Psyllid ID: psy15524
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 930 | 2.2.26 [Sep-21-2011] | |||||||
| Q9H8H2 | 851 | Probable ATP-dependent RN | yes | N/A | 0.595 | 0.650 | 0.450 | 1e-138 | |
| Q86B47 | 975 | Probable ATP-dependent RN | yes | N/A | 0.530 | 0.505 | 0.440 | 1e-134 | |
| Q7XJN0 | 609 | DEAD-box ATP-dependent RN | yes | N/A | 0.539 | 0.824 | 0.387 | 4e-98 | |
| O60173 | 709 | ATP-dependent RNA helicas | yes | N/A | 0.535 | 0.702 | 0.367 | 4e-93 | |
| Q0DLB9 | 591 | DEAD-box ATP-dependent RN | yes | N/A | 0.531 | 0.835 | 0.355 | 3e-90 | |
| Q6C835 | 799 | ATP-dependent RNA helicas | yes | N/A | 0.538 | 0.627 | 0.357 | 1e-87 | |
| A3LWH3 | 733 | ATP-dependent RNA helicas | yes | N/A | 0.589 | 0.747 | 0.347 | 6e-86 | |
| Q59S50 | 727 | ATP-dependent RNA helicas | N/A | N/A | 0.586 | 0.749 | 0.330 | 1e-84 | |
| Q0CF43 | 769 | ATP-dependent RNA helicas | N/A | N/A | 0.580 | 0.702 | 0.330 | 2e-84 | |
| A1CB55 | 755 | ATP-dependent RNA helicas | N/A | N/A | 0.562 | 0.692 | 0.346 | 2e-84 |
| >sp|Q9H8H2|DDX31_HUMAN Probable ATP-dependent RNA helicase DDX31 OS=Homo sapiens GN=DDX31 PE=1 SV=2 | Back alignment and function desciption |
|---|
Score = 493 bits (1268), Expect = e-138, Method: Compositional matrix adjust.
Identities = 272/604 (45%), Positives = 371/604 (61%), Gaps = 50/604 (8%)
Query: 362 SSLFQNNPDIPNVPTRRLKPVSEALFAPTSYEEFPGIHPFMKKNLNEGMNITQVTTVQQL 421
SSLF+NNPDIP + +K V E +F ++ E G+HP + +N + ++ +T+VQ+
Sbjct: 202 SSLFKNNPDIPELHRPVVKQVQEKVFTSAAFHEL-GLHPHLISTINTVLKMSSMTSVQKQ 260
Query: 422 SIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQ 481
SI +L+G D LVRSQTGSGKTLAY IP++Q LQ M KI R DG YA++++PTRELALQ
Sbjct: 261 SIPVLLEGRDALVRSQTGSGKTLAYCIPVVQSLQAMESKIQRSDGPYALVLVPTRELALQ 320
Query: 482 TLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFS 541
+ + KL K FTWIVP L GGEK KSEKAR+RKGI+IL++TPGRL+DH K T+ + FS
Sbjct: 321 SFDTVQKLLKPFTWIVPGVLMGGEKRKSEKARLRKGINILISTPGRLVDHIKSTKNIHFS 380
Query: 542 KVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNP 601
++ LV DEADRILD G+E+DI L + + + Q++LLSATLT V RLA ++L +P
Sbjct: 381 RLRWLVFDEADRILDLGFEKDITVILNAVNAECQKRQNVLLSATLTEGVTRLADISLHDP 440
Query: 602 IQIDAADSTD-----------------IHNTTDSLVIPDSLKQHFIVTPPKLRLVALASF 644
+ I D + + DS IP+SLKQH V P KLRLV LA+F
Sbjct: 441 VSISVLDKSHDQLNPKDKAVQEVCPPPAGDKLDSFAIPESLKQHVTVVPSKLRLVCLAAF 500
Query: 645 ILGKCQNVNEDEESKMLVFMATQDMADYHTEL-LSTVLGENIA--------------FFK 689
IL KC+ +E+ KM+VF ++ ++ ++H L L T+L + A F +
Sbjct: 501 ILQKCKF---EEDQKMVVFFSSCELVEFHYSLFLQTLLSSSGAPASGQLPSASMRLKFLR 557
Query: 690 LHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVG 749
LHG M Q ERT VF+ F + GVL+CTDVAARGLDLP V WIVQY APSS +Y+HR+G
Sbjct: 558 LHGGMEQEERTAVFQEFSHSRRGVLLCTDVAARGLDLPQVTWIVQYNAPSSPAEYIHRIG 617
Query: 750 RTARVGHEGSSLLFLIPSEVKLVEELQNRRIRIEEIKLKDCL-----QNLLSVKMEGDLS 804
RTAR+G GSSLL L PSE + V L + +I + EIK++D L + K G
Sbjct: 618 RTARIGCHGSSLLILAPSEAEYVNSLASHKINVSEIKMEDILCVLTRDDCFKGKRWGAQK 677
Query: 805 RLADG--NVETAATALQMSFESAVLQQKILHTSACKGYTSWVRFYASYSKDLRHIFNFKQ 862
A G + AT LQ FE V + + A K S+++ YA+Y ++L+HIF+ +
Sbjct: 678 SHAVGPQEIRERATVLQTVFEDYVHSSERRVSWAKKALQSFIQAYATYPRELKHIFHVRS 737
Query: 863 IHLGHFAKSFALRDAPSVISGIGKPKNKEELKNKKMAINKEKSFKQRGNFSKKQML-SEF 921
+HLGH AKSF LRDAP +S + + K K +K + K + S ++L SE+
Sbjct: 738 LHLGHVAKSFGLRDAPRNLSALTRKKRKAHVKRPDL------HKKTQSKHSLAEILRSEY 791
Query: 922 DSGL 925
SG+
Sbjct: 792 SSGM 795
|
Probable ATP-dependent RNA helicase. Homo sapiens (taxid: 9606) EC: 3EC: .EC: 6EC: .EC: 4EC: .EC: 1EC: 3 |
| >sp|Q86B47|Y8611_DROME Probable ATP-dependent RNA helicase CG8611 OS=Drosophila melanogaster GN=CG8611 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 480 bits (1236), Expect = e-134, Method: Compositional matrix adjust.
Identities = 248/563 (44%), Positives = 359/563 (63%), Gaps = 70/563 (12%)
Query: 377 RRLKPVSEALFAPTSYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRS 436
R +KPV E +F + G+HP KNL + ++I ++T+VQQ +I +L G DVLVRS
Sbjct: 314 RAVKPVKETIFTGSKISTL-GLHPHAVKNLEDLLSIRELTSVQQKTIPEVLQGKDVLVRS 372
Query: 437 QTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWI 496
QTGSGKTLAYA+P+++ LQ+ +P+I RKDG+ A++I+PTREL +QT E+ KL K +TWI
Sbjct: 373 QTGSGKTLAYALPLVELLQKQQPRIQRKDGVLALVIVPTRELVMQTYELIQKLVKPYTWI 432
Query: 497 VPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILD 556
VP L GGE KSEKAR+RKGI+IL+ TPGRL+DH HT + K +K++ L+LDEADR+L+
Sbjct: 433 VPGSLLGGESRKSEKARLRKGINILIGTPGRLVDHLLHTASFKLTKLQFLILDEADRLLE 492
Query: 557 QGYERDIAEFLEILKKQK--------PQFQSILLSATLTPAVQRLAGMTLQNPIQIDAAD 608
GYERD+ + +E + KQ+ PQ Q +LLSATLT VQ+LAG+TL+NP+ ID +D
Sbjct: 493 LGYERDVKQLVEAIDKQRAECEDKELPQLQRMLLSATLTSQVQQLAGLTLKNPLYIDNSD 552
Query: 609 --------STDIH--------------------NTTDSLVIPDSLKQHFIVTPPKLRLVA 640
S D + + T L IP++L+ ++V PPKLRLVA
Sbjct: 553 EAASAALKSKDGYQKETIEALLEVDDGLGEYQEDVTGVLSIPENLQLSYVVVPPKLRLVA 612
Query: 641 LASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLG------------------ 682
L+S + + ++ K +VFM+T +M ++H ++L+ L
Sbjct: 613 LSSLLAKEVD--ASPKQFKAIVFMSTTEMVNFHHDMLNEALTRRVLDEEDEQEKGDSDDD 670
Query: 683 ------ENIAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYT 736
+ + FFKLHGSM+Q+ER VF+ FR S VL+ TDV RG+D+P + +VQYT
Sbjct: 671 GDIPLLQGLRFFKLHGSMTQTERQGVFRGFRDCASCVLLATDVVGRGIDVPDIKLVVQYT 730
Query: 737 APSSSTDYVHRVGRTARVGHEGSSLLFLIPSEVKLVEELQNRRIRIEEIKLKDCLQNLLS 796
P ++ D+VHRVGRTAR G +G ++LFL PSE + V L+ +RIRI++ + LQ LL
Sbjct: 731 PPQTTADFVHRVGRTARAGRKGRAVLFLTPSEAQFVRHLEKKRIRIQQGDMYAYLQTLLP 790
Query: 797 VKMEGDLSRLADGNVETAATALQMSFESAVLQQKILHTSACKGYTSWVRFYASYSKDLRH 856
+ D +R V+ AA+ LQ F++ + + LH +CK + SW++FY+++ K+L+
Sbjct: 791 ---KDDEAR----TVQEAASNLQHKFQTLLEDDRELHDKSCKAFVSWMKFYSTFPKELKP 843
Query: 857 IFNFKQIHLGHFAKSFALRDAPS 879
IFN + H+GHFAKSFAL++APS
Sbjct: 844 IFNVRIAHMGHFAKSFALKEAPS 866
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Probable ATP-dependent RNA helicase. Drosophila melanogaster (taxid: 7227) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 1 EC: 3 |
| >sp|Q7XJN0|RH17_ARATH DEAD-box ATP-dependent RNA helicase 17 OS=Arabidopsis thaliana GN=RH17 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 359 bits (922), Expect = 4e-98, Method: Compositional matrix adjust.
Identities = 221/571 (38%), Positives = 312/571 (54%), Gaps = 69/571 (12%)
Query: 385 ALFAPTSYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTL 444
LFA S+ G+ + L E M T VQ +I IL G DVLV + TG+GKT+
Sbjct: 24 GLFASCSFSSL-GLDTKLSDQLKERMGFEAPTLVQAQAIPVILSGRDVLVNAPTGTGKTI 82
Query: 445 AYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGG 504
AY P+I LQ PK+ R G +A++I+PTREL LQ E KL F WIVP ++ GG
Sbjct: 83 AYLAPLIHHLQGHSPKVDRSHGTFALVIVPTRELCLQVYETLEKLLHRFHWIVPGYVMGG 142
Query: 505 EKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIA 564
EK EKAR+RKGISIL+ATPGRLLDH K+T + + ++ DEAD IL+ GY ++I
Sbjct: 143 EKKAKEKARLRKGISILIATPGRLLDHLKNTASFVHKNLRWVIFDEADSILELGYGKEIE 202
Query: 565 EFLEILKKQKP-------------QFQSILLSATLTPAVQRLAGMTLQNPIQID------ 605
+ +++L + Q Q++LLSATL V LA ++L +P+ I
Sbjct: 203 QIIKLLGSGQNEQGEEDDIVPKGIQKQNLLLSATLNDKVNDLAKLSLDDPVMIGLDNTKL 262
Query: 606 ---------AADSTDIHNT-----------TDSLVIPDSLKQHFIVTPPKLRLVALASFI 645
AA +D + ++ IP L Q ++ P RLVAL S +
Sbjct: 263 QQNLSIESPAAPDSDAEDMVIHVNKSANPLSEDYGIPSQLVQRYLRVPCGARLVALLSVL 322
Query: 646 LGKCQNVNEDEES-KMLVFMATQDMADYHTELLSTVL----------GENIAF-----FK 689
+N+ E E S K++VF +T+D D+H LLS G F F+
Sbjct: 323 ----KNLFEREASQKVVVFFSTRDAVDFHYSLLSEFQWPPNSETEEEGTKELFLKCKTFR 378
Query: 690 LHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVG 749
LHGSM Q +R F TF++ K VL+ TDVAARGLD P V I+QY P +T+YVHRVG
Sbjct: 379 LHGSMEQEDRRSAFGTFKTEKQAVLLSTDVAARGLDFPKVRCIIQYDCPGEATEYVHRVG 438
Query: 750 RTARVGHEGSSLLFLIPSEVKLVEELQNRRIRIEEIKLKDCLQNLLSVKMEGDLSRLADG 809
RTAR+G +G +LLFL P E+ ++EL+ + E L L + G++ R+
Sbjct: 439 RTARIGEKGEALLFLQPIEIDYLKELKKHGASLTEYPLMKVLDKF---PIPGNMPRIKKV 495
Query: 810 -NVETA--ATALQMSFESAVLQQKILHTSACKGYTSWVRFYASYSKDLRHIFNFKQIHLG 866
++E+ +LQ + ES + + + A + SWVR YA++ +L+ IF K++HLG
Sbjct: 496 LSLESHPWVISLQRALESLTYAEPKMKSLAKNAFVSWVRGYAAHKGELKSIFVVKKLHLG 555
Query: 867 HFAKSFALRDAPSVISGIGKPKNKEELKNKK 897
H AKSFALR+ PS+ +GK +KE +K K+
Sbjct: 556 HVAKSFALREQPSL---VGKSHHKETMKRKR 583
|
Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 1 EC: 3 |
| >sp|O60173|DBP7_SCHPO ATP-dependent RNA helicase dbp7 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=dbp7 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 343 bits (880), Expect = 4e-93, Method: Compositional matrix adjust.
Identities = 205/558 (36%), Positives = 307/558 (55%), Gaps = 60/558 (10%)
Query: 384 EALFAPTSYEEFPGIH--PFMKKNLNEGMNITQVTTVQQLSIQPIL--DGGDVLVRSQTG 439
EA AP F G+ + +LN MNI+ T +Q + +L D D + +QTG
Sbjct: 129 EASNAPIKTTNFAGVQLDTQLADHLNNKMNISAPTAIQSCCLPALLNTDDKDAFIEAQTG 188
Query: 440 SGKTLAYAIPIIQKLQEMRPKI-SRKDGIYAVIILPTRELALQTLEIFTKLCKS--FTWI 496
SGKTLAY +PI+Q+L + + +R GIYAVI+ PTREL Q + KL + WI
Sbjct: 189 SGKTLAYLLPIVQRLIRLPKNLHTRTSGIYAVIMAPTRELCQQIYNVANKLNNNPLSHWI 248
Query: 497 VPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILD 556
V + GGEK KSEKARIRKG++IL+ TPGRL DH ++TE L S+V +VLDE DR++D
Sbjct: 249 VSCNVIGGEKKKSEKARIRKGVNILIGTPGRLADHLENTEALDVSQVRWVVLDEGDRLMD 308
Query: 557 QGYERDIAEFLEILKKQKPQFQ----------SILLSATLTPAVQRLAGMTLQNPIQIDA 606
G+E + + L L+ Q + ++L SAT+ V+RL+ L++ + +
Sbjct: 309 MGFEETLTKILSYLESQSSIIKKDLSIPSRKVTMLCSATMKDTVKRLSDSALKDALYLK- 367
Query: 607 ADSTDIHNTTDSLV-IPDSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMA 665
S+ + T D P+ L Q ++V PPKLRLV+L + + ++ K+++F++
Sbjct: 368 --SSIVEETNDGYSQAPEQLLQRYVVVPPKLRLVSLVALLRSHVRSY-----KKIIIFLS 420
Query: 666 TQDMADYHTELLSTVL----------------GENIA------------FFKLHGSMSQS 697
D D+H E + G+ I+ ++LHGS+SQ
Sbjct: 421 CSDSVDFHFEAFRCAINADEMEEAVKEKPDSEGDIISNAPALRIDGKSNVYRLHGSLSQQ 480
Query: 698 ERTEVFKTFRSVK---SGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARV 754
RT F S + S +L+CTDVAARGLDLP VD +VQY AP S+ DY+HR+GRTAR
Sbjct: 481 IRTSTLNLFSSSEDSGSHILLCTDVAARGLDLPNVDLVVQYDAPFSTDDYLHRIGRTARA 540
Query: 755 GHEGSSLLFLIPSEVKLVEELQNRRIRIEEIKLKDCLQNLLSVKMEGDLSRLADGNVETA 814
GH G++++FL+P E + + L++ + ++ + LLS + D +
Sbjct: 541 GHNGAAIMFLLPKESEYINLLKS-SVSANILEQPNGPSGLLSAGFSQGKTNTND--WQDR 597
Query: 815 ATALQMSFESAVLQQKILHTSACKGYTSWVRFYASYSKDLRHIFNFKQIHLGHFAKSFAL 874
AT Q+ E +L+ + + A + +TS+VR YA++ R IFN + +HLGH AKSFAL
Sbjct: 598 ATEWQLELERFILENEPMRNIAKRAFTSYVRAYATHLSSERSIFNMRDLHLGHIAKSFAL 657
Query: 875 RDAPSVISGIGKPKNKEE 892
R+AP ISG K +++
Sbjct: 658 REAPGKISGANSSKPRKQ 675
|
ATP-binding RNA helicase involved in the biogenesis of 60S ribosomal subunits and is required for the normal formation of 25S and 5.8S rRNAs. Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 1 EC: 3 |
| >sp|Q0DLB9|RH17_ORYSJ DEAD-box ATP-dependent RNA helicase 17 OS=Oryza sativa subsp. japonica GN=Os05g0110500 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 333 bits (855), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 196/551 (35%), Positives = 298/551 (54%), Gaps = 57/551 (10%)
Query: 384 EALFAPTSYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKT 443
E LFA S+ + G+HP + +L + M T +Q +I + G +LV++ TG+GKT
Sbjct: 17 EGLFASCSFTDL-GLHPTLCAHLQDKMGFQAPTRIQAQAIPVAMSGQHMLVKAATGTGKT 75
Query: 444 LAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTG 503
LAY PI+ LQ P++ R DG +A++++PTREL LQ I +L F W+VP ++ G
Sbjct: 76 LAYLAPIVHLLQMREPRVERTDGTFALVLVPTRELCLQVYGIAQQLVHRFHWLVPGYIMG 135
Query: 504 GEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDI 563
GE EKAR+RKGISIL+ATPGRLLDH +HT + + + +V DEAD IL+ G+ + +
Sbjct: 136 GENRAKEKARLRKGISILIATPGRLLDHLQHTSSFVYPNMRWIVFDEADSILELGFGKAL 195
Query: 564 AEFLEIL-----------KKQKP-QFQSILLSATLTPAVQRLAGMTLQNPIQI------- 604
+ LE L K +P + Q++LLSATL V RLA ++L+NP+ I
Sbjct: 196 EDILEHLGSRNDTSNQNKNKMEPMKRQNLLLSATLNEKVNRLAKISLKNPVMIGLDEQNS 255
Query: 605 -------------DAADSTDIHNTT-----DSLVIPDSLKQHFIVTPPKLRLVALASFIL 646
D + + HN T D +P L Q ++ RL L + +
Sbjct: 256 SAHGKNHTSLLSDDEEEILEKHNVTVEQAVDDFKLPAQLVQRYVKVSCGSRLAILLTIL- 314
Query: 647 GKCQNVNEDEES-KMLVFMATQDMADYHTELLSTVLGE--------------NIAFFKLH 691
+++ E + S K++VF++T D D+H +LS + + F+LH
Sbjct: 315 ---KSLFERQLSHKVVVFLSTCDSVDFHHTVLSQLEWSPGLQLDTDKKQKFISCKVFRLH 371
Query: 692 GSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRT 751
G+M Q +R + F F S KS +L+ TDVAARGLD P V I+QY +P +++YVHRVGRT
Sbjct: 372 GNMDQDDRKKSFLGFSSEKSAILVSTDVAARGLDFPKVKCIIQYDSPGEASEYVHRVGRT 431
Query: 752 ARVGHEGSSLLFLIPSEVKLVEELQNRRIRIEEIKLKDCLQNLLSVKMEGDLSRLADGNV 811
AR+G +G +LLFL P E + +L+ + E L+ L + + ++
Sbjct: 432 ARIGEKGEALLFLQPIETDYLRDLELHGASLTEYPLQKVLDSFPVNGQRLHKRKQISLDM 491
Query: 812 ETAATALQMSFESAVLQQKILHTSACKGYTSWVRFYASYSKDLRHIFNFKQIHLGHFAKS 871
+LQ + ES V + A + SWVR Y ++ +L+ IF K++HLGH A+S
Sbjct: 492 HPWIMSLQRALESFVTSEDTTKKLARDAFCSWVRAYTAHRGELKKIFMVKKLHLGHVARS 551
Query: 872 FALRDAPSVIS 882
F L++ PS++
Sbjct: 552 FGLKEQPSLLG 562
|
Oryza sativa subsp. japonica (taxid: 39947) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 1 EC: 3 |
| >sp|Q6C835|DBP7_YARLI ATP-dependent RNA helicase DBP7 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=DBP7 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 325 bits (832), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 200/560 (35%), Positives = 321/560 (57%), Gaps = 59/560 (10%)
Query: 409 GMNITQVTTVQQLSIQPILDG-GDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGI 467
GM + + T +Q+ +I ++ D+ V++QTGSGKTLA+ +P+++++ +SR+ G+
Sbjct: 250 GMQLAKPTKIQRATIPRLIQRERDLFVQAQTGSGKTLAFVLPVLERIMSC-DDVSRETGL 308
Query: 468 YAVIILPTRELALQTLEIFTKLC-KSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPG 526
+AVI+ PTREL Q + LC K+ WIVP + GGEK KSEKARIRKG++ILVATPG
Sbjct: 309 FAVILTPTRELTTQIYSVLETLCRKACPWIVPGIVIGGEKKKSEKARIRKGVNILVATPG 368
Query: 527 RLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFL----------------EIL 570
RL DH +TE L S+V +VLDE DR+++ G+E I + L +I
Sbjct: 369 RLADHFDNTEALDLSQVRWVVLDEGDRLMELGFEETITKILRTIEWKSVLRGENYLKDIP 428
Query: 571 KKQKP---QFQSILLSATLTPAVQRLAGMTLQNP--IQIDAADSTDIHNTTDSLVIPDSL 625
K KP + ++L SAT+ V L TL++ + D+ + + ++ P L
Sbjct: 429 KNLKPLPSRRVTVLCSATMKGGVTELGKSTLKDADWVSNDSVEDALAETSVETFSAPSQL 488
Query: 626 KQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLST------ 679
Q ++V P KLRLV L + G +E +K++VF++ D D+H ++LS
Sbjct: 489 VQEWVVVPAKLRLVTLLGALRGDILQSSEKTNTKVIVFLSCSDSVDFHFDVLSRDGSQIN 548
Query: 680 ---------VLGENI--AFFKLHGSMSQSERTEVFKTF-RSVKSGVLICTDVAARGLDLP 727
+L +++ + +KLHGS+SQ RT +F ++ +L+CTDVA+RGLDLP
Sbjct: 549 KMDTAKTAPLLLDDVSTSVYKLHGSLSQQARTATLASFAKNSTPSILLCTDVASRGLDLP 608
Query: 728 LVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIP-SEVKLVEELQNRRIRIEEIK 786
+ +++Y P S D++HRVGRTAR G +G +LLFL+P +E VE+L+ +++K
Sbjct: 609 KITHVIEYDPPFSIEDHLHRVGRTARAGQDGRALLFLLPGAEEGYVEKLKQS----QQMK 664
Query: 787 LKDCLQNLLSVKMEGDLSRLADGNVETAATALQMSFESAVLQQKILHTSACKGYTSWVRF 846
K +N+L+ G + AAT + E VL + A +G+TS +R
Sbjct: 665 -KTTYENILAAGFGGK-------GWDFAATNYHLDVERWVLGDETALDRARRGFTSHIRA 716
Query: 847 YASYSKDLRHIFNFKQIHLGHFAKSFALRDAPSVISGIGKPKNKEELK-NKKMAINKEKS 905
YA++ + +FN + +HLGH AKSFALR+AP +GK K+ E++K NK ++++ ++
Sbjct: 717 YATHIAAEKDMFNVRMLHLGHLAKSFALREAP---GKLGKKKDPEKIKVNKDGSLDETQA 773
Query: 906 FKQRGNFSKKQMLSEFDSGL 925
K+ + S+K + + +S +
Sbjct: 774 RKKMLDRSRKHVYNSGESAM 793
|
ATP-binding RNA helicase involved in the biogenesis of 60S ribosomal subunits and is required for the normal formation of 25S and 5.8S rRNAs. Yarrowia lipolytica (strain CLIB 122 / E 150) (taxid: 284591) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 1 EC: 3 |
| >sp|A3LWH3|DBP7_PICST ATP-dependent RNA helicase DBP7 OS=Scheffersomyces stipitis (strain ATCC 58785 / CBS 6054 / NBRC 10063 / NRRL Y-11545) GN=DPB7 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 319 bits (818), Expect = 6e-86, Method: Compositional matrix adjust.
Identities = 219/630 (34%), Positives = 329/630 (52%), Gaps = 82/630 (13%)
Query: 361 ISSLFQNNPDIPNVPTRRLKPVSEALFAPT-------SYEEFPGIHPFMKKNLNEGMNIT 413
+SSLF +N + + K E + P+ S E GI+ + K+L E +
Sbjct: 109 VSSLFTSNQSSSQL--KVTKESDEKTYLPSNAPVEDASTFEGLGINERLSKHLTETLRFK 166
Query: 414 QVTTVQQLSIQPILDGG-DVLVRSQTGSGKTLAYAIPIIQKLQ-EMRPKISRKDGIYAVI 471
T VQ+ I +L D+ +++QTGSGKTL++ +PI KL E + KI+R G++AVI
Sbjct: 167 NPTKVQKSVIPTMLSTERDLFIKAQTGSGKTLSFLLPIFHKLMMENKHKINRDSGLFAVI 226
Query: 472 ILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDH 531
+ PTRELA Q + L + + IVP + GGEK KSEKARIRKG++ILV TPGRL DH
Sbjct: 227 LTPTRELATQIYGVLETLTRCYHHIVPGIVIGGEKKKSEKARIRKGVNILVGTPGRLADH 286
Query: 532 CKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQS------------ 579
++TE+L S++ L+LDE D++++ G+E I + ++ + +S
Sbjct: 287 MENTESLDISQLRWLILDEGDKLVELGFEETITKITNLITRNSQIMESMHKWQGLPVRRI 346
Query: 580 -ILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRL 638
+L SAT+ V++L + L NP I S+ H ++ + PD L Q+ +V PPKLRL
Sbjct: 347 NLLCSATMQNNVEKLGSIILNNPEMISDGSSSGKH--SEEVTAPDQLIQNVVVVPPKLRL 404
Query: 639 VALASFILGKCQN--VNEDEESKMLVFMATQDMADYHTEL------------------LS 678
V L++ IL K + + ++ +VF + D ++H ++ L
Sbjct: 405 VTLSA-ILKKISSDMSGTNNSTRTIVFFSCSDSVNFHFDVFTRGGNTFKKVKNDESGKLE 463
Query: 679 TV--------LGENIAFFKLHGSMSQSERTEVFKTF-RSVKSG--VLICTDVAARGLDLP 727
TV +G+ A +KLHGS+SQ RT + F + KS +L CTDVA+RGLDLP
Sbjct: 464 TVEVENDTPLIGQGTAVYKLHGSLSQQTRTSTLQAFIKDSKSNHSILFCTDVASRGLDLP 523
Query: 728 LVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPS--EVKLVEELQ-------NR 778
+ +++Y P + D++HR+GR+ARVG EG++ LFL+P E + +LQ N
Sbjct: 524 NIASVIEYDPPFTIDDHLHRIGRSARVGKEGTATLFLLPGNEEGYVDGKLQVVHPKEGNL 583
Query: 779 RIRIEEIKLKDCL---QNLLSVKMEGDLSRLADGNVETAATALQMSFESAVLQQKILHTS 835
RI E LKD N K + + +G + AT + E +L+ H
Sbjct: 584 RIVNYENYLKDGFSAKSNNEDTKKKSKDPKSREGKWDIHATTWHLDIERWLLEDSGAHDK 643
Query: 836 ACKGYTSWVRFYASYSKDLRHIFNFKQIHLGHFAKSFALRDAP----------SVISGIG 885
A + +TS +R YA++ R+ FN K +HLGH AKSF LR+ P S I G
Sbjct: 644 AVQAFTSHIRAYATHLSSERNYFNVKLLHLGHLAKSFGLRETPKKLGKSVESNSGIQGAS 703
Query: 886 KPKNKEELKNK--KMAINKEKSFKQRGNFS 913
K KE+ + K +MA KS N+S
Sbjct: 704 KKTKKEDPRKKMLRMAKMALKSNSDEFNYS 733
|
ATP-binding RNA helicase involved in the biogenesis of 60S ribosomal subunits and is required for the normal formation of 25S and 5.8S rRNAs. Scheffersomyces stipitis (strain ATCC 58785 / CBS 6054 / NBRC 10063 / NRRL Y-11545) (taxid: 322104) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 1 EC: 3 |
| >sp|Q59S50|DBP7_CANAL ATP-dependent RNA helicase DBP7 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=DBP7 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 315 bits (806), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 213/644 (33%), Positives = 335/644 (52%), Gaps = 99/644 (15%)
Query: 361 ISSLFQNNPDIPNVPTRRLKPVS---EALFAPTSY-----EEFPGI--HPFMKKNLNEGM 410
+SSLF NN PT L P S E + P++ F G+ + + +L + +
Sbjct: 100 VSSLFTNNQ-----PTSHLAPTSTTKELTYLPSNAPMKDATNFSGLGLNEKLSIHLTDHL 154
Query: 411 NITQVTTVQQLSIQPILDG-GDVLVRSQTGSGKTLAYAIPIIQKL-QEMRPKISRKDGIY 468
T +QQL I ++ D+ V++QTGSGKTLA+ +PI KL +E + KI+R+ G++
Sbjct: 155 RFMHPTKIQQLVIPSLISTENDLFVKAQTGSGKTLAFVLPIFHKLMRENKFKINRESGLF 214
Query: 469 AVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRL 528
A+I+ PTRELA Q + L + WIVP + GGEK KSEKAR+RKG +ILVATPGRL
Sbjct: 215 AIILTPTRELATQIYGVLETLTRCHHWIVPGIVIGGEKKKSEKARLRKGCNILVATPGRL 274
Query: 529 LDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQK------PQFQ---- 578
DH ++T+TL S++ LVLDE D++++ G+E IA+ + ++Q
Sbjct: 275 ADHLENTKTLDISQLRWLVLDEGDKLMELGFEDTIAQITAKIDSNSKIADTAEKWQGLPS 334
Query: 579 ---SILLSATLTPAVQRLAGMTLQNP--IQIDAAD-----STDIHNTTDSLVIPDSLKQH 628
++L SATL V++L + L++P I ++ A S D T + PD L Q+
Sbjct: 335 RRINMLCSATLHSNVKKLGSIVLKDPEMISVETASVAGTVSFDETIATTTSTAPDQLIQN 394
Query: 629 FIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLS---------- 678
+V PPKLRLV L + +L +++ + +VF + D D+H ++ +
Sbjct: 395 VVVVPPKLRLVTLDALLL----KISKHSAERTIVFFSCSDSVDFHFDVFTRDGKKFKKVT 450
Query: 679 --------TV-----------------LGENIAFFKLHGSMSQSERTEVFKTF---RSVK 710
TV L +N +KLHGS+SQ R ++F +
Sbjct: 451 DEETGEVKTVLVSPEDDENDGLLTAPQLSDNTIIYKLHGSLSQQTRASTLQSFVKDNNSY 510
Query: 711 SGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPSEVK 770
+ +L CTDVA+RGLDLP V +++Y P + D++HR+GR+AR+G+EG++ LFL+P
Sbjct: 511 NKILFCTDVASRGLDLPNVANVIEYDPPFTIDDHLHRIGRSARLGNEGNATLFLLPG--- 567
Query: 771 LVEELQNRRIRIEEIKLKDC-LQNLLSVKMEGDLSRLADGNVETA----------ATALQ 819
+ E + ++R+ + + ++N + EG A GN+++ AT
Sbjct: 568 IEEGYVDGKLRVAHPREGNLRVKNYEKILQEG----FAQGNIKSKDNKLGKWDIHATTWH 623
Query: 820 MSFESAVLQQKILHTSACKGYTSWVRFYASYSKDLRHIFNFKQIHLGHFAKSFALRDAPS 879
+ E +L+ + H A + +TS +R YA++ R FN K +HLGH AKSF LR+ P
Sbjct: 624 LDVERWLLEDQASHDEAVRAFTSHIRAYATHLSSEREFFNVKLLHLGHLAKSFGLRETPK 683
Query: 880 VIS-GIGKPKNKEELKNKKMAINKEKSFKQRGNFSKKQMLSEFD 922
+ +G N E K K ++K + + K SEF+
Sbjct: 684 KLGKSVGNNSNYSESKKGKKEDPRKKMLRM-AKMAVKSASSEFN 726
|
ATP-binding RNA helicase involved in the biogenesis of 60S ribosomal subunits and is required for the normal formation of 25S and 5.8S rRNAs. Candida albicans (strain SC5314 / ATCC MYA-2876) (taxid: 237561) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 1 EC: 3 |
| >sp|Q0CF43|DBP7_ASPTN ATP-dependent RNA helicase dbp7 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=dbp7 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 314 bits (804), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 209/633 (33%), Positives = 320/633 (50%), Gaps = 93/633 (14%)
Query: 361 ISSLFQNNPDIPNV-------PTRRLKPVSEALFAPTSYEEFPGIHPFMKKNLNEGMNIT 413
ISSLF NP N P KP + L G+ P + +L + +
Sbjct: 105 ISSLFSKNPLPRNAEEPTDEAPAEDAKPTNAPLIDGLDTFTNLGLSPTLAAHLLTKLELK 164
Query: 414 QVTTVQQLSIQPIL-DGGDVLVRSQTGSGKTLAYAIPIIQKL-----------------Q 455
T +Q+ SI +L + D ++++TGSGKTLAY +P++Q++
Sbjct: 165 APTAIQKASISQLLKEESDAFIQAETGSGKTLAYLLPLVQRIMALSHPTNRTDATSTTDA 224
Query: 456 EMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIR 515
E +P + R G++A+++ PTREL Q + L + WIV + GGEK KSEKAR+R
Sbjct: 225 EGQPVVHRDSGLFAIVLAPTRELCKQISVVLEGLLRCAHWIVAGTVIGGEKKKSEKARLR 284
Query: 516 KGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILK-KQK 574
KG++ILVATPGRL DH ++T+ L S V LVLDE DR+++ G+E+++ ++ L +Q+
Sbjct: 285 KGLNILVATPGRLADHLENTQALDVSNVRWLVLDEGDRLMELGFEQELQGIIKKLDARQR 344
Query: 575 P--------QFQSILLSATLTPAVQRLAGMTLQNPIQIDA------ADSTDIHNTTDSLV 620
P + +IL SATL VQ+L M+L++ I I A D+ ++ +
Sbjct: 345 PSRIPGVPTKRTTILCSATLKMNVQKLGEMSLKDAIHIKADPADEDGDAKPKNDDESAFT 404
Query: 621 IPDSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTV 680
+P LKQ + + KLRLV L +F+ K + + K +VF++ D D+H E+ +
Sbjct: 405 VPAQLKQSYAIVAAKLRLVTLTAFL--KRTFMRKGSVMKAIVFVSCADSVDFHFEVFTRK 462
Query: 681 LGEN------------------------------------IAFFKLHGSMSQSERTEVFK 704
L ++ + +LHGS+ Q RT
Sbjct: 463 LQDSDENAEDSDASDTKEKPAAFTHNTIARATAFSNPSNPVTLHRLHGSLPQHVRTSTLA 522
Query: 705 TF-RSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLF 763
+F R+ + VL+CTDVA+RGLDLP VD +++Y S+ D++HR+GRTAR+G +G +L+F
Sbjct: 523 SFARNKDASVLVCTDVASRGLDLPNVDLVIEYDPAFSAEDHLHRIGRTARLGRDGRALIF 582
Query: 764 LIPSEVKLVEELQNRRIRIEEIKLKDCLQNLLSVKMEGDLSRLADGNVET-------AAT 816
L P + E+ R R D + L + L R GNVE+ AT
Sbjct: 583 LQPGCEEGYVEILKRGYR-------DGGKALTRTNADDILKRGFGGNVESENKDWEEKAT 635
Query: 817 ALQMSFESAVLQQKILHTSACKGYTSWVRFYASYSKDLRHIFNFKQIHLGHFAKSFALRD 876
QM E L++ A + Y S +R YA++ R +FN K++HLGH AK+FALRD
Sbjct: 636 DWQMDLERWALEKPESLEMARRAYQSHIRAYATHVASERSMFNIKELHLGHLAKAFALRD 695
Query: 877 APSVISGIGKPKNKEELKNKKMAINKEKSFKQR 909
PS I+ G + K++ K A + K+R
Sbjct: 696 RPSKINVPGLRQGKDDTKKDYKAARAPAAGKKR 728
|
ATP-binding RNA helicase involved in the biogenesis of 60S ribosomal subunits and is required for the normal formation of 25S and 5.8S rRNAs. Aspergillus terreus (strain NIH 2624 / FGSC A1156) (taxid: 341663) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 1 EC: 3 |
| >sp|A1CB55|DBP7_ASPCL ATP-dependent RNA helicase dbp7 OS=Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 / NRRL 1) GN=dbp7 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 314 bits (804), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 212/611 (34%), Positives = 317/611 (51%), Gaps = 88/611 (14%)
Query: 361 ISSLFQNNPDIPNV-------PTRRLKPVSEALFAPTSYEEFPGIHPFMKKNLNEGMNIT 413
ISSLF NP+ NV P KP + L G+ P + +L + +
Sbjct: 99 ISSLFTKNPEPKNVEEVKEEGPVEEAKPTNAPLIDGLDTFTNLGLSPSLAAHLLTKLELK 158
Query: 414 QVTTVQQLSIQPIL-DGGDVLVRSQTGSGKTLAYAIPIIQKLQEM---------RPKISR 463
T +Q+ SI +L + GD ++++TGSGKTLAY +P++Q++ + +P + R
Sbjct: 159 APTAIQKASISQLLKEDGDAFIQAETGSGKTLAYLLPLVQRIMTLSKPTTDATGQPIVHR 218
Query: 464 KDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVA 523
G++A+++ PTREL Q + L + WIV + GGEK KSEKAR+RKG++ILVA
Sbjct: 219 DSGLFAIVLAPTRELCKQISVVLESLLRCAHWIVAGTVIGGEKKKSEKARLRKGLNILVA 278
Query: 524 TPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILK-KQKP------- 575
TPGRL DH ++T+ L S V LVLDE DR+++ G+E +I ++ L +Q+P
Sbjct: 279 TPGRLADHLENTKVLDVSNVRWLVLDEGDRLMELGFEEEIQGIVKKLDARQRPSRIPGIP 338
Query: 576 -QFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTD-------IHNTTDSLV-IPDSLK 626
+ ++L SAT+ VQ+L ++L++ + I AD D + DS +P LK
Sbjct: 339 TKRTTVLCSATMKMNVQKLGEISLKDAVHI-KADPEDEDEKARLANKEEDSAYRVPAQLK 397
Query: 627 QHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLS-------- 678
Q + V KLRLV L +++ K + + K +VF++ D D+H E+ +
Sbjct: 398 QSYAVVAAKLRLVTLTAYL--KRTFMRKGSVMKTIVFVSCADSVDFHFEVFTRKKQQTDD 455
Query: 679 -----------------TVLGENIAF---------FKLHGSMSQSERTEVFKTF-RSVKS 711
+ AF ++LHGS+ Q+ RT +F ++ +
Sbjct: 456 ADASDEEKTEEKPLSPHGTIAPATAFSNPSNPVTLYRLHGSLPQNVRTSTLASFAKNREP 515
Query: 712 GVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPS-EVK 770
VLICTDVA+RGLDLP VD +V+Y S+ D++HR+GRTARVG +G +L+FL+P E
Sbjct: 516 SVLICTDVASRGLDLPNVDLVVEYDPAFSAEDHLHRIGRTARVGRDGRALVFLMPGCEEN 575
Query: 771 LVEELQNRRIRIEEIKLKDCLQNLLSVKMEGDLSRLADGNVETA-------ATALQMSFE 823
VE L+ +D + L V L R GNVE AT Q E
Sbjct: 576 YVEILKR--------GYRDGGKALTRVDANDILKRGFGGNVEAGKKDWDVKATDWQCEVE 627
Query: 824 SAVLQQKILHTSACKGYTSWVRFYASYSKDLRHIFNFKQIHLGHFAKSFALRDAPSVISG 883
L+ A + + S +R YA++ R +FN K++HLGH AK+FALRD PS I+
Sbjct: 628 RWSLENPQYLEMARRAFQSHIRAYATHIAAERSMFNIKELHLGHLAKAFALRDRPSKINV 687
Query: 884 IGKPKNKEELK 894
G + KEE K
Sbjct: 688 PGLRQGKEETK 698
|
ATP-binding RNA helicase involved in the biogenesis of 60S ribosomal subunits and is required for the normal formation of 25S and 5.8S rRNAs. Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 / NRRL 1) (taxid: 344612) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 1 EC: 3 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 930 | ||||||
| 307210507 | 874 | Probable ATP-dependent RNA helicase DDX3 | 0.621 | 0.661 | 0.507 | 1e-174 | |
| 307179995 | 871 | Probable ATP-dependent RNA helicase DDX3 | 0.627 | 0.670 | 0.488 | 1e-170 | |
| 242014121 | 821 | DEAD box ATP-dependent RNA helicase, put | 0.578 | 0.655 | 0.506 | 1e-168 | |
| 193676312 | 642 | PREDICTED: probable ATP-dependent RNA he | 0.612 | 0.887 | 0.495 | 1e-158 | |
| 405952846 | 713 | Putative ATP-dependent RNA helicase DDX3 | 0.618 | 0.806 | 0.458 | 1e-147 | |
| 321460070 | 757 | hypothetical protein DAPPUDRAFT_309224 [ | 0.594 | 0.730 | 0.458 | 1e-143 | |
| 432876075 | 761 | PREDICTED: probable ATP-dependent RNA he | 0.598 | 0.731 | 0.446 | 1e-139 | |
| 291411436 | 708 | PREDICTED: DEAD (Asp-Glu-Ala-Asp) box po | 0.609 | 0.800 | 0.443 | 1e-138 | |
| 126297926 | 730 | PREDICTED: probable ATP-dependent RNA he | 0.595 | 0.758 | 0.443 | 1e-138 | |
| 395506322 | 715 | PREDICTED: probable ATP-dependent RNA he | 0.551 | 0.717 | 0.465 | 1e-137 |
| >gi|307210507|gb|EFN87010.1| Probable ATP-dependent RNA helicase DDX31 [Harpegnathos saltator] | Back alignment and taxonomy information |
|---|
Score = 617 bits (1591), Expect = e-174, Method: Compositional matrix adjust.
Identities = 320/631 (50%), Positives = 430/631 (68%), Gaps = 53/631 (8%)
Query: 342 NIDPDNYEIPKKTEVKSGPISSLFQNNPDIPNVPTRRLKPVSEALFAPTSYEEFPGIHPF 401
N D D + P+ + G ISSLF NNPDIP + R +KPV E +F ++E+ IH
Sbjct: 247 NDDRDLDKNPRLSHRPGGKISSLFGNNPDIPTIGQRFVKPVDEPIFTEITFEDL-NIHSH 305
Query: 402 MKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKI 461
M NL + MNIT++TTVQQ +I I D+LVRSQTGSGKTLAYAIPI++ L ++RPK+
Sbjct: 306 MISNLAQNMNITKMTTVQQKAIPQIFSAKDILVRSQTGSGKTLAYAIPIVELLHKIRPKL 365
Query: 462 SRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISIL 521
+R G+ A+I++PTREL LQT E F KL K FTWIVP +L GGEK K+EKAR+RKG ++L
Sbjct: 366 NRNSGLLALIVVPTRELTLQTYECFIKLVKPFTWIVPGYLIGGEKRKAEKARLRKGCNVL 425
Query: 522 VATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILK----KQKPQF 577
+ATPGRLLDH ++T+ LK +V++ VLDEADR+LD GYE+DI+ +I + K + +
Sbjct: 426 IATPGRLLDHMQNTKALKLHEVKYFVLDEADRMLDMGYEKDISGTRDIEQNREDKDQSRR 485
Query: 578 QSILLSATLTPAVQRLAGMTLQNPIQIDAADST------DIHNTTDSLVIPDSLKQHFIV 631
Q+ILLSATLT AV++LAG+ +++PI +DAA + D+ + LV+P S+ Q++IV
Sbjct: 486 QTILLSATLTQAVEKLAGLAMRSPIFVDAAKANLEMSAGDVSEINEDLVVPQSVSQNYIV 545
Query: 632 TPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGE-------- 683
TPPKLR+V L+++I GKCQ + K+L+FMATQDM DYHTE+LS++L +
Sbjct: 546 TPPKLRMVTLSAYIAGKCQTPG---QHKILIFMATQDMVDYHTEILSSILTKPINDDDED 602
Query: 684 -----NIAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAP 738
++ FFKL+G+M Q ERTEVFKTFR KSGVL+CTDVAARGLD+P VD +VQYT P
Sbjct: 603 SDPLVDVEFFKLYGNMPQKERTEVFKTFRQAKSGVLLCTDVAARGLDMPKVDCVVQYTGP 662
Query: 739 SSSTDYVHRVGRTARVGHEGSSLLFLIPSEVKLVEELQNRRIRIEEIKLKDCLQNLLSVK 798
+S+ DYVHR+GRTAR G G+ +FL PSE+ V L++RRIRI++ + D L LL
Sbjct: 663 TSARDYVHRIGRTARAGSSGTGTIFLTPSEIDFVRMLESRRIRIKQQDMNDVLDKLL--- 719
Query: 799 MEGDLSRLADGNVETAATALQMSFESAVLQQKILHTSACKGYTSWVRFYASYSKDLRHIF 858
G LS+ +V+ AATALQ FE+ +L+ + L+ ACK Y SWV FY+SY +D+R IF
Sbjct: 720 --GPLSK--HNSVQAAATALQNDFENLLLENRQLNAKACKAYASWVCFYSSYPRDMREIF 775
Query: 859 NFKQIHLGHFAKSFALRDAPSVISGIGK---------PKNKEELKNK-------KMAINK 902
N K +HLGH+AKSFALRD P I GI K PK+ L NK K+ +
Sbjct: 776 NRKALHLGHYAKSFALRDPPQRIGGISKRLREEESSRPKHNNRLSNKPSDGVSQKVPKGQ 835
Query: 903 EKSFKQRGNFSKKQML--SEFDSGL-PQRKP 930
+ ++ G + +ML SE+DSGL P +KP
Sbjct: 836 DGEGQRTGLLKRVRMLNISEYDSGLEPLKKP 866
|
Source: Harpegnathos saltator Species: Harpegnathos saltator Genus: Harpegnathos Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|307179995|gb|EFN68085.1| Probable ATP-dependent RNA helicase DDX31 [Camponotus floridanus] | Back alignment and taxonomy information |
|---|
Score = 605 bits (1561), Expect = e-170, Method: Compositional matrix adjust.
Identities = 317/649 (48%), Positives = 432/649 (66%), Gaps = 65/649 (10%)
Query: 331 TKKKIKKLKEYNIDP--DNYEIPKKTEVKSGPISSLFQNNPDIPNVPTRRLKPVSEALFA 388
K+ KK KE ++ ++ P+ G ISSLF NNPD+P + R +KPV E +F
Sbjct: 226 NKRNEKKHKEKTVNNHRESDNTPQLLRKGGGKISSLFGNNPDVPIIGQRLVKPVDEPIFT 285
Query: 389 PTSYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAI 448
++ + IHPFM NL + M+IT++TTVQQ +I I G DVL+RSQTGSGKTLAYA+
Sbjct: 286 KITFADL-NIHPFMISNLEQNMHITKMTTVQQKAIPEIFSGKDVLIRSQTGSGKTLAYAL 344
Query: 449 PIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMK 508
PI++ L ++RPK++R G+ A+I++PTRELALQT E F KL K FTWIVP ++ GGEK K
Sbjct: 345 PIVELLHKIRPKLNRNSGLSALIVVPTRELALQTYECFIKLVKPFTWIVPGYIIGGEKRK 404
Query: 509 SEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLE 568
+EKAR+RKG +IL+ TPGRLLDH KHT+ L+ ++V + +LDEADR+L+ GYE++I++ +
Sbjct: 405 AEKARLRKGCNILITTPGRLLDHIKHTKALRLNEVRYFILDEADRMLEMGYEKNISDMNQ 464
Query: 569 ILKKQKPQFQ---------------SILLSATLTPAVQRLAGMTLQNPIQIDAADST--- 610
+ Q +ILLSATLT AV++LAG+ + NPI +DAA
Sbjct: 465 EFDSKAENAQNIEQDCKDVTQSRRKTILLSATLTQAVEKLAGLAMYNPIFVDAAKENLET 524
Query: 611 ---DIHNTTDSLVIPDSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQ 667
D + L++P S+ Q +IVTPPKLR+V L+++I+ +CQ + K+L+FMATQ
Sbjct: 525 SGGDTSEINEDLIVPQSVIQSYIVTPPKLRMVTLSAYIVSRCQTPG---QHKILIFMATQ 581
Query: 668 DMADYHTELLSTVLGE--------------NIAFFKLHGSMSQSERTEVFKTFRSVKSGV 713
DM DYHTE+LS++L E N+ FFKLHG+M+Q ERTEVFKTF KSGV
Sbjct: 582 DMVDYHTEILSSILTESVDDNDDEDSDPLVNVEFFKLHGNMTQKERTEVFKTFSRAKSGV 641
Query: 714 LICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPSEVKLVE 773
L+CTDVAARGLD+P VD +VQYT P S+ DYVHR+GRTAR G G++ +FL PSEV+ V
Sbjct: 642 LLCTDVAARGLDMPKVDCVVQYTGPISTRDYVHRIGRTARAGCSGTATIFLTPSEVEFVR 701
Query: 774 ELQNRRIRIEEIKLKDCLQNLLSVKMEGDLSRLADGNVETAATALQMSFESAVLQQKILH 833
L++RRIRI++ + D L LL G LS+ +V+ AA ALQ +FE+ VL+ K L
Sbjct: 702 MLESRRIRIKQQNMNDILDKLL-----GPLSK--HNSVQAAAIALQNNFENLVLENKQLG 754
Query: 834 TSACKGYTSWVRFYASYSKDLRHIFNFKQIHLGHFAKSFALRDAPSVISGIGKP-KNKEE 892
A K YTSW+RFY+SY +D+R IFN K++HLGH+AKSFALRD+P I GIGK + KE
Sbjct: 755 AKAYKAYTSWMRFYSSYPRDMREIFNRKELHLGHYAKSFALRDSPHRIGGIGKKLREKEG 814
Query: 893 LK---NKKM-----AINKEKSFKQRGNFSKKQML--------SEFDSGL 925
LK N ++ + +++ KQ G+ + +L SE+DSGL
Sbjct: 815 LKPNHNNRLHKPSDGVPQKEQRKQNGDRQRTGLLKRARMLNTSEYDSGL 863
|
Source: Camponotus floridanus Species: Camponotus floridanus Genus: Camponotus Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|242014121|ref|XP_002427746.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus corporis] gi|212512187|gb|EEB15008.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus corporis] | Back alignment and taxonomy information |
|---|
Score = 598 bits (1543), Expect = e-168, Method: Compositional matrix adjust.
Identities = 309/610 (50%), Positives = 408/610 (66%), Gaps = 72/610 (11%)
Query: 346 DNYEIPKKTEVKSGPISSLFQNNPDIPNVPTRRLKPVSEALFAPTSYEEFPGIHPFMKKN 405
DNY K E K G ++SLF NNP+IPN+P R +KP+ E +F+ +E+ +H +M K
Sbjct: 213 DNYS--KVKEHKMGKVTSLFYNNPEIPNIPHRAVKPIKEDVFSNLKFEDL-NLHSYMVKY 269
Query: 406 LNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKD 465
L E M +TQVTTVQ+ SI +LDG D L+RSQTGSGKTLA+A+P++ KLQE+RPKI+R D
Sbjct: 270 LKESMGLTQVTTVQEKSIPVLLDGKDALIRSQTGSGKTLAFALPMLHKLQEIRPKITRSD 329
Query: 466 GIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATP 525
GI ++I+LPTRELALQT E+F KL KS+ W+VP +L GGEK KS+KAR+RKGI+IL+ TP
Sbjct: 330 GILSLIVLPTRELALQTYEVFNKLVKSYNWLVPGYLGGGEKRKSKKARLRKGITILIGTP 389
Query: 526 GRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQ-------KPQF- 577
GRL+DH +HT+ L KV LV+DEADR+LD GYE+D++ LE L + KP +
Sbjct: 390 GRLIDHIQHTKALNLEKVSWLVIDEADRLLDMGYEKDVSTLLETLDRHDEDSSLLKPDYL 449
Query: 578 --------------------QSILLSATLTPAVQRLAGMTLQNPIQIDAAD--------- 608
Q+ILLSATL+P VQ+LAG++L++P +DA+D
Sbjct: 450 KTDEEKEEKEKEKEPKRHHRQTILLSATLSPKVQKLAGLSLRDPTFVDASDKNSSCSDHV 509
Query: 609 ---STDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMA 665
S+D+ TD++V+P+SL Q +IVTPPKL+LV+L SFI+ N ++ KML+F+
Sbjct: 510 PLVSSDMGAETDAMVLPESLIQKYIVTPPKLKLVSLTSFII---WNSKVSQQKKMLIFVG 566
Query: 666 TQDMADYHTELLSTVLG------------------------ENIAFFKLHGSMSQSERTE 701
TQDM DY+TELLSTV G +I FKLHG+M QS+R E
Sbjct: 567 TQDMVDYYTELLSTVFGGVTSKNDDDGNDTKSNEGLLNFPTSDIELFKLHGNMKQSDRME 626
Query: 702 VFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSL 761
VFKTFR GVL+CTDVAARGLDLP VDW+VQ+T P S +DYVHRVGRTAR G GSS+
Sbjct: 627 VFKTFRKSNMGVLLCTDVAARGLDLPEVDWVVQFTGPISVSDYVHRVGRTARSGQSGSSI 686
Query: 762 LFLIPSEVKLVEELQNRRIRIEEIKLKDCLQNL--LSVKMEGDLSRLADGNVETAATALQ 819
+FL P+E+ + +L+N +IR+ E K++ CLQ+L ++ + G R G VE AT LQ
Sbjct: 687 IFLTPNEINFIRKLENCQIRVREEKMETCLQHLAEINTEGGGGGGRRRRGVVEEEATKLQ 746
Query: 820 MSFESAVLQQKILHTSACKGYTSWVRFYASYSKDLRHIFNFKQIHLGHFAKSFALRDAPS 879
FE VL K L+ ACK Y+SW RFYASY ++++ F+ K +H GH+AKSFALRD PS
Sbjct: 747 SIFEKLVLDNKKLYDLACKAYSSWSRFYASYPRNMKDAFSVKTVHQGHYAKSFALRDTPS 806
Query: 880 VISGIGKPKN 889
VI + KN
Sbjct: 807 VIVNYAREKN 816
|
Source: Pediculus humanus corporis Species: Pediculus humanus Genus: Pediculus Family: Pediculidae Order: Phthiraptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|193676312|ref|XP_001947247.1| PREDICTED: probable ATP-dependent RNA helicase DDX31-like [Acyrthosiphon pisum] | Back alignment and taxonomy information |
|---|
Score = 565 bits (1455), Expect = e-158, Method: Compositional matrix adjust.
Identities = 297/599 (49%), Positives = 410/599 (68%), Gaps = 29/599 (4%)
Query: 347 NYEIPKKTEVKSGPISSLFQNNPDI--------PNVPTRRLKPVSEALFAPTSYEEFPGI 398
NY+ + K+G ++S+F+NNP++ V + +LF+ ++Y++ +
Sbjct: 53 NYQKKNNNDRKNGYMTSMFRNNPEVQLPVAILNKQVDIQASNKNRNSLFSTSTYKDLTDL 112
Query: 399 HPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMR 458
H M NL + + +T++TTVQ +I + G D +V+S+TGSGKT AYA+P+I+ L ++R
Sbjct: 113 HAHMVANLEQTLGVTKLTTVQSQTIPVLQSGKDAMVQSETGSGKTFAYAVPLIESLHKIR 172
Query: 459 PKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGI 518
PK+SR DG+ A+IILPTRELALQT E F KL K +TW+VP TGGEK KSEKAR+RKGI
Sbjct: 173 PKLSRTDGLRALIILPTRELALQTYENFIKLLKPYTWLVPGMFTGGEKRKSEKARMRKGI 232
Query: 519 SILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQF- 577
+IL+ TPGRLLDH ++T+++ F ++ L++DEADR+LD GYE+DI L ++ + + +
Sbjct: 233 TILIGTPGRLLDHAQNTKSISFKSLQWLIIDEADRMLDLGYEKDITSILSVVDEHRDESV 292
Query: 578 --QSILLSATLTPAVQRLAGMTLQNPIQIDAAD--STDIHNTTDSLVIPDSLKQHFIVTP 633
Q+ LLSATL+ VQRLAG++L++P+ IDA+ STD ++ + IPDSL Q++++ P
Sbjct: 293 PRQTALLSATLSEGVQRLAGLSLKDPVYIDASSIGSTD----SECMAIPDSLLQYYVLAP 348
Query: 634 PKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGS 693
PKLRLV L+ +L K Q SK LVFMATQDM D++TELL+TVL + FKLHG+
Sbjct: 349 PKLRLVTLSGVLLQKLQ--KGQISSKTLVFMATQDMVDFYTELLTTVL-TCLTMFKLHGN 405
Query: 694 MSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTAR 753
M+Q ER EVFK+F++ GVL CTDVA+RGLDLPLVD I+QY AP + TDYVHRVGRTAR
Sbjct: 406 MTQVERMEVFKSFKAANHGVLFCTDVASRGLDLPLVDRIIQYNAPITPTDYVHRVGRTAR 465
Query: 754 VGHEGSSLLFLIPSEVKLVEELQNRRIRIEEIKLKDCLQNLLSVKMEGDLSRLADGNVET 813
VG +G + LFL P E + +LQ+ I E+K+ CL ++L+++ EG+ + A E
Sbjct: 466 VGQKGEATLFLTPHEAMFIAKLQDHSIVASELKMDKCLTSILTMEFEGEHVKTA----EM 521
Query: 814 AATALQMSFESAVLQQKILHTSACKGYTSWVRFYASYSKDLRHIFNFKQIHLGHFAKSFA 873
AA LQ FE+AVL+Q LH C + SWVR YASY K R +FNFK HLGH+AKSFA
Sbjct: 522 AANVLQSRFETAVLEQDRLHELGCNAFKSWVRSYASYPKSSREVFNFKDCHLGHYAKSFA 581
Query: 874 LRDAPSVISGIGKPKNKEELKNKKMAINKEKS---FKQRGNFSKKQMLSEFDSGLPQRK 929
+RDAP +I GIGKPK +KN++ I K S FK+R + K SEFDSG+ +K
Sbjct: 582 IRDAPRIIGGIGKPKKDPRMKNQR-KIPKADSGALFKKRKS-DKAISASEFDSGMKAKK 638
|
Source: Acyrthosiphon pisum Species: Acyrthosiphon pisum Genus: Acyrthosiphon Family: Aphididae Order: Hemiptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|405952846|gb|EKC20608.1| Putative ATP-dependent RNA helicase DDX31 [Crassostrea gigas] | Back alignment and taxonomy information |
|---|
Score = 529 bits (1363), Expect = e-147, Method: Compositional matrix adjust.
Identities = 280/611 (45%), Positives = 398/611 (65%), Gaps = 36/611 (5%)
Query: 346 DNYEIPKKTEVKSGP--ISSLFQNNPDIPNVPTRRLKPVSEALFAPTSYEEFPGIHPFMK 403
D+ E+P K E ISSLF+ NP+IP+V + +E +F+ +++ +HPFM
Sbjct: 98 DSTEVPHKKERHENKVFISSLFRFNPEIPSVERSVVSKKTEEMFSSKDFKDL-DLHPFMI 156
Query: 404 KNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISR 463
NL E ITQ+TTVQQ +I ++ G DV+V+SQTGSGKTL +A+P++Q LQ + PKISR
Sbjct: 157 TNLEERFQITQMTTVQQRAIPHLMSGRDVMVKSQTGSGKTLTFAVPVVQHLQSLTPKISR 216
Query: 464 KDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVA 523
DG+ A++I+PTREL +Q E F +L F W+VP L GGEK KSEKAR+RKG++ILV
Sbjct: 217 MDGVLALVIVPTRELVIQCFETFKRLVNPFQWVVPGCLMGGEKRKSEKARLRKGMNILVC 276
Query: 524 TPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLS 583
TPGRLLDH ++T +L SKV+ LVLDEADR+LD GYE+D+ E + L + + Q++LLS
Sbjct: 277 TPGRLLDHIRNTNSLSLSKVKWLVLDEADRLLDLGYEKDVGEIISALDTESHR-QTVLLS 335
Query: 584 ATLTPAVQRLAGMTLQNPIQIDAADSTDIH----------NTTDSLVIPDSLKQHFIVTP 633
ATL+ V+RLAGM+L +P++ID +++ + + ++ V+P+ L+Q F++TP
Sbjct: 336 ATLSEGVERLAGMSLTDPLRIDVSNAEEENSQSNSESSKTQKNENFVVPEKLRQSFVITP 395
Query: 634 PKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLG----------- 682
KLRLV L +FIL K + + KM+VF++TQD ++H +L+ + G
Sbjct: 396 CKLRLVTLTAFILLKMKMMT--SPGKMVVFLSTQDSVEFHYKLMKHLFGGEEAEDNPNLA 453
Query: 683 --ENIAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSS 740
++ FFKLHG M Q ERT+V++ F S K+GVL CT+VA+RGLDLP V WIVQYT P +
Sbjct: 454 EEGDVDFFKLHGEMPQKERTKVYQEFSSAKTGVLFCTNVASRGLDLPDVRWIVQYTTPGA 513
Query: 741 STDYVHRVGRTARVGHEGSSLLFLIPSEVKLVEELQNRRIRIEEIKLKDCLQNLL----S 796
DYVHRVGRTARVG +G +LLF++P+EV+ ++ L I +EEI + D L+ L+
Sbjct: 514 VQDYVHRVGRTARVGKQGHALLFIMPAEVEYLKSLSGHGISMEEINMADILKTLIIAVQD 573
Query: 797 VKMEGDLSRLADGNVETAATALQMSFESAVLQQKILHTSACKGYTSWVRFYASYSKDLRH 856
+ + D R+ E AT +Q FE+ V++ K + A K + S+VR YA+Y DL+
Sbjct: 574 MVSDSDRKRMPPKTYEECATYIQNCFENFVVEDKEMSEMAKKAFQSFVRAYATYPSDLKT 633
Query: 857 IFNFKQIHLGHFAKSFALRDAPSVISGI-GKPKNKEELKNKKM-AINKEKSFKQRGNFSK 914
IF+ + +HLGH AKSF LR+APS I+ GKPK + K + EKS + +FS
Sbjct: 634 IFHVRNLHLGHLAKSFGLREAPSNINDKRGKPKTFSKKKQSRQDRFGSEKSGFKTPSFS- 692
Query: 915 KQMLSEFDSGL 925
Q +SEF SGL
Sbjct: 693 SQAISEFSSGL 703
|
Source: Crassostrea gigas Species: Crassostrea gigas Genus: Crassostrea Family: Ostreidae Order: Ostreoida Class: Bivalvia Phylum: Mollusca Superkingdom: Eukaryota |
| >gi|321460070|gb|EFX71116.1| hypothetical protein DAPPUDRAFT_309224 [Daphnia pulex] | Back alignment and taxonomy information |
|---|
Score = 514 bits (1325), Expect = e-143, Method: Compositional matrix adjust.
Identities = 273/595 (45%), Positives = 377/595 (63%), Gaps = 42/595 (7%)
Query: 358 SGPISSLFQNNPDIPNVPTRRLKPVSEALFAPTSYEEFPGIHPFMKKNLNEGMNITQVTT 417
+G ISSLF NP+IP V ++ E +F+ S+ IH ++ L + +N+ Q+T
Sbjct: 154 TGIISSLFFKNPEIPEVTKDHVEATEENVFSSQSFSAL-KIHKYLITTLEKDLNLKQMTE 212
Query: 418 VQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRE 477
Q +I +LD D LV+SQTGSGKTLAYAIPI++ + PKI R G++A++I+PTRE
Sbjct: 213 AQSRTIPILLDKKDALVKSQTGSGKTLAYAIPIVESIT---PKIDRTSGVFALVIVPTRE 269
Query: 478 LALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTET 537
L LQT FTK+ K+FTW+VP +L GGEK KSEKARIRKG++IL++TPGRLLDH T
Sbjct: 270 LVLQTYTWFTKILKAFTWVVPGYLIGGEKKKSEKARIRKGMNILISTPGRLLDHLSSTRN 329
Query: 538 LKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQ------KPQFQSILLSATLTPAVQ 591
L ++ LV+DEADR+LD GYE+D+A L I+++ + Q++++SATL+ V+
Sbjct: 330 LNLGRLHWLVMDEADRLLDMGYEKDVARILSIVQEHFVKEGCIGRRQNVMVSATLSKGVE 389
Query: 592 RLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALASFILGKCQN 651
+LAG+TL +P I ++ D D LV P +LKQ +I+ PPKLRL LA+FIL KC
Sbjct: 390 KLAGLTLTDPEYIKLSE--DDSENQDQLVTPTNLKQWYIIVPPKLRLATLAAFILWKC-- 445
Query: 652 VNEDEESKMLVFMATQDMADYHTELLSTVLGE-----NIAFFKLHGSMSQSERTEVFKTF 706
E K+L+FM TQD DYH EL + VL + +I+F+KLHGSM Q +RT +FK F
Sbjct: 446 -TISTEKKVLIFMTTQDSVDYHAELFNRVLAKREDRTSISFYKLHGSMPQKDRTAIFKEF 504
Query: 707 RSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIP 766
R SGVL+CTDVAARGLDL +DWIVQY P ++ +YVHRVGRTARVG G +++FL P
Sbjct: 505 RDTDSGVLLCTDVAARGLDLSAIDWIVQYNPPVTAEEYVHRVGRTARVGKCGQAIIFLAP 564
Query: 767 SEVKLVEELQNRRIRIEEIKLKDCLQNLLSVKMEGDLSRLADGNVETAATALQMSFESAV 826
E V L NR I + E L+ L + S+ +E AAT++Q+ FE V
Sbjct: 565 PETDFVHRLANRGISVVEKNPDAILKTLTN-----SWSKTTQ-TMEQAATSIQLCFEECV 618
Query: 827 LQQKILHTSACKGYTSWVRFYASYSKDLRHIFNFKQIHLGHFAKSFALRDAPSVISGIGK 886
++ ++ A KGY S+VR YA+ KD+R +FNF+ +HLGH+AKSFALRD P+ I+ G+
Sbjct: 619 IESYNVYEMATKGYVSFVRSYAALPKDVRDVFNFQSLHLGHYAKSFALRDPPAQINTNGR 678
Query: 887 ---------PKNKEELKNKKM-------AINKEKSFKQRGNFSKKQMLSEFDSGL 925
P N +N + A+ E + Q + ++ MLSE+ SGL
Sbjct: 679 MGQRNDRIQPFNTARQRNPALLKRAAAQALGSEGTQHQPNFYERQAMLSEYSSGL 733
|
Source: Daphnia pulex Species: Daphnia pulex Genus: Daphnia Family: Daphniidae Order: Diplostraca Class: Branchiopoda Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|432876075|ref|XP_004072964.1| PREDICTED: probable ATP-dependent RNA helicase DDX31-like [Oryzias latipes] | Back alignment and taxonomy information |
|---|
Score = 501 bits (1290), Expect = e-139, Method: Compositional matrix adjust.
Identities = 271/607 (44%), Positives = 385/607 (63%), Gaps = 50/607 (8%)
Query: 362 SSLFQNNPDIPNVPTRRLKPVSEALFAPTSYEEFPGIHPFMKKNLNEGMNITQVTTVQQL 421
SSLF++NPDIP++ + + E +F S+ E +HP + LN+ +N++ +T+VQ+
Sbjct: 137 SSLFKHNPDIPDIHRAAVCQLKEKIFTSDSFSEL-DLHPHLVATLNKVLNVSTLTSVQKQ 195
Query: 422 SIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQ 481
+I + G D LVRSQTGSGKTL+YA+P++Q LQ ++PK+SR DG A++I+PTRELA+Q
Sbjct: 196 TIPVLQSGRDALVRSQTGSGKTLSYAVPLVQSLQSIQPKVSRSDGPLALVIVPTRELAVQ 255
Query: 482 TLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFS 541
T +IF KL K FTWIVP L GGEK K+EKARIRKGI+ILV+TPGRL+DH KHT ++ FS
Sbjct: 256 TFQIFQKLLKPFTWIVPGVLMGGEKRKAEKARIRKGINILVSTPGRLVDHIKHTLSIAFS 315
Query: 542 KVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNP 601
V LVLDEADR LD G+++D+ L L P Q++LLSATLT V RLA + L++P
Sbjct: 316 AVRWLVLDEADRTLDLGFDKDLTVILNSLNSTGPARQNVLLSATLTLGVSRLADVCLKDP 375
Query: 602 IQIDAA---------------DSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALASFIL 646
+ I + T+ NT++S +P++L+Q +V P K+RLV LA+F+L
Sbjct: 376 VSIQVSGPSSSSDHTGSSHVTSDTEAANTSESFAVPEALRQFAVVVPSKIRLVCLAAFVL 435
Query: 647 GKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGE-----NIAFFKLHGSMSQSERTE 701
KC++ +K++VF+++ + ++ L ++VL ++F +LHG+M Q ER+E
Sbjct: 436 DKCKD------NKVIVFVSSCEAVEFLHSLFTSVLTRPAAYPRLSFQRLHGNMKQEERSE 489
Query: 702 VFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSL 761
VF+ F + +SGVL+CTDVAARGLDLPLV WIVQYT PSS+ +YVHRVGRTAR+G GSSL
Sbjct: 490 VFQLFSASQSGVLLCTDVAARGLDLPLVTWIVQYTPPSSAAEYVHRVGRTARIGGRGSSL 549
Query: 762 LFLIPSEVKLVEELQNRRIRIEEIKLKDCLQNLL---SVKMEGDL-----SRLADGNVET 813
LFL P+E + EL N I + E+KL++ L L+ + + G S+ + V
Sbjct: 550 LFLTPAETAFISELANHNISLSEMKLQEILSCLMLDDTYRGRGKYYSKTSSKALEQEVRE 609
Query: 814 AATALQMSFESAVLQQKILHTSACKGYTSWVRFYASYSKDLRHIFNFKQIHLGHFAKSFA 873
AT LQ FE+ V +A K S++R Y +Y L+HIF+ + +HLGH AKSF
Sbjct: 610 RATVLQTEFENFVHSDAQSLQAAKKALQSYLRAYTTYPAHLKHIFHIRFLHLGHAAKSFG 669
Query: 874 LRDAPSVI-SGIGKPKNKEELKNKKMA-----------INKEKSFKQR---GNFSKKQML 918
LRDAP + S +G + KNK +A + K+ + K+R G +
Sbjct: 670 LRDAPGGLSSALGSKGPGTKGKNKNVARKQGKSPVPNRVQKQITGKKRFFSGQREAGMLR 729
Query: 919 SEFDSGL 925
SEF +GL
Sbjct: 730 SEFSNGL 736
|
Source: Oryzias latipes Species: Oryzias latipes Genus: Oryzias Family: Adrianichthyidae Order: Beloniformes Class: Actinopterygii Phylum: Chordata Superkingdom: Eukaryota |
| >gi|291411436|ref|XP_002721995.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 31 [Oryctolagus cuniculus] | Back alignment and taxonomy information |
|---|
Score = 501 bits (1289), Expect = e-138, Method: Compositional matrix adjust.
Identities = 277/624 (44%), Positives = 380/624 (60%), Gaps = 57/624 (9%)
Query: 351 PKKTEVKSG----------PISSLFQNNPDIPNVPTRRLKPVSEALFAPTSYEEFPGIHP 400
P+K V +G SSLF+NNP+IP +P R++ E +F P +++E G+HP
Sbjct: 63 PRKCSVSAGDGSREEKPCIKTSSLFKNNPEIPELPRPRVEQACETVFTPDAFQEL-GLHP 121
Query: 401 FMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPK 460
+ +N ++ +T+VQ+ SI +L+G D LVRSQTGSGKTLAY IP++Q LQ M K
Sbjct: 122 HLISTINTVFKMSSMTSVQKRSIPVLLEGRDALVRSQTGSGKTLAYCIPVVQSLQAMPSK 181
Query: 461 ISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISI 520
I R DG YA++I+PTRELALQ+ + KL K FTWIVP L GGEK KSEKAR+RKGI+I
Sbjct: 182 IQRSDGPYALVIVPTRELALQSFDTVQKLLKPFTWIVPGVLMGGEKRKSEKARLRKGINI 241
Query: 521 LVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSI 580
L++TPGRL+DH + T+ + FS++ LVLDEADRILD G+E+DI L + + + Q++
Sbjct: 242 LISTPGRLVDHIRSTKNIHFSRICWLVLDEADRILDLGFEKDITVILNAVNAECRKRQNV 301
Query: 581 LLSATLTPAVQRLAGMTLQNPIQIDAAD-STDIHN----------------TTDSLVIPD 623
LLSATLT V RLA ++L NP+ + D S D N D IP+
Sbjct: 302 LLSATLTEGVTRLADISLHNPVSVSVLDESRDQCNPEGKAVQEVSPPQPGSRPDGFAIPE 361
Query: 624 SLKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGE 683
SL QH + P KLRLV LA+FIL KC+ +++ KM+VF ++ ++ ++H L L
Sbjct: 362 SLDQHVTLVPSKLRLVCLAAFILQKCKF---EKDQKMIVFFSSCELVEFHYHLFLQTLAS 418
Query: 684 N---------------IAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPL 728
+ F +LHG+M Q ERT VF+ F ++GVL+CTDVAARGLDLP
Sbjct: 419 GSGARASGPSPSACTRLRFLRLHGNMEQEERTAVFQEFARSRTGVLLCTDVAARGLDLPQ 478
Query: 729 VDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPSEVKLVEELQNRRIRIEEIKLK 788
V WIVQY APSS +Y+HRVGRTAR+G GSSLL L PSE + V L + +I + E+K++
Sbjct: 479 VTWIVQYNAPSSPAEYIHRVGRTARIGCHGSSLLILAPSEAEYVNSLASHKINVCEVKME 538
Query: 789 DCLQ-----NLLSVKMEGDLSRLADGNVET--AATALQMSFESAVLQQKILHTSACKGYT 841
D L + + G+ A G ET AT LQ FE V + + A K
Sbjct: 539 DILSVLTRDDCFQGRGRGNQKPHAGGPQETRARATVLQTVFEDYVHSSERTLSWAKKALQ 598
Query: 842 SWVRFYASYSKDLRHIFNFKQIHLGHFAKSFALRDAPSVISGIGKPKNKEELKNKKMAIN 901
S++R YA+Y ++L+HIF+ + +HLGH AKSF LRDAP +S K + + K+ A+
Sbjct: 599 SFIRAYATYPRELKHIFHVRSLHLGHVAKSFGLRDAPQNLSVSAGKKRRAGM--KRPALG 656
Query: 902 KEKSFKQRGNFSKKQMLSEFDSGL 925
KE K+R + + SE+ SGL
Sbjct: 657 KETQSKRR--RLAEILRSEYSSGL 678
|
Source: Oryctolagus cuniculus Species: Oryctolagus cuniculus Genus: Oryctolagus Family: Leporidae Order: Lagomorpha Class: Mammalia Phylum: Chordata Superkingdom: Eukaryota |
| >gi|126297926|ref|XP_001370951.1| PREDICTED: probable ATP-dependent RNA helicase DDX31 [Monodelphis domestica] | Back alignment and taxonomy information |
|---|
Score = 498 bits (1282), Expect = e-138, Method: Compositional matrix adjust.
Identities = 268/604 (44%), Positives = 379/604 (62%), Gaps = 50/604 (8%)
Query: 362 SSLFQNNPDIPNVPTRRLKPVSEALFAPTSYEEFPGIHPFMKKNLNEGMNITQVTTVQQL 421
SSLF+NNP+IP + +K V E +F S+ E G+HP + +N + + +T+VQ+
Sbjct: 114 SSLFKNNPEIPEIHRATVKQVREKVFTSDSFHEL-GLHPHLISTINSVLKMASMTSVQKQ 172
Query: 422 SIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQ 481
SI +L+G D LVRSQTGSGKTLAY IP++Q LQ M+ +I R DG YA++++PTRELALQ
Sbjct: 173 SIPSLLEGRDALVRSQTGSGKTLAYCIPVVQSLQAMKSRIQRSDGPYALVLVPTRELALQ 232
Query: 482 TLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFS 541
+ + KL K FTWIVP L GGEK KSEKAR+RKGI+IL++TPGRL+DH K T+ + F
Sbjct: 233 SFDTIQKLLKPFTWIVPGVLMGGEKRKSEKARLRKGINILISTPGRLVDHIKSTKNIHFR 292
Query: 542 KVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNP 601
+++ L++DEADRILD G+E+DI L + + + Q++LLSATLT V RLA ++L NP
Sbjct: 293 RIQWLIIDEADRILDLGFEKDITVILNAINAECEKRQNVLLSATLTEGVTRLADISLHNP 352
Query: 602 IQIDAADSTDIHNTT-----------------DSLVIPDSLKQHFIVTPPKLRLVALASF 644
+ I +D T T D +P+ L+QH + P KL+LV LA+F
Sbjct: 353 VSISVSDETCDQRTKGYKIAGESGPLRTSAEPDGFAVPEKLQQHVTLVPSKLKLVTLAAF 412
Query: 645 ILGKCQNVNEDEESKMLVFMATQDMADYHTEL-LSTVLGENIA--------------FFK 689
ILG+C+ +++ K++VF ++ ++ +++ L L T+LG + A F +
Sbjct: 413 ILGRCEF---EKDHKLIVFFSSCELVEFYYHLFLQTLLGSSTAPASGQSPSASSRLKFLR 469
Query: 690 LHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVG 749
LHG+M Q ERT VF+ F KSG+L+CTDVAARGLDLP V WIVQY APSS +Y+HR+G
Sbjct: 470 LHGNMEQEERTAVFQEFSLSKSGILLCTDVAARGLDLPQVTWIVQYNAPSSPAEYIHRIG 529
Query: 750 RTARVGHEGSSLLFLIPSEVKLVEELQNRRIRIEEIKLKDCLQNL-----LSVKMEGDLS 804
RTAR+G GSSLL L PSE + V L + +I + EIK++D L L + G+
Sbjct: 530 RTARIGCHGSSLLILAPSEAEYVNSLASHKINVSEIKMEDILSILATDDRFKARRWGNKK 589
Query: 805 RLADG--NVETAATALQMSFESAVLQQKILHTSACKGYTSWVRFYASYSKDLRHIFNFKQ 862
+ G + AT LQ +FE V + A K S++R YA+Y KDL+HIF+ +
Sbjct: 590 SRSVGPQEIRERATVLQTAFEDYVHASAERVSWAKKALQSFIRAYATYPKDLKHIFHVRS 649
Query: 863 IHLGHFAKSFALRDAPSVISG-IGKPKNKEELKNKKMAINKEKSFKQRGNFSKKQMLSEF 921
+HLGH AKSF LRDAP ++ +G NK + K K+ ++K+ K R + + SE+
Sbjct: 650 LHLGHVAKSFGLRDAPQNLNASLG---NKRKSKPKRPDLHKKTQSKHR---LAEILRSEY 703
Query: 922 DSGL 925
SG+
Sbjct: 704 SSGM 707
|
Source: Monodelphis domestica Species: Monodelphis domestica Genus: Monodelphis Family: Didelphidae Order: Didelphimorphia Class: Mammalia Phylum: Chordata Superkingdom: Eukaryota |
| >gi|395506322|ref|XP_003757483.1| PREDICTED: probable ATP-dependent RNA helicase DDX31 [Sarcophilus harrisii] | Back alignment and taxonomy information |
|---|
Score = 495 bits (1275), Expect = e-137, Method: Compositional matrix adjust.
Identities = 259/556 (46%), Positives = 358/556 (64%), Gaps = 43/556 (7%)
Query: 362 SSLFQNNPDIPNVPTRRLKPVSEALFAPTSYEEFPGIHPFMKKNLNEGMNITQVTTVQQL 421
SSLF+NNP+IP + +K V E +F S+ E G+HP + +N + ++ +T+VQ+
Sbjct: 99 SSLFKNNPEIPEIHRAMVKQVQEKVFTSDSFHEL-GLHPHLISTINTVLKMSSMTSVQKQ 157
Query: 422 SIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQ 481
SI +L+G D LVRSQTGSGKTLAY IP++Q LQ M+ ++ R DG YA++++PTRELALQ
Sbjct: 158 SIPSLLEGRDALVRSQTGSGKTLAYCIPVVQSLQAMKLRVQRSDGPYALVLVPTRELALQ 217
Query: 482 TLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFS 541
+ + KL K FTWIVP L GGEK KSEKAR+RKGI+IL++TPGRL+DH K T+ + FS
Sbjct: 218 SFDTVQKLLKPFTWIVPGVLMGGEKRKSEKARLRKGINILISTPGRLVDHIKSTKNIHFS 277
Query: 542 KVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNP 601
+++ L++DEADRILD G+E+DI L + + + Q++LLSATLT V RLA ++L NP
Sbjct: 278 RIQWLIIDEADRILDLGFEKDITVILNAINSECEKRQNVLLSATLTEGVARLADISLHNP 337
Query: 602 IQIDAADST-------------DIHNTT----DSLVIPDSLKQHFIVTPPKLRLVALASF 644
+ I +D T D H T DS +P+ L+QH + P KL+LV LA+F
Sbjct: 338 VSISVSDETCDQHIKGCKAARGDGHLQTSAEPDSFAVPEKLQQHVTLVPSKLKLVTLAAF 397
Query: 645 ILGKCQNVNEDEESKMLVFMATQDMADYHTEL-LSTVLGENIA--------------FFK 689
ILGKC+ + K++VF ++ ++ +++ L L T+L ++A F +
Sbjct: 398 ILGKCEF---ETNQKLIVFFSSCELVEFYYHLFLQTLLSSSVAPASGQSPSASSRLKFLR 454
Query: 690 LHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVG 749
LHG+M Q ERT VF+ F KSG+L+CTDVAARGLDLP V WIVQY APSS +Y+HR+G
Sbjct: 455 LHGNMEQEERTAVFQEFSQSKSGILLCTDVAARGLDLPQVTWIVQYNAPSSPAEYIHRIG 514
Query: 750 RTARVGHEGSSLLFLIPSEVKLVEELQNRRIRIEEIKLKDCLQNL-----LSVKMEGDLS 804
RTAR+G GSSLL L PSE + V L + +I + EIK++D L L + G+
Sbjct: 515 RTARIGCHGSSLLILAPSEAEYVNSLASHKINVSEIKMEDILSILAMDDRFKGRRWGNKK 574
Query: 805 RLADG--NVETAATALQMSFESAVLQQKILHTSACKGYTSWVRFYASYSKDLRHIFNFKQ 862
+ G + AT LQ +FE V + A K S++R YA+Y KDL+HIF+ +
Sbjct: 575 SRSVGPQEIRERATVLQTAFEDYVHASAEKVSWAKKALQSFIRAYATYPKDLKHIFHVRS 634
Query: 863 IHLGHFAKSFALRDAP 878
+HLGH AKSF LRDAP
Sbjct: 635 LHLGHVAKSFGLRDAP 650
|
Source: Sarcophilus harrisii Species: Sarcophilus harrisii Genus: Sarcophilus Family: Dasyuridae Order: Dasyuromorphia Class: Mammalia Phylum: Chordata Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 930 | ||||||
| FB|FBgn0027602 | 975 | CG8611 [Drosophila melanogaste | 0.248 | 0.236 | 0.537 | 4.6e-124 | |
| UNIPROTKB|F1S0U0 | 784 | DDX31 "Uncharacterized protein | 0.351 | 0.417 | 0.431 | 2.5e-65 | |
| ZFIN|ZDB-GENE-030131-3973 | 739 | ddx31 "DEAD (Asp-Glu-Ala-Asp) | 0.341 | 0.430 | 0.442 | 5.2e-77 | |
| UNIPROTKB|F8WAJ0 | 722 | DDX31 "Probable ATP-dependent | 0.346 | 0.445 | 0.452 | 4.4e-68 | |
| UNIPROTKB|F1NM06 | 690 | DDX31 "Uncharacterized protein | 0.345 | 0.465 | 0.430 | 5.1e-67 | |
| UNIPROTKB|F1N5H8 | 736 | DDX31 "Uncharacterized protein | 0.361 | 0.456 | 0.424 | 1.2e-65 | |
| UNIPROTKB|Q9H8H2 | 851 | DDX31 "Probable ATP-dependent | 0.346 | 0.378 | 0.452 | 3.3e-71 | |
| RGD|1304895 | 682 | Ddx31 "DEAD (Asp-Glu-Ala-Asp) | 0.339 | 0.463 | 0.483 | 1.9e-76 | |
| DICTYBASE|DDB_G0271708 | 908 | ddx31 "DEAD/DEAH box helicase" | 0.268 | 0.275 | 0.449 | 1.4e-89 | |
| TAIR|locus:2064844 | 609 | AT2G40700 [Arabidopsis thalian | 0.262 | 0.400 | 0.413 | 4.8e-88 |
| FB|FBgn0027602 CG8611 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 665 (239.2 bits), Expect = 4.6e-124, Sum P(4) = 4.6e-124
Identities = 129/240 (53%), Positives = 177/240 (73%)
Query: 377 RRLKPVSEALFAPTSYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRS 436
R +KPV E +F + G+HP KNL + ++I ++T+VQQ +I +L G DVLVRS
Sbjct: 314 RAVKPVKETIFTGSKISTL-GLHPHAVKNLEDLLSIRELTSVQQKTIPEVLQGKDVLVRS 372
Query: 437 QTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWI 496
QTGSGKTLAYA+P+++ LQ+ +P+I RKDG+ A++I+PTREL +QT E+ KL K +TWI
Sbjct: 373 QTGSGKTLAYALPLVELLQKQQPRIQRKDGVLALVIVPTRELVMQTYELIQKLVKPYTWI 432
Query: 497 VPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILD 556
VP L GGE KSEKAR+RKGI+IL+ TPGRL+DH HT + K +K++ L+LDEADR+L+
Sbjct: 433 VPGSLLGGESRKSEKARLRKGINILIGTPGRLVDHLLHTASFKLTKLQFLILDEADRLLE 492
Query: 557 QGYERDIAEFLEILKKQK--------PQFQSILLSATLTPAVQRLAGMTLQNPIQIDAAD 608
GYERD+ + +E + KQ+ PQ Q +LLSATLT VQ+LAG+TL+NP+ ID +D
Sbjct: 493 LGYERDVKQLVEAIDKQRAECEDKELPQLQRMLLSATLTSQVQQLAGLTLKNPLYIDNSD 552
|
|
| UNIPROTKB|F1S0U0 DDX31 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 665 (239.2 bits), Expect = 2.5e-65, P = 2.5e-65
Identities = 149/345 (43%), Positives = 220/345 (63%)
Query: 355 EVKSG-PISSLFQNNPDIPNVPTRRLKPVSEALFAPTSYEEFPGIHPFMKKNLNEGMNIT 413
E K G SSLF+NNP+IP + +K E++F +++ +HP + +N + ++
Sbjct: 150 ERKPGVKTSSLFRNNPEIPALLRPAVKQRQESVFTSDAFQALD-LHPHLISTINTVLKMS 208
Query: 414 QVTTVQQLSIQPILDGGDVLVRSQTGS-GKTLAYAIPIIQKLQEMRPKISRKDGIYAVII 472
+T++Q+ SI +L+G D LVRSQTGS GKTLAY IP++Q LQ ++PKI R DG YA+I+
Sbjct: 209 SLTSIQKQSIPVLLEGRDALVRSQTGSEGKTLAYCIPMVQSLQAVKPKIQRGDGPYALIL 268
Query: 473 LPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHC 532
+PTRELALQ+ + KL K FTWIVP L GGEK KSEKAR+RKGI+IL++TPGRL+DH
Sbjct: 269 VPTRELALQSFDTVQKLLKPFTWIVPGVLMGGEKRKSEKARLRKGINILISTPGRLVDHI 328
Query: 533 KHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPAVQR 592
K T+ ++F ++ L+LDEADR+LD G+E+DIA L + ++P+ Q++LLSATLT V R
Sbjct: 329 KSTKNMRFCRIRWLILDEADRLLDLGFEKDIALILNAVNAERPERQNVLLSATLTEGVTR 388
Query: 593 LAGMTLQNPIQIDAAD-STD-IHNTTDSLV--IPDSLKQHF--IVTPPKLR----LVA-- 640
LA ++L P++I + S D +H + +++ P + P L LV
Sbjct: 389 LADISLHEPVRISVLEGSQDQMHPKSRAILGASPPAASSELDGFAIPVGLEQHVALVPSK 448
Query: 641 --LASFILGKCQNVNEDEESKMLVFMATQDMADYHTEL-LSTVLG 682
L S Q + + KM+VF ++ ++ ++H L L T+LG
Sbjct: 449 LRLVSLAAFILQKCKFEPDQKMIVFFSSCELVEFHHSLFLQTLLG 493
|
|
| ZFIN|ZDB-GENE-030131-3973 ddx31 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 31" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 751 (269.4 bits), Expect = 5.2e-77, Sum P(2) = 5.2e-77
Identities = 147/332 (44%), Positives = 228/332 (68%)
Query: 362 SSLFQNNPDIPNVPTRRLKPVSEALFAPTSYEEFPGIHPFMKKNLNEGMNITQVTTVQQL 421
SSLF+NNP+IP+V + + V E +F ++EE +HP + L++ +N++ +T+VQ+
Sbjct: 126 SSLFRNNPEIPDVLSPAVNQVKEKVFTSNTFEEL-NLHPHLVATLHKVLNVSSMTSVQKQ 184
Query: 422 SIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQ 481
+I ++ G D +VRSQTGSGKTLAY IP++Q LQ ++PK+ R DG AV+I+PTRELALQ
Sbjct: 185 TIPVLMSGKDAVVRSQTGSGKTLAYGIPMVQFLQAIQPKVKRSDGPLAVVIVPTRELALQ 244
Query: 482 TLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFS 541
+ ++F KL + FTWIVP L GGEK K+EKAR+RKGI++L++TPGRL+DH K+T ++ FS
Sbjct: 245 SFQMFQKLLRPFTWIVPGVLMGGEKKKAEKARLRKGINVLISTPGRLVDHIKNTLSIAFS 304
Query: 542 KVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNP 601
V L+LDEADRILD G+E+D+ L L P Q++LLSAT+T + RLA +++++P
Sbjct: 305 AVRWLILDEADRILDLGFEKDLTVILNALNAAGPDRQNVLLSATITEGLSRLASISMKDP 364
Query: 602 IQIDAADSTDI----------HNTTDSLVIPDSLKQHFIVTPPKLRLVALASFILGKCQN 651
+ + ++ ++ +DS +P+ L+QH +V P KL LV LA+FIL KC+
Sbjct: 365 VSVHVSEGSEETVEACPQAAPQALSDSYAVPERLQQHVVVVPSKLHLVCLAAFILAKCKF 424
Query: 652 VNEDEESKMLVFMATQDMADYHTELLSTVLGE 683
++ K+++F+++ + ++ L + VL E
Sbjct: 425 ---EQRQKLIIFISSCEAVEFLLNLFTAVLCE 453
|
|
| UNIPROTKB|F8WAJ0 DDX31 "Probable ATP-dependent RNA helicase DDX31" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 691 (248.3 bits), Expect = 4.4e-68, P = 4.4e-68
Identities = 153/338 (45%), Positives = 212/338 (62%)
Query: 362 SSLFQNNPDIPNVPTRRLKPVSEALFAPTSYEEFPGIHPFMKKNLNEGMNITQVTTVQQL 421
SSLF+NNPDIP + +K V E +F ++ E G+HP + +N + ++ +T+VQ+
Sbjct: 73 SSLFKNNPDIPELHRPVVKQVQEKVFTSAAFHEL-GLHPHLISTINTVLKMSSMTSVQKQ 131
Query: 422 SIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQ 481
SI +L+G D LVRSQTGSGKTLAY IP++Q LQ M KI R DG YA++++PTRELALQ
Sbjct: 132 SIPVLLEGRDALVRSQTGSGKTLAYCIPVVQSLQAMESKIQRSDGPYALVLVPTRELALQ 191
Query: 482 TLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFS 541
+ + KL K FTWIVP L GGEK KSEKAR+RKGI+IL++TPGRL+DH K T+ + FS
Sbjct: 192 SFDTVQKLLKPFTWIVPGVLMGGEKRKSEKARLRKGINILISTPGRLVDHIKSTKNIHFS 251
Query: 542 KVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNP 601
++ LV DEADRILD G+E+DI L + + + Q++LLSATLT V RLA ++L +P
Sbjct: 252 RLRWLVFDEADRILDLGFEKDITVILNAVNAECQKRQNVLLSATLTEGVTRLADISLHDP 311
Query: 602 IQIDAAD-STDIHNTTDSLV---IP----DSLKQHFIVTPPKLRLVALASFILGKC---- 649
+ I D S D N D V P D L I K + + S + C
Sbjct: 312 VSISVLDKSHDQLNPKDKAVQEVCPPPAGDKLDSFAIPESLKQHVTVVPSKLRLVCLAAF 371
Query: 650 --QNVNEDEESKMLVFMATQDMADYHTEL-LSTVLGEN 684
Q +E+ KM+VF ++ ++ ++H L L T+L +
Sbjct: 372 ILQKCKFEEDQKMVVFFSSCELVEFHYSLFLQTLLSSS 409
|
|
| UNIPROTKB|F1NM06 DDX31 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 681 (244.8 bits), Expect = 5.1e-67, P = 5.1e-67
Identities = 145/337 (43%), Positives = 210/337 (62%)
Query: 362 SSLFQNNPDIPNVPTRRLKPVSEALFAPTSYEEFPGIHPFMKKNLNEGMNITQVTTVQQL 421
SSLF+NNPDIP + + ++ V E +F S+ + +HP + + + I +T+VQ+
Sbjct: 68 SSLFRNNPDIPEIHRKAVQQVQENVFTTDSFSQLD-LHPHLIATITTVLKICSMTSVQKQ 126
Query: 422 SIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQ 481
+I +L G D LVRSQTGSGKTLAY IP++Q LQ M+ KI R DG YA++++PTRELALQ
Sbjct: 127 TIPVLLQGKDALVRSQTGSGKTLAYGIPLVQSLQGMQSKIQRSDGPYALVLVPTRELALQ 186
Query: 482 TLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFS 541
T + KL K FTWIVP L GGEK KSEKAR+RKGI+IL++TPGRL+DH K TE + F
Sbjct: 187 TFDTIQKLLKPFTWIVPGVLMGGEKRKSEKARLRKGINILISTPGRLVDHIKSTECIHFR 246
Query: 542 KVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNP 601
+ + L++DEADRILD G+E+D+ L L ++ Q++LLSATLT V RLA ++L +P
Sbjct: 247 RTQWLIIDEADRILDLGFEKDVTVILNALNAERETRQNVLLSATLTEGVTRLADISLNDP 306
Query: 602 IQIDAADSTD------IHNTTDSLVIPDSLKQHFIVTPPKLRL--------VALASFILG 647
I+I AD + ++ + + Q P KL+ + L +
Sbjct: 307 IRISIADEIRESLKPALQTEKEANSSSNRMDQENFAVPEKLKQYFMMVPSKLRLVTLAAF 366
Query: 648 KCQNVNEDEESKMLVFMATQDMADYHTELLSTVL-GE 683
+ +++ KM++F ++ + ++H ELL VL GE
Sbjct: 367 VLEKCKYEKQHKMIIFFSSCEQVEFHYELLVNVLSGE 403
|
|
| UNIPROTKB|F1N5H8 DDX31 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 668 (240.2 bits), Expect = 1.2e-65, P = 1.2e-65
Identities = 150/353 (42%), Positives = 218/353 (61%)
Query: 355 EVKSGP-ISSLFQNNPDIPNVPTRRLKPVSEALFAPTSYEEFPGIHPFMKKNLNEGMNIT 413
E K G SSLF+NNP+IP +P +K V E +F +++ +HP + +N + ++
Sbjct: 96 ERKPGAKTSSLFKNNPEIPELPRPVVKQVQEKVFTSDAFQALD-LHPHLISTINTVLKMS 154
Query: 414 QVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIIL 473
+T+VQ+ SI +L+G D LVRSQTGSGKTLAY IP++Q LQ M+ KI R DG YA+I++
Sbjct: 155 SMTSVQKQSIPVLLEGRDALVRSQTGSGKTLAYCIPVVQSLQAMQSKIQRGDGPYALILV 214
Query: 474 PTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCK 533
PTRELALQ+ + KL K FTWIVP L GGEK KSEKAR+RKGI+IL++TPGRL+DH K
Sbjct: 215 PTRELALQSFDTVQKLLKPFTWIVPGVLMGGEKRKSEKARLRKGINILISTPGRLVDHIK 274
Query: 534 HTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPAVQRL 593
T+ + F ++ L+LDEADRILD G+E+D+ L + + + Q++LLSATLT V RL
Sbjct: 275 STKNIHFRQIRWLILDEADRILDLGFEKDLTVILNAVNAECQERQNVLLSATLTEGVARL 334
Query: 594 AGMTLQNPIQIDAAD-STDIHNTTDSLVI----P---DSLKQHFIVTPPKLRLVALASFI 645
A ++L +P+ I D S D+ + + P D L I + +V + S +
Sbjct: 335 ADISLHDPVSISVLDESHDVSSPESEAFLEASPPQATDELDGFAIPAGLEQHVVVVPSKL 394
Query: 646 LGKC------QNVNEDEESKMLVFMATQDMADYH-TELLSTVLGENIAFFKLH 691
C Q + + K++VF ++ ++ ++H T L T+L + A H
Sbjct: 395 RLVCLAAFILQKCKFERDQKVIVFFSSCELVEFHYTLFLQTLLSGSGALAPEH 447
|
|
| UNIPROTKB|Q9H8H2 DDX31 "Probable ATP-dependent RNA helicase DDX31" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 691 (248.3 bits), Expect = 3.3e-71, Sum P(2) = 3.3e-71
Identities = 153/338 (45%), Positives = 212/338 (62%)
Query: 362 SSLFQNNPDIPNVPTRRLKPVSEALFAPTSYEEFPGIHPFMKKNLNEGMNITQVTTVQQL 421
SSLF+NNPDIP + +K V E +F ++ E G+HP + +N + ++ +T+VQ+
Sbjct: 202 SSLFKNNPDIPELHRPVVKQVQEKVFTSAAFHEL-GLHPHLISTINTVLKMSSMTSVQKQ 260
Query: 422 SIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQ 481
SI +L+G D LVRSQTGSGKTLAY IP++Q LQ M KI R DG YA++++PTRELALQ
Sbjct: 261 SIPVLLEGRDALVRSQTGSGKTLAYCIPVVQSLQAMESKIQRSDGPYALVLVPTRELALQ 320
Query: 482 TLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFS 541
+ + KL K FTWIVP L GGEK KSEKAR+RKGI+IL++TPGRL+DH K T+ + FS
Sbjct: 321 SFDTVQKLLKPFTWIVPGVLMGGEKRKSEKARLRKGINILISTPGRLVDHIKSTKNIHFS 380
Query: 542 KVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNP 601
++ LV DEADRILD G+E+DI L + + + Q++LLSATLT V RLA ++L +P
Sbjct: 381 RLRWLVFDEADRILDLGFEKDITVILNAVNAECQKRQNVLLSATLTEGVTRLADISLHDP 440
Query: 602 IQIDAAD-STDIHNTTDSLV---IP----DSLKQHFIVTPPKLRLVALASFILGKC---- 649
+ I D S D N D V P D L I K + + S + C
Sbjct: 441 VSISVLDKSHDQLNPKDKAVQEVCPPPAGDKLDSFAIPESLKQHVTVVPSKLRLVCLAAF 500
Query: 650 --QNVNEDEESKMLVFMATQDMADYHTEL-LSTVLGEN 684
Q +E+ KM+VF ++ ++ ++H L L T+L +
Sbjct: 501 ILQKCKFEEDQKMVVFFSSCELVEFHYSLFLQTLLSSS 538
|
|
| RGD|1304895 Ddx31 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 31" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 770 (276.1 bits), Expect = 1.9e-76, P = 1.9e-76
Identities = 159/329 (48%), Positives = 226/329 (68%)
Query: 362 SSLFQNNPDIPNVPTRRLKPVSEALFAPTSYEEFPGIHPFMKKNLNEGMNITQVTTVQQL 421
SSLF+NNP+IP + +K E +F+P +++E +HP + +N + ++ +T+VQ+
Sbjct: 75 SSLFKNNPEIPELHRTVVKQAREQVFSPEAFQELD-LHPHLISTINTVLKMSSMTSVQKQ 133
Query: 422 SIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQ 481
SI +L+G D LVRSQTGSGKTLAY IP++Q LQ + KI R DG YA++++PTRELALQ
Sbjct: 134 SIPVLLEGRDALVRSQTGSGKTLAYCIPVVQSLQALTSKIQRSDGPYALVLVPTRELALQ 193
Query: 482 TLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFS 541
+ + KL K FTWIVP L GGEK KSEKAR+RKGI+IL++TPGRL+DH K T+ + F+
Sbjct: 194 SFDTVQKLLKPFTWIVPGVLMGGEKRKSEKARLRKGINILISTPGRLVDHIKSTKNIHFN 253
Query: 542 KVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNP 601
+V LV+DEADRILD G+E+D+ L + + + Q++LLSATLT V RLA ++L NP
Sbjct: 254 RVRWLVVDEADRILDLGFEKDVTVILNAVNAECQKRQNVLLSATLTEGVTRLADISLHNP 313
Query: 602 IQIDAAD-STDIHNTT-------DSLVIPDSLKQHFIVTPPKLRLVALASFILGKCQNVN 653
+ I D S D N DS IP+SL Q+ ++ P KLRLV LA+FIL KC+
Sbjct: 314 VSISVLDKSWDQPNPKEVASIQLDSFAIPESLDQYVVLVPSKLRLVCLAAFILKKCKF-- 371
Query: 654 EDEESKMLVFMATQDMADYHTEL-LSTVL 681
+++ KM+VF ++ ++ ++H L L T+L
Sbjct: 372 -EKDQKMIVFFSSCELVEFHYNLFLHTLL 399
|
|
| DICTYBASE|DDB_G0271708 ddx31 "DEAD/DEAH box helicase" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 535 (193.4 bits), Expect = 1.4e-89, Sum P(2) = 1.4e-89
Identities = 119/265 (44%), Positives = 166/265 (62%)
Query: 404 KNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISR 463
+NL M + T +Q+ SI PIL G D LV++QTGSGKTL+Y IP++QKL E R ++R
Sbjct: 220 RNLVGHMKHEKPTHIQEASITPILKGNDALVKAQTGSGKTLSYLIPVVQKLTEQR--VTR 277
Query: 464 KDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVA 523
DG Y VII PTREL+ Q E KL K F WIVP + GGE +EKARIRKGI+ILVA
Sbjct: 278 SDGCYCVIITPTRELSSQIYEELQKLLKPFYWIVPGIIMGGENRSAEKARIRKGINILVA 337
Query: 524 TPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEIL--KKQKPQF--QS 579
TPGRLLDH ++T++ ++ +LDEAD++LD G+E+D+ + +L KK+ +F Q+
Sbjct: 338 TPGRLLDHLQNTQSFPTDNIKWCILDEADKLLDLGFEKDVTTIINLLDSKKRTMKFKRQN 397
Query: 580 ILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHN--------TTDSLVIPDSLKQHFIV 631
IL+SATL+ + RLA ++L +P+ I DS + + L P L Q ++
Sbjct: 398 ILVSATLSEGISRLASLSLTSPVYI-GLDSKVLEKGENPFQAAEKEMLQAPKQLDQFYVE 456
Query: 632 TPPKLRLVALASFILGKCQNVNEDE 656
K RL +L +FI K N+ D+
Sbjct: 457 VESKERLTSLIAFIRWKTSNITIDK 481
|
|
| TAIR|locus:2064844 AT2G40700 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 466 (169.1 bits), Expect = 4.8e-88, Sum P(2) = 4.8e-88
Identities = 108/261 (41%), Positives = 151/261 (57%)
Query: 386 LFAPTSYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLA 445
LFA S+ G+ + L E M T VQ +I IL G DVLV + TG+GKT+A
Sbjct: 25 LFASCSFSSL-GLDTKLSDQLKERMGFEAPTLVQAQAIPVILSGRDVLVNAPTGTGKTIA 83
Query: 446 YAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGE 505
Y P+I LQ PK+ R G +A++I+PTREL LQ E KL F WIVP ++ GGE
Sbjct: 84 YLAPLIHHLQGHSPKVDRSHGTFALVIVPTRELCLQVYETLEKLLHRFHWIVPGYVMGGE 143
Query: 506 KMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAE 565
K EKAR+RKGISIL+ATPGRLLDH K+T + + ++ DEAD IL+ GY ++I +
Sbjct: 144 KKAKEKARLRKGISILIATPGRLLDHLKNTASFVHKNLRWVIFDEADSILELGYGKEIEQ 203
Query: 566 FLEILKKQK----------P---QFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDI 612
+++L + P Q Q++LLSATL V LA ++L +P+ I D+T +
Sbjct: 204 IIKLLGSGQNEQGEEDDIVPKGIQKQNLLLSATLNDKVNDLAKLSLDDPVMI-GLDNTKL 262
Query: 613 HN--TTDSLVIPDSLKQHFIV 631
+ +S PDS + ++
Sbjct: 263 QQNLSIESPAAPDSDAEDMVI 283
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 3.6.4.13 | 0.737 |
| 3rd Layer | 3.6.4 | 0.691 |
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 930 | |||
| COG0513 | 513 | COG0513, SrmB, Superfamily II DNA and RNA helicase | 4e-94 | |
| cd00268 | 203 | cd00268, DEADc, DEAD-box helicases | 1e-62 | |
| PRK11776 | 460 | PRK11776, PRK11776, ATP-dependent RNA helicase Dbp | 8e-60 | |
| PRK10590 | 456 | PRK10590, PRK10590, ATP-dependent RNA helicase Rhl | 2e-57 | |
| cd00268 | 203 | cd00268, DEADc, DEAD-box helicases | 4e-56 | |
| PTZ00110 | 545 | PTZ00110, PTZ00110, helicase; Provisional | 5e-53 | |
| PRK11192 | 434 | PRK11192, PRK11192, ATP-dependent RNA helicase Srm | 2e-51 | |
| COG0513 | 513 | COG0513, SrmB, Superfamily II DNA and RNA helicase | 2e-48 | |
| pfam00270 | 169 | pfam00270, DEAD, DEAD/DEAH box helicase | 9e-47 | |
| pfam00270 | 169 | pfam00270, DEAD, DEAD/DEAH box helicase | 2e-45 | |
| PRK01297 | 475 | PRK01297, PRK01297, ATP-dependent RNA helicase Rhl | 5e-44 | |
| PRK11634 | 629 | PRK11634, PRK11634, ATP-dependent RNA helicase Dea | 4e-43 | |
| PLN00206 | 518 | PLN00206, PLN00206, DEAD-box ATP-dependent RNA hel | 7e-41 | |
| PRK04537 | 572 | PRK04537, PRK04537, ATP-dependent RNA helicase Rhl | 3e-40 | |
| smart00487 | 201 | smart00487, DEXDc, DEAD-like helicases superfamily | 7e-39 | |
| PRK04837 | 423 | PRK04837, PRK04837, ATP-dependent RNA helicase Rhl | 4e-37 | |
| PTZ00424 | 401 | PTZ00424, PTZ00424, helicase 45; Provisional | 5e-37 | |
| smart00487 | 201 | smart00487, DEXDc, DEAD-like helicases superfamily | 8e-35 | |
| cd00046 | 144 | cd00046, DEXDc, DEAD-like helicases superfamily | 9e-33 | |
| cd00046 | 144 | cd00046, DEXDc, DEAD-like helicases superfamily | 9e-33 | |
| PRK11776 | 460 | PRK11776, PRK11776, ATP-dependent RNA helicase Dbp | 4e-30 | |
| cd00079 | 131 | cd00079, HELICc, Helicase superfamily c-terminal d | 4e-30 | |
| PRK10590 | 456 | PRK10590, PRK10590, ATP-dependent RNA helicase Rhl | 6e-30 | |
| PRK11192 | 434 | PRK11192, PRK11192, ATP-dependent RNA helicase Srm | 6e-27 | |
| pfam00271 | 78 | pfam00271, Helicase_C, Helicase conserved C-termin | 7e-26 | |
| PRK11634 | 629 | PRK11634, PRK11634, ATP-dependent RNA helicase Dea | 2e-23 | |
| smart00490 | 82 | smart00490, HELICc, helicase superfamily c-termina | 2e-23 | |
| PRK01297 | 475 | PRK01297, PRK01297, ATP-dependent RNA helicase Rhl | 6e-23 | |
| PRK04537 | 572 | PRK04537, PRK04537, ATP-dependent RNA helicase Rhl | 2e-22 | |
| PLN00206 | 518 | PLN00206, PLN00206, DEAD-box ATP-dependent RNA hel | 5e-22 | |
| PTZ00110 | 545 | PTZ00110, PTZ00110, helicase; Provisional | 6e-22 | |
| COG1201 | 814 | COG1201, Lhr, Lhr-like helicases [General function | 9e-21 | |
| PRK04837 | 423 | PRK04837, PRK04837, ATP-dependent RNA helicase Rhl | 3e-18 | |
| pfam13959 | 64 | pfam13959, DUF4217, Domain of unknown function (DU | 8e-17 | |
| PTZ00424 | 401 | PTZ00424, PTZ00424, helicase 45; Provisional | 1e-16 | |
| COG1205 | 851 | COG1205, COG1205, Distinct helicase family with a | 8e-13 | |
| COG1201 | 814 | COG1201, Lhr, Lhr-like helicases [General function | 3e-11 | |
| TIGR00614 | 470 | TIGR00614, recQ_fam, ATP-dependent DNA helicase, R | 3e-11 | |
| COG0514 | 590 | COG0514, RecQ, Superfamily II DNA helicase [DNA re | 4e-11 | |
| smart00487 | 201 | smart00487, DEXDc, DEAD-like helicases superfamily | 2e-09 | |
| COG1111 | 542 | COG1111, MPH1, ERCC4-like helicases [DNA replicati | 2e-09 | |
| TIGR01389 | 591 | TIGR01389, recQ, ATP-dependent DNA helicase RecQ | 4e-09 | |
| pfam00270 | 169 | pfam00270, DEAD, DEAD/DEAH box helicase | 8e-09 | |
| PTZ00110 | 545 | PTZ00110, PTZ00110, helicase; Provisional | 6e-08 | |
| COG1061 | 442 | COG1061, SSL2, DNA or RNA helicases of superfamily | 5e-07 | |
| COG1204 | 766 | COG1204, COG1204, Superfamily II helicase [General | 5e-07 | |
| COG1205 | 851 | COG1205, COG1205, Distinct helicase family with a | 7e-07 | |
| cd00046 | 144 | cd00046, DEXDc, DEAD-like helicases superfamily | 1e-06 | |
| PRK13767 | 876 | PRK13767, PRK13767, ATP-dependent helicase; Provis | 1e-06 | |
| PRK13767 | 876 | PRK13767, PRK13767, ATP-dependent helicase; Provis | 1e-06 | |
| COG1204 | 766 | COG1204, COG1204, Superfamily II helicase [General | 2e-06 | |
| PRK13766 | 773 | PRK13766, PRK13766, Hef nuclease; Provisional | 3e-06 | |
| TIGR04121 | 803 | TIGR04121, DEXH_lig_assoc, DEXH box helicase, DNA | 7e-06 | |
| PRK09751 | 1490 | PRK09751, PRK09751, putative ATP-dependent helicas | 7e-05 | |
| PRK01297 | 475 | PRK01297, PRK01297, ATP-dependent RNA helicase Rhl | 2e-04 | |
| TIGR00643 | 630 | TIGR00643, recG, ATP-dependent DNA helicase RecG | 8e-04 | |
| PRK11634 | 629 | PRK11634, PRK11634, ATP-dependent RNA helicase Dea | 0.001 | |
| PRK04837 | 423 | PRK04837, PRK04837, ATP-dependent RNA helicase Rhl | 0.002 | |
| TIGR00614 | 470 | TIGR00614, recQ_fam, ATP-dependent DNA helicase, R | 0.003 |
| >gnl|CDD|223587 COG0513, SrmB, Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 306 bits (786), Expect = 4e-94
Identities = 130/397 (32%), Positives = 210/397 (52%), Gaps = 27/397 (6%)
Query: 389 PTSYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAI 448
P + G+ P + + L + + + T +Q +I IL G DVL ++QTG+GKT A+ +
Sbjct: 28 PPEFASL-GLSPELLQALKD-LGFEEPTPIQLAAIPLILAGRDVLGQAQTGTGKTAAFLL 85
Query: 449 PIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMK 508
P++QK+ K + + A+I+ PTRELA+Q E KL K+ + + + GG ++
Sbjct: 86 PLLQKIL----KSVERKYVSALILAPTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIR 141
Query: 509 SEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLE 568
+ +++G+ I+VATPGRLLD L S VE LVLDEADR+LD G+ DI +
Sbjct: 142 KQIEALKRGVDIVVATPGRLLDL-IKRGKLDLSGVETLVLDEADRMLDMGFIDDI---EK 197
Query: 569 ILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQH 628
ILK P Q++L SAT+ ++ LA L +P++I+ + +KQ
Sbjct: 198 ILKALPPDRQTLLFSATMPDDIRELARRYLNDPVEIEVSVEK-------LERTLKKIKQF 250
Query: 629 FIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFF 688
++ + + L +L +++E +++VF+ T+ + + E L
Sbjct: 251 YLEVESEEEKLELLLKLL------KDEDEGRVIVFVRTKRLVEELAESLRK---RGFKVA 301
Query: 689 KLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRV 748
LHG + Q ER + F+ + VL+ TDVAARGLD+P V ++ Y P DYVHR+
Sbjct: 302 ALHGDLPQEERDRALEKFKDGELRVLVATDVAARGLDIPDVSHVINYDLPLDPEDYVHRI 361
Query: 749 GRTARVGHEGSSLLFLIPS-EVKLVEELQNRRIRIEE 784
GRT R G +G ++ F+ EVK ++ ++ R R
Sbjct: 362 GRTGRAGRKGVAISFVTEEEEVKKLKRIEKRLERKLP 398
|
Length = 513 |
| >gnl|CDD|238167 cd00268, DEADc, DEAD-box helicases | Back alignment and domain information |
|---|
Score = 210 bits (536), Expect = 1e-62
Identities = 87/208 (41%), Positives = 130/208 (62%), Gaps = 10/208 (4%)
Query: 397 GIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQE 456
G+ P + + + + + T +Q +I P+L G DV+ ++QTGSGKT A+ IPI++KL
Sbjct: 5 GLSPELLRGIYA-LGFEKPTPIQARAIPPLLSGRDVIGQAQTGSGKTAAFLIPILEKLDP 63
Query: 457 MRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRK 516
+KDG A+I+ PTRELALQ E+ KL K T + + GG + + ++++
Sbjct: 64 SP----KKDGPQALILAPTRELALQIAEVARKLGK-HTNLKVVVIYGGTSIDKQIRKLKR 118
Query: 517 GISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQ 576
G I+VATPGRLLD + L SKV++LVLDEADR+LD G+E I E L++L K +
Sbjct: 119 GPHIVVATPGRLLDLLERG-KLDLSKVKYLVLDEADRMLDMGFEDQIREILKLLPKDR-- 175
Query: 577 FQSILLSATLTPAVQRLAGMTLQNPIQI 604
Q++L SAT+ V+ LA L+NP++I
Sbjct: 176 -QTLLFSATMPKEVRDLARKFLRNPVRI 202
|
A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region. Length = 203 |
| >gnl|CDD|236977 PRK11776, PRK11776, ATP-dependent RNA helicase DbpA; Provisional | Back alignment and domain information |
|---|
Score = 211 bits (539), Expect = 8e-60
Identities = 126/412 (30%), Positives = 202/412 (49%), Gaps = 55/412 (13%)
Query: 388 APTSYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYA 447
+ T++ P + P + NLNE + T++T +Q S+ IL G DV+ +++TGSGKT A+
Sbjct: 2 SMTAFSTLP-LPPALLANLNE-LGYTEMTPIQAQSLPAILAGKDVIAQAKTGSGKTAAFG 59
Query: 448 IPIIQKLQEMRPKISRKDGIYAVIILPTRELALQ-TLEI-----FTKLCKSFTWIVPSWL 501
+ ++QKL R ++ A+++ PTRELA Q EI F K T L
Sbjct: 60 LGLLQKLDVKRFRVQ------ALVLCPTRELADQVAKEIRRLARFIPNIKVLT------L 107
Query: 502 TGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYER 561
GG M + + G I+V TPGR+LDH + TL + LVLDEADR+LD G++
Sbjct: 108 CGGVPMGPQIDSLEHGAHIIVGTPGRILDHLRK-GTLDLDALNTLVLDEADRMLDMGFQD 166
Query: 562 DIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVI 621
I I+++ + Q++L SAT + ++ ++P+++ +S
Sbjct: 167 AID---AIIRQAPARRQTLLFSATYPEGIAAISQRFQRDPVEV----------KVESTHD 213
Query: 622 PDSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMAT----QDMADYHTELL 677
+++Q F P RL AL +L Q + +VF T Q++AD
Sbjct: 214 LPAIEQRFYEVSPDERLPALQR-LLLHHQPES------CVVFCNTKKECQEVADALNAQG 266
Query: 678 STVLGENIAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTA 737
+ L LHG + Q +R +V F + VL+ TDVAARGLD+ ++ ++ Y
Sbjct: 267 FSALA-------LHGDLEQRDRDQVLVRFANRSCSVLVATDVAARGLDIKALEAVINYEL 319
Query: 738 PSSSTDYVHRVGRTARVGHEGSSLLFLIPSE---VKLVEELQNRRIRIEEIK 786
+VHR+GRT R G +G +L + P E +E+ R++ E +
Sbjct: 320 ARDPEVHVHRIGRTGRAGSKGLALSLVAPEEMQRANAIEDYLGRKLNWEPLP 371
|
Length = 460 |
| >gnl|CDD|236722 PRK10590, PRK10590, ATP-dependent RNA helicase RhlE; Provisional | Back alignment and domain information |
|---|
Score = 204 bits (520), Expect = 2e-57
Identities = 130/368 (35%), Positives = 197/368 (53%), Gaps = 27/368 (7%)
Query: 416 TTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPT 475
T +QQ +I +L+G D++ +QTG+GKT + +P++Q L +P + + A+I+ PT
Sbjct: 25 TPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILTPT 84
Query: 476 RELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHT 535
RELA Q E K + I + GG + + ++R G+ +LVATPGRLLD +H
Sbjct: 85 RELAAQIGENVRDYSK-YLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLD-LEHQ 142
Query: 536 ETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAG 595
+K +VE LVLDEADR+LD G+ DI +L K + Q++L SAT + ++ LA
Sbjct: 143 NAVKLDQVEILVLDEADRMLDMGFIHDIRR---VLAKLPAKRQNLLFSATFSDDIKALAE 199
Query: 596 MTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALASFILGKCQNVNED 655
L NP++I+ A NT V + HF+ K R L S ++G +
Sbjct: 200 KLLHNPLEIEVAR----RNTASEQV---TQHVHFV---DKKRKRELLSQMIG------KG 243
Query: 656 EESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSVKSGVLI 715
++LVF T+ A++ E L+ + I +HG+ SQ RT F+S VL+
Sbjct: 244 NWQQVLVFTRTKHGANHLAEQLNK---DGIRSAAIHGNKSQGARTRALADFKSGDIRVLV 300
Query: 716 CTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPSEVKL---V 772
TD+AARGLD+ + +V Y P+ DYVHR+GRT R G +L + E KL +
Sbjct: 301 ATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDI 360
Query: 773 EELQNRRI 780
E+L + I
Sbjct: 361 EKLLKKEI 368
|
Length = 456 |
| >gnl|CDD|238167 cd00268, DEADc, DEAD-box helicases | Back alignment and domain information |
|---|
Score = 191 bits (489), Expect = 4e-56
Identities = 78/180 (43%), Positives = 113/180 (62%), Gaps = 9/180 (5%)
Query: 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYA 60
+ + T +Q +I P+L G DV+ ++QTGSGKT A+ IPI++KL +KDG A
Sbjct: 17 LGFEKPTPIQARAIPPLLSGRDVIGQAQTGSGKTAAFLIPILEKLDPSP----KKDGPQA 72
Query: 61 VIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLL 120
+I+ PTRELALQ E+ KL K T + + GG + + ++++G I+VATPGRLL
Sbjct: 73 LILAPTRELALQIAEVARKLGK-HTNLKVVVIYGGTSIDKQIRKLKRGPHIVVATPGRLL 131
Query: 121 DHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPA 180
D + L SKV++LVLDEADR+LD G+E I E L++L K + Q++L SAT+
Sbjct: 132 DLLERG-KLDLSKVKYLVLDEADRMLDMGFEDQIREILKLLPKDR---QTLLFSATMPKE 187
|
A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region. Length = 203 |
| >gnl|CDD|240273 PTZ00110, PTZ00110, helicase; Provisional | Back alignment and domain information |
|---|
Score = 194 bits (494), Expect = 5e-53
Identities = 138/411 (33%), Positives = 211/411 (51%), Gaps = 50/411 (12%)
Query: 373 NVPTRRLKPVSEALFAPTSYEE--FPGIHPFMKKNLNEGMNITQVTTVQQLSIQ--PI-L 427
NVP KPV S+E FP ++ K+L T+ T +Q +Q PI L
Sbjct: 124 NVP----KPV-------VSFEYTSFPD---YILKSLKNA-GFTEPTPIQ---VQGWPIAL 165
Query: 428 DGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFT 487
G D++ ++TGSGKTLA+ +P I + +P + DG +++ PTRELA Q E
Sbjct: 166 SGRDMIGIAETGSGKTLAFLLPAIVHINA-QPLLRYGDGPIVLVLAPTRELAEQIREQCN 224
Query: 488 KLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLV 547
K S I + GG + + +R+G+ IL+A PGRL+D + T +V +LV
Sbjct: 225 KFGASSK-IRNTVAYGGVPKRGQIYALRRGVEILIACPGRLIDFLESNVT-NLRRVTYLV 282
Query: 548 LDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLA-GMTLQNPIQID- 605
LDEADR+LD G+E I + I+ + +P Q+++ SAT VQ LA + + P+ ++
Sbjct: 283 LDEADRMLDMGFEPQIRK---IVSQIRPDRQTLMWSATWPKEVQSLARDLCKEEPVHVNV 339
Query: 606 -AADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFM 664
+ D T HN +KQ V + L L + K+L+F+
Sbjct: 340 GSLDLTACHN----------IKQEVFVVEEHEKRGKLKML-LQRIMRDG----DKILIFV 384
Query: 665 ATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGL 724
T+ AD+ T+ L + +HG Q ERT V F++ KS ++I TDVA+RGL
Sbjct: 385 ETKKGADFLTKELRL---DGWPALCIHGDKKQEERTWVLNEFKTGKSPIMIATDVASRGL 441
Query: 725 DLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPSEVKLVEEL 775
D+ V +++ + P+ DYVHR+GRT R G +G+S FL P + +L +L
Sbjct: 442 DVKDVKYVINFDFPNQIEDYVHRIGRTGRAGAKGASYTFLTPDKYRLARDL 492
|
Length = 545 |
| >gnl|CDD|236877 PRK11192, PRK11192, ATP-dependent RNA helicase SrmB; Provisional | Back alignment and domain information |
|---|
Score = 186 bits (474), Expect = 2e-51
Identities = 129/390 (33%), Positives = 197/390 (50%), Gaps = 46/390 (11%)
Query: 390 TSYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIP 449
T++ E + + + L + T+ T +Q +I P LDG DVL + TG+GKT A+ +P
Sbjct: 1 TTFSELE-LDESLLEALQD-KGYTRPTAIQAEAIPPALDGRDVLGSAPTGTGKTAAFLLP 58
Query: 450 IIQKLQEMRPKISRKDGIYAVIIL-PTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMK 508
+Q L + P+ RK G ++IL PTRELA+Q + +L K T + + +TGG
Sbjct: 59 ALQHLLDF-PR--RKSGPPRILILTPTRELAMQVADQARELAK-HTHLDIATITGGVAYM 114
Query: 509 SEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLE 568
+ + I+VATPGRLL + K E VE L+LDEADR+LD G+ +DI
Sbjct: 115 NHAEVFSENQDIVVATPGRLLQYIK-EENFDCRAVETLILDEADRMLDMGFAQDIE---T 170
Query: 569 ILKKQKPQFQSILLSATLT-PAVQRLAGMTLQNPIQIDAADST----DIHNTTDSLVIPD 623
I + + + Q++L SATL AVQ A L +P++++A S IH D
Sbjct: 171 IAAETRWRKQTLLFSATLEGDAVQDFAERLLNDPVEVEAEPSRRERKKIHQ---WYYRAD 227
Query: 624 SLKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGE 683
L+ H K L L + + E ++ +VF+ T++ EL +
Sbjct: 228 DLE-H------KTAL--LCHLL-------KQPEVTRSIVFVRTRERV---HELAGWLRKA 268
Query: 684 NIAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTD 743
I L G M Q++R E K + VL+ TDVAARG+D+ V ++ + P S+
Sbjct: 269 GINCCYLEGEMVQAKRNEAIKRLTDGRVNVLVATDVAARGIDIDDVSHVINFDMPRSADT 328
Query: 744 YVHRVGRTARVGHEGSSLLFLIPSEVKLVE 773
Y+HR+GRT R G +G++ + LVE
Sbjct: 329 YLHRIGRTGRAGRKGTA--------ISLVE 350
|
Length = 434 |
| >gnl|CDD|223587 COG0513, SrmB, Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 180 bits (458), Expect = 2e-48
Identities = 72/180 (40%), Positives = 107/180 (59%), Gaps = 8/180 (4%)
Query: 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYA 60
+ + T +Q +I IL G DVL ++QTG+GKT A+ +P++QK+ K + + A
Sbjct: 47 LGFEEPTPIQLAAIPLILAGRDVLGQAQTGTGKTAAFLLPLLQKIL----KSVERKYVSA 102
Query: 61 VIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLL 120
+I+ PTRELA+Q E KL K+ + + + GG ++ + +++G+ I+VATPGRLL
Sbjct: 103 LILAPTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALKRGVDIVVATPGRLL 162
Query: 121 DHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPA 180
D L S VE LVLDEADR+LD G+ DI +ILK P Q++L SAT+
Sbjct: 163 DL-IKRGKLDLSGVETLVLDEADRMLDMGFIDDI---EKILKALPPDRQTLLFSATMPDD 218
|
Length = 513 |
| >gnl|CDD|215832 pfam00270, DEAD, DEAD/DEAH box helicase | Back alignment and domain information |
|---|
Score = 164 bits (417), Expect = 9e-47
Identities = 76/179 (42%), Positives = 106/179 (59%), Gaps = 11/179 (6%)
Query: 416 TTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPT 475
T +Q +I IL G DVLV++ TGSGKTLA+ +PI+Q L + +K G A+++ PT
Sbjct: 1 TPIQAQAIPAILSGKDVLVQAPTGSGKTLAFLLPILQAL------LPKKGGPQALVLAPT 54
Query: 476 RELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKG-ISILVATPGRLLDHCKH 534
RELA Q E KL K + + LTGG +K + +++KG ILV TPGRLLD +
Sbjct: 55 RELAEQIYEELKKLFK-ILGLRVALLTGGTSLKEQARKLKKGKADILVGTPGRLLDLLRR 113
Query: 535 TETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPAVQRL 593
+ ++ LVLDEA R+LD G+ D+ EIL + P Q +LLSATL ++ L
Sbjct: 114 GKLKLLKNLKLLVLDEAHRLLDMGFGDDLE---EILSRLPPDRQILLLSATLPRNLEDL 169
|
Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. Length = 169 |
| >gnl|CDD|215832 pfam00270, DEAD, DEAD/DEAH box helicase | Back alignment and domain information |
|---|
Score = 160 bits (407), Expect = 2e-45
Identities = 75/173 (43%), Positives = 103/173 (59%), Gaps = 11/173 (6%)
Query: 7 TTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPT 66
T +Q +I IL G DVLV++ TGSGKTLA+ +PI+Q L + +K G A+++ PT
Sbjct: 1 TPIQAQAIPAILSGKDVLVQAPTGSGKTLAFLLPILQAL------LPKKGGPQALVLAPT 54
Query: 67 RELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKG-ISILVATPGRLLDHCKH 125
RELA Q E KL K + + LTGG +K + +++KG ILV TPGRLLD +
Sbjct: 55 RELAEQIYEELKKLFK-ILGLRVALLTGGTSLKEQARKLKKGKADILVGTPGRLLDLLRR 113
Query: 126 TETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLT 178
+ ++ LVLDEA R+LD G+ D+ EIL + P Q +LLSATL
Sbjct: 114 GKLKLLKNLKLLVLDEAHRLLDMGFGDDLE---EILSRLPPDRQILLLSATLP 163
|
Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. Length = 169 |
| >gnl|CDD|234938 PRK01297, PRK01297, ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Score = 166 bits (421), Expect = 5e-44
Identities = 134/457 (29%), Positives = 211/457 (46%), Gaps = 56/457 (12%)
Query: 351 PKKTEVKSGPISSLFQNNPDIPNVPTRRLKPVSEALFAP-----------TSYEEFPGIH 399
+ P ++ + + P R KP +L+ T + +F +
Sbjct: 37 AAPATKAAAPAAAAPRAEKPKKDKPRRERKPKPASLWKLEDFVVEPQEGKTRFHDF-NLA 95
Query: 400 PFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRP 459
P + +++ + T +Q + L G D + R+QTG+GKT A+ I II +L + P
Sbjct: 96 PELMHAIHD-LGFPYCTPIQAQVLGYTLAGHDAIGRAQTGTGKTAAFLISIINQLLQTPP 154
Query: 460 KISRKDG-IYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGI 518
R G A+II PTREL +Q + L K V +++ G + K K +
Sbjct: 155 PKERYMGEPRALIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLKQLEARFC 214
Query: 519 SILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKK--QKPQ 576
ILVATPGRLLD + E + VE +VLDEADR+LD G+ I + +I+++ +K +
Sbjct: 215 DILVATPGRLLDFNQRGE-VHLDMVEVMVLDEADRMLDMGF---IPQVRQIIRQTPRKEE 270
Query: 577 FQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHF--IVTPP 634
Q++L SAT T V LA +P ++ V D+++QH +
Sbjct: 271 RQTLLFSATFTDDVMNLAKQWTTDPAIVEIEPEN---------VASDTVEQHVYAVAGSD 321
Query: 635 KLRLVALASFILGKCQN-VNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGS 693
K +L+ N V ++ +++VF +D E L G N A +L G
Sbjct: 322 KYKLL----------YNLVTQNPWERVMVFANRKDEVRRIEERL-VKDGINAA--QLSGD 368
Query: 694 MSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTAR 753
+ Q +R + + FR K VL+ TDVA RG+ + + ++ +T P DYVHR+GRT R
Sbjct: 369 VPQHKRIKTLEGFREGKIRVLVATDVAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGR 428
Query: 754 VGHEGSSLLFL-------IPSEVKLVEELQNRRIRIE 783
G G S+ F +P +EEL R+I E
Sbjct: 429 AGASGVSISFAGEDDAFQLPE----IEELLGRKISCE 461
|
Length = 475 |
| >gnl|CDD|236941 PRK11634, PRK11634, ATP-dependent RNA helicase DeaD; Provisional | Back alignment and domain information |
|---|
Score = 166 bits (422), Expect = 4e-43
Identities = 138/416 (33%), Positives = 212/416 (50%), Gaps = 49/416 (11%)
Query: 418 VQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQ-EMR-PKISRKDGIYAVIILPT 475
+Q I +L+G DVL +QTGSGKT A+++P++ L E++ P+I +++ PT
Sbjct: 32 IQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNLDPELKAPQI--------LVLAPT 83
Query: 476 RELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHT 535
RELA+Q E T K + L GG++ + +R+G I+V TPGRLLDH K
Sbjct: 84 RELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRG 143
Query: 536 ETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKP-QFQSILLSATLTPAVQRLA 594
TL SK+ LVLDEAD +L G+ D+ E + Q P Q+ L SAT+ A++R+
Sbjct: 144 -TLDLSKLSGLVLDEADEMLRMGFIEDV----ETIMAQIPEGHQTALFSATMPEAIRRIT 198
Query: 595 GMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALASFILGKCQNVNE 654
++ P ++ S TT PD + Q + + AL F+ E
Sbjct: 199 RRFMKEPQEVRIQSSV----TTR----PD-ISQSYWTVWGMRKNEALVRFLEA------E 243
Query: 655 DEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSVKSGVL 714
D ++ ++F+ T++ E L G N A L+G M+Q+ R + + + + +L
Sbjct: 244 DFDAA-IIFVRTKNATLEVAEALERN-GYNSA--ALNGDMNQALREQTLERLKDGRLDIL 299
Query: 715 ICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPSEVKLVEE 774
I TDVAARGLD+ + +V Y P S YVHR+GRT R G G +LLF+ E +L+
Sbjct: 300 IATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRN 359
Query: 775 LQ-NRRIRIEEIKLKDCLQNLLSVKMEGDLSRLADGNVETAATALQMSFESAVLQQ 829
++ ++ I E++L + LL + RL E A +Q ES+ L Q
Sbjct: 360 IERTMKLTIPEVELPNA--ELLGKR------RL-----EKFAAKVQQQLESSDLDQ 402
|
Length = 629 |
| >gnl|CDD|215103 PLN00206, PLN00206, DEAD-box ATP-dependent RNA helicase; Provisional | Back alignment and domain information |
|---|
Score = 158 bits (400), Expect = 7e-41
Identities = 111/378 (29%), Positives = 183/378 (48%), Gaps = 57/378 (15%)
Query: 416 TTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPK-ISRKDGIYAVIILP 474
T +Q +I L G +LV + TGSGKT ++ +PII + +R S + A+++ P
Sbjct: 145 TPIQMQAIPAALSGRSLLVSADTGSGKTASFLVPIISRCCTIRSGHPSEQRNPLAMVLTP 204
Query: 475 TRELALQTLEIFTKLCKSF---TWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLD- 530
TREL +Q + L K T +V GG+ M + RI++G+ ++V TPGRL+D
Sbjct: 205 TRELCVQVEDQAKVLGKGLPFKTALV----VGGDAMPQQLYRIQQGVELIVGTPGRLIDL 260
Query: 531 HCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPAV 590
KH L V LVLDE D +L++G+ + + + L Q Q +L SAT++P V
Sbjct: 261 LSKHDIEL--DNVSVLVLDEVDCMLERGFRDQVMQIFQAL----SQPQVLLFSATVSPEV 314
Query: 591 QRLAGMTLQNPIQIDAADSTDIHNTTDSLVI-----------PDSL--KQHFIVTPPKLR 637
++ A ++ I I + + L I D L KQHF PP
Sbjct: 315 EKFASSLAKDIILISIGNPNRPNKAVKQLAIWVETKQKKQKLFDILKSKQHF--KPP--- 369
Query: 638 LVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQS 697
+VF++++ AD ++ V G + +HG S
Sbjct: 370 ----------------------AVVFVSSRLGADLLANAITVVTG--LKALSIHGEKSMK 405
Query: 698 ERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHE 757
ER EV K+F + V++ T V RG+DL V ++ + P++ +Y+H++GR +R+G +
Sbjct: 406 ERREVMKSFLVGEVPVIVATGVLGRGVDLLRVRQVIIFDMPNTIKEYIHQIGRASRMGEK 465
Query: 758 GSSLLFLIPSEVKLVEEL 775
G++++F+ + L EL
Sbjct: 466 GTAIVFVNEEDRNLFPEL 483
|
Length = 518 |
| >gnl|CDD|235307 PRK04537, PRK04537, ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Score = 157 bits (398), Expect = 3e-40
Identities = 117/402 (29%), Positives = 202/402 (50%), Gaps = 63/402 (15%)
Query: 380 KPVSEALFAPTSYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTG 439
KP+++ F +S++ +HP + L E T+ T +Q L++ L GGDV ++QTG
Sbjct: 4 KPLTDLTF--SSFD----LHPALLAGL-ESAGFTRCTPIQALTLPVALPGGDVAGQAQTG 56
Query: 440 SGKTLAYAIPIIQKLQEMRPKISRK--DGIYAVIILPTRELALQ----TLEIFTKLCKSF 493
+GKTLA+ + ++ +L RP ++ + + A+I+ PTRELA+Q ++ L F
Sbjct: 57 TGKTLAFLVAVMNRLLS-RPALADRKPEDPRALILAPTRELAIQIHKDAVKFGADLGLRF 115
Query: 494 TWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADR 553
+ GG ++ +++G+ +++ATPGRL+D+ K + + E VLDEADR
Sbjct: 116 ALVY-----GGVDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEADR 170
Query: 554 ILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIH 613
+ D G+ +DI L + ++ + Q++L SATL+ V LA + P ++ T
Sbjct: 171 MFDLGFIKDIRFLLRRMPERGTR-QTLLFSATLSHRVLELAYEHMNEPEKLVVETET--- 226
Query: 614 NTTDSLVIPDSLKQ--HFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQ---- 667
+ ++Q +F K L +LG ++ E ++ +VF+ T+
Sbjct: 227 ------ITAARVRQRIYFPADEEKQTL------LLGL---LSRSEGARTMVFVNTKAFVE 271
Query: 668 ------DMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAA 721
+ Y +LS G + Q +R + F+ + +L+ TDVAA
Sbjct: 272 RVARTLERHGYRVGVLS-------------GDVPQKKRESLLNRFQKGQLEILVATDVAA 318
Query: 722 RGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLF 763
RGL + V ++ Y P + DYVHR+GRTAR+G EG ++ F
Sbjct: 319 RGLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISF 360
|
Length = 572 |
| >gnl|CDD|214692 smart00487, DEXDc, DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Score = 143 bits (361), Expect = 7e-39
Identities = 68/199 (34%), Positives = 104/199 (52%), Gaps = 12/199 (6%)
Query: 408 EGMNITQVTTVQQLSIQPILDG-GDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDG 466
E + Q+ +I+ +L G DV++ + TGSGKTLA +P ++ L+ R G
Sbjct: 2 EKFGFEPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALK-------RGKG 54
Query: 467 IYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPG 526
++++PTRELA Q E KL S V G K + + ILV TPG
Sbjct: 55 GRVLVLVPTRELAEQWAEELKKLGPSLGLKVVGLYGGDSKREQLRKLESGKTDILVTTPG 114
Query: 527 RLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATL 586
RLLD ++ + L S V+ ++LDEA R+LD G+ + + L++L K Q +LLSAT
Sbjct: 115 RLLDLLEN-DKLSLSNVDLVILDEAHRLLDGGFGDQLEKLLKLLPKNV---QLLLLSATP 170
Query: 587 TPAVQRLAGMTLQNPIQID 605
++ L + L +P+ ID
Sbjct: 171 PEEIENLLELFLNDPVFID 189
|
Length = 201 |
| >gnl|CDD|235314 PRK04837, PRK04837, ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Score = 144 bits (366), Expect = 4e-37
Identities = 110/392 (28%), Positives = 176/392 (44%), Gaps = 72/392 (18%)
Query: 397 GIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAI-------- 448
+HP + + L + T +Q L++ L G DV ++QTG+GKT+A+
Sbjct: 14 ALHPQVVEALEK-KGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTATFHYLLS 72
Query: 449 -PIIQKLQEMRPKISRKDGIYAVIILPTRELALQT---LEIFTKLCKSFTWIVPSWLTGG 504
P + + +P+ A+I+ PTRELA+Q E + + GG
Sbjct: 73 HPAPEDRKVNQPR--------ALIMAPTRELAVQIHADAEPLAQATGLKLGLA----YGG 120
Query: 505 EKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIA 564
+ + + G+ IL+ T GRL+D+ K + ++ +VLDEADR+ D G+ +DI
Sbjct: 121 DGYDKQLKVLESGVDILIGTTGRLIDYAKQ-NHINLGAIQVVVLDEADRMFDLGFIKDI- 178
Query: 565 EFLEILKKQKPQFQ--SILLSATLTPAVQRLAGMTLQNP--IQIDAADSTDIHNTTDSLV 620
+L ++ P Q ++L SATL+ V+ LA + NP ++++ T H + L
Sbjct: 179 RWL--FRRMPPANQRLNMLFSATLSYRVRELAFEHMNNPEYVEVEPEQKTG-HRIKEELF 235
Query: 621 IPDSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQD---------MAD 671
P K+RL L + I E+ + ++F T+ AD
Sbjct: 236 YPS--------NEEKMRL--LQTLI-------EEEWPDRAIIFANTKHRCEEIWGHLAAD 278
Query: 672 YHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDW 731
H L L G ++Q +R + + F +L+ TDVAARGL +P V
Sbjct: 279 GHRVGL------------LTGDVAQKKRLRILEEFTRGDLDILVATDVAARGLHIPAVTH 326
Query: 732 IVQYTAPSSSTDYVHRVGRTARVGHEGSSLLF 763
+ Y P DYVHR+GRT R G G S+
Sbjct: 327 VFNYDLPDDCEDYVHRIGRTGRAGASGHSISL 358
|
Length = 423 |
| >gnl|CDD|185609 PTZ00424, PTZ00424, helicase 45; Provisional | Back alignment and domain information |
|---|
Score = 143 bits (363), Expect = 5e-37
Identities = 100/374 (26%), Positives = 191/374 (51%), Gaps = 32/374 (8%)
Query: 416 TTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPT 475
+ +QQ I+PILDG D + ++Q+G+GKT + I +Q + + + A+I+ PT
Sbjct: 52 SAIQQRGIKPILDGYDTIGQAQSGTGKTATFVIAALQLID---YDL---NACQALILAPT 105
Query: 476 RELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHT 535
RELA Q ++ L + + GG ++ + +++ G+ ++V TPGR+ D
Sbjct: 106 RELAQQIQKVVLAL-GDYLKVRCHACVGGTVVRDDINKLKAGVHMVVGTPGRVYDMID-K 163
Query: 536 ETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAG 595
L+ ++ +LDEAD +L +G++ I ++ KK P Q L SAT+ + L
Sbjct: 164 RHLRVDDLKLFILDEADEMLSRGFKGQIY---DVFKKLPPDVQVALFSATMPNEILELTT 220
Query: 596 MTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFI-VTPPKLRLVALASFILGKCQNVNE 654
+++P +I D L + + ++Q ++ V + + L C
Sbjct: 221 KFMRDPKRILV--------KKDELTL-EGIRQFYVAVEKEEWKFDTL-------CDLYET 264
Query: 655 DEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSVKSGVL 714
++ +++ T+ DY T+ + + +HG M Q +R + + FRS + VL
Sbjct: 265 LTITQAIIYCNTRRKVDYLTKKMHE---RDFTVSCMHGDMDQKDRDLIMREFRSGSTRVL 321
Query: 715 ICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPSEVKLVEE 774
I TD+ ARG+D+ V ++ Y P+S +Y+HR+GR+ R G +G ++ F+ P +++ ++E
Sbjct: 322 ITTDLLARGIDVQQVSLVINYDLPASPENYIHRIGRSGRFGRKGVAINFVTPDDIEQLKE 381
Query: 775 LQNR-RIRIEEIKL 787
++ +IEE+ +
Sbjct: 382 IERHYNTQIEEMPM 395
|
Length = 401 |
| >gnl|CDD|214692 smart00487, DEXDc, DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Score = 131 bits (331), Expect = 8e-35
Identities = 62/181 (34%), Positives = 93/181 (51%), Gaps = 12/181 (6%)
Query: 1 MNITQVTTVQQLSIQPILDG-GDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIY 59
+ Q+ +I+ +L G DV++ + TGSGKTLA +P ++ L+ R G
Sbjct: 4 FGFEPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALK-------RGKGGR 56
Query: 60 AVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRL 119
++++PTRELA Q E KL S V G K + + ILV TPGRL
Sbjct: 57 VLVLVPTRELAEQWAEELKKLGPSLGLKVVGLYGGDSKREQLRKLESGKTDILVTTPGRL 116
Query: 120 LDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTP 179
LD ++ + L S V+ ++LDEA R+LD G+ + + L++L K Q +LLSAT
Sbjct: 117 LDLLEN-DKLSLSNVDLVILDEAHRLLDGGFGDQLEKLLKLLPKNV---QLLLLSATPPE 172
