Psyllid ID: psy15438

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------36
MRDVDLTDNLPKEFLGTKHAEYIKKYSDNKEDYEYCMSEYLRMSGMYWGITTLSLLDQLDDMPQDTIFDFITQCIHPCGGVSASISHDPHILYTLSAVQIACLINREHELPVDKIVAYVSKLQQPDGSFFGDMYGEVDTRFSFCAVACLSLLGKLDAINLSKAVEFILSCCNFDGGFGSRPGSESHAGLTYCCVGFLSITGHLHEIDADKLAWWLAERQLPSGGLNGRPEKLPDVCYSWWVLASLHMLGRGTWINSAALRKFILASQVRNTFYFEMGVFSDKIPVCGVHYVDYCTQVRNRIEQGCSVRTCISDRPLDIPDPFHTLFGVAALTMLDPPTPDVLPVDPTYCMPVRTFHSE
cccccccccccccccHHHHHHHHHHHHccccccccHHccccHHHHHHHHHHHHHHccccccccHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHccccHHcHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHcccccccHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHcccccccHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHcccccccccccccccccccHHHccc
cccccccccccccccHHHHHHHHHHccccccccHHHHcHHHHHHHHHHHHHHHHHcccHHHccHHHHHHHHHHcEcccccEEccccccEcHHHHHHHHHHHHHcccHHHccHHHHHHHHHHcEcccccEEccccccEcHHHHHHHHHHHHHHccHHHccHHHHHHHHHHcEcccccEcccccccccHHHHHHHHHHHHHcccHHHccHHHHHHHHHccEcccccEcccccccccHHHHHHHHHHHHHHccHHHccHHHHHHHHHccEccccccHHHccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccEccEHHHHHHHHHHHHHcccccccccccccEEEccHHHHccc
mrdvdltdnlpkeflgtKHAEYIKKYSDNKEDYEYCMSEYLRMSGMYWGITTLSlldqlddmpqdtIFDFITQcihpcggvsasishdphILYTLSAVQIACLInrehelpvDKIVAYVSKlqqpdgsffgdmygevdtRFSFCAVACLSLLGKLDAINLSKAVEFILSCCnfdggfgsrpgseshagltYCCVGFLSITGHLHEIDADKLAWWLAErqlpsgglngrpeklpdvCYSWWVLASLHMLGRGTWINSAALRKFILASQVRNTFYFEmgvfsdkipvcgvHYVDYCTQVRNRIeqgcsvrtcisdrpldipdpfhtLFGVAaltmldpptpdvlpvdptycmpvrtfhse
mrdvdltdnlpkeflgtkhaeyikkysdnkedYEYCMSEYLRMSGMYWGITTLSLLDQLDDMPQDTIFDFITQCIHPCGGVSASISHDPHILYTLSAVQIACLINREHELPVDKIVAYVSKLQQPDGSFFGDMYGEVDTRFSFCAVACLSLLGKLDAINLSKAVEFILSCCNFDGGFGSRPGSESHAGLTYCCVGFLSITGHLHEIDADKLAWWLAERQLpsgglngrpekLPDVCYSWWVLASLHMLGRGTWINSAALRKFILASQVRNTFYFEMGVFSDKIPVCGVHYVDYCTQVRNRIEQGCSVRTCISDRPLDIPDPFHTLFGVAALTMLDPPTPDVLPVDPTYCMPVRTFHSE
MRDVDLTDNLPKEFLGTKHAEYIKKYSDNKEDYEYCMSEYLRMSGMYWGITTLSLLDQLDDMPQDTIFDFITQCIHPCGGVSASISHDPHILYTLSAVQIACLINREHELPVDKIVAYVSKLQQPDGSFFGDMYGEVDTRFSFCAVACLSLLGKLDAINLSKAVEFILSCCNFDGGFGSRPGSESHAGLTYCCVGFLSITGHLHEIDADKLAWWLAERQLPSGGLNGRPEKLPDVCYSWWVLASLHMLGRGTWINSAALRKFILASQVRNTFYFEMGVFSDKIPVCGVHYVDYCTQVRNRIEQGCSVRTCISDRPLDIPDPFHTLFGVAAltmldpptpdvlpvdptYCMPVRTFHSE
*************FLGTKHAEYIKKYSDNKEDYEYCMSEYLRMSGMYWGITTLSLLDQLDDMPQDTIFDFITQCIHPCGGVSASISHDPHILYTLSAVQIACLINREHELPVDKIVAYVSKLQQPDGSFFGDMYGEVDTRFSFCAVACLSLLGKLDAINLSKAVEFILSCCNFDGGFGSRPGSESHAGLTYCCVGFLSITGHLHEIDADKLAWWLAERQLPSGGLNGRPEKLPDVCYSWWVLASLHMLGRGTWINSAALRKFILASQVRNTFYFEMGVFSDKIPVCGVHYVDYCTQVRNRIEQGCSVRTCISDRPLDIPDPFHTLFGVAALTMLDPPTPDVLPVDPTYCMPVR*****
*********LPKEFLGTKHAEYIKKYSDNKEDYEYCMSEYLRMSGMYWGITTLSLLDQLDDMPQDTIFDFITQCIHPCGGVSASISHDPHILYTLSAVQIACLINREHELPVDKIVAYVSKLQQPDGSFFGDMYGEVDTRFSFCAVACLSLLGKLDAINLSKAVEFILSCCNFDGGFGSRPGSESHAGLTYCCVGFLSITGHLHEIDADKLAWWLAERQLPSGGLNGRPEKLPDVCYSWWVLASLHMLGRGTWINSAALRKFILASQVRNTFYFEMGVFSDKIPVCGVHYVDYCTQVRNRIEQGCSVRTCISDRPLDIPDPFHTLFGVAALTMLDPPTPDVLPVDPTYCMPVRT****
MRDVDLTDNLPKEFLGTKHAEYIKKYSDNKEDYEYCMSEYLRMSGMYWGITTLSLLDQLDDMPQDTIFDFITQCIHPCGGVSASISHDPHILYTLSAVQIACLINREHELPVDKIVAYVSKLQQPDGSFFGDMYGEVDTRFSFCAVACLSLLGKLDAINLSKAVEFILSCCNFDGGFGSRPGSESHAGLTYCCVGFLSITGHLHEIDADKLAWWLAERQLPSGGLNGRPEKLPDVCYSWWVLASLHMLGRGTWINSAALRKFILASQVRNTFYFEMGVFSDKIPVCGVHYVDYCTQVRNRIEQGCSVRTCISDRPLDIPDPFHTLFGVAALTMLDPPTPDVLPVDPTYCMPVRTFHSE
*RDVDLTDNLPKEFLGTKHAEYIKKYSDNKEDYEYCMSEYLRMSGMYWGITTLSLLDQLDDMPQDTIFDFITQCIHPCGGVSASISHDPHILYTLSAVQIACLINREHELPVDKIVAYVSKLQQPDGSFFGDMYGEVDTRFSFCAVACLSLLGKLDAINLSKAVEFILSCCNFDGGFGSRPGSESHAGLTYCCVGFLSITGHLHEIDADKLAWWLAERQLPSGGLNGRPEKLPDVCYSWWVLASLHMLGRGTWINSAALRKFILASQVRNTFYFEMGVFSDKIPVCGVHYVDYCTQVRNRIEQGCSVRTCISDRPLDIPDPFHTLFGVAALTMLDPPTPDVLPVDPTYCMPVRTFHSE
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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ooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MRDVDLTDNLPKEFLGTKHAEYIKKYSDNKEDYEYCMSEYLRMSGMYWGITTLSLLDQLDDMPQDTIFDFITQCIHPCGGVSASISHDPHILYTLSAVQIACLINREHELPVDKIVAYVSKLQQPDGSFFGDMYGEVDTRFSFCAVACLSLLGKLDAINLSKAVEFILSCCNFDGGFGSRPGSESHAGLTYCCVGFLSITGHLHEIDADKLAWWLAERQLPSGGLNGRPEKLPDVCYSWWVLASLHMLGRGTWINSAALRKFILASQVRNTFYFEMGVFSDKIPVCGVHYVDYCTQVRNRIEQGCSVRTCISDRPLDIPDPFHTLFGVAALTMLDPPTPDVLPVDPTYCMPVRTFHSE
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query358 2.2.26 [Sep-21-2011]
Q08603331 Geranylgeranyl transferas yes N/A 0.868 0.939 0.568 1e-112
P53612339 Geranylgeranyl transferas yes N/A 0.868 0.917 0.565 1e-112
P53611331 Geranylgeranyl transferas yes N/A 0.882 0.954 0.549 1e-110
Q5E9B3331 Geranylgeranyl transferas yes N/A 0.868 0.939 0.554 1e-110
P41992335 Probable geranylgeranyl t yes N/A 0.874 0.934 0.465 2e-85
B0G172339 Probable geranylgeranyl t yes N/A 0.879 0.929 0.435 3e-82
P20133325 Geranylgeranyl transferas yes N/A 0.835 0.92 0.405 2e-67
O93830341 Geranylgeranyl transferas N/A N/A 0.860 0.903 0.402 2e-66
P46960311 Geranylgeranyl transferas yes N/A 0.843 0.971 0.351 2e-63
Q04903419 Protein farnesyltransfera N/A N/A 0.569 0.486 0.326 1e-29
>sp|Q08603|PGTB2_RAT Geranylgeranyl transferase type-2 subunit beta OS=Rattus norvegicus GN=Rabggtb PE=1 SV=1 Back     alignment and function desciption
 Score =  405 bits (1042), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 199/350 (56%), Positives = 237/350 (67%), Gaps = 39/350 (11%)

Query: 2   RDVDLTDNLPKEFLGTKHAEYIKKYSDNKEDYEYCMSEYLRMSGMYWGITTLSLLDQLDD 61
           +DV +  + P   L  KHA+YI  Y   K+DYEYCMSEYLRMSG+YWG+T + L+ QL  
Sbjct: 6   KDVTIKSDAPDTLLLEKHADYIASYGSKKDDYEYCMSEYLRMSGVYWGLTVMDLMGQLHR 65

Query: 62  MPQDTIFDFITQCIHPCGGVSASISHDPHILYTLSAVQIACLINREHELPVDKIVAYVSK 121
           M ++ I  FI  C H CGGVSASI HDPH+LYTLSAVQI  L +  H + VDK+VAYV  
Sbjct: 66  MNKEEILVFIKSCQHECGGVSASIGHDPHLLYTLSAVQILTLYDSIHVINVDKVVAYVQS 125

Query: 122 LQQPDGSFFGDMYGEVDTRFSFCAVACLSLLGKLDAINLSKAVEFILSCCNFDGGFGSRP 181
           LQ+ DGSF GD++GE+DTRFSFCAVA L+LLGKLDAIN+ KA+EF+LSC NFDGGFG RP
Sbjct: 126 LQKEDGSFAGDIWGEIDTRFSFCAVATLALLGKLDAINVEKAIEFVLSCMNFDGGFGCRP 185

Query: 182 GSESHAGLTYCCVGFLSITGHLHEIDADKLAWWLAERQLPSGGLNGRPEKLPDVCYSWWV 241
           GSESHAG  YCC GFL+IT  LH++++D L WWL ERQLPSGGLNGRPEKLPDVCYSWWV
Sbjct: 186 GSESHAGQIYCCTGFLAITSQLHQVNSDLLGWWLCERQLPSGGLNGRPEKLPDVCYSWWV 245

Query: 242 LASLHMLGRGTWINSAALRKFILASQVRNTFYFEMGVFSDKIPVCGVHYVDYCTQVRNRI 301
           LASL ++GR  WI+   LR FILA Q   T  F                           
Sbjct: 246 LASLKIIGRLHWIDREKLRSFILACQDEETGGF--------------------------- 278

Query: 302 EQGCSVRTCISDRPLDIPDPFHTLFGVAALTMLDPPTPDVLPVDPTYCMP 351
                     +DRP D+ DPFHTLFG+A L++L      + PV P +CMP
Sbjct: 279 ----------ADRPGDMVDPFHTLFGIAGLSLLGE--EQIKPVSPVFCMP 316
Catalyzes the transfer of a geranyl-geranyl moiety from geranyl-geranyl pyrophosphate to both cysteines in Rab proteins with an -XXCC, -XCXC and -CCXX C-terminal, such as RAB1A, RAB3A and RAB5A respectively.
Rattus norvegicus (taxid: 10116)
EC: 2EC: .EC: 5EC: .EC: 1EC: .EC: 6EC: 0
>sp|P53612|PGTB2_MOUSE Geranylgeranyl transferase type-2 subunit beta OS=Mus musculus GN=Rabggtb PE=1 SV=2 Back     alignment and function description
>sp|P53611|PGTB2_HUMAN Geranylgeranyl transferase type-2 subunit beta OS=Homo sapiens GN=RABGGTB PE=1 SV=2 Back     alignment and function description
>sp|Q5E9B3|PGTB2_BOVIN Geranylgeranyl transferase type-2 subunit beta OS=Bos taurus GN=RABGGTB PE=2 SV=1 Back     alignment and function description
>sp|P41992|GGTB2_CAEEL Probable geranylgeranyl transferase type-2 subunit beta OS=Caenorhabditis elegans GN=ggtb-1 PE=3 SV=2 Back     alignment and function description
>sp|B0G172|PGTB2_DICDI Probable geranylgeranyl transferase type-2 subunit beta OS=Dictyostelium discoideum GN=rabggtb PE=3 SV=1 Back     alignment and function description
>sp|P20133|PGTB2_YEAST Geranylgeranyl transferase type-2 subunit beta OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=BET2 PE=1 SV=3 Back     alignment and function description
>sp|O93830|PGTB2_CANAX Geranylgeranyl transferase type-2 subunit beta OS=Candida albicans GN=BET2 PE=3 SV=1 Back     alignment and function description
>sp|P46960|PGTB2_SCHPO Geranylgeranyl transferase type-2 subunit beta OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ptb1 PE=3 SV=1 Back     alignment and function description
>sp|Q04903|FNTB_PEA Protein farnesyltransferase subunit beta OS=Pisum sativum GN=FTB PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query358
354468090339 PREDICTED: geranylgeranyl transferase ty 0.868 0.917 0.568 1e-111
38051886343 Rabggtb protein [Rattus norvegicus] 0.868 0.906 0.568 1e-111
332639786330 Chain B, Crystal Structure Of Rabggtase( 0.868 0.942 0.568 1e-110
20177500331 geranylgeranyl transferase type-2 subuni 0.868 0.939 0.568 1e-110
51261120331 Rab geranylgeranyltransferase, beta subu 0.868 0.939 0.568 1e-110
254553293331 geranylgeranyl transferase type-2 subuni 0.868 0.939 0.565 1e-110
254553291339 geranylgeranyl transferase type-2 subuni 0.868 0.917 0.565 1e-110
213512843331 Geranylgeranyl transferase type-2 subuni 0.871 0.942 0.575 1e-110
348522068338 PREDICTED: geranylgeranyl transferase ty 0.871 0.923 0.572 1e-110
395821900331 PREDICTED: geranylgeranyl transferase ty 0.868 0.939 0.56 1e-109
>gi|354468090|ref|XP_003496500.1| PREDICTED: geranylgeranyl transferase type-2 subunit beta [Cricetulus griseus] Back     alignment and taxonomy information
 Score =  407 bits (1047), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 199/350 (56%), Positives = 238/350 (68%), Gaps = 39/350 (11%)

