecCCcEEEEECCCCHHHHHHHHHHHHhhcCC---
Confidence 667 899999999999 9999999975 67899999999999999999999876432
Q ss_pred cCccCCCCCCCCCccCCCCCccEEEEEecC----CCCChhhhhHHhhccCCCcEEEEcCCCCC
Q psy15432 458 SSRSVSSCPLDPTQSKSSNVIQRILVFNVT----GERDPTKLLSPLLQSNQFEYILVTPNILT 516 (1255)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~~~~~~ilVfg~~----~drD~~~ll~~L~~~~~~d~vi~t~~~~~ 516 (1255)
+|+++|||++ .++|..+++..+ ...+|.+|+++++++
T Consensus 414 --------------------~r~i~V~g~~~~~~~~g~~~~~~~~~--~~~aD~vil~~~~~r 454 (524)
T 3hn7_A 414 --------------------RRLWAIIEPRSNTMKMGIHQDSLAQS--ATLADHTLWYEPTGL 454 (524)
T ss_dssp --------------------SCEEEEEECCCCSSCCSCCTTHHHHH--TTTSSEEEEECCTTC
T ss_pred --------------------CCEEEEECCCCcchhhhhhHHHHHHH--HhcCCEEEEcCCCCC
Confidence 2789999984 566777777766 356999999875543
|
| >4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-35 Score=355.42 Aligned_cols=306 Identities=13% Similarity=0.087 Sum_probs=212.7
Q ss_pred eEEEecCCCCCccHHHHHHHHHHHCCCCeEEEcCcccccccceeeeCCeecChhhhhhHHHHHHHHHHHHhhcCCCCCcH
Q psy15432 721 NVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTKYFWTVYNALHAKRKHAEDMPAY 800 (1255)
Q Consensus 721 ~vIhVTGTnGKgST~aml~sILr~~G~rtGl~tSPhL~~~~ERI~InG~pIs~~~f~~~~~~v~~~l~~~~~~~~~~pt~ 800 (1255)
++|+||||||||||++|+++||+++|++........+ + .+ |.+.
T Consensus 123 ~~IaVTGTnGKTTTt~ml~~iL~~~g~~~~~~~gg~~---~-~~---g~~~----------------------------- 166 (494)
T 4hv4_A 123 HGIAVAGTHGKTTTTAMLSSIYAEAGLDPTFVNGGLV---K-AA---GTHA----------------------------- 166 (494)
T ss_dssp EEEEEECSSSHHHHHHHHHHHHHHTTCCCEEEEEEEE---T-TT---TEEE-----------------------------
T ss_pred CEEEEecCCChHHHHHHHHHHHHhcCCCCEEEECCcc---c-cc---cccc-----------------------------
Confidence 6999999999999999999999999986432211110 0 01 1110
Q ss_pred HHHHHHHHHHhhhcCCCCEEEEecccCCccccccccCCCcEEEEcCCCchhhhhcCCCHHHHHHHHhccccC---CceEE
Q psy15432 801 FKFLTVMSFYVFVKEKPDAVIMEVGIGGRYDNTNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIMKP---NCIAV 877 (1255)
Q Consensus 801 Fe~lT~mAf~~F~~~~vD~aVlEVG~GGr~D~TNvi~~P~VavITnIg~DHl~~LG~TleeIA~~KagI~K~---g~~av 877 (1255)
.-.++|++|+|+|+++ .++...+|+++|||||+.||+++||+|+|+|+++|++|++. ++.+|
T Consensus 167 ------------~~~~~d~~VlE~~e~~---~s~~~~~P~iaVITNI~~DHld~~G~t~e~~a~aK~~i~~~~~~~g~~V 231 (494)
T 4hv4_A 167 ------------RLGSSRYLIAEADESD---ASFLHLQPMVAIVTNIEADHMDTYQGDFENLKQTFINFLHNLPFYGRAV 231 (494)
T ss_dssp ------------ECCSSSEEEEECCCGG---GGGGGCCCSEEEECCCCCSSCCSSTTHHHHHHHHHHHHHTTSCTTCEEE
T ss_pred ------------ccCCCcEEEEEccccc---cccccccCCEEEEcCCCHHHhhhhccCHHHHHHHHHHHHhcCCCCCEEE
Confidence 1135799999998664 34445589999999999999999977999999999999964 67888
Q ss_pred EccCCCChhHHHHHHHhhhcCCeEEEcCCc----------------cceec--cC---CccccCCCchhHHHHHHHHHHH
Q psy15432 878 TSANQRGPCKQILLETSRALNCVLLEAPSI----------------LNYRW--RG---QPLDEDWKSTVQSINISLAIQL 936 (1255)
Q Consensus 878 ~~~~qd~~~~~vl~~~A~~~~~~l~~~~~~----------------~~~~~--~~---~~v~l~L~G~hq~~Na~lAial 936 (1255)
++. +|+....++ .+..++++.++.. ..|.+ .+ ..+.++++|.||++|+++|+++
T Consensus 232 ~n~-dd~~~~~~~----~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~f~~~~~~~~~~~~~l~l~G~hnv~NalaAia~ 306 (494)
T 4hv4_A 232 MCI-DDPVVRELL----PRVGRHITTYGFSDDADVQIASYRQEGPQGHFTLRRQDKPLIEVTLNAPGRHNALNAAAAVAV 306 (494)
T ss_dssp EET-TSHHHHHHG----GGCCSCEEEEESSTTCSEEEEEEEEETTEEEEEEECTTSCCEEEEESSCSHHHHHHHHHHHHH
T ss_pred EEC-CCHHHHHHH----HhcCCCEEEEecCCCCceEEEEEEEeCCEEEEEEEECCceEEEEEecCCcHHHHHHHHHHHHH
Confidence 887 554444332 2223444433210 01111 11 2367899999999999999998
Q ss_pred HHHHHHhhcchhhhhhHHHHHhhhhhcCCCCCCCCCCCCCCcCCCCCCCCCccccCCCCCCCCcccccccccCCCCCCCC
Q psy15432 937 AYLWMFRMNKSAELKSVIDKFLAEMRVSSPNETPGGQGHLSSCETPGGQGHLSFSETPGGQGHLTGNQSSLLMGPHFEID 1016 (1255)
Q Consensus 937 a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~i~ 1016 (1255)
+.. +|++
T Consensus 307 a~~-------------------------------------------------------------------------lgi~ 313 (494)
T 4hv4_A 307 ATE-------------------------------------------------------------------------EGIE 313 (494)
T ss_dssp HHH-------------------------------------------------------------------------HTCC
T ss_pred HHH-------------------------------------------------------------------------cCCC
Confidence 876 4566
Q ss_pred -HHHHHHHhcCC-CCCcEEEEee----------cCcEEEEEcCcCHHHHHHHHHHHHhhhccccCCCcccCCCCCcEEEE
Q psy15432 1017 -PKTYRGIKACV-WPGRVQVIRK----------NNFKYFLDGAHTTDSIELCAKWFLRKSEAEANPTQSKSSNVIQRILV 1084 (1255)
Q Consensus 1017 -~~i~~gL~~~~-~pGR~E~v~~----------~~~~vilDgAHNP~S~~a~l~~l~~~~~~~~~~~~~~~~~~~~~vlV 1084 (1255)
+.+.+||++|+ ||||||++.. ++++||+||||||+++++++++++.... .+++++|
T Consensus 314 ~~~i~~~L~~f~g~~~R~e~v~~~~~~~~~~~~~g~~vi~DyaHnp~~i~a~l~al~~~~~------------~~rii~V 381 (494)
T 4hv4_A 314 DEDILRALVGFQGTGRRFDFLGNFPLAPVNGKEGSAMLVDDYGHHPTEVDATIKAARAGWP------------DKRIVML 381 (494)
T ss_dssp HHHHHHHHHHCCCBTTSSEEEEEEESHHHHSCSSEEEEEEECCCSHHHHHHHHHHHHHHCT------------TSEEEEE
T ss_pred HHHHHHHHHhCCCCCCccEEeeeccccccccCCCCeEEEEeCCCCHHHHHHHHHHHHhhcC------------CCeEEEE
Confidence 67999999999 9999999976 3688999999999999999999986531 2478899
Q ss_pred EecCCCCChhhhhhhhh-cCCCCcEEEEcCCCCcccccccCCCCCcc---ccc---ccccccCCHHHHHHHHHHHcCCCc
Q psy15432 1085 FNVTGERDPTKLLSPLL-QSNQFEYILVTPNILTNEIRWRGQPLDED---WKS---TVQSINISLAIQLAYLWMFRMNKS 1157 (1255)
Q Consensus 1085 fg~~~drD~~~ll~~L~-~~~~~d~vi~t~~~~~~~~~~~~~~~~~~---~~~---d~~~~~~~~~~~~~~~~~~~~~~~ 1157 (1255)
||+.++.....++..+. .-..+|.+++|+.++..+.+..+.+.... +.. ....+..+.++.++.+.....+.+
T Consensus 382 ~g~~~~~r~k~~~~~~~~~~~~aD~vilt~~~~~~e~p~~g~~~~~l~~~~~~~g~~~~~~~~~~~eAv~~a~~~a~~gD 461 (494)
T 4hv4_A 382 FQPHRYTRTRDLYDDFANVLSQVDVLLMLDVYAAGEPPIPGADSRALCRTIRNRGKLDPILVPDSESAPEMLAQILNGED 461 (494)
T ss_dssp ECCBCHHHHHHTHHHHHHHHTTSSEEEEECCBCTTCCCCTTCSHHHHHHHHHTTTSCCCEEECCTTTHHHHHHHHCCTTE
T ss_pred EcCCCCCchHHHHHHHHHHHhcCCEEEEeCCcCCccCCcCCccHHHHHHHHHhhCCCCeEEeCCHHHHHHHHHHhCCCCC
Confidence 98654321122222221 01358999999877655433222111111 111 012234578889999999999999
Q ss_pred eEEeecCCCC
Q psy15432 1158 AELKRNQSSL 1167 (1255)
Q Consensus 1158 ~~l~~~~~~~ 1167 (1255)
++|++|++++
T Consensus 462 vVL~~GaG~~ 471 (494)
T 4hv4_A 462 LILVQGAGNI 471 (494)
T ss_dssp EEEEECSSTH
T ss_pred EEEEECCCCH
Confidence 9999999874
|
| >3hn7_A UDP-N-acetylmuramate-L-alanine ligase; ATP-binding, nucleotide-binding, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.65A {Psychrobacter arcticus 273-4} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-35 Score=355.74 Aligned_cols=317 Identities=13% Similarity=0.097 Sum_probs=213.2
Q ss_pred ceEEEecCCCCCccHHHHHHHHHHHCCCCeEEE--------cCcccccccceeeeCCeecChhhhhhHHHHHHHHHHHHh
Q psy15432 720 LNVIHISGTKGKGSTCAYCESILRSHGFSTGFF--------SSPHLIEVRERIKLNGEPISYDKFTKYFWTVYNALHAKR 791 (1255)
Q Consensus 720 l~vIhVTGTnGKgST~aml~sILr~~G~rtGl~--------tSPhL~~~~ERI~InG~pIs~~~f~~~~~~v~~~l~~~~ 791 (1255)
.++|+||||||||||++|+++||+++|+++++. +||. +++..| |.|.....
T Consensus 122 ~~vIaVTGTnGKTTTt~li~~iL~~~G~~~~~~iGg~~~~~~T~~--nln~~i---g~~~~~~~---------------- 180 (524)
T 3hn7_A 122 RHVIAVAGTHGKTTTTTMLAWILHYAGIDAGFLIGGVPLVNTTDT--NLQQVF---AHSSYLGT---------------- 180 (524)
T ss_dssp SEEEEEECSSCHHHHHHHHHHHHHHTTCCCEEECSCCBCCCSSCH--HHHHHT---TSSEECCC----------------
T ss_pred CcEEEEECCCCHHHHHHHHHHHHHHcCCCceEEECCEeccccCch--hhhhhh---hhHHhhCC----------------
Confidence 589999999999999999999999999998743 2222 222222 11110000
Q ss_pred hcCCCCCcHHHHHHHHHHHhhhcCCCCEEEEecccC--Cccccc-cc-cCCCcEEEEcCCCchhhhhcCCCHHHHHHHHh
Q psy15432 792 KHAEDMPAYFKFLTVMSFYVFVKEKPDAVIMEVGIG--GRYDNT-NI-IPNTAVVGITSLGYDHTAVLGNTIEEITMQKA 867 (1255)
Q Consensus 792 ~~~~~~pt~Fe~lT~mAf~~F~~~~vD~aVlEVG~G--Gr~D~T-Nv-i~~P~VavITnIg~DHl~~LG~TleeIA~~Ka 867 (1255)
...++ ..+.++|++|+|+++. +..+.. .+ -.+|+++|||||+.||+++|| |+|+|+.+|+
T Consensus 181 ----~~~~~-----------~~~~~~~~~V~E~ss~~~~~~~~~~~~~~~~P~iaViTNI~~DHLd~~g-s~e~y~~aK~ 244 (524)
T 3hn7_A 181 ----EKDDS-----------DNSVNTGYFVIEADEYDSAFFDKRSKFVHYRPRTAILNNLEFDHADIFA-DLDAIQTQFH 244 (524)
T ss_dssp ----CCCSS-----------CTTCCCCEEEEECCSCCCBTTBCCCHHHHCCCSEEEECCCCCC-------CHHHHHHHHH
T ss_pred ----Ccccc-----------cccccCcEEEEECCCCCccccccccceeeecCCEEEEcCCChHHccccC-CHHHHHHHHH
Confidence 00000 0234578999999985 333321 11 127999999999999999999 9999999999
Q ss_pred cccc---CCceEEEccCCCChhHHHHHHHhhhcCCeEEEcCC----------------------cc------------ce
Q psy15432 868 GIMK---PNCIAVTSANQRGPCKQILLETSRALNCVLLEAPS----------------------IL------------NY 910 (1255)
Q Consensus 868 gI~K---~g~~av~~~~qd~~~~~vl~~~A~~~~~~l~~~~~----------------------~~------------~~ 910 (1255)
.||+ +++.+|++. +|+....++...+ .++++.++. .. .+
T Consensus 245 ~i~~~~~~~g~~VlN~-DD~~~~~~~~~~~---~~~v~~fg~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~~~g~~f 320 (524)
T 3hn7_A 245 HMVRMIPSTGKIIMPA-ATISLEDTLAKGV---WTPIWRTSVIDSTISSVRREDSPLENSQAENSSDWQAELISADGSQF 320 (524)
T ss_dssp HHHTTSCTTSEEEEES-SCHHHHHHHHTCC---CSCEEEEEEEC-------------------CCCSEEEEEEETTTTEE
T ss_pred HHHHhCCCCCEEEEEC-CCHHHHHHHHhcc---CCcEEEEecCcccccccccccccccccccCCCCcEEEEEEECCceEE
Confidence 9996 677888887 4443333332211 122222110 00 11
Q ss_pred --eccC-----CccccCCCchhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHhhhhhcCCCCCCCCCCCCCCcCCCCC
Q psy15432 911 --RWRG-----QPLDEDWKSTVQSINISLAIQLAYLWMFRMNKSAELKSVIDKFLAEMRVSSPNETPGGQGHLSSCETPG 983 (1255)
Q Consensus 911 --~~~~-----~~v~l~L~G~hq~~Na~lAiala~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 983 (1255)
.+.+ ..+.++++|.||++|+++|++++..
T Consensus 321 ~l~~~~~~~~~~~~~l~l~G~hn~~NalaA~a~~~~-------------------------------------------- 356 (524)
T 3hn7_A 321 TVSFNDNKEATALVNWSMSGLHNVNNALVAIAAAYN-------------------------------------------- 356 (524)
T ss_dssp EEEETTEEEEEEEEECSCCSHHHHHHHHHHHHHHHH--------------------------------------------
T ss_pred EEEECCccceeEEEEeCCCcHHHHHhHHHHHHHHHH--------------------------------------------
Confidence 1122 2367899999999999999998876
Q ss_pred CCCCccccCCCCCCCCcccccccccCCCCCCCC-HHHHHHHhcCC-CCCcEEEEee-cCcEEEEEcCcCHHHHHHHHHHH
Q psy15432 984 GQGHLSFSETPGGQGHLTGNQSSLLMGPHFEID-PKTYRGIKACV-WPGRVQVIRK-NNFKYFLDGAHTTDSIELCAKWF 1060 (1255)
Q Consensus 984 ~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~i~-~~i~~gL~~~~-~pGR~E~v~~-~~~~vilDgAHNP~S~~a~l~~l 1060 (1255)
+|++ +.+.+||++|+ ||||||++.. ++++||+|+||||+|++++++++
T Consensus 357 -----------------------------lgi~~~~i~~~L~~~~~~~gR~e~~~~~~g~~vi~D~ahnp~~~~a~l~~l 407 (524)
T 3hn7_A 357 -----------------------------IGVSVKTACAALSAFAGIKRRMELIGDVNDILVFDDFAHHPTAITTTLDGA 407 (524)
T ss_dssp -----------------------------TTCCHHHHHHHHHTCCCBTTSSEEEEEETTEEEEEECCCSHHHHHHHHHHH
T ss_pred -----------------------------cCCCHHHHHHHHHhCCCCCceEEEEEecCCcEEEEECCCCHHHHHHHHHHH
Confidence 4566 67999999999 9999999975 57889999999999999999999
Q ss_pred HhhhccccCCCcccCCCCCcEEEEEecC----CCCChhhhhhhhhcCCCCcEEEEcCCCCcccccccCCCCCcccc----
Q psy15432 1061 LRKSEAEANPTQSKSSNVIQRILVFNVT----GERDPTKLLSPLLQSNQFEYILVTPNILTNEIRWRGQPLDEDWK---- 1132 (1255)
Q Consensus 1061 ~~~~~~~~~~~~~~~~~~~~~vlVfg~~----~drD~~~ll~~L~~~~~~d~vi~t~~~~~~~~~~~~~~~~~~~~---- 1132 (1255)
+.... .+++++|||++ .+++...++..+ ...+|.++++++.+....... +.....
T Consensus 408 ~~~~~------------~~r~i~V~g~~~~~~~~g~~~~~~~~~--~~~aD~vil~~~~~r~~~~~~---l~~~~~~~~~ 470 (524)
T 3hn7_A 408 KKKLA------------DRRLWAIIEPRSNTMKMGIHQDSLAQS--ATLADHTLWYEPTGLEWGLKE---VIDNATIANP 470 (524)
T ss_dssp HHHHT------------TSCEEEEEECCCCSSCCSCCTTHHHHH--TTTSSEEEEECCTTCCCSHHH---HHHHHHHHCG
T ss_pred HhhcC------------CCCEEEEECCCCcchhhhhhHHHHHHH--HhcCCEEEEcCCCCCCCCHHH---HHHHHHhhcc
Confidence 87642 25789999984 566777766666 346899999986643211100 000000
Q ss_pred -cccccccCCHHHHHHHHHHHcCCCceEEeecCCCC
Q psy15432 1133 -STVQSINISLAIQLAYLWMFRMNKSAELKRNQSSL 1167 (1255)
Q Consensus 1133 -~d~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 1167 (1255)
.....+..+.++.++.+.....+++++|++|+++.
T Consensus 471 ~~~~~~~~~~~~eai~~~~~~a~~gD~VLv~GaG~~ 506 (524)
T 3hn7_A 471 SIGSQQVLSSVDDIIKHICTHAKAGDAIVIMSNGGF 506 (524)
T ss_dssp GGCCEEEESCHHHHHHHHHHHCCTTCEEEEEESSCG
T ss_pred CCCCeEEECCHHHHHHHHHHhCCCCCEEEEEcCCCH
Confidence 11233456899999999999999999999998875
|
| >3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-34 Score=341.41 Aligned_cols=246 Identities=17% Similarity=0.175 Sum_probs=187.3
Q ss_pred ccEEEEcCCCChhHHHHHHHHHHHHCCCCeEEEcCCcccccceeEEeCCeecChhhhhhHHHHHHHHHHhhhhccCCcch
Q psy15432 108 LNVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTKYFWTVYNALHAKRKHAEDMPA 187 (1255)
Q Consensus 108 l~vIhVtGTnGKgST~a~l~sIL~~~G~k~Gl~tSPhL~~~rERI~InG~~is~~~ft~~~~~v~~~l~~~~~~~~~~p~ 187 (1255)
.++|+||||||||||+.|+++||+++|+++.+.++- |.|+...
T Consensus 112 ~~~IaVTGTnGKTTTt~ml~~iL~~~g~~~~~~Gni------------g~~~~~~------------------------- 154 (451)
T 3lk7_A 112 SQLIGITGSNGKTTTTTMIAEVLNAGGQRGLLAGNI------------GFPASEV------------------------- 154 (451)
T ss_dssp SEEEEEECSSCHHHHHHHHHHHHHHTTCCEEEEETS------------SSCHHHH-------------------------
T ss_pred CCEEEEECCCCHHHHHHHHHHHHHhcCCCEEEeeec------------Chhhhhh-------------------------
Confidence 389999999999999999999999999988554331 2222200
Q ss_pred HHHHHHHHhhhhhhccCCCEEEEeeccCCccccccccCCccEEEEcCCCcchhhhcCCCHHHHHHHHHcccCCCc---ee
Q psy15432 188 YFKFLTVMSFYVFVKEKPDAVIMEVGIGGRYDNTNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIMKPNC---IA 264 (1255)
Q Consensus 188 ~Fe~Lt~~A~~~F~~~~vD~aVlEvG~GGr~D~tnii~~P~v~vITnIg~DHld~lG~Tle~Ia~~KagI~k~g~---~~ 264 (1255)
.....++|++|+|+|+++ +|.+|.+ +|+++|||||+.||+|+|| |+|+|+.+|++||+... .+
T Consensus 155 -----------~~~~~~~d~~VlE~~s~~-l~~~~~~-~p~iaviTNI~~DHld~~g-t~e~i~~aK~~i~~~~~~~~~~ 220 (451)
T 3lk7_A 155 -----------VQAANDKDTLVMELSSFQ-LMGVKEF-RPHIAVITNLMPTHLDYHG-SFEDYVAAKWNIQNQMSSSDFL 220 (451)
T ss_dssp -----------TTTCCTTCEEEEECCHHH-HTTCSSC-CCSEEEECCCCSCCHHHHS-SHHHHHHHHHGGGTTCCTTSEE
T ss_pred -----------hhcCCCCCEEEEECCccc-ccccccc-CCCEEEEcCCChhHhhhcC-CHHHHHHHHHHHHhcCCCCCEE
Confidence 001246899999999986 6888877 7999999999999999999 99999999999998654 47
Q ss_pred eeccCCCchHHHHHHHhhhccCceEEEcCCcc----------eeeecC----cccccCCCchhHHhhHHHHHHHHHHHHH
Q psy15432 265 VTSANQRGPCKQILLETSRALNCVLLEAPSIL----------NYRWRG----QPLDEDWKSTVQSINISLAIQLAYLWMF 330 (1255)
Q Consensus 265 v~~~~q~~e~~~vl~~~a~~~~~~l~~~~~~~----------~~~~~~----~~i~l~l~G~~q~~Na~lAia~a~~~l~ 330 (1255)
|++. +++...... .+.+++++.++... .+.+.+ ..+.++++|.||++|+++|++++..+
T Consensus 221 V~n~-dd~~~~~~~----~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~hn~~NalaAia~a~~l-- 293 (451)
T 3lk7_A 221 VLNF-NQGISKELA----KTTKATIVPFSTTEKVDGAYVQDKQLFYKGENIMSVDDIGVPGSHNVENALATIAVAKLA-- 293 (451)
T ss_dssp EEET-TSHHHHHHH----TTCSSEEEEEESSSCCSSEEEETTEEEETTEEEEEGGGSSSCSHHHHHHHHHHHHHHHHH--
T ss_pred EEEC-CcHHHHHHH----hhcCCeEEEEccCCCcCCEEEECCEEEECCcEEeeccccCCCcHHHHHHHHHHHHHHHHc--
Confidence 8877 555544332 22233333322110 111222 13678999999999999999998776
Q ss_pred hhccchhhhhHHHHhhhhhccCCCCCCCCCCCCCCccCCCCCCCCccccCCCCCCCCccccccccCCCCCCCChHHHHHH
Q psy15432 331 RMNKSAELKSVIDKFLAEMRVSSPNETPGGQGHLSSCETPGGQGHLSFSETPGGQGHLTGNQSSLLMGPHFEIDPKTYRG 410 (1255)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~e~i~~g 410 (1255)
|++ ++.|++|
T Consensus 294 ---------------------------------------------------------------------gi~-~~~i~~~ 303 (451)
T 3lk7_A 294 ---------------------------------------------------------------------GIS-NQVIRET 303 (451)
T ss_dssp ---------------------------------------------------------------------TCC-HHHHHHH
T ss_pred ---------------------------------------------------------------------CCC-HHHHHHH
Confidence 667 9999999
Q ss_pred HhcCC-CCCceEEEEe-cCcEEEEc-cCCCHHHHHHHHHHHHhhhhcccccCccCCCCCCCCCccCCCCCccEEEEEecC
Q psy15432 411 IKACV-WPGRVQVIRK-NNFKYFLD-GAHTTDSIELCAKWFLRKSEAEASSSRSVSSCPLDPTQSKSSNVIQRILVFNVT 487 (1255)
Q Consensus 411 L~~~~-~pGR~e~v~~-~~~~vilD-gAHnp~si~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilVfg~~ 487 (1255)
|++|+ ||||||++.. +++.||+| |||||+|+.++++.+. . +|+++|||.+
T Consensus 304 L~~f~~~~gR~e~v~~~~g~~vi~D~~a~np~a~~~al~~~~----~-----------------------~rii~I~g~~ 356 (451)
T 3lk7_A 304 LSNFGGVKHRLQSLGKVHGISFYNDSKSTNILATQKALSGFD----N-----------------------TKVILIAGGL 356 (451)
T ss_dssp HHHCCCCTTSSEEEEEETTEEEEECTTCCSHHHHHHHHHTSC----G-----------------------GGEEEEECCS
T ss_pred HHhCCCCCCcEEEEeeeCCcEEEEeCCCCCHHHHHHHHHhCC----C-----------------------CCEEEEECCC
Confidence 99998 9999999975 57889999 7999999999876442 1 1588999866
Q ss_pred C-CCChhhhhHHhhccCCCcEEEEc
Q psy15432 488 G-ERDPTKLLSPLLQSNQFEYILVT 511 (1255)
Q Consensus 488 ~-drD~~~ll~~L~~~~~~d~vi~t 511 (1255)
. ++|.++|++.+ + . +|.+|++
T Consensus 357 ~r~~d~~~l~~~l-~-~-~d~vi~~ 378 (451)
T 3lk7_A 357 DRGNEFDELIPDI-T-G-LKHMVVL 378 (451)
T ss_dssp CCSCCCGGGHHHH-T-T-CSEEEEC
T ss_pred CCCCCHHHHHHHH-H-h-cCEEEEE
Confidence 4 68899999888 3 3 8998886
|
| >3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58} | Back alignment and structure |
|---|
Probab=99.92 E-value=9.3e-25 Score=250.11 Aligned_cols=197 Identities=12% Similarity=0.087 Sum_probs=132.4
Q ss_pred HhhccCCcccccccchHHHHHHHHHhcCcccccccceEEEecCCCCCccHHHHHHHHHHHCCCCeEEEcCccccccccee
Q psy15432 685 ESKLRKDPVEMQAVQVDQVVQYLGHLNITLDDIKKLNVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERI 764 (1255)
Q Consensus 685 ~~~~~g~~~~~~~~~v~~~~~~L~~Lg~~~~~~~~l~vIhVTGTnGKgST~aml~sILr~~G~rtGl~tSPhL~~~~ERI 764 (1255)
+++++|. +.+.++..+.+.+. ...++|+||||||||||++|+++||+++|+++++...--.-+++...