Query: 180 A 180
Sbjct: 173 E 173
|
Length = 201 |
| >gnl|CDD|238005 cd00046, DEXDc, DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Score = 123 bits (311), Expect = 9e-33
Identities = 59/156 (37%), Positives = 82/156 (52%), Gaps = 13/156 (8%)
Query: 22 DVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLC 81
DVL+ + TGSGKTLA +PI++ L G +++ PTRELA Q E +L
Sbjct: 2 DVLLAAPTGSGKTLAALLPILELLDS-------LKGGQVLVLAPTRELANQVAERLKELF 54
Query: 82 KSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDE 141
I +L GG +K ++ + I+V TPGRLLD L K++ L+LDE
Sbjct: 55 GEG--IKVGYLIGGTSIKQQEKLLSGKTDIVVGTPGRLLDE-LERLKLSLKKLDLLILDE 111
Query: 142 ADRILDQGYERDIAEFLEILKKQKPQFQSILLSATL 177
A R+L+QG+ L+IL K Q +LLSAT
Sbjct: 112 AHRLLNQGFGLLG---LKILLKLPKDRQVLLLSATP 144
|
A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region. Length = 144 |
| >gnl|CDD|238005 cd00046, DEXDc, DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Score = 123 bits (311), Expect = 9e-33
Identities = 59/156 (37%), Positives = 82/156 (52%), Gaps = 13/156 (8%)
Query: 431 DVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLC 490
DVL+ + TGSGKTLA +PI++ L G +++ PTRELA Q E +L
Sbjct: 2 DVLLAAPTGSGKTLAALLPILELLDS-------LKGGQVLVLAPTRELANQVAERLKELF 54
Query: 491 KSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDE 550
I +L GG +K ++ + I+V TPGRLLD L K++ L+LDE
Sbjct: 55 GEG--IKVGYLIGGTSIKQQEKLLSGKTDIVVGTPGRLLDE-LERLKLSLKKLDLLILDE 111
Query: 551 ADRILDQGYERDIAEFLEILKKQKPQFQSILLSATL 586
A R+L+QG+ L+IL K Q +LLSAT
Sbjct: 112 AHRLLNQGFGLLG---LKILLKLPKDRQVLLLSATP 144
|
A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region. Length = 144 |
| >gnl|CDD|236977 PRK11776, PRK11776, ATP-dependent RNA helicase DbpA; Provisional | Back alignment and domain information |
|---|
Score = 124 bits (315), Expect = 4e-30
Identities = 67/182 (36%), Positives = 100/182 (54%), Gaps = 22/182 (12%)
Query: 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYA 60
+ T++T +Q S+ IL G DV+ +++TGSGKT A+ + ++QKL R ++ A
Sbjct: 22 LGYTEMTPIQAQSLPAILAGKDVIAQAKTGSGKTAAFGLGLLQKLDVKRFRVQ------A 75
Query: 61 VIILPTRELALQ-TLEI-----FTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVA 114
+++ PTRELA Q EI F K T L GG M + + G I+V
Sbjct: 76 LVLCPTRELADQVAKEIRRLARFIPNIKVLT------LCGGVPMGPQIDSLEHGAHIIVG 129
Query: 115 TPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLS 174
TPGR+LDH + TL + LVLDEADR+LD G++ I I+++ + Q++L S
Sbjct: 130 TPGRILDHLRK-GTLDLDALNTLVLDEADRMLDMGFQDAID---AIIRQAPARRQTLLFS 185
Query: 175 AT 176
AT
Sbjct: 186 AT 187
|
Length = 460 |
| >gnl|CDD|238034 cd00079, HELICc, Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process | Back alignment and domain information |
|---|
Score = 115 bits (290), Expect = 4e-30
Identities = 47/137 (34%), Positives = 71/137 (51%), Gaps = 8/137 (5%)
Query: 627 QHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIA 686
+ +++ +L AL + + + K+L+F ++ M D ELL I
Sbjct: 3 KQYVLPVEDEKLEALLELL----KEHLKKGG-KVLIFCPSKKMLDELAELLR---KPGIK 54
Query: 687 FFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVH 746
LHG SQ ER EV K FR + VL+ TDV ARG+DLP V ++ Y P S + Y+
Sbjct: 55 VAALHGDGSQEEREEVLKDFREGEIVVLVATDVIARGIDLPNVSVVINYDLPWSPSSYLQ 114
Query: 747 RVGRTARVGHEGSSLLF 763
R+GR R G +G+++L
Sbjct: 115 RIGRAGRAGQKGTAILL 131
|
Length = 131 |
| >gnl|CDD|236722 PRK10590, PRK10590, ATP-dependent RNA helicase RhlE; Provisional | Back alignment and domain information |
|---|
Score = 124 bits (312), Expect = 6e-30
Identities = 67/172 (38%), Positives = 102/172 (59%), Gaps = 5/172 (2%)
Query: 7 TTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPT 66
T +QQ +I +L+G D++ +QTG+GKT + +P++Q L +P + + A+I+ PT
Sbjct: 25 TPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILTPT 84
Query: 67 RELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHT 126
RELA Q E K + I + GG + + ++R G+ +LVATPGRLLD +H
Sbjct: 85 RELAAQIGENVRDYSK-YLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLD-LEHQ 142
Query: 127 ETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLT 178
+K +VE LVLDEADR+LD G+ DI +L K + Q++L SAT +
Sbjct: 143 NAVKLDQVEILVLDEADRMLDMGFIHDIR---RVLAKLPAKRQNLLFSATFS 191
|
Length = 456 |
| >gnl|CDD|236877 PRK11192, PRK11192, ATP-dependent RNA helicase SrmB; Provisional | Back alignment and domain information |
|---|
Score = 114 bits (288), Expect = 6e-27
Identities = 70/172 (40%), Positives = 100/172 (58%), Gaps = 9/172 (5%)
Query: 7 TTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIIL-P 65
T +Q +I P LDG DVL + TG+GKT A+ +P +Q L + P+ RK G ++IL P
Sbjct: 25 TAIQAEAIPPALDGRDVLGSAPTGTGKTAAFLLPALQHLLDF-PR--RKSGPPRILILTP 81
Query: 66 TRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKH 125
TRELA+Q + +L K T + + +TGG + + I+VATPGRLL + K
Sbjct: 82 TRELAMQVADQARELAK-HTHLDIATITGGVAYMNHAEVFSENQDIVVATPGRLLQYIK- 139
Query: 126 TETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATL 177
E VE L+LDEADR+LD G+ +DI I + + + Q++L SATL
Sbjct: 140 EENFDCRAVETLILDEADRMLDMGFAQDIE---TIAAETRWRKQTLLFSATL 188
|
Length = 434 |
| >gnl|CDD|201125 pfam00271, Helicase_C, Helicase conserved C-terminal domain | Back alignment and domain information |
|---|
Score = 101 bits (254), Expect = 7e-26
Identities = 33/73 (45%), Positives = 46/73 (63%)
Query: 683 ENIAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSST 742
I +LHG +SQ ER E+ + FR+ KS VL+ TDVA RG+DLP V+ ++ Y P +
Sbjct: 6 PGIKVARLHGGLSQEEREEILEDFRNGKSKVLVATDVAGRGIDLPDVNLVINYDLPWNPA 65
Query: 743 DYVHRVGRTARVG 755
Y+ R+GR R G
Sbjct: 66 SYIQRIGRAGRAG 78
|
The Prosite family is restricted to DEAD/H helicases, whereas this domain family is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. Length = 78 |
| >gnl|CDD|236941 PRK11634, PRK11634, ATP-dependent RNA helicase DeaD; Provisional | Back alignment and domain information |
|---|
Score = 105 bits (264), Expect = 2e-23
Identities = 69/175 (39%), Positives = 99/175 (56%), Gaps = 16/175 (9%)
Query: 9 VQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQ-EMR-PKISRKDGIYAVIILPT 66
+Q I +L+G DVL +QTGSGKT A+++P++ L E++ P+I +++ PT
Sbjct: 32 IQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNLDPELKAPQI--------LVLAPT 83
Query: 67 RELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHT 126
RELA+Q E T K + L GG++ + +R+G I+V TPGRLLDH K
Sbjct: 84 RELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRG 143
Query: 127 ETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKP-QFQSILLSATLTPA 180
TL SK+ LVLDEAD +L G+ D+ E + Q P Q+ L SAT+ A
Sbjct: 144 -TLDLSKLSGLVLDEADEMLRMGFIEDV----ETIMAQIPEGHQTALFSATMPEA 193
|
Length = 629 |
| >gnl|CDD|197757 smart00490, HELICc, helicase superfamily c-terminal domain | Back alignment and domain information |
|---|
Score = 94.6 bits (236), Expect = 2e-23
Identities = 38/82 (46%), Positives = 49/82 (59%), Gaps = 1/82 (1%)
Query: 675 ELLSTVLGE-NIAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIV 733
E L+ +L E I +LHG +SQ ER E+ F + K VL+ TDVA RGLDLP VD ++
Sbjct: 1 EELAELLKELGIKVARLHGGLSQEEREEILDKFNNGKIKVLVATDVAERGLDLPGVDLVI 60
Query: 734 QYTAPSSSTDYVHRVGRTARVG 755
Y P S Y+ R+GR R G
Sbjct: 61 IYDLPWSPASYIQRIGRAGRAG 82
|
Length = 82 |
| >gnl|CDD|234938 PRK01297, PRK01297, ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Score = 103 bits (257), Expect = 6e-23
Identities = 68/178 (38%), Positives = 98/178 (55%), Gaps = 7/178 (3%)
Query: 4 TQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDG-IYAVI 62
T +Q + L G D + R+QTG+GKT A+ I II +L + P R G A+I
Sbjct: 108 PYCTPIQAQVLGYTLAGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEPRALI 167
Query: 63 ILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDH 122
I PTREL +Q + L K V +++ G + K K + ILVATPGRLLD
Sbjct: 168 IAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDF 227
Query: 123 CKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKK--QKPQFQSILLSATLT 178
+ E + VE +VLDEADR+LD G+ I + +I+++ +K + Q++L SAT T
Sbjct: 228 NQRGE-VHLDMVEVMVLDEADRMLDMGF---IPQVRQIIRQTPRKEERQTLLFSATFT 281
|
Length = 475 |
| >gnl|CDD|235307 PRK04537, PRK04537, ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Score = 101 bits (254), Expect = 2e-22
Identities = 61/181 (33%), Positives = 106/181 (58%), Gaps = 13/181 (7%)
Query: 4 TQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRK--DGIYAV 61
T+ T +Q L++ L GGDV ++QTG+GKTLA+ + ++ +L RP ++ + + A+
Sbjct: 30 TRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLS-RPALADRKPEDPRAL 88
Query: 62 IILPTRELALQ----TLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPG 117
I+ PTRELA+Q ++ L F + GG ++ +++G+ +++ATPG
Sbjct: 89 ILAPTRELAIQIHKDAVKFGADLGLRFALVY-----GGVDYDKQRELLQQGVDVIIATPG 143
Query: 118 RLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATL 177
RL+D+ K + + E VLDEADR+ D G+ +DI L + ++ + Q++L SATL
Sbjct: 144 RLIDYVKQHKVVSLHACEICVLDEADRMFDLGFIKDIRFLLRRMPERGTR-QTLLFSATL 202
Query: 178 T 178
+
Sbjct: 203 S 203
|
Length = 572 |
| >gnl|CDD|215103 PLN00206, PLN00206, DEAD-box ATP-dependent RNA helicase; Provisional | Back alignment and domain information |
|---|
Score = 100 bits (251), Expect = 5e-22
Identities = 62/179 (34%), Positives = 96/179 (53%), Gaps = 15/179 (8%)
Query: 7 TTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPK-ISRKDGIYAVIILP 65
T +Q +I L G +LV + TGSGKT ++ +PII + +R S + A+++ P
Sbjct: 145 TPIQMQAIPAALSGRSLLVSADTGSGKTASFLVPIISRCCTIRSGHPSEQRNPLAMVLTP 204
Query: 66 TRELALQTLEIFTKLCKSF---TWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLD- 121
TREL +Q + L K T +V GG+ M + RI++G+ ++V TPGRL+D
Sbjct: 205 TRELCVQVEDQAKVLGKGLPFKTALV----VGGDAMPQQLYRIQQGVELIVGTPGRLIDL 260
Query: 122 HCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPA 180
KH L V LVLDE D +L++G+ + + + L Q Q +L SAT++P
Sbjct: 261 LSKHDIEL--DNVSVLVLDEVDCMLERGFRDQVMQIFQAL----SQPQVLLFSATVSPE 313
|
Length = 518 |
| >gnl|CDD|240273 PTZ00110, PTZ00110, helicase; Provisional | Back alignment and domain information |
|---|
Score = 100 bits (251), Expect = 6e-22
Identities = 69/192 (35%), Positives = 106/192 (55%), Gaps = 18/192 (9%)
Query: 2 NITQVTTVQQLSIQ--PI-LDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGI 58
T+ T +Q +Q PI L G D++ ++TGSGKTLA+ +P I + +P + DG
Sbjct: 149 GFTEPTPIQ---VQGWPIALSGRDMIGIAETGSGKTLAFLLPAIVHINA-QPLLRYGDGP 204
Query: 59 YAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGR 118
+++ PTRELA Q E K S I + GG + + +R+G+ IL+A PGR
Sbjct: 205 IVLVLAPTRELAEQIREQCNKFGASSK-IRNTVAYGGVPKRGQIYALRRGVEILIACPGR 263
Query: 119 LLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLT 178
L+D + T +V +LVLDEADR+LD G+E I +I+ + +P Q+++ SAT
Sbjct: 264 LIDFLESNVT-NLRRVTYLVLDEADRMLDMGFEPQIR---KIVSQIRPDRQTLMWSAT-- 317
Query: 179 PATCWCKHTETL 190
W K ++L
Sbjct: 318 ----WPKEVQSL 325
|
Length = 545 |
| >gnl|CDD|224122 COG1201, Lhr, Lhr-like helicases [General function prediction only] | Back alignment and domain information |
|---|
Score = 97.7 bits (244), Expect = 9e-21
Identities = 102/443 (23%), Positives = 177/443 (39%), Gaps = 69/443 (15%)
Query: 393 EEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQ 452
E F + P +++ T +T Q+ +I I G +VL+ + TGSGKT A +P+I
Sbjct: 3 EIFNILDPRVREWFKR--KFTSLTPPQRYAIPEIHSGENVLIIAPTGSGKTEAAFLPVIN 60
Query: 453 KLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKA 512
+L K +DGIYA+ I P + L + + V G+ +SEK
Sbjct: 61 ELLS-LGKGKLEDGIYALYISPLKALNNDIRRRLEEPLRELGIEVAVR--HGDTPQSEKQ 117
Query: 513 RIRKGIS-ILVATPGRLLDHCKHTETL-----------KFSKVEHLVLDEADRILDQGYE 560
++ K IL+ TP E+L V ++++DE + + +
Sbjct: 118 KMLKNPPHILITTP----------ESLAILLNSPKFRELLRDVRYVIVDEIHALAES--K 165
Query: 561 R--DIAEFLEILKKQKPQFQSILLSATLTPA--VQR-LAGMTLQNPIQIDAADSTDIHNT 615
R +A LE L++ FQ I LSAT+ P V + L G
Sbjct: 166 RGVQLALSLERLRELAGDFQRIGLSATVGPPEEVAKFLVG------------------FG 207
Query: 616 TDSLVIPDSLKQH--FIVTPPKLRLVALASFILGKCQNVNE--DEESKMLVFMATQDMAD 671
++ S + V P L+ + + E + L+F T+ A+
Sbjct: 208 DPCEIVDVSAAKKLEIKVISPVEDLIYDEELWAALYERIAELVKKHRTTLIFTNTRSGAE 267
Query: 672 YHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDW 731
L + + I HGS+S+ R EV + + + ++ T G+D+ +D
Sbjct: 268 RLAFRLKKLGPDIIEVH--HGSLSRELRLEVEERLKEGELKAVVATSSLELGIDIGDIDL 325
Query: 732 IVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPSEV-KLVEEL----QNRRIRIEEIK 786
++Q +P S ++ R+GR E S +I + L+E L ++E IK
Sbjct: 326 VIQLGSPKSVNRFLQRIGRAGHRLGE-VSKGIIIAEDRDDLLECLVLADLALEGKLERIK 384
Query: 787 L-KDCL----QNLLSVKMEGDLS 804
+ K+ L Q ++ + +E
Sbjct: 385 IPKNPLDVLAQQIVGMALEKVWE 407
|
Length = 814 |
| >gnl|CDD|235314 PRK04837, PRK04837, ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Score = 87.7 bits (218), Expect = 3e-18
Identities = 56/186 (30%), Positives = 93/186 (50%), Gaps = 30/186 (16%)
Query: 7 TTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAI---------PIIQKLQEMRPKISRKDG 57
T +Q L++ L G DV ++QTG+GKT+A+ P + + +P+
Sbjct: 32 TPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVNQPR------ 85
Query: 58 IYAVIILPTRELALQT---LEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVA 114
A+I+ PTRELA+Q E + + GG+ + + G+ IL+
Sbjct: 86 --ALIMAPTRELAVQIHADAEPLAQATGLKLGLA----YGGDGYDKQLKVLESGVDILIG 139
Query: 115 TPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQ--SIL 172
T GRL+D+ K + ++ +VLDEADR+ D G+ +DI +L ++ P Q ++L
Sbjct: 140 TTGRLIDYAKQ-NHINLGAIQVVVLDEADRMFDLGFIKDI-RWL--FRRMPPANQRLNML 195
Query: 173 LSATLT 178
SATL+
Sbjct: 196 FSATLS 201
|
Length = 423 |
| >gnl|CDD|222474 pfam13959, DUF4217, Domain of unknown function (DUF4217) | Back alignment and domain information |
|---|
Score = 75.2 bits (186), Expect = 8e-17
Identities = 29/63 (46%), Positives = 39/63 (61%), Gaps = 2/63 (3%)
Query: 818 LQMSFESAVLQQKILHTSACKGYTSWVRFYASYSKDLRHIFNFKQIHLGHFAKSFALRDA 877
+Q+ E VL+ + L A K + S+VR YAS+S L+ IFN K++ LGH AKSF L
Sbjct: 2 IQLQLEKLVLKDRELKELAQKAFVSYVRAYASHS--LKSIFNVKKLDLGHLAKSFGLLRL 59
Query: 878 PSV 880
P V
Sbjct: 60 PKV 62
|
This short domain is found at the C-terminus of many helicase proteins. Length = 64 |
| >gnl|CDD|185609 PTZ00424, PTZ00424, helicase 45; Provisional | Back alignment and domain information |
|---|
Score = 83.0 bits (205), Expect = 1e-16
Identities = 52/171 (30%), Positives = 92/171 (53%), Gaps = 11/171 (6%)
Query: 7 TTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPT 66
+ +QQ I+PILDG D + ++Q+G+GKT + I +Q + + + A+I+ PT
Sbjct: 52 SAIQQRGIKPILDGYDTIGQAQSGTGKTATFVIAALQLID---YDL---NACQALILAPT 105
Query: 67 RELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHT 126
RELA Q ++ L + + GG ++ + +++ G+ ++V TPGR+ D
Sbjct: 106 RELAQQIQKVVLAL-GDYLKVRCHACVGGTVVRDDINKLKAGVHMVVGTPGRVYDMID-K 163
Query: 127 ETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATL 177
L+ ++ +LDEAD +L +G++ I ++ KK P Q L SAT+
Sbjct: 164 RHLRVDDLKLFILDEADEMLSRGFKGQIY---DVFKKLPPDVQVALFSATM 211
|
Length = 401 |
| >gnl|CDD|224126 COG1205, COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] | Back alignment and domain information |
|---|
Score = 72.1 bits (177), Expect = 8e-13
Identities = 78/384 (20%), Positives = 138/384 (35%), Gaps = 79/384 (20%)
Query: 422 SIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQ 481
+++ I +G +V+V + TGSGKT ++ +PI+ L +R +R A+++ PT LA
Sbjct: 78 ALRLIREGRNVVVTTGTGSGKTESFLLPILDHL--LRDPSAR-----ALLLYPTNALAND 130
Query: 482 TLEIFTKLCKSF-TWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLK- 539
E +L + TG + +A IR IL+ P L H L+
Sbjct: 131 QAERLRELISDLPGKVTFGRYTGDTPPEERRAIIRNPPDILLTNPDML-----HYLLLRN 185
Query: 540 -------FSKVEHLVLDEA---------------DRILDQGYERDIAEFLEILKKQKPQF 577
+++LV+DE R+ Q
Sbjct: 186 HDAWLWLLRNLKYLVVDELHTYRGVQGSEVALLLRRL------LRRLRRY----GSPLQI 235
Query: 578 QSILLSATL-TP--AVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQ--HFIVT 632
I SATL P + L G + P+ D + + V + + +
Sbjct: 236 --ICTSATLANPGEFAEELFGRDFEVPVDEDGSPRGLRY-----FVRREPPIRELAESIR 288
Query: 633 PPKLRLVA-LASFILGKCQNVNEDEESKMLVF-----MATQDMADYHTEL--LSTVLGEN 684
L +A LA+ ++ + LVF L L +
Sbjct: 289 RSALAELATLAALLV--------RNGIQTLVFFRSRKQVELLYLSPRRRLVREGGKLLDA 340
Query: 685 IAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSS-TD 743
++ + + + ER + F+ + +I T+ G+D+ +D ++ Y P S
Sbjct: 341 VSTY--RAGLHREERRRIEAEFKEGELLGVIATNALELGIDIGSLDAVIAYGYPGVSVLS 398
Query: 744 YVHRVGRTARVGHEGSSLLFLIPS 767
+ R GR R G E SL+ ++
Sbjct: 399 FRQRAGRAGRRGQE--SLVLVVLR 420
|
Length = 851 |
| >gnl|CDD|224122 COG1201, Lhr, Lhr-like helicases [General function prediction only] | Back alignment and domain information |
|---|
Score = 66.9 bits (164), Expect = 3e-11
Identities = 55/192 (28%), Positives = 86/192 (44%), Gaps = 29/192 (15%)
Query: 2 NITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAV 61
T +T Q+ +I I G +VL+ + TGSGKT A +P+I +L K +DGIYA+
Sbjct: 19 KFTSLTPPQRYAIPEIHSGENVLIIAPTGSGKTEAAFLPVINELLS-LGKGKLEDGIYAL 77
Query: 62 IILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGIS-ILVATPGRLL 120
I P + L + + V G+ +SEK ++ K IL+ TP
Sbjct: 78 YISPLKALNNDIRRRLEEPLRELGIEVAVR--HGDTPQSEKQKMLKNPPHILITTP---- 131
Query: 121 DHCKHTETL-----------KFSKVEHLVLDEADRILDQGYER--DIAEFLEILKKQKPQ 167
E+L V ++++DE + + +R +A LE L++
Sbjct: 132 ------ESLAILLNSPKFRELLRDVRYVIVDEIHALAES--KRGVQLALSLERLRELAGD 183
Query: 168 FQSILLSATLTP 179
FQ I LSAT+ P
Sbjct: 184 FQRIGLSATVGP 195
|
Length = 814 |
| >gnl|CDD|129701 TIGR00614, recQ_fam, ATP-dependent DNA helicase, RecQ family | Back alignment and domain information |
|---|
Score = 66.7 bits (163), Expect = 3e-11
Identities = 92/387 (23%), Positives = 155/387 (40%), Gaps = 59/387 (15%)
Query: 417 TVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTR 476
VQ I +L G D V TG GK+L Y +P S DGI ++I P
Sbjct: 14 PVQLEVINAVLLGRDCFVVMPTGGGKSLCYQLP---------ALCS--DGI-TLVISPLI 61
Query: 477 EL---ALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKG-----ISILVATPGRL 528
L + L+ +P+ + K ++ + I +L TP +
Sbjct: 62 SLMEDQVLQLKASG---------IPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKC 112
Query: 529 LDHCKHTETLK-FSKVEHLVLDEADRILDQGYE-RDIAEFLEILKKQKPQFQSILLSATL 586
+ +TL+ + + +DEA I G++ R + L LK++ P + L+AT
Sbjct: 113 SASNRLLQTLEERKGITLIAVDEAHCISQWGHDFRPDYKALGSLKQKFPNVPIMALTATA 172
Query: 587 TPAVQR--LAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALASF 644
+P+V+ L + L+NP QI S D N L PK+ L L F
Sbjct: 173 SPSVREDILRQLNLKNP-QIFCT-SFDRPN----------LYYEVRRKTPKI-LEDLLRF 219
Query: 645 ILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFK 704
I E + +++ ++ ++ T L IA H + S R +V
Sbjct: 220 IRK------EFKGKSGIIYCPSRKKSEQVTASLQN---LGIAAGAYHAGLEISARDDVHH 270
Query: 705 TFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFL 764
F+ + V++ T G++ P V +++ Y+ P S Y GR R G LF
Sbjct: 271 KFQRDEIQVVVATVAFGMGINKPDVRFVIHYSLPKSMESYYQESGRAGRDGLPSECHLFY 330
Query: 765 IPSEV----KLVEELQNRRIRIEEIKL 787
P+++ +L+ E + + R ++KL
Sbjct: 331 APADINRLRRLLMEEPDGQQRTYKLKL 357
|
All proteins in this family for which functions are known are 3'-5' DNA-DNA helicases. These proteins are used for recombination, recombinational repair, and possibly maintenance of chromosome stability. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 470 |
| >gnl|CDD|223588 COG0514, RecQ, Superfamily II DNA helicase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 66.6 bits (163), Expect = 4e-11
Identities = 86/403 (21%), Positives = 147/403 (36%), Gaps = 79/403 (19%)
Query: 419 QQLSIQPILDGGDVLVRSQTGSGKTLAYAIP-IIQKLQEMRPKISRKDGIYAVIILPTRE 477
QQ I +L G D LV TG GK+L Y IP ++ +G+ +++ P
Sbjct: 22 QQEIIDALLSGKDTLVVMPTGGGKSLCYQIPALLL------------EGL-TLVVSPL-- 66
Query: 478 LAL-----QTLEIF----TKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRL 528
++L LE L + L+ E+ + + +L +P RL
Sbjct: 67 ISLMKDQVDQLEAAGIRAAYLNST--------LSREERQQVLNQLKSGQLKLLYISPERL 118
Query: 529 L-DHCKHTETLKFSKVEHLVLDEADRILDQG------YERDIAEFLEILKKQKPQFQSIL 581
+ E LK + + +DEA I G Y R L L+ P +
Sbjct: 119 MSPRFL--ELLKRLPISLVAIDEAHCISQWGHDFRPDYRR-----LGRLRAGLPNPPVLA 171
Query: 582 LSATLTPAVQR--LAGMTLQNP-IQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRL 638
L+AT TP V+ + LQ+ I + D ++ P +L
Sbjct: 172 LTATATPRVRDDIREQLGLQDANIFRGSFDRPNLALK------------VVEKGEPSDQL 219
Query: 639 VALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSE 698
L V +++ T+ + E L G + + H +S E
Sbjct: 220 AFL--------ATVLPQLSKSGIIYCLTRKKVEELAEWLRKN-GISAGAY--HAGLSNEE 268
Query: 699 RTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEG 758
R V + F + + V++ T+ G+D P V +++ Y P S Y GR R G
Sbjct: 269 RERVQQAFLNDEIKVMVATNAFGMGIDKPDVRFVIHYDLPGSIESYYQETGRAGRDGLPA 328
Query: 759 SSLLFLIPSEVKLVEELQNRRIRIEEIKLKDCLQNLLSVKMEG 801
++L P +++ +R IE+ K + + + K+
Sbjct: 329 EAILLYSPEDIRW------QRYLIEQSKPDEEQKQIELAKLRQ 365
|
Length = 590 |
| >gnl|CDD|214692 smart00487, DEXDc, DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Score = 57.9 bits (140), Expect = 2e-09
Identities = 25/68 (36%), Positives = 40/68 (58%), Gaps = 3/68 (4%)
Query: 190 LKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLTPAVQRLAGMT 249
L S V+ ++LDEA R+LD G+ + + L++L K Q +LLSAT ++ L +
Sbjct: 125 LSLSNVDLVILDEAHRLLDGGFGDQLEKLLKLLPKNV---QLLLLSATPPEEIENLLELF 181
Query: 250 LQNPIQID 257
L +P+ ID
Sbjct: 182 LNDPVFID 189
|
Length = 201 |
| >gnl|CDD|224036 COG1111, MPH1, ERCC4-like helicases [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 61.2 bits (149), Expect = 2e-09
Identities = 37/130 (28%), Positives = 55/130 (42%), Gaps = 13/130 (10%)
Query: 631 VTPPKLRLVALASFILGKCQNVNEDE-ESKMLVFMATQDMADYHTELLSTVLGENIAFFK 689
V PKL + + E +S+++VF +D A+ L + + F
Sbjct: 345 VEHPKLEKL------REILKEQLEKNGDSRVIVFTEYRDTAEEIVNFLKKIGIKARVRFI 398
Query: 690 LHGS------MSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTD 743
S MSQ E+ E+ FR + VL+ T V GLD+P VD ++ Y S
Sbjct: 399 GQASREGDKGMSQKEQKEIIDQFRKGEYNVLVATSVGEEGLDIPEVDLVIFYEPVPSEIR 458
Query: 744 YVHRVGRTAR 753
+ R GRT R
Sbjct: 459 SIQRKGRTGR 468
|
Length = 542 |
| >gnl|CDD|130456 TIGR01389, recQ, ATP-dependent DNA helicase RecQ | Back alignment and domain information |
|---|
Score = 60.1 bits (146), Expect = 4e-09
Identities = 81/398 (20%), Positives = 151/398 (37%), Gaps = 77/398 (19%)
Query: 419 QQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTREL 478
Q+ I +LDG DVLV TG GK+L Y +P + + + V+I P L
Sbjct: 18 QEEIISHVLDGRDVLVVMPTGGGKSLCYQVPAL-----LLKGL-------TVVISPLISL 65
Query: 479 ------ALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRL---- 528
L+ + + S L+ E+ EKA + + +L P RL
Sbjct: 66 MKDQVDQLRAAGVAAAY-------LNSTLSAKEQQDIEKALVNGELKLLYVAPERLEQDY 118
Query: 529 -LDHCKHTETLKFSKVEHLVLDEADRILDQGYE-----RDIAEFLEILKKQKPQFQSILL 582
L+ + + + +DEA + G++ + + E PQ I L
Sbjct: 119 FLNMLQRI------PIALVAVDEAHCVSQWGHDFRPEYQRLGSLAERF----PQVPRIAL 168
Query: 583 SATLTPAVQR--LAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLVA 640
+AT ++ + L + + S D N S V+ + KQ F++
Sbjct: 169 TATADAETRQDIRELLRLADANEF--ITSFDRPNLRFS-VVKKNNKQKFLL--------- 216
Query: 641 LASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERT 700
++ +S +++ +++ + E L + + I+ H +S R
Sbjct: 217 --DYL------KKHRGQSG-IIYASSRKKVEELAERLES---QGISALAYHAGLSNKVRA 264
Query: 701 EVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSS 760
E + F V++ T+ G+D P V +++ Y P + Y GR R G +
Sbjct: 265 ENQEDFLYDDVKVMVATNAFGMGIDKPNVRFVIHYDMPGNLESYYQEAGRAGRDGLPAEA 324
Query: 761 LLFLIPSEVKLVEEL------QNRRIRIEEIKLKDCLQ 792
+L P+++ L++ + +IE KL+ +
Sbjct: 325 ILLYSPADIALLKRRIEQSEADDDYKQIEREKLRAMIA 362
|
The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ [DNA metabolism, DNA replication, recombination, and repair]. Length = 591 |
| >gnl|CDD|215832 pfam00270, DEAD, DEAD/DEAH box helicase | Back alignment and domain information |
|---|
Score = 55.7 bits (135), Expect = 8e-09
Identities = 32/95 (33%), Positives = 45/95 (47%), Gaps = 11/95 (11%)
Query: 153 DIAEFLEILKKQKPQFQSILLSATLTPATCW--CKHTETLKFSKVEHLVLDEADRILDQG 210
+ E LKK K IL+ TP + + ++ LVLDEA R+LD G
Sbjct: 84 SLKEQARKLKKGKAD---ILVG---TPGRLLDLLRRGKLKLLKNLKLLVLDEAHRLLDMG 137
Query: 211 YERDIAEFLEILKKQKPQFQSVLLSATLTPAVQRL 245
+ D+ EIL + P Q +LLSATL ++ L
Sbjct: 138 FGDDLE---EILSRLPPDRQILLLSATLPRNLEDL 169
|
Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. Length = 169 |
| >gnl|CDD|240273 PTZ00110, PTZ00110, helicase; Provisional | Back alignment and domain information |
|---|
Score = 55.9 bits (135), Expect = 6e-08
Identities = 42/140 (30%), Positives = 68/140 (48%), Gaps = 21/140 (15%)
Query: 193 SKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLTPAVQRLA-GMTLQ 251
+V +LVLDEADR+LD G+E I +I+ + +P Q+++ SAT VQ LA + +
Sbjct: 276 RRVTYLVLDEADRMLDMGFEPQIR---KIVSQIRPDRQTLMWSATWPKEVQSLARDLCKE 332
Query: 252 NPIQID--AADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEE 309
P+ ++ + D T HN +KQ V + L L +
Sbjct: 333 EPVHVNVGSLDLTACHN----------IKQEVFVVEEHEKRGKLKML-LQRIMRDG---- 377
Query: 310 SKMLVFMATQDMADYHTELL 329
K+L+F+ T+ AD+ T+ L
Sbjct: 378 DKILIFVETKKGADFLTKEL 397
|
Length = 545 |
| >gnl|CDD|223989 COG1061, SSL2, DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 52.8 bits (127), Expect = 5e-07
Identities = 77/387 (19%), Positives = 129/387 (33%), Gaps = 70/387 (18%)
Query: 429 GGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIIL-PTRELALQTLEIFT 487
++ TG+GKT+ A I +L+ ++L PT+EL Q E
Sbjct: 55 ERRGVIVLPTGAGKTVV-AAEAIAELKRS------------TLVLVPTKELLDQWAEALK 101
Query: 488 KLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEH-- 545
K I GGEK + E A++ VAT + + +F E
Sbjct: 102 KFLLLNDEI--GIYGGGEK-ELEPAKV------TVAT---VQTLARRQLLDEFLGNEFGL 149
Query: 546 LVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQ------ 599
++ DE + Y R I E L + + L+AT G
Sbjct: 150 IIFDEVHHLPAPSY-RRILELL------SAAYPRLGLTATPEREDGGRIGDLFDLIGPIV 202
Query: 600 -------------------NPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPP-KLRLV 639
I++ + + +S + L+ + + R +
Sbjct: 203 YEVSLKELIDEGYLAPYKYVEIKVTLTEDEEREYAKESARFRELLRARGTLRAENEARRI 262
Query: 640 ALAS---FILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQ 696
A+AS + + K L+F + + A +L + G +
Sbjct: 263 AIASERKIAAVRGLLLKHARGDKTLIFASDVEHAYEIAKLFLAPGIVEA----ITGETPK 318
Query: 697 SERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTAR--V 754
ER + + FR+ VL+ V G+D+P D ++ S ++ R+GR R
Sbjct: 319 EEREAILERFRTGGIKVLVTVKVLDEGVDIPDADVLIILRPTGSRRLFIQRLGRGLRPAE 378
Query: 755 GHEGSSLLFLIPSEVKLVEELQNRRIR 781
G E + L L EE RR R
Sbjct: 379 GKEDTLALDYSLVPDDLGEEDIARRRR 405
|
Length = 442 |
| >gnl|CDD|224125 COG1204, COG1204, Superfamily II helicase [General function prediction only] | Back alignment and domain information |
|---|
Score = 53.2 bits (128), Expect = 5e-07
Identities = 76/345 (22%), Positives = 127/345 (36%), Gaps = 59/345 (17%)
Query: 419 QQLSIQP-ILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRE 477
QQ +++ +L +VL+ + TGSGKTL + I+ L E K+ +Y V P +
Sbjct: 36 QQEAVEKGLLSDENVLISAPTGSGKTLIALLAILSTLLEGGGKV-----VYIV---PLKA 87
Query: 478 LALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTET 537
LA + E F++L I TG + R+ ++V TP + LD
Sbjct: 88 LAEEKYEEFSRL--EELGIRVGISTGD--YDLDDERL-ARYDVIVTTPEK-LDSLTRKRP 141
Query: 538 LKFSKVEHLVLDEADRILDQGYERDIAEFLEI----LKKQKPQFQSILLSATL------- 586
+V+ +V+DE + D R LE +++ + + LSATL
Sbjct: 142 SWIEEVDLVVIDEIHLLGD--RTRG--PVLESIVARMRRLNELIRIVGLSATLPNAEEVA 197
Query: 587 --------------------TPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLK 626
P V G + D+ + +SL
Sbjct: 198 DWLNAKLVESDWRPVPLRRGVPYVGAFLGADGKKKTWPLLIDNLALELVLESL---AEGG 254
Query: 627 QHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMAT----QDMADYHTELLSTVLG 682
Q + + A + K D+E +L A+ + E L+ ++
Sbjct: 255 QVLVFVHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEELAELVL 314
Query: 683 ENIAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLP 727
+AF H + + +R V FR K VL+ T A G++LP
Sbjct: 315 RGVAFH--HAGLPREDRQLVEDAFRKGKIKVLVSTPTLAAGVNLP 357
|
Length = 766 |
| >gnl|CDD|224126 COG1205, COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] | Back alignment and domain information |
|---|
Score = 52.8 bits (127), Expect = 7e-07
Identities = 44/189 (23%), Positives = 71/189 (37%), Gaps = 48/189 (25%)
Query: 13 SIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQ 72
+++ I +G +V+V + TGSGKT ++ +PI+ L +R +R A+++ PT LA
Sbjct: 78 ALRLIREGRNVVVTTGTGSGKTESFLLPILDHL--LRDPSAR-----ALLLYPTNALAND 130
Query: 73 TLEIFTKLCKSF-TWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLK- 130
E +L + TG + +A IR IL+ P L H L+
Sbjct: 131 QAERLRELISDLPGKVTFGRYTGDTPPEERRAIIRNPPDILLTNPDML-----HYLLLRN 185
Query: 131 -------FSKVEHLVLDEA---------------DRILDQGYERDIAEFLEILKKQKPQF 168
+++LV+DE R+ Q
Sbjct: 186 HDAWLWLLRNLKYLVVDELHTYRGVQGSEVALLLRRL------LRRLRRY----GSPLQI 235
Query: 169 QSILLSATL 177
I SATL
Sbjct: 236 --ICTSATL 242
|
Length = 851 |
| >gnl|CDD|238005 cd00046, DEXDc, DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Score = 48.5 bits (116), Expect = 1e-06
Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Query: 185 KHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATL 238
L K++ L+LDEA R+L+QG+ L+IL K Q +LLSAT
Sbjct: 94 LERLKLSLKKLDLLILDEAHRLLNQGFGLLG---LKILLKLPKDRQVLLLSATP 144
|
A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region. Length = 144 |
| >gnl|CDD|237497 PRK13767, PRK13767, ATP-dependent helicase; Provisional | Back alignment and domain information |
|---|
Score = 51.8 bits (125), Expect = 1e-06
Identities = 54/197 (27%), Positives = 90/197 (45%), Gaps = 35/197 (17%)
Query: 7 TTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPT 66
T Q+ +I I +G +VL+ S TGSGKTLA + II +L + + +D +Y + + P
Sbjct: 34 TPPQRYAIPLIHEGKNVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCLYVSPL 93
Query: 67 RELA-------LQTL----EIFTKLCKSFTWIVPSWLTGGEKMKSEKAR-IRKGISILVA 114
R L + L EI + + I + T G+ EK + ++K IL+
Sbjct: 94 RALNNDIHRNLEEPLTEIREIAKERGEELPEIRVAIRT-GDTSSYEKQKMLKKPPHILIT 152
Query: 115 TPGRLLDHCKHTETL-------KFSK----VEHLVLDEADRILDQGYERDIAEFLEILKK 163
TP E+L KF + V+ +++DE + + ++ LE L++
Sbjct: 153 TP----------ESLAILLNSPKFREKLRTVKWVIVDEIHSLAENKRGVHLSLSLERLEE 202
Query: 164 -QKPQFQSILLSATLTP 179
+F I LSAT+ P
Sbjct: 203 LAGGEFVRIGLSATIEP 219
|
Length = 876 |
| >gnl|CDD|237497 PRK13767, PRK13767, ATP-dependent helicase; Provisional | Back alignment and domain information |
|---|
Score = 51.8 bits (125), Expect = 1e-06
Identities = 54/197 (27%), Positives = 90/197 (45%), Gaps = 35/197 (17%)
Query: 416 TTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPT 475
T Q+ +I I +G +VL+ S TGSGKTLA + II +L + + +D +Y + + P
Sbjct: 34 TPPQRYAIPLIHEGKNVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCLYVSPL 93
Query: 476 RELA-------LQTL----EIFTKLCKSFTWIVPSWLTGGEKMKSEKAR-IRKGISILVA 523
R L + L EI + + I + T G+ EK + ++K IL+
Sbjct: 94 RALNNDIHRNLEEPLTEIREIAKERGEELPEIRVAIRT-GDTSSYEKQKMLKKPPHILIT 152
Query: 524 TPGRLLDHCKHTETL-------KFSK----VEHLVLDEADRILDQGYERDIAEFLEILKK 572
TP E+L KF + V+ +++DE + + ++ LE L++
Sbjct: 153 TP----------ESLAILLNSPKFREKLRTVKWVIVDEIHSLAENKRGVHLSLSLERLEE 202
Query: 573 -QKPQFQSILLSATLTP 588
+F I LSAT+ P
Sbjct: 203 LAGGEFVRIGLSATIEP 219
|
Length = 876 |
| >gnl|CDD|224125 COG1204, COG1204, Superfamily II helicase [General function prediction only] | Back alignment and domain information |
|---|
Score = 51.6 bits (124), Expect = 2e-06
Identities = 46/173 (26%), Positives = 76/173 (43%), Gaps = 23/173 (13%)
Query: 10 QQLSIQP-ILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRE 68
QQ +++ +L +VL+ + TGSGKTL + I+ L E K+ +Y V P +
Sbjct: 36 QQEAVEKGLLSDENVLISAPTGSGKTLIALLAILSTLLEGGGKV-----VYIV---PLKA 87
Query: 69 LALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTET 128
LA + E F++L I TG + R+ ++V TP + LD
Sbjct: 88 LAEEKYEEFSRL--EELGIRVGISTGD--YDLDDERL-ARYDVIVTTPEK-LDSLTRKRP 141
Query: 129 LKFSKVEHLVLDEADRILDQGYERDIAEFLEI----LKKQKPQFQSILLSATL 177
+V+ +V+DE + D R LE +++ + + LSATL
Sbjct: 142 SWIEEVDLVVIDEIHLLGD--RTRG--PVLESIVARMRRLNELIRIVGLSATL 190
|
Length = 766 |
| >gnl|CDD|237496 PRK13766, PRK13766, Hef nuclease; Provisional | Back alignment and domain information |
|---|
Score = 50.6 bits (122), Expect = 3e-06
Identities = 44/134 (32%), Positives = 64/134 (47%), Gaps = 19/134 (14%)
Query: 634 PKL-RLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHG 692
PKL +L + LGK + +S+++VF +D A+ +LL E I + G
Sbjct: 347 PKLEKLREIVKEQLGK------NPDSRIIVFTQYRDTAEKIVDLLE---KEGIKAVRFVG 397
Query: 693 S--------MSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDY 744
MSQ E+ E+ FR+ + VL+ T VA GLD+P VD ++ Y S
Sbjct: 398 QASKDGDKGMSQKEQIEILDKFRAGEFNVLVSTSVAEEGLDIPSVDLVIFYEPVPSEIRS 457
Query: 745 VHRVGRTARVGHEG 758
+ R GRT R EG
Sbjct: 458 IQRKGRTGR-QEEG 470
|
Length = 773 |
| >gnl|CDD|234478 TIGR04121, DEXH_lig_assoc, DEXH box helicase, DNA ligase-associated | Back alignment and domain information |
|---|
Score = 49.5 bits (119), Expect = 7e-06
Identities = 94/373 (25%), Positives = 150/373 (40%), Gaps = 59/373 (15%)
Query: 419 QQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTREL 478
Q L+G L+ + TGSGKTLA +P L ++ K G++ + I P R L
Sbjct: 18 QLEMWAAALEGRSGLLIAPTGSGKTLAGFLPS---LIDLAGPEKPKKGLHTLYITPLRAL 74
Query: 479 ALQTLEIFTKLCKSFTWIVPSWLTG---GEKMKSEKARIRKGI-SILVATPGRL---LDH 531
A ++I L + G+ SE+AR RK IL+ TP L L +
Sbjct: 75 A---VDIARNLQAPIEELGLPIRVETRTGDTSSSERARQRKKPPDILLTTPESLALLLSY 131
Query: 532 CKHTETLKFSKVEHLVLDEADRILDQGYER-DIAEF-LEILKKQKPQFQSILLSAT---L 586
L F + +V+DE + G +R D E L L++ P + LSAT L
Sbjct: 132 -PDAARL-FKDLRCVVVDEWHELA--GSKRGDQLELALARLRRLAPGLRRWGLSATIGNL 187
Query: 587 TPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPP-----KLRLVAL 641
A + L G+ + + I + ++P+S + P LR +
Sbjct: 188 EEARRVLLGVGGAPAVLVRGKLPKAIPVIS---LLPESEE-----RFPWAGHLGLRALP- 238
Query: 642 ASFILGKCQNVNEDEESKM-LVFMATQDMADYHTELLSTVLGEN---IAFFKLHGSMSQS 697
+ E ++++ LVF T+ A+ + L E IA HGS+ +
Sbjct: 239 --------EVYAEIDQARTTLVFTNTRSQAELWFQALWEANPEFALPIALH--HGSLDRE 288
Query: 698 ERTEVFKTFRSVKSGVL---ICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTA-R 753
+R ++ +G L +CT G+D VD ++Q +P + R GR+ R
Sbjct: 289 QR---RWVEAAMAAGRLRAVVCTSSLDLGVDFGPVDLVIQIGSPKGVARLLQRAGRSNHR 345
Query: 754 VGHEGSSLLFLIP 766
G S L+P
Sbjct: 346 PG--EPSRALLVP 356
|
Members of this protein family are DEAD/DEAH box helicases found associated with a bacterial ATP-dependent DNA ligase, part of a four-gene system that occurs in about 12 % of prokaryotic reference genomes. The actual motif in this family is DE[VILW]H. Length = 803 |
| >gnl|CDD|137505 PRK09751, PRK09751, putative ATP-dependent helicase Lhr; Provisional | Back alignment and domain information |
|---|
Score = 46.5 bits (110), Expect = 7e-05
Identities = 32/100 (32%), Positives = 49/100 (49%), Gaps = 14/100 (14%)
Query: 691 HGSMSQSERTEVFKTFRSVKSGVLIC---TDVAARGLDLPLVDWIVQYTAPSSSTDYVHR 747
HGS+S+ +R T +++KSG L C T G+D+ VD ++Q P S + R
Sbjct: 308 HGSVSKEQRAI---TEQALKSGELRCVVATSSLELGIDMGAVDLVIQVATPLSVASGLQR 364
Query: 748 VGRTA-RVGHEGSSLLF------LIPSEVKLVEELQNRRI 780
+GR +VG L F L+ S V +VE + R+
Sbjct: 365 IGRAGHQVGGVSKGLFFPRTRRDLVDSAV-IVECMFAGRL 403
|
Length = 1490 |
| >gnl|CDD|234938 PRK01297, PRK01297, ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Score = 44.5 bits (105), Expect = 2e-04
Identities = 25/65 (38%), Positives = 40/65 (61%), Gaps = 5/65 (7%)
Query: 195 VEHLVLDEADRILDQGYERDIAEFLEILKK--QKPQFQSVLLSATLTPAVQRLAGMTLQN 252
VE +VLDEADR+LD G+ I + +I+++ +K + Q++L SAT T V LA +
Sbjct: 238 VEVMVLDEADRMLDMGF---IPQVRQIIRQTPRKEERQTLLFSATFTDDVMNLAKQWTTD 294
Query: 253 PIQID 257
P ++
Sbjct: 295 PAIVE 299
|
Length = 475 |
| >gnl|CDD|233069 TIGR00643, recG, ATP-dependent DNA helicase RecG | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 8e-04
Identities = 82/355 (23%), Positives = 135/355 (38%), Gaps = 78/355 (21%)
Query: 430 GDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKL 489
GDV GSGKTL A+ ++ ++ G ++ PT LA Q L
Sbjct: 263 GDV------GSGKTLVAALAMLAAIEA---------GYQVALMAPTEILAEQHYNSLRNL 307
Query: 490 CKSFTWIVPSWLTGGEKMKSEK---ARIRKG-ISILVATPGRLLDHCKHTETLKFSKVEH 545
V + LTG K K K I G I ++V T H E ++F ++
Sbjct: 308 LAPLGIEV-ALLTGSLKGKRRKELLETIASGQIHLVVGT------HALIQEKVEFKRLAL 360
Query: 546 LVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQID 605
+++DE R G E+ ++ +K + F +L + TP + LA +T+ +
Sbjct: 361 VIIDEQHRF---GVEQR----KKLREKGQGGFTPHVLVMSATPIPRTLA-LTVYGDLDTS 412
Query: 606 AADS---------TDIHNTTD-----SLVIPDSLK--QHFIVTPPKLRLVALASFILGKC 649
D T + + + + K Q ++V P L+
Sbjct: 413 IIDELPPGRKPITTVLIKHDEKDIVYEFIEEEIAKGRQAYVVYP----LI---------- 458
Query: 650 QNVNEDEESKMLVFMATQDMADYHTELLSTVLGE-NIAFFKLHGSMSQSERTEVFKTFRS 708
EES+ L A + + + L + N+ LHG M E+ V + FR
Sbjct: 459 ------EESEKLDLKAAEALYER----LKKAFPKYNVGL--LHGRMKSDEKEAVMEEFRE 506
Query: 709 VKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRV-GRTARVGHEGSSLL 762
+ +L+ T V G+D+P +V A +H++ GR R H+ LL
Sbjct: 507 GEVDILVATTVIEVGVDVPNATVMVIEDAERFGLSQLHQLRGRVGRGDHQSYCLL 561
|
[DNA metabolism, DNA replication, recombination, and repair]. Length = 630 |
| >gnl|CDD|236941 PRK11634, PRK11634, ATP-dependent RNA helicase DeaD; Provisional | Back alignment and domain information |
|---|
Score = 42.1 bits (99), Expect = 0.001
Identities = 29/81 (35%), Positives = 41/81 (50%), Gaps = 9/81 (11%)
Query: 189 TLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKP-QFQSVLLSATLTPAVQRLAG 247
TL SK+ LVLDEAD +L G+ D+ E + Q P Q+ L SAT+ A++R+
Sbjct: 144 TLDLSKLSGLVLDEADEMLRMGFIEDV----ETIMAQIPEGHQTALFSATMPEAIRRITR 199
Query: 248 MTLQNP----IQIDAADSTDI 264
++ P IQ DI
Sbjct: 200 RFMKEPQEVRIQSSVTTRPDI 220
|
Length = 629 |
| >gnl|CDD|235314 PRK04837, PRK04837, ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 0.002
Identities = 28/87 (32%), Positives = 47/87 (54%), Gaps = 8/87 (9%)
Query: 192 FSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQ--SVLLSATLTPAVQRLAGMT 249
++ +VLDEADR+ D G+ +DI +L ++ P Q ++L SATL+ V+ LA
Sbjct: 155 LGAIQVVVLDEADRMFDLGFIKDI-RWL--FRRMPPANQRLNMLFSATLSYRVRELAFEH 211
Query: 250 LQNP--IQIDAADSTDIHNTTDSLVIP 274
+ NP ++++ T H + L P
Sbjct: 212 MNNPEYVEVEPEQKTG-HRIKEELFYP 237
|
Length = 423 |
| >gnl|CDD|129701 TIGR00614, recQ_fam, ATP-dependent DNA helicase, RecQ family | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 0.003
Identities = 44/184 (23%), Positives = 74/184 (40%), Gaps = 31/184 (16%)
Query: 8 TVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTR 67
VQ I +L G D V TG GK+L Y +P S DGI ++I P
Sbjct: 14 PVQLEVINAVLLGRDCFVVMPTGGGKSLCYQLP---------ALCS--DGI-TLVISPLI 61
Query: 68 EL---ALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKG-----ISILVATPGRL 119
L + L+ +P+ + K ++ + I +L TP +
Sbjct: 62 SLMEDQVLQLKASG---------IPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKC 112
Query: 120 LDHCKHTETLK-FSKVEHLVLDEADRILDQGYE-RDIAEFLEILKKQKPQFQSILLSATL 177
+ +TL+ + + +DEA I G++ R + L LK++ P + L+AT
Sbjct: 113 SASNRLLQTLEERKGITLIAVDEAHCISQWGHDFRPDYKALGSLKQKFPNVPIMALTATA 172
Query: 178 TPAT 181
+P+
Sbjct: 173 SPSV 176
|
All proteins in this family for which functions are known are 3'-5' DNA-DNA helicases. These proteins are used for recombination, recombinational repair, and possibly maintenance of chromosome stability. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 470 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 930 | |||
| KOG0348|consensus | 708 | 100.0 | ||
| KOG0345|consensus | 567 | 100.0 | ||
| KOG0342|consensus | 543 | 100.0 | ||
| KOG0343|consensus | 758 | 100.0 | ||
| KOG0330|consensus | 476 | 100.0 | ||
| KOG0331|consensus | 519 | 100.0 | ||
| KOG0338|consensus | 691 | 100.0 | ||
| KOG0340|consensus | 442 | 100.0 | ||
| COG0513 | 513 | SrmB Superfamily II DNA and RNA helicases [DNA rep | 100.0 | |
| KOG0333|consensus | 673 | 100.0 | ||
| KOG0328|consensus | 400 | 100.0 | ||
| KOG0336|consensus | 629 | 100.0 | ||
| KOG0346|consensus | 569 | 100.0 | ||
| PRK04837 | 423 | ATP-dependent RNA helicase RhlB; Provisional | 100.0 | |
| PTZ00110 | 545 | helicase; Provisional | 100.0 | |
| KOG0326|consensus | 459 | 100.0 | ||
| PRK11776 | 460 | ATP-dependent RNA helicase DbpA; Provisional | 100.0 | |
| PRK10590 | 456 | ATP-dependent RNA helicase RhlE; Provisional | 100.0 | |
| PLN00206 | 518 | DEAD-box ATP-dependent RNA helicase; Provisional | 100.0 | |
| PRK11634 | 629 | ATP-dependent RNA helicase DeaD; Provisional | 100.0 | |
| KOG0347|consensus | 731 | 100.0 | ||
| PRK04537 | 572 | ATP-dependent RNA helicase RhlB; Provisional | 100.0 | |
| KOG0335|consensus | 482 | 100.0 | ||
| KOG0341|consensus | 610 | 100.0 | ||
| PRK11192 | 434 | ATP-dependent RNA helicase SrmB; Provisional | 100.0 | |
| KOG0339|consensus | 731 | 100.0 | ||
| PRK01297 | 475 | ATP-dependent RNA helicase RhlB; Provisional | 100.0 | |
| KOG0350|consensus | 620 | 100.0 | ||
| PTZ00424 | 401 | helicase 45; Provisional | 100.0 | |
| KOG0334|consensus | 997 | 100.0 | ||
| KOG0337|consensus | 529 | 100.0 | ||
| KOG0332|consensus | 477 | 100.0 | ||
| KOG0327|consensus | 397 | 100.0 | ||
| TIGR03817 | 742 | DECH_helic helicase/secretion neighborhood putativ | 100.0 | |
| KOG4284|consensus | 980 | 100.0 | ||
| PLN03137 | 1195 | ATP-dependent DNA helicase; Q4-like; Provisional | 100.0 | |
| TIGR00614 | 470 | recQ_fam ATP-dependent DNA helicase, RecQ family. | 100.0 | |
| KOG0344|consensus | 593 | 100.0 | ||
| PRK02362 | 737 | ski2-like helicase; Provisional | 100.0 | |
| PRK11057 | 607 | ATP-dependent DNA helicase RecQ; Provisional | 100.0 | |
| PRK13767 | 876 | ATP-dependent helicase; Provisional | 100.0 | |
| TIGR01389 | 591 | recQ ATP-dependent DNA helicase RecQ. The ATP-depe | 100.0 | |
| PRK00254 | 720 | ski2-like helicase; Provisional | 100.0 | |
| PRK01172 | 674 | ski2-like helicase; Provisional | 100.0 | |
| TIGR02621 | 844 | cas3_GSU0051 CRISPR-associated helicase Cas3, Anae | 100.0 | |
| TIGR00580 | 926 | mfd transcription-repair coupling factor (mfd). Al | 100.0 | |
| KOG0329|consensus | 387 | 100.0 | ||
| COG1201 | 814 | Lhr Lhr-like helicases [General function predictio | 100.0 | |
| COG0514 | 590 | RecQ Superfamily II DNA helicase [DNA replication, | 100.0 | |
| PRK10917 | 681 | ATP-dependent DNA helicase RecG; Provisional | 100.0 | |
| PRK10689 | 1147 | transcription-repair coupling factor; Provisional | 100.0 | |
| KOG0952|consensus | 1230 | 100.0 | ||
| PRK09751 | 1490 | putative ATP-dependent helicase Lhr; Provisional | 100.0 | |
| PRK09200 | 790 | preprotein translocase subunit SecA; Reviewed | 100.0 | |
| TIGR00643 | 630 | recG ATP-dependent DNA helicase RecG. | 100.0 | |
| KOG0330|consensus | 476 | 100.0 | ||
| TIGR03714 | 762 | secA2 accessory Sec system translocase SecA2. Memb | 100.0 | |
| PHA02653 | 675 | RNA helicase NPH-II; Provisional | 100.0 | |
| KOG0348|consensus | 708 | 100.0 | ||
| KOG0331|consensus | 519 | 100.0 | ||
| PRK12898 | 656 | secA preprotein translocase subunit SecA; Reviewed | 100.0 | |
| TIGR00963 | 745 | secA preprotein translocase, SecA subunit. The pro | 100.0 | |
| TIGR01970 | 819 | DEAH_box_HrpB ATP-dependent helicase HrpB. This mo | 100.0 | |
| PRK09401 | 1176 | reverse gyrase; Reviewed | 100.0 | |
| COG1204 | 766 | Superfamily II helicase [General function predicti | 100.0 | |
| KOG0349|consensus | 725 | 100.0 | ||
| PRK14701 | 1638 | reverse gyrase; Provisional | 100.0 | |
| PRK11664 | 812 | ATP-dependent RNA helicase HrpB; Provisional | 100.0 | |
| COG1202 | 830 | Superfamily II helicase, archaea-specific [General | 100.0 | |
| KOG0352|consensus | 641 | 100.0 | ||
| TIGR01054 | 1171 | rgy reverse gyrase. Generally, these gyrases are e | 100.0 | |
| TIGR01587 | 358 | cas3_core CRISPR-associated helicase Cas3. This mo | 100.0 | |
| KOG0338|consensus | 691 | 100.0 | ||
| KOG0345|consensus | 567 | 100.0 | ||
| KOG0342|consensus | 543 | 100.0 | ||
| KOG0951|consensus | 1674 | 100.0 | ||
| KOG0343|consensus | 758 | 100.0 | ||
| COG0513 | 513 | SrmB Superfamily II DNA and RNA helicases [DNA rep | 100.0 | |
| PHA02558 | 501 | uvsW UvsW helicase; Provisional | 100.0 | |
| COG1111 | 542 | MPH1 ERCC4-like helicases [DNA replication, recomb | 100.0 | |
| KOG0351|consensus | 941 | 100.0 | ||
| KOG0346|consensus | 569 | 100.0 | ||
| KOG0951|consensus | 1674 | 100.0 | ||
| KOG0333|consensus | 673 | 100.0 | ||
| TIGR03158 | 357 | cas3_cyano CRISPR-associated helicase, Cyano-type. | 100.0 | |
| PTZ00110 | 545 | helicase; Provisional | 100.0 | |
| PRK04837 | 423 | ATP-dependent RNA helicase RhlB; Provisional | 100.0 | |
| PRK11776 | 460 | ATP-dependent RNA helicase DbpA; Provisional | 100.0 | |
| PRK13104 | 896 | secA preprotein translocase subunit SecA; Reviewed | 100.0 | |
| PRK11634 | 629 | ATP-dependent RNA helicase DeaD; Provisional | 100.0 | |
| PRK10590 | 456 | ATP-dependent RNA helicase RhlE; Provisional | 100.0 | |
| PRK04537 | 572 | ATP-dependent RNA helicase RhlB; Provisional | 100.0 | |
| COG1205 | 851 | Distinct helicase family with a unique C-terminal | 100.0 | |
| KOG0335|consensus | 482 | 100.0 | ||
| PLN00206 | 518 | DEAD-box ATP-dependent RNA helicase; Provisional | 100.0 | |
| KOG0340|consensus | 442 | 100.0 | ||
| KOG0326|consensus | 459 | 100.0 | ||
| PRK13766 | 773 | Hef nuclease; Provisional | 100.0 | |
| KOG0354|consensus | 746 | 100.0 | ||
| PRK12899 | 970 | secA preprotein translocase subunit SecA; Reviewed | 99.98 | |
| KOG0328|consensus | 400 | 99.98 | ||
| KOG0339|consensus | 731 | 99.98 | ||
| KOG0336|consensus | 629 | 99.98 | ||
| PRK11192 | 434 | ATP-dependent RNA helicase SrmB; Provisional | 99.97 | |
| KOG0353|consensus | 695 | 99.97 | ||
| PRK11131 | 1294 | ATP-dependent RNA helicase HrpA; Provisional | 99.97 | |
| PRK12904 | 830 | preprotein translocase subunit SecA; Reviewed | 99.97 | |
| PRK12906 | 796 | secA preprotein translocase subunit SecA; Reviewed | 99.97 | |
| PRK01297 | 475 | ATP-dependent RNA helicase RhlB; Provisional | 99.97 | |
| PRK05580 | 679 | primosome assembly protein PriA; Validated | 99.97 | |
| TIGR00603 | 732 | rad25 DNA repair helicase rad25. All proteins in t | 99.97 | |
| PRK13107 | 908 | preprotein translocase subunit SecA; Reviewed | 99.97 | |
| TIGR01967 | 1283 | DEAH_box_HrpA ATP-dependent helicase HrpA. This mo | 99.97 | |
| KOG0334|consensus | 997 | 99.97 | ||
| KOG0952|consensus | 1230 | 99.96 | ||
| KOG0337|consensus | 529 | 99.96 | ||
| KOG0341|consensus | 610 | 99.96 | ||
| COG1200 | 677 | RecG RecG-like helicase [DNA replication, recombin | 99.96 | |
| PTZ00424 | 401 | helicase 45; Provisional | 99.96 | |
| KOG0347|consensus | 731 | 99.96 | ||
| PRK09694 | 878 | helicase Cas3; Provisional | 99.96 | |
| KOG0350|consensus | 620 | 99.96 | ||
| TIGR00595 | 505 | priA primosomal protein N'. All proteins in this f | 99.96 | |
| cd00268 | 203 | DEADc DEAD-box helicases. A diverse family of prot | 99.96 | |
| KOG0947|consensus | 1248 | 99.95 | ||
| TIGR03817 | 742 | DECH_helic helicase/secretion neighborhood putativ | 99.95 | |
| KOG4284|consensus | 980 | 99.95 | ||
| KOG0329|consensus | 387 | 99.95 | ||
| COG1201 | 814 | Lhr Lhr-like helicases [General function predictio | 99.95 | |
| PRK04914 | 956 | ATP-dependent helicase HepA; Validated | 99.95 | |
| KOG0327|consensus | 397 | 99.95 | ||
| COG1061 | 442 | SSL2 DNA or RNA helicases of superfamily II [Trans | 99.95 | |
| KOG0948|consensus | 1041 | 99.94 | ||
| COG4581 | 1041 | Superfamily II RNA helicase [DNA replication, reco | 99.94 | |
| PRK13767 | 876 | ATP-dependent helicase; Provisional | 99.94 | |
| PRK12900 | 1025 | secA preprotein translocase subunit SecA; Reviewed | 99.94 | |
| COG1197 | 1139 | Mfd Transcription-repair coupling factor (superfam | 99.94 | |
| KOG0950|consensus | 1008 | 99.93 | ||
| TIGR00614 | 470 | recQ_fam ATP-dependent DNA helicase, RecQ family. | 99.93 | |
| PRK02362 | 737 | ski2-like helicase; Provisional | 99.93 | |
| PLN03137 | 1195 | ATP-dependent DNA helicase; Q4-like; Provisional | 99.93 | |
| KOG0332|consensus | 477 | 99.93 | ||
| PRK09401 | 1176 | reverse gyrase; Reviewed | 99.93 | |
| TIGR02621 | 844 | cas3_GSU0051 CRISPR-associated helicase Cas3, Anae | 99.93 | |
| PRK11448 | 1123 | hsdR type I restriction enzyme EcoKI subunit R; Pr | 99.92 | |
| PF00270 | 169 | DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 | 99.92 | |
| cd00268 | 203 | DEADc DEAD-box helicases. A diverse family of prot | 99.92 | |
| COG1202 | 830 | Superfamily II helicase, archaea-specific [General | 99.92 | |
| TIGR01389 | 591 | recQ ATP-dependent DNA helicase RecQ. The ATP-depe | 99.92 | |
| PRK11057 | 607 | ATP-dependent DNA helicase RecQ; Provisional | 99.92 | |
| PRK00254 | 720 | ski2-like helicase; Provisional | 99.91 | |
| COG1204 | 766 | Superfamily II helicase [General function predicti | 99.91 | |
| PRK14701 | 1638 | reverse gyrase; Provisional | 99.91 | |
| COG4098 | 441 | comFA Superfamily II DNA/RNA helicase required for | 99.91 | |
| PRK13103 | 913 | secA preprotein translocase subunit SecA; Reviewed | 99.91 | |
| COG1205 | 851 | Distinct helicase family with a unique C-terminal | 99.91 | |
| PF00270 | 169 | DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 | 99.91 | |
| PRK01172 | 674 | ski2-like helicase; Provisional | 99.9 | |
| PRK12326 | 764 | preprotein translocase subunit SecA; Reviewed | 99.9 | |
| KOG0344|consensus | 593 | 99.9 | ||
| COG0514 | 590 | RecQ Superfamily II DNA helicase [DNA replication, | 99.89 | |
| TIGR01054 | 1171 | rgy reverse gyrase. Generally, these gyrases are e | 99.89 | |
| COG1643 | 845 | HrpA HrpA-like helicases [DNA replication, recombi | 99.89 | |
| PRK12903 | 925 | secA preprotein translocase subunit SecA; Reviewed | 99.89 | |
| KOG0922|consensus | 674 | 99.88 | ||
| PRK09751 | 1490 | putative ATP-dependent helicase Lhr; Provisional | 99.88 | |
| PRK12902 | 939 | secA preprotein translocase subunit SecA; Reviewed | 99.87 | |
| TIGR00580 | 926 | mfd transcription-repair coupling factor (mfd). Al | 99.87 | |
| CHL00122 | 870 | secA preprotein translocase subunit SecA; Validate | 99.87 | |
| PRK10689 | 1147 | transcription-repair coupling factor; Provisional | 99.86 | |
| PLN03142 | 1033 | Probable chromatin-remodeling complex ATPase chain | 99.86 | |
| KOG0923|consensus | 902 | 99.85 | ||
| COG1203 | 733 | CRISPR-associated helicase Cas3 [Defense mechanism | 99.85 | |
| PRK10917 | 681 | ATP-dependent DNA helicase RecG; Provisional | 99.85 | |
| TIGR01407 | 850 | dinG_rel DnaQ family exonuclease/DinG family helic | 99.84 | |
| COG1198 | 730 | PriA Primosomal protein N' (replication factor Y) | 99.84 | |
| KOG0949|consensus | 1330 | 99.84 | ||
| TIGR00643 | 630 | recG ATP-dependent DNA helicase RecG. | 99.84 | |
| TIGR00631 | 655 | uvrb excinuclease ABC, B subunit. This family is b | 99.83 | |
| COG1110 | 1187 | Reverse gyrase [DNA replication, recombination, an | 99.83 | |
| KOG0924|consensus | 1042 | 99.83 | ||
| KOG0352|consensus | 641 | 99.83 | ||
| TIGR03158 | 357 | cas3_cyano CRISPR-associated helicase, Cyano-type. | 99.82 | |
| KOG0920|consensus | 924 | 99.82 | ||
| PRK12901 | 1112 | secA preprotein translocase subunit SecA; Reviewed | 99.81 | |
| TIGR00348 | 667 | hsdR type I site-specific deoxyribonuclease, HsdR | 99.8 | |
| PHA02653 | 675 | RNA helicase NPH-II; Provisional | 99.8 | |
| COG0556 | 663 | UvrB Helicase subunit of the DNA excision repair c | 99.79 | |
| COG4096 | 875 | HsdR Type I site-specific restriction-modification | 99.79 | |
| KOG0351|consensus | 941 | 99.79 | ||
| KOG0926|consensus | 1172 | 99.78 | ||
| PHA02558 | 501 | uvsW UvsW helicase; Provisional | 99.78 | |
| TIGR01587 | 358 | cas3_core CRISPR-associated helicase Cas3. This mo | 99.78 | |
| PRK05298 | 652 | excinuclease ABC subunit B; Provisional | 99.77 | |
| smart00487 | 201 | DEXDc DEAD-like helicases superfamily. | 99.76 | |
| COG4581 | 1041 | Superfamily II RNA helicase [DNA replication, reco | 99.76 | |
| KOG0353|consensus | 695 | 99.76 | ||
| PRK12898 | 656 | secA preprotein translocase subunit SecA; Reviewed | 99.75 | |
| PRK07246 | 820 | bifunctional ATP-dependent DNA helicase/DNA polyme | 99.75 | |
| TIGR01970 | 819 | DEAH_box_HrpB ATP-dependent helicase HrpB. This mo | 99.75 | |
| PRK11664 | 812 | ATP-dependent RNA helicase HrpB; Provisional | 99.74 | |
| KOG4150|consensus | 1034 | 99.74 | ||
| KOG1123|consensus | 776 | 99.73 | ||
| KOG0349|consensus | 725 | 99.73 | ||
| KOG0354|consensus | 746 | 99.72 | ||
| KOG0385|consensus | 971 | 99.72 | ||
| PRK13766 | 773 | Hef nuclease; Provisional | 99.72 | |
| KOG0947|consensus | 1248 | 99.72 | ||
| PRK12899 | 970 | secA preprotein translocase subunit SecA; Reviewed | 99.71 | |
| COG1111 | 542 | MPH1 ERCC4-like helicases [DNA replication, recomb | 99.7 | |
| smart00487 | 201 | DEXDc DEAD-like helicases superfamily. | 99.7 | |
| PRK05580 | 679 | primosome assembly protein PriA; Validated | 99.7 | |
| TIGR03714 | 762 | secA2 accessory Sec system translocase SecA2. Memb | 99.69 | |
| KOG0925|consensus | 699 | 99.69 | ||
| KOG0948|consensus | 1041 | 99.68 | ||
| TIGR00963 | 745 | secA preprotein translocase, SecA subunit. The pro | 99.67 | |
| PRK09200 | 790 | preprotein translocase subunit SecA; Reviewed | 99.66 | |
| COG0653 | 822 | SecA Preprotein translocase subunit SecA (ATPase, | 99.65 | |
| cd00079 | 131 | HELICc Helicase superfamily c-terminal domain; ass | 99.65 | |
| PRK08074 | 928 | bifunctional ATP-dependent DNA helicase/DNA polyme | 99.65 | |
| KOG0390|consensus | 776 | 99.64 | ||
| PF00271 | 78 | Helicase_C: Helicase conserved C-terminal domain; | 99.63 | |
| TIGR00603 | 732 | rad25 DNA repair helicase rad25. All proteins in t | 99.63 | |
| TIGR03117 | 636 | cas_csf4 CRISPR-associated DEAD/DEAH-box helicase | 99.62 | |
| PRK13104 | 896 | secA preprotein translocase subunit SecA; Reviewed | 99.62 | |
| COG1061 | 442 | SSL2 DNA or RNA helicases of superfamily II [Trans | 99.62 | |
| PF13959 | 65 | DUF4217: Domain of unknown function (DUF4217) | 99.62 | |
| PRK09694 | 878 | helicase Cas3; Provisional | 99.61 | |
| COG1110 | 1187 | Reverse gyrase [DNA replication, recombination, an | 99.6 | |
| COG1200 | 677 | RecG RecG-like helicase [DNA replication, recombin | 99.58 | |
| KOG0387|consensus | 923 | 99.57 | ||
| TIGR00595 | 505 | priA primosomal protein N'. All proteins in this f | 99.56 | |
| PF04851 | 184 | ResIII: Type III restriction enzyme, res subunit; | 99.56 | |
| cd00046 | 144 | DEXDc DEAD-like helicases superfamily. A diverse f | 99.56 | |
| COG4889 | 1518 | Predicted helicase [General function prediction on | 99.54 | |
| cd00046 | 144 | DEXDc DEAD-like helicases superfamily. A diverse f | 99.54 | |
| KOG0950|consensus | 1008 | 99.53 | ||
| PF04851 | 184 | ResIII: Type III restriction enzyme, res subunit; | 99.52 | |
| PRK11131 | 1294 | ATP-dependent RNA helicase HrpA; Provisional | 99.51 | |
| KOG0392|consensus | 1549 | 99.51 | ||
| KOG0953|consensus | 700 | 99.5 | ||
| PRK12904 | 830 | preprotein translocase subunit SecA; Reviewed | 99.49 | |
| COG1199 | 654 | DinG Rad3-related DNA helicases [Transcription / D | 99.48 | |
| PRK11747 | 697 | dinG ATP-dependent DNA helicase DinG; Provisional | 99.46 | |
| COG1198 | 730 | PriA Primosomal protein N' (replication factor Y) | 99.45 | |
| PRK11448 | 1123 | hsdR type I restriction enzyme EcoKI subunit R; Pr | 99.45 | |
| COG1197 | 1139 | Mfd Transcription-repair coupling factor (superfam | 99.45 | |
| smart00490 | 82 | HELICc helicase superfamily c-terminal domain. | 99.45 | |
| KOG0389|consensus | 941 | 99.44 | ||
| PRK14873 | 665 | primosome assembly protein PriA; Provisional | 99.43 | |
| KOG1000|consensus | 689 | 99.42 | ||
| TIGR02562 | 1110 | cas3_yersinia CRISPR-associated helicase Cas3. The | 99.42 | |
| COG4098 | 441 | comFA Superfamily II DNA/RNA helicase required for | 99.4 | |
| TIGR01967 | 1283 | DEAH_box_HrpA ATP-dependent helicase HrpA. This mo | 99.37 | |
| TIGR00604 | 705 | rad3 DNA repair helicase (rad3). All proteins in t | 99.36 | |
| KOG0384|consensus | 1373 | 99.35 | ||
| PRK13107 | 908 | preprotein translocase subunit SecA; Reviewed | 99.32 | |
| PF06862 | 442 | DUF1253: Protein of unknown function (DUF1253); In | 99.3 | |
| TIGR00348 | 667 | hsdR type I site-specific deoxyribonuclease, HsdR | 99.15 | |
| KOG0949|consensus | 1330 | 99.14 | ||
| COG4096 | 875 | HsdR Type I site-specific restriction-modification | 99.12 | |
| KOG2340|consensus | 698 | 99.11 | ||
| KOG1002|consensus | 791 | 99.08 | ||
| PRK04914 | 956 | ATP-dependent helicase HepA; Validated | 99.06 | |
| PF02399 | 824 | Herpes_ori_bp: Origin of replication binding prote | 99.05 | |
| COG1203 | 733 | CRISPR-associated helicase Cas3 [Defense mechanism | 99.05 | |
| PRK12906 | 796 | secA preprotein translocase subunit SecA; Reviewed | 99.04 | |
| KOG0391|consensus | 1958 | 99.0 | ||
| PF07652 | 148 | Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR | 98.99 | |
| PF07517 | 266 | SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011 | 98.99 | |
| TIGR03117 | 636 | cas_csf4 CRISPR-associated DEAD/DEAH-box helicase | 98.99 | |
| TIGR01407 | 850 | dinG_rel DnaQ family exonuclease/DinG family helic | 98.96 | |
| PRK12326 | 764 | preprotein translocase subunit SecA; Reviewed | 98.95 | |
| KOG0388|consensus | 1185 | 98.94 | ||
| KOG0386|consensus | 1157 | 98.94 | ||
| PRK14873 | 665 | primosome assembly protein PriA; Provisional | 98.94 | |
| smart00488 | 289 | DEXDc2 DEAD-like helicases superfamily. | 98.93 | |
| smart00489 | 289 | DEXDc3 DEAD-like helicases superfamily. | 98.93 | |
| PLN03142 | 1033 | Probable chromatin-remodeling complex ATPase chain | 98.9 | |
| KOG4439|consensus | 901 | 98.87 | ||
| PRK07246 | 820 | bifunctional ATP-dependent DNA helicase/DNA polyme | 98.87 | |
| COG1643 | 845 | HrpA HrpA-like helicases [DNA replication, recombi | 98.82 | |
| smart00488 | 289 | DEXDc2 DEAD-like helicases superfamily. | 98.81 | |
| smart00489 | 289 | DEXDc3 DEAD-like helicases superfamily. | 98.81 | |
| PF07652 | 148 | Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR | 98.8 | |
| COG0610 | 962 | Type I site-specific restriction-modification syst | 98.74 | |
| KOG0920|consensus | 924 | 98.73 | ||
| PF00176 | 299 | SNF2_N: SNF2 family N-terminal domain; InterPro: I | 98.72 | |
| COG0553 | 866 | HepA Superfamily II DNA/RNA helicases, SNF2 family | 98.71 | |
| PF00176 | 299 | SNF2_N: SNF2 family N-terminal domain; InterPro: I | 98.65 | |
| KOG1123|consensus | 776 | 98.64 | ||
| PRK13103 | 913 | secA preprotein translocase subunit SecA; Reviewed | 98.58 | |
| KOG0922|consensus | 674 | 98.57 | ||
| PRK08074 | 928 | bifunctional ATP-dependent DNA helicase/DNA polyme | 98.55 | |
| PRK12902 | 939 | secA preprotein translocase subunit SecA; Reviewed | 98.49 | |
| PF07517 | 266 | SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011 | 98.49 | |
| KOG0921|consensus | 1282 | 98.45 | ||
| KOG0926|consensus | 1172 | 98.4 | ||
| KOG1015|consensus | 1567 | 98.4 | ||
| PRK11747 | 697 | dinG ATP-dependent DNA helicase DinG; Provisional | 98.35 | |
| KOG2340|consensus | 698 | 98.3 | ||
| PRK15483 | 986 | type III restriction-modification system StyLTI en | 98.27 | |
| PRK15483 | 986 | type III restriction-modification system StyLTI en | 98.26 | |
| KOG4150|consensus | 1034 | 98.17 | ||
| PRK12903 | 925 | secA preprotein translocase subunit SecA; Reviewed | 98.15 | |
| KOG0385|consensus | 971 | 98.11 | ||
| COG1199 | 654 | DinG Rad3-related DNA helicases [Transcription / D | 98.09 | |
| CHL00122 | 870 | secA preprotein translocase subunit SecA; Validate | 98.08 | |
| TIGR00604 | 705 | rad3 DNA repair helicase (rad3). All proteins in t | 98.05 | |
| PF13086 | 236 | AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV | 98.05 | |
| PF13086 | 236 | AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV | 98.01 | |
| PF02562 | 205 | PhoH: PhoH-like protein; InterPro: IPR003714 PhoH | 98.01 | |
| PF06862 | 442 | DUF1253: Protein of unknown function (DUF1253); In | 98.01 | |
| PF13604 | 196 | AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL | 97.97 | |
| TIGR02562 | 1110 | cas3_yersinia CRISPR-associated helicase Cas3. The | 97.96 | |
| COG3587 | 985 | Restriction endonuclease [Defense mechanisms] | 97.94 | |
| COG4889 | 1518 | Predicted helicase [General function prediction on | 97.93 | |
| TIGR00596 | 814 | rad1 DNA repair protein (rad1). This family is bas | 97.92 | |
| KOG0390|consensus | 776 | 97.91 | ||
| KOG0924|consensus | 1042 | 97.88 | ||
| PF02399 | 824 | Herpes_ori_bp: Origin of replication binding prote | 97.85 | |
| KOG0387|consensus | 923 | 97.83 | ||
| PF12340 | 229 | DUF3638: Protein of unknown function (DUF3638); In | 97.79 | |
| PF13307 | 167 | Helicase_C_2: Helicase C-terminal domain; PDB: 4A1 | 97.77 | |
| KOG0925|consensus | 699 | 97.77 | ||
| PF13604 | 196 | AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL | 97.74 | |
| KOG0391|consensus | 1958 | 97.73 | ||
| COG0610 | 962 | Type I site-specific restriction-modification syst | 97.7 | |
| KOG0389|consensus | 941 | 97.69 | ||
| PF02562 | 205 | PhoH: PhoH-like protein; InterPro: IPR003714 PhoH | 97.68 | |
| KOG0923|consensus | 902 | 97.66 | ||
| KOG1000|consensus | 689 | 97.62 | ||
| KOG1803|consensus | 649 | 97.61 | ||
| KOG4439|consensus | 901 | 97.59 | ||
| PRK10536 | 262 | hypothetical protein; Provisional | 97.52 | |
| KOG1002|consensus | 791 | 97.49 | ||
| KOG1803|consensus | 649 | 97.46 | ||
| TIGR00376 | 637 | DNA helicase, putative. The gene product may repre | 97.44 | |
| KOG1016|consensus | 1387 | 97.44 | ||
| PF09848 | 352 | DUF2075: Uncharacterized conserved protein (DUF207 | 97.42 | |
| PF13872 | 303 | AAA_34: P-loop containing NTP hydrolase pore-1 | 97.41 | |
| PF13245 | 76 | AAA_19: Part of AAA domain | 97.39 | |
| PRK10875 | 615 | recD exonuclease V subunit alpha; Provisional | 97.38 | |
| PF13872 | 303 | AAA_34: P-loop containing NTP hydrolase pore-1 | 97.37 | |
| KOG1802|consensus | 935 | 97.34 | ||
| TIGR00376 | 637 | DNA helicase, putative. The gene product may repre | 97.32 | |
| TIGR01447 | 586 | recD exodeoxyribonuclease V, alpha subunit. This f | 97.32 | |
| PF12340 | 229 | DUF3638: Protein of unknown function (DUF3638); In | 97.3 | |
| KOG1802|consensus | 935 | 97.28 | ||
| PF13245 | 76 | AAA_19: Part of AAA domain | 97.25 | |
| PRK10536 | 262 | hypothetical protein; Provisional | 97.19 | |
| KOG0953|consensus | 700 | 97.03 | ||
| TIGR01448 | 720 | recD_rel helicase, putative, RecD/TraA family. Thi | 96.98 | |
| PF09848 | 352 | DUF2075: Uncharacterized conserved protein (DUF207 | 96.94 | |
| PF00580 | 315 | UvrD-helicase: UvrD/REP helicase N-terminal domain | 96.8 | |
| TIGR01447 | 586 | recD exodeoxyribonuclease V, alpha subunit. This f | 96.78 | |
| PRK10875 | 615 | recD exonuclease V subunit alpha; Provisional | 96.78 | |
| PRK12900 | 1025 | secA preprotein translocase subunit SecA; Reviewed | 96.78 | |
| PRK12901 | 1112 | secA preprotein translocase subunit SecA; Reviewed | 96.75 | |
| PRK13889 | 988 | conjugal transfer relaxase TraA; Provisional | 96.72 | |
| COG3587 | 985 | Restriction endonuclease [Defense mechanisms] | 96.7 | |
| PF00580 | 315 | UvrD-helicase: UvrD/REP helicase N-terminal domain | 96.67 | |
| KOG1132|consensus | 945 | 96.62 | ||
| KOG1132|consensus | 945 | 96.62 | ||
| KOG0392|consensus | 1549 | 96.56 | ||
| PF13401 | 131 | AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S | 96.56 | |
| TIGR02760 | 1960 | TraI_TIGR conjugative transfer relaxase protein Tr | 96.54 | |
| PRK06526 | 254 | transposase; Provisional | 96.52 | |
| KOG1805|consensus | 1100 | 96.5 | ||
| TIGR01448 | 720 | recD_rel helicase, putative, RecD/TraA family. Thi | 96.49 | |
| TIGR02768 | 744 | TraA_Ti Ti-type conjugative transfer relaxase TraA | 96.48 | |
| COG1875 | 436 | NYN ribonuclease and ATPase of PhoH family domains | 96.47 | |
| KOG0921|consensus | 1282 | 96.38 | ||
| COG3421 | 812 | Uncharacterized protein conserved in bacteria [Fun | 96.37 | |
| KOG1805|consensus | 1100 | 96.33 | ||
| PF05970 | 364 | PIF1: PIF1-like helicase; InterPro: IPR010285 This | 96.32 | |
| PHA02533 | 534 | 17 large terminase protein; Provisional | 96.3 | |
| KOG0386|consensus | 1157 | 96.29 | ||
| KOG0384|consensus | 1373 | 96.24 | ||
| COG0556 | 663 | UvrB Helicase subunit of the DNA excision repair c | 96.24 | |
| PRK08181 | 269 | transposase; Validated | 96.22 | |
| PF13401 | 131 | AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S | 96.21 | |
| PHA02533 | 534 | 17 large terminase protein; Provisional | 96.2 | |
| KOG0989|consensus | 346 | 96.12 | ||
| KOG0388|consensus | 1185 | 96.07 | ||
| smart00492 | 141 | HELICc3 helicase superfamily c-terminal domain. | 96.05 | |
| PRK13889 | 988 | conjugal transfer relaxase TraA; Provisional | 96.01 | |
| PRK04296 | 190 | thymidine kinase; Provisional | 95.99 | |
| PRK13826 | 1102 | Dtr system oriT relaxase; Provisional | 95.96 | |
| cd00009 | 151 | AAA The AAA+ (ATPases Associated with a wide varie | 95.95 | |
| PRK08181 | 269 | transposase; Validated | 95.9 | |
| PRK12723 | 388 | flagellar biosynthesis regulator FlhF; Provisional | 95.9 | |
| PF14617 | 252 | CMS1: U3-containing 90S pre-ribosomal complex subu | 95.85 | |
| PRK07952 | 244 | DNA replication protein DnaC; Validated | 95.83 | |
| smart00491 | 142 | HELICc2 helicase superfamily c-terminal domain. | 95.81 | |
| PRK06526 | 254 | transposase; Provisional | 95.74 | |
| cd00009 | 151 | AAA The AAA+ (ATPases Associated with a wide varie | 95.7 | |
| TIGR02768 | 744 | TraA_Ti Ti-type conjugative transfer relaxase TraA | 95.68 | |
| PF14617 | 252 | CMS1: U3-containing 90S pre-ribosomal complex subu | 95.64 | |
| PF05970 | 364 | PIF1: PIF1-like helicase; InterPro: IPR010285 This | 95.62 | |
| PRK00149 | 450 | dnaA chromosomal replication initiation protein; R | 95.62 | |
| PF03354 | 477 | Terminase_1: Phage Terminase ; InterPro: IPR005021 | 95.53 | |
| PF05876 | 557 | Terminase_GpA: Phage terminase large subunit (GpA) | 95.46 | |
| PF05621 | 302 | TniB: Bacterial TniB protein; InterPro: IPR008868 | 95.32 | |
| COG1484 | 254 | DnaC DNA replication protein [DNA replication, rec | 95.31 | |
| PRK07952 | 244 | DNA replication protein DnaC; Validated | 95.29 | |
| PRK11889 | 436 | flhF flagellar biosynthesis regulator FlhF; Provis | 95.27 | |
| PRK12723 | 388 | flagellar biosynthesis regulator FlhF; Provisional | 95.21 | |
| PF13871 | 278 | Helicase_C_4: Helicase_C-like | 95.09 | |
| PRK11034 | 758 | clpA ATP-dependent Clp protease ATP-binding subuni | 95.08 | |
| PRK04296 | 190 | thymidine kinase; Provisional | 95.07 | |
| COG0653 | 822 | SecA Preprotein translocase subunit SecA (ATPase, | 95.02 | |
| cd01124 | 187 | KaiC KaiC is a circadian clock protein primarily f | 94.98 | |
| PRK08084 | 235 | DNA replication initiation factor; Provisional | 94.9 | |
| PRK08727 | 233 | hypothetical protein; Validated | 94.89 | |
| PRK12377 | 248 | putative replication protein; Provisional | 94.88 | |
| PRK06921 | 266 | hypothetical protein; Provisional | 94.85 | |
| KOG0298|consensus | 1394 | 94.77 | ||
| PRK14087 | 450 | dnaA chromosomal replication initiation protein; P | 94.76 | |
| PRK13826 | 1102 | Dtr system oriT relaxase; Provisional | 94.69 | |
| PHA03368 | 738 | DNA packaging terminase subunit 1; Provisional | 94.66 | |
| PRK06893 | 229 | DNA replication initiation factor; Validated | 94.63 | |
| PHA03368 | 738 | DNA packaging terminase subunit 1; Provisional | 94.59 | |
| COG1875 | 436 | NYN ribonuclease and ATPase of PhoH family domains | 94.58 | |
| KOG0989|consensus | 346 | 94.55 | ||
| cd01124 | 187 | KaiC KaiC is a circadian clock protein primarily f | 94.53 | |
| COG3421 | 812 | Uncharacterized protein conserved in bacteria [Fun | 94.5 | |
| PRK08116 | 268 | hypothetical protein; Validated | 94.47 | |
| PRK14712 | 1623 | conjugal transfer nickase/helicase TraI; Provision | 94.44 | |
| PF05876 | 557 | Terminase_GpA: Phage terminase large subunit (GpA) | 94.42 | |
| cd01120 | 165 | RecA-like_NTPases RecA-like NTPases. This family i | 94.41 | |
| TIGR00362 | 405 | DnaA chromosomal replication initiator protein Dna | 94.38 | |
| smart00382 | 148 | AAA ATPases associated with a variety of cellular | 94.36 | |
| PRK12377 | 248 | putative replication protein; Provisional | 94.34 | |
| TIGR02881 | 261 | spore_V_K stage V sporulation protein K. Members o | 94.33 | |
| PRK14722 | 374 | flhF flagellar biosynthesis regulator FlhF; Provis | 94.31 | |
| cd01120 | 165 | RecA-like_NTPases RecA-like NTPases. This family i | 94.31 | |
| PF03354 | 477 | Terminase_1: Phage Terminase ; InterPro: IPR005021 | 94.3 | |
| PF00308 | 219 | Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013 | 94.25 | |
| PRK00149 | 450 | dnaA chromosomal replication initiation protein; R | 94.24 | |
| PRK05642 | 234 | DNA replication initiation factor; Validated | 94.23 | |
| PRK08116 | 268 | hypothetical protein; Validated | 94.21 | |
| PRK14974 | 336 | cell division protein FtsY; Provisional | 94.2 | |
| COG2805 | 353 | PilT Tfp pilus assembly protein, pilus retraction | 94.19 | |
| PRK05703 | 424 | flhF flagellar biosynthesis regulator FlhF; Valida | 94.15 | |
| PRK07003 | 830 | DNA polymerase III subunits gamma and tau; Validat | 94.15 | |
| PRK05642 | 234 | DNA replication initiation factor; Validated | 94.13 | |
| TIGR03420 | 226 | DnaA_homol_Hda DnaA regulatory inactivator Hda. Me | 94.08 | |
| PF00308 | 219 | Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013 | 94.07 | |
| smart00382 | 148 | AAA ATPases associated with a variety of cellular | 94.02 | |
| PRK08727 | 233 | hypothetical protein; Validated | 94.02 | |
| PRK06835 | 329 | DNA replication protein DnaC; Validated | 94.02 | |
| PHA03333 | 752 | putative ATPase subunit of terminase; Provisional | 94.02 | |
| PRK11054 | 684 | helD DNA helicase IV; Provisional | 93.98 | |
| TIGR02881 | 261 | spore_V_K stage V sporulation protein K. Members o | 93.97 | |
| PF00448 | 196 | SRP54: SRP54-type protein, GTPase domain; InterPro | 93.93 | |
| PTZ00112 | 1164 | origin recognition complex 1 protein; Provisional | 93.81 | |
| PRK10919 | 672 | ATP-dependent DNA helicase Rep; Provisional | 93.8 | |
| PTZ00112 | 1164 | origin recognition complex 1 protein; Provisional | 93.71 | |
| PRK10919 | 672 | ATP-dependent DNA helicase Rep; Provisional | 93.71 | |
| PRK11889 | 436 | flhF flagellar biosynthesis regulator FlhF; Provis | 93.64 | |
| CHL00181 | 287 | cbbX CbbX; Provisional | 93.56 | |
| TIGR02785 | 1232 | addA_Gpos recombination helicase AddA, Firmicutes | 93.55 | |
| PRK13709 | 1747 | conjugal transfer nickase/helicase TraI; Provision | 93.52 | |
| KOG1001|consensus | 674 | 93.5 | ||
| PRK06893 | 229 | DNA replication initiation factor; Validated | 93.47 | |
| PRK12323 | 700 | DNA polymerase III subunits gamma and tau; Provisi | 93.46 | |
| TIGR00362 | 405 | DnaA chromosomal replication initiator protein Dna | 93.46 | |
| PRK08084 | 235 | DNA replication initiation factor; Provisional | 93.45 | |
| PRK14964 | 491 | DNA polymerase III subunits gamma and tau; Provisi | 93.44 | |
| PRK14086 | 617 | dnaA chromosomal replication initiation protein; P | 93.42 | |
| PRK14087 | 450 | dnaA chromosomal replication initiation protein; P | 93.41 | |
| PRK00411 | 394 | cdc6 cell division control protein 6; Reviewed | 93.41 | |
| COG1474 | 366 | CDC6 Cdc6-related protein, AAA superfamily ATPase | 93.25 | |
| COG1474 | 366 | CDC6 Cdc6-related protein, AAA superfamily ATPase | 93.2 | |
| PF05621 | 302 | TniB: Bacterial TniB protein; InterPro: IPR008868 | 93.2 | |
| TIGR01075 | 715 | uvrD DNA helicase II. Designed to identify uvrD me | 93.05 | |
| PLN03025 | 319 | replication factor C subunit; Provisional | 92.98 | |
| PRK08769 | 319 | DNA polymerase III subunit delta'; Validated | 92.96 | |
| TIGR03420 | 226 | DnaA_homol_Hda DnaA regulatory inactivator Hda. Me | 92.93 | |
| PHA03372 | 668 | DNA packaging terminase subunit 1; Provisional | 92.9 | |
| PRK14712 | 1623 | conjugal transfer nickase/helicase TraI; Provision | 92.87 | |
| PRK11773 | 721 | uvrD DNA-dependent helicase II; Provisional | 92.85 | |
| COG0553 | 866 | HepA Superfamily II DNA/RNA helicases, SNF2 family | 92.81 | |
| PRK14958 | 509 | DNA polymerase III subunits gamma and tau; Provisi | 92.8 | |
| PRK11054 | 684 | helD DNA helicase IV; Provisional | 92.8 | |
| PRK07994 | 647 | DNA polymerase III subunits gamma and tau; Validat | 92.8 | |
| TIGR02760 | 1960 | TraI_TIGR conjugative transfer relaxase protein Tr | 92.79 | |
| PRK06835 | 329 | DNA replication protein DnaC; Validated | 92.77 | |
| PRK14961 | 363 | DNA polymerase III subunits gamma and tau; Provisi | 92.76 | |
| PRK14956 | 484 | DNA polymerase III subunits gamma and tau; Provisi | 92.75 | |
| TIGR02785 | 1232 | addA_Gpos recombination helicase AddA, Firmicutes | 92.75 | |
| TIGR01075 | 715 | uvrD DNA helicase II. Designed to identify uvrD me | 92.73 | |
| PHA03333 | 752 | putative ATPase subunit of terminase; Provisional | 92.68 | |
| TIGR00631 | 655 | uvrb excinuclease ABC, B subunit. This family is b | 92.67 | |
| PRK00411 | 394 | cdc6 cell division control protein 6; Reviewed | 92.61 | |
| PRK05298 | 652 | excinuclease ABC subunit B; Provisional | 92.59 | |
| cd01122 | 271 | GP4d_helicase GP4d_helicase is a homohexameric 5'- | 92.57 | |
| PRK05703 | 424 | flhF flagellar biosynthesis regulator FlhF; Valida | 92.52 | |
| TIGR01074 | 664 | rep ATP-dependent DNA helicase Rep. Designed to id | 92.51 |
| >KOG0348|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-102 Score=808.72 Aligned_cols=519 Identities=48% Similarity=0.784 Sum_probs=474.0
Q ss_pred cccccccccccCCCCC-CCCCCCCCCCCccccCCCCCCCCCCCCCHHHHHHHHhcCCCCCCCHHHHHhHHhhhcCCcEEE
Q psy15524 356 VKSGPISSLFQNNPDI-PNVPTRRLKPVSEALFAPTSYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLV 434 (930)
Q Consensus 356 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~f~~l~~l~~~~~~~l~~~~~~~~~~~iQ~~~i~~il~~~d~lv 434 (930)
....+.++.+.+++++ ++++.+.++++.+..|....|.+| ||+|.+.+.|.+.|++..||.+|+++||.+++|+|++|
T Consensus 101 ~Q~~k~~~~~~~~~~i~~~lh~~vvk~v~e~~fts~~f~~L-GL~~~lv~~L~~~m~i~~pTsVQkq~IP~lL~grD~lV 179 (708)
T KOG0348|consen 101 KQFAKDSSKAKENPDIAPNLHRPVVKQVSEAPFTSAAFASL-GLHPHLVSHLNTKMKISAPTSVQKQAIPVLLEGRDALV 179 (708)
T ss_pred hhhhhchhhhccCCccchhhcchhhccccccccccccchhc-CCCHHHHHHHHHHhccCccchHhhcchhhhhcCcceEE
Confidence 3344556778888888 688888999999999999999999 99999999999999999999999999999999999999
Q ss_pred EccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHHHHhhccCCCcceEEEeCCCchHHHHHHH
Q psy15524 435 RSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARI 514 (930)
Q Consensus 435 ~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~ 514 (930)
.|+||||||++|++|+++.|+.+.+++.|.+|+.+|||+||||||.|+|+.++++.+.+.|++++.++||++.+++++++
T Consensus 180 ~aQTGSGKTLAYllPiVq~Lq~m~~ki~Rs~G~~ALVivPTREL~~Q~y~~~qKLl~~~hWIVPg~lmGGEkkKSEKARL 259 (708)
T KOG0348|consen 180 RAQTGSGKTLAYLLPIVQSLQAMEPKIQRSDGPYALVIVPTRELALQIYETVQKLLKPFHWIVPGVLMGGEKKKSEKARL 259 (708)
T ss_pred EcCCCCcccHHHHHHHHHHHHhcCccccccCCceEEEEechHHHHHHHHHHHHHHhcCceEEeeceeecccccccHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCcEEEECchhHHHhhhccCCcccccceEEEEecchhhhhcCcHHHHHHHHHHHhh----------cCccceEEEEcc
Q psy15524 515 RKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKK----------QKPQFQSILLSA 584 (930)
Q Consensus 515 ~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~l~~~g~~~~l~~i~~~l~~----------~~~~~q~vl~SA 584 (930)
++|++|+|+|||||+||+.++..+.+++++|||+||||+++++||++++..|++.+.. .+++.|.+++||
T Consensus 260 RKGiNILIgTPGRLvDHLknT~~i~~s~LRwlVlDEaDrlleLGfekdit~Il~~v~~~~~~e~~~~~lp~q~q~mLlSA 339 (708)
T KOG0348|consen 260 RKGINILIGTPGRLVDHLKNTKSIKFSRLRWLVLDEADRLLELGFEKDITQILKAVHSIQNAECKDPKLPHQLQNMLLSA 339 (708)
T ss_pred hcCceEEEcCchHHHHHHhccchheeeeeeEEEecchhHHHhccchhhHHHHHHHHhhccchhcccccccHHHHhHhhhh
Confidence 9999999999999999999999999999999999999999999999999999999943 233589999999
Q ss_pred ccCHHHHHHHhhhcCCCEEEEccCCCC----------------cccCccceecCCCceEEEEEcCchhhHHHHHHHHHhh
Q psy15524 585 TLTPAVQRLAGMTLQNPIQIDAADSTD----------------IHNTTDSLVIPDSLKQHFIVTPPKLRLVALASFILGK 648 (930)
Q Consensus 585 T~~~~~~~l~~~~~~~~~~i~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 648 (930)
|+++.+.++++..+.||+.|..+.... .....+.+.+|+.+.|.|.++|++.|+..|.++|.+.
T Consensus 340 TLtd~V~rLa~~sLkDpv~I~ld~s~~~~~p~~~a~~ev~~~~~~~~l~~~~iPeqL~qry~vVPpKLRLV~Laa~L~~~ 419 (708)
T KOG0348|consen 340 TLTDGVNRLADLSLKDPVYISLDKSHSQLNPKDKAVQEVDDGPAGDKLDSFAIPEQLLQRYTVVPPKLRLVALAALLLNK 419 (708)
T ss_pred hhHHHHHHHhhccccCceeeeccchhhhcCcchhhhhhcCCcccccccccccCcHHhhhceEecCCchhHHHHHHHHHHH
Confidence 999999999999999999998332211 0111244789999999999999999999999999998
Q ss_pred ccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCC-------------------CceEEEecCCCCHHHHHHHHHHhhcC
Q psy15524 649 CQNVNEDEESKMLVFMATQDMADYHTELLSTVLGE-------------------NIAFFKLHGSMSQSERTEVFKTFRSV 709 (930)
Q Consensus 649 ~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~-------------------~~~~~~lhg~~~~~~R~~v~~~F~~~ 709 (930)
+.... ..++|||+++++.+++++++|.+.+.. +..++.+||+|+|++|..+++.|...
T Consensus 420 ~k~~~---~qk~iVF~S~~d~VeFHy~lf~~~l~~~~e~~s~~~~s~g~~~l~~~~k~~rLHGsm~QeeRts~f~~Fs~~ 496 (708)
T KOG0348|consen 420 VKFEE---KQKMIVFFSCSDSVEFHYSLFSEALLSHLEGSSGAPDSEGLPPLFMDLKFYRLHGSMEQEERTSVFQEFSHS 496 (708)
T ss_pred hhhhh---hceeEEEEechhHHHHHHHHHHhhhhcccccccCCcccCCChhhhhcceEEEecCchhHHHHHHHHHhhccc
Confidence 87655 679999999999999999999876532 56799999999999999999999999
Q ss_pred CCcEEEeccccccccCCCCccEEEEecCCCChhhHHhhhcccccCCCCceEEEEeCcccHHHHHHHHhcCCccchhchHH
Q psy15524 710 KSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPSEVKLVEELQNRRIRIEEIKLKD 789 (930)
Q Consensus 710 ~~~vLv~T~~~~~GlDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~ 789 (930)
+..||+||||++||+|+|+|+|||+||+|.++++|+||+|||+|+|..|.+++|+.|.|.+|++.++.+.+.+.+..+..
T Consensus 497 ~~~VLLcTDVAaRGLDlP~V~~vVQYd~P~s~adylHRvGRTARaG~kG~alLfL~P~Eaey~~~l~~~~~~l~q~~~~~ 576 (708)
T KOG0348|consen 497 RRAVLLCTDVAARGLDLPHVGLVVQYDPPFSTADYLHRVGRTARAGEKGEALLFLLPSEAEYVNYLKKHHIMLLQFDMEI 576 (708)
T ss_pred cceEEEehhhhhccCCCCCcCeEEEeCCCCCHHHHHHHhhhhhhccCCCceEEEecccHHHHHHHHHhhcchhhccchhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988888888777
Q ss_pred HHHhhhhhhccCccccccccchHHHHHHHHHHHHHHHHhcHHHHHHHhhhhHHHHHHhhhcccccccccccccCChHHHH
Q psy15524 790 CLQNLLSVKMEGDLSRLADGNVETAATALQMSFESAVLQQKILHTSACKGYTSWVRFYASYSKDLRHIFNFKQIHLGHFA 869 (930)
Q Consensus 790 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~a~~s~~~~y~~~~~~~~~~f~~~~l~~~~~a 869 (930)
++..+.-... +....++++++..+|..++.++..++.+..+|.+||+||+|+|++|+.+++.||+++.||+||+|
T Consensus 577 ~l~~~~~~~~-----k~~~~e~~~~at~~q~~~e~~~~~~~~~~~~a~kaf~S~vr~Yath~~elk~iFnvr~lHlGH~A 651 (708)
T KOG0348|consen 577 LLPAFKPRKD-----KAKTKEWQERATTLQLNLERLVVGDEAMKNLAKKAFVSWVRAYATHPSELKSIFNVRFLHLGHVA 651 (708)
T ss_pred hhhhcCcccc-----cccchhhhhhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHhhChhhhccceehhhhhhhHHH
Confidence 7665541111 11234788999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCCCCccccc
Q psy15524 870 KSFALRDAPSVISG 883 (930)
Q Consensus 870 ~sf~l~~~p~~~~~ 883 (930)
+||||++.|..+.+
T Consensus 652 KSFaLReaP~k~~g 665 (708)
T KOG0348|consen 652 KSFALREAPGKLSG 665 (708)
T ss_pred HhhHhhhcchhhhc
Confidence 99999999966553
|
|
| >KOG0345|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-84 Score=670.97 Aligned_cols=448 Identities=35% Similarity=0.587 Sum_probs=400.2
Q ss_pred CCCCCCC-CCCCHHHHHHHHhcCCCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCe
Q psy15524 389 PTSYEEF-PGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGI 467 (930)
Q Consensus 389 ~~~f~~l-~~l~~~~~~~l~~~~~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~ 467 (930)
+.+|+++ ++|+|++++++.+ +||..|||+|..+||.++.++||+|.|+||||||+||++|+++.+++...+.+ ....
T Consensus 3 ~~~~~~l~~~L~~~l~~~l~~-~GF~~mTpVQa~tIPlll~~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~-~~~v 80 (567)
T KOG0345|consen 3 PKSFSSLAPPLSPWLLEALDE-SGFEKMTPVQAATIPLLLKNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTP-PGQV 80 (567)
T ss_pred CcchhhcCCCccHHHHHHHHh-cCCcccCHHHHhhhHHHhcCCceEEEcCCCCCchhhHHHHHHHHHHhhccCCC-ccce
Confidence 3578888 3577999999985 89999999999999999999999999999999999999999999976544332 2246
Q ss_pred eEEEEccCHHHHHHHHHHHHHhhccCCCcceEEEeCCCchHHHHHHHh-cCCcEEEECchhHHHhhhc-cCCcccccceE
Q psy15524 468 YAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIR-KGISILVATPGRLLDHCKH-TETLKFSKVEH 545 (930)
Q Consensus 468 ~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~-~~~~Ilv~Tp~rl~~~l~~-~~~~~~~~l~~ 545 (930)
.+|||+||||||.|+.+++..+...+..+.+.+++||.+.......+. ++++|+|||||||.+++.+ ...++++++++
T Consensus 81 galIIsPTRELa~QI~~V~~~F~~~l~~l~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL~di~~~~~~~l~~rsLe~ 160 (567)
T KOG0345|consen 81 GALIISPTRELARQIREVAQPFLEHLPNLNCELLVGGRSVEEDIKTFKEEGPNILVGTPGRLLDILQREAEKLSFRSLEI 160 (567)
T ss_pred eEEEecCcHHHHHHHHHHHHHHHHhhhccceEEEecCccHHHHHHHHHHhCCcEEEeCchhHHHHHhchhhhccccccce
Confidence 899999999999999999999999888888999999988877776664 6799999999999999988 44566889999
Q ss_pred EEEecchhhhhcCcHHHHHHHHHHHhhcCccceEEEEccccCHHHHHHHhhhcCCCEEEEccCCCCcccCccceecCCCc
Q psy15524 546 LVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSL 625 (930)
Q Consensus 546 lVlDEah~l~~~g~~~~l~~i~~~l~~~~~~~q~vl~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 625 (930)
+|+||||+++|+||+..+..|++.||+ ++++-+||||.+..+.++....++||+.+.+..... ...|+.+
T Consensus 161 LVLDEADrLldmgFe~~~n~ILs~LPK---QRRTGLFSATq~~~v~dL~raGLRNpv~V~V~~k~~-------~~tPS~L 230 (567)
T KOG0345|consen 161 LVLDEADRLLDMGFEASVNTILSFLPK---QRRTGLFSATQTQEVEDLARAGLRNPVRVSVKEKSK-------SATPSSL 230 (567)
T ss_pred EEecchHhHhcccHHHHHHHHHHhccc---ccccccccchhhHHHHHHHHhhccCceeeeeccccc-------ccCchhh
Confidence 999999999999999999999999987 899999999999999999999999999998876542 2378899
Q ss_pred eEEEEEcCchhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHHHHHHHHHH
Q psy15524 626 KQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKT 705 (930)
Q Consensus 626 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~v~~~ 705 (930)
...|..|++..|+..+..+|... ..+++|||++||.++++++.++..+++ ...++.+||.|++..|..++++
T Consensus 231 ~~~Y~v~~a~eK~~~lv~~L~~~-------~~kK~iVFF~TCasVeYf~~~~~~~l~-~~~i~~iHGK~~q~~R~k~~~~ 302 (567)
T KOG0345|consen 231 ALEYLVCEADEKLSQLVHLLNNN-------KDKKCIVFFPTCASVEYFGKLFSRLLK-KREIFSIHGKMSQKARAKVLEA 302 (567)
T ss_pred cceeeEecHHHHHHHHHHHHhcc-------ccccEEEEecCcchHHHHHHHHHHHhC-CCcEEEecchhcchhHHHHHHH
Confidence 99999999999999999999763 267999999999999999999998854 6889999999999999999999
Q ss_pred hhcCCCcEEEeccccccccCCCCccEEEEecCCCChhhHHhhhcccccCCCCceEEEEeCcccHHHHHHHHhcCC-ccch
Q psy15524 706 FRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPSEVKLVEELQNRRI-RIEE 784 (930)
Q Consensus 706 F~~~~~~vLv~T~~~~~GlDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~e~~~~~~l~~~~~-~~~~ 784 (930)
|++....+|+|||+++||+|||+|+||||||+|.+++.|+||+|||||+|+.|.+++|+.|+|.+|++.|..++. .+++
T Consensus 303 F~~~~~~vl~~TDVaARGlDip~iD~VvQ~DpP~~~~~FvHR~GRTaR~gr~G~Aivfl~p~E~aYveFl~i~~~v~le~ 382 (567)
T KOG0345|consen 303 FRKLSNGVLFCTDVAARGLDIPGIDLVVQFDPPKDPSSFVHRCGRTARAGREGNAIVFLNPREEAYVEFLRIKGKVELER 382 (567)
T ss_pred HHhccCceEEeehhhhccCCCCCceEEEecCCCCChhHHHhhcchhhhccCccceEEEecccHHHHHHHHHhcCccchhh
Confidence 999888999999999999999999999999999999999999999999999999999999999999999998864 4443
Q ss_pred hchHHHHHhhhhhhccCccccccccchHHHHHHHHHHHHHHHHhcHHHHHHHhhhhHHHHHHhhhcccccccccccccCC
Q psy15524 785 IKLKDCLQNLLSVKMEGDLSRLADGNVETAATALQMSFESAVLQQKILHTSACKGYTSWVRFYASYSKDLRHIFNFKQIH 864 (930)
Q Consensus 785 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~a~~s~~~~y~~~~~~~~~~f~~~~l~ 864 (930)
...+. +...+-..+++++.+|+++++.+.+||+||+|+|+.| .+..||+++.||
T Consensus 383 ~~~e~------------------------~~~~~~~~ir~~~~~DR~~~dkG~kAFVS~VraY~~H--~cs~Ifr~kdLd 436 (567)
T KOG0345|consen 383 IDTEK------------------------ASLSVYQDIRSIISKDRAVLDKGLKAFVSHVRAYKKH--HCSYIFRLKDLD 436 (567)
T ss_pred hcccc------------------------cchhHHHHHHHHhcccHHHHhhhHHHHHHHHHHHhhc--ceeEEEeecCCc
Confidence 32211 1112455778899999999999999999999999999 589999999999
Q ss_pred hHHHHHhcCCCCCCcccc
Q psy15524 865 LGHFAKSFALRDAPSVIS 882 (930)
Q Consensus 865 ~~~~a~sf~l~~~p~~~~ 882 (930)
++.+|.+|||...|++.+
T Consensus 437 ~~~lA~~YgLl~lP~M~E 454 (567)
T KOG0345|consen 437 LGKLATLYGLLRLPKMPE 454 (567)
T ss_pred HHHHHHHHHHHhCCCcHH
Confidence 999999999999999765
|
|
| >KOG0342|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-83 Score=667.78 Aligned_cols=450 Identities=38% Similarity=0.636 Sum_probs=411.6
Q ss_pred cCCCCCCCCCCCCCHHHHHHHHhcCCCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCC
Q psy15524 386 LFAPTSYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKD 465 (930)
Q Consensus 386 ~~~~~~f~~l~~l~~~~~~~l~~~~~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~ 465 (930)
......|+++ .|++...+++. .|||..||++|+.+||.++.|+|+++.|.||||||+||++|+++.+...+.+ ...
T Consensus 78 ~~~~~~f~~~-~LS~~t~kAi~-~~GF~~MT~VQ~~ti~pll~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~--~r~ 153 (543)
T KOG0342|consen 78 ITTTFRFEEG-SLSPLTLKAIK-EMGFETMTPVQQKTIPPLLEGKDVLAAAKTGTGKTLAFLLPAIELLRKLKFK--PRN 153 (543)
T ss_pred hhhhhHhhcc-ccCHHHHHHHH-hcCccchhHHHHhhcCccCCCccceeeeccCCCceeeehhHHHHHHHhcccC--CCC
Confidence 4445678888 89999999998 4999999999999999999999999999999999999999999999876544 347
Q ss_pred CeeEEEEccCHHHHHHHHHHHHHhhccCCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhccCCcccccceE
Q psy15524 466 GIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEH 545 (930)
Q Consensus 466 ~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~ 545 (930)
+..++||+||||||.|++.+++++........++.+.||.+...+..++.++++|+|+|||||++|+.++..+.++++++
T Consensus 154 ~~~vlIi~PTRELA~Q~~~eak~Ll~~h~~~~v~~viGG~~~~~e~~kl~k~~niliATPGRLlDHlqNt~~f~~r~~k~ 233 (543)
T KOG0342|consen 154 GTGVLIICPTRELAMQIFAEAKELLKYHESITVGIVIGGNNFSVEADKLVKGCNILIATPGRLLDHLQNTSGFLFRNLKC 233 (543)
T ss_pred CeeEEEecccHHHHHHHHHHHHHHHhhCCCcceEEEeCCccchHHHHHhhccccEEEeCCchHHhHhhcCCcchhhccce
Confidence 89999999999999999999999998876778899999999999999999999999999999999999999988999999
Q ss_pred EEEecchhhhhcCcHHHHHHHHHHHhhcCccceEEEEccccCHHHHHHHhhhcC-CCEEEEccCCCCcccCccceecCCC
Q psy15524 546 LVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQ-NPIQIDAADSTDIHNTTDSLVIPDS 624 (930)
Q Consensus 546 lVlDEah~l~~~g~~~~l~~i~~~l~~~~~~~q~vl~SAT~~~~~~~l~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~ 624 (930)
+|+||||+++++||++.+.+|+..+++ .+|+++||||.++.|++++...+. +|+++++.+... ....+.
T Consensus 234 lvlDEADrlLd~GF~~di~~Ii~~lpk---~rqt~LFSAT~~~kV~~l~~~~L~~d~~~v~~~d~~~-------~~The~ 303 (543)
T KOG0342|consen 234 LVLDEADRLLDIGFEEDVEQIIKILPK---QRQTLLFSATQPSKVKDLARGALKRDPVFVNVDDGGE-------RETHER 303 (543)
T ss_pred eEeecchhhhhcccHHHHHHHHHhccc---cceeeEeeCCCcHHHHHHHHHhhcCCceEeecCCCCC-------cchhhc
Confidence 999999999999999999999999985 899999999999999999998877 489998876543 234578
Q ss_pred ceEEEEEcCchhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHHHHHHHHH
Q psy15524 625 LKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFK 704 (930)
Q Consensus 625 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~v~~ 704 (930)
+.|.|++++...++..+..+|+++.. ..++||||+||..+.+++++|+.+ ++++..+||+++|..|..++.
T Consensus 304 l~Qgyvv~~~~~~f~ll~~~LKk~~~------~~KiiVF~sT~~~vk~~~~lL~~~---dlpv~eiHgk~~Q~kRT~~~~ 374 (543)
T KOG0342|consen 304 LEQGYVVAPSDSRFSLLYTFLKKNIK------RYKIIVFFSTCMSVKFHAELLNYI---DLPVLEIHGKQKQNKRTSTFF 374 (543)
T ss_pred ccceEEeccccchHHHHHHHHHHhcC------CceEEEEechhhHHHHHHHHHhhc---CCchhhhhcCCcccccchHHH
Confidence 99999999999999999999987643 489999999999999999999976 889999999999999999999
Q ss_pred HhhcCCCcEEEeccccccccCCCCccEEEEecCCCChhhHHhhhcccccCCCCceEEEEeCcccHHHHHHHHhcCCccch
Q psy15524 705 TFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPSEVKLVEELQNRRIRIEE 784 (930)
Q Consensus 705 ~F~~~~~~vLv~T~~~~~GlDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~e~~~~~~l~~~~~~~~~ 784 (930)
.|++.+..|||||||+|||+|+|+|+||||||+|.++++|+||+|||||.|+.|.+++|+.|+|..|+++|+ .+|+++
T Consensus 375 ~F~kaesgIL~cTDVaARGlD~P~V~~VvQ~~~P~d~~~YIHRvGRTaR~gk~G~alL~l~p~El~Flr~LK--~lpl~~ 452 (543)
T KOG0342|consen 375 EFCKAESGILVCTDVAARGLDIPDVDWVVQYDPPSDPEQYIHRVGRTAREGKEGKALLLLAPWELGFLRYLK--KLPLEE 452 (543)
T ss_pred HHhhcccceEEecchhhccCCCCCceEEEEeCCCCCHHHHHHHhccccccCCCceEEEEeChhHHHHHHHHh--hCCCcc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999 677777
Q ss_pred hchHHHHHhhhhhhccCccccccccchHHHHHHHHHHHHHHHHhcHHHHHHHhhhhHHHHHHhhhcccccccccccccCC
Q psy15524 785 IKLKDCLQNLLSVKMEGDLSRLADGNVETAATALQMSFESAVLQQKILHTSACKGYTSWVRFYASYSKDLRHIFNFKQIH 864 (930)
Q Consensus 785 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~a~~s~~~~y~~~~~~~~~~f~~~~l~ 864 (930)
.++... ..+.+|...++++.++..+.+.|..||.||+++|.+|+ ++.+|++..++
T Consensus 453 ~e~~~~-----------------------~~~~v~~~~~~li~~~y~~~~aak~ay~syl~~y~s~s--lk~~~~~~~l~ 507 (543)
T KOG0342|consen 453 FEFPPL-----------------------KPEDVQSQLEKLISKNYSLKEAAKEAYKSYLGAYNSHS--LKDIFNVNLLE 507 (543)
T ss_pred cCCCCC-----------------------CHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhccchh--hhcccccchhh
Confidence 655321 12467888899999999999999999999999999994 99999999999
Q ss_pred hHHHHHhcCCCCCCcccccCC
Q psy15524 865 LGHFAKSFALRDAPSVISGIG 885 (930)
Q Consensus 865 ~~~~a~sf~l~~~p~~~~~~~ 885 (930)
|..+|+|||+..||.+.-..+
T Consensus 508 La~~~~s~gf~~pp~v~~~i~ 528 (543)
T KOG0342|consen 508 LAAVAKSFGFSVPPAVDLKID 528 (543)
T ss_pred HHHHHHHcCCCCCccceeecc
Confidence 999999999999999876553
|
|
| >KOG0343|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-82 Score=660.65 Aligned_cols=448 Identities=36% Similarity=0.598 Sum_probs=411.9
Q ss_pred CCCCCCCCCCCHHHHHHHHhcCCCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCee
Q psy15524 389 PTSYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIY 468 (930)
Q Consensus 389 ~~~f~~l~~l~~~~~~~l~~~~~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~ 468 (930)
...|++| .|+..+.++|.+ -+|..||.+|+++||..++|+|++..|.|||||||||++|++++|++ .+|+..+|..
T Consensus 68 ~~kF~dl-pls~~t~kgLke-~~fv~~teiQ~~~Ip~aL~G~DvlGAAkTGSGKTLAFlvPvlE~L~r--~kWs~~DGlG 143 (758)
T KOG0343|consen 68 IKKFADL-PLSQKTLKGLKE-AKFVKMTEIQRDTIPMALQGHDVLGAAKTGSGKTLAFLVPVLEALYR--LKWSPTDGLG 143 (758)
T ss_pred hhhHHhC-CCchHHHHhHhh-cCCccHHHHHHhhcchhccCcccccccccCCCceeeehHHHHHHHHH--cCCCCCCCce
Confidence 3579999 899999999986 69999999999999999999999999999999999999999999986 5688899999
Q ss_pred EEEEccCHHHHHHHHHHHHHhhccCCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhccCCcccccceEEEE
Q psy15524 469 AVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVL 548 (930)
Q Consensus 469 ~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVl 548 (930)
||||+||||||.|+++++.+.+.. ..+.+++++||.+...+..++. +++|+|||||||++|+..+..++..++.++|+
T Consensus 144 alIISPTRELA~QtFevL~kvgk~-h~fSaGLiiGG~~~k~E~eRi~-~mNILVCTPGRLLQHmde~~~f~t~~lQmLvL 221 (758)
T KOG0343|consen 144 ALIISPTRELALQTFEVLNKVGKH-HDFSAGLIIGGKDVKFELERIS-QMNILVCTPGRLLQHMDENPNFSTSNLQMLVL 221 (758)
T ss_pred eEEecchHHHHHHHHHHHHHHhhc-cccccceeecCchhHHHHHhhh-cCCeEEechHHHHHHhhhcCCCCCCcceEEEe
Confidence 999999999999999999999875 4578899999999888887775 69999999999999999999999999999999
Q ss_pred ecchhhhhcCcHHHHHHHHHHHhhcCccceEEEEccccCHHHHHHHhhhcCCCEEEEccCCCCcccCccceecCCCceEE
Q psy15524 549 DEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQH 628 (930)
Q Consensus 549 DEah~l~~~g~~~~l~~i~~~l~~~~~~~q~vl~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 628 (930)
||||+++||||...+..|++.++. .+|+++||||.+..+.++++..+.||.+|.+.... ....|..+.|.
T Consensus 222 DEADR~LDMGFk~tL~~Ii~~lP~---~RQTLLFSATqt~svkdLaRLsL~dP~~vsvhe~a-------~~atP~~L~Q~ 291 (758)
T KOG0343|consen 222 DEADRMLDMGFKKTLNAIIENLPK---KRQTLLFSATQTKSVKDLARLSLKDPVYVSVHENA-------VAATPSNLQQS 291 (758)
T ss_pred ccHHHHHHHhHHHHHHHHHHhCCh---hheeeeeecccchhHHHHHHhhcCCCcEEEEeccc-------cccChhhhhhe
Confidence 999999999999999999999986 89999999999999999999999999999987432 24678999999
Q ss_pred EEEcCchhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHHHHHHHHHHhhc
Q psy15524 629 FIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRS 708 (930)
Q Consensus 629 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~v~~~F~~ 708 (930)
|+.++...|+..|..++..+. ..++|||++||+++.++++.|+++ .+|++++.+||+|+|..|.+++..|..
T Consensus 292 y~~v~l~~Ki~~L~sFI~shl-------k~K~iVF~SscKqvkf~~e~F~rl-rpg~~l~~L~G~~~Q~~R~ev~~~F~~ 363 (758)
T KOG0343|consen 292 YVIVPLEDKIDMLWSFIKSHL-------KKKSIVFLSSCKQVKFLYEAFCRL-RPGIPLLALHGTMSQKKRIEVYKKFVR 363 (758)
T ss_pred EEEEehhhHHHHHHHHHHhcc-------ccceEEEEehhhHHHHHHHHHHhc-CCCCceeeeccchhHHHHHHHHHHHHH
Confidence 999999999999999998764 679999999999999999999986 459999999999999999999999999
Q ss_pred CCCcEEEeccccccccCCCCccEEEEecCCCChhhHHhhhcccccCCCCceEEEEeCccc-HHHHHHHHhcCCccchhch
Q psy15524 709 VKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPSE-VKLVEELQNRRIRIEEIKL 787 (930)
Q Consensus 709 ~~~~vLv~T~~~~~GlDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~e-~~~~~~l~~~~~~~~~~~~ 787 (930)
.+..||+|||+++||+|||+|+||||+|+|.++++|+||+||++|.+..|.|+++++|+| ..++..|++++|++++..+
T Consensus 364 ~~~~vLF~TDv~aRGLDFpaVdwViQ~DCPedv~tYIHRvGRtAR~~~~G~sll~L~psEeE~~l~~Lq~k~I~i~~i~i 443 (758)
T KOG0343|consen 364 KRAVVLFCTDVAARGLDFPAVDWVIQVDCPEDVDTYIHRVGRTARYKERGESLLMLTPSEEEAMLKKLQKKKIPIKEIKI 443 (758)
T ss_pred hcceEEEeehhhhccCCCcccceEEEecCchhHHHHHHHhhhhhcccCCCceEEEEcchhHHHHHHHHHHcCCCHHhhcc
Confidence 999999999999999999999999999999999999999999999999999999999999 6689999999999887765
Q ss_pred HHHHHhhhhhhccCccccccccchHHHHHHHHHHHHHHHHhcHHHHHHHhhhhHHHHHHhhhcccccccccccccCChHH
Q psy15524 788 KDCLQNLLSVKMEGDLSRLADGNVETAATALQMSFESAVLQQKILHTSACKGYTSWVRFYASYSKDLRHIFNFKQIHLGH 867 (930)
Q Consensus 788 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~a~~s~~~~y~~~~~~~~~~f~~~~l~~~~ 867 (930)
++ +....++..++.++.++++|.+.|++||+||+|+.... ..+.+|++..+++..
T Consensus 444 ~~-----------------------~k~~~i~~~l~~ll~~~~eLk~~aqka~isY~rsi~~~--rdK~~f~~~~l~~~a 498 (758)
T KOG0343|consen 444 DP-----------------------EKLTSIRNKLEALLAKDPELKEYAQKAFISYLRSIYLM--RDKRVFDVEKLDIEA 498 (758)
T ss_pred CH-----------------------HHhhhHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHhh--ccchhhcchhccHHH
Confidence 42 12345788889999999999999999999999976554 368999999999999
Q ss_pred HHHhcCCCCCCcccccCC
Q psy15524 868 FAKSFALRDAPSVISGIG 885 (930)
Q Consensus 868 ~a~sf~l~~~p~~~~~~~ 885 (930)
+|.||||...|+.+....
T Consensus 499 fa~s~Gl~~~p~~~~~l~ 516 (758)
T KOG0343|consen 499 FADSLGLPGTPRIVRFLN 516 (758)
T ss_pred HHHhcCCCCCchhccchh
Confidence 999999999999766543
|
|
| >KOG0330|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-71 Score=559.68 Aligned_cols=358 Identities=36% Similarity=0.596 Sum_probs=333.6
Q ss_pred CCCCCCCCCCCHHHHHHHHhcCCCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCee
Q psy15524 389 PTSYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIY 468 (930)
Q Consensus 389 ~~~f~~l~~l~~~~~~~l~~~~~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~ 468 (930)
..+|.++ +++|.+++++++ .|++.||+||+++||.++.|+|+|..|.||||||.+|++|++++|+.. ....+
T Consensus 60 ~~sf~dL-gv~~~L~~ac~~-l~~~~PT~IQ~~aiP~~L~g~dvIglAeTGSGKT~afaLPIl~~LL~~------p~~~~ 131 (476)
T KOG0330|consen 60 FKSFADL-GVHPELLEACQE-LGWKKPTKIQSEAIPVALGGRDVIGLAETGSGKTGAFALPILQRLLQE------PKLFF 131 (476)
T ss_pred hcchhhc-CcCHHHHHHHHH-hCcCCCchhhhhhcchhhCCCcEEEEeccCCCchhhhHHHHHHHHHcC------CCCce
Confidence 3579999 999999999985 799999999999999999999999999999999999999999999873 33589
Q ss_pred EEEEccCHHHHHHHHHHHHHhhccCCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhccCCcccccceEEEE
Q psy15524 469 AVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVL 548 (930)
Q Consensus 469 ~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVl 548 (930)
++|++||||||.|+.+.+..++...+ +.+.++.||.+...+...+.+.++|+|+|||||.+|+.+++.++++.++++|+
T Consensus 132 ~lVLtPtRELA~QI~e~fe~Lg~~ig-lr~~~lvGG~~m~~q~~~L~kkPhilVaTPGrL~dhl~~Tkgf~le~lk~LVl 210 (476)
T KOG0330|consen 132 ALVLTPTRELAQQIAEQFEALGSGIG-LRVAVLVGGMDMMLQANQLSKKPHILVATPGRLWDHLENTKGFSLEQLKFLVL 210 (476)
T ss_pred EEEecCcHHHHHHHHHHHHHhccccC-eEEEEEecCchHHHHHHHhhcCCCEEEeCcHHHHHHHHhccCccHHHhHHHhh
Confidence 99999999999999999999988766 45677899999999999999999999999999999999999999999999999
Q ss_pred ecchhhhhcCcHHHHHHHHHHHhhcCccceEEEEccccCHHHHHHHhhhcCCCEEEEccCCCCcccCccceecCCCceEE
Q psy15524 549 DEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQH 628 (930)
Q Consensus 549 DEah~l~~~g~~~~l~~i~~~l~~~~~~~q~vl~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 628 (930)
||||+++++.|...+..|++.++. .+|+++||||+|..+..+....+.+|+.+.+... +.+-+.+.|.