Query: 2   RDVDLTDNLPKEFLGTKHAEYIKKYSDNKEDYEYCMSEYLRMSGMYWGITTLSLLDQLDD 61
           +DV +  + P   L  KHA+YI  Y   K+DYEYCMSEYLRMSG+YWG+T + L+ QLD 
Sbjct: 14  KDVTIKSDAPDTLLLEKHADYIASYGSKKDDYEYCMSEYLRMSGIYWGLTVMDLMGQLDR 73

Query: 62  MPQDTIFDFITQCIHPCGGVSASISHDPHILYTLSAVQIACLINREHELPVDKIVAYVSK 121
           M ++ I  FI  C H CGG+SASI HDPH+LYTLSAVQI  L +  H + VDK+VAYV  
Sbjct: 74  MNREEILVFIKSCQHECGGISASIGHDPHLLYTLSAVQILTLYDSVHAIDVDKVVAYVQS 133

Query: 122 LQQPDGSFFGDMYGEVDTRFSFCAVACLSLLGKLDAINLSKAVEFILSCCNFDGGFGSRP 181
           LQ+ DGSF GD++GE+DTRFSFCAVA L+LLGKLDAIN+ KA+EF+LSC NFDGGFG RP
Sbjct: 134 LQKEDGSFAGDIWGEIDTRFSFCAVATLALLGKLDAINVEKAIEFVLSCMNFDGGFGCRP 193

Query: 182 GSESHAGLTYCCVGFLSITGHLHEIDADKLAWWLAERQLPSGGLNGRPEKLPDVCYSWWV 241
           GSESHAG  YCC GFL+IT  LH++++D L WWL ERQLPSGGLNGRPEKLPDVCYSWWV
Sbjct: 194 GSESHAGQIYCCTGFLAITSQLHQVNSDLLGWWLCERQLPSGGLNGRPEKLPDVCYSWWV 253

Query: 242 LASLHMLGRGTWINSAALRKFILASQVRNTFYFEMGVFSDKIPVCGVHYVDYCTQVRNRI 301
           LASL ++GR  WI+   LR FILA Q   T  F                           
Sbjct: 254 LASLKIIGRLHWIDREKLRSFILACQDEETGGF--------------------------- 286

Query: 302 EQGCSVRTCISDRPLDIPDPFHTLFGVAALTMLDPPTPDVLPVDPTYCMP 351
                     +DRP D+ DPFHTLFG+A L++L      + PV P +CMP
Sbjct: 287 ----------ADRPGDMVDPFHTLFGIAGLSLLG--EEQIKPVSPVFCMP 324

Source: Cricetulus griseus

Species: Cricetulus griseus

Genus: Cricetulus

Family: Cricetidae

Order: Rodentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota
>gi|38051886|gb|AAH60536.1| Rabggtb protein [Rattus norvegicus] Back     alignment and taxonomy information
>gi|332639786|pdb|3PZ1|B Chain B, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig) In Complex With Bms3 gi|332639788|pdb|3PZ2|B Chain B, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig) In Complex With Bms3 And Lipid Substrate Ggpp gi|332639790|pdb|3PZ3|B Chain B, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig) In Complex With Bms-Analogue 14 gi|388604326|pdb|4EHM|B Chain B, Rabggtase In Complex With Covalently Bound Psoromic Acid gi|409974042|pdb|4GTS|B Chain B, Engineered Rabggtase In Complex With Bms Analogue 16 gi|409974044|pdb|4GTT|B Chain B, Engineered Rabggtase In Complex With Bms Analogue 12 gi|409974046|pdb|4GTV|B Chain B, Engineered Rabggtase In Complex With Bms Analogue 13 Back     alignment and taxonomy information
>gi|20177500|ref|NP_619715.1| geranylgeranyl transferase type-2 subunit beta [Rattus norvegicus] gi|730317|sp|Q08603.1|PGTB2_RAT RecName: Full=Geranylgeranyl transferase type-2 subunit beta; AltName: Full=Geranylgeranyl transferase type II subunit beta; Short=GGTase-II-beta; AltName: Full=Rab geranyl-geranyltransferase subunit beta; Short=Rab GG transferase beta; Short=Rab GGTase beta; AltName: Full=Rab geranylgeranyltransferase subunit beta; AltName: Full=Type II protein geranyl-geranyltransferase subunit beta gi|7546396|pdb|1DCE|B Chain B, Crystal Structure Of Rab Geranylgeranyltransferase From Rat Brain gi|7546398|pdb|1DCE|D Chain D, Crystal Structure Of Rab Geranylgeranyltransferase From Rat Brain gi|31615537|pdb|1LTX|B Chain B, Structure Of Rab Escort Protein-1 In Complex With Rab Geranylgeranyl Transferase And Isoprenoid gi|194368683|pdb|3C72|B Chain B, Engineered Rabggtase In Complex With A Peptidomimetic Inhibitor gi|198443302|pdb|3DSS|B Chain B, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig) gi|198443304|pdb|3DST|B Chain B, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig)in Complex With Geranylgeranyl Pyrophosphate gi|198443306|pdb|3DSU|B Chain B, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig)in Complex With Farnesyl Pyrophosphate gi|198443308|pdb|3DSV|B Chain B, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig)in Complex With Mono-Prenylated Peptide Ser-Cys-Ser-Cys(Gg) Derivated From Rab7 gi|198443310|pdb|3DSW|B Chain B, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig)in Complex With Mono-Prenylated Peptide Ser-Cys(Gg)-Ser-Cys Derivated From Rab7 gi|198443312|pdb|3DSX|B Chain B, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig)in Complex With Di-Prenylated Peptide Ser-Cys(Gg)-Ser-Cys(Gg) Derivated From Rab7 gi|257471935|pdb|3HXB|B Chain B, Engineered Rabggtase In Complex With A Peptidomimetic Inhibitor (Compound 6) gi|257471937|pdb|3HXC|B Chain B, Engineered Rabggtase In Complex With A Peptidomimetic Inhibitor (compound 8) gi|257471939|pdb|3HXD|B Chain B, Engineered Rabggtase In Complex With A Peptidomimetic Inhibitor (Compound 9) gi|257471941|pdb|3HXE|B Chain B, Engineered Rabggtase In Complex With A Peptidomimetic Inhibitor (compound 37) gi|257471943|pdb|3HXF|B Chain B, Engineered Rabggtase In Complex With A Peptidomimetic Inhibitor (compound 32) gi|310208|gb|AAA41999.1| rab geranylgeranyl transferase beta subunit [Rattus norvegicus] gi|385477|gb|AAB27019.1| Rab geranylgeranyl transferase component B beta subunit [Rattus sp.] Back     alignment and taxonomy information
>gi|51261120|gb|AAH78683.1| Rab geranylgeranyltransferase, beta subunit [Rattus norvegicus] gi|149026283|gb|EDL82526.1| RAB geranylgeranyl transferase, b subunit, isoform CRA_c [Rattus norvegicus] Back     alignment and taxonomy information
>gi|254553293|ref|NP_001156950.1| geranylgeranyl transferase type-2 subunit beta isoform 2 [Mus musculus] gi|74227618|dbj|BAE35665.1| unnamed protein product [Mus musculus] gi|148679950|gb|EDL11897.1| RAB geranylgeranyl transferase, b subunit, isoform CRA_a [Mus musculus] Back     alignment and taxonomy information
>gi|254553291|ref|NP_035361.2| geranylgeranyl transferase type-2 subunit beta isoform 1 [Mus musculus] gi|341941249|sp|P53612.2|PGTB2_MOUSE RecName: Full=Geranylgeranyl transferase type-2 subunit beta; AltName: Full=Geranylgeranyl transferase type II subunit beta; Short=GGTase-II-beta; AltName: Full=Rab geranyl-geranyltransferase subunit beta; Short=Rab GG transferase beta; Short=Rab GGTase beta; AltName: Full=Rab geranylgeranyltransferase subunit beta; AltName: Full=Type II protein geranyl-geranyltransferase subunit beta gi|124376078|gb|AAI32474.1| RAB geranylgeranyl transferase, b subunit [Mus musculus] gi|148679955|gb|EDL11902.1| RAB geranylgeranyl transferase, b subunit, isoform CRA_e [Mus musculus] gi|187951089|gb|AAI38548.1| RAB geranylgeranyl transferase, b subunit [Mus musculus] Back     alignment and taxonomy information
>gi|213512843|ref|NP_001133643.1| Geranylgeranyl transferase type-2 subunit beta [Salmo salar] gi|209154788|gb|ACI33626.1| Geranylgeranyl transferase type-2 subunit beta [Salmo salar] Back     alignment and taxonomy information
>gi|348522068|ref|XP_003448548.1| PREDICTED: geranylgeranyl transferase type-2 subunit beta-like [Oreochromis niloticus] Back     alignment and taxonomy information
>gi|395821900|ref|XP_003784268.1| PREDICTED: geranylgeranyl transferase type-2 subunit beta [Otolemur garnettii] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query358
RGD|3530331 Rabggtb "Rab geranylgeranyltra 0.770 0.833 0.640 4.5e-98
UNIPROTKB|F1LSM6331 Rabggtb "Geranylgeranyl transf 0.770 0.833 0.640 4.5e-98
MGI|MGI:99537339 Rabggtb "RAB geranylgeranyl tr 0.770 0.814 0.637 4.5e-98
ZFIN|ZDB-GENE-040426-2116331 rabggtb "Rab geranylgeranyltra 0.773 0.836 0.624 5.2e-97
UNIPROTKB|F1P6X0331 RABGGTB "Uncharacterized prote 0.770 0.833 0.626 2.9e-96
UNIPROTKB|G8JKY6331 RABGGTB "Geranylgeranyl transf 0.770 0.833 0.622 3.7e-96
UNIPROTKB|Q5E9B3331 RABGGTB "Geranylgeranyl transf 0.770 0.833 0.622 3.7e-96
UNIPROTKB|F1M052337 Rabggtb "Geranylgeranyl transf 0.768 0.816 0.637 3.7e-96
UNIPROTKB|F1P4E5343 RABGGTB "Uncharacterized prote 0.770 0.804 0.637 4.7e-96
UNIPROTKB|P53611331 RABGGTB "Geranylgeranyl transf 0.770 0.833 0.626 5.9e-96
RGD|3530 Rabggtb "Rab geranylgeranyltransferase, beta subunit" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
 Score = 974 (347.9 bits), Expect = 4.5e-98, P = 4.5e-98
 Identities = 180/281 (64%), Positives = 213/281 (75%)

Query:     2 RDVDLTDNLPKEFLGTKHAEYIKKYSDNKEDYEYCMSEYLRMSGMYWGITTLSLLDQLDD 61
             +DV +  + P   L  KHA+YI  Y   K+DYEYCMSEYLRMSG+YWG+T + L+ QL  
Sbjct:     6 KDVTIKSDAPDTLLLEKHADYIASYGSKKDDYEYCMSEYLRMSGVYWGLTVMDLMGQLHR 65

Query:    62 MPQDTIFDFITQCIHPCGGVSASISHDPHILYTLSAVQIACLINREHELPVDKIVAYVSK 121
             M ++ I  FI  C H CGGVSASI HDPH+LYTLSAVQI  L +  H + VDK+VAYV  
Sbjct:    66 MNKEEILVFIKSCQHECGGVSASIGHDPHLLYTLSAVQILTLYDSIHVINVDKVVAYVQS 125

Query:   122 LQQPDGSFFGDMYGEVDTRFSFCAVACLSLLGKLDAINLSKAVEFILSCCNFDGGFGSRP 181
             LQ+ DGSF GD++GE+DTRFSFCAVA L+LLGKLDAIN+ KA+EF+LSC NFDGGFG RP
Sbjct:   126 LQKEDGSFAGDIWGEIDTRFSFCAVATLALLGKLDAINVEKAIEFVLSCMNFDGGFGCRP 185

Query:   182 GSESHAGLTYCCVGFLSITGHLHEIDADKLAWWLAERQLPSGGLNGRPEKLPDVCYSWWV 241
             GSESHAG  YCC GFL+IT  LH++++D L WWL ERQLPSGGLNGRPEKLPDVCYSWWV
Sbjct:   186 GSESHAGQIYCCTGFLAITSQLHQVNSDLLGWWLCERQLPSGGLNGRPEKLPDVCYSWWV 245

Query:   242 LASLHMLGRGTWINSAALRKFILASQVRNTFYFEMGVFSDK 282
             LASL ++GR  WI+   LR FILA Q   T     G F+D+
Sbjct:   246 LASLKIIGRLHWIDREKLRSFILACQDEET-----GGFADR 281
GO:0004663 "Rab geranylgeranyltransferase activity" evidence=IDA
GO:0018344 "protein geranylgeranylation" evidence=IDA
GO:0046872 "metal ion binding" evidence=IEA
UNIPROTKB|F1LSM6 Rabggtb "Geranylgeranyl transferase type-2 subunit beta" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:99537 Rabggtb "RAB geranylgeranyl transferase, b subunit" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040426-2116 rabggtb "Rab geranylgeranyltransferase, beta subunit" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F1P6X0 RABGGTB "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|G8JKY6 RABGGTB "Geranylgeranyl transferase type-2 subunit beta" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q5E9B3 RABGGTB "Geranylgeranyl transferase type-2 subunit beta" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1M052 Rabggtb "Geranylgeranyl transferase type-2 subunit beta" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1P4E5 RABGGTB "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|P53611 RABGGTB "Geranylgeranyl transferase type-2 subunit beta" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q5E9B3PGTB2_BOVIN2, ., 5, ., 1, ., 6, 00.55420.86870.9395yesN/A
Q08603PGTB2_RAT2, ., 5, ., 1, ., 6, 00.56850.86870.9395yesN/A
P20133PGTB2_YEAST2, ., 5, ., 1, ., 6, 00.40570.83510.92yesN/A
P46960PGTB2_SCHPO2, ., 5, ., 1, ., 6, 00.35190.84350.9710yesN/A
B0G172PGTB2_DICDI2, ., 5, ., 1, ., 6, 00.43560.87980.9292yesN/A
P41992GGTB2_CAEEL2, ., 5, ., 1, ., 6, 00.46590.87430.9343yesN/A
P53612PGTB2_MOUSE2, ., 5, ., 1, ., 6, 00.56570.86870.9174yesN/A
P53611PGTB2_HUMAN2, ., 5, ., 1, ., 6, 00.54920.88260.9546yesN/A

