Psyllid ID: psy1551

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190
Protein Sequence
MKEMETAPVIPESEVWDVWIPPQRQFSLSRICCEEEGTEENKDEKPVDPAKDRRNPVPVEISIRYLASEAYQKCYGDEPVWKYYRRNHKGMFAPKKTRKTCIRSGIIATGNPCPICRDEYLIIHPYNIKLLEQFISPVNGEILSYMKTGVCQKQHLKLLVAITQAKNKGLITFDLPFREYNYKDYFPTSV
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcHHHHHHHHcccccHHHHHHcccccccccccccccccccccccccccccccccccccccccHHHHHHHccccccEEcccccccccHHHHHHHHHHHHHHHHccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccHHHHccccccHcccHHHHccccccHccccccccccccccccccccccccHHHcccHHHHHHHccccHHHHHHHcccccccccccccHHEccccEcccccccccccccEEEEcccHHHHHHHcccccccEcccccccHHHHHHHHHHHHHHHHHHcccccEEcccccccHHHcccccc
Coil and Loop (DISEMBL)
mkemetapvipesevwdvwippqrqfslsricceeegteenkdekpvdpakdrrnpvpvEISIRYLASEAYqkcygdepvwkyyrrnhkgmfapkktrktcirsgiiatgnpcpicrdeyliihpYNIKLLEQFISPVNGEILSYMKTGVCQKQHLKLLVAITQAKnkglitfdlpfreynykdyfptsv
Flexible Loop (DISEMBL)
mkemetapvipesevwdvwippqRQFSLSRICCEEegteenkdekpvdpakdrrnpvpVEISIRYLASEAYQKCYGDEPVWKYYRrnhkgmfapkktrktCIRSGIIATGNPCPICRDEYLIIHPYNIKLLEQFISPVNGEILSYMKTGVCQKQHLKLLVAITQAKNkglitfdlpfreynykdyfptsv
Low Complexity Region (SEG)
MKEMETAPVIPESEVWDVWIPPQRQFSLSRICCeeegteenkdeKPVDPAKDRRNPVPVEISIRYLASEAYQKCYGDEPVWKYYRRNHKGMFAPKKTRKTCIRSGIIATGNPCPICRDEYLIIHPYNIKLLEQFISPVNGEILSYMKTGVCQKQHLKLLVAITQAKNKGLITFDLPFREYNYKDYFPTSV
Disordered region (IsUnstruct)
************SEVWDVWIPPQRQFSLSRICC************************PVEISIRYLASEAYQKCYGDEPVWKYYRRNHKGMFAPKKTRKTCIRSGIIATGNPCPICRDEYLIIHPYNIKLLEQFISPVNGEILSYMKTGVCQKQHLKLLVAITQAKNKGLITFDLPFREYNYKDYF****
Disordered Region (DISOPRED)
******A***PESEVWDVWIPPQRQFSL*************************RNPVPVEISIRYLASEAYQKCYGDEPVWKY*****************************CPICRDEYLIIHPYNIKLLEQFISPVNGEILSYMKTGVCQKQHLKLLVAITQAKNKGLITFDLPFREYNYK*YFP***
Disordered Region (DISEMBL)
********VIPESEVWDVWIPPQRQFSLSRICCE****************KDRRNPVPVEISIRYLASEAYQKCYGDEPVWKYYRRNHKGMFAPKKTRKTCIRSGIIATGNPCPICRDEYLIIHPYNIKLLEQFISPVNGEILSYMKTGVCQKQHLKLLVAITQAKNKGLITFDLPFREYNYKDYFPTSV
Disordered Region (DISPRO)
*******PVIPESEVWDVWIPPQRQFSLSRICCEE*********KPVDPAKDRRNPVPVEISIRYLASEAYQKCYGDEPVWKYYRRNHKGMFAPKKTRKTCIRSGIIATGNPCPICRDEYLIIHPYNIKLLEQFISPVNGEILSYMKTGVCQKQHLKLLVAITQAKNKGLITFDLPFREYNYKDYFPT**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKEMETAPVIPESEVWDVWIPPQRQFSLSRICCEEEGTEENKDEKPVDPAKDRRNPVPVEISIRYLASEAYQKCYGDEPVWKYYRRNHKGMFAPKKTRKTCIRSGIIATGNPCPICRDEYLIIHPYNIKLLEQFISPVNGEILSYMKTGVCQKQHLKLLVAITQAKNKGLITFDLPFREYNYKDYFPTSV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	190	2.2.26 [Sep-21-2011]
Q5TM62	258	28S ribosomal protein S18	yes	N/A	0.8	0.589	0.434	1e-30
Q1XHY1	258	28S ribosomal protein S18	yes	N/A	0.8	0.589	0.428	3e-29
Q767K8	258	28S ribosomal protein S18	yes	N/A	0.815	0.600	0.426	4e-29
Q9Y676	258	28S ribosomal protein S18	yes	N/A	0.752	0.554	0.440	5e-29
Q99N84	254	28S ribosomal protein S18	yes	N/A	0.8	0.598	0.428	1e-27
P82918	258	28S ribosomal protein S18	yes	N/A	0.8	0.589	0.409	7e-27

>sp|Q5TM62|RT18B_MACMU 28S ribosomal protein S18b, mitochondrial OS=Macaca mulatta GN=MRPS18B PE=3 SV=1

 Score =  132 bits (333), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 70/161 (43%), Positives = 93/161 (57%), Gaps = 9/161 (5%)

Query: 25  QFSLSRICCEEEGTEENKDEKPVDPAKDRRNPVPVEISIRYLASEAYQKCYGDEPVWKYY 84
           Q  L  +C +    E++    P+ P KD           +YL SE YQ+ YG  PVW  Y
Sbjct: 26  QVPLQTLCTKPPSEEDSLSPVPISPYKDE--------PWKYLESEEYQERYGSRPVWADY 77

Query: 85  RRNHKGMFAPKKTRKTCIRSGIIATGNPCPICRDEYLIIHPYNIKLLEQFISPVNGEILS 144
           RRNHKG   P++TRKTCIR   +A GNPCPICRD  L +   N+KLLEQF+    G I  
Sbjct: 78  RRNHKGGVPPQRTRKTCIRGNKVA-GNPCPICRDHKLHVDFRNVKLLEQFVCAHTGIIFH 136

Query: 145 YMKTGVCQKQHLKLLVAITQAKNKGLITFDLPFREYNYKDY 185
            + TGVC KQH +L  AI +A++ GL+ + +P  E   +D+
Sbjct: 137 SLYTGVCVKQHKRLTQAIQKARDHGLLIYHIPQVEPRDRDF 177

Macaca mulatta (taxid: 9544)

>sp|Q1XHY1|RT18B_PANTR 28S ribosomal protein S18b, mitochondrial OS=Pan troglodytes GN=MRPS18B PE=3 SV=1

 Score =  128 bits (321), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 69/161 (42%), Positives = 90/161 (55%), Gaps = 9/161 (5%)

Query: 25  QFSLSRICCEEEGTEENKDEKPVDPAKDRRNPVPVEISIRYLASEAYQKCYGDEPVWKYY 84
           Q  L  +C +    E++    P+ P KD           +YL SE YQ+ YG  PVW  Y
Sbjct: 26  QVPLQTLCTKAPSEEDSLSSVPISPYKDE--------PWKYLESEEYQERYGSRPVWADY 77

Query: 85  RRNHKGMFAPKKTRKTCIRSGIIATGNPCPICRDEYLIIHPYNIKLLEQFISPVNGEILS 144
           RRNHKG   P++TRKTCIR   +  GNPCPICRD  L +   N+KLLEQF+    G I  
Sbjct: 78  RRNHKGGVPPQRTRKTCIRRNKV-VGNPCPICRDHKLHVDFRNVKLLEQFVCAHTGIIFH 136

Query: 145 YMKTGVCQKQHLKLLVAITQAKNKGLITFDLPFREYNYKDY 185
              TGVC KQH +L  AI +A++ GL+ + +P  E    D+
Sbjct: 137 APYTGVCVKQHKRLTQAIQKARDHGLLIYHIPQVEPRDLDF 177

Pan troglodytes (taxid: 9598)

>sp|Q767K8|RT18B_PIG 28S ribosomal protein S18b, mitochondrial OS=Sus scrofa GN=MRPS18B PE=2 SV=1

 Score =  127 bits (320), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 70/164 (42%), Positives = 92/164 (56%), Gaps = 9/164 (5%)

Query: 25  QFSLSRICCEEEGTEENKDEKPVDPAKDRRNPVPVEISIRYLASEAYQKCYGDEPVWKYY 84
           Q  L  +C +    +++  + P+ P KD           +YL SE YQ  YG  PVW  Y
Sbjct: 26  QVLLQTLCTKAPPEDDSLPQVPISPYKDE--------PWKYLDSEEYQNRYGSRPVWADY 77

Query: 85  RRNHKGMFAPKKTRKTCIRSGIIATGNPCPICRDEYLIIHPYNIKLLEQFISPVNGEILS 144
           RRNHKG   P++TRK CIR   +A GNPCPICRD+ L +   N+KLLEQF+    G I  
Sbjct: 78  RRNHKGGIPPQRTRKMCIRGNKVA-GNPCPICRDQKLHVDFRNVKLLEQFVCAHTGIIFH 136

Query: 145 YMKTGVCQKQHLKLLVAITQAKNKGLITFDLPFREYNYKDYFPT 188
              TGVC KQH KL  AI +A++ GL+ + +P  E    D+  T
Sbjct: 137 APYTGVCMKQHKKLTQAIQKARDHGLLRYHIPQVEPRDLDFSTT 180

Sus scrofa (taxid: 9823)

>sp|Q9Y676|RT18B_HUMAN 28S ribosomal protein S18b, mitochondrial OS=Homo sapiens GN=MRPS18B PE=1 SV=1

 Score =  127 bits (319), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 67/152 (44%), Positives = 87/152 (57%), Gaps = 9/152 (5%)

Query: 25  QFSLSRICCEEEGTEENKDEKPVDPAKDRRNPVPVEISIRYLASEAYQKCYGDEPVWKYY 84
           Q  L  +C +    E++    P+ P KD           +YL SE YQ+ YG  PVW  Y
Sbjct: 26  QVPLQTLCTKAPSEEDSLSSVPISPYKDE--------PWKYLESEEYQERYGSRPVWADY 77