T Consensus 211 DEADrlLd~dF~~~ld~ILk~ip~---erqt~LfsATMt~kv~kL~rasl~~p~~v~~s~k---------y~tv~~lkQ~ 278 (476)
T KOG0330|consen 211 DEADRLLDMDFEEELDYILKVIPR---ERQTFLFSATMTKKVRKLQRASLDNPVKVAVSSK---------YQTVDHLKQT 278 (476)
T ss_pred chHHhhhhhhhHHHHHHHHHhcCc---cceEEEEEeecchhhHHHHhhccCCCeEEeccch---------hcchHHhhhh
Confidence 999999999999999999999874 8999999999999999999999999999887554 2344678999
Q ss_pred EEEcCchhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHHHHHHHHHHhhc
Q psy15524 629 FIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRS 708 (930)
Q Consensus 629 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~v~~~F~~ 708 (930)
|..++.+.|...|..++.... +..+||||+||..+++++-+|..+ |+....+||.|++..|...++.|++
T Consensus 279 ylfv~~k~K~~yLV~ll~e~~-------g~s~iVF~~t~~tt~~la~~L~~l---g~~a~~LhGqmsq~~Rlg~l~~Fk~ 348 (476)
T KOG0330|consen 279 YLFVPGKDKDTYLVYLLNELA-------GNSVIVFCNTCNTTRFLALLLRNL---GFQAIPLHGQMSQSKRLGALNKFKA 348 (476)
T ss_pred eEeccccccchhHHHHHHhhc-------CCcEEEEEeccchHHHHHHHHHhc---CcceecccchhhHHHHHHHHHHHhc
Confidence 999999999999999887542 679999999999999999999987 8999999999999999999999999
Q ss_pred CCCcEEEeccccccccCCCCccEEEEecCCCChhhHHhhhcccccCCCCceEEEEeCcccHHHHHHHHh
Q psy15524 709 VKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPSEVKLVEELQN 777 (930)
Q Consensus 709 ~~~~vLv~T~~~~~GlDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~e~~~~~~l~~ 777 (930)
|..+||||||+++||+|+|.|++|||||+|.+..+|+||+||+||+|++|.++.+++..|.+.+.+++.
T Consensus 349 ~~r~iLv~TDVaSRGLDip~Vd~VVNyDiP~~skDYIHRvGRtaRaGrsG~~ItlVtqyDve~~qrIE~ 417 (476)
T KOG0330|consen 349 GARSILVCTDVASRGLDIPHVDVVVNYDIPTHSKDYIHRVGRTARAGRSGKAITLVTQYDVELVQRIEH 417 (476)
T ss_pred cCCcEEEecchhcccCCCCCceEEEecCCCCcHHHHHHHcccccccCCCcceEEEEehhhhHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999998888865
|
|
| >KOG0331|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-67 Score=569.69 Aligned_cols=367 Identities=37% Similarity=0.575 Sum_probs=332.9
Q ss_pred CCCCCCCCCHHHHHHHHhcCCCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEE
Q psy15524 391 SYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAV 470 (930)
Q Consensus 391 ~f~~l~~l~~~~~~~l~~~~~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~l 470 (930)
.|+++ +|++++...+.. .||+.|||||.++||.++.|+|++..|.|||||||+|++|++.++........+.+++.+|
T Consensus 92 ~f~~~-~ls~~~~~~lk~-~g~~~PtpIQaq~wp~~l~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~vL 169 (519)
T KOG0331|consen 92 AFQEL-GLSEELMKALKE-QGFEKPTPIQAQGWPIALSGRDLVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPIVL 169 (519)
T ss_pred hhhcc-cccHHHHHHHHh-cCCCCCchhhhcccceeccCCceEEEeccCCcchhhhhhHHHHHHHhccccccCCCCCeEE
Confidence 78899 899999999974 7999999999999999999999999999999999999999999998755556678899999
Q ss_pred EEccCHHHHHHHHHHHHHhhccCCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhccCCcccccceEEEEec
Q psy15524 471 IILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDE 550 (930)
Q Consensus 471 il~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlDE 550 (930)
||+||||||.|+.+++.+++.... +...|++||.....+...+.++++|+|+|||||.+++.. ....++++.++|+||
T Consensus 170 VL~PTRELA~QV~~~~~~~~~~~~-~~~~cvyGG~~~~~Q~~~l~~gvdiviaTPGRl~d~le~-g~~~l~~v~ylVLDE 247 (519)
T KOG0331|consen 170 VLAPTRELAVQVQAEAREFGKSLR-LRSTCVYGGAPKGPQLRDLERGVDVVIATPGRLIDLLEE-GSLNLSRVTYLVLDE 247 (519)
T ss_pred EEcCcHHHHHHHHHHHHHHcCCCC-ccEEEEeCCCCccHHHHHHhcCCcEEEeCChHHHHHHHc-CCccccceeEEEecc
Confidence 999999999999999999998766 567889999999999999999999999999999999987 678899999999999
Q ss_pred chhhhhcCcHHHHHHHHHHHhhcCccceEEEEccccCHHHHHHHhhhcCCCEEEEccCCCCcccCccceecCCCceEEEE
Q psy15524 551 ADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFI 630 (930)
Q Consensus 551 ah~l~~~g~~~~l~~i~~~l~~~~~~~q~vl~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 630 (930)
||+|+++||++++..|+..++. +.+|++++|||+|..+..++..++.+|..+.+..... ......+.|...
T Consensus 248 ADrMldmGFe~qI~~Il~~i~~--~~rQtlm~saTwp~~v~~lA~~fl~~~~~i~ig~~~~-------~~a~~~i~qive 318 (519)
T KOG0331|consen 248 ADRMLDMGFEPQIRKILSQIPR--PDRQTLMFSATWPKEVRQLAEDFLNNPIQINVGNKKE-------LKANHNIRQIVE 318 (519)
T ss_pred HHhhhccccHHHHHHHHHhcCC--CcccEEEEeeeccHHHHHHHHHHhcCceEEEecchhh-------hhhhcchhhhhh
Confidence 9999999999999999999854 3559999999999999999999999999998875431 122356778888
Q ss_pred EcCchhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHHHHHHHHHHhhcCC
Q psy15524 631 VTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSVK 710 (930)
Q Consensus 631 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~v~~~F~~~~ 710 (930)
.++...|...+...|.... ....+|+||||.|+..|+.+...+... ++.+..+||+.+|.+|..+++.|++|+
T Consensus 319 ~~~~~~K~~~l~~lL~~~~----~~~~~KvIIFc~tkr~~~~l~~~l~~~---~~~a~~iHGd~sQ~eR~~~L~~FreG~ 391 (519)
T KOG0331|consen 319 VCDETAKLRKLGKLLEDIS----SDSEGKVIIFCETKRTCDELARNLRRK---GWPAVAIHGDKSQSERDWVLKGFREGK 391 (519)
T ss_pred hcCHHHHHHHHHHHHHHHh----ccCCCcEEEEecchhhHHHHHHHHHhc---CcceeeecccccHHHHHHHHHhcccCC
Confidence 8888888888888888765 223789999999999999999999874 578999999999999999999999999
Q ss_pred CcEEEeccccccccCCCCccEEEEecCCCChhhHHhhhcccccCCCCceEEEEeCcccHHHHHHHHh
Q psy15524 711 SGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPSEVKLVEELQN 777 (930)
Q Consensus 711 ~~vLv~T~~~~~GlDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~e~~~~~~l~~ 777 (930)
..||||||+|+||||+|+|++|||||+|.+.++|+||+|||||+|+.|.++.|++..+......+.+
T Consensus 392 ~~vLVATdVAaRGLDi~dV~lVInydfP~~vEdYVHRiGRTGRa~~~G~A~tfft~~~~~~a~~l~~ 458 (519)
T KOG0331|consen 392 SPVLVATDVAARGLDVPDVDLVINYDFPNNVEDYVHRIGRTGRAGKKGTAITFFTSDNAKLARELIK 458 (519)
T ss_pred cceEEEcccccccCCCccccEEEeCCCCCCHHHHHhhcCccccCCCCceEEEEEeHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999998877666643
|
|
| >KOG0338|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-66 Score=535.45 Aligned_cols=361 Identities=34% Similarity=0.546 Sum_probs=326.6
Q ss_pred CCCCCCCCCCHHHHHHHHhcCCCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeE
Q psy15524 390 TSYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYA 469 (930)
Q Consensus 390 ~~f~~l~~l~~~~~~~l~~~~~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~ 469 (930)
.+|.++ +|+..+++++. .+||..|||||..+||..+.|+|++.+|.||||||.+|++|++++|.-... +-...++
T Consensus 181 ~sF~~m-NLSRPlLka~~-~lGy~~PTpIQ~a~IPvallgkDIca~A~TGsGKTAAF~lPiLERLlYrPk---~~~~TRV 255 (691)
T KOG0338|consen 181 ESFQSM-NLSRPLLKACS-TLGYKKPTPIQVATIPVALLGKDICACAATGSGKTAAFALPILERLLYRPK---KVAATRV 255 (691)
T ss_pred hhHHhc-ccchHHHHHHH-hcCCCCCCchhhhcccHHhhcchhhheecccCCchhhhHHHHHHHHhcCcc---cCcceeE
Confidence 479999 99999999997 699999999999999999999999999999999999999999999876322 2457899
Q ss_pred EEEccCHHHHHHHHHHHHHhhccCCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhccCCcccccceEEEEe
Q psy15524 470 VIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLD 549 (930)
Q Consensus 470 lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlD 549 (930)
|||+||||||.|++.+.+++... ..+.+++..||-+.+.+...++.++||+|+|||||.+|+++...++++++.++|+|
T Consensus 256 LVL~PTRELaiQv~sV~~qlaqF-t~I~~~L~vGGL~lk~QE~~LRs~PDIVIATPGRlIDHlrNs~sf~ldsiEVLvlD 334 (691)
T KOG0338|consen 256 LVLVPTRELAIQVHSVTKQLAQF-TDITVGLAVGGLDLKAQEAVLRSRPDIVIATPGRLIDHLRNSPSFNLDSIEVLVLD 334 (691)
T ss_pred EEEeccHHHHHHHHHHHHHHHhh-ccceeeeeecCccHHHHHHHHhhCCCEEEecchhHHHHhccCCCccccceeEEEec
Confidence 99999999999999999998864 55888999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhhcCcHHHHHHHHHHHhhcCccceEEEEccccCHHHHHHHhhhcCCCEEEEccCCCCcccCccceecCCCceEEE
Q psy15524 550 EADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHF 629 (930)
Q Consensus 550 Eah~l~~~g~~~~l~~i~~~l~~~~~~~q~vl~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 629 (930)
|||||++.||...+..|+..+++ ++|++|||||++..+.++++..+++|+.|.+.+... .+..+.|.|
T Consensus 335 EADRMLeegFademnEii~lcpk---~RQTmLFSATMteeVkdL~slSL~kPvrifvd~~~~---------~a~~LtQEF 402 (691)
T KOG0338|consen 335 EADRMLEEGFADEMNEIIRLCPK---NRQTMLFSATMTEEVKDLASLSLNKPVRIFVDPNKD---------TAPKLTQEF 402 (691)
T ss_pred hHHHHHHHHHHHHHHHHHHhccc---cccceeehhhhHHHHHHHHHhhcCCCeEEEeCCccc---------cchhhhHHH
Confidence 99999999999999999999987 899999999999999999999999999998876543 335677777
Q ss_pred EEcCch---hhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHHHHHHHHHHh
Q psy15524 630 IVTPPK---LRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTF 706 (930)
Q Consensus 630 ~~~~~~---~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~v~~~F 706 (930)
+.+.+. .+-..+..++.... ...+|||+.|.+.+..+.-+|.-+ |+.+..+||+++|.+|...++.|
T Consensus 403 iRIR~~re~dRea~l~~l~~rtf-------~~~~ivFv~tKk~AHRl~IllGLl---gl~agElHGsLtQ~QRlesL~kF 472 (691)
T KOG0338|consen 403 IRIRPKREGDREAMLASLITRTF-------QDRTIVFVRTKKQAHRLRILLGLL---GLKAGELHGSLTQEQRLESLEKF 472 (691)
T ss_pred heeccccccccHHHHHHHHHHhc-------ccceEEEEehHHHHHHHHHHHHHh---hchhhhhcccccHHHHHHHHHHH
Confidence 765543 45555555555433 568999999999999998887755 78899999999999999999999
Q ss_pred hcCCCcEEEeccccccccCCCCccEEEEecCCCChhhHHhhhcccccCCCCceEEEEeCcccHHHHHHHHhc
Q psy15524 707 RSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPSEVKLVEELQNR 778 (930)
Q Consensus 707 ~~~~~~vLv~T~~~~~GlDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~e~~~~~~l~~~ 778 (930)
++++++||||||+++||+||++|..||||++|.+...|+||+|||+|+|+.|.++.|+..+|...++.+.+.
T Consensus 473 k~~eidvLiaTDvAsRGLDI~gV~tVINy~mP~t~e~Y~HRVGRTARAGRaGrsVtlvgE~dRkllK~iik~ 544 (691)
T KOG0338|consen 473 KKEEIDVLIATDVASRGLDIEGVQTVINYAMPKTIEHYLHRVGRTARAGRAGRSVTLVGESDRKLLKEIIKS 544 (691)
T ss_pred HhccCCEEEEechhhccCCccceeEEEeccCchhHHHHHHHhhhhhhcccCcceEEEeccccHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999999999999999999999998887654
|
|
| >KOG0340|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-63 Score=497.16 Aligned_cols=372 Identities=33% Similarity=0.552 Sum_probs=330.6
Q ss_pred CCCCCCCCCCCCHHHHHHHHhcCCCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCe
Q psy15524 388 APTSYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGI 467 (930)
Q Consensus 388 ~~~~f~~l~~l~~~~~~~l~~~~~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~ 467 (930)
+...|+.| ||++|+.+.|+ .+|+..|||+|..+||.++.|+|++.+|.||||||.+|.+|+++++.. ...|.
T Consensus 5 t~~~F~~L-Gl~~Wlve~l~-~l~i~~pTpiQ~~cIpkILeGrdcig~AkTGsGKT~AFaLPil~rLse------dP~gi 76 (442)
T KOG0340|consen 5 TAKPFSIL-GLSPWLVEQLK-ALGIKKPTPIQQACIPKILEGRDCIGCAKTGSGKTAAFALPILNRLSE------DPYGI 76 (442)
T ss_pred ccCchhhc-CccHHHHHHHH-HhcCCCCCchHhhhhHHHhcccccccccccCCCcchhhhHHHHHhhcc------CCCcc
Confidence 34679999 99999999998 499999999999999999999999999999999999999999999976 34688
Q ss_pred eEEEEccCHHHHHHHHHHHHHhhccCCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhcc---CCcccccce
Q psy15524 468 YAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHT---ETLKFSKVE 544 (930)
Q Consensus 468 ~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~---~~~~~~~l~ 544 (930)
.++|++||||||.|+.+.|..+++..+ +.+..++||.+.-.+...+...++++|+||||+.+|+... -.+.+++++
T Consensus 77 FalvlTPTrELA~QiaEQF~alGk~l~-lK~~vivGG~d~i~qa~~L~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlk 155 (442)
T KOG0340|consen 77 FALVLTPTRELALQIAEQFIALGKLLN-LKVSVIVGGTDMIMQAAILSDRPHVVVATPGRLADHLSSNLGVCSWIFQRLK 155 (442)
T ss_pred eEEEecchHHHHHHHHHHHHHhccccc-ceEEEEEccHHHhhhhhhcccCCCeEecCccccccccccCCccchhhhhcee
Confidence 999999999999999999999887655 5678899999998898999999999999999999999886 345689999
Q ss_pred EEEEecchhhhhcCcHHHHHHHHHHHhhcCccceEEEEccccCHHHHHHHhhhcCCCEEEEccCCCCcccCccceecCCC
Q psy15524 545 HLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDS 624 (930)
Q Consensus 545 ~lVlDEah~l~~~g~~~~l~~i~~~l~~~~~~~q~vl~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 624 (930)
++|+||||++++..|.+.++.+.+.++. .+|+++||||+++.+..+.......+...... ..+...+++.
T Consensus 156 flVlDEADrvL~~~f~d~L~~i~e~lP~---~RQtLlfSATitd~i~ql~~~~i~k~~a~~~e-------~~~~vstvet 225 (442)
T KOG0340|consen 156 FLVLDEADRVLAGCFPDILEGIEECLPK---PRQTLLFSATITDTIKQLFGCPITKSIAFELE-------VIDGVSTVET 225 (442)
T ss_pred eEEecchhhhhccchhhHHhhhhccCCC---ccceEEEEeehhhHHHHhhcCCcccccceEEe-------ccCCCCchhh
Confidence 9999999999999999999999988876 68999999999999988877666653221111 1123467789
Q ss_pred ceEEEEEcCchhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHHHHHHHHH
Q psy15524 625 LKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFK 704 (930)
Q Consensus 625 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~v~~ 704 (930)
+.|.|+.++.+.+...+...|...... +++.++||++++.+++.++..|..+ ++.+..+|+.|+|.+|...+.
T Consensus 226 L~q~yI~~~~~vkdaYLv~~Lr~~~~~----~~~simIFvnttr~cQ~l~~~l~~l---e~r~~~lHs~m~Q~eR~~aLs 298 (442)
T KOG0340|consen 226 LYQGYILVSIDVKDAYLVHLLRDFENK----ENGSIMIFVNTTRECQLLSMTLKNL---EVRVVSLHSQMPQKERLAALS 298 (442)
T ss_pred hhhheeecchhhhHHHHHHHHhhhhhc----cCceEEEEeehhHHHHHHHHHHhhh---ceeeeehhhcchHHHHHHHHH
Confidence 999999999999999999988865332 3789999999999999999999987 789999999999999999999
Q ss_pred HhhcCCCcEEEeccccccccCCCCccEEEEecCCCChhhHHhhhcccccCCCCceEEEEeCcccHHHHHHHHhc-CCccc
Q psy15524 705 TFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPSEVKLVEELQNR-RIRIE 783 (930)
Q Consensus 705 ~F~~~~~~vLv~T~~~~~GlDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~e~~~~~~l~~~-~~~~~ 783 (930)
+|+++..+||+|||+++||+|||.|++||+||+|.++.+|+||+||++|+|+.|.++.|+++.+.+.+..+++. +-.+.
T Consensus 299 rFrs~~~~iliaTDVAsRGLDIP~V~LVvN~diPr~P~~yiHRvGRtARAGR~G~aiSivt~rDv~l~~aiE~~igkKl~ 378 (442)
T KOG0340|consen 299 RFRSNAARILIATDVASRGLDIPTVELVVNHDIPRDPKDYIHRVGRTARAGRKGMAISIVTQRDVELLQAIEEEIGKKLT 378 (442)
T ss_pred HHhhcCccEEEEechhhcCCCCCceeEEEecCCCCCHHHHHHhhcchhcccCCcceEEEechhhHHHHHHHHHHHhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999888764 33444
Q ss_pred hh
Q psy15524 784 EI 785 (930)
Q Consensus 784 ~~ 785 (930)
+.
T Consensus 379 e~ 380 (442)
T KOG0340|consen 379 EY 380 (442)
T ss_pred cc
Confidence 44
|
|
| >COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-62 Score=561.86 Aligned_cols=362 Identities=35% Similarity=0.578 Sum_probs=325.4
Q ss_pred CCCCCCCCCCHHHHHHHHhcCCCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeE
Q psy15524 390 TSYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYA 469 (930)
Q Consensus 390 ~~f~~l~~l~~~~~~~l~~~~~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~ 469 (930)
..|+++ ++++.+++++.+ +||..|||||.++||.++.|+|++++|+||||||++|++|+++.+... . ......+
T Consensus 29 ~~F~~l-~l~~~ll~~l~~-~gf~~pt~IQ~~~IP~~l~g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~-~---~~~~~~a 102 (513)
T COG0513 29 PEFASL-GLSPELLQALKD-LGFEEPTPIQLAAIPLILAGRDVLGQAQTGTGKTAAFLLPLLQKILKS-V---ERKYVSA 102 (513)
T ss_pred CCHhhc-CCCHHHHHHHHH-cCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhcc-c---ccCCCce
Confidence 469999 899999999986 899999999999999999999999999999999999999999997642 0 1111119
Q ss_pred EEEccCHHHHHHHHHHHHHhhccCCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhccCCcccccceEEEEe
Q psy15524 470 VIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLD 549 (930)
Q Consensus 470 lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlD 549 (930)
||++||||||.|+++.+..+......+.+.+++||.+...+...+..+++|+|+||||+++|+.+. .+.+++++++|+|
T Consensus 103 Lil~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~~~~~ivVaTPGRllD~i~~~-~l~l~~v~~lVlD 181 (513)
T COG0513 103 LILAPTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALKRGVDIVVATPGRLLDLIKRG-KLDLSGVETLVLD 181 (513)
T ss_pred EEECCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHhcCCCEEEECccHHHHHHHcC-CcchhhcCEEEec
Confidence 999999999999999999998876456688899999999998889889999999999999999984 7889999999999
Q ss_pred cchhhhhcCcHHHHHHHHHHHhhcCccceEEEEccccCHHHHHHHhhhcCCCEEEEccCCCCcccCccceecCCCceEEE
Q psy15524 550 EADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHF 629 (930)
Q Consensus 550 Eah~l~~~g~~~~l~~i~~~l~~~~~~~q~vl~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 629 (930)
|||+|+++||.+.+..|+..++. ++|+++||||+|+.+..+++.++.+|..+.+.... ....+..+.|.|
T Consensus 182 EADrmLd~Gf~~~i~~I~~~~p~---~~qtllfSAT~~~~i~~l~~~~l~~p~~i~v~~~~-------~~~~~~~i~q~~ 251 (513)
T COG0513 182 EADRMLDMGFIDDIEKILKALPP---DRQTLLFSATMPDDIRELARRYLNDPVEIEVSVEK-------LERTLKKIKQFY 251 (513)
T ss_pred cHhhhhcCCCHHHHHHHHHhCCc---ccEEEEEecCCCHHHHHHHHHHccCCcEEEEcccc-------ccccccCceEEE
Confidence 99999999999999999999876 89999999999999999999999999988776322 112457789999
Q ss_pred EEcCchh-hHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHHHHHHHHHHhhc
Q psy15524 630 IVTPPKL-RLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRS 708 (930)
Q Consensus 630 ~~~~~~~-~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~v~~~F~~ 708 (930)
+.++... |+..|..++.... ..++||||+|+..++.++..|... |+.+..+||+|+|.+|..+++.|++
T Consensus 252 ~~v~~~~~k~~~L~~ll~~~~-------~~~~IVF~~tk~~~~~l~~~l~~~---g~~~~~lhG~l~q~~R~~~l~~F~~ 321 (513)
T COG0513 252 LEVESEEEKLELLLKLLKDED-------EGRVIVFVRTKRLVEELAESLRKR---GFKVAALHGDLPQEERDRALEKFKD 321 (513)
T ss_pred EEeCCHHHHHHHHHHHHhcCC-------CCeEEEEeCcHHHHHHHHHHHHHC---CCeEEEecCCCCHHHHHHHHHHHHc
Confidence 9999876 8888888876531 347999999999999999999885 8999999999999999999999999
Q ss_pred CCCcEEEeccccccccCCCCccEEEEecCCCChhhHHhhhcccccCCCCceEEEEeCcc-cHHHHHHHHhc
Q psy15524 709 VKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPS-EVKLVEELQNR 778 (930)
Q Consensus 709 ~~~~vLv~T~~~~~GlDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~-e~~~~~~l~~~ 778 (930)
|+.+||||||+++||||+|+|++|||||.|.++++|+||+|||||+|..|.++.|+.+. |..++..+++.
T Consensus 322 g~~~vLVaTDvaaRGiDi~~v~~VinyD~p~~~e~yvHRiGRTgRaG~~G~ai~fv~~~~e~~~l~~ie~~ 392 (513)
T COG0513 322 GELRVLVATDVAARGLDIPDVSHVINYDLPLDPEDYVHRIGRTGRAGRKGVAISFVTEEEEVKKLKRIEKR 392 (513)
T ss_pred CCCCEEEEechhhccCCccccceeEEccCCCCHHHheeccCccccCCCCCeEEEEeCcHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999986 78888887764
|
|
| >KOG0333|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-62 Score=511.60 Aligned_cols=384 Identities=30% Similarity=0.498 Sum_probs=337.9
Q ss_pred ccccCCCCCCCCCCCCCCCCccccCCCCCCCCCCCCCHHHHHHHHhcCCCCCCCHHHHHhHHhhhcCCcEEEEccCCCch
Q psy15524 363 SLFQNNPDIPNVPTRRLKPVSEALFAPTSYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGK 442 (930)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~l~~l~~~~~~~l~~~~~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGK 442 (930)
.+|...-.+...+...+.|. .+|++. ++|.++++.+. ..||..|||||.+|||..++.+|+|..|.|||||
T Consensus 225 ri~redynis~kg~~lpnpl-------rnwEE~-~~P~e~l~~I~-~~~y~eptpIqR~aipl~lQ~rD~igvaETgsGk 295 (673)
T KOG0333|consen 225 RIFREDYNISIKGGRLPNPL-------RNWEES-GFPLELLSVIK-KPGYKEPTPIQRQAIPLGLQNRDPIGVAETGSGK 295 (673)
T ss_pred eeeecceeeeecCCCCCccc-------cChhhc-CCCHHHHHHHH-hcCCCCCchHHHhhccchhccCCeeeEEeccCCc
Confidence 34555555555555555555 369998 89999999886 5899999999999999999999999999999999
Q ss_pred hHHhhHHHHHHHHhhCcc---cCCCCCeeEEEEccCHHHHHHHHHHHHHhhccCCCcceEEEeCCCchHHHHHHHhcCCc
Q psy15524 443 TLAYAIPIIQKLQEMRPK---ISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGIS 519 (930)
Q Consensus 443 Tl~~~lp~l~~l~~~~~~---~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~ 519 (930)
|++|++|++..+.+..+- .....|++++|++||||||+|+.++-.+++...+ +.+..+.||.+...+--.+..||+
T Consensus 296 taaf~ipLl~~IsslP~~~~~en~~~gpyaiilaptReLaqqIeeEt~kf~~~lg-~r~vsvigg~s~EEq~fqls~gce 374 (673)
T KOG0333|consen 296 TAAFLIPLLIWISSLPPMARLENNIEGPYAIILAPTRELAQQIEEETNKFGKPLG-IRTVSVIGGLSFEEQGFQLSMGCE 374 (673)
T ss_pred cccchhhHHHHHHcCCCcchhhhcccCceeeeechHHHHHHHHHHHHHHhccccc-ceEEEEecccchhhhhhhhhccce
Confidence 999999999988765421 1345799999999999999999999999998777 556678899988888778899999
Q ss_pred EEEECchhHHHhhhccCCcccccceEEEEecchhhhhcCcHHHHHHHHHHHhhcCc----------------------cc
Q psy15524 520 ILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKP----------------------QF 577 (930)
Q Consensus 520 Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~l~~~g~~~~l~~i~~~l~~~~~----------------------~~ 577 (930)
|+|+|||||++.+.+ ..+.++++.++|+||||+|+|+||++++..++..++.... -+
T Consensus 375 iviatPgrLid~Len-r~lvl~qctyvvldeadrmiDmgfE~dv~~iL~~mPssn~k~~tde~~~~~~~~~~~~~~k~yr 453 (673)
T KOG0333|consen 375 IVIATPGRLIDSLEN-RYLVLNQCTYVVLDEADRMIDMGFEPDVQKILEQMPSSNAKPDTDEKEGEERVRKNFSSSKKYR 453 (673)
T ss_pred eeecCchHHHHHHHH-HHHHhccCceEeccchhhhhcccccHHHHHHHHhCCccccCCCccchhhHHHHHhhccccccee
Confidence 999999999999987 5677899999999999999999999999999999985322 18
Q ss_pred eEEEEccccCHHHHHHHhhhcCCCEEEEccCCCCcccCccceecCCCceEEEEEcCchhhHHHHHHHHHhhccCCCcCCC
Q psy15524 578 QSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEE 657 (930)
Q Consensus 578 q~vl~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~ 657 (930)
|+++||||+|+.+..+++.++++|+.+.+...... ...+.|.++.++.+.+...|...+.... .
T Consensus 454 qT~mftatm~p~verlar~ylr~pv~vtig~~gk~---------~~rveQ~v~m~~ed~k~kkL~eil~~~~-------~ 517 (673)
T KOG0333|consen 454 QTVMFTATMPPAVERLARSYLRRPVVVTIGSAGKP---------TPRVEQKVEMVSEDEKRKKLIEILESNF-------D 517 (673)
T ss_pred EEEEEecCCChHHHHHHHHHhhCCeEEEeccCCCC---------ccchheEEEEecchHHHHHHHHHHHhCC-------C
Confidence 99999999999999999999999999887654322 2457888989999999999999887652 5
Q ss_pred ceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHHHHHHHHHHhhcCCCcEEEeccccccccCCCCccEEEEecC
Q psy15524 658 SKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTA 737 (930)
Q Consensus 658 ~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~v~~~F~~~~~~vLv~T~~~~~GlDip~v~~VI~~~~ 737 (930)
.++|||+++.+.|+.+++.|.+. |+.++.|||+-+|++|+.+++.|++|..+||||||+++||||+|+|++|||||+
T Consensus 518 ppiIIFvN~kk~~d~lAk~LeK~---g~~~~tlHg~k~qeQRe~aL~~fr~~t~dIlVaTDvAgRGIDIpnVSlVinydm 594 (673)
T KOG0333|consen 518 PPIIIFVNTKKGADALAKILEKA---GYKVTTLHGGKSQEQRENALADFREGTGDILVATDVAGRGIDIPNVSLVINYDM 594 (673)
T ss_pred CCEEEEEechhhHHHHHHHHhhc---cceEEEeeCCccHHHHHHHHHHHHhcCCCEEEEecccccCCCCCccceeeecch
Confidence 79999999999999999999986 899999999999999999999999999999999999999999999999999999
Q ss_pred CCChhhHHhhhcccccCCCCceEEEEeCcccHHHHHHHH
Q psy15524 738 PSSSTDYVHRVGRTARVGHEGSSLLFLIPSEVKLVEELQ 776 (930)
Q Consensus 738 p~s~~~y~qr~GRagR~g~~g~~~~~~~~~e~~~~~~l~ 776 (930)
+.++++|+||||||||+|+.|.++.|+++.+...+..|.
T Consensus 595 aksieDYtHRIGRTgRAGk~GtaiSflt~~dt~v~ydLk 633 (673)
T KOG0333|consen 595 AKSIEDYTHRIGRTGRAGKSGTAISFLTPADTAVFYDLK 633 (673)
T ss_pred hhhHHHHHHHhccccccccCceeEEEeccchhHHHHHHH
Confidence 999999999999999999999999999999977555554
|
|
| >KOG0328|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-61 Score=464.28 Aligned_cols=370 Identities=28% Similarity=0.504 Sum_probs=326.6
Q ss_pred ccCCCCCCCCCCCCCHHHHHHHHhcCCCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCC
Q psy15524 385 ALFAPTSYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRK 464 (930)
Q Consensus 385 ~~~~~~~f~~l~~l~~~~~~~l~~~~~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~ 464 (930)
.+....+|++. +|.+++++++.. +||+.|+.+|++|||++++|+|++++|+.|+|||.+|.+.+++.+.- ..
T Consensus 22 ~~~v~~~F~~M-gl~edlLrgiY~-yGfekPS~IQqrAi~~IlkGrdViaQaqSGTGKTa~~si~vlq~~d~------~~ 93 (400)
T KOG0328|consen 22 KVKVIPTFDDM-GLKEDLLRGIYA-YGFEKPSAIQQRAIPQILKGRDVIAQAQSGTGKTATFSISVLQSLDI------SV 93 (400)
T ss_pred Ccccccchhhc-CchHHHHHHHHH-hccCCchHHHhhhhhhhhcccceEEEecCCCCceEEEEeeeeeeccc------cc
Confidence 33444689999 999999999984 89999999999999999999999999999999999999999987653 23
Q ss_pred CCeeEEEEccCHHHHHHHHHHHHHhhccCCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhccCCcccccce
Q psy15524 465 DGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVE 544 (930)
Q Consensus 465 ~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~ 544 (930)
....++|++||||||.|+.+++..++...+. .+....||.+.....+.+..|.+++.+||||+++++++ ..+..+.++
T Consensus 94 r~tQ~lilsPTRELa~Qi~~vi~alg~~mnv-q~hacigg~n~gedikkld~G~hvVsGtPGrv~dmikr-~~L~tr~vk 171 (400)
T KOG0328|consen 94 RETQALILSPTRELAVQIQKVILALGDYMNV-QCHACIGGKNLGEDIKKLDYGQHVVSGTPGRVLDMIKR-RSLRTRAVK 171 (400)
T ss_pred ceeeEEEecChHHHHHHHHHHHHHhcccccc-eEEEEecCCccchhhhhhcccceEeeCCCchHHHHHHh-cccccccee
Confidence 4578999999999999999999999887664 45566788888888888889999999999999999987 667789999
Q ss_pred EEEEecchhhhhcCcHHHHHHHHHHHhhcCccceEEEEccccCHHHHHHHhhhcCCCEEEEccCCCCcccCccceecCCC
Q psy15524 545 HLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDS 624 (930)
Q Consensus 545 ~lVlDEah~l~~~g~~~~l~~i~~~l~~~~~~~q~vl~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 624 (930)
++|+||||.+++.||..++..|.+.++ +..|++++|||+|.++.++...++.+|+.+-+..... ..+.
T Consensus 172 mlVLDEaDemL~kgfk~Qiydiyr~lp---~~~Qvv~~SATlp~eilemt~kfmtdpvrilvkrdel---------tlEg 239 (400)
T KOG0328|consen 172 MLVLDEADEMLNKGFKEQIYDIYRYLP---PGAQVVLVSATLPHEILEMTEKFMTDPVRILVKRDEL---------TLEG 239 (400)
T ss_pred EEEeccHHHHHHhhHHHHHHHHHHhCC---CCceEEEEeccCcHHHHHHHHHhcCCceeEEEecCCC---------chhh
Confidence 999999999999999999999988886 4899999999999999999999999999987754431 2256
Q ss_pred ceEEEEEcCchh-hHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHHHHHHHH
Q psy15524 625 LKQHFIVTPPKL-RLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVF 703 (930)
Q Consensus 625 ~~~~~~~~~~~~-~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~v~ 703 (930)
++|+|+.+..+. |+..|.++-.... -.+++|||+|+..++++.+.+.+. ++.+..+||+|.+++|..++
T Consensus 240 IKqf~v~ve~EewKfdtLcdLYd~Lt-------ItQavIFcnTk~kVdwLtekm~~~---nftVssmHGDm~qkERd~im 309 (400)
T KOG0328|consen 240 IKQFFVAVEKEEWKFDTLCDLYDTLT-------ITQAVIFCNTKRKVDWLTEKMREA---NFTVSSMHGDMEQKERDKIM 309 (400)
T ss_pred hhhheeeechhhhhHhHHHHHhhhhe-------hheEEEEecccchhhHHHHHHHhh---CceeeeccCCcchhHHHHHH
Confidence 889998887766 8888887654432 458999999999999999999875 78899999999999999999
Q ss_pred HHhhcCCCcEEEeccccccccCCCCccEEEEecCCCChhhHHhhhcccccCCCCceEEEEeCcccHHHHHHHHhc-CCcc
Q psy15524 704 KTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPSEVKLVEELQNR-RIRI 782 (930)
Q Consensus 704 ~~F~~~~~~vLv~T~~~~~GlDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~e~~~~~~l~~~-~~~~ 782 (930)
.+|++|+.+||+|||+-+||+|+|.|++||+||.|.+.+.|+||+||.||.|+.|.++-|+..++...++.+++. +..+
T Consensus 310 ~dFRsg~SrvLitTDVwaRGiDv~qVslviNYDLP~nre~YIHRIGRSGRFGRkGvainFVk~~d~~~lrdieq~yst~i 389 (400)
T KOG0328|consen 310 NDFRSGKSRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDLRILRDIEQYYSTQI 389 (400)
T ss_pred HHhhcCCceEEEEechhhccCCcceeEEEEecCCCccHHHHhhhhccccccCCcceEEEEecHHHHHHHHHHHHHHhhhc
Confidence 999999999999999999999999999999999999999999999999999999999999999999988888763 4444
Q ss_pred chhc
Q psy15524 783 EEIK 786 (930)
Q Consensus 783 ~~~~ 786 (930)
.++.
T Consensus 390 ~emp 393 (400)
T KOG0328|consen 390 DEMP 393 (400)
T ss_pred cccc
Confidence 4444
|
|
| >KOG0336|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-60 Score=479.52 Aligned_cols=363 Identities=31% Similarity=0.512 Sum_probs=317.0
Q ss_pred CCCCCCCCCCHHHHHHHHhcCCCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeE
Q psy15524 390 TSYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYA 469 (930)
Q Consensus 390 ~~f~~l~~l~~~~~~~l~~~~~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~ 469 (930)
.+|++-..-.|++.+.+.+ .||.+|||||++|+|.+|+|.|++..|+||+|||++|++|-+.++...........++++
T Consensus 219 ctFddAFq~~pevmenIkK-~GFqKPtPIqSQaWPI~LQG~DliGVAQTgtgKtL~~L~pg~ihi~aqp~~~~qr~~p~~ 297 (629)
T KOG0336|consen 219 CTFDDAFQCYPEVMENIKK-TGFQKPTPIQSQAWPILLQGIDLIGVAQTGTGKTLAFLLPGFIHIDAQPKRREQRNGPGV 297 (629)
T ss_pred CcHHHHHhhhHHHHHHHHh-ccCCCCCcchhcccceeecCcceEEEEecCCCcCHHHhccceeeeeccchhhhccCCCce
Confidence 4677654788999999985 899999999999999999999999999999999999999998877654444445678999
Q ss_pred EEEccCHHHHHHHHHHHHHhhccCCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhccCCcccccceEEEEe
Q psy15524 470 VIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLD 549 (930)
Q Consensus 470 lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlD 549 (930)
|+++||||||.|+.-.+.+.. +...+..+++||.++..+...+.++.+|+++|||||.++... ..+++.++.|+|+|
T Consensus 298 lvl~ptreLalqie~e~~kys--yng~ksvc~ygggnR~eqie~lkrgveiiiatPgrlndL~~~-n~i~l~siTYlVlD 374 (629)
T KOG0336|consen 298 LVLTPTRELALQIEGEVKKYS--YNGLKSVCVYGGGNRNEQIEDLKRGVEIIIATPGRLNDLQMD-NVINLASITYLVLD 374 (629)
T ss_pred EEEeccHHHHHHHHhHHhHhh--hcCcceEEEecCCCchhHHHHHhcCceEEeeCCchHhhhhhc-CeeeeeeeEEEEec
Confidence 999999999999988877654 456788899999999999999999999999999999988765 67889999999999
Q ss_pred cchhhhhcCcHHHHHHHHHHHhhcCccceEEEEccccCHHHHHHHhhhcCCCEEEEccCCCCcccCccceecCCCceEEE
Q psy15524 550 EADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHF 629 (930)
Q Consensus 550 Eah~l~~~g~~~~l~~i~~~l~~~~~~~q~vl~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 629 (930)
|||+|+||||+..+..|+--+ .|++|+++.|||+|+.+.+++..++++|+.+-+.... +..-..++|.+
T Consensus 375 EADrMLDMgFEpqIrkilldi---RPDRqtvmTSATWP~~VrrLa~sY~Kep~~v~vGsLd--------L~a~~sVkQ~i 443 (629)
T KOG0336|consen 375 EADRMLDMGFEPQIRKILLDI---RPDRQTVMTSATWPEGVRRLAQSYLKEPMIVYVGSLD--------LVAVKSVKQNI 443 (629)
T ss_pred chhhhhcccccHHHHHHhhhc---CCcceeeeecccCchHHHHHHHHhhhCceEEEecccc--------eeeeeeeeeeE
Confidence 999999999999988876444 4699999999999999999999999999887765442 22335678888
Q ss_pred EEcCchhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHHHHHHHHHHhhcC
Q psy15524 630 IVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSV 709 (930)
Q Consensus 630 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~v~~~F~~~ 709 (930)
++.....++.....++.... ...|+||||+....++.+..-|.- .|+..-.+||+-+|.+|+..++.|++|
T Consensus 444 ~v~~d~~k~~~~~~f~~~ms------~ndKvIiFv~~K~~AD~LSSd~~l---~gi~~q~lHG~r~Q~DrE~al~~~ksG 514 (629)
T KOG0336|consen 444 IVTTDSEKLEIVQFFVANMS------SNDKVIIFVSRKVMADHLSSDFCL---KGISSQSLHGNREQSDREMALEDFKSG 514 (629)
T ss_pred EecccHHHHHHHHHHHHhcC------CCceEEEEEechhhhhhccchhhh---cccchhhccCChhhhhHHHHHHhhhcC
Confidence 77777777766666665432 267999999999999888776653 488888999999999999999999999
Q ss_pred CCcEEEeccccccccCCCCccEEEEecCCCChhhHHhhhcccccCCCCceEEEEeCcccHHHHHHHH
Q psy15524 710 KSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPSEVKLVEELQ 776 (930)
Q Consensus 710 ~~~vLv~T~~~~~GlDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~e~~~~~~l~ 776 (930)
+.+||||||+++||+|+|++++|++||.|.++++|+||+||+||+|+.|.++.|++.++....+.|.
T Consensus 515 ~vrILvaTDlaSRGlDv~DiTHV~NyDFP~nIeeYVHRvGrtGRaGr~G~sis~lt~~D~~~a~eLI 581 (629)
T KOG0336|consen 515 EVRILVATDLASRGLDVPDITHVYNYDFPRNIEEYVHRVGRTGRAGRTGTSISFLTRNDWSMAEELI 581 (629)
T ss_pred ceEEEEEechhhcCCCchhcceeeccCCCccHHHHHHHhcccccCCCCcceEEEEehhhHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999988777664
|
|
| >KOG0346|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-58 Score=474.48 Aligned_cols=364 Identities=30% Similarity=0.446 Sum_probs=320.0
Q ss_pred CCCCCCCCCCHHHHHHHHhcCCCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeE
Q psy15524 390 TSYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYA 469 (930)
Q Consensus 390 ~~f~~l~~l~~~~~~~l~~~~~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~ 469 (930)
.+|++| +|++.+++++.+ .||..||-||+.|||.+++|+|+++.|.||||||.+|++|+++.+...+.......|+.+
T Consensus 19 ktFe~~-gLD~RllkAi~~-lG~ekpTlIQs~aIplaLEgKDvvarArTGSGKT~AYliPllqkll~~k~t~~~e~~~sa 96 (569)
T KOG0346|consen 19 KTFEEF-GLDSRLLKAITK-LGWEKPTLIQSSAIPLALEGKDVVARARTGSGKTAAYLIPLLQKLLAEKKTNDGEQGPSA 96 (569)
T ss_pred ccHHHh-CCCHHHHHHHHH-hCcCCcchhhhcccchhhcCcceeeeeccCCCchHHHHHHHHHHHHHhhhccccccccee
Confidence 589999 999999999985 899999999999999999999999999999999999999999999876544445678999
Q ss_pred EEEccCHHHHHHHHHHHHHhhccCC-CcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhccCCcccccceEEEE
Q psy15524 470 VIILPTRELALQTLEIFTKLCKSFT-WIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVL 548 (930)
Q Consensus 470 lil~PtreLa~Q~~~~~~~~~~~~~-~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVl 548 (930)
+|++||||||+|++.++.++..... .+.+.-+....+.......+...++|+|+||++++.++.......++.++++|+
T Consensus 97 ~iLvPTkEL~qQvy~viekL~~~c~k~lr~~nl~s~~sdsv~~~~L~d~pdIvV~TP~~ll~~~~~~~~~~~~~l~~LVv 176 (569)
T KOG0346|consen 97 VILVPTKELAQQVYKVIEKLVEYCSKDLRAINLASSMSDSVNSVALMDLPDIVVATPAKLLRHLAAGVLEYLDSLSFLVV 176 (569)
T ss_pred EEEechHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchHHHHHHHccCCCeEEeChHHHHHHHhhccchhhhheeeEEe
Confidence 9999999999999999999876554 222222333333334446677889999999999999998755567899999999
Q ss_pred ecchhhhhcCcHHHHHHHHHHHhhcCccceEEEEccccCHHHHHHHhhhcCCCEEEEccCCCCcccCccceecCCCceEE
Q psy15524 549 DEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQH 628 (930)
Q Consensus 549 DEah~l~~~g~~~~l~~i~~~l~~~~~~~q~vl~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 628 (930)
||||.++..||++.+..+.+.+|. ..|.+++|||+++++..+-+..+.||+.+....... ..|+.+.|+
T Consensus 177 DEADLllsfGYeedlk~l~~~LPr---~~Q~~LmSATl~dDv~~LKkL~l~nPviLkl~e~el--------~~~dqL~Qy 245 (569)
T KOG0346|consen 177 DEADLLLSFGYEEDLKKLRSHLPR---IYQCFLMSATLSDDVQALKKLFLHNPVILKLTEGEL--------PNPDQLTQY 245 (569)
T ss_pred chhhhhhhcccHHHHHHHHHhCCc---hhhheeehhhhhhHHHHHHHHhccCCeEEEeccccC--------CCcccceEE
Confidence 999999999999999999999985 889999999999999999999999999988765432 256889999
Q ss_pred EEEcCchhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHHHHHHHHHHhhc
Q psy15524 629 FIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRS 708 (930)
Q Consensus 629 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~v~~~F~~ 708 (930)
++.|...+|+..+..+++...- .+++|||++|.+.+-.+.-.|.++ |+..+.++|.|+..-|..++++|..
T Consensus 246 ~v~cse~DKflllyallKL~LI------~gKsliFVNtIdr~YrLkLfLeqF---GiksciLNseLP~NSR~Hii~QFNk 316 (569)
T KOG0346|consen 246 QVKCSEEDKFLLLYALLKLRLI------RGKSLIFVNTIDRCYRLKLFLEQF---GIKSCILNSELPANSRCHIIEQFNK 316 (569)
T ss_pred EEEeccchhHHHHHHHHHHHHh------cCceEEEEechhhhHHHHHHHHHh---CcHhhhhcccccccchhhHHHHhhC
Confidence 9999999999999988876443 689999999999998888778776 8899999999999999999999999
Q ss_pred CCCcEEEeccc-----------------------------------cccccCCCCccEEEEecCCCChhhHHhhhccccc
Q psy15524 709 VKSGVLICTDV-----------------------------------AARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTAR 753 (930)
Q Consensus 709 ~~~~vLv~T~~-----------------------------------~~~GlDip~v~~VI~~~~p~s~~~y~qr~GRagR 753 (930)
|-.+++||||. ++|||||.+|..||+||+|.+...|+||+|||||
T Consensus 317 G~YdivIAtD~s~~~~~~eee~kgk~~e~~~kndkkskkK~D~E~GVsRGIDF~~V~~VlNFD~P~t~~sYIHRvGRTaR 396 (569)
T KOG0346|consen 317 GLYDIVIATDDSADGDKLEEEVKGKSDEKNPKNDKKSKKKLDKESGVSRGIDFHHVSNVLNFDFPETVTSYIHRVGRTAR 396 (569)
T ss_pred cceeEEEEccCccchhhhhccccccccccCCCCccccccccCchhchhccccchheeeeeecCCCCchHHHHHhcccccc
Confidence 99999999991 5899999999999999999999999999999999
Q ss_pred CCCCceEEEEeCcccHHHHHHH
Q psy15524 754 VGHEGSSLLFLIPSEVKLVEEL 775 (930)
Q Consensus 754 ~g~~g~~~~~~~~~e~~~~~~l 775 (930)
++++|.++.|+.|.|..-...+
T Consensus 397 g~n~GtalSfv~P~e~~g~~~l 418 (569)
T KOG0346|consen 397 GNNKGTALSFVSPKEEFGKESL 418 (569)
T ss_pred CCCCCceEEEecchHHhhhhHH
Confidence 9999999999999988633333
|
|
| >PRK04837 ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-57 Score=517.72 Aligned_cols=366 Identities=27% Similarity=0.427 Sum_probs=316.2
Q ss_pred CCCCCCCCCCCCHHHHHHHHhcCCCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCccc-CCCCC
Q psy15524 388 APTSYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKI-SRKDG 466 (930)
Q Consensus 388 ~~~~f~~l~~l~~~~~~~l~~~~~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~-~~~~~ 466 (930)
+..+|+++ +|++.++++|.+ +||..|||+|+++||.+++|+|++++||||||||++|++|+++.+....... ....+
T Consensus 6 ~~~~f~~~-~l~~~l~~~l~~-~g~~~pt~iQ~~aip~il~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~~ 83 (423)
T PRK04837 6 TEQKFSDF-ALHPQVVEALEK-KGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVNQ 83 (423)
T ss_pred CCCCHhhC-CCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCCCcEEEECCCCchHHHHHHHHHHHHHHhcccccccccCC
Confidence 45689999 999999999985 8999999999999999999999999999999999999999999987543211 12346
Q ss_pred eeEEEEccCHHHHHHHHHHHHHhhccCCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhccCCcccccceEE
Q psy15524 467 IYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHL 546 (930)
Q Consensus 467 ~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~l 546 (930)
+++|||+||||||.|+++.+..+....+ +.+..++||.....+...+..+++|+|+|||+|.+++.. ..+.+++++++
T Consensus 84 ~~~lil~PtreLa~Qi~~~~~~l~~~~~-~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~-~~~~l~~v~~l 161 (423)
T PRK04837 84 PRALIMAPTRELAVQIHADAEPLAQATG-LKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQ-NHINLGAIQVV 161 (423)
T ss_pred ceEEEECCcHHHHHHHHHHHHHHhccCC-ceEEEEECCCCHHHHHHHhcCCCCEEEECHHHHHHHHHc-CCcccccccEE
Confidence 8999999999999999999999887655 456777888888877778888899999999999999876 56778999999
Q ss_pred EEecchhhhhcCcHHHHHHHHHHHhhcCccceEEEEccccCHHHHHHHhhhcCCCEEEEccCCCCcccCccceecCCCce
Q psy15524 547 VLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLK 626 (930)
Q Consensus 547 VlDEah~l~~~g~~~~l~~i~~~l~~~~~~~q~vl~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 626 (930)
|+||||+++++||...+..++..++.. ..++.+++|||++..+..+....+.+|..+.+..... ....+.
T Consensus 162 ViDEad~l~~~~f~~~i~~i~~~~~~~-~~~~~~l~SAT~~~~~~~~~~~~~~~p~~i~v~~~~~---------~~~~i~ 231 (423)
T PRK04837 162 VLDEADRMFDLGFIKDIRWLFRRMPPA-NQRLNMLFSATLSYRVRELAFEHMNNPEYVEVEPEQK---------TGHRIK 231 (423)
T ss_pred EEecHHHHhhcccHHHHHHHHHhCCCc-cceeEEEEeccCCHHHHHHHHHHCCCCEEEEEcCCCc---------CCCcee
Confidence 999999999999999999888887642 2567899999999999999988999998887643321 123455
Q ss_pred EEEEEcCchhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHHHHHHHHHHh
Q psy15524 627 QHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTF 706 (930)
Q Consensus 627 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~v~~~F 706 (930)
+.+.......+...+..++... ...++||||++++.++.+++.|... ++.+..+||+|++.+|..++++|
T Consensus 232 ~~~~~~~~~~k~~~l~~ll~~~-------~~~~~lVF~~t~~~~~~l~~~L~~~---g~~v~~lhg~~~~~~R~~~l~~F 301 (423)
T PRK04837 232 EELFYPSNEEKMRLLQTLIEEE-------WPDRAIIFANTKHRCEEIWGHLAAD---GHRVGLLTGDVAQKKRLRILEEF 301 (423)
T ss_pred EEEEeCCHHHHHHHHHHHHHhc-------CCCeEEEEECCHHHHHHHHHHHHhC---CCcEEEecCCCChhHHHHHHHHH
Confidence 5666666677777777666532 1568999999999999999999874 78899999999999999999999
Q ss_pred hcCCCcEEEeccccccccCCCCccEEEEecCCCChhhHHhhhcccccCCCCceEEEEeCcccHHHHHHHHh
Q psy15524 707 RSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPSEVKLVEELQN 777 (930)
Q Consensus 707 ~~~~~~vLv~T~~~~~GlDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~e~~~~~~l~~ 777 (930)
++|+.+||||||+++||+|+|+|++||+||+|.+..+|+||+|||||.|+.|.++.|+.+.+...+..+++
T Consensus 302 ~~g~~~vLVaTdv~~rGiDip~v~~VI~~d~P~s~~~yiqR~GR~gR~G~~G~ai~~~~~~~~~~~~~i~~ 372 (423)
T PRK04837 302 TRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALNLPAIET 372 (423)
T ss_pred HcCCCcEEEEechhhcCCCccccCEEEEeCCCCchhheEeccccccCCCCCeeEEEEeCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999998887777754
|
|
| >PTZ00110 helicase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-57 Score=522.51 Aligned_cols=364 Identities=33% Similarity=0.515 Sum_probs=314.0
Q ss_pred CCCCCCCCCCHHHHHHHHhcCCCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeE
Q psy15524 390 TSYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYA 469 (930)
Q Consensus 390 ~~f~~l~~l~~~~~~~l~~~~~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~ 469 (930)
.+|+++ ++++.+++.|.+ +||..|||+|.++||.+++|+|++++||||||||++|++|++.++.... ......++.+
T Consensus 130 ~~f~~~-~l~~~l~~~l~~-~g~~~pt~iQ~~aip~~l~G~dvI~~ApTGSGKTlaylLP~l~~i~~~~-~~~~~~gp~~ 206 (545)
T PTZ00110 130 VSFEYT-SFPDYILKSLKN-AGFTEPTPIQVQGWPIALSGRDMIGIAETGSGKTLAFLLPAIVHINAQP-LLRYGDGPIV 206 (545)
T ss_pred CCHhhc-CCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhcCCCEEEEeCCCChHHHHHHHHHHHHHHhcc-cccCCCCcEE
Confidence 478888 899999999984 8999999999999999999999999999999999999999998876532 1223457899
Q ss_pred EEEccCHHHHHHHHHHHHHhhccCCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhccCCcccccceEEEEe
Q psy15524 470 VIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLD 549 (930)
Q Consensus 470 lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlD 549 (930)
|||+||||||.|+.+.+.++..... +...+++||.....+...+..+++|+|+|||+|.+++.. ....++++++||+|
T Consensus 207 LIL~PTreLa~Qi~~~~~~~~~~~~-i~~~~~~gg~~~~~q~~~l~~~~~IlVaTPgrL~d~l~~-~~~~l~~v~~lViD 284 (545)
T PTZ00110 207 LVLAPTRELAEQIREQCNKFGASSK-IRNTVAYGGVPKRGQIYALRRGVEILIACPGRLIDFLES-NVTNLRRVTYLVLD 284 (545)
T ss_pred EEECChHHHHHHHHHHHHHHhcccC-ccEEEEeCCCCHHHHHHHHHcCCCEEEECHHHHHHHHHc-CCCChhhCcEEEee
Confidence 9999999999999999999876543 456678889888888888888999999999999999976 45678999999999
Q ss_pred cchhhhhcCcHHHHHHHHHHHhhcCccceEEEEccccCHHHHHHHhhhcC-CCEEEEccCCCCcccCccceecCCCceEE
Q psy15524 550 EADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQ-NPIQIDAADSTDIHNTTDSLVIPDSLKQH 628 (930)
Q Consensus 550 Eah~l~~~g~~~~l~~i~~~l~~~~~~~q~vl~SAT~~~~~~~l~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 628 (930)
|||+++++||...+..|+..++ +.+|++++|||+|..+..++...+. +|+.+.+.... ......+.+.
T Consensus 285 EAd~mld~gf~~~i~~il~~~~---~~~q~l~~SAT~p~~v~~l~~~l~~~~~v~i~vg~~~--------l~~~~~i~q~ 353 (545)
T PTZ00110 285 EADRMLDMGFEPQIRKIVSQIR---PDRQTLMWSATWPKEVQSLARDLCKEEPVHVNVGSLD--------LTACHNIKQE 353 (545)
T ss_pred hHHhhhhcchHHHHHHHHHhCC---CCCeEEEEEeCCCHHHHHHHHHHhccCCEEEEECCCc--------cccCCCeeEE
Confidence 9999999999999988887764 4889999999999999999888775 57776654321 1122456677
Q ss_pred EEEcCchhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHHHHHHHHHHhhc
Q psy15524 629 FIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRS 708 (930)
Q Consensus 629 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~v~~~F~~ 708 (930)
+..+....+...+..++..... ...++||||++++.++.+++.|... ++.+..+||+|++.+|..+++.|++
T Consensus 354 ~~~~~~~~k~~~L~~ll~~~~~-----~~~k~LIF~~t~~~a~~l~~~L~~~---g~~~~~ihg~~~~~eR~~il~~F~~ 425 (545)
T PTZ00110 354 VFVVEEHEKRGKLKMLLQRIMR-----DGDKILIFVETKKGADFLTKELRLD---GWPALCIHGDKKQEERTWVLNEFKT 425 (545)
T ss_pred EEEEechhHHHHHHHHHHHhcc-----cCCeEEEEecChHHHHHHHHHHHHc---CCcEEEEECCCcHHHHHHHHHHHhc
Confidence 7777777788777777765432 2679999999999999999999763 7888899999999999999999999
Q ss_pred CCCcEEEeccccccccCCCCccEEEEecCCCChhhHHhhhcccccCCCCceEEEEeCcccHHHHHHHHh
Q psy15524 709 VKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPSEVKLVEELQN 777 (930)
Q Consensus 709 ~~~~vLv~T~~~~~GlDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~e~~~~~~l~~ 777 (930)
|+..||||||+++||||+|+|++||+||+|.++++|+||+|||||.|+.|.+++|+++++....+.|.+
T Consensus 426 G~~~ILVaTdv~~rGIDi~~v~~VI~~d~P~s~~~yvqRiGRtGR~G~~G~ai~~~~~~~~~~~~~l~~ 494 (545)
T PTZ00110 426 GKSPIMIATDVASRGLDVKDVKYVINFDFPNQIEDYVHRIGRTGRAGAKGASYTFLTPDKYRLARDLVK 494 (545)
T ss_pred CCCcEEEEcchhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEECcchHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999998876666543
|
|
| >KOG0326|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-59 Score=458.60 Aligned_cols=356 Identities=27% Similarity=0.506 Sum_probs=327.3
Q ss_pred CCCCCCCCCCCHHHHHHHHhcCCCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCee
Q psy15524 389 PTSYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIY 468 (930)
Q Consensus 389 ~~~f~~l~~l~~~~~~~l~~~~~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~ 468 (930)
...|+++ .|.++++..+.+ +||+.|+|+|+++||.++.|+|+++.|..|+|||-+|++|+++.+.. ......
T Consensus 84 G~efEd~-~Lkr~LLmgIfe-~G~ekPSPiQeesIPiaLtGrdiLaRaKNGTGKT~a~~IP~Lekid~------~~~~IQ 155 (459)
T KOG0326|consen 84 GNEFEDY-CLKRELLMGIFE-KGFEKPSPIQEESIPIALTGRDILARAKNGTGKTAAYCIPVLEKIDP------KKNVIQ 155 (459)
T ss_pred CccHHHh-hhhHHHHHHHHH-hccCCCCCccccccceeecchhhhhhccCCCCCccceechhhhhcCc------ccccee
Confidence 4579999 899999999986 79999999999999999999999999999999999999999998864 345778
Q ss_pred EEEEccCHHHHHHHHHHHHHhhccCCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhccCCcccccceEEEE
Q psy15524 469 AVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVL 548 (930)
Q Consensus 469 ~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVl 548 (930)
++|++||||||.|+.+.++.+.+..+ +.+...+||++.....-++....+++|+||||++++... +.-.++++.++|+
T Consensus 156 ~~ilVPtrelALQtSqvc~~lskh~~-i~vmvttGGT~lrDDI~Rl~~~VH~~vgTPGRIlDL~~K-gVa~ls~c~~lV~ 233 (459)
T KOG0326|consen 156 AIILVPTRELALQTSQVCKELSKHLG-IKVMVTTGGTSLRDDIMRLNQTVHLVVGTPGRILDLAKK-GVADLSDCVILVM 233 (459)
T ss_pred EEEEeecchhhHHHHHHHHHHhcccC-eEEEEecCCcccccceeeecCceEEEEcCChhHHHHHhc-ccccchhceEEEe
Confidence 99999999999999999999998776 667788999999999889999999999999999999886 5567899999999
Q ss_pred ecchhhhhcCcHHHHHHHHHHHhhcCccceEEEEccccCHHHHHHHhhhcCCCEEEEccCCCCcccCccceecCCCceEE
Q psy15524 549 DEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQH 628 (930)
Q Consensus 549 DEah~l~~~g~~~~l~~i~~~l~~~~~~~q~vl~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 628 (930)
||||.+++..|...++.++..+++ .+|++++|||+|-.+..+....+.+|..|..-++ ..+..+.|+
T Consensus 234 DEADKlLs~~F~~~~e~li~~lP~---~rQillySATFP~tVk~Fm~~~l~kPy~INLM~e----------Ltl~GvtQy 300 (459)
T KOG0326|consen 234 DEADKLLSVDFQPIVEKLISFLPK---ERQILLYSATFPLTVKGFMDRHLKKPYEINLMEE----------LTLKGVTQY 300 (459)
T ss_pred chhhhhhchhhhhHHHHHHHhCCc---cceeeEEecccchhHHHHHHHhccCcceeehhhh----------hhhcchhhh
Confidence 999999999999999999999986 8899999999999999999999999999987654 245678999
Q ss_pred EEEcCchhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHHHHHHHHHHhhc
Q psy15524 629 FIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRS 708 (930)
Q Consensus 629 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~v~~~F~~ 708 (930)
|.++.+..|...|..++.... -.+.||||+|...++.++..+.++ |+.++.+|+.|.|++|..++..|++
T Consensus 301 YafV~e~qKvhCLntLfskLq-------INQsIIFCNS~~rVELLAkKITel---GyscyyiHakM~Q~hRNrVFHdFr~ 370 (459)
T KOG0326|consen 301 YAFVEERQKVHCLNTLFSKLQ-------INQSIIFCNSTNRVELLAKKITEL---GYSCYYIHAKMAQEHRNRVFHDFRN 370 (459)
T ss_pred eeeechhhhhhhHHHHHHHhc-------ccceEEEeccchHhHHHHHHHHhc---cchhhHHHHHHHHhhhhhhhhhhhc
Confidence 999999999999888776532 347899999999999999999987 8999999999999999999999999
Q ss_pred CCCcEEEeccccccccCCCCccEEEEecCCCChhhHHhhhcccccCCCCceEEEEeCcccHHHHHHHHh
Q psy15524 709 VKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPSEVKLVEELQN 777 (930)
Q Consensus 709 ~~~~vLv~T~~~~~GlDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~e~~~~~~l~~ 777 (930)
|.++.|||||.+.||+|+++|++||+||.|.+.++|+||+||+||.|..|.++.+++-+|...+..+++
T Consensus 371 G~crnLVctDL~TRGIDiqavNvVINFDfpk~aEtYLHRIGRsGRFGhlGlAInLityedrf~L~~IE~ 439 (459)
T KOG0326|consen 371 GKCRNLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLGLAINLITYEDRFNLYRIEQ 439 (459)
T ss_pred cccceeeehhhhhcccccceeeEEEecCCCCCHHHHHHHccCCccCCCcceEEEEEehhhhhhHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999887777765
|
|
| >PRK11776 ATP-dependent RNA helicase DbpA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-57 Score=515.46 Aligned_cols=356 Identities=32% Similarity=0.536 Sum_probs=318.0
Q ss_pred CCCCCCCCCCHHHHHHHHhcCCCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeE
Q psy15524 390 TSYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYA 469 (930)
Q Consensus 390 ~~f~~l~~l~~~~~~~l~~~~~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~ 469 (930)
.+|+++ +|++.+.++|.+ +||..|||+|++|||.+++|+|++++||||||||++|++|+++.+... ..+.++
T Consensus 4 ~~f~~l-~l~~~l~~~l~~-~g~~~~t~iQ~~ai~~~l~g~dvi~~a~TGsGKT~a~~lpil~~l~~~------~~~~~~ 75 (460)
T PRK11776 4 TAFSTL-PLPPALLANLNE-LGYTEMTPIQAQSLPAILAGKDVIAQAKTGSGKTAAFGLGLLQKLDVK------RFRVQA 75 (460)
T ss_pred CChhhc-CCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHhhhc------cCCceE
Confidence 579999 899999999974 899999999999999999999999999999999999999999988541 235689
Q ss_pred EEEccCHHHHHHHHHHHHHhhccCCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhccCCcccccceEEEEe
Q psy15524 470 VIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLD 549 (930)
Q Consensus 470 lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlD 549 (930)
||++||+|||.|+++.++.+........+..++||.....+...+..+++|+|+|||+|.+++.+ ..+.++++++||+|
T Consensus 76 lil~PtreLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l~~~~~IvV~Tp~rl~~~l~~-~~~~l~~l~~lViD 154 (460)
T PRK11776 76 LVLCPTRELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSLEHGAHIIVGTPGRILDHLRK-GTLDLDALNTLVLD 154 (460)
T ss_pred EEEeCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHHhcCCCCEEEEChHHHHHHHHc-CCccHHHCCEEEEE
Confidence 99999999999999999998876655677788999988888888888999999999999999986 55678999999999
Q ss_pred cchhhhhcCcHHHHHHHHHHHhhcCccceEEEEccccCHHHHHHHhhhcCCCEEEEccCCCCcccCccceecCCCceEEE
Q psy15524 550 EADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHF 629 (930)
Q Consensus 550 Eah~l~~~g~~~~l~~i~~~l~~~~~~~q~vl~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 629 (930)
|||+++++||...+..++..++. .+|+++||||+++.+..++...+.+|..+.+..... ...+.+.+
T Consensus 155 Ead~~l~~g~~~~l~~i~~~~~~---~~q~ll~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~----------~~~i~~~~ 221 (460)
T PRK11776 155 EADRMLDMGFQDAIDAIIRQAPA---RRQTLLFSATYPEGIAAISQRFQRDPVEVKVESTHD----------LPAIEQRF 221 (460)
T ss_pred CHHHHhCcCcHHHHHHHHHhCCc---ccEEEEEEecCcHHHHHHHHHhcCCCEEEEECcCCC----------CCCeeEEE
Confidence 99999999999999988887764 789999999999999999999999998887654321 23467788
Q ss_pred EEcCchhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHHHHHHHHHHhhcC
Q psy15524 630 IVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSV 709 (930)
Q Consensus 630 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~v~~~F~~~ 709 (930)
+.++...+...+...+... ...++||||++++.++.+++.|... ++.+..+||+|++.+|..+++.|++|
T Consensus 222 ~~~~~~~k~~~l~~ll~~~-------~~~~~lVF~~t~~~~~~l~~~L~~~---~~~v~~~hg~~~~~eR~~~l~~F~~g 291 (460)
T PRK11776 222 YEVSPDERLPALQRLLLHH-------QPESCVVFCNTKKECQEVADALNAQ---GFSALALHGDLEQRDRDQVLVRFANR 291 (460)
T ss_pred EEeCcHHHHHHHHHHHHhc-------CCCceEEEECCHHHHHHHHHHHHhC---CCcEEEEeCCCCHHHHHHHHHHHHcC
Confidence 8888888888887777532 1568999999999999999999875 78899999999999999999999999
Q ss_pred CCcEEEeccccccccCCCCccEEEEecCCCChhhHHhhhcccccCCCCceEEEEeCcccHHHHHHHHh
Q psy15524 710 KSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPSEVKLVEELQN 777 (930)
Q Consensus 710 ~~~vLv~T~~~~~GlDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~e~~~~~~l~~ 777 (930)
+.+|||||++++||+|+|++++||+||.|.+..+|+||+|||||.|+.|.+++|+.++|...++.+..
T Consensus 292 ~~~vLVaTdv~~rGiDi~~v~~VI~~d~p~~~~~yiqR~GRtGR~g~~G~ai~l~~~~e~~~~~~i~~ 359 (460)
T PRK11776 292 SCSVLVATDVAARGLDIKALEAVINYELARDPEVHVHRIGRTGRAGSKGLALSLVAPEEMQRANAIED 359 (460)
T ss_pred CCcEEEEecccccccchhcCCeEEEecCCCCHhHhhhhcccccCCCCcceEEEEEchhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999887777754
|
|
| >PRK10590 ATP-dependent RNA helicase RhlE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-56 Score=510.37 Aligned_cols=361 Identities=35% Similarity=0.547 Sum_probs=311.4
Q ss_pred CCCCCCCCCHHHHHHHHhcCCCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEE
Q psy15524 391 SYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAV 470 (930)
Q Consensus 391 ~f~~l~~l~~~~~~~l~~~~~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~l 470 (930)
+|+++ +|++.+.+.|.+ +||..|||+|.++||.++.|+|++++||||||||++|++|+++.+.............++|
T Consensus 2 ~f~~l-~l~~~l~~~l~~-~g~~~pt~iQ~~ai~~il~g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~aL 79 (456)
T PRK10590 2 SFDSL-GLSPDILRAVAE-QGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRAL 79 (456)
T ss_pred CHHHc-CCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHhhhcccccccCCCceEE
Confidence 68999 899999999985 8999999999999999999999999999999999999999999987533221222346899
Q ss_pred EEccCHHHHHHHHHHHHHhhccCCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhccCCcccccceEEEEec
Q psy15524 471 IILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDE 550 (930)
Q Consensus 471 il~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlDE 550 (930)
||+||+|||.|+++.+..+..... +....++||.....+...+..+++|+|+||++|++++.. ..+.++++++||+||
T Consensus 80 il~PtreLa~Qi~~~~~~~~~~~~-~~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rL~~~~~~-~~~~l~~v~~lViDE 157 (456)
T PRK10590 80 ILTPTRELAAQIGENVRDYSKYLN-IRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQ-NAVKLDQVEILVLDE 157 (456)
T ss_pred EEeCcHHHHHHHHHHHHHHhccCC-CEEEEEECCcCHHHHHHHHcCCCcEEEEChHHHHHHHHc-CCcccccceEEEeec
Confidence 999999999999999999876544 455667888888877777888899999999999998875 456789999999999
Q ss_pred chhhhhcCcHHHHHHHHHHHhhcCccceEEEEccccCHHHHHHHhhhcCCCEEEEccCCCCcccCccceecCCCceEEEE
Q psy15524 551 ADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFI 630 (930)
Q Consensus 551 ah~l~~~g~~~~l~~i~~~l~~~~~~~q~vl~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 630 (930)
||++++++|...+..++..++. ..|+++||||+++.+..++...+.+|..+.+.... .....+.+.+.
T Consensus 158 ah~ll~~~~~~~i~~il~~l~~---~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~---------~~~~~i~~~~~ 225 (456)
T PRK10590 158 ADRMLDMGFIHDIRRVLAKLPA---KRQNLLFSATFSDDIKALAEKLLHNPLEIEVARRN---------TASEQVTQHVH 225 (456)
T ss_pred HHHHhccccHHHHHHHHHhCCc---cCeEEEEeCCCcHHHHHHHHHHcCCCeEEEEeccc---------ccccceeEEEE
Confidence 9999999999888888777654 78999999999999999999999999877654321 12245667777
Q ss_pred EcCchhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHHHHHHHHHHhhcCC
Q psy15524 631 VTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSVK 710 (930)
Q Consensus 631 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~v~~~F~~~~ 710 (930)
.++...+...+...+... ...++||||++++.++.+++.|... ++.+..+||+|++.+|..++++|++|+
T Consensus 226 ~~~~~~k~~~l~~l~~~~-------~~~~~lVF~~t~~~~~~l~~~L~~~---g~~~~~lhg~~~~~~R~~~l~~F~~g~ 295 (456)
T PRK10590 226 FVDKKRKRELLSQMIGKG-------NWQQVLVFTRTKHGANHLAEQLNKD---GIRSAAIHGNKSQGARTRALADFKSGD 295 (456)
T ss_pred EcCHHHHHHHHHHHHHcC-------CCCcEEEEcCcHHHHHHHHHHHHHC---CCCEEEEECCCCHHHHHHHHHHHHcCC
Confidence 777766666555554321 2568999999999999999999874 788899999999999999999999999
Q ss_pred CcEEEeccccccccCCCCccEEEEecCCCChhhHHhhhcccccCCCCceEEEEeCcccHHHHHHHHh
Q psy15524 711 SGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPSEVKLVEELQN 777 (930)
Q Consensus 711 ~~vLv~T~~~~~GlDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~e~~~~~~l~~ 777 (930)
.+|||||++++||+|+|+|++||+||+|.++.+|+||+|||||+|..|.+++|+.+.|..+++.+++
T Consensus 296 ~~iLVaTdv~~rGiDip~v~~VI~~~~P~~~~~yvqR~GRaGR~g~~G~ai~l~~~~d~~~~~~ie~ 362 (456)
T PRK10590 296 IRVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEK 362 (456)
T ss_pred CcEEEEccHHhcCCCcccCCEEEEeCCCCCHHHhhhhccccccCCCCeeEEEEecHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999888877765
|
|
| >PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-56 Score=516.25 Aligned_cols=363 Identities=29% Similarity=0.491 Sum_probs=311.7
Q ss_pred CCCCCCCCCCHHHHHHHHhcCCCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcc-cCCCCCee
Q psy15524 390 TSYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPK-ISRKDGIY 468 (930)
Q Consensus 390 ~~f~~l~~l~~~~~~~l~~~~~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~-~~~~~~~~ 468 (930)
.+|+++ ++++.+.+.|.+ +||..|||+|.++||.++.|+|++++||||||||++|++|++.++...... .....+++
T Consensus 121 ~~f~~~-~l~~~l~~~L~~-~g~~~ptpiQ~~aip~il~g~dviv~ApTGSGKTlayllPil~~l~~~~~~~~~~~~~~~ 198 (518)
T PLN00206 121 LSFSSC-GLPPKLLLNLET-AGYEFPTPIQMQAIPAALSGRSLLVSADTGSGKTASFLVPIISRCCTIRSGHPSEQRNPL 198 (518)
T ss_pred cCHHhC-CCCHHHHHHHHH-cCCCCCCHHHHHHHHHHhcCCCEEEEecCCCCccHHHHHHHHHHHHhhccccccccCCce
Confidence 468888 899999999975 899999999999999999999999999999999999999999988653221 11235789
Q ss_pred EEEEccCHHHHHHHHHHHHHhhccCCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhccCCcccccceEEEE
Q psy15524 469 AVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVL 548 (930)
Q Consensus 469 ~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVl 548 (930)
+|||+||||||.|+.+.++.+....+ .....++||.....+...+..+++|+|+|||+|.+++.+ ....++++++||+
T Consensus 199 aLIL~PTreLa~Qi~~~~~~l~~~~~-~~~~~~~gG~~~~~q~~~l~~~~~IiV~TPgrL~~~l~~-~~~~l~~v~~lVi 276 (518)
T PLN00206 199 AMVLTPTRELCVQVEDQAKVLGKGLP-FKTALVVGGDAMPQQLYRIQQGVELIVGTPGRLIDLLSK-HDIELDNVSVLVL 276 (518)
T ss_pred EEEEeCCHHHHHHHHHHHHHHhCCCC-ceEEEEECCcchHHHHHHhcCCCCEEEECHHHHHHHHHc-CCccchheeEEEe
Confidence 99999999999999999998877654 445667888887777778888999999999999999876 4677899999999
Q ss_pred ecchhhhhcCcHHHHHHHHHHHhhcCccceEEEEccccCHHHHHHHhhhcCCCEEEEccCCCCcccCccceecCCCceEE
Q psy15524 549 DEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQH 628 (930)
Q Consensus 549 DEah~l~~~g~~~~l~~i~~~l~~~~~~~q~vl~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 628 (930)
||||+|+++||...+..++..++ ..|++++|||+++.+..++...+.++..+....... ....+.+.
T Consensus 277 DEad~ml~~gf~~~i~~i~~~l~----~~q~l~~SATl~~~v~~l~~~~~~~~~~i~~~~~~~---------~~~~v~q~ 343 (518)
T PLN00206 277 DEVDCMLERGFRDQVMQIFQALS----QPQVLLFSATVSPEVEKFASSLAKDIILISIGNPNR---------PNKAVKQL 343 (518)
T ss_pred ecHHHHhhcchHHHHHHHHHhCC----CCcEEEEEeeCCHHHHHHHHHhCCCCEEEEeCCCCC---------CCcceeEE
Confidence 99999999999998888877764 679999999999999999999999998887654321 12345667
Q ss_pred EEEcCchhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHHHHHHHHHHhhc
Q psy15524 629 FIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRS 708 (930)
Q Consensus 629 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~v~~~F~~ 708 (930)
+..+....+...+...+..... ...++||||+++..++.+++.|... .++.+..+||+|++.+|..+++.|++
T Consensus 344 ~~~~~~~~k~~~l~~~l~~~~~-----~~~~~iVFv~s~~~a~~l~~~L~~~--~g~~~~~~Hg~~~~~eR~~il~~Fr~ 416 (518)
T PLN00206 344 AIWVETKQKKQKLFDILKSKQH-----FKPPAVVFVSSRLGADLLANAITVV--TGLKALSIHGEKSMKERREVMKSFLV 416 (518)
T ss_pred EEeccchhHHHHHHHHHHhhcc-----cCCCEEEEcCCchhHHHHHHHHhhc--cCcceEEeeCCCCHHHHHHHHHHHHC
Confidence 7777777777777777764321 1468999999999999999988753 26788889999999999999999999
Q ss_pred CCCcEEEeccccccccCCCCccEEEEecCCCChhhHHhhhcccccCCCCceEEEEeCcccHHHHHHHH
Q psy15524 709 VKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPSEVKLVEELQ 776 (930)
Q Consensus 709 ~~~~vLv~T~~~~~GlDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~e~~~~~~l~ 776 (930)
|+.+|||||++++||+|+|+|++||+||+|.+..+|+||+|||||.|..|.+++|+.+++...+..+.
T Consensus 417 G~~~ILVaTdvl~rGiDip~v~~VI~~d~P~s~~~yihRiGRaGR~g~~G~ai~f~~~~~~~~~~~l~ 484 (518)
T PLN00206 417 GEVPVIVATGVLGRGVDLLRVRQVIIFDMPNTIKEYIHQIGRASRMGEKGTAIVFVNEEDRNLFPELV 484 (518)
T ss_pred CCCCEEEEecHhhccCCcccCCEEEEeCCCCCHHHHHHhccccccCCCCeEEEEEEchhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998876555554
|
|
| >PRK11634 ATP-dependent RNA helicase DeaD; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-56 Score=520.02 Aligned_cols=364 Identities=32% Similarity=0.522 Sum_probs=320.9
Q ss_pred CCCCCCCCCCHHHHHHHHhcCCCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeE
Q psy15524 390 TSYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYA 469 (930)
Q Consensus 390 ~~f~~l~~l~~~~~~~l~~~~~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~ 469 (930)
.+|+++ +|++.++++|.+ +||.+|||+|.++||.++.|+|++++||||||||++|++|+++.+... ..++++
T Consensus 6 ~~f~~l-~L~~~ll~al~~-~G~~~ptpiQ~~ai~~ll~g~dvl~~ApTGsGKT~af~lpll~~l~~~------~~~~~~ 77 (629)
T PRK11634 6 TTFADL-GLKAPILEALND-LGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNLDPE------LKAPQI 77 (629)
T ss_pred CCHhhc-CCCHHHHHHHHH-CCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHHHhhhc------cCCCeE
Confidence 469999 999999999975 899999999999999999999999999999999999999999987541 346789
Q ss_pred EEEccCHHHHHHHHHHHHHhhccCCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhccCCcccccceEEEEe
Q psy15524 470 VIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLD 549 (930)
Q Consensus 470 lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlD 549 (930)
|||+||++||.|+++.+..+...+....+..++||.+...+...+..+++|+|+|||++++++.+ ..+.++++++||||
T Consensus 78 LIL~PTreLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l~~~~~IVVgTPgrl~d~l~r-~~l~l~~l~~lVlD 156 (629)
T PRK11634 78 LVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKR-GTLDLSKLSGLVLD 156 (629)
T ss_pred EEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHhcCCCCEEEECHHHHHHHHHc-CCcchhhceEEEec
Confidence 99999999999999999998877666667788899888888888888999999999999999976 56778999999999
Q ss_pred cchhhhhcCcHHHHHHHHHHHhhcCccceEEEEccccCHHHHHHHhhhcCCCEEEEccCCCCcccCccceecCCCceEEE
Q psy15524 550 EADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHF 629 (930)
Q Consensus 550 Eah~l~~~g~~~~l~~i~~~l~~~~~~~q~vl~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 629 (930)
|||.+++++|...+..++..++. ..|+++||||+|+.+..+...++.+|..+.+..... ....+.+.|
T Consensus 157 EAd~ml~~gf~~di~~Il~~lp~---~~q~llfSAT~p~~i~~i~~~~l~~~~~i~i~~~~~---------~~~~i~q~~ 224 (629)
T PRK11634 157 EADEMLRMGFIEDVETIMAQIPE---GHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVT---------TRPDISQSY 224 (629)
T ss_pred cHHHHhhcccHHHHHHHHHhCCC---CCeEEEEEccCChhHHHHHHHHcCCCeEEEccCccc---------cCCceEEEE
Confidence 99999999999999988887764 789999999999999999999999998876643321 123466778
Q ss_pred EEcCchhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHHHHHHHHHHhhcC
Q psy15524 630 IVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSV 709 (930)
Q Consensus 630 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~v~~~F~~~ 709 (930)
..+....+...+..++... ...++||||+|+..++.+++.|... ++.+..+||+|++.+|..+++.|++|
T Consensus 225 ~~v~~~~k~~~L~~~L~~~-------~~~~~IVF~~tk~~a~~l~~~L~~~---g~~~~~lhgd~~q~~R~~il~~Fr~G 294 (629)
T PRK11634 225 WTVWGMRKNEALVRFLEAE-------DFDAAIIFVRTKNATLEVAEALERN---GYNSAALNGDMNQALREQTLERLKDG 294 (629)
T ss_pred EEechhhHHHHHHHHHHhc-------CCCCEEEEeccHHHHHHHHHHHHhC---CCCEEEeeCCCCHHHHHHHHHHHhCC
Confidence 7777778888877777532 1468999999999999999999874 78899999999999999999999999
Q ss_pred CCcEEEeccccccccCCCCccEEEEecCCCChhhHHhhhcccccCCCCceEEEEeCcccHHHHHHHHhc-CCccch
Q psy15524 710 KSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPSEVKLVEELQNR-RIRIEE 784 (930)
Q Consensus 710 ~~~vLv~T~~~~~GlDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~e~~~~~~l~~~-~~~~~~ 784 (930)
+.+||||||++++|||+|+|++||+||+|.+.++|+||+|||||+|+.|.+++|+.+.|..+++.+.+. +..+++
T Consensus 295 ~~~ILVATdv~arGIDip~V~~VI~~d~P~~~e~yvqRiGRtGRaGr~G~ai~~v~~~e~~~l~~ie~~~~~~i~~ 370 (629)
T PRK11634 295 RLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPE 370 (629)
T ss_pred CCCEEEEcchHhcCCCcccCCEEEEeCCCCCHHHHHHHhccccCCCCcceEEEEechHHHHHHHHHHHHhCCCcce
Confidence 999999999999999999999999999999999999999999999999999999999998888888653 444433
|
|
| >KOG0347|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-58 Score=485.26 Aligned_cols=365 Identities=34% Similarity=0.511 Sum_probs=304.4
Q ss_pred CCCCCCCCCCHHHHHHHHhcCCCCCCCHHHHHhHHhhhcC-CcEEEEccCCCchhHHhhHHHHHHHHhhCc-----ccCC
Q psy15524 390 TSYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDG-GDVLVRSQTGSGKTLAYAIPIIQKLQEMRP-----KISR 463 (930)
Q Consensus 390 ~~f~~l~~l~~~~~~~l~~~~~~~~~~~iQ~~~i~~il~~-~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~-----~~~~ 463 (930)
..|.+| .+++.++.+|.+ +||..||+||..+||++..| .|++..|.|||||||||.||+++.+..... ....
T Consensus 181 sAW~~l-~lp~~iL~aL~~-~gFs~Pt~IQsl~lp~ai~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~~~~~ 258 (731)
T KOG0347|consen 181 SAWKNL-FLPMEILRALSN-LGFSRPTEIQSLVLPAAIRGKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQELSNTS 258 (731)
T ss_pred HHHhcC-CCCHHHHHHHHh-cCCCCCccchhhcccHhhccchhcccccccCCCceeeecchhhhhhhhccchHhhhhhHH
Confidence 358888 899999999984 89999999999999999999 799999999999999999999996543211 0011
Q ss_pred CCC--eeEEEEccCHHHHHHHHHHHHHhhccCCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhccCCc--c
Q psy15524 464 KDG--IYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETL--K 539 (930)
Q Consensus 464 ~~~--~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~--~ 539 (930)
..+ +.+||++||||||.|+.+.+..+.. ++.+.+..++||-....+.+.+...++|+|+|||||+.++.....+ +
T Consensus 259 ~k~~k~~~LV~tPTRELa~QV~~Hl~ai~~-~t~i~v~si~GGLavqKQqRlL~~~p~IVVATPGRlweli~e~n~~l~~ 337 (731)
T KOG0347|consen 259 AKYVKPIALVVTPTRELAHQVKQHLKAIAE-KTQIRVASITGGLAVQKQQRLLNQRPDIVVATPGRLWELIEEDNTHLGN 337 (731)
T ss_pred hccCcceeEEecChHHHHHHHHHHHHHhcc-ccCeEEEEeechhHHHHHHHHHhcCCCEEEecchHHHHHHHhhhhhhhh
Confidence 123 3599999999999999999998876 5667788899999999998889999999999999999998764432 5
Q ss_pred cccceEEEEecchhhhhcCcHHHHHHHHHHHhh--cCccceEEEEccccCHH---------------------HHHHHhh
Q psy15524 540 FSKVEHLVLDEADRILDQGYERDIAEFLEILKK--QKPQFQSILLSATLTPA---------------------VQRLAGM 596 (930)
Q Consensus 540 ~~~l~~lVlDEah~l~~~g~~~~l~~i~~~l~~--~~~~~q~vl~SAT~~~~---------------------~~~l~~~ 596 (930)
++.++++|+||||||++.|..+.+..+++.|.. ..+++|++.||||++-. ++.+...
T Consensus 338 ~k~vkcLVlDEaDRmvekghF~Els~lL~~L~e~~~~~qrQTlVFSATlt~~~~~~~~~~~k~~~k~~~~~~kiq~Lmk~ 417 (731)
T KOG0347|consen 338 FKKVKCLVLDEADRMVEKGHFEELSKLLKHLNEEQKNRQRQTLVFSATLTLVLQQPLSSSRKKKDKEDELNAKIQHLMKK 417 (731)
T ss_pred hhhceEEEEccHHHHhhhccHHHHHHHHHHhhhhhcccccceEEEEEEeehhhcChhHHhhhccchhhhhhHHHHHHHHH
Confidence 889999999999999999999999999999973 45688999999998632 2233322
Q ss_pred -hc-CCCEEEEccCCCCcccCccceecCCCceEEEEEcCchhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHH
Q psy15524 597 -TL-QNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHT 674 (930)
Q Consensus 597 -~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~ 674 (930)
.+ .+|.+|+...... +.+.+....+.|++..|...|+.+|..+ .+++||||++.+.+..++
T Consensus 418 ig~~~kpkiiD~t~q~~---------ta~~l~Es~I~C~~~eKD~ylyYfl~ry--------PGrTlVF~NsId~vKRLt 480 (731)
T KOG0347|consen 418 IGFRGKPKIIDLTPQSA---------TASTLTESLIECPPLEKDLYLYYFLTRY--------PGRTLVFCNSIDCVKRLT 480 (731)
T ss_pred hCccCCCeeEecCcchh---------HHHHHHHHhhcCCccccceeEEEEEeec--------CCceEEEechHHHHHHHH
Confidence 22 2456666654321 2233444445556655555555555433 789999999999999999
Q ss_pred HHHhhhcCCCceEEEecCCCCHHHHHHHHHHhhcCCCcEEEeccccccccCCCCccEEEEecCCCChhhHHhhhcccccC
Q psy15524 675 ELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARV 754 (930)
Q Consensus 675 ~~l~~~~~~~~~~~~lhg~~~~~~R~~v~~~F~~~~~~vLv~T~~~~~GlDip~v~~VI~~~~p~s~~~y~qr~GRagR~ 754 (930)
-+|+.+ ++..+.+|+.|.|.+|...+++|++...+||+|||||+||+|||+|++||||..|.+.+-|+||.|||+|+
T Consensus 481 ~~L~~L---~i~p~~LHA~M~QKqRLknLEkF~~~~~~VLiaTDVAARGLDIp~V~HVIHYqVPrtseiYVHRSGRTARA 557 (731)
T KOG0347|consen 481 VLLNNL---DIPPLPLHASMIQKQRLKNLEKFKQSPSGVLIATDVAARGLDIPGVQHVIHYQVPRTSEIYVHRSGRTARA 557 (731)
T ss_pred HHHhhc---CCCCchhhHHHHHHHHHHhHHHHhcCCCeEEEeehhhhccCCCCCcceEEEeecCCccceeEecccccccc
Confidence 999987 88899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceEEEEeCcccHHHHHHHHh
Q psy15524 755 GHEGSSLLFLIPSEVKLVEELQN 777 (930)
Q Consensus 755 g~~g~~~~~~~~~e~~~~~~l~~ 777 (930)
+..|.+++|+.|.|...+.+|-.
T Consensus 558 ~~~Gvsvml~~P~e~~~~~KL~k 580 (731)
T KOG0347|consen 558 NSEGVSVMLCGPQEVGPLKKLCK 580 (731)
T ss_pred cCCCeEEEEeChHHhHHHHHHHH
Confidence 99999999999999988877743
|
|
| >PRK04537 ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-56 Score=515.74 Aligned_cols=365 Identities=29% Similarity=0.488 Sum_probs=315.4
Q ss_pred CCCCCCCCCCHHHHHHHHhcCCCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCccc-CCCCCee
Q psy15524 390 TSYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKI-SRKDGIY 468 (930)
Q Consensus 390 ~~f~~l~~l~~~~~~~l~~~~~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~-~~~~~~~ 468 (930)
.+|++| +|++.+++.|.+ +||..|||+|+++||.++.|+|++++||||||||++|++|+++.+....... ....+++
T Consensus 9 ~~f~~l-~l~~~l~~~L~~-~g~~~ptpiQ~~~ip~~l~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~r 86 (572)
T PRK04537 9 LTFSSF-DLHPALLAGLES-AGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPR 86 (572)
T ss_pred CChhhc-CCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCCce
Confidence 469999 899999999984 8999999999999999999999999999999999999999999886532111 1123578
Q ss_pred EEEEccCHHHHHHHHHHHHHhhccCCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhccCCcccccceEEEE
Q psy15524 469 AVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVL 548 (930)
Q Consensus 469 ~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVl 548 (930)
+|||+||+|||.|+++.+.+++...+ +.+..++||.....+...+..+++|+|+||++|++++.....+.+..+++|||
T Consensus 87 aLIl~PTreLa~Qi~~~~~~l~~~~~-i~v~~l~Gg~~~~~q~~~l~~~~dIiV~TP~rL~~~l~~~~~~~l~~v~~lVi 165 (572)
T PRK04537 87 ALILAPTRELAIQIHKDAVKFGADLG-LRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVL 165 (572)
T ss_pred EEEEeCcHHHHHHHHHHHHHHhccCC-ceEEEEECCCCHHHHHHHHhCCCCEEEECHHHHHHHHHhccccchhheeeeEe
Confidence 99999999999999999999887654 45677899988888777788889999999999999998755677889999999
Q ss_pred ecchhhhhcCcHHHHHHHHHHHhhcCccceEEEEccccCHHHHHHHhhhcCCCEEEEccCCCCcccCccceecCCCceEE
Q psy15524 549 DEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQH 628 (930)
Q Consensus 549 DEah~l~~~g~~~~l~~i~~~l~~~~~~~q~vl~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 628 (930)
||||++++++|...+..++..++.. ..+|+++||||+++.+..+....+.+|..+.+.... .....+.+.
T Consensus 166 DEAh~lld~gf~~~i~~il~~lp~~-~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~v~~~~---------~~~~~i~q~ 235 (572)
T PRK04537 166 DEADRMFDLGFIKDIRFLLRRMPER-GTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETET---------ITAARVRQR 235 (572)
T ss_pred cCHHHHhhcchHHHHHHHHHhcccc-cCceEEEEeCCccHHHHHHHHHHhcCCcEEEecccc---------ccccceeEE
Confidence 9999999999999999988887653 267999999999999999998888888666543321 122446677
Q ss_pred EEEcCchhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHHHHHHHHHHhhc
Q psy15524 629 FIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRS 708 (930)
Q Consensus 629 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~v~~~F~~ 708 (930)
+.......+...+..++... ...++||||+|++.++.+++.|... ++.+..+||+|++.+|..+++.|++
T Consensus 236 ~~~~~~~~k~~~L~~ll~~~-------~~~k~LVF~nt~~~ae~l~~~L~~~---g~~v~~lhg~l~~~eR~~il~~Fr~ 305 (572)
T PRK04537 236 IYFPADEEKQTLLLGLLSRS-------EGARTMVFVNTKAFVERVARTLERH---GYRVGVLSGDVPQKKRESLLNRFQK 305 (572)
T ss_pred EEecCHHHHHHHHHHHHhcc-------cCCcEEEEeCCHHHHHHHHHHHHHc---CCCEEEEeCCCCHHHHHHHHHHHHc
Confidence 77777777777776666431 2679999999999999999999875 7889999999999999999999999
Q ss_pred CCCcEEEeccccccccCCCCccEEEEecCCCChhhHHhhhcccccCCCCceEEEEeCcccHHHHHHHHh
Q psy15524 709 VKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPSEVKLVEELQN 777 (930)
Q Consensus 709 ~~~~vLv~T~~~~~GlDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~e~~~~~~l~~ 777 (930)
|+.+||||||+++||||+|+|++||+||.|.+..+|+||+|||||.|..|.|++|+.+.+...+..+++
T Consensus 306 G~~~VLVaTdv~arGIDip~V~~VInyd~P~s~~~yvqRiGRaGR~G~~G~ai~~~~~~~~~~l~~i~~ 374 (572)
T PRK04537 306 GQLEILVATDVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISFACERYAMSLPDIEA 374 (572)
T ss_pred CCCeEEEEehhhhcCCCccCCCEEEEcCCCCCHHHHhhhhcccccCCCCceEEEEecHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999988887777755
|
|
| >KOG0335|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-57 Score=481.06 Aligned_cols=369 Identities=33% Similarity=0.465 Sum_probs=319.4
Q ss_pred CCCCCCCCCHHHHHHHHhcCCCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcc----cCCCCC
Q psy15524 391 SYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPK----ISRKDG 466 (930)
Q Consensus 391 ~f~~l~~l~~~~~~~l~~~~~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~----~~~~~~ 466 (930)
.|++- .+.+.+..++. ..++..|||+|+.+||.+..|+|++++|+||||||.+|++|++..+....+. ......
T Consensus 75 ~f~~~-~l~~~l~~ni~-~~~~~~ptpvQk~sip~i~~Grdl~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~~~~~~~ 152 (482)
T KOG0335|consen 75 TFDEA-ILGEALAGNIK-RSGYTKPTPVQKYSIPIISGGRDLMACAQTGSGKTAAFLIPIISYLLDEGPEDRGESGGGVY 152 (482)
T ss_pred ccccc-chhHHHhhccc-cccccCCCcceeeccceeecCCceEEEccCCCcchHHHHHHHHHHHHhcCcccCcccCCCCC
Confidence 57755 78888888876 5799999999999999999999999999999999999999999999886542 222245
Q ss_pred eeEEEEccCHHHHHHHHHHHHHhhccCCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhccCCcccccceEE
Q psy15524 467 IYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHL 546 (930)
Q Consensus 467 ~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~l 546 (930)
++++|++||||||.|++++.+++... .+......+||.+...+.+.+..+|+|+|+|||||.+++.. +.+.+++++++
T Consensus 153 P~~lIlapTReL~~Qi~nea~k~~~~-s~~~~~~~ygg~~~~~q~~~~~~gcdIlvaTpGrL~d~~e~-g~i~l~~~k~~ 230 (482)
T KOG0335|consen 153 PRALILAPTRELVDQIYNEARKFSYL-SGMKSVVVYGGTDLGAQLRFIKRGCDILVATPGRLKDLIER-GKISLDNCKFL 230 (482)
T ss_pred CceEEEeCcHHHhhHHHHHHHhhccc-ccceeeeeeCCcchhhhhhhhccCccEEEecCchhhhhhhc-ceeehhhCcEE
Confidence 89999999999999999999988653 45567778999999999999999999999999999999876 77889999999
Q ss_pred EEecchhhhh-cCcHHHHHHHHHHHhhc-CccceEEEEccccCHHHHHHHhhhcCC-CEEEEccCCCCcccCccceecCC
Q psy15524 547 VLDEADRILD-QGYERDIAEFLEILKKQ-KPQFQSILLSATLTPAVQRLAGMTLQN-PIQIDAADSTDIHNTTDSLVIPD 623 (930)
Q Consensus 547 VlDEah~l~~-~g~~~~l~~i~~~l~~~-~~~~q~vl~SAT~~~~~~~l~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~ 623 (930)
||||||+|+| +||++.+..|+...... ...+|+++||||.|..+..++..++.+ .+++.+.... ....
T Consensus 231 vLDEADrMlD~mgF~p~Ir~iv~~~~~~~~~~~qt~mFSAtfp~~iq~l~~~fl~~~yi~laV~rvg---------~~~~ 301 (482)
T KOG0335|consen 231 VLDEADRMLDEMGFEPQIRKIVEQLGMPPKNNRQTLLFSATFPKEIQRLAADFLKDNYIFLAVGRVG---------STSE 301 (482)
T ss_pred EecchHHhhhhccccccHHHHhcccCCCCccceeEEEEeccCChhhhhhHHHHhhccceEEEEeeec---------cccc
Confidence 9999999999 99999999999887542 347899999999999999999888886 6776665432 2346
Q ss_pred CceEEEEEcCchhhHHHHHHHHHhhccC--CCcCCCceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHHHHHH
Q psy15524 624 SLKQHFIVTPPKLRLVALASFILGKCQN--VNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTE 701 (930)
Q Consensus 624 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~--~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~ 701 (930)
.+.|....+....+...|...+...... .......+++|||.|.+.+.++..+|... ++.+..+||..+|.+|.+
T Consensus 302 ni~q~i~~V~~~~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~---~~~~~sIhg~~tq~er~~ 378 (482)
T KOG0335|consen 302 NITQKILFVNEMEKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSSN---GYPAKSIHGDRTQIEREQ 378 (482)
T ss_pred cceeEeeeecchhhHHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHhcC---CCCceeecchhhhhHHHH
Confidence 7889999999999999999888754322 11122348999999999999999999875 889999999999999999
Q ss_pred HHHHhhcCCCcEEEeccccccccCCCCccEEEEecCCCChhhHHhhhcccccCCCCceEEEEeCcccHHHHHHH
Q psy15524 702 VFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPSEVKLVEEL 775 (930)
Q Consensus 702 v~~~F~~~~~~vLv~T~~~~~GlDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~e~~~~~~l 775 (930)
.++.|++|...+||||++++||+|+|+|++||+||+|.+..+|+||+|||||.|+.|.+..|+........+.|
T Consensus 379 al~~Fr~g~~pvlVaT~VaaRGlDi~~V~hVInyDmP~d~d~YvHRIGRTGR~Gn~G~atsf~n~~~~~i~~~L 452 (482)
T KOG0335|consen 379 ALNDFRNGKAPVLVATNVAARGLDIPNVKHVINYDMPADIDDYVHRIGRTGRVGNGGRATSFFNEKNQNIAKAL 452 (482)
T ss_pred HHHHhhcCCcceEEEehhhhcCCCCCCCceeEEeecCcchhhHHHhccccccCCCCceeEEEeccccchhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999996555444444
|
|
| >KOG0341|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-58 Score=463.00 Aligned_cols=353 Identities=30% Similarity=0.510 Sum_probs=312.2
Q ss_pred CCCCCCCCCCHHHHHHHHhcCCCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhC--cccCCCCCe
Q psy15524 390 TSYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMR--PKISRKDGI 467 (930)
Q Consensus 390 ~~f~~l~~l~~~~~~~l~~~~~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~--~~~~~~~~~ 467 (930)
.+|.+. .+|..+++.|.+ .|+.+|||||.+.+|.+++|+|.|..|-||||||++|.+|++-..+... -...++.|+
T Consensus 170 ksF~eM-KFP~~~L~~lk~-KGI~~PTpIQvQGlPvvLsGRDmIGIAfTGSGKTlvFvLP~imf~LeqE~~lPf~~~EGP 247 (610)
T KOG0341|consen 170 KSFKEM-KFPKPLLRGLKK-KGIVHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPVIMFALEQEMMLPFARGEGP 247 (610)
T ss_pred hhhhhc-cCCHHHHHHHHh-cCCCCCCceeecCcceEeecCceeeEEeecCCceEEEeHHHHHHHHHHHhcCccccCCCC
Confidence 468888 889999999986 7999999999999999999999999999999999999999987665443 345678899
Q ss_pred eEEEEccCHHHHHHHHHHHHHhhcc-----CCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhccCCccccc
Q psy15524 468 YAVIILPTRELALQTLEIFTKLCKS-----FTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSK 542 (930)
Q Consensus 468 ~~lil~PtreLa~Q~~~~~~~~~~~-----~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~ 542 (930)
..|||||+||||.|+++.+..+... ++.+...+..||....++...++.|.+|+|+|||||.+++.. +..+++-
T Consensus 248 ~gLiicPSRELArQt~~iie~~~~~L~e~g~P~lRs~LciGG~~v~eql~~v~~GvHivVATPGRL~DmL~K-K~~sLd~ 326 (610)
T KOG0341|consen 248 YGLIICPSRELARQTHDIIEQYVAALQEAGYPELRSLLCIGGVPVREQLDVVRRGVHIVVATPGRLMDMLAK-KIMSLDA 326 (610)
T ss_pred eeEEEcCcHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhhcCccHHHHHHHHhcCeeEEEcCcchHHHHHHH-hhccHHH
Confidence 9999999999999999998877653 344566778899999999999999999999999999999987 5678899
Q ss_pred ceEEEEecchhhhhcCcHHHHHHHHHHHhhcCccceEEEEccccCHHHHHHHhhhcCCCEEEEccCCCCcccCccceecC
Q psy15524 543 VEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIP 622 (930)
Q Consensus 543 l~~lVlDEah~l~~~g~~~~l~~i~~~l~~~~~~~q~vl~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 622 (930)
++++.+||||||.|+||+.++..|...++. ++|+++||||+|..++.+++..+..|+.+++.......
T Consensus 327 CRyL~lDEADRmiDmGFEddir~iF~~FK~---QRQTLLFSATMP~KIQ~FAkSALVKPvtvNVGRAGAAs--------- 394 (610)
T KOG0341|consen 327 CRYLTLDEADRMIDMGFEDDIRTIFSFFKG---QRQTLLFSATMPKKIQNFAKSALVKPVTVNVGRAGAAS--------- 394 (610)
T ss_pred HHHhhhhhHHHHhhccchhhHHHHHHHHhh---hhheeeeeccccHHHHHHHHhhcccceEEecccccccc---------
Confidence 999999999999999999999999999875 89999999999999999999999999999987653221
Q ss_pred CCceEEEEEcCchhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHHHHHHH
Q psy15524 623 DSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEV 702 (930)
Q Consensus 623 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~v 702 (930)
-.+.|....+..+.|...+.+.|... ..+++|||.....++.++++|-- +|+.+..+||+-+|++|...
T Consensus 395 ldViQevEyVkqEaKiVylLeCLQKT--------~PpVLIFaEkK~DVD~IhEYLLl---KGVEavaIHGGKDQedR~~a 463 (610)
T KOG0341|consen 395 LDVIQEVEYVKQEAKIVYLLECLQKT--------SPPVLIFAEKKADVDDIHEYLLL---KGVEAVAIHGGKDQEDRHYA 463 (610)
T ss_pred hhHHHHHHHHHhhhhhhhHHHHhccC--------CCceEEEeccccChHHHHHHHHH---ccceeEEeecCcchhHHHHH
Confidence 12334444566677777777777542 67999999999999999988753 49999999999999999999
Q ss_pred HHHhhcCCCcEEEeccccccccCCCCccEEEEecCCCChhhHHhhhcccccCCCCceEEEEeCccc
Q psy15524 703 FKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPSE 768 (930)
Q Consensus 703 ~~~F~~~~~~vLv~T~~~~~GlDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~e 768 (930)
+++|+.|+.+||||||+++.|+|||++.+||+||+|.+++.|+||+|||||.|+.|.+..|+....
T Consensus 464 i~afr~gkKDVLVATDVASKGLDFp~iqHVINyDMP~eIENYVHRIGRTGRsg~~GiATTfINK~~ 529 (610)
T KOG0341|consen 464 IEAFRAGKKDVLVATDVASKGLDFPDIQHVINYDMPEEIENYVHRIGRTGRSGKTGIATTFINKNQ 529 (610)
T ss_pred HHHHhcCCCceEEEecchhccCCCccchhhccCCChHHHHHHHHHhcccCCCCCcceeeeeecccc
Confidence 999999999999999999999999999999999999999999999999999999999999998753
|
|
| >PRK11192 ATP-dependent RNA helicase SrmB; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-54 Score=490.21 Aligned_cols=359 Identities=31% Similarity=0.496 Sum_probs=308.1
Q ss_pred CCCCCCCCCHHHHHHHHhcCCCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEE
Q psy15524 391 SYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAV 470 (930)
Q Consensus 391 ~f~~l~~l~~~~~~~l~~~~~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~l 470 (930)
+|+++ ++++.+++.|.+ +||..||++|.++||.+++|+|++++||||+|||++|++|+++.+..... ....+.++|
T Consensus 2 ~f~~l-~l~~~l~~~l~~-~g~~~p~~iQ~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~--~~~~~~~~l 77 (434)
T PRK11192 2 TFSEL-ELDESLLEALQD-KGYTRPTAIQAEAIPPALDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPR--RKSGPPRIL 77 (434)
T ss_pred CHhhc-CCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhhccc--cCCCCceEE
Confidence 69999 999999999985 89999999999999999999999999999999999999999999875321 123457899
Q ss_pred EEccCHHHHHHHHHHHHHhhccCCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhccCCcccccceEEEEec
Q psy15524 471 IILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDE 550 (930)
Q Consensus 471 il~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlDE 550 (930)
|++||+|||.|+++.+..+....+ ..+..++||.....+...+..+++|+|+|||+|++++.. ..+.++++++||+||
T Consensus 78 il~Pt~eLa~Q~~~~~~~l~~~~~-~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~~~~-~~~~~~~v~~lViDE 155 (434)
T PRK11192 78 ILTPTRELAMQVADQARELAKHTH-LDIATITGGVAYMNHAEVFSENQDIVVATPGRLLQYIKE-ENFDCRAVETLILDE 155 (434)
T ss_pred EECCcHHHHHHHHHHHHHHHccCC-cEEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHc-CCcCcccCCEEEEEC
Confidence 999999999999999999887655 456778899888777777778899999999999999876 566789999999999
Q ss_pred chhhhhcCcHHHHHHHHHHHhhcCccceEEEEccccCH-HHHHHHhhhcCCCEEEEccCCCCcccCccceecCCCceEEE
Q psy15524 551 ADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTP-AVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHF 629 (930)
Q Consensus 551 ah~l~~~g~~~~l~~i~~~l~~~~~~~q~vl~SAT~~~-~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 629 (930)
||+++++||...+..+...++. ..|+++||||++. .+..+....+.+|..+....... ....+.+.+
T Consensus 156 ah~~l~~~~~~~~~~i~~~~~~---~~q~~~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~---------~~~~i~~~~ 223 (434)
T PRK11192 156 ADRMLDMGFAQDIETIAAETRW---RKQTLLFSATLEGDAVQDFAERLLNDPVEVEAEPSRR---------ERKKIHQWY 223 (434)
T ss_pred HHHHhCCCcHHHHHHHHHhCcc---ccEEEEEEeecCHHHHHHHHHHHccCCEEEEecCCcc---------cccCceEEE
Confidence 9999999999999888776653 6799999999985 58888888888998877644321 123455666
Q ss_pred EEcCc-hhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHHHHHHHHHHhhc
Q psy15524 630 IVTPP-KLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRS 708 (930)
Q Consensus 630 ~~~~~-~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~v~~~F~~ 708 (930)
..+.. ..+...+..++... ...++||||++++.++.+++.|... ++.+..+||+|++.+|..+++.|++
T Consensus 224 ~~~~~~~~k~~~l~~l~~~~-------~~~~~lVF~~s~~~~~~l~~~L~~~---~~~~~~l~g~~~~~~R~~~l~~f~~ 293 (434)
T PRK11192 224 YRADDLEHKTALLCHLLKQP-------EVTRSIVFVRTRERVHELAGWLRKA---GINCCYLEGEMVQAKRNEAIKRLTD 293 (434)
T ss_pred EEeCCHHHHHHHHHHHHhcC-------CCCeEEEEeCChHHHHHHHHHHHhC---CCCEEEecCCCCHHHHHHHHHHHhC
Confidence 55553 45555555554321 2579999999999999999999874 7889999999999999999999999
Q ss_pred CCCcEEEeccccccccCCCCccEEEEecCCCChhhHHhhhcccccCCCCceEEEEeCcccHHHHHHHHh
Q psy15524 709 VKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPSEVKLVEELQN 777 (930)
Q Consensus 709 ~~~~vLv~T~~~~~GlDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~e~~~~~~l~~ 777 (930)
|+.+||||||+++||+|+|++++||+||+|.+...|+||+|||||+|..|.+++|+..+|..++..+..
T Consensus 294 G~~~vLVaTd~~~~GiDip~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~g~ai~l~~~~d~~~~~~i~~ 362 (434)
T PRK11192 294 GRVNVLVATDVAARGIDIDDVSHVINFDMPRSADTYLHRIGRTGRAGRKGTAISLVEAHDHLLLGKIER 362 (434)
T ss_pred CCCcEEEEccccccCccCCCCCEEEEECCCCCHHHHhhcccccccCCCCceEEEEecHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999888887764
|
|
| >KOG0339|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-54 Score=446.62 Aligned_cols=361 Identities=31% Similarity=0.516 Sum_probs=319.5
Q ss_pred CCCCCCCCCCHHHHHHHHhcCCCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeE
Q psy15524 390 TSYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYA 469 (930)
Q Consensus 390 ~~f~~l~~l~~~~~~~l~~~~~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~ 469 (930)
++|+++ +++..+..++.+ -.|.+|||+|-+++|..+.|+|++..|.||||||-+|+.|++-++... +...++.|+..
T Consensus 223 tsfeh~-gfDkqLm~airk-~Ey~kptpiq~qalptalsgrdvigIAktgSgktaAfi~pm~~himdq-~eL~~g~gPi~ 299 (731)
T KOG0339|consen 223 TSFEHF-GFDKQLMTAIRK-SEYEKPTPIQCQALPTALSGRDVIGIAKTGSGKTAAFIWPMIVHIMDQ-PELKPGEGPIG 299 (731)
T ss_pred chhhhc-CchHHHHHHHhh-hhcccCCcccccccccccccccchheeeccCcchhHHHHHHHHHhcch-hhhcCCCCCeE
Confidence 578999 999999999974 699999999999999999999999999999999999999999998763 34456789999
Q ss_pred EEEccCHHHHHHHHHHHHHhhccCCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhccCCcccccceEEEEe
Q psy15524 470 VIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLD 549 (930)
Q Consensus 470 lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlD 549 (930)
||++||||||.|++.+++++++.++. .+.+++||.....+...+..++.|||||||||++++.. +..++.++.+||||
T Consensus 300 vilvPTrela~Qi~~eaKkf~K~ygl-~~v~~ygGgsk~eQ~k~Lk~g~EivVaTPgRlid~Vkm-Katn~~rvS~LV~D 377 (731)
T KOG0339|consen 300 VILVPTRELASQIFSEAKKFGKAYGL-RVVAVYGGGSKWEQSKELKEGAEIVVATPGRLIDMVKM-KATNLSRVSYLVLD 377 (731)
T ss_pred EEEeccHHHHHHHHHHHHHhhhhccc-eEEEeecCCcHHHHHHhhhcCCeEEEechHHHHHHHHh-hcccceeeeEEEEe
Confidence 99999999999999999999887764 45667888888888888999999999999999999986 67789999999999
Q ss_pred cchhhhhcCcHHHHHHHHHHHhhcCccceEEEEccccCHHHHHHHhhhcCCCEEEEccCCCCcccCccceecCCCceEEE
Q psy15524 550 EADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHF 629 (930)
Q Consensus 550 Eah~l~~~g~~~~l~~i~~~l~~~~~~~q~vl~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 629 (930)
|||+|.++||+..+..|...++ +++|+++||||++..++.+++..+.+|+.+........ .+.+.|.+
T Consensus 378 EadrmfdmGfe~qVrSI~~hir---pdrQtllFsaTf~~kIe~lard~L~dpVrvVqg~vgea---------n~dITQ~V 445 (731)
T KOG0339|consen 378 EADRMFDMGFEPQVRSIKQHIR---PDRQTLLFSATFKKKIEKLARDILSDPVRVVQGEVGEA---------NEDITQTV 445 (731)
T ss_pred chhhhhccccHHHHHHHHhhcC---CcceEEEeeccchHHHHHHHHHHhcCCeeEEEeehhcc---------ccchhhee
Confidence 9999999999999999988876 59999999999999999999999999998766533211 14466776
Q ss_pred EEcCc-hhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHHHHHHHHHHhhc
Q psy15524 630 IVTPP-KLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRS 708 (930)
Q Consensus 630 ~~~~~-~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~v~~~F~~ 708 (930)
.+++. ..|+..|...|..... .+++|+|+.....++.+...|.- +++.+..+||+|.|.+|.+++..|+.
T Consensus 446 ~V~~s~~~Kl~wl~~~L~~f~S------~gkvlifVTKk~~~e~i~a~Lkl---k~~~v~llhgdkdqa~rn~~ls~fKk 516 (731)
T KOG0339|consen 446 SVCPSEEKKLNWLLRHLVEFSS------EGKVLIFVTKKADAEEIAANLKL---KGFNVSLLHGDKDQAERNEVLSKFKK 516 (731)
T ss_pred eeccCcHHHHHHHHHHhhhhcc------CCcEEEEEeccCCHHHHHHHhcc---ccceeeeecCchhhHHHHHHHHHHhh
Confidence 66655 5677777777665432 67999999999999999888865 48999999999999999999999999
Q ss_pred CCCcEEEeccccccccCCCCccEEEEecCCCChhhHHhhhcccccCCCCceEEEEeCcccHHHHHHHH
Q psy15524 709 VKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPSEVKLVEELQ 776 (930)
Q Consensus 709 ~~~~vLv~T~~~~~GlDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~e~~~~~~l~ 776 (930)
+...|||+||+++||+|+|.+..||+||.-.+++.|.||+||+||+|..|.++.++++++..+.-.|-
T Consensus 517 k~~~VlvatDvaargldI~~ikTVvnyD~ardIdththrigrtgRag~kGvayTlvTeKDa~fAG~LV 584 (731)
T KOG0339|consen 517 KRKPVLVATDVAARGLDIPSIKTVVNYDFARDIDTHTHRIGRTGRAGEKGVAYTLVTEKDAEFAGHLV 584 (731)
T ss_pred cCCceEEEeeHhhcCCCccccceeecccccchhHHHHHHhhhcccccccceeeEEechhhHHHhhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999987655543
|
|
| >PRK01297 ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-53 Score=484.40 Aligned_cols=365 Identities=30% Similarity=0.450 Sum_probs=308.3
Q ss_pred CCCCCCCCCCCHHHHHHHHhcCCCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccC-CCCCe
Q psy15524 389 PTSYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKIS-RKDGI 467 (930)
Q Consensus 389 ~~~f~~l~~l~~~~~~~l~~~~~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~-~~~~~ 467 (930)
..+|.++ +|++.+.++|.+ +||..||++|.++|+.+++|+|+++.||||||||++|++|+++.+........ ...+.
T Consensus 86 ~~~f~~~-~l~~~l~~~l~~-~g~~~~~~iQ~~ai~~~~~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~~~ 163 (475)
T PRK01297 86 KTRFHDF-NLAPELMHAIHD-LGFPYCTPIQAQVLGYTLAGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEP 163 (475)
T ss_pred CCCHhHC-CCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhcCcccccccCCc
Confidence 3578888 899999999985 89999999999999999999999999999999999999999999876422111 11257
Q ss_pred eEEEEccCHHHHHHHHHHHHHhhccCCCcceEEEeCCCchHHHHHHHh-cCCcEEEECchhHHHhhhccCCcccccceEE
Q psy15524 468 YAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIR-KGISILVATPGRLLDHCKHTETLKFSKVEHL 546 (930)
Q Consensus 468 ~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~-~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~l 546 (930)
++|||+||+|||.|+++.++.+....+ .....++||.+...+...+. ..++|+|+||++|+++..+ ....++++++|
T Consensus 164 ~aLil~PtreLa~Q~~~~~~~l~~~~~-~~v~~~~gg~~~~~~~~~~~~~~~~Iiv~TP~~Ll~~~~~-~~~~l~~l~~l 241 (475)
T PRK01297 164 RALIIAPTRELVVQIAKDAAALTKYTG-LNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQR-GEVHLDMVEVM 241 (475)
T ss_pred eEEEEeCcHHHHHHHHHHHHHhhccCC-CEEEEEEccCChHHHHHHHhCCCCCEEEECHHHHHHHHHc-CCcccccCceE
Confidence 899999999999999999999887654 44566778877666665554 4689999999999998876 34568999999
Q ss_pred EEecchhhhhcCcHHHHHHHHHHHhhcCccceEEEEccccCHHHHHHHhhhcCCCEEEEccCCCCcccCccceecCCCce
Q psy15524 547 VLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLK 626 (930)
Q Consensus 547 VlDEah~l~~~g~~~~l~~i~~~l~~~~~~~q~vl~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 626 (930)
||||||++++++|...+..++..++.. ...|++++|||++..+..++..++.+|..+.+..... ....+.
T Consensus 242 ViDEah~l~~~~~~~~l~~i~~~~~~~-~~~q~i~~SAT~~~~~~~~~~~~~~~~~~v~~~~~~~---------~~~~~~ 311 (475)
T PRK01297 242 VLDEADRMLDMGFIPQVRQIIRQTPRK-EERQTLLFSATFTDDVMNLAKQWTTDPAIVEIEPENV---------ASDTVE 311 (475)
T ss_pred EechHHHHHhcccHHHHHHHHHhCCCC-CCceEEEEEeecCHHHHHHHHHhccCCEEEEeccCcC---------CCCccc
Confidence 999999999999999898888877542 3579999999999999999999999998876644321 123345
Q ss_pred EEEEEcCchhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHHHHHHHHHHh
Q psy15524 627 QHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTF 706 (930)
Q Consensus 627 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~v~~~F 706 (930)
+.+..+....+...+..++... ...++||||++++.++.+++.|... ++.+..+||++++++|.++++.|
T Consensus 312 ~~~~~~~~~~k~~~l~~ll~~~-------~~~~~IVF~~s~~~~~~l~~~L~~~---~~~~~~~~g~~~~~~R~~~~~~F 381 (475)
T PRK01297 312 QHVYAVAGSDKYKLLYNLVTQN-------PWERVMVFANRKDEVRRIEERLVKD---GINAAQLSGDVPQHKRIKTLEGF 381 (475)
T ss_pred EEEEEecchhHHHHHHHHHHhc-------CCCeEEEEeCCHHHHHHHHHHHHHc---CCCEEEEECCCCHHHHHHHHHHH
Confidence 6666666667776666666431 1469999999999999999999764 77888999999999999999999
Q ss_pred hcCCCcEEEeccccccccCCCCccEEEEecCCCChhhHHhhhcccccCCCCceEEEEeCcccHHHHHHHHh
Q psy15524 707 RSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPSEVKLVEELQN 777 (930)
Q Consensus 707 ~~~~~~vLv~T~~~~~GlDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~e~~~~~~l~~ 777 (930)
++|+.+|||||+++++|+|+|++++||+||+|.+..+|+||+||+||.|++|.+++|+.++|..++..+++
T Consensus 382 r~G~~~vLvaT~~l~~GIDi~~v~~VI~~~~P~s~~~y~Qr~GRaGR~g~~g~~i~~~~~~d~~~~~~~~~ 452 (475)
T PRK01297 382 REGKIRVLVATDVAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGASGVSISFAGEDDAFQLPEIEE 452 (475)
T ss_pred hCCCCcEEEEccccccCCcccCCCEEEEeCCCCCHHHHHHhhCccCCCCCCceEEEEecHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999988777777654
|
|
| >KOG0350|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-53 Score=440.68 Aligned_cols=354 Identities=33% Similarity=0.546 Sum_probs=302.0
Q ss_pred HHHHhcCCCCCCCHHHHHhHHhhhc---------CCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEcc
Q psy15524 404 KNLNEGMNITQVTTVQQLSIQPILD---------GGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILP 474 (930)
Q Consensus 404 ~~l~~~~~~~~~~~iQ~~~i~~il~---------~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~P 474 (930)
..+. .|+++...|+|..++|.++. ++|+.|.||||||||+||.+||++.+.... -+..+||||+|
T Consensus 150 q~l~-k~~is~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIVQ~L~~R~-----v~~LRavVivP 223 (620)
T KOG0350|consen 150 QLLV-KMAISRLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIVQLLSSRP-----VKRLRAVVIVP 223 (620)
T ss_pred HHHH-HhhcccccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHHHHHccCC-----ccceEEEEEee
Confidence 3355 48999999999999999863 589999999999999999999999987632 24589999999
Q ss_pred CHHHHHHHHHHHHHhhccCCCcceEEEeCCCchHHHHHHHhcC-----CcEEEECchhHHHhhhccCCcccccceEEEEe
Q psy15524 475 TRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKG-----ISILVATPGRLLDHCKHTETLKFSKVEHLVLD 549 (930)
Q Consensus 475 treLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~-----~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlD 549 (930)
|++|+.|++++|..+....+.. ++.+.|..+...+...+.+. .||+|+|||||.+|+.+++.+.+++++++|||
T Consensus 224 tr~L~~QV~~~f~~~~~~tgL~-V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRLVDHl~~~k~f~Lk~LrfLVID 302 (620)
T KOG0350|consen 224 TRELALQVYDTFKRLNSGTGLA-VCSLSGQNSLEDEARQLASDPPECRIDILVATPGRLVDHLNNTKSFDLKHLRFLVID 302 (620)
T ss_pred HHHHHHHHHHHHHHhccCCceE-EEecccccchHHHHHHHhcCCCccccceEEcCchHHHHhccCCCCcchhhceEEEec
Confidence 9999999999999998876544 66778888888887777643 48999999999999999999999999999999
Q ss_pred cchhhhhcCcHHHHHHHHHHHhhc-------------------------------CccceEEEEccccCHHHHHHHhhhc
Q psy15524 550 EADRILDQGYERDIAEFLEILKKQ-------------------------------KPQFQSILLSATLTPAVQRLAGMTL 598 (930)
Q Consensus 550 Eah~l~~~g~~~~l~~i~~~l~~~-------------------------------~~~~q~vl~SAT~~~~~~~l~~~~~ 598 (930)
|||||++..|..++..+...+... .+..+.+++|||++..-..+....+
T Consensus 303 EADRll~qsfQ~Wl~~v~~~~~~~k~~~~~~nii~~~~~~~pt~~~e~~t~~~~~~~~l~kL~~satLsqdP~Kl~~l~l 382 (620)
T KOG0350|consen 303 EADRLLDQSFQEWLDTVMSLCKTMKRVACLDNIIRQRQAPQPTVLSELLTKLGKLYPPLWKLVFSATLSQDPSKLKDLTL 382 (620)
T ss_pred hHHHHHHHHHHHHHHHHHHHhCCchhhcChhhhhhhcccCCchhhHHHHhhcCCcCchhHhhhcchhhhcChHHHhhhhc
Confidence 999999999988887777665432 1234578899999888888888888
Q ss_pred CCCEEEEccCCCCcccCccceecCCCceEEEEEcCchhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHh
Q psy15524 599 QNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLS 678 (930)
Q Consensus 599 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~ 678 (930)
..|....+... ....+.+|..+.+.++.+....+-..+...+.... ..++|+|+++.+.+..++..|+
T Consensus 383 ~~Prl~~v~~~-----~~~ryslp~~l~~~~vv~~~~~kpl~~~~lI~~~k-------~~r~lcf~~S~~sa~Rl~~~L~ 450 (620)
T KOG0350|consen 383 HIPRLFHVSKP-----LIGRYSLPSSLSHRLVVTEPKFKPLAVYALITSNK-------LNRTLCFVNSVSSANRLAHVLK 450 (620)
T ss_pred CCCceEEeecc-----cceeeecChhhhhceeecccccchHhHHHHHHHhh-------cceEEEEecchHHHHHHHHHHH
Confidence 88866555432 12346789999999999999898888888887542 5699999999999999999998
Q ss_pred -hhcCCCceEEEecCCCCHHHHHHHHHHhhcCCCcEEEeccccccccCCCCccEEEEecCCCChhhHHhhhcccccCCCC
Q psy15524 679 -TVLGENIAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHE 757 (930)
Q Consensus 679 -~~~~~~~~~~~lhg~~~~~~R~~v~~~F~~~~~~vLv~T~~~~~GlDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~ 757 (930)
.+...+..+-.+.|+++++.|.+.++.|..|+++||||+|+++||+|+.+|+.||+||+|.+..+|+||+|||||+|+.
T Consensus 451 v~~~~~~~~~s~~t~~l~~k~r~k~l~~f~~g~i~vLIcSD~laRGiDv~~v~~VINYd~P~~~ktyVHR~GRTARAgq~ 530 (620)
T KOG0350|consen 451 VEFCSDNFKVSEFTGQLNGKRRYKMLEKFAKGDINVLICSDALARGIDVNDVDNVINYDPPASDKTYVHRAGRTARAGQD 530 (620)
T ss_pred HHhccccchhhhhhhhhhHHHHHHHHHHHhcCCceEEEehhhhhcCCcccccceEeecCCCchhhHHHHhhcccccccCC
Confidence 4444466677789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEeCcccHHHHHHHH
Q psy15524 758 GSSLLFLIPSEVKLVEELQ 776 (930)
Q Consensus 758 g~~~~~~~~~e~~~~~~l~ 776 (930)
|.|+.++..++...+.++.
T Consensus 531 G~a~tll~~~~~r~F~klL 549 (620)
T KOG0350|consen 531 GYAITLLDKHEKRLFSKLL 549 (620)
T ss_pred ceEEEeeccccchHHHHHH
Confidence 9999999998887555443
|
|
| >PTZ00424 helicase 45; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-51 Score=466.53 Aligned_cols=356 Identities=26% Similarity=0.516 Sum_probs=301.4
Q ss_pred CCCCCCCCCCHHHHHHHHhcCCCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeE
Q psy15524 390 TSYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYA 469 (930)
Q Consensus 390 ~~f~~l~~l~~~~~~~l~~~~~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~ 469 (930)
.+|+++ ++++.+.+++.+ +||..|+|+|.++|+.+++|+|++++||||||||++|++|+++.+.. ...+.++
T Consensus 28 ~~~~~l-~l~~~~~~~l~~-~~~~~~~~~Q~~ai~~i~~~~d~ii~apTGsGKT~~~~l~~l~~~~~------~~~~~~~ 99 (401)
T PTZ00424 28 DSFDAL-KLNEDLLRGIYS-YGFEKPSAIQQRGIKPILDGYDTIGQAQSGTGKTATFVIAALQLIDY------DLNACQA 99 (401)
T ss_pred CCHhhC-CCCHHHHHHHHH-cCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhcC------CCCCceE
Confidence 579999 899999999974 89999999999999999999999999999999999999999988753 1346789
Q ss_pred EEEccCHHHHHHHHHHHHHhhccCCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhccCCcccccceEEEEe
Q psy15524 470 VIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLD 549 (930)
Q Consensus 470 lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlD 549 (930)
||++||++|+.|+.+.+..++.... ..+..+.||.........+..+++|+|+||+++.+++.+ ....+++++++|+|
T Consensus 100 lil~Pt~~L~~Q~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~-~~~~l~~i~lvViD 177 (401)
T PTZ00424 100 LILAPTRELAQQIQKVVLALGDYLK-VRCHACVGGTVVRDDINKLKAGVHMVVGTPGRVYDMIDK-RHLRVDDLKLFILD 177 (401)
T ss_pred EEECCCHHHHHHHHHHHHHHhhhcC-ceEEEEECCcCHHHHHHHHcCCCCEEEECcHHHHHHHHh-CCcccccccEEEEe
Confidence 9999999999999999988876543 344556788777777777778899999999999998876 44668999999999
Q ss_pred cchhhhhcCcHHHHHHHHHHHhhcCccceEEEEccccCHHHHHHHhhhcCCCEEEEccCCCCcccCccceecCCCceEEE
Q psy15524 550 EADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHF 629 (930)
Q Consensus 550 Eah~l~~~g~~~~l~~i~~~l~~~~~~~q~vl~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 629 (930)
|||++++.+|...+..++..++ +..|++++|||+++.+..+...++.+|..+.+.... .....+.+.+
T Consensus 178 Eah~~~~~~~~~~~~~i~~~~~---~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~ 245 (401)
T PTZ00424 178 EADEMLSRGFKGQIYDVFKKLP---PDVQVALFSATMPNEILELTTKFMRDPKRILVKKDE---------LTLEGIRQFY 245 (401)
T ss_pred cHHHHHhcchHHHHHHHHhhCC---CCcEEEEEEecCCHHHHHHHHHHcCCCEEEEeCCCC---------cccCCceEEE
Confidence 9999999999887777766554 478999999999999998888888888776543321 1123455666
Q ss_pred EEcCc-hhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHHHHHHHHHHhhc
Q psy15524 630 IVTPP-KLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRS 708 (930)
Q Consensus 630 ~~~~~-~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~v~~~F~~ 708 (930)
..+.. ..+...+...+... ...++||||++++.++.+++.|... ++.+..+||+|++.+|..++++|++
T Consensus 246 ~~~~~~~~~~~~l~~~~~~~-------~~~~~ivF~~t~~~~~~l~~~l~~~---~~~~~~~h~~~~~~~R~~i~~~f~~ 315 (401)
T PTZ00424 246 VAVEKEEWKFDTLCDLYETL-------TITQAIIYCNTRRKVDYLTKKMHER---DFTVSCMHGDMDQKDRDLIMREFRS 315 (401)
T ss_pred EecChHHHHHHHHHHHHHhc-------CCCeEEEEecCcHHHHHHHHHHHHC---CCcEEEEeCCCCHHHHHHHHHHHHc
Confidence 55554 23444444443321 1468999999999999999999874 7788899999999999999999999
Q ss_pred CCCcEEEeccccccccCCCCccEEEEecCCCChhhHHhhhcccccCCCCceEEEEeCcccHHHHHHHHh
Q psy15524 709 VKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPSEVKLVEELQN 777 (930)
Q Consensus 709 ~~~~vLv~T~~~~~GlDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~e~~~~~~l~~ 777 (930)
|+.+|||||+++++|+|+|++++||++|+|.+..+|+||+||+||.|+.|.|++|+.+++..+++.+++
T Consensus 316 g~~~vLvaT~~l~~GiDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~G~~i~l~~~~~~~~~~~~e~ 384 (401)
T PTZ00424 316 GSTRVLITTDLLARGIDVQQVSLVINYDLPASPENYIHRIGRSGRFGRKGVAINFVTPDDIEQLKEIER 384 (401)
T ss_pred CCCCEEEEcccccCCcCcccCCEEEEECCCCCHHHEeecccccccCCCCceEEEEEcHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999998888865
|
|
| >KOG0334|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-52 Score=475.66 Aligned_cols=362 Identities=32% Similarity=0.539 Sum_probs=324.2
Q ss_pred CCCCCCCCCCHHHHHHHHhcCCCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeE
Q psy15524 390 TSYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYA 469 (930)
Q Consensus 390 ~~f~~l~~l~~~~~~~l~~~~~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~ 469 (930)
.+|.+. +++..++..++ .+||..+||||.+|||+|+.|+|+|.+|.||||||++|++|++.+....+ ....++|+.+
T Consensus 365 ~sW~q~-gl~~~il~tlk-kl~y~k~~~IQ~qAiP~ImsGrdvIgvakTgSGKT~af~LPmirhi~dQr-~~~~gdGPi~ 441 (997)
T KOG0334|consen 365 TSWTQC-GLSSKILETLK-KLGYEKPTPIQAQAIPAIMSGRDVIGVAKTGSGKTLAFLLPMIRHIKDQR-PLEEGDGPIA 441 (997)
T ss_pred chHhhC-CchHHHHHHHH-HhcCCCCcchhhhhcchhccCcceEEeeccCCccchhhhcchhhhhhcCC-ChhhCCCceE
Confidence 578888 99999999995 69999999999999999999999999999999999999999998876643 3445679999
Q ss_pred EEEccCHHHHHHHHHHHHHhhccCCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhcc--CCcccccceEEE
Q psy15524 470 VIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHT--ETLKFSKVEHLV 547 (930)
Q Consensus 470 lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~--~~~~~~~l~~lV 547 (930)
||++||||||.|+++.+.++... ..+.+.+++||.....+...++.++.|+||||||+++.+..+ +..++.++.++|
T Consensus 442 li~aPtrela~QI~r~~~kf~k~-l~ir~v~vygg~~~~~qiaelkRg~eIvV~tpGRmiD~l~~n~grvtnlrR~t~lv 520 (997)
T KOG0334|consen 442 LILAPTRELAMQIHREVRKFLKL-LGIRVVCVYGGSGISQQIAELKRGAEIVVCTPGRMIDILCANSGRVTNLRRVTYLV 520 (997)
T ss_pred EEEcCCHHHHHHHHHHHHHHHhh-cCceEEEecCCccHHHHHHHHhcCCceEEeccchhhhhHhhcCCccccccccceee
Confidence 99999999999999999999987 556778899999999999999999999999999999887643 233567777999
Q ss_pred EecchhhhhcCcHHHHHHHHHHHhhcCccceEEEEccccCHHHHHHHhhhcCCCEEEEccCCCCcccCccceecCCCceE
Q psy15524 548 LDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQ 627 (930)
Q Consensus 548 lDEah~l~~~g~~~~l~~i~~~l~~~~~~~q~vl~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 627 (930)
+||||+|.++||++.+..|++.+ ++.+|+++||||+|..+..++...+..|+.+.+.... .+-+.+.+
T Consensus 521 ~deaDrmfdmgfePq~~~Ii~nl---rpdrQtvlfSatfpr~m~~la~~vl~~Pveiiv~~~s---------vV~k~V~q 588 (997)
T KOG0334|consen 521 LDEADRMFDMGFEPQITRILQNL---RPDRQTVLFSATFPRSMEALARKVLKKPVEIIVGGRS---------VVCKEVTQ 588 (997)
T ss_pred echhhhhheeccCcccchHHhhc---chhhhhhhhhhhhhHHHHHHHHHhhcCCeeEEEccce---------eEeccceE
Confidence 99999999999999998888777 4699999999999999999999999999987776543 34467888
Q ss_pred EEEEcC-chhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHHHHHHHHHHh
Q psy15524 628 HFIVTP-PKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTF 706 (930)
Q Consensus 628 ~~~~~~-~~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~v~~~F 706 (930)
.+.++. ...|+..|..+|..... ..++||||..++.|+.+.+.|.+. |+.+..+||+.++.+|..+++.|
T Consensus 589 ~v~V~~~e~eKf~kL~eLl~e~~e------~~~tiiFv~~qe~~d~l~~~L~~a---g~~~~slHGgv~q~dR~sti~df 659 (997)
T KOG0334|consen 589 VVRVCAIENEKFLKLLELLGERYE------DGKTIIFVDKQEKADALLRDLQKA---GYNCDSLHGGVDQHDRSSTIEDF 659 (997)
T ss_pred EEEEecCchHHHHHHHHHHHHHhh------cCCEEEEEcCchHHHHHHHHHHhc---CcchhhhcCCCchHHHHhHHHHH
Confidence 888888 88999999999887643 679999999999999999988864 88888899999999999999999
Q ss_pred hcCCCcEEEeccccccccCCCCccEEEEecCCCChhhHHhhhcccccCCCCceEEEEeCcccHHHHHHHH
Q psy15524 707 RSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPSEVKLVEELQ 776 (930)
Q Consensus 707 ~~~~~~vLv~T~~~~~GlDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~e~~~~~~l~ 776 (930)
+++..++||||++++||+|++.+.+||+||+|.-.++|+||+|||||+|+.|.|+.|+.|.+..+.-.|-
T Consensus 660 K~~~~~LLvaTsvvarGLdv~~l~Lvvnyd~pnh~edyvhR~gRTgragrkg~AvtFi~p~q~~~a~dl~ 729 (997)
T KOG0334|consen 660 KNGVVNLLVATSVVARGLDVKELILVVNYDFPNHYEDYVHRVGRTGRAGRKGAAVTFITPDQLKYAGDLC 729 (997)
T ss_pred hccCceEEEehhhhhcccccccceEEEEcccchhHHHHHHHhcccccCCccceeEEEeChHHhhhHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999997776655543
|
|
| >KOG0337|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-52 Score=425.64 Aligned_cols=358 Identities=34% Similarity=0.527 Sum_probs=323.7
Q ss_pred CCCCCCCCCCHHHHHHHHhcCCCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeE
Q psy15524 390 TSYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYA 469 (930)
Q Consensus 390 ~~f~~l~~l~~~~~~~l~~~~~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~ 469 (930)
-+|.++ ||+..+.+++.+ -||..|||+|+++||.+++++|++..|-||||||.||++|+++.+.... ..|.++
T Consensus 21 g~fqsm-gL~~~v~raI~k-kg~~~ptpiqRKTipliLe~~dvv~martgsgktaaf~ipm~e~Lk~~s-----~~g~Ra 93 (529)
T KOG0337|consen 21 GGFQSM-GLDYKVLRAIHK-KGFNTPTPIQRKTIPLILEGRDVVGMARTGSGKTAAFLIPMIEKLKSHS-----QTGLRA 93 (529)
T ss_pred CCcccc-CCCHHHHHHHHH-hhcCCCCchhcccccceeeccccceeeecCCcchhhHHHHHHHHHhhcc-----ccccce
Confidence 579999 999999999986 6999999999999999999999999999999999999999999998742 458899
Q ss_pred EEEccCHHHHHHHHHHHHHhhccCCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhccCCcccccceEEEEe
Q psy15524 470 VIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLD 549 (930)
Q Consensus 470 lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlD 549 (930)
++++|||+||.|+.+.++.+++. ......+++||.+...+...+..++|||++|||+++.+... ..+.++.+.|+|+|
T Consensus 94 lilsptreLa~qtlkvvkdlgrg-t~lr~s~~~ggD~~eeqf~~l~~npDii~ATpgr~~h~~ve-m~l~l~sveyVVfd 171 (529)
T KOG0337|consen 94 LILSPTRELALQTLKVVKDLGRG-TKLRQSLLVGGDSIEEQFILLNENPDIIIATPGRLLHLGVE-MTLTLSSVEYVVFD 171 (529)
T ss_pred eeccCcHHHHHHHHHHHHHhccc-cchhhhhhcccchHHHHHHHhccCCCEEEecCceeeeeehh-eeccccceeeeeeh
Confidence 99999999999999999998874 44567788999999999999999999999999999866554 34778999999999
Q ss_pred cchhhhhcCcHHHHHHHHHHHhhcCccceEEEEccccCHHHHHHHhhhcCCCEEEEccCCCCcccCccceecCCCceEEE
Q psy15524 550 EADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHF 629 (930)
Q Consensus 550 Eah~l~~~g~~~~l~~i~~~l~~~~~~~q~vl~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 629 (930)
|||++.++||.+.+..++..++. .+|+++||||+|..+-++++..+.+|..+.+.-+.. +.+.++..+
T Consensus 172 Eadrlfemgfqeql~e~l~rl~~---~~QTllfSatlp~~lv~fakaGl~~p~lVRldvetk---------ise~lk~~f 239 (529)
T KOG0337|consen 172 EADRLFEMGFQEQLHEILSRLPE---SRQTLLFSATLPRDLVDFAKAGLVPPVLVRLDVETK---------ISELLKVRF 239 (529)
T ss_pred hhhHHHhhhhHHHHHHHHHhCCC---cceEEEEeccCchhhHHHHHccCCCCceEEeehhhh---------cchhhhhhe
Confidence 99999999999999999999876 779999999999999999999999999888654432 335567788
Q ss_pred EEcCchhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHHHHHHHHHHhhcC
Q psy15524 630 IVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSV 709 (930)
Q Consensus 630 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~v~~~F~~~ 709 (930)
..+.+..|..+|...+...+. ..+++||+.|..+++++..++... |+....+.|.|++..|..-+.+|..+
T Consensus 240 ~~~~~a~K~aaLl~il~~~~~------~~~t~vf~~tk~hve~~~~ll~~~---g~~~s~iysslD~~aRk~~~~~F~~~ 310 (529)
T KOG0337|consen 240 FRVRKAEKEAALLSILGGRIK------DKQTIVFVATKHHVEYVRGLLRDF---GGEGSDIYSSLDQEARKINGRDFRGR 310 (529)
T ss_pred eeeccHHHHHHHHHHHhcccc------ccceeEEecccchHHHHHHHHHhc---CCCccccccccChHhhhhccccccCC
Confidence 889999999999988876543 568999999999999999999886 67777789999999999999999999
Q ss_pred CCcEEEeccccccccCCCCccEEEEecCCCChhhHHhhhcccccCCCCceEEEEeCcccHHHHHHHHh
Q psy15524 710 KSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPSEVKLVEELQN 777 (930)
Q Consensus 710 ~~~vLv~T~~~~~GlDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~e~~~~~~l~~ 777 (930)
+..+||.||+++||+|+|..+.||+||.|.+...|+||+||++|+|+.|.++.++.+.+..|+-.|..