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
4th Layer2.5.1.600.946
3rd Layer2.5.10.963

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query358
PLN03201316 PLN03201, PLN03201, RAB geranylgeranyl transferase 1e-152
cd02894287 cd02894, GGTase-II, Geranylgeranyltransferase type 1e-151
cd02890286 cd02890, PTase, Protein prenyltransferase (PTase) 1e-118
COG5029342 COG5029, CAL1, Prenyltransferase, beta subunit [Po 4e-88
cd02895307 cd02895, GGTase-I, Geranylgeranyltransferase types 1e-60
cd00688300 cd00688, ISOPREN_C2_like, This group contains clas 2e-57
cd02893299 cd02893, FTase, Protein farnesyltransferase (FTase 2e-51
PLN02710439 PLN02710, PLN02710, farnesyltranstransferase subun 2e-31
pfam13249112 pfam13249, Prenyltrans_2, Prenyltransferase-like 5e-19
pfam13249112 pfam13249, Prenyltrans_2, Prenyltransferase-like 7e-16
pfam13249112 pfam13249, Prenyltrans_2, Prenyltransferase-like 2e-15
pfam0043244 pfam00432, Prenyltrans, Prenyltransferase and squa 2e-12
pfam0043244 pfam00432, Prenyltrans, Prenyltransferase and squa 8e-12
pfam0043244 pfam00432, Prenyltrans, Prenyltransferase and squa 3e-11
pfam13243109 pfam13243, Prenyltrans_1, Prenyltransferase-like 1e-06
cd02889348 cd02889, SQCY, Squalene cyclase (SQCY) domain; fou 3e-05
PLN02710439 PLN02710, PLN02710, farnesyltranstransferase subun 5e-04
cd02892634 cd02892, SQCY_1, Squalene cyclase (SQCY) domain su 8e-04
TIGR01787621 TIGR01787, squalene_cyclas, squalene/oxidosqualene 0.002
cd02889348 cd02889, SQCY, Squalene cyclase (SQCY) domain; fou 0.004
>gnl|CDD|215630 PLN03201, PLN03201, RAB geranylgeranyl transferase beta-subunit; Provisional Back     alignment and domain information 
 Score =  431 bits (1110), Expect = e-152
 Identities = 173/346 (50%), Positives = 214/346 (61%), Gaps = 39/346 (11%)

Query: 7   TDNLPKEFLGTKHAEYIKKYSDNKEDYEYCMSEYLRMSGMYWGITTLSLLDQLDDMPQDT 66
           T     E +  KH  YIK     K+ +E  + E+LRM+G YWG+T L LL +LDD+ +D 
Sbjct: 1   TSGPMGELVVDKHVRYIKSLEKKKDSFESVVMEHLRMNGAYWGLTALDLLGKLDDVDRDE 60

Query: 67  IFDFITQCIHPCGGVSASISHDPHILYTLSAVQIACLINREHELPVDKIVAYVSKLQQPD 126
           +  ++ +C H  GG   +  HDPHILYTLSAVQI  L +R   L  DK+ +YV+ LQ  D
Sbjct: 61  VVSWVMRCQHESGGFGGNTGHDPHILYTLSAVQILALFDRLDLLDADKVASYVAGLQNED 120

Query: 127 GSFFGDMYGEVDTRFSFCAVACLSLLGKLDAINLSKAVEFILSCCNFDGGFGSRPGSESH 186
           GSF GD +GE+DTRFS+CA+ CLSLL +LD IN+ KAV++I+SC NFDGGFG  PG ESH
Sbjct: 121 GSFSGDEWGEIDTRFSYCALCCLSLLKRLDKINVEKAVDYIVSCKNFDGGFGCTPGGESH 180

Query: 187 AGLTYCCVGFLSITGHLHEIDADKLAWWLAERQLPSGGLNGRPEKLPDVCYSWWVLASLH 246
           AG  +CCVG L+ITG LH +D D L WWL ERQ+ SGGLNGRPEKLPDVCYSWWVL+SL 
Sbjct: 181 AGQIFCCVGALAITGSLHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDVCYSWWVLSSLI 240

Query: 247 MLGRGTWINSAALRKFILASQVRNTFYFEMGVFSDKIPVCGVHYVDYCTQVRNRIEQGCS 306
           ++ R  WI+   L KFIL  Q             D                    E G  
Sbjct: 241 IIDRVHWIDKDKLAKFILDCQ-------------DD-------------------ENG-- 266

Query: 307 VRTCISDRPLDIPDPFHTLFGVAALTMLDPPTPDVLPVDPTYCMPV 352
               ISDRP D  D FHT FGVA L++L    P + P+DP Y +PV
Sbjct: 267 ---GISDRPDDAVDVFHTFFGVAGLSLL--GYPGLKPIDPAYALPV 307

Length = 316
>gnl|CDD|239224 cd02894, GGTase-II, Geranylgeranyltransferase type II (GGTase-II)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold) Back     alignment and domain information
>gnl|CDD|239220 cd02890, PTase, Protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold) Back     alignment and domain information
>gnl|CDD|227362 COG5029, CAL1, Prenyltransferase, beta subunit [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|239225 cd02895, GGTase-I, Geranylgeranyltransferase types I (GGTase-I)-like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold) Back     alignment and domain information
>gnl|CDD|238362 cd00688, ISOPREN_C2_like, This group contains class II terpene cyclases, protein prenyltransferases beta subunit, two broadly specific proteinase inhibitors alpha2-macroglobulin (alpha (2)-M) and pregnancy zone protein (PZP) and, the C3 C4 and C5 components of vertebrate complement Back     alignment and domain information
>gnl|CDD|239223 cd02893, FTase, Protein farnesyltransferase (FTase)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold) Back     alignment and domain information
>gnl|CDD|215380 PLN02710, PLN02710, farnesyltranstransferase subunit beta Back     alignment and domain information
>gnl|CDD|222007 pfam13249, Prenyltrans_2, Prenyltransferase-like Back     alignment and domain information
>gnl|CDD|222007 pfam13249, Prenyltrans_2, Prenyltransferase-like Back     alignment and domain information
>gnl|CDD|222007 pfam13249, Prenyltrans_2, Prenyltransferase-like Back     alignment and domain information
>gnl|CDD|109488 pfam00432, Prenyltrans, Prenyltransferase and squalene oxidase repeat Back     alignment and domain information
>gnl|CDD|109488 pfam00432, Prenyltrans, Prenyltransferase and squalene oxidase repeat Back     alignment and domain information
>gnl|CDD|109488 pfam00432, Prenyltrans, Prenyltransferase and squalene oxidase repeat Back     alignment and domain information
>gnl|CDD|205423 pfam13243, Prenyltrans_1, Prenyltransferase-like Back     alignment and domain information
>gnl|CDD|239219 cd02889, SQCY, Squalene cyclase (SQCY) domain; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold Back     alignment and domain information
>gnl|CDD|215380 PLN02710, PLN02710, farnesyltranstransferase subunit beta Back     alignment and domain information
>gnl|CDD|239222 cd02892, SQCY_1, Squalene cyclase (SQCY) domain subgroup 1; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold Back     alignment and domain information
>gnl|CDD|233578 TIGR01787, squalene_cyclas, squalene/oxidosqualene cyclases Back     alignment and domain information
>gnl|CDD|239219 cd02889, SQCY, Squalene cyclase (SQCY) domain; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 358
KOG0366|consensus329 100.0
PLN02710439 farnesyltranstransferase subunit beta 100.0
PLN03201316 RAB geranylgeranyl transferase beta-subunit; Provi 100.0
COG5029342 CAL1 Prenyltransferase, beta subunit [Posttranslat 100.0
KOG0365|consensus423 100.0
cd02893299 FTase Protein farnesyltransferase (FTase)_like pro 100.0
KOG0367|consensus347 100.0
cd02895307 GGTase-I Geranylgeranyltransferase types I (GGTase 100.0
cd02894287 GGTase-II Geranylgeranyltransferase type II (GGTas 100.0
cd02890286 PTase Protein prenyltransferase (PTase) domain, be 100.0
cd02895307 GGTase-I Geranylgeranyltransferase types I (GGTase 100.0
cd02894287 GGTase-II Geranylgeranyltransferase type II (GGTas 100.0
PLN03201316 RAB geranylgeranyl transferase beta-subunit; Provi 100.0
cd02893299 FTase Protein farnesyltransferase (FTase)_like pro 100.0
PLN02710 439 farnesyltranstransferase subunit beta 100.0
cd02890286 PTase Protein prenyltransferase (PTase) domain, be 100.0
KOG0366|consensus329 100.0
COG5029342 CAL1 Prenyltransferase, beta subunit [Posttranslat 100.0
KOG0367|consensus347 100.0
cd00688300 ISOPREN_C2_like This group contains class II terpe 100.0
KOG0365|consensus423 100.0
cd00688300 ISOPREN_C2_like This group contains class II terpe 99.95
cd02889348 SQCY Squalene cyclase (SQCY) domain; found in clas 99.91
TIGR03463634 osq_cycl 2,3-oxidosqualene cyclase. This model ide 99.9
TIGR01507635 hopene_cyclase squalene-hopene cyclase. SHC is an 99.9
cd02892634 SQCY_1 Squalene cyclase (SQCY) domain subgroup 1; 99.89
TIGR01787621 squalene_cyclas squalene/oxidosqualene cyclases. T 99.88
cd02889348 SQCY Squalene cyclase (SQCY) domain; found in clas 99.86
TIGR03463634 osq_cycl 2,3-oxidosqualene cyclase. This model ide 99.85
PLN02993763 lupeol synthase 99.84
PLN03012759 Camelliol C synthase 99.84
TIGR01507635 hopene_cyclase squalene-hopene cyclase. SHC is an 99.83
cd02892634 SQCY_1 Squalene cyclase (SQCY) domain subgroup 1; 99.83
PF13249113 Prenyltrans_2: Prenyltransferase-like; PDB: 1O6R_B 99.81
COG1689274 Uncharacterized protein conserved in archaea [Func 99.81
TIGR01787621 squalene_cyclas squalene/oxidosqualene cyclases. T 99.78
PLN03012759 Camelliol C synthase 99.78
PLN02993763 lupeol synthase 99.78
PF13249113 Prenyltrans_2: Prenyltransferase-like; PDB: 1O6R_B 99.76
cd02897292 A2M_2 Proteins similar to alpha2-macroglobulin (al 99.67
cd02896297 complement_C3_C4_C5 Proteins similar to C3, C4 and 99.65
COG1689274 Uncharacterized protein conserved in archaea [Func 99.5
cd02896297 complement_C3_C4_C5 Proteins similar to C3, C4 and 99.46
cd02897292 A2M_2 Proteins similar to alpha2-macroglobulin (al 99.45
) (2,3-epoxysqualene-cycloartenol cyclase) is a plant enzyme that catalyzes the cyclization of (S)-2,3-epoxysqualene to cycloartenol.; GO: 0003824 catalytic activity; PDB: 2IEJ_B 1LD7_B 1LD8_B 2H6G_B 1TN6_B 1S63_B 1MZC_B 2H6I_B 2H6F_B 1JCQ_B ...." target="_blank" href="http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PF00432">PF0043244 Prenyltrans: Prenyltransferase and squalene oxidas 99.35
) (2,3-epoxysqualene-cycloartenol cyclase) is a plant enzyme that catalyzes the cyclization of (S)-2,3-epoxysqualene to cycloartenol.; GO: 0003824 catalytic activity; PDB: 2IEJ_B 1LD7_B 1LD8_B 2H6G_B 1TN6_B 1S63_B 1MZC_B 2H6I_B 2H6F_B 1JCQ_B ...." target="_blank" href="http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PF00432">PF0043244 Prenyltrans: Prenyltransferase and squalene oxidas 99.33
cd02891282 A2M_like Proteins similar to alpha2-macroglobulin 99.29
KOG0497|consensus760 99.27
PF13243109 Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A 99.17
KOG0497|consensus760 99.16
PF13243109 Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A 99.11
PF07678246 A2M_comp: A-macroglobulin complement component; In 98.87
cd02891282 A2M_like Proteins similar to alpha2-macroglobulin 98.8
PF07678246 A2M_comp: A-macroglobulin complement component; In 98.65
COG1657517 SqhC Squalene cyclase [Lipid metabolism] 98.38
COG1657517 SqhC Squalene cyclase [Lipid metabolism] 98.3
PLN02592 800 ent-copalyl diphosphate synthase 97.32
PLN02279 784 ent-kaur-16-ene synthase 97.29
TIGR02474290 pec_lyase pectate lyase, PelA/Pel-15E family. Memb 96.92
TIGR02474290 pec_lyase pectate lyase, PelA/Pel-15E family. Memb 96.19
KOG1366|consensus 1436 95.86
PF01122326 Cobalamin_bind: Eukaryotic cobalamin-binding prote 91.41
PF09492289 Pec_lyase: Pectic acid lyase; InterPro: IPR012669 87.9
PF01122326 Cobalamin_bind: Eukaryotic cobalamin-binding prote 87.18
PF05817 636 Ribophorin_II: Oligosaccharyltransferase subunit R 85.63
PLN02592 800 ent-copalyl diphosphate synthase 85.29
>KOG0366|consensus Back     alignment and domain information 
Probab=100.00  E-value=2e-85  Score=585.90  Aligned_cols=316  Identities=59%  Similarity=1.101  Sum_probs=308.5