T Consensus 85 ~a~~~gi------~v~~~~e~~~~~~~------~~~~~IaVTGTnGKTTTt~ll~~iL~~~g~~~~~~~g~~~~n~~~~~ 152 (326)
T 3eag_A 85 AILNLGL------PYISGPQWLSENVL------HHHWVLGVAGTHGKTTTASMLAWVLEYAGLAPGFLIGGVPENFGVSA 152 (326)
T ss_dssp HHHHTTC------CEEEHHHHHHHHTG------GGSEEEEEESSSCHHHHHHHHHHHHHHTTCCCEEECSSEETTSSCSE
T ss_pred HHHHcCC------cEEeHHHHHHHHHh------cCCCEEEEECCCCHHHHHHHHHHHHHHcCCCceEEecceeccCCcce
Confidence 3445565 34556654443332 23589999999999999999999999999998754211111332222
Q ss_pred eeCCeecChhhhhhHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHHhhhcCCCCEEEEecccC--Cccc----cccccCC
Q psy15432 765 KLNGEPISYDKFTKYFWTVYNALHAKRKHAEDMPAYFKFLTVMSFYVFVKEKPDAVIMEVGIG--GRYD----NTNIIPN 838 (1255)
Q Consensus 765 ~InG~pIs~~~f~~~~~~v~~~l~~~~~~~~~~pt~Fe~lT~mAf~~F~~~~vD~aVlEVG~G--Gr~D----~TNvi~~ 838 (1255)
. -|.|.+. ....+.|++|+|+|+. +..+ ...+ +
T Consensus 153 ~-~~~p~~~--------------------------------------~~~~~~~~~V~E~ss~~~~~~~~~~~~~~~--~ 191 (326)
T 3eag_A 153 R-LPQTPRQ--------------------------------------DPNSQSPFFVIEADEYDTAFFDKRSKFVHY--R 191 (326)
T ss_dssp E-CCCCCSS--------------------------------------CTTSCCCEEEEECCCSEEETTEEEEGGGGS--C
T ss_pred e-cCCcccc--------------------------------------ccCCCCCEEEEEccccccchhhcccceeEe--c
Confidence 1 1334331 1456889999999984 3322 2333 7
Q ss_pred CcEEEEcCCCchhhhhcCCCHHHHHHHHhcccc---CCceEEEccCCCChhHHHHHHHhhhcCCeEEEcCCccc------
Q psy15432 839 TAVVGITSLGYDHTAVLGNTIEEITMQKAGIMK---PNCIAVTSANQRGPCKQILLETSRALNCVLLEAPSILN------ 909 (1255)
Q Consensus 839 P~VavITnIg~DHl~~LG~TleeIA~~KagI~K---~g~~av~~~~qd~~~~~vl~~~A~~~~~~l~~~~~~~~------ 909 (1255)
|+++|||||+.||+++|| |+|+|+.+|++||+ +++.+|++. +|+...+++.+. ..++++.++...+
T Consensus 192 P~vaviTNI~~DHLd~~g-s~e~y~~aK~~i~~~~~~~~~~V~n~-Dd~~~~~~~~~~---~~~~~~~~g~~~d~~~~~~ 266 (326)
T 3eag_A 192 PRTAVLNNLEFDHADIFA-DLGAIQTQFHYLVRTVPSEGLIVCNG-RQQSLQDTLDKG---CWTPVEKFGTEHGWQAGEA 266 (326)
T ss_dssp CSEEEECCCCCCCTTTSS-SHHHHHHHHHHHHTTSCTTSEEEEES-SCHHHHHHHTTC---CCSCEEEESSSSSEEEEEE
T ss_pred CCEEEECCCcHHHHhhcC-CHHHHHHHHHHHHHhCCCCCEEEEeC-CCHHHHHHHhhc---cCCCEEEECCCCcEEEEEe
Confidence 999999999999999999 99999999999997 688999997 444444433221 1233443332111
Q ss_pred -----e--eccC---CccccCCCchhHHHHHHHHHHHHHH
Q psy15432 910 -----Y--RWRG---QPLDEDWKSTVQSINISLAIQLAYL 939 (1255)
Q Consensus 910 -----~--~~~~---~~v~l~L~G~hq~~Na~lAiala~~ 939 (1255)
+ ...+ ..+.++++|.||++|+++|++++..
T Consensus 267 ~~~g~f~~~~~~~~~~~~~l~l~G~hNv~NalaAia~a~~ 306 (326)
T 3eag_A 267 NADGSFDVLLDGKTAGRVKWDLMGRHNRMNALAVIAAARH 306 (326)
T ss_dssp CTTSCEEEEETTEEEEEECCCCCSHHHHHHHHHHHHHHHH
T ss_pred cCCcEEEEEECCceEEEEEecCCcHHHHHHHHHHHHHHHH
Confidence 1 1122 1467899999999999999998876
|
| >3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58} | Back alignment and structure |
|---|
Probab=99.91 E-value=5.2e-24 Score=243.92 Aligned_cols=175 Identities=14% Similarity=0.145 Sum_probs=120.6
Q ss_pred ccEEEEcCCCChhHHHHHHHHHHHHCCCCeEEEcCCcccccceeEEeCCeecChhhhhhHHHHHHHHHHhhhhccCCcch
Q psy15432 108 LNVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTKYFWTVYNALHAKRKHAEDMPA 187 (1255)
Q Consensus 108 l~vIhVtGTnGKgST~a~l~sIL~~~G~k~Gl~tSPhL~~~rERI~InG~~is~~~ft~~~~~v~~~l~~~~~~~~~~p~ 187 (1255)
.++|+||||||||||+.|+++||+++|+++++....-..+++...++ |.|.+.
T Consensus 108 ~~~IaVTGTnGKTTTt~ll~~iL~~~g~~~~~~~g~~~~n~~~~~~~-~~p~~~-------------------------- 160 (326)
T 3eag_A 108 HWVLGVAGTHGKTTTASMLAWVLEYAGLAPGFLIGGVPENFGVSARL-PQTPRQ-------------------------- 160 (326)
T ss_dssp SEEEEEESSSCHHHHHHHHHHHHHHTTCCCEEECSSEETTSSCSEEC-CCCCSS--------------------------
T ss_pred CCEEEEECCCCHHHHHHHHHHHHHHcCCCceEEecceeccCCcceec-CCcccc--------------------------
Confidence 47999999999999999999999999999875432111111111111 222220
Q ss_pred HHHHHHHHhhhhhhccCCCEEEEeeccC--Ccc----ccccccCCccEEEEcCCCcchhhhcCCCHHHHHHHHHcccC--
Q psy15432 188 YFKFLTVMSFYVFVKEKPDAVIMEVGIG--GRY----DNTNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIMK-- 259 (1255)
Q Consensus 188 ~Fe~Lt~~A~~~F~~~~vD~aVlEvG~G--Gr~----D~tnii~~P~v~vITnIg~DHld~lG~Tle~Ia~~KagI~k-- 259 (1255)
...++.|++|+|+|+. +.. +..++ +|+++|||||+.||+|+|| |+|+|+.+|++||+
T Consensus 161 ------------~~~~~~~~~V~E~ss~~~~~~~~~~~~~~~--~P~vaviTNI~~DHLd~~g-s~e~y~~aK~~i~~~~ 225 (326)
T 3eag_A 161 ------------DPNSQSPFFVIEADEYDTAFFDKRSKFVHY--RPRTAVLNNLEFDHADIFA-DLGAIQTQFHYLVRTV 225 (326)
T ss_dssp ------------CTTSCCCEEEEECCCSEEETTEEEEGGGGS--CCSEEEECCCCCCCTTTSS-SHHHHHHHHHHHHTTS
T ss_pred ------------ccCCCCCEEEEEccccccchhhcccceeEe--cCCEEEECCCcHHHHhhcC-CHHHHHHHHHHHHHhC
Confidence 1456889999999984 322 23344 8999999999999999999 99999999999997
Q ss_pred -CCceeeeccCCCchHHHHHHHhhhccCceEEEcCCcce-----------eee--cC---cccccCCCchhHHhhHHHHH
Q psy15432 260 -PNCIAVTSANQRGPCKQILLETSRALNCVLLEAPSILN-----------YRW--RG---QPLDEDWKSTVQSINISLAI 322 (1255)
Q Consensus 260 -~g~~~v~~~~q~~e~~~vl~~~a~~~~~~l~~~~~~~~-----------~~~--~~---~~i~l~l~G~~q~~Na~lAi 322 (1255)
++..+|++. +|+....++.+.+ .+.++.++...+ |.+ .+ ..+.++++|.||++|+++|+
T Consensus 226 ~~~~~~V~n~-Dd~~~~~~~~~~~---~~~~~~~g~~~d~~~~~~~~~g~f~~~~~~~~~~~~~l~l~G~hNv~NalaAi 301 (326)
T 3eag_A 226 PSEGLIVCNG-RQQSLQDTLDKGC---WTPVEKFGTEHGWQAGEANADGSFDVLLDGKTAGRVKWDLMGRHNRMNALAVI 301 (326)
T ss_dssp CTTSEEEEES-SCHHHHHHHTTCC---CSCEEEESSSSSEEEEEECTTSCEEEEETTEEEEEECCCCCSHHHHHHHHHHH
T ss_pred CCCCEEEEeC-CCHHHHHHHhhcc---CCCEEEECCCCcEEEEEecCCcEEEEEECCceEEEEEecCCcHHHHHHHHHHH
Confidence 677888887 5555544443221 122222221111 111 11 14679999999999999999
Q ss_pred HHHHHH
Q psy15432 323 QLAYLW 328 (1255)
Q Consensus 323 a~a~~~ 328 (1255)
+++..+
T Consensus 302 a~a~~l 307 (326)
T 3eag_A 302 AAARHV 307 (326)
T ss_dssp HHHHHH
T ss_pred HHHHHc
Confidence 998776
|
| >3mvn_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamayl-M diaminopimelate ligase; structural genomics, MCSG, PSI-2; 1.90A {Haemophilus ducreyi} | Back alignment and structure |
|---|
Probab=99.36 E-value=4.5e-12 Score=131.23 Aligned_cols=133 Identities=14% Similarity=0.097 Sum_probs=81.0
Q ss_pred hHHHHHHHhcCC-CCCceEEEEe-cCcEEEEccCCCHHHHHHHHHHHHhhhhcccccCccCCCCCCCCCccCCCCCccEE
Q psy15432 404 DPKTYRGIKACV-WPGRVQVIRK-NNFKYFLDGAHTTDSIELCAKWFLRKSEAEASSSRSVSSCPLDPTQSKSSNVIQRI 481 (1255)
Q Consensus 404 ~e~i~~gL~~~~-~pGR~e~v~~-~~~~vilDgAHnp~si~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 481 (1255)
.++|++||++|+ ++||||++.. ++++||+||||||+||+++++++++.++. +|++
T Consensus 11 ~~~i~~~L~~f~gv~~R~E~i~~~~g~~vi~DyaHnP~si~a~l~al~~~~~~-----------------------~rii 67 (163)
T 3mvn_A 11 VDLGTENLYFQSNAQRRLEVKGVVNNITVYDDFAHHPTAITATIDALRAKVGQ-----------------------QRIL 67 (163)
T ss_dssp ----------------CCEEEEEETTEEEEEECCCSHHHHHHHHHHHHHHHTT-----------------------SCEE
T ss_pred HHHHHHHHHhCCCCCCCeEEEecCCCcEEEEcCCCCHHHHHHHHHHHHHhcCC-----------------------CcEE
Confidence 468899999999 9999999975 57899999999999999999999875432 2789
Q ss_pred EEEecCCC----CCh-hhhhHHhhccCCCcEEEEcCCCCCCCCCCCCcCCCCcccccccccccccCCCCCCCCCCCCCCC
Q psy15432 482 LVFNVTGE----RDP-TKLLSPLLQSNQFEYILVTPNILTNESSPDTQYGGNRTIDRFGVKLDSRTAAPNGGHEPGRPNV 556 (1255)
Q Consensus 482 lVfg~~~d----rD~-~~ll~~L~~~~~~d~vi~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 556 (1255)
+||++.++ ++. ..+...+ ..+|.+|+|+ ++ +.+ .
T Consensus 68 vvf~~g~~s~r~k~~~~~~~~~~---~~aD~vi~~~--~~-~~~----~------------------------------- 106 (163)
T 3mvn_A 68 AVLEPRSNTMKMGVHKHELATSL---QDADSVFIYQ--PP-TIE----W------------------------------- 106 (163)
T ss_dssp EEECCC---------CHHHHHHH---TTCSEEEEEC--C---------C-------------------------------
T ss_pred EEECCCCcchhhHHHHHHHHHHH---hcCCEEEEEC--CC-Ccc----c-------------------------------
Confidence 99998654 333 3333333 3589999985 22 110 0
Q ss_pred CCCCCCcccCCCCCcccCCCCCCCcccccccccccchhhHHHHHHhhccCCCcEEEcCCHHHHHHHHhccCCCCCceEEE
Q psy15432 557 GQGGGGFQSRSGDNSIRSNANPLSSVDCHNVNDQSNSFHKIATVASALSQRSKVVEFSSVLDTYNFKYGLDPSKEYHILV 636 (1255)
Q Consensus 557 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~si~~ai~~~~~~~~~~~~~vlv 636 (1255)
. +++....+. .++..++|+++|++.+.... .+++.|||
T Consensus 107 ---------------------------------~------~~~~~~~~~--~~~~~~~d~~eai~~~~~~~-~~gDvVLv 144 (163)
T 3mvn_A 107 ---------------------------------Q------VSEVLANLA--QPAISADDVDELVMRIVQQA-KPNDHILI 144 (163)
T ss_dssp ---------------------------------C------HHHHHTTCC--SCEEEESSHHHHHHHHHHHC-CTTCEEEE
T ss_pred ---------------------------------C------HHHHHhhCC--CCeEEECCHHHHHHHHHHhC-CCCCEEEE
Confidence 0 112222222 25778999999999999886 57789999
Q ss_pred eccccc
Q psy15432 637 TGSLHL 642 (1255)
Q Consensus 637 tGSlhL 642 (1255)
+||..+
T Consensus 145 ~Gsg~~ 150 (163)
T 3mvn_A 145 MSNGAF 150 (163)
T ss_dssp ECSSCG
T ss_pred ECCCCH
Confidence 999763
|
| >3mvn_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamayl-M diaminopimelate ligase; structural genomics, MCSG, PSI-2; 1.90A {Haemophilus ducreyi} | Back alignment and structure |
|---|
Probab=99.24 E-value=2.2e-11 Score=126.10 Aligned_cols=130 Identities=12% Similarity=0.063 Sum_probs=78.1
Q ss_pred HHHHHHHhcCC-CCCcEEEEee-cCcEEEEEcCcCHHHHHHHHHHHHhhhccccCCCcccCCCCCcEEEEEecCCC----
Q psy15432 1017 PKTYRGIKACV-WPGRVQVIRK-NNFKYFLDGAHTTDSIELCAKWFLRKSEAEANPTQSKSSNVIQRILVFNVTGE---- 1090 (1255)
Q Consensus 1017 ~~i~~gL~~~~-~pGR~E~v~~-~~~~vilDgAHNP~S~~a~l~~l~~~~~~~~~~~~~~~~~~~~~vlVfg~~~d---- 1090 (1255)
++|.+||++|+ ++||||++.. +++++|+||||||+||++++++++.... .+++++||++.++
T Consensus 12 ~~i~~~L~~f~gv~~R~E~i~~~~g~~vi~DyaHnP~si~a~l~al~~~~~------------~~riivvf~~g~~s~r~ 79 (163)
T 3mvn_A 12 DLGTENLYFQSNAQRRLEVKGVVNNITVYDDFAHHPTAITATIDALRAKVG------------QQRILAVLEPRSNTMKM 79 (163)
T ss_dssp ---------------CCEEEEEETTEEEEEECCCSHHHHHHHHHHHHHHHT------------TSCEEEEECCC------
T ss_pred HHHHHHHHhCCCCCCCeEEEecCCCcEEEEcCCCCHHHHHHHHHHHHHhcC------------CCcEEEEECCCCcchhh
Confidence 57899999999 9999999975 5788999999999999999999987532 2578999998653
Q ss_pred CCh-hhhhhhhhcCCCCcEEEEcCCCCcccccccCCCCCccccc--ccccccCCHHHHHHHHHHHcCCCceEEeecCCCC
Q psy15432 1091 RDP-TKLLSPLLQSNQFEYILVTPNILTNEIRWRGQPLDEDWKS--TVQSINISLAIQLAYLWMFRMNKSAELKRNQSSL 1167 (1255)
Q Consensus 1091 rD~-~~ll~~L~~~~~~d~vi~t~~~~~~~~~~~~~~~~~~~~~--d~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 1167 (1255)
++. ..+...+ ..+|.+|+|+.. +... ...+.... ....+..+.++.++.+.....+.+++|++|++++
T Consensus 80 k~~~~~~~~~~---~~aD~vi~~~~~---~~~~---~~~~~~~~~~~~~~~~~d~~eai~~~~~~~~~gDvVLv~Gsg~~ 150 (163)
T 3mvn_A 80 GVHKHELATSL---QDADSVFIYQPP---TIEW---QVSEVLANLAQPAISADDVDELVMRIVQQAKPNDHILIMSNGAF 150 (163)
T ss_dssp ---CHHHHHHH---TTCSEEEEECC-------C---CHHHHHTTCCSCEEEESSHHHHHHHHHHHCCTTCEEEEECSSCG
T ss_pred HHHHHHHHHHH---hcCCEEEEECCC---Cccc---CHHHHHhhCCCCeEEECCHHHHHHHHHHhCCCCCEEEEECCCCH
Confidence 333 2222333 258999988632 1100 00011110 1233456899999999999999999999999983
|
| >4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A* | Back alignment and structure |
|---|
Probab=90.55 E-value=0.18 Score=52.11 Aligned_cols=34 Identities=21% Similarity=0.376 Sum_probs=29.3
Q ss_pred ceEEEecCCC---CCccHHHHHHHHHHHCCCCeEEEc
Q psy15432 720 LNVIHISGTK---GKGSTCAYCESILRSHGFSTGFFS 753 (1255)
Q Consensus 720 l~vIhVTGTn---GKgST~aml~sILr~~G~rtGl~t 753 (1255)
+++|.|+++| ||||++..++..|...|+||.++-
T Consensus 1 M~vi~v~s~kgG~GKTt~a~~la~~la~~g~~vlliD 37 (206)
T 4dzz_A 1 MKVISFLNPKGGSGKTTAVINIATALSRSGYNIAVVD 37 (206)
T ss_dssp CEEEEECCSSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CeEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEE
Confidence 3688888654 699999999999999999998874
|
| >3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} | Back alignment and structure |
|---|
Probab=88.33 E-value=0.29 Score=55.58 Aligned_cols=36 Identities=19% Similarity=0.178 Sum_probs=30.6
Q ss_pred cccceEEEecC--CCCCccHHHHHHHHHHHCCCCeEEE
Q psy15432 717 IKKLNVIHISG--TKGKGSTCAYCESILRSHGFSTGFF 752 (1255)
Q Consensus 717 ~~~l~vIhVTG--TnGKgST~aml~sILr~~G~rtGl~ 752 (1255)
+..-+||+|+| =-|||||+.-|+..|.+.|+||++.
T Consensus 45 i~~aKVIAIaGKGGVGKTTtavNLA~aLA~~GkkVllI 82 (314)
T 3fwy_A 45 ITGAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQI 82 (314)
T ss_dssp --CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCCceEEEEECCCccCHHHHHHHHHHHHHHCCCeEEEE
Confidence 35668999997 3369999999999999999999987
|
| >3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} | Back alignment and structure |
|---|
Probab=88.27 E-value=0.38 Score=54.56 Aligned_cols=36 Identities=17% Similarity=0.145 Sum_probs=30.8
Q ss_pred CCccEEEEcC--CCChhHHHHHHHHHHHHCCCCeEEEc
Q psy15432 106 KKLNVIHISG--TKGKGSTCAYCESILRSHGFSTGFFS 141 (1255)
Q Consensus 106 ~~l~vIhVtG--TnGKgST~a~l~sIL~~~G~k~Gl~t 141 (1255)
.+-++|+|+| =-|||||+.-|+..|.+.|+||+++-
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~aLA~~GkkVllID 83 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQIG 83 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCceEEEEECCCccCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 3558999996 34799999999999999999999974
|
| >2obn_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; HET: PG4; 2.30A {Anabaena variabilis} | Back alignment and structure |
|---|
Probab=86.44 E-value=0.86 Score=52.50 Aligned_cols=37 Identities=22% Similarity=0.268 Sum_probs=33.0
Q ss_pred ccEEEEcCCC---ChhHHHHHHHHHHHHCCCCeEEEcCCc
Q psy15432 108 LNVIHISGTK---GKGSTCAYCESILRSHGFSTGFFSSPH 144 (1255)
Q Consensus 108 l~vIhVtGTn---GKgST~a~l~sIL~~~G~k~Gl~tSPh 144 (1255)
-+.|.|+||- ||++|+..+...|++.|++++++.|..