T Consensus 311 k~~~lvvTdvaaRG~diplldnvinyd~p~~~klFvhRVgr~aragrtg~aYs~V~~~~~~yl~DL~l 378 (529)
T KOG0337|consen 311 KTSILVVTDVAARGLDIPLLDNVINYDFPPDDKLFVHRVGRVARAGRTGRAYSLVASTDDPYLLDLQL 378 (529)
T ss_pred ccceEEEehhhhccCCCccccccccccCCCCCceEEEEecchhhccccceEEEEEecccchhhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999888865
|
|
| >KOG0332|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-51 Score=414.67 Aligned_cols=363 Identities=26% Similarity=0.425 Sum_probs=306.8
Q ss_pred CccccCCCCCCCCCCCCCHHHHHHHHhcCCCCCCCHHHHHhHHhhhcC--CcEEEEccCCCchhHHhhHHHHHHHHhhCc
Q psy15524 382 VSEALFAPTSYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDG--GDVLVRSQTGSGKTLAYAIPIIQKLQEMRP 459 (930)
Q Consensus 382 ~~~~~~~~~~f~~l~~l~~~~~~~l~~~~~~~~~~~iQ~~~i~~il~~--~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~ 459 (930)
.++|+++..+|++| +|.|++++++.. |+|..|+.||+.|+|.++.. +++|.++..|+|||.||.+.++.++..
T Consensus 82 pnsPlyS~ksFeeL-~LkPellkgly~-M~F~kPskIQe~aLPlll~~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd~--- 156 (477)
T KOG0332|consen 82 PNSPLYSAKSFEEL-RLKPELLKGLYA-MKFQKPSKIQETALPLLLAEPPQNLIAQSQSGTGKTAAFVLTMLSRVDP--- 156 (477)
T ss_pred CCCCccccccHHhh-CCCHHHHhHHHH-hccCCcchHHHhhcchhhcCCchhhhhhhcCCCchhHHHHHHHHHhcCc---
Confidence 46788899999999 999999999985 99999999999999999975 889999999999999999999988753
Q ss_pred ccCCCCCeeEEEEccCHHHHHHHHHHHHHhhccCCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhccCCcc
Q psy15524 460 KISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLK 539 (930)
Q Consensus 460 ~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~ 539 (930)
...-+.+++|+||||||.|+.+++.+.++.. .+...+...|..... .-.-..+|+|+|||.+.+++...+.+.
T Consensus 157 ---~~~~PQ~iCLaPtrELA~Q~~eVv~eMGKf~-~ita~yair~sk~~r---G~~i~eqIviGTPGtv~Dlm~klk~id 229 (477)
T KOG0332|consen 157 ---DVVVPQCICLAPTRELAPQTGEVVEEMGKFT-ELTASYAIRGSKAKR---GNKLTEQIVIGTPGTVLDLMLKLKCID 229 (477)
T ss_pred ---cccCCCceeeCchHHHHHHHHHHHHHhcCce-eeeEEEEecCccccc---CCcchhheeeCCCccHHHHHHHHHhhC
Confidence 2346779999999999999999999998765 455666555542111 001125799999999999999878888
Q ss_pred cccceEEEEecchhhhhc-CcHHHHHHHHHHHhhcCccceEEEEccccCHHHHHHHhhhcCCCEEEEccCCCCcccCccc
Q psy15524 540 FSKVEHLVLDEADRILDQ-GYERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDS 618 (930)
Q Consensus 540 ~~~l~~lVlDEah~l~~~-g~~~~l~~i~~~l~~~~~~~q~vl~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~ 618 (930)
++.++.+|+||||.+++. ||.+.-..|...++ ++.|.++||||..+.+..++...+.++..+.+.....
T Consensus 230 ~~kikvfVlDEAD~Mi~tqG~~D~S~rI~~~lP---~~~QllLFSATf~e~V~~Fa~kivpn~n~i~Lk~eel------- 299 (477)
T KOG0332|consen 230 LEKIKVFVLDEADVMIDTQGFQDQSIRIMRSLP---RNQQLLLFSATFVEKVAAFALKIVPNANVIILKREEL------- 299 (477)
T ss_pred hhhceEEEecchhhhhhcccccccchhhhhhcC---CcceEEeeechhHHHHHHHHHHhcCCCceeeeehhhc-------
Confidence 999999999999998864 68888888887776 4899999999999999999999999887766544321
Q ss_pred eecCCCceEEEEEcCch-hhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHH
Q psy15524 619 LVIPDSLKQHFIVTPPK-LRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQS 697 (930)
Q Consensus 619 ~~~~~~~~~~~~~~~~~-~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~ 697 (930)
.-..++|.|+.|+.. .|+..+..+ ..... -+..||||.|++.+.+++..+... |..+..+||+|.-.
T Consensus 300 --~L~~IkQlyv~C~~~~~K~~~l~~l-yg~~t------igqsiIFc~tk~ta~~l~~~m~~~---Gh~V~~l~G~l~~~ 367 (477)
T KOG0332|consen 300 --ALDNIKQLYVLCACRDDKYQALVNL-YGLLT------IGQSIIFCHTKATAMWLYEEMRAE---GHQVSLLHGDLTVE 367 (477)
T ss_pred --cccchhhheeeccchhhHHHHHHHH-Hhhhh------hhheEEEEeehhhHHHHHHHHHhc---CceeEEeeccchhH
Confidence 124688999998765 577777663 32221 468999999999999999999874 89999999999999
Q ss_pred HHHHHHHHhhcCCCcEEEeccccccccCCCCccEEEEecCCC------ChhhHHhhhcccccCCCCceEEEEeCccc-HH
Q psy15524 698 ERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPS------SSTDYVHRVGRTARVGHEGSSLLFLIPSE-VK 770 (930)
Q Consensus 698 ~R~~v~~~F~~~~~~vLv~T~~~~~GlDip~v~~VI~~~~p~------s~~~y~qr~GRagR~g~~g~~~~~~~~~e-~~ 770 (930)
+|..+++.|+.|..+|||+|++++||+|++.|++||+||.|. +.++|+||+|||||.|+.|.++-|+...+ ..
T Consensus 368 ~R~~ii~~Fr~g~~kVLitTnV~ARGiDv~qVs~VvNydlP~~~~~~pD~etYlHRiGRtGRFGkkG~a~n~v~~~~s~~ 447 (477)
T KOG0332|consen 368 QRAAIIDRFREGKEKVLITTNVCARGIDVAQVSVVVNYDLPVKYTGEPDYETYLHRIGRTGRFGKKGLAINLVDDKDSMN 447 (477)
T ss_pred HHHHHHHHHhcCcceEEEEechhhcccccceEEEEEecCCccccCCCCCHHHHHHHhcccccccccceEEEeecccCcHH
Confidence 999999999999999999999999999999999999999995 78999999999999999999999888654 45
Q ss_pred HHHHHHhc
Q psy15524 771 LVEELQNR 778 (930)
Q Consensus 771 ~~~~l~~~ 778 (930)
.++.++++
T Consensus 448 ~mn~iq~~ 455 (477)
T KOG0332|consen 448 IMNKIQKH 455 (477)
T ss_pred HHHHHHHH
Confidence 67777664
|
|
| >KOG0327|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-50 Score=412.29 Aligned_cols=364 Identities=28% Similarity=0.502 Sum_probs=321.6
Q ss_pred CCCCCCCCCCHHHHHHHHhcCCCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeE
Q psy15524 390 TSYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYA 469 (930)
Q Consensus 390 ~~f~~l~~l~~~~~~~l~~~~~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~ 469 (930)
.+|+++ +|.+.+++.+. .+||+.|+.||++||.++..|.|+++++++|+|||.+|.+++++.+.. ......|
T Consensus 26 dsfddm-~L~e~LLrgiy-~yGFekPSaIQqraI~p~i~G~dv~~qaqsgTgKt~af~i~iLq~iD~------~~ke~qa 97 (397)
T KOG0327|consen 26 DSFDDM-NLKESLLRGIY-AYGFEKPSAIQQRAILPCIKGHDVIAQAQSGTGKTAAFLISILQQIDM------SVKETQA 97 (397)
T ss_pred hhhhhc-CCCHHHHhHHH-hhccCCchHHHhccccccccCCceeEeeeccccchhhhHHHHHhhcCc------chHHHHH
Confidence 479999 99999999998 589999999999999999999999999999999999999999998743 2345679
Q ss_pred EEEccCHHHHHHHHHHHHHhhccCCCcceEEEeCCCchHHHHHHH-hcCCcEEEECchhHHHhhhccCCcccccceEEEE
Q psy15524 470 VIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARI-RKGISILVATPGRLLDHCKHTETLKFSKVEHLVL 548 (930)
Q Consensus 470 lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~-~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVl 548 (930)
++++||||||.|+.++...++...+. .+..+.||.+...+...+ ..+++|+++||||+.+.+... .+..+.++++|+
T Consensus 98 lilaPtreLa~qi~~v~~~lg~~~~~-~v~~~igg~~~~~~~~~i~~~~~hivvGTpgrV~dml~~~-~l~~~~iKmfvl 175 (397)
T KOG0327|consen 98 LILAPTRELAQQIQKVVRALGDHMDV-SVHACIGGTNVRREDQALLKDKPHIVVGTPGRVFDMLNRG-SLSTDGIKMFVL 175 (397)
T ss_pred HHhcchHHHHHHHHHHHHhhhcccce-eeeeecCcccchhhhhhhhccCceeecCCchhHHHhhccc-cccccceeEEee
Confidence 99999999999999998888876554 444456666665444444 456899999999999998774 677888999999
Q ss_pred ecchhhhhcCcHHHHHHHHHHHhhcCccceEEEEccccCHHHHHHHhhhcCCCEEEEccCCCCcccCccceecCCCceEE
Q psy15524 549 DEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQH 628 (930)
Q Consensus 549 DEah~l~~~g~~~~l~~i~~~l~~~~~~~q~vl~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 628 (930)
||||.++..||.+.+..|.+.++. +.|++++|||.|.++.+..+.++.+|+.+.+.... ...+.++|.
T Consensus 176 DEaDEmLs~gfkdqI~~if~~lp~---~vQv~l~SAT~p~~vl~vt~~f~~~pv~i~vkk~~---------ltl~gikq~ 243 (397)
T KOG0327|consen 176 DEADEMLSRGFKDQIYDIFQELPS---DVQVVLLSATMPSDVLEVTKKFMREPVRILVKKDE---------LTLEGIKQF 243 (397)
T ss_pred cchHhhhccchHHHHHHHHHHcCc---chhheeecccCcHHHHHHHHHhccCceEEEecchh---------hhhhheeee
Confidence 999999999999999999999876 78999999999999999999999999999887654 124678899
Q ss_pred EEEcCchhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHHHHHHHHHHhhc
Q psy15524 629 FIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRS 708 (930)
Q Consensus 629 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~v~~~F~~ 708 (930)
|+.+..+.|+..|..+... -...+|||+|++.+..+...|... +..+..+||.|.+.+|..+.+.|+.
T Consensus 244 ~i~v~k~~k~~~l~dl~~~---------~~q~~if~nt~r~v~~l~~~L~~~---~~~~s~~~~d~~q~~R~~~~~ef~~ 311 (397)
T KOG0327|consen 244 YINVEKEEKLDTLCDLYRR---------VTQAVIFCNTRRKVDNLTDKLRAH---GFTVSAIHGDMEQNERDTLMREFRS 311 (397)
T ss_pred eeeccccccccHHHHHHHh---------hhcceEEecchhhHHHHHHHHhhC---CceEEEeecccchhhhhHHHHHhhc
Confidence 9999888899999888762 468899999999999999999654 7888899999999999999999999
Q ss_pred CCCcEEEeccccccccCCCCccEEEEecCCCChhhHHhhhcccccCCCCceEEEEeCcccHHHHHHHHh-cCCccchhch
Q psy15524 709 VKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPSEVKLVEELQN-RRIRIEEIKL 787 (930)
Q Consensus 709 ~~~~vLv~T~~~~~GlDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~e~~~~~~l~~-~~~~~~~~~~ 787 (930)
|..+|||+|+.++||+|+..++.||+|+.|.....|+||+||+||.|++|.++.|+..++...++.+++ ++.++++.+.
T Consensus 312 gssrvlIttdl~argidv~~~slvinydlP~~~~~yihR~gr~gr~grkg~~in~v~~~d~~~lk~ie~~y~~~i~e~p~ 391 (397)
T KOG0327|consen 312 GSSRVLITTDLLARGIDVQQVSLVVNYDLPARKENYIHRIGRAGRFGRKGVAINFVTEEDVRDLKDIEKFYNTPIEELPS 391 (397)
T ss_pred CCceEEeeccccccccchhhcceeeeeccccchhhhhhhcccccccCCCceeeeeehHhhHHHHHhHHHhcCCcceeccc
Confidence 999999999999999999999999999999999999999999999999999999999999988888875 4677776653
|
|
| >TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-48 Score=463.03 Aligned_cols=346 Identities=20% Similarity=0.266 Sum_probs=267.4
Q ss_pred CCCHHHHHHHHhcCCCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCH
Q psy15524 397 GIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTR 476 (930)
Q Consensus 397 ~l~~~~~~~l~~~~~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~Ptr 476 (930)
.+++.+.+.|.+ +||..|+++|.++||.+++|+|+++.+|||||||+||++|+++.+.. ..+.++|||+|||
T Consensus 20 ~l~~~l~~~L~~-~g~~~p~~~Q~~ai~~il~G~nvvv~apTGSGKTla~~LPiL~~l~~-------~~~~~aL~l~Ptr 91 (742)
T TIGR03817 20 WAHPDVVAALEA-AGIHRPWQHQARAAELAHAGRHVVVATGTASGKSLAYQLPVLSALAD-------DPRATALYLAPTK 91 (742)
T ss_pred cCCHHHHHHHHH-cCCCcCCHHHHHHHHHHHCCCCEEEECCCCCcHHHHHHHHHHHHHhh-------CCCcEEEEEcChH
Confidence 489999999974 89999999999999999999999999999999999999999999875 2467899999999
Q ss_pred HHHHHHHHHHHHhhccCCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhcc-C--CcccccceEEEEecchh
Q psy15524 477 ELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHT-E--TLKFSKVEHLVLDEADR 553 (930)
Q Consensus 477 eLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~-~--~~~~~~l~~lVlDEah~ 553 (930)
|||.|+.+.++++. ...+.+..+.|+.. ..+...++.+++|+|+||++|...+... . ...++++++||+||||+
T Consensus 92 aLa~q~~~~l~~l~--~~~i~v~~~~Gdt~-~~~r~~i~~~~~IivtTPd~L~~~~L~~~~~~~~~l~~l~~vViDEah~ 168 (742)
T TIGR03817 92 ALAADQLRAVRELT--LRGVRPATYDGDTP-TEERRWAREHARYVLTNPDMLHRGILPSHARWARFLRRLRYVVIDECHS 168 (742)
T ss_pred HHHHHHHHHHHHhc--cCCeEEEEEeCCCC-HHHHHHHhcCCCEEEEChHHHHHhhccchhHHHHHHhcCCEEEEeChhh
Confidence 99999999999886 22344555556554 4555667788999999999986433211 1 12378999999999999
Q ss_pred hhhcCcHHHHHHHHHHHhh----cCccceEEEEccccCHHHHHHHhhhcCCCEEEEccCCCCcccCccceecCCCceEEE
Q psy15524 554 ILDQGYERDIAEFLEILKK----QKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHF 629 (930)
Q Consensus 554 l~~~g~~~~l~~i~~~l~~----~~~~~q~vl~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 629 (930)
+.+ .|+..+..+++.+.. ...++|++++|||+++... ++...+.+|..+...+.. |....+..
T Consensus 169 ~~g-~fg~~~~~il~rL~ri~~~~g~~~q~i~~SATi~n~~~-~~~~l~g~~~~~i~~~~~-----------~~~~~~~~ 235 (742)
T TIGR03817 169 YRG-VFGSHVALVLRRLRRLCARYGASPVFVLASATTADPAA-AASRLIGAPVVAVTEDGS-----------PRGARTVA 235 (742)
T ss_pred ccC-ccHHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCCHHH-HHHHHcCCCeEEECCCCC-----------CcCceEEE
Confidence 976 477777777666643 3457899999999998755 566666666543211110 01111111
Q ss_pred EEcCc-----------------hhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCC-----CceE
Q psy15524 630 IVTPP-----------------KLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGE-----NIAF 687 (930)
Q Consensus 630 ~~~~~-----------------~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~-----~~~~ 687 (930)
...+. ..+...+...+.. +.++||||+|++.++.++..+.+.+.. +..+
T Consensus 236 ~~~p~~~~~~~~~~~~~r~~~~~~~~~~l~~l~~~---------~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v 306 (742)
T TIGR03817 236 LWEPPLTELTGENGAPVRRSASAEAADLLADLVAE---------GARTLTFVRSRRGAELVAAIARRLLGEVDPDLAERV 306 (742)
T ss_pred EecCCccccccccccccccchHHHHHHHHHHHHHC---------CCCEEEEcCCHHHHHHHHHHHHHHHHhhccccccch
Confidence 11111 1222333333321 569999999999999999988765322 3466
Q ss_pred EEecCCCCHHHHHHHHHHhhcCCCcEEEeccccccccCCCCccEEEEecCCCChhhHHhhhcccccCCCCceEEEEeCc-
Q psy15524 688 FKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIP- 766 (930)
Q Consensus 688 ~~lhg~~~~~~R~~v~~~F~~~~~~vLv~T~~~~~GlDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~g~~~~~~~~- 766 (930)
..+||++++++|..++++|++|+.++|||||+++||||+|++++||++|.|.+..+|+||+|||||.|+.|.++++...
T Consensus 307 ~~~hgg~~~~eR~~ie~~f~~G~i~vLVaTd~lerGIDI~~vd~VI~~~~P~s~~~y~qRiGRaGR~G~~g~ai~v~~~~ 386 (742)
T TIGR03817 307 AAYRAGYLPEDRRELERALRDGELLGVATTNALELGVDISGLDAVVIAGFPGTRASLWQQAGRAGRRGQGALVVLVARDD 386 (742)
T ss_pred hheecCCCHHHHHHHHHHHHcCCceEEEECchHhccCCcccccEEEEeCCCCCHHHHHHhccccCCCCCCcEEEEEeCCC
Confidence 7889999999999999999999999999999999999999999999999999999999999999999999999998874
Q ss_pred -ccHHHHHHH
Q psy15524 767 -SEVKLVEEL 775 (930)
Q Consensus 767 -~e~~~~~~l 775 (930)
.|..++...
T Consensus 387 ~~d~~~~~~~ 396 (742)
T TIGR03817 387 PLDTYLVHHP 396 (742)
T ss_pred hHHHHHHhCH
Confidence 444444433
|
A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA. |
| >KOG4284|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-49 Score=418.06 Aligned_cols=349 Identities=27% Similarity=0.412 Sum_probs=306.2
Q ss_pred CCCCCCCCCCCHHHHHHHHhcCCCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCee
Q psy15524 389 PTSYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIY 468 (930)
Q Consensus 389 ~~~f~~l~~l~~~~~~~l~~~~~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~ 468 (930)
...|+++ .|...++..|+. .+|..||+||..|||.++.+-|+||+|..|+|||++|.+.+++.+.. +...+.
T Consensus 24 ~~~fe~l-~l~r~vl~glrr-n~f~~ptkiQaaAIP~~~~kmDliVQaKSGTGKTlVfsv~av~sl~~------~~~~~q 95 (980)
T KOG4284|consen 24 TPGFEQL-ALWREVLLGLRR-NAFALPTKIQAAAIPAIFSKMDLIVQAKSGTGKTLVFSVLAVESLDS------RSSHIQ 95 (980)
T ss_pred CCCHHHH-HHHHHHHHHHHh-hcccCCCchhhhhhhhhhcccceEEEecCCCCceEEEEeeeehhcCc------ccCcce
Confidence 3568888 788889999975 69999999999999999999999999999999999999999988764 355788
Q ss_pred EEEEccCHHHHHHHHHHHHHhhccCCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhccCCcccccceEEEE
Q psy15524 469 AVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVL 548 (930)
Q Consensus 469 ~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVl 548 (930)
++||+||||+|.|+.+.+.+++..+....+.++.||+.......++. .++|+|+||||+.++... ..++.++++++|+
T Consensus 96 ~~Iv~PTREiaVQI~~tv~~v~~sf~g~~csvfIGGT~~~~d~~rlk-~~rIvIGtPGRi~qL~el-~~~n~s~vrlfVL 173 (980)
T KOG4284|consen 96 KVIVTPTREIAVQIKETVRKVAPSFTGARCSVFIGGTAHKLDLIRLK-QTRIVIGTPGRIAQLVEL-GAMNMSHVRLFVL 173 (980)
T ss_pred eEEEecchhhhhHHHHHHHHhcccccCcceEEEecCchhhhhhhhhh-hceEEecCchHHHHHHHh-cCCCccceeEEEe
Confidence 99999999999999999999999999999999999998887777775 588999999999988876 7789999999999
Q ss_pred ecchhhhhc-CcHHHHHHHHHHHhhcCccceEEEEccccCHHHHHHHhhhcCCCEEEEccCCCCcccCccceecCCCceE
Q psy15524 549 DEADRILDQ-GYERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQ 627 (930)
Q Consensus 549 DEah~l~~~-g~~~~l~~i~~~l~~~~~~~q~vl~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 627 (930)
||||.+++. .|...+..|++.|++ .+|+++||||.|..+..++..++++|.++....... ..-+++|
T Consensus 174 DEADkL~~t~sfq~~In~ii~slP~---~rQv~a~SATYp~nLdn~Lsk~mrdp~lVr~n~~d~---------~L~GikQ 241 (980)
T KOG4284|consen 174 DEADKLMDTESFQDDINIIINSLPQ---IRQVAAFSATYPRNLDNLLSKFMRDPALVRFNADDV---------QLFGIKQ 241 (980)
T ss_pred ccHHhhhchhhHHHHHHHHHHhcch---hheeeEEeccCchhHHHHHHHHhcccceeecccCCc---------eeechhh
Confidence 999999995 499999999999987 789999999999999999999999999998754321 1235677
Q ss_pred EEEEcCch--------hhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHHHH
Q psy15524 628 HFIVTPPK--------LRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSER 699 (930)
Q Consensus 628 ~~~~~~~~--------~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R 699 (930)
+++..+.. .++..|-..+... +-.+.||||+....|+.++..|+.. |+.+..+.|.|+|.+|
T Consensus 242 yv~~~~s~nnsveemrlklq~L~~vf~~i-------py~QAlVF~~~~sra~~~a~~L~ss---G~d~~~ISgaM~Q~~R 311 (980)
T KOG4284|consen 242 YVVAKCSPNNSVEEMRLKLQKLTHVFKSI-------PYVQALVFCDQISRAEPIATHLKSS---GLDVTFISGAMSQKDR 311 (980)
T ss_pred eeeeccCCcchHHHHHHHHHHHHHHHhhC-------chHHHHhhhhhhhhhhHHHHHhhcc---CCCeEEeccccchhHH
Confidence 77655443 2344444333321 2458899999999999999999874 8999999999999999
Q ss_pred HHHHHHhhcCCCcEEEeccccccccCCCCccEEEEecCCCChhhHHhhhcccccCCCCceEEEEeCcccH
Q psy15524 700 TEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPSEV 769 (930)
Q Consensus 700 ~~v~~~F~~~~~~vLv~T~~~~~GlDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~e~ 769 (930)
..+++.+++-..+|||+||..+||||-|+|++||+.|+|.+..+|.||||||||.|..|.++.|+...+.
T Consensus 312 l~a~~~lr~f~~rILVsTDLtaRGIDa~~vNLVVNiD~p~d~eTY~HRIGRAgRFG~~G~aVT~~~~~~e 381 (980)
T KOG4284|consen 312 LLAVDQLRAFRVRILVSTDLTARGIDADNVNLVVNIDAPADEETYFHRIGRAGRFGAHGAAVTLLEDERE 381 (980)
T ss_pred HHHHHHhhhceEEEEEecchhhccCCccccceEEecCCCcchHHHHHHhhhcccccccceeEEEeccchh
Confidence 9999999999999999999999999999999999999999999999999999999999999999987554
|
|
| >PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-47 Score=443.31 Aligned_cols=346 Identities=21% Similarity=0.290 Sum_probs=263.5
Q ss_pred CCCCC--CCCCCHHHHHHHHhcCCCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCe
Q psy15524 390 TSYEE--FPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGI 467 (930)
Q Consensus 390 ~~f~~--l~~l~~~~~~~l~~~~~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~ 467 (930)
..|.. | .....+...+.+.||+..++|+|.++|+.++.|+|+++.||||+|||+||++|++.. +.
T Consensus 435 ~~W~~~~f-pw~~~L~~~lk~~FG~~sFRp~Q~eaI~aiL~GrDVLVimPTGSGKSLcYQLPAL~~------------~G 501 (1195)
T PLN03137 435 KKWSSRNF-PWTKKLEVNNKKVFGNHSFRPNQREIINATMSGYDVFVLMPTGGGKSLTYQLPALIC------------PG 501 (1195)
T ss_pred ccccccCC-CchHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHHHHHHHHHHHc------------CC
Confidence 34553 4 455667777888899999999999999999999999999999999999999999842 34
Q ss_pred eEEEEccCHHHHHHHHHHHHHhhccCCCcceEEEeCCCchHHHHHHHh------cCCcEEEECchhHHH---hhhccCCc
Q psy15524 468 YAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIR------KGISILVATPGRLLD---HCKHTETL 538 (930)
Q Consensus 468 ~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~------~~~~Ilv~Tp~rl~~---~l~~~~~~ 538 (930)
.+|||+|+++|+.++...+... .+.+..+.++.....+...+. ..++|+|+|||+|.. ++.....+
T Consensus 502 iTLVISPLiSLmqDQV~~L~~~-----GI~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L 576 (1195)
T PLN03137 502 ITLVISPLVSLIQDQIMNLLQA-----NIPAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLENL 576 (1195)
T ss_pred cEEEEeCHHHHHHHHHHHHHhC-----CCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHhh
Confidence 6999999999998766665543 245667788876655444332 358999999999852 12211111
Q ss_pred -ccccceEEEEecchhhhhcC--cHHHHHHHHHHHhhcCccceEEEEccccCHHHHHHHhhhc--CCCEEEEccCCCCcc
Q psy15524 539 -KFSKVEHLVLDEADRILDQG--YERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTL--QNPIQIDAADSTDIH 613 (930)
Q Consensus 539 -~~~~l~~lVlDEah~l~~~g--~~~~l~~i~~~l~~~~~~~q~vl~SAT~~~~~~~l~~~~~--~~~~~i~~~~~~~~~ 613 (930)
....+.+|||||||++++|| |+..+..+ ..+....+..++++||||++..+...+...+ .++..+....
T Consensus 577 ~~~~~LslIVIDEAHcVSqWGhDFRpdYr~L-~~Lr~~fp~vPilALTATAT~~V~eDI~~~L~l~~~~vfr~Sf----- 650 (1195)
T PLN03137 577 NSRGLLARFVIDEAHCVSQWGHDFRPDYQGL-GILKQKFPNIPVLALTATATASVKEDVVQALGLVNCVVFRQSF----- 650 (1195)
T ss_pred hhccccceeccCcchhhhhcccchHHHHHHH-HHHHHhCCCCCeEEEEecCCHHHHHHHHHHcCCCCcEEeeccc-----
Confidence 23458999999999999998 66766654 2333334578999999999998776444333 2333322110
Q ss_pred cCccceecCCCceEEEEEcCchhh-HHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCCceEEEecC
Q psy15524 614 NTTDSLVIPDSLKQHFIVTPPKLR-LVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHG 692 (930)
Q Consensus 614 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg 692 (930)
..| . ..|.+++...+ ...+..++.... .+...||||.|++.++.+++.|... |+.+..+||
T Consensus 651 ------~Rp-N--L~y~Vv~k~kk~le~L~~~I~~~~------~~esgIIYC~SRke~E~LAe~L~~~---Gika~~YHA 712 (1195)
T PLN03137 651 ------NRP-N--LWYSVVPKTKKCLEDIDKFIKENH------FDECGIIYCLSRMDCEKVAERLQEF---GHKAAFYHG 712 (1195)
T ss_pred ------Ccc-c--eEEEEeccchhHHHHHHHHHHhcc------cCCCceeEeCchhHHHHHHHHHHHC---CCCeeeeeC
Confidence 011 1 13333333322 334444443211 1457899999999999999999874 888999999
Q ss_pred CCCHHHHHHHHHHhhcCCCcEEEeccccccccCCCCccEEEEecCCCChhhHHhhhcccccCCCCceEEEEeCcccHHHH
Q psy15524 693 SMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPSEVKLV 772 (930)
Q Consensus 693 ~~~~~~R~~v~~~F~~~~~~vLv~T~~~~~GlDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~e~~~~ 772 (930)
+|++.+|..++++|..|+.+|||||++++||||+|+|++||||++|.+++.|+||+|||||.|.+|.|++|+.+.+...+
T Consensus 713 GLs~eeR~~vqe~F~~Gei~VLVATdAFGMGIDkPDVR~VIHydlPkSiEsYyQriGRAGRDG~~g~cILlys~~D~~~~ 792 (1195)
T PLN03137 713 SMDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDYIRV 792 (1195)
T ss_pred CCCHHHHHHHHHHHhcCCCcEEEEechhhcCCCccCCcEEEEcCCCCCHHHHHhhhcccCCCCCCceEEEEecHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999888777
Q ss_pred HHHHh
Q psy15524 773 EELQN 777 (930)
Q Consensus 773 ~~l~~ 777 (930)
+.+..
T Consensus 793 ~~lI~ 797 (1195)
T PLN03137 793 KHMIS 797 (1195)
T ss_pred HHHHh
Confidence 76654
|
|
| >TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-46 Score=430.91 Aligned_cols=332 Identities=22% Similarity=0.331 Sum_probs=254.3
Q ss_pred HHhcCCCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHH
Q psy15524 406 LNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEI 485 (930)
Q Consensus 406 l~~~~~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~ 485 (930)
|++.|||..|+|+|.++|+.+++|+|+++.||||||||+||++|++.. +..+|||+||++|+.|+.+.
T Consensus 3 l~~~~g~~~~r~~Q~~ai~~~l~g~dvlv~apTGsGKTl~y~lp~l~~------------~~~~lVi~P~~~L~~dq~~~ 70 (470)
T TIGR00614 3 LKTVFGLSSFRPVQLEVINAVLLGRDCFVVMPTGGGKSLCYQLPALCS------------DGITLVISPLISLMEDQVLQ 70 (470)
T ss_pred hHhhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHhHHHHHHHHHc------------CCcEEEEecHHHHHHHHHHH
Confidence 556799999999999999999999999999999999999999999731 34689999999999999998
Q ss_pred HHHhhccCCCcceEEEeCCCchHHHH---HHH-hcCCcEEEECchhHHHhhhccCCc-ccccceEEEEecchhhhhcC--
Q psy15524 486 FTKLCKSFTWIVPSWLTGGEKMKSEK---ARI-RKGISILVATPGRLLDHCKHTETL-KFSKVEHLVLDEADRILDQG-- 558 (930)
Q Consensus 486 ~~~~~~~~~~~~~~~~~gg~~~~~~~---~~~-~~~~~Ilv~Tp~rl~~~l~~~~~~-~~~~l~~lVlDEah~l~~~g-- 558 (930)
+..++ +....+.++....... ..+ ....+|+++||+++.........+ ...+++++||||||++++||
T Consensus 71 l~~~g-----i~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iViDEaH~i~~~g~~ 145 (470)
T TIGR00614 71 LKASG-----IPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITLIAVDEAHCISQWGHD 145 (470)
T ss_pred HHHcC-----CcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCEEEEeCCcccCccccc
Confidence 87643 2344555554433221 122 234899999999985432111112 46789999999999999988
Q ss_pred cHHHHHHHHHHHhhcCccceEEEEccccCHHHHHHHhhh--cCCCEEEEccCCCCcccCccceecCCCceEEEEEcCch-
Q psy15524 559 YERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMT--LQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPK- 635 (930)
Q Consensus 559 ~~~~l~~i~~~l~~~~~~~q~vl~SAT~~~~~~~l~~~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 635 (930)
|...+..+.... ...++.+++++|||+++.+....... +.+|..+...... ..+ .+......
T Consensus 146 fr~~~~~l~~l~-~~~~~~~~l~lTAT~~~~~~~di~~~l~l~~~~~~~~s~~r------------~nl--~~~v~~~~~ 210 (470)
T TIGR00614 146 FRPDYKALGSLK-QKFPNVPIMALTATASPSVREDILRQLNLKNPQIFCTSFDR------------PNL--YYEVRRKTP 210 (470)
T ss_pred cHHHHHHHHHHH-HHcCCCceEEEecCCCHHHHHHHHHHcCCCCCcEEeCCCCC------------CCc--EEEEEeCCc
Confidence 566665553333 33357899999999999865543333 3455443321110 111 12222221
Q ss_pred hhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHHHHHHHHHHhhcCCCcEEE
Q psy15524 636 LRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSVKSGVLI 715 (930)
Q Consensus 636 ~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~v~~~F~~~~~~vLv 715 (930)
.....+..++.... .+..+||||+|++.++.+++.|... ++.+..+||+|++++|..+++.|++|+.+|||
T Consensus 211 ~~~~~l~~~l~~~~------~~~~~IIF~~s~~~~e~la~~L~~~---g~~~~~~H~~l~~~eR~~i~~~F~~g~~~vLV 281 (470)
T TIGR00614 211 KILEDLLRFIRKEF------KGKSGIIYCPSRKKSEQVTASLQNL---GIAAGAYHAGLEISARDDVHHKFQRDEIQVVV 281 (470)
T ss_pred cHHHHHHHHHHHhc------CCCceEEEECcHHHHHHHHHHHHhc---CCCeeEeeCCCCHHHHHHHHHHHHcCCCcEEE
Confidence 33444555554311 2556799999999999999999875 78889999999999999999999999999999
Q ss_pred eccccccccCCCCccEEEEecCCCChhhHHhhhcccccCCCCceEEEEeCcccHHHHHHHHhc
Q psy15524 716 CTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPSEVKLVEELQNR 778 (930)
Q Consensus 716 ~T~~~~~GlDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~e~~~~~~l~~~ 778 (930)
||+++++|+|+|+|++||++++|.+++.|+||+|||||.|.+|.|++|+.+.+...++.+...
T Consensus 282 aT~~~~~GID~p~V~~VI~~~~P~s~~~y~Qr~GRaGR~G~~~~~~~~~~~~d~~~~~~~~~~ 344 (470)
T TIGR00614 282 ATVAFGMGINKPDVRFVIHYSLPKSMESYYQESGRAGRDGLPSECHLFYAPADINRLRRLLME 344 (470)
T ss_pred EechhhccCCcccceEEEEeCCCCCHHHHHhhhcCcCCCCCCceEEEEechhHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999999999888887543
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >KOG0344|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-47 Score=406.30 Aligned_cols=359 Identities=28% Similarity=0.442 Sum_probs=295.9
Q ss_pred CCCHHHHHHHHhcCCCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCH
Q psy15524 397 GIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTR 476 (930)
Q Consensus 397 ~l~~~~~~~l~~~~~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~Ptr 476 (930)
..++.++..+.+ .+|..|+|+|.+|||.++.++|+++|||||||||++|.+|+++++..... .....|.+++|+.|||
T Consensus 142 ~~~~~ll~nl~~-~~F~~Pt~iq~~aipvfl~~r~~lAcapTGsgKtlaf~~Pil~~L~~~~~-~~~~~gl~a~Il~ptr 219 (593)
T KOG0344|consen 142 SMNKRLLENLQE-LGFDEPTPIQKQAIPVFLEKRDVLACAPTGSGKTLAFNLPILQHLKDLSQ-EKHKVGLRALILSPTR 219 (593)
T ss_pred hhcHHHHHhHhh-CCCCCCCcccchhhhhhhcccceEEeccCCCcchhhhhhHHHHHHHHhhc-ccCccceEEEEecchH
Confidence 578888888874 79999999999999999999999999999999999999999999987432 1235689999999999
Q ss_pred HHHHHHHHHHHHhhccCCC-cceEEEeCC-CchHHHHHHHhcCCcEEEECchhHHHhhhccC-CcccccceEEEEecchh
Q psy15524 477 ELALQTLEIFTKLCKSFTW-IVPSWLTGG-EKMKSEKARIRKGISILVATPGRLLDHCKHTE-TLKFSKVEHLVLDEADR 553 (930)
Q Consensus 477 eLa~Q~~~~~~~~~~~~~~-~~~~~~~gg-~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~-~~~~~~l~~lVlDEah~ 553 (930)
+||.|++.++.++....+. .....+... .............++|+|+||-++..++.... .+.+..+.++|+||||+
T Consensus 220 eLa~Qi~re~~k~~~~~~t~~~a~~~~~~~~~~qk~a~~~~~k~dili~TP~ri~~~~~~~~~~idl~~V~~lV~dEaD~ 299 (593)
T KOG0344|consen 220 ELAAQIYREMRKYSIDEGTSLRAAQFSKPAYPSQKPAFLSDEKYDILISTPMRIVGLLGLGKLNIDLSKVEWLVVDEADL 299 (593)
T ss_pred HHHHHHHHHHHhcCCCCCCchhhhhcccccchhhccchhHHHHHHHHhcCHHHHHHHhcCCCccchhheeeeEeechHHh
Confidence 9999999999998732111 111111111 11111112223457999999999998887632 35789999999999999
Q ss_pred hhhc-CcHHHHHHHHHHHhhcCccceEEEEccccCHHHHHHHhhhcCCCEEEEccCCCCcccCccceecCCCceEEEEEc
Q psy15524 554 ILDQ-GYERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVT 632 (930)
Q Consensus 554 l~~~-g~~~~l~~i~~~l~~~~~~~q~vl~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 632 (930)
+.+. +|..++..|+..+.. ++..+-+||||.+..+++|+...+.++..+.+...... -..+.|..+.+
T Consensus 300 lfe~~~f~~Qla~I~sac~s--~~i~~a~FSat~~~~VEE~~~~i~~~~~~vivg~~~sa---------~~~V~QelvF~ 368 (593)
T KOG0344|consen 300 LFEPEFFVEQLADIYSACQS--PDIRVALFSATISVYVEEWAELIKSDLKRVIVGLRNSA---------NETVDQELVFC 368 (593)
T ss_pred hhChhhHHHHHHHHHHHhcC--cchhhhhhhccccHHHHHHHHHhhccceeEEEecchhH---------hhhhhhhheee
Confidence 9999 899999999999875 68888999999999999999999999888776544221 13455555544
Q ss_pred -CchhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHHHHHHHHHHhhcCCC
Q psy15524 633 -PPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSVKS 711 (930)
Q Consensus 633 -~~~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~v~~~F~~~~~ 711 (930)
....|+.++...+..-. ..+++||+.+.+.+..+++.|.. -.++.+..+||..++.+|.+++++|+.|++
T Consensus 369 gse~~K~lA~rq~v~~g~-------~PP~lIfVQs~eRak~L~~~L~~--~~~i~v~vIh~e~~~~qrde~~~~FR~g~I 439 (593)
T KOG0344|consen 369 GSEKGKLLALRQLVASGF-------KPPVLIFVQSKERAKQLFEELEI--YDNINVDVIHGERSQKQRDETMERFRIGKI 439 (593)
T ss_pred ecchhHHHHHHHHHhccC-------CCCeEEEEecHHHHHHHHHHhhh--ccCcceeeEecccchhHHHHHHHHHhccCe
Confidence 45678888877776532 67999999999999999998862 247888889999999999999999999999
Q ss_pred cEEEeccccccccCCCCccEEEEecCCCChhhHHhhhcccccCCCCceEEEEeCcccHHHHHHHHh
Q psy15524 712 GVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPSEVKLVEELQN 777 (930)
Q Consensus 712 ~vLv~T~~~~~GlDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~e~~~~~~l~~ 777 (930)
.||+||++++||+|+.+|++||+||.|.+...|+||+||+||+|+.|.++.|++..+.++++-+.+
T Consensus 440 wvLicTdll~RGiDf~gvn~VInyD~p~s~~syihrIGRtgRag~~g~Aitfytd~d~~~ir~iae 505 (593)
T KOG0344|consen 440 WVLICTDLLARGIDFKGVNLVINYDFPQSDLSYIHRIGRTGRAGRSGKAITFYTDQDMPRIRSIAE 505 (593)
T ss_pred eEEEehhhhhccccccCcceEEecCCCchhHHHHHHhhccCCCCCCcceEEEeccccchhhhhHHH
Confidence 999999999999999999999999999999999999999999999999999999998888777654
|
|
| >PRK02362 ski2-like helicase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-45 Score=440.08 Aligned_cols=381 Identities=22% Similarity=0.276 Sum_probs=279.5
Q ss_pred CCCCCCCCCHHHHHHHHhcCCCCCCCHHHHHhHHh-hhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeE
Q psy15524 391 SYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQP-ILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYA 469 (930)
Q Consensus 391 ~f~~l~~l~~~~~~~l~~~~~~~~~~~iQ~~~i~~-il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~ 469 (930)
.|+++ +|++.+.+.+.+ .||.+|+|+|.+|++. +++|+|++++||||||||++|.+|+++.+.. +.++
T Consensus 2 ~~~~l-~lp~~~~~~l~~-~g~~~l~p~Q~~ai~~~~~~g~nvlv~APTGSGKTlia~lail~~l~~---------~~ka 70 (737)
T PRK02362 2 KIAEL-PLPEGVIEFYEA-EGIEELYPPQAEAVEAGLLDGKNLLAAIPTASGKTLIAELAMLKAIAR---------GGKA 70 (737)
T ss_pred Chhhc-CCCHHHHHHHHh-CCCCcCCHHHHHHHHHHHhCCCcEEEECCCcchHHHHHHHHHHHHHhc---------CCcE
Confidence 58889 899999999985 8999999999999998 7789999999999999999999999998853 5679
Q ss_pred EEEccCHHHHHHHHHHHHHhhccCCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhccCCcccccceEEEEe
Q psy15524 470 VIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLD 549 (930)
Q Consensus 470 lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlD 549 (930)
||++||++||.|+++.|+++.. ++ ..+..++|+...... .....+|+|+||+++..++++. ...+++++++|+|
T Consensus 71 l~i~P~raLa~q~~~~~~~~~~-~g-~~v~~~tGd~~~~~~---~l~~~~IiV~Tpek~~~llr~~-~~~l~~v~lvViD 144 (737)
T PRK02362 71 LYIVPLRALASEKFEEFERFEE-LG-VRVGISTGDYDSRDE---WLGDNDIIVATSEKVDSLLRNG-APWLDDITCVVVD 144 (737)
T ss_pred EEEeChHHHHHHHHHHHHHhhc-CC-CEEEEEeCCcCcccc---ccCCCCEEEECHHHHHHHHhcC-hhhhhhcCEEEEE
Confidence 9999999999999999997643 33 456677787654332 2346899999999999988763 3457899999999
Q ss_pred cchhhhhcCcHHHHHHHHHHHhhcCccceEEEEccccCH--HHHHHHhhhcC----CCEEEEccCCCCcccCccceecCC
Q psy15524 550 EADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTP--AVQRLAGMTLQ----NPIQIDAADSTDIHNTTDSLVIPD 623 (930)
Q Consensus 550 Eah~l~~~g~~~~l~~i~~~l~~~~~~~q~vl~SAT~~~--~~~~l~~~~~~----~~~~i~~~~~~~~~~~~~~~~~~~ 623 (930)
|+|.+.+.+++..++.++..+....++.|++++|||+++ ++..|.+.... .|+.+...-.. ......+.
T Consensus 145 E~H~l~d~~rg~~le~il~rl~~~~~~~qii~lSATl~n~~~la~wl~~~~~~~~~rpv~l~~~v~~-----~~~~~~~~ 219 (737)
T PRK02362 145 EVHLIDSANRGPTLEVTLAKLRRLNPDLQVVALSATIGNADELADWLDAELVDSEWRPIDLREGVFY-----GGAIHFDD 219 (737)
T ss_pred CccccCCCcchHHHHHHHHHHHhcCCCCcEEEEcccCCCHHHHHHHhCCCcccCCCCCCCCeeeEec-----CCeecccc
Confidence 999999999999999999988877778999999999986 34444332111 11111000000 00000000
Q ss_pred CceEEEEEcCc-hhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCC-------------------
Q psy15524 624 SLKQHFIVTPP-KLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGE------------------- 683 (930)
Q Consensus 624 ~~~~~~~~~~~-~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~------------------- 683 (930)
.+.....+. ......+...+. .++++||||+|+..++.++..|......
T Consensus 220 --~~~~~~~~~~~~~~~~~~~~~~---------~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~ 288 (737)
T PRK02362 220 --SQREVEVPSKDDTLNLVLDTLE---------EGGQCLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIRE 288 (737)
T ss_pred --ccccCCCccchHHHHHHHHHHH---------cCCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHh
Confidence 011111111 111222222221 2679999999999998888777543210
Q ss_pred --------------CceEEEecCCCCHHHHHHHHHHhhcCCCcEEEeccccccccCCCCccEEEE----ec-----CCCC
Q psy15524 684 --------------NIAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQ----YT-----APSS 740 (930)
Q Consensus 684 --------------~~~~~~lhg~~~~~~R~~v~~~F~~~~~~vLv~T~~~~~GlDip~v~~VI~----~~-----~p~s 740 (930)
...+..+||+|++.+|..+++.|++|.++|||||+++++|+|+|++++||+ || .|.+
T Consensus 289 ~~~~~~~~~L~~~l~~gva~hHagl~~~eR~~ve~~Fr~G~i~VLvaT~tla~GvnlPa~~VVI~~~~~yd~~~g~~~~s 368 (737)
T PRK02362 289 VSDTETSKDLADCVAKGAAFHHAGLSREHRELVEDAFRDRLIKVISSTPTLAAGLNLPARRVIIRDYRRYDGGAGMQPIP 368 (737)
T ss_pred ccCccccHHHHHHHHhCEEeecCCCCHHHHHHHHHHHHcCCCeEEEechhhhhhcCCCceEEEEecceeecCCCCceeCC
Confidence 124666799999999999999999999999999999999999999999997 66 6889
Q ss_pred hhhHHhhhcccccCCCC--ceEEEEeCccc-H-HHHHHHH-hcCCccchhch--HHHHHhhhhhhccCccc
Q psy15524 741 STDYVHRVGRTARVGHE--GSSLLFLIPSE-V-KLVEELQ-NRRIRIEEIKL--KDCLQNLLSVKMEGDLS 804 (930)
Q Consensus 741 ~~~y~qr~GRagR~g~~--g~~~~~~~~~e-~-~~~~~l~-~~~~~~~~~~~--~~~~~~l~~~~~~~~~~ 804 (930)
..+|+||+|||||.|.+ |.+++++.+.+ . ++++... ....++++... ..+.+++++.+..+...
T Consensus 369 ~~~y~Qm~GRAGR~g~d~~G~~ii~~~~~~~~~~~~~~~l~~~~~~i~S~l~~~~~l~~~lla~I~~~~~~ 439 (737)
T PRK02362 369 VLEYHQMAGRAGRPGLDPYGEAVLLAKSYDELDELFERYIWADPEDVRSKLATEPALRTHVLSTIASGFAR 439 (737)
T ss_pred HHHHHHHhhcCCCCCCCCCceEEEEecCchhHHHHHHHHHhCCCCceeecCCChhhHHHHHHHHHHhCccC
Confidence 99999999999999986 88999887653 2 3444443 44555554432 24566677766665543
|
|
| >PRK11057 ATP-dependent DNA helicase RecQ; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-44 Score=423.77 Aligned_cols=340 Identities=20% Similarity=0.315 Sum_probs=260.5
Q ss_pred CCCHHHHHHHHhcCCCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCH
Q psy15524 397 GIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTR 476 (930)
Q Consensus 397 ~l~~~~~~~l~~~~~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~Ptr 476 (930)
.+++...+.|.+.|||..++|+|.++|+.++.|+|+++.||||+|||+||++|++.. +..+|||+|++
T Consensus 8 ~~~~~~~~~l~~~fG~~~~r~~Q~~ai~~il~g~dvlv~apTGsGKTl~y~lpal~~------------~g~tlVisPl~ 75 (607)
T PRK11057 8 NLESLAKQVLQETFGYQQFRPGQQEIIDAVLSGRDCLVVMPTGGGKSLCYQIPALVL------------DGLTLVVSPLI 75 (607)
T ss_pred CchhHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHc------------CCCEEEEecHH
Confidence 455556677777899999999999999999999999999999999999999999842 23589999999
Q ss_pred HHHHHHHHHHHHhhccCCCcceEEEeCCCchHHHHH---HHh-cCCcEEEECchhHHHhhhccCCcccccceEEEEecch
Q psy15524 477 ELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKA---RIR-KGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEAD 552 (930)
Q Consensus 477 eLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~---~~~-~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah 552 (930)
+|+.|+.+.+...+ +....+.++........ .+. ...+++++||+++...... ..+...+++++|+||||
T Consensus 76 sL~~dqv~~l~~~g-----i~~~~~~s~~~~~~~~~~~~~~~~g~~~il~~tPe~l~~~~~~-~~l~~~~l~~iVIDEaH 149 (607)
T PRK11057 76 SLMKDQVDQLLANG-----VAAACLNSTQTREQQLEVMAGCRTGQIKLLYIAPERLMMDNFL-EHLAHWNPALLAVDEAH 149 (607)
T ss_pred HHHHHHHHHHHHcC-----CcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEEChHHhcChHHH-HHHhhCCCCEEEEeCcc
Confidence 99999999888753 23444555544333222 222 3478999999998632111 12334578999999999
Q ss_pred hhhhcC--cHHHHHHHHHHHhhcCccceEEEEccccCHHHHHHH-hh-hcCCCEEEEccCCCCcccCccceecCCCceEE
Q psy15524 553 RILDQG--YERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLA-GM-TLQNPIQIDAADSTDIHNTTDSLVIPDSLKQH 628 (930)
Q Consensus 553 ~l~~~g--~~~~l~~i~~~l~~~~~~~q~vl~SAT~~~~~~~l~-~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 628 (930)
++.+|| |...+..+- .+....+..+++++|||+++.+.... .. .+.+|...... .. . ..+ .
T Consensus 150 ~i~~~G~~fr~~y~~L~-~l~~~~p~~~~v~lTAT~~~~~~~di~~~l~l~~~~~~~~~-~~----------r-~nl--~ 214 (607)
T PRK11057 150 CISQWGHDFRPEYAALG-QLRQRFPTLPFMALTATADDTTRQDIVRLLGLNDPLIQISS-FD----------R-PNI--R 214 (607)
T ss_pred ccccccCcccHHHHHHH-HHHHhCCCCcEEEEecCCChhHHHHHHHHhCCCCeEEEECC-CC----------C-Ccc--e
Confidence 999988 556555443 33333457899999999998765432 22 23455433211 10 0 111 2
Q ss_pred EEEcCchhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHHHHHHHHHHhhc
Q psy15524 629 FIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRS 708 (930)
Q Consensus 629 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~v~~~F~~ 708 (930)
|...........+..++... .+.++||||+|++.++.+++.|... ++.+..+||+|++++|..+++.|++
T Consensus 215 ~~v~~~~~~~~~l~~~l~~~-------~~~~~IIFc~tr~~~e~la~~L~~~---g~~v~~~Ha~l~~~~R~~i~~~F~~ 284 (607)
T PRK11057 215 YTLVEKFKPLDQLMRYVQEQ-------RGKSGIIYCNSRAKVEDTAARLQSR---GISAAAYHAGLDNDVRADVQEAFQR 284 (607)
T ss_pred eeeeeccchHHHHHHHHHhc-------CCCCEEEEECcHHHHHHHHHHHHhC---CCCEEEecCCCCHHHHHHHHHHHHC
Confidence 33333334444555555431 2678999999999999999999875 7888999999999999999999999
Q ss_pred CCCcEEEeccccccccCCCCccEEEEecCCCChhhHHhhhcccccCCCCceEEEEeCcccHHHHHHHHhcC
Q psy15524 709 VKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPSEVKLVEELQNRR 779 (930)
Q Consensus 709 ~~~~vLv~T~~~~~GlDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~e~~~~~~l~~~~ 779 (930)
|+.+|||||+++++|+|+|+|++||+||+|.+.++|+||+|||||.|.+|.|++|+.+.+..+++++....
T Consensus 285 g~~~VLVaT~a~~~GIDip~V~~VI~~d~P~s~~~y~Qr~GRaGR~G~~~~~ill~~~~d~~~~~~~~~~~ 355 (607)
T PRK11057 285 DDLQIVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCLEEK 355 (607)
T ss_pred CCCCEEEEechhhccCCCCCcCEEEEeCCCCCHHHHHHHhhhccCCCCCceEEEEeCHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999998888776543
|
|
| >PRK13767 ATP-dependent helicase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-44 Score=430.88 Aligned_cols=359 Identities=22% Similarity=0.276 Sum_probs=260.5
Q ss_pred CCCHHHHHHHHhcCCCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCH
Q psy15524 397 GIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTR 476 (930)
Q Consensus 397 ~l~~~~~~~l~~~~~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~Ptr 476 (930)
.++|.+.+.+.+ +|..|||+|+++||.+++|+|++++||||||||++|.+|+++.+...........+.++|||+|||
T Consensus 17 ~l~~~v~~~~~~--~~~~~tpiQ~~Ai~~il~g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~~~~~~~~LyIsPtr 94 (876)
T PRK13767 17 LLRPYVREWFKE--KFGTFTPPQRYAIPLIHEGKNVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCLYVSPLR 94 (876)
T ss_pred hcCHHHHHHHHH--ccCCCCHHHHHHHHHHHcCCCEEEECCCCCcHHHHHHHHHHHHHHhhccccCCCCCeEEEEEcCHH
Confidence 578888888875 788999999999999999999999999999999999999999887532211123578899999999
Q ss_pred HHHHHHHHHHHHh-------h----ccCCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhccCC-cccccce
Q psy15524 477 ELALQTLEIFTKL-------C----KSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTET-LKFSKVE 544 (930)
Q Consensus 477 eLa~Q~~~~~~~~-------~----~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~-~~~~~l~ 544 (930)
+|+.|+++.+... . ...+.+.+...+|+.........+.+.++|+|+||++|..++.+... ..+++++
T Consensus 95 aLa~di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~~~p~IlVtTPE~L~~ll~~~~~~~~l~~l~ 174 (876)
T PRK13767 95 ALNNDIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKMLKKPPHILITTPESLAILLNSPKFREKLRTVK 174 (876)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHhCCCCEEEecHHHHHHHhcChhHHHHHhcCC
Confidence 9999998866532 2 22224556777888776666666677899999999999887765321 1478999
Q ss_pred EEEEecchhhhhcCcHHHHHHHHHHHhhcC-ccceEEEEccccCH--HHHHHHhhhc----CCCEEEEccCCCCcccCcc
Q psy15524 545 HLVLDEADRILDQGYERDIAEFLEILKKQK-PQFQSILLSATLTP--AVQRLAGMTL----QNPIQIDAADSTDIHNTTD 617 (930)
Q Consensus 545 ~lVlDEah~l~~~g~~~~l~~i~~~l~~~~-~~~q~vl~SAT~~~--~~~~l~~~~~----~~~~~i~~~~~~~~~~~~~ 617 (930)
+||+||+|.+.+..++..+...++.+.... +..|++++|||+++ .+..+..... ..+..+....... ....
T Consensus 175 ~VVIDE~H~l~~~~RG~~l~~~L~rL~~l~~~~~q~IglSATl~~~~~va~~L~~~~~~~~~r~~~iv~~~~~k--~~~i 252 (876)
T PRK13767 175 WVIVDEIHSLAENKRGVHLSLSLERLEELAGGEFVRIGLSATIEPLEEVAKFLVGYEDDGEPRDCEIVDARFVK--PFDI 252 (876)
T ss_pred EEEEechhhhccCccHHHHHHHHHHHHHhcCCCCeEEEEecccCCHHHHHHHhcCccccCCCCceEEEccCCCc--cceE
Confidence 999999999998888877777777776544 57899999999986 2333332211 1122211100000 0000
Q ss_pred ceecCCCceEEEEEcCchhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCC---CceEEEecCCC
Q psy15524 618 SLVIPDSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGE---NIAFFKLHGSM 694 (930)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~---~~~~~~lhg~~ 694 (930)
....| ... ............+...+...... ++++||||+|+..++.++..|...+.. +..+..+||+|
T Consensus 253 ~v~~p--~~~-l~~~~~~~~~~~l~~~L~~~i~~-----~~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~hHg~l 324 (876)
T PRK13767 253 KVISP--VDD-LIHTPAEEISEALYETLHELIKE-----HRTTLIFTNTRSGAERVLYNLRKRFPEEYDEDNIGAHHSSL 324 (876)
T ss_pred EEecc--Ccc-ccccccchhHHHHHHHHHHHHhc-----CCCEEEEeCCHHHHHHHHHHHHHhchhhccccceeeeeCCC
Confidence 00000 000 00111111222233333332221 568999999999999999998875431 35677889999
Q ss_pred CHHHHHHHHHHhhcCCCcEEEeccccccccCCCCccEEEEecCCCChhhHHhhhcccccCC-CCceEEEEeCcc
Q psy15524 695 SQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVG-HEGSSLLFLIPS 767 (930)
Q Consensus 695 ~~~~R~~v~~~F~~~~~~vLv~T~~~~~GlDip~v~~VI~~~~p~s~~~y~qr~GRagR~g-~~g~~~~~~~~~ 767 (930)
++++|..++++|++|+.+|||||+++++|||+|++++||+++.|.+..+|+||+|||||.+ ..+.+.++....
T Consensus 325 s~~~R~~ve~~fk~G~i~vLVaTs~Le~GIDip~Vd~VI~~~~P~sv~~ylQRiGRaGR~~g~~~~g~ii~~~~ 398 (876)
T PRK13767 325 SREVRLEVEEKLKRGELKVVVSSTSLELGIDIGYIDLVVLLGSPKSVSRLLQRIGRAGHRLGEVSKGRIIVVDR 398 (876)
T ss_pred CHHHHHHHHHHHHcCCCeEEEECChHHhcCCCCCCcEEEEeCCCCCHHHHHHhcccCCCCCCCCCcEEEEEcCc
Confidence 9999999999999999999999999999999999999999999999999999999999874 445666666543
|
|
| >TIGR01389 recQ ATP-dependent DNA helicase RecQ | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-43 Score=417.56 Aligned_cols=334 Identities=20% Similarity=0.312 Sum_probs=260.3
Q ss_pred HHHHhcCCCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHH
Q psy15524 404 KNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTL 483 (930)
Q Consensus 404 ~~l~~~~~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~ 483 (930)
+.|.+.|||.+++|+|.++|+.++.|+|++++||||+|||+||++|++.. +..++||+|+++|+.|+.
T Consensus 3 ~~l~~~fg~~~fr~~Q~~~i~~il~g~dvlv~~PTG~GKTl~y~lpal~~------------~g~~lVisPl~sL~~dq~ 70 (591)
T TIGR01389 3 QVLKRTFGYDDFRPGQEEIISHVLDGRDVLVVMPTGGGKSLCYQVPALLL------------KGLTVVISPLISLMKDQV 70 (591)
T ss_pred HHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHhHHHHHHHHHc------------CCcEEEEcCCHHHHHHHH
Confidence 45677799999999999999999999999999999999999999999831 335899999999999999
Q ss_pred HHHHHhhccCCCcceEEEeCCCchHHHHH---HH-hcCCcEEEECchhHHHhhhccCCcccccceEEEEecchhhhhcC-
Q psy15524 484 EIFTKLCKSFTWIVPSWLTGGEKMKSEKA---RI-RKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQG- 558 (930)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~~gg~~~~~~~~---~~-~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~l~~~g- 558 (930)
+.++.++ +.+..+.++........ .+ ....+|+++||+++...... ..+...++++||+||||++.+||
T Consensus 71 ~~l~~~g-----i~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~-~~l~~~~l~~iViDEaH~i~~~g~ 144 (591)
T TIGR01389 71 DQLRAAG-----VAAAYLNSTLSAKEQQDIEKALVNGELKLLYVAPERLEQDYFL-NMLQRIPIALVAVDEAHCVSQWGH 144 (591)
T ss_pred HHHHHcC-----CcEEEEeCCCCHHHHHHHHHHHhCCCCCEEEEChhHhcChHHH-HHHhcCCCCEEEEeCCcccccccC
Confidence 9988753 23455556554433222 12 34589999999998542221 12345689999999999999988
Q ss_pred -cHHHHHHHHHHHhhcCccceEEEEccccCHHHHHHHhhhcC--CCEEEEccCCCCcccCccceecCCCceEEEEEcCch
Q psy15524 559 -YERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQ--NPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPK 635 (930)
Q Consensus 559 -~~~~l~~i~~~l~~~~~~~q~vl~SAT~~~~~~~l~~~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 635 (930)
|...+..+....... +..+++++|||+++.+.......+. ++..+... . .. . ...+......
T Consensus 145 ~frp~y~~l~~l~~~~-~~~~vi~lTAT~~~~~~~~i~~~l~~~~~~~~~~~-~----------~r-~--nl~~~v~~~~ 209 (591)
T TIGR01389 145 DFRPEYQRLGSLAERF-PQVPRIALTATADAETRQDIRELLRLADANEFITS-F----------DR-P--NLRFSVVKKN 209 (591)
T ss_pred ccHHHHHHHHHHHHhC-CCCCEEEEEeCCCHHHHHHHHHHcCCCCCCeEecC-C----------CC-C--CcEEEEEeCC
Confidence 777776665554433 3556999999999887654444332 33222110 0 00 1 1233333444
Q ss_pred hhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHHHHHHHHHHhhcCCCcEEE
Q psy15524 636 LRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSVKSGVLI 715 (930)
Q Consensus 636 ~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~v~~~F~~~~~~vLv 715 (930)
.+...+..++.... +.++||||+|++.++.+++.|... ++.+..+||+|++++|..+++.|.+|+.+|||
T Consensus 210 ~~~~~l~~~l~~~~-------~~~~IIf~~sr~~~e~la~~L~~~---g~~~~~~H~~l~~~~R~~i~~~F~~g~~~vlV 279 (591)
T TIGR01389 210 NKQKFLLDYLKKHR-------GQSGIIYASSRKKVEELAERLESQ---GISALAYHAGLSNKVRAENQEDFLYDDVKVMV 279 (591)
T ss_pred CHHHHHHHHHHhcC-------CCCEEEEECcHHHHHHHHHHHHhC---CCCEEEEECCCCHHHHHHHHHHHHcCCCcEEE
Confidence 55666666665421 568999999999999999999864 78888999999999999999999999999999
Q ss_pred eccccccccCCCCccEEEEecCCCChhhHHhhhcccccCCCCceEEEEeCcccHHHHHHHHhcCC
Q psy15524 716 CTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPSEVKLVEELQNRRI 780 (930)
Q Consensus 716 ~T~~~~~GlDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~e~~~~~~l~~~~~ 780 (930)
||+++++|+|+|+|++||++++|.+.+.|+||+|||||.|.+|.|++++.+.+...++++.....
T Consensus 280 aT~a~~~GID~p~v~~VI~~~~p~s~~~y~Q~~GRaGR~G~~~~~il~~~~~d~~~~~~~i~~~~ 344 (591)
T TIGR01389 280 ATNAFGMGIDKPNVRFVIHYDMPGNLESYYQEAGRAGRDGLPAEAILLYSPADIALLKRRIEQSE 344 (591)
T ss_pred EechhhccCcCCCCCEEEEcCCCCCHHHHhhhhccccCCCCCceEEEecCHHHHHHHHHHHhccC
Confidence 99999999999999999999999999999999999999999999999999999988888776543
|
The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ. |
| >PRK00254 ski2-like helicase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-41 Score=409.22 Aligned_cols=351 Identities=21% Similarity=0.255 Sum_probs=256.6
Q ss_pred CCCCCCCCCHHHHHHHHhcCCCCCCCHHHHHhHHh-hhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeE
Q psy15524 391 SYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQP-ILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYA 469 (930)
Q Consensus 391 ~f~~l~~l~~~~~~~l~~~~~~~~~~~iQ~~~i~~-il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~ 469 (930)
+|+++ ++++.+.+.+.+ +||..|+|+|.++++. +++|+|++++||||||||++|.+|+++.+.. .+.++
T Consensus 2 ~~~~l-~l~~~~~~~l~~-~g~~~l~~~Q~~ai~~~~~~g~nvlv~apTGsGKT~~~~l~il~~l~~--------~~~~~ 71 (720)
T PRK00254 2 KVDEL-RVDERIKRVLKE-RGIEELYPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMVNKLLR--------EGGKA 71 (720)
T ss_pred cHHHc-CCCHHHHHHHHh-CCCCCCCHHHHHHHHHHHhCCCcEEEECCCCcHHHHHHHHHHHHHHHh--------cCCeE
Confidence 57788 899999999985 8999999999999986 7899999999999999999999999998764 25689
Q ss_pred EEEccCHHHHHHHHHHHHHhhccCCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhccCCcccccceEEEEe
Q psy15524 470 VIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLD 549 (930)
Q Consensus 470 lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlD 549 (930)
|||+|+++|+.|+++.+..+. ..+ ..+..++|+...... ....++|+|+||+++..++++ ....+++++++|+|
T Consensus 72 l~l~P~~aLa~q~~~~~~~~~-~~g-~~v~~~~Gd~~~~~~---~~~~~~IiV~Tpe~~~~ll~~-~~~~l~~l~lvViD 145 (720)
T PRK00254 72 VYLVPLKALAEEKYREFKDWE-KLG-LRVAMTTGDYDSTDE---WLGKYDIIIATAEKFDSLLRH-GSSWIKDVKLVVAD 145 (720)
T ss_pred EEEeChHHHHHHHHHHHHHHh-hcC-CEEEEEeCCCCCchh---hhccCCEEEEcHHHHHHHHhC-CchhhhcCCEEEEc
Confidence 999999999999999998753 233 456667787654322 235689999999999988875 33457899999999
Q ss_pred cchhhhhcCcHHHHHHHHHHHhhcCccceEEEEccccCHHHHHHHhhhcCCCEEEEccCCCCcccCccceecCCCceEEE
Q psy15524 550 EADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHF 629 (930)
Q Consensus 550 Eah~l~~~g~~~~l~~i~~~l~~~~~~~q~vl~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 629 (930)
|+|.+.+.+++..++.++..+.. ..|++++|||+++ ..+++.+. ....+...... ..... ....+.+
T Consensus 146 E~H~l~~~~rg~~le~il~~l~~---~~qiI~lSATl~n-~~~la~wl-~~~~~~~~~rp----v~l~~----~~~~~~~ 212 (720)
T PRK00254 146 EIHLIGSYDRGATLEMILTHMLG---RAQILGLSATVGN-AEELAEWL-NAELVVSDWRP----VKLRK----GVFYQGF 212 (720)
T ss_pred CcCccCCccchHHHHHHHHhcCc---CCcEEEEEccCCC-HHHHHHHh-CCccccCCCCC----Cccee----eEecCCe
Confidence 99999999999999988887753 6899999999986 34444432 22111100000 00000 0000111
Q ss_pred EEcCch--hh-HHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcC------------------------
Q psy15524 630 IVTPPK--LR-LVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLG------------------------ 682 (930)
Q Consensus 630 ~~~~~~--~~-~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~------------------------ 682 (930)
...... .+ ...+...+..... .++++||||+|+..++.++..+.....
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~i~-----~~~~vLVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (720)
T PRK00254 213 LFWEDGKIERFPNSWESLVYDAVK-----KGKGALVFVNTRRSAEKEALELAKKIKRFLTKPELRALKELADSLEENPTN 287 (720)
T ss_pred eeccCcchhcchHHHHHHHHHHHH-----hCCCEEEEEcChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCc
Confidence 111111 11 1112222222211 167999999999999877655532110
Q ss_pred ------CCceEEEecCCCCHHHHHHHHHHhhcCCCcEEEeccccccccCCCCccEEEE-------ecCC-CChhhHHhhh
Q psy15524 683 ------ENIAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQ-------YTAP-SSSTDYVHRV 748 (930)
Q Consensus 683 ------~~~~~~~lhg~~~~~~R~~v~~~F~~~~~~vLv~T~~~~~GlDip~v~~VI~-------~~~p-~s~~~y~qr~ 748 (930)
-...+..+||+|++++|..+++.|++|.++|||||+++++|+|+|++++||. ++.| .+..+|.||+
T Consensus 288 ~~L~~~l~~gv~~hHagl~~~eR~~ve~~F~~G~i~VLvaT~tLa~Gvnipa~~vVI~~~~~~~~~~~~~~~~~~~~Qm~ 367 (720)
T PRK00254 288 EKLKKALRGGVAFHHAGLGRTERVLIEDAFREGLIKVITATPTLSAGINLPAFRVIIRDTKRYSNFGWEDIPVLEIQQMM 367 (720)
T ss_pred HHHHHHHhhCEEEeCCCCCHHHHHHHHHHHHCCCCeEEEeCcHHhhhcCCCceEEEECCceEcCCCCceeCCHHHHHHhh
Confidence 0124667799999999999999999999999999999999999999999995 3433 3577999999
Q ss_pred cccccCC--CCceEEEEeCccc-HHHHHHH
Q psy15524 749 GRTARVG--HEGSSLLFLIPSE-VKLVEEL 775 (930)
Q Consensus 749 GRagR~g--~~g~~~~~~~~~e-~~~~~~l 775 (930)
|||||.| ..|.+++++.+.+ ..+++++
T Consensus 368 GRAGR~~~d~~G~~ii~~~~~~~~~~~~~~ 397 (720)
T PRK00254 368 GRAGRPKYDEVGEAIIVATTEEPSKLMERY 397 (720)
T ss_pred hccCCCCcCCCceEEEEecCcchHHHHHHH
Confidence 9999986 4699999988755 3455544
|
|
| >PRK01172 ski2-like helicase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-41 Score=401.78 Aligned_cols=356 Identities=20% Similarity=0.258 Sum_probs=261.2
Q ss_pred CCCCCCCCCHHHHHHHHhcCCCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEE
Q psy15524 391 SYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAV 470 (930)
Q Consensus 391 ~f~~l~~l~~~~~~~l~~~~~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~l 470 (930)
.|+++ ++++.+.+.+.+ .+|. ++++|.++++.+.+|+|++++||||||||+++.+++++.+.. +.++|
T Consensus 2 ~~~~~-~l~~~~~~~~~~-~~~~-l~~~Q~~ai~~l~~~~nvlv~apTGSGKTl~a~lail~~l~~---------~~k~v 69 (674)
T PRK01172 2 KISDL-GYDDEFLNLFTG-NDFE-LYDHQRMAIEQLRKGENVIVSVPTAAGKTLIAYSAIYETFLA---------GLKSI 69 (674)
T ss_pred cHhhc-CCCHHHHHHHhh-CCCC-CCHHHHHHHHHHhcCCcEEEECCCCchHHHHHHHHHHHHHHh---------CCcEE
Confidence 57888 899999999974 6886 999999999999999999999999999999999999988754 56799
Q ss_pred EEccCHHHHHHHHHHHHHhhccCCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhccCCcccccceEEEEec
Q psy15524 471 IILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDE 550 (930)
Q Consensus 471 il~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlDE 550 (930)
|++|+++||.|+++.|.++.. .+ ..+...+|+...... ..+.++|+|+|||++..++.++. ..+++++++|+||
T Consensus 70 ~i~P~raLa~q~~~~~~~l~~-~g-~~v~~~~G~~~~~~~---~~~~~dIiv~Tpek~~~l~~~~~-~~l~~v~lvViDE 143 (674)
T PRK01172 70 YIVPLRSLAMEKYEELSRLRS-LG-MRVKISIGDYDDPPD---FIKRYDVVILTSEKADSLIHHDP-YIINDVGLIVADE 143 (674)
T ss_pred EEechHHHHHHHHHHHHHHhh-cC-CeEEEEeCCCCCChh---hhccCCEEEECHHHHHHHHhCCh-hHHhhcCEEEEec
Confidence 999999999999999987642 33 345566676543322 23568999999999998887643 4578999999999
Q ss_pred chhhhhcCcHHHHHHHHHHHhhcCccceEEEEccccCHHHHHHHhhhcCCCEEEEccCCCCcccCccceecCCCceEEE-
Q psy15524 551 ADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHF- 629 (930)
Q Consensus 551 ah~l~~~g~~~~l~~i~~~l~~~~~~~q~vl~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~- 629 (930)
||++.+.+++..++.++..++...++.|++++|||+++ ..+++.+. ..+.+ .... .|..+....
T Consensus 144 aH~l~d~~rg~~le~ll~~~~~~~~~~riI~lSATl~n-~~~la~wl-~~~~~-~~~~------------r~vpl~~~i~ 208 (674)
T PRK01172 144 IHIIGDEDRGPTLETVLSSARYVNPDARILALSATVSN-ANELAQWL-NASLI-KSNF------------RPVPLKLGIL 208 (674)
T ss_pred chhccCCCccHHHHHHHHHHHhcCcCCcEEEEeCccCC-HHHHHHHh-CCCcc-CCCC------------CCCCeEEEEE
Confidence 99999988999999988888776678999999999976 34444432 21110 0000 000111000
Q ss_pred ----EEcCchhh-HHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCC---------------------
Q psy15524 630 ----IVTPPKLR-LVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGE--------------------- 683 (930)
Q Consensus 630 ----~~~~~~~~-~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~--------------------- 683 (930)
.......+ ...+...+..... .++++||||++++.++.++..|.+....
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~i~~~~~-----~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~ 283 (674)
T PRK01172 209 YRKRLILDGYERSQVDINSLIKETVN-----DGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEM 283 (674)
T ss_pred ecCeeeecccccccccHHHHHHHHHh-----CCCcEEEEeccHHHHHHHHHHHHHhhhhcccccccccccccccHHHHHH
Confidence 00111111 1112223332211 2679999999999999988887654221
Q ss_pred -CceEEEecCCCCHHHHHHHHHHhhcCCCcEEEeccccccccCCCCccEEEEe--------cCCCChhhHHhhhcccccC
Q psy15524 684 -NIAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQY--------TAPSSSTDYVHRVGRTARV 754 (930)
Q Consensus 684 -~~~~~~lhg~~~~~~R~~v~~~F~~~~~~vLv~T~~~~~GlDip~v~~VI~~--------~~p~s~~~y~qr~GRagR~ 754 (930)
..++..+||+|++++|..+++.|++|.++|||||+++++|+|+|+..+||.. ..|.+..+|.||+|||||.
T Consensus 284 l~~gv~~~hagl~~~eR~~ve~~f~~g~i~VLvaT~~la~Gvnipa~~VII~~~~~~~~~~~~~~s~~~~~Qm~GRAGR~ 363 (674)
T PRK01172 284 LPHGVAFHHAGLSNEQRRFIEEMFRNRYIKVIVATPTLAAGVNLPARLVIVRDITRYGNGGIRYLSNMEIKQMIGRAGRP 363 (674)
T ss_pred HhcCEEEecCCCCHHHHHHHHHHHHcCCCeEEEecchhhccCCCcceEEEEcCceEeCCCCceeCCHHHHHHHhhcCCCC
Confidence 1235667999999999999999999999999999999999999998766631 1356889999999999999
Q ss_pred CC--CceEEEEeCccc-HHHHHHHH-hcCCccch
Q psy15524 755 GH--EGSSLLFLIPSE-VKLVEELQ-NRRIRIEE 784 (930)
Q Consensus 755 g~--~g~~~~~~~~~e-~~~~~~l~-~~~~~~~~ 784 (930)
|. .|.+++++...+ ..+++++. ....|+++
T Consensus 364 g~d~~g~~~i~~~~~~~~~~~~~~l~~~~~pi~S 397 (674)
T PRK01172 364 GYDQYGIGYIYAASPASYDAAKKYLSGEPEPVIS 397 (674)
T ss_pred CCCCcceEEEEecCcccHHHHHHHHcCCCCceee
Confidence 96 577888876544 45555543 45555544
|
|
| >TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-41 Score=390.73 Aligned_cols=324 Identities=17% Similarity=0.151 Sum_probs=244.4
Q ss_pred HHhcCCCCCCCHHHHHhHHhhhcCC-cEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEE-EEccCHHHHHHHH
Q psy15524 406 LNEGMNITQVTTVQQLSIQPILDGG-DVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAV-IILPTRELALQTL 483 (930)
Q Consensus 406 l~~~~~~~~~~~iQ~~~i~~il~~~-d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~l-il~PtreLa~Q~~ 483 (930)
+.+..||+ |||||.++||.++.|+ ++++++|||||||.+|.++++... . ....++.| +++|||||+.|++
T Consensus 8 f~~~~G~~-PtpiQ~~~i~~il~G~~~v~~~apTGSGKTaa~aafll~~~-~------~~~~~~rLv~~vPtReLa~Qi~ 79 (844)
T TIGR02621 8 YQGLHGYS-PFPWQLSLAERFVAGQPPESCSTPTGLGKTSIIAAWLLAVE-I------GAKVPRRLVYVVNRRTVVDQVT 79 (844)
T ss_pred HHHHhCCC-CCHHHHHHHHHHHcCCCcceEecCCCCcccHHHHHhhcccc-c------cccccceEEEeCchHHHHHHHH
Confidence 44446898 9999999999999998 588889999999997765555321 1 12234445 5779999999999
Q ss_pred HHHHHhhccCC----------------------CcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhccCCc---
Q psy15524 484 EIFTKLCKSFT----------------------WIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETL--- 538 (930)
Q Consensus 484 ~~~~~~~~~~~----------------------~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~--- 538 (930)
+.+.++.+.+. .+.+..++||.....+...+..+++|||+|+ +++.+ +.+
T Consensus 80 ~~~~~~~k~l~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l~~~p~IIVgT~----D~i~s-r~L~~g 154 (844)
T TIGR02621 80 EEAEKIGERLPDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWMLDPHRPAVIVGTV----DMIGS-RLLFSG 154 (844)
T ss_pred HHHHHHHHHhcccchhhhhhhhhhccccccccCCeEEEEEECCCChHHHHHhcCCCCcEEEECH----HHHcC-Cccccc
Confidence 99999887542 2567888999999999999999999999995 44443 222
Q ss_pred -------------ccccceEEEEecchhhhhcCcHHHHHHHHHHHh--hcCccceEEEEccccCHHHHHHHhhhcCCCEE
Q psy15524 539 -------------KFSKVEHLVLDEADRILDQGYERDIAEFLEILK--KQKPQFQSILLSATLTPAVQRLAGMTLQNPIQ 603 (930)
Q Consensus 539 -------------~~~~l~~lVlDEah~l~~~g~~~~l~~i~~~l~--~~~~~~q~vl~SAT~~~~~~~l~~~~~~~~~~ 603 (930)
.+++++++|||||| ++++|...+..|++.+. ....++|+++||||++..+..+....+.++..
T Consensus 155 Yg~~~~~~pi~ag~L~~v~~LVLDEAD--Ld~gF~~~l~~Il~~l~rp~~~rprQtLLFSAT~p~ei~~l~~~~~~~p~~ 232 (844)
T TIGR02621 155 YGCGFKSRPLHAGFLGQDALIVHDEAH--LEPAFQELLKQIMNEQQRPPDFLPLRVVELTATSRTDGPDRTTLLSAEDYK 232 (844)
T ss_pred cccccccccchhhhhccceEEEEehhh--hccccHHHHHHHHHhcccCcccccceEEEEecCCCccHHHHHHHHccCCce
Confidence 26889999999999 68999999999998752 21123799999999999888888777777766
Q ss_pred EEccCCCCcccCccceecCCCceEEEEEcCchhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCC
Q psy15524 604 IDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGE 683 (930)
Q Consensus 604 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~ 683 (930)
+.+.... .....+.+ ++.++...+...+...+..... ..++++||||+|++.++.+++.|.+.
T Consensus 233 i~V~~~~---------l~a~ki~q-~v~v~~e~Kl~~lv~~L~~ll~----e~g~~vLVF~NTv~~Aq~L~~~L~~~--- 295 (844)
T TIGR02621 233 HPVLKKR---------LAAKKIVK-LVPPSDEKFLSTMVKELNLLMK----DSGGAILVFCRTVKHVRKVFAKLPKE--- 295 (844)
T ss_pred eeccccc---------ccccceEE-EEecChHHHHHHHHHHHHHHHh----hCCCcEEEEECCHHHHHHHHHHHHhc---
Confidence 5543221 11122333 3344444454444443332221 12578999999999999999999864
Q ss_pred CceEEEecCCCCHHHHH-----HHHHHhhc----CC-------CcEEEeccccccccCCCCccEEEEecCCCChhhHHhh
Q psy15524 684 NIAFFKLHGSMSQSERT-----EVFKTFRS----VK-------SGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHR 747 (930)
Q Consensus 684 ~~~~~~lhg~~~~~~R~-----~v~~~F~~----~~-------~~vLv~T~~~~~GlDip~v~~VI~~~~p~s~~~y~qr 747 (930)
++ ..+||+|++.+|. .+++.|++ |. ..|||||+++++||||+. ++||++..| .+.|+||
T Consensus 296 g~--~lLHG~m~q~dR~~~~~~~il~~Fk~~~~~g~~~~~~~g~~ILVATdVaerGLDId~-d~VI~d~aP--~esyIQR 370 (844)
T TIGR02621 296 KF--ELLTGTLRGAERDDLVKKEIFNRFLPQMLSGSRARPQQGTVYLVCTSAGEVGVNISA-DHLVCDLAP--FESMQQR 370 (844)
T ss_pred CC--eEeeCCCCHHHHhhHHHHHHHHHHhccccccccccccccceEEeccchhhhcccCCc-ceEEECCCC--HHHHHHH
Confidence 44 7789999999999 88999987 43 679999999999999987 888887766 6899999
Q ss_pred hcccccCCCCceE-EEEeCc
Q psy15524 748 VGRTARVGHEGSS-LLFLIP 766 (930)
Q Consensus 748 ~GRagR~g~~g~~-~~~~~~ 766 (930)
+||+||.|+.|.+ +.++.+
T Consensus 371 iGRtgR~G~~~~~~i~vv~~ 390 (844)
T TIGR02621 371 FGRVNRFGELQACQIAVVHL 390 (844)
T ss_pred hcccCCCCCCCCceEEEEee
Confidence 9999999986444 555533
|
This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs. |
| >TIGR00580 mfd transcription-repair coupling factor (mfd) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-40 Score=397.08 Aligned_cols=324 Identities=20% Similarity=0.260 Sum_probs=248.6
Q ss_pred CCHHHHHHHHhcCCCCCCCHHHHHhHHhhhcC------CcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEE
Q psy15524 398 IHPFMKKNLNEGMNITQVTTVQQLSIQPILDG------GDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVI 471 (930)
Q Consensus 398 l~~~~~~~l~~~~~~~~~~~iQ~~~i~~il~~------~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~li 471 (930)
.+......+.+.++|. +||+|.+||+.++++ .|.+++||||||||.+|++|++..+.. |.+++|
T Consensus 436 ~~~~~~~~~~~~~~f~-~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~~---------g~qvlv 505 (926)
T TIGR00580 436 PDLEWQQEFEDSFPFE-ETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVLD---------GKQVAV 505 (926)
T ss_pred CCHHHHHHHHHhCCCC-CCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHHh---------CCeEEE
Confidence 3456667777778995 999999999999985 799999999999999999999988754 678999
Q ss_pred EccCHHHHHHHHHHHHHhhccCCCcceEEEeCCCchHHH---HHHHhc-CCcEEEECchhHHHhhhccCCcccccceEEE
Q psy15524 472 ILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSE---KARIRK-GISILVATPGRLLDHCKHTETLKFSKVEHLV 547 (930)
Q Consensus 472 l~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~---~~~~~~-~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lV 547 (930)
++||++||.|+++.+++++..++ +.+..++|+...... ...+.. .++|+|+||. ++ . ..+.+++++++|
T Consensus 506 LvPT~~LA~Q~~~~f~~~~~~~~-i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~-ll---~--~~v~f~~L~llV 578 (926)
T TIGR00580 506 LVPTTLLAQQHFETFKERFANFP-VTIELLSRFRSAKEQNEILKELASGKIDILIGTHK-LL---Q--KDVKFKDLGLLI 578 (926)
T ss_pred EeCcHHHHHHHHHHHHHHhccCC-cEEEEEeccccHHHHHHHHHHHHcCCceEEEchHH-Hh---h--CCCCcccCCEEE
Confidence 99999999999999999887665 345566676543332 233444 4899999994 22 2 345688999999
Q ss_pred EecchhhhhcCcHHHHHHHHHHHhhcCccceEEEEccccCHHHHHHHhhhcCCCEEEEccCCCCcccCccceecCCCceE
Q psy15524 548 LDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQ 627 (930)
Q Consensus 548 lDEah~l~~~g~~~~l~~i~~~l~~~~~~~q~vl~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 627 (930)
+||+|++.. .....+ .....+.|+++||||+.+....+......++..+....... ..+..
T Consensus 579 IDEahrfgv-----~~~~~L---~~~~~~~~vL~~SATpiprtl~~~l~g~~d~s~I~~~p~~R-----------~~V~t 639 (926)
T TIGR00580 579 IDEEQRFGV-----KQKEKL---KELRTSVDVLTLSATPIPRTLHMSMSGIRDLSIIATPPEDR-----------LPVRT 639 (926)
T ss_pred eecccccch-----hHHHHH---HhcCCCCCEEEEecCCCHHHHHHHHhcCCCcEEEecCCCCc-----------cceEE
Confidence 999998532 122223 33345789999999998876666666666776665433210 11233
Q ss_pred EEEEcCchhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHHHHHHHHHHhh
Q psy15524 628 HFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFR 707 (930)
Q Consensus 628 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~v~~~F~ 707 (930)
.+...... .+...+..... .+++++|||++++.++.+++.|.+.++ +..+..+||+|++.+|..++++|+
T Consensus 640 ~v~~~~~~----~i~~~i~~el~-----~g~qv~if~n~i~~~e~l~~~L~~~~p-~~~v~~lHG~m~~~eRe~im~~F~ 709 (926)
T TIGR00580 640 FVMEYDPE----LVREAIRRELL-----RGGQVFYVHNRIESIEKLATQLRELVP-EARIAIAHGQMTENELEEVMLEFY 709 (926)
T ss_pred EEEecCHH----HHHHHHHHHHH-----cCCeEEEEECCcHHHHHHHHHHHHhCC-CCeEEEecCCCCHHHHHHHHHHHH
Confidence 33222211 11122221111 167999999999999999999988654 678889999999999999999999
Q ss_pred cCCCcEEEeccccccccCCCCccEEEEecCCC-ChhhHHhhhcccccCCCCceEEEEeCcc
Q psy15524 708 SVKSGVLICTDVAARGLDLPLVDWIVQYTAPS-SSTDYVHRVGRTARVGHEGSSLLFLIPS 767 (930)
Q Consensus 708 ~~~~~vLv~T~~~~~GlDip~v~~VI~~~~p~-s~~~y~qr~GRagR~g~~g~~~~~~~~~ 767 (930)
+|+.+|||||+++++|+|+|++++||++++|. +..+|.||+||+||.|+.|.|++++.+.
T Consensus 710 ~Gk~~ILVaT~iie~GIDIp~v~~VIi~~a~~~gls~l~Qr~GRvGR~g~~g~aill~~~~ 770 (926)
T TIGR00580 710 KGEFQVLVCTTIIETGIDIPNANTIIIERADKFGLAQLYQLRGRVGRSKKKAYAYLLYPHQ 770 (926)
T ss_pred cCCCCEEEECChhhcccccccCCEEEEecCCCCCHHHHHHHhcCCCCCCCCeEEEEEECCc
Confidence 99999999999999999999999999999875 6789999999999999999999998653
|
All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families. |
| >KOG0329|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-42 Score=328.03 Aligned_cols=325 Identities=25% Similarity=0.469 Sum_probs=276.2
Q ss_pred CCCCCCCCCCCHHHHHHHHhcCCCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCee
Q psy15524 389 PTSYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIY 468 (930)
Q Consensus 389 ~~~f~~l~~l~~~~~~~l~~~~~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~ 468 (930)
+..|.+| -|.|++++++-. .||+.|+.+|..+||...-|-|++++|..|.|||.+|.+..++.+.. ..+...
T Consensus 41 ssgfrdf-llkpellraivd-cgfehpsevqhecipqailgmdvlcqaksgmgktavfvl~tlqqiep------v~g~vs 112 (387)
T KOG0329|consen 41 SSGFRDF-LLKPELLRAIVD-CGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEP------VDGQVS 112 (387)
T ss_pred ccchhhh-hcCHHHHHHHHh-ccCCCchHhhhhhhhHHhhcchhheecccCCCceeeeehhhhhhcCC------CCCeEE
Confidence 3578898 899999999985 79999999999999999999999999999999999999999987753 234577
Q ss_pred EEEEccCHHHHHHHHHHHHHhhccCCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhccCCcccccceEEEE
Q psy15524 469 AVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVL 548 (930)
Q Consensus 469 ~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVl 548 (930)
++++|.|||||-|+..+...+.+..+...+..+.||...+.....+.+.++|+|+||||++.+.++ +.++++++..+|+
T Consensus 113 vlvmchtrelafqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee~lk~~PhivVgTPGrilALvr~-k~l~lk~vkhFvl 191 (387)
T KOG0329|consen 113 VLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLFIKKDEELLKNCPHIVVGTPGRILALVRN-RSLNLKNVKHFVL 191 (387)
T ss_pred EEEEeccHHHHHHHHHHHHHHHhhCCCceEEEEEcceeccccHHHHhCCCeEEEcCcHHHHHHHHh-ccCchhhcceeeh
Confidence 999999999999999999999999999999999999999888888888899999999999999887 7889999999999
Q ss_pred ecchhhhhc-CcHHHHHHHHHHHhhcCccceEEEEccccCHHHHHHHhhhcCCCEEEEccCCCCcccCccceecCCCceE
Q psy15524 549 DEADRILDQ-GYERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQ 627 (930)
Q Consensus 549 DEah~l~~~-g~~~~l~~i~~~l~~~~~~~q~vl~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 627 (930)
||+|.+++. ...++++.|.+..+ .+.|++.||||+++++....+.++++|..|-+.++.. .....+.|
T Consensus 192 DEcdkmle~lDMrRDvQEifr~tp---~~KQvmmfsatlskeiRpvC~kFmQdPmEi~vDdE~K--------LtLHGLqQ 260 (387)
T KOG0329|consen 192 DECDKMLEQLDMRRDVQEIFRMTP---HEKQVMMFSATLSKEIRPVCHKFMQDPMEIFVDDEAK--------LTLHGLQQ 260 (387)
T ss_pred hhHHHHHHHHHHHHHHHHHhhcCc---ccceeeeeeeecchhhHHHHHhhhcCchhhhccchhh--------hhhhhHHH
Confidence 999998864 35667777766554 4789999999999999999999999998887765532 23356888
Q ss_pred EEEEcCchhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHHHHHHHHHHhh
Q psy15524 628 HFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFR 707 (930)
Q Consensus 628 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~v~~~F~ 707 (930)
+|+......|...+..+|...- -.+++||+.+... ++ |
T Consensus 261 ~YvkLke~eKNrkl~dLLd~Le-------FNQVvIFvKsv~R------------------------l~----------f- 298 (387)
T KOG0329|consen 261 YYVKLKENEKNRKLNDLLDVLE-------FNQVVIFVKSVQR------------------------LS----------F- 298 (387)
T ss_pred HHHhhhhhhhhhhhhhhhhhhh-------hcceeEeeehhhh------------------------hh----------h-
Confidence 8888887777777777665431 4588999887643 00 3
Q ss_pred cCCCcEEEeccccccccCCCCccEEEEecCCCChhhHHhhhcccccCCCCceEEEEeCcccH-HHHHHHHhc
Q psy15524 708 SVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPSEV-KLVEELQNR 778 (930)
Q Consensus 708 ~~~~~vLv~T~~~~~GlDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~e~-~~~~~l~~~ 778 (930)
..+ +|||++++||+|+-.|+.|++||+|.+.++|+||+|||||.|..|.++.|++..+. ..+..++.+
T Consensus 299 --~kr-~vat~lfgrgmdiervNi~~NYdmp~~~DtYlHrv~rAgrfGtkglaitfvs~e~da~iLn~vqdR 367 (387)
T KOG0329|consen 299 --QKR-LVATDLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNPVQDR 367 (387)
T ss_pred --hhh-hHHhhhhccccCcccceeeeccCCCCCchHHHHHhhhhhccccccceeehhcchhhHHHhchhhHh
Confidence 223 89999999999999999999999999999999999999999999999999987554 466666553
|
|
| >COG1201 Lhr Lhr-like helicases [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=375.14 Aligned_cols=350 Identities=22% Similarity=0.284 Sum_probs=272.6
Q ss_pred CCCHHHHHHHHhcCCCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCH
Q psy15524 397 GIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTR 476 (930)
Q Consensus 397 ~l~~~~~~~l~~~~~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~Ptr 476 (930)
-|+|.+.+.+.+. |.+|||.|.+|||.+.+|+|+++.||||||||+++.+|++..+.+.. +....+|..+|||+|.|
T Consensus 7 ~l~~~v~~~~~~~--~~~~t~~Q~~a~~~i~~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~-~~~~~~~i~~lYIsPLk 83 (814)
T COG1201 7 ILDPRVREWFKRK--FTSLTPPQRYAIPEIHSGENVLIIAPTGSGKTEAAFLPVINELLSLG-KGKLEDGIYALYISPLK 83 (814)
T ss_pred hcCHHHHHHHHHh--cCCCCHHHHHHHHHHhCCCceEEEcCCCCChHHHHHHHHHHHHHhcc-CCCCCCceEEEEeCcHH
Confidence 5799999999863 99999999999999999999999999999999999999999998753 22235689999999999
Q ss_pred HHHHHHHHHHHHhhccCCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhccC-CcccccceEEEEecchhhh
Q psy15524 477 ELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTE-TLKFSKVEHLVLDEADRIL 555 (930)
Q Consensus 477 eLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~-~~~~~~l~~lVlDEah~l~ 555 (930)
+|..++...+...+...+..+ ..-+|++......+...+.++|+|+||+.|.-++...+ .-.+.+++++|+||+|.+.
T Consensus 84 ALn~Di~~rL~~~~~~~G~~v-~vRhGDT~~~er~r~~~~PPdILiTTPEsL~lll~~~~~r~~l~~vr~VIVDEiHel~ 162 (814)
T COG1201 84 ALNNDIRRRLEEPLRELGIEV-AVRHGDTPQSEKQKMLKNPPHILITTPESLAILLNSPKFRELLRDVRYVIVDEIHALA 162 (814)
T ss_pred HHHHHHHHHHHHHHHHcCCcc-ceecCCCChHHhhhccCCCCcEEEeChhHHHHHhcCHHHHHHhcCCcEEEeehhhhhh
Confidence 999999999999988776544 66677766655555566779999999999987776532 2258999999999999999
Q ss_pred hcCcHHHHHHHHHHHhhcCccceEEEEccccCHHHHHHHhhhcCC--CEE-EEccCCCCcccCccceecCCCceEEEEEc
Q psy15524 556 DQGYERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQN--PIQ-IDAADSTDIHNTTDSLVIPDSLKQHFIVT 632 (930)
Q Consensus 556 ~~g~~~~l~~i~~~l~~~~~~~q~vl~SAT~~~~~~~l~~~~~~~--~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 632 (930)
+.-.+..+..-+++|....++.|.+++|||..+ ....++..... +.. +.+........ ....|....... -.
T Consensus 163 ~sKRG~~Lsl~LeRL~~l~~~~qRIGLSATV~~-~~~varfL~g~~~~~~Iv~~~~~k~~~i---~v~~p~~~~~~~-~~ 237 (814)
T COG1201 163 ESKRGVQLALSLERLRELAGDFQRIGLSATVGP-PEEVAKFLVGFGDPCEIVDVSAAKKLEI---KVISPVEDLIYD-EE 237 (814)
T ss_pred ccccchhhhhhHHHHHhhCcccEEEeehhccCC-HHHHHHHhcCCCCceEEEEcccCCcceE---EEEecCCccccc-cc
Confidence 888888888888888887778999999999975 33444444333 333 22222211000 001111000000 01
Q ss_pred CchhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHHHHHHHHHHhhcCCCc
Q psy15524 633 PPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSVKSG 712 (930)
Q Consensus 633 ~~~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~v~~~F~~~~~~ 712 (930)
........+...+.+ ...+|||+||+..++.++..|.+... ..+..+||+++.+.|..++++|++|+.+
T Consensus 238 ~~~~~~~~i~~~v~~---------~~ttLIF~NTR~~aE~l~~~L~~~~~--~~i~~HHgSlSre~R~~vE~~lk~G~lr 306 (814)
T COG1201 238 LWAALYERIAELVKK---------HRTTLIFTNTRSGAERLAFRLKKLGP--DIIEVHHGSLSRELRLEVEERLKEGELK 306 (814)
T ss_pred hhHHHHHHHHHHHhh---------cCcEEEEEeChHHHHHHHHHHHHhcC--CceeeecccccHHHHHHHHHHHhcCCce
Confidence 111233334444432 45899999999999999999998753 5677779999999999999999999999
Q ss_pred EEEeccccccccCCCCccEEEEecCCCChhhHHhhhcccccC-CCCceEEEEeCc
Q psy15524 713 VLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARV-GHEGSSLLFLIP 766 (930)
Q Consensus 713 vLv~T~~~~~GlDip~v~~VI~~~~p~s~~~y~qr~GRagR~-g~~g~~~~~~~~ 766 (930)
++|||+.++-|||+.+|+.|||+..|.+....+||+||+|+. |....++++...
T Consensus 307 avV~TSSLELGIDiG~vdlVIq~~SP~sV~r~lQRiGRsgHr~~~~Skg~ii~~~ 361 (814)
T COG1201 307 AVVATSSLELGIDIGDIDLVIQLGSPKSVNRFLQRIGRAGHRLGEVSKGIIIAED 361 (814)
T ss_pred EEEEccchhhccccCCceEEEEeCCcHHHHHHhHhccccccccCCcccEEEEecC
Confidence 999999999999999999999999999999999999999964 555777777776
|
|
| >COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-40 Score=368.01 Aligned_cols=337 Identities=22% Similarity=0.312 Sum_probs=258.5
Q ss_pred HHHHHHhcCCCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHH
Q psy15524 402 MKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQ 481 (930)
Q Consensus 402 ~~~~l~~~~~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q 481 (930)
+...|++.||+..+++-|.++|..+++|+|+++.+|||+||++||.+|++-. .| -+|||+|..+|...
T Consensus 5 ~~~~L~~~fGy~~FR~gQ~evI~~~l~g~d~lvvmPTGgGKSlCyQiPAll~-----------~G-~TLVVSPLiSLM~D 72 (590)
T COG0514 5 AQQVLKQVFGYASFRPGQQEIIDALLSGKDTLVVMPTGGGKSLCYQIPALLL-----------EG-LTLVVSPLISLMKD 72 (590)
T ss_pred HHHHHHHHhCccccCCCHHHHHHHHHcCCcEEEEccCCCCcchHhhhHHHhc-----------CC-CEEEECchHHHHHH
Confidence 3456778899999999999999999999999999999999999999999832 23 58999999999999
Q ss_pred HHHHHHHhhccCCCcceEEEeCCCchHH---HHHHHh-cCCcEEEECchhHHHhhhccCCcccccceEEEEecchhhhhc
Q psy15524 482 TLEIFTKLCKSFTWIVPSWLTGGEKMKS---EKARIR-KGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQ 557 (930)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~~~gg~~~~~---~~~~~~-~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~l~~~ 557 (930)
+.+.++..+. .+.++.+.-+... ....+. ...++++-+|+++..--.. ..+.-..+.++||||||++.+|
T Consensus 73 QV~~l~~~Gi-----~A~~lnS~l~~~e~~~v~~~l~~g~~klLyisPErl~~~~f~-~~L~~~~i~l~vIDEAHCiSqW 146 (590)
T COG0514 73 QVDQLEAAGI-----RAAYLNSTLSREERQQVLNQLKSGQLKLLYISPERLMSPRFL-ELLKRLPISLVAIDEAHCISQW 146 (590)
T ss_pred HHHHHHHcCc-----eeehhhcccCHHHHHHHHHHHhcCceeEEEECchhhcChHHH-HHHHhCCCceEEechHHHHhhc
Confidence 9999988663 2333333322222 222233 3389999999998432111 1223456899999999999999
Q ss_pred C--cHHHHHHHHHHHhhcCccceEEEEccccCHHHHHHHhhhc--CCCEEEEccCCCCcccCccceecCCCceEEEEEc-
Q psy15524 558 G--YERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTL--QNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVT- 632 (930)
Q Consensus 558 g--~~~~l~~i~~~l~~~~~~~q~vl~SAT~~~~~~~l~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 632 (930)
| |++.+.++-......+ +.+++++|||.++.+..-+...+ .++..+...-. . .++.......
T Consensus 147 GhdFRP~Y~~lg~l~~~~~-~~p~~AlTATA~~~v~~DI~~~L~l~~~~~~~~sfd-----------R-pNi~~~v~~~~ 213 (590)
T COG0514 147 GHDFRPDYRRLGRLRAGLP-NPPVLALTATATPRVRDDIREQLGLQDANIFRGSFD-----------R-PNLALKVVEKG 213 (590)
T ss_pred CCccCHhHHHHHHHHhhCC-CCCEEEEeCCCChHHHHHHHHHhcCCCcceEEecCC-----------C-chhhhhhhhcc
Confidence 9 9899888877766544 88999999999998766544333 34322221110 0 1111111111
Q ss_pred CchhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHHHHHHHHHHhhcCCCc
Q psy15524 633 PPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSVKSG 712 (930)
Q Consensus 633 ~~~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~v~~~F~~~~~~ 712 (930)
....+.. ++... .....+..||||.|++.++.+++.|... |+.+..|||+|+.++|..+.++|..++..
T Consensus 214 ~~~~q~~----fi~~~----~~~~~~~GIIYc~sRk~~E~ia~~L~~~---g~~a~~YHaGl~~~eR~~~q~~f~~~~~~ 282 (590)
T COG0514 214 EPSDQLA----FLATV----LPQLSKSGIIYCLTRKKVEELAEWLRKN---GISAGAYHAGLSNEERERVQQAFLNDEIK 282 (590)
T ss_pred cHHHHHH----HHHhh----ccccCCCeEEEEeeHHhHHHHHHHHHHC---CCceEEecCCCCHHHHHHHHHHHhcCCCc
Confidence 1122222 44321 1122667899999999999999999985 89999999999999999999999999999
Q ss_pred EEEeccccccccCCCCccEEEEecCCCChhhHHhhhcccccCCCCceEEEEeCcccHHHHHHHHhcCC
Q psy15524 713 VLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPSEVKLVEELQNRRI 780 (930)
Q Consensus 713 vLv~T~~~~~GlDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~e~~~~~~l~~~~~ 780 (930)
|+|||.++++|||.|+|++|||||+|.|++.|+|.+|||||+|.+..|++++.+.+....+++.+..-
T Consensus 283 iiVAT~AFGMGIdKpdVRfViH~~lP~s~EsYyQE~GRAGRDG~~a~aill~~~~D~~~~~~~i~~~~ 350 (590)
T COG0514 283 VMVATNAFGMGIDKPDVRFVIHYDLPGSIESYYQETGRAGRDGLPAEAILLYSPEDIRWQRYLIEQSK 350 (590)
T ss_pred EEEEeccccCccCCCCceEEEEecCCCCHHHHHHHHhhccCCCCcceEEEeeccccHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999999999999999999999999988887766543
|
|
| >PRK10917 ATP-dependent DNA helicase RecG; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-39 Score=383.27 Aligned_cols=332 Identities=21% Similarity=0.276 Sum_probs=243.6
Q ss_pred HHHHHHHhcCCCCCCCHHHHHhHHhhhcC------CcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEcc
Q psy15524 401 FMKKNLNEGMNITQVTTVQQLSIQPILDG------GDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILP 474 (930)
Q Consensus 401 ~~~~~l~~~~~~~~~~~iQ~~~i~~il~~------~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~P 474 (930)
.+.+.+.+.++| +||++|++|++.+..+ .+++++||||||||++|++|++..+.. |.+++|++|
T Consensus 249 ~~~~~~~~~l~f-~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~~---------g~q~lilaP 318 (681)
T PRK10917 249 ELLKKFLASLPF-ELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIEA---------GYQAALMAP 318 (681)
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHHc---------CCeEEEEec
Confidence 445556667888 5999999999999986 379999999999999999999988753 778999999
Q ss_pred CHHHHHHHHHHHHHhhccCCCcceEEEeCCCchHH---HHHHHhc-CCcEEEECchhHHHhhhccCCcccccceEEEEec
Q psy15524 475 TRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKS---EKARIRK-GISILVATPGRLLDHCKHTETLKFSKVEHLVLDE 550 (930)
Q Consensus 475 treLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~---~~~~~~~-~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlDE 550 (930)
|++||.|+++.+++++...+ +.+.+++|+..... ....+.. .++|+|+||+++.+ ...+++++++|+||
T Consensus 319 T~~LA~Q~~~~l~~l~~~~~-i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~------~v~~~~l~lvVIDE 391 (681)
T PRK10917 319 TEILAEQHYENLKKLLEPLG-IRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQD------DVEFHNLGLVIIDE 391 (681)
T ss_pred cHHHHHHHHHHHHHHHhhcC-cEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcc------cchhcccceEEEec
Confidence 99999999999999987654 45778888876433 2334444 49999999998743 24578899999999
Q ss_pred chhhhhcCcHHHHHHHHHHHhhcCccceEEEEccccCHHHHHHHhhhcCCCEEEEccCCCCcccCccceecCCCceEEEE
Q psy15524 551 ADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFI 630 (930)
Q Consensus 551 ah~l~~~g~~~~l~~i~~~l~~~~~~~q~vl~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 630 (930)
+|++.... .. .+.......++++||||+.+....+......+...+...... ...+...+.
T Consensus 392 ~Hrfg~~q-----r~---~l~~~~~~~~iL~~SATp~prtl~~~~~g~~~~s~i~~~p~~-----------r~~i~~~~~ 452 (681)
T PRK10917 392 QHRFGVEQ-----RL---ALREKGENPHVLVMTATPIPRTLAMTAYGDLDVSVIDELPPG-----------RKPITTVVI 452 (681)
T ss_pred hhhhhHHH-----HH---HHHhcCCCCCEEEEeCCCCHHHHHHHHcCCCceEEEecCCCC-----------CCCcEEEEe
Confidence 99874221 11 122223367899999998776544443222233332211110 112333222
Q ss_pred EcCchhhHHHHHHHHHhhccCCCcCCCceEEEEecchh--------hHHHHHHHHhhhcCCCceEEEecCCCCHHHHHHH
Q psy15524 631 VTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQD--------MADYHTELLSTVLGENIAFFKLHGSMSQSERTEV 702 (930)
Q Consensus 631 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~--------~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~v 702 (930)
... +...+...+..... .+.+++|||+..+ .++.+++.|.+.+. ++.+..+||+|++.+|..+
T Consensus 453 --~~~-~~~~~~~~i~~~~~-----~g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~~-~~~v~~lHG~m~~~eR~~i 523 (681)
T PRK10917 453 --PDS-RRDEVYERIREEIA-----KGRQAYVVCPLIEESEKLDLQSAEETYEELQEAFP-ELRVGLLHGRMKPAEKDAV 523 (681)
T ss_pred --Ccc-cHHHHHHHHHHHHH-----cCCcEEEEEcccccccchhHHHHHHHHHHHHHHCC-CCcEEEEeCCCCHHHHHHH
Confidence 222 22333444444332 2679999999654 45566777776543 4778899999999999999
Q ss_pred HHHhhcCCCcEEEeccccccccCCCCccEEEEecCCC-ChhhHHhhhcccccCCCCceEEEEeC-c---ccHHHHHHHHh
Q psy15524 703 FKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPS-SSTDYVHRVGRTARVGHEGSSLLFLI-P---SEVKLVEELQN 777 (930)
Q Consensus 703 ~~~F~~~~~~vLv~T~~~~~GlDip~v~~VI~~~~p~-s~~~y~qr~GRagR~g~~g~~~~~~~-~---~e~~~~~~l~~ 777 (930)
+++|++|+.+|||||+++++|+|+|++++||+++.|. ....|.||+||+||.|..|.|++++. + .....++.+.+
T Consensus 524 ~~~F~~g~~~ILVaT~vie~GiDip~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~ill~~~~~~~~~~~rl~~~~~ 603 (681)
T PRK10917 524 MAAFKAGEIDILVATTVIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGAAQSYCVLLYKDPLSETARERLKIMRE 603 (681)
T ss_pred HHHHHcCCCCEEEECcceeeCcccCCCcEEEEeCCCCCCHHHHHHHhhcccCCCCceEEEEEECCCCChhHHHHHHHHHH
Confidence 9999999999999999999999999999999999987 57888899999999999999999995 4 23334555543
|
|
| >PRK10689 transcription-repair coupling factor; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-39 Score=394.89 Aligned_cols=321 Identities=19% Similarity=0.237 Sum_probs=246.1
Q ss_pred HHHHHHHHhcCCCCCCCHHHHHhHHhhhcC------CcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEc
Q psy15524 400 PFMKKNLNEGMNITQVTTVQQLSIQPILDG------GDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIIL 473 (930)
Q Consensus 400 ~~~~~~l~~~~~~~~~~~iQ~~~i~~il~~------~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~ 473 (930)
....+.+.+.|+| .+|++|.+||+.++.+ .|++++|+||+|||.+|+.+++..+. .|.+++||+
T Consensus 587 ~~~~~~~~~~~~~-~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~---------~g~qvlvLv 656 (1147)
T PRK10689 587 REQYQLFCDSFPF-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVE---------NHKQVAVLV 656 (1147)
T ss_pred HHHHHHHHHhCCC-CCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHH---------cCCeEEEEe
Confidence 3455556667898 7999999999999987 89999999999999999988887653 378899999
Q ss_pred cCHHHHHHHHHHHHHhhccCCCcceEEEeCCCchHHHHHHH---h-cCCcEEEECchhHHHhhhccCCcccccceEEEEe
Q psy15524 474 PTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARI---R-KGISILVATPGRLLDHCKHTETLKFSKVEHLVLD 549 (930)
Q Consensus 474 PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~---~-~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlD 549 (930)
||++||.|+++.|.+.+..++ +.+.+++|+.....+...+ . .+++|+|+||+.+ . ..+.+++++++|||
T Consensus 657 PT~eLA~Q~~~~f~~~~~~~~-v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL----~--~~v~~~~L~lLVID 729 (1147)
T PRK10689 657 PTTLLAQQHYDNFRDRFANWP-VRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLL----Q--SDVKWKDLGLLIVD 729 (1147)
T ss_pred CcHHHHHHHHHHHHHhhccCC-ceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHH----h--CCCCHhhCCEEEEe
Confidence 999999999999998876654 3455677776655444332 2 3589999999643 2 23567899999999
Q ss_pred cchhhhhcCcHHHHHHHHHHHhhcCccceEEEEccccCHHHHHHHhhhcCCCEEEEccCCCCcccCccceecCCCceEEE
Q psy15524 550 EADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHF 629 (930)
Q Consensus 550 Eah~l~~~g~~~~l~~i~~~l~~~~~~~q~vl~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 629 (930)
|+|++ |+.. ... +...++++|+++||||+++....++...+.++..+....... ..+.+.+
T Consensus 730 Eahrf---G~~~--~e~---lk~l~~~~qvLl~SATpiprtl~l~~~gl~d~~~I~~~p~~r-----------~~v~~~~ 790 (1147)
T PRK10689 730 EEHRF---GVRH--KER---IKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARR-----------LAVKTFV 790 (1147)
T ss_pred chhhc---chhH--HHH---HHhcCCCCcEEEEcCCCCHHHHHHHHhhCCCcEEEecCCCCC-----------CCceEEE
Confidence 99997 3322 222 333345889999999998888888888888888776533211 1123332
Q ss_pred EEcCchhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHHHHHHHHHHhhcC
Q psy15524 630 IVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSV 709 (930)
Q Consensus 630 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~v~~~F~~~ 709 (930)
........... .+.... .+++++|||++++.++.+++.|.+.++ +..+..+||+|++.+|..++.+|++|
T Consensus 791 ~~~~~~~~k~~---il~el~------r~gqv~vf~n~i~~ie~la~~L~~~~p-~~~v~~lHG~m~q~eRe~im~~Fr~G 860 (1147)
T PRK10689 791 REYDSLVVREA---ILREIL------RGGQVYYLYNDVENIQKAAERLAELVP-EARIAIGHGQMRERELERVMNDFHHQ 860 (1147)
T ss_pred EecCcHHHHHH---HHHHHh------cCCeEEEEECCHHHHHHHHHHHHHhCC-CCcEEEEeCCCCHHHHHHHHHHHHhc
Confidence 22222111111 122111 157899999999999999999988753 56788899999999999999999999
Q ss_pred CCcEEEeccccccccCCCCccEEEEecCC-CChhhHHhhhcccccCCCCceEEEEeCc
Q psy15524 710 KSGVLICTDVAARGLDLPLVDWIVQYTAP-SSSTDYVHRVGRTARVGHEGSSLLFLIP 766 (930)
Q Consensus 710 ~~~vLv~T~~~~~GlDip~v~~VI~~~~p-~s~~~y~qr~GRagR~g~~g~~~~~~~~ 766 (930)
+.+|||||++++||+|+|++++||..+.+ .+..+|+||+||+||.|+.|.|++++.+
T Consensus 861 k~~VLVaTdIierGIDIP~v~~VIi~~ad~fglaq~~Qr~GRvGR~g~~g~a~ll~~~ 918 (1147)
T PRK10689 861 RFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPH 918 (1147)
T ss_pred CCCEEEECchhhcccccccCCEEEEecCCCCCHHHHHHHhhccCCCCCceEEEEEeCC
Confidence 99999999999999999999999966543 4677899999999999999999998854
|
|
| >KOG0952|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-39 Score=365.70 Aligned_cols=387 Identities=22% Similarity=0.274 Sum_probs=295.6
Q ss_pred cCCCCCCCHHHHHhHHhhhcC-CcEEEEccCCCchhHHhhHHHHHHHHhhCc-ccCCCCCeeEEEEccCHHHHHHHHHHH
Q psy15524 409 GMNITQVTTVQQLSIQPILDG-GDVLVRSQTGSGKTLAYAIPIIQKLQEMRP-KISRKDGIYAVIILPTRELALQTLEIF 486 (930)
Q Consensus 409 ~~~~~~~~~iQ~~~i~~il~~-~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~-~~~~~~~~~~lil~PtreLa~Q~~~~~ 486 (930)
.|+|.+++.+|+.++|.++.. .|++||||||||||..|++.|++.+..... .....++.+++||+|+++||.++++.|
T Consensus 105 ~f~f~~fN~iQS~vFp~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~~~ 184 (1230)
T KOG0952|consen 105 FFSFEEFNRIQSEVFPVAYKSNENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVDKF 184 (1230)
T ss_pred cccHHHHHHHHHHhhhhhhcCCCCEEEECCCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEechHHHHHHHHHHH
Confidence 479999999999999999965 679999999999999999999999986322 222356789999999999999999999
Q ss_pred HHhhccCCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhccC--CcccccceEEEEecchhhhhcCcHHHHH
Q psy15524 487 TKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTE--TLKFSKVEHLVLDEADRILDQGYERDIA 564 (930)
Q Consensus 487 ~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~--~~~~~~l~~lVlDEah~l~~~g~~~~l~ 564 (930)
.+.+.+++ +.+.-++|+....... ...++|+|+||++|+-..+++. .-.++.+++|||||+|.+-| ..++.++
T Consensus 185 ~kkl~~~g-i~v~ELTGD~ql~~te---i~~tqiiVTTPEKwDvvTRk~~~d~~l~~~V~LviIDEVHlLhd-~RGpvlE 259 (1230)
T KOG0952|consen 185 SKKLAPLG-ISVRELTGDTQLTKTE---IADTQIIVTTPEKWDVVTRKSVGDSALFSLVRLVIIDEVHLLHD-DRGPVLE 259 (1230)
T ss_pred hhhccccc-ceEEEecCcchhhHHH---HHhcCEEEecccceeeeeeeeccchhhhhheeeEEeeeehhhcC-cccchHH
Confidence 98887666 4566788887655443 2468999999999987766543 22467899999999997754 4577777
Q ss_pred HHHHHHh----hcCccceEEEEccccCHHHHHHHhhhcCCCE-EEEccCCCCcccCccceecCCCceEEEEEcCch---h
Q psy15524 565 EFLEILK----KQKPQFQSILLSATLTPAVQRLAGMTLQNPI-QIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPK---L 636 (930)
Q Consensus 565 ~i~~~l~----~~~~~~q~vl~SAT~~~~~~~l~~~~~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~ 636 (930)
.|+.+.. ......++|++|||+|+ ..+++.+.-.||. -+. ..+....|..+.+.++-.+.. .
T Consensus 260 tiVaRtlr~vessqs~IRivgLSATlPN-~eDvA~fL~vn~~~glf---------sFd~~yRPvpL~~~~iG~k~~~~~~ 329 (1230)
T KOG0952|consen 260 TIVARTLRLVESSQSMIRIVGLSATLPN-YEDVARFLRVNPYAGLF---------SFDQRYRPVPLTQGFIGIKGKKNRQ 329 (1230)
T ss_pred HHHHHHHHHHHhhhhheEEEEeeccCCC-HHHHHHHhcCCCcccee---------eecccccccceeeeEEeeecccchh
Confidence 7776665 44568899999999997 5555555444421 111 112234566677777655544 1
Q ss_pred hHH----HHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhh----------------------cCCCceEEEe
Q psy15524 637 RLV----ALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTV----------------------LGENIAFFKL 690 (930)
Q Consensus 637 ~~~----~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~----------------------~~~~~~~~~l 690 (930)
... ...+.+.+... .+.+++|||.++..+...++.|.+. +..|+.++
T Consensus 330 ~~~~~d~~~~~kv~e~~~-----~g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~~~k~l~elf~~g~~iH-- 402 (1230)
T KOG0952|consen 330 QKKNIDEVCYDKVVEFLQ-----EGHQVLVFVHSRNETIRTAKKLRERAETNGEKDLFLPSPRNKQLKELFQQGMGIH-- 402 (1230)
T ss_pred hhhhHHHHHHHHHHHHHH-----cCCeEEEEEecChHHHHHHHHHHHHHHhcCcccccCCChhhHHHHHHHHhhhhhc--
Confidence 111 11111112111 2789999999998887777666433 22244544
Q ss_pred cCCCCHHHHHHHHHHhhcCCCcEEEeccccccccCCCCccEEEEec----CC------CChhhHHhhhcccccCCC--Cc
Q psy15524 691 HGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYT----AP------SSSTDYVHRVGRTARVGH--EG 758 (930)
Q Consensus 691 hg~~~~~~R~~v~~~F~~~~~~vLv~T~~~~~GlDip~v~~VI~~~----~p------~s~~~y~qr~GRagR~g~--~g 758 (930)
|++|..++|..+++.|..|.++||+||..+++|+|+|+.-+||-.. .. ....+.+|..|||||++. .|
T Consensus 403 hAGm~r~DR~l~E~~F~~G~i~vL~cTaTLAwGVNLPA~aViIKGT~~ydsskg~f~dlgilDVlQifGRAGRPqFd~~G 482 (1230)
T KOG0952|consen 403 HAGMLRSDRQLVEKEFKEGHIKVLCCTATLAWGVNLPAYAVIIKGTQVYDSSKGSFVDLGILDVLQIFGRAGRPQFDSSG 482 (1230)
T ss_pred ccccchhhHHHHHHHHhcCCceEEEecceeeeccCCcceEEEecCCcccccccCceeeehHHHHHHHHhccCCCCCCCCc
Confidence 9999999999999999999999999999999999999988888533 22 256789999999999865 68
Q ss_pred eEEEEeCcccHHHHHHHHhcCCccchhchHHHHHhhhhhhccCccccccccchHHHHHHHHHHH
Q psy15524 759 SSLLFLIPSEVKLVEELQNRRIRIEEIKLKDCLQNLLSVKMEGDLSRLADGNVETAATALQMSF 822 (930)
Q Consensus 759 ~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 822 (930)
.++++.+.+-...+..|....-++++.-+..++++|++++..|.++. ++++.+|+...+
T Consensus 483 ~giIiTt~dkl~~Y~sLl~~~~piES~~~~~L~dnLnAEi~LgTVt~-----VdeAVeWL~yTy 541 (1230)
T KOG0952|consen 483 EGIIITTRDKLDHYESLLTGQNPIESQLLPCLIDNLNAEISLGTVTN-----VDEAVEWLKYTY 541 (1230)
T ss_pred eEEEEecccHHHHHHHHHcCCChhHHHHHHHHHHhhhhheeeceeec-----HHHHHHHhhcee
Confidence 89998888888889999888889999999999999999988888764 788888987655
|
|
| >PRK09751 putative ATP-dependent helicase Lhr; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-39 Score=393.45 Aligned_cols=325 Identities=21% Similarity=0.236 Sum_probs=224.3
Q ss_pred EEccCCCchhHHhhHHHHHHHHhhCcc----cCCCCCeeEEEEccCHHHHHHHHHHHHHhhc-----------cCCCcce
Q psy15524 434 VRSQTGSGKTLAYAIPIIQKLQEMRPK----ISRKDGIYAVIILPTRELALQTLEIFTKLCK-----------SFTWIVP 498 (930)
Q Consensus 434 v~a~TGsGKTl~~~lp~l~~l~~~~~~----~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~-----------~~~~~~~ 498 (930)
|+||||||||+||.+|+++.+...... .....+.++|||+|+++|+.|+++.++..+. ....+.+
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V 80 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRV 80 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEE
Confidence 579999999999999999998763211 0113468999999999999999998875321 1123567
Q ss_pred EEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhccCCcccccceEEEEecchhhhhcCcHHHHHHHHHHHhhc-Cccc
Q psy15524 499 SWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQ-KPQF 577 (930)
Q Consensus 499 ~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~l~~~g~~~~l~~i~~~l~~~-~~~~ 577 (930)
...+|+.......+.+.+.++|+|+|||+|..++.+.....++++++|||||+|.+.+..++..+...++.+... ..+.
T Consensus 81 ~vrtGDt~~~eR~rll~~ppdILVTTPEsL~~LLtsk~r~~L~~Vr~VIVDE~H~L~g~kRG~~Lel~LeRL~~l~~~~~ 160 (1490)
T PRK09751 81 GIRTGDTPAQERSKLTRNPPDILITTPESLYLMLTSRARETLRGVETVIIDEVHAVAGSKRGAHLALSLERLDALLHTSA 160 (1490)
T ss_pred EEEECCCCHHHHHHHhcCCCCEEEecHHHHHHHHhhhhhhhhccCCEEEEecHHHhcccccccHHHHHHHHHHHhCCCCC
Confidence 778888877666666667899999999999988765333468999999999999999776666555555555543 3468
Q ss_pred eEEEEccccCHHHHHHHhhhcC-CCEEEEccCCCCcccCccceecCC-CceEEEEE----cC------chhhHHHHHHHH
Q psy15524 578 QSILLSATLTPAVQRLAGMTLQ-NPIQIDAADSTDIHNTTDSLVIPD-SLKQHFIV----TP------PKLRLVALASFI 645 (930)
Q Consensus 578 q~vl~SAT~~~~~~~l~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~----~~------~~~~~~~l~~~l 645 (930)
|++++|||+++ ..+++..... +|..+........ ... ...+|. ........ .. .......+...+
T Consensus 161 QrIgLSATI~n-~eevA~~L~g~~pv~Iv~~~~~r~-~~l-~v~vp~~d~~~~~~~~~~~~~~~~~~r~~~i~~~v~~~i 237 (1490)
T PRK09751 161 QRIGLSATVRS-ASDVAAFLGGDRPVTVVNPPAMRH-PQI-RIVVPVANMDDVSSVASGTGEDSHAGREGSIWPYIETGI 237 (1490)
T ss_pred eEEEEEeeCCC-HHHHHHHhcCCCCEEEECCCCCcc-cce-EEEEecCchhhccccccccccccchhhhhhhhHHHHHHH
Confidence 99999999987 3555544332 3554432111100 000 011110 00000000 00 000000111111
Q ss_pred HhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCC------------------------------CceEEEecCCCC
Q psy15524 646 LGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGE------------------------------NIAFFKLHGSMS 695 (930)
Q Consensus 646 ~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~------------------------------~~~~~~lhg~~~ 695 (930)
..... ...++||||+|+..++.++..|++.... ...+..+||+|+
T Consensus 238 l~~i~-----~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLS 312 (1490)
T PRK09751 238 LDEVL-----RHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVS 312 (1490)
T ss_pred HHHHh-----cCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeeccccCC
Confidence 11111 1568999999999999999888765310 122567899999
Q ss_pred HHHHHHHHHHhhcCCCcEEEeccccccccCCCCccEEEEecCCCChhhHHhhhcccccCCCCceEEEEeCcc
Q psy15524 696 QSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPS 767 (930)
Q Consensus 696 ~~~R~~v~~~F~~~~~~vLv~T~~~~~GlDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~ 767 (930)
+++|..+++.|++|+.++||||+++++|||+++|++|||++.|.+..+|+||+|||||. ..|.+..++.+.
T Consensus 313 keeR~~IE~~fK~G~LrvLVATssLELGIDIg~VDlVIq~gsP~sVas~LQRiGRAGR~-~gg~s~gli~p~ 383 (1490)
T PRK09751 313 KEQRAITEQALKSGELRCVVATSSLELGIDMGAVDLVIQVATPLSVASGLQRIGRAGHQ-VGGVSKGLFFPR 383 (1490)
T ss_pred HHHHHHHHHHHHhCCceEEEeCcHHHccCCcccCCEEEEeCCCCCHHHHHHHhCCCCCC-CCCccEEEEEeC
Confidence 99999999999999999999999999999999999999999999999999999999996 334443334443
|
|
| >PRK09200 preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-38 Score=368.50 Aligned_cols=344 Identities=18% Similarity=0.205 Sum_probs=242.7
Q ss_pred HHHHHHhcCCCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHH
Q psy15524 402 MKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQ 481 (930)
Q Consensus 402 ~~~~l~~~~~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q 481 (930)
+.++..+.+|+ .|+++|..+++.+++|+ +++++||+|||++|++|++..... |.+++|++||++||.|
T Consensus 67 vrea~~R~~g~-~p~~vQl~~~~~l~~G~--Iaem~TGeGKTL~a~lp~~l~al~---------G~~v~VvTpt~~LA~q 134 (790)
T PRK09200 67 VREAAKRVLGM-RPYDVQLIGALVLHEGN--IAEMQTGEGKTLTATMPLYLNALE---------GKGVHLITVNDYLAKR 134 (790)
T ss_pred HHHHHHHHhCC-CCchHHHHhHHHHcCCc--eeeecCCCcchHHHHHHHHHHHHc---------CCCeEEEeCCHHHHHH
Confidence 44555556677 89999999999988876 999999999999999999866553 7889999999999999
Q ss_pred HHHHHHHhhccCCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhH-HHhhhcc-----CCcccccceEEEEecchhhh
Q psy15524 482 TLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRL-LDHCKHT-----ETLKFSKVEHLVLDEADRIL 555 (930)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl-~~~l~~~-----~~~~~~~l~~lVlDEah~l~ 555 (930)
.++.+.+++..++ +.++++.||.+...+++ ...+++|+|+||+++ .|+++.. ....++.+.++|+||||+++
T Consensus 135 d~e~~~~l~~~lG-l~v~~i~g~~~~~~~r~-~~y~~dIvygT~~~l~fDyLrd~~~~~~~~~~~r~~~~~IvDEaDsiL 212 (790)
T PRK09200 135 DAEEMGQVYEFLG-LTVGLNFSDIDDASEKK-AIYEADIIYTTNSELGFDYLRDNLADSKEDKVQRPLNYAIIDEIDSIL 212 (790)
T ss_pred HHHHHHHHHhhcC-CeEEEEeCCCCcHHHHH-HhcCCCEEEECCccccchhHHhccccchhhhcccccceEEEeccccce
Confidence 9999999998765 56778888877433433 446799999999999 5544432 12356889999999999986
Q ss_pred -h---------------cCcHHHHHHHHHHHhhc-----CccceEEEEccccCHHHH-----------------HHHhh-
Q psy15524 556 -D---------------QGYERDIAEFLEILKKQ-----KPQFQSILLSATLTPAVQ-----------------RLAGM- 596 (930)
Q Consensus 556 -~---------------~g~~~~l~~i~~~l~~~-----~~~~q~vl~SAT~~~~~~-----------------~l~~~- 596 (930)
| ..+......++..+... ....+.+.++..-...++ .+...
T Consensus 213 iDea~tpliisg~~~~~~~~y~~~~~~~~~l~~~~dy~~d~~~~~~~lt~~g~~~~e~~~~i~~l~~~~~~~~~~~i~~A 292 (790)
T PRK09200 213 LDEAQTPLIISGKPRVQSNLYHIAAKFVKTLEEDVDYEFDEEKKEVWLTDQGIEKAESYFGIDNLYSLEHQVLYRHIILA 292 (790)
T ss_pred eccCCCceeeeCCCccccHHHHHHHHHHHhcccCCCeEEecCCCeEEecHhHHHHHHHhcCCccccChhhhHHHHHHHHH
Confidence 1 11223344444444321 112233333332000000 00000
Q ss_pred -----hc-CCCEEEE-------ccCC---------------------------------------------------CCc
Q psy15524 597 -----TL-QNPIQID-------AADS---------------------------------------------------TDI 612 (930)
Q Consensus 597 -----~~-~~~~~i~-------~~~~---------------------------------------------------~~~ 612 (930)
.+ .+-.++- +... .-.
T Consensus 293 l~A~~~~~~d~dYiV~~~~v~ivD~~TGr~~~gr~~s~GlhQaieaKe~v~i~~e~~t~a~It~q~~fr~Y~kl~GmTGT 372 (790)
T PRK09200 293 LRAHVLFKRDVDYIVYDGEIVLVDRFTGRVLPGRKLQDGLHQAIEAKEGVEITEENRTMASITIQNLFRMFPKLSGMTGT 372 (790)
T ss_pred HHHHHHhhcCCcEEEECCEEEEEECCCCcCCCCCccChHHHHHHHHhcCCCcCCCceehhhhhHHHHHHHhHHHhccCCC
Confidence 00 1110100 0000 000
Q ss_pred ----------ccCccceecCCCce------EEEEEcCchhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHH
Q psy15524 613 ----------HNTTDSLVIPDSLK------QHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTEL 676 (930)
Q Consensus 613 ----------~~~~~~~~~~~~~~------~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~ 676 (930)
........+|.... ...+......|..++...+..... .+.++||||+|++.++.+++.
T Consensus 373 a~t~~~e~~~~Y~l~v~~IPt~kp~~r~d~~~~i~~~~~~K~~al~~~i~~~~~-----~~~pvLIf~~t~~~se~l~~~ 447 (790)
T PRK09200 373 AKTEEKEFFEVYNMEVVQIPTNRPIIRIDYPDKVFVTLDEKYKAVIEEVKERHE-----TGRPVLIGTGSIEQSETFSKL 447 (790)
T ss_pred ChHHHHHHHHHhCCcEEECCCCCCcccccCCCeEEcCHHHHHHHHHHHHHHHHh-----cCCCEEEEeCcHHHHHHHHHH
Confidence 00011122332221 122345667788888887765321 278999999999999999999
Q ss_pred HhhhcCCCceEEEecCCCCHHHHHHHHHHhhcCCCcEEEeccccccccCC---CCcc-----EEEEecCCCChhhHHhhh
Q psy15524 677 LSTVLGENIAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDL---PLVD-----WIVQYTAPSSSTDYVHRV 748 (930)
Q Consensus 677 l~~~~~~~~~~~~lhg~~~~~~R~~v~~~F~~~~~~vLv~T~~~~~GlDi---p~v~-----~VI~~~~p~s~~~y~qr~ 748 (930)
|.+. |+.+..+||++.+.++..+..+++.| .|+||||+++||+|+ |+|. +||+++.|.+...|+||+
T Consensus 448 L~~~---gi~~~~L~~~~~~~e~~~i~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~GGL~VI~~d~p~s~r~y~qr~ 522 (790)
T PRK09200 448 LDEA---GIPHNLLNAKNAAKEAQIIAEAGQKG--AVTVATNMAGRGTDIKLGEGVHELGGLAVIGTERMESRRVDLQLR 522 (790)
T ss_pred HHHC---CCCEEEecCCccHHHHHHHHHcCCCC--eEEEEccchhcCcCCCcccccccccCcEEEeccCCCCHHHHHHhh
Confidence 9885 89999999999999999888888877 599999999999999 7998 999999999999999999
Q ss_pred cccccCCCCceEEEEeCcccH
Q psy15524 749 GRTARVGHEGSSLLFLIPSEV 769 (930)
Q Consensus 749 GRagR~g~~g~~~~~~~~~e~ 769 (930)
|||||.|.+|.++.|++.+|.