Q ss_pred             cccccCCCCccccchHHHHHHHHHhhcCCCCccccccccchHHHHHHHHHHHHHhCCCCCCChHHHHHHHHhcCCCCCcc
Q psy15438          2 RDVDLTDNLPKEFLGTKHAEYIKKYSDNKEDYEYCMSEYLRMSGMYWGITTLSLLDQLDDMPQDTIFDFITQCIHPCGGV   81 (358)
Q Consensus         2 ~~~~~~~~~~~~l~~~~h~~yl~~~~~~~~~~~~~~~~~~~~~~~y~~l~~L~lL~~~~~~~~~~~i~~i~~~q~~dGGF   81 (358)
                      +||++..+.++++.++||++||....+++..+.|+..|+.|++.+||++++|++|+.++..++|+++.|+++||+++|||
T Consensus         6 ~dv~~~~d~~~~Ll~dkH~~yI~~~~~kk~~fey~l~EhlRmsgiYWg~tal~ll~~le~~~~eeiv~~v~~C~~~~GGf   85 (329)
T KOG0366|consen    6 LDVREEKDAPDELLKDKHARYIESYGKKKDSFEYCLTEHLRMSGIYWGLTALDLLGQLERMSREEIVSFVLSCQHEDGGF   85 (329)
T ss_pred             ccccCcCCcHHHHHHHHHHHHHHHhccccchHHHHHHhHhhhcchhhhhhHHHHhcccchhhHHHHHHHHHheecCCCCc
Confidence            58999999999999999999999988888889999999999999999999999999998889999999999999999999


Q ss_pred             cccCCCCCchhHHHHHHHHHHHhcccCCCChHHHHHHHHhcCCCCCCcccccCCCcccchhHHHHHHHHHhCCCChhcHH
Q psy15438         82 SASISHDPHILYTLSAVQIACLINREHELPVDKIVAYVSKLQQPDGSFFGDMYGEVDTRFSFCAVACLSLLGKLDAINLS  161 (358)
Q Consensus        82 ~~~~~~~~~~~~Ty~Al~~L~ll~~~~~~~~~~~~~~l~s~Q~~dGgf~~~~~~esd~~~ty~al~~l~ll~~~~~~~~~  161 (358)
                      ++.+|++||+.+|++||++|++++.++.+|++++..||..+|++||+|.+..+||.|+|++|||+++|++|+.++.++++
T Consensus        86 a~~~Ghd~hll~TlsAvQiL~~ydsi~~~d~d~v~~yi~gLq~edGsF~gD~wGEvDTRfs~~av~~L~lLg~ld~~nve  165 (329)
T KOG0366|consen   86 AGCPGHDPHLLYTLSAVQILALYDSINVLDRDKVASYIKGLQQEDGSFSGDIWGEVDTRFSYCAVACLALLGKLDTINVE  165 (329)
T ss_pred             CCCCCCChHHHHHHHHHHHHHHHcccccccHHHHHHHHHhhcCcCCcccCCcccccchhhhHHHHHHHHHHhhHHHhhHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcccCCCCCCCCCCCCCcccHHHHHHHHHHhcccCChhcHHHHHHHHHhcCCCCCcccCCCCCCCChhHHHHH
Q psy15438        162 KAVEFILSCCNFDGGFGSRPGSESHAGLTYCCVGFLSITGHLHEIDADKLAWWLAERQLPSGGLNGRPEKLPDVCYSWWV  241 (358)
Q Consensus       162 ~~v~~L~s~Q~~dGGf~~~pg~esh~~~T~calasL~llg~~~~~~~~~~~~wL~~~Q~~~GGf~gr~~k~~D~cys~w~  241 (358)
                      ++|+|+++|.|.|||||.+||.|||++..||++++|+++++++.+|.+.+.+||.+||.++||.||||+|.+|+|||||+
T Consensus       166 ~aVd~~~~CyN~DGGFG~~pGaESHagqifcCvgaLai~~~L~~vd~d~lgwwlceRQ~~sGGLNGRpeKlpDVCYSwWv  245 (329)
T KOG0366|consen  166 KAVDFVLSCYNFDGGFGCRPGAESHAGQIFCCVGALAITGKLHLVDRDLLGWWLCERQLPSGGLNGRPEKLPDVCYSWWV  245 (329)
T ss_pred             HHHHHHHhhcccCCCcCCCCCcccccceehhhHHHHHHccchhhcCHHHHHHHHHhccCCCCCCCCCcccCcchhhHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhCCCCCCCHHHHHHHHHHhcCCCCCccccCCccCCCCCCcccccccccccccccccccccccccCCCCCCCCCh
Q psy15438        242 LASLHMLGRGTWINSAALRKFILASQVRNTFYFEMGVFSDKIPVCGVHYVDYCTQVRNRIEQGCSVRTCISDRPLDIPDP  321 (358)
Q Consensus       242 ~a~L~ll~~~~~~d~~~l~~~ll~~Q~~~~~~~~~GGf~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~D~  321 (358)
                      +++|.++|+.+|+|++++++||++||+.     +.|||                                +|||+..+|+
T Consensus       246 lsSL~iigrl~wId~ekL~~FIl~cQd~-----~~GGf--------------------------------sDRpgd~~D~  288 (329)
T KOG0366|consen  246 LSSLAIIGRLHWIDREKLTKFILACQDE-----ETGGF--------------------------------SDRPGDEVDI  288 (329)
T ss_pred             HhHHHHhhhhhhccHHHHHHHHHhcCCC-----CCCCc--------------------------------CCCCCCcccH
Confidence            9999999999999999999999999998     78999                                9999999999


Q ss_pred             HHHHHHHHHHHhcCCCCCCCCCcCccccCCccccc
Q psy15438        322 FHTLFGVAALTMLDPPTPDVLPVDPTYCMPVRTFH  356 (358)
Q Consensus       322 ~hT~~~l~~Ls~~~~~~~~~~~~~~~~~~~~~~~~  356 (358)
                      |||+|++|||||+++  ++|++|||.||||++++.
T Consensus       289 fHt~FgiAGLSLlg~--~~l~~idP~fcmp~~v~~  321 (329)
T KOG0366|consen  289 FHTLFGIAGLSLLGY--PGLKPIDPIFCMPKEVLQ  321 (329)
T ss_pred             HHHHHHHhhHhhhCC--CCceecCCcccCcHHHHh
Confidence            999999999999999  999999999999987653

>PLN02710 farnesyltranstransferase subunit beta Back     alignment and domain information
>PLN03201 RAB geranylgeranyl transferase beta-subunit; Provisional Back     alignment and domain information
>COG5029 CAL1 Prenyltransferase, beta subunit [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0365|consensus Back     alignment and domain information
>cd02893 FTase Protein farnesyltransferase (FTase)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold) Back     alignment and domain information
>KOG0367|consensus Back     alignment and domain information
>cd02895 GGTase-I Geranylgeranyltransferase types I (GGTase-I)-like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold) Back     alignment and domain information
>cd02894 GGTase-II Geranylgeranyltransferase type II (GGTase-II)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold) Back     alignment and domain information
>cd02890 PTase Protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold) Back     alignment and domain information
>cd02895 GGTase-I Geranylgeranyltransferase types I (GGTase-I)-like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold) Back     alignment and domain information
>cd02894 GGTase-II Geranylgeranyltransferase type II (GGTase-II)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold) Back     alignment and domain information
>PLN03201 RAB geranylgeranyl transferase beta-subunit; Provisional Back     alignment and domain information
>cd02893 FTase Protein farnesyltransferase (FTase)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold) Back     alignment and domain information
>PLN02710 farnesyltranstransferase subunit beta Back     alignment and domain information
>cd02890 PTase Protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold) Back     alignment and domain information
>KOG0366|consensus Back     alignment and domain information
>COG5029 CAL1 Prenyltransferase, beta subunit [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0367|consensus Back     alignment and domain information
>cd00688 ISOPREN_C2_like This group contains class II terpene cyclases, protein prenyltransferases beta subunit, two broadly specific proteinase inhibitors alpha2-macroglobulin (alpha (2)-M) and pregnancy zone protein (PZP) and, the C3 C4 and C5 components of vertebrate complement Back     alignment and domain information
>KOG0365|consensus Back     alignment and domain information
>cd00688 ISOPREN_C2_like This group contains class II terpene cyclases, protein prenyltransferases beta subunit, two broadly specific proteinase inhibitors alpha2-macroglobulin (alpha (2)-M) and pregnancy zone protein (PZP) and, the C3 C4 and C5 components of vertebrate complement Back     alignment and domain information
>cd02889 SQCY Squalene cyclase (SQCY) domain; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold Back     alignment and domain information
>TIGR03463 osq_cycl 2,3-oxidosqualene cyclase Back     alignment and domain information
>TIGR01507 hopene_cyclase squalene-hopene cyclase Back     alignment and domain information
>cd02892 SQCY_1 Squalene cyclase (SQCY) domain subgroup 1; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold Back     alignment and domain information
>TIGR01787 squalene_cyclas squalene/oxidosqualene cyclases Back     alignment and domain information
>cd02889 SQCY Squalene cyclase (SQCY) domain; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold Back     alignment and domain information
>TIGR03463 osq_cycl 2,3-oxidosqualene cyclase Back     alignment and domain information
>PLN02993 lupeol synthase Back     alignment and domain information
>PLN03012 Camelliol C synthase Back     alignment and domain information
>TIGR01507 hopene_cyclase squalene-hopene cyclase Back     alignment and domain information
>cd02892 SQCY_1 Squalene cyclase (SQCY) domain subgroup 1; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold Back     alignment and domain information
>PF13249 Prenyltrans_2: Prenyltransferase-like; PDB: 1O6R_B 1O6Q_B 1H35_C 1H3A_C 1SQC_A 1UMP_A 1O6H_C 1O79_B 1GSZ_C 1H37_C Back     alignment and domain information
>COG1689 Uncharacterized protein conserved in archaea [Function unknown] Back     alignment and domain information
>TIGR01787 squalene_cyclas squalene/oxidosqualene cyclases Back     alignment and domain information
>PLN03012 Camelliol C synthase Back     alignment and domain information
>PLN02993 lupeol synthase Back     alignment and domain information
>PF13249 Prenyltrans_2: Prenyltransferase-like; PDB: 1O6R_B 1O6Q_B 1H35_C 1H3A_C 1SQC_A 1UMP_A 1O6H_C 1O79_B 1GSZ_C 1H37_C Back     alignment and domain information
>cd02897 A2M_2 Proteins similar to alpha2-macroglobulin (alpha (2)-M) Back     alignment and domain information
>cd02896 complement_C3_C4_C5 Proteins similar to C3, C4 and C5 of vertebrate complement Back     alignment and domain information
>COG1689 Uncharacterized protein conserved in archaea [Function unknown] Back     alignment and domain information
>cd02896 complement_C3_C4_C5 Proteins similar to C3, C4 and C5 of vertebrate complement Back     alignment and domain information
>cd02897 A2M_2 Proteins similar to alpha2-macroglobulin (alpha (2)-M) Back     alignment and domain information
>PF00432 Prenyltrans: Prenyltransferase and squalene oxidase repeat This Prosite family is a subset of the Pfam family Back     alignment and domain information
>PF00432 Prenyltrans: Prenyltransferase and squalene oxidase repeat This Prosite family is a subset of the Pfam family Back     alignment and domain information
>cd02891 A2M_like Proteins similar to alpha2-macroglobulin (alpha (2)-M) Back     alignment and domain information
>KOG0497|consensus Back     alignment and domain information
>PF13243 Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A 3SAE_A 3SDV_A 3SDT_A 3SDQ_A 3SDU_A Back     alignment and domain information
>KOG0497|consensus Back     alignment and domain information
>PF13243 Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A 3SAE_A 3SDV_A 3SDT_A 3SDQ_A 3SDU_A Back     alignment and domain information
>PF07678 A2M_comp: A-macroglobulin complement component; InterPro: IPR011626 This domain covers the complement component region of the alpha-2-macroglobulin family Back     alignment and domain information
>cd02891 A2M_like Proteins similar to alpha2-macroglobulin (alpha (2)-M) Back     alignment and domain information
>PF07678 A2M_comp: A-macroglobulin complement component; InterPro: IPR011626 This domain covers the complement component region of the alpha-2-macroglobulin family Back     alignment and domain information
>COG1657 SqhC Squalene cyclase [Lipid metabolism] Back     alignment and domain information
>COG1657 SqhC Squalene cyclase [Lipid metabolism] Back     alignment and domain information
>PLN02592 ent-copalyl diphosphate synthase Back     alignment and domain information
>PLN02279 ent-kaur-16-ene synthase Back     alignment and domain information
>TIGR02474 pec_lyase pectate lyase, PelA/Pel-15E family Back     alignment and domain information
>TIGR02474 pec_lyase pectate lyase, PelA/Pel-15E family Back     alignment and domain information
>KOG1366|consensus Back     alignment and domain information
>PF01122 Cobalamin_bind: Eukaryotic cobalamin-binding protein; InterPro: IPR002157 Cobalamin (Cbl or vitamin B12) is only accessible through diet in mammals Back     alignment and domain information
>PF09492 Pec_lyase: Pectic acid lyase; InterPro: IPR012669 Members of this family are isozymes of pectate lyase (4 Back     alignment and domain information
>PF01122 Cobalamin_bind: Eukaryotic cobalamin-binding protein; InterPro: IPR002157 Cobalamin (Cbl or vitamin B12) is only accessible through diet in mammals Back     alignment and domain information
>PF05817 Ribophorin_II: Oligosaccharyltransferase subunit Ribophorin II; InterPro: IPR008814 This family consists of several eukaryotic Ribophorin II (RPN2) proteins Back     alignment and domain information
>PLN02592 ent-copalyl diphosphate synthase Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query358
1dce_B331 Crystal Structure Of Rab Geranylgeranyltransferase 1e-109
3pz1_B330 Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig) 1e-109
3euv_B427 Crystal Structure Of Ftase(Alpha-Subunit; Beta-Subu 1e-28
3euv_B427 Crystal Structure Of Ftase(Alpha-Subunit; Beta-Subu 2e-05
2h6i_B437 W102tY365F PROTEIN FARNESYLTRANSFERASE DOUBLE MUTAN 2e-28
2h6g_B437 W102t Protein Farnesyltransferase Mutant Complexed 2e-28
1n95_B402 Aryl Tetrahydrophyridine Inhbitors Of Farnesyltranf 5e-28
1n95_B402 Aryl Tetrahydrophyridine Inhbitors Of Farnesyltranf 6e-06
1n94_B397 Aryl Tetrahydropyridine Inhbitors Of Farnesyltransf 5e-28
1n94_B397 Aryl Tetrahydropyridine Inhbitors Of Farnesyltransf 6e-06
1nl4_B401 Crystal Structure Of Rat Farnesyl Transferase In Co 5e-28
1nl4_B401 Crystal Structure Of Rat Farnesyl Transferase In Co 6e-06
1ft2_B401 Co-Crystal Structure Of Protein Farnesyltransferase 5e-28
1ft2_B401 Co-Crystal Structure Of Protein Farnesyltransferase 6e-06
2zir_B440 Crystal Structure Of Rat Protein Farnesyltransferas 5e-28
2zir_B440 Crystal Structure Of Rat Protein Farnesyltransferas 6e-06
1ft1_B437 Crystal Structure Of Protein Farnesyltransferase At 5e-28
1ft1_B437 Crystal Structure Of Protein Farnesyltransferase At 5e-06
3pz4_B426 Crystal Structure Of Ftase(Alpha-Subunit; Beta-Subu 5e-28
3pz4_B426 Crystal Structure Of Ftase(Alpha-Subunit; Beta-Subu 6e-06
1o1r_B427 Structure Of Fpt Bound To Ggpp Length = 427 5e-28
1o1r_B427 Structure Of Fpt Bound To Ggpp Length = 427 6e-06
2h6h_B437 Y365f Protein Farnesyltransferase Mutant Complexed 6e-28
1jcq_B437 Crystal Structure Of Human Protein Farnesyltransfer 6e-28
1n4p_B377 Protein Geranylgeranyltransferase Type-I Complexed 1e-21
3q73_B520 Cryptococcus Neoformans Protein Farnesyltransferase 5e-14
3dra_B390 Candida Albicans Protein Geranylgeranyltransferase- 2e-10
>pdb|1DCE|B Chain B, Crystal Structure Of Rab Geranylgeranyltransferase From Rat Brain Length = 331 Back     alignment and structure 
Iteration: 1