Query: 85  RRNHKGMFAPKKTRKTCIRSGIIATGNPCPICRDEYLIIHPYNIKLLEQFISPVNGEILS 144
           RRNHKG   P++TRKTCIR   +  GNPCPICRD  L +   N+KLLEQF+    G I  
Sbjct: 78  RRNHKGGVPPQRTRKTCIRRNKV-VGNPCPICRDHKLHVDFRNVKLLEQFVCAHTGIIFY 136

Query: 145 YMKTGVCQKQHLKLLVAITQAKNKGLITFDLP 176
              TGVC KQH +L  AI +A++ GL+ + +P
Sbjct: 137 APYTGVCVKQHKRLTQAIQKARDHGLLIYHIP 168

Homo sapiens (taxid: 9606)

>sp|Q99N84|RT18B_MOUSE 28S ribosomal protein S18b, mitochondrial OS=Mus musculus GN=Mrps18b PE=2 SV=1

 Score =  122 bits (306), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 69/161 (42%), Positives = 87/161 (54%), Gaps = 9/161 (5%)

Query: 25  QFSLSRICCEEEGTEENKDEKPVDPAKDRRNPVPVEISIRYLASEAYQKCYGDEPVWKYY 84
           Q  L  +C      E+     PV P +            +YL SE Y   YG  PVW  Y
Sbjct: 24  QVPLQTLCTRGPPEEDAPSSLPVSPYESE--------PWKYLDSEEYHNRYGSRPVWADY 75

Query: 85  RRNHKGMFAPKKTRKTCIRSGIIATGNPCPICRDEYLIIHPYNIKLLEQFISPVNGEILS 144
           RRNHKG   P++TRKTCIR+  +A GNPCPICRD  L +   N+KLLEQF+    G I  
Sbjct: 76  RRNHKGGVPPQRTRKTCIRNNKVA-GNPCPICRDHKLHVDFRNVKLLEQFVCAHTGIIFH 134

Query: 145 YMKTGVCQKQHLKLLVAITQAKNKGLITFDLPFREYNYKDY 185
              TGVC KQH KL  AI +A+  GL+++ +P  E    D+
Sbjct: 135 APYTGVCMKQHKKLTQAIQKARECGLLSYYVPQVEPRDADF 175

Mus musculus (taxid: 10090)

>sp|P82918|RT18B_BOVIN 28S ribosomal protein S18b, mitochondrial OS=Bos taurus GN=MRPS18B PE=1 SV=2

 Score =  120 bits (300), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 66/161 (40%), Positives = 89/161 (55%), Gaps = 9/161 (5%)

Query: 25  QFSLSRICCEEEGTEENKDEKPVDPAKDRRNPVPVEISIRYLASEAYQKCYGDEPVWKYY 84
           Q  L  +C +    +++    PV P +D           +YL SE Y    G  PVW  Y
Sbjct: 26  QVPLQTLCTKAPPEDDSLPPIPVSPYEDE--------PWKYLDSEEYHNRNGSRPVWADY 77

Query: 85  RRNHKGMFAPKKTRKTCIRSGIIATGNPCPICRDEYLIIHPYNIKLLEQFISPVNGEILS 144
           RRNHKG   P++TRK CIR   +A GNPCPICRD+ L +   N+KLL+QF+    G I  
Sbjct: 78  RRNHKGGIPPQRTRKMCIRGNKVA-GNPCPICRDQKLHVDFRNVKLLKQFVCAHTGIIFH 136

Query: 145 YMKTGVCQKQHLKLLVAITQAKNKGLITFDLPFREYNYKDY 185
              TGVC KQH KL  AI +A++ GL+++ +P  E    D+
Sbjct: 137 APYTGVCMKQHKKLTQAIQKARDHGLLSYHIPQVEPRDLDF 177

Bos taurus (taxid: 9913)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	190
195115888	203	GI12473 [Drosophila mojavensis] gi|19391	0.789	0.738	0.638	1e-52
195161757	196	GL26668 [Drosophila persimilis] gi|19410	0.784	0.760	0.649	3e-52
195398437	201	GJ17885 [Drosophila virilis] gi|19414148	0.721	0.681	0.671	4e-52
194760378	209	GF15452 [Drosophila ananassae] gi|190616	0.8	0.727	0.605	4e-52
312380733	223	hypothetical protein AND_07146 [Anophele	0.757	0.645	0.638	4e-52
198472887	200	GA29010 [Drosophila pseudoobscura pseudo	0.784	0.745	0.649	4e-52
357617278	183	RPS18 [Danaus plexippus]	0.794	0.825	0.629	6e-52
17647685	204	mitochondrial ribosomal protein S18B, is	0.794	0.740	0.614	2e-51
170033697	202	28S ribosomal protein S18b, mitochondria	0.857	0.806	0.558	2e-51
194879114	204	GG21586 [Drosophila erecta] gi|190657364	0.794	0.740	0.602	2e-51

>gi|195115888|ref|XP_002002488.1| GI12473 [Drosophila mojavensis] gi|193913063|gb|EDW11930.1| GI12473 [Drosophila mojavensis]

 Score =  211 bits (537), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 97/152 (63%), Positives = 122/152 (80%), Gaps = 2/152 (1%)

Query: 35  EEGTEENKDEKPVDPAKDRRNPVPVEISIRYLASEAYQKCYGDEPVWKYYRRNHKGMFAP 94
           EE +E   +  P DP KDR+N +PVE SIRYL S AY+  YGDE VW  YRRNHKGM+AP
Sbjct: 46  EENSENTANAAP-DP-KDRKNVIPVETSIRYLKSAAYKTTYGDEFVWTQYRRNHKGMYAP 103

Query: 95  KKTRKTCIRSGIIATGNPCPICRDEYLIIHPYNIKLLEQFISPVNGEILSYMKTGVCQKQ 154
           +KTRKTCIR G I+TGNPCPICRDEYL++   N +LL+QFISP +G++LSY KTG+CQK 
Sbjct: 104 RKTRKTCIRQGRISTGNPCPICRDEYLVLDYRNTELLKQFISPYSGQVLSYSKTGLCQKS 163

Query: 155 HLKLLVAITQAKNKGLITFDLPFREYNYKDYF 186
           HL+L VA+ QA++ GLIT+D+PFREY+Y +Y+
Sbjct: 164 HLRLTVAVEQARDCGLITYDVPFREYDYSEYY 195

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195161757|ref|XP_002021728.1| GL26668 [Drosophila persimilis] gi|194103528|gb|EDW25571.1| GL26668 [Drosophila persimilis]

 Score =  210 bits (534), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 98/151 (64%), Positives = 121/151 (80%), Gaps = 2/151 (1%)

Query: 36  EGTEENKDEKPVDPAKDRRNPVPVEISIRYLASEAYQKCYGDEPVWKYYRRNHKGMFAPK 95
           +G EE K   P DP KDR   +PVE SIRYL S AY++ YGD+ VW  YRRNHKGM+AP+
Sbjct: 43  DGEEEPKSSGP-DP-KDRTQVIPVETSIRYLKSVAYKETYGDDFVWSQYRRNHKGMYAPR 100

Query: 96  KTRKTCIRSGIIATGNPCPICRDEYLIIHPYNIKLLEQFISPVNGEILSYMKTGVCQKQH 155
           KTRKTCIR G I+TGNPCPICRDEYL++   N +LLEQFISP NGE+LSY KTG+CQK H
Sbjct: 101 KTRKTCIRQGKISTGNPCPICRDEYLVLDYRNTELLEQFISPHNGEVLSYSKTGLCQKSH 160

Query: 156 LKLLVAITQAKNKGLITFDLPFREYNYKDYF 186
           L+L VA+ QA++ GLIT+D+PFREY+Y +++
Sbjct: 161 LRLRVAVEQARDSGLITYDVPFREYDYNEFY 191

Source: Drosophila persimilis

Species: Drosophila persimilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195398437|ref|XP_002057828.1| GJ17885 [Drosophila virilis] gi|194141482|gb|EDW57901.1| GJ17885 [Drosophila virilis]

 Score =  209 bits (533), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 92/137 (67%), Positives = 114/137 (83%)

Query: 50  AKDRRNPVPVEISIRYLASEAYQKCYGDEPVWKYYRRNHKGMFAPKKTRKTCIRSGIIAT 109
           AKDR N +PVE SIRYL S AY+  YGDE VW  YRRNHKGM+AP+KTRKTCIR G I+T
Sbjct: 57  AKDRTNKIPVETSIRYLKSAAYKTTYGDEFVWTQYRRNHKGMYAPRKTRKTCIRQGKIST 116

Query: 110 GNPCPICRDEYLIIHPYNIKLLEQFISPVNGEILSYMKTGVCQKQHLKLLVAITQAKNKG 169
           GNPCPICRDEYL++   N +LL+QFISP +G++LSY KTG+CQK HL+L VA+ QA++ G
Sbjct: 117 GNPCPICRDEYLVLDYRNTELLQQFISPFSGQVLSYSKTGLCQKSHLRLTVAVEQARDCG 176

Query: 170 LITFDLPFREYNYKDYF 186
           LIT+D+PFREY+Y +Y+
Sbjct: 177 LITYDVPFREYDYSEYY 193

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194760378|ref|XP_001962418.1| GF15452 [Drosophila ananassae] gi|190616115|gb|EDV31639.1| GF15452 [Drosophila ananassae]

 Score =  209 bits (532), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 92/152 (60%), Positives = 117/152 (76%)

Query: 35  EEGTEENKDEKPVDPAKDRRNPVPVEISIRYLASEAYQKCYGDEPVWKYYRRNHKGMFAP 94
           E G EEN+        KDR   +PVE S+RYL S AY++ YG++ VW  YRRNHKGM+AP
Sbjct: 48  EAGGEENQSSSSGPDPKDRSKVIPVETSMRYLKSAAYKQTYGNDFVWTQYRRNHKGMYAP 107

Query: 95  KKTRKTCIRSGIIATGNPCPICRDEYLIIHPYNIKLLEQFISPVNGEILSYMKTGVCQKQ 154
           +KTRKTCIR G I+TGNPCPICRDEYL++   N +LLEQFISP NG +LSY KTG+CQK 
Sbjct: 108 RKTRKTCIRQGRISTGNPCPICRDEYLVLDYRNTELLEQFISPHNGNVLSYSKTGLCQKS 167

Query: 155 HLKLLVAITQAKNKGLITFDLPFREYNYKDYF 186
           HL+L VA+ QA++ G +T+D+PFREY+Y +Y+
Sbjct: 168 HLRLTVAVQQARDSGFLTYDVPFREYDYSEYY 199