T Consensus 152 ~k~i~v~GTD~~VGK~~ts~~L~~~l~~~G~~a~~~~tgq 191 (349)
T 2obn_A 152 CRRVLTVGTDMAIGKMSTSLELHWAAKLRGWRSKFLATGQ 191 (349)
T ss_dssp SEEEEEEESSSSSSHHHHHHHHHHHHHHTTCCEEEECCSH
T ss_pred ceEEEEcCCCccccceeHHHHHHHHHHhcCCcEEEEeccc
Confidence 4679999985 999999999999999999999987653
|
| >1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=85.76 E-value=0.81 Score=49.39 Aligned_cols=33 Identities=21% Similarity=0.263 Sum_probs=28.1
Q ss_pred eEEEecCCC---CCccHHHHHHHHHHHCCCCeEEEc
Q psy15432 721 NVIHISGTK---GKGSTCAYCESILRSHGFSTGFFS 753 (1255)
Q Consensus 721 ~vIhVTGTn---GKgST~aml~sILr~~G~rtGl~t 753 (1255)
++|.|++++ ||||++..++..|...|+||.++-
T Consensus 3 ~~I~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD 38 (263)
T 1hyq_A 3 RTITVASGKGGTGKTTITANLGVALAQLGHDVTIVD 38 (263)
T ss_dssp EEEEEEESSSCSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred eEEEEECCCCCCCHHHHHHHHHHHHHhCCCcEEEEE
Confidence 567776655 799999999999999999998873
|
| >2obn_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; HET: PG4; 2.30A {Anabaena variabilis} | Back alignment and structure |
|---|
Probab=84.17 E-value=0.98 Score=52.02 Aligned_cols=37 Identities=22% Similarity=0.229 Sum_probs=33.1
Q ss_pred cceEEEecCC---CCCccHHHHHHHHHHHCCCCeEEEcCc
Q psy15432 719 KLNVIHISGT---KGKGSTCAYCESILRSHGFSTGFFSSP 755 (1255)
Q Consensus 719 ~l~vIhVTGT---nGKgST~aml~sILr~~G~rtGl~tSP 755 (1255)
+.+.|.|+|| -||++|+..+...|++.|++++++.|.
T Consensus 151 ~~k~i~v~GTD~~VGK~~ts~~L~~~l~~~G~~a~~~~tg 190 (349)
T 2obn_A 151 PCRRVLTVGTDMAIGKMSTSLELHWAAKLRGWRSKFLATG 190 (349)
T ss_dssp SSEEEEEEESSSSSSHHHHHHHHHHHHHHTTCCEEEECCS
T ss_pred cceEEEEcCCCccccceeHHHHHHHHHHhcCCcEEEEecc
Confidence 3578999998 499999999999999999999998765
|
| >1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A | Back alignment and structure |
|---|
Probab=83.86 E-value=0.82 Score=48.02 Aligned_cols=32 Identities=19% Similarity=0.316 Sum_probs=28.9
Q ss_pred cEEEEcCCC---ChhHHHHHHHHHHHHCCCCeEEE
Q psy15432 109 NVIHISGTK---GKGSTCAYCESILRSHGFSTGFF 140 (1255)
Q Consensus 109 ~vIhVtGTn---GKgST~a~l~sIL~~~G~k~Gl~ 140 (1255)
++|.|++++ |||||+.-++..|.+.|+||+++
T Consensus 2 k~I~v~s~kgGvGKTt~a~nLa~~la~~G~rVll~ 36 (224)
T 1byi_A 2 KRYFVTGTDTEVGKTVASCALLQAAKAAGYRTAGY 36 (224)
T ss_dssp EEEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEE
Confidence 478888875 89999999999999999999986
|
| >1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A | Back alignment and structure |
|---|
Probab=82.85 E-value=0.73 Score=48.44 Aligned_cols=32 Identities=19% Similarity=0.316 Sum_probs=28.7
Q ss_pred eEEEecCCC---CCccHHHHHHHHHHHCCCCeEEE
Q psy15432 721 NVIHISGTK---GKGSTCAYCESILRSHGFSTGFF 752 (1255)
Q Consensus 721 ~vIhVTGTn---GKgST~aml~sILr~~G~rtGl~ 752 (1255)
++|.|++++ |||||+.-++..|.+.|+||+++
T Consensus 2 k~I~v~s~kgGvGKTt~a~nLa~~la~~G~rVll~ 36 (224)
T 1byi_A 2 KRYFVTGTDTEVGKTVASCALLQAAKAAGYRTAGY 36 (224)
T ss_dssp EEEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEE
Confidence 578888775 89999999999999999999986
|
| >3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=80.17 E-value=16 Score=43.28 Aligned_cols=36 Identities=22% Similarity=0.429 Sum_probs=30.9
Q ss_pred ccEEEEcCCC--ChhHHHHHHHHHHHHCCCCeEEEcCC
Q psy15432 108 LNVIHISGTK--GKGSTCAYCESILRSHGFSTGFFSSP 143 (1255)
Q Consensus 108 l~vIhVtGTn--GKgST~a~l~sIL~~~G~k~Gl~tSP 143 (1255)
-.+|.++|.+ |||||++-|+..|+..|+++.++...
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D 137 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSD 137 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECC
T ss_pred CeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 4688888765 79999999999999999999998754
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 1255 | ||||
| d1o5za2 | 296 | c.72.2.2 (A:-2-293) Folylpolyglutamate synthetase | 4e-20 | |
| d1o5za2 | 296 | c.72.2.2 (A:-2-293) Folylpolyglutamate synthetase | 4e-20 | |
| d2gc6a2 | 296 | c.72.2.2 (A:1-296) Folylpolyglutamate synthetase { | 7e-18 | |
| d2gc6a2 | 296 | c.72.2.2 (A:1-296) Folylpolyglutamate synthetase { | 7e-18 | |
| d1e8ca3 | 234 | c.72.2.1 (A:104-337) UDP-N-acetylmuramyl tripeptid | 5e-06 | |
| d1e8ca3 | 234 | c.72.2.1 (A:104-337) UDP-N-acetylmuramyl tripeptid | 5e-06 | |
| d2gc6a1 | 129 | c.59.1.2 (A:297-425) Folylpolyglutamate synthetase | 2e-04 | |
| d2gc6a1 | 129 | c.59.1.2 (A:297-425) Folylpolyglutamate synthetase | 2e-04 | |
| d2gc6a1 | 129 | c.59.1.2 (A:297-425) Folylpolyglutamate synthetase | 2e-04 | |
| d1o5za1 | 137 | c.59.1.2 (A:294-430) Folylpolyglutamate synthetase | 4e-04 | |
| d1o5za1 | 137 | c.59.1.2 (A:294-430) Folylpolyglutamate synthetase | 4e-04 | |
| d1o5za1 | 137 | c.59.1.2 (A:294-430) Folylpolyglutamate synthetase | 4e-04 | |
| d1e8ca2 | 160 | c.59.1.1 (A:338-497) UDP-N-acetylmuramyl tripeptid | 0.002 | |
| d1e8ca2 | 160 | c.59.1.1 (A:338-497) UDP-N-acetylmuramyl tripeptid | 0.002 | |
| d1e8ca2 | 160 | c.59.1.1 (A:338-497) UDP-N-acetylmuramyl tripeptid | 0.002 |
| >d1o5za2 c.72.2.2 (A:-2-293) Folylpolyglutamate synthetase {Thermotoga maritima [TaxId: 2336]} Length = 296 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribokinase-like superfamily: MurD-like peptide ligases, catalytic domain family: Folylpolyglutamate synthetase domain: Folylpolyglutamate synthetase species: Thermotoga maritima [TaxId: 2336]
Score = 90.1 bits (222), Expect = 4e-20
Identities = 69/272 (25%), Positives = 123/272 (45%), Gaps = 22/272 (8%)
Query: 53 SYVDAIKQLNTLQSNIRTIRESKLRKDPVEMQAVQVDQVVQYLGHLNITLDDIKKLNVIH 112
+Y++ ++ L K V+ ++ ++ LG+ + + IH
Sbjct: 5 AYLEVLRYL-----------YHKRPMGKVKPGLERISMLLSKLGNPH------LEYKTIH 47
Query: 113 ISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTKYFWTVY 172
I GT GKGS +IL S G+ G + SPHL RERI+LN E IS + K + T+
Sbjct: 48 IGGTNGKGSVANMVSNILVSQGYRVGSYYSPHLSTFRERIRLNEEYISEEDVVKIYETME 107
Query: 173 NALHAKRKHAEDMPAYFKFLTVMSFYVFVKEKPDAVIMEVGIGGRYDNTNIIPNTAVVGI 232
L+ K P++F+ +T M+F F ++ D ++EVG+GGR + + I
Sbjct: 108 PILNELDKEEIFSPSFFEVVTAMAFLYFAEKNVDIAVLEVGLGGRL-DATNVVFPLCSTI 166
Query: 233 TSLGYDHTAVLGNTIEEITMQKAGIMKPNCIAVTSANQ----RGPCKQILLETSRALNCV 288
++ DH LG TIE+I +K+GI+K VT + + ++SR
Sbjct: 167 VTVDRDHEKTLGYTIEQIAWEKSGIIKERVPLVTGERKREALKVMEDVARKKSSRMYVID 226
Query: 289 LLEAPSILNYRWRGQPLDEDWKSTVQSINISL 320
+ + + + D ++T + + +++
Sbjct: 227 KDFSVKVKSLKLHENRFDYCGENTFEDLVLTM 258
|
| >d1o5za2 c.72.2.2 (A:-2-293) Folylpolyglutamate synthetase {Thermotoga maritima [TaxId: 2336]} Length = 296 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribokinase-like superfamily: MurD-like peptide ligases, catalytic domain family: Folylpolyglutamate synthetase domain: Folylpolyglutamate synthetase species: Thermotoga maritima [TaxId: 2336]
Score = 90.1 bits (222), Expect = 4e-20
Identities = 69/272 (25%), Positives = 123/272 (45%), Gaps = 22/272 (8%)
Query: 665 SYVDAIKQLNTLQSNIRTIRESKLRKDPVEMQAVQVDQVVQYLGHLNITLDDIKKLNVIH 724
+Y++ ++ L K V+ ++ ++ LG+ + + IH
Sbjct: 5 AYLEVLRYL-----------YHKRPMGKVKPGLERISMLLSKLGNPH------LEYKTIH 47
Query: 725 ISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTKYFWTVY 784
I GT GKGS +IL S G+ G + SPHL RERI+LN E IS + K + T+
Sbjct: 48 IGGTNGKGSVANMVSNILVSQGYRVGSYYSPHLSTFRERIRLNEEYISEEDVVKIYETME 107
Query: 785 NALHAKRKHAEDMPAYFKFLTVMSFYVFVKEKPDAVIMEVGIGGRYDNTNIIPNTAVVGI 844
L+ K P++F+ +T M+F F ++ D ++EVG+GGR + + I
Sbjct: 108 PILNELDKEEIFSPSFFEVVTAMAFLYFAEKNVDIAVLEVGLGGRL-DATNVVFPLCSTI 166
Query: 845 TSLGYDHTAVLGNTIEEITMQKAGIMKPNCIAVTSANQ----RGPCKQILLETSRALNCV 900
++ DH LG TIE+I +K+GI+K VT + + ++SR
Sbjct: 167 VTVDRDHEKTLGYTIEQIAWEKSGIIKERVPLVTGERKREALKVMEDVARKKSSRMYVID 226
Query: 901 LLEAPSILNYRWRGQPLDEDWKSTVQSINISL 932
+ + + + D ++T + + +++
Sbjct: 227 KDFSVKVKSLKLHENRFDYCGENTFEDLVLTM 258
|
| >d2gc6a2 c.72.2.2 (A:1-296) Folylpolyglutamate synthetase {Lactobacillus casei [TaxId: 1582]} Length = 296 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribokinase-like superfamily: MurD-like peptide ligases, catalytic domain family: Folylpolyglutamate synthetase domain: Folylpolyglutamate synthetase species: Lactobacillus casei [TaxId: 1582]
Score = 83.6 bits (205), Expect = 7e-18
Identities = 62/254 (24%), Positives = 108/254 (42%), Gaps = 20/254 (7%)
Query: 106 KKLNVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFT 165
++ IH++GT GKGS +L + G + G +++P ++ ERI ++ EPI
Sbjct: 37 QQGRYIHVTGTNGKGSAANAIAHVLEASGLTVGLYTAPFIMRFNERIMIDHEPIPDAALV 96
Query: 166 KYFWTVYNALHAKRKHAEDMPA-YFKFLTVMSFYVFVKEKPDAVIMEVGIGGRYDNTNII 224
V AL ++ D F+F+T + ++ F + + D ++EVGIGG D+TN+I
Sbjct: 97 NAVAFVRAALERLQQQQADFNVTEFEFITALGYWYFRQRQVDVAVIEVGIGGDTDSTNVI 156
Query: 225 PNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIMKPNCIAVTSANQRGPCKQILLETSRA 284
V +T + DH +LG+TI I KAGI+K V + N ++
Sbjct: 157 TPV-VSVLTEVALDHQKLLGHTITAIAKHKAGIIKRGIP-VVTGNLVPDAAAVVAAKVAT 214
Query: 285 LNC----------VLLEAPSILNYRWRGQPLDEDWKS-------TVQSINISLAIQLAYL 327
V R+ + D Q N+++AIQ A +
Sbjct: 215 TGSQWLRFDRDFSVPKAKLHGWGQRFTYEDQDGRISDLEVPLVGDYQQRNMAIAIQTAKV 274
Query: 328 WMFRMNKSAELKSV 341
+ + +++
Sbjct: 275 YAKQTEWPLTPQNI 288
|
| >d2gc6a2 c.72.2.2 (A:1-296) Folylpolyglutamate synthetase {Lactobacillus casei [TaxId: 1582]} Length = 296 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribokinase-like superfamily: MurD-like peptide ligases, catalytic domain family: Folylpolyglutamate synthetase domain: Folylpolyglutamate synthetase species: Lactobacillus casei [TaxId: 1582]
Score = 83.6 bits (205), Expect = 7e-18
Identities = 62/254 (24%), Positives = 108/254 (42%), Gaps = 20/254 (7%)
Query: 718 KKLNVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFT 777
++ IH++GT GKGS +L + G + G +++P ++ ERI ++ EPI
Sbjct: 37 QQGRYIHVTGTNGKGSAANAIAHVLEASGLTVGLYTAPFIMRFNERIMIDHEPIPDAALV 96
Query: 778 KYFWTVYNALHAKRKHAEDMPA-YFKFLTVMSFYVFVKEKPDAVIMEVGIGGRYDNTNII 836
V AL ++ D F+F+T + ++ F + + D ++EVGIGG D+TN+I
Sbjct: 97 NAVAFVRAALERLQQQQADFNVTEFEFITALGYWYFRQRQVDVAVIEVGIGGDTDSTNVI 156
Query: 837 PNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIMKPNCIAVTSANQRGPCKQILLETSRA 896
V +T + DH +LG+TI I KAGI+K V + N ++
Sbjct: 157 TPV-VSVLTEVALDHQKLLGHTITAIAKHKAGIIKRGIP-VVTGNLVPDAAAVVAAKVAT 214
Query: 897 LNC----------VLLEAPSILNYRWRGQPLDEDWKS-------TVQSINISLAIQLAYL 939
V R+ + D Q N+++AIQ A +
Sbjct: 215 TGSQWLRFDRDFSVPKAKLHGWGQRFTYEDQDGRISDLEVPLVGDYQQRNMAIAIQTAKV 274
Query: 940 WMFRMNKSAELKSV 953
+ + +++
Sbjct: 275 YAKQTEWPLTPQNI 288
|
| >d1e8ca3 c.72.2.1 (A:104-337) UDP-N-acetylmuramyl tripeptide synthetase MurE {Escherichia coli [TaxId: 562]} Length = 234 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribokinase-like superfamily: MurD-like peptide ligases, catalytic domain family: MurCDEF domain: UDP-N-acetylmuramyl tripeptide synthetase MurE species: Escherichia coli [TaxId: 562]
Score = 47.1 bits (110), Expect = 5e-06
Identities = 16/105 (15%), Positives = 30/105 (28%), Gaps = 7/105 (6%)
Query: 106 KKLNVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFT 165
L ++ ++GT GK +T + G + + L G+ I + T
Sbjct: 3 DNLRLVGVTGTNGKTTTTQLLAQWSQLLGEISAVMGTVG-------NGLLGKVIPTENTT 55
Query: 166 KYFWTVYNALHAKRKHAEDMPAYFKFLTVMSFYVFVKEKPDAVIM 210
V + L A + + K A +
Sbjct: 56 GSAVDVQHELAGLVDQGATFCAMEVSSHGLVQHRVAALKFAASVF 100
|
| >d1e8ca3 c.72.2.1 (A:104-337) UDP-N-acetylmuramyl tripeptide synthetase MurE {Escherichia coli [TaxId: 562]} Length = 234 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribokinase-like superfamily: MurD-like peptide ligases, catalytic domain family: MurCDEF domain: UDP-N-acetylmuramyl tripeptide synthetase MurE species: Escherichia coli [TaxId: 562]
Score = 47.1 bits (110), Expect = 5e-06
Identities = 16/105 (15%), Positives = 30/105 (28%), Gaps = 7/105 (6%)
Query: 718 KKLNVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFT 777
L ++ ++GT GK +T + G + + L G+ I + T
Sbjct: 3 DNLRLVGVTGTNGKTTTTQLLAQWSQLLGEISAVMGTVG-------NGLLGKVIPTENTT 55
Query: 778 KYFWTVYNALHAKRKHAEDMPAYFKFLTVMSFYVFVKEKPDAVIM 822
V + L A + + K A +
Sbjct: 56 GSAVDVQHELAGLVDQGATFCAMEVSSHGLVQHRVAALKFAASVF 100
|
| >d2gc6a1 c.59.1.2 (A:297-425) Folylpolyglutamate synthetase, C-terminal domain {Lactobacillus casei [TaxId: 1582]} Length = 129 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurD-like peptide ligases, peptide-binding domain superfamily: MurD-like peptide ligases, peptide-binding domain family: Folylpolyglutamate synthetase, C-terminal domain domain: Folylpolyglutamate synthetase, C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Score = 40.3 bits (93), Expect = 2e-04
Identities = 10/33 (30%), Positives = 13/33 (39%), Gaps = 1/33 (3%)
Query: 416 WPGRVQVIRKNNFKYFLDGAHTTDSIELCAKWF 448
WP R++ I +DGAH D I
Sbjct: 1 WPARLEKISDTP-LIVIDGAHNPDGINGLITAL 32
|
| >d2gc6a1 c.59.1.2 (A:297-425) Folylpolyglutamate synthetase, C-terminal domain {Lactobacillus casei [TaxId: 1582]} Length = 129 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurD-like peptide ligases, peptide-binding domain superfamily: MurD-like peptide ligases, peptide-binding domain family: Folylpolyglutamate synthetase, C-terminal domain domain: Folylpolyglutamate synthetase, C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Score = 40.3 bits (93), Expect = 2e-04
Identities = 10/33 (30%), Positives = 13/33 (39%), Gaps = 1/33 (3%)
Query: 1028 WPGRVQVIRKNNFKYFLDGAHTTDSIELCAKWF 1060
WP R++ I +DGAH D I
Sbjct: 1 WPARLEKISDTP-LIVIDGAHNPDGINGLITAL 32
|
| >d2gc6a1 c.59.1.2 (A:297-425) Folylpolyglutamate synthetase, C-terminal domain {Lactobacillus casei [TaxId: 1582]} Length = 129 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurD-like peptide ligases, peptide-binding domain superfamily: MurD-like peptide ligases, peptide-binding domain family: Folylpolyglutamate synthetase, C-terminal domain domain: Folylpolyglutamate synthetase, C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Score = 40.3 bits (93), Expect = 2e-04
Identities = 10/33 (30%), Positives = 13/33 (39%), Gaps = 1/33 (3%)
Query: 1188 WPGRVQVIRKNNFKYFLDGAHTTDSIELCAKWF 1220
WP R++ I +DGAH D I
Sbjct: 1 WPARLEKISDTP-LIVIDGAHNPDGINGLITAL 32
|
| >d1o5za1 c.59.1.2 (A:294-430) Folylpolyglutamate synthetase, C-terminal domain {Thermotoga maritima [TaxId: 2336]} Length = 137 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurD-like peptide ligases, peptide-binding domain superfamily: MurD-like peptide ligases, peptide-binding domain family: Folylpolyglutamate synthetase, C-terminal domain domain: Folylpolyglutamate synthetase, C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Score = 39.8 bits (92), Expect = 4e-04
Identities = 11/31 (35%), Positives = 15/31 (48%)
Query: 418 GRVQVIRKNNFKYFLDGAHTTDSIELCAKWF 448
GR +++ KN Y LDGAH E +
Sbjct: 1 GRFEILEKNGKMYILDGAHNPHGAESLVRSL 31
|
| >d1o5za1 c.59.1.2 (A:294-430) Folylpolyglutamate synthetase, C-terminal domain {Thermotoga maritima [TaxId: 2336]} Length = 137 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurD-like peptide ligases, peptide-binding domain superfamily: MurD-like peptide ligases, peptide-binding domain family: Folylpolyglutamate synthetase, C-terminal domain domain: Folylpolyglutamate synthetase, C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Score = 39.8 bits (92), Expect = 4e-04
Identities = 11/31 (35%), Positives = 15/31 (48%)
Query: 1030 GRVQVIRKNNFKYFLDGAHTTDSIELCAKWF 1060
GR +++ KN Y LDGAH E +
Sbjct: 1 GRFEILEKNGKMYILDGAHNPHGAESLVRSL 31
|
| >d1o5za1 c.59.1.2 (A:294-430) Folylpolyglutamate synthetase, C-terminal domain {Thermotoga maritima [TaxId: 2336]} Length = 137 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurD-like peptide ligases, peptide-binding domain superfamily: MurD-like peptide ligases, peptide-binding domain family: Folylpolyglutamate synthetase, C-terminal domain domain: Folylpolyglutamate synthetase, C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Score = 39.8 bits (92), Expect = 4e-04
Identities = 11/31 (35%), Positives = 15/31 (48%)
Query: 1190 GRVQVIRKNNFKYFLDGAHTTDSIELCAKWF 1220
GR +++ KN Y LDGAH E +
Sbjct: 1 GRFEILEKNGKMYILDGAHNPHGAESLVRSL 31
|
| >d1e8ca2 c.59.1.1 (A:338-497) UDP-N-acetylmuramyl tripeptide synthetase MurE {Escherichia coli [TaxId: 562]} Length = 160 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurD-like peptide ligases, peptide-binding domain superfamily: MurD-like peptide ligases, peptide-binding domain family: MurCDEF C-terminal domain domain: UDP-N-acetylmuramyl tripeptide synthetase MurE species: Escherichia coli [TaxId: 562]
Score = 38.0 bits (87), Expect = 0.002
Identities = 9/33 (27%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Query: 417 PGRVQVIR-KNNFKYFLDGAHTTDSIELCAKWF 448
GR++V +D AHT D++E +