 Score =  390 bits (1001), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 191/329 (58%), Positives = 225/329 (68%), Gaps = 37/329 (11%)
Query: 2   RDVDLTDNLPKEFLGTKHAEYIKKYSDNKEDYEYCMSEYLRMSGMYWGITTLSLLDQLDD 61
           +DV +  + P   L  KHA+YI  Y   K+DYEYCMSEYLRMSG+YWG+T + L+ QL  
Sbjct: 6   KDVTIKSDAPDTLLLEKHADYIASYGSKKDDYEYCMSEYLRMSGVYWGLTVMDLMGQLHR 65
Query: 62  MPQDTIFDFITQCIHPCGGVSASISHDPHILYTLSAVQIACLINREHELPVDKIVAYVSK 121
           M ++ I  FI  C H CGGVSASI HDPH+LYTLSAVQI  L +  H + VDK+VAYV  
Sbjct: 66  MNKEEILVFIKSCQHECGGVSASIGHDPHLLYTLSAVQILTLYDSIHVINVDKVVAYVQS 125
Query: 122 LQQPDGSFFGDMYGEVDTRFSFCAVACLSLLGKLDAINLSKAVEFILSCCNFDGGFGSRP 181
           LQ+ DGSF GD++GE+DTRFSFCAVA L+LLGKLDAIN+ KA+EF+LSC NFDGGFG RP
Sbjct: 126 LQKEDGSFAGDIWGEIDTRFSFCAVATLALLGKLDAINVEKAIEFVLSCMNFDGGFGCRP 185
Query: 182 GSESHAGLTYCCVGFLSITGHLHEIDADKLAWWLAERQLPSGGLNGRPEKLPDVCYSWWV 241
           GSESHAG  YCC GFL+IT  LH++++D L WWL ERQLPSGGLNGRPEKLPDVCYSWWV
Sbjct: 186 GSESHAGQIYCCTGFLAITSQLHQVNSDLLGWWLCERQLPSGGLNGRPEKLPDVCYSWWV 245
Query: 242 LASLHMLGRGTWINSAALRKFILASQVRNTFYFEMGVFSDKIPVCGVHYVDYCTQVRNRI 301
           LASL ++GR  WI+   LR FILA Q   T  F                           
Sbjct: 246 LASLKIIGRLHWIDREKLRSFILACQDEETGGF--------------------------- 278
Query: 302 EQGCSVRTCISDRPLDIPDPFHTLFGVAA 330
                     +DRP D+ DPFHTLFG+A 
Sbjct: 279 ----------ADRPGDMVDPFHTLFGIAG 297
>pdb|3PZ1|B Chain B, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig) In Complex With Bms3 Length = 330 Back     alignment and structure
>pdb|3EUV|B Chain B, Crystal Structure Of Ftase(Alpha-Subunit; Beta-Subunit Delta C10, W102t, Y154t) In Complex With Biotingpp Length = 427 Back     alignment and structure
>pdb|3EUV|B Chain B, Crystal Structure Of Ftase(Alpha-Subunit; Beta-Subunit Delta C10, W102t, Y154t) In Complex With Biotingpp Length = 427 Back     alignment and structure
>pdb|2H6I|B Chain B, W102tY365F PROTEIN FARNESYLTRANSFERASE DOUBLE MUTANT COMPLEXED WITH A Geranylgeranylated Ddptasacvls Peptide Product At 3.0a Length = 437 Back     alignment and structure
>pdb|2H6G|B Chain B, W102t Protein Farnesyltransferase Mutant Complexed With A Geranylgeranylated Ddptasacvls Peptide Product At 1.85a Resolution Length = 437 Back     alignment and structure
>pdb|1N95|B Chain B, Aryl Tetrahydrophyridine Inhbitors Of Farnesyltranferase: Glycine, Phenylalanine And Histidine Derivatives Length = 402 Back     alignment and structure
>pdb|1N95|B Chain B, Aryl Tetrahydrophyridine Inhbitors Of Farnesyltranferase: Glycine, Phenylalanine And Histidine Derivatives Length = 402 Back     alignment and structure
>pdb|1N94|B Chain B, Aryl Tetrahydropyridine Inhbitors Of Farnesyltransferase: Glycine, Phenylalanine And Histidine Derivates Length = 397 Back     alignment and structure
>pdb|1N94|B Chain B, Aryl Tetrahydropyridine Inhbitors Of Farnesyltransferase: Glycine, Phenylalanine And Histidine Derivates Length = 397 Back     alignment and structure
>pdb|1NL4|B Chain B, Crystal Structure Of Rat Farnesyl Transferase In Complex With A Potent Biphenyl Inhibitor Length = 401 Back     alignment and structure
>pdb|1NL4|B Chain B, Crystal Structure Of Rat Farnesyl Transferase In Complex With A Potent Biphenyl Inhibitor Length = 401 Back     alignment and structure
>pdb|1FT2|B Chain B, Co-Crystal Structure Of Protein Farnesyltransferase Complexed With A Farnesyl Diphosphate Substrate Length = 401 Back     alignment and structure
>pdb|1FT2|B Chain B, Co-Crystal Structure Of Protein Farnesyltransferase Complexed With A Farnesyl Diphosphate Substrate Length = 401 Back     alignment and structure
>pdb|2ZIR|B Chain B, Crystal Structure Of Rat Protein Farnesyltransferase Complexed With A Benzofuran Inhibitor And Fpp Length = 440 Back     alignment and structure
>pdb|2ZIR|B Chain B, Crystal Structure Of Rat Protein Farnesyltransferase Complexed With A Benzofuran Inhibitor And Fpp Length = 440 Back     alignment and structure
>pdb|1FT1|B Chain B, Crystal Structure Of Protein Farnesyltransferase At 2.25 Angstroms Resolution Length = 437 Back     alignment and structure
>pdb|1FT1|B Chain B, Crystal Structure Of Protein Farnesyltransferase At 2.25 Angstroms Resolution Length = 437 Back     alignment and structure
>pdb|3PZ4|B Chain B, Crystal Structure Of Ftase(Alpha-Subunit; Beta-Subunit Delta C10) In Complex With Bms3 And Lipid Substrate Fpp Length = 426 Back     alignment and structure
>pdb|3PZ4|B Chain B, Crystal Structure Of Ftase(Alpha-Subunit; Beta-Subunit Delta C10) In Complex With Bms3 And Lipid Substrate Fpp Length = 426 Back     alignment and structure
>pdb|1O1R|B Chain B, Structure Of Fpt Bound To Ggpp Length = 427 Back     alignment and structure
>pdb|1O1R|B Chain B, Structure Of Fpt Bound To Ggpp Length = 427 Back     alignment and structure
>pdb|2H6H|B Chain B, Y365f Protein Farnesyltransferase Mutant Complexed With A Farnesylated Ddptasacvls Peptide Product At 1.8a Length = 437 Back     alignment and structure
>pdb|1JCQ|B Chain B, Crystal Structure Of Human Protein Farnesyltransferase Complexed With Farnesyl Diphosphate And The Peptidomimetic Inhibitor L-739,750 Length = 437 Back     alignment and structure
>pdb|1N4P|B Chain B, Protein Geranylgeranyltransferase Type-I Complexed With Geranylgeranyl Diphosphate Length = 377 Back     alignment and structure
>pdb|3Q73|B Chain B, Cryptococcus Neoformans Protein Farnesyltransferase, Apo Enzyme Length = 520 Back     alignment and structure
>pdb|3DRA|B Chain B, Candida Albicans Protein Geranylgeranyltransferase-I Complexed With Ggpp Length = 390 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query358
3dss_B331 Geranylgeranyl transferase type-2 subunit beta; pr 1e-109
2h6f_B437 Protein farnesyltransferase beta subunit; ftase, f 4e-92
3q7a_B520 Farnesyltransferase beta subunit; protein prenyltr 9e-88
1n4q_B377 Geranyltransferase type-I beta subunit; protein ge 4e-87
3dra_B390 Geranylgeranyltransferase type I beta subunit; ger 2e-86
2sqc_A631 Squalene-hopene cyclase; isomerase, triterpene cyc 2e-06
2sqc_A 631 Squalene-hopene cyclase; isomerase, triterpene cyc 6e-05
2sqc_A631 Squalene-hopene cyclase; isomerase, triterpene cyc 9e-05
1w6k_A732 Lanosterol synthase; cyclase, cholesterol, monotop 7e-04
>3dss_B Geranylgeranyl transferase type-2 subunit beta; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1ltx_B* 3c72_B* 1dce_B 3dst_B* 3dsu_B* 3dsv_B* 3dsw_B* 3dsx_B* 3hxb_B* 3hxc_B* 3hxd_B* 3hxe_B* 3hxf_B* 3pz1_B* 3pz2_B* 3pz3_B* Length = 331 Back     alignment and structure
 Score =  320 bits (822), Expect = e-109
 Identities = 198/354 (55%), Positives = 236/354 (66%), Gaps = 39/354 (11%)

Query: 2   RDVDLTDNLPKEFLGTKHAEYIKKYSDNKEDYEYCMSEYLRMSGMYWGITTLSLLDQLDD 61
           +DV +  + P   L  KHA+YI  Y   K+DYEYCMSEYLRMSG+YWG+T + L+ QL  
Sbjct: 6   KDVTIKSDAPDTLLLEKHADYIASYGSKKDDYEYCMSEYLRMSGVYWGLTVMDLMGQLHR 65

Query: 62  MPQDTIFDFITQCIHPCGGVSASISHDPHILYTLSAVQIACLINREHELPVDKIVAYVSK 121
           M ++ I  FI  C H CGGVSASI HDPH+LYTLSAVQI  L +  H + VDK+VAYV  
Sbjct: 66  MNKEEILVFIKSCQHECGGVSASIGHDPHLLYTLSAVQILTLYDSIHVINVDKVVAYVQS 125

Query: 122 LQQPDGSFFGDMYGEVDTRFSFCAVACLSLLGKLDAINLSKAVEFILSCCNFDGGFGSRP 181
           LQ+ DGSF GD++GE+DTRFSFCAVA L+LLGKLDAIN+ KA+EF+LSC NFDGGFG RP
Sbjct: 126 LQKEDGSFAGDIWGEIDTRFSFCAVATLALLGKLDAINVEKAIEFVLSCMNFDGGFGCRP 185

Query: 182 GSESHAGLTYCCVGFLSITGHLHEIDADKLAWWLAERQLPSGGLNGRPEKLPDVCYSWWV 241
           GSESHAG  YCC GFL+IT  LH++++D L WWL ERQLPSGGLNGRPEKLPDVCYSWWV
Sbjct: 186 GSESHAGQIYCCTGFLAITSQLHQVNSDLLGWWLCERQLPSGGLNGRPEKLPDVCYSWWV 245

Query: 242 LASLHMLGRGTWINSAALRKFILASQVRNTFYFEMGVFSDKIPVCGVHYVDYCTQVRNRI 301
           LASL ++GR  WI+   LR FILA Q   T                              
Sbjct: 246 LASLKIIGRLHWIDREKLRSFILACQDEETG----------------------------- 276