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|312380733|gb|EFR26649.1| hypothetical protein AND_07146 [Anopheles darlingi]

 Score =  209 bits (532), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 92/144 (63%), Positives = 118/144 (81%)

Query: 46  PVDPAKDRRNPVPVEISIRYLASEAYQKCYGDEPVWKYYRRNHKGMFAPKKTRKTCIRSG 105
           P D  KDR   +PVE S+RYLASEAY++ Y D+PVWK+YRRNHKG +  KKTRKTCIR G
Sbjct: 73  PEDDPKDRTRLIPVETSVRYLASEAYRQTYQDDPVWKHYRRNHKGAYPSKKTRKTCIRKG 132

Query: 106 IIATGNPCPICRDEYLIIHPYNIKLLEQFISPVNGEILSYMKTGVCQKQHLKLLVAITQA 165
            I+TGNPCPICRDEYL++   NI LL+QFISP  GE+LSY  TG+CQK+HL+LLVA+ +A
Sbjct: 133 RISTGNPCPICRDEYLVLDHNNIDLLKQFISPQTGEVLSYRVTGLCQKKHLQLLVAVERA 192

Query: 166 KNKGLITFDLPFREYNYKDYFPTS 189
            ++G++TFD+PFREY+Y +Y+ T+
Sbjct: 193 MDRGMLTFDVPFREYDYSEYYTTN 216

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|198472887|ref|XP_002133135.1| GA29010 [Drosophila pseudoobscura pseudoobscura] gi|198139207|gb|EDY70537.1| GA29010 [Drosophila pseudoobscura pseudoobscura]

 Score =  209 bits (532), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 98/151 (64%), Positives = 121/151 (80%), Gaps = 2/151 (1%)

Query: 36  EGTEENKDEKPVDPAKDRRNPVPVEISIRYLASEAYQKCYGDEPVWKYYRRNHKGMFAPK 95
           +G EE K   P DP KDR   +PVE SIRYL S AY++ YGD+ VW  YRRNHKGM+AP+
Sbjct: 47  DGEEEPKSSGP-DP-KDRTQVIPVETSIRYLKSVAYKETYGDDFVWSQYRRNHKGMYAPR 104

Query: 96  KTRKTCIRSGIIATGNPCPICRDEYLIIHPYNIKLLEQFISPVNGEILSYMKTGVCQKQH 155
           KTRKTCIR G I+TGNPCPICRDEYL++   N +LLEQFISP NGE+LSY KTG+CQK H
Sbjct: 105 KTRKTCIRQGKISTGNPCPICRDEYLVLDYRNTELLEQFISPHNGEVLSYSKTGLCQKSH 164

Query: 156 LKLLVAITQAKNKGLITFDLPFREYNYKDYF 186
           L+L VA+ QA++ GLIT+D+PFREY+Y +++
Sbjct: 165 LRLRVAVEQARDSGLITYDVPFREYDYNEFY 195

Source: Drosophila pseudoobscura pseudoobscura

Species: Drosophila pseudoobscura

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357617278|gb|EHJ70696.1| RPS18 [Danaus plexippus]

 Score =  209 bits (531), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 95/151 (62%), Positives = 121/151 (80%)

Query: 35  EEGTEENKDEKPVDPAKDRRNPVPVEISIRYLASEAYQKCYGDEPVWKYYRRNHKGMFAP 94
           ++  E  + +KP+DP KDR   +P+E SIRYL S+AY+K YGD+PVW  YRRNHKG FAP
Sbjct: 28  DQTDESEEQQKPIDPTKDRTKIIPIETSIRYLQSDAYKKTYGDKPVWFLYRRNHKGGFAP 87

Query: 95  KKTRKTCIRSGIIATGNPCPICRDEYLIIHPYNIKLLEQFISPVNGEILSYMKTGVCQKQ 154
           +KTR+TCIR+GII+TGNPCPICRDEYLI+ P N+ LLEQFIS   G+IL   KTG+CQK+
Sbjct: 88  RKTRRTCIRNGIISTGNPCPICRDEYLILDPKNVSLLEQFISEYTGQILEPSKTGLCQKK 147

Query: 155 HLKLLVAITQAKNKGLITFDLPFREYNYKDY 185
           H +LLVAI +A ++G IT+D+PFREY+Y  Y
Sbjct: 148 HKELLVAIERAWDQGYITYDVPFREYDYSLY 178

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|17647685|ref|NP_523606.1| mitochondrial ribosomal protein S18B, isoform A [Drosophila melanogaster] gi|24585392|ref|NP_724248.1| mitochondrial ribosomal protein S18B, isoform B [Drosophila melanogaster] gi|7298662|gb|AAF53877.1| mitochondrial ribosomal protein S18B, isoform A [Drosophila melanogaster] gi|18447376|gb|AAL68253.1| LP10852p [Drosophila melanogaster] gi|22946894|gb|AAN11068.1| mitochondrial ribosomal protein S18B, isoform B [Drosophila melanogaster] gi|220944418|gb|ACL84752.1| mRpS18B-PA [synthetic construct] gi|220954374|gb|ACL89730.1| mRpS18B-PA [synthetic construct]

 Score =  207 bits (526), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 94/153 (61%), Positives = 121/153 (79%), Gaps = 2/153 (1%)

Query: 34  EEEGTEENKDEKPVDPAKDRRNPVPVEISIRYLASEAYQKCYGDEPVWKYYRRNHKGMFA 93
           E EG E+N      DP KDR  P+PVE SIRYL S AY++ YG++ VW  YRRNHKGM+A
Sbjct: 46  EGEG-EDNASGSAPDP-KDRSKPIPVETSIRYLKSAAYKQTYGEDFVWTQYRRNHKGMYA 103

Query: 94  PKKTRKTCIRSGIIATGNPCPICRDEYLIIHPYNIKLLEQFISPVNGEILSYMKTGVCQK 153
           P+KTRKTCIR   I+TGNPCPICRDEYL++   N +LLEQFISP +G++LSY KTG+CQK
Sbjct: 104 PRKTRKTCIRQNRISTGNPCPICRDEYLVLDYRNTELLEQFISPHSGDVLSYSKTGLCQK 163

Query: 154 QHLKLLVAITQAKNKGLITFDLPFREYNYKDYF 186
            HL+L+VA+ QA++ G +T+D+PFREY+Y +Y+
Sbjct: 164 SHLRLMVAVQQARDSGYLTYDVPFREYDYSEYY 196

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170033697|ref|XP_001844713.1| 28S ribosomal protein S18b, mitochondrial [Culex quinquefasciatus] gi|167874681|gb|EDS38064.1| 28S ribosomal protein S18b, mitochondrial [Culex quinquefasciatus]

 Score =  207 bits (526), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 96/172 (55%), Positives = 128/172 (74%), Gaps = 9/172 (5%)

Query: 24  RQFSLS--RICCEEEGTEEN-------KDEKPVDPAKDRRNPVPVEISIRYLASEAYQKC 74
           R F++S  R   E+E  EE+       K   PVD  KDR   +PVE SIRYLASEAYQ+ 
Sbjct: 26  RSFAVSSLRASTEKEAVEEDPGAEGETKSAAPVDDPKDRTRVIPVETSIRYLASEAYQQT 85

Query: 75  YGDEPVWKYYRRNHKGMFAPKKTRKTCIRSGIIATGNPCPICRDEYLIIHPYNIKLLEQF 134
           Y  EPVWK YRRNHKG++ PK+TRKTC+R G ++TGNPCP+CRDEYL++   N++LL+QF
Sbjct: 86  YQGEPVWKNYRRNHKGLYPPKQTRKTCVRKGKLSTGNPCPVCRDEYLVLDHQNVELLKQF 145

Query: 135 ISPVNGEILSYMKTGVCQKQHLKLLVAITQAKNKGLITFDLPFREYNYKDYF 186
           +SP  G++LSY  TG+CQ++ L+L VAI +A + GLITFD+PFR+Y+Y +Y+
Sbjct: 146 VSPQTGKVLSYSITGLCQRKQLELKVAIDRAMDYGLITFDVPFRDYDYAEYY 197

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194879114|ref|XP_001974177.1| GG21586 [Drosophila erecta] gi|190657364|gb|EDV54577.1| GG21586 [Drosophila erecta]

 Score =  207 bits (526), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 91/151 (60%), Positives = 116/151 (76%)

Query: 36  EGTEENKDEKPVDPAKDRRNPVPVEISIRYLASEAYQKCYGDEPVWKYYRRNHKGMFAPK 95
           EG  E+        AKDR   +PVE SIRYL S AY++ YG++ VW  YRRNHKGM+AP+
Sbjct: 46  EGEGEDSASGSAPDAKDRSKAIPVETSIRYLKSAAYKQTYGEDFVWTQYRRNHKGMYAPR 105

Query: 96  KTRKTCIRSGIIATGNPCPICRDEYLIIHPYNIKLLEQFISPVNGEILSYMKTGVCQKQH 155
           KTRKTCIR   I TGNPCPICRDEYL++   N +LLEQFISP +G++LSY KTG+CQK H
Sbjct: 106 KTRKTCIRQNRITTGNPCPICRDEYLVLDYRNTELLEQFISPHSGDVLSYSKTGLCQKSH 165

Query: 156 LKLLVAITQAKNKGLITFDLPFREYNYKDYF 186
           L+L+VA+ QA++ G IT+D+PFREY+Y +Y+
Sbjct: 166 LRLMVAVQQARDSGYITYDVPFREYDYNEYY 196

Source: Drosophila erecta

Species: Drosophila erecta

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	190
FB|FBgn0032849	204	mRpS18B "mitochondrial ribosom	0.726	0.676	0.640	3.2e-49
UNIPROTKB|E2R2K6	257	MRPS18B "Uncharacterized prote	0.731	0.540	0.482	3.1e-28
UNIPROTKB|Q9Y676	258	MRPS18B "28S ribosomal protein	0.815	0.600	0.436	8.2e-28
UNIPROTKB|Q767K8	258	MRPS18B "28S ribosomal protein	0.815	0.600	0.432	8.2e-28
UNIPROTKB|F1N059	258	MRPS18B "28S ribosomal protein	0.731	0.538	0.468	1e-27
RGD|1302998	253	Mrps18b "mitochondrial ribosom	0.668	0.501	0.492	1.7e-27
MGI|MGI:1914223	254	Mrps18b "mitochondrial ribosom	0.636	0.476	0.508	4.5e-27
UNIPROTKB|P82918	258	MRPS18B "28S ribosomal protein	0.731	0.538	0.462	9.4e-27
ZFIN|ZDB-GENE-050417-278	242	mrps18b "mitochondrial ribosom	0.647	0.508	0.491	1.4e-25
WB|WBGene00011759	238	mrps-18B [Caenorhabditis elega	0.652	0.521	0.333	1.2e-17