Sbjct: 2 CGRMEVFTAPGKPTVVVDYAHTPDALEKALQAA 34
|
| >d1e8ca2 c.59.1.1 (A:338-497) UDP-N-acetylmuramyl tripeptide synthetase MurE {Escherichia coli [TaxId: 562]} Length = 160 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurD-like peptide ligases, peptide-binding domain superfamily: MurD-like peptide ligases, peptide-binding domain family: MurCDEF C-terminal domain domain: UDP-N-acetylmuramyl tripeptide synthetase MurE species: Escherichia coli [TaxId: 562]
Score = 38.0 bits (87), Expect = 0.002
Identities = 9/33 (27%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Query: 1029 PGRVQVIR-KNNFKYFLDGAHTTDSIELCAKWF 1060
GR++V +D AHT D++E +
Sbjct: 2 CGRMEVFTAPGKPTVVVDYAHTPDALEKALQAA 34
|
| >d1e8ca2 c.59.1.1 (A:338-497) UDP-N-acetylmuramyl tripeptide synthetase MurE {Escherichia coli [TaxId: 562]} Length = 160 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurD-like peptide ligases, peptide-binding domain superfamily: MurD-like peptide ligases, peptide-binding domain family: MurCDEF C-terminal domain domain: UDP-N-acetylmuramyl tripeptide synthetase MurE species: Escherichia coli [TaxId: 562]
Score = 38.0 bits (87), Expect = 0.002
Identities = 9/33 (27%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Query: 1189 PGRVQVIR-KNNFKYFLDGAHTTDSIELCAKWF 1220
GR++V +D AHT D++E +
Sbjct: 2 CGRMEVFTAPGKPTVVVDYAHTPDALEKALQAA 34
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1255 | |||
| d2gc6a2 | 296 | Folylpolyglutamate synthetase {Lactobacillus casei | 100.0 | |
| d2gc6a2 | 296 | Folylpolyglutamate synthetase {Lactobacillus casei | 100.0 | |
| d1o5za2 | 296 | Folylpolyglutamate synthetase {Thermotoga maritima | 100.0 | |
| d1o5za2 | 296 | Folylpolyglutamate synthetase {Thermotoga maritima | 100.0 | |
| d1e8ca3 | 234 | UDP-N-acetylmuramyl tripeptide synthetase MurE {Es | 99.93 | |
| d1e8ca3 | 234 | UDP-N-acetylmuramyl tripeptide synthetase MurE {Es | 99.93 | |
| d2jfga3 | 204 | UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase | 99.91 | |
| d2jfga3 | 204 | UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase | 99.9 | |
| d1p3da3 | 215 | UDP-N-acetylmuramate-alanine ligase MurC {Haemophi | 99.9 | |
| d1p3da3 | 215 | UDP-N-acetylmuramate-alanine ligase MurC {Haemophi | 99.89 | |
| d1j6ua3 | 207 | UDP-N-acetylmuramate-alanine ligase MurC {Thermoto | 99.89 | |
| d1gg4a4 | 214 | UDP-murNac-tripeptide D-alanyl-D-alanine-adding en | 99.89 | |
| d1gg4a4 | 214 | UDP-murNac-tripeptide D-alanyl-D-alanine-adding en | 99.89 | |
| d1j6ua3 | 207 | UDP-N-acetylmuramate-alanine ligase MurC {Thermoto | 99.89 | |
| d2gc6a1 | 129 | Folylpolyglutamate synthetase, C-terminal domain { | 99.69 | |
| d1o5za1 | 137 | Folylpolyglutamate synthetase, C-terminal domain { | 99.65 | |
| d1e8ca2 | 160 | UDP-N-acetylmuramyl tripeptide synthetase MurE {Es | 99.61 | |
| d2gc6a1 | 129 | Folylpolyglutamate synthetase, C-terminal domain { | 99.34 | |
| d1e8ca2 | 160 | UDP-N-acetylmuramyl tripeptide synthetase MurE {Es | 99.28 | |
| d1gg4a1 | 135 | UDP-murNac-tripeptide D-alanyl-D-alanine-adding en | 99.16 | |
| d1o5za1 | 137 | Folylpolyglutamate synthetase, C-terminal domain { | 99.09 | |
| d1j6ua2 | 151 | UDP-N-acetylmuramate-alanine ligase MurC {Thermoto | 98.93 | |
| d1j6ua2 | 151 | UDP-N-acetylmuramate-alanine ligase MurC {Thermoto | 98.57 | |
| d1p3da2 | 152 | UDP-N-acetylmuramate-alanine ligase MurC {Haemophi | 98.5 | |
| d1p3da2 | 152 | UDP-N-acetylmuramate-alanine ligase MurC {Haemophi | 98.0 | |
| d2jfga2 | 140 | UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase | 97.74 | |
| d1gg4a1 | 135 | UDP-murNac-tripeptide D-alanyl-D-alanine-adding en | 97.31 | |
| d2jfga2 | 140 | UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase | 94.23 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 93.23 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 92.91 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 91.87 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 91.74 | |
| d1byia_ | 224 | Dethiobiotin synthetase {Escherichia coli [TaxId: | 91.21 | |
| d1byia_ | 224 | Dethiobiotin synthetase {Escherichia coli [TaxId: | 90.36 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 80.36 |
| >d2gc6a2 c.72.2.2 (A:1-296) Folylpolyglutamate synthetase {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribokinase-like superfamily: MurD-like peptide ligases, catalytic domain family: Folylpolyglutamate synthetase domain: Folylpolyglutamate synthetase species: Lactobacillus casei [TaxId: 1582]
Probab=100.00 E-value=9.9e-49 Score=440.12 Aligned_cols=258 Identities=25% Similarity=0.419 Sum_probs=230.0
Q ss_pred CcHHHHHHHHHhcchhHHHHHhhhcCCCcccccccchHHHHHHHHHhcCCccCCCCccEEEEcCCCChhHHHHHHHHHHH
Q psy15432 52 QSYVDAIKQLNTLQSNIRTIRESKLRKDPVEMQAVQVDQVVQYLGHLNITLDDIKKLNVIHISGTKGKGSTCAYCESILR 131 (1255)
Q Consensus 52 ~~y~eai~~L~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~Lg~~~~~~~~l~vIhVtGTnGKgST~a~l~sIL~ 131 (1255)
|+|+|+++||+++.+. +. .+++++|+++|++||+|+ .++++|||||||||||||+|+++||+
T Consensus 1 m~~~e~~~~l~~~~~~----------~~-----~~~l~r~~~~l~~lg~P~---~~lkvI~VTGTNGKtST~~~i~~IL~ 62 (296)
T d2gc6a2 1 MNYTETVAYIHSFPRL----------AK-----TGDHRRILTLLHALGNPQ---QQGRYIHVTGTNGKGSAANAIAHVLE 62 (296)
T ss_dssp CCHHHHHHHHHTCCCC----------C--------CCHHHHHHHHHTTCGG---GSSCEEEEECSSSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHhcCcC----------CC-----CCCHHHHHHHHHHcCCch---hhCCEEEEeccCcHHHHHHHHHHHHH
Confidence 7999999999987643 21 279999999999999998 67899999999999999999999999
Q ss_pred HCCCCeEEEcCCcccccceeEEeCCeecChhhhhhHHHHHHHHHHhhhhc-cCCcchHHHHHHHHhhhhhhccCCCEEEE
Q psy15432 132 SHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTKYFWTVYNALHAKRKH-AEDMPAYFKFLTVMSFYVFVKEKPDAVIM 210 (1255)
Q Consensus 132 ~~G~k~Gl~tSPhL~~~rERI~InG~~is~~~ft~~~~~v~~~l~~~~~~-~~~~p~~Fe~Lt~~A~~~F~~~~vD~aVl 210 (1255)
++|++||+|||||+.+++||+++||.+|+++.|...+.+++..+...... ....+++|++++++++.+|.+..+|++|+
T Consensus 63 ~~G~kvG~~tSP~~~~~~e~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~d~~i~ 142 (296)
T d2gc6a2 63 ASGLTVGLYTAPFIMRFNERIMIDHEPIPDAALVNAVAFVRAALERLQQQQADFNVTEFEFITALGYWYFRQRQVDVAVI 142 (296)
T ss_dssp HTTCCEEEECSSCSSCGGGGEEETTEECCHHHHHHHHHHHHHHHHHHHHHSTTCCCCHHHHHHHHHHHHHHHTTCSEEEE
T ss_pred hcCCceeeeecccccchhhhhcccccCCcHHHHHHHHHHHHHHHHhHHhhccCCCccHHHHHHHHHHHHHHHhcchhhhh
Confidence 99999999999999999999999999999999999999998888776544 34578999999999999999999999999
Q ss_pred eeccCCccccccccCCccEEEEcCCCcchhhhcCCCHHHHHHHHHcccCCCceeeeccCCCchHHHHHHHhhhccCceEE
Q psy15432 211 EVGIGGRYDNTNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIMKPNCIAVTSANQRGPCKQILLETSRALNCVLL 290 (1255)
Q Consensus 211 EvG~GGr~D~tnii~~P~v~vITnIg~DHld~lG~Tle~Ia~~KagI~k~g~~~v~~~~q~~e~~~vl~~~a~~~~~~l~ 290 (1255)
|+|+||++|+||++ +|++++||||++||+++||+|+++||++|++|||++.++|+.. +++++.+++++.+.+.++.++
T Consensus 143 e~g~g~~~d~~~~~-~~~~~viTni~~dH~~~lg~tle~Ia~~K~~i~k~~~~~v~~~-~~~~~~~~i~~~~~~~~~~~~ 220 (296)
T d2gc6a2 143 EVGIGGDTDSTNVI-TPVVSVLTEVALDHQKLLGHTITAIAKHKAGIIKRGIPVVTGN-LVPDAAAVVAAKVATTGSQWL 220 (296)
T ss_dssp ECSSSSTTSTTCSC-CCSEEEECCCCSTTHHHHCSSHHHHHHHHHTTCCTTCCEEECC-CCHHHHHHHHHHHHHHTCCEE
T ss_pred hhHHHHhhhhhhcc-cceeecccccchHHHHhhhhHHHHHHHhhhccccccccccccc-ccHHHHHHHHHHHHhhCCccc
Confidence 99999999999987 7999999999999999999999999999999999999999887 788899999999999888888
Q ss_pred EcCCcce------------eeecC-----cccccCCCchhHHhhHHHHHHHHHHHH
Q psy15432 291 EAPSILN------------YRWRG-----QPLDEDWKSTVQSINISLAIQLAYLWM 329 (1255)
Q Consensus 291 ~~~~~~~------------~~~~~-----~~i~l~l~G~~q~~Na~lAia~a~~~l 329 (1255)
..+.... +.+.. ..+.++|+|.||++|+++|++++..+.
T Consensus 221 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~L~G~hn~~Na~~Aia~~~~l~ 276 (296)
T d2gc6a2 221 RFDRDFSVPKAKLHGWGQRFTYEDQDGRISDLEVPLVGDYQQRNMAIAIQTAKVYA 276 (296)
T ss_dssp EBTTTEEEEEEEECSSSEEEEEEETTEEEEEEEESCCSHHHHHHHHHHHHHHHHHH
T ss_pred ccCcceeeeccccccCCceEEEEcCCCccCcCCCCCCcHHHHHHHHHHHHHHHHHH
Confidence 7764211 11111 146789999999999999999998874
|
| >d2gc6a2 c.72.2.2 (A:1-296) Folylpolyglutamate synthetase {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribokinase-like superfamily: MurD-like peptide ligases, catalytic domain family: Folylpolyglutamate synthetase domain: Folylpolyglutamate synthetase species: Lactobacillus casei [TaxId: 1582]
Probab=100.00 E-value=2.5e-48 Score=436.87 Aligned_cols=259 Identities=25% Similarity=0.413 Sum_probs=231.6
Q ss_pred ccHHHHHHHHHhcchhHHHHHHhhccCCcccccccchHHHHHHHHHhcCcccccccceEEEecCCCCCccHHHHHHHHHH
Q psy15432 664 QSYVDAIKQLNTLQSNIRTIRESKLRKDPVEMQAVQVDQVVQYLGHLNITLDDIKKLNVIHISGTKGKGSTCAYCESILR 743 (1255)
Q Consensus 664 ~~y~~a~~~L~~lqsn~~~l~~~~~~g~~~~~~~~~v~~~~~~L~~Lg~~~~~~~~l~vIhVTGTnGKgST~aml~sILr 743 (1255)
|+|+|+++||+++.+. +. .++++||+++|++||+|+ .++++|||||||||||||+|+++||+
T Consensus 1 m~~~e~~~~l~~~~~~----------~~-----~~~l~r~~~~l~~lg~P~---~~lkvI~VTGTNGKtST~~~i~~IL~ 62 (296)
T d2gc6a2 1 MNYTETVAYIHSFPRL----------AK-----TGDHRRILTLLHALGNPQ---QQGRYIHVTGTNGKGSAANAIAHVLE 62 (296)
T ss_dssp CCHHHHHHHHHTCCCC----------C--------CCHHHHHHHHHTTCGG---GSSCEEEEECSSSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHhcCcC----------CC-----CCCHHHHHHHHHHcCCch---hhCCEEEEeccCcHHHHHHHHHHHHH
Confidence 7899999999997643 22 278999999999999998 67899999999999999999999999
Q ss_pred HCCCCeEEEcCcccccccceeeeCCeecChhhhhhHHHHHHHHHHHHhhc-CCCCCcHHHHHHHHHHHhhhcCCCCEEEE
Q psy15432 744 SHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTKYFWTVYNALHAKRKH-AEDMPAYFKFLTVMSFYVFVKEKPDAVIM 822 (1255)
Q Consensus 744 ~~G~rtGl~tSPhL~~~~ERI~InG~pIs~~~f~~~~~~v~~~l~~~~~~-~~~~pt~Fe~lT~mAf~~F~~~~vD~aVl 822 (1255)
++|++||+|+|||+.+++||+++||.+|+++.+...+..++..+..+... ....+++|++++++++.+|.+..+|++|+
T Consensus 63 ~~G~kvG~~tSP~~~~~~e~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~d~~i~ 142 (296)
T d2gc6a2 63 ASGLTVGLYTAPFIMRFNERIMIDHEPIPDAALVNAVAFVRAALERLQQQQADFNVTEFEFITALGYWYFRQRQVDVAVI 142 (296)
T ss_dssp HTTCCEEEECSSCSSCGGGGEEETTEECCHHHHHHHHHHHHHHHHHHHHHSTTCCCCHHHHHHHHHHHHHHHTTCSEEEE
T ss_pred hcCCceeeeecccccchhhhhcccccCCcHHHHHHHHHHHHHHHHhHHhhccCCCccHHHHHHHHHHHHHHHhcchhhhh
Confidence 99999999999999999999999999999999999999999988877554 45679999999999999999999999999
Q ss_pred ecccCCccccccccCCCcEEEEcCCCchhhhhcCCCHHHHHHHHhccccCCceEEEccCCCChhHHHHHHHhhhcCCeEE
Q psy15432 823 EVGIGGRYDNTNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIMKPNCIAVTSANQRGPCKQILLETSRALNCVLL 902 (1255)
Q Consensus 823 EVG~GGr~D~TNvi~~P~VavITnIg~DHl~~LG~TleeIA~~KagI~K~g~~av~~~~qd~~~~~vl~~~A~~~~~~l~ 902 (1255)
|+|+||++|+||++ +|++++||||+.||+++||+|+++||++|++|||++.++|+.. +++++.+++++.+.+.++.++
T Consensus 143 e~g~g~~~d~~~~~-~~~~~viTni~~dH~~~lg~tle~Ia~~K~~i~k~~~~~v~~~-~~~~~~~~i~~~~~~~~~~~~ 220 (296)
T d2gc6a2 143 EVGIGGDTDSTNVI-TPVVSVLTEVALDHQKLLGHTITAIAKHKAGIIKRGIPVVTGN-LVPDAAAVVAAKVATTGSQWL 220 (296)
T ss_dssp ECSSSSTTSTTCSC-CCSEEEECCCCSTTHHHHCSSHHHHHHHHHTTCCTTCCEEECC-CCHHHHHHHHHHHHHHTCCEE
T ss_pred hhHHHHhhhhhhcc-cceeecccccchHHHHhhhhHHHHHHHhhhccccccccccccc-ccHHHHHHHHHHHHhhCCccc
Confidence 99999999999997 6999999999999999999999999999999999999999987 788899999999999999988
Q ss_pred EcCCccc------------eeccC-----CccccCCCchhHHHHHHHHHHHHHHHHH
Q psy15432 903 EAPSILN------------YRWRG-----QPLDEDWKSTVQSINISLAIQLAYLWMF 942 (1255)
Q Consensus 903 ~~~~~~~------------~~~~~-----~~v~l~L~G~hq~~Na~lAiala~~~l~ 942 (1255)
.++.... +.+.. ..+.++|+|.||++|+++|++++..++.
T Consensus 221 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~L~G~hn~~Na~~Aia~~~~l~~ 277 (296)
T d2gc6a2 221 RFDRDFSVPKAKLHGWGQRFTYEDQDGRISDLEVPLVGDYQQRNMAIAIQTAKVYAK 277 (296)
T ss_dssp EBTTTEEEEEEEECSSSEEEEEEETTEEEEEEEESCCSHHHHHHHHHHHHHHHHHHH
T ss_pred ccCcceeeeccccccCCceEEEEcCCCccCcCCCCCCcHHHHHHHHHHHHHHHHHHh
Confidence 8765211 11111 1467899999999999999999988653
|
| >d1e8ca3 c.72.2.1 (A:104-337) UDP-N-acetylmuramyl tripeptide synthetase MurE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribokinase-like superfamily: MurD-like peptide ligases, catalytic domain family: MurCDEF domain: UDP-N-acetylmuramyl tripeptide synthetase MurE species: Escherichia coli [TaxId: 562]
Probab=99.93 E-value=4.6e-26 Score=243.14 Aligned_cols=187 Identities=17% Similarity=0.146 Sum_probs=132.4
Q ss_pred ccceEEEecCCCCCccHHHHHHHHHHHCCCCeEEEcCcccccccceeeeCCeecChhhhhhHHHHHHHHHHHHhhcCCCC
Q psy15432 718 KKLNVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTKYFWTVYNALHAKRKHAEDM 797 (1255)
Q Consensus 718 ~~l~vIhVTGTnGKgST~aml~sILr~~G~rtGl~tSPhL~~~~ERI~InG~pIs~~~f~~~~~~v~~~l~~~~~~~~~~ 797 (1255)
+++++|+||||||||||++|+++||+.+|+++++.++.+ ..+++..+....++.
T Consensus 3 ~~~~vI~ITGT~GKTTt~~~l~~iL~~~g~~~~~~gt~g-------~~~~~~~~~~~~~t~------------------- 56 (234)
T d1e8ca3 3 DNLRLVGVTGTNGKTTTTQLLAQWSQLLGEISAVMGTVG-------NGLLGKVIPTENTTG------------------- 56 (234)
T ss_dssp GSSEEEEEESSSCHHHHHHHHHHHHHHTTCCEEEEETTE-------EEETTCCBCCSSSSC-------------------
T ss_pred cCCeEEEEECCCcHHHHHHHHHHHHHHCCCCeEEECccc-------cCcCccccccccccc-------------------
Confidence 578999999999999999999999999999999998864 444554443332222
Q ss_pred CcHHHHHHHHHHHhhhcCCCCEEEEecccCCcccc-ccccCCCcEEEEcCCCchhhhhcCCCHHHHHHHHhcccc--CCc
Q psy15432 798 PAYFKFLTVMSFYVFVKEKPDAVIMEVGIGGRYDN-TNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIMK--PNC 874 (1255)
Q Consensus 798 pt~Fe~lT~mAf~~F~~~~vD~aVlEVG~GGr~D~-TNvi~~P~VavITnIg~DHl~~LG~TleeIA~~KagI~K--~g~ 874 (1255)
...+....+ ..+...+++++++|++..|..+. ++.+ +|++++||||+.||+++|| ++|+|+.+|+.||+ +.+
T Consensus 57 -~~~~~~~~l--~~~~~~~~~~~~le~ss~g~~~~~~~~~-~p~i~vitNi~~dHld~~~-~~e~~~~~K~~i~~~~~~~ 131 (234)
T d1e8ca3 57 -SAVDVQHEL--AGLVDQGATFCAMEVSSHGLVQHRVAAL-KFAASVFTNLSRDHLDYHG-DMEHYEAAKWLLYSEHHCG 131 (234)
T ss_dssp -CHHHHHHHH--HHHHHTTCCEEEEECCHHHHHTTTTTTC-BCSEEEECCCCSCCHHHHS-SHHHHHHHHHHHHHTSBCC
T ss_pred -cchhHHHHH--HHHhhcCCceeeeccCccchhhhhhccc-ccceEEEeeccccchhhhc-cccceehhhhccccccccc
Confidence 122222222 23478899999999997776554 5555 7999999999999999999 99999999999995 445
Q ss_pred eEEEccCCCChhHHHHHHHhhhcCCeEEEcCC---------------------ccc--eec--cCCccccCCCchhHHHH
Q psy15432 875 IAVTSANQRGPCKQILLETSRALNCVLLEAPS---------------------ILN--YRW--RGQPLDEDWKSTVQSIN 929 (1255)
Q Consensus 875 ~av~~~~qd~~~~~vl~~~A~~~~~~l~~~~~---------------------~~~--~~~--~~~~v~l~L~G~hq~~N 929 (1255)
.+|++. |++....+.+.... ...+.... ... +.. ....++++++|.||++|
T Consensus 132 ~~iin~--Dd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~G~hni~N 207 (234)
T d1e8ca3 132 QAIINA--DDEVGRRWLAKLPD--AVAVSMEDHINPNCHGRWLKATEVNYHDSGATIRFSSSWGDGEIESHLMGAFNVSN 207 (234)
T ss_dssp EEEEET--TSHHHHHHHTTCTT--CEEEESSSCCCTTTCSEEEEEEEEEECSSCEEEEEEETTCCEEEEECSCSHHHHHH
T ss_pred eeEEec--ccccchhhhhhhcc--ceeeeeccccccccccccccccccccccccceeeeecCCceEEEEeCCCCHHHHHH
Confidence 677887 45554444433221 11111110 000 111 12356789999999999
Q ss_pred HHHHHHHHHH
Q psy15432 930 ISLAIQLAYL 939 (1255)
Q Consensus 930 a~lAiala~~ 939 (1255)
+++|+++|+.
T Consensus 208 ~laAiava~~ 217 (234)
T d1e8ca3 208 LLLALATLLA 217 (234)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999876
|
| >d1e8ca3 c.72.2.1 (A:104-337) UDP-N-acetylmuramyl tripeptide synthetase MurE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribokinase-like superfamily: MurD-like peptide ligases, catalytic domain family: MurCDEF domain: UDP-N-acetylmuramyl tripeptide synthetase MurE species: Escherichia coli [TaxId: 562]
Probab=99.93 E-value=7.1e-26 Score=241.63 Aligned_cols=188 Identities=17% Similarity=0.147 Sum_probs=134.4
Q ss_pred CCccEEEEcCCCChhHHHHHHHHHHHHCCCCeEEEcCCcccccceeEEeCCeecChhhhhhHHHHHHHHHHhhhhccCCc
Q psy15432 106 KKLNVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTKYFWTVYNALHAKRKHAEDM 185 (1255)
Q Consensus 106 ~~l~vIhVtGTnGKgST~a~l~sIL~~~G~k~Gl~tSPhL~~~rERI~InG~~is~~~ft~~~~~v~~~l~~~~~~~~~~ 185 (1255)
.++++|+||||||||||+.|+++||+++|++++++++.+ ..+++..+.... ++ +..
T Consensus 3 ~~~~vI~ITGT~GKTTt~~~l~~iL~~~g~~~~~~gt~g-------~~~~~~~~~~~~-~t----------------~~~ 58 (234)
T d1e8ca3 3 DNLRLVGVTGTNGKTTTTQLLAQWSQLLGEISAVMGTVG-------NGLLGKVIPTEN-TT----------------GSA 58 (234)
T ss_dssp GSSEEEEEESSSCHHHHHHHHHHHHHHTTCCEEEEETTE-------EEETTCCBCCSS-SS----------------CCH
T ss_pred cCCeEEEEECCCcHHHHHHHHHHHHHHCCCCeEEECccc-------cCcCcccccccc-cc----------------ccc
Confidence 478999999999999999999999999999999998866 566665554222 11 122
Q ss_pred chHHHHHHHHhhhhhhccCCCEEEEeeccCCcccc-ccccCCccEEEEcCCCcchhhhcCCCHHHHHHHHHcccCC--Cc
Q psy15432 186 PAYFKFLTVMSFYVFVKEKPDAVIMEVGIGGRYDN-TNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIMKP--NC 262 (1255)
Q Consensus 186 p~~Fe~Lt~~A~~~F~~~~vD~aVlEvG~GGr~D~-tnii~~P~v~vITnIg~DHld~lG~Tle~Ia~~KagI~k~--g~ 262 (1255)
...+..+..+ ...+++++++|++..|..+. ++++ +|++++||||+.||+|+|| ++++|+.+|+.||+. ..