Query: 302 EQGCSVRTCISDRPLDIPDPFHTLFGVAALTMLDPPTPDVLPVDPTYCMPVRTF 355
                     +DRP D+ DPFHTLFG+A L++L      + PV P +CMP    
Sbjct: 277 --------GFADRPGDMVDPFHTLFGIAGLSLLG--EEQIKPVSPVFCMPEEVL 320
>2h6f_B Protein farnesyltransferase beta subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.102.4.3 PDB: 1jcq_B* 1ld7_B* 1mzc_B* 1s63_B* 1sa4_B* 1tn6_B* 2f0y_B* 1ld8_B* 2iej_B* 3e37_B* 2h6h_B* 2h6g_B* 2h6i_B* 1o1t_B* 1o1s_B* 1o1r_B* 3eu5_B* 3pz4_B* 3e33_B* 1d8e_B* ... Length = 437 Back     alignment and structure
>3q7a_B Farnesyltransferase beta subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3CX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_B* 3q78_B* 3q79_B* 3q75_B* 3q7f_B* 3sfx_B* 3sfy_B* Length = 520 Back     alignment and structure
>1n4q_B Geranyltransferase type-I beta subunit; protein geranylgeranyltransferase type-I, ggtase; HET: MGM GER; 2.40A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1n4p_B* 1n4r_B* 1n4s_B* 1s64_B* 1tnb_B* 1tno_B* 1tnu_B* 1tny_B* 1tnz_B* Length = 377 Back     alignment and structure
>3dra_B Geranylgeranyltransferase type I beta subunit; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} Length = 390 Back     alignment and structure
>2sqc_A Squalene-hopene cyclase; isomerase, triterpene cyclase, monotopic membrane protein, QW-sequence, repeat; HET: C8E; 2.00A {Alicyclobacillus acidocaldarius} SCOP: a.102.4.2 a.102.4.2 PDB: 3sqc_A 1ump_A* 1h35_A* 1h36_A* 1h37_A* 1h39_A* 1h3a_A* 1h3b_A* 1h3c_A* 1o6h_A* 1o6q_A* 1gsz_A* 1o79_A* 1sqc_A* 1o6r_A* Length = 631 Back     alignment and structure
>2sqc_A Squalene-hopene cyclase; isomerase, triterpene cyclase, monotopic membrane protein, QW-sequence, repeat; HET: C8E; 2.00A {Alicyclobacillus acidocaldarius} SCOP: a.102.4.2 a.102.4.2 PDB: 3sqc_A 1ump_A* 1h35_A* 1h36_A* 1h37_A* 1h39_A* 1h3a_A* 1h3b_A* 1h3c_A* 1o6h_A* 1o6q_A* 1gsz_A* 1o79_A* 1sqc_A* 1o6r_A* Length = 631 Back     alignment and structure
>2sqc_A Squalene-hopene cyclase; isomerase, triterpene cyclase, monotopic membrane protein, QW-sequence, repeat; HET: C8E; 2.00A {Alicyclobacillus acidocaldarius} SCOP: a.102.4.2 a.102.4.2 PDB: 3sqc_A 1ump_A* 1h35_A* 1h36_A* 1h37_A* 1h39_A* 1h3a_A* 1h3b_A* 1h3c_A* 1o6h_A* 1o6q_A* 1gsz_A* 1o79_A* 1sqc_A* 1o6r_A* Length = 631 Back     alignment and structure
>1w6k_A Lanosterol synthase; cyclase, cholesterol, monotopic membrane protein, B-octyl-glucoside, isomerase, steroid biosynthesis; HET: BOG LAN; 2.1A {Homo sapiens} SCOP: a.102.4.2 a.102.4.2 PDB: 1w6j_A* Length = 732 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query358
3dss_B331 Geranylgeranyl transferase type-2 subunit beta; pr 100.0
3dra_B390 Geranylgeranyltransferase type I beta subunit; ger 100.0
1n4q_B377 Geranyltransferase type-I beta subunit; protein ge 100.0
3q7a_B520 Farnesyltransferase beta subunit; protein prenyltr 100.0
2h6f_B437 Protein farnesyltransferase beta subunit; ftase, f 100.0
3dss_B331 Geranylgeranyl transferase type-2 subunit beta; pr 100.0
2h6f_B 437 Protein farnesyltransferase beta subunit; ftase, f 100.0
1n4q_B377 Geranyltransferase type-I beta subunit; protein ge 100.0
3dra_B390 Geranylgeranyltransferase type I beta subunit; ger 100.0
3q7a_B520 Farnesyltransferase beta subunit; protein prenyltr 100.0
2sqc_A631 Squalene-hopene cyclase; isomerase, triterpene cyc 99.92
1w6k_A732 Lanosterol synthase; cyclase, cholesterol, monotop 99.92
2sqc_A631 Squalene-hopene cyclase; isomerase, triterpene cyc 99.88
1w6k_A732 Lanosterol synthase; cyclase, cholesterol, monotop 99.86
2wy7_A310 Complement C3D fragment; immune system, immune res 99.59
1qqf_A277 Protein (complement C3DG); alpha-alpha barrel, imm 99.58
1hzf_A367 Complement factor C4A; alpha-alpha 6 barrel, immun 99.37
1qqf_A277 Protein (complement C3DG); alpha-alpha barrel, imm 99.35
2wy7_A310 Complement C3D fragment; immune system, immune res 99.31
2pn5_A 1325 TEP1R, thioester-containing protein I; FULL-length 99.16
2hr0_B 915 Complement C3 alpha' chain; complement component C 99.14
4acq_A 1451 Alpha-2-macroglobulin; hydrolase inhibitor, protei 99.01
1hzf_A367 Complement factor C4A; alpha-alpha 6 barrel, immun 99.0
2b39_A 1661 C3; thioester, immune defense, immune system; HET: 98.72
1r76_A408 Pectate lyase; A-helical structure; 2.65A {Azospir 98.7
4fxk_B767 Complement C4-A alpha chain; immune system, proteo 98.6
2hr0_B 915 Complement C3 alpha' chain; complement component C 98.58
1gxm_A332 Pectate lyase; mechanism, elimination; 1.32A {Cell 98.5
2pn5_A 1325 TEP1R, thioester-containing protein I; FULL-length 98.47
4acq_A1451 Alpha-2-macroglobulin; hydrolase inhibitor, protei 98.45
3cu7_A 1676 Complement C5; Mg domain, inflammation, anaphylato 98.39
2bb6_A414 TCII, TC II, transcobalamin II; alpha_6 - alpha_6 98.23
1r76_A408 Pectate lyase; A-helical structure; 2.65A {Azospir 98.22
2bb6_A414 TCII, TC II, transcobalamin II; alpha_6 - alpha_6 98.04
4fxk_B767 Complement C4-A alpha chain; immune system, proteo 97.97
3prx_B 1642 Cobra venom factor; immune system, complement, imm 97.93
2b39_A 1661 C3; thioester, immune defense, immune system; HET: 97.89
1gxm_A332 Pectate lyase; mechanism, elimination; 1.32A {Cell 97.82
3cu7_A 1676 Complement C5; Mg domain, inflammation, anaphylato 97.74
3sdr_A 817 Alpha-bisabolene synthase; lyase, terpene synthase 97.56
3p5p_A 764 Taxadiene synthase; class I and II terpene cyclase 97.51
2pmv_A399 Gastric intrinsic factor; cobalamin transport prot 97.46
3s9v_A 785 Abietadiene synthase, chloroplastic; alpha bundle/ 97.24
2pmv_A399 Gastric intrinsic factor; cobalamin transport prot 97.22
3prx_B 1642 Cobra venom factor; immune system, complement, imm 97.13
3pya_A 727 ENT-copalyl diphosphate synthase, chloroplastic; c 96.86
3sdr_A 817 Alpha-bisabolene synthase; lyase, terpene synthase 89.37
3s9v_A 785 Abietadiene synthase, chloroplastic; alpha bundle/ 88.1
3p5p_A 764 Taxadiene synthase; class I and II terpene cyclase 88.02
3pya_A 727 ENT-copalyl diphosphate synthase, chloroplastic; c 81.52
>3dss_B Geranylgeranyl transferase type-2 subunit beta; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1ltx_B* 3c72_B* 1dce_B 3dst_B* 3dsu_B* 3dsv_B* 3dsw_B* 3dsx_B* 3hxb_B* 3hxc_B* 3hxd_B* 3hxe_B* 3hxf_B* 3pz1_B* 3pz2_B* 3pz3_B* 4ehm_B* 4gts_B* 4gtt_B* 4gtv_B* Back     alignment and structure
Probab=100.00  E-value=3.7e-81  Score=601.64  Aligned_cols=317  Identities=63%  Similarity=1.171  Sum_probs=305.5

Q ss_pred             CcccccCCCCccccchHHHHHHHHHhhcCCCCccccccccchHHHHHHHHHHHHHhCCCCCCChHHHHHHHHhcCCCCCc
Q psy15438          1 MRDVDLTDNLPKEFLGTKHAEYIKKYSDNKEDYEYCMSEYLRMSGMYWGITTLSLLDQLDDMPQDTIFDFITQCIHPCGG   80 (358)
Q Consensus         1 ~~~~~~~~~~~~~l~~~~h~~yl~~~~~~~~~~~~~~~~~~~~~~~y~~l~~L~lL~~~~~~~~~~~i~~i~~~q~~dGG   80 (358)
                      .+||+++++.+.+|.++||++||+++....+|.+|+..|++|+|.+||+|++|++|++++..+|+++++||++||+++||
T Consensus         5 ~~~~~~~~~~~~~l~~~~h~~y~~~~~~~~~~~~~~~~d~~r~~~~yw~l~~L~lLg~l~~~~r~~~i~~l~s~Q~~dGG   84 (331)
T 3dss_B            5 QKDVTIKSDAPDTLLLEKHADYIASYGSKKDDYEYCMSEYLRMSGVYWGLTVMDLMGQLHRMNKEEILVFIKSCQHECGG   84 (331)
T ss_dssp             CCCCCCCTTSCCSCCHHHHHHHHHHTTSSSCGGGSGGGGGGHHHHHHHHHHHHHHTTCGGGSCHHHHHHHHHHTBCTTSC
T ss_pred             ccceeCCCCCchhhhHHHHHHHHHHhccCCCCccceeccccHHHHHHHHHHHHHHhCCCchhhHHHHHHHHhhhcCCCCC
Confidence            48999999999999999999999998766778999999999999999999999999988888999999999999999999


Q ss_pred             ccccCCCCCchhHHHHHHHHHHHhcccCCCChHHHHHHHHhcCCCCCCcccccCCCcccchhHHHHHHHHHhCCCChhcH
Q psy15438         81 VSASISHDPHILYTLSAVQIACLINREHELPVDKIVAYVSKLQQPDGSFFGDMYGEVDTRFSFCAVACLSLLGKLDAINL  160 (358)
Q Consensus        81 F~~~~~~~~~~~~Ty~Al~~L~ll~~~~~~~~~~~~~~l~s~Q~~dGgf~~~~~~esd~~~ty~al~~l~ll~~~~~~~~  160 (358)
                      |++.+++++|+.+||+|+++|.+++.++.+|++++++||+++|++||||.+.+++|+|+++||||+++|.++|.++.+++
T Consensus        85 F~g~~g~~~~l~~Ty~Al~~L~~l~~~~~id~~k~~~fL~~~Q~~DGsf~~~~~ge~d~~~ty~Al~~L~llg~~~~~~~  164 (331)
T 3dss_B           85 VSASIGHDPHLLYTLSAVQILTLYDSIHVINVDKVVAYVQSLQKEDGSFAGDIWGEIDTRFSFCAVATLALLGKLDAINV  164 (331)
T ss_dssp             BBSSTTSCBCHHHHHHHHHHHHHTTCGGGSCHHHHHHHHHHTBCTTSCBBSSTTCCBCHHHHHHHHHHHHHHTCGGGSCH
T ss_pred             cCCCCCCCccHHHHHHHHHHHHHcCCccHHHHHHHHHHHhccCCCCCCEecccCCCCchHHHHHHHHHHHhcCCCCHHHH
Confidence            99999999999999999999999998888999999999999999999999999999999999999999999999888899


Q ss_pred             HHHHHHHHhcccCCCCCCCCCCCCCcccHHHHHHHHHHhcccCChhcHHHHHHHHHhcCCCCCcccCCCCCCCChhHHHH
Q psy15438        161 SKAVEFILSCCNFDGGFGSRPGSESHAGLTYCCVGFLSITGHLHEIDADKLAWWLAERQLPSGGLNGRPEKLPDVCYSWW  240 (358)
Q Consensus       161 ~~~v~~L~s~Q~~dGGf~~~pg~esh~~~T~calasL~llg~~~~~~~~~~~~wL~~~Q~~~GGf~gr~~k~~D~cys~w  240 (358)
                      +++++||++||++||||+.+|+.|+|+++||||+++|.++++++.++++++++||.++|.++|||+|||+|++|+|||||
T Consensus       165 ~k~v~~L~s~Q~~dGGfg~~pg~esh~~~T~~al~aL~llg~~~~~~~~~~~~wL~~~Q~~dGGf~gr~~k~~D~cys~w  244 (331)
T 3dss_B          165 EKAIEFVLSCMNFDGGFGCRPGSESHAGQIYCCTGFLAITSQLHQVNSDLLGWWLCERQLPSGGLNGRPEKLPDVCYSWW  244 (331)
T ss_dssp             HHHHHHHHTTBCTTSCBCSSTTCCCCHHHHHHHHHHHHHTTCGGGSCHHHHHHHHHTTBCTTSCBCSSTTCCCCHHHHHH
T ss_pred             HHHHHHHHHhCcCCCCcCCCCCCCCcHHHHHHHHHHHHhccccchhhHHHHHHHHHHhCCCCCCcCCCCCCCCcchhHHH
Confidence            99999999999999999999999999999999999999999988889999999999999999999999999999999999


Q ss_pred             HHHHHHHhCCCCCCCHHHHHHHHHHhcCCCCCccccCCccCCCCCCcccccccccccccccccccccccccCCCCCCCCC
Q psy15438        241 VLASLHMLGRGTWINSAALRKFILASQVRNTFYFEMGVFSDKIPVCGVHYVDYCTQVRNRIEQGCSVRTCISDRPLDIPD  320 (358)
Q Consensus       241 ~~a~L~ll~~~~~~d~~~l~~~ll~~Q~~~~~~~~~GGf~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~D  320 (358)
                      ++++|+++|+.+++|.+++++||++||++     +.|||                                +++|++.||
T Consensus       245 ~l~~L~llg~~~~~~~~~~~~fil~cQ~~-----~~GGf--------------------------------~~~pg~~~d  287 (331)
T 3dss_B          245 VLASLKIIGRLHWIDREKLRSFILACQDE-----ETGGF--------------------------------ADRPGDMVD  287 (331)
T ss_dssp             HHHHHHHTTCGGGSCHHHHHHHHHHTBCT-----TTCCB--------------------------------CSSTTSCCB
T ss_pred             HHHHHHHcCCcchhhHHHHHHHHHHhcCC-----CCCCc--------------------------------CCCCCCCCC
Confidence            99999999998899999999999999998     45999                                899999999