FB|FBgn0032849 mRpS18B "mitochondrial ribosomal protein S18B" [Drosophila melanogaster (taxid:7227)]

 Score = 513 (185.6 bits), Expect = 3.2e-49, P = 3.2e-49
 Identities = 89/139 (64%), Positives = 115/139 (82%)

Query:    48 DPAKDRRNPVPVEISIRYLASEAYQKCYGDEPVWKYYRRNHKGMFAPKKTRKTCIRSGII 107
             DP KDR  P+PVE SIRYL S AY++ YG++ VW  YRRNHKGM+AP+KTRKTCIR   I
Sbjct:    59 DP-KDRSKPIPVETSIRYLKSAAYKQTYGEDFVWTQYRRNHKGMYAPRKTRKTCIRQNRI 117

Query:   108 ATGNPCPICRDEYLIIHPYNIKLLEQFISPVNGEILSYMKTGVCQKQHLKLLVAITQAKN 167
             +TGNPCPICRDEYL++   N +LLEQFISP +G++LSY KTG+CQK HL+L+VA+ QA++
Sbjct:   118 STGNPCPICRDEYLVLDYRNTELLEQFISPHSGDVLSYSKTGLCQKSHLRLMVAVQQARD 177

Query:   168 KGLITFDLPFREYNYKDYF 186
              G +T+D+PFREY+Y +Y+
Sbjct:   178 SGYLTYDVPFREYDYSEYY 196

GO:0006412 "translation" evidence=ISS

GO:0005763 "mitochondrial small ribosomal subunit" evidence=ISS

GO:0003735 "structural constituent of ribosome" evidence=ISS

UNIPROTKB|E2R2K6 MRPS18B "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 315 (115.9 bits), Expect = 3.1e-28, P = 3.1e-28
 Identities = 70/145 (48%), Positives = 86/145 (59%)

Query:    49 PAKDRRNPVPVEI----SIRYLASEAYQKCYGDEPVWKYYRRNHKGMFAPKKTRKTCIRS 104
             P +D   PVP+        +YL SE YQ  Y   PVW  YRRNHKG   P++TRKTCIR 
Sbjct:    38 PEEDSLPPVPISPYKNEPWKYLDSEEYQNRYSTRPVWADYRRNHKGGIPPQRTRKTCIRR 97

Query:   105 GIIATGNPCPICRDEYLIIHPYNIKLLEQFISPVNGEILSYMKTGVCQKQHLKLLVAITQ 164
               +A GNPCPICRD  L +   N+KLLEQF+    G I     TGVC KQH KL  AI +
Sbjct:    98 DKVA-GNPCPICRDHKLHVDFRNVKLLEQFVCAHTGVIFHAPYTGVCMKQHKKLTQAIQK 156

Query:   165 AKNKGLITFDLPFREYNYKDYFPTS 189
             A++ GL+++ +P  E    D F TS
Sbjct:   157 ARDHGLLSYHIPQVEPRDLD-FSTS 180

GO:0005739 "mitochondrion" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

UNIPROTKB|Q9Y676 MRPS18B "28S ribosomal protein S18b, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 311 (114.5 bits), Expect = 8.2e-28, P = 8.2e-28
 Identities = 72/165 (43%), Positives = 89/165 (53%)

Query:    25 QFSLSRICCXXXXXXXXXXXKPVDPAKDRRNPVPVEISIRYLASEAYQKCYGDEPVWKYY 84
             Q  L  +C             P+ P KD   P       +YL SE YQ+ YG  PVW  Y
Sbjct:    26 QVPLQTLCTKAPSEEDSLSSVPISPYKDE--PW------KYLESEEYQERYGSRPVWADY 77

Query:    85 RRNHKGMFAPKKTRKTCIRSGIIATGNPCPICRDEYLIIHPYNIKLLEQFISPVNGEILS 144
             RRNHKG   P++TRKTCIR   +  GNPCPICRD  L +   N+KLLEQF+    G I  
Sbjct:    78 RRNHKGGVPPQRTRKTCIRRNKVV-GNPCPICRDHKLHVDFRNVKLLEQFVCAHTGIIFY 136

Query:   145 YMKTGVCQKQHLKLLVAITQAKNKGLITFDLPFREYNYKDYFPTS 189
                TGVC KQH +L  AI +A++ GL+ + +P  E    D F TS
Sbjct:   137 APYTGVCVKQHKRLTQAIQKARDHGLLIYHIPQVEPRDLD-FSTS 180

GO:0003735 "structural constituent of ribosome" evidence=NAS

GO:0006412 "translation" evidence=NAS

GO:0005763 "mitochondrial small ribosomal subunit" evidence=NAS

UNIPROTKB|Q767K8 MRPS18B "28S ribosomal protein S18b, mitochondrial" [Sus scrofa (taxid:9823)]

 Score = 311 (114.5 bits), Expect = 8.2e-28, P = 8.2e-28
 Identities = 71/164 (43%), Positives = 88/164 (53%)

Query:    25 QFSLSRICCXXXXXXXXXXXKPVDPAKDRRNPVPVEISIRYLASEAYQKCYGDEPVWKYY 84
             Q  L  +C             P+ P KD   P       +YL SE YQ  YG  PVW  Y
Sbjct:    26 QVLLQTLCTKAPPEDDSLPQVPISPYKDE--PW------KYLDSEEYQNRYGSRPVWADY 77

Query:    85 RRNHKGMFAPKKTRKTCIRSGIIATGNPCPICRDEYLIIHPYNIKLLEQFISPVNGEILS 144
             RRNHKG   P++TRK CIR   +A GNPCPICRD+ L +   N+KLLEQF+    G I  
Sbjct:    78 RRNHKGGIPPQRTRKMCIRGNKVA-GNPCPICRDQKLHVDFRNVKLLEQFVCAHTGIIFH 136

Query:   145 YMKTGVCQKQHLKLLVAITQAKNKGLITFDLPFREYNYKDYFPT 188
                TGVC KQH KL  AI +A++ GL+ + +P  E    D+  T
Sbjct:   137 APYTGVCMKQHKKLTQAIQKARDHGLLRYHIPQVEPRDLDFSTT 180

GO:0005739 "mitochondrion" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

UNIPROTKB|F1N059 MRPS18B "28S ribosomal protein S18b, mitochondrial" [Bos taurus (taxid:9913)]

 Score = 310 (114.2 bits), Expect = 1.0e-27, P = 1.0e-27
 Identities = 68/145 (46%), Positives = 86/145 (59%)

Query:    49 PAKDRRNPVPV----EISIRYLASEAYQKCYGDEPVWKYYRRNHKGMFAPKKTRKTCIRS 104
             P  D   P+PV    +   +YL SE Y   YG  PVW  YRRNHKG   P++TRK CIR 
Sbjct:    38 PEDDSLPPIPVSPYEDEPWKYLDSEEYHNRYGSRPVWADYRRNHKGGIPPQRTRKMCIRG 97

Query:   105 GIIATGNPCPICRDEYLIIHPYNIKLLEQFISPVNGEILSYMKTGVCQKQHLKLLVAITQ 164
               +A GNPCPICRD+ L +   N+KLL+QF+    G I     TGVC KQH KL  AI +
Sbjct:    98 NKVA-GNPCPICRDQKLHVDFRNVKLLKQFVCAHTGIIFHAPYTGVCMKQHKKLTQAIQK 156

Query:   165 AKNKGLITFDLPFREYNYKDYFPTS 189
             A++ GL+++ +P  E    D F TS
Sbjct:   157 ARDHGLLSYHIPQVEPRDLD-FSTS 180

GO:0005739 "mitochondrion" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

RGD|1302998 Mrps18b "mitochondrial ribosomal protein S18B" [Rattus norvegicus (taxid:10116)]

 Score = 308 (113.5 bits), Expect = 1.7e-27, P = 1.7e-27
 Identities = 65/132 (49%), Positives = 81/132 (61%)

Query:    49 PAKDRRNPVPVEI----SIRYLASEAYQKCYGDEPVWKYYRRNHKGMFAPKKTRKTCIRS 104
             P +D  + +PV        +YL SE YQ  YG  PVW  YRRNHKG   P++TRKTCIR 
Sbjct:    35 PPEDASSSLPVSPFENEPWKYLDSEEYQNRYGSRPVWADYRRNHKGGVPPQRTRKTCIRK 94

Query:   105 GIIATGNPCPICRDEYLIIHPYNIKLLEQFISPVNGEILSYMKTGVCQKQHLKLLVAITQ 164
               +A GNPCPICRD  L +   N+KLLEQF+    G I     TGVC KQH KL  AI +
Sbjct:    95 DKVA-GNPCPICRDHKLHVDFRNVKLLEQFVCAHTGIIFHAPYTGVCMKQHKKLTQAIQK 153

Query:   165 AKNKGLITFDLP 176
             A+  GL+++ +P
Sbjct:   154 AREYGLLSYYVP 165

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA;ISO

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

MGI|MGI:1914223 Mrps18b "mitochondrial ribosomal protein S18B" [Mus musculus (taxid:10090)]

 Score = 304 (112.1 bits), Expect = 4.5e-27, P = 4.5e-27
 Identities = 62/122 (50%), Positives = 77/122 (63%)

Query:    64 RYLASEAYQKCYGDEPVWKYYRRNHKGMFAPKKTRKTCIRSGIIATGNPCPICRDEYLII 123
             +YL SE Y   YG  PVW  YRRNHKG   P++TRKTCIR+  +A GNPCPICRD  L +
Sbjct:    55 KYLDSEEYHNRYGSRPVWADYRRNHKGGVPPQRTRKTCIRNNKVA-GNPCPICRDHKLHV 113

Query:   124 HPYNIKLLEQFISPVNGEILSYMKTGVCQKQHLKLLVAITQAKNKGLITFDLPFREYNYK 183
                N+KLLEQF+    G I     TGVC KQH KL  AI +A+  GL+++ +P  E    
Sbjct:   114 DFRNVKLLEQFVCAHTGIIFHAPYTGVCMKQHKKLTQAIQKARECGLLSYYVPQVEPRDA 173

Query:   184 DY 185
             D+
Sbjct:   174 DF 175

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0030529 "ribonucleoprotein complex" evidence=IEA