T Consensus 59 ~~~~~~l~~~-----~~~~~~~~~le~ss~g~~~~~~~~~-~p~i~vitNi~~dHld~~~-~~e~~~~~K~~i~~~~~~~ 131 (234)
T d1e8ca3 59 VDVQHELAGL-----VDQGATFCAMEVSSHGLVQHRVAAL-KFAASVFTNLSRDHLDYHG-DMEHYEAAKWLLYSEHHCG 131 (234)
T ss_dssp HHHHHHHHHH-----HHTTCCEEEEECCHHHHHTTTTTTC-BCSEEEECCCCSCCHHHHS-SHHHHHHHHHHHHHTSBCC
T ss_pred hhHHHHHHHH-----hhcCCceeeeccCccchhhhhhccc-ccceEEEeeccccchhhhc-cccceehhhhccccccccc
Confidence 3344444444 78999999999998876554 5555 7999999999999999999 999999999999953 33
Q ss_pred eeeeccCCCchHHHHHHHhhhccCceEEEcCC---------------------cce--eeec--CcccccCCCchhHHhh
Q psy15432 263 IAVTSANQRGPCKQILLETSRALNCVLLEAPS---------------------ILN--YRWR--GQPLDEDWKSTVQSIN 317 (1255)
Q Consensus 263 ~~v~~~~q~~e~~~vl~~~a~~~~~~l~~~~~---------------------~~~--~~~~--~~~i~l~l~G~~q~~N 317 (1255)
.+|++. |++....+.+..... ..+.... ... +... ..++.+++.|.||++|
T Consensus 132 ~~iin~--Dd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~G~hni~N 207 (234)
T d1e8ca3 132 QAIINA--DDEVGRRWLAKLPDA--VAVSMEDHINPNCHGRWLKATEVNYHDSGATIRFSSSWGDGEIESHLMGAFNVSN 207 (234)
T ss_dssp EEEEET--TSHHHHHHHTTCTTC--EEEESSSCCCTTTCSEEEEEEEEEECSSCEEEEEEETTCCEEEEECSCSHHHHHH
T ss_pred eeEEec--ccccchhhhhhhccc--eeeeeccccccccccccccccccccccccceeeeecCCceEEEEeCCCCHHHHHH
Confidence 466666 455544444333221 1111110 000 1111 1256789999999999
Q ss_pred HHHHHHHHHHH
Q psy15432 318 ISLAIQLAYLW 328 (1255)
Q Consensus 318 a~lAia~a~~~ 328 (1255)
+++|+++|..+
T Consensus 208 ~laAiava~~l 218 (234)
T d1e8ca3 208 LLLALATLLAL 218 (234)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHc
Confidence 99999998765
|
| >d2jfga3 c.72.2.1 (A:94-297) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribokinase-like superfamily: MurD-like peptide ligases, catalytic domain family: MurCDEF domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD species: Escherichia coli [TaxId: 562]
Probab=99.91 E-value=2.6e-24 Score=226.01 Aligned_cols=163 Identities=13% Similarity=0.152 Sum_probs=121.2
Q ss_pred cceEEEecCCCCCccHHHHHHHHHHHCCCCeEEEcCcccccccceeeeCCeecChhhhhhHHHHHHHHHHHHhhcCCCCC
Q psy15432 719 KLNVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTKYFWTVYNALHAKRKHAEDMP 798 (1255)
Q Consensus 719 ~l~vIhVTGTnGKgST~aml~sILr~~G~rtGl~tSPhL~~~~ERI~InG~pIs~~~f~~~~~~v~~~l~~~~~~~~~~p 798 (1255)
+.|+|+||||||||||++|+++||+.+|+++++.++.+ .|..
T Consensus 10 ~~~vI~VTGT~GKTTt~~~l~~iL~~~g~~~~~~~~~~------------~~~~-------------------------- 51 (204)
T d2jfga3 10 QAPIVAITGSNGKSTVTTLVGEMAKAAGVNVGVGGNIG------------LPAL-------------------------- 51 (204)
T ss_dssp CSCEEEEECSSSHHHHHHHHHHHHHHTTCCEEEEETTS------------SCGG--------------------------
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHhcCCCcccCCccc------------cccc--------------------------
Confidence 46899999999999999999999999999999888764 2211
Q ss_pred cHHHHHHHHHHHhhhcCCCCEEEEecccCCccccccccCCCcEEEEcCCCchhhhhcCCCHHHHHHHHhccccCCceEEE
Q psy15432 799 AYFKFLTVMSFYVFVKEKPDAVIMEVGIGGRYDNTNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIMKPNCIAVT 878 (1255)
Q Consensus 799 t~Fe~lT~mAf~~F~~~~vD~aVlEVG~GGr~D~TNvi~~P~VavITnIg~DHl~~LG~TleeIA~~KagI~K~g~~av~ 878 (1255)
.....+.|++|+|+|+.+.-+...+ +|+++|||||+.||++++|+++++++..|..|++++..+|+
T Consensus 52 ------------~~~~~~~~~~V~E~~~~~~~~~~~~--~p~i~viTNi~~dHld~~~~~~~~~~~~~~~i~~~~~~~v~ 117 (204)
T d2jfga3 52 ------------MLLDDECELYVLELSSFQLETTSSL--QAVAATILNVTEDHMDRYPFGLQQYRAAKLRIYENAKVCVV 117 (204)
T ss_dssp ------------GGCCTTCCEEEEECCHHHHHTCCCC--CCSEEEECCCCSCCGGGCTTHHHHHHHHHHGGGTTCSEEEE
T ss_pred ------------ccccccceEEEEeeccccccccccc--ccccceeeeeccccccccccHHHHHHHHHHhhhccccceee
Confidence 0145688999999999743333333 79999999999999999997799999999999999999988
Q ss_pred ccCCCChhHHHHHHHhhhcCCeEEEcCCc-cc-----------eeccCC----ccccCCCchhHHHHHHHHHHHHHH
Q psy15432 879 SANQRGPCKQILLETSRALNCVLLEAPSI-LN-----------YRWRGQ----PLDEDWKSTVQSINISLAIQLAYL 939 (1255)
Q Consensus 879 ~~~qd~~~~~vl~~~A~~~~~~l~~~~~~-~~-----------~~~~~~----~v~l~L~G~hq~~Na~lAiala~~ 939 (1255)
+. +++.... +. ....+.+.++.. .+ +...+. ...++++|.||++|+++|+++|+.
T Consensus 118 n~-dd~~~~~-~~----~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~hn~~N~laAia~a~~ 188 (204)
T d2jfga3 118 NA-DDALTMP-IR----GADERCVSFGVNMGDYHLNHQQGETWLRVKGEKVLNVKEMKLSGQHNYTNALAALALADA 188 (204)
T ss_dssp ET-TCGGGSC-TT----CCCTTEEEECSSSSSEEEEEETTEEEEEETTEEEEEGGGCSCCSHHHHHHHHHHHHHHHH
T ss_pred hh-hhHHHHH-HH----ccCCceEEeeccccchhhcccccccceeecCCccccccccCCCcHHHHHHHHHHHHHHHH
Confidence 87 4433322 21 122333333321 00 011111 125899999999999999999886
|
| >d2jfga3 c.72.2.1 (A:94-297) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribokinase-like superfamily: MurD-like peptide ligases, catalytic domain family: MurCDEF domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD species: Escherichia coli [TaxId: 562]
Probab=99.90 E-value=6.2e-24 Score=223.14 Aligned_cols=166 Identities=14% Similarity=0.172 Sum_probs=120.6
Q ss_pred CccEEEEcCCCChhHHHHHHHHHHHHCCCCeEEEcCCcccccceeEEeCCeecChhhhhhHHHHHHHHHHhhhhccCCcc
Q psy15432 107 KLNVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTKYFWTVYNALHAKRKHAEDMP 186 (1255)
Q Consensus 107 ~l~vIhVtGTnGKgST~a~l~sIL~~~G~k~Gl~tSPhL~~~rERI~InG~~is~~~ft~~~~~v~~~l~~~~~~~~~~p 186 (1255)
+.|+|+||||||||||++||++||+++|+++++.++.++ |..
T Consensus 10 ~~~vI~VTGT~GKTTt~~~l~~iL~~~g~~~~~~~~~~~------------~~~-------------------------- 51 (204)
T d2jfga3 10 QAPIVAITGSNGKSTVTTLVGEMAKAAGVNVGVGGNIGL------------PAL-------------------------- 51 (204)
T ss_dssp CSCEEEEECSSSHHHHHHHHHHHHHHTTCCEEEEETTSS------------CGG--------------------------
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHhcCCCcccCCcccc------------ccc--------------------------
Confidence 458999999999999999999999999999999887652 111
Q ss_pred hHHHHHHHHhhhhhhccCCCEEEEeeccCCccccccccCCccEEEEcCCCcchhhhcCCCHHHHHHHHHcccCCCceeee
Q psy15432 187 AYFKFLTVMSFYVFVKEKPDAVIMEVGIGGRYDNTNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIMKPNCIAVT 266 (1255)
Q Consensus 187 ~~Fe~Lt~~A~~~F~~~~vD~aVlEvG~GGr~D~tnii~~P~v~vITnIg~DHld~lG~Tle~Ia~~KagI~k~g~~~v~ 266 (1255)
.....+.|++|+|+|+++.-+.-.+ +|+++|||||+.||+|++|+++++++..|..|++++..+|+
T Consensus 52 ------------~~~~~~~~~~V~E~~~~~~~~~~~~--~p~i~viTNi~~dHld~~~~~~~~~~~~~~~i~~~~~~~v~ 117 (204)
T d2jfga3 52 ------------MLLDDECELYVLELSSFQLETTSSL--QAVAATILNVTEDHMDRYPFGLQQYRAAKLRIYENAKVCVV 117 (204)
T ss_dssp ------------GGCCTTCCEEEEECCHHHHHTCCCC--CCSEEEECCCCSCCGGGCTTHHHHHHHHHHGGGTTCSEEEE
T ss_pred ------------ccccccceEEEEeeccccccccccc--ccccceeeeeccccccccccHHHHHHHHHHhhhccccceee
Confidence 0145688999999999853333333 79999999999999999997799999999999999988888
Q ss_pred ccCCCchHHHHHHHhhhccCceEEEcCCcc----------eeeecCc----ccccCCCchhHHhhHHHHHHHHHHH
Q psy15432 267 SANQRGPCKQILLETSRALNCVLLEAPSIL----------NYRWRGQ----PLDEDWKSTVQSINISLAIQLAYLW 328 (1255)
Q Consensus 267 ~~~q~~e~~~vl~~~a~~~~~~l~~~~~~~----------~~~~~~~----~i~l~l~G~~q~~Na~lAia~a~~~ 328 (1255)
+. +++.... +.. .......+...... .+...+. ..+++++|.||++|+++|+++|..+
T Consensus 118 n~-dd~~~~~-~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~hn~~N~laAia~a~~l 189 (204)
T d2jfga3 118 NA-DDALTMP-IRG--ADERCVSFGVNMGDYHLNHQQGETWLRVKGEKVLNVKEMKLSGQHNYTNALAALALADAA 189 (204)
T ss_dssp ET-TCGGGSC-TTC--CCTTEEEECSSSSSEEEEEETTEEEEEETTEEEEEGGGCSCCSHHHHHHHHHHHHHHHHT
T ss_pred hh-hhHHHHH-HHc--cCCceEEeeccccchhhcccccccceeecCCccccccccCCCcHHHHHHHHHHHHHHHHc
Confidence 76 4443322 211 11112222221110 0111111 2358999999999999999998765
|
| >d1p3da3 c.72.2.1 (A:107-321) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribokinase-like superfamily: MurD-like peptide ligases, catalytic domain family: MurCDEF domain: UDP-N-acetylmuramate-alanine ligase MurC species: Haemophilus influenzae [TaxId: 727]
Probab=99.90 E-value=2.9e-23 Score=219.89 Aligned_cols=166 Identities=14% Similarity=0.123 Sum_probs=114.6
Q ss_pred cEEEEcCCCChhHHHHHHHHHHHHCCCCeEEEcCCcccccceeEEeCCeecChhhhhhHHHHHHHHHHhhhhccCCcchH
Q psy15432 109 NVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTKYFWTVYNALHAKRKHAEDMPAY 188 (1255)
Q Consensus 109 ~vIhVtGTnGKgST~a~l~sIL~~~G~k~Gl~tSPhL~~~rERI~InG~~is~~~ft~~~~~v~~~l~~~~~~~~~~p~~ 188 (1255)
++|+||||||||||+.|+++||+++|++++.+++.....+....
T Consensus 13 ~~I~ITGTnGKTTt~~~l~~iL~~~~~~~~~~~g~~~~~~~~~~------------------------------------ 56 (215)
T d1p3da3 13 HGIAVAGTHGKTTTTAMISMIYTQAKLDPTFVNGGLVKSAGKNA------------------------------------ 56 (215)
T ss_dssp EEEEEESSSCHHHHHHHHHHHHHHTTCCCEEEEEEEETTTTEEE------------------------------------
T ss_pred CEEEEECCCCHHHHHHHHHHHHHhCCCCceEeeCceeccCcccc------------------------------------
Confidence 79999999999999999999999999998876543311111110
Q ss_pred HHHHHHHhhhhhhccCCCEEEEeeccCCccccccccCCccEEEEcCCCcchhhhcCCCHHHHHHHHHcccC---CCceee
Q psy15432 189 FKFLTVMSFYVFVKEKPDAVIMEVGIGGRYDNTNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIMK---PNCIAV 265 (1255)
Q Consensus 189 Fe~Lt~~A~~~F~~~~vD~aVlEvG~GGr~D~tnii~~P~v~vITnIg~DHld~lG~Tle~Ia~~KagI~k---~g~~~v 265 (1255)
.-...+++|+|++.... ...++ +|+++|||||+.||+|+++.++|.|+.+|+.|++ ++..+|
T Consensus 57 ------------~~~~~~~~v~E~~~~~~-~~~~~--~p~~~viTNi~~dHld~~~~s~e~~~~~K~~i~~~~~~~g~~V 121 (215)
T d1p3da3 57 ------------HLGASRYLIAEADESDA-SFLHL--QPMVSVVTNMEPDHMDTYEGDFEKMKATYVKFLHNLPFYGLAV 121 (215)
T ss_dssp ------------ECCSSSEEEEECCCTTS-GGGGC--CCSEEEECCCCCCSGGGGTTCHHHHHHHHHHHHTTSCTTCEEE
T ss_pred ------------ccCCCceEEEEcCCccc-cceeE--cCCEEEEecccccccccccCCHHHHHHHHHHHHhcCCCCCEEE
Confidence 11345899999987632 12233 8999999999999999885599999999999986 455677
Q ss_pred eccCCCchHHHHHHHhhhccCceEEEcCCccee-----e----------e-c---CcccccCCCchhHHhhHHHHHHHHH
Q psy15432 266 TSANQRGPCKQILLETSRALNCVLLEAPSILNY-----R----------W-R---GQPLDEDWKSTVQSINISLAIQLAY 326 (1255)
Q Consensus 266 ~~~~q~~e~~~vl~~~a~~~~~~l~~~~~~~~~-----~----------~-~---~~~i~l~l~G~~q~~Na~lAia~a~ 326 (1255)
++. +++.... +.+.... ....|.......+ . . . ...+.++++|.||++|+++|+++|.
T Consensus 122 ~n~-dd~~~~~-~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~hn~~N~laAia~a~ 198 (215)
T d1p3da3 122 MCA-DDPVLME-LVPKVGR-QVITYGFSEQADYRIEDYEQTGFQGHYTVICPNNERINVLLNVPGKHNALNATAALAVAK 198 (215)
T ss_dssp EET-TCHHHHH-HHHHHCS-EEEEEESSTTCSEEEEEEEEETTEEEEEEECTTCCEEEEEESSCSHHHHHHHHHHHHHHH
T ss_pred EeC-cchHHHH-HHHhcCC-ceEEEcccccccccccccccccccccccccccccceeeEEeCCCCHHHHHHHHHHHHHHH
Confidence 776 4444433 3333221 1223333221110 0 0 0 1146789999999999999999887
Q ss_pred HH
Q psy15432 327 LW 328 (1255)
Q Consensus 327 ~~ 328 (1255)
.+
T Consensus 199 ~l 200 (215)
T d1p3da3 199 EE 200 (215)
T ss_dssp HT
T ss_pred Hc
Confidence 65
|
| >d1p3da3 c.72.2.1 (A:107-321) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribokinase-like superfamily: MurD-like peptide ligases, catalytic domain family: MurCDEF domain: UDP-N-acetylmuramate-alanine ligase MurC species: Haemophilus influenzae [TaxId: 727]
Probab=99.89 E-value=4.8e-23 Score=218.23 Aligned_cols=163 Identities=15% Similarity=0.109 Sum_probs=115.0
Q ss_pred eEEEecCCCCCccHHHHHHHHHHHCCCCeEEEcCcccccccceeeeCCeecChhhhhhHHHHHHHHHHHHhhcCCCCCcH
Q psy15432 721 NVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTKYFWTVYNALHAKRKHAEDMPAY 800 (1255)
Q Consensus 721 ~vIhVTGTnGKgST~aml~sILr~~G~rtGl~tSPhL~~~~ERI~InG~pIs~~~f~~~~~~v~~~l~~~~~~~~~~pt~ 800 (1255)
++|+||||||||||+.|+++||+.+|++++..++.....+....
T Consensus 13 ~~I~ITGTnGKTTt~~~l~~iL~~~~~~~~~~~g~~~~~~~~~~------------------------------------ 56 (215)
T d1p3da3 13 HGIAVAGTHGKTTTTAMISMIYTQAKLDPTFVNGGLVKSAGKNA------------------------------------ 56 (215)
T ss_dssp EEEEEESSSCHHHHHHHHHHHHHHTTCCCEEEEEEEETTTTEEE------------------------------------
T ss_pred CEEEEECCCCHHHHHHHHHHHHHhCCCCceEeeCceeccCcccc------------------------------------
Confidence 79999999999999999999999999998876543211111111
Q ss_pred HHHHHHHHHHhhhcCCCCEEEEecccCCccccccccCCCcEEEEcCCCchhhhhcCCCHHHHHHHHhcccc---CCceEE
Q psy15432 801 FKFLTVMSFYVFVKEKPDAVIMEVGIGGRYDNTNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIMK---PNCIAV 877 (1255)
Q Consensus 801 Fe~lT~mAf~~F~~~~vD~aVlEVG~GGr~D~TNvi~~P~VavITnIg~DHl~~LG~TleeIA~~KagI~K---~g~~av 877 (1255)
.-...+++|+|++.... ....+ +|+++|||||+.||+|+++.++|.|+++|..|++ +++.+|
T Consensus 57 ------------~~~~~~~~v~E~~~~~~-~~~~~--~p~~~viTNi~~dHld~~~~s~e~~~~~K~~i~~~~~~~g~~V 121 (215)
T d1p3da3 57 ------------HLGASRYLIAEADESDA-SFLHL--QPMVSVVTNMEPDHMDTYEGDFEKMKATYVKFLHNLPFYGLAV 121 (215)
T ss_dssp ------------ECCSSSEEEEECCCTTS-GGGGC--CCSEEEECCCCCCSGGGGTTCHHHHHHHHHHHHTTSCTTCEEE
T ss_pred ------------ccCCCceEEEEcCCccc-cceeE--cCCEEEEecccccccccccCCHHHHHHHHHHHHhcCCCCCEEE
Confidence 11345899999986521 12222 7999999999999999885599999999999986 577888
Q ss_pred EccCCCChhHHHHHHHhhhcCCeEEEcCCccc-----------------e--ecc--CCccccCCCchhHHHHHHHHHHH
Q psy15432 878 TSANQRGPCKQILLETSRALNCVLLEAPSILN-----------------Y--RWR--GQPLDEDWKSTVQSINISLAIQL 936 (1255)
Q Consensus 878 ~~~~qd~~~~~vl~~~A~~~~~~l~~~~~~~~-----------------~--~~~--~~~v~l~L~G~hq~~Na~lAial 936 (1255)
++. |++....+... ..++++.++.... . ... ...+.++++|.||++|+++|+++
T Consensus 122 ~n~--dd~~~~~~~~~---~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~hn~~N~laAia~ 196 (215)
T d1p3da3 122 MCA--DDPVLMELVPK---VGRQVITYGFSEQADYRIEDYEQTGFQGHYTVICPNNERINVLLNVPGKHNALNATAALAV 196 (215)
T ss_dssp EET--TCHHHHHHHHH---HCSEEEEEESSTTCSEEEEEEEEETTEEEEEEECTTCCEEEEEESSCSHHHHHHHHHHHHH
T ss_pred EeC--cchHHHHHHHh---cCCceEEEcccccccccccccccccccccccccccccceeeEEeCCCCHHHHHHHHHHHHH
Confidence 887 44443333332 2344444421100 0 001 12467899999999999999998
Q ss_pred HHH
Q psy15432 937 AYL 939 (1255)
Q Consensus 937 a~~ 939 (1255)
|..
T Consensus 197 a~~ 199 (215)
T d1p3da3 197 AKE 199 (215)
T ss_dssp HHH
T ss_pred HHH
Confidence 876
|
| >d1j6ua3 c.72.2.1 (A:89-295) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribokinase-like superfamily: MurD-like peptide ligases, catalytic domain family: MurCDEF domain: UDP-N-acetylmuramate-alanine ligase MurC species: Thermotoga maritima [TaxId: 2336]
Probab=99.89 E-value=1.2e-23 Score=222.04 Aligned_cols=168 Identities=17% Similarity=0.104 Sum_probs=114.6
Q ss_pred cceEEEecCCCCCccHHHHHHHHHHHCCCCeEEEcCcccccccceeeeCCeecChhhhhhHHHHHHHHHHHHhhcCCCCC
Q psy15432 719 KLNVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTKYFWTVYNALHAKRKHAEDMP 798 (1255)
Q Consensus 719 ~l~vIhVTGTnGKgST~aml~sILr~~G~rtGl~tSPhL~~~~ERI~InG~pIs~~~f~~~~~~v~~~l~~~~~~~~~~p 798 (1255)
+.++|+||||||||||++|+++||+..|++++.+...- +.++...
T Consensus 13 ~~~~iAITGTnGKTTt~~~l~~iL~~~g~~~~~~~g~~-----------~~~~~~~------------------------ 57 (207)
T d1j6ua3 13 KKEEFAVTGTDGKTTTTAMVAHVLKHLRKSPTVFLGGI-----------MDSLEHG------------------------ 57 (207)
T ss_dssp CCCEEEEECSSSHHHHHHHHHHHHHHTTCCCEEECSSC-----------CTTSTTS------------------------
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHhCCCCCeEEECCc-----------cccccch------------------------
Confidence 45799999999999999999999999999876652210 1222111
Q ss_pred cHHHHHHHHHHHhhhcCCCCEEEEecccCCccccccccCCCcEEEEcCCCchhhhhcCCCHHHHHHHHhccccCCceEEE
Q psy15432 799 AYFKFLTVMSFYVFVKEKPDAVIMEVGIGGRYDNTNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIMKPNCIAVT 878 (1255)
Q Consensus 799 t~Fe~lT~mAf~~F~~~~vD~aVlEVG~GGr~D~TNvi~~P~VavITnIg~DHl~~LG~TleeIA~~KagI~K~g~~av~ 878 (1255)
....+.+++|+|++...+. ...+ +|+++|||||+.||+++||++++.|+..|..|++.+..+|+
T Consensus 58 -------------~~~~~~~~~v~e~~e~~~~--~~~~-~p~iaviTNI~~dHLd~~~~~~~~~~~~k~~~~~~~~~~i~ 121 (207)
T d1j6ua3 58 -------------NYEKGNGPVVYELDESEEF--FSEF-SPNYLIITNARGDHLENYGNSLTRYRSAFEKISRNTDLVVT 121 (207)
T ss_dssp -------------SEECCSSCEEEEECTTSGG--GGGC-CCSEEEECCCCCCCGGGGTTCHHHHHHHHHHHHHTCSEEEE
T ss_pred -------------hccCCCcceeEEeeechhh--hhhh-hhceeeeeechhhhhhccCccccccccccchhhhhcccccc
Confidence 1456778999999765322 2333 79999999999999999998999999999999998888888
Q ss_pred ccCCCChhHHHHHHHhhhcCCeEEEc-----CCcc---ceeccC---CccccCCCchhHHHHHHHHHHHHHH
Q psy15432 879 SANQRGPCKQILLETSRALNCVLLEA-----PSIL---NYRWRG---QPLDEDWKSTVQSINISLAIQLAYL 939 (1255)
Q Consensus 879 ~~~qd~~~~~vl~~~A~~~~~~l~~~-----~~~~---~~~~~~---~~v~l~L~G~hq~~Na~lAiala~~ 939 (1255)
+. |++....+...........+.+ .... .+...+ ..++++++|.||++|+++|+++|..