Q ss_pred             hHHHHHHHHHHHhcCCCCCCCCCcCccccCCccccc
Q psy15438        321 PFHTLFGVAALTMLDPPTPDVLPVDPTYCMPVRTFH  356 (358)
Q Consensus       321 ~~hT~~~l~~Ls~~~~~~~~~~~~~~~~~~~~~~~~  356 (358)
                      ++||||+|+||+++++  ++|.+|||+||||.++++
T Consensus       288 ~~hT~~~l~~Ls~~g~--~~l~~~~p~~~~~~~~~~  321 (331)
T 3dss_B          288 PFHTLFGIAGLSLLGE--EQIKPVSPVFCMPEEVLQ  321 (331)
T ss_dssp             HHHHHHHHHHHHHTTC--TTSCCBCTTTSSBHHHHH
T ss_pred             HHHHHHHHHHHHHcCC--CCCCCCCccccCCHHHHH
Confidence            9999999999999998  899999999999988764
>3dra_B Geranylgeranyltransferase type I beta subunit; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} Back     alignment and structure
>1n4q_B Geranyltransferase type-I beta subunit; protein geranylgeranyltransferase type-I, ggtase; HET: MGM GER; 2.40A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1n4p_B* 1n4r_B* 1n4s_B* 1s64_B* 1tnb_B* 1tno_B* 1tnu_B* 1tny_B* 1tnz_B* Back     alignment and structure
>3q7a_B Farnesyltransferase beta subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_B* 3q78_B* 3q79_B* 3q75_B* 3q7f_B* 3sfx_B* 3sfy_B* Back     alignment and structure
>2h6f_B Protein farnesyltransferase beta subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.102.4.3 PDB: 1jcq_B* 1ld7_B* 1mzc_B* 1s63_B* 1sa4_B* 1tn6_B* 2f0y_B* 1ld8_B* 2iej_B* 3e37_B* 2h6h_B* 2h6g_B* 2h6i_B* 1o1t_B* 1o1s_B* 1o1r_B* 3eu5_B* 3pz4_B* 3e33_B* 1d8e_B* ... Back     alignment and structure
>3dss_B Geranylgeranyl transferase type-2 subunit beta; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1ltx_B* 3c72_B* 1dce_B 3dst_B* 3dsu_B* 3dsv_B* 3dsw_B* 3dsx_B* 3hxb_B* 3hxc_B* 3hxd_B* 3hxe_B* 3hxf_B* 3pz1_B* 3pz2_B* 3pz3_B* 4ehm_B* 4gts_B* 4gtt_B* 4gtv_B* Back     alignment and structure
>2h6f_B Protein farnesyltransferase beta subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.102.4.3 PDB: 1jcq_B* 1ld7_B* 1mzc_B* 1s63_B* 1sa4_B* 1tn6_B* 2f0y_B* 1ld8_B* 2iej_B* 3e37_B* 2h6h_B* 2h6g_B* 2h6i_B* 1o1t_B* 1o1s_B* 1o1r_B* 3eu5_B* 3pz4_B* 3e33_B* 1d8e_B* ... Back     alignment and structure
>1n4q_B Geranyltransferase type-I beta subunit; protein geranylgeranyltransferase type-I, ggtase; HET: MGM GER; 2.40A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1n4p_B* 1n4r_B* 1n4s_B* 1s64_B* 1tnb_B* 1tno_B* 1tnu_B* 1tny_B* 1tnz_B* Back     alignment and structure
>3dra_B Geranylgeranyltransferase type I beta subunit; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} Back     alignment and structure
>3q7a_B Farnesyltransferase beta subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_B* 3q78_B* 3q79_B* 3q75_B* 3q7f_B* 3sfx_B* 3sfy_B* Back     alignment and structure
>2sqc_A Squalene-hopene cyclase; isomerase, triterpene cyclase, monotopic membrane protein, QW-sequence, repeat; HET: C8E; 2.00A {Alicyclobacillus acidocaldarius} SCOP: a.102.4.2 a.102.4.2 PDB: 3sqc_A 1ump_A* 1h35_A* 1h36_A* 1h37_A* 1h39_A* 1h3a_A* 1h3b_A* 1h3c_A* 1o6h_A* 1o6q_A* 1gsz_A* 1o79_A* 1sqc_A* 1o6r_A* Back     alignment and structure
>1w6k_A Lanosterol synthase; cyclase, cholesterol, monotopic membrane protein, B-octyl-glucoside, isomerase, steroid biosynthesis; HET: BOG LAN; 2.1A {Homo sapiens} SCOP: a.102.4.2 a.102.4.2 PDB: 1w6j_A* Back     alignment and structure
>2sqc_A Squalene-hopene cyclase; isomerase, triterpene cyclase, monotopic membrane protein, QW-sequence, repeat; HET: C8E; 2.00A {Alicyclobacillus acidocaldarius} SCOP: a.102.4.2 a.102.4.2 PDB: 3sqc_A 1ump_A* 1h35_A* 1h36_A* 1h37_A* 1h39_A* 1h3a_A* 1h3b_A* 1h3c_A* 1o6h_A* 1o6q_A* 1gsz_A* 1o79_A* 1sqc_A* 1o6r_A* Back     alignment and structure
>1w6k_A Lanosterol synthase; cyclase, cholesterol, monotopic membrane protein, B-octyl-glucoside, isomerase, steroid biosynthesis; HET: BOG LAN; 2.1A {Homo sapiens} SCOP: a.102.4.2 a.102.4.2 PDB: 1w6j_A* Back     alignment and structure
>2wy7_A Complement C3D fragment; immune system, immune response, innate immunity, complement inflammatory response; 1.70A {Homo sapiens} PDB: 2wy8_A 3oed_A 3oxu_A 3rj3_A 1ghq_A* 1w2s_A Back     alignment and structure
>1qqf_A Protein (complement C3DG); alpha-alpha barrel, immune system; 1.45A {Rattus norvegicus} SCOP: a.102.4.4 PDB: 1qsj_A 3d5r_A 2noj_A 2gox_A 3d5s_A 1c3d_A 2xqw_A Back     alignment and structure
>1hzf_A Complement factor C4A; alpha-alpha 6 barrel, immune system; 2.30A {Homo sapiens} SCOP: a.102.4.4 Back     alignment and structure
>1qqf_A Protein (complement C3DG); alpha-alpha barrel, immune system; 1.45A {Rattus norvegicus} SCOP: a.102.4.4 PDB: 1qsj_A 3d5r_A 2noj_A 2gox_A 3d5s_A 1c3d_A 2xqw_A Back     alignment and structure
>2wy7_A Complement C3D fragment; immune system, immune response, innate immunity, complement inflammatory response; 1.70A {Homo sapiens} PDB: 2wy8_A 3oed_A 3oxu_A 3rj3_A 1ghq_A* 1w2s_A Back     alignment and structure
>2pn5_A TEP1R, thioester-containing protein I; FULL-length mature peptide, immune system; HET: NAG; 2.70A {Anopheles gambiae} Back     alignment and structure
>2hr0_B Complement C3 alpha' chain; complement component C3B, immune system; HET: THC; 2.26A {Homo sapiens} PDB: 2icf_B* 2wii_B* 2win_B* 3g6j_B 3l5n_B* 2a73_B* 2i07_B* 2xwj_B* 2xwb_B* 2a74_C* 2ice_C* 2qki_C* 3l3o_F* 3nms_C* 3nsa_C* 3ohx_C* 3t4a_C 2ice_B* 3l3o_B* 3nms_B* ... Back     alignment and structure
>4acq_A Alpha-2-macroglobulin; hydrolase inhibitor, proteinase inhibitor, irreversible PROT inhibitor, conformational change, blood plasma inhibitor; HET: MEQ NAG MAN; 4.30A {Homo sapiens} Back     alignment and structure
>1hzf_A Complement factor C4A; alpha-alpha 6 barrel, immune system; 2.30A {Homo sapiens} SCOP: a.102.4.4 Back     alignment and structure
>2b39_A C3; thioester, immune defense, immune system; HET: NAG BMA; 3.00A {Bos taurus} Back     alignment and structure
>1r76_A Pectate lyase; A-helical structure; 2.65A {Azospirillum irakense} SCOP: a.102.5.1 Back     alignment and structure
>4fxk_B Complement C4-A alpha chain; immune system, proteolytic cascade; HET: NAG BMA; 3.60A {Homo sapiens} PDB: 4fxg_B* Back     alignment and structure
>2hr0_B Complement C3 alpha' chain; complement component C3B, immune system; HET: THC; 2.26A {Homo sapiens} PDB: 2icf_B* 2wii_B* 2win_B* 3g6j_B 3l5n_B* 2a73_B* 2i07_B* 2xwj_B* 2xwb_B* 2a74_C* 2ice_C* 2qki_C* 3l3o_F* 3nms_C* 3nsa_C* 3ohx_C* 3t4a_C 2ice_B* 3l3o_B* 3nms_B* ... Back     alignment and structure
>1gxm_A Pectate lyase; mechanism, elimination; 1.32A {Cellvibrio cellulosa} SCOP: a.102.5.1 PDB: 1gxn_A 1gxo_A* Back     alignment and structure
>2pn5_A TEP1R, thioester-containing protein I; FULL-length mature peptide, immune system; HET: NAG; 2.70A {Anopheles gambiae} Back     alignment and structure
>4acq_A Alpha-2-macroglobulin; hydrolase inhibitor, proteinase inhibitor, irreversible PROT inhibitor, conformational change, blood plasma inhibitor; HET: MEQ NAG MAN; 4.30A {Homo sapiens} Back     alignment and structure
>3cu7_A Complement C5; Mg domain, inflammation, anaphylatoxin, cleavage of basic residues, complement alternate pathway, glycoprotein, immune response; HET: NAG; 3.10A {Homo sapiens} PDB: 3kls_A* 3km9_A* 4e0s_A* 3prx_A* 3pvm_A* 4a5w_A* 1xwe_A Back     alignment and structure
>2bb6_A TCII, TC II, transcobalamin II; alpha_6 - alpha_6 barrel, transport protein; HET: B12; 2.00A {Bos taurus} PDB: 2bbc_A* 2v3n_A* 2v3p_A* 2bb5_A* Back     alignment and structure
>1r76_A Pectate lyase; A-helical structure; 2.65A {Azospirillum irakense} SCOP: a.102.5.1 Back     alignment and structure
>2bb6_A TCII, TC II, transcobalamin II; alpha_6 - alpha_6 barrel, transport protein; HET: B12; 2.00A {Bos taurus} PDB: 2bbc_A* 2v3n_A* 2v3p_A* 2bb5_A* Back     alignment and structure
>4fxk_B Complement C4-A alpha chain; immune system, proteolytic cascade; HET: NAG BMA; 3.60A {Homo sapiens} PDB: 4fxg_B* Back     alignment and structure
>3prx_B Cobra venom factor; immune system, complement, immune SYS complex; HET: NAG; 4.30A {Naja kaouthia} PDB: 3pvm_B* Back     alignment and structure
>2b39_A C3; thioester, immune defense, immune system; HET: NAG BMA; 3.00A {Bos taurus} Back     alignment and structure
>1gxm_A Pectate lyase; mechanism, elimination; 1.32A {Cellvibrio cellulosa} SCOP: a.102.5.1 PDB: 1gxn_A 1gxo_A* Back     alignment and structure
>3cu7_A Complement C5; Mg domain, inflammation, anaphylatoxin, cleavage of basic residues, complement alternate pathway, glycoprotein, immune response; HET: NAG; 3.10A {Homo sapiens} PDB: 3kls_A* 3km9_A* 4e0s_A* 3prx_A* 3pvm_A* 4a5w_A* 1xwe_A Back     alignment and structure
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A* Back     alignment and structure
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A* Back     alignment and structure
>2pmv_A Gastric intrinsic factor; cobalamin transport protein alpha6-alpha6 motif two domain P transport protein; HET: NAG B12; 2.60A {Homo sapiens} PDB: 3kq4_A* Back     alignment and structure
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis} Back     alignment and structure
>2pmv_A Gastric intrinsic factor; cobalamin transport protein alpha6-alpha6 motif two domain P transport protein; HET: NAG B12; 2.60A {Homo sapiens} PDB: 3kq4_A* Back     alignment and structure
>3prx_B Cobra venom factor; immune system, complement, immune SYS complex; HET: NAG; 4.30A {Naja kaouthia} PDB: 3pvm_B* Back     alignment and structure
>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A* Back     alignment and structure
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A* Back     alignment and structure
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis} Back     alignment and structure
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A* Back     alignment and structure
>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 358
d3dssb1325 a.102.4.3 (B:7-331) Rab geranylgeranyltransferase, 1e-114
d1n4qb_346 a.102.4.3 (B:) Protein farnesyltransferase, beta-s 3e-90
d2h6fb1401 a.102.4.3 (B:521-921) Protein farnesyltransferase, 4e-87
d2sqca1352 a.102.4.2 (A:8-36,A:308-630) Squalene-hopene cycla 3e-11
d1w6ka1448 a.102.4.2 (A:6-99,A:379-732) Lanosterol synthase { 3e-06
d1w6ka1448 a.102.4.2 (A:6-99,A:379-732) Lanosterol synthase { 5e-04
>d3dssb1 a.102.4.3 (B:7-331) Rab geranylgeranyltransferase, beta subunit {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 325 Back     information, alignment and structure

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Protein prenyltransferases
domain: Rab geranylgeranyltransferase, beta subunit
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  333 bits (856), Expect = e-114
 Identities = 199/353 (56%), Positives = 237/353 (67%), Gaps = 39/353 (11%)

Query: 3   DVDLTDNLPKEFLGTKHAEYIKKYSDNKEDYEYCMSEYLRMSGMYWGITTLSLLDQLDDM 62
           DV +  + P   L  KHA+YI  Y   K+DYEYCMSEYLRMSG+YWG+T + L+ QL  M
Sbjct: 1   DVTIKSDAPDTLLLEKHADYIASYGSKKDDYEYCMSEYLRMSGVYWGLTVMDLMGQLHRM 60

Query: 63  PQDTIFDFITQCIHPCGGVSASISHDPHILYTLSAVQIACLINREHELPVDKIVAYVSKL 122
            ++ I  FI  C H CGGVSASI HDPH+LYTLSAVQI  L +  H + VDK+VAYV  L
Sbjct: 61  NKEEILVFIKSCQHECGGVSASIGHDPHLLYTLSAVQILTLYDSIHVINVDKVVAYVQSL 120

Query: 123 QQPDGSFFGDMYGEVDTRFSFCAVACLSLLGKLDAINLSKAVEFILSCCNFDGGFGSRPG 182
           Q+ DGSF GD++GE+DTRFSFCAVA L+LLGKLDAIN+ KA+EF+LSC NFDGGFG RPG
Sbjct: 121 QKEDGSFAGDIWGEIDTRFSFCAVATLALLGKLDAINVEKAIEFVLSCMNFDGGFGCRPG 180