T Consensus 523 GRtGR~G~~G~s~~~is~eD~ 543 (790)
T PRK09200 523 GRSGRQGDPGSSQFFISLEDD 543 (790)
T ss_pred ccccCCCCCeeEEEEEcchHH
Confidence 999999999999999997655
|
|
| >TIGR00643 recG ATP-dependent DNA helicase RecG | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-38 Score=370.50 Aligned_cols=321 Identities=21% Similarity=0.271 Sum_probs=232.6
Q ss_pred HHHHHHhcCCCCCCCHHHHHhHHhhhcC------CcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccC
Q psy15524 402 MKKNLNEGMNITQVTTVQQLSIQPILDG------GDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPT 475 (930)
Q Consensus 402 ~~~~l~~~~~~~~~~~iQ~~~i~~il~~------~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt 475 (930)
....+.+.++| +||++|++||+.++.+ .+.+++||||||||++|++|++..+.. |.+++|++||
T Consensus 224 ~~~~~~~~lpf-~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~~---------g~qvlilaPT 293 (630)
T TIGR00643 224 LLTKFLASLPF-KLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIEA---------GYQVALMAPT 293 (630)
T ss_pred HHHHHHHhCCC-CCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHHc---------CCcEEEECCH
Confidence 34444456888 7999999999999976 258999999999999999999988753 6789999999
Q ss_pred HHHHHHHHHHHHHhhccCCCcceEEEeCCCchHH---HHHHHhc-CCcEEEECchhHHHhhhccCCcccccceEEEEecc
Q psy15524 476 RELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKS---EKARIRK-GISILVATPGRLLDHCKHTETLKFSKVEHLVLDEA 551 (930)
Q Consensus 476 reLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~---~~~~~~~-~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlDEa 551 (930)
++||.|+++.+++++...+ +.+.+++|+..... ....+.. .++|+|+||+.+.+ ...+.+++++|+||+
T Consensus 294 ~~LA~Q~~~~~~~l~~~~g-i~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~------~~~~~~l~lvVIDEa 366 (630)
T TIGR00643 294 EILAEQHYNSLRNLLAPLG-IEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQE------KVEFKRLALVIIDEQ 366 (630)
T ss_pred HHHHHHHHHHHHHHhcccC-cEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhc------cccccccceEEEech
Confidence 9999999999999987654 45677888876543 2333333 47999999998753 245788999999999
Q ss_pred hhhhhcCcHHHHHHHHHHHhhcCccceEEEEccccCHHHHHHHhhhcCCCEEEEccCCCCcccCccceecCCCceEEEEE
Q psy15524 552 DRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIV 631 (930)
Q Consensus 552 h~l~~~g~~~~l~~i~~~l~~~~~~~q~vl~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 631 (930)
|++..... ..+...... ....++++||||+.+....+......+...+...... ...+...+
T Consensus 367 H~fg~~qr----~~l~~~~~~-~~~~~~l~~SATp~prtl~l~~~~~l~~~~i~~~p~~-----------r~~i~~~~-- 428 (630)
T TIGR00643 367 HRFGVEQR----KKLREKGQG-GFTPHVLVMSATPIPRTLALTVYGDLDTSIIDELPPG-----------RKPITTVL-- 428 (630)
T ss_pred hhccHHHH----HHHHHhccc-CCCCCEEEEeCCCCcHHHHHHhcCCcceeeeccCCCC-----------CCceEEEE--
Confidence 98643211 112222111 1257899999998765433322111111111110000 01122222
Q ss_pred cCchhhHHHHHHHHHhhccCCCcCCCceEEEEecchh--------hHHHHHHHHhhhcCCCceEEEecCCCCHHHHHHHH
Q psy15524 632 TPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQD--------MADYHTELLSTVLGENIAFFKLHGSMSQSERTEVF 703 (930)
Q Consensus 632 ~~~~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~--------~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~v~ 703 (930)
.....+ ..+...+..... .+.+++|||+.++ .++.+++.|.+.+ .+..+..+||+|++.+|..++
T Consensus 429 ~~~~~~-~~~~~~i~~~l~-----~g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~-~~~~v~~lHG~m~~~eR~~i~ 501 (630)
T TIGR00643 429 IKHDEK-DIVYEFIEEEIA-----KGRQAYVVYPLIEESEKLDLKAAEALYERLKKAF-PKYNVGLLHGRMKSDEKEAVM 501 (630)
T ss_pred eCcchH-HHHHHHHHHHHH-----hCCcEEEEEccccccccchHHHHHHHHHHHHhhC-CCCcEEEEeCCCCHHHHHHHH
Confidence 222222 334444443322 1678999998764 4556667776654 467888999999999999999
Q ss_pred HHhhcCCCcEEEeccccccccCCCCccEEEEecCCC-ChhhHHhhhcccccCCCCceEEEEe
Q psy15524 704 KTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPS-SSTDYVHRVGRTARVGHEGSSLLFL 764 (930)
Q Consensus 704 ~~F~~~~~~vLv~T~~~~~GlDip~v~~VI~~~~p~-s~~~y~qr~GRagR~g~~g~~~~~~ 764 (930)
++|++|+.+|||||+++++|+|+|++++||+++.|. +...|.||+||+||.|+.|.|++++
T Consensus 502 ~~F~~g~~~ILVaT~vie~GvDiP~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~il~~ 563 (630)
T TIGR00643 502 EEFREGEVDILVATTVIEVGVDVPNATVMVIEDAERFGLSQLHQLRGRVGRGDHQSYCLLVY 563 (630)
T ss_pred HHHHcCCCCEEEECceeecCcccCCCcEEEEeCCCcCCHHHHHHHhhhcccCCCCcEEEEEE
Confidence 999999999999999999999999999999999986 6788889999999999999999999
|
|
| >KOG0330|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-39 Score=328.20 Aligned_cols=246 Identities=34% Similarity=0.517 Sum_probs=223.8
Q ss_pred CCCccCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHH
Q psy15524 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKL 80 (930)
Q Consensus 1 ~g~~~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~ 80 (930)
+||+.||++|+++||.++.|+|+|+.|.||||||.+|++|+++++...+ ..++++||+||||||.|+.+.++.+
T Consensus 79 l~~~~PT~IQ~~aiP~~L~g~dvIglAeTGSGKT~afaLPIl~~LL~~p------~~~~~lVLtPtRELA~QI~e~fe~L 152 (476)
T KOG0330|consen 79 LGWKKPTKIQSEAIPVALGGRDVIGLAETGSGKTGAFALPILQRLLQEP------KLFFALVLTPTRELAQQIAEQFEAL 152 (476)
T ss_pred hCcCCCchhhhhhcchhhCCCcEEEEeccCCCchhhhHHHHHHHHHcCC------CCceEEEecCcHHHHHHHHHHHHHh
Confidence 4899999999999999999999999999999999999999999998733 2478999999999999999999999
Q ss_pred hhhcCCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCcHHHHHHHHHH
Q psy15524 81 CKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEI 160 (930)
Q Consensus 81 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~~~~~~~i~~~ 160 (930)
+...+ +.+.++.||.+...+...+.+.|||+|+||++|.+++.+.+.+.+..++++|+||||+++++.|.+.+.+|+..
T Consensus 153 g~~ig-lr~~~lvGG~~m~~q~~~L~kkPhilVaTPGrL~dhl~~Tkgf~le~lk~LVlDEADrlLd~dF~~~ld~ILk~ 231 (476)
T KOG0330|consen 153 GSGIG-LRVAVLVGGMDMMLQANQLSKKPHILVATPGRLWDHLENTKGFSLEQLKFLVLDEADRLLDMDFEEELDYILKV 231 (476)
T ss_pred ccccC-eEEEEEecCchHHHHHHHhhcCCCEEEeCcHHHHHHHHhccCccHHHhHHHhhchHHhhhhhhhHHHHHHHHHh
Confidence 88777 88889999999999999999999999999999999999889999999999999999999999998888877766
Q ss_pred HhhcCCCceEEEEEeecCCCccccccccccccccccchhhhhhhhhhhccchhhHHHHHHHHhhcCcCceEEEEecccch
Q psy15524 161 LKKQKPQFQSILLSATLTPATCWCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLTP 240 (930)
Q Consensus 161 l~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~de~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~sat~~~ 240 (930)
++. .+|+++||||++.
T Consensus 232 ip~----------------------------------------------------------------erqt~LfsATMt~ 247 (476)
T KOG0330|consen 232 IPR----------------------------------------------------------------ERQTFLFSATMTK 247 (476)
T ss_pred cCc----------------------------------------------------------------cceEEEEEeecch
Confidence 642 3499999999999
Q ss_pred HHHHhhhccccCCeeeccCCcccccCCCcccccCCCceeEEEEcCcchhHHHHHHHHhhhccccccCCcceEEEEEeccc
Q psy15524 241 AVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQD 320 (930)
Q Consensus 241 ~~~~l~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~iVF~~s~~ 320 (930)
.+.++...-+++|..+.+.... ...+++.|.|.+++.++|...|+.+| +...+.++|||||+..
T Consensus 248 kv~kL~rasl~~p~~v~~s~ky---------~tv~~lkQ~ylfv~~k~K~~yLV~ll-------~e~~g~s~iVF~~t~~ 311 (476)
T KOG0330|consen 248 KVRKLQRASLDNPVKVAVSSKY---------QTVDHLKQTYLFVPGKDKDTYLVYLL-------NELAGNSVIVFCNTCN 311 (476)
T ss_pred hhHHHHhhccCCCeEEeccchh---------cchHHhhhheEeccccccchhHHHHH-------HhhcCCcEEEEEeccc
Confidence 9999999889999999776655 45688999999999999999999999 4567789999999999
Q ss_pred chhhhHHHHhhhh
Q psy15524 321 MADYHTELLSTKK 333 (930)
Q Consensus 321 ~~~~l~~~L~~~~ 333 (930)
+++.++-.|+..|
T Consensus 312 tt~~la~~L~~lg 324 (476)
T KOG0330|consen 312 TTRFLALLLRNLG 324 (476)
T ss_pred hHHHHHHHHHhcC
Confidence 9999999998765
|
|
| >TIGR03714 secA2 accessory Sec system translocase SecA2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-37 Score=357.12 Aligned_cols=335 Identities=18% Similarity=0.173 Sum_probs=229.9
Q ss_pred CCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHHHHhhccCC
Q psy15524 415 VTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFT 494 (930)
Q Consensus 415 ~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~ 494 (930)
++|+|.|+++.+..+++.+++++||+|||++|++|++..... |..++|++||++||.|+++.+..++..++
T Consensus 69 lrpydVQlig~l~l~~G~Iaem~TGeGKTLta~Lpa~l~aL~---------g~~V~VVTpn~yLA~Rdae~m~~l~~~LG 139 (762)
T TIGR03714 69 MFPYDVQVLGAIVLHQGNIAEMKTGEGKTLTATMPLYLNALT---------GKGAMLVTTNDYLAKRDAEEMGPVYEWLG 139 (762)
T ss_pred CCccHHHHHHHHHhcCCceeEecCCcchHHHHHHHHHHHhhc---------CCceEEeCCCHHHHHHHHHHHHHHHhhcC
Confidence 566666666666666668999999999999999998766653 55799999999999999999999998776
Q ss_pred CcceEEEeCCC---chHHHHHHHhcCCcEEEECchhH-HHhhhcc-----CCcccccceEEEEecchhhhhcC-------
Q psy15524 495 WIVPSWLTGGE---KMKSEKARIRKGISILVATPGRL-LDHCKHT-----ETLKFSKVEHLVLDEADRILDQG------- 558 (930)
Q Consensus 495 ~~~~~~~~gg~---~~~~~~~~~~~~~~Ilv~Tp~rl-~~~l~~~-----~~~~~~~l~~lVlDEah~l~~~g------- 558 (930)
.. +++..++. ....+.++...+++|+|+||++| .+.++.. ....++.+.++|+||||.++-..
T Consensus 140 Ls-v~~~~~~s~~~~~~~~~rr~~y~~dIvygTp~~LgfDyLrD~l~~~~~~~~~r~l~~~IVDEaDsILiDeartplii 218 (762)
T TIGR03714 140 LT-VSLGVVDDPDEEYDANEKRKIYNSDIVYTTNSALGFDYLIDNLASNKEGKFLRPFNYVIVDEVDSVLLDSAQTPLVI 218 (762)
T ss_pred Cc-EEEEECCCCccccCHHHHHHhCCCCEEEECchhhhhhHHHHHhhcchhhcccccCcEEEEecHhhHhhccCcCCeee
Confidence 54 44444441 23344455557899999999999 5555321 23457889999999999986211
Q ss_pred ---------cHHHHHHHHHHHhhc-----CccceEEEEccccCHHHHHHH-----------------------hh-hcCC
Q psy15524 559 ---------YERDIAEFLEILKKQ-----KPQFQSILLSATLTPAVQRLA-----------------------GM-TLQN 600 (930)
Q Consensus 559 ---------~~~~l~~i~~~l~~~-----~~~~q~vl~SAT~~~~~~~l~-----------------------~~-~~~~ 600 (930)
+......++..|... ....+.+.+|..-...++.+. .. +.++
T Consensus 219 sg~~~~~~~~y~~~~~~v~~l~~~~dy~~d~~~~~v~lt~~G~~~~e~~~~~~~l~~~~~~~~~~~i~~al~A~~~~~~d 298 (762)
T TIGR03714 219 SGAPRVQSNLYHIADTFVRTLKEDVDYIFKKDKKEVWLTDKGIEKAEQYFKIDNLYSEEYFELVRHINLALRAHYLFKRN 298 (762)
T ss_pred eCCCccchHHHHHHHHHHHhcCCCCCeEEEcCCCeeeecHhHHHHHHHHcCCCccCChhhHHHHHHHHHHHHHHHHHhcC
Confidence 222333444444321 012233444322111111110 00 0111
Q ss_pred CEEEE-------ccCC---------------------------------------------------CCc----------
Q psy15524 601 PIQID-------AADS---------------------------------------------------TDI---------- 612 (930)
Q Consensus 601 ~~~i~-------~~~~---------------------------------------------------~~~---------- 612 (930)
-.++- +... .-.
T Consensus 299 ~dYiV~~~~v~ivD~~TGr~~~gr~~~~GLhQaieaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~~~~~Ef~~ 378 (762)
T TIGR03714 299 KDYVVTNGEVVLLDRITGRLLEGTKLQSGIHQAIEAKEHVELSKETRAMASITYQNLFKMFNKLSGMTGTGKVAEKEFIE 378 (762)
T ss_pred CceEEECCEEEEEECCCCcCCCCCCcchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHhhCchhcccCCCChhHHHHHHH
Confidence 11100 0000 000
Q ss_pred ccCccceecCCCceE------EEEEcCchhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCCce
Q psy15524 613 HNTTDSLVIPDSLKQ------HFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIA 686 (930)
Q Consensus 613 ~~~~~~~~~~~~~~~------~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~ 686 (930)
-.......+|..... ..+......|..++...+..... .+.++||||+|++.++.++..|.+. |++
T Consensus 379 iY~l~v~~IPt~kp~~r~d~~d~i~~~~~~K~~ai~~~i~~~~~-----~~~pvLIft~s~~~se~ls~~L~~~---gi~ 450 (762)
T TIGR03714 379 TYSLSVVKIPTNKPIIRIDYPDKIYATLPEKLMATLEDVKEYHE-----TGQPVLLITGSVEMSEIYSELLLRE---GIP 450 (762)
T ss_pred HhCCCEEEcCCCCCeeeeeCCCeEEECHHHHHHHHHHHHHHHhh-----CCCCEEEEECcHHHHHHHHHHHHHC---CCC
Confidence 000111233332221 13455667788888887765422 2679999999999999999999875 889
Q ss_pred EEEecCCCCHHHHHHHHHHhhcCCCcEEEeccccccccCCC---------CccEEEEecCCCChhhHHhhhcccccCCCC
Q psy15524 687 FFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLP---------LVDWIVQYTAPSSSTDYVHRVGRTARVGHE 757 (930)
Q Consensus 687 ~~~lhg~~~~~~R~~v~~~F~~~~~~vLv~T~~~~~GlDip---------~v~~VI~~~~p~s~~~y~qr~GRagR~g~~ 757 (930)
+..+||++.+.+|..+.++|+.| .|+||||+++||+||| ++.+|+++++|....+ +||+|||||.|.+
T Consensus 451 ~~~L~a~~~~~E~~ii~~ag~~g--~VlIATdmAgRGtDI~l~~~v~~~GGL~vIit~~~ps~rid-~qr~GRtGRqG~~ 527 (762)
T TIGR03714 451 HNLLNAQNAAKEAQIIAEAGQKG--AVTVATSMAGRGTDIKLGKGVAELGGLAVIGTERMENSRVD-LQLRGRSGRQGDP 527 (762)
T ss_pred EEEecCCChHHHHHHHHHcCCCC--eEEEEccccccccCCCCCccccccCCeEEEEecCCCCcHHH-HHhhhcccCCCCc
Confidence 99999999999999988888877 5999999999999999 9999999999998777 9999999999999
Q ss_pred ceEEEEeCcccHH
Q psy15524 758 GSSLLFLIPSEVK 770 (930)
Q Consensus 758 g~~~~~~~~~e~~ 770 (930)
|.++.|++.+|.-
T Consensus 528 G~s~~~is~eD~l 540 (762)
T TIGR03714 528 GSSQFFVSLEDDL 540 (762)
T ss_pred eeEEEEEccchhh
Confidence 9999999986653
|
Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii. |
| >PHA02653 RNA helicase NPH-II; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-37 Score=354.26 Aligned_cols=316 Identities=17% Similarity=0.164 Sum_probs=229.2
Q ss_pred HHHHHhHHhhhcCCcEEEEccCCCchhHH---------hhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHHH
Q psy15524 417 TVQQLSIQPILDGGDVLVRSQTGSGKTLA---------YAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFT 487 (930)
Q Consensus 417 ~iQ~~~i~~il~~~d~lv~a~TGsGKTl~---------~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~ 487 (930)
.+|+++++.+++|+|+++.|+||||||.+ |++|.+..+....+ ...+..++|++||||||.|+...+.
T Consensus 167 ~iQ~qil~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~~---~~~~~~ilvt~PrreLa~qi~~~i~ 243 (675)
T PHA02653 167 DVQLKIFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKIDP---NFIERPIVLSLPRVALVRLHSITLL 243 (675)
T ss_pred HHHHHHHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhccc---ccCCcEEEEECcHHHHHHHHHHHHH
Confidence 46999999999999999999999999997 55555555432110 1235689999999999999999988
Q ss_pred Hhhcc--CCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhccCCcccccceEEEEecchhhhhcCcHHHHHH
Q psy15524 488 KLCKS--FTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAE 565 (930)
Q Consensus 488 ~~~~~--~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~l~~~g~~~~l~~ 565 (930)
+..+. +....+...+||... .......++.+|+++|++.. ...++++++|||||||.+...+ +.+..
T Consensus 244 ~~vg~~~~~g~~v~v~~Gg~~~-~~~~t~~k~~~Ilv~T~~L~--------l~~L~~v~~VVIDEaHEr~~~~--DllL~ 312 (675)
T PHA02653 244 KSLGFDEIDGSPISLKYGSIPD-ELINTNPKPYGLVFSTHKLT--------LNKLFDYGTVIIDEVHEHDQIG--DIIIA 312 (675)
T ss_pred HHhCccccCCceEEEEECCcch-HHhhcccCCCCEEEEeCccc--------ccccccCCEEEccccccCccch--hHHHH
Confidence 76643 233445667888652 22222234679999997621 1247889999999999988776 33333
Q ss_pred HHHHHhhcCccceEEEEccccCHHHHHHHhhhcCCCEEEEccCCCCcccCccceecCCCceEEEEEcCc----------h
Q psy15524 566 FLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPP----------K 635 (930)
Q Consensus 566 i~~~l~~~~~~~q~vl~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~ 635 (930)
++..+.. ..+|+++||||+++++..+ ..++.+|..+.+.... ...+.+.|..... .
T Consensus 313 llk~~~~--~~rq~ILmSATl~~dv~~l-~~~~~~p~~I~I~grt-----------~~pV~~~yi~~~~~~~~~~~y~~~ 378 (675)
T PHA02653 313 VARKHID--KIRSLFLMTATLEDDRDRI-KEFFPNPAFVHIPGGT-----------LFPISEVYVKNKYNPKNKRAYIEE 378 (675)
T ss_pred HHHHhhh--hcCEEEEEccCCcHhHHHH-HHHhcCCcEEEeCCCc-----------CCCeEEEEeecCcccccchhhhHH
Confidence 4333221 2359999999999888777 4677888877764321 1223444432211 1
Q ss_pred hhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHHHHHHHHHHh-hcCCCcEE
Q psy15524 636 LRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTF-RSVKSGVL 714 (930)
Q Consensus 636 ~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~v~~~F-~~~~~~vL 714 (930)
.+. .+...+.... ...++.+|||++++++++.+++.|.+.. .++.+..+||+|++. ++++++| ++|+.+||
T Consensus 379 ~k~-~~l~~L~~~~----~~~~g~iLVFlpg~~ei~~l~~~L~~~~-~~~~v~~LHG~Lsq~--eq~l~~ff~~gk~kIL 450 (675)
T PHA02653 379 EKK-NIVTALKKYT----PPKGSSGIVFVASVSQCEEYKKYLEKRL-PIYDFYIIHGKVPNI--DEILEKVYSSKNPSII 450 (675)
T ss_pred HHH-HHHHHHHHhh----cccCCcEEEEECcHHHHHHHHHHHHhhc-CCceEEeccCCcCHH--HHHHHHHhccCceeEE
Confidence 111 1222222111 1125689999999999999999998753 258899999999975 5667777 68999999
Q ss_pred EeccccccccCCCCccEEEEec---CCC---------ChhhHHhhhcccccCCCCceEEEEeCcccH
Q psy15524 715 ICTDVAARGLDLPLVDWIVQYT---APS---------SSTDYVHRVGRTARVGHEGSSLLFLIPSEV 769 (930)
Q Consensus 715 v~T~~~~~GlDip~v~~VI~~~---~p~---------s~~~y~qr~GRagR~g~~g~~~~~~~~~e~ 769 (930)
||||+++||+|+|+|++||++| .|. |.++|+||+|||||. ++|.|+.|+++++.
T Consensus 451 VATdIAERGIDIp~V~~VID~G~~k~p~~~~g~~~~iSkasa~QRaGRAGR~-~~G~c~rLyt~~~~ 516 (675)
T PHA02653 451 ISTPYLESSVTIRNATHVYDTGRVYVPEPFGGKEMFISKSMRTQRKGRVGRV-SPGTYVYFYDLDLL 516 (675)
T ss_pred eccChhhccccccCeeEEEECCCccCCCcccCcccccCHHHHHHhccCcCCC-CCCeEEEEECHHHh
Confidence 9999999999999999999998 565 888999999999999 79999999998875
|
|
| >KOG0348|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-39 Score=335.46 Aligned_cols=280 Identities=51% Similarity=0.793 Sum_probs=242.5
Q ss_pred CCCccCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHH
Q psy15524 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKL 80 (930)
Q Consensus 1 ~g~~~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~ 80 (930)
|++..||.+|+++||.+++|+|++|.++||||||++|++|+++.+....++..+..|+++|||+||||||.|+++.++++
T Consensus 155 m~i~~pTsVQkq~IP~lL~grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~ki~Rs~G~~ALVivPTREL~~Q~y~~~qKL 234 (708)
T KOG0348|consen 155 MKISAPTSVQKQAIPVLLEGRDALVRAQTGSGKTLAYLLPIVQSLQAMEPKIQRSDGPYALVIVPTRELALQIYETVQKL 234 (708)
T ss_pred hccCccchHhhcchhhhhcCcceEEEcCCCCcccHHHHHHHHHHHHhcCccccccCCceEEEEechHHHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999998888889999999999999999999999999
Q ss_pred hhhcCCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCcHHHHHHHHHH
Q psy15524 81 CKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEI 160 (930)
Q Consensus 81 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~~~~~~~i~~~ 160 (930)
...+.|+..+.+.||+..+....++++++.|||+||+||++++.+...+.+.++++||+||+|++++-||+.++..|+..
T Consensus 235 l~~~hWIVPg~lmGGEkkKSEKARLRKGiNILIgTPGRLvDHLknT~~i~~s~LRwlVlDEaDrlleLGfekdit~Il~~ 314 (708)
T KOG0348|consen 235 LKPFHWIVPGVLMGGEKKKSEKARLRKGINILIGTPGRLVDHLKNTKSIKFSRLRWLVLDEADRLLELGFEKDITQILKA 314 (708)
T ss_pred hcCceEEeeceeecccccccHHHHHhcCceEEEcCchHHHHHHhccchheeeeeeEEEecchhHHHhccchhhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HhhcCCCceEEEEEeecCCCccccccccccccccccchhhhhhhhhhhccchhhHHHHHHHHhhcCcCceEEEEecccch
Q psy15524 161 LKKQKPQFQSILLSATLTPATCWCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLTP 240 (930)
Q Consensus 161 l~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~de~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~sat~~~ 240 (930)
+...... ....+..+..+|.++.|||++.
T Consensus 315 v~~~~~~---------------------------------------------------e~~~~~lp~q~q~mLlSATLtd 343 (708)
T KOG0348|consen 315 VHSIQNA---------------------------------------------------ECKDPKLPHQLQNMLLSATLTD 343 (708)
T ss_pred Hhhccch---------------------------------------------------hcccccccHHHHhHhhhhhhHH
Confidence 8542200 0000111223489999999999
Q ss_pred HHHHhhhccccCCeeeccCCccccc----------------CCCcccccCCCceeEEEEcCcchhHHHHHHHHhhhcccc
Q psy15524 241 AVQRLAGMTLQNPIQIDAADSTDIH----------------NTTDSLVIPDSLKQHFIVTPPKLRLVALASFILGKCQNV 304 (930)
Q Consensus 241 ~~~~l~~~~l~~~~~i~~~~~~~~~----------------~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~ 304 (930)
.+.+|++..+.+|++|..+.+.+.. ..-+.+.+|+.+.|+|.++|.+-++.+|..+|.+.++
T Consensus 344 ~V~rLa~~sLkDpv~I~ld~s~~~~~p~~~a~~ev~~~~~~~~l~~~~iPeqL~qry~vVPpKLRLV~Laa~L~~~~k-- 421 (708)
T KOG0348|consen 344 GVNRLADLSLKDPVYISLDKSHSQLNPKDKAVQEVDDGPAGDKLDSFAIPEQLLQRYTVVPPKLRLVALAALLLNKVK-- 421 (708)
T ss_pred HHHHHhhccccCceeeeccchhhhcCcchhhhhhcCCcccccccccccCcHHhhhceEecCCchhHHHHHHHHHHHhh--
Confidence 9999999999999999733221110 0123478999999999999999999999999977544
Q ss_pred ccCCcceEEEEEecccchhhhHHHHhhhhh
Q psy15524 305 NEDEESKMLVFMATQDMADYHTELLSTKKK 334 (930)
Q Consensus 305 ~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~ 334 (930)
.....++|||.++.+.++.-+++++..-.
T Consensus 422 -~~~~qk~iVF~S~~d~VeFHy~lf~~~l~ 450 (708)
T KOG0348|consen 422 -FEEKQKMIVFFSCSDSVEFHYSLFSEALL 450 (708)
T ss_pred -hhhhceeEEEEechhHHHHHHHHHHhhhh
Confidence 33445999999999999999999986543
|
|
| >KOG0331|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-38 Score=346.32 Aligned_cols=257 Identities=33% Similarity=0.495 Sum_probs=228.2
Q ss_pred CCCccCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHH
Q psy15524 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKL 80 (930)
Q Consensus 1 ~g~~~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~ 80 (930)
.||+.|||+|.+.||.+++|+|++.+|.||||||++|++|++.++..........+++.+|||+||||||.|+.+.+.++
T Consensus 109 ~g~~~PtpIQaq~wp~~l~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~vLVL~PTRELA~QV~~~~~~~ 188 (519)
T KOG0331|consen 109 QGFEKPTPIQAQGWPIALSGRDLVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPIVLVLAPTRELAVQVQAEAREF 188 (519)
T ss_pred cCCCCCchhhhcccceeccCCceEEEeccCCcchhhhhhHHHHHHHhccccccCCCCCeEEEEcCcHHHHHHHHHHHHHH
Confidence 38999999999999999999999999999999999999999999987544445567899999999999999999999999
Q ss_pred hhhcCCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCcHHHHHHHHHH
Q psy15524 81 CKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEI 160 (930)
Q Consensus 81 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~~~~~~~i~~~ 160 (930)
+..+. +...|++||.....|...+.++++|+|+||+||++++.. +.+.++++.|+|+||||+|++.||+++++.|++.
T Consensus 189 ~~~~~-~~~~cvyGG~~~~~Q~~~l~~gvdiviaTPGRl~d~le~-g~~~l~~v~ylVLDEADrMldmGFe~qI~~Il~~ 266 (519)
T KOG0331|consen 189 GKSLR-LRSTCVYGGAPKGPQLRDLERGVDVVIATPGRLIDLLEE-GSLNLSRVTYLVLDEADRMLDMGFEPQIRKILSQ 266 (519)
T ss_pred cCCCC-ccEEEEeCCCCccHHHHHHhcCCcEEEeCChHHHHHHHc-CCccccceeEEEeccHHhhhccccHHHHHHHHHh
Confidence 98766 779999999999999999999999999999999999987 7889999999999999999999999999999987
Q ss_pred HhhcCCCceEEEEEeecCCCccccccccccccccccchhhhhhhhhhhccchhhHHHHHHHHhhcCcCceEEEEecccch
Q psy15524 161 LKKQKPQFQSILLSATLTPATCWCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLTP 240 (930)
Q Consensus 161 l~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~de~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~sat~~~ 240 (930)
++.. .+|+++||||||.
T Consensus 267 i~~~---------------------------------------------------------------~rQtlm~saTwp~ 283 (519)
T KOG0331|consen 267 IPRP---------------------------------------------------------------DRQTLMFSATWPK 283 (519)
T ss_pred cCCC---------------------------------------------------------------cccEEEEeeeccH
Confidence 7322 1299999999999
Q ss_pred HHHHhhhccccCCeeeccCCcccccCCCcccccCCCceeEEEEcCcchhHHHHHHHHhhhccccccCCcceEEEEEeccc
Q psy15524 241 AVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQD 320 (930)
Q Consensus 241 ~~~~l~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~iVF~~s~~ 320 (930)
.++.++..++.+|..+.+.... .+....++.|.+..|+...|...|..+|... ....++++||||+|++
T Consensus 284 ~v~~lA~~fl~~~~~i~ig~~~-------~~~a~~~i~qive~~~~~~K~~~l~~lL~~~----~~~~~~KvIIFc~tkr 352 (519)
T KOG0331|consen 284 EVRQLAEDFLNNPIQINVGNKK-------ELKANHNIRQIVEVCDETAKLRKLGKLLEDI----SSDSEGKVIIFCETKR 352 (519)
T ss_pred HHHHHHHHHhcCceEEEecchh-------hhhhhcchhhhhhhcCHHHHHHHHHHHHHHH----hccCCCcEEEEecchh
Confidence 9999999999999988776542 1233567899999999888999998888653 2456789999999999
Q ss_pred chhhhHHHHhhhh
Q psy15524 321 MADYHTELLSTKK 333 (930)
Q Consensus 321 ~~~~l~~~L~~~~ 333 (930)
.|+.++..|+..+
T Consensus 353 ~~~~l~~~l~~~~ 365 (519)
T KOG0331|consen 353 TCDELARNLRRKG 365 (519)
T ss_pred hHHHHHHHHHhcC
Confidence 9999999998765
|
|
| >PRK12898 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-37 Score=350.14 Aligned_cols=334 Identities=19% Similarity=0.200 Sum_probs=247.0
Q ss_pred HHHHHHhcCCCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHH
Q psy15524 402 MKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQ 481 (930)
Q Consensus 402 ~~~~l~~~~~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q 481 (930)
+.++....+|+ .|+++|..++|.++.|+ |++|+||+|||++|.+|++..... |..++|++||++||.|
T Consensus 92 ~rEa~~R~lg~-~p~~VQ~~~~~~ll~G~--Iae~~TGeGKTla~~lp~~~~al~---------G~~v~VvTptreLA~q 159 (656)
T PRK12898 92 VREASGRVLGQ-RHFDVQLMGGLALLSGR--LAEMQTGEGKTLTATLPAGTAALA---------GLPVHVITVNDYLAER 159 (656)
T ss_pred HHHHHHHHhCC-CCChHHHHHHHHHhCCC--eeeeeCCCCcHHHHHHHHHHHhhc---------CCeEEEEcCcHHHHHH
Confidence 33444445565 68899999999999999 999999999999999999987643 7889999999999999
Q ss_pred HHHHHHHhhccCCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhH-HHhhhccC------------------------
Q psy15524 482 TLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRL-LDHCKHTE------------------------ 536 (930)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl-~~~l~~~~------------------------ 536 (930)
.++.+.+++..++ +.+++++||.+. +.++...+++|+|+|++.+ .|.|+..-
T Consensus 160 dae~~~~l~~~lG-lsv~~i~gg~~~--~~r~~~y~~dIvygT~~e~~FDyLrd~~~~~~~~~~~~~~~~~l~~~~~~~~ 236 (656)
T PRK12898 160 DAELMRPLYEALG-LTVGCVVEDQSP--DERRAAYGADITYCTNKELVFDYLRDRLALGQRASDARLALESLHGRSSRST 236 (656)
T ss_pred HHHHHHHHHhhcC-CEEEEEeCCCCH--HHHHHHcCCCEEEECCCchhhhhccccccccccccchhhhhhhhccccCchh
Confidence 9999999998765 567788888653 4555667899999999887 55554321
Q ss_pred CcccccceEEEEecchhhh-h-----------------cCcHHHHHHHHHHHhhc-----Cc------------------
Q psy15524 537 TLKFSKVEHLVLDEADRIL-D-----------------QGYERDIAEFLEILKKQ-----KP------------------ 575 (930)
Q Consensus 537 ~~~~~~l~~lVlDEah~l~-~-----------------~g~~~~l~~i~~~l~~~-----~~------------------ 575 (930)
....+.+.+.|+||+|.++ | ..+......+...+... ..
T Consensus 237 ~~v~r~~~~aIvDEvDSiLiDeartpliis~~~~~~~~~~~y~~~~~~~~~l~~~~~y~~d~~~~~v~lt~~g~~~~e~~ 316 (656)
T PRK12898 237 QLLLRGLHFAIVDEADSVLIDEARTPLIISAPAKEADEAEVYRQALELAAQLKEGEDYTIDAAEKRIELTEAGRARIAEL 316 (656)
T ss_pred hhcccccceeEeecccceeeccCCCceEEECCCCCCchhHHHHHHHHHHHhcCCCCceEEECCCCeEEEcHHHHHHHHHH
Confidence 1224668999999999875 0 01111111221111100 00
Q ss_pred --------------------------------------------------------------------------------
Q psy15524 576 -------------------------------------------------------------------------------- 575 (930)
Q Consensus 576 -------------------------------------------------------------------------------- 575 (930)
T Consensus 317 ~~~l~~~~~~~~~~~~~i~~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~w~~GLhQaieaKE~v~i~~e~~t~ 396 (656)
T PRK12898 317 AESLPPAWRGAVRREELVRQALSALHLFRRDEHYIVRDGKVVIVDEFTGRVMPDRSWEDGLHQMIEAKEGCELTDPRETL 396 (656)
T ss_pred hCcchhhcccchHHHHHHHHHHHHHHHHhcCCceEEECCeEEEEECCCCeECCCCCcChHHHHHHHHhcCCCCCcCceee
Confidence
Q ss_pred -----------cceEEEEccccCHHHHHHHhhhcCCCEEEEccCCCCcccCccceecCCCceEEEEEcCchhhHHHHHHH
Q psy15524 576 -----------QFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALASF 644 (930)
Q Consensus 576 -----------~~q~vl~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 644 (930)
-.+..+||||.+....++...+..+++.|...... . ....+.++.++...|...+...
T Consensus 397 a~It~q~~Fr~Y~kl~GmTGTa~~~~~El~~~y~l~vv~IPt~kp~----------~-r~~~~~~v~~t~~~K~~aL~~~ 465 (656)
T PRK12898 397 ARITYQRFFRRYLRLAGMTGTAREVAGELWSVYGLPVVRIPTNRPS----------Q-RRHLPDEVFLTAAAKWAAVAAR 465 (656)
T ss_pred eeehHHHHHHhhHHHhcccCcChHHHHHHHHHHCCCeEEeCCCCCc----------c-ceecCCEEEeCHHHHHHHHHHH
Confidence 12455667777666666666666666555443321 0 1122345667777888888888
Q ss_pred HHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHHHHHHHHHHhhcCCCcEEEecccccccc
Q psy15524 645 ILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGL 724 (930)
Q Consensus 645 l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~v~~~F~~~~~~vLv~T~~~~~Gl 724 (930)
+..... .+.++||||+|++.++.+++.|.+. |+.+..+||++.+.++. +..|+.+...|+||||+++||+
T Consensus 466 i~~~~~-----~~~pvLIft~t~~~se~L~~~L~~~---gi~~~~Lhg~~~~rE~~--ii~~ag~~g~VlVATdmAgRGt 535 (656)
T PRK12898 466 VRELHA-----QGRPVLVGTRSVAASERLSALLREA---GLPHQVLNAKQDAEEAA--IVARAGQRGRITVATNMAGRGT 535 (656)
T ss_pred HHHHHh-----cCCCEEEEeCcHHHHHHHHHHHHHC---CCCEEEeeCCcHHHHHH--HHHHcCCCCcEEEEccchhccc
Confidence 765321 1568999999999999999999885 89999999997655544 4455555556999999999999
Q ss_pred CCC---Ccc-----EEEEecCCCChhhHHhhhcccccCCCCceEEEEeCcccHHH
Q psy15524 725 DLP---LVD-----WIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPSEVKL 771 (930)
Q Consensus 725 Dip---~v~-----~VI~~~~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~e~~~ 771 (930)
||+ +|. +||+++.|.+...|+||+|||||.|.+|.++.|++.+|.-+
T Consensus 536 DI~l~~~V~~~GGLhVI~~d~P~s~r~y~hr~GRTGRqG~~G~s~~~is~eD~l~ 590 (656)
T PRK12898 536 DIKLEPGVAARGGLHVILTERHDSARIDRQLAGRCGRQGDPGSYEAILSLEDDLL 590 (656)
T ss_pred CcCCccchhhcCCCEEEEcCCCCCHHHHHHhcccccCCCCCeEEEEEechhHHHH
Confidence 999 776 99999999999999999999999999999999999866533
|
|
| >TIGR00963 secA preprotein translocase, SecA subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-36 Score=342.81 Aligned_cols=344 Identities=19% Similarity=0.205 Sum_probs=238.4
Q ss_pred HHHHHHhcCCCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHH
Q psy15524 402 MKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQ 481 (930)
Q Consensus 402 ~~~~l~~~~~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q 481 (930)
+.++..+.+|+ .|+++|..+.+.++.|+ +++++||+|||++|.+|++-.... |..+.|++||++||.|
T Consensus 45 vrEa~~R~lg~-~p~~vQlig~~~l~~G~--Iaem~TGeGKTLva~lpa~l~aL~---------G~~V~VvTpt~~LA~q 112 (745)
T TIGR00963 45 VREASKRVLGM-RPFDVQLIGGIALHKGK--IAEMKTGEGKTLTATLPAYLNALT---------GKGVHVVTVNDYLAQR 112 (745)
T ss_pred HHHHHHHHhCC-CccchHHhhhhhhcCCc--eeeecCCCccHHHHHHHHHHHHHh---------CCCEEEEcCCHHHHHH
Confidence 33444455665 67888888888877666 999999999999999999644443 5569999999999999
Q ss_pred HHHHHHHhhccCCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhH-HHhhhccC-----CcccccceEEEEecchhhh
Q psy15524 482 TLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRL-LDHCKHTE-----TLKFSKVEHLVLDEADRIL 555 (930)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl-~~~l~~~~-----~~~~~~l~~lVlDEah~l~ 555 (930)
.++.+.+++..++ +.+++++||.+... ++....++|+|+||++| .++++... ...++.+.++|+||+|+++
T Consensus 113 dae~~~~l~~~LG-Lsv~~i~g~~~~~~--r~~~y~~dIvyGT~~rlgfDyLrd~~~~~~~~~~~r~l~~aIIDEaDs~L 189 (745)
T TIGR00963 113 DAEWMGQVYRFLG-LSVGLILSGMSPEE--RREAYACDITYGTNNELGFDYLRDNMAHSKEEKVQRPFHFAIIDEVDSIL 189 (745)
T ss_pred HHHHHHHHhccCC-CeEEEEeCCCCHHH--HHHhcCCCEEEECCCchhhHHHhcccccchhhhhccccceeEeecHHHHh
Confidence 9999999998766 56778888877543 33345689999999999 88887642 3467899999999999987
Q ss_pred h-cC---------------cHHHHHHHHHHHhhc-----CccceEEEEccccCHHHHHH-----------------Hh--
Q psy15524 556 D-QG---------------YERDIAEFLEILKKQ-----KPQFQSILLSATLTPAVQRL-----------------AG-- 595 (930)
Q Consensus 556 ~-~g---------------~~~~l~~i~~~l~~~-----~~~~q~vl~SAT~~~~~~~l-----------------~~-- 595 (930)
- .. .......|.+.|... ....+.+.++..=-..++.+ ..
T Consensus 190 IDeaRtpLiisg~~~~~~~ly~~a~~i~r~L~~~~dy~~de~~k~v~Lt~~G~~~~e~~~~~~~ly~~~~~~~~~~i~~A 269 (745)
T TIGR00963 190 IDEARTPLIISGPAEKSTELYLQANRFAKALEKEVHYEVDEKNRAVLLTEKGIKKAEDLLGVDNLYDLENSPLIHYINNA 269 (745)
T ss_pred HHhhhhHHhhcCCCCCchHHHHHHHHHHHhhccCCCeEEecCCCceeECHHHHHHHHHHcCCccccChhhhHHHHHHHHH
Confidence 3 11 111222333333211 01122333332100001110 00
Q ss_pred ----h-hcCCCEEE-------EccCC---------------------------------------------------CC-
Q psy15524 596 ----M-TLQNPIQI-------DAADS---------------------------------------------------TD- 611 (930)
Q Consensus 596 ----~-~~~~~~~i-------~~~~~---------------------------------------------------~~- 611 (930)
. +..+-.++ -+... .-
T Consensus 270 l~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~ws~GLhQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGT 349 (745)
T TIGR00963 270 LKAKELFEKDVDYIVRDGEVVIVDEFTGRIMEGRRWSDGLHQAIEAKEGVEIQNENQTLATITYQNFFRLYEKLSGMTGT 349 (745)
T ss_pred HHHHHHHhcCCcEEEECCEEEEEECCCCcCCCCCccchHHHHHHHHhcCCCcCCCceeeeeeeHHHHHhhCchhhccCCC
Confidence 0 00111010 00000 00
Q ss_pred c---------ccCccceecCCCceEE------EEEcCchhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHH
Q psy15524 612 I---------HNTTDSLVIPDSLKQH------FIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTEL 676 (930)
Q Consensus 612 ~---------~~~~~~~~~~~~~~~~------~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~ 676 (930)
. -...+...+|...... .+......|..++...+..... .+.++||||+|++.++.+++.
T Consensus 350 a~te~~E~~~iY~l~vv~IPtnkp~~R~d~~d~i~~t~~~k~~ai~~~i~~~~~-----~grpvLV~t~si~~se~ls~~ 424 (745)
T TIGR00963 350 AKTEEEEFEKIYNLEVVVVPTNRPVIRKDLSDLVYKTEEEKWKAVVDEIKERHA-----KGQPVLVGTTSVEKSELLSNL 424 (745)
T ss_pred cHHHHHHHHHHhCCCEEEeCCCCCeeeeeCCCeEEcCHHHHHHHHHHHHHHHHh-----cCCCEEEEeCcHHHHHHHHHH
Confidence 0 0001122333332221 1233445677777776654322 278999999999999999999
Q ss_pred HhhhcCCCceEEEecCCCCHHHHHHHHHHhhcCCCcEEEeccccccccCCCC-------ccEEEEecCCCChhhHHhhhc
Q psy15524 677 LSTVLGENIAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPL-------VDWIVQYTAPSSSTDYVHRVG 749 (930)
Q Consensus 677 l~~~~~~~~~~~~lhg~~~~~~R~~v~~~F~~~~~~vLv~T~~~~~GlDip~-------v~~VI~~~~p~s~~~y~qr~G 749 (930)
|.+. |+++..+||+ +.+|+..+.+|+.+...|+|||++++||+||+. ..+||+++.|.|...|.||+|
T Consensus 425 L~~~---gi~~~~Lna~--q~~rEa~ii~~ag~~g~VtIATnmAgRGtDI~l~~V~~~GGl~VI~t~~p~s~ri~~q~~G 499 (745)
T TIGR00963 425 LKER---GIPHNVLNAK--NHEREAEIIAQAGRKGAVTIATNMAGRGTDIKLEEVKELGGLYVIGTERHESRRIDNQLRG 499 (745)
T ss_pred HHHc---CCCeEEeeCC--hHHHHHHHHHhcCCCceEEEEeccccCCcCCCccchhhcCCcEEEecCCCCcHHHHHHHhc
Confidence 9885 8888999998 889999999999999999999999999999988 559999999999999999999
Q ss_pred ccccCCCCceEEEEeCcccHH
Q psy15524 750 RTARVGHEGSSLLFLIPSEVK 770 (930)
Q Consensus 750 RagR~g~~g~~~~~~~~~e~~ 770 (930)
||||.|.+|.+..|++.++.-
T Consensus 500 RtGRqG~~G~s~~~ls~eD~l 520 (745)
T TIGR00963 500 RSGRQGDPGSSRFFLSLEDNL 520 (745)
T ss_pred cccCCCCCcceEEEEeccHHH
Confidence 999999999999999987653
|
The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus. |
| >TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-36 Score=360.02 Aligned_cols=310 Identities=17% Similarity=0.224 Sum_probs=231.2
Q ss_pred HhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHHHHhhccCCCcceEE
Q psy15524 421 LSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSW 500 (930)
Q Consensus 421 ~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~ 500 (930)
+.+..+.++++++++|+||||||.+|.+|+++... .+.+++|+.|||++|.|+++.+.+.........+++
T Consensus 9 ~i~~~l~~~~~vIi~a~TGSGKTT~vpl~lL~~~~---------~~~~ilvlqPrR~aA~qiA~rva~~~~~~~g~~VGy 79 (819)
T TIGR01970 9 ALRDALAAHPQVVLEAPPGAGKSTAVPLALLDAPG---------IGGKIIMLEPRRLAARSAAQRLASQLGEAVGQTVGY 79 (819)
T ss_pred HHHHHHHcCCcEEEECCCCCCHHHHHHHHHHHhhc---------cCCeEEEEeCcHHHHHHHHHHHHHHhCCCcCcEEEE
Confidence 44455667889999999999999999999997652 245899999999999999999865554332334555
Q ss_pred EeCCCchHHHHHHHhcCCcEEEECchhHHHhhhccCCcccccceEEEEecch-hhhhcCcHHH-HHHHHHHHhhcCccce
Q psy15524 501 LTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEAD-RILDQGYERD-IAEFLEILKKQKPQFQ 578 (930)
Q Consensus 501 ~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah-~l~~~g~~~~-l~~i~~~l~~~~~~~q 578 (930)
.+++.+. ...+.+|+|+|||+|++++.+ ...++++++|||||+| +.++..+.-. +..+...+ +++.|
T Consensus 80 ~vr~~~~------~s~~t~I~v~T~G~Llr~l~~--d~~L~~v~~VIiDEaHER~L~~Dl~L~ll~~i~~~l---r~dlq 148 (819)
T TIGR01970 80 RVRGENK------VSRRTRLEVVTEGILTRMIQD--DPELDGVGALIFDEFHERSLDADLGLALALDVQSSL---REDLK 148 (819)
T ss_pred EEccccc------cCCCCcEEEECCcHHHHHHhh--CcccccCCEEEEeccchhhhccchHHHHHHHHHHhc---CCCce
Confidence 5555432 234578999999999998876 3468999999999999 5777655422 23333333 35789
Q ss_pred EEEEccccCHHHHHHHhhhcCCCEEEEccCCCCcccCccceecCCCceEEEEEcCchhhHH-HHHHHHHhhccCCCcCCC
Q psy15524 579 SILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLV-ALASFILGKCQNVNEDEE 657 (930)
Q Consensus 579 ~vl~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~l~~~~~~~~~~~~ 657 (930)
+++||||++... ...++.++..+...+.. ..+.+.|.......++. .+...+...... ..
T Consensus 149 lIlmSATl~~~~---l~~~l~~~~vI~~~gr~------------~pVe~~y~~~~~~~~~~~~v~~~l~~~l~~----~~ 209 (819)
T TIGR01970 149 ILAMSATLDGER---LSSLLPDAPVVESEGRS------------FPVEIRYLPLRGDQRLEDAVSRAVEHALAS----ET 209 (819)
T ss_pred EEEEeCCCCHHH---HHHHcCCCcEEEecCcc------------eeeeeEEeecchhhhHHHHHHHHHHHHHHh----cC
Confidence 999999998753 23455555444432211 12445555554444332 122222222211 15
Q ss_pred ceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHHHHHHHHHHhhcCCCcEEEeccccccccCCCCccEEEEecC
Q psy15524 658 SKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTA 737 (930)
Q Consensus 658 ~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~v~~~F~~~~~~vLv~T~~~~~GlDip~v~~VI~~~~ 737 (930)
+.+|||++++++++.+++.|.+.+..++.+..+||+|++++|..+++.|++|+.+||||||++++|||||+|++||+++.
T Consensus 210 g~iLVFlpg~~eI~~l~~~L~~~~~~~~~v~pLHg~L~~~eq~~~~~~~~~G~rkVlVATnIAErgItIp~V~~VID~Gl 289 (819)
T TIGR01970 210 GSILVFLPGQAEIRRVQEQLAERLDSDVLICPLYGELSLAAQDRAIKPDPQGRRKVVLATNIAETSLTIEGIRVVIDSGL 289 (819)
T ss_pred CcEEEEECCHHHHHHHHHHHHhhcCCCcEEEEecCCCCHHHHHHHHhhcccCCeEEEEecchHhhcccccCceEEEEcCc
Confidence 78999999999999999999875545789999999999999999999999999999999999999999999999999998
Q ss_pred CC------------------ChhhHHhhhcccccCCCCceEEEEeCcccHH
Q psy15524 738 PS------------------SSTDYVHRVGRTARVGHEGSSLLFLIPSEVK 770 (930)
Q Consensus 738 p~------------------s~~~y~qr~GRagR~g~~g~~~~~~~~~e~~ 770 (930)
|. |..+|.||.|||||. .+|.|+.++++.+..
T Consensus 290 ~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRAGR~-~~G~cyrL~t~~~~~ 339 (819)
T TIGR01970 290 ARVARFDPKTGITRLETVRISQASATQRAGRAGRL-EPGVCYRLWSEEQHQ 339 (819)
T ss_pred ccccccccccCCceeeEEEECHHHHHhhhhhcCCC-CCCEEEEeCCHHHHH
Confidence 74 334689999999999 799999999877653
|
This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing. |
| >PRK09401 reverse gyrase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-36 Score=373.04 Aligned_cols=306 Identities=21% Similarity=0.270 Sum_probs=231.6
Q ss_pred HHHHhcCCCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHH
Q psy15524 404 KNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTL 483 (930)
Q Consensus 404 ~~l~~~~~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~ 483 (930)
+.+.+.+|+ .|+++|..++|.++.|+|++++||||||||. |.+|+...+.. .+.+++||+|||+|+.|++
T Consensus 71 ~~f~~~~G~-~pt~iQ~~~i~~il~g~dv~i~ApTGsGKT~-f~l~~~~~l~~--------~g~~alIL~PTreLa~Qi~ 140 (1176)
T PRK09401 71 KFFKKKTGS-KPWSLQRTWAKRLLLGESFAIIAPTGVGKTT-FGLVMSLYLAK--------KGKKSYIIFPTRLLVEQVV 140 (1176)
T ss_pred HHHHHhcCC-CCcHHHHHHHHHHHCCCcEEEEcCCCCCHHH-HHHHHHHHHHh--------cCCeEEEEeccHHHHHHHH
Confidence 345556788 8999999999999999999999999999996 56666554432 3788999999999999999
Q ss_pred HHHHHhhccCCCcceEEEeCCCch-----HHHHHHHh-cCCcEEEECchhHHHhhhccCCcccccceEEEEecchhhhh-
Q psy15524 484 EIFTKLCKSFTWIVPSWLTGGEKM-----KSEKARIR-KGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILD- 556 (930)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~~gg~~~-----~~~~~~~~-~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~l~~- 556 (930)
+.+++++...+.. +..+.|+... ......+. .+++|+|+|||+|.+++. .+...+++++|+||||++++
T Consensus 141 ~~l~~l~~~~~~~-~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~---~l~~~~~~~lVvDEaD~~L~~ 216 (1176)
T PRK09401 141 EKLEKFGEKVGCG-VKILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFD---ELPKKKFDFVFVDDVDAVLKS 216 (1176)
T ss_pred HHHHHHhhhcCce-EEEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHH---hccccccCEEEEEChHHhhhc
Confidence 9999998765533 3444544331 22233344 358999999999999876 24556799999999999996
Q ss_pred ----------cCcH-HHHHHHHHHHhhc---------------------CccceEEEEccccCHH-HHHHHhhhcCCCEE
Q psy15524 557 ----------QGYE-RDIAEFLEILKKQ---------------------KPQFQSILLSATLTPA-VQRLAGMTLQNPIQ 603 (930)
Q Consensus 557 ----------~g~~-~~l~~i~~~l~~~---------------------~~~~q~vl~SAT~~~~-~~~l~~~~~~~~~~ 603 (930)
+||. +.+..+++.++.. ....|++++|||+++. +.. ..+.++..
T Consensus 217 ~k~id~~l~~lGF~~~~i~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~~~~~---~l~~~ll~ 293 (1176)
T PRK09401 217 SKNIDKLLYLLGFSEEDIEKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPRGNRV---KLFRELLG 293 (1176)
T ss_pred ccchhhHHHhCCCCHHHHHHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCccchHH---HHhhccce
Confidence 7884 6777777666531 1167999999999874 332 12234433
Q ss_pred EEccCCCCcccCccceecCCCceEEEEEcCchhhHHHHHHHHHhhccCCCcCCCceEEEEecchhh---HHHHHHHHhhh
Q psy15524 604 IDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDM---ADYHTELLSTV 680 (930)
Q Consensus 604 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~---~~~~~~~l~~~ 680 (930)
+.+.... .....+.+.|+.++ .+...+..++... +.++||||++++. ++.+++.|...
T Consensus 294 ~~v~~~~---------~~~rnI~~~yi~~~--~k~~~L~~ll~~l--------~~~~LIFv~t~~~~~~ae~l~~~L~~~ 354 (1176)
T PRK09401 294 FEVGSPV---------FYLRNIVDSYIVDE--DSVEKLVELVKRL--------GDGGLIFVPSDKGKEYAEELAEYLEDL 354 (1176)
T ss_pred EEecCcc---------cccCCceEEEEEcc--cHHHHHHHHHHhc--------CCCEEEEEecccChHHHHHHHHHHHHC
Confidence 4433221 12345677777665 4555566665432 4589999999887 89999888875
Q ss_pred cCCCceEEEecCCCCHHHHHHHHHHhhcCCCcEEEe----ccccccccCCCC-ccEEEEecCCC------ChhhHHhhhc
Q psy15524 681 LGENIAFFKLHGSMSQSERTEVFKTFRSVKSGVLIC----TDVAARGLDLPL-VDWIVQYTAPS------SSTDYVHRVG 749 (930)
Q Consensus 681 ~~~~~~~~~lhg~~~~~~R~~v~~~F~~~~~~vLv~----T~~~~~GlDip~-v~~VI~~~~p~------s~~~y~qr~G 749 (930)
|+.+..+||+| + ..+++|++|+.+|||| ||+++||||+|+ |++||+||+|. ..+.|.||+|
T Consensus 355 ---gi~v~~~hg~l---~--~~l~~F~~G~~~VLVatas~tdv~aRGIDiP~~IryVI~y~vP~~~~~~~~~~~~~~~~~ 426 (1176)
T PRK09401 355 ---GINAELAISGF---E--RKFEKFEEGEVDVLVGVASYYGVLVRGIDLPERIRYAIFYGVPKFKFSLEEELAPPFLLL 426 (1176)
T ss_pred ---CCcEEEEeCcH---H--HHHHHHHCCCCCEEEEecCCCCceeecCCCCcceeEEEEeCCCCEEEeccccccCHHHHH
Confidence 89999999999 2 2359999999999999 699999999999 89999999998 6788999999
Q ss_pred cccc
Q psy15524 750 RTAR 753 (930)
Q Consensus 750 RagR 753 (930)
|+..
T Consensus 427 r~~~ 430 (1176)
T PRK09401 427 RLLS 430 (1176)
T ss_pred HHHh
Confidence 9963
|
|
| >COG1204 Superfamily II helicase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-36 Score=353.80 Aligned_cols=351 Identities=23% Similarity=0.298 Sum_probs=257.6
Q ss_pred CCHHHHHHHHhcCCCCCCCHHHHHhHHhhh-cCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCH
Q psy15524 398 IHPFMKKNLNEGMNITQVTTVQQLSIQPIL-DGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTR 476 (930)
Q Consensus 398 l~~~~~~~l~~~~~~~~~~~iQ~~~i~~il-~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~Ptr 476 (930)
+++.+.+.+. ..++.++.+-|+.++...+ +++|+++++|||||||+.+++.+++.+.+ .+.++|||+|++
T Consensus 16 ~~~~v~~i~~-~~~~~el~~~qq~av~~~~~~~~N~li~aPTgsGKTlIA~lai~~~l~~--------~~~k~vYivPlk 86 (766)
T COG1204 16 LDDRVLEILK-GDGIDELFNPQQEAVEKGLLSDENVLISAPTGSGKTLIALLAILSTLLE--------GGGKVVYIVPLK 86 (766)
T ss_pred ccHHHHHHhc-cCChHHhhHHHHHHhhccccCCCcEEEEcCCCCchHHHHHHHHHHHHHh--------cCCcEEEEeChH
Confidence 5555555554 5688777777777766655 56999999999999999999999999976 267899999999
Q ss_pred HHHHHHHHHHHHhhccCCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhccCCcccccceEEEEecchhhhh
Q psy15524 477 ELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILD 556 (930)
Q Consensus 477 eLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~l~~ 556 (930)
+||.|.++.|+ .+..++ +.+...+|+.....+. ..+++|+|+||++|...+++... .+..+++||+||+|.+.+
T Consensus 87 ALa~Ek~~~~~-~~~~~G-irV~~~TgD~~~~~~~---l~~~~ViVtT~EK~Dsl~R~~~~-~~~~V~lvViDEiH~l~d 160 (766)
T COG1204 87 ALAEEKYEEFS-RLEELG-IRVGISTGDYDLDDER---LARYDVIVTTPEKLDSLTRKRPS-WIEEVDLVVIDEIHLLGD 160 (766)
T ss_pred HHHHHHHHHhh-hHHhcC-CEEEEecCCcccchhh---hccCCEEEEchHHhhHhhhcCcc-hhhcccEEEEeeeeecCC
Confidence 99999999999 333344 4667778887654432 25799999999999999988655 678999999999999998
Q ss_pred cCcHHHHHHHHHHHhhcCccceEEEEccccCHHHHHHHhhhcCCCEEEEccCCCCcccCccceecCCCceEEEEEcCchh
Q psy15524 557 QGYERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKL 636 (930)
Q Consensus 557 ~g~~~~l~~i~~~l~~~~~~~q~vl~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 636 (930)
...+..++.|+..+.......|++++|||+|+ ..+++.+.-.++........ ....+....+.+.......
T Consensus 161 ~~RG~~lE~iv~r~~~~~~~~rivgLSATlpN-~~evA~wL~a~~~~~~~rp~--------~l~~~v~~~~~~~~~~~~~ 231 (766)
T COG1204 161 RTRGPVLESIVARMRRLNELIRIVGLSATLPN-AEEVADWLNAKLVESDWRPV--------PLRRGVPYVGAFLGADGKK 231 (766)
T ss_pred cccCceehhHHHHHHhhCcceEEEEEeeecCC-HHHHHHHhCCcccccCCCCc--------ccccCCccceEEEEecCcc
Confidence 88899999999999888778999999999987 44555544433331111111 1111122233333222111
Q ss_pred ------hHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhc-----------------------------
Q psy15524 637 ------RLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVL----------------------------- 681 (930)
Q Consensus 637 ------~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~----------------------------- 681 (930)
+.......+..... .+++++|||+|+..+...+..+....
T Consensus 232 k~~~~~~~~~~~~~v~~~~~-----~~~qvLvFv~sR~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 306 (766)
T COG1204 232 KTWPLLIDNLALELVLESLA-----EGGQVLVFVHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSED 306 (766)
T ss_pred ccccccchHHHHHHHHHHHh-----cCCeEEEEEecCchHHHHHHHHHHHHhhcCChhhhhhccccccccccccccccch
Confidence 22333333333222 27899999999999988877776311
Q ss_pred -------CCCceEEEecCCCCHHHHHHHHHHhhcCCCcEEEeccccccccCCCCccEEEE----ec-----CCCChhhHH
Q psy15524 682 -------GENIAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQ----YT-----APSSSTDYV 745 (930)
Q Consensus 682 -------~~~~~~~~lhg~~~~~~R~~v~~~F~~~~~~vLv~T~~~~~GlDip~v~~VI~----~~-----~p~s~~~y~ 745 (930)
..|+. .+|++|+.++|..+++.|+.|.++|||||+++++|+|+|+-++||- |+ .+.+..+|+
T Consensus 307 ~~l~e~v~~Gva--fHhAGL~~~~R~~vE~~Fr~g~ikVlv~TpTLA~GVNLPA~~VIIk~~~~y~~~~g~~~i~~~dv~ 384 (766)
T COG1204 307 EELAELVLRGVA--FHHAGLPREDRQLVEDAFRKGKIKVLVSTPTLAAGVNLPARTVIIKDTRRYDPKGGIVDIPVLDVL 384 (766)
T ss_pred HHHHHHHHhCcc--ccccCCCHHHHHHHHHHHhcCCceEEEechHHhhhcCCcceEEEEeeeEEEcCCCCeEECchhhHh
Confidence 11444 4599999999999999999999999999999999999999888883 55 556788999
Q ss_pred hhhcccccCCCC--ceEEEEe-CcccHHHHHHHHhcC
Q psy15524 746 HRVGRTARVGHE--GSSLLFL-IPSEVKLVEELQNRR 779 (930)
Q Consensus 746 qr~GRagR~g~~--g~~~~~~-~~~e~~~~~~l~~~~ 779 (930)
||.|||||.|-+ |.++++. +..+..++.......
T Consensus 385 QM~GRAGRPg~d~~G~~~i~~~~~~~~~~~~~~~~~~ 421 (766)
T COG1204 385 QMAGRAGRPGYDDYGEAIILATSHDELEYLAELYIQS 421 (766)
T ss_pred hccCcCCCCCcCCCCcEEEEecCccchhHHHHHhhcc
Confidence 999999999975 6677777 344445555554443
|
|
| >KOG0349|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-37 Score=315.76 Aligned_cols=302 Identities=27% Similarity=0.429 Sum_probs=231.6
Q ss_pred eeEEEEccCHHHHHHHHHHHHHhhccCC--CcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhccCCcccccce
Q psy15524 467 IYAVIILPTRELALQTLEIFTKLCKSFT--WIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVE 544 (930)
Q Consensus 467 ~~~lil~PtreLa~Q~~~~~~~~~~~~~--~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~ 544 (930)
+.++|+-|+|||+.|++..++++-.... .....++.||...+.+...+..|.+|+|+||||+++.+.. ....+.+++
T Consensus 287 p~avivepsrelaEqt~N~i~~Fk~h~~np~~r~lLmiggv~~r~Q~~ql~~g~~ivvGtpgRl~~~is~-g~~~lt~cr 365 (725)
T KOG0349|consen 287 PEAVIVEPSRELAEQTHNQIEEFKMHTSNPEVRSLLMIGGVLKRTQCKQLKDGTHIVVGTPGRLLQPISK-GLVTLTHCR 365 (725)
T ss_pred cceeEecCcHHHHHHHHhhHHHHHhhcCChhhhhhhhhhhHHhHHHHHHhhcCceeeecCchhhhhhhhc-cceeeeeeE
Confidence 5679999999999999997776654332 2333467888888889999999999999999999998875 667789999
Q ss_pred EEEEecchhhhhcCcHHHHHHHHHHHhhcCc---cceEEEEccccCH-HHHHHHhhhcCCCEEEEccCCCCcccCcccee
Q psy15524 545 HLVLDEADRILDQGYERDIAEFLEILKKQKP---QFQSILLSATLTP-AVQRLAGMTLQNPIQIDAADSTDIHNTTDSLV 620 (930)
Q Consensus 545 ~lVlDEah~l~~~g~~~~l~~i~~~l~~~~~---~~q~vl~SAT~~~-~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~ 620 (930)
++|+||||.++..|+.+.+.++...++...+ ..|.+++|||+.. ++..+....+.-|..++.......
T Consensus 366 FlvlDead~lL~qgy~d~I~r~h~qip~~tsdg~rlq~~vCsatlh~feVkk~~ervmhfptwVdLkgeD~v-------- 437 (725)
T KOG0349|consen 366 FLVLDEADLLLGQGYDDKIYRFHGQIPHMTSDGFRLQSPVCSATLHIFEVKKVGERVMHFPTWVDLKGEDLV-------- 437 (725)
T ss_pred EEEecchhhhhhcccHHHHHHHhccchhhhcCCcccccceeeeEEeEEEeeehhhhhccCceeEeccccccc--------
Confidence 9999999999999999999999888876543 5789999999864 356666677777888877655322
Q ss_pred cCCCceEEEEEcCch------------------------------hhHHHHHHHHHhh-c-cCCCcCCCceEEEEecchh
Q psy15524 621 IPDSLKQHFIVTPPK------------------------------LRLVALASFILGK-C-QNVNEDEESKMLVFMATQD 668 (930)
Q Consensus 621 ~~~~~~~~~~~~~~~------------------------------~~~~~l~~~l~~~-~-~~~~~~~~~k~iVF~~s~~ 668 (930)
|+...+....+.++ .-...-..+++.. + .........++||||.|..
T Consensus 438 -petvHhvv~lv~p~~d~sw~~lr~~i~td~vh~kdn~~pg~~Spe~~s~a~kilkgEy~v~ai~~h~mdkaiifcrtk~ 516 (725)
T KOG0349|consen 438 -PETVHHVVKLVCPSVDGSWCDLRQFIETDKVHTKDNLLPGQVSPENPSSATKILKGEYGVVAIRRHAMDKAIIFCRTKQ 516 (725)
T ss_pred -chhhccceeecCCccCccHHHHhhhhccCCcccccccccccCCCCChhhhhHHhcCchhhhhhhhhccCceEEEEeccc
Confidence 12222111111110 0000111111100 0 0000112468999999999
Q ss_pred hHHHHHHHHhhhcCCCceEEEecCCCCHHHHHHHHHHhhcCCCcEEEeccccccccCCCCccEEEEecCCCChhhHHhhh
Q psy15524 669 MADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRV 748 (930)
Q Consensus 669 ~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~v~~~F~~~~~~vLv~T~~~~~GlDip~v~~VI~~~~p~s~~~y~qr~ 748 (930)
.|+.+.+++.+..+..+.+.++||+..+.+|.+.++.|+.+..+.|||||+++||+||.++-.+|+...|.+...|+||+
T Consensus 517 dcDnLer~~~qkgg~~~scvclhgDrkP~Erk~nle~Fkk~dvkflictdvaargldi~g~p~~invtlpd~k~nyvhri 596 (725)
T KOG0349|consen 517 DCDNLERMMNQKGGKHYSCVCLHGDRKPDERKANLESFKKFDVKFLICTDVAARGLDITGLPFMINVTLPDDKTNYVHRI 596 (725)
T ss_pred cchHHHHHHHHcCCccceeEEEecCCChhHHHHHHHhhhhcCeEEEEEehhhhccccccCCceEEEEecCcccchhhhhh
Confidence 99999999998877778999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCceEEEEeCcc-cHHHHHHHHhc
Q psy15524 749 GRTARVGHEGSSLLFLIPS-EVKLVEELQNR 778 (930)
Q Consensus 749 GRagR~g~~g~~~~~~~~~-e~~~~~~l~~~ 778 (930)
||.||+.+-|.++.++... |.-++.-...+
T Consensus 597 grvgraermglaislvat~~ekvwyh~c~sr 627 (725)
T KOG0349|consen 597 GRVGRAERMGLAISLVATVPEKVWYHWCKSR 627 (725)
T ss_pred hccchhhhcceeEEEeeccchheeehhhhcc
Confidence 9999999999999888753 44344444443
|
|
| >PRK14701 reverse gyrase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-36 Score=375.04 Aligned_cols=336 Identities=19% Similarity=0.252 Sum_probs=249.6
Q ss_pred HHHHHHHhcCCCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHH
Q psy15524 401 FMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELAL 480 (930)
Q Consensus 401 ~~~~~l~~~~~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~ 480 (930)
+..+.+.+.+|| +|+++|++++|.+++|+|+++.||||||||++++++++... ..|.++|||+||++|+.
T Consensus 67 ~~~~~f~~~~G~-~pt~iQ~~~i~~il~G~d~li~APTGsGKTl~~~~~al~~~---------~~g~~aLVl~PTreLa~ 136 (1638)
T PRK14701 67 EFEEFFEKITGF-EFWSIQKTWAKRILRGKSFSIVAPTGMGKSTFGAFIALFLA---------LKGKKCYIILPTTLLVK 136 (1638)
T ss_pred HHHHHHHHhhCC-CCCHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHHHHH---------hcCCeEEEEECHHHHHH
Confidence 445566666899 69999999999999999999999999999997666655432 13678999999999999
Q ss_pred HHHHHHHHhhccCCC-cceEEEeCCCchHHHH---HHHhcC-CcEEEECchhHHHhhhccCCcccccceEEEEecchhhh
Q psy15524 481 QTLEIFTKLCKSFTW-IVPSWLTGGEKMKSEK---ARIRKG-ISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRIL 555 (930)
Q Consensus 481 Q~~~~~~~~~~~~~~-~~~~~~~gg~~~~~~~---~~~~~~-~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~l~ 555 (930)
|+++.++.++...+. ..+..+.|+....... ..+..+ ++|+|+|||+|.+++... ...+++++|+||||+++
T Consensus 137 Qi~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~l---~~~~i~~iVVDEAD~ml 213 (1638)
T PRK14701 137 QTVEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPEM---KHLKFDFIFVDDVDAFL 213 (1638)
T ss_pred HHHHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHHH---hhCCCCEEEEECceecc
Confidence 999999998876542 3445667776654432 334444 899999999998876542 12679999999999998
Q ss_pred h-----------cCcHHHHHH-HHHHHh----------------------hcCccce-EEEEccccCHHHHHHHhhhcCC
Q psy15524 556 D-----------QGYERDIAE-FLEILK----------------------KQKPQFQ-SILLSATLTPAVQRLAGMTLQN 600 (930)
Q Consensus 556 ~-----------~g~~~~l~~-i~~~l~----------------------~~~~~~q-~vl~SAT~~~~~~~l~~~~~~~ 600 (930)
+ +||.+++.. +++.++ ..+...| ++++|||+++.... . ..+++
T Consensus 214 ~~~knid~~L~llGF~~e~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ll~~SAT~~~r~~~-~-~l~~~ 291 (1638)
T PRK14701 214 KASKNIDRSLQLLGFYEEIIEKAWKIIYLKKQGNIEDAMEKREILNKEIEKIGNKIGCLIVASATGKAKGDR-V-KLYRE 291 (1638)
T ss_pred ccccccchhhhcCCChHHHHHHHHHhhhcccccccchhhhhhhhhhhhhhhcCCCccEEEEEecCCCchhHH-H-HHhhc
Confidence 6 588877753 222211 1123445 57799999863111 1 22355
Q ss_pred CEEEEccCCCCcccCccceecCCCceEEEEEcCchhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhH---HHHHHHH
Q psy15524 601 PIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMA---DYHTELL 677 (930)
Q Consensus 601 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~---~~~~~~l 677 (930)
+..+.+.... .....+.+.|+.+....+ ..+..++... +..+||||+|++.+ +.+++.|
T Consensus 292 ~l~f~v~~~~---------~~lr~i~~~yi~~~~~~k-~~L~~ll~~~--------g~~gIVF~~t~~~~e~ae~la~~L 353 (1638)
T PRK14701 292 LLGFEVGSGR---------SALRNIVDVYLNPEKIIK-EHVRELLKKL--------GKGGLIFVPIDEGAEKAEEIEKYL 353 (1638)
T ss_pred CeEEEecCCC---------CCCCCcEEEEEECCHHHH-HHHHHHHHhC--------CCCeEEEEeccccchHHHHHHHHH
Confidence 6555553321 122456777776655544 4555555432 45789999998865 7788888
Q ss_pred hhhcCCCceEEEecCCCCHHHHHHHHHHhhcCCCcEEEec----cccccccCCCC-ccEEEEecCCC---ChhhHHhhh-
Q psy15524 678 STVLGENIAFFKLHGSMSQSERTEVFKTFRSVKSGVLICT----DVAARGLDLPL-VDWIVQYTAPS---SSTDYVHRV- 748 (930)
Q Consensus 678 ~~~~~~~~~~~~lhg~~~~~~R~~v~~~F~~~~~~vLv~T----~~~~~GlDip~-v~~VI~~~~p~---s~~~y~qr~- 748 (930)
... |+.+..+||+ |..++++|++|+.+||||| ++++||||+|+ |++||+||+|. +.+.|.|..
T Consensus 354 ~~~---Gi~a~~~h~~-----R~~~l~~F~~G~~~VLVaT~s~~gvaaRGIDiP~~Vryvi~~~~Pk~~~~~e~~~~~~~ 425 (1638)
T PRK14701 354 LED---GFKIELVSAK-----NKKGFDLFEEGEIDYLIGVATYYGTLVRGLDLPERIRFAVFYGVPKFRFRVDLEDPTIY 425 (1638)
T ss_pred HHC---CCeEEEecch-----HHHHHHHHHcCCCCEEEEecCCCCeeEecCccCCccCEEEEeCCCCCCcchhhcccchh
Confidence 874 8999999995 8899999999999999999 59999999999 99999999999 888777766
Q ss_pred ------------cccccCCCCceEEEEeCcccHHHHHHHHh
Q psy15524 749 ------------GRTARVGHEGSSLLFLIPSEVKLVEELQN 777 (930)
Q Consensus 749 ------------GRagR~g~~g~~~~~~~~~e~~~~~~l~~ 777 (930)
||+||.|.++.+++...+....+++.+..
T Consensus 426 ~~~~~~~~~~~~~~a~~~g~~~~~~~~~~~~~~~~~~~~l~ 466 (1638)
T PRK14701 426 RILGLLSEILKIEEELKEGIPIEGVLDVFPEDVEFLRSILK 466 (1638)
T ss_pred hhhcchHHHHHhhhhcccCCcchhHHHhHHHHHHHHHHHhc
Confidence 99999999888886666666666666543
|
|
| >PRK11664 ATP-dependent RNA helicase HrpB; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-36 Score=355.80 Aligned_cols=310 Identities=18% Similarity=0.241 Sum_probs=229.2
Q ss_pred HhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHHHHhhccCCCcceEE
Q psy15524 421 LSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSW 500 (930)
Q Consensus 421 ~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~ 500 (930)
+.+..+.++++++++||||||||.+|.+|+++... .+.+++|+.|||++|.|+++.+.+.........+++
T Consensus 12 ~i~~~l~~~~~vvv~A~TGSGKTt~~pl~lL~~~~---------~~~~ilvlqPrR~aA~qia~rva~~l~~~~g~~VGy 82 (812)
T PRK11664 12 ELLTALKTAPQVLLKAPTGAGKSTWLPLQLLQHGG---------INGKIIMLEPRRLAARNVAQRLAEQLGEKPGETVGY 82 (812)
T ss_pred HHHHHHHhCCCEEEEcCCCCCHHHHHHHHHHHcCC---------cCCeEEEECChHHHHHHHHHHHHHHhCcccCceEEE
Confidence 34455667899999999999999999999986531 124799999999999999999876554433445666
Q ss_pred EeCCCchHHHHHHHhcCCcEEEECchhHHHhhhccCCcccccceEEEEecchh-hhhcCcHHHHHHHHHHHhhcCccceE
Q psy15524 501 LTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADR-ILDQGYERDIAEFLEILKKQKPQFQS 579 (930)
Q Consensus 501 ~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~-l~~~g~~~~l~~i~~~l~~~~~~~q~ 579 (930)
.+++.+... ....|+|+|||+|++++.. ...++++++|||||+|. .++..+. +..+.+.+...+++.|+
T Consensus 83 ~vr~~~~~~------~~t~I~v~T~G~Llr~l~~--d~~L~~v~~IIlDEaHER~l~~Dl~--L~ll~~i~~~lr~~lql 152 (812)
T PRK11664 83 RMRAESKVG------PNTRLEVVTEGILTRMIQR--DPELSGVGLVILDEFHERSLQADLA--LALLLDVQQGLRDDLKL 152 (812)
T ss_pred EecCccccC------CCCcEEEEChhHHHHHHhh--CCCcCcCcEEEEcCCCccccccchH--HHHHHHHHHhCCccceE
Confidence 777654322 3467999999999998875 34689999999999995 3433221 11122223333458899
Q ss_pred EEEccccCHHHHHHHhhhcCCCEEEEccCCCCcccCccceecCCCceEEEEEcCchhhHH-HHHHHHHhhccCCCcCCCc
Q psy15524 580 ILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLV-ALASFILGKCQNVNEDEES 658 (930)
Q Consensus 580 vl~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~l~~~~~~~~~~~~~ 658 (930)
++||||++.. .+ ..++.++..+...+.. -.+.+.|...+...+.. .+...+...... ..+
T Consensus 153 ilmSATl~~~--~l-~~~~~~~~~I~~~gr~------------~pV~~~y~~~~~~~~~~~~v~~~l~~~l~~----~~g 213 (812)
T PRK11664 153 LIMSATLDND--RL-QQLLPDAPVIVSEGRS------------FPVERRYQPLPAHQRFDEAVARATAELLRQ----ESG 213 (812)
T ss_pred EEEecCCCHH--HH-HHhcCCCCEEEecCcc------------ccceEEeccCchhhhHHHHHHHHHHHHHHh----CCC
Confidence 9999999864 23 3455555444433211 12455565555444443 122222222211 257
Q ss_pred eEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHHHHHHHHHHhhcCCCcEEEeccccccccCCCCccEEEEecCC
Q psy15524 659 KMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAP 738 (930)
Q Consensus 659 k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~v~~~F~~~~~~vLv~T~~~~~GlDip~v~~VI~~~~p 738 (930)
.+|||+++.++++.+++.|.+....++.+..+||+|++.+|..+++.|++|+.+||||||++++|||||+|++||+++.+
T Consensus 214 ~iLVFlpg~~ei~~l~~~L~~~~~~~~~v~~Lhg~l~~~eq~~~~~~~~~G~rkVlvATnIAErsLtIp~V~~VID~Gl~ 293 (812)
T PRK11664 214 SLLLFLPGVGEIQRVQEQLASRVASDVLLCPLYGALSLAEQQKAILPAPAGRRKVVLATNIAETSLTIEGIRLVVDSGLE 293 (812)
T ss_pred CEEEEcCCHHHHHHHHHHHHHhccCCceEEEeeCCCCHHHHHHHhccccCCCeEEEEecchHHhcccccCceEEEECCCc
Confidence 89999999999999999998755457889999999999999999999999999999999999999999999999998866
Q ss_pred C------------------ChhhHHhhhcccccCCCCceEEEEeCcccH
Q psy15524 739 S------------------SSTDYVHRVGRTARVGHEGSSLLFLIPSEV 769 (930)
Q Consensus 739 ~------------------s~~~y~qr~GRagR~g~~g~~~~~~~~~e~ 769 (930)
. |..+|.||.|||||. .+|.|+.++++.+.
T Consensus 294 r~~~yd~~~g~~~L~~~~iSkasa~QR~GRaGR~-~~G~cyrL~t~~~~ 341 (812)
T PRK11664 294 RVARFDPKTGLTRLVTQRISQASMTQRAGRAGRL-EPGICLHLYSKEQA 341 (812)
T ss_pred ccccccccCCcceeEEEeechhhhhhhccccCCC-CCcEEEEecCHHHH
Confidence 4 345899999999998 69999999997655
|
|
| >COG1202 Superfamily II helicase, archaea-specific [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-35 Score=314.47 Aligned_cols=346 Identities=21% Similarity=0.279 Sum_probs=275.5
Q ss_pred CCCCCCCCCCHHHHHHHHhcCCCCCCCHHHHHhHHh-hhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCee
Q psy15524 390 TSYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQP-ILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIY 468 (930)
Q Consensus 390 ~~f~~l~~l~~~~~~~l~~~~~~~~~~~iQ~~~i~~-il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~ 468 (930)
...++| ++|+.....|. ..|++.+.|+|..++.. +++|+|.+|.++|+|||||+..++=+..++. .|.+
T Consensus 194 ~~vdeL-dipe~fk~~lk-~~G~~eLlPVQ~laVe~GLLeG~nllVVSaTasGKTLIgElAGi~~~l~--------~g~K 263 (830)
T COG1202 194 VPVDEL-DIPEKFKRMLK-REGIEELLPVQVLAVEAGLLEGENLLVVSATASGKTLIGELAGIPRLLS--------GGKK 263 (830)
T ss_pred cccccc-CCcHHHHHHHH-hcCcceecchhhhhhhhccccCCceEEEeccCCCcchHHHhhCcHHHHh--------CCCe
Confidence 346778 89999999987 47999999999999987 7789999999999999999999998888874 4778
Q ss_pred EEEEccCHHHHHHHHHHHHHhhccCCCcceEEEeCCCchHHH----HHHHhcCCcEEEECchhHHHhhhccCCcccccce
Q psy15524 469 AVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSE----KARIRKGISILVATPGRLLDHCKHTETLKFSKVE 544 (930)
Q Consensus 469 ~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~----~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~ 544 (930)
.|+++|..+||+|-++.|+..+...+..+ ..-.|-...+.. .......+||||+|.+-+..+++.. -.+.++.
T Consensus 264 mlfLvPLVALANQKy~dF~~rYs~Lglkv-airVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLRtg--~~lgdiG 340 (830)
T COG1202 264 MLFLVPLVALANQKYEDFKERYSKLGLKV-AIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRTG--KDLGDIG 340 (830)
T ss_pred EEEEehhHHhhcchHHHHHHHhhcccceE-EEEechhhhcccCCccccCCCCCCcEEEeechhHHHHHHcC--Ccccccc
Confidence 99999999999999999999988776543 333333221111 1112235899999999998887753 5689999
Q ss_pred EEEEecchhhhhcCcHHHHHHHHHHHhhcCccceEEEEccccCHHHHHHHhhhcCCCEEEEccCCCCcccCccceecCCC
Q psy15524 545 HLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDS 624 (930)
Q Consensus 545 ~lVlDEah~l~~~g~~~~l~~i~~~l~~~~~~~q~vl~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 624 (930)
.+||||+|.+-+...+.-+.-++.+++...+..|++.+|||+.+. ..+++..-.+++..+ ..|-+
T Consensus 341 tVVIDEiHtL~deERG~RLdGLI~RLr~l~~~AQ~i~LSATVgNp-~elA~~l~a~lV~y~--------------~RPVp 405 (830)
T COG1202 341 TVVIDEIHTLEDEERGPRLDGLIGRLRYLFPGAQFIYLSATVGNP-EELAKKLGAKLVLYD--------------ERPVP 405 (830)
T ss_pred eEEeeeeeeccchhcccchhhHHHHHHHhCCCCeEEEEEeecCCh-HHHHHHhCCeeEeec--------------CCCCC
Confidence 999999999988888888899999999888899999999999763 455655544444332 13456
Q ss_pred ceEEEEEcC-chhhHHHHHHHHHhhccCC-CcCCCceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHHHHHHH
Q psy15524 625 LKQHFIVTP-PKLRLVALASFILGKCQNV-NEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEV 702 (930)
Q Consensus 625 ~~~~~~~~~-~~~~~~~l~~~l~~~~~~~-~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~v 702 (930)
+..+.+++. ...|...+..+.+...... ...-.+++|||+.|+..|..++..|.. +|+....+|++|+..+|..+
T Consensus 406 lErHlvf~~~e~eK~~ii~~L~k~E~~~~sskg~rGQtIVFT~SRrr~h~lA~~L~~---kG~~a~pYHaGL~y~eRk~v 482 (830)
T COG1202 406 LERHLVFARNESEKWDIIARLVKREFSTESSKGYRGQTIVFTYSRRRCHELADALTG---KGLKAAPYHAGLPYKERKSV 482 (830)
T ss_pred hhHeeeeecCchHHHHHHHHHHHHHHhhhhccCcCCceEEEecchhhHHHHHHHhhc---CCcccccccCCCcHHHHHHH
Confidence 777777777 4566666665555432221 122367999999999999999999986 48999999999999999999
Q ss_pred HHHhhcCCCcEEEeccccccccCCCCccEEE----EecCCCChhhHHhhhcccccCCC--CceEEEEeCc
Q psy15524 703 FKTFRSVKSGVLICTDVAARGLDLPLVDWIV----QYTAPSSSTDYVHRVGRTARVGH--EGSSLLFLIP 766 (930)
Q Consensus 703 ~~~F~~~~~~vLv~T~~~~~GlDip~v~~VI----~~~~p~s~~~y~qr~GRagR~g~--~g~~~~~~~~ 766 (930)
..+|.++++.++|+|.+++-|+|||+-.+|+ ...-..++.+|.||.|||||.+. .|..++++.|
T Consensus 483 E~~F~~q~l~~VVTTAAL~AGVDFPASQVIFEsLaMG~~WLs~~EF~QM~GRAGRp~yHdrGkVyllvep 552 (830)
T COG1202 483 ERAFAAQELAAVVTTAALAAGVDFPASQVIFESLAMGIEWLSVREFQQMLGRAGRPDYHDRGKVYLLVEP 552 (830)
T ss_pred HHHHhcCCcceEeehhhhhcCCCCchHHHHHHHHHcccccCCHHHHHHHhcccCCCCcccCceEEEEecC
Confidence 9999999999999999999999999876554 23345689999999999999987 5888888875
|
|
| >KOG0352|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-36 Score=306.11 Aligned_cols=344 Identities=20% Similarity=0.266 Sum_probs=253.7
Q ss_pred HHHHHHHhcCCCCCC-CHHHHHhHHhhhcC-CcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHH
Q psy15524 401 FMKKNLNEGMNITQV-TTVQQLSIQPILDG-GDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTREL 478 (930)
Q Consensus 401 ~~~~~l~~~~~~~~~-~~iQ~~~i~~il~~-~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreL 478 (930)
.+.++|.+.||+..+ ++.|++|+..+..+ +||.|++|||+||+|||.+|.+-. +...||++|..+|
T Consensus 6 ~VreaLKK~FGh~kFKs~LQE~A~~c~VK~k~DVyVsMPTGaGKSLCyQLPaL~~------------~gITIV~SPLiAL 73 (641)
T KOG0352|consen 6 KVREALKKLFGHKKFKSRLQEQAINCIVKRKCDVYVSMPTGAGKSLCYQLPALVH------------GGITIVISPLIAL 73 (641)
T ss_pred HHHHHHHHHhCchhhcChHHHHHHHHHHhccCcEEEeccCCCchhhhhhchHHHh------------CCeEEEehHHHHH
Confidence 467788888999865 89999999999876 689999999999999999999832 3378999999999
Q ss_pred HHHHHHHHHHhhccCCCcceEEEeCCCchHH---HHHHHhcCCcEEEECchhHH-----HhhhccCCcccccceEEEEec
Q psy15524 479 ALQTLEIFTKLCKSFTWIVPSWLTGGEKMKS---EKARIRKGISILVATPGRLL-----DHCKHTETLKFSKVEHLVLDE 550 (930)
Q Consensus 479 a~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~---~~~~~~~~~~Ilv~Tp~rl~-----~~l~~~~~~~~~~l~~lVlDE 550 (930)
...+.+.+.++--....+...+ ....+.. ...+.+....|++-||+.-. +++.. ..+-.-+.++|+||
T Consensus 74 IkDQiDHL~~LKVp~~SLNSKl--St~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn~--L~~r~~L~Y~vVDE 149 (641)
T KOG0352|consen 74 IKDQIDHLKRLKVPCESLNSKL--STVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLNG--LANRDVLRYIVVDE 149 (641)
T ss_pred HHHHHHHHHhcCCchhHhcchh--hHHHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHHH--HhhhceeeeEEech
Confidence 9999999887643221111110 0111111 11222345679999998642 22211 11234589999999
Q ss_pred chhhhhcC--cHHHHHHHHHHHhhcCccceEEEEccccCHHHHHH--HhhhcCCCEEEEccCCCCcccCccceecCCCce
Q psy15524 551 ADRILDQG--YERDIAEFLEILKKQKPQFQSILLSATLTPAVQRL--AGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLK 626 (930)
Q Consensus 551 ah~l~~~g--~~~~l~~i~~~l~~~~~~~q~vl~SAT~~~~~~~l--~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 626 (930)
||++.+|| |.+++-.+- .|+...++...+.++||.++.+++- ....+.+|+.+--... --.
T Consensus 150 AHCVSQWGHDFRPDYL~LG-~LRS~~~~vpwvALTATA~~~VqEDi~~qL~L~~PVAiFkTP~--------------FR~ 214 (641)
T KOG0352|consen 150 AHCVSQWGHDFRPDYLTLG-SLRSVCPGVPWVALTATANAKVQEDIAFQLKLRNPVAIFKTPT--------------FRD 214 (641)
T ss_pred hhhHhhhccccCcchhhhh-hHHhhCCCCceEEeecccChhHHHHHHHHHhhcCcHHhccCcc--------------hhh
Confidence 99999999 667766543 3444456889999999999987653 3445667765432211 111
Q ss_pred EEEEEcC----chhhHHHHHHHHHhhccCCC------cCCCceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCH
Q psy15524 627 QHFIVTP----PKLRLVALASFILGKCQNVN------EDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQ 696 (930)
Q Consensus 627 ~~~~~~~----~~~~~~~l~~~l~~~~~~~~------~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~ 696 (930)
..++.+. -.+-+..|.++-......+. ....+..||||.|++.++.++-.|... |++...+|+++..
T Consensus 215 NLFYD~~~K~~I~D~~~~LaDF~~~~LG~~~~~~~~~K~~~GCGIVYCRTR~~cEq~AI~l~~~---Gi~A~AYHAGLK~ 291 (641)
T KOG0352|consen 215 NLFYDNHMKSFITDCLTVLADFSSSNLGKHEKASQNKKTFTGCGIVYCRTRNECEQVAIMLEIA---GIPAMAYHAGLKK 291 (641)
T ss_pred hhhHHHHHHHHhhhHhHhHHHHHHHhcCChhhhhcCCCCcCcceEEEeccHHHHHHHHHHhhhc---CcchHHHhccccc
Confidence 1111000 11223445555444332211 122467899999999999999888764 8999999999999
Q ss_pred HHHHHHHHHhhcCCCcEEEeccccccccCCCCccEEEEecCCCChhhHHhhhcccccCCCCceEEEEeCcccHHHHHHHH
Q psy15524 697 SERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPSEVKLVEELQ 776 (930)
Q Consensus 697 ~~R~~v~~~F~~~~~~vLv~T~~~~~GlDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~e~~~~~~l~ 776 (930)
.+|.++.++|.+++..|++||..+++|+|-|+|+.|||+++|.+..-|.|..|||||.|....|-++++..+..-++.|.
T Consensus 292 ~ERTeVQe~WM~~~~PvI~AT~SFGMGVDKp~VRFViHW~~~qn~AgYYQESGRAGRDGk~SyCRLYYsR~D~~~i~FLi 371 (641)
T KOG0352|consen 292 KERTEVQEKWMNNEIPVIAATVSFGMGVDKPDVRFVIHWSPSQNLAGYYQESGRAGRDGKRSYCRLYYSRQDKNALNFLV 371 (641)
T ss_pred chhHHHHHHHhcCCCCEEEEEeccccccCCcceeEEEecCchhhhHHHHHhccccccCCCccceeeeecccchHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998888876
Q ss_pred hc
Q psy15524 777 NR 778 (930)
Q Consensus 777 ~~ 778 (930)
..
T Consensus 372 ~~ 373 (641)
T KOG0352|consen 372 SG 373 (641)
T ss_pred hh
Confidence 53
|
|
| >TIGR01054 rgy reverse gyrase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=354.79 Aligned_cols=293 Identities=19% Similarity=0.269 Sum_probs=213.7
Q ss_pred HHHHhcCCCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHH
Q psy15524 404 KNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTL 483 (930)
Q Consensus 404 ~~l~~~~~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~ 483 (930)
+.+.+..|+ .|+++|+.++|.++.|+|++++||||||||+ |.+|+...+.. .+.+++||+|||+||.|++
T Consensus 69 ~~f~~~~g~-~p~~iQ~~~i~~il~G~d~vi~ApTGsGKT~-f~l~~~~~l~~--------~g~~vLIL~PTreLa~Qi~ 138 (1171)
T TIGR01054 69 EFFKKAVGS-EPWSIQKMWAKRVLRGDSFAIIAPTGVGKTT-FGLAMSLFLAK--------KGKRCYIILPTTLLVIQVA 138 (1171)
T ss_pred HHHHHhcCC-CCcHHHHHHHHHHhCCCeEEEECCCCCCHHH-HHHHHHHHHHh--------cCCeEEEEeCHHHHHHHHH
Confidence 334444454 7999999999999999999999999999997 67777766543 3678999999999999999
Q ss_pred HHHHHhhccCCCcc--eEEEeCCCchHHH---HHHHhc-CCcEEEECchhHHHhhhccCCcccccceEEEEecchhhhh-
Q psy15524 484 EIFTKLCKSFTWIV--PSWLTGGEKMKSE---KARIRK-GISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILD- 556 (930)
Q Consensus 484 ~~~~~~~~~~~~~~--~~~~~gg~~~~~~---~~~~~~-~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~l~~- 556 (930)
+.+.+++...+... .++++||...... ...+.+ +++|+|+|||+|.+++.... . +++++|+||||++++
T Consensus 139 ~~l~~l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~l~---~-~~~~iVvDEaD~~L~~ 214 (1171)
T TIGR01054 139 EKISSLAEKAGVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDELG---P-KFDFIFVDDVDALLKA 214 (1171)
T ss_pred HHHHHHHHhcCCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHHhc---C-CCCEEEEeChHhhhhc
Confidence 99999987554322 2346677665432 233444 49999999999998876521 2 899999999999998
Q ss_pred ----------cCcHHH-HHHHHHHH-------------------hhcCccce--EEEEccc-cCHHHHHHHhhhcCCCEE
Q psy15524 557 ----------QGYERD-IAEFLEIL-------------------KKQKPQFQ--SILLSAT-LTPAVQRLAGMTLQNPIQ 603 (930)
Q Consensus 557 ----------~g~~~~-l~~i~~~l-------------------~~~~~~~q--~vl~SAT-~~~~~~~l~~~~~~~~~~ 603 (930)
+||.++ +..++..+ ...+..+| ++++||| .|..+.. ..++++..
T Consensus 215 ~k~vd~il~llGF~~e~i~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~li~~SAT~~p~~~~~---~l~r~ll~ 291 (1171)
T TIGR01054 215 SKNVDKLLKLLGFSEELIEKAWKLIRLRLKLYRALHAKKRLELLEAIPGKKRGCLIVSSATGRPRGKRA---KLFRELLG 291 (1171)
T ss_pred cccHHHHHHHcCCCHHHHHHHHHHhhhccccchHHHHHHHHHHHHhhhhccCcEEEEEeCCCCccccHH---HHcccccc
Confidence 788753 55554322 11222344 5678999 4554432 22344444
Q ss_pred EEccCCCCcccCccceecCCCceEEEEEcCchhhHHHHHHHHHhhccCCCcCCCceEEEEecch---hhHHHHHHHHhhh
Q psy15524 604 IDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQ---DMADYHTELLSTV 680 (930)
Q Consensus 604 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~---~~~~~~~~~l~~~ 680 (930)
+.+.... .....+.+.|..... +...+..++... +.++||||+++ +.++.+++.|.+.
T Consensus 292 ~~v~~~~---------~~~r~I~~~~~~~~~--~~~~L~~ll~~l--------~~~~IVFv~t~~~~~~a~~l~~~L~~~ 352 (1171)
T TIGR01054 292 FEVGGGS---------DTLRNVVDVYVEDED--LKETLLEIVKKL--------GTGGIVYVSIDYGKEKAEEIAEFLENH 352 (1171)
T ss_pred eEecCcc---------ccccceEEEEEeccc--HHHHHHHHHHHc--------CCCEEEEEeccccHHHHHHHHHHHHhC
Confidence 4443221 123456677765443 233455555432 45799999999 9999999999874
Q ss_pred cCCCceEEEecCCCCHHHHHHHHHHhhcCCCcEEEe----ccccccccCCCC-ccEEEEecCCC
Q psy15524 681 LGENIAFFKLHGSMSQSERTEVFKTFRSVKSGVLIC----TDVAARGLDLPL-VDWIVQYTAPS 739 (930)
Q Consensus 681 ~~~~~~~~~lhg~~~~~~R~~v~~~F~~~~~~vLv~----T~~~~~GlDip~-v~~VI~~~~p~ 739 (930)
|+.+..+||+|++ .++++|++|+.+|||| ||+++||||+|+ |++||+||+|.
T Consensus 353 ---g~~a~~lhg~~~~----~~l~~Fr~G~~~vLVata~~tdv~aRGIDip~~V~~vI~~~~P~ 409 (1171)
T TIGR01054 353 ---GVKAVAYHATKPK----EDYEKFAEGEIDVLIGVASYYGTLVRGLDLPERVRYAVFLGVPK 409 (1171)
T ss_pred ---CceEEEEeCCCCH----HHHHHHHcCCCCEEEEeccccCcccccCCCCccccEEEEECCCC
Confidence 8899999999973 6899999999999999 599999999999 89999998773
|
Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA. |
| >TIGR01587 cas3_core CRISPR-associated helicase Cas3 | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-35 Score=325.66 Aligned_cols=301 Identities=19% Similarity=0.199 Sum_probs=206.7
Q ss_pred cEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHHHHhhccCCCcceEEEeCCCch---
Q psy15524 431 DVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKM--- 507 (930)
Q Consensus 431 d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~--- 507 (930)
|+++.||||||||++|++|++..+.. ..+.+++|++|+++|+.|+++.+..++.. ..+.+.|+...
T Consensus 1 ~vvi~apTGsGKT~~~~~~~l~~~~~-------~~~~~ii~v~P~~~L~~q~~~~l~~~f~~----~~~~~~~~~~~~~~ 69 (358)
T TIGR01587 1 LLVIEAPTGYGKTEAALLWALHSIKS-------QKADRVIIALPTRATINAMYRRAKELFGS----NLGLLHSSSSFKRI 69 (358)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHhh-------CCCCeEEEEeehHHHHHHHHHHHHHHhCc----ccEEeeccHHHHHH
Confidence 68999999999999999999987653 34668999999999999999999998643 12222222110
Q ss_pred ---------HHHHHHH------hcCCcEEEECchhHHHhhhcc-CC--cccc--cceEEEEecchhhhhcCcHHHHHHHH
Q psy15524 508 ---------KSEKARI------RKGISILVATPGRLLDHCKHT-ET--LKFS--KVEHLVLDEADRILDQGYERDIAEFL 567 (930)
Q Consensus 508 ---------~~~~~~~------~~~~~Ilv~Tp~rl~~~l~~~-~~--~~~~--~l~~lVlDEah~l~~~g~~~~l~~i~ 567 (930)
....... ....+|+|+||+++...+... .. ..+. ..+++|+||+|.+.+.+++. +..++
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~-l~~~l 148 (358)
T TIGR01587 70 KEMGDSEEFEHLFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEYTLAL-ILAVL 148 (358)
T ss_pred hccCCchhHHHHHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHHHHHH-HHHHH
Confidence 0111111 123679999999998776541 11 1122 23789999999999876554 66666
Q ss_pred HHHhhcCccceEEEEccccCHHHHHHHhhhcCCCEEEEccCCCCcccCccceecCCCceEEEEEc--CchhhHHHHHHHH
Q psy15524 568 EILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVT--PPKLRLVALASFI 645 (930)
Q Consensus 568 ~~l~~~~~~~q~vl~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~l 645 (930)
..+.. .+.|++++|||+|+.+.++.......+........ . ......+.+..+ ....+...+...+
T Consensus 149 ~~l~~--~~~~~i~~SATlp~~l~~~~~~~~~~~~~~~~~~~-----~-----~~~~~~~~~~~~~~~~~~~~~~l~~l~ 216 (358)
T TIGR01587 149 EVLKD--NDVPILLMSATLPKFLKEYAEKIGYVEFNEPLDLK-----E-----ERRFERHRFIKIESDKVGEISSLERLL 216 (358)
T ss_pred HHHHH--cCCCEEEEecCchHHHHHHHhcCCCcccccCCCCc-----c-----ccccccccceeeccccccCHHHHHHHH
Confidence 66652 36899999999998777776554322111100000 0 000011222111 1123344444444
Q ss_pred HhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHHHHHHH----HHHhhcCCCcEEEeccccc
Q psy15524 646 LGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEV----FKTFRSVKSGVLICTDVAA 721 (930)
Q Consensus 646 ~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~v----~~~F~~~~~~vLv~T~~~~ 721 (930)
... . .++++||||+|++.++.+++.|.+... +..+..+||+|++.+|..+ ++.|++|+..|||||++++
T Consensus 217 ~~~-~-----~~~~~lVf~~t~~~~~~~~~~L~~~~~-~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~~~~ilvaT~~~~ 289 (358)
T TIGR01587 217 EFI-K-----KGGKIAIIVNTVDRAQEFYQQLKENAP-EEEIMLLHSRFTEKDRAKKEAELLEEMKKNEKFVIVATQVIE 289 (358)
T ss_pred HHh-h-----CCCeEEEEECCHHHHHHHHHHHHhhcC-CCeEEEEECCCCHHHHHHHHHHHHHHhcCCCCeEEEECcchh
Confidence 321 1 167999999999999999999987532 2358889999999999764 8899999999999999999
Q ss_pred cccCCCCccEEEEecCCCChhhHHhhhcccccCCCCc----eEEEEeC
Q psy15524 722 RGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEG----SSLLFLI 765 (930)
Q Consensus 722 ~GlDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~g----~~~~~~~ 765 (930)
+|+|+| +++||++..| ++.|+||+||+||.|+.+ ..++|..
T Consensus 290 ~GiDi~-~~~vi~~~~~--~~~~iqr~GR~gR~g~~~~~~~~~~v~~~ 334 (358)
T TIGR01587 290 ASLDIS-ADVMITELAP--IDSLIQRLGRLHRYGRKNGENFEVYIITI 334 (358)
T ss_pred ceeccC-CCEEEEcCCC--HHHHHHHhccccCCCCCCCCCCeEEEEee
Confidence 999996 8889988776 789999999999998643 4444444
|
This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model. |
| >KOG0338|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-36 Score=314.73 Aligned_cols=249 Identities=33% Similarity=0.522 Sum_probs=217.4
Q ss_pred CCCccCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHH
Q psy15524 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKL 80 (930)
Q Consensus 1 ~g~~~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~ 80 (930)
|||..|||+|..+||.++.|+|++.||.||||||.+|++|+|.++.-...+ ....++|||+|||||+.|++...+++
T Consensus 199 lGy~~PTpIQ~a~IPvallgkDIca~A~TGsGKTAAF~lPiLERLlYrPk~---~~~TRVLVL~PTRELaiQv~sV~~ql 275 (691)
T KOG0338|consen 199 LGYKKPTPIQVATIPVALLGKDICACAATGSGKTAAFALPILERLLYRPKK---VAATRVLVLVPTRELAIQVHSVTKQL 275 (691)
T ss_pred cCCCCCCchhhhcccHHhhcchhhheecccCCchhhhHHHHHHHHhcCccc---CcceeEEEEeccHHHHHHHHHHHHHH
Confidence 699999999999999999999999999999999999999999998764433 34678999999999999999999999
Q ss_pred hhhcCCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCcHHHHHHHHHH
Q psy15524 81 CKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEI 160 (930)
Q Consensus 81 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~~~~~~~i~~~ 160 (930)
+.... +.+++..||-+...|...++.+|||+|+||+|+.+++.+...+.++++..+|+||||+|++.+|..++..|++.
T Consensus 276 aqFt~-I~~~L~vGGL~lk~QE~~LRs~PDIVIATPGRlIDHlrNs~sf~ldsiEVLvlDEADRMLeegFademnEii~l 354 (691)
T KOG0338|consen 276 AQFTD-ITVGLAVGGLDLKAQEAVLRSRPDIVIATPGRLIDHLRNSPSFNLDSIEVLVLDEADRMLEEGFADEMNEIIRL 354 (691)
T ss_pred Hhhcc-ceeeeeecCccHHHHHHHHhhCCCEEEecchhHHHHhccCCCccccceeEEEechHHHHHHHHHHHHHHHHHHh
Confidence 88655 99999999999999999999999999999999999999999999999999999999999999998888777766
Q ss_pred HhhcCCCceEEEEEeecCCCccccccccccccccccchhhhhhhhhhhccchhhHHHHHHHHhhcCcCceEEEEecccch
Q psy15524 161 LKKQKPQFQSILLSATLTPATCWCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLTP 240 (930)
Q Consensus 161 l~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~de~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~sat~~~ 240 (930)
+++.+ |+++|||||+.
T Consensus 355 cpk~R----------------------------------------------------------------QTmLFSATMte 370 (691)
T KOG0338|consen 355 CPKNR----------------------------------------------------------------QTMLFSATMTE 370 (691)
T ss_pred ccccc----------------------------------------------------------------cceeehhhhHH
Confidence 64433 99999999999
Q ss_pred HHHHhhhccccCCeeeccCCcccccCCCcccccCCCceeEEEEcCc---chhHHHHHHHHhhhccccccCCcceEEEEEe
Q psy15524 241 AVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPP---KLRLVALASFILGKCQNVNEDEESKMLVFMA 317 (930)
Q Consensus 241 ~~~~l~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~~k~~~l~~~l~~~~~~~~~~~~~~~iVF~~ 317 (930)
.+..|+...|..|+.|.+++... .+..+.|.|+.+.+ .++...|..++. ..-...+|||+.
T Consensus 371 eVkdL~slSL~kPvrifvd~~~~---------~a~~LtQEFiRIR~~re~dRea~l~~l~~-------rtf~~~~ivFv~ 434 (691)
T KOG0338|consen 371 EVKDLASLSLNKPVRIFVDPNKD---------TAPKLTQEFIRIRPKREGDREAMLASLIT-------RTFQDRTIVFVR 434 (691)
T ss_pred HHHHHHHhhcCCCeEEEeCCccc---------cchhhhHHHheeccccccccHHHHHHHHH-------HhcccceEEEEe
Confidence 99999999999999999887763 35667777776542 346666777763 233568999999
Q ss_pred cccchhhhHHHHhhhh
Q psy15524 318 TQDMADYHTELLSTKK 333 (930)
Q Consensus 318 s~~~~~~l~~~L~~~~ 333 (930)
|+.+|+.+.-.|.-.|
T Consensus 435 tKk~AHRl~IllGLlg 450 (691)
T KOG0338|consen 435 TKKQAHRLRILLGLLG 450 (691)
T ss_pred hHHHHHHHHHHHHHhh
Confidence 9999999988886554
|
|
| >KOG0345|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-35 Score=306.45 Aligned_cols=253 Identities=35% Similarity=0.548 Sum_probs=222.7
Q ss_pred CCCccCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHH
Q psy15524 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKL 80 (930)
Q Consensus 1 ~g~~~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~ 80 (930)
+||+.+||+|..+||.+++++|+++.|+||||||++|++|++..+.+.....+. ...-+|||+|||||+.|+.+.+..+
T Consensus 24 ~GF~~mTpVQa~tIPlll~~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~-~~vgalIIsPTRELa~QI~~V~~~F 102 (567)
T KOG0345|consen 24 SGFEKMTPVQAATIPLLLKNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPP-GQVGALIISPTRELARQIREVAQPF 102 (567)
T ss_pred cCCcccCHHHHhhhHHHhcCCceEEEcCCCCCchhhHHHHHHHHHHhhccCCCc-cceeEEEecCcHHHHHHHHHHHHHH
Confidence 599999999999999999999999999999999999999999999664433222 2457999999999999999999999
Q ss_pred hhhcCCceeEEeeCCCchHHHHHHhc-CCCcEEEEChHHHHHHHhc-CCCccCCCccEEEEcccccccccCcHHHHHHHH
Q psy15524 81 CKSFTWIVPSWLTGGEKMKSEKARIR-KGISILVATPGRLLDHCKH-TETLKFSKVEHLVLDEADRILDQGYERDIAEFL 158 (930)
Q Consensus 81 ~~~~~~~~~~~~~g~~~~~~~~~~l~-~~~~Ilv~Tp~~l~~~l~~-~~~~~l~~l~~vViDE~h~~~~~~~~~~~~~i~ 158 (930)
...+..+.+.++.||....++...+. .++.|+||||+||.+++.+ ...++++++.++|+||||++++.||...+..|+
T Consensus 103 ~~~l~~l~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL~di~~~~~~~l~~rsLe~LVLDEADrLldmgFe~~~n~IL 182 (567)
T KOG0345|consen 103 LEHLPNLNCELLVGGRSVEEDIKTFKEEGPNILVGTPGRLLDILQREAEKLSFRSLEILVLDEADRLLDMGFEASVNTIL 182 (567)
T ss_pred HHhhhccceEEEecCccHHHHHHHHHHhCCcEEEeCchhHHHHHhchhhhccccccceEEecchHhHhcccHHHHHHHHH
Confidence 99888889999999988887776655 5689999999999999987 356668899999999999999999999999999
Q ss_pred HHHhhcCCCceEEEEEeecCCCccccccccccccccccchhhhhhhhhhhccchhhHHHHHHHHhhcCcCceEEEEeccc
Q psy15524 159 EILKKQKPQFQSILLSATLTPATCWCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATL 238 (930)
Q Consensus 159 ~~l~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~de~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~sat~ 238 (930)
+.||+++ .+-+||||.
T Consensus 183 s~LPKQR----------------------------------------------------------------RTGLFSATq 198 (567)
T KOG0345|consen 183 SFLPKQR----------------------------------------------------------------RTGLFSATQ 198 (567)
T ss_pred Hhccccc----------------------------------------------------------------ccccccchh
Confidence 8887654 788999999
Q ss_pred chHHHHhhhccccCCeeeccCCcccccCCCcccccCCCceeEEEEcCcchhHHHHHHHHhhhccccccCCcceEEEEEec
Q psy15524 239 TPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMAT 318 (930)
Q Consensus 239 ~~~~~~l~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~iVF~~s 318 (930)
++.+..+....++||+.+.+...... ..|+.+.-+|..|+...|...++++| ......++|||.+|
T Consensus 199 ~~~v~dL~raGLRNpv~V~V~~k~~~-------~tPS~L~~~Y~v~~a~eK~~~lv~~L-------~~~~~kK~iVFF~T 264 (567)
T KOG0345|consen 199 TQEVEDLARAGLRNPVRVSVKEKSKS-------ATPSSLALEYLVCEADEKLSQLVHLL-------NNNKDKKCIVFFPT 264 (567)
T ss_pred hHHHHHHHHhhccCceeeeecccccc-------cCchhhcceeeEecHHHHHHHHHHHH-------hccccccEEEEecC
Confidence 99999999999999999877665521 26888999999999999999999999 44667899999999
Q ss_pred ccchhhhHHHHhhh
Q psy15524 319 QDMADYHTELLSTK 332 (930)
Q Consensus 319 ~~~~~~l~~~L~~~ 332 (930)
...++.++..+...
T Consensus 265 CasVeYf~~~~~~~ 278 (567)
T KOG0345|consen 265 CASVEYFGKLFSRL 278 (567)
T ss_pred cchHHHHHHHHHHH
Confidence 99999999999876
|
|
| >KOG0342|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-35 Score=310.03 Aligned_cols=252 Identities=38% Similarity=0.614 Sum_probs=223.0
Q ss_pred CCCccCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHH
Q psy15524 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKL 80 (930)
Q Consensus 1 ~g~~~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~ 80 (930)
|||+++|++|+.+++.++.|+|+++.|.||+|||++|++|+++.+...+... .++..+||++||||||.|++.+++++
T Consensus 100 ~GF~~MT~VQ~~ti~pll~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~--r~~~~vlIi~PTRELA~Q~~~eak~L 177 (543)
T KOG0342|consen 100 MGFETMTPVQQKTIPPLLEGKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKP--RNGTGVLIICPTRELAMQIFAEAKEL 177 (543)
T ss_pred cCccchhHHHHhhcCccCCCccceeeeccCCCceeeehhHHHHHHHhcccCC--CCCeeEEEecccHHHHHHHHHHHHHH
Confidence 7999999999999999999999999999999999999999999998866654 36888999999999999999999999
Q ss_pred hhhcCCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCcHHHHHHHHHH
Q psy15524 81 CKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEI 160 (930)
Q Consensus 81 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~~~~~~~i~~~ 160 (930)
..+...+.+..+.||.+.......+.+++.|+|+||+||++++.+...+.+++++++|+||||++++.||+.++..|+..
T Consensus 178 l~~h~~~~v~~viGG~~~~~e~~kl~k~~niliATPGRLlDHlqNt~~f~~r~~k~lvlDEADrlLd~GF~~di~~Ii~~ 257 (543)
T KOG0342|consen 178 LKYHESITVGIVIGGNNFSVEADKLVKGCNILIATPGRLLDHLQNTSGFLFRNLKCLVLDEADRLLDIGFEEDVEQIIKI 257 (543)
T ss_pred HhhCCCcceEEEeCCccchHHHHHhhccccEEEeCCchHHhHhhcCCcchhhccceeEeecchhhhhcccHHHHHHHHHh
Confidence 98886789999999999988888888899999999999999999988888899999999999999999999999988887
Q ss_pred HhhcCCCceEEEEEeecCCCccccccccccccccccchhhhhhhhhhhccchhhHHHHHHHHhhcCcCceEEEEecccch
Q psy15524 161 LKKQKPQFQSILLSATLTPATCWCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLTP 240 (930)
Q Consensus 161 l~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~de~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~sat~~~ 240 (930)
++.. +|+++||||.++
T Consensus 258 lpk~----------------------------------------------------------------rqt~LFSAT~~~ 273 (543)
T KOG0342|consen 258 LPKQ----------------------------------------------------------------RQTLLFSATQPS 273 (543)
T ss_pred cccc----------------------------------------------------------------ceeeEeeCCCcH
Confidence 7533 399999999999
Q ss_pred HHHHhhhcccc-CCeeeccCCcccccCCCcccccCCCceeEEEEcCcchhHHHHHHHHhhhccccccCCcceEEEEEecc
Q psy15524 241 AVQRLAGMTLQ-NPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQ 319 (930)
Q Consensus 241 ~~~~l~~~~l~-~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~iVF~~s~ 319 (930)
.++.+++..+. +++.+...+.... .....+.|-|++++...+...+..+|.+ +....++||||+|.
T Consensus 274 kV~~l~~~~L~~d~~~v~~~d~~~~-------~The~l~Qgyvv~~~~~~f~ll~~~LKk------~~~~~KiiVF~sT~ 340 (543)
T KOG0342|consen 274 KVKDLARGALKRDPVFVNVDDGGER-------ETHERLEQGYVVAPSDSRFSLLYTFLKK------NIKRYKIIVFFSTC 340 (543)
T ss_pred HHHHHHHHhhcCCceEeecCCCCCc-------chhhcccceEEeccccchHHHHHHHHHH------hcCCceEEEEechh
Confidence 99999987765 4788766655422 2346799999999988889999999954 22338999999999
Q ss_pred cchhhhHHHHhh
Q psy15524 320 DMADYHTELLST 331 (930)
Q Consensus 320 ~~~~~l~~~L~~ 331 (930)
..+..+++.|+.
T Consensus 341 ~~vk~~~~lL~~ 352 (543)
T KOG0342|consen 341 MSVKFHAELLNY 352 (543)
T ss_pred hHHHHHHHHHhh
Confidence 999999999983
|
|
| >KOG0951|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-33 Score=320.25 Aligned_cols=341 Identities=18% Similarity=0.216 Sum_probs=235.6
Q ss_pred CCCCHHHHHhHHhhhcCCc-EEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHHHHhhc
Q psy15524 413 TQVTTVQQLSIQPILDGGD-VLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCK 491 (930)
Q Consensus 413 ~~~~~iQ~~~i~~il~~~d-~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~ 491 (930)
...+|+|.++++.+.+.+| +++.||+|||||.|+.++++. +....++++++|..+.+..++..|.+.++
T Consensus 1142 ~~~n~iqtqVf~~~y~~nd~v~vga~~gsgkt~~ae~a~l~----------~~~~~~~vyi~p~~~i~~~~~~~w~~~f~ 1211 (1674)
T KOG0951|consen 1142 QDFNPIQTQVFTSLYNTNDNVLVGAPNGSGKTACAELALLR----------PDTIGRAVYIAPLEEIADEQYRDWEKKFS 1211 (1674)
T ss_pred cccCCceEEEEeeeecccceEEEecCCCCchhHHHHHHhcC----------CccceEEEEecchHHHHHHHHHHHHHhhc
Confidence 3458999999999998665 999999999999999998885 23467899999999999999999998887
Q ss_pred cCCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhccCCcccccceEEEEecchhhhhcCcHHH------HHH
Q psy15524 492 SFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERD------IAE 565 (930)
Q Consensus 492 ~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~l~~~g~~~~------l~~ 565 (930)
.........++|...... .+....+|+|+||++|..+ + ..+.+++.|.||+|.+.+.+ ++. +..
T Consensus 1212 ~~~G~~~~~l~ge~s~~l---kl~~~~~vii~tpe~~d~l-q-----~iQ~v~l~i~d~lh~igg~~-g~v~evi~S~r~ 1281 (1674)
T KOG0951|consen 1212 KLLGLRIVKLTGETSLDL---KLLQKGQVIISTPEQWDLL-Q-----SIQQVDLFIVDELHLIGGVY-GAVYEVICSMRY 1281 (1674)
T ss_pred cccCceEEecCCccccch---HHhhhcceEEechhHHHHH-h-----hhhhcceEeeehhhhhcccC-CceEEEEeeHHH
Confidence 776666666666654432 2345679999999999765 2 56789999999999887322 222 223
Q ss_pred HHHHHhhcCccceEEEEccccCHHHHHHHhhhcCCCEEEEccCCCCcccCccceecCCCceEEEEEcCc---hhhHHHHH
Q psy15524 566 FLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPP---KLRLVALA 642 (930)
Q Consensus 566 i~~~l~~~~~~~q~vl~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~ 642 (930)
|-..+. ...+++.+|..+.+. .++++. ...-.+..... ..|.++.-+...+.. ..+..++.
T Consensus 1282 ia~q~~---k~ir~v~ls~~lana-~d~ig~--s~~~v~Nf~p~----------~R~~Pl~i~i~~~~~~~~~~~~~am~ 1345 (1674)
T KOG0951|consen 1282 IASQLE---KKIRVVALSSSLANA-RDLIGA--SSSGVFNFSPS----------VRPVPLEIHIQSVDISHFESRMLAMT 1345 (1674)
T ss_pred HHHHHH---hheeEEEeehhhccc-hhhccc--cccceeecCcc----------cCCCceeEEEEEeccchhHHHHHHhh
Confidence 333333 378999999988763 333222 11111111111 122333333322222 22322222
Q ss_pred H----HHHhhccCCCcCCCceEEEEecchhhHHHHHHHH-----------------------hhhcCCCceEEEecCCCC
Q psy15524 643 S----FILGKCQNVNEDEESKMLVFMATQDMADYHTELL-----------------------STVLGENIAFFKLHGSMS 695 (930)
Q Consensus 643 ~----~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l-----------------------~~~~~~~~~~~~lhg~~~ 695 (930)
. .+..+.. .+++.+||+++++.+..++.-+ ++.+..|+. |-+++
T Consensus 1346 ~~~~~ai~~~a~-----~~k~~~vf~p~rk~~~~~a~~~~~~s~~~~~~~l~~~~e~~~~~l~e~l~~gvg----~e~~s 1416 (1674)
T KOG0951|consen 1346 KPTYTAIVRHAG-----NRKPAIVFLPTRKHARLVAVDLVTFSHADEPDYLLSELEECDETLRESLKHGVG----HEGLS 1416 (1674)
T ss_pred hhHHHHHHHHhc-----CCCCeEEEeccchhhhhhhhccchhhccCcHHHHHHHHhcchHhhhhccccccc----ccccC
Confidence 2 2222221 2789999999999997765322 121222333 88999
Q ss_pred HHHHHHHHHHhhcCCCcEEEeccccccccCCCCccEEEE----ec------CCCChhhHHhhhcccccCCCCceEEEEeC
Q psy15524 696 QSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQ----YT------APSSSTDYVHRVGRTARVGHEGSSLLFLI 765 (930)
Q Consensus 696 ~~~R~~v~~~F~~~~~~vLv~T~~~~~GlDip~v~~VI~----~~------~p~s~~~y~qr~GRagR~g~~g~~~~~~~ 765 (930)
..+...+-..|..|.+.|+|...- .+|+-...--+|+. || .+.+..+.+|++|+|.| .|.|++++.
T Consensus 1417 ~~d~~iv~~l~e~g~i~v~v~s~~-~~~~~~~~~lVvvmgt~~ydg~e~~~~~y~i~~ll~m~G~a~~---~~k~vi~~~ 1492 (1674)
T KOG0951|consen 1417 SNDQEIVQQLFEAGAIQVCVMSRD-CYGTKLKAHLVVVMGTQYYDGKEHSYEDYPIAELLQMVGLASG---AGKCVIMCH 1492 (1674)
T ss_pred cchHHHHHHHHhcCcEEEEEEEcc-cccccccceEEEEecceeecccccccccCchhHHHHHhhhhcC---CccEEEEec
Confidence 999999999999999999988776 88888866555553 22 56678999999999998 679999999
Q ss_pred cccHHHHHHHHhcCCccchhchHHHHHhhhhhhccCc
Q psy15524 766 PSEVKLVEELQNRRIRIEEIKLKDCLQNLLSVKMEGD 802 (930)
Q Consensus 766 ~~e~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~ 802 (930)
.....|+++.....+|+++.--.-+.+.+++++..+.
T Consensus 1493 ~~~k~yykkfl~e~lPves~lq~~lhd~~n~ei~~~t 1529 (1674)
T KOG0951|consen 1493 TPKKEYYKKFLYEPLPVESHLQHCLHDNFNAEIVTKT 1529 (1674)
T ss_pred CchHHHHHHhccCcCchHHHHHHHHHhhhhHHHHHHH
Confidence 9999999999988888877654455555555444333
|
|
| >KOG0343|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-36 Score=313.84 Aligned_cols=251 Identities=36% Similarity=0.600 Sum_probs=222.6
Q ss_pred CCccCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHHh
Q psy15524 2 NITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLC 81 (930)
Q Consensus 2 g~~~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~ 81 (930)
+|-.+|.+|+.+||.++.|+|+|..|.||||||++|++|+++.+.+. ++...+|.-+|||+||||||.|+++.+.+.+
T Consensus 88 ~fv~~teiQ~~~Ip~aL~G~DvlGAAkTGSGKTLAFlvPvlE~L~r~--kWs~~DGlGalIISPTRELA~QtFevL~kvg 165 (758)
T KOG0343|consen 88 KFVKMTEIQRDTIPMALQGHDVLGAAKTGSGKTLAFLVPVLEALYRL--KWSPTDGLGALIISPTRELALQTFEVLNKVG 165 (758)
T ss_pred CCccHHHHHHhhcchhccCcccccccccCCCceeeehHHHHHHHHHc--CCCCCCCceeEEecchHHHHHHHHHHHHHHh
Confidence 57889999999999999999999999999999999999999999763 4445678889999999999999999999999
Q ss_pred hhcCCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCcHHHHHHHHHHH
Q psy15524 82 KSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEIL 161 (930)
Q Consensus 82 ~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~~~~~~~i~~~l 161 (930)
.+.. +..+++.||.+......++. +..|+||||+||++++..+..+...++.++|+||||+|+++||...+..|++.+
T Consensus 166 k~h~-fSaGLiiGG~~~k~E~eRi~-~mNILVCTPGRLLQHmde~~~f~t~~lQmLvLDEADR~LDMGFk~tL~~Ii~~l 243 (758)
T KOG0343|consen 166 KHHD-FSAGLIIGGKDVKFELERIS-QMNILVCTPGRLLQHMDENPNFSTSNLQMLVLDEADRMLDMGFKKTLNAIIENL 243 (758)
T ss_pred hccc-cccceeecCchhHHHHHhhh-cCCeEEechHHHHHHhhhcCCCCCCcceEEEeccHHHHHHHhHHHHHHHHHHhC
Confidence 8655 88899999998776666554 589999999999999998888889999999999999999999998888888777
Q ss_pred hhcCCCceEEEEEeecCCCccccccccccccccccchhhhhhhhhhhccchhhHHHHHHHHhhcCcCceEEEEecccchH
Q psy15524 162 KKQKPQFQSILLSATLTPATCWCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLTPA 241 (930)
Q Consensus 162 ~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~de~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~sat~~~~ 241 (930)
+..+ |+++||||-+..
T Consensus 244 P~~R----------------------------------------------------------------QTLLFSATqt~s 259 (758)
T KOG0343|consen 244 PKKR----------------------------------------------------------------QTLLFSATQTKS 259 (758)
T ss_pred Chhh----------------------------------------------------------------eeeeeecccchh
Confidence 5443 999999999999
Q ss_pred HHHhhhccccCCeeeccCCcccccCCCcccccCCCceeEEEEcCcchhHHHHHHHHhhhccccccCCcceEEEEEecccc
Q psy15524 242 VQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDM 321 (930)
Q Consensus 242 ~~~l~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~iVF~~s~~~ 321 (930)
+..+++.-+.+|.+|.+.... ..+.|+++.|.|+.++..+|+..|..++ ......++|||.+|.++
T Consensus 260 vkdLaRLsL~dP~~vsvhe~a-------~~atP~~L~Q~y~~v~l~~Ki~~L~sFI-------~shlk~K~iVF~SscKq 325 (758)
T KOG0343|consen 260 VKDLARLSLKDPVYVSVHENA-------VAATPSNLQQSYVIVPLEDKIDMLWSFI-------KSHLKKKSIVFLSSCKQ 325 (758)
T ss_pred HHHHHHhhcCCCcEEEEeccc-------cccChhhhhheEEEEehhhHHHHHHHHH-------HhccccceEEEEehhhH
Confidence 999999999999999877432 2257999999999999999999999999 55677899999999999
Q ss_pred hhhhHHHHhhhhh
Q psy15524 322 ADYHTELLSTKKK 334 (930)
Q Consensus 322 ~~~l~~~L~~~~~ 334 (930)
+..+++.++....
T Consensus 326 vkf~~e~F~rlrp 338 (758)
T KOG0343|consen 326 VKFLYEAFCRLRP 338 (758)
T ss_pred HHHHHHHHHhcCC
Confidence 9999999987543
|
|
| >COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-35 Score=333.55 Aligned_cols=250 Identities=34% Similarity=0.538 Sum_probs=216.2
Q ss_pred CCCccCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHH
Q psy15524 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKL 80 (930)
Q Consensus 1 ~g~~~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~ 80 (930)
+||+.|||+|.++||.++.|+|++++|+||||||++|.+|+++.+... . ......+||++||||||.|+++.+..+
T Consensus 47 ~gf~~pt~IQ~~~IP~~l~g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~-~---~~~~~~aLil~PTRELA~Qi~~~~~~~ 122 (513)
T COG0513 47 LGFEEPTPIQLAAIPLILAGRDVLGQAQTGTGKTAAFLLPLLQKILKS-V---ERKYVSALILAPTRELAVQIAEELRKL 122 (513)
T ss_pred cCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhcc-c---ccCCCceEEECCCHHHHHHHHHHHHHH
Confidence 599999999999999999999999999999999999999999997642 0 011111999999999999999999999
Q ss_pred hhhcCCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCcHHHHHHHHHH
Q psy15524 81 CKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEI 160 (930)
Q Consensus 81 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~~~~~~~i~~~ 160 (930)
......+.+..++||.....+...+..++||+||||+|+++++.+ +.+.+++++++|+||||.|++.||.+++..|+..
T Consensus 123 ~~~~~~~~~~~i~GG~~~~~q~~~l~~~~~ivVaTPGRllD~i~~-~~l~l~~v~~lVlDEADrmLd~Gf~~~i~~I~~~ 201 (513)
T COG0513 123 GKNLGGLRVAVVYGGVSIRKQIEALKRGVDIVVATPGRLLDLIKR-GKLDLSGVETLVLDEADRMLDMGFIDDIEKILKA 201 (513)
T ss_pred HhhcCCccEEEEECCCCHHHHHHHHhcCCCEEEECccHHHHHHHc-CCcchhhcCEEEeccHhhhhcCCCHHHHHHHHHh
Confidence 987745778899999999999988988999999999999999987 5888999999999999999999999998888876
Q ss_pred HhhcCCCceEEEEEeecCCCccccccccccccccccchhhhhhhhhhhccchhhHHHHHHHHhhcCcCceEEEEecccch
Q psy15524 161 LKKQKPQFQSILLSATLTPATCWCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLTP 240 (930)
Q Consensus 161 l~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~de~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~sat~~~ 240 (930)
++. .+|+++||||++.
T Consensus 202 ~p~----------------------------------------------------------------~~qtllfSAT~~~ 217 (513)
T COG0513 202 LPP----------------------------------------------------------------DRQTLLFSATMPD 217 (513)
T ss_pred CCc----------------------------------------------------------------ccEEEEEecCCCH
Confidence 643 2399999999999
Q ss_pred HHHHhhhccccCCeeeccCCcccccCCCcccccCCCceeEEEEcCcch-hHHHHHHHHhhhccccccCCcceEEEEEecc
Q psy15524 241 AVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKL-RLVALASFILGKCQNVNEDEESKMLVFMATQ 319 (930)
Q Consensus 241 ~~~~l~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-k~~~l~~~l~~~~~~~~~~~~~~~iVF~~s~ 319 (930)
.+..++..++.+|..+.+..... ......+.|.++.+.... |...|..++ ......++||||+|+
T Consensus 218 ~i~~l~~~~l~~p~~i~v~~~~~-------~~~~~~i~q~~~~v~~~~~k~~~L~~ll-------~~~~~~~~IVF~~tk 283 (513)
T COG0513 218 DIRELARRYLNDPVEIEVSVEKL-------ERTLKKIKQFYLEVESEEEKLELLLKLL-------KDEDEGRVIVFVRTK 283 (513)
T ss_pred HHHHHHHHHccCCcEEEEccccc-------cccccCceEEEEEeCCHHHHHHHHHHHH-------hcCCCCeEEEEeCcH
Confidence 99999999999998777663221 124678999999998766 999999999 344555799999999
Q ss_pred cchhhhHHHHhhhh
Q psy15524 320 DMADYHTELLSTKK 333 (930)
Q Consensus 320 ~~~~~l~~~L~~~~ 333 (930)
..|+.++..|...|
T Consensus 284 ~~~~~l~~~l~~~g 297 (513)
T COG0513 284 RLVEELAESLRKRG 297 (513)
T ss_pred HHHHHHHHHHHHCC
Confidence 99999999999877
|
|
| >PHA02558 uvsW UvsW helicase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-34 Score=332.66 Aligned_cols=315 Identities=17% Similarity=0.177 Sum_probs=216.3
Q ss_pred CCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHHHHhhc
Q psy15524 412 ITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCK 491 (930)
Q Consensus 412 ~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~ 491 (930)
...|+++|.++++.++.+++.++++|||+|||+++...+ ..+.. ....++|||+||++|+.|+.+.+.+++.
T Consensus 112 ~~~~r~~Q~~av~~~l~~~~~il~apTGsGKT~i~~~l~-~~~~~-------~~~~~vLilvpt~eL~~Q~~~~l~~~~~ 183 (501)
T PHA02558 112 KIEPHWYQYDAVYEGLKNNRRLLNLPTSAGKSLIQYLLS-RYYLE-------NYEGKVLIIVPTTSLVTQMIDDFVDYRL 183 (501)
T ss_pred cCCCCHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHH-HHHHh-------cCCCeEEEEECcHHHHHHHHHHHHHhcc
Confidence 458999999999999999999999999999999765432 22222 1234799999999999999999998764
Q ss_pred cCCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhccCCcccccceEEEEecchhhhhcCcHHHHHHHHHHHh
Q psy15524 492 SFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILK 571 (930)
Q Consensus 492 ~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~l~~~g~~~~l~~i~~~l~ 571 (930)
... .....+.||.... .+.+|+|+||+++.+... ..+++++++|+||||++.... +..++..++
T Consensus 184 ~~~-~~~~~i~~g~~~~-------~~~~I~VaT~qsl~~~~~----~~~~~~~~iIvDEaH~~~~~~----~~~il~~~~ 247 (501)
T PHA02558 184 FPR-EAMHKIYSGTAKD-------TDAPIVVSTWQSAVKQPK----EWFDQFGMVIVDECHLFTGKS----LTSIITKLD 247 (501)
T ss_pred ccc-cceeEEecCcccC-------CCCCEEEeeHHHHhhchh----hhccccCEEEEEchhcccchh----HHHHHHhhh
Confidence 322 2233445554321 357999999999876432 236789999999999997644 445555553
Q ss_pred hcCccceEEEEccccCHHHHHHHh-hhcCCCEEEEccCCCCc--ccCc--c--ceec--CC----Cc-eEEE-----EEc
Q psy15524 572 KQKPQFQSILLSATLTPAVQRLAG-MTLQNPIQIDAADSTDI--HNTT--D--SLVI--PD----SL-KQHF-----IVT 632 (930)
Q Consensus 572 ~~~~~~q~vl~SAT~~~~~~~l~~-~~~~~~~~i~~~~~~~~--~~~~--~--~~~~--~~----~~-~~~~-----~~~ 632 (930)
. ..++++||||+.+....... ..+-.|+...+...... .... . .... +. .. ...| ...
T Consensus 248 ~---~~~~lGLTATp~~~~~~~~~~~~~fG~i~~~v~~~~li~~g~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~ 324 (501)
T PHA02558 248 N---CKFKFGLTGSLRDGKANILQYVGLFGDIFKPVTTSQLMEEGQVTDLKINSIFLRYPDEDRVKLKGEDYQEEIKYIT 324 (501)
T ss_pred c---cceEEEEeccCCCccccHHHHHHhhCCceEEecHHHHHhCCCcCCceEEEEeccCCHHHhhhhcccchHHHHHHHh
Confidence 2 56899999999753221110 00111222211100000 0000 0 0000 00 00 0000 112
Q ss_pred CchhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHHHHHHHHHHhhcCCCc
Q psy15524 633 PPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSVKSG 712 (930)
Q Consensus 633 ~~~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~v~~~F~~~~~~ 712 (930)
....|...+...+..... .+.+++|||.+.++++.+++.|... +..+..+||+|++++|..+++.|++|+..
T Consensus 325 ~~~~Rn~~I~~~~~~~~~-----~~~~~lV~~~~~~h~~~L~~~L~~~---g~~v~~i~G~~~~~eR~~i~~~~~~~~~~ 396 (501)
T PHA02558 325 SHTKRNKWIANLALKLAK-----KGENTFVMFKYVEHGKPLYEMLKKV---YDKVYYVSGEVDTEDRNEMKKIAEGGKGI 396 (501)
T ss_pred ccHHHHHHHHHHHHHHHh-----cCCCEEEEEEEHHHHHHHHHHHHHc---CCCEEEEeCCCCHHHHHHHHHHHhCCCCe
Confidence 223344444444333221 2568899999999999999999885 77899999999999999999999999999
Q ss_pred EEEec-cccccccCCCCccEEEEecCCCChhhHHhhhcccccCCCCceEE
Q psy15524 713 VLICT-DVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSL 761 (930)
Q Consensus 713 vLv~T-~~~~~GlDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~g~~~ 761 (930)
||||| +++++|+|+|++++||.++++.+...|+||+||++|.+..+...