T Consensus 122 n~--dd~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~hn~~NalaAiava~~ 191 (207)
T d1j6ua3 122 FA--EDELTSHLGDVTFGVKKGTYTLEMRSASRAEQKAMVEKNGKRYLELKLKVPGFHNVLNALAVIALFDS 191 (207)
T ss_dssp ET--TCTTTGGGCSEEECSSSSSEEEEEEEECSSCEEEEEEETTEEEEEEEESSCSHHHHHHHHHHHHHHHH
T ss_pred cc--cccccccccccccccccccccccccccccccccccccccCcEEEEEEeCCCcHHHHHHHHHHHHHHHH
Confidence 76 4433322221110000000000 0000 001111 1467899999999999999998876
|
| >d1gg4a4 c.72.2.1 (A:99-312) UDP-murNac-tripeptide D-alanyl-D-alanine-adding enzyme MurF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribokinase-like superfamily: MurD-like peptide ligases, catalytic domain family: MurCDEF domain: UDP-murNac-tripeptide D-alanyl-D-alanine-adding enzyme MurF species: Escherichia coli [TaxId: 562]
Probab=99.89 E-value=8e-24 Score=222.25 Aligned_cols=169 Identities=17% Similarity=0.161 Sum_probs=111.6
Q ss_pred eEEEecCCCCCccHHHHHHHHHHHCCCCeEEEcCcccccccceeeeCCeecChhhhhhHHHHHHHHHHHHhhcCCCCCcH
Q psy15432 721 NVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTKYFWTVYNALHAKRKHAEDMPAY 800 (1255)
Q Consensus 721 ~vIhVTGTnGKgST~aml~sILr~~G~rtGl~tSPhL~~~~ERI~InG~pIs~~~f~~~~~~v~~~l~~~~~~~~~~pt~ 800 (1255)
+||+||||||||||++|+++||+.+|+++++.+|- ++++ |.+
T Consensus 3 kvI~VTGTnGKTTt~~mi~~iL~~~g~~~~~~g~~-----n~~~---g~~------------------------------ 44 (214)
T d1gg4a4 3 RVVALTGSSGKTSVKEMTAAILSQCGNTLYTAGNL-----NNDI---GVP------------------------------ 44 (214)
T ss_dssp EEEEEECSSCHHHHHHHHHHHHTTTSCEEECCTTC-----CSTT---HHH------------------------------
T ss_pred CEEEEeCCCcHHHHHHHHHHHHHhCCCCEEEeCcc-----cCcc---ccc------------------------------
Confidence 79999999999999999999999999988876652 2222 110
Q ss_pred HHHHHHHHHHhhhcCCCCEEEEecccC--CccccccccCCCcEEEEcCCCchhhhhcCCCHHHHHHHHhcccc---CCce
Q psy15432 801 FKFLTVMSFYVFVKEKPDAVIMEVGIG--GRYDNTNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIMK---PNCI 875 (1255)
Q Consensus 801 Fe~lT~mAf~~F~~~~vD~aVlEVG~G--Gr~D~TNvi~~P~VavITnIg~DHl~~LG~TleeIA~~KagI~K---~g~~ 875 (1255)
........+.++.++|++.. |..+.....-.|++++||||+.||++++| ++++|+.+|+.+++ +++.
T Consensus 45 -------~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~p~~~viTNi~~dHld~~~-~~~~~~~~k~~~~~~~~~~g~ 116 (214)
T d1gg4a4 45 -------MTLLRLTPEYDYAVIELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFG-SLAGVAKAKGEIFSGLPENGI 116 (214)
T ss_dssp -------HHHTTCCTTCSEEEEECCCSSSSHHHHHHHHHCCSEEEECCCC---------CHHHHHHHHHGGGGGCCTTCE
T ss_pred -------hhhhhcccccccchhhhhhhhcccccccccccCchheeeehhccccccccc-cHHHHHhhhhhHhhhhccCCc
Confidence 01112456789999999887 44443322237999999999999999999 89999999999984 6678
Q ss_pred EEEccCCCChhHHHHHHHhhhcCCeEEEcCCc---cc--------------ee--ccC--CccccCCCchhHHHHHHHHH
Q psy15432 876 AVTSANQRGPCKQILLETSRALNCVLLEAPSI---LN--------------YR--WRG--QPLDEDWKSTVQSINISLAI 934 (1255)
Q Consensus 876 av~~~~qd~~~~~vl~~~A~~~~~~l~~~~~~---~~--------------~~--~~~--~~v~l~L~G~hq~~Na~lAi 934 (1255)
+|++. +++...+.. ..+. ...++.++.. .+ +. ..+ .++.++++|.||++|+++|+
T Consensus 117 ~v~n~-dd~~~~~~~-~~~~--~~~~~~~~~~~~~ad~~~~~~~~~~~~~~~~i~~~~~~~~~~l~l~G~hn~~NalaAi 192 (214)
T d1gg4a4 117 AIMNA-DNNDWLNWQ-SVIG--SRKVWRFSPNAANSDFTATNIHVTSHGTEFTLQTPTGSVDVLLPLPGRHNIANALAAA 192 (214)
T ss_dssp EEEET-TBCCHHHHH-HHHT--TSEEEEECSSCTTCSBEEEEEEECSSSEEEEEEETTEEEEEEECSSSTHHHHHHHHHH
T ss_pred ccccc-ccHHHHHHH-HHhc--CCceeeeccCCCCcceeeeeEEEeCCceEEEEEECCceEEEEeCCCCHHHHHHHHHHH
Confidence 88887 454444333 3222 2334333211 11 11 111 24668999999999999999
Q ss_pred HHHHH
Q psy15432 935 QLAYL 939 (1255)
Q Consensus 935 ala~~ 939 (1255)
+++..
T Consensus 193 a~~~~ 197 (214)
T d1gg4a4 193 ALSMS 197 (214)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98876
|
| >d1gg4a4 c.72.2.1 (A:99-312) UDP-murNac-tripeptide D-alanyl-D-alanine-adding enzyme MurF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribokinase-like superfamily: MurD-like peptide ligases, catalytic domain family: MurCDEF domain: UDP-murNac-tripeptide D-alanyl-D-alanine-adding enzyme MurF species: Escherichia coli [TaxId: 562]
Probab=99.89 E-value=1.9e-23 Score=219.42 Aligned_cols=171 Identities=15% Similarity=0.133 Sum_probs=110.2
Q ss_pred cEEEEcCCCChhHHHHHHHHHHHHCCCCeEEEcCCcccccceeEEeCCeecChhhhhhHHHHHHHHHHhhhhccCCcchH
Q psy15432 109 NVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTKYFWTVYNALHAKRKHAEDMPAY 188 (1255)
Q Consensus 109 ~vIhVtGTnGKgST~a~l~sIL~~~G~k~Gl~tSPhL~~~rERI~InG~~is~~~ft~~~~~v~~~l~~~~~~~~~~p~~ 188 (1255)
++|+||||||||||++|+++||+++|+++++.++-. .++. .+
T Consensus 3 kvI~VTGTnGKTTt~~mi~~iL~~~g~~~~~~g~~n------------~~~g-----~~--------------------- 44 (214)
T d1gg4a4 3 RVVALTGSSGKTSVKEMTAAILSQCGNTLYTAGNLN------------NDIG-----VP--------------------- 44 (214)
T ss_dssp EEEEEECSSCHHHHHHHHHHHHTTTSCEEECCTTCC------------STTH-----HH---------------------
T ss_pred CEEEEeCCCcHHHHHHHHHHHHHhCCCCEEEeCccc------------Cccc-----cc---------------------
Confidence 699999999999999999999999999988876531 1111 00
Q ss_pred HHHHHHHhhhhhhccCCCEEEEeeccC--Ccccc-ccccCCccEEEEcCCCcchhhhcCCCHHHHHHHHHcccC---CCc
Q psy15432 189 FKFLTVMSFYVFVKEKPDAVIMEVGIG--GRYDN-TNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIMK---PNC 262 (1255)
Q Consensus 189 Fe~Lt~~A~~~F~~~~vD~aVlEvG~G--Gr~D~-tnii~~P~v~vITnIg~DHld~lG~Tle~Ia~~KagI~k---~g~ 262 (1255)
........+.++.++|++.. |..+. +..+ .|++++||||+.||+|+|| ++++|+.+|+.+++ +..
T Consensus 45 -------~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~-~p~~~viTNi~~dHld~~~-~~~~~~~~k~~~~~~~~~~g 115 (214)
T d1gg4a4 45 -------MTLLRLTPEYDYAVIELGANHQGEIAWTVSLT-RPEAALVNNLAAAHLEGFG-SLAGVAKAKGEIFSGLPENG 115 (214)
T ss_dssp -------HHHTTCCTTCSEEEEECCCSSSSHHHHHHHHH-CCSEEEECCCC---------CHHHHHHHHHGGGGGCCTTC
T ss_pred -------hhhhhcccccccchhhhhhhhccccccccccc-Cchheeeehhccccccccc-cHHHHHhhhhhHhhhhccCC
Confidence 01112456789999999887 33333 3333 7999999999999999999 89999999999984 555
Q ss_pred eeeeccCCCchHHHHHHHhhhccCceEEEcCC-ccee--------------ee--cC--cccccCCCchhHHhhHHHHHH
Q psy15432 263 IAVTSANQRGPCKQILLETSRALNCVLLEAPS-ILNY--------------RW--RG--QPLDEDWKSTVQSINISLAIQ 323 (1255)
Q Consensus 263 ~~v~~~~q~~e~~~vl~~~a~~~~~~l~~~~~-~~~~--------------~~--~~--~~i~l~l~G~~q~~Na~lAia 323 (1255)
.+|++. +++...... ..........+.... ..++ .+ .. .++.++++|.||++|+++|++
T Consensus 116 ~~v~n~-dd~~~~~~~-~~~~~~~~~~~~~~~~~ad~~~~~~~~~~~~~~~~i~~~~~~~~~~l~l~G~hn~~NalaAia 193 (214)
T d1gg4a4 116 IAIMNA-DNNDWLNWQ-SVIGSRKVWRFSPNAANSDFTATNIHVTSHGTEFTLQTPTGSVDVLLPLPGRHNIANALAAAA 193 (214)
T ss_dssp EEEEET-TBCCHHHHH-HHHTTSEEEEECSSCTTCSBEEEEEEECSSSEEEEEEETTEEEEEEECSSSTHHHHHHHHHHH
T ss_pred cccccc-ccHHHHHHH-HHhcCCceeeeccCCCCcceeeeeEEEeCCceEEEEEECCceEEEEeCCCCHHHHHHHHHHHH
Confidence 677776 555554433 333222222222221 1111 11 11 146789999999999999999
Q ss_pred HHHHH
Q psy15432 324 LAYLW 328 (1255)
Q Consensus 324 ~a~~~ 328 (1255)
++..+
T Consensus 194 ~~~~l 198 (214)
T d1gg4a4 194 LSMSV 198 (214)
T ss_dssp HHHHT
T ss_pred HHHHc
Confidence 88764
|
| >d1j6ua3 c.72.2.1 (A:89-295) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribokinase-like superfamily: MurD-like peptide ligases, catalytic domain family: MurCDEF domain: UDP-N-acetylmuramate-alanine ligase MurC species: Thermotoga maritima [TaxId: 2336]
Probab=99.89 E-value=2.2e-23 Score=220.01 Aligned_cols=169 Identities=18% Similarity=0.125 Sum_probs=114.7
Q ss_pred CccEEEEcCCCChhHHHHHHHHHHHHCCCCeEEEcCCcccccceeEEeCCeecChhhhhhHHHHHHHHHHhhhhccCCcc
Q psy15432 107 KLNVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTKYFWTVYNALHAKRKHAEDMP 186 (1255)
Q Consensus 107 ~l~vIhVtGTnGKgST~a~l~sIL~~~G~k~Gl~tSPhL~~~rERI~InG~~is~~~ft~~~~~v~~~l~~~~~~~~~~p 186 (1255)
+.++|+||||||||||+.|+++||++.|++++.+...- +.++...
T Consensus 13 ~~~~iAITGTnGKTTt~~~l~~iL~~~g~~~~~~~g~~-----------~~~~~~~------------------------ 57 (207)
T d1j6ua3 13 KKEEFAVTGTDGKTTTTAMVAHVLKHLRKSPTVFLGGI-----------MDSLEHG------------------------ 57 (207)
T ss_dssp CCCEEEEECSSSHHHHHHHHHHHHHHTTCCCEEECSSC-----------CTTSTTS------------------------
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHhCCCCCeEEECCc-----------cccccch------------------------
Confidence 34799999999999999999999999999876653211 1111100
Q ss_pred hHHHHHHHHhhhhhhccCCCEEEEeeccCCccccccccCCccEEEEcCCCcchhhhcCCCHHHHHHHHHcccCCCceeee
Q psy15432 187 AYFKFLTVMSFYVFVKEKPDAVIMEVGIGGRYDNTNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIMKPNCIAVT 266 (1255)
Q Consensus 187 ~~Fe~Lt~~A~~~F~~~~vD~aVlEvG~GGr~D~tnii~~P~v~vITnIg~DHld~lG~Tle~Ia~~KagI~k~g~~~v~ 266 (1255)
....+.+++|+|++...+. ...+ +|+++|||||+.||+|+||+++++|+..|..+++.+..+|.
T Consensus 58 -------------~~~~~~~~~v~e~~e~~~~--~~~~-~p~iaviTNI~~dHLd~~~~~~~~~~~~k~~~~~~~~~~i~ 121 (207)
T d1j6ua3 58 -------------NYEKGNGPVVYELDESEEF--FSEF-SPNYLIITNARGDHLENYGNSLTRYRSAFEKISRNTDLVVT 121 (207)
T ss_dssp -------------SEECCSSCEEEEECTTSGG--GGGC-CCSEEEECCCCCCCGGGGTTCHHHHHHHHHHHHHTCSEEEE
T ss_pred -------------hccCCCcceeEEeeechhh--hhhh-hhceeeeeechhhhhhccCccccccccccchhhhhcccccc
Confidence 1456778899999876422 2333 79999999999999999998999999999999998877777
Q ss_pred ccCCCchHHHHHHHhhh--ccCceEEEc---CCc-ce--eeecC---cccccCCCchhHHhhHHHHHHHHHHH
Q psy15432 267 SANQRGPCKQILLETSR--ALNCVLLEA---PSI-LN--YRWRG---QPLDEDWKSTVQSINISLAIQLAYLW 328 (1255)
Q Consensus 267 ~~~q~~e~~~vl~~~a~--~~~~~l~~~---~~~-~~--~~~~~---~~i~l~l~G~~q~~Na~lAia~a~~~ 328 (1255)
+. |++....+..... ......+.. ... .. +...+ ..++++++|.||++|+++|+++|..+
T Consensus 122 n~--dd~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~hn~~NalaAiava~~l 192 (207)
T d1j6ua3 122 FA--EDELTSHLGDVTFGVKKGTYTLEMRSASRAEQKAMVEKNGKRYLELKLKVPGFHNVLNALAVIALFDSL 192 (207)
T ss_dssp ET--TCTTTGGGCSEEECSSSSSEEEEEEEECSSCEEEEEEETTEEEEEEEESSCSHHHHHHHHHHHHHHHHT
T ss_pred cc--cccccccccccccccccccccccccccccccccccccccCcEEEEEEeCCCcHHHHHHHHHHHHHHHHc
Confidence 65 3433322221110 011100000 000 00 01111 14778999999999999999988765
|
| >d2gc6a1 c.59.1.2 (A:297-425) Folylpolyglutamate synthetase, C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurD-like peptide ligases, peptide-binding domain superfamily: MurD-like peptide ligases, peptide-binding domain family: Folylpolyglutamate synthetase, C-terminal domain domain: Folylpolyglutamate synthetase, C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=99.69 E-value=8.2e-18 Score=164.22 Aligned_cols=71 Identities=20% Similarity=0.358 Sum_probs=56.4
Q ss_pred CCCceEEEEecCcEEEEccCCCHHHHHHHHHHHHhhhhcccccCccCCCCCCCCCccCCCCCccEEEEEecCCCCChhhh
Q psy15432 416 WPGRVQVIRKNNFKYFLDGAHTTDSIELCAKWFLRKSEAEASSSRSVSSCPLDPTQSKSSNVIQRILVFNVTGERDPTKL 495 (1255)
Q Consensus 416 ~pGR~e~v~~~~~~vilDgAHnp~si~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilVfg~~~drD~~~l 495 (1255)
||||||++..+ +.|++||||||+|+++++++++.... .++++|||++++||...+
T Consensus 1 WPGR~e~i~~~-~~iilD~AHN~~~~~~l~~~l~~~~~------------------------~~~~~v~g~~~dKd~~~~ 55 (129)
T d2gc6a1 1 WPARLEKISDT-PLIVIDGAHNPDGINGLITALKQLFS------------------------QPITVIAGILADKDYAAM 55 (129)
T ss_dssp CTTSSEEEETT-TTEEECCCCSHHHHHHHHHHHHHHCS------------------------SCCEEEECCC----CCSS
T ss_pred CCCceEEecCC-CcEEEECCCCHHHHHHHhhccccccc------------------------hhhhhhccccCCccHHHH
Confidence 99999999854 47999999999999999999986532 268999999999999999
Q ss_pred hHHhhccCCCcEEEEcCC
Q psy15432 496 LSPLLQSNQFEYILVTPN 513 (1255)
Q Consensus 496 l~~L~~~~~~d~vi~t~~ 513 (1255)
++.+ ...++.+++++.
T Consensus 56 l~~l--~~~~~~~~~~~~ 71 (129)
T d2gc6a1 56 ADRL--TAAFSTVYLVPV 71 (129)
T ss_dssp SSTT--TTTCSEEEECCC
T ss_pred HHhh--hhhCCeEEEECC
Confidence 9999 456777777653
|
| >d1o5za1 c.59.1.2 (A:294-430) Folylpolyglutamate synthetase, C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurD-like peptide ligases, peptide-binding domain superfamily: MurD-like peptide ligases, peptide-binding domain family: Folylpolyglutamate synthetase, C-terminal domain domain: Folylpolyglutamate synthetase, C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.65 E-value=2.2e-16 Score=156.10 Aligned_cols=128 Identities=25% Similarity=0.341 Sum_probs=99.4
Q ss_pred CceEEEEecCcEEEEccCCCHHHHHHHHHHHHhhhhcccccCccCCCCCCCCCccCCCCCccEEEEEecCCCCChhhhhH
Q psy15432 418 GRVQVIRKNNFKYFLDGAHTTDSIELCAKWFLRKSEAEASSSRSVSSCPLDPTQSKSSNVIQRILVFNVTGERDPTKLLS 497 (1255)
Q Consensus 418 GR~e~v~~~~~~vilDgAHnp~si~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilVfg~~~drD~~~ll~ 497 (1255)
||||++..++..|++||||||+|+++++++++..... .++++|||++++||...++.
T Consensus 1 GR~e~i~~~~~~iilD~AHN~~a~~~l~~~l~~~~~~-----------------------~~~~~i~g~~~dkd~~~~l~ 57 (137)
T d1o5za1 1 GRFEILEKNGKMYILDGAHNPHGAESLVRSLKLYFNG-----------------------EPLSLVIGILDDKNREDILR 57 (137)
T ss_dssp TSSEEEEETTEEEEECCCCSHHHHHHHHHHHHHHCTT-----------------------CCEEEEECCCTTSCHHHHHG
T ss_pred CCcEEEcCCCCEEEEECCCCHHHHHHHHHHHHhhhcc-----------------------ccceeeecccccccHHHHHH
Confidence 8999999877889999999999999999999876543 27999999999999999999
Q ss_pred HhhccCCCcEEEEcCCCCCCCCCCCCcCCCCcccccccccccccCCCCCCCCCCCCCCCCCCCCCcccCCCCCcccCCCC
Q psy15432 498 PLLQSNQFEYILVTPNILTNESSPDTQYGGNRTIDRFGVKLDSRTAAPNGGHEPGRPNVGQGGGGFQSRSGDNSIRSNAN 577 (1255)
Q Consensus 498 ~L~~~~~~d~vi~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 577 (1255)
.+ ...+|.+++|+.+..+..+
T Consensus 58 ~l--~~~~~~i~~~~~~~~r~~~--------------------------------------------------------- 78 (137)
T d1o5za1 58 KY--TGIFERVIVTRVPSPRMKD--------------------------------------------------------- 78 (137)
T ss_dssp GG--TTTCSEEEECCCSSTTCCC---------------------------------------------------------
T ss_pred HH--HhhcceeeeeeccccccCC---------------------------------------------------------
Confidence 99 5568988888643322110
Q ss_pred CCCcccccccccccchhhHHHHHHhhccCCCcEEEcCCHHHHHHHHhccCCCCCceEEEecccccccccceeecc
Q psy15432 578 PLSSVDCHNVNDQSNSFHKIATVASALSQRSKVVEFSSVLDTYNFKYGLDPSKEYHILVTGSLHLVGAFLNVLIT 652 (1255)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~si~~ai~~~~~~~~~~~~~vlvtGSlhLVGgvL~~l~~ 652 (1255)
.+.|++.+....+ .+.+++|+.+|++. .+..||||||+||+|.++.++..
T Consensus 79 ----------------~~~l~~~~~~~~~--~~~~~~~~~~ai~~-------~~~~ilv~GSlylvgev~~~l~~ 128 (137)
T d1o5za1 79 ----------------MNSLVDMAKKFFK--NVEVIEDPLEAIES-------TERATVVTGSLFLVGYVREFLTT 128 (137)
T ss_dssp ----------------HHHHHHHHHHHCS--CCEECSSHHHHHHT-------CCSEEEEESCHHHHHHHHHHHHH
T ss_pred ----------------HHHHHHHHHHhCC--CcEEecCHHHHHhC-------CCCCEEEECCHHHHHHHHHHHHh
Confidence 1224444544433 56789999999863 34579999999999998877644
|
| >d1e8ca2 c.59.1.1 (A:338-497) UDP-N-acetylmuramyl tripeptide synthetase MurE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurD-like peptide ligases, peptide-binding domain superfamily: MurD-like peptide ligases, peptide-binding domain family: MurCDEF C-terminal domain domain: UDP-N-acetylmuramyl tripeptide synthetase MurE species: Escherichia coli [TaxId: 562]
Probab=99.61 E-value=7.1e-16 Score=157.07 Aligned_cols=128 Identities=18% Similarity=0.129 Sum_probs=99.7
Q ss_pred CCCceEEEEe-cCcEEEEccCCCHHHHHHHHHHHHhhhhcccccCccCCCCCCCCCccCCCCCccEEEEEecCCCCChhh
Q psy15432 416 WPGRVQVIRK-NNFKYFLDGAHTTDSIELCAKWFLRKSEAEASSSRSVSSCPLDPTQSKSSNVIQRILVFNVTGERDPTK 494 (1255)
Q Consensus 416 ~pGR~e~v~~-~~~~vilDgAHnp~si~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilVfg~~~drD~~~ 494 (1255)
+|||||++.. +++.||+||||||+|+++++++++.... .++++|||+.++|+..+
T Consensus 1 V~GR~E~i~~~~~p~VIvDyAHNp~ai~~l~~~~k~~~~------------------------~~~~~V~g~~gdr~~~~ 56 (160)
T d1e8ca2 1 VCGRMEVFTAPGKPTVVVDYAHTPDALEKALQAARLHCA------------------------GKLWCVFGCGGDRDKGK 56 (160)
T ss_dssp CTTSSEEECCTTSCEEEEECCCSHHHHHHHHHHHHHTCS------------------------SCEEEEECCCSSSCSTH
T ss_pred CCCCcEEEecCCCCEEEEECCCCHHHHHHHHHHhhhhcc------------------------cccceeeeehhcccchh
Confidence 6999999976 4689999999999999999999976532 27999999999999887
Q ss_pred hhHHhh-ccCCCcEEEEcCCCCCCCCCCCCcCCCCcccccccccccccCCCCCCCCCCCCCCCCCCCCCcccCCCCCccc
Q psy15432 495 LLSPLL-QSNQFEYILVTPNILTNESSPDTQYGGNRTIDRFGVKLDSRTAAPNGGHEPGRPNVGQGGGGFQSRSGDNSIR 573 (1255)
Q Consensus 495 ll~~L~-~~~~~d~vi~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 573 (1255)
+...+- ....+|+||+|.++|+.+.+.