Query: 183 SESHAGLTYCCVGFLSITGHLHEIDADKLAWWLAERQLPSGGLNGRPEKLPDVCYSWWVL 242
           SESHAG  YCC GFL+IT  LH++++D L WWL ERQLPSGGLNGRPEKLPDVCYSWWVL
Sbjct: 181 SESHAGQIYCCTGFLAITSQLHQVNSDLLGWWLCERQLPSGGLNGRPEKLPDVCYSWWVL 240

Query: 243 ASLHMLGRGTWINSAALRKFILASQVRNTFYFEMGVFSDKIPVCGVHYVDYCTQVRNRIE 302
           ASL ++GR  WI+   LR FILA Q       E G F+D+                    
Sbjct: 241 ASLKIIGRLHWIDREKLRSFILACQ-----DEETGGFADR-------------------- 275

Query: 303 QGCSVRTCISDRPLDIPDPFHTLFGVAALTMLDPPTPDVLPVDPTYCMPVRTF 355
                       P D+ DPFHTLFG+A L++L      + PV P +CMP    
Sbjct: 276 ------------PGDMVDPFHTLFGIAGLSLLG--EEQIKPVSPVFCMPEEVL 314
>d1n4qb_ a.102.4.3 (B:) Protein farnesyltransferase, beta-subunit {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 346 Back     information, alignment and structure
>d2h6fb1 a.102.4.3 (B:521-921) Protein farnesyltransferase, beta-subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 401 Back     information, alignment and structure
>d2sqca1 a.102.4.2 (A:8-36,A:308-630) Squalene-hopene cyclase {Alicyclobacillus acidocaldarius [TaxId: 405212]} Length = 352 Back     information, alignment and structure
>d1w6ka1 a.102.4.2 (A:6-99,A:379-732) Lanosterol synthase {Human (Homo sapiens) [TaxId: 9606]} Length = 448 Back     information, alignment and structure
>d1w6ka1 a.102.4.2 (A:6-99,A:379-732) Lanosterol synthase {Human (Homo sapiens) [TaxId: 9606]} Length = 448 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query358
d3dssb1325 Rab geranylgeranyltransferase, beta subunit {Rat ( 100.0
d2h6fb1401 Protein farnesyltransferase, beta-subunit {Human ( 100.0
d1n4qb_346 Protein farnesyltransferase, beta-subunit {Rat (Ra 100.0
d3dssb1325 Rab geranylgeranyltransferase, beta subunit {Rat ( 100.0
d1n4qb_346 Protein farnesyltransferase, beta-subunit {Rat (Ra 100.0
d2h6fb1401 Protein farnesyltransferase, beta-subunit {Human ( 100.0
d2sqca1352 Squalene-hopene cyclase {Alicyclobacillus acidocal 99.93
d1w6ka1448 Lanosterol synthase {Human (Homo sapiens) [TaxId: 99.86
d2sqca1352 Squalene-hopene cyclase {Alicyclobacillus acidocal 99.84
d1w6ka1448 Lanosterol synthase {Human (Homo sapiens) [TaxId: 99.8
d2sqca2271 Squalene-hopene cyclase {Alicyclobacillus acidocal 99.4
d2sqca2271 Squalene-hopene cyclase {Alicyclobacillus acidocal 99.15
d1hzfa_326 C4adg fragment of complement factor C4a {Human (Ho 98.71
d1r76a_408 Polygalacturonic acid lyase (pectate lyase) {Azosp 98.55
d1gxma_324 Polygalacturonic acid lyase (pectate lyase) {Cellv 98.39
d1c3da_294 C3D, a C3 fragment and ligand for complement recep 98.36
d1w6ka2279 Lanosterol synthase {Human (Homo sapiens) [TaxId: 98.28
d1r76a_408 Polygalacturonic acid lyase (pectate lyase) {Azosp 97.97
d1w6ka2279 Lanosterol synthase {Human (Homo sapiens) [TaxId: 97.91
d1hzfa_326 C4adg fragment of complement factor C4a {Human (Ho 97.81
d1c3da_294 C3D, a C3 fragment and ligand for complement recep 97.67
d1gxma_324 Polygalacturonic acid lyase (pectate lyase) {Cellv 97.57
>d3dssb1 a.102.4.3 (B:7-331) Rab geranylgeranyltransferase, beta subunit {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Protein prenyltransferases
domain: Rab geranylgeranyltransferase, beta subunit
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=3.3e-82  Score=605.84  Aligned_cols=315  Identities=63%  Similarity=1.177  Sum_probs=304.3

Q ss_pred             ccccCCCCccccchHHHHHHHHHhhcCCCCccccccccchHHHHHHHHHHHHHhCCCCCCChHHHHHHHHhcCCCCCccc
Q psy15438          3 DVDLTDNLPKEFLGTKHAEYIKKYSDNKEDYEYCMSEYLRMSGMYWGITTLSLLDQLDDMPQDTIFDFITQCIHPCGGVS   82 (358)
Q Consensus         3 ~~~~~~~~~~~l~~~~h~~yl~~~~~~~~~~~~~~~~~~~~~~~y~~l~~L~lL~~~~~~~~~~~i~~i~~~q~~dGGF~   82 (358)
                      ||+++++.+.+|.++||++||+++..+.+++.|+..|++|++++||+|++|++|++++..+++++++||++||+++|||+
T Consensus         1 ~~~~~~~~~~~l~~~~H~~y~~~~~~~~~~~~~~~~d~~r~~~~yw~l~sL~lLg~l~~~~~~~~i~~L~s~Q~~dGGf~   80 (325)
T d3dssb1           1 DVTIKSDAPDTLLLEKHADYIASYGSKKDDYEYCMSEYLRMSGVYWGLTVMDLMGQLHRMNKEEILVFIKSCQHECGGVS   80 (325)
T ss_dssp             CCCCCTTSCCSCCHHHHHHHHHHTTSSSCGGGSGGGGGGHHHHHHHHHHHHHHTTCGGGSCHHHHHHHHHHTBCTTSCBB
T ss_pred             CCCCCCCCchHHHHHHHHHHHHHhcccCCCccceehhhhHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCCCCCcC
Confidence            89999999999999999999999887777888999999999999999999999999888899999999999999999999


Q ss_pred             ccCCCCCchhHHHHHHHHHHHhcccCCCChHHHHHHHHhcCCCCCCcccccCCCcccchhHHHHHHHHHhCCCChhcHHH
Q psy15438         83 ASISHDPHILYTLSAVQIACLINREHELPVDKIVAYVSKLQQPDGSFFGDMYGEVDTRFSFCAVACLSLLGKLDAINLSK  162 (358)
Q Consensus        83 ~~~~~~~~~~~Ty~Al~~L~ll~~~~~~~~~~~~~~l~s~Q~~dGgf~~~~~~esd~~~ty~al~~l~ll~~~~~~~~~~  162 (358)
                      +.+++.+|+.+||+|+++|.+++..+.+|++++++||+++|++||||...+++++|+|+||||+++++++|..+.+++++
T Consensus        81 g~~~~~~~l~~T~~al~~L~l~~~~~~~dr~~i~~~L~s~Q~~DGsf~~~~~~e~D~r~ty~Al~~l~ll~~~~~~~~~~  160 (325)
T d3dssb1          81 ASIGHDPHLLYTLSAVQILTLYDSIHVINVDKVVAYVQSLQKEDGSFAGDIWGEIDTRFSFCAVATLALLGKLDAINVEK  160 (325)
T ss_dssp             SSTTSCBCHHHHHHHHHHHHHTTCGGGSCHHHHHHHHHHTBCTTSCBBSSTTCCBCHHHHHHHHHHHHHHTCGGGSCHHH
T ss_pred             CCCCCcccHHHHHHHHHHHHhhccccccCHHHHHHHHHHhhCcCCCCccCCCCCccHHHHHHHHHHHHHcCCCchhhHHH
Confidence            99999999999999999999999888899999999999999999999999999999999999999999999888899999


Q ss_pred             HHHHHHhcccCCCCCCCCCCCCCcccHHHHHHHHHHhcccCChhcHHHHHHHHHhcCCCCCcccCCCCCCCChhHHHHHH
Q psy15438        163 AVEFILSCCNFDGGFGSRPGSESHAGLTYCCVGFLSITGHLHEIDADKLAWWLAERQLPSGGLNGRPEKLPDVCYSWWVL  242 (358)
Q Consensus       163 ~v~~L~s~Q~~dGGf~~~pg~esh~~~T~calasL~llg~~~~~~~~~~~~wL~~~Q~~~GGf~gr~~k~~D~cys~w~~  242 (358)
                      +++||++||++||||+..|+.|+|+++||||+++|++++.++.++.+++++||.+||.++|||+|||||.+|+|||||++
T Consensus       161 ~~~~i~scQn~DGGfg~~p~~Esh~g~T~cavasL~ll~~l~~~~~~~l~~wL~~rQ~~~GGf~GR~~K~~D~cys~W~~  240 (325)
T d3dssb1         161 AIEFVLSCMNFDGGFGCRPGSESHAGQIYCCTGFLAITSQLHQVNSDLLGWWLCERQLPSGGLNGRPEKLPDVCYSWWVL  240 (325)
T ss_dssp             HHHHHHTTBCTTSCBCSSTTCCCCHHHHHHHHHHHHHTTCGGGSCHHHHHHHHHTTBCTTSCBCSSTTCCCCHHHHHHHH
T ss_pred             HHHHHHHhcCCcCCccccCCCCCCcchhHHHHHHHHHhcccccccHHHHHHHHHHhCCCCCCcCCCCCCCCchHHHHHHH
Confidence            99999999999999999999999999999999999999998888999999999999999999999999999999999999


Q ss_pred             HHHHHhCCCCCCCHHHHHHHHHHhcCCCCCccccCCccCCCCCCcccccccccccccccccccccccccCCCCCCCCChH
Q psy15438        243 ASLHMLGRGTWINSAALRKFILASQVRNTFYFEMGVFSDKIPVCGVHYVDYCTQVRNRIEQGCSVRTCISDRPLDIPDPF  322 (358)
Q Consensus       243 a~L~ll~~~~~~d~~~l~~~ll~~Q~~~~~~~~~GGf~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~D~~  322 (358)
                      ++|.+|+..+++|.+++++||++||+.     +.|||                                +|+|++.||+|
T Consensus       241 ~~l~~L~~~~~~d~~~l~~yil~~~q~-----~~GGf--------------------------------~~~p~~~pD~~  283 (325)
T d3dssb1         241 ASLKIIGRLHWIDREKLRSFILACQDE-----ETGGF--------------------------------ADRPGDMVDPF  283 (325)
T ss_dssp             HHHHHTTCGGGSCHHHHHHHHHHTBCT-----TTCCB--------------------------------CSSTTSCCBHH
T ss_pred             HHHHHcCccccccHHHHHHHHHHHcCC-----CCCCc--------------------------------CCCCCCCCChH
Confidence            999999999999999999999999887     57999                                99999999999


Q ss_pred             HHHHHHHHHHhcCCCCCCCCCcCccccCCccccc
Q psy15438        323 HTLFGVAALTMLDPPTPDVLPVDPTYCMPVRTFH  356 (358)
Q Consensus       323 hT~~~l~~Ls~~~~~~~~~~~~~~~~~~~~~~~~  356 (358)
                      ||||+|+||||+++  +.+.+|||+||||+++++
T Consensus       284 HT~y~l~gLsl~~~--~~l~~~~p~~~i~~~~~~  315 (325)
T d3dssb1         284 HTLFGIAGLSLLGE--EQIKPVSPVFCMPEEVLQ  315 (325)
T ss_dssp             HHHHHHHHHHHTTC--TTSCCBCTTTSSBHHHHH
T ss_pred             HHHHHHHHHHHCCC--CCCCCCCCcccCCHHHHH
Confidence            99999999999999  899999999999998764
>d2h6fb1 a.102.4.3 (B:521-921) Protein farnesyltransferase, beta-subunit {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1n4qb_ a.102.4.3 (B:) Protein farnesyltransferase, beta-subunit {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d3dssb1 a.102.4.3 (B:7-331) Rab geranylgeranyltransferase, beta subunit {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1n4qb_ a.102.4.3 (B:) Protein farnesyltransferase, beta-subunit {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d2h6fb1 a.102.4.3 (B:521-921) Protein farnesyltransferase, beta-subunit {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2sqca1 a.102.4.2 (A:8-36,A:308-630) Squalene-hopene cyclase {Alicyclobacillus acidocaldarius [TaxId: 405212]} Back     information, alignment and structure
>d1w6ka1 a.102.4.2 (A:6-99,A:379-732) Lanosterol synthase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2sqca1 a.102.4.2 (A:8-36,A:308-630) Squalene-hopene cyclase {Alicyclobacillus acidocaldarius [TaxId: 405212]} Back     information, alignment and structure
>d1w6ka1 a.102.4.2 (A:6-99,A:379-732) Lanosterol synthase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2sqca2 a.102.4.2 (A:37-307) Squalene-hopene cyclase {Alicyclobacillus acidocaldarius [TaxId: 405212]} Back     information, alignment and structure
>d2sqca2 a.102.4.2 (A:37-307) Squalene-hopene cyclase {Alicyclobacillus acidocaldarius [TaxId: 405212]} Back     information, alignment and structure
>d1hzfa_ a.102.4.4 (A:) C4adg fragment of complement factor C4a {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1r76a_ a.102.5.1 (A:) Polygalacturonic acid lyase (pectate lyase) {Azospirillum irakense [TaxId: 34011]} Back     information, alignment and structure
>d1gxma_ a.102.5.1 (A:) Polygalacturonic acid lyase (pectate lyase) {Cellvibrio cellulosa [TaxId: 155077]} Back     information, alignment and structure
>d1c3da_ a.102.4.4 (A:) C3D, a C3 fragment and ligand for complement receptor 2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1w6ka2 a.102.4.2 (A:100-378) Lanosterol synthase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1r76a_ a.102.5.1 (A:) Polygalacturonic acid lyase (pectate lyase) {Azospirillum irakense [TaxId: 34011]} Back     information, alignment and structure
>d1w6ka2 a.102.4.2 (A:100-378) Lanosterol synthase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1hzfa_ a.102.4.4 (A:) C4adg fragment of complement factor C4a {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1c3da_ a.102.4.4 (A:) C3D, a C3 fragment and ligand for complement receptor 2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1gxma_ a.102.5.1 (A:) Polygalacturonic acid lyase (pectate lyase) {Cellvibrio cellulosa [TaxId: 155077]} Back     information, alignment and structure