T Consensus 397 vLvaT~~~l~eG~Dip~ld~vIl~~p~~s~~~~~QriGR~~R~~~~K~~~ 446 (501)
T PHA02558 397 IIVASYGVFSTGISIKNLHHVIFAHPSKSKIIVLQSIGRVLRKHGSKSIA 446 (501)
T ss_pred EEEEEcceeccccccccccEEEEecCCcchhhhhhhhhccccCCCCCceE
Confidence 99998 99999999999999999999999999999999999988655433
|
|
| >COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-33 Score=294.98 Aligned_cols=338 Identities=22% Similarity=0.282 Sum_probs=237.3
Q ss_pred CCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHHHHhh
Q psy15524 411 NITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLC 490 (930)
Q Consensus 411 ~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~ 490 (930)
+.-+++.+|.......+.+ |.+++.|||-|||+.+++-+...+.. .+| ++|+++||+-|+.|.++.+.+.+
T Consensus 12 ~~ie~R~YQ~~i~a~al~~-NtLvvlPTGLGKT~IA~~V~~~~l~~-------~~~-kvlfLAPTKPLV~Qh~~~~~~v~ 82 (542)
T COG1111 12 NTIEPRLYQLNIAAKALFK-NTLVVLPTGLGKTFIAAMVIANRLRW-------FGG-KVLFLAPTKPLVLQHAEFCRKVT 82 (542)
T ss_pred ccccHHHHHHHHHHHHhhc-CeEEEecCCccHHHHHHHHHHHHHHh-------cCC-eEEEecCCchHHHHHHHHHHHHh
Confidence 3446788898888777765 89999999999999998888888765 334 89999999999999999999988
Q ss_pred ccCCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhccCCcccccceEEEEecchhhhhcCcHHHHHHHHHHH
Q psy15524 491 KSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEIL 570 (930)
Q Consensus 491 ~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~l~~~g~~~~l~~i~~~l 570 (930)
.- +......++|... ..++...+...+|+|+||.-+.+-+.. +.++++++.++|+|||||-....-. ..+.+..
T Consensus 83 ~i-p~~~i~~ltGev~-p~~R~~~w~~~kVfvaTPQvveNDl~~-Grid~~dv~~lifDEAHRAvGnyAY---v~Va~~y 156 (542)
T COG1111 83 GI-PEDEIAALTGEVR-PEEREELWAKKKVFVATPQVVENDLKA-GRIDLDDVSLLIFDEAHRAVGNYAY---VFVAKEY 156 (542)
T ss_pred CC-ChhheeeecCCCC-hHHHHHHHhhCCEEEeccHHHHhHHhc-CccChHHceEEEechhhhccCcchH---HHHHHHH
Confidence 63 2233455666544 455666777899999999998777765 6788999999999999996533211 2222222
Q ss_pred hhcCccceEEEEccccCHHHHHHH---hhhcCCCEEEEccCCCCc-----------------------------------
Q psy15524 571 KKQKPQFQSILLSATLTPAVQRLA---GMTLQNPIQIDAADSTDI----------------------------------- 612 (930)
Q Consensus 571 ~~~~~~~q~vl~SAT~~~~~~~l~---~~~~~~~~~i~~~~~~~~----------------------------------- 612 (930)
-....++.++++|||+....+.+. ....-..+.+......+.
T Consensus 157 ~~~~k~~~ilgLTASPGs~~ekI~eV~~nLgIe~vevrTE~d~DV~~Yv~~~kve~ikV~lp~e~~~ir~~l~~~l~~~L 236 (542)
T COG1111 157 LRSAKNPLILGLTASPGSDLEKIQEVVENLGIEKVEVRTEEDPDVRPYVKKIKVEWIKVDLPEEIKEIRDLLRDALKPRL 236 (542)
T ss_pred HHhccCceEEEEecCCCCCHHHHHHHHHhCCcceEEEecCCCccHHHhhccceeEEEeccCcHHHHHHHHHHHHHHHHHH
Confidence 223447889999999976543332 222112122211111000
Q ss_pred ---------ccCc-----c-------ceecCCC-----------------------------------------------
Q psy15524 613 ---------HNTT-----D-------SLVIPDS----------------------------------------------- 624 (930)
Q Consensus 613 ---------~~~~-----~-------~~~~~~~----------------------------------------------- 624 (930)
.... + ...+...
T Consensus 237 k~L~~~g~~~~~~~~~~kdl~~~~~~~~~~a~~~~~~~~~~l~~~a~~~kl~~a~elletqGi~~~~~Yl~~l~e~~~~~ 316 (542)
T COG1111 237 KPLKELGVIESSSPVSKKDLLELRQIRLIMAKNEDSDKFRLLSVLAEAIKLAHALELLETQGIRPFYQYLEKLEEEATKG 316 (542)
T ss_pred HHHHHcCceeccCcccHhHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHhccc
Confidence 0000 0 0000000
Q ss_pred -c-------------------eEEEEEcCchhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCC
Q psy15524 625 -L-------------------KQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGEN 684 (930)
Q Consensus 625 -~-------------------~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~ 684 (930)
. ...-.....+.|+..+..++....... ++.++|||++.+++++.+...|.+....
T Consensus 317 ~sk~a~~l~~d~~~~~al~~~~~~~~~~v~HPKl~~l~eilke~~~k~---~~~RvIVFT~yRdTae~i~~~L~~~~~~- 392 (542)
T COG1111 317 GSKAAKSLLADPYFKRALRLLIRADESGVEHPKLEKLREILKEQLEKN---GDSRVIVFTEYRDTAEEIVNFLKKIGIK- 392 (542)
T ss_pred chHHHHHHhcChhhHHHHHHHHHhccccCCCccHHHHHHHHHHHHhcC---CCceEEEEehhHhHHHHHHHHHHhcCCc-
Confidence 0 000001112334555555555544332 2689999999999999999999886432
Q ss_pred ceEEEe--------cCCCCHHHHHHHHHHhhcCCCcEEEeccccccccCCCCccEEEEecCCCChhhHHhhhcccccCCC
Q psy15524 685 IAFFKL--------HGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGH 756 (930)
Q Consensus 685 ~~~~~l--------hg~~~~~~R~~v~~~F~~~~~~vLv~T~~~~~GlDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~ 756 (930)
.. ..+ ..||+|.++.+++++|++|..+|||||+++++|+|+|.+|+||.|++-.|...++||.|||||. +
T Consensus 393 ~~-~rFiGQa~r~~~~GMsQkeQ~eiI~~Fr~Ge~nVLVaTSVgEEGLDIp~vDlVifYEpvpSeIR~IQR~GRTGR~-r 470 (542)
T COG1111 393 AR-VRFIGQASREGDKGMSQKEQKEIIDQFRKGEYNVLVATSVGEEGLDIPEVDLVIFYEPVPSEIRSIQRKGRTGRK-R 470 (542)
T ss_pred ce-eEEeeccccccccccCHHHHHHHHHHHhcCCceEEEEcccccccCCCCcccEEEEecCCcHHHHHHHhhCccccC-C
Confidence 21 122 2479999999999999999999999999999999999999999999999999999999999995 8
Q ss_pred CceEEEEeCcccH
Q psy15524 757 EGSSLLFLIPSEV 769 (930)
Q Consensus 757 ~g~~~~~~~~~e~ 769 (930)
.|..+++++....
T Consensus 471 ~Grv~vLvt~gtr 483 (542)
T COG1111 471 KGRVVVLVTEGTR 483 (542)
T ss_pred CCeEEEEEecCch
Confidence 9999999998733
|
|
| >KOG0351|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-34 Score=336.98 Aligned_cols=341 Identities=21% Similarity=0.272 Sum_probs=262.0
Q ss_pred HHHHHHHHhcCCCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHH
Q psy15524 400 PFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELA 479 (930)
Q Consensus 400 ~~~~~~l~~~~~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa 479 (930)
+.....+...||...++|-|.++|..++.|+|++|.+|||.||++||.+|++- .+...|||+|..+|+
T Consensus 250 ~~~~~~l~~~Fg~~~FR~~Q~eaI~~~l~Gkd~fvlmpTG~GKSLCYQlPA~l------------~~gitvVISPL~SLm 317 (941)
T KOG0351|consen 250 KELELLLKEVFGHKGFRPNQLEAINATLSGKDCFVLMPTGGGKSLCYQLPALL------------LGGVTVVISPLISLM 317 (941)
T ss_pred hHHHHHHHHHhccccCChhHHHHHHHHHcCCceEEEeecCCceeeEeeccccc------------cCCceEEeccHHHHH
Confidence 34667777789999999999999999999999999999999999999999982 134789999999999
Q ss_pred HHHHHHHHHhhccCCCcceEEEeCCCchH---HHHHHHhcC---CcEEEECchhHHHhhhcc-CCccccc---ceEEEEe
Q psy15524 480 LQTLEIFTKLCKSFTWIVPSWLTGGEKMK---SEKARIRKG---ISILVATPGRLLDHCKHT-ETLKFSK---VEHLVLD 549 (930)
Q Consensus 480 ~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~---~~~~~~~~~---~~Ilv~Tp~rl~~~l~~~-~~~~~~~---l~~lVlD 549 (930)
..+...+... .+....+.++.... ...+.+..+ ++|++.||+++...-.-. ....+.. +.++|+|
T Consensus 318 ~DQv~~L~~~-----~I~a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vID 392 (941)
T KOG0351|consen 318 QDQVTHLSKK-----GIPACFLSSIQTAAERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFVID 392 (941)
T ss_pred HHHHHhhhhc-----CcceeeccccccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEec
Confidence 8877766332 24556666666554 333444443 789999999885432211 1112333 8999999
Q ss_pred cchhhhhcC--cHHHHHHHHHHHhhcCccceEEEEccccCHHHHHHH--hhhcCCCEEEEccCCCCcccCccceecCCCc
Q psy15524 550 EADRILDQG--YERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLA--GMTLQNPIQIDAADSTDIHNTTDSLVIPDSL 625 (930)
Q Consensus 550 Eah~l~~~g--~~~~l~~i~~~l~~~~~~~q~vl~SAT~~~~~~~l~--~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 625 (930)
|||++..|| |++.+..+.....+. +...++++|||.+..+..-+ ...+.+|..+.... .+.++
T Consensus 393 EAHCVSqWgHdFRp~Yk~l~~l~~~~-~~vP~iALTATAT~~v~~DIi~~L~l~~~~~~~~sf------------nR~NL 459 (941)
T KOG0351|consen 393 EAHCVSQWGHDFRPSYKRLGLLRIRF-PGVPFIALTATATERVREDVIRSLGLRNPELFKSSF------------NRPNL 459 (941)
T ss_pred HHHHhhhhcccccHHHHHHHHHHhhC-CCCCeEEeehhccHHHHHHHHHHhCCCCcceecccC------------CCCCc
Confidence 999999999 778777765555443 45899999999998876533 33455665433211 11223
Q ss_pred eEEEEEcCchhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHHHHHHHHHH
Q psy15524 626 KQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKT 705 (930)
Q Consensus 626 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~v~~~ 705 (930)
...+..-........+...+.... +....||||.++.+|+.++..|... ++....||++|+..+|..|.++
T Consensus 460 ~yeV~~k~~~~~~~~~~~~~~~~~------~~~s~IIYC~sr~~ce~vs~~L~~~---~~~a~~YHAGl~~~~R~~Vq~~ 530 (941)
T KOG0351|consen 460 KYEVSPKTDKDALLDILEESKLRH------PDQSGIIYCLSRKECEQVSAVLRSL---GKSAAFYHAGLPPKERETVQKA 530 (941)
T ss_pred eEEEEeccCccchHHHHHHhhhcC------CCCCeEEEeCCcchHHHHHHHHHHh---chhhHhhhcCCCHHHHHHHHHH
Confidence 222222221233333333333322 2779999999999999999999986 6778888999999999999999
Q ss_pred hhcCCCcEEEeccccccccCCCCccEEEEecCCCChhhHHhhhcccccCCCCceEEEEeCcccHHHHHHHHhcC
Q psy15524 706 FRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPSEVKLVEELQNRR 779 (930)
Q Consensus 706 F~~~~~~vLv~T~~~~~GlDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~e~~~~~~l~~~~ 779 (930)
|..++.+|+|||=++++|||.|+|+.||||..|.+.+.|+|.+|||||.|....|++|+...+..-++.+...+
T Consensus 531 w~~~~~~VivATVAFGMGIdK~DVR~ViH~~lPks~E~YYQE~GRAGRDG~~s~C~l~y~~~D~~~l~~ll~s~ 604 (941)
T KOG0351|consen 531 WMSDKIRVIVATVAFGMGIDKPDVRFVIHYSLPKSFEGYYQEAGRAGRDGLPSSCVLLYGYADISELRRLLTSG 604 (941)
T ss_pred HhcCCCeEEEEEeeccCCCCCCceeEEEECCCchhHHHHHHhccccCcCCCcceeEEecchhHHHHHHHHHHcc
Confidence 99999999999999999999999999999999999999999999999999999999999999988888876655
|
|
| >KOG0346|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-34 Score=296.74 Aligned_cols=265 Identities=29% Similarity=0.360 Sum_probs=226.9
Q ss_pred CCCccCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHH
Q psy15524 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKL 80 (930)
Q Consensus 1 ~g~~~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~ 80 (930)
+||+.||-+|+.|||.+++|+|++..|.||||||.+|++|+++.+...+.......++.++||+||+|||+|++..+.++
T Consensus 37 lG~ekpTlIQs~aIplaLEgKDvvarArTGSGKT~AYliPllqkll~~k~t~~~e~~~sa~iLvPTkEL~qQvy~viekL 116 (569)
T KOG0346|consen 37 LGWEKPTLIQSSAIPLALEGKDVVARARTGSGKTAAYLIPLLQKLLAEKKTNDGEQGPSAVILVPTKELAQQVYKVIEKL 116 (569)
T ss_pred hCcCCcchhhhcccchhhcCcceeeeeccCCCchHHHHHHHHHHHHHhhhcccccccceeEEEechHHHHHHHHHHHHHH
Confidence 59999999999999999999999999999999999999999999988665544567889999999999999999999999
Q ss_pred hhhcC-CceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCcHHHHHHHHH
Q psy15524 81 CKSFT-WIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLE 159 (930)
Q Consensus 81 ~~~~~-~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~~~~~~~i~~ 159 (930)
...+. .+....+..+.+.......+...++|+|+||++++.++.......+..++++|+||||.++..||+.++..+..
T Consensus 117 ~~~c~k~lr~~nl~s~~sdsv~~~~L~d~pdIvV~TP~~ll~~~~~~~~~~~~~l~~LVvDEADLllsfGYeedlk~l~~ 196 (569)
T KOG0346|consen 117 VEYCSKDLRAINLASSMSDSVNSVALMDLPDIVVATPAKLLRHLAAGVLEYLDSLSFLVVDEADLLLSFGYEEDLKKLRS 196 (569)
T ss_pred HHHHHHhhhhhhhhcccchHHHHHHHccCCCeEEeChHHHHHHHhhccchhhhheeeEEechhhhhhhcccHHHHHHHHH
Confidence 88776 45555566566666667888899999999999999999875557789999999999999999999999988887
Q ss_pred HHhhcCCCceEEEEEeecCCCccccccccccccccccchhhhhhhhhhhccchhhHHHHHHHHhhcCcCceEEEEecccc
Q psy15524 160 ILKKQKPQFQSILLSATLTPATCWCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLT 239 (930)
Q Consensus 160 ~l~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~de~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~sat~~ 239 (930)
.++... |.+++|||++
T Consensus 197 ~LPr~~----------------------------------------------------------------Q~~LmSATl~ 212 (569)
T KOG0346|consen 197 HLPRIY----------------------------------------------------------------QCFLMSATLS 212 (569)
T ss_pred hCCchh----------------------------------------------------------------hheeehhhhh
Confidence 776433 8888888898
Q ss_pred hHHHHhhhccccCCeeeccCCcccccCCCcccccCCCceeEEEEcCcchhHHHHHHHHhhhccccccCCcceEEEEEecc
Q psy15524 240 PAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQ 319 (930)
Q Consensus 240 ~~~~~l~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~iVF~~s~ 319 (930)
..+..+...++++|+++...+.+. ..++.+.|+++.|++.+|...+..++.= .--.++.|||+||.
T Consensus 213 dDv~~LKkL~l~nPviLkl~e~el--------~~~dqL~Qy~v~cse~DKflllyallKL------~LI~gKsliFVNtI 278 (569)
T KOG0346|consen 213 DDVQALKKLFLHNPVILKLTEGEL--------PNPDQLTQYQVKCSEEDKFLLLYALLKL------RLIRGKSLIFVNTI 278 (569)
T ss_pred hHHHHHHHHhccCCeEEEeccccC--------CCcccceEEEEEeccchhHHHHHHHHHH------HHhcCceEEEEech
Confidence 999999999999999987776653 3468899999999999999988888731 22347999999999
Q ss_pred cchhhhHHHHhhhhhhhhhcccCC
Q psy15524 320 DMADYHTELLSTKKKIKKLKEYNI 343 (930)
Q Consensus 320 ~~~~~l~~~L~~~~~~k~~~~~~~ 343 (930)
+.|..+--.|...|-.....+...
T Consensus 279 dr~YrLkLfLeqFGiksciLNseL 302 (569)
T KOG0346|consen 279 DRCYRLKLFLEQFGIKSCILNSEL 302 (569)
T ss_pred hhhHHHHHHHHHhCcHhhhhcccc
Confidence 999999999998887776654443
|
|
| >KOG0951|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-33 Score=321.19 Aligned_cols=390 Identities=20% Similarity=0.237 Sum_probs=289.1
Q ss_pred CCCCCCCCHHHHHHHHhcCCCCCCCHHHHHhHHhhhcCC-cEEEEccCCCchhHHhhHHHHHHHHhhCcc--cCCCCCee
Q psy15524 392 YEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGG-DVLVRSQTGSGKTLAYAIPIIQKLQEMRPK--ISRKDGIY 468 (930)
Q Consensus 392 f~~l~~l~~~~~~~l~~~~~~~~~~~iQ~~~i~~il~~~-d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~--~~~~~~~~ 468 (930)
|-.+..+|.+-..++ +|..+++++|.++.+..+.+. ++++|||||+|||..+++.+++.+...... .......+
T Consensus 290 l~~iselP~Wnq~aF---~g~~sLNrIQS~v~daAl~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fK 366 (1674)
T KOG0951|consen 290 LVKISELPKWNQPAF---FGKQSLNRIQSKVYDAALRGDENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFK 366 (1674)
T ss_pred eEeecCCcchhhhhc---ccchhhhHHHHHHHHHHhcCcCcEEEeccCCCCchHHHHHHHHHHHhcccccccceecccce
Confidence 334445666666665 588889999999999999875 699999999999999999999998764321 11123457
Q ss_pred EEEEccCHHHHHHHHHHHHHhhccCCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhccCCc-ccccceEEE
Q psy15524 469 AVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETL-KFSKVEHLV 547 (930)
Q Consensus 469 ~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~-~~~~l~~lV 547 (930)
++|++|+++|++.+...|.+.+..++.. +.-++|+.....+. ..+.+|+||||++++-..++.... ..+-++++|
T Consensus 367 IVYIAPmKaLvqE~VgsfSkRla~~GI~-V~ElTgD~~l~~~q---ieeTqVIV~TPEK~DiITRk~gdraY~qlvrLlI 442 (1674)
T KOG0951|consen 367 IVYIAPMKALVQEMVGSFSKRLAPLGIT-VLELTGDSQLGKEQ---IEETQVIVTTPEKWDIITRKSGDRAYEQLVRLLI 442 (1674)
T ss_pred EEEEeeHHHHHHHHHHHHHhhccccCcE-EEEecccccchhhh---hhcceeEEeccchhhhhhcccCchhHHHHHHHHh
Confidence 9999999999999999999999888754 45567765433221 246899999999998777764443 245689999
Q ss_pred EecchhhhhcCcHHHHHHHHHHHh----hcCccceEEEEccccCHHHHHHHhhhcCCCEEEEccCCCCcccCccceecCC
Q psy15524 548 LDEADRILDQGYERDIAEFLEILK----KQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPD 623 (930)
Q Consensus 548 lDEah~l~~~g~~~~l~~i~~~l~----~~~~~~q~vl~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 623 (930)
+||.|.+.| ..+..++.|+.+.. .....++.+++|||+|+- .+.+.....++.-+ ...+....|.
T Consensus 443 IDEIHLLhD-dRGpvLESIVaRt~r~ses~~e~~RlVGLSATLPNy-~DV~~Fl~v~~~gl---------f~fd~syRpv 511 (1674)
T KOG0951|consen 443 IDEIHLLHD-DRGPVLESIVARTFRRSESTEEGSRLVGLSATLPNY-EDVASFLRVDPEGL---------FYFDSSYRPV 511 (1674)
T ss_pred hhhhhhccc-ccchHHHHHHHHHHHHhhhcccCceeeeecccCCch-hhhHHHhccCcccc---------cccCcccCcC
Confidence 999997744 35666666665544 334578999999999983 22222222222111 1112235677
Q ss_pred CceEEEEEcCchh---hHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhh----------hcCC-------
Q psy15524 624 SLKQHFIVTPPKL---RLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLST----------VLGE------- 683 (930)
Q Consensus 624 ~~~~~~~~~~~~~---~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~----------~~~~------- 683 (930)
++.|.|+-+..+. ++.++.+...+....+. ..+++|||+.+++++-..++.++. ++.+
T Consensus 512 PL~qq~Igi~ek~~~~~~qamNe~~yeKVm~~a--gk~qVLVFVHsRkET~ktA~aIRd~~le~dtls~fmre~s~s~ei 589 (1674)
T KOG0951|consen 512 PLKQQYIGITEKKPLKRFQAMNEACYEKVLEHA--GKNQVLVFVHSRKETAKTARAIRDKALEEDTLSRFMREDSASREI 589 (1674)
T ss_pred CccceEeccccCCchHHHHHHHHHHHHHHHHhC--CCCcEEEEEEechHHHHHHHHHHHHHhhhhHHHHHHhcccchhhh
Confidence 8999988766554 44445544444332222 258999999999988777666552 1110
Q ss_pred -----------------CceEEEecCCCCHHHHHHHHHHhhcCCCcEEEeccccccccCCCCccEEEEe----c------
Q psy15524 684 -----------------NIAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQY----T------ 736 (930)
Q Consensus 684 -----------------~~~~~~lhg~~~~~~R~~v~~~F~~~~~~vLv~T~~~~~GlDip~v~~VI~~----~------ 736 (930)
...+..+|+||+..+|..+++.|+.|+++|||||..++||+|+|+.+++|-. |
T Consensus 590 lrtea~~~kn~dLkdLLpygfaIHhAGl~R~dR~~~EdLf~~g~iqvlvstatlawgvnlpahtViikgtqvy~pekg~w 669 (1674)
T KOG0951|consen 590 LRTEAGQAKNPDLKDLLPYGFAIHHAGLNRKDRELVEDLFADGHIQVLVSTATLAWGVNLPAHTVIIKGTQVYDPEKGRW 669 (1674)
T ss_pred hhhhhhcccChhHHHHhhccceeeccCCCcchHHHHHHHHhcCceeEEEeehhhhhhcCCCcceEEecCccccCcccCcc
Confidence 2345556999999999999999999999999999999999999999999953 3
Q ss_pred CCCChhhHHhhhcccccCCCC--ceEEEEeCcccHHHHHHHHhcCCccchhchHHHHHhhhhhhccC
Q psy15524 737 APSSSTDYVHRVGRTARVGHE--GSSLLFLIPSEVKLVEELQNRRIRIEEIKLKDCLQNLLSVKMEG 801 (930)
Q Consensus 737 ~p~s~~~y~qr~GRagR~g~~--g~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~ 801 (930)
.+.++.+.+||.|||||.+.+ |.++++...+|..|+..+.+..+|+++..+..+.+.+++++..|
T Consensus 670 ~elsp~dv~qmlgragrp~~D~~gegiiit~~se~qyyls~mn~qLpiesq~~~rl~d~lnaeiv~G 736 (1674)
T KOG0951|consen 670 TELSPLDVMQMLGRAGRPQYDTCGEGIIITDHSELQYYLSLMNQQLPIESQFVSRLADCLNAEIVLG 736 (1674)
T ss_pred ccCCHHHHHHHHhhcCCCccCcCCceeeccCchHhhhhHHhhhhcCCChHHHHHHhhhhhhhhhhcc
Confidence 334788999999999999875 67777777788889999999999999999999999999988877
|
|
| >KOG0333|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-34 Score=302.47 Aligned_cols=276 Identities=28% Similarity=0.423 Sum_probs=234.6
Q ss_pred CCCccCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcC---CCCCCeEEEEEcccHHHHHHHHHHH
Q psy15524 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKI---SRKDGIYAVIILPTRELALQTLEIF 77 (930)
Q Consensus 1 ~g~~~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~---~~~~~~~~lvl~P~~~L~~q~~~~~ 77 (930)
.||..|+|+|..|||..+..+|+|..|.||||||.+|++|++..+....+-. ....|+++++|+||++|++|+.++-
T Consensus 263 ~~y~eptpIqR~aipl~lQ~rD~igvaETgsGktaaf~ipLl~~IsslP~~~~~en~~~gpyaiilaptReLaqqIeeEt 342 (673)
T KOG0333|consen 263 PGYKEPTPIQRQAIPLGLQNRDPIGVAETGSGKTAAFLIPLLIWISSLPPMARLENNIEGPYAIILAPTRELAQQIEEET 342 (673)
T ss_pred cCCCCCchHHHhhccchhccCCeeeEEeccCCccccchhhHHHHHHcCCCcchhhhcccCceeeeechHHHHHHHHHHHH
Confidence 3899999999999999999999999999999999999999999997755322 2235899999999999999999999
Q ss_pred HHHhhhcCCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCcHHHHHHH
Q psy15524 78 TKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEF 157 (930)
Q Consensus 78 ~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~~~~~~~i 157 (930)
.+++..++ +.+..+.||...+++.-.+..+|+|+|+||++|++.+.+ ..+-++++.+||+||||.|+|.||++++..+
T Consensus 343 ~kf~~~lg-~r~vsvigg~s~EEq~fqls~gceiviatPgrLid~Len-r~lvl~qctyvvldeadrmiDmgfE~dv~~i 420 (673)
T KOG0333|consen 343 NKFGKPLG-IRTVSVIGGLSFEEQGFQLSMGCEIVIATPGRLIDSLEN-RYLVLNQCTYVVLDEADRMIDMGFEPDVQKI 420 (673)
T ss_pred HHhccccc-ceEEEEecccchhhhhhhhhccceeeecCchHHHHHHHH-HHHHhccCceEeccchhhhhcccccHHHHHH
Confidence 99998877 777778899999999888999999999999999999987 6777899999999999999999999999999
Q ss_pred HHHHhhcCCCceEEEEEeecCCCccccccccccccccccchhhhhhhhhhhccchhhHHHHHHHHhhcCcCceEEEEecc
Q psy15524 158 LEILKKQKPQFQSILLSATLTPATCWCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSAT 237 (930)
Q Consensus 158 ~~~l~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~de~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~sat 237 (930)
+..++..+.+ +. -||. +....+.......+..+|+++|+||
T Consensus 421 L~~mPssn~k---------~~---------------------tde~---------~~~~~~~~~~~~~k~yrqT~mftat 461 (673)
T KOG0333|consen 421 LEQMPSSNAK---------PD---------------------TDEK---------EGEERVRKNFSSSKKYRQTVMFTAT 461 (673)
T ss_pred HHhCCccccC---------CC---------------------ccch---------hhHHHHHhhcccccceeEEEEEecC
Confidence 9999765411 00 0111 1122333444444566899999999
Q ss_pred cchHHHHhhhccccCCeeeccCCcccccCCCcccccCCCceeEEEEcCcchhHHHHHHHHhhhccccccCCcceEEEEEe
Q psy15524 238 LTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMA 317 (930)
Q Consensus 238 ~~~~~~~l~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~iVF~~ 317 (930)
+++.++.+++.||++|+.+.+..... ..+.+.|.+..++..+|...|..+|. .....|+|||+|
T Consensus 462 m~p~verlar~ylr~pv~vtig~~gk---------~~~rveQ~v~m~~ed~k~kkL~eil~-------~~~~ppiIIFvN 525 (673)
T KOG0333|consen 462 MPPAVERLARSYLRRPVVVTIGSAGK---------PTPRVEQKVEMVSEDEKRKKLIEILE-------SNFDPPIIIFVN 525 (673)
T ss_pred CChHHHHHHHHHhhCCeEEEeccCCC---------CccchheEEEEecchHHHHHHHHHHH-------hCCCCCEEEEEe
Confidence 99999999999999999998776552 34679999999999999999999993 346789999999
Q ss_pred cccchhhhHHHHhhhh
Q psy15524 318 TQDMADYHTELLSTKK 333 (930)
Q Consensus 318 s~~~~~~l~~~L~~~~ 333 (930)
+++.|+.+|+.|.+.|
T Consensus 526 ~kk~~d~lAk~LeK~g 541 (673)
T KOG0333|consen 526 TKKGADALAKILEKAG 541 (673)
T ss_pred chhhHHHHHHHHhhcc
Confidence 9999999999999887
|
|
| >TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-32 Score=302.07 Aligned_cols=312 Identities=15% Similarity=0.211 Sum_probs=200.6
Q ss_pred HHHHhHHhhhcCCc--EEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHHHHhhccCC-
Q psy15524 418 VQQLSIQPILDGGD--VLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFT- 494 (930)
Q Consensus 418 iQ~~~i~~il~~~d--~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~- 494 (930)
+|.++++.+.++++ ++++||||||||++|++|++.. +.++++++|+++|+.|+++.+..++..+.
T Consensus 1 hQ~~~~~~~~~~~~~~~~i~apTGsGKT~~~~~~~l~~------------~~~~~~~~P~~aL~~~~~~~~~~~~~~~~~ 68 (357)
T TIGR03158 1 HQVATFEALQSKDADIIFNTAPTGAGKTLAWLTPLLHG------------ENDTIALYPTNALIEDQTEAIKEFVDVFKP 68 (357)
T ss_pred CHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHc------------CCCEEEEeChHHHHHHHHHHHHHHHHhcCC
Confidence 49999999999875 7889999999999999999841 23589999999999999999999875432
Q ss_pred --CcceEEEeCCCchH--HH-----------------HHH-HhcCCcEEEECchhHHHhhhccC---C----cccccceE
Q psy15524 495 --WIVPSWLTGGEKMK--SE-----------------KAR-IRKGISILVATPGRLLDHCKHTE---T----LKFSKVEH 545 (930)
Q Consensus 495 --~~~~~~~~gg~~~~--~~-----------------~~~-~~~~~~Ilv~Tp~rl~~~l~~~~---~----~~~~~l~~ 545 (930)
......+.|..... .. +.. ....+.|+++||+.|..+++.+. . ..+.++++
T Consensus 69 ~~~~~v~~~~g~~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~p~~l~~llr~~~~~~~~~~~~~~~~~~~ 148 (357)
T TIGR03158 69 ERDVNLLHVSKATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFYTKFST 148 (357)
T ss_pred CCCceEEEecCCchHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEecHHHHHHHHhhhccCcccchhhhhcCCCE
Confidence 22233334431111 00 001 12357899999999977665421 1 12578999
Q ss_pred EEEecchhhhhcCcHHHH--HHHHHHHhhcCccceEEEEccccCHHHHHHHhhh--cCCCEEEEccCC-CCc-------c
Q psy15524 546 LVLDEADRILDQGYERDI--AEFLEILKKQKPQFQSILLSATLTPAVQRLAGMT--LQNPIQIDAADS-TDI-------H 613 (930)
Q Consensus 546 lVlDEah~l~~~g~~~~l--~~i~~~l~~~~~~~q~vl~SAT~~~~~~~l~~~~--~~~~~~i~~~~~-~~~-------~ 613 (930)
+|+||+|.+...+....+ ......+.......+++++|||+++.+.+..... +..+........ ... .
T Consensus 149 iV~DE~H~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~lSAT~~~~~~~~l~~~~~~~~~~~~v~g~~~~~~~~~~~~~~ 228 (357)
T TIGR03158 149 VIFDEFHLYDAKQLVGMLFLLAYMQLIRFFECRRKFVFLSATPDPALILRLQNAKQAGVKIAPIDGEKYQFPDNPELEAD 228 (357)
T ss_pred EEEecccccCcccchhhhhhhHHHHHHHhhhcCCcEEEEecCCCHHHHHHHHhccccCceeeeecCcccccCCChhhhcc
Confidence 999999998754422111 1122222211225799999999999876666543 344432211110 000 0
Q ss_pred cCc-cceecCCCceEEEEEcCchhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCCceEEEecC
Q psy15524 614 NTT-DSLVIPDSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHG 692 (930)
Q Consensus 614 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg 692 (930)
... ....+...+.+.+.. ....+...+...+...........++++||||+|++.++.+++.|++. +.++.+..+||
T Consensus 229 ~~~~~~~~~~~~i~~~~~~-~~~~~~~~l~~l~~~i~~~~~~~~~~k~LIf~nt~~~~~~l~~~L~~~-~~~~~~~~l~g 306 (357)
T TIGR03158 229 NKTQSFRPVLPPVELELIP-APDFKEEELSELAEEVIERFRQLPGERGAIILDSLDEVNRLSDLLQQQ-GLGDDIGRITG 306 (357)
T ss_pred ccccccceeccceEEEEEe-CCchhHHHHHHHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHhhh-CCCceEEeeec
Confidence 000 000011134444433 333333333222221111111112679999999999999999999864 12457788999
Q ss_pred CCCHHHHHHHHHHhhcCCCcEEEeccccccccCCCCccEEEEecCCCChhhHHhhhcccc
Q psy15524 693 SMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTA 752 (930)
Q Consensus 693 ~~~~~~R~~v~~~F~~~~~~vLv~T~~~~~GlDip~v~~VI~~~~p~s~~~y~qr~GRag 752 (930)
.+++.+|.++ ++..||||||+++||+|+|.+ +|| ++ |.+.++|+||+||+|
T Consensus 307 ~~~~~~R~~~------~~~~iLVaTdv~~rGiDi~~~-~vi-~~-p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 307 FAPKKDRERA------MQFDILLGTSTVDVGVDFKRD-WLI-FS-ARDAAAFWQRLGRLG 357 (357)
T ss_pred CCCHHHHHHh------ccCCEEEEecHHhcccCCCCc-eEE-EC-CCCHHHHhhhcccCC
Confidence 9999998754 367899999999999999987 566 45 899999999999997
|
subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system. |
| >PTZ00110 helicase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-33 Score=321.03 Aligned_cols=252 Identities=31% Similarity=0.440 Sum_probs=201.0
Q ss_pred CCCccCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHH
Q psy15524 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKL 80 (930)
Q Consensus 1 ~g~~~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~ 80 (930)
+||+.|||+|.++||.+++|+|++++||||||||++|++|++.++..... .....++.+|||+||+|||.|+.+.++++
T Consensus 148 ~g~~~pt~iQ~~aip~~l~G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~-~~~~~gp~~LIL~PTreLa~Qi~~~~~~~ 226 (545)
T PTZ00110 148 AGFTEPTPIQVQGWPIALSGRDMIGIAETGSGKTLAFLLPAIVHINAQPL-LRYGDGPIVLVLAPTRELAEQIREQCNKF 226 (545)
T ss_pred CCCCCCCHHHHHHHHHHhcCCCEEEEeCCCChHHHHHHHHHHHHHHhccc-ccCCCCcEEEEECChHHHHHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999998865322 12235788999999999999999999999
Q ss_pred hhhcCCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCcHHHHHHHHHH
Q psy15524 81 CKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEI 160 (930)
Q Consensus 81 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~~~~~~~i~~~ 160 (930)
+.... +.+.+++|+.....+...+..+++|+|+||++|.+++.. ....++++++|||||||+|++++|++++..++..
T Consensus 227 ~~~~~-i~~~~~~gg~~~~~q~~~l~~~~~IlVaTPgrL~d~l~~-~~~~l~~v~~lViDEAd~mld~gf~~~i~~il~~ 304 (545)
T PTZ00110 227 GASSK-IRNTVAYGGVPKRGQIYALRRGVEILIACPGRLIDFLES-NVTNLRRVTYLVLDEADRMLDMGFEPQIRKIVSQ 304 (545)
T ss_pred hcccC-ccEEEEeCCCCHHHHHHHHHcCCCEEEECHHHHHHHHHc-CCCChhhCcEEEeehHHhhhhcchHHHHHHHHHh
Confidence 87554 677788899888888888888999999999999999876 5667899999999999999999999988887765
Q ss_pred HhhcCCCceEEEEEeecCCCccccccccccccccccchhhhhhhhhhhccchhhHHHHHHHHhhcCcCceEEEEecccch
Q psy15524 161 LKKQKPQFQSILLSATLTPATCWCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLTP 240 (930)
Q Consensus 161 l~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~de~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~sat~~~ 240 (930)
++. +. |+++||||++.
T Consensus 305 ~~~---~~-------------------------------------------------------------q~l~~SAT~p~ 320 (545)
T PTZ00110 305 IRP---DR-------------------------------------------------------------QTLMWSATWPK 320 (545)
T ss_pred CCC---CC-------------------------------------------------------------eEEEEEeCCCH
Confidence 532 22 66666666666
Q ss_pred HHHHhhhcccc-CCeeeccCCcccccCCCcccccCCCceeEEEEcCcchhHHHHHHHHhhhccccccCCcceEEEEEecc
Q psy15524 241 AVQRLAGMTLQ-NPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQ 319 (930)
Q Consensus 241 ~~~~l~~~~l~-~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~iVF~~s~ 319 (930)
.++.++..++. +++.+.+.... .....++.+.+..+....|...|..++... .....++||||+++
T Consensus 321 ~v~~l~~~l~~~~~v~i~vg~~~--------l~~~~~i~q~~~~~~~~~k~~~L~~ll~~~-----~~~~~k~LIF~~t~ 387 (545)
T PTZ00110 321 EVQSLARDLCKEEPVHVNVGSLD--------LTACHNIKQEVFVVEEHEKRGKLKMLLQRI-----MRDGDKILIFVETK 387 (545)
T ss_pred HHHHHHHHHhccCCEEEEECCCc--------cccCCCeeEEEEEEechhHHHHHHHHHHHh-----cccCCeEEEEecCh
Confidence 66666666554 45554433211 122356778888777778888888888431 22567999999999
Q ss_pred cchhhhHHHHhhh
Q psy15524 320 DMADYHTELLSTK 332 (930)
Q Consensus 320 ~~~~~l~~~L~~~ 332 (930)
+.|+.++..|+..
T Consensus 388 ~~a~~l~~~L~~~ 400 (545)
T PTZ00110 388 KGADFLTKELRLD 400 (545)
T ss_pred HHHHHHHHHHHHc
Confidence 9999999999643
|
|
| >PRK04837 ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-32 Score=312.15 Aligned_cols=252 Identities=26% Similarity=0.378 Sum_probs=205.1
Q ss_pred CCCccCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcC-CCCCCeEEEEEcccHHHHHHHHHHHHH
Q psy15524 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKI-SRKDGIYAVIILPTRELALQTLEIFTK 79 (930)
Q Consensus 1 ~g~~~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~-~~~~~~~~lvl~P~~~L~~q~~~~~~~ 79 (930)
+||..|||+|++|||.++.|+|++++||||||||++|++|+++.+....... ....++++|||+||+|||.|+++.+..
T Consensus 26 ~g~~~pt~iQ~~aip~il~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~~~~~lil~PtreLa~Qi~~~~~~ 105 (423)
T PRK04837 26 KGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVNQPRALIMAPTRELAVQIHADAEP 105 (423)
T ss_pred CCCCCCCHHHHHHHHHHhCCCcEEEECCCCchHHHHHHHHHHHHHHhcccccccccCCceEEEECCcHHHHHHHHHHHHH
Confidence 5999999999999999999999999999999999999999999987643211 123467899999999999999999999
Q ss_pred HhhhcCCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCcHHHHHHHHH
Q psy15524 80 LCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLE 159 (930)
Q Consensus 80 ~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~~~~~~~i~~ 159 (930)
+....+ +.+..++||.....+...+..+++|+|+||+++.+++.. ..+.++++++|||||||++++++|..++..++.
T Consensus 106 l~~~~~-~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~-~~~~l~~v~~lViDEad~l~~~~f~~~i~~i~~ 183 (423)
T PRK04837 106 LAQATG-LKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQ-NHINLGAIQVVVLDEADRMFDLGFIKDIRWLFR 183 (423)
T ss_pred HhccCC-ceEEEEECCCCHHHHHHHhcCCCCEEEECHHHHHHHHHc-CCcccccccEEEEecHHHHhhcccHHHHHHHHH
Confidence 987665 777888899888888888888899999999999999875 677899999999999999999999988887776
Q ss_pred HHhhcCCCceEEEEEeecCCCccccccccccccccccchhhhhhhhhhhccchhhHHHHHHHHhhcCcCceEEEEecccc
Q psy15524 160 ILKKQKPQFQSILLSATLTPATCWCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLT 239 (930)
Q Consensus 160 ~l~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~de~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~sat~~ 239 (930)
.++... .+|.++||||++
T Consensus 184 ~~~~~~--------------------------------------------------------------~~~~~l~SAT~~ 201 (423)
T PRK04837 184 RMPPAN--------------------------------------------------------------QRLNMLFSATLS 201 (423)
T ss_pred hCCCcc--------------------------------------------------------------ceeEEEEeccCC
Confidence 553211 126677777777
Q ss_pred hHHHHhhhccccCCeeeccCCcccccCCCcccccCCCceeEEEEcCcchhHHHHHHHHhhhccccccCCcceEEEEEecc
Q psy15524 240 PAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQ 319 (930)
Q Consensus 240 ~~~~~l~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~iVF~~s~ 319 (930)
..+..+....+.+|..+.+.... .....+.+.+.......|...+..++. .....++||||+++
T Consensus 202 ~~~~~~~~~~~~~p~~i~v~~~~---------~~~~~i~~~~~~~~~~~k~~~l~~ll~-------~~~~~~~lVF~~t~ 265 (423)
T PRK04837 202 YRVRELAFEHMNNPEYVEVEPEQ---------KTGHRIKEELFYPSNEEKMRLLQTLIE-------EEWPDRAIIFANTK 265 (423)
T ss_pred HHHHHHHHHHCCCCEEEEEcCCC---------cCCCceeEEEEeCCHHHHHHHHHHHHH-------hcCCCeEEEEECCH
Confidence 77777777777777776554332 123456677777667788888888883 33467899999999
Q ss_pred cchhhhHHHHhhh
Q psy15524 320 DMADYHTELLSTK 332 (930)
Q Consensus 320 ~~~~~l~~~L~~~ 332 (930)
..|+.++..|+..
T Consensus 266 ~~~~~l~~~L~~~ 278 (423)
T PRK04837 266 HRCEEIWGHLAAD 278 (423)
T ss_pred HHHHHHHHHHHhC
Confidence 9999999999754
|
|
| >PRK11776 ATP-dependent RNA helicase DbpA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-32 Score=315.85 Aligned_cols=244 Identities=31% Similarity=0.494 Sum_probs=206.0
Q ss_pred CCCccCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHH
Q psy15524 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKL 80 (930)
Q Consensus 1 ~g~~~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~ 80 (930)
+||++|||+|++||+.++.|+|++++||||||||++|++|+++.+... ....++||++||++|+.|+.+.++.+
T Consensus 22 ~g~~~~t~iQ~~ai~~~l~g~dvi~~a~TGsGKT~a~~lpil~~l~~~------~~~~~~lil~PtreLa~Q~~~~~~~~ 95 (460)
T PRK11776 22 LGYTEMTPIQAQSLPAILAGKDVIAQAKTGSGKTAAFGLGLLQKLDVK------RFRVQALVLCPTRELADQVAKEIRRL 95 (460)
T ss_pred CCCCCCCHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHhhhc------cCCceEEEEeCCHHHHHHHHHHHHHH
Confidence 699999999999999999999999999999999999999999998541 23567999999999999999999999
Q ss_pred hhhcCCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCcHHHHHHHHHH
Q psy15524 81 CKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEI 160 (930)
Q Consensus 81 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~~~~~~~i~~~ 160 (930)
+.......+..++||.....+...+..+++|+|+||+++.+++.+ +.+.++++++||+||||+|++++|...+..++..
T Consensus 96 ~~~~~~~~v~~~~Gg~~~~~~~~~l~~~~~IvV~Tp~rl~~~l~~-~~~~l~~l~~lViDEad~~l~~g~~~~l~~i~~~ 174 (460)
T PRK11776 96 ARFIPNIKVLTLCGGVPMGPQIDSLEHGAHIIVGTPGRILDHLRK-GTLDLDALNTLVLDEADRMLDMGFQDAIDAIIRQ 174 (460)
T ss_pred HhhCCCcEEEEEECCCChHHHHHHhcCCCCEEEEChHHHHHHHHc-CCccHHHCCEEEEECHHHHhCcCcHHHHHHHHHh
Confidence 876656788889999998888888888999999999999999876 6677899999999999999999998888777765
Q ss_pred HhhcCCCceEEEEEeecCCCccccccccccccccccchhhhhhhhhhhccchhhHHHHHHHHhhcCcCceEEEEecccch
Q psy15524 161 LKKQKPQFQSILLSATLTPATCWCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLTP 240 (930)
Q Consensus 161 l~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~de~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~sat~~~ 240 (930)
++.. +|+++||||+++
T Consensus 175 ~~~~----------------------------------------------------------------~q~ll~SAT~~~ 190 (460)
T PRK11776 175 APAR----------------------------------------------------------------RQTLLFSATYPE 190 (460)
T ss_pred CCcc----------------------------------------------------------------cEEEEEEecCcH
Confidence 5322 277777777777
Q ss_pred HHHHhhhccccCCeeeccCCcccccCCCcccccCCCceeEEEEcCcchhHHHHHHHHhhhccccccCCcceEEEEEeccc
Q psy15524 241 AVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQD 320 (930)
Q Consensus 241 ~~~~l~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~iVF~~s~~ 320 (930)
.+..++..++.+|..+.+.... ....+.+.+..++...|...+..++. .....++||||+++.
T Consensus 191 ~~~~l~~~~~~~~~~i~~~~~~----------~~~~i~~~~~~~~~~~k~~~l~~ll~-------~~~~~~~lVF~~t~~ 253 (460)
T PRK11776 191 GIAAISQRFQRDPVEVKVESTH----------DLPAIEQRFYEVSPDERLPALQRLLL-------HHQPESCVVFCNTKK 253 (460)
T ss_pred HHHHHHHHhcCCCEEEEECcCC----------CCCCeeEEEEEeCcHHHHHHHHHHHH-------hcCCCceEEEECCHH
Confidence 7777888888888777654432 13457888888888889999988883 345678999999999
Q ss_pred chhhhHHHHhhh
Q psy15524 321 MADYHTELLSTK 332 (930)
Q Consensus 321 ~~~~l~~~L~~~ 332 (930)
.++.+++.|...
T Consensus 254 ~~~~l~~~L~~~ 265 (460)
T PRK11776 254 ECQEVADALNAQ 265 (460)
T ss_pred HHHHHHHHHHhC
Confidence 999999999764
|
|
| >PRK13104 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-32 Score=312.34 Aligned_cols=333 Identities=19% Similarity=0.197 Sum_probs=235.6
Q ss_pred CCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHHHHhhccCC
Q psy15524 415 VTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFT 494 (930)
Q Consensus 415 ~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~ 494 (930)
++|+-.|.+..+.-++.-|+.|+||+|||++|.+|++..+.. |..++||+||++||.|.++.+..++..++
T Consensus 81 ~~~ydvQliGg~~Lh~G~Iaem~TGeGKTL~a~Lpa~~~al~---------G~~V~VvTpn~yLA~qd~e~m~~l~~~lG 151 (896)
T PRK13104 81 LRHFDVQLIGGMVLHEGNIAEMRTGEGKTLVATLPAYLNAIS---------GRGVHIVTVNDYLAKRDSQWMKPIYEFLG 151 (896)
T ss_pred CCcchHHHhhhhhhccCccccccCCCCchHHHHHHHHHHHhc---------CCCEEEEcCCHHHHHHHHHHHHHHhcccC
Confidence 566666666666666667999999999999999999977654 55699999999999999999999998766
Q ss_pred CcceEEEeCCCchHHHHHHHhcCCcEEEECchhH-HHhhhccCCccc-----ccceEEEEecchhhh-h-----------
Q psy15524 495 WIVPSWLTGGEKMKSEKARIRKGISILVATPGRL-LDHCKHTETLKF-----SKVEHLVLDEADRIL-D----------- 556 (930)
Q Consensus 495 ~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl-~~~l~~~~~~~~-----~~l~~lVlDEah~l~-~----------- 556 (930)
+.+++++||........ ...++|+|+|||+| .++++....+.+ +.+.++|+||||.++ |
T Consensus 152 -Ltv~~i~gg~~~~~r~~--~y~~dIvygT~grlgfDyLrd~~~~~~~~~v~r~l~~~IvDEaDsiLIDeArtPLIISg~ 228 (896)
T PRK13104 152 -LTVGVIYPDMSHKEKQE--AYKADIVYGTNNEYGFDYLRDNMAFSLTDKVQRELNFAIVDEVDSILIDEARTPLIISGA 228 (896)
T ss_pred -ceEEEEeCCCCHHHHHH--HhCCCEEEECChhhhHHHHhcCCccchHhhhccccceEEeccHhhhhhhccCCceeeeCC
Confidence 56778888876554433 34799999999999 999887534444 689999999999986 1
Q ss_pred ----cCcHHHHHHHHHHHhhc-----------CccceEEEEccccCHHHHHHH---------------------------
Q psy15524 557 ----QGYERDIAEFLEILKKQ-----------KPQFQSILLSATLTPAVQRLA--------------------------- 594 (930)
Q Consensus 557 ----~g~~~~l~~i~~~l~~~-----------~~~~q~vl~SAT~~~~~~~l~--------------------------- 594 (930)
......+..++..|... ....+.+.+|-.-...++.+.
T Consensus 229 ~~~~~~~y~~~~~~v~~l~~~~~~~~~~dy~idek~~~v~Lte~G~~~~e~~~~~~~il~~~~~l~~~~~~~~~~~i~~a 308 (896)
T PRK13104 229 AEDSSELYIKINSLIPQLKKQEEEGDEGDYTIDEKQKQAHLTDAGHLHIEELLTKAKLLDPGESLYHASNIMLMHHVNAA 308 (896)
T ss_pred CccchHHHHHHHHHHHHHHhccccCCCCCEEEEcCCCceEEchHHHHHHHHHHHhCCccCCcccccCchhhhHHHHHHHH
Confidence 11233445555555432 112333444433111111111
Q ss_pred ---h-hhcCCCEEEE-------ccCC-----------------------------C----------------------Cc
Q psy15524 595 ---G-MTLQNPIQID-------AADS-----------------------------T----------------------DI 612 (930)
Q Consensus 595 ---~-~~~~~~~~i~-------~~~~-----------------------------~----------------------~~ 612 (930)
. .+.++-.++- ++.. . -.
T Consensus 309 L~A~~lf~~d~dYiV~dg~V~iVDe~TGR~m~grr~s~GLHQaiEaKE~v~i~~e~~t~AsIT~Qn~Fr~Y~kLsGMTGT 388 (896)
T PRK13104 309 LKAHAMFHRDIDYIVKDNQVVIVDEHTGRTMPGRRWSEGLHQAVEAKEGVPIQNENQTLASITFQNFFRMYNKLSGMTGT 388 (896)
T ss_pred HHHHHHhcCCCceEEECCEEEEEECCCCCcCCCCCcChHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhcchhccCCCC
Confidence 0 0011111110 0000 0 00
Q ss_pred ----------ccCccceecCCCceE------EEEEcCchhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHH
Q psy15524 613 ----------HNTTDSLVIPDSLKQ------HFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTEL 676 (930)
Q Consensus 613 ----------~~~~~~~~~~~~~~~------~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~ 676 (930)
-.......+|..... -.+......|..++...+..... .+.|+||||+|.+.++.++++
T Consensus 389 a~te~~Ef~~iY~l~Vv~IPtnkp~~R~d~~d~v~~t~~~k~~av~~~i~~~~~-----~g~PVLVgt~Sie~sE~ls~~ 463 (896)
T PRK13104 389 ADTEAYEFQQIYNLEVVVIPTNRSMIRKDEADLVYLTQADKFQAIIEDVRECGV-----RKQPVLVGTVSIEASEFLSQL 463 (896)
T ss_pred ChhHHHHHHHHhCCCEEECCCCCCcceecCCCeEEcCHHHHHHHHHHHHHHHHh-----CCCCEEEEeCcHHHHHHHHHH
Confidence 000111223332221 12445556778887777765433 288999999999999999999
Q ss_pred HhhhcCCCceEEEecCCCCHHHHHHHHHHhhcCCCcEEEeccccccccCCC-----------------------------
Q psy15524 677 LSTVLGENIAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLP----------------------------- 727 (930)
Q Consensus 677 l~~~~~~~~~~~~lhg~~~~~~R~~v~~~F~~~~~~vLv~T~~~~~GlDip----------------------------- 727 (930)
|.+. |+++..+||++.+.+|..+.++|+.|. |+|||++|+||+||.
T Consensus 464 L~~~---gi~h~vLnak~~q~Ea~iia~Ag~~G~--VtIATNmAGRGtDI~Lggn~~~~~~~~~~~~~~~~~~~~~~~~~ 538 (896)
T PRK13104 464 LKKE---NIKHQVLNAKFHEKEAQIIAEAGRPGA--VTIATNMAGRGTDIVLGGSLAADLANLPADASEQEKEAVKKEWQ 538 (896)
T ss_pred HHHc---CCCeEeecCCCChHHHHHHHhCCCCCc--EEEeccCccCCcceecCCchhhhhhccccchhhHHHHHHHHHhh
Confidence 9985 899999999999999999999999995 999999999999995
Q ss_pred ----Cc-----cEEEEecCCCChhhHHhhhcccccCCCCceEEEEeCcccH
Q psy15524 728 ----LV-----DWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPSEV 769 (930)
Q Consensus 728 ----~v-----~~VI~~~~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~e~ 769 (930)
.| -+||....+.|..--.|-.||+||.|.+|.+.+|++=++.
T Consensus 539 ~~~~~V~~~GGL~VIgTerhesrRID~QLrGRaGRQGDPGss~f~lSleD~ 589 (896)
T PRK13104 539 KRHDEVIAAGGLRIIGSERHESRRIDNQLRGRAGRQGDPGSSRFYLSLEDN 589 (896)
T ss_pred hhhhHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEEcCcH
Confidence 11 2799999999999999999999999999999999995543
|
|
| >PRK11634 ATP-dependent RNA helicase DeaD; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-32 Score=320.16 Aligned_cols=246 Identities=30% Similarity=0.470 Sum_probs=207.3
Q ss_pred CCCccCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHH
Q psy15524 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKL 80 (930)
Q Consensus 1 ~g~~~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~ 80 (930)
+||++|||+|+++|+.+++|+|+|++||||||||++|.+|+++.+.. ...++++|||+||++|+.|+++.+..+
T Consensus 24 ~G~~~ptpiQ~~ai~~ll~g~dvl~~ApTGsGKT~af~lpll~~l~~------~~~~~~~LIL~PTreLa~Qv~~~l~~~ 97 (629)
T PRK11634 24 LGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNLDP------ELKAPQILVLAPTRELAVQVAEAMTDF 97 (629)
T ss_pred CCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHHHhhh------ccCCCeEEEEeCcHHHHHHHHHHHHHH
Confidence 69999999999999999999999999999999999999999998854 123568999999999999999999999
Q ss_pred hhhcCCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCcHHHHHHHHHH
Q psy15524 81 CKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEI 160 (930)
Q Consensus 81 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~~~~~~~i~~~ 160 (930)
......+.+..++||.....+...+..+++|+|+||+++++++.+ ..+.++++++|||||||+|++++|..++..++..
T Consensus 98 ~~~~~~i~v~~~~gG~~~~~q~~~l~~~~~IVVgTPgrl~d~l~r-~~l~l~~l~~lVlDEAd~ml~~gf~~di~~Il~~ 176 (629)
T PRK11634 98 SKHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKR-GTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQ 176 (629)
T ss_pred HhhcCCceEEEEECCcCHHHHHHHhcCCCCEEEECHHHHHHHHHc-CCcchhhceEEEeccHHHHhhcccHHHHHHHHHh
Confidence 877666788888999988888888888999999999999999876 6678999999999999999999998887777665
Q ss_pred HhhcCCCceEEEEEeecCCCccccccccccccccccchhhhhhhhhhhccchhhHHHHHHHHhhcCcCceEEEEecccch
Q psy15524 161 LKKQKPQFQSILLSATLTPATCWCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLTP 240 (930)
Q Consensus 161 l~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~de~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~sat~~~ 240 (930)
++.. .|+++||||++.
T Consensus 177 lp~~----------------------------------------------------------------~q~llfSAT~p~ 192 (629)
T PRK11634 177 IPEG----------------------------------------------------------------HQTALFSATMPE 192 (629)
T ss_pred CCCC----------------------------------------------------------------CeEEEEEccCCh
Confidence 5322 277788888888
Q ss_pred HHHHhhhccccCCeeeccCCcccccCCCcccccCCCceeEEEEcCcchhHHHHHHHHhhhccccccCCcceEEEEEeccc
Q psy15524 241 AVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQD 320 (930)
Q Consensus 241 ~~~~l~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~iVF~~s~~ 320 (930)
.+..+...++.++..+.+.... .....+.+.|..+....|...|..++. .....++||||+|+.
T Consensus 193 ~i~~i~~~~l~~~~~i~i~~~~---------~~~~~i~q~~~~v~~~~k~~~L~~~L~-------~~~~~~~IVF~~tk~ 256 (629)
T PRK11634 193 AIRRITRRFMKEPQEVRIQSSV---------TTRPDISQSYWTVWGMRKNEALVRFLE-------AEDFDAAIIFVRTKN 256 (629)
T ss_pred hHHHHHHHHcCCCeEEEccCcc---------ccCCceEEEEEEechhhHHHHHHHHHH-------hcCCCCEEEEeccHH
Confidence 8888888888888777655433 123567788887877889999988883 344578999999999
Q ss_pred chhhhHHHHhhhh
Q psy15524 321 MADYHTELLSTKK 333 (930)
Q Consensus 321 ~~~~l~~~L~~~~ 333 (930)
.++.++..|...+
T Consensus 257 ~a~~l~~~L~~~g 269 (629)
T PRK11634 257 ATLEVAEALERNG 269 (629)
T ss_pred HHHHHHHHHHhCC
Confidence 9999999997654
|
|
| >PRK10590 ATP-dependent RNA helicase RhlE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-32 Score=313.02 Aligned_cols=250 Identities=34% Similarity=0.521 Sum_probs=201.1
Q ss_pred CCCccCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHH
Q psy15524 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKL 80 (930)
Q Consensus 1 ~g~~~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~ 80 (930)
+||+.|||+|++||+.+++|+|++++||||||||++|++|+++.+.............++|||+||++||.|+.+.++.+
T Consensus 19 ~g~~~pt~iQ~~ai~~il~g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~~~~~ 98 (456)
T PRK10590 19 QGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDY 98 (456)
T ss_pred CCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHhhhcccccccCCCceEEEEeCcHHHHHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999865432211223468999999999999999999999
Q ss_pred hhhcCCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCcHHHHHHHHHH
Q psy15524 81 CKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEI 160 (930)
Q Consensus 81 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~~~~~~~i~~~ 160 (930)
....+ +....++|+.....+...+..+++|+|+||++|++++.. ..+.++++++|||||||++++++|..++..++..
T Consensus 99 ~~~~~-~~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rL~~~~~~-~~~~l~~v~~lViDEah~ll~~~~~~~i~~il~~ 176 (456)
T PRK10590 99 SKYLN-IRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQ-NAVKLDQVEILVLDEADRMLDMGFIHDIRRVLAK 176 (456)
T ss_pred hccCC-CEEEEEECCcCHHHHHHHHcCCCcEEEEChHHHHHHHHc-CCcccccceEEEeecHHHHhccccHHHHHHHHHh
Confidence 87655 667778888888888778888899999999999998875 5667899999999999999999998887777655
Q ss_pred HhhcCCCceEEEEEeecCCCccccccccccccccccchhhhhhhhhhhccchhhHHHHHHHHhhcCcCceEEEEecccch
Q psy15524 161 LKKQKPQFQSILLSATLTPATCWCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLTP 240 (930)
Q Consensus 161 l~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~de~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~sat~~~ 240 (930)
++.. +|.++||||++.
T Consensus 177 l~~~----------------------------------------------------------------~q~l~~SAT~~~ 192 (456)
T PRK10590 177 LPAK----------------------------------------------------------------RQNLLFSATFSD 192 (456)
T ss_pred CCcc----------------------------------------------------------------CeEEEEeCCCcH
Confidence 4322 267777777777
Q ss_pred HHHHhhhccccCCeeeccCCcccccCCCcccccCCCceeEEEEcCcchhHHHHHHHHhhhccccccCCcceEEEEEeccc
Q psy15524 241 AVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQD 320 (930)
Q Consensus 241 ~~~~l~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~iVF~~s~~ 320 (930)
.+..+...++.++..+.+.... .....+.+++..++...|...+..++ ......++||||+++.
T Consensus 193 ~~~~l~~~~~~~~~~i~~~~~~---------~~~~~i~~~~~~~~~~~k~~~l~~l~-------~~~~~~~~lVF~~t~~ 256 (456)
T PRK10590 193 DIKALAEKLLHNPLEIEVARRN---------TASEQVTQHVHFVDKKRKRELLSQMI-------GKGNWQQVLVFTRTKH 256 (456)
T ss_pred HHHHHHHHHcCCCeEEEEeccc---------ccccceeEEEEEcCHHHHHHHHHHHH-------HcCCCCcEEEEcCcHH
Confidence 7777777777777666543322 12356778888887777777777666 3345678999999999
Q ss_pred chhhhHHHHhhh
Q psy15524 321 MADYHTELLSTK 332 (930)
Q Consensus 321 ~~~~l~~~L~~~ 332 (930)
.++.+++.|...
T Consensus 257 ~~~~l~~~L~~~ 268 (456)
T PRK10590 257 GANHLAEQLNKD 268 (456)
T ss_pred HHHHHHHHHHHC
Confidence 999999999643
|
|
| >PRK04537 ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-32 Score=317.89 Aligned_cols=253 Identities=28% Similarity=0.450 Sum_probs=203.1
Q ss_pred CCCccCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCc-CCCCCCeEEEEEcccHHHHHHHHHHHHH
Q psy15524 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPK-ISRKDGIYAVIILPTRELALQTLEIFTK 79 (930)
Q Consensus 1 ~g~~~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~-~~~~~~~~~lvl~P~~~L~~q~~~~~~~ 79 (930)
+||+.|||+|+++||.+++|+|++++||||||||++|++|+++.+...... .....++++|||+||+||+.|+++.+.+
T Consensus 27 ~g~~~ptpiQ~~~ip~~l~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~raLIl~PTreLa~Qi~~~~~~ 106 (572)
T PRK04537 27 AGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRALILAPTRELAIQIHKDAVK 106 (572)
T ss_pred CCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCCceEEEEeCcHHHHHHHHHHHHH
Confidence 589999999999999999999999999999999999999999998653211 1112357899999999999999999999
Q ss_pred HhhhcCCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCcHHHHHHHHH
Q psy15524 80 LCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLE 159 (930)
Q Consensus 80 ~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~~~~~~~i~~ 159 (930)
++...+ +.+..++|+.....+...+..+++|+|+||++|++++.+...+.+..+++|||||||+|++++|..++..++.
T Consensus 107 l~~~~~-i~v~~l~Gg~~~~~q~~~l~~~~dIiV~TP~rL~~~l~~~~~~~l~~v~~lViDEAh~lld~gf~~~i~~il~ 185 (572)
T PRK04537 107 FGADLG-LRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEADRMFDLGFIKDIRFLLR 185 (572)
T ss_pred HhccCC-ceEEEEECCCCHHHHHHHHhCCCCEEEECHHHHHHHHHhccccchhheeeeEecCHHHHhhcchHHHHHHHHH
Confidence 987655 7788899999888888888888999999999999998765567789999999999999999999988888877
Q ss_pred HHhhcCCCceEEEEEeecCCCccccccccccccccccchhhhhhhhhhhccchhhHHHHHHHHhhcCcCceEEEEecccc
Q psy15524 160 ILKKQKPQFQSILLSATLTPATCWCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLT 239 (930)
Q Consensus 160 ~l~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~de~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~sat~~ 239 (930)
.++... . +|+++||||++
T Consensus 186 ~lp~~~-~-------------------------------------------------------------~q~ll~SATl~ 203 (572)
T PRK04537 186 RMPERG-T-------------------------------------------------------------RQTLLFSATLS 203 (572)
T ss_pred hccccc-C-------------------------------------------------------------ceEEEEeCCcc
Confidence 664321 1 26666666666
Q ss_pred hHHHHhhhccccCCeeeccCCcccccCCCcccccCCCceeEEEEcCcchhHHHHHHHHhhhccccccCCcceEEEEEecc
Q psy15524 240 PAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQ 319 (930)
Q Consensus 240 ~~~~~l~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~iVF~~s~ 319 (930)
..+..+...++.++..+...... .....+.+.+..+....|...+..++ ....+.++||||||+
T Consensus 204 ~~v~~l~~~~l~~p~~i~v~~~~---------~~~~~i~q~~~~~~~~~k~~~L~~ll-------~~~~~~k~LVF~nt~ 267 (572)
T PRK04537 204 HRVLELAYEHMNEPEKLVVETET---------ITAARVRQRIYFPADEEKQTLLLGLL-------SRSEGARTMVFVNTK 267 (572)
T ss_pred HHHHHHHHHHhcCCcEEEecccc---------ccccceeEEEEecCHHHHHHHHHHHH-------hcccCCcEEEEeCCH
Confidence 66666666666666554432221 12355777777777788888888888 344567999999999
Q ss_pred cchhhhHHHHhhh
Q psy15524 320 DMADYHTELLSTK 332 (930)
Q Consensus 320 ~~~~~l~~~L~~~ 332 (930)
+.|+.+++.|.+.
T Consensus 268 ~~ae~l~~~L~~~ 280 (572)
T PRK04537 268 AFVERVARTLERH 280 (572)
T ss_pred HHHHHHHHHHHHc
Confidence 9999999999754
|
|
| >COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-32 Score=319.88 Aligned_cols=340 Identities=23% Similarity=0.275 Sum_probs=250.1
Q ss_pred HHHHHHHhcCCCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHH
Q psy15524 401 FMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELAL 480 (930)
Q Consensus 401 ~~~~~l~~~~~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~ 480 (930)
.+...+.+ .|+..+.++|.+|+..+.+|+|++|..+||||||+||++||++.+.+ ....++|+|.||++||.
T Consensus 58 ~l~~~l~~-~g~~~lY~HQ~~A~~~~~~G~~vvVtTgTgSGKTe~FllPIld~~l~-------~~~a~AL~lYPtnALa~ 129 (851)
T COG1205 58 SLKSALVK-AGIERLYSHQVDALRLIREGRNVVVTTGTGSGKTESFLLPILDHLLR-------DPSARALLLYPTNALAN 129 (851)
T ss_pred HHHHHHHH-hccccccHHHHHHHHHHHCCCCEEEECCCCCchhHHHHHHHHHHHhh-------CcCccEEEEechhhhHh
Confidence 34566654 57888999999999999999999999999999999999999999987 33448999999999999
Q ss_pred HHHHHHHHhhccCCC-cceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhccC-C--cccccceEEEEecchhhhh
Q psy15524 481 QTLEIFTKLCKSFTW-IVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTE-T--LKFSKVEHLVLDEADRILD 556 (930)
Q Consensus 481 Q~~~~~~~~~~~~~~-~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~-~--~~~~~l~~lVlDEah~l~~ 556 (930)
.+.+.+.++...++. +.....+|++..........+.++|+++||..|..++.+.. . +.++++++||+||+|.+ .
T Consensus 130 DQ~~rl~~~~~~~~~~v~~~~y~Gdt~~~~r~~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElHtY-r 208 (851)
T COG1205 130 DQAERLRELISDLPGKVTFGRYTGDTPPEERRAIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHTY-R 208 (851)
T ss_pred hHHHHHHHHHHhCCCcceeeeecCCCChHHHHHHHhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEecceec-c
Confidence 999999999988873 44455555555444445567889999999999977444322 2 24788999999999976 3
Q ss_pred cCcHHHHHHHHHHHhh----cCccceEEEEccccCHHHHHHHhhhcCCCEEEEccCCCCcccCccceecCCCceEEEEEc
Q psy15524 557 QGYERDIAEFLEILKK----QKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVT 632 (930)
Q Consensus 557 ~g~~~~l~~i~~~l~~----~~~~~q~vl~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 632 (930)
-.|+..+..++++|.. .....|+++.|||+.+..+........+... .+... ..|..........
T Consensus 209 Gv~GS~vA~llRRL~~~~~~~~~~~q~i~~SAT~~np~e~~~~l~~~~f~~-~v~~~----------g~~~~~~~~~~~~ 277 (851)
T COG1205 209 GVQGSEVALLLRRLLRRLRRYGSPLQIICTSATLANPGEFAEELFGRDFEV-PVDED----------GSPRGLRYFVRRE 277 (851)
T ss_pred ccchhHHHHHHHHHHHHHhccCCCceEEEEeccccChHHHHHHhcCCccee-eccCC----------CCCCCceEEEEeC
Confidence 3377777666666654 3457899999999987544333333222222 12211 1122233333333
Q ss_pred C---------chhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHH----HHHhhhcCC-CceEEEecCCCCHHH
Q psy15524 633 P---------PKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHT----ELLSTVLGE-NIAFFKLHGSMSQSE 698 (930)
Q Consensus 633 ~---------~~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~----~~l~~~~~~-~~~~~~lhg~~~~~~ 698 (930)
+ .......+..++..... .+-++|+|+.++..++.++ ..+...... ...+..++|+|...+
T Consensus 278 p~~~~~~~~~r~s~~~~~~~~~~~~~~-----~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~e 352 (851)
T COG1205 278 PPIRELAESIRRSALAELATLAALLVR-----NGIQTLVFFRSRKQVELLYLSPRRRLVREGGKLLDAVSTYRAGLHREE 352 (851)
T ss_pred CcchhhhhhcccchHHHHHHHHHHHHH-----cCceEEEEEehhhhhhhhhhchhHHHhhcchhhhhheeeccccCCHHH
Confidence 3 11222222222222211 2779999999999999886 222222100 145777899999999
Q ss_pred HHHHHHHhhcCCCcEEEeccccccccCCCCccEEEEecCCC-ChhhHHhhhcccccCCCCceEEEEeC
Q psy15524 699 RTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPS-SSTDYVHRVGRTARVGHEGSSLLFLI 765 (930)
Q Consensus 699 R~~v~~~F~~~~~~vLv~T~~~~~GlDip~v~~VI~~~~p~-s~~~y~qr~GRagR~g~~g~~~~~~~ 765 (930)
|.+++..|++|+..++++|+++.-|+|+-++++||.+..|. +..++.||.||+||.++.+..+.++.
T Consensus 353 r~~ie~~~~~g~~~~~~st~AlelgidiG~ldavi~~g~P~~s~~~~~Q~~GRaGR~~~~~l~~~v~~ 420 (851)
T COG1205 353 RRRIEAEFKEGELLGVIATNALELGIDIGSLDAVIAYGYPGVSVLSFRQRAGRAGRRGQESLVLVVLR 420 (851)
T ss_pred HHHHHHHHhcCCccEEecchhhhhceeehhhhhHhhcCCCCchHHHHHHhhhhccCCCCCceEEEEeC
Confidence 99999999999999999999999999999999999999999 89999999999999996666666555
|
|
| >KOG0335|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-33 Score=295.82 Aligned_cols=261 Identities=33% Similarity=0.393 Sum_probs=215.4
Q ss_pred CCccCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCC----CCCeEEEEEcccHHHHHHHHHHH
Q psy15524 2 NITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISR----KDGIYAVIILPTRELALQTLEIF 77 (930)
Q Consensus 2 g~~~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~----~~~~~~lvl~P~~~L~~q~~~~~ 77 (930)
||..|||+|+.+||.+..|+++++||+||||||.+|++|++.++......... ...+.+||++||+||+.|++++.
T Consensus 93 ~~~~ptpvQk~sip~i~~Grdl~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~~~~~~~P~~lIlapTReL~~Qi~nea 172 (482)
T KOG0335|consen 93 GYTKPTPVQKYSIPIISGGRDLMACAQTGSGKTAAFLIPIISYLLDEGPEDRGESGGGVYPRALILAPTRELVDQIYNEA 172 (482)
T ss_pred cccCCCcceeeccceeecCCceEEEccCCCcchHHHHHHHHHHHHhcCcccCcccCCCCCCceEEEeCcHHHhhHHHHHH
Confidence 78899999999999999999999999999999999999999999886542111 12488999999999999999999
Q ss_pred HHHhhhcCCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccc-cCcHHHHHH
Q psy15524 78 TKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILD-QGYERDIAE 156 (930)
Q Consensus 78 ~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~-~~~~~~~~~ 156 (930)
+++.... .+.....+|+.+...+...+.++|||+|+||++|.+++.. +.+.+..++++|+||||.|+| .+|+++++.
T Consensus 173 ~k~~~~s-~~~~~~~ygg~~~~~q~~~~~~gcdIlvaTpGrL~d~~e~-g~i~l~~~k~~vLDEADrMlD~mgF~p~Ir~ 250 (482)
T KOG0335|consen 173 RKFSYLS-GMKSVVVYGGTDLGAQLRFIKRGCDILVATPGRLKDLIER-GKISLDNCKFLVLDEADRMLDEMGFEPQIRK 250 (482)
T ss_pred Hhhcccc-cceeeeeeCCcchhhhhhhhccCccEEEecCchhhhhhhc-ceeehhhCcEEEecchHHhhhhccccccHHH
Confidence 9987643 4788889999999999999999999999999999999886 889999999999999999999 899999999
Q ss_pred HHHHHhhcCCCceEEEEEeecCCCccccccccccccccccchhhhhhhhhhhccchhhHHHHHHHHhhcCcCceEEEEec
Q psy15524 157 FLEILKKQKPQFQSILLSATLTPATCWCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSA 236 (930)
Q Consensus 157 i~~~l~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~de~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~sa 236 (930)
|+......+ ...+|+++|||
T Consensus 251 iv~~~~~~~------------------------------------------------------------~~~~qt~mFSA 270 (482)
T KOG0335|consen 251 IVEQLGMPP------------------------------------------------------------KNNRQTLLFSA 270 (482)
T ss_pred HhcccCCCC------------------------------------------------------------ccceeEEEEec
Confidence 887664321 12349999999
Q ss_pred ccchHHHHhhhccccC-CeeeccCCcccccCCCcccccCCCceeEEEEcCcchhHHHHHHHHhhhccc--cccCCcceEE
Q psy15524 237 TLTPAVQRLAGMTLQN-PIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALASFILGKCQN--VNEDEESKML 313 (930)
Q Consensus 237 t~~~~~~~l~~~~l~~-~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~--~~~~~~~~~i 313 (930)
|++..+..++..++.+ .+.+.+.... ....++.|.+.++.+.+|...|+.+|...... .......+++
T Consensus 271 tfp~~iq~l~~~fl~~~yi~laV~rvg---------~~~~ni~q~i~~V~~~~kr~~Lldll~~~~~~~~~~~~~~e~tl 341 (482)
T KOG0335|consen 271 TFPKEIQRLAADFLKDNYIFLAVGRVG---------STSENITQKILFVNEMEKRSKLLDLLNKDDGPPSDGEPKWEKTL 341 (482)
T ss_pred cCChhhhhhHHHHhhccceEEEEeeec---------cccccceeEeeeecchhhHHHHHHHhhcccCCcccCCcccceEE
Confidence 9999998888877765 4444333222 23578999999999999999999999542110 0111223899
Q ss_pred EEEecccchhhhHHHHhhhh
Q psy15524 314 VFMATQDMADYHTELLSTKK 333 (930)
Q Consensus 314 VF~~s~~~~~~l~~~L~~~~ 333 (930)
|||.|++.|..++.+|...+
T Consensus 342 vFvEt~~~~d~l~~~l~~~~ 361 (482)
T KOG0335|consen 342 VFVETKRGADELAAFLSSNG 361 (482)
T ss_pred EEeeccchhhHHHHHHhcCC
Confidence 99999999999999998664
|
|
| >PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-32 Score=311.68 Aligned_cols=250 Identities=28% Similarity=0.447 Sum_probs=199.4
Q ss_pred CCCccCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCc-CCCCCCeEEEEEcccHHHHHHHHHHHHH
Q psy15524 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPK-ISRKDGIYAVIILPTRELALQTLEIFTK 79 (930)
Q Consensus 1 ~g~~~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~-~~~~~~~~~lvl~P~~~L~~q~~~~~~~ 79 (930)
+||+.|||+|.+|||.++.|+|++++||||||||++|++|++.++...+.. .....++++|||+||+|||.|+.+.++.
T Consensus 139 ~g~~~ptpiQ~~aip~il~g~dviv~ApTGSGKTlayllPil~~l~~~~~~~~~~~~~~~aLIL~PTreLa~Qi~~~~~~ 218 (518)
T PLN00206 139 AGYEFPTPIQMQAIPAALSGRSLLVSADTGSGKTASFLVPIISRCCTIRSGHPSEQRNPLAMVLTPTRELCVQVEDQAKV 218 (518)
T ss_pred cCCCCCCHHHHHHHHHHhcCCCEEEEecCCCCccHHHHHHHHHHHHhhccccccccCCceEEEEeCCHHHHHHHHHHHHH
Confidence 589999999999999999999999999999999999999999988654322 1123578899999999999999999998
Q ss_pred HhhhcCCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCcHHHHHHHHH
Q psy15524 80 LCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLE 159 (930)
Q Consensus 80 ~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~~~~~~~i~~ 159 (930)
+....+ +....+.||.....+...+..+++|+|+||++|.+++.. ..+.++++++|||||||+|++++|+.++..++.
T Consensus 219 l~~~~~-~~~~~~~gG~~~~~q~~~l~~~~~IiV~TPgrL~~~l~~-~~~~l~~v~~lViDEad~ml~~gf~~~i~~i~~ 296 (518)
T PLN00206 219 LGKGLP-FKTALVVGGDAMPQQLYRIQQGVELIVGTPGRLIDLLSK-HDIELDNVSVLVLDEVDCMLERGFRDQVMQIFQ 296 (518)
T ss_pred HhCCCC-ceEEEEECCcchHHHHHHhcCCCCEEEECHHHHHHHHHc-CCccchheeEEEeecHHHHhhcchHHHHHHHHH
Confidence 877655 667778888888888888888999999999999999876 567789999999999999999999988877765
Q ss_pred HHhhcCCCceEEEEEeecCCCccccccccccccccccchhhhhhhhhhhccchhhHHHHHHHHhhcCcCceEEEEecccc
Q psy15524 160 ILKKQKPQFQSILLSATLTPATCWCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLT 239 (930)
Q Consensus 160 ~l~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~de~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~sat~~ 239 (930)
.++ ++ |+++||||++
T Consensus 297 ~l~----~~-------------------------------------------------------------q~l~~SATl~ 311 (518)
T PLN00206 297 ALS----QP-------------------------------------------------------------QVLLFSATVS 311 (518)
T ss_pred hCC----CC-------------------------------------------------------------cEEEEEeeCC
Confidence 542 22 5555555555
Q ss_pred hHHHHhhhccccCCeeeccCCcccccCCCcccccCCCceeEEEEcCcchhHHHHHHHHhhhccccccCCcceEEEEEecc
Q psy15524 240 PAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQ 319 (930)
Q Consensus 240 ~~~~~l~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~iVF~~s~ 319 (930)
..++.++..++.++..+...... .....+.+.+..++...|...+..++... .....++||||+++
T Consensus 312 ~~v~~l~~~~~~~~~~i~~~~~~---------~~~~~v~q~~~~~~~~~k~~~l~~~l~~~-----~~~~~~~iVFv~s~ 377 (518)
T PLN00206 312 PEVEKFASSLAKDIILISIGNPN---------RPNKAVKQLAIWVETKQKKQKLFDILKSK-----QHFKPPAVVFVSSR 377 (518)
T ss_pred HHHHHHHHHhCCCCEEEEeCCCC---------CCCcceeEEEEeccchhHHHHHHHHHHhh-----cccCCCEEEEcCCc
Confidence 66666666666777666544332 12345777788888778888888888431 22346899999999
Q ss_pred cchhhhHHHHhh
Q psy15524 320 DMADYHTELLST 331 (930)
Q Consensus 320 ~~~~~l~~~L~~ 331 (930)
..++.++..|..
T Consensus 378 ~~a~~l~~~L~~ 389 (518)
T PLN00206 378 LGADLLANAITV 389 (518)
T ss_pred hhHHHHHHHHhh
Confidence 999999998864
|
|
| >KOG0340|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-33 Score=277.56 Aligned_cols=251 Identities=32% Similarity=0.491 Sum_probs=208.3
Q ss_pred CCCccCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHH
Q psy15524 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKL 80 (930)
Q Consensus 1 ~g~~~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~ 80 (930)
||++.|||+|+.|||.|++|+|+|.+|.||||||.+|.+|+++++... ..|..++|+.||+||+.|+.++|..+
T Consensus 25 l~i~~pTpiQ~~cIpkILeGrdcig~AkTGsGKT~AFaLPil~rLsed------P~giFalvlTPTrELA~QiaEQF~al 98 (442)
T KOG0340|consen 25 LGIKKPTPIQQACIPKILEGRDCIGCAKTGSGKTAAFALPILNRLSED------PYGIFALVLTPTRELALQIAEQFIAL 98 (442)
T ss_pred hcCCCCCchHhhhhHHHhcccccccccccCCCcchhhhHHHHHhhccC------CCcceEEEecchHHHHHHHHHHHHHh
Confidence 689999999999999999999999999999999999999999999762 35778999999999999999999999
Q ss_pred hhhcCCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcC---CCccCCCccEEEEcccccccccCcHHHHHHH
Q psy15524 81 CKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHT---ETLKFSKVEHLVLDEADRILDQGYERDIAEF 157 (930)
Q Consensus 81 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~---~~~~l~~l~~vViDE~h~~~~~~~~~~~~~i 157 (930)
+..++ .+++.++||.+.-.+...+..++|++|+|||++-+++.++ ....+++++++|+||||.+++..|...+.-+
T Consensus 99 Gk~l~-lK~~vivGG~d~i~qa~~L~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlkflVlDEADrvL~~~f~d~L~~i 177 (442)
T KOG0340|consen 99 GKLLN-LKVSVIVGGTDMIMQAAILSDRPHVVVATPGRLADHLSSNLGVCSWIFQRLKFLVLDEADRVLAGCFPDILEGI 177 (442)
T ss_pred ccccc-ceEEEEEccHHHhhhhhhcccCCCeEecCccccccccccCCccchhhhhceeeEEecchhhhhccchhhHHhhh
Confidence 88766 8899999999999999999999999999999999998876 3445899999999999999998887777766
Q ss_pred HHHHhhcCCCceEEEEEeecCCCccccccccccccccccchhhhhhhhhhhccchhhHHHHHHHHhhcCcCceEEEEecc
Q psy15524 158 LEILKKQKPQFQSILLSATLTPATCWCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSAT 237 (930)
Q Consensus 158 ~~~l~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~de~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~sat 237 (930)
.+.++.. +|+++||||
T Consensus 178 ~e~lP~~----------------------------------------------------------------RQtLlfSAT 193 (442)
T KOG0340|consen 178 EECLPKP----------------------------------------------------------------RQTLLFSAT 193 (442)
T ss_pred hccCCCc----------------------------------------------------------------cceEEEEee
Confidence 6555432 378888888
Q ss_pred cchHHHHhhhccccCCeeeccCCcccccCCCcccccCCCceeEEEEcCcchhHHHHHHHHhhhccccccCCcceEEEEEe
Q psy15524 238 LTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMA 317 (930)
Q Consensus 238 ~~~~~~~l~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~iVF~~ 317 (930)
++..+..+..--...+.-+... ..+..+.++.+.+.|+.++...|...|+.+|.++ .....+.++||+|
T Consensus 194 itd~i~ql~~~~i~k~~a~~~e-------~~~~vstvetL~q~yI~~~~~vkdaYLv~~Lr~~----~~~~~~simIFvn 262 (442)
T KOG0340|consen 194 ITDTIKQLFGCPITKSIAFELE-------VIDGVSTVETLYQGYILVSIDVKDAYLVHLLRDF----ENKENGSIMIFVN 262 (442)
T ss_pred hhhHHHHhhcCCcccccceEEe-------ccCCCCchhhhhhheeecchhhhHHHHHHHHhhh----hhccCceEEEEee
Confidence 8777766654433332111111 1122356788999999999999999999999765 3335689999999
Q ss_pred cccchhhhHHHHhhhh
Q psy15524 318 TQDMADYHTELLSTKK 333 (930)
Q Consensus 318 s~~~~~~l~~~L~~~~ 333 (930)
+..+|+.++..|+..+
T Consensus 263 ttr~cQ~l~~~l~~le 278 (442)
T KOG0340|consen 263 TTRECQLLSMTLKNLE 278 (442)
T ss_pred hhHHHHHHHHHHhhhc
Confidence 9999999999998653
|
|
| >KOG0326|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-33 Score=277.69 Aligned_cols=245 Identities=27% Similarity=0.482 Sum_probs=217.5
Q ss_pred CCCccCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHH
Q psy15524 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKL 80 (930)
Q Consensus 1 ~g~~~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~ 80 (930)
+||+.|+|+|+++||.++.|+|+|+-|..|+|||.+|++|+++.+.. ..+..++++++||+|||.|....++++
T Consensus 103 ~G~ekPSPiQeesIPiaLtGrdiLaRaKNGTGKT~a~~IP~Lekid~------~~~~IQ~~ilVPtrelALQtSqvc~~l 176 (459)
T KOG0326|consen 103 KGFEKPSPIQEESIPIALTGRDILARAKNGTGKTAAYCIPVLEKIDP------KKNVIQAIILVPTRELALQTSQVCKEL 176 (459)
T ss_pred hccCCCCCccccccceeecchhhhhhccCCCCCccceechhhhhcCc------cccceeEEEEeecchhhHHHHHHHHHH
Confidence 59999999999999999999999999999999999999999999865 455778999999999999999999999
Q ss_pred hhhcCCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCcHHHHHHHHHH
Q psy15524 81 CKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEI 160 (930)
Q Consensus 81 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~~~~~~~i~~~ 160 (930)
+.+++ +.+....||.+...+.-++...++++|+||+|++++... +...++++.++|+||||.+++..|.+.+..++..
T Consensus 177 skh~~-i~vmvttGGT~lrDDI~Rl~~~VH~~vgTPGRIlDL~~K-gVa~ls~c~~lV~DEADKlLs~~F~~~~e~li~~ 254 (459)
T KOG0326|consen 177 SKHLG-IKVMVTTGGTSLRDDIMRLNQTVHLVVGTPGRILDLAKK-GVADLSDCVILVMDEADKLLSVDFQPIVEKLISF 254 (459)
T ss_pred hcccC-eEEEEecCCcccccceeeecCceEEEEcCChhHHHHHhc-ccccchhceEEEechhhhhhchhhhhHHHHHHHh
Confidence 99888 888899999999988888889999999999999999876 6777999999999999999999999988888877
Q ss_pred HhhcCCCceEEEEEeecCCCccccccccccccccccchhhhhhhhhhhccchhhHHHHHHHHhhcCcCceEEEEecccch
Q psy15524 161 LKKQKPQFQSILLSATLTPATCWCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLTP 240 (930)
Q Consensus 161 l~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~de~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~sat~~~ 240 (930)
++..+ |.++||||+|-
T Consensus 255 lP~~r----------------------------------------------------------------QillySATFP~ 270 (459)
T KOG0326|consen 255 LPKER----------------------------------------------------------------QILLYSATFPL 270 (459)
T ss_pred CCccc----------------------------------------------------------------eeeEEecccch
Confidence 76543 88888888888
Q ss_pred HHHHhhhccccCCeeeccCCcccccCCCcccccCCCceeEEEEcCcchhHHHHHHHHhhhccccccCCcceEEEEEeccc
Q psy15524 241 AVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQD 320 (930)
Q Consensus 241 ~~~~l~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~iVF~~s~~ 320 (930)
.+..+.++++.+|+.+-.-.. ..+..+.|+|.++.+..|+-+|-.++. .-.-.++|||||+..
T Consensus 271 tVk~Fm~~~l~kPy~INLM~e----------Ltl~GvtQyYafV~e~qKvhCLntLfs-------kLqINQsIIFCNS~~ 333 (459)
T KOG0326|consen 271 TVKGFMDRHLKKPYEINLMEE----------LTLKGVTQYYAFVEERQKVHCLNTLFS-------KLQINQSIIFCNSTN 333 (459)
T ss_pred hHHHHHHHhccCcceeehhhh----------hhhcchhhheeeechhhhhhhHHHHHH-------HhcccceEEEeccch
Confidence 899999999999988744332 235679999999999999999988883 334568899999999
Q ss_pred chhhhHHHHhhhhh
Q psy15524 321 MADYHTELLSTKKK 334 (930)
Q Consensus 321 ~~~~l~~~L~~~~~ 334 (930)
++|-+|..+.+.|.
T Consensus 334 rVELLAkKITelGy 347 (459)
T KOG0326|consen 334 RVELLAKKITELGY 347 (459)
T ss_pred HhHHHHHHHHhccc
Confidence 99999999988774
|
|
| >PRK13766 Hef nuclease; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-30 Score=316.71 Aligned_cols=335 Identities=24% Similarity=0.325 Sum_probs=233.3
Q ss_pred CCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHHHHhh
Q psy15524 411 NITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLC 490 (930)
Q Consensus 411 ~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~ 490 (930)
+.-+++++|..++..++.+ |+++++|||+|||+++++++...+. ..+.++|||+||++|+.|+.+.+++++
T Consensus 12 ~~~~~r~yQ~~~~~~~l~~-n~lv~~ptG~GKT~~a~~~i~~~l~--------~~~~~vLvl~Pt~~L~~Q~~~~~~~~~ 82 (773)
T PRK13766 12 NTIEARLYQQLLAATALKK-NTLVVLPTGLGKTAIALLVIAERLH--------KKGGKVLILAPTKPLVEQHAEFFRKFL 82 (773)
T ss_pred CcCCccHHHHHHHHHHhcC-CeEEEcCCCccHHHHHHHHHHHHHH--------hCCCeEEEEeCcHHHHHHHHHHHHHHh
Confidence 3447899999999988877 9999999999999999999988773 235689999999999999999999876
Q ss_pred ccCCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhccCCcccccceEEEEecchhhhhcCcHHHHHHHHHHH
Q psy15524 491 KSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEIL 570 (930)
Q Consensus 491 ~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~l~~~g~~~~l~~i~~~l 570 (930)
.... ..+..++|+.... +...+..+++|+|+||+.+...+.. ..+.+.+++++|+||||++........ +....
T Consensus 83 ~~~~-~~v~~~~g~~~~~-~r~~~~~~~~iiv~T~~~l~~~l~~-~~~~~~~~~liVvDEaH~~~~~~~~~~---i~~~~ 156 (773)
T PRK13766 83 NIPE-EKIVVFTGEVSPE-KRAELWEKAKVIVATPQVIENDLIA-GRISLEDVSLLIFDEAHRAVGNYAYVY---IAERY 156 (773)
T ss_pred CCCC-ceEEEEeCCCCHH-HHHHHHhCCCEEEECHHHHHHHHHc-CCCChhhCcEEEEECCccccccccHHH---HHHHH
Confidence 5322 2345566665543 4455667889999999999776654 456788999999999999875432222 23333
Q ss_pred hhcCccceEEEEccccCHH---HHHHHhhhcCCCEEEE--------------------ccCCCCccc-------------
Q psy15524 571 KKQKPQFQSILLSATLTPA---VQRLAGMTLQNPIQID--------------------AADSTDIHN------------- 614 (930)
Q Consensus 571 ~~~~~~~q~vl~SAT~~~~---~~~l~~~~~~~~~~i~--------------------~~~~~~~~~------------- 614 (930)
.......++++||||+... +..+........+.+. +.-......
T Consensus 157 ~~~~~~~~il~lTaTP~~~~~~i~~~~~~L~i~~v~~~~~~~~~v~~~~~~~~v~~~~v~l~~~~~~i~~~l~~~~~~~l 236 (773)
T PRK13766 157 HEDAKNPLVLGLTASPGSDEEKIKEVCENLGIEHVEVRTEDDPDVKPYVHKVKIEWVRVELPEELKEIRDLLNEALKDRL 236 (773)
T ss_pred HhcCCCCEEEEEEcCCCCCHHHHHHHHHhCCceEEEEcCCCChhHHhhhccceeEEEEeCCcHHHHHHHHHHHHHHHHHH
Confidence 3333466799999998533 2222222211111110 000000000
Q ss_pred --Ccc-ceecCCC--------------ceEE-------------------------------------------------
Q psy15524 615 --TTD-SLVIPDS--------------LKQH------------------------------------------------- 628 (930)
Q Consensus 615 --~~~-~~~~~~~--------------~~~~------------------------------------------------- 628 (930)
... ....+.. +...
T Consensus 237 ~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~y~~~l~~~~~~ 316 (773)
T PRK13766 237 KKLKELGVIVSISPDVSKKELLGLQKKLQQEIANDDSEGYEAISILAEAMKLRHAVELLETQGVEALRRYLERLREEARS 316 (773)
T ss_pred HHHHHCCCcccCCCCcCHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhhccc
Confidence 000 0000000 0000
Q ss_pred -----------------------EEEcCchhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCCc
Q psy15524 629 -----------------------FIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENI 685 (930)
Q Consensus 629 -----------------------~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~ 685 (930)
........|...+..++...... ..+.++||||.+++.++.+++.|... ++
T Consensus 317 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~pK~~~L~~il~~~~~~---~~~~kvlIF~~~~~t~~~L~~~L~~~---~~ 390 (773)
T PRK13766 317 SGGSKASKRLVEDPRFRKAVRKAKELDIEHPKLEKLREIVKEQLGK---NPDSRIIVFTQYRDTAEKIVDLLEKE---GI 390 (773)
T ss_pred cCCcHHHHHHHhCHHHHHHHHHHHhcccCChHHHHHHHHHHHHHhc---CCCCeEEEEeCcHHHHHHHHHHHHhC---CC
Confidence 00011123444444444443321 23789999999999999999999654 67
Q ss_pred eEEEecCC--------CCHHHHHHHHHHhhcCCCcEEEeccccccccCCCCccEEEEecCCCChhhHHhhhcccccCCCC
Q psy15524 686 AFFKLHGS--------MSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHE 757 (930)
Q Consensus 686 ~~~~lhg~--------~~~~~R~~v~~~F~~~~~~vLv~T~~~~~GlDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~ 757 (930)
.+..+||. |++.+|..++++|++|+.+|||||+++++|+|+|++++||+||+|.+...|+||+||+||.|.
T Consensus 391 ~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~eGldi~~~~~VI~yd~~~s~~r~iQR~GR~gR~~~- 469 (773)
T PRK13766 391 KAVRFVGQASKDGDKGMSQKEQIEILDKFRAGEFNVLVSTSVAEEGLDIPSVDLVIFYEPVPSEIRSIQRKGRTGRQEE- 469 (773)
T ss_pred ceEEEEccccccccCCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccCcCCC-
Confidence 77778876 999999999999999999999999999999999999999999999999999999999999864
Q ss_pred ceEEEEeCcc
Q psy15524 758 GSSLLFLIPS 767 (930)
Q Consensus 758 g~~~~~~~~~ 767 (930)
|.+++++...
T Consensus 470 ~~v~~l~~~~ 479 (773)
T PRK13766 470 GRVVVLIAKG 479 (773)
T ss_pred CEEEEEEeCC
Confidence 8888888753
|
|
| >KOG0354|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-31 Score=296.10 Aligned_cols=339 Identities=23% Similarity=0.347 Sum_probs=233.4
Q ss_pred CCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHHHHhh
Q psy15524 411 NITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLC 490 (930)
Q Consensus 411 ~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~ 490 (930)
..-.++.+|.+.+..+| |+|++|++|||+|||+++..-++.++.. .+..++|+++||+-|+.|+.+.+...+
T Consensus 59 ~~~~lR~YQ~eivq~AL-gkNtii~lPTG~GKTfIAa~Vm~nh~rw-------~p~~KiVF~aP~~pLv~QQ~a~~~~~~ 130 (746)
T KOG0354|consen 59 TNLELRNYQEELVQPAL-GKNTIIALPTGSGKTFIAAVIMKNHFEW-------RPKGKVVFLAPTRPLVNQQIACFSIYL 130 (746)
T ss_pred CcccccHHHHHHhHHhh-cCCeEEEeecCCCccchHHHHHHHHHhc-------CCcceEEEeeCCchHHHHHHHHHhhcc
Confidence 34478999999999999 9999999999999999999999998875 234789999999999999997777776
Q ss_pred ccCCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhccCCcccccceEEEEecchhhhhcC-cHHHHHHHHHH
Q psy15524 491 KSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQG-YERDIAEFLEI 569 (930)
Q Consensus 491 ~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~l~~~g-~~~~l~~i~~~ 569 (930)
.. +. .....||+....-...+....+|+|+||.-+.+.+.+.....++.+.++||||||+-.... +...+...+..
T Consensus 131 ~~--~~-~T~~l~~~~~~~~r~~i~~s~~vff~TpQil~ndL~~~~~~~ls~fs~iv~DE~Hra~kn~~Y~~Vmr~~l~~ 207 (746)
T KOG0354|consen 131 IP--YS-VTGQLGDTVPRSNRGEIVASKRVFFRTPQILENDLKSGLHDELSDFSLIVFDECHRTSKNHPYNNIMREYLDL 207 (746)
T ss_pred Cc--cc-ceeeccCccCCCchhhhhcccceEEeChHhhhhhcccccccccceEEEEEEcccccccccccHHHHHHHHHHh
Confidence 54 22 2334556554444556777899999999999888876444447899999999999976544 22333233322
Q ss_pred HhhcCccceEEEEccccCHHHHHHHhhhcC---C----------------------CEEEEccCC---------------
Q psy15524 570 LKKQKPQFQSILLSATLTPAVQRLAGMTLQ---N----------------------PIQIDAADS--------------- 609 (930)
Q Consensus 570 l~~~~~~~q~vl~SAT~~~~~~~l~~~~~~---~----------------------~~~i~~~~~--------------- 609 (930)
-. ...|++++|||+............. + |+.+.....
T Consensus 208 k~---~~~qILgLTASpG~~~~~v~~~I~~L~asldvr~~ssi~~~y~~lr~~~~i~v~~~~~~~~~~~~f~~~i~p~l~ 284 (746)
T KOG0354|consen 208 KN---QGNQILGLTASPGSKLEQVQNVIDNLCASLDVRTESSIKSNYEELREHVQIPVDLSLCERDIEDPFGMIIEPLLQ 284 (746)
T ss_pred hh---ccccEEEEecCCCccHHHHHHHHHhhheecccchhhhhhhhHHHHhccCcccCcHHHhhhhhhhhHHHHHHHHHH
Confidence 22 2349999999997543322111100 0 000000000
Q ss_pred ----------CCcc------------------cCccc--------------eecCCCce---------------------
Q psy15524 610 ----------TDIH------------------NTTDS--------------LVIPDSLK--------------------- 626 (930)
Q Consensus 610 ----------~~~~------------------~~~~~--------------~~~~~~~~--------------------- 626 (930)
.... ...+. ..+...++
T Consensus 285 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~f~~~~~~~~~~~ll~~~gir~~~~l~~~~~f~~e~~~~k~~ 364 (746)
T KOG0354|consen 285 QLQEEGLIEISDKSTSYEQWVVQAEKAAAPNGPENQRNCFYALHLRKYNLALLISDGIRFVDALDYLEDFYEEVALKKYL 364 (746)
T ss_pred HHHhcCccccccccccccchhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHhhcchhhHHHHhhhhhhccccchhHHH
Confidence 0000 00000 00000000
Q ss_pred -------------------EEEEEcC--chhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCCc
Q psy15524 627 -------------------QHFIVTP--PKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENI 685 (930)
Q Consensus 627 -------------------~~~~~~~--~~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~ 685 (930)
+.+...+ ...++..+...+..... .....++|||+.+++.|..+..+|.+....++
T Consensus 365 ~~~~e~~~~~~~~~~m~~~~~l~~~~~~~npkle~l~~~l~e~f~---~~~dsR~IIFve~R~sa~~l~~~l~~~~~~~i 441 (746)
T KOG0354|consen 365 KLELEARLIRNFTENMNELEHLSLDPPKENPKLEKLVEILVEQFE---QNPDSRTIIFVETRESALALKKWLLQLHELGI 441 (746)
T ss_pred HHHhcchhhHHHHHHHHhhhhhhcCCCccChhHHHHHHHHHHHhh---cCCCccEEEEEehHHHHHHHHHHHHhhhhccc
Confidence 0000111 13345555555555443 22478999999999999999999886433334
Q ss_pred eEEEec--------CCCCHHHHHHHHHHhhcCCCcEEEeccccccccCCCCccEEEEecCCCChhhHHhhhcccccCCCC
Q psy15524 686 AFFKLH--------GSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHE 757 (930)
Q Consensus 686 ~~~~lh--------g~~~~~~R~~v~~~F~~~~~~vLv~T~~~~~GlDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~ 757 (930)
....+- .+|+|.++.+++++|++|+.+|||||+++++|+||+.|++||-||.-.++...+||.|| ||+ +.
T Consensus 442 r~~~fiGq~~s~~~~gmtqk~Q~evl~~Fr~G~~NvLVATSV~EEGLDI~ec~lVIcYd~~snpIrmIQrrGR-gRa-~n 519 (746)
T KOG0354|consen 442 KAEIFIGQGKSTQSTGMTQKEQKEVLDKFRDGEINVLVATSVAEEGLDIGECNLVICYDYSSNPIRMVQRRGR-GRA-RN 519 (746)
T ss_pred ccceeeeccccccccccCHHHHHHHHHHHhCCCccEEEEecchhccCCcccccEEEEecCCccHHHHHHHhcc-ccc-cC
Confidence 333333 38999999999999999999999999999999999999999999999999999999999 996 47
Q ss_pred ceEEEEeCccc
Q psy15524 758 GSSLLFLIPSE 768 (930)
Q Consensus 758 g~~~~~~~~~e 768 (930)
|.++++++..+
T Consensus 520 s~~vll~t~~~ 530 (746)
T KOG0354|consen 520 SKCVLLTTGSE 530 (746)
T ss_pred CeEEEEEcchh
Confidence 88888888543
|
|
| >PRK12899 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.98 E-value=2e-30 Score=298.25 Aligned_cols=146 Identities=18% Similarity=0.222 Sum_probs=122.4
Q ss_pred CCCHHHHHHHHh----cCCCCCC---CHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeE
Q psy15524 397 GIHPFMKKNLNE----GMNITQV---TTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYA 469 (930)
Q Consensus 397 ~l~~~~~~~l~~----~~~~~~~---~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~ 469 (930)
++.+++.+.+.- .+||..| ||+|.++||.++.++|++++|+||+|||++|++|++..+.. +..+
T Consensus 68 al~re~~~r~lg~~~~~~G~~~p~~~tp~qvQ~I~~i~l~~gvIAeaqTGeGKTLAf~LP~l~~aL~---------g~~v 138 (970)
T PRK12899 68 GVVKNVCRRLAGTPVEVSGYHQQWDMVPYDVQILGAIAMHKGFITEMQTGEGKTLTAVMPLYLNALT---------GKPV 138 (970)
T ss_pred CCCHHHHHHHhccccccccccCCCCCChHHHHHhhhhhcCCCeEEEeCCCCChHHHHHHHHHHHHhh---------cCCe
Confidence 677777776652 4688887 99999999999999999999999999999999999988764 2348
Q ss_pred EEEccCHHHHHHHHHHHHHhhccCCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhH-HHhhhccCCccc-------c
Q psy15524 470 VIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRL-LDHCKHTETLKF-------S 541 (930)
Q Consensus 470 lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl-~~~l~~~~~~~~-------~ 541 (930)
+||+||++||.|+++.+..++...+ +.++++.||.+...+.... +++|+|+|||+| .++++.. .+.+ +
T Consensus 139 ~IVTpTrELA~Qdae~m~~L~k~lG-LsV~~i~GG~~~~eq~~~y--~~DIVygTPgRLgfDyLrd~-~~~~~~~~~vqr 214 (970)
T PRK12899 139 HLVTVNDYLAQRDCEWVGSVLRWLG-LTTGVLVSGSPLEKRKEIY--QCDVVYGTASEFGFDYLRDN-SIATRKEEQVGR 214 (970)
T ss_pred EEEeCCHHHHHHHHHHHHHHHhhcC-CeEEEEeCCCCHHHHHHHc--CCCEEEECCChhHHHHhhCC-CCCcCHHHhhcc
Confidence 9999999999999999999987665 6677889998877665443 699999999999 9999863 2333 3
Q ss_pred cceEEEEecchhhh
Q psy15524 542 KVEHLVLDEADRIL 555 (930)
Q Consensus 542 ~l~~lVlDEah~l~ 555 (930)
.+.++||||||.|+
T Consensus 215 ~~~~~IIDEADsmL 228 (970)
T PRK12899 215 GFYFAIIDEVDSIL 228 (970)
T ss_pred cccEEEEechhhhh
Confidence 56899999999986
|
|
| >KOG0328|consensus | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.8e-32 Score=266.24 Aligned_cols=244 Identities=27% Similarity=0.450 Sum_probs=211.0
Q ss_pred CCCccCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHH
Q psy15524 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKL 80 (930)
Q Consensus 1 ~g~~~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~ 80 (930)
.||+.|+.+|+.|++.++.|+|++++|..|+|||.+|.+.+++.+.. .....++|+|+|||||+.|+.+.+..+
T Consensus 45 yGfekPS~IQqrAi~~IlkGrdViaQaqSGTGKTa~~si~vlq~~d~------~~r~tQ~lilsPTRELa~Qi~~vi~al 118 (400)
T KOG0328|consen 45 YGFEKPSAIQQRAIPQILKGRDVIAQAQSGTGKTATFSISVLQSLDI------SVRETQALILSPTRELAVQIQKVILAL 118 (400)
T ss_pred hccCCchHHHhhhhhhhhcccceEEEecCCCCceEEEEeeeeeeccc------ccceeeEEEecChHHHHHHHHHHHHHh
Confidence 48999999999999999999999999999999999999999987754 234578999999999999999999999
Q ss_pred hhhcCCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCcHHHHHHHHHH
Q psy15524 81 CKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEI 160 (930)
Q Consensus 81 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~~~~~~~i~~~ 160 (930)
+.+++ +.+..+.||.+..+..+.+.-+.+++.|||+++.+++.+ +.+..+.++++|+||||.|++.||..++..+.+.
T Consensus 119 g~~mn-vq~hacigg~n~gedikkld~G~hvVsGtPGrv~dmikr-~~L~tr~vkmlVLDEaDemL~kgfk~Qiydiyr~ 196 (400)
T KOG0328|consen 119 GDYMN-VQCHACIGGKNLGEDIKKLDYGQHVVSGTPGRVLDMIKR-RSLRTRAVKMLVLDEADEMLNKGFKEQIYDIYRY 196 (400)
T ss_pred ccccc-ceEEEEecCCccchhhhhhcccceEeeCCCchHHHHHHh-ccccccceeEEEeccHHHHHHhhHHHHHHHHHHh
Confidence 98777 677778899998888888889999999999999999987 6777899999999999999999999888887776
Q ss_pred HhhcCCCceEEEEEeecCCCccccccccccccccccchhhhhhhhhhhccchhhHHHHHHHHhhcCcCceEEEEecccch
Q psy15524 161 LKKQKPQFQSILLSATLTPATCWCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLTP 240 (930)
Q Consensus 161 l~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~de~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~sat~~~ 240 (930)
++... |.+++|||+|.
T Consensus 197 lp~~~----------------------------------------------------------------Qvv~~SATlp~ 212 (400)
T KOG0328|consen 197 LPPGA----------------------------------------------------------------QVVLVSATLPH 212 (400)
T ss_pred CCCCc----------------------------------------------------------------eEEEEeccCcH
Confidence 64332 88888888999
Q ss_pred HHHHhhhccccCCeeeccCCcccccCCCcccccCCCceeEEEEcCcch-hHHHHHHHHhhhccccccCCcceEEEEEecc
Q psy15524 241 AVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKL-RLVALASFILGKCQNVNEDEESKMLVFMATQ 319 (930)
Q Consensus 241 ~~~~l~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-k~~~l~~~l~~~~~~~~~~~~~~~iVF~~s~ 319 (930)
.+....+.++.+|+.+-+...+ ...+.|.++|+.++.++ |...|.++... -.-.+++|||||+
T Consensus 213 eilemt~kfmtdpvrilvkrde---------ltlEgIKqf~v~ve~EewKfdtLcdLYd~-------LtItQavIFcnTk 276 (400)
T KOG0328|consen 213 EILEMTEKFMTDPVRILVKRDE---------LTLEGIKQFFVAVEKEEWKFDTLCDLYDT-------LTITQAVIFCNTK 276 (400)
T ss_pred HHHHHHHHhcCCceeEEEecCC---------CchhhhhhheeeechhhhhHhHHHHHhhh-------hehheEEEEeccc
Confidence 9999999999999988766554 23456999999988766 99988887732 2446899999999
Q ss_pred cchhhhHHHHhhh
Q psy15524 320 DMADYHTELLSTK 332 (930)
Q Consensus 320 ~~~~~l~~~L~~~ 332 (930)
..++.+.+.+++.
T Consensus 277 ~kVdwLtekm~~~ 289 (400)
T KOG0328|consen 277 RKVDWLTEKMREA 289 (400)
T ss_pred chhhHHHHHHHhh
Confidence 9999999988764
|
|
| >KOG0339|consensus | Back alignment and domain information |
|---|
Probab=99.98 E-value=9e-32 Score=280.83 Aligned_cols=249 Identities=30% Similarity=0.470 Sum_probs=216.1
Q ss_pred CccCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHHhh
Q psy15524 3 ITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCK 82 (930)
Q Consensus 3 ~~~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~ 82 (930)
|+.|||+|.+++|..+.|+|++.+|.||||||.+|+.|++.++..+.. ....+|+-.||++||++||.|++.++++++.
T Consensus 243 y~kptpiq~qalptalsgrdvigIAktgSgktaAfi~pm~~himdq~e-L~~g~gPi~vilvPTrela~Qi~~eaKkf~K 321 (731)
T KOG0339|consen 243 YEKPTPIQCQALPTALSGRDVIGIAKTGSGKTAAFIWPMIVHIMDQPE-LKPGEGPIGVILVPTRELASQIFSEAKKFGK 321 (731)
T ss_pred cccCCcccccccccccccccchheeeccCcchhHHHHHHHHHhcchhh-hcCCCCCeEEEEeccHHHHHHHHHHHHHhhh
Confidence 778999999999999999999999999999999999999999987433 3346789999999999999999999999998
Q ss_pred hcCCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCcHHHHHHHHHHHh
Q psy15524 83 SFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILK 162 (930)
Q Consensus 83 ~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~~~~~~~i~~~l~ 162 (930)
.++ +.+.+++||...-++...|..++.|+||||+||++++.. +...+.++.++|+||+|+|++.||+++++.|...++
T Consensus 322 ~yg-l~~v~~ygGgsk~eQ~k~Lk~g~EivVaTPgRlid~Vkm-Katn~~rvS~LV~DEadrmfdmGfe~qVrSI~~hir 399 (731)
T KOG0339|consen 322 AYG-LRVVAVYGGGSKWEQSKELKEGAEIVVATPGRLIDMVKM-KATNLSRVSYLVLDEADRMFDMGFEPQVRSIKQHIR 399 (731)
T ss_pred hcc-ceEEEeecCCcHHHHHHhhhcCCeEEEechHHHHHHHHh-hcccceeeeEEEEechhhhhccccHHHHHHHHhhcC
Confidence 777 778888899888889999999999999999999999876 777899999999999999999999999888776553
Q ss_pred hcCCCceEEEEEeecCCCccccccccccccccccchhhhhhhhhhhccchhhHHHHHHHHhhcCcCceEEEEecccchHH
Q psy15524 163 KQKPQFQSILLSATLTPATCWCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLTPAV 242 (930)
Q Consensus 163 ~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~de~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~sat~~~~~ 242 (930)
+++|+++||+|++..+
T Consensus 400 ----------------------------------------------------------------pdrQtllFsaTf~~kI 415 (731)
T KOG0339|consen 400 ----------------------------------------------------------------PDRQTLLFSATFKKKI 415 (731)
T ss_pred ----------------------------------------------------------------CcceEEEeeccchHHH
Confidence 3459999999999999
Q ss_pred HHhhhccccCCeeeccCCcccccCCCcccccCCCceeEEEEcCc-chhHHHHHHHHhhhccccccCCcceEEEEEecccc
Q psy15524 243 QRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPP-KLRLVALASFILGKCQNVNEDEESKMLVFMATQDM 321 (930)
Q Consensus 243 ~~l~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~k~~~l~~~l~~~~~~~~~~~~~~~iVF~~s~~~ 321 (930)
+.+++.+|.+|+.+....-. .....|.|.+.+++. ..|+..|+..|.+ ....+++|||+.-+.+
T Consensus 416 e~lard~L~dpVrvVqg~vg---------ean~dITQ~V~V~~s~~~Kl~wl~~~L~~------f~S~gkvlifVTKk~~ 480 (731)
T KOG0339|consen 416 EKLARDILSDPVRVVQGEVG---------EANEDITQTVSVCPSEEKKLNWLLRHLVE------FSSEGKVLIFVTKKAD 480 (731)
T ss_pred HHHHHHHhcCCeeEEEeehh---------ccccchhheeeeccCcHHHHHHHHHHhhh------hccCCcEEEEEeccCC
Confidence 99999999999887655332 124678999888875 5688888877743 4566799999999999
Q ss_pred hhhhHHHHhhhh
Q psy15524 322 ADYHTELLSTKK 333 (930)
Q Consensus 322 ~~~l~~~L~~~~ 333 (930)
+++++..|+-++
T Consensus 481 ~e~i~a~Lklk~ 492 (731)
T KOG0339|consen 481 AEEIAANLKLKG 492 (731)
T ss_pred HHHHHHHhcccc
Confidence 999999987554
|
|
| >KOG0336|consensus | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.4e-32 Score=276.81 Aligned_cols=252 Identities=31% Similarity=0.470 Sum_probs=214.1
Q ss_pred CCCccCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHH
Q psy15524 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKL 80 (930)
Q Consensus 1 ~g~~~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~ 80 (930)
+||..|||+|.+|||.++.|.|++.+|.||+|||++|++|.+.++..+.......+++.+|++.||++|+.|+.-++.+.
T Consensus 238 ~GFqKPtPIqSQaWPI~LQG~DliGVAQTgtgKtL~~L~pg~ihi~aqp~~~~qr~~p~~lvl~ptreLalqie~e~~ky 317 (629)
T KOG0336|consen 238 TGFQKPTPIQSQAWPILLQGIDLIGVAQTGTGKTLAFLLPGFIHIDAQPKRREQRNGPGVLVLTPTRELALQIEGEVKKY 317 (629)
T ss_pred ccCCCCCcchhcccceeecCcceEEEEecCCCcCHHHhccceeeeeccchhhhccCCCceEEEeccHHHHHHHHhHHhHh
Confidence 59999999999999999999999999999999999999999999877665555567888999999999999999888777
Q ss_pred hhhcCCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCcHHHHHHHHHH
Q psy15524 81 CKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEI 160 (930)
Q Consensus 81 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~~~~~~~i~~~ 160 (930)
. +......|++||.+..++.+.+.++++|+++||++|.++... +.+.+..+.|+|+||||.|+|.||+++++.|+-.
T Consensus 318 s--yng~ksvc~ygggnR~eqie~lkrgveiiiatPgrlndL~~~-n~i~l~siTYlVlDEADrMLDMgFEpqIrkilld 394 (629)
T KOG0336|consen 318 S--YNGLKSVCVYGGGNRNEQIEDLKRGVEIIIATPGRLNDLQMD-NVINLASITYLVLDEADRMLDMGFEPQIRKILLD 394 (629)
T ss_pred h--hcCcceEEEecCCCchhHHHHHhcCceEEeeCCchHhhhhhc-CeeeeeeeEEEEecchhhhhcccccHHHHHHhhh
Confidence 5 334778889999999999999999999999999999998765 8889999999999999999999999999887744
Q ss_pred HhhcCCCceEEEEEeecCCCccccccccccccccccchhhhhhhhhhhccchhhHHHHHHHHhhcCcCceEEEEecccch
Q psy15524 161 LKKQKPQFQSILLSATLTPATCWCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLTP 240 (930)
Q Consensus 161 l~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~de~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~sat~~~ 240 (930)
++ +++|+++-|||||+
T Consensus 395 iR----------------------------------------------------------------PDRqtvmTSATWP~ 410 (629)
T KOG0336|consen 395 IR----------------------------------------------------------------PDRQTVMTSATWPE 410 (629)
T ss_pred cC----------------------------------------------------------------CcceeeeecccCch
Confidence 32 34599999999999
Q ss_pred HHHHhhhccccCCeeeccCCcccccCCCcccccCCCceeEEEEcCcchhHHHHHHHHhhhccccccCCcceEEEEEeccc
Q psy15524 241 AVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQD 320 (930)
Q Consensus 241 ~~~~l~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~iVF~~s~~ 320 (930)
.+.+|+.+|+.+|+.+.+..-. +..-..+.|.+++..+.+|++.+-.++. ......++||||.++.
T Consensus 411 ~VrrLa~sY~Kep~~v~vGsLd--------L~a~~sVkQ~i~v~~d~~k~~~~~~f~~------~ms~ndKvIiFv~~K~ 476 (629)
T KOG0336|consen 411 GVRRLAQSYLKEPMIVYVGSLD--------LVAVKSVKQNIIVTTDSEKLEIVQFFVA------NMSSNDKVIIFVSRKV 476 (629)
T ss_pred HHHHHHHHhhhCceEEEecccc--------eeeeeeeeeeEEecccHHHHHHHHHHHH------hcCCCceEEEEEechh
Confidence 9999999999999888655433 2234568888877777888876666663 3556689999999999
Q ss_pred chhhhHHHHhhhh
Q psy15524 321 MADYHTELLSTKK 333 (930)
Q Consensus 321 ~~~~l~~~L~~~~ 333 (930)
.|+.+..-+.-.|
T Consensus 477 ~AD~LSSd~~l~g 489 (629)
T KOG0336|consen 477 MADHLSSDFCLKG 489 (629)
T ss_pred hhhhccchhhhcc
Confidence 8888877765443
|
|
| >PRK11192 ATP-dependent RNA helicase SrmB; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-30 Score=297.91 Aligned_cols=247 Identities=32% Similarity=0.467 Sum_probs=195.7
Q ss_pred CCCccCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHH
Q psy15524 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKL 80 (930)
Q Consensus 1 ~g~~~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~ 80 (930)
+||..|+++|+++|+.+++|+|++++||||+|||++|++|+++++...... ...+.++||++||++|+.|+++.+..+
T Consensus 19 ~g~~~p~~iQ~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~~--~~~~~~~lil~Pt~eLa~Q~~~~~~~l 96 (434)
T PRK11192 19 KGYTRPTAIQAEAIPPALDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPRR--KSGPPRILILTPTRELAMQVADQAREL 96 (434)
T ss_pred CCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhhcccc--CCCCceEEEECCcHHHHHHHHHHHHHH
Confidence 599999999999999999999999999999999999999999998753221 223568999999999999999999999
Q ss_pred hhhcCCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCcHHHHHHHHHH
Q psy15524 81 CKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEI 160 (930)
Q Consensus 81 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~~~~~~~i~~~ 160 (930)
....+ +.+..++|+.....+...+..+++|+|+||++|++++.. ..+.+.++++|||||||+|++++|...+..+...
T Consensus 97 ~~~~~-~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~~~~-~~~~~~~v~~lViDEah~~l~~~~~~~~~~i~~~ 174 (434)
T PRK11192 97 AKHTH-LDIATITGGVAYMNHAEVFSENQDIVVATPGRLLQYIKE-ENFDCRAVETLILDEADRMLDMGFAQDIETIAAE 174 (434)
T ss_pred HccCC-cEEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHc-CCcCcccCCEEEEECHHHHhCCCcHHHHHHHHHh
Confidence 87665 788889999988888888888899999999999999876 6677899999999999999999999888777654
Q ss_pred HhhcCCCceEEEEEeecCCCccccccccccccccccchhhhhhhhhhhccchhhHHHHHHHHhhcCcCceEEEEecccch
Q psy15524 161 LKKQKPQFQSILLSATLTPATCWCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLTP 240 (930)
Q Consensus 161 l~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~de~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~sat~~~ 240 (930)
++. ..|+++|||| ++.
T Consensus 175 ~~~---~~q~~~~SAT-------------------------------------------------------------~~~ 190 (434)
T PRK11192 175 TRW---RKQTLLFSAT-------------------------------------------------------------LEG 190 (434)
T ss_pred Ccc---ccEEEEEEee-------------------------------------------------------------cCH
Confidence 432 2244555555 442
Q ss_pred -HHHHhhhccccCCeeeccCCcccccCCCcccccCCCceeEEEEcCc-chhHHHHHHHHhhhccccccCCcceEEEEEec
Q psy15524 241 -AVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPP-KLRLVALASFILGKCQNVNEDEESKMLVFMAT 318 (930)
Q Consensus 241 -~~~~l~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~k~~~l~~~l~~~~~~~~~~~~~~~iVF~~s 318 (930)
.+..+...++.++..+...... .....+.+.+..++. ..|...|..++ ......++||||++
T Consensus 191 ~~~~~~~~~~~~~~~~i~~~~~~---------~~~~~i~~~~~~~~~~~~k~~~l~~l~-------~~~~~~~~lVF~~s 254 (434)
T PRK11192 191 DAVQDFAERLLNDPVEVEAEPSR---------RERKKIHQWYYRADDLEHKTALLCHLL-------KQPEVTRSIVFVRT 254 (434)
T ss_pred HHHHHHHHHHccCCEEEEecCCc---------ccccCceEEEEEeCCHHHHHHHHHHHH-------hcCCCCeEEEEeCC
Confidence 2455555566667666544332 123457777776654 56777777777 33456799999999
Q ss_pred ccchhhhHHHHhh
Q psy15524 319 QDMADYHTELLST 331 (930)
Q Consensus 319 ~~~~~~l~~~L~~ 331 (930)
++.++.++..|+.
T Consensus 255 ~~~~~~l~~~L~~ 267 (434)
T PRK11192 255 RERVHELAGWLRK 267 (434)
T ss_pred hHHHHHHHHHHHh
Confidence 9999999999975
|
|
| >KOG0353|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.4e-31 Score=263.54 Aligned_cols=337 Identities=20% Similarity=0.284 Sum_probs=252.2
Q ss_pred CCCCCCCHHHHHHHHhcCCCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEE
Q psy15524 393 EEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVII 472 (930)
Q Consensus 393 ~~l~~l~~~~~~~l~~~~~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil 472 (930)
++| +.+....+.|++.|..+.++|.|..+|++.+.|+|+++..|||.||++||.+|++- ....+||+
T Consensus 74 d~f-pws~e~~~ilk~~f~lekfrplq~~ain~~ma~ed~~lil~tgggkslcyqlpal~------------adg~alvi 140 (695)
T KOG0353|consen 74 DDF-PWSDEAKDILKEQFHLEKFRPLQLAAINATMAGEDAFLILPTGGGKSLCYQLPALC------------ADGFALVI 140 (695)
T ss_pred CCC-CCchHHHHHHHHHhhHHhcChhHHHHhhhhhccCceEEEEeCCCccchhhhhhHHh------------cCCceEee
Confidence 345 57777888888889999999999999999999999999999999999999999983 25569999
Q ss_pred ccCHHHHHHHHHHHHHhhccCCCcceEEEeCCCchHHHHHHH-----h--cCCcEEEECchhHHHh---hhc-cCCcccc
Q psy15524 473 LPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARI-----R--KGISILVATPGRLLDH---CKH-TETLKFS 541 (930)
Q Consensus 473 ~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~-----~--~~~~Ilv~Tp~rl~~~---l~~-~~~~~~~ 541 (930)
+|...|+..+.-.++.++-....+. ... .+.+..+. . ....+++.||+++... +.+ .+.+...
T Consensus 141 ~plislmedqil~lkqlgi~as~ln-----ans-ske~~k~v~~~i~nkdse~kliyvtpekiaksk~~mnkleka~~~~ 214 (695)
T KOG0353|consen 141 CPLISLMEDQILQLKQLGIDASMLN-----ANS-SKEEAKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKLEKALEAG 214 (695)
T ss_pred chhHHHHHHHHHHHHHhCcchhhcc-----Ccc-cHHHHHHHHHHHcCCCceeEEEEecHHHHHHHHHHHHHHHHHhhcc
Confidence 9999999999888888875433221 111 12222221 1 2356999999988432 111 1344567
Q ss_pred cceEEEEecchhhhhcC--cHHHHHHHHHHHhhcCccceEEEEccccCHHHHHHHhhhcC--CCEEEEccCCCCcccCcc
Q psy15524 542 KVEHLVLDEADRILDQG--YERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQ--NPIQIDAADSTDIHNTTD 617 (930)
Q Consensus 542 ~l~~lVlDEah~l~~~g--~~~~l~~i~~~l~~~~~~~q~vl~SAT~~~~~~~l~~~~~~--~~~~i~~~~~~~~~~~~~ 617 (930)
.+.++-+||+|+...|| |+.++. .+..|++..++..+++++||.++.+.+-++..+- ........
T Consensus 215 ~~~~iaidevhccsqwghdfr~dy~-~l~ilkrqf~~~~iigltatatn~vl~d~k~il~ie~~~tf~a~---------- 283 (695)
T KOG0353|consen 215 FFKLIAIDEVHCCSQWGHDFRPDYK-ALGILKRQFKGAPIIGLTATATNHVLDDAKDILCIEAAFTFRAG---------- 283 (695)
T ss_pred eeEEEeecceeehhhhCcccCcchH-HHHHHHHhCCCCceeeeehhhhcchhhHHHHHHhHHhhheeecc----------
Confidence 78999999999999999 555544 4566666667889999999998876554443321 11111110
Q ss_pred ceecCCCceEEEEEcCc--hhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCC
Q psy15524 618 SLVIPDSLKQHFIVTPP--KLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMS 695 (930)
Q Consensus 618 ~~~~~~~~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~ 695 (930)
+. ...+...+..-|. ++-...++..+.. ... ++..||||-++..++.++..|+.. |+....+|+.|.
T Consensus 284 -fn-r~nl~yev~qkp~n~dd~~edi~k~i~~---~f~---gqsgiiyc~sq~d~ekva~alkn~---gi~a~~yha~le 352 (695)
T KOG0353|consen 284 -FN-RPNLKYEVRQKPGNEDDCIEDIAKLIKG---DFA---GQSGIIYCFSQKDCEKVAKALKNH---GIHAGAYHANLE 352 (695)
T ss_pred -cC-CCCceeEeeeCCCChHHHHHHHHHHhcc---ccC---CCcceEEEeccccHHHHHHHHHhc---CccccccccccC
Confidence 00 1122222222221 2223333333332 222 678899999999999999999986 888889999999
Q ss_pred HHHHHHHHHHhhcCCCcEEEeccccccccCCCCccEEEEecCCCChhhHHh-----------------------------
Q psy15524 696 QSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVH----------------------------- 746 (930)
Q Consensus 696 ~~~R~~v~~~F~~~~~~vLv~T~~~~~GlDip~v~~VI~~~~p~s~~~y~q----------------------------- 746 (930)
+++|..+-+.|..|++.|+|+|-++++|+|-|+|++|||..+|.|++.|.|
T Consensus 353 p~dks~~hq~w~a~eiqvivatvafgmgidkpdvrfvihhsl~ksienyyqasarillrmtkqknksdtggstqinilev 432 (695)
T KOG0353|consen 353 PEDKSGAHQGWIAGEIQVIVATVAFGMGIDKPDVRFVIHHSLPKSIENYYQASARILLRMTKQKNKSDTGGSTQINILEV 432 (695)
T ss_pred ccccccccccccccceEEEEEEeeecccCCCCCeeEEEecccchhHHHHHHHHHHHHHHHhhhcccccCCCcceeehhhh
Confidence 999999999999999999999999999999999999999999999999999
Q ss_pred --------------hhcccccCCCCceEEEEeCcccHH
Q psy15524 747 --------------RVGRTARVGHEGSSLLFLIPSEVK 770 (930)
Q Consensus 747 --------------r~GRagR~g~~g~~~~~~~~~e~~ 770 (930)
..||+||.+.+..|++++.-.+..
T Consensus 433 ctnfkiffavfsekesgragrd~~~a~cilyy~~~dif 470 (695)
T KOG0353|consen 433 CTNFKIFFAVFSEKESGRAGRDDMKADCILYYGFADIF 470 (695)
T ss_pred hccceeeeeeecchhccccccCCCcccEEEEechHHHH
Confidence 789999999999999998755543
|
|
| >PRK11131 ATP-dependent RNA helicase HrpA; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.7e-30 Score=309.78 Aligned_cols=304 Identities=21% Similarity=0.301 Sum_probs=207.3
Q ss_pred HhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEcc----CHHHHHHHHHHHHHhhccCCCc
Q psy15524 421 LSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILP----TRELALQTLEIFTKLCKSFTWI 496 (930)
Q Consensus 421 ~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~P----treLa~Q~~~~~~~~~~~~~~~ 496 (930)
+.+..+.+++.++++|+||||||. .+|.+-.-.. .+....+++.-| +++||.|+++++....+.
T Consensus 81 ~Il~ai~~~~VviI~GeTGSGKTT--qlPq~lle~g------~g~~g~I~~TQPRRlAArsLA~RVA~El~~~lG~---- 148 (1294)
T PRK11131 81 DILEAIRDHQVVIVAGETGSGKTT--QLPKICLELG------RGVKGLIGHTQPRRLAARTVANRIAEELETELGG---- 148 (1294)
T ss_pred HHHHHHHhCCeEEEECCCCCCHHH--HHHHHHHHcC------CCCCCceeeCCCcHHHHHHHHHHHHHHHhhhhcc----
Confidence 344445556678899999999999 5784422111 111123344446 568888888877653221
Q ss_pred ceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhccCCcccccceEEEEecch-hhhhcCcHHHHHHHHHHHhhcCc
Q psy15524 497 VPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEAD-RILDQGYERDIAEFLEILKKQKP 575 (930)
Q Consensus 497 ~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah-~l~~~g~~~~l~~i~~~l~~~~~ 575 (930)
.+++-+...+ ....+.+|+|+|||+|++++... ..++++++||||||| +.++.+|.. ..+...++. .+
T Consensus 149 ~VGY~vrf~~------~~s~~t~I~v~TpG~LL~~l~~d--~~Ls~~~~IIIDEAHERsLn~DfLL--g~Lk~lL~~-rp 217 (1294)
T PRK11131 149 CVGYKVRFND------QVSDNTMVKLMTDGILLAEIQQD--RLLMQYDTIIIDEAHERSLNIDFIL--GYLKELLPR-RP 217 (1294)
T ss_pred eeceeecCcc------ccCCCCCEEEEChHHHHHHHhcC--CccccCcEEEecCccccccccchHH--HHHHHhhhc-CC
Confidence 1222222211 11356899999999999998753 348999999999999 688888753 223333433 35
Q ss_pred cceEEEEccccCHHHHHHHhhhcCCCEEEEccCCCCcccCccceecCCCceEEEEEcCc------hhhHHHHHHHHHhhc
Q psy15524 576 QFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPP------KLRLVALASFILGKC 649 (930)
Q Consensus 576 ~~q~vl~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~l~~~l~~~~ 649 (930)
+.|+++||||++. ..+.+.+...|+ +.+.+.. ..+...|..... ...+..+...+...+
T Consensus 218 dlKvILmSATid~--e~fs~~F~~apv-I~V~Gr~------------~pVei~y~p~~~~~~~~~~d~l~~ll~~V~~l~ 282 (1294)
T PRK11131 218 DLKVIITSATIDP--ERFSRHFNNAPI-IEVSGRT------------YPVEVRYRPIVEEADDTERDQLQAIFDAVDELG 282 (1294)
T ss_pred CceEEEeeCCCCH--HHHHHHcCCCCE-EEEcCcc------------ccceEEEeecccccchhhHHHHHHHHHHHHHHh
Confidence 7899999999975 456655555553 4443221 012334433322 122333333333222
Q ss_pred cCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHHHHHHHHHHhhcCCCcEEEeccccccccCCCCc
Q psy15524 650 QNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLV 729 (930)
Q Consensus 650 ~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~v~~~F~~~~~~vLv~T~~~~~GlDip~v 729 (930)
. ...+.+|||+++.++++.+++.|.........+..+||+|++.+|..+++. .|..+||||||++++|||+|+|
T Consensus 283 ~----~~~GdILVFLpg~~EIe~lae~L~~~~~~~~~VlpLhg~Ls~~eQ~~Vf~~--~g~rkIIVATNIAEtSITIpgI 356 (1294)
T PRK11131 283 R----EGPGDILIFMSGEREIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQS--HSGRRIVLATNVAETSLTVPGI 356 (1294)
T ss_pred c----CCCCCEEEEcCCHHHHHHHHHHHHhcCCCcceEeecccCCCHHHHHHHhcc--cCCeeEEEeccHHhhccccCcc
Confidence 1 236789999999999999999998753334567889999999999999986 4778999999999999999999
Q ss_pred cEEEEec---------------CC---CChhhHHhhhcccccCCCCceEEEEeCcccH
Q psy15524 730 DWIVQYT---------------AP---SSSTDYVHRVGRTARVGHEGSSLLFLIPSEV 769 (930)
Q Consensus 730 ~~VI~~~---------------~p---~s~~~y~qr~GRagR~g~~g~~~~~~~~~e~ 769 (930)
++||+++ .| .|..+|.||+|||||. .+|.|+.++++.+.
T Consensus 357 ~yVID~Gl~k~~~Yd~~~~~~~Lp~~~iSkasa~QRaGRAGR~-~~G~c~rLyte~d~ 413 (1294)
T PRK11131 357 KYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRV-SEGICIRLYSEDDF 413 (1294)
T ss_pred eEEEECCCccccccccccCcccCCeeecCHhhHhhhccccCCC-CCcEEEEeCCHHHH
Confidence 9999986 23 4568999999999999 69999999997654
|
|
| >PRK12904 preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.3e-29 Score=290.71 Aligned_cols=342 Identities=18% Similarity=0.196 Sum_probs=231.7
Q ss_pred HHHHHhcCCCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHH
Q psy15524 403 KKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQT 482 (930)
Q Consensus 403 ~~~l~~~~~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~ 482 (930)
.++..+.+|. .|+++|--.--.+..| -|++++||+|||+++.+|++-.... |..+-|++||.+||.|.
T Consensus 71 rEa~~R~lg~-~~~dvQlig~l~L~~G--~Iaem~TGeGKTLva~lpa~l~aL~---------G~~V~IvTpn~yLA~rd 138 (830)
T PRK12904 71 REASKRVLGM-RHFDVQLIGGMVLHEG--KIAEMKTGEGKTLVATLPAYLNALT---------GKGVHVVTVNDYLAKRD 138 (830)
T ss_pred HHHHHHHhCC-CCCccHHHhhHHhcCC--chhhhhcCCCcHHHHHHHHHHHHHc---------CCCEEEEecCHHHHHHH
Confidence 3444444454 4555665554444444 5999999999999999999744332 44577999999999999
Q ss_pred HHHHHHhhccCCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhH-HHhhhccCC-----cccccceEEEEecchhhh-
Q psy15524 483 LEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRL-LDHCKHTET-----LKFSKVEHLVLDEADRIL- 555 (930)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl-~~~l~~~~~-----~~~~~l~~lVlDEah~l~- 555 (930)
++.+..++..++ +.+++++|+.+....... ..++|+|+||++| .|+++.... ..++.+.++|+||||.++
T Consensus 139 ~e~~~~l~~~LG-lsv~~i~~~~~~~er~~~--y~~dI~ygT~~elgfDyLrd~~~~~~~~~~~r~~~~aIvDEaDsiLI 215 (830)
T PRK12904 139 AEWMGPLYEFLG-LSVGVILSGMSPEERREA--YAADITYGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIVDEVDSILI 215 (830)
T ss_pred HHHHHHHHhhcC-CeEEEEcCCCCHHHHHHh--cCCCeEEECCcchhhhhhhcccccchhhhcccccceEEEechhhhee
Confidence 999999998765 566788888776544433 4699999999999 899876432 246789999999999986
Q ss_pred h---------------cCcHHHHHHHHHHHhhc-----CccceEEEEccccCHHHH-----------------HHHh---
Q psy15524 556 D---------------QGYERDIAEFLEILKKQ-----KPQFQSILLSATLTPAVQ-----------------RLAG--- 595 (930)
Q Consensus 556 ~---------------~g~~~~l~~i~~~l~~~-----~~~~q~vl~SAT~~~~~~-----------------~l~~--- 595 (930)
| ..+...+..++..+... ....+.+.+|..-...++ .+..