T Consensus 57 ~~~~~~~~~~~~D~vi~t~~~~~~~~~~---------------------------------------------------- 84 (160)
T d1e8ca2 57 RPLMGAIAEEFADVAVVTDDNPRTEEPR---------------------------------------------------- 84 (160)
T ss_dssp HHHHHHHHHHHCSEEEECCSCCBTSCHH----------------------------------------------------
T ss_pred hhhhhccchhccchhhhcccCCccccch----------------------------------------------------
Confidence 544331 245699999999888876641
Q ss_pred CCCCCCCcccccccccccchhhHHHHHHhhccCCCcEEEcCCHHHHHHHHhccCCCCCceEEEecccc
Q psy15432 574 SNANPLSSVDCHNVNDQSNSFHKIATVASALSQRSKVVEFSSVLDTYNFKYGLDPSKEYHILVTGSLH 641 (1255)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~si~~ai~~~~~~~~~~~~~vlvtGSlh 641 (1255)
.++.+.........++.+++|+.+||+.+...+ .+++.|||+|.-|
T Consensus 85 ---------------------~i~~~~~~~~~~~~~v~~i~d~~~Ai~~Al~~a-~~~D~Ili~GkG~ 130 (160)
T d1e8ca2 85 ---------------------AIINDILAGMLDAGHAKVMEGRAEAVTCAVMQA-KENDVVLVAGKGH 130 (160)
T ss_dssp ---------------------HHHHHHHTTSSCGGGSEECSCHHHHHHHHHHHS-CTTCEEEEESCTT
T ss_pred ---------------------hhhhhhccccccccchhhhhhHHHHHHHHHHhC-CCCCEEEEeecCc
Confidence 113333334444457889999999999999988 5788999999866
|
| >d2gc6a1 c.59.1.2 (A:297-425) Folylpolyglutamate synthetase, C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurD-like peptide ligases, peptide-binding domain superfamily: MurD-like peptide ligases, peptide-binding domain family: Folylpolyglutamate synthetase, C-terminal domain domain: Folylpolyglutamate synthetase, C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=99.34 E-value=1.5e-12 Score=126.42 Aligned_cols=115 Identities=15% Similarity=0.126 Sum_probs=76.4
Q ss_pred CCCcEEEEeecCcEEEEEcCcCHHHHHHHHHHHHhhhccccCCCcccCCCCCcEEEEEecCCCCChhhhhhhhhcCCCCc
Q psy15432 1028 WPGRVQVIRKNNFKYFLDGAHTTDSIELCAKWFLRKSEAEANPTQSKSSNVIQRILVFNVTGERDPTKLLSPLLQSNQFE 1107 (1255)
Q Consensus 1028 ~pGR~E~v~~~~~~vilDgAHNP~S~~a~l~~l~~~~~~~~~~~~~~~~~~~~~vlVfg~~~drD~~~ll~~L~~~~~~d 1107 (1255)
||||||++..+ .++++||||||+|+++++++++.... .+.++|||+++|||...+++.+ ...++
T Consensus 1 WPGR~e~i~~~-~~iilD~AHN~~~~~~l~~~l~~~~~-------------~~~~~v~g~~~dKd~~~~l~~l--~~~~~ 64 (129)
T d2gc6a1 1 WPARLEKISDT-PLIVIDGAHNPDGINGLITALKQLFS-------------QPITVIAGILADKDYAAMADRL--TAAFS 64 (129)
T ss_dssp CTTSSEEEETT-TTEEECCCCSHHHHHHHHHHHHHHCS-------------SCCEEEECCC----CCSSSSTT--TTTCS
T ss_pred CCCceEEecCC-CcEEEECCCCHHHHHHHhhccccccc-------------hhhhhhccccCCccHHHHHHhh--hhhCC
Confidence 99999999854 46999999999999999999986532 4679999999999999999999 44567
Q ss_pred EEEEcCCC-CcccccccCCCCCcccccccccccCCHHHHHHHHHHHcCCCceEEeecC
Q psy15432 1108 YILVTPNI-LTNEIRWRGQPLDEDWKSTVQSINISLAIQLAYLWMFRMNKSAELKRNQ 1164 (1255)
Q Consensus 1108 ~vi~t~~~-~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 1164 (1255)
.+++++.. ....... +..-.........+..+.++.+..... +..+|+=||
T Consensus 65 ~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~ai~~a~~~~~-~~~vli~GS 116 (129)
T d2gc6a1 65 TVYLVPVPGTPRALPE-----AGYEALHEGRLKDSWQEALAASLNDVP-DQPIVITGS 116 (129)
T ss_dssp EEEECCCTTSCCCC----------------CBCSCHHHHHHHHHHHCT-TSCEEEESC
T ss_pred eEEEECCCCCcccChH-----HHHHHHHhccccccHHHHHHHHHHhCC-CCcEEEEeh
Confidence 77766532 2222111 111112234555688888888887764 456777776
|
| >d1e8ca2 c.59.1.1 (A:338-497) UDP-N-acetylmuramyl tripeptide synthetase MurE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurD-like peptide ligases, peptide-binding domain superfamily: MurD-like peptide ligases, peptide-binding domain family: MurCDEF C-terminal domain domain: UDP-N-acetylmuramyl tripeptide synthetase MurE species: Escherichia coli [TaxId: 562]
Probab=99.28 E-value=2.2e-12 Score=130.87 Aligned_cols=126 Identities=17% Similarity=0.010 Sum_probs=92.1
Q ss_pred CCCcEEEEeec-CcEEEEEcCcCHHHHHHHHHHHHhhhccccCCCcccCCCCCcEEEEEecCCCCChhhhhhhhh-cCCC
Q psy15432 1028 WPGRVQVIRKN-NFKYFLDGAHTTDSIELCAKWFLRKSEAEANPTQSKSSNVIQRILVFNVTGERDPTKLLSPLL-QSNQ 1105 (1255)
Q Consensus 1028 ~pGR~E~v~~~-~~~vilDgAHNP~S~~a~l~~l~~~~~~~~~~~~~~~~~~~~~vlVfg~~~drD~~~ll~~L~-~~~~ 1105 (1255)
+|||||++... ++++|+||||||+|+++++++++... .+++++|||+.++|+...+...+- ....
T Consensus 1 V~GR~E~i~~~~~p~VIvDyAHNp~ai~~l~~~~k~~~-------------~~~~~~V~g~~gdr~~~~~~~~~~~~~~~ 67 (160)
T d1e8ca2 1 VCGRMEVFTAPGKPTVVVDYAHTPDALEKALQAARLHC-------------AGKLWCVFGCGGDRDKGKRPLMGAIAEEF 67 (160)
T ss_dssp CTTSSEEECCTTSCEEEEECCCSHHHHHHHHHHHHHTC-------------SSCEEEEECCCSSSCSTHHHHHHHHHHHH
T ss_pred CCCCcEEEecCCCCEEEEECCCCHHHHHHHHHHhhhhc-------------ccccceeeeehhcccchhhhhhhccchhc
Confidence 69999999864 67899999999999999999998643 257899999999999886544331 1355
Q ss_pred CcEEEEcCCCCcccccccCCCCCccc--ccccccccCCHHHHHHHHHHHcCCCceEEeecCCC
Q psy15432 1106 FEYILVTPNILTNEIRWRGQPLDEDW--KSTVQSINISLAIQLAYLWMFRMNKSAELKRNQSS 1166 (1255)
Q Consensus 1106 ~d~vi~t~~~~~~~~~~~~~~~~~~~--~~d~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 1166 (1255)
+|.+|+|.+.+..+.+.........- .........+..+.+++++....+++++|+=|...
T Consensus 68 ~D~vi~t~~~~~~~~~~~i~~~~~~~~~~~~~v~~i~d~~~Ai~~Al~~a~~~D~Ili~GkG~ 130 (160)
T d1e8ca2 68 ADVAVVTDDNPRTEEPRAIINDILAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKGH 130 (160)
T ss_dssp CSEEEECCSCCBTSCHHHHHHHHHTTSSCGGGSEECSCHHHHHHHHHHHSCTTCEEEEESCTT
T ss_pred cchhhhcccCCccccchhhhhhhccccccccchhhhhhHHHHHHHHHHhCCCCCEEEEeecCc
Confidence 89999999888765432100000000 01122345789999999999999999999977653
|
| >d1gg4a1 c.59.1.1 (A:313-447) UDP-murNac-tripeptide D-alanyl-D-alanine-adding enzyme MurF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurD-like peptide ligases, peptide-binding domain superfamily: MurD-like peptide ligases, peptide-binding domain family: MurCDEF C-terminal domain domain: UDP-murNac-tripeptide D-alanyl-D-alanine-adding enzyme MurF species: Escherichia coli [TaxId: 562]
Probab=99.16 E-value=1.5e-11 Score=121.30 Aligned_cols=125 Identities=14% Similarity=0.043 Sum_probs=92.6
Q ss_pred CCCcEEEEeec-CcEEEEE-cCcCHHHHHHHHHHHHhhhccccCCCcccCCCCCcEEEEEecCCC--CChhhhhhhhh--
Q psy15432 1028 WPGRVQVIRKN-NFKYFLD-GAHTTDSIELCAKWFLRKSEAEANPTQSKSSNVIQRILVFNVTGE--RDPTKLLSPLL-- 1101 (1255)
Q Consensus 1028 ~pGR~E~v~~~-~~~vilD-gAHNP~S~~a~l~~l~~~~~~~~~~~~~~~~~~~~~vlVfg~~~d--rD~~~ll~~L~-- 1101 (1255)
+|||++.++.. +.++|.| |+.||+||+++++.|.... +++++|+|.|.+ .+...+++.+.
T Consensus 1 vpgR~~~~~~~~g~~iIdDsYNAnP~Sm~aAl~~l~~~~--------------~~ki~vLGdM~ELG~~s~~~H~~l~~~ 66 (135)
T d1gg4a1 1 VPGRLFPIQLAENQLLLDDSYNANVGSMTAAVQVLAEMP--------------GYRVLVVGDMAELGAESEACHVQVGEA 66 (135)
T ss_dssp CTTSSEEEEEETTEEEEECCSCCCHHHHHHHHHHHHHSS--------------SEEEEEECCCCCCTTHHHHHHHHHHHH
T ss_pred CCCCCeEEEcCCCcEEEecCCcCCHHHHHHHHHHhhccC--------------CCceEEEcccccchhhHHHHHHHHHHH
Confidence 69999999975 5555545 8999999999999997642 468999999988 34444555443
Q ss_pred -cCCCCcEEEEcCCCCcccccccCCCCCcccccccccccCCHHHHHHHHHHHcCCC--ceEEeecCCCCCCccccccc
Q psy15432 1102 -QSNQFEYILVTPNILTNEIRWRGQPLDEDWKSTVQSINISLAIQLAYLWMFRMNK--SAELKRNQSSLPMGPHFEID 1176 (1255)
Q Consensus 1102 -~~~~~d~vi~t~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~~~~~ 1176 (1255)
+...+|.++++++......... ....++.+.++.+..+...+.++ .++|+||||++.|+++++.|
T Consensus 67 ~~~~~id~v~~vG~~~~~~~~~~----------~~~~~f~~~~~~~~~l~~~l~~~~~~~ILvKGSr~~~le~iv~~L 134 (135)
T d1gg4a1 67 AKAAGIDRVLSVGKQSHAISTAS----------GVGEHFADKTALITRLKLLIAEQQVITILVKGSRSAAMEEVVRAL 134 (135)
T ss_dssp HHHHTCSEEEEESSSTHHHHHHT----------TSCEEESSHHHHHHHHHHHHHHCSSEEEEEECCGGGTTHHHHHHH
T ss_pred HHhhcCCeEeeechHHHHHHHhc----------CcccccCCHHHHHHHHHHHhhcCCCCEEEEEecccccHHHHHHHh
Confidence 4567999999997654332221 23356778889888876666544 56999999999999988765
|
| >d1o5za1 c.59.1.2 (A:294-430) Folylpolyglutamate synthetase, C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurD-like peptide ligases, peptide-binding domain superfamily: MurD-like peptide ligases, peptide-binding domain family: Folylpolyglutamate synthetase, C-terminal domain domain: Folylpolyglutamate synthetase, C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.09 E-value=1e-10 Score=114.74 Aligned_cols=72 Identities=25% Similarity=0.357 Sum_probs=62.4
Q ss_pred CcEEEEeecCcEEEEEcCcCHHHHHHHHHHHHhhhccccCCCcccCCCCCcEEEEEecCCCCChhhhhhhhhcCCCCcEE
Q psy15432 1030 GRVQVIRKNNFKYFLDGAHTTDSIELCAKWFLRKSEAEANPTQSKSSNVIQRILVFNVTGERDPTKLLSPLLQSNQFEYI 1109 (1255)
Q Consensus 1030 GR~E~v~~~~~~vilDgAHNP~S~~a~l~~l~~~~~~~~~~~~~~~~~~~~~vlVfg~~~drD~~~ll~~L~~~~~~d~v 1109 (1255)
||||++..++..+++||||||+|+++++++++.... ..++++|||+++|||...++..+ ...+|.+
T Consensus 1 GR~e~i~~~~~~iilD~AHN~~a~~~l~~~l~~~~~------------~~~~~~i~g~~~dkd~~~~l~~l--~~~~~~i 66 (137)
T d1o5za1 1 GRFEILEKNGKMYILDGAHNPHGAESLVRSLKLYFN------------GEPLSLVIGILDDKNREDILRKY--TGIFERV 66 (137)
T ss_dssp TSSEEEEETTEEEEECCCCSHHHHHHHHHHHHHHCT------------TCCEEEEECCCTTSCHHHHHGGG--TTTCSEE
T ss_pred CCcEEEcCCCCEEEEECCCCHHHHHHHHHHHHhhhc------------cccceeeecccccccHHHHHHHH--Hhhccee
Confidence 899999988788999999999999999999987542 25789999999999999999999 4568888
Q ss_pred EEcCCC
Q psy15432 1110 LVTPNI 1115 (1255)
Q Consensus 1110 i~t~~~ 1115 (1255)
++|+..
T Consensus 67 ~~~~~~ 72 (137)
T d1o5za1 67 IVTRVP 72 (137)
T ss_dssp EECCCS
T ss_pred eeeecc
Confidence 887653
|
| >d1j6ua2 c.59.1.1 (A:296-446) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurD-like peptide ligases, peptide-binding domain superfamily: MurD-like peptide ligases, peptide-binding domain family: MurCDEF C-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Thermotoga maritima [TaxId: 2336]
Probab=98.93 E-value=1.2e-09 Score=109.06 Aligned_cols=82 Identities=17% Similarity=0.053 Sum_probs=55.1
Q ss_pred CCCceEEEEe---cCcEEEEccCCCHHHHHHHHHHHHhhhhcccccCccCCCCCCCCCccCCCCCccEEEEEecCCCCCh
Q psy15432 416 WPGRVQVIRK---NNFKYFLDGAHTTDSIELCAKWFLRKSEAEASSSRSVSSCPLDPTQSKSSNVIQRILVFNVTGERDP 492 (1255)
Q Consensus 416 ~pGR~e~v~~---~~~~vilDgAHnp~si~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilVfg~~~drD~ 492 (1255)
++||||++.. ++++||+||||||+++++++++++..+++. ++++||++.+.+..
T Consensus 2 v~rR~e~i~~~~~~~~~vidDyAH~P~~i~a~l~a~r~~~~~~-----------------------~ii~vf~p~~~~r~ 58 (151)
T d1j6ua2 2 VHRRFSIAFHDPETNIYVIDDYAHTPDEIRNLLQTAKEVFENE-----------------------KIVVIFQPHRYSRL 58 (151)
T ss_dssp CTTSSEEEEEETTTTEEEEEECCCSHHHHHHHHHHHHHHCSSS-----------------------EEEEEECCBC----
T ss_pred CCCCeEEEEecCCCCEEEEEECCCCHHHHHHHHHHhhhhhccc-----------------------ceeeeeeccccchh
Confidence 5799999853 367899999999999999999998775442 78999988665433
Q ss_pred hhhhHHhh-ccCCCcEEEEcCCCCCCCCC
Q psy15432 493 TKLLSPLL-QSNQFEYILVTPNILTNESS 520 (1255)
Q Consensus 493 ~~ll~~L~-~~~~~d~vi~t~~~~~~~~~ 520 (1255)
..+...+. +-..+|.+|+|+.++..|.+
T Consensus 59 ~~~~~~~~~~~~~aD~vilt~~y~a~E~~ 87 (151)
T d1j6ua2 59 EREDGNFAKALQLADEVVVTEVYDAFEEK 87 (151)
T ss_dssp ----CHHHHHHTTSSEEEECCCBC-----
T ss_pred hHHHHHHHHHhhcccceeeeccccccccc
Confidence 33222221 23579999999998887764
|
| >d1j6ua2 c.59.1.1 (A:296-446) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurD-like peptide ligases, peptide-binding domain superfamily: MurD-like peptide ligases, peptide-binding domain family: MurCDEF C-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Thermotoga maritima [TaxId: 2336]
Probab=98.57 E-value=2.7e-08 Score=99.06 Aligned_cols=82 Identities=16% Similarity=0.018 Sum_probs=53.5
Q ss_pred CCCcEEEEee---cCcEEEEEcCcCHHHHHHHHHHHHhhhccccCCCcccCCCCCcEEEEEecCCCCChhhhhhhhh-cC
Q psy15432 1028 WPGRVQVIRK---NNFKYFLDGAHTTDSIELCAKWFLRKSEAEANPTQSKSSNVIQRILVFNVTGERDPTKLLSPLL-QS 1103 (1255)
Q Consensus 1028 ~pGR~E~v~~---~~~~vilDgAHNP~S~~a~l~~l~~~~~~~~~~~~~~~~~~~~~vlVfg~~~drD~~~ll~~L~-~~ 1103 (1255)
++||||++.. .++++|+||||||+++++++++++...+ .+++++||++.+.+....+...+. +-
T Consensus 2 v~rR~e~i~~~~~~~~~vidDyAH~P~~i~a~l~a~r~~~~------------~~~ii~vf~p~~~~r~~~~~~~~~~~~ 69 (151)
T d1j6ua2 2 VHRRFSIAFHDPETNIYVIDDYAHTPDEIRNLLQTAKEVFE------------NEKIVVIFQPHRYSRLEREDGNFAKAL 69 (151)
T ss_dssp CTTSSEEEEEETTTTEEEEEECCCSHHHHHHHHHHHHHHCS------------SSEEEEEECCBC--------CHHHHHH
T ss_pred CCCCeEEEEecCCCCEEEEEECCCCHHHHHHHHHHhhhhhc------------ccceeeeeeccccchhhHHHHHHHHHh
Confidence 5799999853 3578899999999999999999987642 257889998766543333333332 22
Q ss_pred CCCcEEEEcCCCCccccc
Q psy15432 1104 NQFEYILVTPNILTNEIR 1121 (1255)
Q Consensus 1104 ~~~d~vi~t~~~~~~~~~ 1121 (1255)
..+|.+|+|+.++..+..
T Consensus 70 ~~aD~vilt~~y~a~E~~ 87 (151)
T d1j6ua2 70 QLADEVVVTEVYDAFEEK 87 (151)
T ss_dssp TTSSEEEECCCBC-----
T ss_pred hcccceeeeccccccccc
Confidence 458999999987766543
|
| >d1p3da2 c.59.1.1 (A:322-473) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurD-like peptide ligases, peptide-binding domain superfamily: MurD-like peptide ligases, peptide-binding domain family: MurCDEF C-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Haemophilus influenzae [TaxId: 727]
Probab=98.50 E-value=2.2e-07 Score=91.03 Aligned_cols=39 Identities=10% Similarity=0.012 Sum_probs=33.4
Q ss_pred CCCceEEEEe-----cCcEEEEccCCCHHHHHHHHHHHHhhhhc
Q psy15432 416 WPGRVQVIRK-----NNFKYFLDGAHTTDSIELCAKWFLRKSEA 454 (1255)
Q Consensus 416 ~pGR~e~v~~-----~~~~vilDgAHnp~si~~~l~~l~~~~~~ 454 (1255)
+.+|||++.. ++++||+||||||+++++++++++.....
T Consensus 2 v~RRfe~~ge~~~~~~~~~VidDyAHhPtaI~a~l~a~r~~~~~ 45 (152)
T d1p3da2 2 AGRRFDQLGEFIRPNGKVRLVDDYGHHPTEVGVTIKAAREGWGD 45 (152)
T ss_dssp BTTSSEEEEEEEETTEEEEEEEECCCSHHHHHHHHHHHHHHHCS
T ss_pred CCcceEEeceecccCCCcEEEEeCCCCCHHHHHHHHHhhhhhhh
Confidence 3689999953 57899999999999999999999987643
|
| >d1p3da2 c.59.1.1 (A:322-473) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurD-like peptide ligases, peptide-binding domain superfamily: MurD-like peptide ligases, peptide-binding domain family: MurCDEF C-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Haemophilus influenzae [TaxId: 727]
Probab=98.00 E-value=5e-06 Score=81.00 Aligned_cols=125 Identities=10% Similarity=0.002 Sum_probs=72.5
Q ss_pred CCCcEEEEee-----cCcEEEEEcCcCHHHHHHHHHHHHhhhccccCCCcccCCCCCcEEEEEecCCCCChhhhhhhhh-
Q psy15432 1028 WPGRVQVIRK-----NNFKYFLDGAHTTDSIELCAKWFLRKSEAEANPTQSKSSNVIQRILVFNVTGERDPTKLLSPLL- 1101 (1255)
Q Consensus 1028 ~pGR~E~v~~-----~~~~vilDgAHNP~S~~a~l~~l~~~~~~~~~~~~~~~~~~~~~vlVfg~~~drD~~~ll~~L~- 1101 (1255)
+.+|||++.. ++++||.||||||++++++++.++.... .++.+++|..........+.....
T Consensus 2 v~RRfe~~ge~~~~~~~~~VidDyAHhPtaI~a~l~a~r~~~~------------~~~~~~~~~~~~~~r~~~~~~~~~~ 69 (152)
T d1p3da2 2 AGRRFDQLGEFIRPNGKVRLVDDYGHHPTEVGVTIKAAREGWG------------DKRIVMIFQPHRYSRTRDLFDDFVQ 69 (152)
T ss_dssp BTTSSEEEEEEEETTEEEEEEEECCCSHHHHHHHHHHHHHHHC------------SSCEEEEECCBCHHHHHHTHHHHHH
T ss_pred CCcceEEeceecccCCCcEEEEeCCCCCHHHHHHHHHhhhhhh------------hhhhheeeeccccccccchhhhhHH
Confidence 3689999953 4788999999999999999999988652 234455544322211222222221
Q ss_pred cCCCCcEEEEcCCCCcccccccCCCCCccccc--------ccccccCCHHHHHHHHHHHcCCCceEEeecCCC
Q psy15432 1102 QSNQFEYILVTPNILTNEIRWRGQPLDEDWKS--------TVQSINISLAIQLAYLWMFRMNKSAELKRNQSS 1166 (1255)
Q Consensus 1102 ~~~~~d~vi~t~~~~~~~~~~~~~~~~~~~~~--------d~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 1166 (1255)
.....+.++++........... ..+..+.. ....+..+.++.+..+-....+.+++|.-|.++
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~gDiil~mGaGd 140 (152)
T d1p3da2 70 VLSQVDALIMLDVYAAGEAPIV--GADSKSLCRSIRNLGKVDPILVSDTSQLGDVLDQIIQDGDLILAQGAGS 140 (152)
T ss_dssp HHTTSSEEEEECCBCTTCCCCT--TCSHHHHHHHHHHHTSCCCEEESCGGGHHHHHHHHCCTTCEEEEECSST
T ss_pred Hhhhhhhhhhcccccccccccc--ccchHHHHHHHHhccCccccccCCHHHHHHHHHHhCCCCCEEEEEcCCC
Confidence 1223444444433322221111 11111111 112234578889999999999999999988765
|
| >d2jfga2 c.59.1.1 (A:298-437) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurD-like peptide ligases, peptide-binding domain superfamily: MurD-like peptide ligases, peptide-binding domain family: MurCDEF C-terminal domain domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD species: Escherichia coli [TaxId: 562]
Probab=97.74 E-value=3.1e-05 Score=75.88 Aligned_cols=121 Identities=17% Similarity=0.057 Sum_probs=84.5
Q ss_pred CCCcEEEEee-cCcEEEEEc-CcCHHHHHHHHHHHHhhhccccCCCcccCCCCCcEEEEEe-cCCCCChhhhhhhhhcCC
Q psy15432 1028 WPGRVQVIRK-NNFKYFLDG-AHTTDSIELCAKWFLRKSEAEANPTQSKSSNVIQRILVFN-VTGERDPTKLLSPLLQSN 1104 (1255)
Q Consensus 1028 ~pGR~E~v~~-~~~~vilDg-AHNP~S~~a~l~~l~~~~~~~~~~~~~~~~~~~~~vlVfg-~~~drD~~~ll~~L~~~~ 1104 (1255)
+|+|||.|.. ++++||.|. |.||+|+.++++.+.. ..++++|.| ...+.|...+.+.+ ..