UNIPROTKB|P82918 MRPS18B "28S ribosomal protein S18b, mitochondrial" [Bos taurus (taxid:9913)]

 Score = 301 (111.0 bits), Expect = 9.4e-27, P = 9.4e-27
 Identities = 67/145 (46%), Positives = 85/145 (58%)

Query:    49 PAKDRRNPVPV----EISIRYLASEAYQKCYGDEPVWKYYRRNHKGMFAPKKTRKTCIRS 104
             P  D   P+PV    +   +YL SE Y    G  PVW  YRRNHKG   P++TRK CIR 
Sbjct:    38 PEDDSLPPIPVSPYEDEPWKYLDSEEYHNRNGSRPVWADYRRNHKGGIPPQRTRKMCIRG 97

Query:   105 GIIATGNPCPICRDEYLIIHPYNIKLLEQFISPVNGEILSYMKTGVCQKQHLKLLVAITQ 164
               +A GNPCPICRD+ L +   N+KLL+QF+    G I     TGVC KQH KL  AI +
Sbjct:    98 NKVA-GNPCPICRDQKLHVDFRNVKLLKQFVCAHTGIIFHAPYTGVCMKQHKKLTQAIQK 156

Query:   165 AKNKGLITFDLPFREYNYKDYFPTS 189
             A++ GL+++ +P  E    D F TS
Sbjct:   157 ARDHGLLSYHIPQVEPRDLD-FSTS 180

GO:0005739 "mitochondrion" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

ZFIN|ZDB-GENE-050417-278 mrps18b "mitochondrial ribosomal protein S18B" [Danio rerio (taxid:7955)]

 Score = 290 (107.1 bits), Expect = 1.4e-25, P = 1.4e-25
 Identities = 61/124 (49%), Positives = 73/124 (58%)

Query:    65 YLASEAYQKCYGDEPVWKYYRRNHKGMFAPKKTRKTCIRSGIIATGNPCPICRDEYLIIH 124
             YL SE Y + YG +PVW  YRRNHKG   P+KTRKTCIR G     NPCPICRD  +IIH
Sbjct:    72 YLKSEEYIERYGTKPVWTNYRRNHKGGIPPQKTRKTCIR-GDKKCANPCPICRDPNIIIH 130

Query:   125 PYNIKLLEQFISPVNGEILSYMKTGVCQKQHLKLLVAITQAKNKGLITFDLPFREYNYKD 184
               N+ LL+QF  P  G +     TGVC KQ   L  AI  AK+ GL+       ++  +D
Sbjct:   131 YKNVNLLQQFFCPETGVVHDPTVTGVCMKQQKLLSKAIETAKDFGLLRAQFAHVDFTKED 190

Query:   185 YFPT 188
             Y  T
Sbjct:   191 YSNT 194

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

WB|WBGene00011759 mrps-18B [Caenorhabditis elegans (taxid:6239)]

 Score = 215 (80.7 bits), Expect = 1.2e-17, P = 1.2e-17
 Identities = 42/126 (33%), Positives = 72/126 (57%)

Query:    63 IRYLASEAYQKCYGDEPVWKYYRRNHKGMFAPKKT-RKTCI-RSGIIATGNPCPICRDEY 120
             I Y+ S  Y + Y   P++++Y+RN KG    +   R  CI + G     + CP+CRDEY
Sbjct:    58 ISYMKSRGYAEAYKGLPIYRWYKRNIKGQSKLQPPPRLFCIDKHGRFNLNHACPVCRDEY 117

Query:   121 LIIHPYNIKLLEQFISPVNGEILSYMKTGVCQKQHLKLLVAITQAKNKGLITFDLPFREY 180
             L     N  L+EQF++    + +  +K+G+C++Q+  L   + +AK  G ITF + FR +
Sbjct:   118 LYFDYRNPGLIEQFLADGTDQPIDILKSGLCREQYTLLRAQLLKAKEHGTITFGVEFRNF 177

Query:   181 NYKDYF 186
             +Y+ ++
Sbjct:   178 DYRQWY 183

GO:0040007 "growth" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0006898 "receptor-mediated endocytosis" evidence=IMP

GO:0000003 "reproduction" evidence=IMP

GO:0040035 "hermaphrodite genitalia development" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q767K8	RT18B_PIG	No assigned EC number	0.4268	0.8157	0.6007	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	190
pfam01084	54	pfam01084, Ribosomal_S18, Ribosomal protein S18	1e-06
CHL00077	86	CHL00077, rps18, ribosomal protein S18	2e-04
PRK00391	79	PRK00391, rpsR, 30S ribosomal protein S18; Reviewe	0.001
COG0238	75	COG0238, RpsR, Ribosomal protein S18 [Translation,	0.001
PRK13401	82	PRK13401, PRK13401, 30S ribosomal protein S18; Pro	0.004

>gnl|CDD|201589 pfam01084, Ribosomal_S18, Ribosomal protein S18

 Score = 43.6 bits (104), Expect = 1e-06
 Identities = 19/45 (42%), Positives = 28/45 (62%), Gaps = 1/45 (2%)

Query: 127 NIKLLEQFISPVNGEILSYMKTGVCQKQHLKLLVAITQAKNKGLI 171
           +++LL +FIS   G+IL    TG+C KQ  KL  AI +A+   L+
Sbjct: 11  DVELLRRFISE-RGKILPRRITGLCAKQQRKLAKAIKRARILALL 54

Length = 54

>gnl|CDD|177016 CHL00077, rps18, ribosomal protein S18

 Score = 38.4 bits (90), Expect = 2e-04
 Identities = 21/51 (41%), Positives = 27/51 (52%), Gaps = 5/51 (9%)

Query: 127 NIKLLEQFISPVNGEILSYMKTGVCQKQHLKLLVAITQAKNKGLITFDLPF 177
           N+ LL +FIS   G+ILS   T +  KQ   +  AI QA+   L    LPF
Sbjct: 32  NMSLLSRFISE-QGKILSRRVTRLTLKQQRLITKAIKQARILSL----LPF 77

Length = 86

>gnl|CDD|178997 PRK00391, rpsR, 30S ribosomal protein S18; Reviewed

 Score = 36.3 bits (85), Expect = 0.001
 Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 5/65 (7%)

Query: 113 CPICRDEYLIIHPYNIKLLEQFISPVNGEILSYMKTGVCQKQHLKLLVAITQAKNKGLIT 172
           C  C ++   I   +++LL++FIS   G+IL    TG   K   +L  AI +A+   L  
Sbjct: 17  CRFCAEKIEYIDYKDVELLKKFISE-RGKILPRRITGTSAKHQRQLATAIKRARFLAL-- 73

Query: 173 FDLPF 177
             LP+
Sbjct: 74  --LPY 76

Length = 79

>gnl|CDD|223316 COG0238, RpsR, Ribosomal protein S18 [Translation, ribosomal structure and biogenesis]

 Score = 35.7 bits (83), Expect = 0.001
 Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 1/59 (1%)

Query: 113 CPICRDEYLIIHPYNIKLLEQFISPVNGEILSYMKTGVCQKQHLKLLVAITQAKNKGLI 171
           C    +    I   +++LL++FIS   G+IL    TG   K   +L  AI +A+   L+
Sbjct: 18  CRFTAEGIEEIDYKDVELLKRFISE-RGKILPRRITGTSAKHQRRLARAIKRARYLALL 75

Length = 75

>gnl|CDD|184031 PRK13401, PRK13401, 30S ribosomal protein S18; Provisional

 Score = 34.7 bits (80), Expect = 0.004
 Identities = 17/82 (20%), Positives = 29/82 (35%), Gaps = 5/82 (6%)

Query: 103 RSGIIATGNPCPICRDEYLIIHPYNIKLLEQFISPVNGEILSYMKTGVCQKQHLKLLVAI 162
                       +       +   +  LL  FIS   G+I S   TG+  +Q  ++  AI
Sbjct: 6   ARKGPTKAKKNLLDSLGIESVDYKDTALLRTFISD-RGKIRSRRVTGLTVQQQRQVATAI 64

Query: 163 TQAKNKGLITFDLPFREYNYKD 184
             A+   L    LP+   + + 
Sbjct: 65  KNAREMAL----LPYPGRDRQR 82

Length = 82

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	190
KOG4021|consensus	239		100.0
TIGR00165	70	S18 ribosomal protein S18. This ribosomal small su	99.96
PRK00391	79	rpsR 30S ribosomal protein S18; Reviewed	99.96
PRK13401	82	30S ribosomal protein S18; Provisional	99.95
PRK13400	147	30S ribosomal protein S18; Provisional	99.94
CHL00077	86	rps18 ribosomal protein S18	99.93
COG0238	75	RpsR Ribosomal protein S18 [Translation, ribosomal	99.92
PF01084	54	Ribosomal_S18: Ribosomal protein S18; InterPro: IP	99.88
KOG3162|consensus	159		99.76

>KOG4021|consensus

Probab=100.00  E-value=3.3e-52  Score=354.28  Aligned_cols=129  Identities=47%  Similarity=0.957  Sum_probs=125.1

Q ss_pred             hhhHhhhccHHHHhhhCCCcccccccccCCCCCCCCCCCccccccceecCCCCCccccCCccccCcccHHHHhhcCCCCC
Q psy1551          60 EISIRYLASEAYQKCYGDEPVWKYYRRNHKGMFAPKKTRKTCIRSGIIATGNPCPICRDEYLIIHPYNIKLLEQFISPVN  139 (190)
Q Consensus        60 e~s~~Yl~S~~y~~~Yg~~pvw~~YRRNhKG~~pP~ktRktCir~gk~~~~npCpiCrd~~~~IDYKNV~LL~qFIs~~t  139 (190)
                      |+.|+||+|++|.++||+.|||.+|||||||+.+||+||+||||..++..+||||||||+++++||+|+.||+|||+++|
T Consensus        58 ~qp~kYlkS~~Y~e~Yg~~pVw~~YrRNhKG~~~pq~tRktCIrkn~~~~gnpCPICRDeyL~~DyRN~~LlEQF~~~ht  137 (239)
T KOG4021|consen   58 EQPSKYLKSRGYAEAYGGLPVWRWYRRNHKGQSKPQPTRKTCIRKNGRFLGNPCPICRDEYLYFDYRNPGLLEQFLADHT  137 (239)
T ss_pred             hhHHHHHHHHHHHHHhcCCcHHHHHHhhccCCCCCCCchhHHHhhcCeecCCCCCccccceEEEeccCHHHHHHHhccCC
Confidence            36678999999999999999999999999999999999999999777778999999999999999999999999999999