T Consensus 216 DeArtpLiiSg~~~~~~~~y~~~~~~v~~l~~~~dy~vde~~~~v~lte~G~~~~e~~~~~~~ly~~~~~~~~~~i~~AL 295 (830)
T PRK12904 216 DEARTPLIISGPAEDSSELYKRANKIVPTLEKEGDYTVDEKSRTVGLTEEGIEKAEKLLGIENLYDPENIALVHHLNQAL 295 (830)
T ss_pred ccCCCceeeECCCCcccHHHHHHHHHHHhcCCCCCeEEEcCCCeeeECHHHHHHHHHHhCCccccChhhhHHHHHHHHHH
Confidence 1 11233444455554321 112233444332100000 0000
Q ss_pred ---hh-cCCCEEEE-------ccCC---------------------------------------------------CCc-
Q psy15524 596 ---MT-LQNPIQID-------AADS---------------------------------------------------TDI- 612 (930)
Q Consensus 596 ---~~-~~~~~~i~-------~~~~---------------------------------------------------~~~- 612 (930)
.. .+|-.++- +... .-.
T Consensus 296 ~A~~l~~~d~dYiV~dg~V~ivDe~TGR~~~gr~ws~GLHQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa 375 (830)
T PRK12904 296 RAHELFKRDVDYIVKDGEVVIVDEFTGRLMPGRRYSDGLHQAIEAKEGVKIQNENQTLASITFQNYFRMYEKLAGMTGTA 375 (830)
T ss_pred HHHHHHhcCCcEEEECCEEEEEECCCCccCCCCccchHHHHHHHHhcCCCCCCCceeeeeeeHHHHHHhcchhcccCCCc
Confidence 00 11111110 0000 000
Q ss_pred ---------ccCccceecCCCceEE------EEEcCchhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHH
Q psy15524 613 ---------HNTTDSLVIPDSLKQH------FIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELL 677 (930)
Q Consensus 613 ---------~~~~~~~~~~~~~~~~------~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l 677 (930)
-...+...+|...+.. .+......|..++...+..... .+.|+||||+|.+.++.+++.|
T Consensus 376 ~te~~E~~~iY~l~vv~IPtnkp~~r~d~~d~i~~t~~~K~~aI~~~I~~~~~-----~grpVLIft~Si~~se~Ls~~L 450 (830)
T PRK12904 376 DTEAEEFREIYNLDVVVIPTNRPMIRIDHPDLIYKTEKEKFDAVVEDIKERHK-----KGQPVLVGTVSIEKSELLSKLL 450 (830)
T ss_pred HHHHHHHHHHhCCCEEEcCCCCCeeeeeCCCeEEECHHHHHHHHHHHHHHHHh-----cCCCEEEEeCcHHHHHHHHHHH
Confidence 0001122333322211 2344556688888887765322 2789999999999999999999
Q ss_pred hhhcCCCceEEEecCCCCHHHHHHHHHHhhcCCCcEEEeccccccccCCCCc----------------------------
Q psy15524 678 STVLGENIAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLV---------------------------- 729 (930)
Q Consensus 678 ~~~~~~~~~~~~lhg~~~~~~R~~v~~~F~~~~~~vLv~T~~~~~GlDip~v---------------------------- 729 (930)
.+. ++++..+||. +.+|+..+.+|+.+...|+||||+|+||+||+==
T Consensus 451 ~~~---gi~~~vLnak--q~eREa~Iia~Ag~~g~VtIATNmAGRGtDI~LgGn~~~~~~~~~~~~~~~~~~~~~~~~~~ 525 (830)
T PRK12904 451 KKA---GIPHNVLNAK--NHEREAEIIAQAGRPGAVTIATNMAGRGTDIKLGGNPEMLAAALLEEETEEQIAKIKAEWQE 525 (830)
T ss_pred HHC---CCceEeccCc--hHHHHHHHHHhcCCCceEEEecccccCCcCccCCCchhhhhhhhhhhhhhHHHHHHHHHHhh
Confidence 875 8899999995 7899999999999999999999999999999632
Q ss_pred ----------cEEEEecCCCChhhHHhhhcccccCCCCceEEEEeCcccH
Q psy15524 730 ----------DWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPSEV 769 (930)
Q Consensus 730 ----------~~VI~~~~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~e~ 769 (930)
-+||....|.|..--.|-.||+||.|.+|.+.+|++-++.
T Consensus 526 ~~~~v~~~GGLhVigTerhesrRid~QlrGRagRQGdpGss~f~lSleD~ 575 (830)
T PRK12904 526 EHEEVLEAGGLHVIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLEDD 575 (830)
T ss_pred hhhhHHHcCCCEEEecccCchHHHHHHhhcccccCCCCCceeEEEEcCcH
Confidence 2799999999999999999999999999999999996543
|
|
| >PRK12906 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=1e-29 Score=292.53 Aligned_cols=343 Identities=18% Similarity=0.208 Sum_probs=232.6
Q ss_pred HHHHHHhcCCCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHH
Q psy15524 402 MKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQ 481 (930)
Q Consensus 402 ~~~~l~~~~~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q 481 (930)
+.++..+.+|+ .|+++|.-+--.+..|+ |+++.||+|||+++.+|++..... |..+-|++||..||.|
T Consensus 69 vrEa~~R~~g~-~~~dvQlig~l~l~~G~--iaEm~TGEGKTLvA~l~a~l~al~---------G~~v~vvT~neyLA~R 136 (796)
T PRK12906 69 AREGAKRVLGL-RPFDVQIIGGIVLHEGN--IAEMKTGEGKTLTATLPVYLNALT---------GKGVHVVTVNEYLSSR 136 (796)
T ss_pred HHHHHHHHhCC-CCchhHHHHHHHHhcCC--cccccCCCCCcHHHHHHHHHHHHc---------CCCeEEEeccHHHHHh
Confidence 44455555564 56666665554554554 999999999999999999987765 7889999999999999
Q ss_pred HHHHHHHhhccCCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhH-HHhhhcc-----CCcccccceEEEEecchhhh
Q psy15524 482 TLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRL-LDHCKHT-----ETLKFSKVEHLVLDEADRIL 555 (930)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl-~~~l~~~-----~~~~~~~l~~lVlDEah~l~ 555 (930)
-++.+.+++..++ +.+++++|+..... ++....++|+++|...+ .|.|+.. .....+.+.+.|+||+|.++
T Consensus 137 d~e~~~~~~~~LG-l~vg~i~~~~~~~~--r~~~y~~dI~Y~t~~e~gfDyLRD~m~~~~~~~v~r~~~~aIvDEvDSiL 213 (796)
T PRK12906 137 DATEMGELYRWLG-LTVGLNLNSMSPDE--KRAAYNCDITYSTNSELGFDYLRDNMVVYKEQMVQRPLNYAIVDEVDSIL 213 (796)
T ss_pred hHHHHHHHHHhcC-CeEEEeCCCCCHHH--HHHHhcCCCeecCCccccccchhhccccchhhhhccCcceeeeccchhee
Confidence 9999999998877 45667777654433 33445799999999876 3444432 12235678999999999875
Q ss_pred -hc---------------CcHHHHHHHHHHHhhcC----------------ccceEEEEccc----------cC-----H
Q psy15524 556 -DQ---------------GYERDIAEFLEILKKQK----------------PQFQSILLSAT----------LT-----P 588 (930)
Q Consensus 556 -~~---------------g~~~~l~~i~~~l~~~~----------------~~~q~vl~SAT----------~~-----~ 588 (930)
|. .+...+..++..+.... ...+.+.++.. ++ .
T Consensus 214 iDeartPLiisg~~~~~~~~y~~~~~~v~~l~~~~~~~~~~~~~~~dy~id~~~k~v~lte~G~~~~e~~~~i~~l~~~~ 293 (796)
T PRK12906 214 IDEARTPLIISGQAEKATDLYIRADRFVKTLIKDEAEDGDDDEDTGDYKIDEKTKTISLTEQGIRKAEKLFGLDNLYDSE 293 (796)
T ss_pred eccCCCceecCCCCCcchHHHHHHHHHHHHHHhhhhccccccCCCCceEEEcccCceeecHHHHHHHHHHcCCccccCch
Confidence 10 12233444444443210 01222333321 00 0
Q ss_pred H--HHHHHhh-------hcCCCEEEE-------ccCC-------------------------------------------
Q psy15524 589 A--VQRLAGM-------TLQNPIQID-------AADS------------------------------------------- 609 (930)
Q Consensus 589 ~--~~~l~~~-------~~~~~~~i~-------~~~~------------------------------------------- 609 (930)
. ...+... +.++-.++- +...
T Consensus 294 ~~~~~~~i~~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~ws~GLHQaieaKe~v~i~~e~~t~a~It~qnfFr 373 (796)
T PRK12906 294 NTALAHHIDQALRANYIMLKDIDYVVQDGEVLIVDEFTGRVMEGRRYSDGLHQAIEAKEGVKIQEENQTLATITYQNFFR 373 (796)
T ss_pred hhhHHHHHHHHHHHHHHHhcCCcEEEECCEEEEEeCCCCCcCCCCccChHHHHHHHHhcCCCcCCCceeeeeehHHHHHH
Confidence 0 0011100 011111110 0000
Q ss_pred --------CC-c---------ccCccceecCCCceEEE------EEcCchhhHHHHHHHHHhhccCCCcCCCceEEEEec
Q psy15524 610 --------TD-I---------HNTTDSLVIPDSLKQHF------IVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMA 665 (930)
Q Consensus 610 --------~~-~---------~~~~~~~~~~~~~~~~~------~~~~~~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~ 665 (930)
.- . ........+|...+... +......|..++...+..... .+.++||||+
T Consensus 374 ~Y~kl~GmTGTa~~e~~Ef~~iY~l~vv~IPtnkp~~r~d~~d~i~~t~~~K~~al~~~i~~~~~-----~g~pvLI~t~ 448 (796)
T PRK12906 374 MYKKLSGMTGTAKTEEEEFREIYNMEVITIPTNRPVIRKDSPDLLYPTLDSKFNAVVKEIKERHA-----KGQPVLVGTV 448 (796)
T ss_pred hcchhhccCCCCHHHHHHHHHHhCCCEEEcCCCCCeeeeeCCCeEEcCHHHHHHHHHHHHHHHHh-----CCCCEEEEeC
Confidence 00 0 00011223443332222 334456677788877765322 2789999999
Q ss_pred chhhHHHHHHHHhhhcCCCceEEEecCCCCHHHHHHHHHHhhcCCCcEEEeccccccccCC---CCcc-----EEEEecC
Q psy15524 666 TQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDL---PLVD-----WIVQYTA 737 (930)
Q Consensus 666 s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~v~~~F~~~~~~vLv~T~~~~~GlDi---p~v~-----~VI~~~~ 737 (930)
|++.++.++..|.+. ++++..+||++.+.++..+.++++.|. |+|||++|+||+|| ++|. +||+++.
T Consensus 449 si~~se~ls~~L~~~---gi~~~~Lna~~~~~Ea~ii~~ag~~g~--VtIATnmAGRGtDI~l~~~V~~~GGLhVI~te~ 523 (796)
T PRK12906 449 AIESSERLSHLLDEA---GIPHAVLNAKNHAKEAEIIMNAGQRGA--VTIATNMAGRGTDIKLGPGVKELGGLAVIGTER 523 (796)
T ss_pred cHHHHHHHHHHHHHC---CCCeeEecCCcHHHHHHHHHhcCCCce--EEEEeccccCCCCCCCCcchhhhCCcEEEeeec
Confidence 999999999999885 888999999999999999999998888 99999999999999 4899 9999999
Q ss_pred CCChhhHHhhhcccccCCCCceEEEEeCcccH
Q psy15524 738 PSSSTDYVHRVGRTARVGHEGSSLLFLIPSEV 769 (930)
Q Consensus 738 p~s~~~y~qr~GRagR~g~~g~~~~~~~~~e~ 769 (930)
|.|.+.|.|++|||||.|.+|.+.+|++.++.
T Consensus 524 pes~ri~~Ql~GRtGRqG~~G~s~~~~sleD~ 555 (796)
T PRK12906 524 HESRRIDNQLRGRSGRQGDPGSSRFYLSLEDD 555 (796)
T ss_pred CCcHHHHHHHhhhhccCCCCcceEEEEeccch
Confidence 99999999999999999999999999997654
|
|
| >PRK01297 ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.2e-30 Score=296.70 Aligned_cols=252 Identities=29% Similarity=0.408 Sum_probs=194.7
Q ss_pred CCCccCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcC-CCCCCeEEEEEcccHHHHHHHHHHHHH
Q psy15524 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKI-SRKDGIYAVIILPTRELALQTLEIFTK 79 (930)
Q Consensus 1 ~g~~~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~-~~~~~~~~lvl~P~~~L~~q~~~~~~~ 79 (930)
+||..||++|.++|+.+++|+|+++++|||||||++|++|+++.+....... ...++.++|||+||+||+.|+.+.++.
T Consensus 105 ~g~~~~~~iQ~~ai~~~~~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~~~~aLil~PtreLa~Q~~~~~~~ 184 (475)
T PRK01297 105 LGFPYCTPIQAQVLGYTLAGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEPRALIIAPTRELVVQIAKDAAA 184 (475)
T ss_pred CCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhcCcccccccCCceEEEEeCcHHHHHHHHHHHHH
Confidence 5999999999999999999999999999999999999999999987643221 112357899999999999999999999
Q ss_pred HhhhcCCceeEEeeCCCchHHHHHHhc-CCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCcHHHHHHHH
Q psy15524 80 LCKSFTWIVPSWLTGGEKMKSEKARIR-KGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFL 158 (930)
Q Consensus 80 ~~~~~~~~~~~~~~g~~~~~~~~~~l~-~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~~~~~~~i~ 158 (930)
+....+ +.+..++||.....+...+. ..++|+|+||++|+.+... +...++++++|||||+|++++++|.+.+..++
T Consensus 185 l~~~~~-~~v~~~~gg~~~~~~~~~~~~~~~~Iiv~TP~~Ll~~~~~-~~~~l~~l~~lViDEah~l~~~~~~~~l~~i~ 262 (475)
T PRK01297 185 LTKYTG-LNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQR-GEVHLDMVEVMVLDEADRMLDMGFIPQVRQII 262 (475)
T ss_pred hhccCC-CEEEEEEccCChHHHHHHHhCCCCCEEEECHHHHHHHHHc-CCcccccCceEEechHHHHHhcccHHHHHHHH
Confidence 987655 66777888877666665554 4689999999999988765 56678999999999999999999988888877
Q ss_pred HHHhhcCCCceEEEEEeecCCCccccccccccccccccchhhhhhhhhhhccchhhHHHHHHHHhhcCcCceEEEEeccc
Q psy15524 159 EILKKQKPQFQSILLSATLTPATCWCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATL 238 (930)
Q Consensus 159 ~~l~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~de~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~sat~ 238 (930)
..++... +. |++++|||+
T Consensus 263 ~~~~~~~-~~-------------------------------------------------------------q~i~~SAT~ 280 (475)
T PRK01297 263 RQTPRKE-ER-------------------------------------------------------------QTLLFSATF 280 (475)
T ss_pred HhCCCCC-Cc-------------------------------------------------------------eEEEEEeec
Confidence 6553221 12 555555555
Q ss_pred chHHHHhhhccccCCeeeccCCcccccCCCcccccCCCceeEEEEcCcchhHHHHHHHHhhhccccccCCcceEEEEEec
Q psy15524 239 TPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMAT 318 (930)
Q Consensus 239 ~~~~~~l~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~iVF~~s 318 (930)
+..+..++..++.++..+.+.... ....++.+++..+...+|...+..++ ......++||||++
T Consensus 281 ~~~~~~~~~~~~~~~~~v~~~~~~---------~~~~~~~~~~~~~~~~~k~~~l~~ll-------~~~~~~~~IVF~~s 344 (475)
T PRK01297 281 TDDVMNLAKQWTTDPAIVEIEPEN---------VASDTVEQHVYAVAGSDKYKLLYNLV-------TQNPWERVMVFANR 344 (475)
T ss_pred CHHHHHHHHHhccCCEEEEeccCc---------CCCCcccEEEEEecchhHHHHHHHHH-------HhcCCCeEEEEeCC
Confidence 555556666666666665443322 11244667777777777888888777 33455799999999
Q ss_pred ccchhhhHHHHhhh
Q psy15524 319 QDMADYHTELLSTK 332 (930)
Q Consensus 319 ~~~~~~l~~~L~~~ 332 (930)
++.++.++..|...
T Consensus 345 ~~~~~~l~~~L~~~ 358 (475)
T PRK01297 345 KDEVRRIEERLVKD 358 (475)
T ss_pred HHHHHHHHHHHHHc
Confidence 99999999999654
|
|
| >PRK05580 primosome assembly protein PriA; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.6e-30 Score=300.62 Aligned_cols=327 Identities=17% Similarity=0.221 Sum_probs=219.3
Q ss_pred CCCHHHHHhHHhhhcC---CcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHHHHhh
Q psy15524 414 QVTTVQQLSIQPILDG---GDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLC 490 (930)
Q Consensus 414 ~~~~iQ~~~i~~il~~---~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~ 490 (930)
.+|+.|+++++.+..+ +++++.|+||||||.+|+.++.+.+.. |.++||++||++|+.|+++.+++.+
T Consensus 144 ~Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l~~i~~~l~~---------g~~vLvLvPt~~L~~Q~~~~l~~~f 214 (679)
T PRK05580 144 TLNPEQAAAVEAIRAAAGFSPFLLDGVTGSGKTEVYLQAIAEVLAQ---------GKQALVLVPEIALTPQMLARFRARF 214 (679)
T ss_pred CCCHHHHHHHHHHHhccCCCcEEEECCCCChHHHHHHHHHHHHHHc---------CCeEEEEeCcHHHHHHHHHHHHHHh
Confidence 6899999999999874 789999999999999999888777643 6789999999999999999998865
Q ss_pred ccCCCcceEEEeCCCchHHH---HHHHh-cCCcEEEECchhHHHhhhccCCcccccceEEEEecchhhhhcCcHH---HH
Q psy15524 491 KSFTWIVPSWLTGGEKMKSE---KARIR-KGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYER---DI 563 (930)
Q Consensus 491 ~~~~~~~~~~~~gg~~~~~~---~~~~~-~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~l~~~g~~~---~l 563 (930)
+ ..+..++|+.+.... +..+. ...+|+|+||+.+. ..+++++++|+||+|.....+... ..
T Consensus 215 g----~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~--------~p~~~l~liVvDEeh~~s~~~~~~p~y~~ 282 (679)
T PRK05580 215 G----APVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALF--------LPFKNLGLIIVDEEHDSSYKQQEGPRYHA 282 (679)
T ss_pred C----CCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc--------ccccCCCEEEEECCCccccccCcCCCCcH
Confidence 3 245567777654332 22333 35799999998763 346789999999999765432110 11
Q ss_pred HHHHHHHhhcCccceEEEEccccCHHHHHHHhhhcCCCEEEEccCCCCcccCccceecCCCceEEEEEcCch-------h
Q psy15524 564 AEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPK-------L 636 (930)
Q Consensus 564 ~~i~~~l~~~~~~~q~vl~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~ 636 (930)
..+. .+.....+.+++++|||++......+... ....+........ ...| ....+..... .
T Consensus 283 r~va-~~ra~~~~~~~il~SATps~~s~~~~~~g--~~~~~~l~~r~~~------~~~p---~v~~id~~~~~~~~~~~~ 350 (679)
T PRK05580 283 RDLA-VVRAKLENIPVVLGSATPSLESLANAQQG--RYRLLRLTKRAGG------ARLP---EVEIIDMRELLRGENGSF 350 (679)
T ss_pred HHHH-HHHhhccCCCEEEEcCCCCHHHHHHHhcc--ceeEEEecccccc------CCCC---eEEEEechhhhhhcccCC
Confidence 1211 11222347899999999886554443321 1112221111000 0000 0000000000 0
Q ss_pred hHHHHHHHHHhhccCCCcCCCceEEEEecch-------------------------------------------------
Q psy15524 637 RLVALASFILGKCQNVNEDEESKMLVFMATQ------------------------------------------------- 667 (930)
Q Consensus 637 ~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~------------------------------------------------- 667 (930)
-...+...+.+.... +.++|||++.+
T Consensus 351 ls~~l~~~i~~~l~~-----g~qvll~~nrrGy~~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp 425 (679)
T PRK05580 351 LSPPLLEAIKQRLER-----GEQVLLFLNRRGYAPFLLCRDCGWVAECPHCDASLTLHRFQRRLRCHHCGYQEPIPKACP 425 (679)
T ss_pred CCHHHHHHHHHHHHc-----CCeEEEEEcCCCCCCceEhhhCcCccCCCCCCCceeEECCCCeEECCCCcCCCCCCCCCC
Confidence 012233333333221 45677776541
Q ss_pred -----------hhHHHHHHHHhhhcCCCceEEEecCCCCH--HHHHHHHHHhhcCCCcEEEeccccccccCCCCccEEEE
Q psy15524 668 -----------DMADYHTELLSTVLGENIAFFKLHGSMSQ--SERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQ 734 (930)
Q Consensus 668 -----------~~~~~~~~~l~~~~~~~~~~~~lhg~~~~--~~R~~v~~~F~~~~~~vLv~T~~~~~GlDip~v~~VI~ 734 (930)
..++.+++.|.+.++ +..+..+|+++.+ .+++.++++|++|+.+|||+|+++++|+|+|+|++|+.
T Consensus 426 ~Cg~~~l~~~g~G~e~~~e~l~~~fp-~~~v~~~~~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~iakG~d~p~v~lV~i 504 (679)
T PRK05580 426 ECGSTDLVPVGPGTERLEEELAELFP-EARILRIDRDTTRRKGALEQLLAQFARGEADILIGTQMLAKGHDFPNVTLVGV 504 (679)
T ss_pred CCcCCeeEEeeccHHHHHHHHHHhCC-CCcEEEEeccccccchhHHHHHHHHhcCCCCEEEEChhhccCCCCCCcCEEEE
Confidence 123456666766654 6788899999974 57999999999999999999999999999999999965
Q ss_pred ecC--CCC----------hhhHHhhhcccccCCCCceEEEEeCcccHHHHHHHHhcC
Q psy15524 735 YTA--PSS----------STDYVHRVGRTARVGHEGSSLLFLIPSEVKLVEELQNRR 779 (930)
Q Consensus 735 ~~~--p~s----------~~~y~qr~GRagR~g~~g~~~~~~~~~e~~~~~~l~~~~ 779 (930)
.|. +.+ ...|+|++||+||.+..|.+++.....+...++.+.+.+
T Consensus 505 l~aD~~l~~pdfra~Er~~~~l~q~~GRagR~~~~g~viiqT~~p~~~~~~~~~~~d 561 (679)
T PRK05580 505 LDADLGLFSPDFRASERTFQLLTQVAGRAGRAEKPGEVLIQTYHPEHPVIQALLAQD 561 (679)
T ss_pred EcCchhccCCccchHHHHHHHHHHHHhhccCCCCCCEEEEEeCCCCCHHHHHHHhCC
Confidence 554 332 257999999999999999999988877766677666543
|
|
| >TIGR00603 rad25 DNA repair helicase rad25 | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.4e-30 Score=295.19 Aligned_cols=315 Identities=17% Similarity=0.174 Sum_probs=207.3
Q ss_pred CCCCHHHHHhHHhhhc-C--CcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHHHHh
Q psy15524 413 TQVTTVQQLSIQPILD-G--GDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKL 489 (930)
Q Consensus 413 ~~~~~iQ~~~i~~il~-~--~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~ 489 (930)
..++|+|.+++..+.. | +..++++|||+|||++.+..+. .+ +.++|||||+.+|+.||.+.+.++
T Consensus 254 ~~LRpYQ~eAl~~~~~~gr~r~GIIvLPtGaGKTlvai~aa~-~l-----------~k~tLILvps~~Lv~QW~~ef~~~ 321 (732)
T TIGR00603 254 TQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVTAAC-TV-----------KKSCLVLCTSAVSVEQWKQQFKMW 321 (732)
T ss_pred CCcCHHHHHHHHHHHhcCCCCCcEEEeCCCCChHHHHHHHHH-Hh-----------CCCEEEEeCcHHHHHHHHHHHHHh
Confidence 4689999999999884 3 3689999999999999765543 22 245999999999999999999987
Q ss_pred hccCCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhcc-------CCcccccceEEEEecchhhhhcCcHHH
Q psy15524 490 CKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHT-------ETLKFSKVEHLVLDEADRILDQGYERD 562 (930)
Q Consensus 490 ~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~-------~~~~~~~l~~lVlDEah~l~~~g~~~~ 562 (930)
+.. .......++|+.... ......|+|+|+..+.....+. ..+.-..++++|+||||++....|
T Consensus 322 ~~l-~~~~I~~~tg~~k~~-----~~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~lpA~~f--- 392 (732)
T TIGR00603 322 STI-DDSQICRFTSDAKER-----FHGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHVVPAAMF--- 392 (732)
T ss_pred cCC-CCceEEEEecCcccc-----cccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEccccccHHHH---
Confidence 632 223344555653221 1234789999998664322211 112234688999999999865433
Q ss_pred HHHHHHHHhhcCccceEEEEccccCHHHHH--HHhhhcCCCEEEEccCCCCcccCccceecCCCceE-------------
Q psy15524 563 IAEFLEILKKQKPQFQSILLSATLTPAVQR--LAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQ------------- 627 (930)
Q Consensus 563 l~~i~~~l~~~~~~~q~vl~SAT~~~~~~~--l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~------------- 627 (930)
..++..+. ....+++|||+...-.. .....+ .|......-.... ...+..+-....
T Consensus 393 -r~il~~l~----a~~RLGLTATP~ReD~~~~~L~~Li-GP~vye~~~~eLi---~~G~LA~~~~~ev~v~~t~~~~~~y 463 (732)
T TIGR00603 393 -RRVLTIVQ----AHCKLGLTATLVREDDKITDLNFLI-GPKLYEANWMELQ---KKGFIANVQCAEVWCPMTPEFYREY 463 (732)
T ss_pred -HHHHHhcC----cCcEEEEeecCcccCCchhhhhhhc-CCeeeecCHHHHH---hCCccccceEEEEEecCCHHHHHHH
Confidence 34444443 23469999998632111 111111 2322221110000 000000000000
Q ss_pred --------EEEEcCchhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHHHH
Q psy15524 628 --------HFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSER 699 (930)
Q Consensus 628 --------~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R 699 (930)
.........|+..+..++..+. ..+.++||||.+.+.++.+++.|. .. .+||++++.+|
T Consensus 464 l~~~~~~k~~l~~~np~K~~~~~~Li~~he-----~~g~kiLVF~~~~~~l~~~a~~L~------~~--~I~G~ts~~ER 530 (732)
T TIGR00603 464 LRENSRKRMLLYVMNPNKFRACQFLIRFHE-----QRGDKIIVFSDNVFALKEYAIKLG------KP--FIYGPTSQQER 530 (732)
T ss_pred HHhcchhhhHHhhhChHHHHHHHHHHHHHh-----hcCCeEEEEeCCHHHHHHHHHHcC------Cc--eEECCCCHHHH
Confidence 0001122234444444444321 137899999999998888877663 23 46999999999
Q ss_pred HHHHHHhhcC-CCcEEEeccccccccCCCCccEEEEecCC-CChhhHHhhhcccccCCCCceE-------EEEeCcccHH
Q psy15524 700 TEVFKTFRSV-KSGVLICTDVAARGLDLPLVDWIVQYTAP-SSSTDYVHRVGRTARVGHEGSS-------LLFLIPSEVK 770 (930)
Q Consensus 700 ~~v~~~F~~~-~~~vLv~T~~~~~GlDip~v~~VI~~~~p-~s~~~y~qr~GRagR~g~~g~~-------~~~~~~~e~~ 770 (930)
..++++|++| ..++||+|+++++|+|+|++++||+++.| .|..+|+||+||++|.+..|.+ +.|++++..+
T Consensus 531 ~~il~~Fr~~~~i~vLv~SkVgdeGIDlP~a~vvI~~s~~~gS~~q~iQRlGRilR~~~~~~~~~~~A~fY~lVs~dT~E 610 (732)
T TIGR00603 531 MQILQNFQHNPKVNTIFLSKVGDTSIDLPEANVLIQISSHYGSRRQEAQRLGRILRAKKGSDAEEYNAFFYSLVSKDTQE 610 (732)
T ss_pred HHHHHHHHhCCCccEEEEecccccccCCCCCCEEEEeCCCCCCHHHHHHHhcccccCCCCCccccccceEEEEecCCchH
Confidence 9999999975 78999999999999999999999999987 5999999999999999887775 6777776543
|
All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PRK13107 preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.2e-29 Score=286.48 Aligned_cols=333 Identities=18% Similarity=0.180 Sum_probs=229.1
Q ss_pred CCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHHHHhhccCC
Q psy15524 415 VTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFT 494 (930)
Q Consensus 415 ~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~ 494 (930)
|+|+-.|.|..+.-.+.-|++++||+|||++|.+|++..... |..|.||+|+++||.|.++.+..++..++
T Consensus 81 m~~ydVQliGgl~L~~G~IaEm~TGEGKTL~a~lp~~l~al~---------g~~VhIvT~ndyLA~RD~e~m~~l~~~lG 151 (908)
T PRK13107 81 MRHFDVQLLGGMVLDSNRIAEMRTGEGKTLTATLPAYLNALT---------GKGVHVITVNDYLARRDAENNRPLFEFLG 151 (908)
T ss_pred CCcCchHHhcchHhcCCccccccCCCCchHHHHHHHHHHHhc---------CCCEEEEeCCHHHHHHHHHHHHHHHHhcC
Confidence 445555556666556667999999999999999999977754 56699999999999999999999998766
Q ss_pred CcceEEEeCCCchHHHHHHHhcCCcEEEECchhH-HHhhhccCCcc-----cccceEEEEecchhhhhc-----------
Q psy15524 495 WIVPSWLTGGEKMKSEKARIRKGISILVATPGRL-LDHCKHTETLK-----FSKVEHLVLDEADRILDQ----------- 557 (930)
Q Consensus 495 ~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl-~~~l~~~~~~~-----~~~l~~lVlDEah~l~~~----------- 557 (930)
+.++++.++.+. ..++-..+++|+++||+++ .++++..-.+. .+.+.++|+||||.++-.
T Consensus 152 -lsv~~i~~~~~~--~~r~~~Y~~dI~YgT~~e~gfDyLrdnm~~~~~~~vqr~~~~aIvDEvDsiLiDEArtPLIISg~ 228 (908)
T PRK13107 152 -LTVGINVAGLGQ--QEKKAAYNADITYGTNNEFGFDYLRDNMAFSPQERVQRPLHYALIDEVDSILIDEARTPLIISGA 228 (908)
T ss_pred -CeEEEecCCCCH--HHHHhcCCCCeEEeCCCcccchhhhccCccchhhhhccccceeeecchhhhccccCCCceeecCC
Confidence 456677787664 3334445899999999999 88887642333 378999999999998621
Q ss_pred -----CcHHHHHHHHHHHhhc----------------CccceEEEEccccCHHHHHHH----------------------
Q psy15524 558 -----GYERDIAEFLEILKKQ----------------KPQFQSILLSATLTPAVQRLA---------------------- 594 (930)
Q Consensus 558 -----g~~~~l~~i~~~l~~~----------------~~~~q~vl~SAT~~~~~~~l~---------------------- 594 (930)
.+...+..++..|... ....+.+.+|-.=...+..+.
T Consensus 229 ~~~~~~~y~~~~~~v~~L~~~~~~~~~~~~~~~dy~idek~~~v~LTe~G~~~~e~~l~~~~~~~~~~~l~~~~~~~~~~ 308 (908)
T PRK13107 229 AEDSSELYIKINTLIPNLIRQDKEDTEEYVGEGDYSIDEKAKQVHFTERGQEKVENLLIERGMLAEGDSLYSAANISLLH 308 (908)
T ss_pred CccchHHHHHHHHHHHHHHhhhhccccccCCCCCEEEecCCCeeeechHHHHHHHHHHHhCCcccCcccccCchhhHHHH
Confidence 1223333334444321 012223333321001111110
Q ss_pred ------h---hhcCCCEEEE-------ccCC-----------------------------CC------------------
Q psy15524 595 ------G---MTLQNPIQID-------AADS-----------------------------TD------------------ 611 (930)
Q Consensus 595 ------~---~~~~~~~~i~-------~~~~-----------------------------~~------------------ 611 (930)
+ .+.++-.++- ++.. ..
T Consensus 309 ~i~~aL~A~~lf~~d~dYiV~dg~V~IVDe~TGRim~grrwsdGLHQaIEaKE~v~I~~e~~t~AsIT~QnfFr~Y~kL~ 388 (908)
T PRK13107 309 HVNAALRAHTLFEKDVDYIVQDNEVIIVDEHTGRTMPGRRWSEGLHQAVEAKEGVHIQNENQTLASITFQNYFRQYEKLA 388 (908)
T ss_pred HHHHHHHHHHHHhcCCceEEECCEEEEEECCCCCCCCCCccchHHHHHHHHhcCCCCCCCceeeeeehHHHHHHhhhHhh
Confidence 0 0011111110 0000 00
Q ss_pred ----c----------ccCccceecCCCceEE------EEEcCchhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHH
Q psy15524 612 ----I----------HNTTDSLVIPDSLKQH------FIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMAD 671 (930)
Q Consensus 612 ----~----------~~~~~~~~~~~~~~~~------~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~ 671 (930)
. -...+...+|...... .+......|..++...+..... .+.++||||.|.+.++
T Consensus 389 GMTGTa~te~~Ef~~iY~l~Vv~IPTnkp~~R~d~~d~iy~t~~~K~~Aii~ei~~~~~-----~GrpVLV~t~sv~~se 463 (908)
T PRK13107 389 GMTGTADTEAFEFQHIYGLDTVVVPTNRPMVRKDMADLVYLTADEKYQAIIKDIKDCRE-----RGQPVLVGTVSIEQSE 463 (908)
T ss_pred cccCCChHHHHHHHHHhCCCEEECCCCCCccceeCCCcEEeCHHHHHHHHHHHHHHHHH-----cCCCEEEEeCcHHHHH
Confidence 0 0001122333222211 2334456677777777765433 2889999999999999
Q ss_pred HHHHHHhhhcCCCceEEEecCCCCHHHHHHHHHHhhcCCCcEEEeccccccccCCCC-----------------------
Q psy15524 672 YHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPL----------------------- 728 (930)
Q Consensus 672 ~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~v~~~F~~~~~~vLv~T~~~~~GlDip~----------------------- 728 (930)
.++.+|... ++.+..+||++++.+|..+.++|+.|. |+|||++++||+||.=
T Consensus 464 ~ls~~L~~~---gi~~~vLnak~~~~Ea~ii~~Ag~~G~--VtIATnmAGRGTDIkLggn~~~~~~~~~~~~~~~~~~~~ 538 (908)
T PRK13107 464 LLARLMVKE---KIPHEVLNAKFHEREAEIVAQAGRTGA--VTIATNMAGRGTDIVLGGNWNMEIEALENPTAEQKAKIK 538 (908)
T ss_pred HHHHHHHHC---CCCeEeccCcccHHHHHHHHhCCCCCc--EEEecCCcCCCcceecCCchHHhhhhhcchhhHHHHHHH
Confidence 999999985 888999999999999999999999999 9999999999999951
Q ss_pred ---------c-----cEEEEecCCCChhhHHhhhcccccCCCCceEEEEeCcccH
Q psy15524 729 ---------V-----DWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPSEV 769 (930)
Q Consensus 729 ---------v-----~~VI~~~~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~e~ 769 (930)
| -+||....+.|..--.|..||+||.|.+|.+.+|++-++.
T Consensus 539 ~~~~~~~~~V~~~GGL~VIgTerheSrRID~QLrGRaGRQGDPGss~f~lSlED~ 593 (908)
T PRK13107 539 ADWQIRHDEVVAAGGLHILGTERHESRRIDNQLRGRAGRQGDAGSSRFYLSMEDS 593 (908)
T ss_pred HHHHhhHHHHHHcCCCEEEecccCchHHHHhhhhcccccCCCCCceeEEEEeCcH
Confidence 1 2799999999999999999999999999999999996554
|
|
| >TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-28 Score=297.19 Aligned_cols=306 Identities=19% Similarity=0.253 Sum_probs=210.3
Q ss_pred hHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHHHHhhccCCCcceEEE
Q psy15524 422 SIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWL 501 (930)
Q Consensus 422 ~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~ 501 (930)
.+..+.+++.++++|+||||||. .+|.+-.-.. ......+++.-|.|--|..++..+.+..+......+++-
T Consensus 75 Il~~l~~~~vvii~g~TGSGKTT--qlPq~lle~~------~~~~~~I~~tQPRRlAA~svA~RvA~elg~~lG~~VGY~ 146 (1283)
T TIGR01967 75 IAEAIAENQVVIIAGETGSGKTT--QLPKICLELG------RGSHGLIGHTQPRRLAARTVAQRIAEELGTPLGEKVGYK 146 (1283)
T ss_pred HHHHHHhCceEEEeCCCCCCcHH--HHHHHHHHcC------CCCCceEecCCccHHHHHHHHHHHHHHhCCCcceEEeeE
Confidence 34444456678999999999998 4675532211 112235666779888888877776665543222223332
Q ss_pred eCCCchHHHHHHHhcCCcEEEECchhHHHhhhccCCcccccceEEEEecch-hhhhcCcHHH-HHHHHHHHhhcCccceE
Q psy15524 502 TGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEAD-RILDQGYERD-IAEFLEILKKQKPQFQS 579 (930)
Q Consensus 502 ~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah-~l~~~g~~~~-l~~i~~~l~~~~~~~q~ 579 (930)
+...+.. ..+..|.|+|||+|+..+... ..++++++||||||| +.++.+|.-. +..+ +. ..++.|+
T Consensus 147 vR~~~~~------s~~T~I~~~TdGiLLr~l~~d--~~L~~~~~IIIDEaHERsL~~D~LL~lLk~i---l~-~rpdLKl 214 (1283)
T TIGR01967 147 VRFHDQV------SSNTLVKLMTDGILLAETQQD--RFLSRYDTIIIDEAHERSLNIDFLLGYLKQL---LP-RRPDLKI 214 (1283)
T ss_pred EcCCccc------CCCceeeeccccHHHHHhhhC--cccccCcEEEEcCcchhhccchhHHHHHHHH---Hh-hCCCCeE
Confidence 2222221 245789999999999988763 347899999999999 6888776532 3333 22 2357899
Q ss_pred EEEccccCHHHHHHHhhhcCCCEEEEccCCCCcccCccceecCCCceEEEEEcCc------hhhHHHHHHHHHhhccCCC
Q psy15524 580 ILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPP------KLRLVALASFILGKCQNVN 653 (930)
Q Consensus 580 vl~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~l~~~l~~~~~~~~ 653 (930)
++||||++. ..+.+.+...|+ +.+.+... .+...|..... ......+...+...+..
T Consensus 215 IlmSATld~--~~fa~~F~~apv-I~V~Gr~~------------PVev~Y~~~~~~~~~~~~~~~~~i~~~I~~l~~~-- 277 (1283)
T TIGR01967 215 IITSATIDP--ERFSRHFNNAPI-IEVSGRTY------------PVEVRYRPLVEEQEDDDLDQLEAILDAVDELFAE-- 277 (1283)
T ss_pred EEEeCCcCH--HHHHHHhcCCCE-EEECCCcc------------cceeEEecccccccchhhhHHHHHHHHHHHHHhh--
Confidence 999999974 456665544453 43332210 12222322211 12334444444433221
Q ss_pred cCCCceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHHHHHHHHHHhhcCCCcEEEeccccccccCCCCccEEE
Q psy15524 654 EDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIV 733 (930)
Q Consensus 654 ~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~v~~~F~~~~~~vLv~T~~~~~GlDip~v~~VI 733 (930)
..+.+|||+++.++++.+++.|.+....++.+..+||+|++++|..+++.+ +..+|||||+++++|||+|+|++||
T Consensus 278 --~~GdILVFLpg~~EI~~l~~~L~~~~~~~~~VlpLhg~Ls~~eQ~~vf~~~--~~rkIVLATNIAEtSLTIpgV~yVI 353 (1283)
T TIGR01967 278 --GPGDILIFLPGEREIRDAAEILRKRNLRHTEILPLYARLSNKEQQRVFQPH--SGRRIVLATNVAETSLTVPGIHYVI 353 (1283)
T ss_pred --CCCCEEEeCCCHHHHHHHHHHHHhcCCCCcEEEeccCCCCHHHHHHHhCCC--CCceEEEeccHHHhccccCCeeEEE
Confidence 257999999999999999999987644467789999999999999997765 3468999999999999999999999
Q ss_pred EecCC------------------CChhhHHhhhcccccCCCCceEEEEeCcccH
Q psy15524 734 QYTAP------------------SSSTDYVHRVGRTARVGHEGSSLLFLIPSEV 769 (930)
Q Consensus 734 ~~~~p------------------~s~~~y~qr~GRagR~g~~g~~~~~~~~~e~ 769 (930)
+++.+ .|..+|.||.|||||.| +|.|+.+++..+.
T Consensus 354 DsGl~r~~~yd~~~~~~~L~~~~ISkasa~QRaGRAGR~~-~G~cyRLyte~~~ 406 (1283)
T TIGR01967 354 DTGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVA-PGICIRLYSEEDF 406 (1283)
T ss_pred eCCCccccccccccCccccCCccCCHHHHHHHhhhhCCCC-CceEEEecCHHHH
Confidence 98843 36689999999999998 9999999987654
|
This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing. |
| >KOG0334|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.5e-30 Score=293.48 Aligned_cols=255 Identities=32% Similarity=0.495 Sum_probs=219.1
Q ss_pred CCCccCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHH
Q psy15524 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKL 80 (930)
Q Consensus 1 ~g~~~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~ 80 (930)
|||..|+|+|.+|||+|+.|+|+|.+|.||||||++|++|++.++..+++... ..|+-+||++||++|+.|+++.+..+
T Consensus 383 l~y~k~~~IQ~qAiP~ImsGrdvIgvakTgSGKT~af~LPmirhi~dQr~~~~-gdGPi~li~aPtrela~QI~r~~~kf 461 (997)
T KOG0334|consen 383 LGYEKPTPIQAQAIPAIMSGRDVIGVAKTGSGKTLAFLLPMIRHIKDQRPLEE-GDGPIALILAPTRELAMQIHREVRKF 461 (997)
T ss_pred hcCCCCcchhhhhcchhccCcceEEeeccCCccchhhhcchhhhhhcCCChhh-CCCceEEEEcCCHHHHHHHHHHHHHH
Confidence 69999999999999999999999999999999999999999998887665543 45999999999999999999999999
Q ss_pred hhhcCCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcC--CCccCCCccEEEEcccccccccCcHHHHHHHH
Q psy15524 81 CKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHT--ETLKFSKVEHLVLDEADRILDQGYERDIAEFL 158 (930)
Q Consensus 81 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~--~~~~l~~l~~vViDE~h~~~~~~~~~~~~~i~ 158 (930)
+...+ +.+.+.+|+.....+...+++++.|+||||++.++.+..+ ...+++++-++|+||||+|++.+|.|++.+|+
T Consensus 462 ~k~l~-ir~v~vygg~~~~~qiaelkRg~eIvV~tpGRmiD~l~~n~grvtnlrR~t~lv~deaDrmfdmgfePq~~~Ii 540 (997)
T KOG0334|consen 462 LKLLG-IRVVCVYGGSGISQQIAELKRGAEIVVCTPGRMIDILCANSGRVTNLRRVTYLVLDEADRMFDMGFEPQITRIL 540 (997)
T ss_pred HhhcC-ceEEEecCCccHHHHHHHHhcCCceEEeccchhhhhHhhcCCccccccccceeeechhhhhheeccCcccchHH
Confidence 98754 8899999999999999999999999999999999887542 34446777799999999999999999887776
Q ss_pred HHHhhcCCCceEEEEEeecCCCccccccccccccccccchhhhhhhhhhhccchhhHHHHHHHHhhcCcCceEEEEeccc
Q psy15524 159 EILKKQKPQFQSILLSATLTPATCWCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATL 238 (930)
Q Consensus 159 ~~l~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~de~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~sat~ 238 (930)
..++ +++|+++||||+
T Consensus 541 ~nlr----------------------------------------------------------------pdrQtvlfSatf 556 (997)
T KOG0334|consen 541 QNLR----------------------------------------------------------------PDRQTVLFSATF 556 (997)
T ss_pred hhcc----------------------------------------------------------------hhhhhhhhhhhh
Confidence 5552 345999999999
Q ss_pred chHHHHhhhccccCCeeeccCCcccccCCCcccccCCCceeEEEEcC-cchhHHHHHHHHhhhccccccCCcceEEEEEe
Q psy15524 239 TPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTP-PKLRLVALASFILGKCQNVNEDEESKMLVFMA 317 (930)
Q Consensus 239 ~~~~~~l~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~k~~~l~~~l~~~~~~~~~~~~~~~iVF~~ 317 (930)
+..+..++...+..|+.+.+.... .....+.+.+.+|. +..|...|..+|.. .....++||||.
T Consensus 557 pr~m~~la~~vl~~Pveiiv~~~s---------vV~k~V~q~v~V~~~e~eKf~kL~eLl~e------~~e~~~tiiFv~ 621 (997)
T KOG0334|consen 557 PRSMEALARKVLKKPVEIIVGGRS---------VVCKEVTQVVRVCAIENEKFLKLLELLGE------RYEDGKTIIFVD 621 (997)
T ss_pred hHHHHHHHHHhhcCCeeEEEccce---------eEeccceEEEEEecCchHHHHHHHHHHHH------HhhcCCEEEEEc
Confidence 999999999999999876655333 34567899999888 78899999999854 334789999999
Q ss_pred cccchhhhHHHHhhhhhhh
Q psy15524 318 TQDMADYHTELLSTKKKIK 336 (930)
Q Consensus 318 s~~~~~~l~~~L~~~~~~k 336 (930)
+...|+.+.+.|.+.|.-.
T Consensus 622 ~qe~~d~l~~~L~~ag~~~ 640 (997)
T KOG0334|consen 622 KQEKADALLRDLQKAGYNC 640 (997)
T ss_pred CchHHHHHHHHHHhcCcch
Confidence 9999999999998665433
|
|
| >KOG0952|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.5e-29 Score=282.86 Aligned_cols=174 Identities=21% Similarity=0.283 Sum_probs=137.0
Q ss_pred CCCccCcHHHHHHHHHhh-cCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCc-CCCCCCeEEEEEcccHHHHHHHHHHHH
Q psy15524 1 MNITQVTTVQQLSIQPIL-DGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPK-ISRKDGIYAVIILPTRELALQTLEIFT 78 (930)
Q Consensus 1 ~g~~~l~~~Q~~ai~~~~-~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~-~~~~~~~~~lvl~P~~~L~~q~~~~~~ 78 (930)
++|+.++.+|..++|.+. ++.|+|||||||||||.+|++.+++.+.....+ .-..++.+++|++|++|||.++++.+.
T Consensus 106 f~f~~fN~iQS~vFp~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~~~~ 185 (1230)
T KOG0952|consen 106 FSFEEFNRIQSEVFPVAYKSNENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVDKFS 185 (1230)
T ss_pred ccHHHHHHHHHHhhhhhhcCCCCEEEECCCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEechHHHHHHHHHHHh
Confidence 578899999999999876 678999999999999999999999999763222 122468999999999999999999888
Q ss_pred HHhhhcCCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcC-C-CccCCCccEEEEcccccccccCcHHHHHH
Q psy15524 79 KLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHT-E-TLKFSKVEHLVLDEADRILDQGYERDIAE 156 (930)
Q Consensus 79 ~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~-~-~~~l~~l~~vViDE~h~~~~~~~~~~~~~ 156 (930)
+.+..++ +.+.-++|+....... -..++|||+|||.+--.-+.. + ..-+..+++|||||+|.+- +.+++.++.
T Consensus 186 kkl~~~g-i~v~ELTGD~ql~~te---i~~tqiiVTTPEKwDvvTRk~~~d~~l~~~V~LviIDEVHlLh-d~RGpvlEt 260 (1230)
T KOG0952|consen 186 KKLAPLG-ISVRELTGDTQLTKTE---IADTQIIVTTPEKWDVVTRKSVGDSALFSLVRLVIIDEVHLLH-DDRGPVLET 260 (1230)
T ss_pred hhccccc-ceEEEecCcchhhHHH---HHhcCEEEecccceeeeeeeeccchhhhhheeeEEeeeehhhc-CcccchHHH
Confidence 8877666 7888888887654433 345899999999973322221 1 1225789999999999775 456777787
Q ss_pred HHHHHh----hcCCCceEEEEEeecCC
Q psy15524 157 FLEILK----KQKPQFQSILLSATLTP 179 (930)
Q Consensus 157 i~~~l~----~~~~~~~~i~lSAT~~~ 179 (930)
|+.+.. .....++++|||||+|+
T Consensus 261 iVaRtlr~vessqs~IRivgLSATlPN 287 (1230)
T KOG0952|consen 261 IVARTLRLVESSQSMIRIVGLSATLPN 287 (1230)
T ss_pred HHHHHHHHHHhhhhheEEEEeeccCCC
Confidence 776665 55677999999999998
|
|
| >KOG0337|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.9e-30 Score=261.49 Aligned_cols=248 Identities=35% Similarity=0.518 Sum_probs=214.2
Q ss_pred CCccCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHHh
Q psy15524 2 NITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLC 81 (930)
Q Consensus 2 g~~~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~ 81 (930)
||++|||+|++.||.+++|+|++..+-||||||.||++|+++++.... ..|.++++++||++|+.|..+..+.++
T Consensus 40 g~~~ptpiqRKTipliLe~~dvv~martgsgktaaf~ipm~e~Lk~~s-----~~g~RalilsptreLa~qtlkvvkdlg 114 (529)
T KOG0337|consen 40 GFNTPTPIQRKTIPLILEGRDVVGMARTGSGKTAAFLIPMIEKLKSHS-----QTGLRALILSPTRELALQTLKVVKDLG 114 (529)
T ss_pred hcCCCCchhcccccceeeccccceeeecCCcchhhHHHHHHHHHhhcc-----ccccceeeccCcHHHHHHHHHHHHHhc
Confidence 799999999999999999999999999999999999999999987632 347889999999999999999999998
Q ss_pred hhcCCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCcHHHHHHHHHHH
Q psy15524 82 KSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEIL 161 (930)
Q Consensus 82 ~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~~~~~~~i~~~l 161 (930)
...+ ...++++||....++...+..++|||++||+++...... -.+.++.+.|||+||+|.+++.||.+++..++.++
T Consensus 115 rgt~-lr~s~~~ggD~~eeqf~~l~~npDii~ATpgr~~h~~ve-m~l~l~sveyVVfdEadrlfemgfqeql~e~l~rl 192 (529)
T KOG0337|consen 115 RGTK-LRQSLLVGGDSIEEQFILLNENPDIIIATPGRLLHLGVE-MTLTLSSVEYVVFDEADRLFEMGFQEQLHEILSRL 192 (529)
T ss_pred cccc-hhhhhhcccchHHHHHHHhccCCCEEEecCceeeeeehh-eeccccceeeeeehhhhHHHhhhhHHHHHHHHHhC
Confidence 7655 788889999999999999999999999999999776544 33678999999999999999999999988888777
Q ss_pred hhcCCCceEEEEEeecCCCccccccccccccccccchhhhhhhhhhhccchhhHHHHHHHHhhcCcCceEEEEecccchH
Q psy15524 162 KKQKPQFQSILLSATLTPATCWCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLTPA 241 (930)
Q Consensus 162 ~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~de~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~sat~~~~ 241 (930)
+... |+++||||+|..
T Consensus 193 ~~~~----------------------------------------------------------------QTllfSatlp~~ 208 (529)
T KOG0337|consen 193 PESR----------------------------------------------------------------QTLLFSATLPRD 208 (529)
T ss_pred CCcc----------------------------------------------------------------eEEEEeccCchh
Confidence 5432 899999999988
Q ss_pred HHHhhhccccCCeeeccCCcccccCCCcccccCCCceeEEEEcCcchhHHHHHHHHhhhccccccCCcceEEEEEecccc
Q psy15524 242 VQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDM 321 (930)
Q Consensus 242 ~~~l~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~iVF~~s~~~ 321 (930)
...+++.-+.+|+.++.+... .+.+.+...+..+.+.+|..+|..++.+. ....+++|||.|...
T Consensus 209 lv~fakaGl~~p~lVRldvet---------kise~lk~~f~~~~~a~K~aaLl~il~~~------~~~~~t~vf~~tk~h 273 (529)
T KOG0337|consen 209 LVDFAKAGLVPPVLVRLDVET---------KISELLKVRFFRVRKAEKEAALLSILGGR------IKDKQTIVFVATKHH 273 (529)
T ss_pred hHHHHHccCCCCceEEeehhh---------hcchhhhhheeeeccHHHHHHHHHHHhcc------ccccceeEEecccch
Confidence 888889889999888765544 23466777788888899999999999542 235689999999999
Q ss_pred hhhhHHHHhhhhhh
Q psy15524 322 ADYHTELLSTKKKI 335 (930)
Q Consensus 322 ~~~l~~~L~~~~~~ 335 (930)
+|.+...|+..|-.
T Consensus 274 ve~~~~ll~~~g~~ 287 (529)
T KOG0337|consen 274 VEYVRGLLRDFGGE 287 (529)
T ss_pred HHHHHHHHHhcCCC
Confidence 99999999877643
|
|
| >KOG0341|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.1e-31 Score=264.62 Aligned_cols=251 Identities=29% Similarity=0.466 Sum_probs=210.3
Q ss_pred CCccCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCC--cCCCCCCeEEEEEcccHHHHHHHHHHHHH
Q psy15524 2 NITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRP--KISRKDGIYAVIILPTRELALQTLEIFTK 79 (930)
Q Consensus 2 g~~~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~--~~~~~~~~~~lvl~P~~~L~~q~~~~~~~ 79 (930)
|+.+|||+|.+-+|.+++|+|++..|-||||||++|.+|++-....... +.....|+..||+||+||||.|.++.+..
T Consensus 189 GI~~PTpIQvQGlPvvLsGRDmIGIAfTGSGKTlvFvLP~imf~LeqE~~lPf~~~EGP~gLiicPSRELArQt~~iie~ 268 (610)
T KOG0341|consen 189 GIVHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPVIMFALEQEMMLPFARGEGPYGLIICPSRELARQTHDIIEQ 268 (610)
T ss_pred CCCCCCceeecCcceEeecCceeeEEeecCCceEEEeHHHHHHHHHHHhcCccccCCCCeeEEEcCcHHHHHHHHHHHHH
Confidence 8899999999999999999999999999999999999999876655432 33445689999999999999999999988
Q ss_pred Hhhh-----cCCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCcHHHH
Q psy15524 80 LCKS-----FTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDI 154 (930)
Q Consensus 80 ~~~~-----~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~~~~~ 154 (930)
++.. ++.++...+.||.....+...++.+.+|+|+||++|.+++.. ..+.++-++|+++||||+|+|.||+.++
T Consensus 269 ~~~~L~e~g~P~lRs~LciGG~~v~eql~~v~~GvHivVATPGRL~DmL~K-K~~sLd~CRyL~lDEADRmiDmGFEddi 347 (610)
T KOG0341|consen 269 YVAALQEAGYPELRSLLCIGGVPVREQLDVVRRGVHIVVATPGRLMDMLAK-KIMSLDACRYLTLDEADRMIDMGFEDDI 347 (610)
T ss_pred HHHHHHhcCChhhhhhhhhcCccHHHHHHHHhcCeeEEEcCcchHHHHHHH-hhccHHHHHHhhhhhHHHHhhccchhhH
Confidence 8754 345677889999999999999999999999999999999976 7778888999999999999999988888
Q ss_pred HHHHHHHhhcCCCceEEEEEeecCCCccccccccccccccccchhhhhhhhhhhccchhhHHHHHHHHhhcCcCceEEEE
Q psy15524 155 AEFLEILKKQKPQFQSILLSATLTPATCWCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLL 234 (930)
Q Consensus 155 ~~i~~~l~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~de~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~ 234 (930)
+.++..++.. +|+++|
T Consensus 348 r~iF~~FK~Q----------------------------------------------------------------RQTLLF 363 (610)
T KOG0341|consen 348 RTIFSFFKGQ----------------------------------------------------------------RQTLLF 363 (610)
T ss_pred HHHHHHHhhh----------------------------------------------------------------hheeee
Confidence 8777766433 399999
Q ss_pred ecccchHHHHhhhccccCCeeeccCCcccccCCCcccccCCCceeEEEEcCcchhHHHHHHHHhhhccccccCCcceEEE
Q psy15524 235 SATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLV 314 (930)
Q Consensus 235 sat~~~~~~~l~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~iV 314 (930)
|||+|..++.++++.+-.|+.+-+....+ ..-++.|.+.++-.+.|+..|++-| .....|+||
T Consensus 364 SATMP~KIQ~FAkSALVKPvtvNVGRAGA---------AsldViQevEyVkqEaKiVylLeCL--------QKT~PpVLI 426 (610)
T KOG0341|consen 364 SATMPKKIQNFAKSALVKPVTVNVGRAGA---------ASLDVIQEVEYVKQEAKIVYLLECL--------QKTSPPVLI 426 (610)
T ss_pred eccccHHHHHHHHhhcccceEEecccccc---------cchhHHHHHHHHHhhhhhhhHHHHh--------ccCCCceEE
Confidence 99999999999999999999886655432 1223445555555677888887777 234569999
Q ss_pred EEecccchhhhHHHHhhhhh
Q psy15524 315 FMATQDMADYHTELLSTKKK 334 (930)
Q Consensus 315 F~~s~~~~~~l~~~L~~~~~ 334 (930)
||..+.+++.++++|--+|.
T Consensus 427 FaEkK~DVD~IhEYLLlKGV 446 (610)
T KOG0341|consen 427 FAEKKADVDDIHEYLLLKGV 446 (610)
T ss_pred EeccccChHHHHHHHHHccc
Confidence 99999999999999976664
|
|
| >COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.9e-27 Score=263.20 Aligned_cols=326 Identities=21% Similarity=0.283 Sum_probs=243.9
Q ss_pred CCHHHHHHHHhcCCCCCCCHHHHHhHHhhhcC------CcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEE
Q psy15524 398 IHPFMKKNLNEGMNITQVTTVQQLSIQPILDG------GDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVI 471 (930)
Q Consensus 398 l~~~~~~~l~~~~~~~~~~~iQ~~~i~~il~~------~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~li 471 (930)
....+.+.+.+.+.| ++|..|++++..|... -+-++++.-|||||++++++++..+.. |.++..
T Consensus 247 ~~~~l~~~~~~~LPF-~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~~---------G~Q~AL 316 (677)
T COG1200 247 ANGELLAKFLAALPF-KLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIEA---------GYQAAL 316 (677)
T ss_pred ccHHHHHHHHHhCCC-CccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHHHc---------CCeeEE
Confidence 334456666666787 7999999999999864 246899999999999999999988754 889999
Q ss_pred EccCHHHHHHHHHHHHHhhccCCCcceEEEeCCCch---HHHHHHHhcC-CcEEEECchhHHHhhhccCCcccccceEEE
Q psy15524 472 ILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKM---KSEKARIRKG-ISILVATPGRLLDHCKHTETLKFSKVEHLV 547 (930)
Q Consensus 472 l~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~---~~~~~~~~~~-~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lV 547 (930)
++||.-||.|.++.+.+++..++ +.+.+++|.... +.....+..| .+|+|+|..-+- ....++++.++|
T Consensus 317 MAPTEILA~QH~~~~~~~l~~~~-i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALiQ------d~V~F~~LgLVI 389 (677)
T COG1200 317 MAPTEILAEQHYESLRKWLEPLG-IRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALIQ------DKVEFHNLGLVI 389 (677)
T ss_pred eccHHHHHHHHHHHHHHHhhhcC-CeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhhh------cceeecceeEEE
Confidence 99999999999999999999877 567888886544 3344455555 999999954332 456689999999
Q ss_pred EecchhhhhcCcHHHHHHHHHHHhhcCc-cceEEEEccccCHHHHHHHhhhcCCCEEEEccCCCCcccCccceecCCCce
Q psy15524 548 LDEADRILDQGYERDIAEFLEILKKQKP-QFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLK 626 (930)
Q Consensus 548 lDEah~l~~~g~~~~l~~i~~~l~~~~~-~~q~vl~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 626 (930)
+||=||+.-.. ...|..... .+.++.||||+-+..-.+.-..--+ ++..+ .+|..-.
T Consensus 390 iDEQHRFGV~Q--------R~~L~~KG~~~Ph~LvMTATPIPRTLAlt~fgDld---vS~Id-----------ElP~GRk 447 (677)
T COG1200 390 IDEQHRFGVHQ--------RLALREKGEQNPHVLVMTATPIPRTLALTAFGDLD---VSIID-----------ELPPGRK 447 (677)
T ss_pred EeccccccHHH--------HHHHHHhCCCCCcEEEEeCCCchHHHHHHHhcccc---chhhc-----------cCCCCCC
Confidence 99999975332 122233333 4678999999977544433221111 11111 1222222
Q ss_pred EEEEEcCchhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhH--------HHHHHHHhhhcCCCceEEEecCCCCHHH
Q psy15524 627 QHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMA--------DYHTELLSTVLGENIAFFKLHGSMSQSE 698 (930)
Q Consensus 627 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~--------~~~~~~l~~~~~~~~~~~~lhg~~~~~~ 698 (930)
..-..+-+..+...+..++...+.. +.++.+.|+-.++. ...++.|+..++ +..+..+||+|+..+
T Consensus 448 pI~T~~i~~~~~~~v~e~i~~ei~~-----GrQaY~VcPLIeESE~l~l~~a~~~~~~L~~~~~-~~~vgL~HGrm~~~e 521 (677)
T COG1200 448 PITTVVIPHERRPEVYERIREEIAK-----GRQAYVVCPLIEESEKLELQAAEELYEELKSFLP-ELKVGLVHGRMKPAE 521 (677)
T ss_pred ceEEEEeccccHHHHHHHHHHHHHc-----CCEEEEEeccccccccchhhhHHHHHHHHHHHcc-cceeEEEecCCChHH
Confidence 2222222335556666677665543 78999999987655 455677775544 677888999999999
Q ss_pred HHHHHHHhhcCCCcEEEeccccccccCCCCccEEEEecCCC-ChhhHHhhhcccccCCCCceEEEEeCccc
Q psy15524 699 RTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPS-SSTDYVHRVGRTARVGHEGSSLLFLIPSE 768 (930)
Q Consensus 699 R~~v~~~F~~~~~~vLv~T~~~~~GlDip~v~~VI~~~~p~-s~~~y~qr~GRagR~g~~g~~~~~~~~~e 768 (930)
+.+++++|++|+.+|||||.|.+.|||+|+.++.|..+.-. -.++.=|-.||.||.+..+.|++++.+..
T Consensus 522 Kd~vM~~Fk~~e~~ILVaTTVIEVGVdVPnATvMVIe~AERFGLaQLHQLRGRVGRG~~qSyC~Ll~~~~~ 592 (677)
T COG1200 522 KDAVMEAFKEGEIDILVATTVIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGDLQSYCVLLYKPPL 592 (677)
T ss_pred HHHHHHHHHcCCCcEEEEeeEEEecccCCCCeEEEEechhhhhHHHHHHhccccCCCCcceEEEEEeCCCC
Confidence 99999999999999999999999999999999999888654 67888899999999999999999999876
|
|
| >PTZ00424 helicase 45; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.1e-28 Score=275.20 Aligned_cols=244 Identities=25% Similarity=0.461 Sum_probs=183.2
Q ss_pred CCCccCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHH
Q psy15524 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKL 80 (930)
Q Consensus 1 ~g~~~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~ 80 (930)
+||+.|+|+|.+||+.+++|+|++++||||||||++|++|+++.+.. ...+.++|||+|+++|+.|+.+.+..+
T Consensus 46 ~~~~~~~~~Q~~ai~~i~~~~d~ii~apTGsGKT~~~~l~~l~~~~~------~~~~~~~lil~Pt~~L~~Q~~~~~~~~ 119 (401)
T PTZ00424 46 YGFEKPSAIQQRGIKPILDGYDTIGQAQSGTGKTATFVIAALQLIDY------DLNACQALILAPTRELAQQIQKVVLAL 119 (401)
T ss_pred cCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhcC------CCCCceEEEECCCHHHHHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999988753 123567999999999999999999998
Q ss_pred hhhcCCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCcHHHHHHHHHH
Q psy15524 81 CKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEI 160 (930)
Q Consensus 81 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~~~~~~~i~~~ 160 (930)
+.... ..+..+.|+.....+...+..+++|+|+||+++.+.+.+ ....++++++|||||+|++++++|+..+..++..
T Consensus 120 ~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~-~~~~l~~i~lvViDEah~~~~~~~~~~~~~i~~~ 197 (401)
T PTZ00424 120 GDYLK-VRCHACVGGTVVRDDINKLKAGVHMVVGTPGRVYDMIDK-RHLRVDDLKLFILDEADEMLSRGFKGQIYDVFKK 197 (401)
T ss_pred hhhcC-ceEEEEECCcCHHHHHHHHcCCCCEEEECcHHHHHHHHh-CCcccccccEEEEecHHHHHhcchHHHHHHHHhh
Confidence 76544 556667788777777777778899999999999998875 5567899999999999999999988776666544
Q ss_pred HhhcCCCceEEEEEeecCCCccccccccccccccccchhhhhhhhhhhccchhhHHHHHHHHhhcCcCceEEEEecccch
Q psy15524 161 LKKQKPQFQSILLSATLTPATCWCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLTP 240 (930)
Q Consensus 161 l~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~de~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~sat~~~ 240 (930)
+ .+++|++++|||+++
T Consensus 198 ~---~~~~~~i~~SAT~~~------------------------------------------------------------- 213 (401)
T PTZ00424 198 L---PPDVQVALFSATMPN------------------------------------------------------------- 213 (401)
T ss_pred C---CCCcEEEEEEecCCH-------------------------------------------------------------
Confidence 3 445677777777653
Q ss_pred HHHHhhhccccCCeeeccCCcccccCCCcccccCCCceeEEEEcCc-chhHHHHHHHHhhhccccccCCcceEEEEEecc
Q psy15524 241 AVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPP-KLRLVALASFILGKCQNVNEDEESKMLVFMATQ 319 (930)
Q Consensus 241 ~~~~l~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~k~~~l~~~l~~~~~~~~~~~~~~~iVF~~s~ 319 (930)
....+...++.++..+...... .....+.+++..++. ..+...+..++ ......++||||+++
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~l~~~~-------~~~~~~~~ivF~~t~ 277 (401)
T PTZ00424 214 EILELTTKFMRDPKRILVKKDE---------LTLEGIRQFYVAVEKEEWKFDTLCDLY-------ETLTITQAIIYCNTR 277 (401)
T ss_pred HHHHHHHHHcCCCEEEEeCCCC---------cccCCceEEEEecChHHHHHHHHHHHH-------HhcCCCeEEEEecCc
Confidence 2222222333333333222111 113446666666554 34566666665 233456899999999
Q ss_pred cchhhhHHHHhhh
Q psy15524 320 DMADYHTELLSTK 332 (930)
Q Consensus 320 ~~~~~l~~~L~~~ 332 (930)
+.++.++..|+..
T Consensus 278 ~~~~~l~~~l~~~ 290 (401)
T PTZ00424 278 RKVDYLTKKMHER 290 (401)
T ss_pred HHHHHHHHHHHHC
Confidence 9999999998653
|
|
| >KOG0347|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.1e-30 Score=270.71 Aligned_cols=274 Identities=30% Similarity=0.407 Sum_probs=198.9
Q ss_pred CCCccCcHHHHHHHHHhhcC-CcEEEEcCCCChHHHHHHHHHHHHHHhhCCc-------CCCCCCeEEEEEcccHHHHHH
Q psy15524 1 MNITQVTTVQQLSIQPILDG-GDVLVRSQTGSGKTLAYAIPIIQKLQEMRPK-------ISRKDGIYAVIILPTRELALQ 72 (930)
Q Consensus 1 ~g~~~l~~~Q~~ai~~~~~g-~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~-------~~~~~~~~~lvl~P~~~L~~q 72 (930)
+||..||++|..++|++..| .|++..|.||||||++|-+|++..+...... ......+.+||++||||||.|
T Consensus 199 ~gFs~Pt~IQsl~lp~ai~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~~~~~~k~~k~~~LV~tPTRELa~Q 278 (731)
T KOG0347|consen 199 LGFSRPTEIQSLVLPAAIRGKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQELSNTSAKYVKPIALVVTPTRELAHQ 278 (731)
T ss_pred cCCCCCccchhhcccHhhccchhcccccccCCCceeeecchhhhhhhhccchHhhhhhHHhccCcceeEEecChHHHHHH
Confidence 69999999999999999999 7999999999999999999999966543221 111223359999999999999
Q ss_pred HHHHHHHHhhhcCCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcCCC--ccCCCccEEEEcccccccccCc
Q psy15524 73 TLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTET--LKFSKVEHLVLDEADRILDQGY 150 (930)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~--~~l~~l~~vViDE~h~~~~~~~ 150 (930)
+.+.+..++... .+.+..+.||-....+.+.+...++|+|+||+||+.++...+. -.+++++++|+||+|+|++.|+
T Consensus 279 V~~Hl~ai~~~t-~i~v~si~GGLavqKQqRlL~~~p~IVVATPGRlweli~e~n~~l~~~k~vkcLVlDEaDRmvekgh 357 (731)
T KOG0347|consen 279 VKQHLKAIAEKT-QIRVASITGGLAVQKQQRLLNQRPDIVVATPGRLWELIEEDNTHLGNFKKVKCLVLDEADRMVEKGH 357 (731)
T ss_pred HHHHHHHhcccc-CeEEEEeechhHHHHHHHHHhcCCCEEEecchHHHHHHHhhhhhhhhhhhceEEEEccHHHHhhhcc
Confidence 999999998754 4888899999999999999999999999999999999876543 3478999999999999999999
Q ss_pred HHHHHHHHHHHhh--cCCCceEEEEEeecCCCccccccccccccccccchhhhhhhhhhhccchhhHHHHHHHHhhcCcC
Q psy15524 151 ERDIAEFLEILKK--QKPQFQSILLSATLTPATCWCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQ 228 (930)
Q Consensus 151 ~~~~~~i~~~l~~--~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~de~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (930)
...+..|+..|.. .++..|.+-||||+.-..+-... +.. .....
T Consensus 358 F~Els~lL~~L~e~~~~~qrQTlVFSATlt~~~~~~~~-------------------~~~---------------k~~~k 403 (731)
T KOG0347|consen 358 FEELSKLLKHLNEEQKNRQRQTLVFSATLTLVLQQPLS-------------------SSR---------------KKKDK 403 (731)
T ss_pred HHHHHHHHHHhhhhhcccccceEEEEEEeehhhcChhH-------------------Hhh---------------hccch
Confidence 9999999999973 34567999999999632110000 000 00000
Q ss_pred ceEEEEecccchHHHHhhhc--cccCCeeeccCCcccccCCCcccccCCCceeEEEEcCcchhHHHHHHHHhhhcccccc
Q psy15524 229 FQSVLLSATLTPAVQRLAGM--TLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALASFILGKCQNVNE 306 (930)
Q Consensus 229 ~q~~~~sat~~~~~~~l~~~--~l~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~~~ 306 (930)
+ .+.+..++.+... +..+|..|+.....+ ....+..-.+.|+..+|-..|.-+| .
T Consensus 404 ~------~~~~~kiq~Lmk~ig~~~kpkiiD~t~q~~---------ta~~l~Es~I~C~~~eKD~ylyYfl--------~ 460 (731)
T KOG0347|consen 404 E------DELNAKIQHLMKKIGFRGKPKIIDLTPQSA---------TASTLTESLIECPPLEKDLYLYYFL--------T 460 (731)
T ss_pred h------hhhhHHHHHHHHHhCccCCCeeEecCcchh---------HHHHHHHHhhcCCccccceeEEEEE--------e
Confidence 0 1222233333332 223445555444331 2233444444555555555554445 4
Q ss_pred CCcceEEEEEecccchhhhHHHHhhh
Q psy15524 307 DEESKMLVFMATQDMADYHTELLSTK 332 (930)
Q Consensus 307 ~~~~~~iVF~~s~~~~~~l~~~L~~~ 332 (930)
+.++++|||||+.+.+.+++.+|+..
T Consensus 461 ryPGrTlVF~NsId~vKRLt~~L~~L 486 (731)
T KOG0347|consen 461 RYPGRTLVFCNSIDCVKRLTVLLNNL 486 (731)
T ss_pred ecCCceEEEechHHHHHHHHHHHhhc
Confidence 56789999999999999999998753
|
|
| >PRK09694 helicase Cas3; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.7e-27 Score=280.46 Aligned_cols=328 Identities=20% Similarity=0.190 Sum_probs=208.6
Q ss_pred CCCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHHHHh
Q psy15524 410 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKL 489 (930)
Q Consensus 410 ~~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~ 489 (930)
++...|+|+|+.+......+.-+++.||||+|||.+++..+...+.. ....+++|..||++++.|+++++.++
T Consensus 282 ~~~~~p~p~Q~~~~~~~~~pgl~ileApTGsGKTEAAL~~A~~l~~~-------~~~~gi~~aLPT~Atan~m~~Rl~~~ 354 (878)
T PRK09694 282 DNGYQPRQLQTLVDALPLQPGLTIIEAPTGSGKTEAALAYAWRLIDQ-------GLADSIIFALPTQATANAMLSRLEAL 354 (878)
T ss_pred cCCCCChHHHHHHHhhccCCCeEEEEeCCCCCHHHHHHHHHHHHHHh-------CCCCeEEEECcHHHHHHHHHHHHHHH
Confidence 44558999999886554445668999999999999987776654432 33568999999999999999998875
Q ss_pred hccC-CCcceEEEeCCCchHHHH---------------------HHHh---c---CCcEEEECchhHHHhhhccCCcccc
Q psy15524 490 CKSF-TWIVPSWLTGGEKMKSEK---------------------ARIR---K---GISILVATPGRLLDHCKHTETLKFS 541 (930)
Q Consensus 490 ~~~~-~~~~~~~~~gg~~~~~~~---------------------~~~~---~---~~~Ilv~Tp~rl~~~l~~~~~~~~~ 541 (930)
.... ......++.|........ ..+. + -.+|+|||+..++......+...++
T Consensus 355 ~~~~f~~~~v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL~a~l~~kh~~lR 434 (878)
T PRK09694 355 ASKLFPSPNLILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVLISVLPVKHRFIR 434 (878)
T ss_pred HHHhcCCCceEeecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHHHHHHccchHHHH
Confidence 4322 222344444443211100 1111 1 1689999999987544433323333
Q ss_pred cc----eEEEEecchhhhhcCcHHHHHHHHHHHhhcCccceEEEEccccCHHHHH-HHhhhcCC-CE-------EEEccC
Q psy15524 542 KV----EHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPAVQR-LAGMTLQN-PI-------QIDAAD 608 (930)
Q Consensus 542 ~l----~~lVlDEah~l~~~g~~~~l~~i~~~l~~~~~~~q~vl~SAT~~~~~~~-l~~~~~~~-~~-------~i~~~~ 608 (930)
.+ ++|||||+|.+ +......+..+++.+... ..++++||||+|....+ +...+-.. +. .+....
T Consensus 435 ~~~La~svvIiDEVHAy-D~ym~~lL~~~L~~l~~~--g~~vIllSATLP~~~r~~L~~a~~~~~~~~~~~~YPlvt~~~ 511 (878)
T PRK09694 435 GFGLGRSVLIVDEVHAY-DAYMYGLLEAVLKAQAQA--GGSVILLSATLPATLKQKLLDTYGGHDPVELSSAYPLITWRG 511 (878)
T ss_pred HHhhccCeEEEechhhC-CHHHHHHHHHHHHHHHhc--CCcEEEEeCCCCHHHHHHHHHHhccccccccccccccccccc
Confidence 33 38999999987 444456667777776543 56799999999987654 33332111 10 000000
Q ss_pred CCCcccCccceecCC--CceEEEEE--c--CchhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcC
Q psy15524 609 STDIHNTTDSLVIPD--SLKQHFIV--T--PPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLG 682 (930)
Q Consensus 609 ~~~~~~~~~~~~~~~--~~~~~~~~--~--~~~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~ 682 (930)
.... .......-+. .....+.+ . ........+...+..... .+++++|||||++.++.+++.|++..+
T Consensus 512 ~~~~-~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~l~~i~~~~~-----~g~~vLVf~NTV~~Aq~ly~~L~~~~~ 585 (878)
T PRK09694 512 VNGA-QRFDLSAHPEQLPARFTIQLEPICLADMLPDLTLLQRMIAAAN-----AGAQVCLICNLVDDAQKLYQRLKELNN 585 (878)
T ss_pred cccc-eeeeccccccccCcceEEEEEeeccccccCHHHHHHHHHHHHh-----cCCEEEEEECCHHHHHHHHHHHHhhCC
Confidence 0000 0000000000 01111111 1 110111222333322211 267999999999999999999987644
Q ss_pred CCceEEEecCCCCHHHHH----HHHHHh-hcCC---CcEEEeccccccccCCCCccEEEEecCCCChhhHHhhhcccccC
Q psy15524 683 ENIAFFKLHGSMSQSERT----EVFKTF-RSVK---SGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARV 754 (930)
Q Consensus 683 ~~~~~~~lhg~~~~~~R~----~v~~~F-~~~~---~~vLv~T~~~~~GlDip~v~~VI~~~~p~s~~~y~qr~GRagR~ 754 (930)
....+..+||++++.+|. ++++.| ++|+ ..|||||+++++|+|+ +++++|....| .+.++||+||++|.
T Consensus 586 ~~~~v~llHsrf~~~dR~~~E~~vl~~fgk~g~r~~~~ILVaTQViE~GLDI-d~DvlItdlaP--idsLiQRaGR~~R~ 662 (878)
T PRK09694 586 TQVDIDLFHARFTLNDRREKEQRVIENFGKNGKRNQGRILVATQVVEQSLDL-DFDWLITQLCP--VDLLFQRLGRLHRH 662 (878)
T ss_pred CCceEEEEeCCCCHHHHHHHHHHHHHHHHhcCCcCCCeEEEECcchhheeec-CCCeEEECCCC--HHHHHHHHhccCCC
Confidence 446788999999999994 567788 5665 3699999999999999 58999998888 68999999999998
Q ss_pred CC
Q psy15524 755 GH 756 (930)
Q Consensus 755 g~ 756 (930)
+.
T Consensus 663 ~~ 664 (878)
T PRK09694 663 HR 664 (878)
T ss_pred CC
Confidence 76
|
|
| >KOG0350|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.1e-29 Score=261.53 Aligned_cols=279 Identities=32% Similarity=0.508 Sum_probs=213.0
Q ss_pred CCCccCcHHHHHHHHHhhc---------CCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHH
Q psy15524 1 MNITQVTTVQQLSIQPILD---------GGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELAL 71 (930)
Q Consensus 1 ~g~~~l~~~Q~~ai~~~~~---------g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~ 71 (930)
|++..+-|+|..++|.++. ++|++|.||||||||++|.+|+++.+.... .+..++|||+||++|+.
T Consensus 155 ~~is~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIVQ~L~~R~-----v~~LRavVivPtr~L~~ 229 (620)
T KOG0350|consen 155 MAISRLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIVQLLSSRP-----VKRLRAVVIVPTRELAL 229 (620)
T ss_pred hhcccccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHHHHHccCC-----ccceEEEEEeeHHHHHH
Confidence 5788999999999999852 579999999999999999999999997632 23477999999999999
Q ss_pred HHHHHHHHHhhhcCCceeEEeeCCCchHHHHHHhcCC-C----cEEEEChHHHHHHHhcCCCccCCCccEEEEccccccc
Q psy15524 72 QTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKG-I----SILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRIL 146 (930)
Q Consensus 72 q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~-~----~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~ 146 (930)
|+++.|.+++...+ +.+..+.|..+.......+.+. + ||+|+||+||.+++.+...+.+++++++||||||+|+
T Consensus 230 QV~~~f~~~~~~tg-L~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRLVDHl~~~k~f~Lk~LrfLVIDEADRll 308 (620)
T KOG0350|consen 230 QVYDTFKRLNSGTG-LAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGRLVDHLNNTKSFDLKHLRFLVIDEADRLL 308 (620)
T ss_pred HHHHHHHHhccCCc-eEEEecccccchHHHHHHHhcCCCccccceEEcCchHHHHhccCCCCcchhhceEEEechHHHHH
Confidence 99999999998766 5577788888777766666543 3 8999999999999998899999999999999999999
Q ss_pred ccCcHHHHHHHHHHHhhcCCCceEEEEEeecCCCccccccccccccccccchhhhhhhhhhhccch---hhHHHHHHHHh
Q psy15524 147 DQGYERDIAEFLEILKKQKPQFQSILLSATLTPATCWCKHTETLKFSKVEHLVLDEADRILDQGYE---RDIAEFLEILK 223 (930)
Q Consensus 147 ~~~~~~~~~~i~~~l~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~de~~~~~~~~~~---~~~~~~~~~~~ 223 (930)
+..|...+..+...+...... . --+.++.+.+. --+.+++..+.
T Consensus 309 ~qsfQ~Wl~~v~~~~~~~k~~----~-----------------------------~~~nii~~~~~~~pt~~~e~~t~~~ 355 (620)
T KOG0350|consen 309 DQSFQEWLDTVMSLCKTMKRV----A-----------------------------CLDNIIRQRQAPQPTVLSELLTKLG 355 (620)
T ss_pred HHHHHHHHHHHHHHhCCchhh----c-----------------------------ChhhhhhhcccCCchhhHHHHhhcC
Confidence 998887777666655433100 0 00011111110 00112222222
Q ss_pred hcCcCceEEEEecccchHHHHhhhccccCCeeeccCCcccccCCCcccccCCCceeEEEEcCcchhHHHHHHHHhhhccc
Q psy15524 224 KQKPQFQSVLLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALASFILGKCQN 303 (930)
Q Consensus 224 ~~~~~~q~~~~sat~~~~~~~l~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~ 303 (930)
...+..+.++||+|+.+...++.+.-+..|..+-+... -...+.+|+.+.+.+..++...|...+..++
T Consensus 356 ~~~~~l~kL~~satLsqdP~Kl~~l~l~~Prl~~v~~~-----~~~ryslp~~l~~~~vv~~~~~kpl~~~~lI------ 424 (620)
T KOG0350|consen 356 KLYPPLWKLVFSATLSQDPSKLKDLTLHIPRLFHVSKP-----LIGRYSLPSSLSHRLVVTEPKFKPLAVYALI------ 424 (620)
T ss_pred CcCchhHhhhcchhhhcChHHHhhhhcCCCceEEeecc-----cceeeecChhhhhceeecccccchHhHHHHH------
Confidence 22334578999999999998888877777744332211 1234568899999999999889999999999
Q ss_pred cccCCcceEEEEEecccchhhhHHHHh
Q psy15524 304 VNEDEESKMLVFMATQDMADYHTELLS 330 (930)
Q Consensus 304 ~~~~~~~~~iVF~~s~~~~~~l~~~L~ 330 (930)
......++|+|+++.+.+.+++..|+
T Consensus 425 -~~~k~~r~lcf~~S~~sa~Rl~~~L~ 450 (620)
T KOG0350|consen 425 -TSNKLNRTLCFVNSVSSANRLAHVLK 450 (620)
T ss_pred -HHhhcceEEEEecchHHHHHHHHHHH
Confidence 45677899999999999999999997
|
|
| >TIGR00595 priA primosomal protein N' | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.6e-27 Score=271.43 Aligned_cols=305 Identities=18% Similarity=0.209 Sum_probs=199.4
Q ss_pred EEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHHHHhhccCCCcceEEEeCCCchHH---
Q psy15524 433 LVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKS--- 509 (930)
Q Consensus 433 lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~--- 509 (930)
++.|+||||||.+|+..+...+. .|.++||++|+++|+.|+++.+++.+.. .+..+.++.....
T Consensus 1 LL~g~TGsGKT~v~l~~i~~~l~---------~g~~vLvlvP~i~L~~Q~~~~l~~~f~~----~v~vlhs~~~~~er~~ 67 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQAIEKVLA---------LGKSVLVLVPEIALTPQMIQRFKYRFGS----QVAVLHSGLSDSEKLQ 67 (505)
T ss_pred CccCCCCCCHHHHHHHHHHHHHH---------cCCeEEEEeCcHHHHHHHHHHHHHHhCC----cEEEEECCCCHHHHHH
Confidence 46899999999999766655543 2678999999999999999999886531 2445566654332
Q ss_pred HHHHHhc-CCcEEEECchhHHHhhhccCCcccccceEEEEecchhhhhcCc------HHHHHHHHHHHhhcCccceEEEE
Q psy15524 510 EKARIRK-GISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGY------ERDIAEFLEILKKQKPQFQSILL 582 (930)
Q Consensus 510 ~~~~~~~-~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~l~~~g~------~~~l~~i~~~l~~~~~~~q~vl~ 582 (930)
.+..+.. ..+|+|+|+..+. ..+.++++|||||+|.....+- ...+..+.... .+.+++++
T Consensus 68 ~~~~~~~g~~~IVVGTrsalf--------~p~~~l~lIIVDEeh~~sykq~~~p~y~ar~~a~~ra~~----~~~~vil~ 135 (505)
T TIGR00595 68 AWRKVKNGEILVVIGTRSALF--------LPFKNLGLIIVDEEHDSSYKQEEGPRYHARDVAVYRAKK----FNCPVVLG 135 (505)
T ss_pred HHHHHHcCCCCEEECChHHHc--------CcccCCCEEEEECCCccccccccCCCCcHHHHHHHHHHh----cCCCEEEE
Confidence 2333333 4799999998663 2467899999999998764431 12333333332 37899999
Q ss_pred ccccCHHHHHHHhhhcCCCEEEEccCCCCcccCccceecCCCceEEEEEcCchh----hHHHHHHHHHhhccCCCcCCCc
Q psy15524 583 SATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKL----RLVALASFILGKCQNVNEDEES 658 (930)
Q Consensus 583 SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~~~l~~~~~~~~~~~~~ 658 (930)
|||++.+....+.. .....+....... .. ..| ...++...... -...+...+.+.... ++
T Consensus 136 SATPsles~~~~~~--g~~~~~~l~~r~~-~~-----~~p---~v~vid~~~~~~~~~ls~~l~~~i~~~l~~-----g~ 199 (505)
T TIGR00595 136 SATPSLESYHNAKQ--KAYRLLVLTRRVS-GR-----KPP---EVKLIDMRKEPRQSFLSPELITAIEQTLAA-----GE 199 (505)
T ss_pred eCCCCHHHHHHHhc--CCeEEeechhhhc-CC-----CCC---eEEEEecccccccCCccHHHHHHHHHHHHc-----CC
Confidence 99987554443322 1111111111000 00 000 00111111110 112334444433322 56
Q ss_pred eEEEEecchhh------------------------------------------------------------HHHHHHHHh
Q psy15524 659 KMLVFMATQDM------------------------------------------------------------ADYHTELLS 678 (930)
Q Consensus 659 k~iVF~~s~~~------------------------------------------------------------~~~~~~~l~ 678 (930)
++|||++++.. ++.+.+.|.
T Consensus 200 qvLvflnrrGya~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~C~s~~l~~~g~Gte~~~e~l~ 279 (505)
T TIGR00595 200 QSILFLNRRGYSKNLLCRSCGYILCCPNCDVSLTYHKKEGKLRCHYCGYQEPIPKTCPQCGSEDLVYKGYGTEQVEEELA 279 (505)
T ss_pred cEEEEEeCCcCCCeeEhhhCcCccCCCCCCCceEEecCCCeEEcCCCcCcCCCCCCCCCCCCCeeEeecccHHHHHHHHH
Confidence 88888554321 366677777
Q ss_pred hhcCCCceEEEecCCCCHHHH--HHHHHHhhcCCCcEEEeccccccccCCCCccEEE--EecC----CC------ChhhH
Q psy15524 679 TVLGENIAFFKLHGSMSQSER--TEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIV--QYTA----PS------SSTDY 744 (930)
Q Consensus 679 ~~~~~~~~~~~lhg~~~~~~R--~~v~~~F~~~~~~vLv~T~~~~~GlDip~v~~VI--~~~~----p~------s~~~y 744 (930)
+.++ +..+..+|+++++..+ +.+++.|++|+.+|||+|+++++|+|+|+|++|+ ++|. |. ....|
T Consensus 280 ~~fp-~~~v~~~d~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~i~kG~d~~~v~lV~vl~aD~~l~~pd~ra~E~~~~ll 358 (505)
T TIGR00595 280 KLFP-GARIARIDSDTTSRKGAHEALLNQFANGKADILIGTQMIAKGHHFPNVTLVGVLDADSGLHSPDFRAAERGFQLL 358 (505)
T ss_pred hhCC-CCcEEEEecccccCccHHHHHHHHHhcCCCCEEEeCcccccCCCCCcccEEEEEcCcccccCcccchHHHHHHHH
Confidence 7664 6788999999987766 8999999999999999999999999999999886 4443 21 24678
Q ss_pred HhhhcccccCCCCceEEEEeCcccHHHHHHHHhcC
Q psy15524 745 VHRVGRTARVGHEGSSLLFLIPSEVKLVEELQNRR 779 (930)
Q Consensus 745 ~qr~GRagR~g~~g~~~~~~~~~e~~~~~~l~~~~ 779 (930)
+|++||+||.++.|.+++.....+...++.+...+
T Consensus 359 ~q~~GRagR~~~~g~viiqt~~p~~~~~~~~~~~d 393 (505)
T TIGR00595 359 TQVAGRAGRAEDPGQVIIQTYNPNHPAIQAALTGD 393 (505)
T ss_pred HHHHhccCCCCCCCEEEEEeCCCCCHHHHHHHhCC
Confidence 99999999999999998777665555666665543
|
All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >cd00268 DEADc DEAD-box helicases | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.1e-27 Score=240.41 Aligned_cols=202 Identities=44% Similarity=0.676 Sum_probs=176.1
Q ss_pred CCCCCCCCHHHHHHHHhcCCCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEE
Q psy15524 392 YEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVI 471 (930)
Q Consensus 392 f~~l~~l~~~~~~~l~~~~~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~li 471 (930)
|+++ ++++.+.+.+.+ +|+..|+++|.++++.+++|+|+++++|||+|||++|++|+++.+.... ...+++++|
T Consensus 1 ~~~~-~~~~~i~~~l~~-~~~~~~~~~Q~~~~~~~~~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~----~~~~~~vii 74 (203)
T cd00268 1 FEEL-GLSPELLRGIYA-LGFEKPTPIQARAIPPLLSGRDVIGQAQTGSGKTAAFLIPILEKLDPSP----KKDGPQALI 74 (203)
T ss_pred CCcC-CCCHHHHHHHHH-cCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHHHHhhc----ccCCceEEE
Confidence 6778 899999999986 8999999999999999999999999999999999999999999987632 135788999
Q ss_pred EccCHHHHHHHHHHHHHhhccCCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhccCCcccccceEEEEecc
Q psy15524 472 ILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEA 551 (930)
Q Consensus 472 l~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlDEa 551 (930)
++||++|+.|+.+.+..+.... ...+..+.|+.........+..+++|+|+||+++.+++.+. ...+.+++++|+||+
T Consensus 75 i~p~~~L~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~-~~~~~~l~~lIvDE~ 152 (203)
T cd00268 75 LAPTRELALQIAEVARKLGKHT-NLKVVVIYGGTSIDKQIRKLKRGPHIVVATPGRLLDLLERG-KLDLSKVKYLVLDEA 152 (203)
T ss_pred EcCCHHHHHHHHHHHHHHhccC-CceEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcC-CCChhhCCEEEEeCh
Confidence 9999999999999999887653 35566778887766666666668999999999999988764 467889999999999
Q ss_pred hhhhhcCcHHHHHHHHHHHhhcCccceEEEEccccCHHHHHHHhhhcCCCEEE
Q psy15524 552 DRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQI 604 (930)
Q Consensus 552 h~l~~~g~~~~l~~i~~~l~~~~~~~q~vl~SAT~~~~~~~l~~~~~~~~~~i 604 (930)
|.+.+.++...+..+++.++. .+|++++|||+++.+..+....+.+|+++
T Consensus 153 h~~~~~~~~~~~~~~~~~l~~---~~~~~~~SAT~~~~~~~~~~~~~~~~~~~ 202 (203)
T cd00268 153 DRMLDMGFEDQIREILKLLPK---DRQTLLFSATMPKEVRDLARKFLRNPVRI 202 (203)
T ss_pred HHhhccChHHHHHHHHHhCCc---ccEEEEEeccCCHHHHHHHHHHCCCCEEe
Confidence 999999999999888887754 88999999999999999999999888775
|
A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region. |
| >KOG0947|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.9e-27 Score=260.23 Aligned_cols=333 Identities=22% Similarity=0.252 Sum_probs=235.2
Q ss_pred CCCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHHHHh
Q psy15524 410 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKL 489 (930)
Q Consensus 410 ~~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~ 489 (930)
++| .+-+.|++||-++..|..|+|.|+|.+|||+++..++...- ..+.+++|-+|-++|..|-++.|+..
T Consensus 294 ~pF-elD~FQk~Ai~~lerg~SVFVAAHTSAGKTvVAEYAialaq---------~h~TR~iYTSPIKALSNQKfRDFk~t 363 (1248)
T KOG0947|consen 294 YPF-ELDTFQKEAIYHLERGDSVFVAAHTSAGKTVVAEYAIALAQ---------KHMTRTIYTSPIKALSNQKFRDFKET 363 (1248)
T ss_pred CCC-CccHHHHHHHHHHHcCCeEEEEecCCCCcchHHHHHHHHHH---------hhccceEecchhhhhccchHHHHHHh
Confidence 455 68899999999999999999999999999999887776433 24788999999999999999999988
Q ss_pred hccCCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhccCCcccccceEEEEecchhhhhcCcHHHHHHHHHH
Q psy15524 490 CKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEI 569 (930)
Q Consensus 490 ~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~l~~~g~~~~l~~i~~~ 569 (930)
+... ++++|+.... ..+.++|+|.+.|-+++.+... -.+++++||+||+|-+.|...+-.++.++-+
T Consensus 364 F~Dv-----gLlTGDvqin-------PeAsCLIMTTEILRsMLYrgad-liRDvE~VIFDEVHYiND~eRGvVWEEViIM 430 (1248)
T KOG0947|consen 364 FGDV-----GLLTGDVQIN-------PEASCLIMTTEILRSMLYRGAD-LIRDVEFVIFDEVHYINDVERGVVWEEVIIM 430 (1248)
T ss_pred cccc-----ceeecceeeC-------CCcceEeehHHHHHHHHhcccc-hhhccceEEEeeeeecccccccccceeeeee
Confidence 7643 3678886544 3578999999999999887444 3688999999999999998888888888888
Q ss_pred HhhcCccceEEEEccccCHH--HHHHHhhhcCCCEEEEccCCCC-------------c-----------------ccCc-
Q psy15524 570 LKKQKPQFQSILLSATLTPA--VQRLAGMTLQNPIQIDAADSTD-------------I-----------------HNTT- 616 (930)
Q Consensus 570 l~~~~~~~q~vl~SAT~~~~--~~~l~~~~~~~~~~i~~~~~~~-------------~-----------------~~~~- 616 (930)
+|+ ..++|++|||+|+. ..+|.+..-+..+++....... . ....
T Consensus 431 lP~---HV~~IlLSATVPN~~EFA~WIGRtK~K~IyViST~kRPVPLEh~l~t~~~l~kiidq~g~fl~~~~~~a~~~~~ 507 (1248)
T KOG0947|consen 431 LPR---HVNFILLSATVPNTLEFADWIGRTKQKTIYVISTSKRPVPLEHYLYTKKSLFKIIDQNGIFLLKGIKDAKDSLK 507 (1248)
T ss_pred ccc---cceEEEEeccCCChHHHHHHhhhccCceEEEEecCCCccceEEEEEeccceehhhcccchhhhhcchhhhhhhc
Confidence 876 89999999999985 4456555544433322110000 0 0000
Q ss_pred --cceec-------------CCCceEEEEE------cCchhh-----HHHHHHHHHhhccCCCcCCCceEEEEecchhhH
Q psy15524 617 --DSLVI-------------PDSLKQHFIV------TPPKLR-----LVALASFILGKCQNVNEDEESKMLVFMATQDMA 670 (930)
Q Consensus 617 --~~~~~-------------~~~~~~~~~~------~~~~~~-----~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~ 670 (930)
..++. ...-++.+.. .+.+.+ ...++..+... .--|+||||-+++.|
T Consensus 508 ~~ak~~~~~~~~~~~~rgs~~~ggk~~~~~g~~r~~~~~~nrr~~~~~l~lin~L~k~-------~lLP~VvFvFSkkrC 580 (1248)
T KOG0947|consen 508 KEAKFVDVEKSDARGGRGSQKRGGKTNYHNGGSRGSGIGKNRRKQPTWLDLINHLRKK-------NLLPVVVFVFSKKRC 580 (1248)
T ss_pred ccccccccccccccccccccccCCcCCCCCCCcccccccccccccchHHHHHHHHhhc-------ccCceEEEEEccccH
Confidence 00000 0000000000 000111 22222222211 145899999999999
Q ss_pred HHHHHHHhhh--------------------------------------cCCCceEEEecCCCCHHHHHHHHHHhhcCCCc
Q psy15524 671 DYHTELLSTV--------------------------------------LGENIAFFKLHGSMSQSERTEVFKTFRSVKSG 712 (930)
Q Consensus 671 ~~~~~~l~~~--------------------------------------~~~~~~~~~lhg~~~~~~R~~v~~~F~~~~~~ 712 (930)
+..++.|..+ +.+|+.++ ||++-+--++-|+-.|..|-++
T Consensus 581 de~a~~L~~~nL~~~~EKseV~lfl~k~~~rLk~~DR~LPQvl~m~~ll~RGiaVH--H~GlLPivKE~VE~LFqrGlVK 658 (1248)
T KOG0947|consen 581 DEYADYLTNLNLTDSKEKSEVHLFLSKAVARLKGEDRNLPQVLSMRSLLLRGIAVH--HGGLLPIVKEVVELLFQRGLVK 658 (1248)
T ss_pred HHHHHHHhccCcccchhHHHHHHHHHHHHHhcChhhccchHHHHHHHHHhhcchhh--cccchHHHHHHHHHHHhcCceE
Confidence 9888777543 11255555 9999999999999999999999
Q ss_pred EEEeccccccccCCCCccEEEEec--------CCCChhhHHhhhcccccCCCC--ceEEEEeCcc--cHHHHHHHHh
Q psy15524 713 VLICTDVAARGLDLPLVDWIVQYT--------APSSSTDYVHRVGRTARVGHE--GSSLLFLIPS--EVKLVEELQN 777 (930)
Q Consensus 713 vLv~T~~~~~GlDip~v~~VI~~~--------~p~s~~~y~qr~GRagR~g~~--g~~~~~~~~~--e~~~~~~l~~ 777 (930)
||+||.++|+|+|.|+-++|+..- .-..+.+|.||+|||||.|-+ |..+++.... +..-++.+.-
T Consensus 659 VLFATETFAMGVNMPARtvVF~Sl~KhDG~efR~L~PGEytQMAGRAGRRGlD~tGTVii~~~~~vp~~a~l~~li~ 735 (1248)
T KOG0947|consen 659 VLFATETFAMGVNMPARTVVFSSLRKHDGNEFRELLPGEYTQMAGRAGRRGLDETGTVIIMCKDSVPSAATLKRLIM 735 (1248)
T ss_pred EEeehhhhhhhcCCCceeEEeeehhhccCcceeecCChhHHhhhccccccccCcCceEEEEecCCCCCHHHHhhHhc
Confidence 999999999999999988777422 223678999999999999975 5555554432 3344555543
|
|
| >TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.3e-27 Score=279.21 Aligned_cols=168 Identities=22% Similarity=0.291 Sum_probs=135.3
Q ss_pred CCCccCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHH
Q psy15524 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKL 80 (930)
Q Consensus 1 ~g~~~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~ 80 (930)
+||+.||++|++||+.+++|+|+++++|||||||+||++|+++.+.. +++.++|||+||+||++|+.+.++++
T Consensus 32 ~g~~~p~~~Q~~ai~~il~G~nvvv~apTGSGKTla~~LPiL~~l~~-------~~~~~aL~l~PtraLa~q~~~~l~~l 104 (742)
T TIGR03817 32 AGIHRPWQHQARAAELAHAGRHVVVATGTASGKSLAYQLPVLSALAD-------DPRATALYLAPTKALAADQLRAVREL 104 (742)
T ss_pred cCCCcCCHHHHHHHHHHHCCCCEEEECCCCCcHHHHHHHHHHHHHhh-------CCCcEEEEEcChHHHHHHHHHHHHHh
Confidence 58999999999999999999999999999999999999999999865 23568999999999999999999998
Q ss_pred hhhcCCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcCC---CccCCCccEEEEcccccccccCcHHHHHHH
Q psy15524 81 CKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTE---TLKFSKVEHLVLDEADRILDQGYERDIAEF 157 (930)
Q Consensus 81 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~---~~~l~~l~~vViDE~h~~~~~~~~~~~~~i 157 (930)
. ...+.+..+.|+.. ..+...+..+++|+|+||+++...+.... ...++++++|||||+|.|.+ .|+..+..+
T Consensus 105 ~--~~~i~v~~~~Gdt~-~~~r~~i~~~~~IivtTPd~L~~~~L~~~~~~~~~l~~l~~vViDEah~~~g-~fg~~~~~i 180 (742)
T TIGR03817 105 T--LRGVRPATYDGDTP-TEERRWAREHARYVLTNPDMLHRGILPSHARWARFLRRLRYVVIDECHSYRG-VFGSHVALV 180 (742)
T ss_pred c--cCCeEEEEEeCCCC-HHHHHHHhcCCCEEEEChHHHHHhhccchhHHHHHHhcCCEEEEeChhhccC-ccHHHHHHH
Confidence 6 23366666666655 45556677789999999999975432211 12278999999999999976 488888887
Q ss_pred HHHHhh----cCCCceEEEEEeecCC
Q psy15524 158 LEILKK----QKPQFQSILLSATLTP 179 (930)
Q Consensus 158 ~~~l~~----~~~~~~~i~lSAT~~~ 179 (930)
+++++. .+.++|++++|||+++
T Consensus 181 l~rL~ri~~~~g~~~q~i~~SATi~n 206 (742)
T TIGR03817 181 LRRLRRLCARYGASPVFVLASATTAD 206 (742)
T ss_pred HHHHHHHHHhcCCCCEEEEEecCCCC
Confidence 777653 2345677777777765
|
A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA. |
| >KOG4284|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.1e-28 Score=260.16 Aligned_cols=245 Identities=27% Similarity=0.394 Sum_probs=208.8
Q ss_pred CCccCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHHh
Q psy15524 2 NITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLC 81 (930)
Q Consensus 2 g~~~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~ 81 (930)
||..||++|..|||.++.+.|+||+|..|+|||++|...+++.+.. +...++++|++||||++.|+.+.+.+++
T Consensus 44 ~f~~ptkiQaaAIP~~~~kmDliVQaKSGTGKTlVfsv~av~sl~~------~~~~~q~~Iv~PTREiaVQI~~tv~~v~ 117 (980)
T KOG4284|consen 44 AFALPTKIQAAAIPAIFSKMDLIVQAKSGTGKTLVFSVLAVESLDS------RSSHIQKVIVTPTREIAVQIKETVRKVA 117 (980)
T ss_pred cccCCCchhhhhhhhhhcccceEEEecCCCCceEEEEeeeehhcCc------ccCcceeEEEecchhhhhHHHHHHHHhc
Confidence 7889999999999999999999999999999999999999888754 3456789999999999999999999999
Q ss_pred hhcCCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEccccccccc-CcHHHHHHHHHH
Q psy15524 82 KSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQ-GYERDIAEFLEI 160 (930)
Q Consensus 82 ~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~-~~~~~~~~i~~~ 160 (930)
..+....++++.||.........+.. ++|+||||+|+..+... +.++.++++++|+||||.+.+. .|..++..|+..
T Consensus 118 ~sf~g~~csvfIGGT~~~~d~~rlk~-~rIvIGtPGRi~qL~el-~~~n~s~vrlfVLDEADkL~~t~sfq~~In~ii~s 195 (980)
T KOG4284|consen 118 PSFTGARCSVFIGGTAHKLDLIRLKQ-TRIVIGTPGRIAQLVEL-GAMNMSHVRLFVLDEADKLMDTESFQDDINIIINS 195 (980)
T ss_pred ccccCcceEEEecCchhhhhhhhhhh-ceEEecCchHHHHHHHh-cCCCccceeEEEeccHHhhhchhhHHHHHHHHHHh
Confidence 98888999999999988777666644 78999999999998875 8888999999999999999884 588888888877
Q ss_pred HhhcCCCceEEEEEeecCCCccccccccccccccccchhhhhhhhhhhccchhhHHHHHHHHhhcCcCceEEEEecccch
Q psy15524 161 LKKQKPQFQSILLSATLTPATCWCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLTP 240 (930)
Q Consensus 161 l~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~de~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~sat~~~ 240 (930)
++..+ |.+.||||.|.
T Consensus 196 lP~~r----------------------------------------------------------------Qv~a~SATYp~ 211 (980)
T KOG4284|consen 196 LPQIR----------------------------------------------------------------QVAAFSATYPR 211 (980)
T ss_pred cchhh----------------------------------------------------------------eeeEEeccCch
Confidence 76544 88888888888
Q ss_pred HHHHhhhccccCCeeeccCCcccccCCCcccccCCCceeEEEEcCcc--------hhHHHHHHHHhhhccccccCCcceE
Q psy15524 241 AVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPK--------LRLVALASFILGKCQNVNEDEESKM 312 (930)
Q Consensus 241 ~~~~l~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--------~k~~~l~~~l~~~~~~~~~~~~~~~ 312 (930)
....+...+|++|..++.+... ...-.|+|+|...+.. .|+..|-+++ ..-+..++
T Consensus 212 nLdn~Lsk~mrdp~lVr~n~~d---------~~L~GikQyv~~~~s~nnsveemrlklq~L~~vf-------~~ipy~QA 275 (980)
T KOG4284|consen 212 NLDNLLSKFMRDPALVRFNADD---------VQLFGIKQYVVAKCSPNNSVEEMRLKLQKLTHVF-------KSIPYVQA 275 (980)
T ss_pred hHHHHHHHHhcccceeecccCC---------ceeechhheeeeccCCcchHHHHHHHHHHHHHHH-------hhCchHHH
Confidence 8888888999999988776654 2234588888776542 3666666666 34566789
Q ss_pred EEEEecccchhhhHHHHhhhhh
Q psy15524 313 LVFMATQDMADYHTELLSTKKK 334 (930)
Q Consensus 313 iVF~~s~~~~~~l~~~L~~~~~ 334 (930)
||||+....|+-++..|+..|.
T Consensus 276 lVF~~~~sra~~~a~~L~ssG~ 297 (980)
T KOG4284|consen 276 LVFCDQISRAEPIATHLKSSGL 297 (980)
T ss_pred HhhhhhhhhhhHHHHHhhccCC
Confidence 9999999999999999998764
|
|
| >KOG0329|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.8e-28 Score=232.72 Aligned_cols=234 Identities=25% Similarity=0.421 Sum_probs=199.1
Q ss_pred CCccCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHHh
Q psy15524 2 NITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLC 81 (930)
Q Consensus 2 g~~~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~ 81 (930)
||++|+..|.+|||.+.-|.|++.+|.+|.|||.+|.++.++.+.. .++...+|+++.|||||-|+.+++.+++
T Consensus 61 gfehpsevqhecipqailgmdvlcqaksgmgktavfvl~tlqqiep------v~g~vsvlvmchtrelafqi~~ey~rfs 134 (387)
T KOG0329|consen 61 GFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEP------VDGQVSVLVMCHTRELAFQISKEYERFS 134 (387)
T ss_pred cCCCchHhhhhhhhHHhhcchhheecccCCCceeeeehhhhhhcCC------CCCeEEEEEEeccHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999998864 2345669999999999999999999999
Q ss_pred hhcCCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccC-cHHHHHHHHHH
Q psy15524 82 KSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQG-YERDIAEFLEI 160 (930)
Q Consensus 82 ~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~-~~~~~~~i~~~ 160 (930)
.+++.+++++.+||...+...+.+.+.|+|+||||++++.+.++ +.+.+++++.+|+||||.|+++- .+.+
T Consensus 135 kymP~vkvaVFfGG~~Ikkdee~lk~~PhivVgTPGrilALvr~-k~l~lk~vkhFvlDEcdkmle~lDMrRD------- 206 (387)
T KOG0329|consen 135 KYMPSVKVSVFFGGLFIKKDEELLKNCPHIVVGTPGRILALVRN-RSLNLKNVKHFVLDECDKMLEQLDMRRD------- 206 (387)
T ss_pred hhCCCceEEEEEcceeccccHHHHhCCCeEEEcCcHHHHHHHHh-ccCchhhcceeehhhHHHHHHHHHHHHH-------
Confidence 99999999999999999999999999999999999999988876 78899999999999999987642 2233
Q ss_pred HhhcCCCceEEEEEeecCCCccccccccccccccccchhhhhhhhhhhccchhhHHHHHHHHhhcCcCceEEEEecccch
Q psy15524 161 LKKQKPQFQSILLSATLTPATCWCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLTP 240 (930)
Q Consensus 161 l~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~de~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~sat~~~ 240 (930)
+.++.+..+..+ |+++||||++.
T Consensus 207 ------------------------------------------------------vQEifr~tp~~K---Qvmmfsatlsk 229 (387)
T KOG0329|consen 207 ------------------------------------------------------VQEIFRMTPHEK---QVMMFSATLSK 229 (387)
T ss_pred ------------------------------------------------------HHHHhhcCcccc---eeeeeeeecch
Confidence 333333333333 99999999999
Q ss_pred HHHHhhhccccCCeeeccCCcccccCCCcccccCCCceeEEEEcCcchhHHHHHHHHhhhccccccCCcceEEEEEeccc
Q psy15524 241 AVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQD 320 (930)
Q Consensus 241 ~~~~l~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~iVF~~s~~ 320 (930)
.+...++.++++|..+.+.+... ...-.+.|+|+...+..|...+..+|. .-...+++||+.+..
T Consensus 230 eiRpvC~kFmQdPmEi~vDdE~K--------LtLHGLqQ~YvkLke~eKNrkl~dLLd-------~LeFNQVvIFvKsv~ 294 (387)
T KOG0329|consen 230 EIRPVCHKFMQDPMEIFVDDEAK--------LTLHGLQQYYVKLKENEKNRKLNDLLD-------VLEFNQVVIFVKSVQ 294 (387)
T ss_pred hhHHHHHhhhcCchhhhccchhh--------hhhhhHHHHHHhhhhhhhhhhhhhhhh-------hhhhcceeEeeehhh
Confidence 99999999999999998877653 223458888888888888888888883 345678999999876
Q ss_pred c
Q psy15524 321 M 321 (930)
Q Consensus 321 ~ 321 (930)
.
T Consensus 295 R 295 (387)
T KOG0329|consen 295 R 295 (387)
T ss_pred h
Confidence 6
|
|
| >COG1201 Lhr Lhr-like helicases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=9.8e-27 Score=268.57 Aligned_cols=176 Identities=28% Similarity=0.350 Sum_probs=154.8
Q ss_pred CccCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHHhh
Q psy15524 3 ITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCK 82 (930)
Q Consensus 3 ~~~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~ 82 (930)
|.+|||.|.+|||.+.+|+|+|++||||||||+++++|+++.+.... .....++.++||++|.+||.+++.++++.++.
T Consensus 20 ~~~~t~~Q~~a~~~i~~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~-~~~~~~~i~~lYIsPLkALn~Di~~rL~~~~~ 98 (814)
T COG1201 20 FTSLTPPQRYAIPEIHSGENVLIIAPTGSGKTEAAFLPVINELLSLG-KGKLEDGIYALYISPLKALNNDIRRRLEEPLR 98 (814)
T ss_pred cCCCCHHHHHHHHHHhCCCceEEEcCCCCChHHHHHHHHHHHHHhcc-CCCCCCceEEEEeCcHHHHHHHHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999998863 22234689999999999999999999999999
Q ss_pred hcCCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcCCC-ccCCCccEEEEcccccccccCcHHHHHHHHHHH
Q psy15524 83 SFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTET-LKFSKVEHLVLDEADRILDQGYERDIAEFLEIL 161 (930)
Q Consensus 83 ~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~-~~l~~l~~vViDE~h~~~~~~~~~~~~~i~~~l 161 (930)
.++ +.+..-+|+....+......+.|||+|+|||.|.-++..... -.+.++++|||||+|.+.+..++.++..-+++|
T Consensus 99 ~~G-~~v~vRhGDT~~~er~r~~~~PPdILiTTPEsL~lll~~~~~r~~l~~vr~VIVDEiHel~~sKRG~~Lsl~LeRL 177 (814)
T COG1201 99 ELG-IEVAVRHGDTPQSEKQKMLKNPPHILITTPESLAILLNSPKFRELLRDVRYVIVDEIHALAESKRGVQLALSLERL 177 (814)
T ss_pred HcC-CccceecCCCChHHhhhccCCCCcEEEeChhHHHHHhcCHHHHHHhcCCcEEEeehhhhhhccccchhhhhhHHHH
Confidence 877 666777888877777777788899999999999887765322 228999999999999999999999999999999
Q ss_pred hhcCCCceEEEEEeecCCC
Q psy15524 162 KKQKPQFQSILLSATLTPA 180 (930)
Q Consensus 162 ~~~~~~~~~i~lSAT~~~~ 180 (930)
....+++|.||||||.++.
T Consensus 178 ~~l~~~~qRIGLSATV~~~ 196 (814)
T COG1201 178 RELAGDFQRIGLSATVGPP 196 (814)
T ss_pred HhhCcccEEEeehhccCCH
Confidence 9877799999999999863
|
|
| >PRK04914 ATP-dependent helicase HepA; Validated | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.6e-25 Score=267.05 Aligned_cols=345 Identities=20% Similarity=0.211 Sum_probs=214.4
Q ss_pred CCCHHHHHhHHhhhcC--CcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHHHHhhc
Q psy15524 414 QVTTVQQLSIQPILDG--GDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCK 491 (930)
Q Consensus 414 ~~~~iQ~~~i~~il~~--~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~ 491 (930)
.|.|+|..+...++.. ..+++...+|.|||+.+.+.+-+.+.. +...++|||||+ .|..||..++.+.+.
T Consensus 152 ~l~pHQl~~~~~vl~~~~~R~LLADEvGLGKTIeAglil~~l~~~-------g~~~rvLIVvP~-sL~~QW~~El~~kF~ 223 (956)
T PRK04914 152 SLIPHQLYIAHEVGRRHAPRVLLADEVGLGKTIEAGMIIHQQLLT-------GRAERVLILVPE-TLQHQWLVEMLRRFN 223 (956)
T ss_pred CCCHHHHHHHHHHhhccCCCEEEEeCCcCcHHHHHHHHHHHHHHc-------CCCCcEEEEcCH-HHHHHHHHHHHHHhC
Confidence 6899999998777654 359999999999999876665554443 334679999997 899999999976653
Q ss_pred cCCCcceEEEeCCCchHHHH---HHHhcCCcEEEECchhHHHhhhccCCcccccceEEEEecchhhhhcC-cHHHHHHHH
Q psy15524 492 SFTWIVPSWLTGGEKMKSEK---ARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQG-YERDIAEFL 567 (930)
Q Consensus 492 ~~~~~~~~~~~gg~~~~~~~---~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~l~~~g-~~~~l~~i~ 567 (930)
- ... +.++....... .......+++|+|.+.+...-.....+.-..++++|+||||++-... -.......+
T Consensus 224 l----~~~-i~~~~~~~~~~~~~~~pf~~~~~vI~S~~~l~~~~~~~~~l~~~~wdlvIvDEAH~lk~~~~~~s~~y~~v 298 (956)
T PRK04914 224 L----RFS-LFDEERYAEAQHDADNPFETEQLVICSLDFLRRNKQRLEQALAAEWDLLVVDEAHHLVWSEEAPSREYQVV 298 (956)
T ss_pred C----CeE-EEcCcchhhhcccccCccccCcEEEEEHHHhhhCHHHHHHHhhcCCCEEEEechhhhccCCCCcCHHHHHH
Confidence 1 112 22322211110 01112468999998876542111111223468999999999986211 111113333
Q ss_pred HHHhhcCccceEEEEccccCHH-HHH-HHhhhcCCCEEEE----------------------------------------
Q psy15524 568 EILKKQKPQFQSILLSATLTPA-VQR-LAGMTLQNPIQID---------------------------------------- 605 (930)
Q Consensus 568 ~~l~~~~~~~q~vl~SAT~~~~-~~~-l~~~~~~~~~~i~---------------------------------------- 605 (930)
..+... ...++++|||+-.. ..+ +....+-+|....
T Consensus 299 ~~La~~--~~~~LLLTATP~q~~~~e~falL~lLdP~~f~~~~~F~~e~~~~~~~a~~v~~l~~~~~~~~~~~~~l~~ll 376 (956)
T PRK04914 299 EQLAEV--IPGVLLLTATPEQLGQESHFARLRLLDPDRFHDYEAFVEEQQQYRPVADAVQALLAGEKLSDDALNALGELL 376 (956)
T ss_pred HHHhhc--cCCEEEEEcCcccCCcHHHHHhhhhhCCCcCCCHHHHHHHHHhhHHHHHHHHHHhcCCcCCHHHHHHHHHHh
Confidence 444321 34679999997420 000 0000000000000
Q ss_pred ----cc---------CCC-------------CcccC---------ccceecCCCceEEEEE-cC----------------
Q psy15524 606 ----AA---------DST-------------DIHNT---------TDSLVIPDSLKQHFIV-TP---------------- 633 (930)
Q Consensus 606 ----~~---------~~~-------------~~~~~---------~~~~~~~~~~~~~~~~-~~---------------- 633 (930)
.. ... +.+.. ......|....+.+.. .+
T Consensus 377 ~~~~~~~l~~~~~~~~~~~~~~~~~~i~~L~d~hg~~rvm~RntR~~v~~fp~R~~~~~~l~~~~~y~~~~~~~~~~~~~ 456 (956)
T PRK04914 377 GEQDIEPLLQAANSDSEEAQAARQELISELLDRHGTGRVLFRNTRAAVKGFPKRELHPIPLPLPEQYQTAIKVSLEARAR 456 (956)
T ss_pred cccchhHHHhhhcccccccHHHHHHHHHHHHhhcCcceEEEeccHHhhcCCCcCceeEeecCCCHHHHHHHHHhHHHHHH
Confidence 00 000 00000 0000011111111111 01
Q ss_pred --------------------chhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCC
Q psy15524 634 --------------------PKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGS 693 (930)
Q Consensus 634 --------------------~~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~ 693 (930)
.+.|...+..++... ...|+||||++++.+..+.+.|... .|+.+..+||+
T Consensus 457 ~~l~pe~~~~~~~~~~~~~~~d~Ki~~L~~~L~~~-------~~~KvLVF~~~~~t~~~L~~~L~~~--~Gi~~~~ihG~ 527 (956)
T PRK04914 457 DMLYPEQIYQEFEDNATWWNFDPRVEWLIDFLKSH-------RSEKVLVICAKAATALQLEQALRER--EGIRAAVFHEG 527 (956)
T ss_pred hhcCHHHHHHHHhhhhhccccCHHHHHHHHHHHhc-------CCCeEEEEeCcHHHHHHHHHHHhhc--cCeeEEEEECC
Confidence 112333344444321 2679999999999999999999543 37889999999
Q ss_pred CCHHHHHHHHHHhhcC--CCcEEEeccccccccCCCCccEEEEecCCCChhhHHhhhcccccCCCCceEEEEeCcccH--
Q psy15524 694 MSQSERTEVFKTFRSV--KSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPSEV-- 769 (930)
Q Consensus 694 ~~~~~R~~v~~~F~~~--~~~vLv~T~~~~~GlDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~e~-- 769 (930)
|++.+|..+++.|+++ ...|||||+++++|+|++.+++||+||+|.++..|+||+||++|.|+.|.+.+++...+.
T Consensus 528 ~s~~eR~~~~~~F~~~~~~~~VLIsTdvgseGlNlq~a~~VInfDlP~nP~~~eQRIGR~~RiGQ~~~V~i~~~~~~~t~ 607 (956)
T PRK04914 528 MSIIERDRAAAYFADEEDGAQVLLCSEIGSEGRNFQFASHLVLFDLPFNPDLLEQRIGRLDRIGQKHDIQIHVPYLEGTA 607 (956)
T ss_pred CCHHHHHHHHHHHhcCCCCccEEEechhhccCCCcccccEEEEecCCCCHHHHHHHhcccccCCCCceEEEEEccCCCCH
Confidence 9999999999999984 589999999999999999999999999999999999999999999999987776654332
Q ss_pred -HHHHHHHhcCCcc
Q psy15524 770 -KLVEELQNRRIRI 782 (930)
Q Consensus 770 -~~~~~l~~~~~~~ 782 (930)
..+..+...++.+
T Consensus 608 ~e~i~~~~~~~l~i 621 (956)
T PRK04914 608 QERLFRWYHEGLNA 621 (956)
T ss_pred HHHHHHHHhhhcCc
Confidence 3444444555543
|
|
| >KOG0327|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.3e-27 Score=244.64 Aligned_cols=243 Identities=28% Similarity=0.454 Sum_probs=207.4
Q ss_pred CCCccCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHH
Q psy15524 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKL 80 (930)
Q Consensus 1 ~g~~~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~ 80 (930)
.||+.|+.+|+.||..+..|.|+.+.+++|+|||.+|.+++++.+... ....++++++|+++|+.|+.+....+
T Consensus 44 yGFekPSaIQqraI~p~i~G~dv~~qaqsgTgKt~af~i~iLq~iD~~------~ke~qalilaPtreLa~qi~~v~~~l 117 (397)
T KOG0327|consen 44 YGFEKPSAIQQRAILPCIKGHDVIAQAQSGTGKTAAFLISILQQIDMS------VKETQALILAPTRELAQQIQKVVRAL 117 (397)
T ss_pred hccCCchHHHhccccccccCCceeEeeeccccchhhhHHHHHhhcCcc------hHHHHHHHhcchHHHHHHHHHHHHhh
Confidence 499999999999999999999999999999999999999999998542 23456999999999999999999998
Q ss_pred hhhcCCceeEEeeCCCchHHHHHHh-cCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCcHHHHHHHHH
Q psy15524 81 CKSFTWIVPSWLTGGEKMKSEKARI-RKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLE 159 (930)
Q Consensus 81 ~~~~~~~~~~~~~g~~~~~~~~~~l-~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~~~~~~~i~~ 159 (930)
+...+ ..+..+.||.....+...+ ...++|+++||+++.+++.. ..+..+.++++|+||+|.|+..||..++..++.
T Consensus 118 g~~~~-~~v~~~igg~~~~~~~~~i~~~~~hivvGTpgrV~dml~~-~~l~~~~iKmfvlDEaDEmLs~gfkdqI~~if~ 195 (397)
T KOG0327|consen 118 GDHMD-VSVHACIGGTNVRREDQALLKDKPHIVVGTPGRVFDMLNR-GSLSTDGIKMFVLDEADEMLSRGFKDQIYDIFQ 195 (397)
T ss_pred hcccc-eeeeeecCcccchhhhhhhhccCceeecCCchhHHHhhcc-ccccccceeEEeecchHhhhccchHHHHHHHHH
Confidence 87665 6666677777766554444 45699999999999999987 477788999999999999999999999998888
Q ss_pred HHhhcCCCceEEEEEeecCCCccccccccccccccccchhhhhhhhhhhccchhhHHHHHHHHhhcCcCceEEEEecccc
Q psy15524 160 ILKKQKPQFQSILLSATLTPATCWCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLT 239 (930)
Q Consensus 160 ~l~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~de~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~sat~~ 239 (930)
.++..- |.+++|||++
T Consensus 196 ~lp~~v----------------------------------------------------------------Qv~l~SAT~p 211 (397)
T KOG0327|consen 196 ELPSDV----------------------------------------------------------------QVVLLSATMP 211 (397)
T ss_pred HcCcch----------------------------------------------------------------hheeecccCc
Confidence 775432 8889999999
Q ss_pred hHHHHhhhccccCCeeeccCCcccccCCCcccccCCCceeEEEEcCcchhHHHHHHHHhhhccccccCCcceEEEEEecc
Q psy15524 240 PAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQ 319 (930)
Q Consensus 240 ~~~~~l~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~iVF~~s~ 319 (930)
..+....+.++++|+.+...... .....+.|+|+.+.++.|+..|..+. . .-.+.+|||||+
T Consensus 212 ~~vl~vt~~f~~~pv~i~vkk~~---------ltl~gikq~~i~v~k~~k~~~l~dl~-------~--~~~q~~if~nt~ 273 (397)
T KOG0327|consen 212 SDVLEVTKKFMREPVRILVKKDE---------LTLEGIKQFYINVEKEEKLDTLCDLY-------R--RVTQAVIFCNTR 273 (397)
T ss_pred HHHHHHHHHhccCceEEEecchh---------hhhhheeeeeeeccccccccHHHHHH-------H--hhhcceEEecch
Confidence 99999999999999988776544 23577999999998888999998888 2 457899999999
Q ss_pred cchhhhHHHHhhhh
Q psy15524 320 DMADYHTELLSTKK 333 (930)
Q Consensus 320 ~~~~~l~~~L~~~~ 333 (930)
+.+..+...|..++
T Consensus 274 r~v~~l~~~L~~~~ 287 (397)
T KOG0327|consen 274 RKVDNLTDKLRAHG 287 (397)
T ss_pred hhHHHHHHHHhhCC
Confidence 99999999996544
|
|
| >COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.7e-26 Score=258.47 Aligned_cols=297 Identities=22% Similarity=0.283 Sum_probs=199.1
Q ss_pred CCCCHHHHHhHHhhhc----CCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHHHH
Q psy15524 413 TQVTTVQQLSIQPILD----GGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTK 488 (930)
Q Consensus 413 ~~~~~iQ~~~i~~il~----~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~ 488 (930)
..++++|++++..+.. ++..++++|||+|||++++..+... +..+|||+||++|+.||.+.+..
T Consensus 35 ~~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~~~------------~~~~Lvlv~~~~L~~Qw~~~~~~ 102 (442)
T COG1061 35 FELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAEL------------KRSTLVLVPTKELLDQWAEALKK 102 (442)
T ss_pred CCCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHHHh------------cCCEEEEECcHHHHHHHHHHHHH
Confidence 4699999999999998 7889999999999999866555432 22299999999999999987777
Q ss_pred hhccCCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhccCCcccccceEEEEecchhhhhcCcHHHHHHHHH
Q psy15524 489 LCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLE 568 (930)
Q Consensus 489 ~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~l~~~g~~~~l~~i~~ 568 (930)
.+... ...+.+.|+..... . ..|.|+|...+.... ....+..+++.+||+||||++....+.. +.+
T Consensus 103 ~~~~~--~~~g~~~~~~~~~~------~-~~i~vat~qtl~~~~-~l~~~~~~~~~liI~DE~Hh~~a~~~~~----~~~ 168 (442)
T COG1061 103 FLLLN--DEIGIYGGGEKELE------P-AKVTVATVQTLARRQ-LLDEFLGNEFGLIIFDEVHHLPAPSYRR----ILE 168 (442)
T ss_pred hcCCc--cccceecCceeccC------C-CcEEEEEhHHHhhhh-hhhhhcccccCEEEEEccccCCcHHHHH----HHH
Confidence 66432 12343444432111 1 469999988776531 1122334579999999999998665433 333
Q ss_pred HHhhcCccce-EEEEccccCHHH----HHHHhhhcCCCEEEEccCCCCcccCccceecCCCceEEE--------------
Q psy15524 569 ILKKQKPQFQ-SILLSATLTPAV----QRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHF-------------- 629 (930)
Q Consensus 569 ~l~~~~~~~q-~vl~SAT~~~~~----~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-------------- 629 (930)
.+.. .. .+++|||++..- ..+.... .|........... ......|..+....
T Consensus 169 ~~~~----~~~~LGLTATp~R~D~~~~~~l~~~~--g~~vy~~~~~~li---~~g~Lap~~~~~i~~~~t~~~~~~~~~~ 239 (442)
T COG1061 169 LLSA----AYPRLGLTATPEREDGGRIGDLFDLI--GPIVYEVSLKELI---DEGYLAPYKYVEIKVTLTEDEEREYAKE 239 (442)
T ss_pred hhhc----ccceeeeccCceeecCCchhHHHHhc--CCeEeecCHHHHH---hCCCccceEEEEEEeccchHHHHHhhhh
Confidence 4432 22 899999976321 1111111 1222221111000 00000000000000
Q ss_pred ----------------------EEcCchhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCCceE
Q psy15524 630 ----------------------IVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAF 687 (930)
Q Consensus 630 ----------------------~~~~~~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~ 687 (930)
.......+...+...+..+. .+.+++||+++.++++.++..+..- +. +
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~lif~~~~~~a~~i~~~~~~~---~~-~ 309 (442)
T COG1061 240 SARFRELLRARGTLRAENEARRIAIASERKIAAVRGLLLKHA------RGDKTLIFASDVEHAYEIAKLFLAP---GI-V 309 (442)
T ss_pred hhhhhhhhhhhhhhhHHHHHHHHhhccHHHHHHHHHHHHHhc------CCCcEEEEeccHHHHHHHHHHhcCC---Cc-e
Confidence 00111122222222222211 2679999999999999999988763 44 6
Q ss_pred EEecCCCCHHHHHHHHHHhhcCCCcEEEeccccccccCCCCccEEEEecCCCChhhHHhhhcccccC
Q psy15524 688 FKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARV 754 (930)
Q Consensus 688 ~~lhg~~~~~~R~~v~~~F~~~~~~vLv~T~~~~~GlDip~v~~VI~~~~p~s~~~y~qr~GRagR~ 754 (930)
..+.|..++.+|..+++.|+.|...+||++.++.+|+|+|+++++|...+..|...|+||+||.-|.
T Consensus 310 ~~it~~t~~~eR~~il~~fr~g~~~~lv~~~vl~EGvDiP~~~~~i~~~~t~S~~~~~Q~lGR~LR~ 376 (442)
T COG1061 310 EAITGETPKEEREAILERFRTGGIKVLVTVKVLDEGVDIPDADVLIILRPTGSRRLFIQRLGRGLRP 376 (442)
T ss_pred EEEECCCCHHHHHHHHHHHHcCCCCEEEEeeeccceecCCCCcEEEEeCCCCcHHHHHHHhhhhccC
Confidence 6789999999999999999999999999999999999999999999999999999999999999993
|
|
| >KOG0948|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.4e-27 Score=254.58 Aligned_cols=335 Identities=20% Similarity=0.243 Sum_probs=245.3
Q ss_pred CCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHHHHhhccC
Q psy15524 414 QVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSF 493 (930)
Q Consensus 414 ~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~ 493 (930)
.+-|.|..+|..+-++..|+|.|.|.+|||.++..+|...+.. ..+++|-+|-++|..|-|+++..-+++
T Consensus 129 ~LDpFQ~~aI~Cidr~eSVLVSAHTSAGKTVVAeYAIA~sLr~---------kQRVIYTSPIKALSNQKYREl~~EF~D- 198 (1041)
T KOG0948|consen 129 TLDPFQSTAIKCIDRGESVLVSAHTSAGKTVVAEYAIAMSLRE---------KQRVIYTSPIKALSNQKYRELLEEFKD- 198 (1041)
T ss_pred ccCchHhhhhhhhcCCceEEEEeecCCCcchHHHHHHHHHHHh---------cCeEEeeChhhhhcchhHHHHHHHhcc-
Confidence 5789999999999999999999999999999999999888865 678999999999999999999887764
Q ss_pred CCcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhccCCcccccceEEEEecchhhhhcCcHHHHHHHHHHHhhc
Q psy15524 494 TWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQ 573 (930)
Q Consensus 494 ~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~l~~~g~~~~l~~i~~~l~~~ 573 (930)
+++.+|+...+ ..+.-+|+|.+.|-.++.+.. --++.+.|+|+||+|-|-|...+-.++.-+-.+++
T Consensus 199 ----VGLMTGDVTIn-------P~ASCLVMTTEILRsMLYRGS-EvmrEVaWVIFDEIHYMRDkERGVVWEETIIllP~- 265 (1041)
T KOG0948|consen 199 ----VGLMTGDVTIN-------PDASCLVMTTEILRSMLYRGS-EVMREVAWVIFDEIHYMRDKERGVVWEETIILLPD- 265 (1041)
T ss_pred ----cceeecceeeC-------CCCceeeeHHHHHHHHHhccc-hHhheeeeEEeeeehhccccccceeeeeeEEeccc-
Confidence 45667776543 356789999999999888743 44789999999999999887766666655555654
Q ss_pred CccceEEEEccccCHHHH--HHHhhhcCCCEEEEccCCCCcccCccceecCCCceEEEEEcCchhh-----HHHHHHHHH
Q psy15524 574 KPQFQSILLSATLTPAVQ--RLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLR-----LVALASFIL 646 (930)
Q Consensus 574 ~~~~q~vl~SAT~~~~~~--~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~l~~~l~ 646 (930)
+.+.+++|||+|++.+ +|....-+.|..+-..+. ...+.+.+..|..-...|.++..+.+ +....+.+.
T Consensus 266 --~vr~VFLSATiPNA~qFAeWI~~ihkQPcHVVYTdy--RPTPLQHyifP~ggdGlylvVDek~~FrednF~~am~~l~ 341 (1041)
T KOG0948|consen 266 --NVRFVFLSATIPNARQFAEWICHIHKQPCHVVYTDY--RPTPLQHYIFPAGGDGLYLVVDEKGKFREDNFQKAMSVLR 341 (1041)
T ss_pred --cceEEEEeccCCCHHHHHHHHHHHhcCCceEEeecC--CCCcceeeeecCCCCeeEEEEecccccchHHHHHHHHHhh
Confidence 8899999999998743 454444455655433222 12233445555555555666655422 222222332
Q ss_pred hhccCCC-------------------------------cCCCceEEEEecchhhHHHHHHHHhhh---------------
Q psy15524 647 GKCQNVN-------------------------------EDEESKMLVFMATQDMADYHTELLSTV--------------- 680 (930)
Q Consensus 647 ~~~~~~~-------------------------------~~~~~k~iVF~~s~~~~~~~~~~l~~~--------------- 680 (930)
....... .+...++|||+-+++.|+.++-.+.++
T Consensus 342 ~~~~~~~~~~~~~k~~kG~~~~~~~~~s~i~kiVkmi~~~~~~PVIvFSFSkkeCE~~Alqm~kldfN~deEk~~V~~iF 421 (1041)
T KOG0948|consen 342 KAGESDGKKKANKKGRKGGTGGKGPGDSDIYKIVKMIMERNYLPVIVFSFSKKECEAYALQMSKLDFNTDEEKELVETIF 421 (1041)
T ss_pred ccCCCccccccccccccCCcCCCCCCcccHHHHHHHHHhhcCCceEEEEecHhHHHHHHHhhccCcCCChhHHHHHHHHH
Confidence 2111110 001248999999999999887655443
Q ss_pred -----------------------cCCCceEEEecCCCCHHHHHHHHHHhhcCCCcEEEeccccccccCCCCccEEEE---
Q psy15524 681 -----------------------LGENIAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQ--- 734 (930)
Q Consensus 681 -----------------------~~~~~~~~~lhg~~~~~~R~~v~~~F~~~~~~vLv~T~~~~~GlDip~v~~VI~--- 734 (930)
+.+|++++ |+|+-+--++-++-.|.+|-+++|+||.+++.|+|.|+-++|+-
T Consensus 422 ~nAi~~LseeDr~LPqie~iLPLL~RGIGIH--HsGLLPIlKE~IEILFqEGLvKvLFATETFsiGLNMPAkTVvFT~~r 499 (1041)
T KOG0948|consen 422 NNAIDQLSEEDRELPQIENILPLLRRGIGIH--HSGLLPILKEVIEILFQEGLVKVLFATETFSIGLNMPAKTVVFTAVR 499 (1041)
T ss_pred HHHHHhcChhhccchHHHHHHHHHHhccccc--cccchHHHHHHHHHHHhccHHHHHHhhhhhhhccCCcceeEEEeecc
Confidence 11266665 99999999999999999999999999999999999999887763
Q ss_pred -ec----CCCChhhHHhhhcccccCCCC--ceEEEEeCcc-cHHHHHHHHh
Q psy15524 735 -YT----APSSSTDYVHRVGRTARVGHE--GSSLLFLIPS-EVKLVEELQN 777 (930)
Q Consensus 735 -~~----~p~s~~~y~qr~GRagR~g~~--g~~~~~~~~~-e~~~~~~l~~ 777 (930)
|| -.-+..+|+||.|||||.|.+ |.+++++... +....+.+.+
T Consensus 500 KfDG~~fRwissGEYIQMSGRAGRRG~DdrGivIlmiDekm~~~~ak~m~k 550 (1041)
T KOG0948|consen 500 KFDGKKFRWISSGEYIQMSGRAGRRGIDDRGIVILMIDEKMEPQVAKDMLK 550 (1041)
T ss_pred ccCCcceeeecccceEEecccccccCCCCCceEEEEecCcCCHHHHHHHhc
Confidence 22 223678999999999999985 7777777643 3334455544
|
|
| >COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.7e-26 Score=266.18 Aligned_cols=323 Identities=22% Similarity=0.266 Sum_probs=237.4
Q ss_pred cCCCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHHHH
Q psy15524 409 GMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTK 488 (930)
Q Consensus 409 ~~~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~ 488 (930)
.++| .+-++|++++-.+-.|..|+|+||||||||++...++...+.. |.+++|.+|.++|..|.++.+..