T Consensus 2 LpHR~e~v~~~~gv~fiNDSKaTn~~a~~~Al~~~~~---------------~~~iiLI~GG~~K~~d~~~L~~~i--~~ 64 (140)
T d2jfga2 2 LPHRFEVVLEHNGVRWINDSKATNVGSTEAALNGLHV---------------DGTLHLLLGGDGKSADFSPLARYL--NG 64 (140)
T ss_dssp CTTSSEEEEEETTEEEEECTTCCSHHHHHHHHTTCCC---------------SSCEEEEEESBCTTCCCGGGGGGS--CS
T ss_pred CCcceEEEEEcCCEEEEECCccccHHHHHHHHhhhhc---------------cCceEEEeeccccccchhhhhhhh--hc
Confidence 6999999975 578888895 9999999999876532 145777766 45556777776666 33
Q ss_pred CCcEEEEcCCCCcccccccCCCCCcccccccccccCCHHHHHHHHHHHcCC-CceEEeecCCCCCCccccc
Q psy15432 1105 QFEYILVTPNILTNEIRWRGQPLDEDWKSTVQSINISLAIQLAYLWMFRMN-KSAELKRNQSSLPMGPHFE 1174 (1255)
Q Consensus 1105 ~~d~vi~t~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~ 1174 (1255)
....+++.+.......... ........+.++.+..++....+ +.+.|..++.|.+|.+-|+
T Consensus 65 ~~~~v~~~G~~~~~i~~~~---------~~~~~~~~~l~~av~~a~~~~~~g~~VLlSPa~aSfD~f~nfe 126 (140)
T d2jfga2 65 DNVRLYCFGRDGAQLAALR---------PEVAEQTETMEQAMRLLAPRVQPGDMVLLSPACASLDQFKNFE 126 (140)
T ss_dssp SSEEEEEESTTHHHHHTTS---------GGGEEECSSHHHHHHHHGGGCCTTCEEEECCSSBSTTTSSSHH
T ss_pred cchhhhhhcchhHHHHHHH---------hhhhhhHHHHHHHHHHHHHhcccCCEEEECCCccchhhhhCHH
Confidence 4566777665543332221 22233346888999988887776 4688999999999985443
|
| >d1gg4a1 c.59.1.1 (A:313-447) UDP-murNac-tripeptide D-alanyl-D-alanine-adding enzyme MurF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurD-like peptide ligases, peptide-binding domain superfamily: MurD-like peptide ligases, peptide-binding domain family: MurCDEF C-terminal domain domain: UDP-murNac-tripeptide D-alanyl-D-alanine-adding enzyme MurF species: Escherichia coli [TaxId: 562]
Probab=97.31 E-value=0.00015 Score=70.27 Aligned_cols=72 Identities=17% Similarity=0.135 Sum_probs=54.5
Q ss_pred CCCceEEEEe-cCcEEEEc-cCCCHHHHHHHHHHHHhhhhcccccCccCCCCCCCCCccCCCCCccEEEEEecCCCC---
Q psy15432 416 WPGRVQVIRK-NNFKYFLD-GAHTTDSIELCAKWFLRKSEAEASSSRSVSSCPLDPTQSKSSNVIQRILVFNVTGER--- 490 (1255)
Q Consensus 416 ~pGR~e~v~~-~~~~vilD-gAHnp~si~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilVfg~~~dr--- 490 (1255)
+|||++.++. ++.++|.| |..||+||+++++.|.... .++++|+|.|.+=
T Consensus 1 vpgR~~~~~~~~g~~iIdDsYNAnP~Sm~aAl~~l~~~~-------------------------~~ki~vLGdM~ELG~~ 55 (135)
T d1gg4a1 1 VPGRLFPIQLAENQLLLDDSYNANVGSMTAAVQVLAEMP-------------------------GYRVLVVGDMAELGAE 55 (135)
T ss_dssp CTTSSEEEEEETTEEEEECCSCCCHHHHHHHHHHHHHSS-------------------------SEEEEEECCCCCCTTH
T ss_pred CCCCCeEEEcCCCcEEEecCCcCCHHHHHHHHHHhhccC-------------------------CCceEEEcccccchhh
Confidence 5999999986 46666666 8899999999999997542 1689999998763
Q ss_pred ---ChhhhhHHhhccCCCcEEEEcCC
Q psy15432 491 ---DPTKLLSPLLQSNQFEYILVTPN 513 (1255)
Q Consensus 491 ---D~~~ll~~L~~~~~~d~vi~t~~ 513 (1255)
-+.++.+.+ +...+|.++++.+
T Consensus 56 s~~~H~~l~~~~-~~~~id~v~~vG~ 80 (135)
T d1gg4a1 56 SEACHVQVGEAA-KAAGIDRVLSVGK 80 (135)
T ss_dssp HHHHHHHHHHHH-HHHTCSEEEEESS
T ss_pred HHHHHHHHHHHH-HhhcCCeEeeech
Confidence 244555555 5567999999863
|
| >d2jfga2 c.59.1.1 (A:298-437) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurD-like peptide ligases, peptide-binding domain superfamily: MurD-like peptide ligases, peptide-binding domain family: MurCDEF C-terminal domain domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD species: Escherichia coli [TaxId: 562]
Probab=94.23 E-value=0.028 Score=54.20 Aligned_cols=69 Identities=17% Similarity=0.130 Sum_probs=48.0
Q ss_pred CCCceEEEEe-cCcEEEEcc-CCCHHHHHHHHHHHHhhhhcccccCccCCCCCCCCCccCCCCCccEEEEEecC-CCCCh
Q psy15432 416 WPGRVQVIRK-NNFKYFLDG-AHTTDSIELCAKWFLRKSEAEASSSRSVSSCPLDPTQSKSSNVIQRILVFNVT-GERDP 492 (1255)
Q Consensus 416 ~pGR~e~v~~-~~~~vilDg-AHnp~si~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilVfg~~-~drD~ 492 (1255)
+|+|||.|.. +++.||.|- |.||+|+.++++.+.. . .+++||.|-. .+.|.
T Consensus 2 LpHR~e~v~~~~gv~fiNDSKaTn~~a~~~Al~~~~~---~-----------------------~~iiLI~GG~~K~~d~ 55 (140)
T d2jfga2 2 LPHRFEVVLEHNGVRWINDSKATNVGSTEAALNGLHV---D-----------------------GTLHLLLGGDGKSADF 55 (140)
T ss_dssp CTTSSEEEEEETTEEEEECTTCCSHHHHHHHHTTCCC---S-----------------------SCEEEEEESBCTTCCC
T ss_pred CCcceEEEEEcCCEEEEECCccccHHHHHHHHhhhhc---c-----------------------CceEEEeeccccccch
Confidence 6999999975 678899996 9999999988765431 1 1577887743 34477
Q ss_pred hhhhHHhhccCCCcEEEEcC
Q psy15432 493 TKLLSPLLQSNQFEYILVTP 512 (1255)
Q Consensus 493 ~~ll~~L~~~~~~d~vi~t~ 512 (1255)
..+.+.+ ......+++..
T Consensus 56 ~~L~~~i--~~~~~~v~~~G 73 (140)
T d2jfga2 56 SPLARYL--NGDNVRLYCFG 73 (140)
T ss_dssp GGGGGGS--CSSSEEEEEES
T ss_pred hhhhhhh--hccchhhhhhc
Confidence 7766666 33455666553
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=93.23 E-value=0.05 Score=59.53 Aligned_cols=153 Identities=15% Similarity=0.192 Sum_probs=79.5
Q ss_pred HHHHHHHHhcCcccccccceEEEecCC--CCCccHHHHHHHHHHHCCCCeEEEc----Cccc--ccccceeeeCCeecCh
Q psy15432 702 QVVQYLGHLNITLDDIKKLNVIHISGT--KGKGSTCAYCESILRSHGFSTGFFS----SPHL--IEVRERIKLNGEPISY 773 (1255)
Q Consensus 702 ~~~~~L~~Lg~~~~~~~~l~vIhVTGT--nGKgST~aml~sILr~~G~rtGl~t----SPhL--~~~~ERI~InG~pIs~ 773 (1255)
..+++|.++- |+ -.+..+|+|||. .||||...-+...++..|.|++..+ ||.- .-..+|+|.+......
T Consensus 39 ~~~~ll~~~~-~~--~~~~~~IgitG~pGaGKSTLi~~l~~~~~~~g~~vavlavDpss~~~ggailgdr~rm~~~~~~~ 115 (327)
T d2p67a1 39 LSTQLLDAIM-PY--CGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKTRMNDLARAE 115 (327)
T ss_dssp HHHHHHHHHG-GG--CSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC---------------CTTTTCT
T ss_pred HHHHHHHHhh-hc--cCCceEEEeeCCCCCCHHHHHHHHHHHHHhcCCceeeecCCCceeeeccccccchhHHHHhcccc
Confidence 3556666652 21 135689999999 8999999999999999999998863 2210 0012444443322221
Q ss_pred hhhhhHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHHhhhcCCCCEEEEec-ccC-CccccccccCCCcEEEEcCCCchh
Q psy15432 774 DKFTKYFWTVYNALHAKRKHAEDMPAYFKFLTVMSFYVFVKEKPDAVIMEV-GIG-GRYDNTNIIPNTAVVGITSLGYDH 851 (1255)
Q Consensus 774 ~~f~~~~~~v~~~l~~~~~~~~~~pt~Fe~lT~mAf~~F~~~~vD~aVlEV-G~G-Gr~D~TNvi~~P~VavITnIg~DH 851 (1255)
..|.+.. . ......-..-.|.-+..++...+.|++++|+ |.| .+.+...... .+.++..-
T Consensus 116 ~~~ir~~----------~--~~g~lgg~~~~~~~~~~~~~~~g~d~iliEtvG~gq~e~~i~~~aD--~~l~v~~P---- 177 (327)
T d2p67a1 116 AAFIRPV----------P--SSGHLGGASQRARELMLLCEAAGYDVVIVETVGVGQSETEVARMVD--CFISLQIA---- 177 (327)
T ss_dssp TEEEEEE----------C--C-----CHHHHHHHHHHHHHHTTCSEEEEEEECCTTHHHHHHTTCS--EEEEEECC----
T ss_pred ccccccc----------c--cccccccchhhhhHHHHHHHhcCCCeEEEeeccccccchhhhhccc--eEEEEecC----
Confidence 2211100 0 0000111111222233334567899999997 666 5666666652 23333322
Q ss_pred hhhcCCCHHHHHHHHhccccCCceEEEcc
Q psy15432 852 TAVLGNTIEEITMQKAGIMKPNCIAVTSA 880 (1255)
Q Consensus 852 l~~LG~TleeIA~~KagI~K~g~~av~~~ 880 (1255)
| .-+++-..|+||+.-...+|+|.
T Consensus 178 ----~-~Gd~iq~~k~gi~e~aDi~VvNK 201 (327)
T d2p67a1 178 ----G-GGDDLQGIKKGLMEVADLIVINK 201 (327)
T ss_dssp -----------CCCCHHHHHHCSEEEECC
T ss_pred ----C-CchhhhhhchhhhccccEEEEEe
Confidence 1 23466677899998777788887
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=92.91 E-value=0.14 Score=55.79 Aligned_cols=163 Identities=15% Similarity=0.188 Sum_probs=83.9
Q ss_pred HHHHHHHHhcCcccccccceEEEecCC--CCCccHHHHHHHHHHHCCCCeEEE----cCccc--ccccceeeeCCeecCh
Q psy15432 702 QVVQYLGHLNITLDDIKKLNVIHISGT--KGKGSTCAYCESILRSHGFSTGFF----SSPHL--IEVRERIKLNGEPISY 773 (1255)
Q Consensus 702 ~~~~~L~~Lg~~~~~~~~l~vIhVTGT--nGKgST~aml~sILr~~G~rtGl~----tSPhL--~~~~ERI~InG~pIs~ 773 (1255)
...+++.++-... .+..+|+|||+ .||||+..-+...++..|++++.. +||.- .-...|+|.......+
T Consensus 36 ~~~~~~~~~~~~~---~~~~~igitG~pGaGKSTli~~l~~~~~~~g~~vaViavDpss~~~gg~llgdr~rm~~~~~~~ 112 (323)
T d2qm8a1 36 AVRDLIDAVLPQT---GRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDR 112 (323)
T ss_dssp HHHHHHHHHGGGC---CCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCT
T ss_pred HHHHHHHHhhhcc---CCceEEeeeCCCCCCHHHHHHHHHHHHhhcCCceeeeecccccHHHHhccccchhhHHHHhccc
Confidence 3445555542221 35679999996 678888888888888999999997 34420 0012333333222222
Q ss_pred hhhhhHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHHhhhcCCCCEEEEec-ccC-CccccccccCCCcEEEEcCCCchh
Q psy15432 774 DKFTKYFWTVYNALHAKRKHAEDMPAYFKFLTVMSFYVFVKEKPDAVIMEV-GIG-GRYDNTNIIPNTAVVGITSLGYDH 851 (1255)
Q Consensus 774 ~~f~~~~~~v~~~l~~~~~~~~~~pt~Fe~lT~mAf~~F~~~~vD~aVlEV-G~G-Gr~D~TNvi~~P~VavITnIg~DH 851 (1255)
..|.+.. .......-+.--|--+...+-..++|++++|. |.| .+.+..++.. ...++...+
T Consensus 113 ~~~ir~~------------~~~~~~gg~~~~~~~~i~~~~~~g~d~iiiETVG~gq~e~~~~~~~D--~~v~v~~p~--- 175 (323)
T d2qm8a1 113 NAFIRPS------------PSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETAVADLTD--FFLVLMLPG--- 175 (323)
T ss_dssp TEEEECC------------CCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHHHTTSS--EEEEEECSC---
T ss_pred ceeeccc------------cccccccchhHHHHHHHHhhccCCCCeEEEeehhhhhhhhhhhcccc--eEEEEeecc---
Confidence 1111100 00000111111122222233456899999998 566 5666656542 222333332
Q ss_pred hhhcCCCHHHHHHHHhccccCCceEEEccCCCChhHHHH
Q psy15432 852 TAVLGNTIEEITMQKAGIMKPNCIAVTSANQRGPCKQIL 890 (1255)
Q Consensus 852 l~~LG~TleeIA~~KagI~K~g~~av~~~~qd~~~~~vl 890 (1255)
.| +++-..|+||+.-...+|+|..+.+++.+..
T Consensus 176 ---~G---D~iQ~~k~gilE~aDi~vvNKaD~~~~~~~~ 208 (323)
T d2qm8a1 176 ---AG---DELQGIKKGIFELADMIAVNKADDGDGERRA 208 (323)
T ss_dssp ---C---------CCTTHHHHCSEEEEECCSTTCCHHHH
T ss_pred ---ch---hhhhhhhhhHhhhhheeeEeccccccchHHH
Confidence 24 4666779999998888888883334444443
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=91.87 E-value=0.13 Score=56.19 Aligned_cols=154 Identities=15% Similarity=0.173 Sum_probs=77.2
Q ss_pred HHHHHHHHHhcCCccCCCCccEEEEcCC--CChhHHHHHHHHHHHHCCCCeEEEc----CCcc--cccceeEEeCCeecC
Q psy15432 89 DQVVQYLGHLNITLDDIKKLNVIHISGT--KGKGSTCAYCESILRSHGFSTGFFS----SPHL--IEVRERIKLNGEPIS 160 (1255)
Q Consensus 89 ~~~~~~L~~Lg~~~~~~~~l~vIhVtGT--nGKgST~a~l~sIL~~~G~k~Gl~t----SPhL--~~~rERI~InG~~is 160 (1255)
+..+++|.++-... .+-.+|+|||. -||||...-+...++..|+|++..+ ||.- .-..+|+|.+.....
T Consensus 38 ~~~~~ll~~~~~~~---~~~~~IgitG~pGaGKSTLi~~l~~~~~~~g~~vavlavDpss~~~ggailgdr~rm~~~~~~ 114 (327)
T d2p67a1 38 ALSTQLLDAIMPYC---GNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKTRMNDLARA 114 (327)
T ss_dssp HHHHHHHHHHGGGC---SCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC---------------CTTTTC
T ss_pred HHHHHHHHHhhhcc---CCceEEEeeCCCCCCHHHHHHHHHHHHHhcCCceeeecCCCceeeeccccccchhHHHHhccc
Confidence 34567777763211 35679999999 8999999988899999999998863 2220 011244554432222
Q ss_pred hhhhhhHHHHHHHHHHhhhhccCCcchHHHHHHHHhhhhhhccCCCEEEEee-ccC-CccccccccCCccEEEEcCCCcc
Q psy15432 161 YDKFTKYFWTVYNALHAKRKHAEDMPAYFKFLTVMSFYVFVKEKPDAVIMEV-GIG-GRYDNTNIIPNTAVVGITSLGYD 238 (1255)
Q Consensus 161 ~~~ft~~~~~v~~~l~~~~~~~~~~p~~Fe~Lt~~A~~~F~~~~vD~aVlEv-G~G-Gr~D~tnii~~P~v~vITnIg~D 238 (1255)
...|-+. ... .....-..-.+.-+..++...+.|++++|+ |.| .+.|.....+ .+.++..-
T Consensus 115 ~~~~ir~----------~~~--~g~lgg~~~~~~~~~~~~~~~g~d~iliEtvG~gq~e~~i~~~aD--~~l~v~~P--- 177 (327)
T d2p67a1 115 EAAFIRP----------VPS--SGHLGGASQRARELMLLCEAAGYDVVIVETVGVGQSETEVARMVD--CFISLQIA--- 177 (327)
T ss_dssp TTEEEEE----------ECC-------CHHHHHHHHHHHHHHTTCSEEEEEEECCTTHHHHHHTTCS--EEEEEECC---
T ss_pred ccccccc----------ccc--ccccccchhhhhHHHHHHHhcCCCeEEEeeccccccchhhhhccc--eEEEEecC---
Confidence 2222111 000 000001111112223333667899999998 444 3455555542 23333321
Q ss_pred hhhhcCCCHHHHHHHHHcccCCCceeeecc
Q psy15432 239 HTAVLGNTIEEITMQKAGIMKPNCIAVTSA 268 (1255)
Q Consensus 239 Hld~lG~Tle~Ia~~KagI~k~g~~~v~~~ 268 (1255)
| .-+++-..|+||+.-.-.+|++.
T Consensus 178 -----~-~Gd~iq~~k~gi~e~aDi~VvNK 201 (327)
T d2p67a1 178 -----G-GGDDLQGIKKGLMEVADLIVINK 201 (327)
T ss_dssp ------------CCCCHHHHHHCSEEEECC
T ss_pred -----C-CchhhhhhchhhhccccEEEEEe
Confidence 1 33566667888887665666666
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=91.74 E-value=0.24 Score=53.77 Aligned_cols=162 Identities=14% Similarity=0.136 Sum_probs=81.9
Q ss_pred HHHHHHHHhcCCccCCCCccEEEEcCC--CChhHHHHHHHHHHHHCCCCeEEE----cCCcc--cccceeEEeCCeecCh
Q psy15432 90 QVVQYLGHLNITLDDIKKLNVIHISGT--KGKGSTCAYCESILRSHGFSTGFF----SSPHL--IEVRERIKLNGEPISY 161 (1255)
Q Consensus 90 ~~~~~L~~Lg~~~~~~~~l~vIhVtGT--nGKgST~a~l~sIL~~~G~k~Gl~----tSPhL--~~~rERI~InG~~is~ 161 (1255)
...+++..+-... .+-.+|+|||+ -||||+..-+-..++..|+++|.. +||.- .-...|+|.......+
T Consensus 36 ~~~~~~~~~~~~~---~~~~~igitG~pGaGKSTli~~l~~~~~~~g~~vaViavDpss~~~gg~llgdr~rm~~~~~~~ 112 (323)
T d2qm8a1 36 AVRDLIDAVLPQT---GRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDR 112 (323)
T ss_dssp HHHHHHHHHGGGC---CCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCT
T ss_pred HHHHHHHHhhhcc---CCceEEeeeCCCCCCHHHHHHHHHHHHhhcCCceeeeecccccHHHHhccccchhhHHHHhccc
Confidence 3455555553322 35579999996 689998888888888899999997 34420 0012334333222222
Q ss_pred hhhhhHHHHHHHHHHhhhhccCCcchHHHHHHHHhhhhhhccCCCEEEEeeccC--CccccccccCCccEEEEcCCCcch
Q psy15432 162 DKFTKYFWTVYNALHAKRKHAEDMPAYFKFLTVMSFYVFVKEKPDAVIMEVGIG--GRYDNTNIIPNTAVVGITSLGYDH 239 (1255)
Q Consensus 162 ~~ft~~~~~v~~~l~~~~~~~~~~p~~Fe~Lt~~A~~~F~~~~vD~aVlEvG~G--Gr~D~tnii~~P~v~vITnIg~DH 239 (1255)
..|.+.. . ......-..--+.-+...+.-.++|++++|+.-. .+.+..++.+ ...++...+
T Consensus 113 ~~~ir~~----------~--~~~~~gg~~~~~~~~i~~~~~~g~d~iiiETVG~gq~e~~~~~~~D--~~v~v~~p~--- 175 (323)
T d2qm8a1 113 NAFIRPS----------P--SSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETAVADLTD--FFLVLMLPG--- 175 (323)
T ss_dssp TEEEECC----------C--CCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHHHTTSS--EEEEEECSC---
T ss_pred ceeeccc----------c--ccccccchhHHHHHHHHhhccCCCCeEEEeehhhhhhhhhhhcccc--eEEEEeecc---
Confidence 2222110 0 0011111111122222233557899999998533 3444444432 222222222
Q ss_pred hhhcCCCHHHHHHHHHcccCCCceeeeccCCCchHHHH
Q psy15432 240 TAVLGNTIEEITMQKAGIMKPNCIAVTSANQRGPCKQI 277 (1255)
Q Consensus 240 ld~lG~Tle~Ia~~KagI~k~g~~~v~~~~q~~e~~~v 277 (1255)
.| +++-..|+|||.-.-.+|++..+.+++.+.
T Consensus 176 ---~G---D~iQ~~k~gilE~aDi~vvNKaD~~~~~~~ 207 (323)
T d2qm8a1 176 ---AG---DELQGIKKGIFELADMIAVNKADDGDGERR 207 (323)
T ss_dssp ---C---------CCTTHHHHCSEEEEECCSTTCCHHH
T ss_pred ---ch---hhhhhhhhhHhhhhheeeEeccccccchHH
Confidence 13 567778999998777777777333444443
|
| >d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Dethiobiotin synthetase species: Escherichia coli [TaxId: 562]
Probab=91.21 E-value=0.072 Score=52.93 Aligned_cols=33 Identities=18% Similarity=0.308 Sum_probs=29.6
Q ss_pred cEEEEcCCC---ChhHHHHHHHHHHHHCCCCeEEEc
Q psy15432 109 NVIHISGTK---GKGSTCAYCESILRSHGFSTGFFS 141 (1255)
Q Consensus 109 ~vIhVtGTn---GKgST~a~l~sIL~~~G~k~Gl~t 141 (1255)
|-+-||||. ||||||.-|+..|.+.|+||.++-
T Consensus 2 ~~~~i~gt~~GVGKTtvs~~La~aLa~~G~rVl~id 37 (224)
T d1byia_ 2 KRYFVTGTDTEVGKTVASCALLQAAKAAGYRTAGYK 37 (224)
T ss_dssp EEEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred ceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEEC
Confidence 456788887 999999999999999999999984
|
| >d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Dethiobiotin synthetase species: Escherichia coli [TaxId: 562]
Probab=90.36 E-value=0.073 Score=52.90 Aligned_cols=33 Identities=18% Similarity=0.308 Sum_probs=29.6
Q ss_pred eEEEecCCC---CCccHHHHHHHHHHHCCCCeEEEc
Q psy15432 721 NVIHISGTK---GKGSTCAYCESILRSHGFSTGFFS 753 (1255)
Q Consensus 721 ~vIhVTGTn---GKgST~aml~sILr~~G~rtGl~t 753 (1255)
|-+-||||. ||||||.-|+..|.+.|+||.++-
T Consensus 2 ~~~~i~gt~~GVGKTtvs~~La~aLa~~G~rVl~id 37 (224)
T d1byia_ 2 KRYFVTGTDTEVGKTVASCALLQAAKAAGYRTAGYK 37 (224)
T ss_dssp EEEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred ceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEEC
Confidence 456788887 999999999999999999999984
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=80.36 E-value=0.79 Score=43.73 Aligned_cols=35 Identities=23% Similarity=0.326 Sum_probs=30.2
Q ss_pred ccEEEEcCCC--ChhHHHHHHHHHHHHCCCCeEEEcC
Q psy15432 108 LNVIHISGTK--GKGSTCAYCESILRSHGFSTGFFSS 142 (1255)
Q Consensus 108 l~vIhVtGTn--GKgST~a~l~sIL~~~G~k~Gl~tS 142 (1255)
+++|+|+|.+ ||||+..-+..-|+..|++++.+-.
T Consensus 1 Mkii~I~G~~gSGKTTli~~l~~~L~~~g~~v~vik~ 37 (165)
T d1xjca_ 1 MNVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKH 37 (165)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHhCCCeEEEEEe
Confidence 4799999976 7999888888899999999999853
|