Q ss_pred             CeecccccccCCHHHHHHHHHHHHHHHHccccCcccCCcccccCCcCCC
Q psy1551         140 GEILSYMKTGVCQKQHLKLLVAITQAKNKGLITFDLPFREYNYKDYFPT  188 (190)
Q Consensus       140 GkILprr~TGlC~KqQRkL~kAIKrAR~lGLLPf~vpf~~ydy~~y~~~  188 (190)
                      |+|+....||||.||+..|..||.+||++|+|.|.+||++|||++||++
T Consensus       138 g~~i~y~ktGlC~kqh~rL~~a~qkArdhG~lty~VpfR~~Dys~~yg~  186 (239)
T KOG4021|consen  138 GQPIDYLKTGLCRKQHTRLRAALQKARDHGTLTYGVPFRNFDYSQWYGS  186 (239)
T ss_pred             CCchhhhhcchHHHHHHHHHHHHHHhhhcCeEEecCCcccCchHHhccc
Confidence            9999999999999999999999999999999999999999999999986

>TIGR00165 S18 ribosomal protein S18

Probab=99.96  E-value=3.9e-29  Score=181.64  Aligned_cols=66  Identities=27%  Similarity=0.388  Sum_probs=62.9

Q ss_pred             CCCCCccccCCccccCcccHHHHhhcCCCCCCeecccccccCCHHHHHHHHHHHHHHHHccccCccc
Q psy1551         109 TGNPCPICRDEYLIIHPYNIKLLEQFISPVNGEILSYMKTGVCQKQHLKLLVAITQAKNKGLITFDL  175 (190)
Q Consensus       109 ~~npCpiCrd~~~~IDYKNV~LL~qFIs~~tGkILprr~TGlC~KqQRkL~kAIKrAR~lGLLPf~v  175 (190)
                      .+++||||.+++..|||||++||++|||+ .|+|+||++||+|+||||+|++|||+||.+|||||+.
T Consensus         4 r~k~c~~~~~~~~~iDYKnv~lL~~Fis~-~GkIlpRriTgl~~k~Qr~l~~aIKrAR~~~LlP~~~   69 (70)
T TIGR00165         4 RKKYCRFTAEGIQFIDYKDLDLLKKFISE-RGKILPRRITGTSAKYQRRLARAIKRARYLALLPYVK   69 (70)
T ss_pred             CCCCCCccCCCCCcCCccCHHHHHHhcCC-CCeEcCCccCCcCHHHHHHHHHHHHHHHHHhcCCccC
Confidence            35789999999889999999999999999 5999999999999999999999999999999999985

This ribosomal small subunit protein is found in all eubacteria so far, as well as in chloroplasts. YER050C from Saccharomyces cerevisiae and a related protein from Caenorhabditis elegans appear to be homologous and may represent mitochondrial forms. The trusted cutoff is set high enough that these two candidate S18 proteins are not categorized automatically.

>PRK00391 rpsR 30S ribosomal protein S18; Reviewed

Probab=99.96  E-value=4.2e-29  Score=185.10  Aligned_cols=67  Identities=28%  Similarity=0.446  Sum_probs=63.9

Q ss_pred             cCCCCCccccCCccccCcccHHHHhhcCCCCCCeecccccccCCHHHHHHHHHHHHHHHHccccCccc
Q psy1551         108 ATGNPCPICRDEYLIIHPYNIKLLEQFISPVNGEILSYMKTGVCQKQHLKLLVAITQAKNKGLITFDL  175 (190)
Q Consensus       108 ~~~npCpiCrd~~~~IDYKNV~LL~qFIs~~tGkILprr~TGlC~KqQRkL~kAIKrAR~lGLLPf~v  175 (190)
                      ...++|+||.+++..|||||++||+||||+ +|+|+||++||+|+||||+|++|||+||.||||||+.
T Consensus        12 ~r~k~c~~c~~~~~~iDYKnv~lL~~Fis~-~GkIlprriTG~~~k~Qr~l~~aIkrAR~~~LlPf~~   78 (79)
T PRK00391         12 RRKKVCRFCAEKIEYIDYKDVELLKKFISE-RGKILPRRITGTSAKHQRQLATAIKRARFLALLPYVD   78 (79)
T ss_pred             CCCCCCcccCCCCCcCCccCHHHHHHhcCC-CceEcCcccCCcCHHHHHHHHHHHHHHHHhhCCCccC
Confidence            357799999999889999999999999999 6999999999999999999999999999999999985

>PRK13401 30S ribosomal protein S18; Provisional

Probab=99.95  E-value=1.8e-28  Score=183.11  Aligned_cols=68  Identities=22%  Similarity=0.204  Sum_probs=65.0

Q ss_pred             CCCCCccccCCccccCcccHHHHhhcCCCCCCeecccccccCCHHHHHHHHHHHHHHHHccccCcccCC
Q psy1551         109 TGNPCPICRDEYLIIHPYNIKLLEQFISPVNGEILSYMKTGVCQKQHLKLLVAITQAKNKGLITFDLPF  177 (190)
Q Consensus       109 ~~npCpiCrd~~~~IDYKNV~LL~qFIs~~tGkILprr~TGlC~KqQRkL~kAIKrAR~lGLLPf~vpf  177 (190)
                      .+++|+||.+++..|||||++||++|||+ +|+|+||++||||+||||+|++|||+||.||||||+...
T Consensus        12 r~k~c~~~~~~~~~iDYKnv~lL~~Fis~-~GkIlpRR~TGl~~k~QR~l~~AIKrAR~laLlPf~~~~   79 (82)
T PRK13401         12 KAKKNLLDSLGIESVDYKDTALLRTFISD-RGKIRSRRVTGLTVQQQRQVATAIKNAREMALLPYPGRD   79 (82)
T ss_pred             CCCCCCcccCCCCcCCccCHHHHHHhcCC-CccCcCcccCCcCHHHHHHHHHHHHHHHHHhcCccccCC
Confidence            57899999999999999999999999999 699999999999999999999999999999999998765

>PRK13400 30S ribosomal protein S18; Provisional

Probab=99.94  E-value=5.1e-27  Score=190.56  Aligned_cols=87  Identities=22%  Similarity=0.293  Sum_probs=73.6

Q ss_pred             CCCcccccccee-cCCCCCccccCCccccCcccHHHHhhcCCCCCCeecccccccCCHHHHHHHHHHHHHHHHccccCcc
Q psy1551          96 KTRKTCIRSGII-ATGNPCPICRDEYLIIHPYNIKLLEQFISPVNGEILSYMKTGVCQKQHLKLLVAITQAKNKGLITFD  174 (190)
Q Consensus        96 ktRktCir~gk~-~~~npCpiCrd~~~~IDYKNV~LL~qFIs~~tGkILprr~TGlC~KqQRkL~kAIKrAR~lGLLPf~  174 (190)
                      -||..-...+++ ..++.|+||.+++..|||||++||++|||+ +|||+|||+||+|+||||+|++|||+||.||||||+
T Consensus         7 ~~r~~~~gr~~~~~RrK~C~~c~~~~~~IDYKNv~lL~~FISe-~GKIlPRRiTGlcaK~QRkLakAIKRAR~laLLPfv   85 (147)
T PRK13400          7 PNRPARGGRGRYTPKRKICSFCAEKVSRIDYKDSAKLARYISD-RGKIEPRRRTGTCARHQRALANAIKRARFIALMPFV   85 (147)
T ss_pred             CCCcCcCCCCccCCCCCCCCccCCCCCccCCcCHHHHHHhcCc-CccCcCcccCCcCHHHHHHHHHHHHHHHHHhccccc
Confidence            344433323333 356789999999999999999999999999 699999999999999999999999999999999999


Q ss_pred             cCCcccccC
Q psy1551         175 LPFREYNYK  183 (190)
Q Consensus       175 vpf~~ydy~  183 (190)
                      ..+....-+
T Consensus        86 ~~~ir~~g~   94 (147)
T PRK13400         86 SEHVRRQGN   94 (147)
T ss_pred             cccccccCC
Confidence            988766543

>CHL00077 rps18 ribosomal protein S18

Probab=99.93  E-value=3.1e-26  Score=172.49  Aligned_cols=69  Identities=32%  Similarity=0.339  Sum_probs=63.8

Q ss_pred             CCCCCccccCCccccCcccHHHHhhcCCCCCCeecccccccCCHHHHHHHHHHHHHHHHccccCcccCCccc
Q psy1551         109 TGNPCPICRDEYLIIHPYNIKLLEQFISPVNGEILSYMKTGVCQKQHLKLLVAITQAKNKGLITFDLPFREY  180 (190)
Q Consensus       109 ~~npCpiCrd~~~~IDYKNV~LL~qFIs~~tGkILprr~TGlC~KqQRkL~kAIKrAR~lGLLPf~vpf~~y  180 (190)
                      ..+.||||...  .|||||++||++|||+ +|+|+||++||||+||||+|++|||+||.+|||||+.....|
T Consensus        16 rrk~~~~~~~~--~iDYKnv~lL~~Fis~-~GkIlpRriTGl~~K~QR~l~~aIKrAR~~gLlP~~~~~~~f   84 (86)
T CHL00077         16 RRRLPPIQSGD--RIDYKNMSLLSRFISE-QGKILSRRVTRLTLKQQRLITKAIKQARILSLLPFLNNEKQF   84 (86)
T ss_pred             ccCCCCCCCCC--cCCccCHHHHHHhcCC-CCeEcCcccCCcCHHHHHHHHHHHHHHHHHhcCCcccccccc
Confidence            46789999875  6999999999999999 699999999999999999999999999999999999876554

>COG0238 RpsR Ribosomal protein S18 [Translation, ribosomal structure and biogenesis]

Probab=99.92  E-value=1.7e-25  Score=164.86  Aligned_cols=64  Identities=28%  Similarity=0.403  Sum_probs=60.9

Q ss_pred             ecCCCCCccccCCccccCcccHHHHhhcCCCCCCeecccccccCCHHHHHHHHHHHHHHHHcccc
Q psy1551         107 IATGNPCPICRDEYLIIHPYNIKLLEQFISPVNGEILSYMKTGVCQKQHLKLLVAITQAKNKGLI  171 (190)
Q Consensus       107 ~~~~npCpiCrd~~~~IDYKNV~LL~qFIs~~tGkILprr~TGlC~KqQRkL~kAIKrAR~lGLL  171 (190)
                      ....+.|+||..++..|||||+++|++|||+ +|||+||++||+|+|+||+|+.||||||.+|||
T Consensus        12 ~rrrk~c~~~~~~~~~iDYKd~~~L~rfise-~GKI~prRiTG~sak~QR~la~AIKRAR~laLl   75 (75)
T COG0238          12 FRRRKVCRFTAEGIEEIDYKDVELLKRFISE-RGKILPRRITGTSAKHQRRLARAIKRARYLALL   75 (75)
T ss_pred             cccccccccccccCCccCccCHHHHHHHhcc-cCcccccccccccHHHHHHHHHHHHHHHHHhcC
Confidence            3467899999998899999999999999999 799999999999999999999999999999997

>PF01084 Ribosomal_S18: Ribosomal protein S18; InterPro: IPR001648 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=99.88  E-value=2.4e-23  Score=144.31  Aligned_cols=52  Identities=46%  Similarity=0.658  Sum_probs=49.9

Q ss_pred             CccccCcccHHHHhhcCCCCCCeecccccccCCHHHHHHHHHHHHHHHHcccc
Q psy1551         119 EYLIIHPYNIKLLEQFISPVNGEILSYMKTGVCQKQHLKLLVAITQAKNKGLI  171 (190)
Q Consensus       119 ~~~~IDYKNV~LL~qFIs~~tGkILprr~TGlC~KqQRkL~kAIKrAR~lGLL  171 (190)
                      +...|||||+.||+|||++ +|+|+||++||||+||||+|++|||+||++|||
T Consensus         3 ~~~~idykn~~lL~~Fi~~-~GkIl~rr~Tgl~~k~Qr~l~~aIkrAR~~gLl   54 (54)
T PF01084_consen    3 NNEYIDYKNVELLSQFISP-TGKILPRRITGLCAKQQRKLAKAIKRARQLGLL   54 (54)
T ss_dssp             SSSSSSSSSHHHHGCGBTT-SSSBSTHHHHTSTHHHHHHHHHHHHHHHHTTSS
T ss_pred             CCCcCCcCCHHHHHHHcCc-ccceehhhhccccHHHHHHHHHHHHHHHHhhCC
Confidence            4478999999999999999 799999999999999999999999999999997

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Evidence suggests that, in prokaryotes, the peptidyl transferase reaction is performed by the large subunit 23S rRNA, whereas proteins probably have a greater role in eukaryotic ribosomes. Most of the proteins lie close to, or on the surface of, the 30S subunit, arranged peripherally around the rRNA []. The small subunit ribosomal proteins can be categorised as primary binding proteins, which bind directly and independently to 16S rRNA; secondary binding proteins, which display no specific affinity for 16S rRNA, but its assembly is contingent upon the presence of one or more primary binding proteins; and tertiary binding proteins, which require the presence of one or more secondary binding proteins and sometimes other tertiary binding proteins. The small ribosomal subunit protein S18 is known to be involved in binding the aminoacyl-tRNA complex in Escherichia coli [], and appears to be situated at the tRNA A-site. Experimental evidence has revealed that S18 is well exposed on the surface of the E. coli ribosome, and is a secondary rRNA binding protein []. S18 belongs to a family of ribosomal proteins [] that includes: eubacterial S18; metazoan mitochondrial S18, algal and plant chloroplast S18; and cyanelle S18.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2UXD_R 3I8G_U 3UZ7_U 1N33_R 2XSY_R 3V24_R 3OGY_R 2XUY_R 2XFZ_R 3UXT_R ....

>KOG3162|consensus

Probab=99.76  E-value=5.3e-19  Score=145.77  Aligned_cols=63  Identities=33%  Similarity=0.516  Sum_probs=56.8

Q ss_pred             CCCccccCCcc-ccCcccHHHHhhcCCCCCCeecccccccCCHHHHHHHHHHHHHHHHccccCcc
Q psy1551         111 NPCPICRDEYL-IIHPYNIKLLEQFISPVNGEILSYMKTGVCQKQHLKLLVAITQAKNKGLITFD  174 (190)
Q Consensus       111 npCpiCrd~~~-~IDYKNV~LL~qFIs~~tGkILprr~TGlC~KqQRkL~kAIKrAR~lGLLPf~  174 (190)
                      ..|++|..++. .++||||.||+|||+++ |.||||++||||+|+||+|.+||++||.+||||+.
T Consensus        67 ~~c~~c~~~Vd~~~~yknv~iLsqFv~~~-G~il~RkiTGLc~k~Qrki~~aI~~A~~~GlmP~~  130 (159)
T KOG3162|consen   67 PQCILCTKGVDIKLSYKNVLLLSQFVSED-GGILPRKITGLCAKNQRKIERAIKRARAAGLMPVT  130 (159)
T ss_pred             ccCcccccCCCcccccCccchhhhhcccc-cceecchhhhhhHHHHHHHHHHHHHHHHhcccccc
Confidence            56999998842 34599999999999997 77999999999999999999999999999999944

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	190
2vqe_R	88	30S ribosomal protein S18; tRNA-binding, rRNA-bind	1e-05
3i1m_R	75	30S ribosomal protein S18; ribosome structure, pro	1e-05
3bbn_R	103	Ribosomal protein S18; small ribosomal subunit, sp	2e-05
3r8n_R	55	30S ribosomal protein S18; protein biosynthesis, R	5e-04

>2vqe_R 30S ribosomal protein S18; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: a.4.8.1 PDB: 1fka_R 1fjg_R 1gix_U* 1hnw_R* 1hnx_R* 1hnz_R* 1hr0_R 1ibk_R* 1ibl_R* 1ibm_R 1j5e_R 1jgo_U* 1jgp_U* 1jgq_U* 1ml5_U* 1n32_R* 1n33_R* 1n34_R 1n36_R 1xmo_R* ... Length = 88

 Score = 41.2 bits (97), Expect = 1e-05
 Identities = 17/62 (27%), Positives = 32/62 (51%), Gaps = 1/62 (1%)

Query: 112 PCPICRDEYLIIHPYNIKLLEQFISPVNGEILSYMKTGVCQKQHLKLLVAITQAKNKGLI 171
                  E+ +    N+++L++F+S   G+IL   +TG+  K+   L   I +A+  GL+
Sbjct: 21  KVKATLGEFDLRDYRNVEVLKRFLSE-TGKILPRRRTGLSGKEQRILAKTIKRARILGLL 79

Query: 172 TF 173
            F
Sbjct: 80  PF 81

>3i1m_R 30S ribosomal protein S18; ribosome structure, protein-RNA complex, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA-binding, antibiotic resistance; 3.19A {Escherichia coli k-12} PDB: 1vs7_R* 1vs5_R 3i1o_R 3i1q_R 3i1s_R 3i1z_R 3i21_R 3izv_V* 3izw_V* 3kc4_R 3or9_R 3ora_R 3sfs_R* 3uoq_R* 2qal_R* 1p6g_R 1p87_R 2aw7_R 2avy_R 2i2u_R ... Length = 75

 Score = 40.7 bits (96), Expect = 1e-05
 Identities = 15/62 (24%), Positives = 28/62 (45%), Gaps = 1/62 (1%)

Query: 112 PCPICRDEYLIIHPYNIKLLEQFISPVNGEILSYMKTGVCQKQHLKLLVAITQAKNKGLI 171
            C    +    I   +I  L+ +I+  +G+I+    TG   K   +L  AI +A+   L+
Sbjct: 10  FCRFTAEGVQEIDYKDIATLKNYITE-SGKIVPSRITGTRAKYQRQLARAIKRARYLSLL 68

Query: 172 TF 173
            +
Sbjct: 69  PY 70

>3bbn_R Ribosomal protein S18; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1 Length = 103

 Score = 40.8 bits (96), Expect = 2e-05
 Identities = 22/66 (33%), Positives = 30/66 (45%), Gaps = 7/66 (10%)

Query: 112 PCPICRDEYLIIHPYNIKLLEQFISPVNGEILSYMKTGVCQKQHLKLLVAITQAKNKGLI 171
             PI   +   I   N+ L+ +FIS   G+ILS     +  KQ   +  AI QA+   L 
Sbjct: 19  LPPIQSGDR--IDYRNMSLISRFISE-QGKILSRRVNRLTLKQQRLITSAIKQARILSL- 74

Query: 172 TFDLPF 177
              LPF
Sbjct: 75  ---LPF 77

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	190
3i1m_R	75	30S ribosomal protein S18; ribosome structure, pro	99.96
2vqe_R	88	30S ribosomal protein S18; tRNA-binding, rRNA-bind	99.96
3bbn_R	103	Ribosomal protein S18; small ribosomal subunit, sp	99.94
3r8n_R	55	30S ribosomal protein S18; protein biosynthesis, R	99.93

>3i1m_R 30S ribosomal protein S18; ribosome structure, protein-RNA complex, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA-binding, antibiotic resistance; 3.19A {Escherichia coli k-12} PDB: 1vs7_R* 1vs5_R 3i1o_R 3i1q_R 3i1s_R 3i1z_R 3i21_R 3izv_V* 3izw_V* 3kc4_R 3or9_R 3ora_R 3sfs_R* 3uoq_R* 4gaq_R* 4gas_R* 2qal_R* 1p6g_R 1p87_R 2aw7_R ...

Probab=99.96  E-value=1.3e-30  Score=190.36  Aligned_cols=68  Identities=22%  Similarity=0.287  Sum_probs=53.7

Q ss_pred             CCCCCccccCCccccCcccHHHHhhcCCCCCCeecccccccCCHHHHHHHHHHHHHHHHccccCcccCC
Q psy1551         109 TGNPCPICRDEYLIIHPYNIKLLEQFISPVNGEILSYMKTGVCQKQHLKLLVAITQAKNKGLITFDLPF  177 (190)
Q Consensus       109 ~~npCpiCrd~~~~IDYKNV~LL~qFIs~~tGkILprr~TGlC~KqQRkL~kAIKrAR~lGLLPf~vpf  177 (190)
                      .+++|+||++++..|||||++||++|||+ +|+|+||++||||+||||+|++|||+||.+|||||+.++
T Consensus         7 r~k~C~fc~~~~~~iDYknv~lL~~Fis~-~GkIlprr~TGlc~k~QR~l~~AIKrAR~~gLlP~~~~h   74 (75)
T 3i1m_R            7 RRKFCRFTAEGVQEIDYKDIATLKNYITE-SGKIVPSRITGTRAKYQRQLARAIKRARYLSLLPYTDRH   74 (75)
T ss_dssp             -------------CCSTTCHHHHGGGBCT-TCCBCCHHHHCCCHHHHHHHHHHHHHHHTTTSSCSSSCC
T ss_pred             CCCCCCcccCCCCcCCcCCHHHHHHHcCc-CCCCcCccccccCHHHHHHHHHHHHHHHHhccCCcCCCC
Confidence            46899999999999999999999999999 799999999999999999999999999999999999875

>2vqe_R 30S ribosomal protein S18; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: a.4.8.1 PDB: 1fka_R 1fjg_R 1gix_U* 1hnw_R* 1hnx_R* 1hnz_R* 1hr0_R 1ibk_R* 1ibl_R* 1ibm_R 1j5e_R 1jgo_U* 1jgp_U* 1jgq_U* 1ml5_U* 1n32_R* 1n33_R* 1n34_R 1n36_R 1xmo_R* ...

Probab=99.96  E-value=3e-30  Score=193.28  Aligned_cols=70  Identities=24%  Similarity=0.363  Sum_probs=66.7

Q ss_pred             cCCCCCccccCCccccCcccHHHHhhcCCCCCCeecccccccCCHHHHHHHHHHHHHHHHccccCcccCCc
Q psy1551         108 ATGNPCPICRDEYLIIHPYNIKLLEQFISPVNGEILSYMKTGVCQKQHLKLLVAITQAKNKGLITFDLPFR  178 (190)
Q Consensus       108 ~~~npCpiCrd~~~~IDYKNV~LL~qFIs~~tGkILprr~TGlC~KqQRkL~kAIKrAR~lGLLPf~vpf~  178 (190)
                      ..+++|+||.+++..|||||++||+||||+ +|+|+||++||||+||||+|++|||+||+||||||+.++.
T Consensus        17 ~r~k~C~~c~~~~~~iDYKnv~lL~~Fise-~GkIlprriTGlc~k~QR~l~~AIKrAR~lgLLP~~~~~v   86 (88)
T 2vqe_R           17 SRKAKVKATLGEFDLRDYRNVEVLKRFLSE-TGKILPRRRTGLSGKEQRILAKTIKRARILGLLPFTEKLV   86 (88)
T ss_dssp             CCSCCTTTSCCCEETTCTTCHHHHGGGBCS-SSCBCCHHHHCCCHHHHHHHHHHHHHHHHTTSSCSCCCEE
T ss_pred             CCCCCCCccCCCCCcCCcCCHHHHHHHccc-CCCCCchhhcCCCHHHHHHHHHHHHHHHHHhcCCccHhhc
Confidence            468899999999999999999999999999 7999999999999999999999999999999999998763

>3bbn_R Ribosomal protein S18; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1

Probab=99.94  E-value=8.9e-29  Score=190.30  Aligned_cols=76  Identities=26%  Similarity=0.251  Sum_probs=56.0

Q ss_pred             ecCCCCCccccCCccccCcccHHHHhhcCCCCCCeecccccccCCHHHHHHHHHHHHHHHHccccCcccCCc--ccccCC
Q psy1551         107 IATGNPCPICRDEYLIIHPYNIKLLEQFISPVNGEILSYMKTGVCQKQHLKLLVAITQAKNKGLITFDLPFR--EYNYKD  184 (190)
Q Consensus       107 ~~~~npCpiCrd~~~~IDYKNV~LL~qFIs~~tGkILprr~TGlC~KqQRkL~kAIKrAR~lGLLPf~vpf~--~ydy~~  184 (190)
                      ...+++||||..  ..||||||+||++|||+ +|+|+||++||||+||||+|++|||+||.||||||+.+..  .|+++|
T Consensus        14 ~~rr~~cpi~~~--~~IDYKnv~lL~~FIse-~GKIlpRRiTGlcaK~QR~l~~AIKrAR~laLLPy~~~~~~~~f~~~e   90 (103)
T 3bbn_R           14 SFRRRLPPIQSG--DRIDYRNMSLISRFISE-QGKILSRRVNRLTLKQQRLITSAIKQARILSLLPFLNNEKEKQFERTE   90 (103)
T ss_dssp             -----------C--CSSCCSCHHHHTTTSCS-SSSCCCSSSTTCCTTTTTTTHHHHHHHTTTTSSCTTCCCC--------
T ss_pred             cccCCCCCcCCC--CcCCcCCHHHHHHHhcc-CCCCcCccccCCCHHHHHHHHHHHHHHHHHhCCCcccCcchhhhhhhh
Confidence            346889999984  47999999999999999 7999999999999999999999999999999999999988  788876


Q ss_pred             c
Q psy1551         185 Y  185 (190)
Q Consensus       185 y  185 (190)
                      -
T Consensus        91 ~   91 (103)
T 3bbn_R           91 S   91 (103)
T ss_dssp             -
T ss_pred             c
Confidence            4

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	190
d2uubr1	70	a.4.8.1 (R:19-88) Ribosomal protein S18 {Thermus t	2e-11
d2qalr1	55	a.4.8.1 (R:19-73) Ribosomal protein S18 {Escherich	8e-11

>d2uubr1 a.4.8.1 (R:19-88) Ribosomal protein S18 {Thermus thermophilus [TaxId: 274]} Length = 70

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Ribosomal protein S18
family: Ribosomal protein S18
domain: Ribosomal protein S18
species: Thermus thermophilus [TaxId: 274]

 Score = 55.0 bits (133), Expect = 2e-11
 Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 1/61 (1%)

Query: 113 CPICRDEYLIIHPYNIKLLEQFISPVNGEILSYMKTGVCQKQHLKLLVAITQAKNKGLIT 172
                 E+ +    N+++L++F+S   G+IL   +TG+  K+   L   I +A+  GL+ 
Sbjct: 4   VKATLGEFDLRDYRNVEVLKRFLSE-TGKILPRRRTGLSAKEQRILAKTIKRARILGLLP 62

Query: 173 F 173
           F
Sbjct: 63  F 63

>d2qalr1 a.4.8.1 (R:19-73) Ribosomal protein S18 {Escherichia coli [TaxId: 562]} Length = 55

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Ribosomal protein S18
family: Ribosomal protein S18
domain: Ribosomal protein S18
species: Escherichia coli [TaxId: 562]

 Score = 53.0 bits (128), Expect = 8e-11
 Identities = 13/47 (27%), Positives = 25/47 (53%), Gaps = 1/47 (2%)

Query: 127 NIKLLEQFISPVNGEILSYMKTGVCQKQHLKLLVAITQAKNKGLITF 173
           +I  L+ +I+  +G+I+    TG   K   +L  AI +A+   L+ +
Sbjct: 6   DIATLKNYITE-SGKIVPSRITGTRAKYQRQLARAIKRARYLSLLPY 51

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	190
d2qalr1	55	Ribosomal protein S18 {Escherichia coli [TaxId: 56	99.93
d2uubr1	70	Ribosomal protein S18 {Thermus thermophilus [TaxId	99.93

>d2qalr1 a.4.8.1 (R:19-73) Ribosomal protein S18 {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Ribosomal protein S18
family: Ribosomal protein S18
domain: Ribosomal protein S18
species: Escherichia coli [TaxId: 562]

Probab=99.93  E-value=8.6e-27  Score=159.63  Aligned_cols=55  Identities=25%  Similarity=0.321  Sum_probs=52.3

Q ss_pred             ccCcccHHHHhhcCCCCCCeecccccccCCHHHHHHHHHHHHHHHHccccCcccCC
Q psy1551         122 IIHPYNIKLLEQFISPVNGEILSYMKTGVCQKQHLKLLVAITQAKNKGLITFDLPF  177 (190)
Q Consensus       122 ~IDYKNV~LL~qFIs~~tGkILprr~TGlC~KqQRkL~kAIKrAR~lGLLPf~vpf  177 (190)
                      .|||||+++|++|||+ +|+|+||++||+|+||||+|++|||+||.||||||+..+
T Consensus         1 ~iDYKn~~lL~~Fis~-~GkI~~rr~Tgl~~k~Qr~l~~aIkrAR~~gLlP~~~~h   55 (55)
T d2qalr1           1 EIDYKDIATLKNYITE-SGKIVPSRITGTRAKYQRQLARAIKRARYLSLLPYTDRH   55 (55)
T ss_dssp             CCCSSCHHHHGGGBCT-TSSBCCSTTTCCCHHHHHHHHHHHHHHHHTTSSCSSSCC
T ss_pred             CCCcccHHHHHHHcCC-CCeEeCCccCCCCHHHHHHHHHHHHHHHHhccCCcccCC
Confidence            3899999999999999 599999999999999999999999999999999998753

>d2uubr1 a.4.8.1 (R:19-88) Ribosomal protein S18 {Thermus thermophilus [TaxId: 274]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Ribosomal protein S18
family: Ribosomal protein S18
domain: Ribosomal protein S18
species: Thermus thermophilus [TaxId: 274]

Probab=99.93  E-value=8.1e-27  Score=166.78  Aligned_cols=67  Identities=25%  Similarity=0.384  Sum_probs=61.6

Q ss_pred             CCCccccCCccccCcccHHHHhhcCCCCCCeecccccccCCHHHHHHHHHHHHHHHHccccCcccCCc
Q psy1551         111 NPCPICRDEYLIIHPYNIKLLEQFISPVNGEILSYMKTGVCQKQHLKLLVAITQAKNKGLITFDLPFR  178 (190)
Q Consensus       111 npCpiCrd~~~~IDYKNV~LL~qFIs~~tGkILprr~TGlC~KqQRkL~kAIKrAR~lGLLPf~vpf~  178 (190)
                      ..|..+..++..|||||+.+|++||++ +|+|+||++||+|++|||+|++|||+||.||||||+..+.
T Consensus         2 ~k~k~~~~~~~~iDYKn~~lL~~Fis~-~GkIlprr~TGl~~k~Qr~l~~aIkrAR~~gLlPy~~~~v   68 (70)
T d2uubr1           2 AKVKATLGEFDLRDYRNVEVLKRFLSE-TGKILPRRRTGLSAKEQRILAKTIKRARILGLLPFTEKLV   68 (70)
T ss_dssp             CCTTTSSCSCCTTCTTCHHHHGGGBCS-SSCBCCHHHHCCCHHHHHHHHHHHHHHHHTTSSCSCCCEE
T ss_pred             CCccccccccCccCccCHHHHHHhcCC-CCeEecCccCCCCHHHHHHHHHHHHHHHHHhcccccHhhc
Confidence            356667778889999999999999999 6999999999999999999999999999999999998764