T Consensus 115 ~~~F-~LD~fQ~~a~~~Ler~esVlV~ApTssGKTvVaeyAi~~al~~---------~qrviYTsPIKALsNQKyrdl~~ 184 (1041)
T COG4581 115 EYPF-ELDPFQQEAIAILERGESVLVCAPTSSGKTVVAEYAIALALRD---------GQRVIYTSPIKALSNQKYRDLLA 184 (1041)
T ss_pred hCCC-CcCHHHHHHHHHHhCCCcEEEEccCCCCcchHHHHHHHHHHHc---------CCceEeccchhhhhhhHHHHHHH
Confidence 3566 6889999999999999999999999999999998888877754 66799999999999999999988
Q ss_pred hhccCCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhccCCcccccceEEEEecchhhhhcCcHHHHHHHHH
Q psy15524 489 LCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLE 568 (930)
Q Consensus 489 ~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~l~~~g~~~~l~~i~~ 568 (930)
.+... ....++++|+...+ .++.++|+|.+-|-+++.+. ...+..+.+||+||+|.|.|...+...+.++-
T Consensus 185 ~fgdv-~~~vGL~TGDv~IN-------~~A~clvMTTEILRnMlyrg-~~~~~~i~~ViFDEvHyi~D~eRG~VWEE~Ii 255 (1041)
T COG4581 185 KFGDV-ADMVGLMTGDVSIN-------PDAPCLVMTTEILRNMLYRG-SESLRDIEWVVFDEVHYIGDRERGVVWEEVII 255 (1041)
T ss_pred Hhhhh-hhhccceecceeeC-------CCCceEEeeHHHHHHHhccC-cccccccceEEEEeeeeccccccchhHHHHHH
Confidence 87755 34567788886653 46889999999998888774 55689999999999999999998888898888
Q ss_pred HHhhcCccceEEEEccccCHH--HHHHHhhhcCCCEEEEccCCCCcccCccceecCCCceEEEE-------EcCchhhH-
Q psy15524 569 ILKKQKPQFQSILLSATLTPA--VQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFI-------VTPPKLRL- 638 (930)
Q Consensus 569 ~l~~~~~~~q~vl~SAT~~~~--~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~- 638 (930)
.+++ ..|+++||||+|+. ...|....-..|..+...+.. |.++.+++. .+..+.++
T Consensus 256 ~lP~---~v~~v~LSATv~N~~EF~~Wi~~~~~~~~~vv~t~~R-----------pvPL~~~~~~~~~l~~lvde~~~~~ 321 (1041)
T COG4581 256 LLPD---HVRFVFLSATVPNAEEFAEWIQRVHSQPIHVVSTEHR-----------PVPLEHFVYVGKGLFDLVDEKKKFN 321 (1041)
T ss_pred hcCC---CCcEEEEeCCCCCHHHHHHHHHhccCCCeEEEeecCC-----------CCCeEEEEecCCceeeeecccccch
Confidence 8875 78999999999875 445555444445444332221 122222221 11111110
Q ss_pred -----HHHHHHHHh--hccC--------------------------------CCcCCCceEEEEecchhhHHHHHHHHhh
Q psy15524 639 -----VALASFILG--KCQN--------------------------------VNEDEESKMLVFMATQDMADYHTELLST 679 (930)
Q Consensus 639 -----~~l~~~l~~--~~~~--------------------------------~~~~~~~k~iVF~~s~~~~~~~~~~l~~ 679 (930)
.+...+... .... ......-++|+|+-+++.|+..+..+..
T Consensus 322 ~~~~~~a~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~iv~~l~~~~~lP~I~F~FSr~~Ce~~a~~~~~ 401 (1041)
T COG4581 322 AENFPSANRSLSCFSEKVRETDDGDVGRYARRTKALRGSAKGPAGRPEIVNKLDKDNLLPAIVFSFSRRGCEEAAQILST 401 (1041)
T ss_pred hhcchhhhhhhhccchhccccCccccccccccccccCCcccccccchHHHhhhhhhcCCceEEEEEchhhHHHHHHHhcc
Confidence 000111100 0000 0001245899999999999877655431
Q ss_pred h----------------------------------------cCCCceEEEecCCCCHHHHHHHHHHhhcCCCcEEEeccc
Q psy15524 680 V----------------------------------------LGENIAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTDV 719 (930)
Q Consensus 680 ~----------------------------------------~~~~~~~~~lhg~~~~~~R~~v~~~F~~~~~~vLv~T~~ 719 (930)
+ +.+|+. .+|++|-+..|..+...|..|-.+|+++|.+
T Consensus 402 ldl~~~~~~e~~i~~ii~~~i~~L~~ed~~lp~~~~~~~~~L~RGia--vHH~GlLP~~K~~vE~Lfq~GLvkvvFaTeT 479 (1041)
T COG4581 402 LDLVLTEEKERAIREIIDHAIGDLAEEDRELPLQILEISALLLRGIA--VHHAGLLPAIKELVEELFQEGLVKVVFATET 479 (1041)
T ss_pred cccccCCcHHHHHHHHHHHHHhhcChhhhcCcccHHHHHHHHhhhhh--hhccccchHHHHHHHHHHhccceeEEeehhh
Confidence 1 112555 4599999999999999999999999999999
Q ss_pred cccccCCCCccEEEE----ec----CCCChhhHHhhhcccccCCCC--ceEEEEeCc
Q psy15524 720 AARGLDLPLVDWIVQ----YT----APSSSTDYVHRVGRTARVGHE--GSSLLFLIP 766 (930)
Q Consensus 720 ~~~GlDip~v~~VI~----~~----~p~s~~~y~qr~GRagR~g~~--g~~~~~~~~ 766 (930)
++.|+|.|.-++|+- +| .+.++.+|.|+.|||||.|-+ |.++++-.+
T Consensus 480 ~s~GiNmPartvv~~~l~K~dG~~~r~L~~gEy~QmsGRAGRRGlD~~G~vI~~~~~ 536 (1041)
T COG4581 480 FAIGINMPARTVVFTSLSKFDGNGHRWLSPGEYTQMSGRAGRRGLDVLGTVIVIEPP 536 (1041)
T ss_pred hhhhcCCcccceeeeeeEEecCCceeecChhHHHHhhhhhccccccccceEEEecCC
Confidence 999999998887762 22 445889999999999999985 666665443
|
|
| >PRK13767 ATP-dependent helicase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.8e-26 Score=275.42 Aligned_cols=178 Identities=26% Similarity=0.325 Sum_probs=146.6
Q ss_pred CCccCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHHh
Q psy15524 2 NITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLC 81 (930)
Q Consensus 2 g~~~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~ 81 (930)
||..|||+|++||+.+++|+|++++||||||||++|++|+++.+..........++.++||++|+++|++|+++.+....
T Consensus 29 ~~~~~tpiQ~~Ai~~il~g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~~~~~~~~LyIsPtraLa~di~~~L~~~l 108 (876)
T PRK13767 29 KFGTFTPPQRYAIPLIHEGKNVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCLYVSPLRALNNDIHRNLEEPL 108 (876)
T ss_pred ccCCCCHHHHHHHHHHHcCCCEEEECCCCCcHHHHHHHHHHHHHHhhccccCCCCCeEEEEEcCHHHHHHHHHHHHHHHH
Confidence 57889999999999999999999999999999999999999998753322222357889999999999999998766422
Q ss_pred -----------hhcCCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcCCC-ccCCCccEEEEcccccccccC
Q psy15524 82 -----------KSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTET-LKFSKVEHLVLDEADRILDQG 149 (930)
Q Consensus 82 -----------~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~-~~l~~l~~vViDE~h~~~~~~ 149 (930)
...+.+.+....|+.........+...++|+|+|||++..++.+... -.++++++|||||+|.+.+..
T Consensus 109 ~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~~~p~IlVtTPE~L~~ll~~~~~~~~l~~l~~VVIDE~H~l~~~~ 188 (876)
T PRK13767 109 TEIREIAKERGEELPEIRVAIRTGDTSSYEKQKMLKKPPHILITTPESLAILLNSPKFREKLRTVKWVIVDEIHSLAENK 188 (876)
T ss_pred HHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHhCCCCEEEecHHHHHHHhcChhHHHHHhcCCEEEEechhhhccCc
Confidence 12224677888888887777777778899999999999877754322 137899999999999999999
Q ss_pred cHHHHHHHHHHHhhcC-CCceEEEEEeecCC
Q psy15524 150 YERDIAEFLEILKKQK-PQFQSILLSATLTP 179 (930)
Q Consensus 150 ~~~~~~~i~~~l~~~~-~~~~~i~lSAT~~~ 179 (930)
++..+...+.++.... +.+|++++|||+++
T Consensus 189 RG~~l~~~L~rL~~l~~~~~q~IglSATl~~ 219 (876)
T PRK13767 189 RGVHLSLSLERLEELAGGEFVRIGLSATIEP 219 (876)
T ss_pred cHHHHHHHHHHHHHhcCCCCeEEEEecccCC
Confidence 9998888888887654 67899999999976
|
|
| >PRK12900 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.7e-25 Score=255.47 Aligned_cols=131 Identities=21% Similarity=0.237 Sum_probs=114.1
Q ss_pred EEcCchhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHHHHHHHHHHhhcC
Q psy15524 630 IVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSV 709 (930)
Q Consensus 630 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~v~~~F~~~ 709 (930)
+......|..++...+..... .+.++||||+|++.++.++++|... ++.+..+|+ .+.+|+..+.+|+.+
T Consensus 576 vy~t~~eK~~Ali~~I~~~~~-----~grpVLIft~Sve~sE~Ls~~L~~~---gI~h~vLna--kq~~REa~Iia~AG~ 645 (1025)
T PRK12900 576 VYKTRREKYNAIVLKVEELQK-----KGQPVLVGTASVEVSETLSRMLRAK---RIAHNVLNA--KQHDREAEIVAEAGQ 645 (1025)
T ss_pred EecCHHHHHHHHHHHHHHHhh-----CCCCEEEEeCcHHHHHHHHHHHHHc---CCCceeecC--CHHHhHHHHHHhcCC
Confidence 345556788888888865432 2789999999999999999999875 888889997 688999999999999
Q ss_pred CCcEEEeccccccccCCC---Ccc-----EEEEecCCCChhhHHhhhcccccCCCCceEEEEeCcccHH
Q psy15524 710 KSGVLICTDVAARGLDLP---LVD-----WIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPSEVK 770 (930)
Q Consensus 710 ~~~vLv~T~~~~~GlDip---~v~-----~VI~~~~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~e~~ 770 (930)
...|+|||++|+||+||+ +|. +||+++.|.|...|.||+|||||.|.+|.+..|++.++.-
T Consensus 646 ~g~VtIATNMAGRGtDIkl~~~V~~vGGL~VIgterhes~Rid~Ql~GRtGRqGdpGsS~ffvSleD~L 714 (1025)
T PRK12900 646 KGAVTIATNMAGRGTDIKLGEGVRELGGLFILGSERHESRRIDRQLRGRAGRQGDPGESVFYVSLEDEL 714 (1025)
T ss_pred CCeEEEeccCcCCCCCcCCccchhhhCCceeeCCCCCchHHHHHHHhhhhhcCCCCcceEEEechhHHH
Confidence 999999999999999998 564 4599999999999999999999999999999999986653
|
|
| >COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.4e-24 Score=251.68 Aligned_cols=325 Identities=20% Similarity=0.242 Sum_probs=245.8
Q ss_pred CCCHHHHHHHHhcCCCCCCCHHHHHhHHhhhc----C--CcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEE
Q psy15524 397 GIHPFMKKNLNEGMNITQVTTVQQLSIQPILD----G--GDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAV 470 (930)
Q Consensus 397 ~l~~~~~~~l~~~~~~~~~~~iQ~~~i~~il~----~--~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~l 470 (930)
..+......+.+.|+| .-||-|..||..+.. + -|-++|+--|-|||-+++=+++..+. +|+.|.
T Consensus 578 ~~d~~~q~~F~~~FPy-eET~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV~---------~GKQVA 647 (1139)
T COG1197 578 PPDTEWQEEFEASFPY-EETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAVM---------DGKQVA 647 (1139)
T ss_pred CCChHHHHHHHhcCCC-cCCHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHHhc---------CCCeEE
Confidence 3455666777777787 469999999999885 2 48899999999999999989887775 489999
Q ss_pred EEccCHHHHHHHHHHHHHhhccCCCcceEEEeCCCchHHH---HHHHhc-CCcEEEECchhHHHhhhccCCcccccceEE
Q psy15524 471 IILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSE---KARIRK-GISILVATPGRLLDHCKHTETLKFSKVEHL 546 (930)
Q Consensus 471 il~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~---~~~~~~-~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~l 546 (930)
|+|||.-||+|.++.|++.+..++.. +..+..-.+.+.+ ...+.. ..||||+|.- ++ .+.+.++++.++
T Consensus 648 vLVPTTlLA~QHy~tFkeRF~~fPV~-I~~LSRF~s~kE~~~il~~la~G~vDIvIGTHr----LL--~kdv~FkdLGLl 720 (1139)
T COG1197 648 VLVPTTLLAQQHYETFKERFAGFPVR-IEVLSRFRSAKEQKEILKGLAEGKVDIVIGTHR----LL--SKDVKFKDLGLL 720 (1139)
T ss_pred EEcccHHhHHHHHHHHHHHhcCCCee-EEEecccCCHHHHHHHHHHHhcCCccEEEechH----hh--CCCcEEecCCeE
Confidence 99999999999999999999988753 3444444333333 333443 4899999952 22 256789999999
Q ss_pred EEecchhhhhcCcHHHHHHHHHHHhhcCccceEEEEccccCHHHHHHHhhhcCCCEEEEccCCCCcccCccceecCCCce
Q psy15524 547 VLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLK 626 (930)
Q Consensus 547 VlDEah~l~~~g~~~~l~~i~~~l~~~~~~~q~vl~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 626 (930)
||||-||+.-.. -+.++..+.+.-++-+|||+-+..-.++-..+++-..|.+.+... -.+.
T Consensus 721 IIDEEqRFGVk~--------KEkLK~Lr~~VDvLTLSATPIPRTL~Msm~GiRdlSvI~TPP~~R-----------~pV~ 781 (1139)
T COG1197 721 IIDEEQRFGVKH--------KEKLKELRANVDVLTLSATPIPRTLNMSLSGIRDLSVIATPPEDR-----------LPVK 781 (1139)
T ss_pred EEechhhcCccH--------HHHHHHHhccCcEEEeeCCCCcchHHHHHhcchhhhhccCCCCCC-----------cceE
Confidence 999999875322 123333345888999999998887777777777655554433211 1122
Q ss_pred EEEEEcCchhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHHHHHHHHHHh
Q psy15524 627 QHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTF 706 (930)
Q Consensus 627 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~v~~~F 706 (930)
.++....+..-..++...+. .++++...+|..+..+..++.|+++.+ ...+...||.|+..+-+.++.+|
T Consensus 782 T~V~~~d~~~ireAI~REl~---------RgGQvfYv~NrV~~Ie~~~~~L~~LVP-EarI~vaHGQM~e~eLE~vM~~F 851 (1139)
T COG1197 782 TFVSEYDDLLIREAILRELL---------RGGQVFYVHNRVESIEKKAERLRELVP-EARIAVAHGQMRERELEEVMLDF 851 (1139)
T ss_pred EEEecCChHHHHHHHHHHHh---------cCCEEEEEecchhhHHHHHHHHHHhCC-ceEEEEeecCCCHHHHHHHHHHH
Confidence 22222222222222222222 278999999999999999999998876 46677789999999999999999
Q ss_pred hcCCCcEEEeccccccccCCCCccEEEEecCC-CChhhHHhhhcccccCCCCceEEEEeCcc
Q psy15524 707 RSVKSGVLICTDVAARGLDLPLVDWIVQYTAP-SSSTDYVHRVGRTARVGHEGSSLLFLIPS 767 (930)
Q Consensus 707 ~~~~~~vLv~T~~~~~GlDip~v~~VI~~~~p-~s~~~y~qr~GRagR~g~~g~~~~~~~~~ 767 (930)
-+|+.+|||||.+.+.|||+|+++.+|..+.. .-.++..|..||.||.++.+.|++++.+.
T Consensus 852 ~~g~~dVLv~TTIIEtGIDIPnANTiIIe~AD~fGLsQLyQLRGRVGRS~~~AYAYfl~p~~ 913 (1139)
T COG1197 852 YNGEYDVLVCTTIIETGIDIPNANTIIIERADKFGLAQLYQLRGRVGRSNKQAYAYFLYPPQ 913 (1139)
T ss_pred HcCCCCEEEEeeeeecCcCCCCCceEEEeccccccHHHHHHhccccCCccceEEEEEeecCc
Confidence 99999999999999999999999988876654 46889999999999999999999999863
|
|
| >KOG0950|consensus | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.7e-25 Score=249.86 Aligned_cols=356 Identities=20% Similarity=0.243 Sum_probs=247.3
Q ss_pred CCCHHHHHHHHhcCCCCCCCHHHHHhH--HhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEcc
Q psy15524 397 GIHPFMKKNLNEGMNITQVTTVQQLSI--QPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILP 474 (930)
Q Consensus 397 ~l~~~~~~~l~~~~~~~~~~~iQ~~~i--~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~P 474 (930)
.+++-..+...+..|...+..||..++ |.++.+++.+..+||+.|||+++.+-++..+... ...++.+.|
T Consensus 206 ~~~~k~~~~~~~~kgi~~~fewq~ecls~~~~~e~~nliys~Pts~gktlvaeilml~~~l~~--------rr~~llilp 277 (1008)
T KOG0950|consen 206 RLPTKVSHLYAKDKGILKLFEWQAECLSLPRLLERKNLIYSLPTSAGKTLVAEILMLREVLCR--------RRNVLLILP 277 (1008)
T ss_pred cCchHHHHHHHHhhhHHHHHHHHHHHhcchhhhcccceEEeCCCccchHHHHHHHHHHHHHHH--------hhceeEecc
Confidence 466666666666789999999999986 6788999999999999999999999999887753 445899999
Q ss_pred CHHHHHHHHHHHHHhhccCCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhcc-CCcccccceEEEEecchh
Q psy15524 475 TRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHT-ETLKFSKVEHLVLDEADR 553 (930)
Q Consensus 475 treLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~-~~~~~~~l~~lVlDEah~ 553 (930)
....+..-...+..+....+..+-++. |...... .++.-++.|||-++-..+.... ..-.+..+.+||+||.|.
T Consensus 278 ~vsiv~Ek~~~l~~~~~~~G~~ve~y~-g~~~p~~----~~k~~sv~i~tiEkanslin~lie~g~~~~~g~vvVdElhm 352 (1008)
T KOG0950|consen 278 YVSIVQEKISALSPFSIDLGFPVEEYA-GRFPPEK----RRKRESVAIATIEKANSLINSLIEQGRLDFLGMVVVDELHM 352 (1008)
T ss_pred eeehhHHHHhhhhhhccccCCcchhhc-ccCCCCC----cccceeeeeeehHhhHhHHHHHHhcCCccccCcEEEeeeee
Confidence 998888888888888877776554433 4433221 2345689999999865444321 122467899999999999
Q ss_pred hhhcCcHHHHHHHHHHHhhc--CccceEEEEccccCHH--HHHHHhhhcCCCEEEEccCCCCcccCccceecCCCceEEE
Q psy15524 554 ILDQGYERDIAEFLEILKKQ--KPQFQSILLSATLTPA--VQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHF 629 (930)
Q Consensus 554 l~~~g~~~~l~~i~~~l~~~--~~~~q~vl~SAT~~~~--~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 629 (930)
+.+.+.+..++.++..+--. ....|+|++|||+++. ++.|.. ..++..-..... ..+ +..+..
T Consensus 353 i~d~~rg~~lE~~l~k~~y~~~~~~~~iIGMSATi~N~~lL~~~L~----A~~y~t~fRPv~---L~E-~ik~G~----- 419 (1008)
T KOG0950|consen 353 IGDKGRGAILELLLAKILYENLETSVQIIGMSATIPNNSLLQDWLD----AFVYTTRFRPVP---LKE-YIKPGS----- 419 (1008)
T ss_pred eeccccchHHHHHHHHHHHhccccceeEeeeecccCChHHHHHHhh----hhheecccCccc---chh-ccCCCc-----
Confidence 99999999988888765422 2347799999999873 334433 222211100000 000 000000
Q ss_pred EEcCchhhHHHHHHHHH---hhccCCC-----------cCCCceEEEEecchhhHHHHHHHHhhhcCC------------
Q psy15524 630 IVTPPKLRLVALASFIL---GKCQNVN-----------EDEESKMLVFMATQDMADYHTELLSTVLGE------------ 683 (930)
Q Consensus 630 ~~~~~~~~~~~l~~~l~---~~~~~~~-----------~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~------------ 683 (930)
...... +...+..+-. ......+ -..+..+||||+++..++.++..+....+.
T Consensus 420 ~i~~~~-r~~~lr~ia~l~~~~~g~~dpD~~v~L~tet~~e~~~~lvfc~sk~~ce~~a~~~~~~vpk~~~~e~~~~~~~ 498 (1008)
T KOG0950|consen 420 LIYESS-RNKVLREIANLYSSNLGDEDPDHLVGLCTETAPEGSSVLVFCPSKKNCENVASLIAKKVPKHIKSEKRLGLWE 498 (1008)
T ss_pred ccccch-hhHHHHHhhhhhhhhcccCCCcceeeehhhhhhcCCeEEEEcCcccchHHHHHHHHHHhhHhhhhhhhhhHHH
Confidence 000000 1111111110 0000000 012567999999999998877555332111
Q ss_pred -----------------------CceEEEecCCCCHHHHHHHHHHhhcCCCcEEEeccccccccCCCCccEEEEec----
Q psy15524 684 -----------------------NIAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYT---- 736 (930)
Q Consensus 684 -----------------------~~~~~~lhg~~~~~~R~~v~~~F~~~~~~vLv~T~~~~~GlDip~v~~VI~~~---- 736 (930)
...+..+|++++.++|..+...|++|...|++||++++.|+++|+.+++|-.-
T Consensus 499 ~~s~s~~lr~~~~~ld~Vl~~ti~~GvAyHhaGLT~eER~~iE~afr~g~i~vl~aTSTlaaGVNLPArRVIiraP~~g~ 578 (1008)
T KOG0950|consen 499 LLSISNLLRRIPGILDPVLAKTIPYGVAYHHAGLTSEEREIIEAAFREGNIFVLVATSTLAAGVNLPARRVIIRAPYVGR 578 (1008)
T ss_pred HHHHHhHhhcCCcccchHHheeccccceecccccccchHHHHHHHHHhcCeEEEEecchhhccCcCCcceeEEeCCcccc
Confidence 23345569999999999999999999999999999999999999999988643
Q ss_pred CCCChhhHHhhhcccccCCC--CceEEEEeCcccHHHHHHHHhcC
Q psy15524 737 APSSSTDYVHRVGRTARVGH--EGSSLLFLIPSEVKLVEELQNRR 779 (930)
Q Consensus 737 ~p~s~~~y~qr~GRagR~g~--~g~~~~~~~~~e~~~~~~l~~~~ 779 (930)
...+..+|.||+|||||+|- .|.+++++.+.|...+..+....
T Consensus 579 ~~l~~~~YkQM~GRAGR~gidT~GdsiLI~k~~e~~~~~~lv~~~ 623 (1008)
T KOG0950|consen 579 EFLTRLEYKQMVGRAGRTGIDTLGDSILIIKSSEKKRVRELVNSP 623 (1008)
T ss_pred chhhhhhHHhhhhhhhhcccccCcceEEEeeccchhHHHHHHhcc
Confidence 34578899999999999987 48999999999988776776543
|
|
| >TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.9e-25 Score=253.40 Aligned_cols=161 Identities=24% Similarity=0.350 Sum_probs=123.6
Q ss_pred CCCccCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHH
Q psy15524 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKL 80 (930)
Q Consensus 1 ~g~~~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~ 80 (930)
|||+.|+|+|+++|+++++|+|+++++|||+|||++|++|++.. +..+||++|+++|+.|+++.++..
T Consensus 7 ~g~~~~r~~Q~~ai~~~l~g~dvlv~apTGsGKTl~y~lp~l~~------------~~~~lVi~P~~~L~~dq~~~l~~~ 74 (470)
T TIGR00614 7 FGLSSFRPVQLEVINAVLLGRDCFVVMPTGGGKSLCYQLPALCS------------DGITLVISPLISLMEDQVLQLKAS 74 (470)
T ss_pred cCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHhHHHHHHHHHc------------CCcEEEEecHHHHHHHHHHHHHHc
Confidence 69999999999999999999999999999999999999998742 235999999999999999998765
Q ss_pred hhhcCCceeEEeeCCCchHHHHH---H-hcCCCcEEEEChHHHHHHHhcCCCc-cCCCccEEEEcccccccccC--cHHH
Q psy15524 81 CKSFTWIVPSWLTGGEKMKSEKA---R-IRKGISILVATPGRLLDHCKHTETL-KFSKVEHLVLDEADRILDQG--YERD 153 (930)
Q Consensus 81 ~~~~~~~~~~~~~g~~~~~~~~~---~-l~~~~~Ilv~Tp~~l~~~l~~~~~~-~l~~l~~vViDE~h~~~~~~--~~~~ 153 (930)
+ +....+.++........ . ....++|+++||+++.........+ ...++++|||||||++++|| |++.
T Consensus 75 g-----i~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iViDEaH~i~~~g~~fr~~ 149 (470)
T TIGR00614 75 G-----IPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITLIAVDEAHCISQWGHDFRPD 149 (470)
T ss_pred C-----CcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCEEEEeCCcccCccccccHHH
Confidence 3 44555666655443222 2 2345899999999975422110112 46789999999999999998 6777
Q ss_pred HHHHHHHHhhcCCCceEEEEEeecCC
Q psy15524 154 IAEFLEILKKQKPQFQSILLSATLTP 179 (930)
Q Consensus 154 ~~~i~~~l~~~~~~~~~i~lSAT~~~ 179 (930)
+..+.. +....+++++++||||+++
T Consensus 150 ~~~l~~-l~~~~~~~~~l~lTAT~~~ 174 (470)
T TIGR00614 150 YKALGS-LKQKFPNVPIMALTATASP 174 (470)
T ss_pred HHHHHH-HHHHcCCCceEEEecCCCH
Confidence 765543 4444567889999999864
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PRK02362 ski2-like helicase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.8e-25 Score=266.03 Aligned_cols=164 Identities=24% Similarity=0.334 Sum_probs=140.7
Q ss_pred CCCccCcHHHHHHHHH-hhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHH
Q psy15524 1 MNITQVTTVQQLSIQP-ILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTK 79 (930)
Q Consensus 1 ~g~~~l~~~Q~~ai~~-~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~ 79 (930)
.||++|+|+|.+|++. +.+|+|++++||||||||++|.+|+++.+.. +.++||++|+++|+.|+++.+++
T Consensus 19 ~g~~~l~p~Q~~ai~~~~~~g~nvlv~APTGSGKTlia~lail~~l~~---------~~kal~i~P~raLa~q~~~~~~~ 89 (737)
T PRK02362 19 EGIEELYPPQAEAVEAGLLDGKNLLAAIPTASGKTLIAELAMLKAIAR---------GGKALYIVPLRALASEKFEEFER 89 (737)
T ss_pred CCCCcCCHHHHHHHHHHHhCCCcEEEECCCcchHHHHHHHHHHHHHhc---------CCcEEEEeChHHHHHHHHHHHHH
Confidence 4899999999999998 7789999999999999999999999998853 45799999999999999999997
Q ss_pred HhhhcCCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCcHHHHHHHHH
Q psy15524 80 LCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLE 159 (930)
Q Consensus 80 ~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~~~~~~~i~~ 159 (930)
+.. .+ ..+..++|+...... ....++|+|+|||++..++++ ....++++++|||||+|.+.+.++++.++.++.
T Consensus 90 ~~~-~g-~~v~~~tGd~~~~~~---~l~~~~IiV~Tpek~~~llr~-~~~~l~~v~lvViDE~H~l~d~~rg~~le~il~ 163 (737)
T PRK02362 90 FEE-LG-VRVGISTGDYDSRDE---WLGDNDIIVATSEKVDSLLRN-GAPWLDDITCVVVDEVHLIDSANRGPTLEVTLA 163 (737)
T ss_pred hhc-CC-CEEEEEeCCcCcccc---ccCCCCEEEECHHHHHHHHhc-ChhhhhhcCEEEEECccccCCCcchHHHHHHHH
Confidence 643 33 667777777643321 224589999999999888775 334578999999999999999999999999999
Q ss_pred HHhhcCCCceEEEEEeecCC
Q psy15524 160 ILKKQKPQFQSILLSATLTP 179 (930)
Q Consensus 160 ~l~~~~~~~~~i~lSAT~~~ 179 (930)
+++...+++|++++|||+++
T Consensus 164 rl~~~~~~~qii~lSATl~n 183 (737)
T PRK02362 164 KLRRLNPDLQVVALSATIGN 183 (737)
T ss_pred HHHhcCCCCcEEEEcccCCC
Confidence 99988888999999999976
|
|
| >PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=7.6e-25 Score=257.61 Aligned_cols=161 Identities=24% Similarity=0.326 Sum_probs=125.5
Q ss_pred CCCccCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHH
Q psy15524 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKL 80 (930)
Q Consensus 1 ~g~~~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~ 80 (930)
|||..++|.|+++|++++.|+|+++++|||+|||+||++|++.. ++.+|||+|+++|+.+|...+...
T Consensus 456 FG~~sFRp~Q~eaI~aiL~GrDVLVimPTGSGKSLcYQLPAL~~------------~GiTLVISPLiSLmqDQV~~L~~~ 523 (1195)
T PLN03137 456 FGNHSFRPNQREIINATMSGYDVFVLMPTGGGKSLTYQLPALIC------------PGITLVISPLVSLIQDQIMNLLQA 523 (1195)
T ss_pred cCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHHHHHHHHHHHc------------CCcEEEEeCHHHHHHHHHHHHHhC
Confidence 69999999999999999999999999999999999999999853 245999999999999888777653
Q ss_pred hhhcCCceeEEeeCCCchHHHHHHhc------CCCcEEEEChHHHHH---HHhcCC-CccCCCccEEEEcccccccccC-
Q psy15524 81 CKSFTWIVPSWLTGGEKMKSEKARIR------KGISILVATPGRLLD---HCKHTE-TLKFSKVEHLVLDEADRILDQG- 149 (930)
Q Consensus 81 ~~~~~~~~~~~~~g~~~~~~~~~~l~------~~~~Ilv~Tp~~l~~---~l~~~~-~~~l~~l~~vViDE~h~~~~~~- 149 (930)
+ +....+.++....++...+. ..++|||+|||+|.. ++.... ......+.+|||||||++++||
T Consensus 524 G-----I~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~~~~LslIVIDEAHcVSqWGh 598 (1195)
T PLN03137 524 N-----IPAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLENLNSRGLLARFVIDEAHCVSQWGH 598 (1195)
T ss_pred C-----CeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHhhhhccccceeccCcchhhhhccc
Confidence 2 56677788877665554433 458999999999853 121111 1123568999999999999998
Q ss_pred -cHHHHHHHHHHHhhcCCCceEEEEEeecCC
Q psy15524 150 -YERDIAEFLEILKKQKPQFQSILLSATLTP 179 (930)
Q Consensus 150 -~~~~~~~i~~~l~~~~~~~~~i~lSAT~~~ 179 (930)
|++++..+ ..+....+++++++||||+++
T Consensus 599 DFRpdYr~L-~~Lr~~fp~vPilALTATAT~ 628 (1195)
T PLN03137 599 DFRPDYQGL-GILKQKFPNIPVLALTATATA 628 (1195)
T ss_pred chHHHHHHH-HHHHHhCCCCCeEEEEecCCH
Confidence 88887764 334444567788899999865
|
|
| >KOG0332|consensus | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.1e-26 Score=229.64 Aligned_cols=243 Identities=24% Similarity=0.343 Sum_probs=193.1
Q ss_pred CCCccCcHHHHHHHHHhhcC--CcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHH
Q psy15524 1 MNITQVTTVQQLSIQPILDG--GDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFT 78 (930)
Q Consensus 1 ~g~~~l~~~Q~~ai~~~~~g--~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~ 78 (930)
|||..|+.+|+.|+|.++.. +|++.++..|+|||.||.+.+|.++.. ....++++.|+||++||.|+.+.+.
T Consensus 108 M~F~kPskIQe~aLPlll~~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd~------~~~~PQ~iCLaPtrELA~Q~~eVv~ 181 (477)
T KOG0332|consen 108 MKFQKPSKIQETALPLLLAEPPQNLIAQSQSGTGKTAAFVLTMLSRVDP------DVVVPQCICLAPTRELAPQTGEVVE 181 (477)
T ss_pred hccCCcchHHHhhcchhhcCCchhhhhhhcCCCchhHHHHHHHHHhcCc------cccCCCceeeCchHHHHHHHHHHHH
Confidence 79999999999999999975 799999999999999999999998754 2346779999999999999999999
Q ss_pred HHhhhcCCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEccccccccc-CcHHHHHHH
Q psy15524 79 KLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQ-GYERDIAEF 157 (930)
Q Consensus 79 ~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~-~~~~~~~~i 157 (930)
+++... .+.....+.+.....-.. -..+|+|+||+.+.+++.....+.+..++.+|+||||.|++. ||+++-.+|
T Consensus 182 eMGKf~-~ita~yair~sk~~rG~~---i~eqIviGTPGtv~Dlm~klk~id~~kikvfVlDEAD~Mi~tqG~~D~S~rI 257 (477)
T KOG0332|consen 182 EMGKFT-ELTASYAIRGSKAKRGNK---LTEQIVIGTPGTVLDLMLKLKCIDLEKIKVFVLDEADVMIDTQGFQDQSIRI 257 (477)
T ss_pred HhcCce-eeeEEEEecCcccccCCc---chhheeeCCCccHHHHHHHHHhhChhhceEEEecchhhhhhcccccccchhh
Confidence 998876 355555555542111100 114799999999999998778888999999999999999875 677766665
Q ss_pred HHHHhhcCCCceEEEEEeecCCCccccccccccccccccchhhhhhhhhhhccchhhHHHHHHHHhhcCcCceEEEEecc
Q psy15524 158 LEILKKQKPQFQSILLSATLTPATCWCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSAT 237 (930)
Q Consensus 158 ~~~l~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~de~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~sat 237 (930)
...++. ..|.++||||
T Consensus 258 ~~~lP~----------------------------------------------------------------~~QllLFSAT 273 (477)
T KOG0332|consen 258 MRSLPR----------------------------------------------------------------NQQLLLFSAT 273 (477)
T ss_pred hhhcCC----------------------------------------------------------------cceEEeeech
Confidence 555442 2277777888
Q ss_pred cchHHHHhhhccccCCeeeccCCcccccCCCcccccCCCceeEEEEcCc-chhHHHHHHHHhhhccccccCCcceEEEEE
Q psy15524 238 LTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPP-KLRLVALASFILGKCQNVNEDEESKMLVFM 316 (930)
Q Consensus 238 ~~~~~~~l~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~k~~~l~~~l~~~~~~~~~~~~~~~iVF~ 316 (930)
+...+..++.....++..+.+...+ ....+|.|+|..|.. .+|..+|..+. ..-.-++.||||
T Consensus 274 f~e~V~~Fa~kivpn~n~i~Lk~ee---------l~L~~IkQlyv~C~~~~~K~~~l~~ly-------g~~tigqsiIFc 337 (477)
T KOG0332|consen 274 FVEKVAAFALKIVPNANVIILKREE---------LALDNIKQLYVLCACRDDKYQALVNLY-------GLLTIGQSIIFC 337 (477)
T ss_pred hHHHHHHHHHHhcCCCceeeeehhh---------ccccchhhheeeccchhhHHHHHHHHH-------hhhhhhheEEEE
Confidence 8788888888888877666555443 235779999999874 67999988865 344567999999
Q ss_pred ecccchhhhHHHHhhhh
Q psy15524 317 ATQDMADYHTELLSTKK 333 (930)
Q Consensus 317 ~s~~~~~~l~~~L~~~~ 333 (930)
.|+++|..++..|+..|
T Consensus 338 ~tk~ta~~l~~~m~~~G 354 (477)
T KOG0332|consen 338 HTKATAMWLYEEMRAEG 354 (477)
T ss_pred eehhhHHHHHHHHHhcC
Confidence 99999999999998765
|
|
| >PRK09401 reverse gyrase; Reviewed | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.8e-24 Score=265.61 Aligned_cols=256 Identities=20% Similarity=0.248 Sum_probs=175.4
Q ss_pred CCCccCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHH
Q psy15524 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKL 80 (930)
Q Consensus 1 ~g~~~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~ 80 (930)
+|+ .|+++|+++++.++.|+|++++||||+|||. |.++++..+.. .+.++|||+||++|+.|+++.++.+
T Consensus 77 ~G~-~pt~iQ~~~i~~il~g~dv~i~ApTGsGKT~-f~l~~~~~l~~--------~g~~alIL~PTreLa~Qi~~~l~~l 146 (1176)
T PRK09401 77 TGS-KPWSLQRTWAKRLLLGESFAIIAPTGVGKTT-FGLVMSLYLAK--------KGKKSYIIFPTRLLVEQVVEKLEKF 146 (1176)
T ss_pred cCC-CCcHHHHHHHHHHHCCCcEEEEcCCCCCHHH-HHHHHHHHHHh--------cCCeEEEEeccHHHHHHHHHHHHHH
Confidence 477 6999999999999999999999999999996 55565555432 2677999999999999999999999
Q ss_pred hhhcCCceeEEeeCCCc-----hHHHHHHhc-CCCcEEEEChHHHHHHHhcCCCccCCCccEEEEccccccccc------
Q psy15524 81 CKSFTWIVPSWLTGGEK-----MKSEKARIR-KGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQ------ 148 (930)
Q Consensus 81 ~~~~~~~~~~~~~g~~~-----~~~~~~~l~-~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~------ 148 (930)
+...+ ..+..++|+.. ...+...+. +.++|+|+||++|.+++. .+...++++|||||||+|+++
T Consensus 147 ~~~~~-~~~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~---~l~~~~~~~lVvDEaD~~L~~~k~id~ 222 (1176)
T PRK09401 147 GEKVG-CGVKILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFD---ELPKKKFDFVFVDDVDAVLKSSKNIDK 222 (1176)
T ss_pred hhhcC-ceEEEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHH---hccccccCEEEEEChHHhhhcccchhh
Confidence 88665 44555555543 222333444 459999999999998875 345567999999999999974
Q ss_pred -----CcH-HHHHHHHHHHhhcCCCceEEEEEeecCCCccccccccccccccccchhhhhhhhhhhccchhhHHHHHHHH
Q psy15524 149 -----GYE-RDIAEFLEILKKQKPQFQSILLSATLTPATCWCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEIL 222 (930)
Q Consensus 149 -----~~~-~~~~~i~~~l~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~de~~~~~~~~~~~~~~~~~~~~ 222 (930)
||. .++..++..++.... . ....+.+.++.+.+
T Consensus 223 ~l~~lGF~~~~i~~i~~~i~~~~~--------~---------------------------------~~~~~~i~~l~~~i 261 (1176)
T PRK09401 223 LLYLLGFSEEDIEKAMELIRLKRK--------Y---------------------------------EEIYEKIRELEEKI 261 (1176)
T ss_pred HHHhCCCCHHHHHHHHHhcccccc--------c---------------------------------chhhhHHHHHHHhh
Confidence 453 556666655543110 0 00011122222221
Q ss_pred hh-cCcCceEEEEecccchH-HHHhhhccccCCeeeccCCcccccCCCcccccCCCceeEEEEcCcchhHHHHHHHHhhh
Q psy15524 223 KK-QKPQFQSVLLSATLTPA-VQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALASFILGK 300 (930)
Q Consensus 223 ~~-~~~~~q~~~~sat~~~~-~~~l~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~ 300 (930)
.. .....|+++||||+++. +.. .+++++..+.+.... ....++.+.|+.++ +|...|..++..
T Consensus 262 ~~~~~~~~q~ilfSAT~~~~~~~~---~l~~~ll~~~v~~~~---------~~~rnI~~~yi~~~--~k~~~L~~ll~~- 326 (1176)
T PRK09401 262 AELKDKKGVLVVSSATGRPRGNRV---KLFRELLGFEVGSPV---------FYLRNIVDSYIVDE--DSVEKLVELVKR- 326 (1176)
T ss_pred hhcccCCceEEEEeCCCCccchHH---HHhhccceEEecCcc---------cccCCceEEEEEcc--cHHHHHHHHHHh-
Confidence 11 11256999999999875 332 223444444443322 13467888887665 566677777732
Q ss_pred ccccccCCcceEEEEEecccc---hhhhHHHHhhhh
Q psy15524 301 CQNVNEDEESKMLVFMATQDM---ADYHTELLSTKK 333 (930)
Q Consensus 301 ~~~~~~~~~~~~iVF~~s~~~---~~~l~~~L~~~~ 333 (930)
.+.++||||+++.. |+.++..|+..|
T Consensus 327 -------l~~~~LIFv~t~~~~~~ae~l~~~L~~~g 355 (1176)
T PRK09401 327 -------LGDGGLIFVPSDKGKEYAEELAEYLEDLG 355 (1176)
T ss_pred -------cCCCEEEEEecccChHHHHHHHHHHHHCC
Confidence 23589999999888 999999999876
|
|
| >TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.3e-24 Score=252.47 Aligned_cols=247 Identities=14% Similarity=0.072 Sum_probs=165.8
Q ss_pred CCCccCcHHHHHHHHHhhcCC-cEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEE-EcccHHHHHHHHHHHH
Q psy15524 1 MNITQVTTVQQLSIQPILDGG-DVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVI-ILPTRELALQTLEIFT 78 (930)
Q Consensus 1 ~g~~~l~~~Q~~ai~~~~~g~-~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lv-l~P~~~L~~q~~~~~~ 78 (930)
+||+ |+|+|+++++.+++|+ ++++++|||||||.+|.++.+.. .. ....++.|| ++|||+|+.|+++.++
T Consensus 12 ~G~~-PtpiQ~~~i~~il~G~~~v~~~apTGSGKTaa~aafll~~-~~------~~~~~~rLv~~vPtReLa~Qi~~~~~ 83 (844)
T TIGR02621 12 HGYS-PFPWQLSLAERFVAGQPPESCSTPTGLGKTSIIAAWLLAV-EI------GAKVPRRLVYVVNRRTVVDQVTEEAE 83 (844)
T ss_pred hCCC-CCHHHHHHHHHHHcCCCcceEecCCCCcccHHHHHhhccc-cc------cccccceEEEeCchHHHHHHHHHHHH
Confidence 4897 9999999999999998 58888999999999776555522 11 122344555 7799999999999999
Q ss_pred HHhhhcC----------------------CceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcC--------CC
Q psy15524 79 KLCKSFT----------------------WIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHT--------ET 128 (930)
Q Consensus 79 ~~~~~~~----------------------~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~--------~~ 128 (930)
+++..+. .+.+..++||.....+...+..+++|||||+..+.+-.... .-
T Consensus 84 ~~~k~l~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l~~~p~IIVgT~D~i~sr~L~~gYg~~~~~~p 163 (844)
T TIGR02621 84 KIGERLPDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWMLDPHRPAVIVGTVDMIGSRLLFSGYGCGFKSRP 163 (844)
T ss_pred HHHHHhcccchhhhhhhhhhccccccccCCeEEEEEECCCChHHHHHhcCCCCcEEEECHHHHcCCcccccccccccccc
Confidence 9987652 26788899999999999999999999999965442211100 00
Q ss_pred c---cCCCccEEEEcccccccccCcHHHHHHHHHHHh--hcCCCceEEEEEeecCCCccccccccccccccccchhhhhh
Q psy15524 129 L---KFSKVEHLVLDEADRILDQGYERDIAEFLEILK--KQKPQFQSILLSATLTPATCWCKHTETLKFSKVEHLVLDEA 203 (930)
Q Consensus 129 ~---~l~~l~~vViDE~h~~~~~~~~~~~~~i~~~l~--~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~de~ 203 (930)
+ .+++++++|+|||| ++.+|..++..|+..+. ......
T Consensus 164 i~ag~L~~v~~LVLDEAD--Ld~gF~~~l~~Il~~l~rp~~~rpr----------------------------------- 206 (844)
T TIGR02621 164 LHAGFLGQDALIVHDEAH--LEPAFQELLKQIMNEQQRPPDFLPL----------------------------------- 206 (844)
T ss_pred chhhhhccceEEEEehhh--hccccHHHHHHHHHhcccCcccccc-----------------------------------
Confidence 1 26889999999999 67889988888887642 111113
Q ss_pred hhhhhccchhhHHHHHHHHhhcCcCceEEEEecccchHHHHhhhccccCCeeeccCCcccccCCCcccccCCCceeEEEE
Q psy15524 204 DRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIV 283 (930)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~sat~~~~~~~l~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~ 283 (930)
|+++||||++..+..+...++.++..+.+.... .....+.+. ..
T Consensus 207 --------------------------QtLLFSAT~p~ei~~l~~~~~~~p~~i~V~~~~---------l~a~ki~q~-v~ 250 (844)
T TIGR02621 207 --------------------------RVVELTATSRTDGPDRTTLLSAEDYKHPVLKKR---------LAAKKIVKL-VP 250 (844)
T ss_pred --------------------------eEEEEecCCCccHHHHHHHHccCCceeeccccc---------ccccceEEE-Ee
Confidence 555555555544444444444444443332211 112234443 33
Q ss_pred cCcchhHHHHHHHHhhhccccccCCcceEEEEEecccchhhhHHHHhhh
Q psy15524 284 TPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTK 332 (930)
Q Consensus 284 ~~~~~k~~~l~~~l~~~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~ 332 (930)
++.+.|...+...+... ....++++||||||++.|+.+++.|++.
T Consensus 251 v~~e~Kl~~lv~~L~~l----l~e~g~~vLVF~NTv~~Aq~L~~~L~~~ 295 (844)
T TIGR02621 251 PSDEKFLSTMVKELNLL----MKDSGGAILVFCRTVKHVRKVFAKLPKE 295 (844)
T ss_pred cChHHHHHHHHHHHHHH----HhhCCCcEEEEECCHHHHHHHHHHHHhc
Confidence 44444554444443221 1234678999999999999999999764
|
This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs. |
| >PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=6.2e-24 Score=259.38 Aligned_cols=324 Identities=19% Similarity=0.232 Sum_probs=196.0
Q ss_pred CCCCHHHHHhHHhhhc----C-CcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHHH
Q psy15524 413 TQVTTVQQLSIQPILD----G-GDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFT 487 (930)
Q Consensus 413 ~~~~~iQ~~~i~~il~----~-~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~ 487 (930)
..++++|.+||..+.. | +.++++++||||||++++ .++..+.+. ....++|||+|+++|+.|+.+.|.
T Consensus 412 ~~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~tai-~li~~L~~~------~~~~rVLfLvDR~~L~~Qa~~~F~ 484 (1123)
T PRK11448 412 LGLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTAI-ALMYRLLKA------KRFRRILFLVDRSALGEQAEDAFK 484 (1123)
T ss_pred CCCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHHH-HHHHHHHhc------CccCeEEEEecHHHHHHHHHHHHH
Confidence 3589999999988763 3 569999999999999844 444444431 235689999999999999999998
Q ss_pred HhhccCCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhcc----CCcccccceEEEEecchhhhh-------
Q psy15524 488 KLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHT----ETLKFSKVEHLVLDEADRILD------- 556 (930)
Q Consensus 488 ~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~----~~~~~~~l~~lVlDEah~l~~------- 556 (930)
........ ....+.+...... ........|+|+|...+...+... ....+..+++||+||||+-..
T Consensus 485 ~~~~~~~~-~~~~i~~i~~L~~--~~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDEaHRs~~~d~~~~~ 561 (1123)
T PRK11448 485 DTKIEGDQ-TFASIYDIKGLED--KFPEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDEAHRGYTLDKEMSE 561 (1123)
T ss_pred hccccccc-chhhhhchhhhhh--hcccCCCCEEEEEHHHHHHhhhccccccccCCCCcccEEEEECCCCCCcccccccc
Confidence 76422110 0001111110011 111235789999999986654321 123567899999999999531
Q ss_pred --cCc------HHHHHHHHHHHhhcCccceEEEEccccCHHHHHHHhh--------------hcC---CCEEEEccCCCC
Q psy15524 557 --QGY------ERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGM--------------TLQ---NPIQIDAADSTD 611 (930)
Q Consensus 557 --~g~------~~~l~~i~~~l~~~~~~~q~vl~SAT~~~~~~~l~~~--------------~~~---~~~~i~~~~~~~ 611 (930)
.+| ...+..++... +...++||||+......+.+. ++. .|..+...-...
T Consensus 562 ~~~~~~~~~~~~~~yr~iL~yF-----dA~~IGLTATP~r~t~~~FG~pv~~Ysl~eAI~DG~Lv~~~~p~~i~t~~~~~ 636 (1123)
T PRK11448 562 GELQFRDQLDYVSKYRRVLDYF-----DAVKIGLTATPALHTTEIFGEPVYTYSYREAVIDGYLIDHEPPIRIETRLSQE 636 (1123)
T ss_pred chhccchhhhHHHHHHHHHhhc-----CccEEEEecCCccchhHHhCCeeEEeeHHHHHhcCCcccCcCCEEEEEEeccc
Confidence 111 12334444432 345799999996433322221 011 011111100000
Q ss_pred -ccc-CccceecCCCceEEE--EEcCc---------------hhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHH
Q psy15524 612 -IHN-TTDSLVIPDSLKQHF--IVTPP---------------KLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADY 672 (930)
Q Consensus 612 -~~~-~~~~~~~~~~~~~~~--~~~~~---------------~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~ 672 (930)
... ..+...........+ ...+. ..+...++..+..+... ...+|+||||.++++++.
T Consensus 637 gi~~~~~e~~~~~~~~~~~i~~~~l~d~~~~~~~~~~~~vi~~~~~~~i~~~l~~~l~~---~~~~KtiIF~~s~~HA~~ 713 (1123)
T PRK11448 637 GIHFEKGEEVEVINTQTGEIDLATLEDEVDFEVEDFNRRVITESFNRVVCEELAKYLDP---TGEGKTLIFAATDAHADM 713 (1123)
T ss_pred cccccccchhhhcchhhhhhhhccCcHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHhc---cCCCcEEEEEcCHHHHHH
Confidence 000 000000000000000 00000 01111122222222211 124799999999999999
Q ss_pred HHHHHhhhcC------CCceEEEecCCCCHHHHHHHHHHhhcCCC-cEEEeccccccccCCCCccEEEEecCCCChhhHH
Q psy15524 673 HTELLSTVLG------ENIAFFKLHGSMSQSERTEVFKTFRSVKS-GVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYV 745 (930)
Q Consensus 673 ~~~~l~~~~~------~~~~~~~lhg~~~~~~R~~v~~~F~~~~~-~vLv~T~~~~~GlDip~v~~VI~~~~p~s~~~y~ 745 (930)
+.+.|.+.+. .+..+..+||+++ ++..++++|+++.. .|+|+++++++|+|+|.|++||.+.++.|...|+
T Consensus 714 i~~~L~~~f~~~~~~~~~~~v~~itg~~~--~~~~li~~Fk~~~~p~IlVsvdmL~TG~DvP~v~~vVf~rpvkS~~lf~ 791 (1123)
T PRK11448 714 VVRLLKEAFKKKYGQVEDDAVIKITGSID--KPDQLIRRFKNERLPNIVVTVDLLTTGIDVPSICNLVFLRRVRSRILYE 791 (1123)
T ss_pred HHHHHHHHHHhhcCCcCccceEEEeCCcc--chHHHHHHHhCCCCCeEEEEecccccCCCcccccEEEEecCCCCHHHHH
Confidence 9988876532 1224566899885 56789999999887 6999999999999999999999999999999999
Q ss_pred hhhcccccCCC
Q psy15524 746 HRVGRTARVGH 756 (930)
Q Consensus 746 qr~GRagR~g~ 756 (930)
||+||+.|...
T Consensus 792 QmIGRgtR~~~ 802 (1123)
T PRK11448 792 QMLGRATRLCP 802 (1123)
T ss_pred HHHhhhccCCc
Confidence 99999999754
|
|
| >PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.7e-24 Score=210.56 Aligned_cols=167 Identities=37% Similarity=0.564 Sum_probs=140.3
Q ss_pred CHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHHHHhhccCCC
Q psy15524 416 TTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTW 495 (930)
Q Consensus 416 ~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~ 495 (930)
||+|.++++.+.+|+|+++.||||+|||++|++|++..+.+. ...+++|++|+++|+.|+++.+..++.. ..
T Consensus 1 t~~Q~~~~~~i~~~~~~li~aptGsGKT~~~~~~~l~~~~~~-------~~~~~lii~P~~~l~~q~~~~~~~~~~~-~~ 72 (169)
T PF00270_consen 1 TPLQQEAIEAIISGKNVLISAPTGSGKTLAYILPALNRLQEG-------KDARVLIIVPTRALAEQQFERLRKFFSN-TN 72 (169)
T ss_dssp -HHHHHHHHHHHTTSEEEEECSTTSSHHHHHHHHHHHHHHTT-------SSSEEEEEESSHHHHHHHHHHHHHHTTT-TT
T ss_pred CHHHHHHHHHHHcCCCEEEECCCCCccHHHHHHHHHhhhccC-------CCceEEEEeecccccccccccccccccc-cc
Confidence 799999999999999999999999999999999999988762 2348999999999999999999999876 33
Q ss_pred cceEEEeCCCchH-HHHHHHhcCCcEEEECchhHHHhhhccCCcccccceEEEEecchhhhhcCcHHHHHHHHHHHhhcC
Q psy15524 496 IVPSWLTGGEKMK-SEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQK 574 (930)
Q Consensus 496 ~~~~~~~gg~~~~-~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~l~~~g~~~~l~~i~~~l~~~~ 574 (930)
.....++|+.... .....+..+++|+|+||+++.+++..... .+.+++++|+||+|.+.++++...+..+++.+....
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~-~~~~~~~iViDE~h~l~~~~~~~~~~~i~~~~~~~~ 151 (169)
T PF00270_consen 73 VRVVLLHGGQSISEDQREVLSNQADILVTTPEQLLDLISNGKI-NISRLSLIVIDEAHHLSDETFRAMLKSILRRLKRFK 151 (169)
T ss_dssp SSEEEESTTSCHHHHHHHHHHTTSSEEEEEHHHHHHHHHTTSS-TGTTESEEEEETHHHHHHTTHHHHHHHHHHHSHTTT
T ss_pred cccccccccccccccccccccccccccccCcchhhcccccccc-ccccceeeccCcccccccccHHHHHHHHHHHhcCCC
Confidence 4566678887654 44445556799999999999999987433 667799999999999999888888888888876543
Q ss_pred ccceEEEEccccCHHHHH
Q psy15524 575 PQFQSILLSATLTPAVQR 592 (930)
Q Consensus 575 ~~~q~vl~SAT~~~~~~~ 592 (930)
+.|++++|||+++.+++
T Consensus 152 -~~~~i~~SAT~~~~~~~ 168 (169)
T PF00270_consen 152 -NIQIILLSATLPSNVEK 168 (169)
T ss_dssp -TSEEEEEESSSTHHHHH
T ss_pred -CCcEEEEeeCCChhHhh
Confidence 68899999999976665
|
Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A .... |
| >cd00268 DEADc DEAD-box helicases | Back alignment and domain information |
|---|
Probab=99.92 E-value=9e-24 Score=215.73 Aligned_cols=169 Identities=46% Similarity=0.692 Sum_probs=141.5
Q ss_pred CCCccCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHH
Q psy15524 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKL 80 (930)
Q Consensus 1 ~g~~~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~ 80 (930)
+|++.|+++|+++++.+.+|+|+++++|||+|||++|++|+++.+.... ...+++++|++|+++|+.|+.+.++.+
T Consensus 17 ~~~~~~~~~Q~~~~~~~~~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~----~~~~~~viii~p~~~L~~q~~~~~~~~ 92 (203)
T cd00268 17 LGFEKPTPIQARAIPPLLSGRDVIGQAQTGSGKTAAFLIPILEKLDPSP----KKDGPQALILAPTRELALQIAEVARKL 92 (203)
T ss_pred cCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHHHHhhc----ccCCceEEEEcCCHHHHHHHHHHHHHH
Confidence 5889999999999999999999999999999999999999999987632 124678999999999999999999998
Q ss_pred hhhcCCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCcHHHHHHHHHH
Q psy15524 81 CKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEI 160 (930)
Q Consensus 81 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~~~~~~~i~~~ 160 (930)
....+ +.+..+.|+.........+..+++|+|+||+.+.+.+.+ ....+.+++++|+||+|.+.+.++...+..++..
T Consensus 93 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~-~~~~~~~l~~lIvDE~h~~~~~~~~~~~~~~~~~ 170 (203)
T cd00268 93 GKHTN-LKVVVIYGGTSIDKQIRKLKRGPHIVVATPGRLLDLLER-GKLDLSKVKYLVLDEADRMLDMGFEDQIREILKL 170 (203)
T ss_pred hccCC-ceEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHc-CCCChhhCCEEEEeChHHhhccChHHHHHHHHHh
Confidence 76543 677778888877666666667899999999999998876 4467889999999999999988888888877776
Q ss_pred HhhcCCCceEEEEEeecC
Q psy15524 161 LKKQKPQFQSILLSATLT 178 (930)
Q Consensus 161 l~~~~~~~~~i~lSAT~~ 178 (930)
++. .++++++|||++
T Consensus 171 l~~---~~~~~~~SAT~~ 185 (203)
T cd00268 171 LPK---DRQTLLFSATMP 185 (203)
T ss_pred CCc---ccEEEEEeccCC
Confidence 543 446666666654
|
A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region. |
| >COG1202 Superfamily II helicase, archaea-specific [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.4e-24 Score=229.01 Aligned_cols=247 Identities=21% Similarity=0.259 Sum_probs=191.9
Q ss_pred CCCccCcHHHHHHHHH-hhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHH
Q psy15524 1 MNITQVTTVQQLSIQP-ILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTK 79 (930)
Q Consensus 1 ~g~~~l~~~Q~~ai~~-~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~ 79 (930)
.|+++|.|+|..|+.+ +++|.|.+|+++|+||||++.-++-+..+.. .|.+.|+|+|..+||+|.++.|++
T Consensus 212 ~G~~eLlPVQ~laVe~GLLeG~nllVVSaTasGKTLIgElAGi~~~l~--------~g~KmlfLvPLVALANQKy~dF~~ 283 (830)
T COG1202 212 EGIEELLPVQVLAVEAGLLEGENLLVVSATASGKTLIGELAGIPRLLS--------GGKKMLFLVPLVALANQKYEDFKE 283 (830)
T ss_pred cCcceecchhhhhhhhccccCCceEEEeccCCCcchHHHhhCcHHHHh--------CCCeEEEEehhHHhhcchHHHHHH
Confidence 4899999999999998 7799999999999999999999988888764 367799999999999999999999
Q ss_pred HhhhcCCceeEEeeCCCchHHHHH----HhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCcHHHHH
Q psy15524 80 LCKSFTWIVPSWLTGGEKMKSEKA----RIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIA 155 (930)
Q Consensus 80 ~~~~~~~~~~~~~~g~~~~~~~~~----~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~~~~~~ 155 (930)
....++ ..+..-.|......... ....++||||||.|-+-.+++. + -.+.+++.|||||+|.+-+..+++.+.
T Consensus 284 rYs~Lg-lkvairVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLRt-g-~~lgdiGtVVIDEiHtL~deERG~RLd 360 (830)
T COG1202 284 RYSKLG-LKVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRT-G-KDLGDIGTVVIDEIHTLEDEERGPRLD 360 (830)
T ss_pred Hhhccc-ceEEEEechhhhcccCCccccCCCCCCcEEEeechhHHHHHHc-C-CcccccceEEeeeeeeccchhcccchh
Confidence 887776 55555555554433322 1223589999999999777764 3 568999999999999999999999999
Q ss_pred HHHHHHhhcCCCceEEEEEeecCCCccccccccccccccccchhhhhhhhhhhccchhhHHHHHHHHhhcCcCceEEEEe
Q psy15524 156 EFLEILKKQKPQFQSILLSATLTPATCWCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLS 235 (930)
Q Consensus 156 ~i~~~l~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~de~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~s 235 (930)
-++.+++...+..|+|+||||..++.
T Consensus 361 GLI~RLr~l~~~AQ~i~LSATVgNp~------------------------------------------------------ 386 (830)
T COG1202 361 GLIGRLRYLFPGAQFIYLSATVGNPE------------------------------------------------------ 386 (830)
T ss_pred hHHHHHHHhCCCCeEEEEEeecCChH------------------------------------------------------
Confidence 99999999999999999999998733
Q ss_pred cccchHHHHhhhccccCCeeeccCCcccccCCCcccccCCCceeEEEEcC-cchhHHHHHHHHhhhcc-ccccCCcceEE
Q psy15524 236 ATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTP-PKLRLVALASFILGKCQ-NVNEDEESKML 313 (930)
Q Consensus 236 at~~~~~~~l~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~k~~~l~~~l~~~~~-~~~~~~~~~~i 313 (930)
.+++.+-.+.+... ..|..+..+++++. ..+|+..+..+...... .....-.+++|
T Consensus 387 --------elA~~l~a~lV~y~--------------~RPVplErHlvf~~~e~eK~~ii~~L~k~E~~~~sskg~rGQtI 444 (830)
T COG1202 387 --------ELAKKLGAKLVLYD--------------ERPVPLERHLVFARNESEKWDIIARLVKREFSTESSKGYRGQTI 444 (830)
T ss_pred --------HHHHHhCCeeEeec--------------CCCCChhHeeeeecCchHHHHHHHHHHHHHHhhhhccCcCCceE
Confidence 12222211222221 12455778888887 56788777777643211 11334457999
Q ss_pred EEEecccchhhhHHHHhhhhh
Q psy15524 314 VFMATQDMADYHTELLSTKKK 334 (930)
Q Consensus 314 VF~~s~~~~~~l~~~L~~~~~ 334 (930)
||++|++.|+.+|.+|..+|.
T Consensus 445 VFT~SRrr~h~lA~~L~~kG~ 465 (830)
T COG1202 445 VFTYSRRRCHELADALTGKGL 465 (830)
T ss_pred EEecchhhHHHHHHHhhcCCc
Confidence 999999999999999998765
|
|
| >TIGR01389 recQ ATP-dependent DNA helicase RecQ | Back alignment and domain information |
|---|
Probab=99.92 E-value=6e-24 Score=251.02 Aligned_cols=160 Identities=23% Similarity=0.344 Sum_probs=126.1
Q ss_pred CCCccCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHH
Q psy15524 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKL 80 (930)
Q Consensus 1 ~g~~~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~ 80 (930)
|||.+++|.|+++|+++++|+|+++++|||+|||+||++|++.. +..++|++|+++|+.|+++.++.+
T Consensus 9 fg~~~fr~~Q~~~i~~il~g~dvlv~~PTG~GKTl~y~lpal~~------------~g~~lVisPl~sL~~dq~~~l~~~ 76 (591)
T TIGR01389 9 FGYDDFRPGQEEIISHVLDGRDVLVVMPTGGGKSLCYQVPALLL------------KGLTVVISPLISLMKDQVDQLRAA 76 (591)
T ss_pred cCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHhHHHHHHHHHc------------CCcEEEEcCCHHHHHHHHHHHHHc
Confidence 79999999999999999999999999999999999999999742 235899999999999999999875
Q ss_pred hhhcCCceeEEeeCCCchHHHHH----HhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccC--cHHHH
Q psy15524 81 CKSFTWIVPSWLTGGEKMKSEKA----RIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQG--YERDI 154 (930)
Q Consensus 81 ~~~~~~~~~~~~~g~~~~~~~~~----~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~--~~~~~ 154 (930)
+ +.+..+.++........ ...+.++|+++||+++...... ..+...++++|||||||++.+|| |++.+
T Consensus 77 g-----i~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~-~~l~~~~l~~iViDEaH~i~~~g~~frp~y 150 (591)
T TIGR01389 77 G-----VAAAYLNSTLSAKEQQDIEKALVNGELKLLYVAPERLEQDYFL-NMLQRIPIALVAVDEAHCVSQWGHDFRPEY 150 (591)
T ss_pred C-----CcEEEEeCCCCHHHHHHHHHHHhCCCCCEEEEChhHhcChHHH-HHHhcCCCCEEEEeCCcccccccCccHHHH
Confidence 3 45556666655443332 2235689999999998643222 23446789999999999999987 88888
Q ss_pred HHHHHHHhhcCCCceEEEEEeecCC
Q psy15524 155 AEFLEILKKQKPQFQSILLSATLTP 179 (930)
Q Consensus 155 ~~i~~~l~~~~~~~~~i~lSAT~~~ 179 (930)
..+...... .++.+++++|||+++
T Consensus 151 ~~l~~l~~~-~~~~~vi~lTAT~~~ 174 (591)
T TIGR01389 151 QRLGSLAER-FPQVPRIALTATADA 174 (591)
T ss_pred HHHHHHHHh-CCCCCEEEEEeCCCH
Confidence 776654443 344569999999875
|
The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ. |
| >PRK11057 ATP-dependent DNA helicase RecQ; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=7.4e-24 Score=249.10 Aligned_cols=160 Identities=24% Similarity=0.315 Sum_probs=123.7
Q ss_pred CCCccCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHH
Q psy15524 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKL 80 (930)
Q Consensus 1 ~g~~~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~ 80 (930)
+||+.|+|+|+++++++++|+|+++++|||+|||+||++|++.. +..+||++|+++|+.|+.+.++..
T Consensus 21 fG~~~~r~~Q~~ai~~il~g~dvlv~apTGsGKTl~y~lpal~~------------~g~tlVisPl~sL~~dqv~~l~~~ 88 (607)
T PRK11057 21 FGYQQFRPGQQEIIDAVLSGRDCLVVMPTGGGKSLCYQIPALVL------------DGLTLVVSPLISLMKDQVDQLLAN 88 (607)
T ss_pred cCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHc------------CCCEEEEecHHHHHHHHHHHHHHc
Confidence 69999999999999999999999999999999999999999843 234999999999999999998875
Q ss_pred hhhcCCceeEEeeCCCchHHHHH----HhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccC--cHHHH
Q psy15524 81 CKSFTWIVPSWLTGGEKMKSEKA----RIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQG--YERDI 154 (930)
Q Consensus 81 ~~~~~~~~~~~~~g~~~~~~~~~----~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~--~~~~~ 154 (930)
+ +....+.++........ ...+..+++++||+++...... ..+...++++|||||||++++|| |++.+
T Consensus 89 g-----i~~~~~~s~~~~~~~~~~~~~~~~g~~~il~~tPe~l~~~~~~-~~l~~~~l~~iVIDEaH~i~~~G~~fr~~y 162 (607)
T PRK11057 89 G-----VAAACLNSTQTREQQLEVMAGCRTGQIKLLYIAPERLMMDNFL-EHLAHWNPALLAVDEAHCISQWGHDFRPEY 162 (607)
T ss_pred C-----CcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEEChHHhcChHHH-HHHhhCCCCEEEEeCccccccccCcccHHH
Confidence 3 44555555554443322 2234589999999998632111 12334579999999999999997 77777
Q ss_pred HHHHHHHhhcCCCceEEEEEeecCC
Q psy15524 155 AEFLEILKKQKPQFQSILLSATLTP 179 (930)
Q Consensus 155 ~~i~~~l~~~~~~~~~i~lSAT~~~ 179 (930)
..+ ..++...++++++++|||+++
T Consensus 163 ~~L-~~l~~~~p~~~~v~lTAT~~~ 186 (607)
T PRK11057 163 AAL-GQLRQRFPTLPFMALTATADD 186 (607)
T ss_pred HHH-HHHHHhCCCCcEEEEecCCCh
Confidence 654 344445567889999999865
|
|
| >PRK00254 ski2-like helicase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.2e-23 Score=253.15 Aligned_cols=162 Identities=23% Similarity=0.269 Sum_probs=136.1
Q ss_pred CCCccCcHHHHHHHHH-hhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHH
Q psy15524 1 MNITQVTTVQQLSIQP-ILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTK 79 (930)
Q Consensus 1 ~g~~~l~~~Q~~ai~~-~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~ 79 (930)
+||+.|+|+|.+|++. +++|+|+++++|||||||++|.+|+++.+.. .+.++|||+|+++|+.|+++.+..
T Consensus 19 ~g~~~l~~~Q~~ai~~~~~~g~nvlv~apTGsGKT~~~~l~il~~l~~--------~~~~~l~l~P~~aLa~q~~~~~~~ 90 (720)
T PRK00254 19 RGIEELYPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMVNKLLR--------EGGKAVYLVPLKALAEEKYREFKD 90 (720)
T ss_pred CCCCCCCHHHHHHHHHHHhCCCcEEEECCCCcHHHHHHHHHHHHHHHh--------cCCeEEEEeChHHHHHHHHHHHHH
Confidence 5899999999999996 7899999999999999999999999988754 245799999999999999999987
Q ss_pred HhhhcCCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCcHHHHHHHHH
Q psy15524 80 LCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLE 159 (930)
Q Consensus 80 ~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~~~~~~~i~~ 159 (930)
+. ..+ ..+..++|+...... ....++|+|+||+++..++.+ ....++++++|||||+|.+.++++++.+..++.
T Consensus 91 ~~-~~g-~~v~~~~Gd~~~~~~---~~~~~~IiV~Tpe~~~~ll~~-~~~~l~~l~lvViDE~H~l~~~~rg~~le~il~ 164 (720)
T PRK00254 91 WE-KLG-LRVAMTTGDYDSTDE---WLGKYDIIIATAEKFDSLLRH-GSSWIKDVKLVVADEIHLIGSYDRGATLEMILT 164 (720)
T ss_pred Hh-hcC-CEEEEEeCCCCCchh---hhccCCEEEEcHHHHHHHHhC-CchhhhcCCEEEEcCcCccCCccchHHHHHHHH
Confidence 64 333 677777877654322 234689999999999888765 334578999999999999999999999998888
Q ss_pred HHhhcCCCceEEEEEeecCC
Q psy15524 160 ILKKQKPQFQSILLSATLTP 179 (930)
Q Consensus 160 ~l~~~~~~~~~i~lSAT~~~ 179 (930)
.+. .++|++++|||+++
T Consensus 165 ~l~---~~~qiI~lSATl~n 181 (720)
T PRK00254 165 HML---GRAQILGLSATVGN 181 (720)
T ss_pred hcC---cCCcEEEEEccCCC
Confidence 764 45799999999976
|
|
| >COG1204 Superfamily II helicase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=5e-23 Score=241.97 Aligned_cols=166 Identities=26% Similarity=0.322 Sum_probs=141.6
Q ss_pred CCccCcHHHHHHHHHhh-cCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHH
Q psy15524 2 NITQVTTVQQLSIQPIL-DGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKL 80 (930)
Q Consensus 2 g~~~l~~~Q~~ai~~~~-~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~ 80 (930)
|+.++.+.|++++.... .|+|+|+++|||||||+++.+.+++.+.+. +.++||++|+++||.|++++|. .
T Consensus 28 ~~~el~~~qq~av~~~~~~~~N~li~aPTgsGKTlIA~lai~~~l~~~--------~~k~vYivPlkALa~Ek~~~~~-~ 98 (766)
T COG1204 28 GIDELFNPQQEAVEKGLLSDENVLISAPTGSGKTLIALLAILSTLLEG--------GGKVVYIVPLKALAEEKYEEFS-R 98 (766)
T ss_pred ChHHhhHHHHHHhhccccCCCcEEEEcCCCCchHHHHHHHHHHHHHhc--------CCcEEEEeChHHHHHHHHHHhh-h
Confidence 55678888999987754 569999999999999999999999999762 5679999999999999999999 3
Q ss_pred hhhcCCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCcHHHHHHHHHH
Q psy15524 81 CKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEI 160 (930)
Q Consensus 81 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~~~~~~~i~~~ 160 (930)
+..++ +++...+|+...... .-.+++|+|+|||++-..+++... .+..+++|||||+|.+.+..+++.++.++.+
T Consensus 99 ~~~~G-irV~~~TgD~~~~~~---~l~~~~ViVtT~EK~Dsl~R~~~~-~~~~V~lvViDEiH~l~d~~RG~~lE~iv~r 173 (766)
T COG1204 99 LEELG-IRVGISTGDYDLDDE---RLARYDVIVTTPEKLDSLTRKRPS-WIEEVDLVVIDEIHLLGDRTRGPVLESIVAR 173 (766)
T ss_pred HHhcC-CEEEEecCCcccchh---hhccCCEEEEchHHhhHhhhcCcc-hhhcccEEEEeeeeecCCcccCceehhHHHH
Confidence 44455 788888888764432 124689999999999888876443 6789999999999999998899999999999
Q ss_pred HhhcCCCceEEEEEeecCCCc
Q psy15524 161 LKKQKPQFQSILLSATLTPAT 181 (930)
Q Consensus 161 l~~~~~~~~~i~lSAT~~~~~ 181 (930)
.+..++.+|+++||||+++..
T Consensus 174 ~~~~~~~~rivgLSATlpN~~ 194 (766)
T COG1204 174 MRRLNELIRIVGLSATLPNAE 194 (766)
T ss_pred HHhhCcceEEEEEeeecCCHH
Confidence 999988899999999999854
|
|
| >PRK14701 reverse gyrase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.7e-23 Score=260.40 Aligned_cols=259 Identities=17% Similarity=0.201 Sum_probs=174.2
Q ss_pred CCCccCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHH
Q psy15524 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKL 80 (930)
Q Consensus 1 ~g~~~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~ 80 (930)
+|| +|+++|+++++.++.|+|++++||||+|||++++++++.... .+.++|||+||++|+.|+++.++.+
T Consensus 76 ~G~-~pt~iQ~~~i~~il~G~d~li~APTGsGKTl~~~~~al~~~~---------~g~~aLVl~PTreLa~Qi~~~l~~l 145 (1638)
T PRK14701 76 TGF-EFWSIQKTWAKRILRGKSFSIVAPTGMGKSTFGAFIALFLAL---------KGKKCYIILPTTLLVKQTVEKIESF 145 (1638)
T ss_pred hCC-CCCHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHHHHHh---------cCCeEEEEECHHHHHHHHHHHHHHH
Confidence 589 699999999999999999999999999999977766654421 2567999999999999999999999
Q ss_pred hhhcC-CceeEEeeCCCchHHHH---HHhcC-CCcEEEEChHHHHHHHhcCCCccCCCccEEEEccccccccc-------
Q psy15524 81 CKSFT-WIVPSWLTGGEKMKSEK---ARIRK-GISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQ------- 148 (930)
Q Consensus 81 ~~~~~-~~~~~~~~g~~~~~~~~---~~l~~-~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~------- 148 (930)
+..++ .+.+..++|+....++. ..+.. .++|+|+||++|.+.+.. .. ..+++++||||||+|++|
T Consensus 146 ~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~--l~-~~~i~~iVVDEAD~ml~~~knid~~ 222 (1638)
T PRK14701 146 CEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPE--MK-HLKFDFIFVDDVDAFLKASKNIDRS 222 (1638)
T ss_pred HhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHH--Hh-hCCCCEEEEECceeccccccccchh
Confidence 87654 35566677887665543 23444 499999999999887653 11 278999999999999985
Q ss_pred ----CcHHHHHH-HHHHHhhcCCCceEEEEEeecCCCccccccccccccccccchhhhhhhhhhhccchhhHHHHHHHHh
Q psy15524 149 ----GYERDIAE-FLEILKKQKPQFQSILLSATLTPATCWCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILK 223 (930)
Q Consensus 149 ----~~~~~~~~-i~~~l~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~de~~~~~~~~~~~~~~~~~~~~~ 223 (930)
||.+++.. +.+.++.... . . .....+.++.+-..+.
T Consensus 223 L~llGF~~e~~~~~~~il~~~~~----------~----------------~-------------~~~~~~~~~~l~~~~~ 263 (1638)
T PRK14701 223 LQLLGFYEEIIEKAWKIIYLKKQ----------G----------------N-------------IEDAMEKREILNKEIE 263 (1638)
T ss_pred hhcCCChHHHHHHHHHhhhcccc----------c----------------c-------------cchhhhhhhhhhhhhh
Confidence 56666543 2222211000 0 0 0000111222222222
Q ss_pred hcCcCce-EEEEecccchH--HHHhhhccccCCeeeccCCcccccCCCcccccCCCceeEEEEcCcchhHHHHHHHHhhh
Q psy15524 224 KQKPQFQ-SVLLSATLTPA--VQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALASFILGK 300 (930)
Q Consensus 224 ~~~~~~q-~~~~sat~~~~--~~~l~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~ 300 (930)
..+...| .++||||+++. +.. +++++..+.+.... ....++.+.|+.++...+ ..+..++..
T Consensus 264 ~~~~~~~~ll~~SAT~~~r~~~~~----l~~~~l~f~v~~~~---------~~lr~i~~~yi~~~~~~k-~~L~~ll~~- 328 (1638)
T PRK14701 264 KIGNKIGCLIVASATGKAKGDRVK----LYRELLGFEVGSGR---------SALRNIVDVYLNPEKIIK-EHVRELLKK- 328 (1638)
T ss_pred hcCCCccEEEEEecCCCchhHHHH----HhhcCeEEEecCCC---------CCCCCcEEEEEECCHHHH-HHHHHHHHh-
Confidence 1122334 67899999863 332 34566666554332 234568888877655545 567677732
Q ss_pred ccccccCCcceEEEEEecccch---hhhHHHHhhhh
Q psy15524 301 CQNVNEDEESKMLVFMATQDMA---DYHTELLSTKK 333 (930)
Q Consensus 301 ~~~~~~~~~~~~iVF~~s~~~~---~~l~~~L~~~~ 333 (930)
.+.++||||+|++.+ +.++..|+..|
T Consensus 329 -------~g~~gIVF~~t~~~~e~ae~la~~L~~~G 357 (1638)
T PRK14701 329 -------LGKGGLIFVPIDEGAEKAEEIEKYLLEDG 357 (1638)
T ss_pred -------CCCCeEEEEeccccchHHHHHHHHHHHCC
Confidence 246899999998865 89999998765
|
|
| >COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.2e-22 Score=199.46 Aligned_cols=311 Identities=20% Similarity=0.228 Sum_probs=211.6
Q ss_pred CCCHHHHHhHHhhh----cCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHHHHh
Q psy15524 414 QVTTVQQLSIQPIL----DGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKL 489 (930)
Q Consensus 414 ~~~~iQ~~~i~~il----~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~ 489 (930)
+++|.|+.+-..++ +.+|.++.|-||+|||-. +.+.++.... .|.++.+.+|....|.+++.+++..
T Consensus 97 ~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEM-if~~i~~al~--------~G~~vciASPRvDVclEl~~Rlk~a 167 (441)
T COG4098 97 TLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEM-IFQGIEQALN--------QGGRVCIASPRVDVCLELYPRLKQA 167 (441)
T ss_pred ccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhh-hHHHHHHHHh--------cCCeEEEecCcccchHHHHHHHHHh
Confidence 78888988776655 467899999999999985 5666666553 4888999999999999999999887
Q ss_pred hccCCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhccCCcccccceEEEEecchhhhhcCcHHHHHHHHHH
Q psy15524 490 CKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEI 569 (930)
Q Consensus 490 ~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~l~~~g~~~~l~~i~~~ 569 (930)
+.. ....+++|+..... ...++|+|...|+..- +.++++|+||+|.+.-.. ...+..-++.
T Consensus 168 F~~---~~I~~Lyg~S~~~f-------r~plvVaTtHQLlrFk--------~aFD~liIDEVDAFP~~~-d~~L~~Av~~ 228 (441)
T COG4098 168 FSN---CDIDLLYGDSDSYF-------RAPLVVATTHQLLRFK--------QAFDLLIIDEVDAFPFSD-DQSLQYAVKK 228 (441)
T ss_pred hcc---CCeeeEecCCchhc-------cccEEEEehHHHHHHH--------hhccEEEEeccccccccC-CHHHHHHHHH
Confidence 653 34567777754322 2689999988776543 348999999999765322 2333333333
Q ss_pred HhhcCccceEEEEccccCHHHHHHHhhhcCCCEEEEccCCCCcccCccceecCCCceEEEEEcCchhhH------HHHHH
Q psy15524 570 LKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRL------VALAS 643 (930)
Q Consensus 570 l~~~~~~~q~vl~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~l~~ 643 (930)
..+ ..--++.+|||.++..++-+...-..++.+..... .-|-.+........-..++ ..+..
T Consensus 229 ark--~~g~~IylTATp~k~l~r~~~~g~~~~~klp~RfH----------~~pLpvPkf~w~~~~~k~l~r~kl~~kl~~ 296 (441)
T COG4098 229 ARK--KEGATIYLTATPTKKLERKILKGNLRILKLPARFH----------GKPLPVPKFVWIGNWNKKLQRNKLPLKLKR 296 (441)
T ss_pred hhc--ccCceEEEecCChHHHHHHhhhCCeeEeecchhhc----------CCCCCCCceEEeccHHHHhhhccCCHHHHH
Confidence 222 35568999999998766544332222222211100 1111222233222222222 14555
Q ss_pred HHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHHHHHHHHHHhhcCCCcEEEeccccccc
Q psy15524 644 FILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARG 723 (930)
Q Consensus 644 ~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~v~~~F~~~~~~vLv~T~~~~~G 723 (930)
.+..... .+.+++||+++.+..+.+++.|+..++. ..+...|+.- ..|.+..++|++|+..+|++|.+++||
T Consensus 297 ~lekq~~-----~~~P~liF~p~I~~~eq~a~~lk~~~~~-~~i~~Vhs~d--~~R~EkV~~fR~G~~~lLiTTTILERG 368 (441)
T COG4098 297 WLEKQRK-----TGRPVLIFFPEIETMEQVAAALKKKLPK-ETIASVHSED--QHRKEKVEAFRDGKITLLITTTILERG 368 (441)
T ss_pred HHHHHHh-----cCCcEEEEecchHHHHHHHHHHHhhCCc-cceeeeeccC--ccHHHHHHHHHcCceEEEEEeehhhcc
Confidence 5554432 2789999999999999999999765543 3444557653 579999999999999999999999999
Q ss_pred cCCCCccEEEEecCC--CChhhHHhhhcccccCCC--CceEEEEeCcccHHHH
Q psy15524 724 LDLPLVDWIVQYTAP--SSSTDYVHRVGRTARVGH--EGSSLLFLIPSEVKLV 772 (930)
Q Consensus 724 lDip~v~~VI~~~~p--~s~~~y~qr~GRagR~g~--~g~~~~~~~~~e~~~~ 772 (930)
+.+|+|++.|...-. .+-+..+|..||+||.-. .|..+.|=......+.
T Consensus 369 VTfp~vdV~Vlgaeh~vfTesaLVQIaGRvGRs~~~PtGdv~FFH~G~skaM~ 421 (441)
T COG4098 369 VTFPNVDVFVLGAEHRVFTESALVQIAGRVGRSLERPTGDVLFFHYGKSKAMK 421 (441)
T ss_pred cccccceEEEecCCcccccHHHHHHHhhhccCCCcCCCCcEEEEeccchHHHH
Confidence 999999987765433 678899999999999754 4555554444444333
|
|
| >PRK13103 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.8e-23 Score=236.47 Aligned_cols=342 Identities=18% Similarity=0.179 Sum_probs=222.7
Q ss_pred HHHHHhcCCCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHH
Q psy15524 403 KKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQT 482 (930)
Q Consensus 403 ~~~l~~~~~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~ 482 (930)
.++..+..| |+|+-.|.+..+.-.+.-|+.+.||+|||+++.+|++-.... |..+.|++||..||.|-
T Consensus 72 rEa~~R~lG---m~~ydVQliGg~~Lh~G~iaEM~TGEGKTLvA~l~a~l~al~---------G~~VhvvT~ndyLA~RD 139 (913)
T PRK13103 72 REAGKRVMG---MRHFDVQLIGGMTLHEGKIAEMRTGEGKTLVGTLAVYLNALS---------GKGVHVVTVNDYLARRD 139 (913)
T ss_pred HHHHHHHhC---CCcchhHHHhhhHhccCccccccCCCCChHHHHHHHHHHHHc---------CCCEEEEeCCHHHHHHH
Confidence 334444455 566666667776666778999999999999999999877654 78899999999999999
Q ss_pred HHHHHHhhccCCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhH-HHhhhcc-----CCcccccceEEEEecchhhh-
Q psy15524 483 LEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRL-LDHCKHT-----ETLKFSKVEHLVLDEADRIL- 555 (930)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl-~~~l~~~-----~~~~~~~l~~lVlDEah~l~- 555 (930)
++.+..++..++ +.+++++++..... ++....++|+++|..-+ .|.|+.. .....+.+.++|+||+|.++
T Consensus 140 ~e~m~~l~~~lG-l~v~~i~~~~~~~e--rr~~Y~~dI~YGT~~e~gFDYLrD~~~~~~~~~vqr~l~~aIVDEvDsiLI 216 (913)
T PRK13103 140 ANWMRPLYEFLG-LSVGIVTPFQPPEE--KRAAYAADITYGTNNEFGFDYLRDNMAFSLDDKFQRELNFAVIDEVDSILI 216 (913)
T ss_pred HHHHHHHhcccC-CEEEEECCCCCHHH--HHHHhcCCEEEEcccccccchhhccceechhhhcccccceeEechhhheec
Confidence 999999998776 45667777654333 22334599999999886 3444332 12234789999999999976
Q ss_pred hc---------------CcHHHHHHHHHHHhhc----------------CccceEEEEccccCHHHHHHH----------
Q psy15524 556 DQ---------------GYERDIAEFLEILKKQ----------------KPQFQSILLSATLTPAVQRLA---------- 594 (930)
Q Consensus 556 ~~---------------g~~~~l~~i~~~l~~~----------------~~~~q~vl~SAT~~~~~~~l~---------- 594 (930)
|. .....+..++..|... ....+.+.+|-.-...++.+.
T Consensus 217 DEArtPLIISg~~~~~~~~y~~~~~~v~~L~~~~~~~~~~~~~~~~y~idek~~~v~LTe~G~~~~e~~~~~~~i~~~~~ 296 (913)
T PRK13103 217 DEARTPLIISGQAEDSSKLYIEINRLIPRLKQHIEEVEGQVTQEGHFTIDEKTRQVELNEAGHQFIEEMLTQAGLLAEGE 296 (913)
T ss_pred cccCCceeecCCCccchHHHHHHHHHHHHHHhhhhccccccCCCCCeEEEcCCCeeeechHHHHHHHHHhhhCCCcccch
Confidence 10 1223344455555221 011222222211000111110
Q ss_pred ------------------h---hhcCCCEEEE-------ccCC-----------------------------C-------
Q psy15524 595 ------------------G---MTLQNPIQID-------AADS-----------------------------T------- 610 (930)
Q Consensus 595 ------------------~---~~~~~~~~i~-------~~~~-----------------------------~------- 610 (930)
+ .+.++-.++- ++.. .
T Consensus 297 ~ly~~~~~~~~~~i~~AL~A~~lf~~d~dYiV~dg~V~IVDe~TGR~m~grrwsdGLHQaIEaKE~v~I~~e~~t~AsIT 376 (913)
T PRK13103 297 SLYSAHNLGLLTHVYAGLRAHKLFHRNVEYIVQDGQVLLIDEHTGRTMPGRRLSEGLHQAIEAKENLNIQAESQTLASTT 376 (913)
T ss_pred hccChhhhHHHHHHHHHHHHHHHHhcCCcEEEECCEEEEEECCCCCcCCCCccchHHHHHHHHHcCCCcCCCceeEEeeh
Confidence 0 0111111110 0000 0
Q ss_pred ---------------Cc----------ccCccceecCCCce------EEEEEcCchhhHHHHHHHHHhhccCCCcCCCce
Q psy15524 611 ---------------DI----------HNTTDSLVIPDSLK------QHFIVTPPKLRLVALASFILGKCQNVNEDEESK 659 (930)
Q Consensus 611 ---------------~~----------~~~~~~~~~~~~~~------~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~k 659 (930)
-. -...+...+|.... ...+......|..++...+..... .+.|
T Consensus 377 ~QnfFr~Y~kLsGMTGTa~te~~Ef~~iY~l~Vv~IPTnkP~~R~D~~d~vy~t~~eK~~Ai~~ei~~~~~-----~GrP 451 (913)
T PRK13103 377 FQNYFRLYNKLSGMTGTADTEAFEFRQIYGLDVVVIPPNKPLARKDFNDLVYLTAEEKYAAIITDIKECMA-----LGRP 451 (913)
T ss_pred HHHHHHhcchhccCCCCCHHHHHHHHHHhCCCEEECCCCCCcccccCCCeEEcCHHHHHHHHHHHHHHHHh-----CCCC
Confidence 00 00011122332221 112445556778887777765433 2889
Q ss_pred EEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHHHHHHHHHHhhcCCCcEEEeccccccccCCC------------
Q psy15524 660 MLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLP------------ 727 (930)
Q Consensus 660 ~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~v~~~F~~~~~~vLv~T~~~~~GlDip------------ 727 (930)
+||-+.|.+..+.++.+|... +++.-.|++.....+-..+-++-+.|. |.|||++|+||.||.
T Consensus 452 VLVGT~SVe~SE~ls~~L~~~---gi~h~VLNAk~~~~EA~IIa~AG~~Ga--VTIATNMAGRGTDIkLg~n~~~~~~~~ 526 (913)
T PRK13103 452 VLVGTATIETSEHMSNLLKKE---GIEHKVLNAKYHEKEAEIIAQAGRPGA--LTIATNMAGRGTDILLGGNWEVEVAAL 526 (913)
T ss_pred EEEEeCCHHHHHHHHHHHHHc---CCcHHHhccccchhHHHHHHcCCCCCc--EEEeccCCCCCCCEecCCchHHHHHhh
Confidence 999999999999999999975 777777788766555555555555554 999999999999993
Q ss_pred --------------------Ccc-----EEEEecCCCChhhHHhhhcccccCCCCceEEEEeCcccH
Q psy15524 728 --------------------LVD-----WIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPSEV 769 (930)
Q Consensus 728 --------------------~v~-----~VI~~~~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~e~ 769 (930)
.|. +||....|.|..--.|-.||+||.|.+|.+.+|++-++.
T Consensus 527 ~~~~~~~~~~~~~~~~~~~e~V~e~GGLhVIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSlED~ 593 (913)
T PRK13103 527 ENPTPEQIAQIKADWQKRHQQVIEAGGLHVIASERHESRRIDNQLRGRAGRQGDPGSSRFYLSLEDS 593 (913)
T ss_pred hhhhHHHHHHHHHHHHhHHHHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEEcCcH
Confidence 222 899999999999999999999999999999999996543
|
|
| >COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.7e-23 Score=246.72 Aligned_cols=172 Identities=26% Similarity=0.303 Sum_probs=144.2
Q ss_pred CCccCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHHh
Q psy15524 2 NITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLC 81 (930)
Q Consensus 2 g~~~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~ 81 (930)
|++.|+++|.+|+..+.+|+|++|++|||||||++|++|+++++.+.. ..++|+|+||+||+++|.++|+++.
T Consensus 67 g~~~lY~HQ~~A~~~~~~G~~vvVtTgTgSGKTe~FllPIld~~l~~~-------~a~AL~lYPtnALa~DQ~~rl~~~~ 139 (851)
T COG1205 67 GIERLYSHQVDALRLIREGRNVVVTTGTGSGKTESFLLPILDHLLRDP-------SARALLLYPTNALANDQAERLRELI 139 (851)
T ss_pred ccccccHHHHHHHHHHHCCCCEEEECCCCCchhHHHHHHHHHHHhhCc-------CccEEEEechhhhHhhHHHHHHHHH
Confidence 677799999999999999999999999999999999999999998732 3369999999999999999999999
Q ss_pred hhcC-CceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcCC---CccCCCccEEEEcccccccccCcHHHHHHH
Q psy15524 82 KSFT-WIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTE---TLKFSKVEHLVLDEADRILDQGYERDIAEF 157 (930)
Q Consensus 82 ~~~~-~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~---~~~l~~l~~vViDE~h~~~~~~~~~~~~~i 157 (930)
...+ .+....+.|+....+......+.++||++||.+|..++.+.. .+.++++++||+||+|.+- ..|+..+..+
T Consensus 140 ~~~~~~v~~~~y~Gdt~~~~r~~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElHtYr-Gv~GS~vA~l 218 (851)
T COG1205 140 SDLPGKVTFGRYTGDTPPEERRAIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHTYR-GVQGSEVALL 218 (851)
T ss_pred HhCCCcceeeeecCCCChHHHHHHHhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEecceecc-ccchhHHHHH
Confidence 8887 567777888887777767788899999999999988555432 2336889999999999873 3467777777
Q ss_pred HHHHhh----cCCCceEEEEEeecCCCc
Q psy15524 158 LEILKK----QKPQFQSILLSATLTPAT 181 (930)
Q Consensus 158 ~~~l~~----~~~~~~~i~lSAT~~~~~ 181 (930)
+++|.. .+.++|+|+.|||..+..
T Consensus 219 lRRL~~~~~~~~~~~q~i~~SAT~~np~ 246 (851)
T COG1205 219 LRRLLRRLRRYGSPLQIICTSATLANPG 246 (851)
T ss_pred HHHHHHHHhccCCCceEEEEeccccChH
Confidence 766654 345789999999997644
|
|
| >PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases | Back alignment and domain information |
|---|
Probab=99.91 E-value=4e-23 Score=204.51 Aligned_cols=162 Identities=38% Similarity=0.565 Sum_probs=137.7
Q ss_pred cHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHHhhhcCC
Q psy15524 7 TTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTW 86 (930)
Q Consensus 7 ~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~ 86 (930)
||+|.++++.+..|+++++.||||+|||++|++|+++.+... ...++++++|+++|+.|+.+.+.+++.. ..
T Consensus 1 t~~Q~~~~~~i~~~~~~li~aptGsGKT~~~~~~~l~~~~~~-------~~~~~lii~P~~~l~~q~~~~~~~~~~~-~~ 72 (169)
T PF00270_consen 1 TPLQQEAIEAIISGKNVLISAPTGSGKTLAYILPALNRLQEG-------KDARVLIIVPTRALAEQQFERLRKFFSN-TN 72 (169)
T ss_dssp -HHHHHHHHHHHTTSEEEEECSTTSSHHHHHHHHHHHHHHTT-------SSSEEEEEESSHHHHHHHHHHHHHHTTT-TT
T ss_pred CHHHHHHHHHHHcCCCEEEECCCCCccHHHHHHHHHhhhccC-------CCceEEEEeecccccccccccccccccc-cc
Confidence 799999999999999999999999999999999999988763 2347999999999999999999999876 33
Q ss_pred ceeEEeeCCCchH-HHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCcHHHHHHHHHHHhhcC
Q psy15524 87 IVPSWLTGGEKMK-SEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQK 165 (930)
Q Consensus 87 ~~~~~~~g~~~~~-~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~~~~~~~i~~~l~~~~ 165 (930)
..+..++++.... .....+..+++|+|+||+++.+.+..... .+.++++|||||+|.+.++.++..+..++..+....
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~-~~~~~~~iViDE~h~l~~~~~~~~~~~i~~~~~~~~ 151 (169)
T PF00270_consen 73 VRVVLLHGGQSISEDQREVLSNQADILVTTPEQLLDLISNGKI-NISRLSLIVIDEAHHLSDETFRAMLKSILRRLKRFK 151 (169)
T ss_dssp SSEEEESTTSCHHHHHHHHHHTTSSEEEEEHHHHHHHHHTTSS-TGTTESEEEEETHHHHHHTTHHHHHHHHHHHSHTTT
T ss_pred cccccccccccccccccccccccccccccCcchhhcccccccc-ccccceeeccCcccccccccHHHHHHHHHHHhcCCC
Confidence 6677778877655 45556667799999999999999887333 667799999999999999988888888888876544
Q ss_pred CCceEEEEEeecC
Q psy15524 166 PQFQSILLSATLT 178 (930)
Q Consensus 166 ~~~~~i~lSAT~~ 178 (930)
+.+++++|||++
T Consensus 152 -~~~~i~~SAT~~ 163 (169)
T PF00270_consen 152 -NIQIILLSATLP 163 (169)
T ss_dssp -TSEEEEEESSST
T ss_pred -CCcEEEEeeCCC
Confidence 578999999997
|
Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A .... |
| >PRK01172 ski2-like helicase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=6e-23 Score=246.33 Aligned_cols=162 Identities=22% Similarity=0.312 Sum_probs=136.4
Q ss_pred CCccCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHHh
Q psy15524 2 NITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLC 81 (930)
Q Consensus 2 g~~~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~ 81 (930)
||+ |+++|.++++.+.+|+|++++||||||||+++.++++..+.. +.++||++|+++|+.|+++.+.++.
T Consensus 20 ~~~-l~~~Q~~ai~~l~~~~nvlv~apTGSGKTl~a~lail~~l~~---------~~k~v~i~P~raLa~q~~~~~~~l~ 89 (674)
T PRK01172 20 DFE-LYDHQRMAIEQLRKGENVIVSVPTAAGKTLIAYSAIYETFLA---------GLKSIYIVPLRSLAMEKYEELSRLR 89 (674)
T ss_pred CCC-CCHHHHHHHHHHhcCCcEEEECCCCchHHHHHHHHHHHHHHh---------CCcEEEEechHHHHHHHHHHHHHHh
Confidence 665 999999999999999999999999999999999999988754 4569999999999999999998764
Q ss_pred hhcCCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCcHHHHHHHHHHH
Q psy15524 82 KSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEIL 161 (930)
Q Consensus 82 ~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~~~~~~~i~~~l 161 (930)
. .+ ..+....|+...... ....++|+|+|||++..++.+ ....+.++++|||||+|++.+.++++.++.++..+
T Consensus 90 ~-~g-~~v~~~~G~~~~~~~---~~~~~dIiv~Tpek~~~l~~~-~~~~l~~v~lvViDEaH~l~d~~rg~~le~ll~~~ 163 (674)
T PRK01172 90 S-LG-MRVKISIGDYDDPPD---FIKRYDVVILTSEKADSLIHH-DPYIINDVGLIVADEIHIIGDEDRGPTLETVLSSA 163 (674)
T ss_pred h-cC-CeEEEEeCCCCCChh---hhccCCEEEECHHHHHHHHhC-ChhHHhhcCEEEEecchhccCCCccHHHHHHHHHH
Confidence 2 33 556666666543221 224679999999999888765 33457899999999999999999999999999988
Q ss_pred hhcCCCceEEEEEeecCC
Q psy15524 162 KKQKPQFQSILLSATLTP 179 (930)
Q Consensus 162 ~~~~~~~~~i~lSAT~~~ 179 (930)
+..++++|++++|||+++
T Consensus 164 ~~~~~~~riI~lSATl~n 181 (674)
T PRK01172 164 RYVNPDARILALSATVSN 181 (674)
T ss_pred HhcCcCCcEEEEeCccCC
Confidence 887888999999999976
|
|
| >PRK12326 preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.90 E-value=9.6e-22 Score=221.41 Aligned_cols=343 Identities=20% Similarity=0.208 Sum_probs=224.4
Q ss_pred HHHHHHhcCCCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHH
Q psy15524 402 MKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQ 481 (930)
Q Consensus 402 ~~~~l~~~~~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q 481 (930)
+.++..+.+|+ .++++|--..-.+++|+ ++++.||+|||+++.+|++..... |..+.|++|+..||.|
T Consensus 67 vREa~~R~lg~-r~ydvQlig~l~Ll~G~--VaEM~TGEGKTLvA~l~a~l~AL~---------G~~VhvvT~NdyLA~R 134 (764)
T PRK12326 67 AREAAERTLGL-RPFDVQLLGALRLLAGD--VIEMATGEGKTLAGAIAAAGYALQ---------GRRVHVITVNDYLARR 134 (764)
T ss_pred HHHHHHHHcCC-CcchHHHHHHHHHhCCC--cccccCCCCHHHHHHHHHHHHHHc---------CCCeEEEcCCHHHHHH
Confidence 34444445565 56777877777777664 889999999999999999877654 7889999999999999
Q ss_pred HHHHHHHhhccCCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhH-HHhhhcc-----CCcccccceEEEEecchhhh
Q psy15524 482 TLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRL-LDHCKHT-----ETLKFSKVEHLVLDEADRIL 555 (930)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl-~~~l~~~-----~~~~~~~l~~lVlDEah~l~ 555 (930)
-++.+..++..++ +.++++.++.... + ++....++|+++|...+ .|.|+.. .....+.+.+.|+||+|.++
T Consensus 135 Dae~m~~ly~~LG-Lsvg~i~~~~~~~-e-rr~aY~~DItYgTn~e~gFDyLRDnm~~~~~~~v~R~~~faIVDEvDSiL 211 (764)
T PRK12326 135 DAEWMGPLYEALG-LTVGWITEESTPE-E-RRAAYACDVTYASVNEIGFDVLRDQLVTDVADLVSPNPDVAIIDEADSVL 211 (764)
T ss_pred HHHHHHHHHHhcC-CEEEEECCCCCHH-H-HHHHHcCCCEEcCCcccccccchhhhccChHhhcCCccceeeecchhhhe
Confidence 9999999998776 4566777765533 2 33345799999999876 3333321 22235678999999999876
Q ss_pred h-c--------------CcHHHHHHHHHHHhhc-----CccceEEEEccccCHHHHH------------------H----
Q psy15524 556 D-Q--------------GYERDIAEFLEILKKQ-----KPQFQSILLSATLTPAVQR------------------L---- 593 (930)
Q Consensus 556 ~-~--------------g~~~~l~~i~~~l~~~-----~~~~q~vl~SAT~~~~~~~------------------l---- 593 (930)
= . .....+..+...|... ....+.+.+|..=-..++. .
T Consensus 212 IDeArtPLiISg~~~~~~~y~~~~~~v~~L~~~~dy~ide~~k~v~LTe~G~~~~e~~l~~~~ly~~~~~~~~~~~i~~A 291 (764)
T PRK12326 212 VDEALVPLVLAGSTPGEAPRGEIAELVRRLREGKDYEIDDDGRNVHLTDKGARKVEKALGGIDLYSEEHVGTTLTQVNVA 291 (764)
T ss_pred eccccCceeeeCCCcchhHHHHHHHHHHhcCcCCcEEEEcCCCeeEecHHHHHHHHHHcCCccccCcchhHHHHHHHHHH
Confidence 1 0 1223334444444321 0122334333210000000 0
Q ss_pred --Hhh-hcCCCEEEE-------ccCC-----------------------------C----------------------C-
Q psy15524 594 --AGM-TLQNPIQID-------AADS-----------------------------T----------------------D- 611 (930)
Q Consensus 594 --~~~-~~~~~~~i~-------~~~~-----------------------------~----------------------~- 611 (930)
+.. +.++-.++- +... . -
T Consensus 292 L~A~~l~~~d~dYiV~dgeV~iVDe~TGRvm~grrwsdGLHQaIEaKE~v~i~~e~~t~AsIT~QnfFr~Y~kLsGMTGT 371 (764)
T PRK12326 292 LHAHALLQRDVHYIVRDGKVHLINASRGRIAQLQRWPDGLQAAVEAKEGLETTETGEVLDTITVQALIGRYPTVCGMTGT 371 (764)
T ss_pred HHHHHHHhcCCcEEEECCEEEEEECCCCCcCCCCccChHHHHHHHHHcCCCCCCCceeeehhhHHHHHHhcchheeecCC
Confidence 000 111111110 0000 0 0
Q ss_pred c---------ccCccceecCCCceEE------EEEcCchhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHH
Q psy15524 612 I---------HNTTDSLVIPDSLKQH------FIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTEL 676 (930)
Q Consensus 612 ~---------~~~~~~~~~~~~~~~~------~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~ 676 (930)
. -...+...+|...... .+......|..++...+..... .+.|+||.+.|.+.++.++++
T Consensus 372 a~t~~~Ef~~iY~l~Vv~IPtnkp~~R~d~~d~iy~t~~~k~~Aii~ei~~~~~-----~GrPVLVgt~sI~~SE~ls~~ 446 (764)
T PRK12326 372 AVAAGEQLRQFYDLGVSVIPPNKPNIREDEADRVYATAAEKNDAIVEHIAEVHE-----TGQPVLVGTHDVAESEELAER 446 (764)
T ss_pred ChhHHHHHHHHhCCcEEECCCCCCceeecCCCceEeCHHHHHHHHHHHHHHHHH-----cCCCEEEEeCCHHHHHHHHHH
Confidence 0 0001122333322211 2334455677777777765433 288999999999999999999
Q ss_pred HhhhcCCCceEEEecCCCCHHHHHHHHHHhhcCCCcEEEeccccccccCCC----------Cc-----cEEEEecCCCCh
Q psy15524 677 LSTVLGENIAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLP----------LV-----DWIVQYTAPSSS 741 (930)
Q Consensus 677 l~~~~~~~~~~~~lhg~~~~~~R~~v~~~F~~~~~~vLv~T~~~~~GlDip----------~v-----~~VI~~~~p~s~ 741 (930)
|.+. +++...|++.-...+-..+-++-+.|. |.|||++|+||.||. .| -+||....|.|.
T Consensus 447 L~~~---gI~h~vLNAk~~~~EA~IIa~AG~~ga--VTIATNMAGRGTDIkLg~~~~~~~~~V~~~GGLhVIgTerheSr 521 (764)
T PRK12326 447 LRAA---GVPAVVLNAKNDAEEARIIAEAGKYGA--VTVSTQMAGRGTDIRLGGSDEADRDRVAELGGLHVIGTGRHRSE 521 (764)
T ss_pred HHhC---CCcceeeccCchHhHHHHHHhcCCCCc--EEEEecCCCCccCeecCCCcccchHHHHHcCCcEEEeccCCchH
Confidence 9985 788888898866655555555555555 999999999999995 22 289999999999
Q ss_pred hhHHhhhcccccCCCCceEEEEeCcccH
Q psy15524 742 TDYVHRVGRTARVGHEGSSLLFLIPSEV 769 (930)
Q Consensus 742 ~~y~qr~GRagR~g~~g~~~~~~~~~e~ 769 (930)
.--.|-.||+||.|.+|.+.+|++-++.
T Consensus 522 RID~QLrGRaGRQGDpGss~f~lSleDd 549 (764)
T PRK12326 522 RLDNQLRGRAGRQGDPGSSVFFVSLEDD 549 (764)
T ss_pred HHHHHHhcccccCCCCCceeEEEEcchh
Confidence 9999999999999999999999986554
|
|
| >KOG0344|consensus | Back alignment and domain information |
|---|
Probab=99.90 E-value=1e-23 Score=227.30 Aligned_cols=250 Identities=26% Similarity=0.370 Sum_probs=186.9
Q ss_pred CCCccCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHH
Q psy15524 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKL 80 (930)
Q Consensus 1 ~g~~~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~ 80 (930)
.||..|+|+|++|+|.++.++|++.|||||||||++|.+|+++++..... .....|.+++|+.||++|+.|++.++.++
T Consensus 154 ~~F~~Pt~iq~~aipvfl~~r~~lAcapTGsgKtlaf~~Pil~~L~~~~~-~~~~~gl~a~Il~ptreLa~Qi~re~~k~ 232 (593)
T KOG0344|consen 154 LGFDEPTPIQKQAIPVFLEKRDVLACAPTGSGKTLAFNLPILQHLKDLSQ-EKHKVGLRALILSPTRELAAQIYREMRKY 232 (593)
T ss_pred CCCCCCCcccchhhhhhhcccceEEeccCCCcchhhhhhHHHHHHHHhhc-ccCccceEEEEecchHHHHHHHHHHHHhc
Confidence 48999999999999999999999999999999999999999999976543 12345889999999999999999999999
Q ss_pred h--hhcCCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcC-CCccCCCccEEEEccccccccc-CcHHHHHH
Q psy15524 81 C--KSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHT-ETLKFSKVEHLVLDEADRILDQ-GYERDIAE 156 (930)
Q Consensus 81 ~--~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~-~~~~l~~l~~vViDE~h~~~~~-~~~~~~~~ 156 (930)
. .......+..-+...............+||+++||.++...+... ..+.+..+.++|+||+|.+++. .|..++..
T Consensus 233 ~~~~~t~~~a~~~~~~~~~~qk~a~~~~~k~dili~TP~ri~~~~~~~~~~idl~~V~~lV~dEaD~lfe~~~f~~Qla~ 312 (593)
T KOG0344|consen 233 SIDEGTSLRAAQFSKPAYPSQKPAFLSDEKYDILISTPMRIVGLLGLGKLNIDLSKVEWLVVDEADLLFEPEFFVEQLAD 312 (593)
T ss_pred CCCCCCchhhhhcccccchhhccchhHHHHHHHHhcCHHHHHHHhcCCCccchhheeeeEeechHHhhhChhhHHHHHHH
Confidence 8 433322222222222222222333445899999999998888653 2367899999999999999998 88888888
Q ss_pred HHHHHhhcCCCceEEEEEeecCCCccccccccccccccccchhhhhhhhhhhccchhhHHHHHHHHhhcCcCceEEEEec
Q psy15524 157 FLEILKKQKPQFQSILLSATLTPATCWCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSA 236 (930)
Q Consensus 157 i~~~l~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~de~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~sa 236 (930)
|+..+.. ++++ .-+|||
T Consensus 313 I~sac~s--~~i~-------------------------------------------------------------~a~FSa 329 (593)
T KOG0344|consen 313 IYSACQS--PDIR-------------------------------------------------------------VALFSA 329 (593)
T ss_pred HHHHhcC--cchh-------------------------------------------------------------hhhhhc
Confidence 7766643 2333 345566
Q ss_pred ccchHHHHhhhccccCCeeeccCCcccccCCCcccccCCCceeEEEEcC-cchhHHHHHHHHhhhccccccCCcceEEEE
Q psy15524 237 TLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTP-PKLRLVALASFILGKCQNVNEDEESKMLVF 315 (930)
Q Consensus 237 t~~~~~~~l~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~k~~~l~~~l~~~~~~~~~~~~~~~iVF 315 (930)
|++..++..+...+.++..+.+...+. ....+.|...+|. +..|+.++..++. ..-..|++||
T Consensus 330 t~~~~VEE~~~~i~~~~~~vivg~~~s---------a~~~V~QelvF~gse~~K~lA~rq~v~-------~g~~PP~lIf 393 (593)
T KOG0344|consen 330 TISVYVEEWAELIKSDLKRVIVGLRNS---------ANETVDQELVFCGSEKGKLLALRQLVA-------SGFKPPVLIF 393 (593)
T ss_pred cccHHHHHHHHHhhccceeEEEecchh---------HhhhhhhhheeeecchhHHHHHHHHHh-------ccCCCCeEEE
Confidence 666666666666666665554443331 1345777777775 4679999999993 4466799999
Q ss_pred EecccchhhhHHHHh
Q psy15524 316 MATQDMADYHTELLS 330 (930)
Q Consensus 316 ~~s~~~~~~l~~~L~ 330 (930)
+.+.++|..+...|.
T Consensus 394 VQs~eRak~L~~~L~ 408 (593)
T KOG0344|consen 394 VQSKERAKQLFEELE 408 (593)
T ss_pred EecHHHHHHHHHHhh
Confidence 999999999999996
|
|
| >COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.7e-23 Score=233.22 Aligned_cols=161 Identities=24% Similarity=0.301 Sum_probs=129.6
Q ss_pred CCCccCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHH
Q psy15524 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKL 80 (930)
Q Consensus 1 ~g~~~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~ 80 (930)
|||..+++-|+++|..+++|+|+++.+|||+||++||.+|++-. .+-+|||+|..+|+.+|++.++..
T Consensus 13 fGy~~FR~gQ~evI~~~l~g~d~lvvmPTGgGKSlCyQiPAll~------------~G~TLVVSPLiSLM~DQV~~l~~~ 80 (590)
T COG0514 13 FGYASFRPGQQEIIDALLSGKDTLVVMPTGGGKSLCYQIPALLL------------EGLTLVVSPLISLMKDQVDQLEAA 80 (590)
T ss_pred hCccccCCCHHHHHHHHHcCCcEEEEccCCCCcchHhhhHHHhc------------CCCEEEECchHHHHHHHHHHHHHc
Confidence 69999999999999999999999999999999999999999743 225999999999999999999887
Q ss_pred hhhcCCceeEEeeCCCchHHHH----HHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccC--cHHHH
Q psy15524 81 CKSFTWIVPSWLTGGEKMKSEK----ARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQG--YERDI 154 (930)
Q Consensus 81 ~~~~~~~~~~~~~g~~~~~~~~----~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~--~~~~~ 154 (930)
+ +....+++..+..+.. ....+..++++-+||++...-.. ..+.-..+.++|||||||+++|| |++++
T Consensus 81 G-----i~A~~lnS~l~~~e~~~v~~~l~~g~~klLyisPErl~~~~f~-~~L~~~~i~l~vIDEAHCiSqWGhdFRP~Y 154 (590)
T COG0514 81 G-----IRAAYLNSTLSREERQQVLNQLKSGQLKLLYISPERLMSPRFL-ELLKRLPISLVAIDEAHCISQWGHDFRPDY 154 (590)
T ss_pred C-----ceeehhhcccCHHHHHHHHHHHhcCceeEEEECchhhcChHHH-HHHHhCCCceEEechHHHHhhcCCccCHhH
Confidence 6 4444555554433332 23334589999999998654322 22335678999999999999998 99999
Q ss_pred HHHHHHHhhcCCCceEEEEEeecCCC
Q psy15524 155 AEFLEILKKQKPQFQSILLSATLTPA 180 (930)
Q Consensus 155 ~~i~~~l~~~~~~~~~i~lSAT~~~~ 180 (930)
.++-......+ ++++++||||.++.
T Consensus 155 ~~lg~l~~~~~-~~p~~AlTATA~~~ 179 (590)
T COG0514 155 RRLGRLRAGLP-NPPVLALTATATPR 179 (590)
T ss_pred HHHHHHHhhCC-CCCEEEEeCCCChH
Confidence 98877665554 88999999999763
|
|
| >TIGR01054 rgy reverse gyrase | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.6e-22 Score=245.07 Aligned_cols=254 Identities=17% Similarity=0.222 Sum_probs=167.7
Q ss_pred CCccCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHHh
Q psy15524 2 NITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLC 81 (930)
Q Consensus 2 g~~~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~ 81 (930)
|+ .|+++|+.+++.++.|+|++++||||+|||. |.+|+...+.. .+.++|||+||++|+.|+++.+++++
T Consensus 76 g~-~p~~iQ~~~i~~il~G~d~vi~ApTGsGKT~-f~l~~~~~l~~--------~g~~vLIL~PTreLa~Qi~~~l~~l~ 145 (1171)
T TIGR01054 76 GS-EPWSIQKMWAKRVLRGDSFAIIAPTGVGKTT-FGLAMSLFLAK--------KGKRCYIILPTTLLVIQVAEKISSLA 145 (1171)
T ss_pred CC-CCcHHHHHHHHHHhCCCeEEEECCCCCCHHH-HHHHHHHHHHh--------cCCeEEEEeCHHHHHHHHHHHHHHHH
Confidence 44 6999999999999999999999999999997 66777666543 25679999999999999999999998
Q ss_pred hhcCCce--eEEeeCCCchHHHH---HHhc-CCCcEEEEChHHHHHHHhcCCCccCCCccEEEEccccccccc-------
Q psy15524 82 KSFTWIV--PSWLTGGEKMKSEK---ARIR-KGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQ------- 148 (930)
Q Consensus 82 ~~~~~~~--~~~~~g~~~~~~~~---~~l~-~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~------- 148 (930)
...+... +..++|+.....+. ..+. ++++|+|+||++|.+++... .. +++++||||||+|+++
T Consensus 146 ~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~l---~~-~~~~iVvDEaD~~L~~~k~vd~i 221 (1171)
T TIGR01054 146 EKAGVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDEL---GP-KFDFIFVDDVDALLKASKNVDKL 221 (1171)
T ss_pred HhcCCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHHh---cC-CCCEEEEeChHhhhhccccHHHH
Confidence 7654222 33466776655432 3334 35999999999999887641 12 8999999999999985
Q ss_pred ----CcHHH-HHHHHHHHhhcCCCceEEEEEeecCCCccccccccccccccccchhhhhhhhhhhccchhhHHHHHHHHh
Q psy15524 149 ----GYERD-IAEFLEILKKQKPQFQSILLSATLTPATCWCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILK 223 (930)
Q Consensus 149 ----~~~~~-~~~i~~~l~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~de~~~~~~~~~~~~~~~~~~~~~ 223 (930)
||.++ +..++..++.... ....+.++.....+.
T Consensus 222 l~llGF~~e~i~~il~~~~~~~~------------------------------------------~~~~~~~~~~~~~~~ 259 (1171)
T TIGR01054 222 LKLLGFSEELIEKAWKLIRLRLK------------------------------------------LYRALHAKKRLELLE 259 (1171)
T ss_pred HHHcCCCHHHHHHHHHHhhhccc------------------------------------------cchHHHHHHHHHHHH
Confidence 44432 3333333221100 000112222222222
Q ss_pred hcCcCce--EEEEecc-cchHHHHhhhccccCCeeeccCCcccccCCCcccccCCCceeEEEEcCcchhHHHHHHHHhhh
Q psy15524 224 KQKPQFQ--SVLLSAT-LTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALASFILGK 300 (930)
Q Consensus 224 ~~~~~~q--~~~~sat-~~~~~~~l~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~ 300 (930)
..+..+| .++|||| .+..+.. .++++...+.+.... ....++.+.|..+.. +...|..++..
T Consensus 260 ~~~~~~q~~li~~SAT~~p~~~~~---~l~r~ll~~~v~~~~---------~~~r~I~~~~~~~~~--~~~~L~~ll~~- 324 (1171)
T TIGR01054 260 AIPGKKRGCLIVSSATGRPRGKRA---KLFRELLGFEVGGGS---------DTLRNVVDVYVEDED--LKETLLEIVKK- 324 (1171)
T ss_pred hhhhccCcEEEEEeCCCCccccHH---HHcccccceEecCcc---------ccccceEEEEEeccc--HHHHHHHHHHH-
Confidence 2222334 6779999 4544332 234455555443322 234567787765443 24456666622
Q ss_pred ccccccCCcceEEEEEecc---cchhhhHHHHhhhh
Q psy15524 301 CQNVNEDEESKMLVFMATQ---DMADYHTELLSTKK 333 (930)
Q Consensus 301 ~~~~~~~~~~~~iVF~~s~---~~~~~l~~~L~~~~ 333 (930)
.+.++||||+++ +.|+.++..|+++|
T Consensus 325 -------l~~~~IVFv~t~~~~~~a~~l~~~L~~~g 353 (1171)
T TIGR01054 325 -------LGTGGIVYVSIDYGKEKAEEIAEFLENHG 353 (1171)
T ss_pred -------cCCCEEEEEeccccHHHHHHHHHHHHhCC
Confidence 245799999999 99999999998765
|
Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA. |
| >COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.2e-21 Score=226.34 Aligned_cols=309 Identities=21% Similarity=0.267 Sum_probs=213.8
Q ss_pred HhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHHHHhhccCCCcceEE
Q psy15524 421 LSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSW 500 (930)
Q Consensus 421 ~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~ 500 (930)
+.+.++-+++-+++.+|||||||...-.-+++... ..+..+.+.-|.|--|.-+++.+.+.+.....-.+++
T Consensus 57 ~i~~ai~~~~vvii~getGsGKTTqlP~~lle~g~--------~~~g~I~~tQPRRlAArsvA~RvAeel~~~~G~~VGY 128 (845)
T COG1643 57 EILKAIEQNQVVIIVGETGSGKTTQLPQFLLEEGL--------GIAGKIGCTQPRRLAARSVAERVAEELGEKLGETVGY 128 (845)
T ss_pred HHHHHHHhCCEEEEeCCCCCChHHHHHHHHHhhhc--------ccCCeEEecCchHHHHHHHHHHHHHHhCCCcCceeeE
Confidence 34445556677999999999999864444444332 2344567777998888888877776665433344555
Q ss_pred EeCCCchHHHHHHHhcCCcEEEECchhHHHhhhccCCcccccceEEEEecchhhhhcCcHH-H-HHHHHHHHhhcCccce
Q psy15524 501 LTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYER-D-IAEFLEILKKQKPQFQ 578 (930)
Q Consensus 501 ~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~l~~~g~~~-~-l~~i~~~l~~~~~~~q 578 (930)
.+-.++..+ ....|-++|.|.|+..+.+. ..++.+++||+||||. ..... . +..+...+...+++.+
T Consensus 129 ~iRfe~~~s------~~Trik~mTdGiLlrei~~D--~~Ls~ys~vIiDEaHE---RSl~tDilLgllk~~~~~rr~DLK 197 (845)
T COG1643 129 SIRFESKVS------PRTRIKVMTDGILLREIQND--PLLSGYSVVIIDEAHE---RSLNTDILLGLLKDLLARRRDDLK 197 (845)
T ss_pred EEEeeccCC------CCceeEEeccHHHHHHHhhC--cccccCCEEEEcchhh---hhHHHHHHHHHHHHHHhhcCCCce
Confidence 555544332 24578899999999998863 3478999999999993 22221 1 1222233444455799
Q ss_pred EEEEccccCHHHHHHHhhhcCCCEEEEccCCCCcccCccceecCCCceEEEEEcC-chh-hHHHHHHHHHhhccCCCcCC
Q psy15524 579 SILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTP-PKL-RLVALASFILGKCQNVNEDE 656 (930)
Q Consensus 579 ~vl~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~l~~~l~~~~~~~~~~~ 656 (930)
++.+|||+.. +++.. ++.+...+.+.+.. . .+...|.... .+. -...+...+..+ ..+.
T Consensus 198 iIimSATld~--~rfs~-~f~~apvi~i~GR~----------f--PVei~Y~~~~~~d~~l~~ai~~~v~~~----~~~~ 258 (845)
T COG1643 198 LIIMSATLDA--ERFSA-YFGNAPVIEIEGRT----------Y--PVEIRYLPEAEADYILLDAIVAAVDIH----LREG 258 (845)
T ss_pred EEEEecccCH--HHHHH-HcCCCCEEEecCCc----------c--ceEEEecCCCCcchhHHHHHHHHHHHh----ccCC
Confidence 9999999975 33433 44443333333221 1 1222331111 222 233344444333 2334
Q ss_pred CceEEEEecchhhHHHHHHHHhh-hcCCCceEEEecCCCCHHHHHHHHHHhhcCCCcEEEeccccccccCCCCccEEEEe
Q psy15524 657 ESKMLVFMATQDMADYHTELLST-VLGENIAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQY 735 (930)
Q Consensus 657 ~~k~iVF~~s~~~~~~~~~~l~~-~~~~~~~~~~lhg~~~~~~R~~v~~~F~~~~~~vLv~T~~~~~GlDip~v~~VI~~ 735 (930)
.+-++||.+..++.+..++.|.+ .++..+.++.+||.|+.+++.++++--..|+.+|++||++++.+|.||+|.+||..
T Consensus 259 ~GdILvFLpG~~EI~~~~~~L~~~~l~~~~~i~PLy~~L~~~eQ~rvF~p~~~~~RKVVlATNIAETSLTI~gIr~VIDs 338 (845)
T COG1643 259 SGSILVFLPGQREIERTAEWLEKAELGDDLEILPLYGALSAEEQVRVFEPAPGGKRKVVLATNIAETSLTIPGIRYVIDS 338 (845)
T ss_pred CCCEEEECCcHHHHHHHHHHHHhccccCCcEEeeccccCCHHHHHhhcCCCCCCcceEEEEccccccceeeCCeEEEecC
Confidence 78999999999999999999987 44457899999999999999999998888888899999999999999999999975
Q ss_pred c------------------CCCChhhHHhhhcccccCCCCceEEEEeCccc
Q psy15524 736 T------------------APSSSTDYVHRVGRTARVGHEGSSLLFLIPSE 768 (930)
Q Consensus 736 ~------------------~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~e 768 (930)
+ .|-|-.+..||.|||||.+ +|.|+-+++.++
T Consensus 339 G~ak~~~y~~~~g~~~L~~~~ISqAsA~QRaGRAGR~~-pGicyRLyse~~ 388 (845)
T COG1643 339 GLAKEKRYDPRTGLTRLETEPISKASADQRAGRAGRTG-PGICYRLYSEED 388 (845)
T ss_pred CcccccccccccCceeeeEEEechhhhhhhccccccCC-CceEEEecCHHH
Confidence 5 3347788999999999986 899999998643
|
|
| >PRK12903 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.4e-21 Score=218.12 Aligned_cols=342 Identities=18% Similarity=0.163 Sum_probs=216.7
Q ss_pred HHHHHhcCCCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHH
Q psy15524 403 KKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQT 482 (930)
Q Consensus 403 ~~~l~~~~~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~ 482 (930)
.++..+.+|. .++++|--.--.+ ...-|+.+.||-||||++.+|++-..+. |..|-|++.+-.||..-
T Consensus 68 REA~~R~lG~-r~ydVQliGglvL--h~G~IAEMkTGEGKTLvAtLpayLnAL~---------GkgVhVVTvNdYLA~RD 135 (925)
T PRK12903 68 REATKRVLGK-RPYDVQIIGGIIL--DLGSVAEMKTGEGKTITSIAPVYLNALT---------GKGVIVSTVNEYLAERD 135 (925)
T ss_pred HHHHHHHhCC-CcCchHHHHHHHH--hcCCeeeecCCCCccHHHHHHHHHHHhc---------CCceEEEecchhhhhhh
Confidence 3444444454 4555565444344 3445899999999999999999766544 78899999999999999
Q ss_pred HHHHHHhhccCCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhH-HHhhhcc-----CCcccccceEEEEecchhhh-
Q psy15524 483 LEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRL-LDHCKHT-----ETLKFSKVEHLVLDEADRIL- 555 (930)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl-~~~l~~~-----~~~~~~~l~~lVlDEah~l~- 555 (930)
++.+..++..++. .++++..+... ..++....++|+++|...| .|.|+.. .....+.+.+.|+||+|.++
T Consensus 136 ae~mg~vy~fLGL-svG~i~~~~~~--~~rr~aY~~DItYgTn~E~gFDYLRDnm~~~~~~~vqR~~~faIVDEVDSILI 212 (925)
T PRK12903 136 AEEMGKVFNFLGL-SVGINKANMDP--NLKREAYACDITYSVHSELGFDYLRDNMVSSKEEKVQRGLNFCLIDEVDSILI 212 (925)
T ss_pred HHHHHHHHHHhCC-ceeeeCCCCCh--HHHHHhccCCCeeecCcccchhhhhhcccccHHHhcCcccceeeeccchheee
Confidence 9999999987774 45555555433 3344456799999999876 4455432 12235778999999999876
Q ss_pred hc---------------CcHHHHHHHHHHHhhc----CccceEEEEccccCHHHHHHH-----------------hh---
Q psy15524 556 DQ---------------GYERDIAEFLEILKKQ----KPQFQSILLSATLTPAVQRLA-----------------GM--- 596 (930)
Q Consensus 556 ~~---------------g~~~~l~~i~~~l~~~----~~~~q~vl~SAT~~~~~~~l~-----------------~~--- 596 (930)
|. .+...+..++..|... ....+.+.++..-...++.+. ..
T Consensus 213 DEArTPLIISg~~~~~~~~Y~~~~~~v~~L~~~dy~iDek~k~v~LTe~G~~~~E~~l~i~nLy~~~n~~l~h~i~~AL~ 292 (925)
T PRK12903 213 DEAKTPLIISGGQSNDSNLYLAADQFVRTLKEDDYKIDEETKAISLTEKGIKKANKFFKLKNLYDIENSELVHRIQNALR 292 (925)
T ss_pred cccCCcccccCCCccchHHHHHHHHHHHhccccceEEecccceEEECHhHHHHHHHHcCCCcccChhhHHHHHHHHHHHH
Confidence 11 1223333444443310 112233444432111111110 00
Q ss_pred ----hcCCCEEE-------EccCC---------------------------------------------------CCc--
Q psy15524 597 ----TLQNPIQI-------DAADS---------------------------------------------------TDI-- 612 (930)
Q Consensus 597 ----~~~~~~~i-------~~~~~---------------------------------------------------~~~-- 612 (930)
+.++-.++ -+... .-.
T Consensus 293 A~~lf~rd~dYiV~dg~V~IVDefTGR~m~gRrwsdGLHQaIEAKEgv~I~~e~~TlAsIT~QnfFr~Y~kLsGMTGTA~ 372 (925)
T PRK12903 293 AHKVMKEDVEYIVRDGKIELVDQFTGRIMEGRSYSEGLQQAIQAKEMVEIEPETKTLATITYQNFFRLFKKLSGMTGTAK 372 (925)
T ss_pred HHHHHhcCCceEEECCEEEEEECCCCCCCCCCccchHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhcchhhccCCCCH
Confidence 01111110 00000 000
Q ss_pred --------ccCccceecCCCceEE------EEEcCchhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHh
Q psy15524 613 --------HNTTDSLVIPDSLKQH------FIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLS 678 (930)
Q Consensus 613 --------~~~~~~~~~~~~~~~~------~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~ 678 (930)
-...+...+|...... .++.....|+.++...+..... .++|+||.|.|.+.++.++.+|.
T Consensus 373 te~~Ef~~iY~l~Vv~IPTnkP~~R~D~~d~iy~t~~~K~~Aii~ei~~~~~-----~gqPVLVgT~SIe~SE~ls~~L~ 447 (925)
T PRK12903 373 TEEQEFIDIYNMRVNVVPTNKPVIRKDEPDSIFGTKHAKWKAVVKEVKRVHK-----KGQPILIGTAQVEDSETLHELLL 447 (925)
T ss_pred HHHHHHHHHhCCCEEECCCCCCeeeeeCCCcEEEcHHHHHHHHHHHHHHHHh-----cCCCEEEEeCcHHHHHHHHHHHH
Confidence 0001122334332222 2344456777777777765432 27899999999999999999998
Q ss_pred hhcCCCceEEEecCCCCHHHHHHHHHHhhcCCCcEEEeccccccccCCCC---cc-----EEEEecCCCChhhHHhhhcc
Q psy15524 679 TVLGENIAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPL---VD-----WIVQYTAPSSSTDYVHRVGR 750 (930)
Q Consensus 679 ~~~~~~~~~~~lhg~~~~~~R~~v~~~F~~~~~~vLv~T~~~~~GlDip~---v~-----~VI~~~~p~s~~~y~qr~GR 750 (930)
+. |++...+++.-...+-..+-++-+.| .|.|||++|+||.||.- |. +||....|.|..---|..||
T Consensus 448 ~~---gi~h~vLNAk~~e~EA~IIa~AG~~G--aVTIATNMAGRGTDI~Lg~~V~~~GGLhVIgTerheSrRIDnQLrGR 522 (925)
T PRK12903 448 EA---NIPHTVLNAKQNAREAEIIAKAGQKG--AITIATNMAGRGTDIKLSKEVLELGGLYVLGTDKAESRRIDNQLRGR 522 (925)
T ss_pred HC---CCCceeecccchhhHHHHHHhCCCCC--eEEEecccccCCcCccCchhHHHcCCcEEEecccCchHHHHHHHhcc
Confidence 75 78888888875544444444334444 49999999999999952 22 89999999999999999999
Q ss_pred cccCCCCceEEEEeCcccH
Q psy15524 751 TARVGHEGSSLLFLIPSEV 769 (930)
Q Consensus 751 agR~g~~g~~~~~~~~~e~ 769 (930)
+||.|.+|.+..|++-.+.
T Consensus 523 aGRQGDpGss~f~lSLeD~ 541 (925)
T PRK12903 523 SGRQGDVGESRFFISLDDQ 541 (925)
T ss_pred cccCCCCCcceEEEecchH
Confidence 9999999999999985543
|
|
| >KOG0922|consensus | Back alignment and domain information |
|---|
Probab=99.88 E-value=7.8e-21 Score=208.52 Aligned_cols=320 Identities=22% Similarity=0.276 Sum_probs=217.4
Q ss_pred HhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHHHHhhccCCCcceEE
Q psy15524 421 LSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSW 500 (930)
Q Consensus 421 ~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~ 500 (930)
+.+..+-+++-+||.++||||||.. +| +.|.+. .+. ..|. +-+.-|.|--|.-++++...-.+..-...+++
T Consensus 58 ~il~~ve~nqvlIviGeTGsGKSTQ--ip--QyL~ea--G~~-~~g~-I~~TQPRRVAavslA~RVAeE~~~~lG~~VGY 129 (674)
T KOG0922|consen 58 QILYAVEDNQVLIVIGETGSGKSTQ--IP--QYLAEA--GFA-SSGK-IACTQPRRVAAVSLAKRVAEEMGCQLGEEVGY 129 (674)
T ss_pred HHHHHHHHCCEEEEEcCCCCCcccc--Hh--HHHHhc--ccc-cCCc-EEeecCchHHHHHHHHHHHHHhCCCcCceeee
Confidence 4455555677799999999999984 33 223321 111 2233 77777999888888876655443322223333
Q ss_pred EeCCCchHHHHHHHhcCCcEEEECchhHHHhhhccCCcccccceEEEEecchhhhhcCcH-HHHHHHHHHHhhcCccceE
Q psy15524 501 LTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYE-RDIAEFLEILKKQKPQFQS 579 (930)
Q Consensus 501 ~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~l~~~g~~-~~l~~i~~~l~~~~~~~q~ 579 (930)
-+.-++..+ +...|.+.|.|.|+..+... -.++.+++||+|||| +.... +.+-.+++.+-+.+++.++
T Consensus 130 ~IRFed~ts------~~TrikymTDG~LLRE~l~D--p~LskYsvIIlDEAH---ERsl~TDiLlGlLKki~~~R~~Lkl 198 (674)
T KOG0922|consen 130 TIRFEDSTS------KDTRIKYMTDGMLLREILKD--PLLSKYSVIILDEAH---ERSLHTDILLGLLKKILKKRPDLKL 198 (674)
T ss_pred EEEecccCC------CceeEEEecchHHHHHHhcC--CccccccEEEEechh---hhhhHHHHHHHHHHHHHhcCCCceE
Confidence 333322222 23579999999999887653 347899999999999 44322 4455556666566678899
Q ss_pred EEEccccCHHHHHHHhhhcCCCEEEEccCCCCcccCccceecCCCceEEEEEcCchhhHHHHHHHHHhhccCCCcCCCce
Q psy15524 580 ILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEESK 659 (930)
Q Consensus 580 vl~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~k 659 (930)
+++|||+.. +..+.++.+...+.+.+.. -+++..|...+..+-.......+.+. +..++.+-
T Consensus 199 IimSATlda---~kfS~yF~~a~i~~i~GR~------------fPVei~y~~~p~~dYv~a~~~tv~~I---h~~E~~GD 260 (674)
T KOG0922|consen 199 IIMSATLDA---EKFSEYFNNAPILTIPGRT------------FPVEILYLKEPTADYVDAALITVIQI---HLTEPPGD 260 (674)
T ss_pred EEEeeeecH---HHHHHHhcCCceEeecCCC------------CceeEEeccCCchhhHHHHHHHHHHH---HccCCCCC
Confidence 999999974 3344455553333332221 12333444334433333333333332 22234789
Q ss_pred EEEEecchhhHHHHHHHHhhhcC---CCc--eEEEecCCCCHHHHHHHHHHhhcCCCcEEEeccccccccCCCCccEEEE
Q psy15524 660 MLVFMATQDMADYHTELLSTVLG---ENI--AFFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQ 734 (930)
Q Consensus 660 ~iVF~~s~~~~~~~~~~l~~~~~---~~~--~~~~lhg~~~~~~R~~v~~~F~~~~~~vLv~T~~~~~GlDip~v~~VI~ 734 (930)
+|||....++.+..++.|.+... .+. .+..+||.|+.+++.++++.-..|..+|+++|++++..+.||++..||.
T Consensus 261 ILvFLtGqeEIe~~~~~l~e~~~~~~~~~~~~~lply~aL~~e~Q~rvF~p~p~g~RKvIlsTNIAETSlTI~GI~YVVD 340 (674)
T KOG0922|consen 261 ILVFLTGQEEIEAACELLRERAKSLPEDCPELILPLYGALPSEEQSRVFDPAPPGKRKVILSTNIAETSLTIDGIRYVVD 340 (674)
T ss_pred EEEEeCCHHHHHHHHHHHHHHhhhccccCcceeeeecccCCHHHhhccccCCCCCcceEEEEcceeeeeEEecceEEEEc
Confidence 99999999999999999877632 122 4577999999999999999999999999999999999999999999997
Q ss_pred ec------------------CCCChhhHHhhhcccccCCCCceEEEEeCcccHHHHHHHHhcCCc
Q psy15524 735 YT------------------APSSSTDYVHRVGRTARVGHEGSSLLFLIPSEVKLVEELQNRRIR 781 (930)
Q Consensus 735 ~~------------------~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~e~~~~~~l~~~~~~ 781 (930)
.+ .|-|..+-.||.|||||.| +|.|+-+++.++. ..+....+|
T Consensus 341 sG~vK~~~y~p~~g~~~L~v~~ISkasA~QRaGRAGRt~-pGkcyRLYte~~~---~~~~~~~~P 401 (674)
T KOG0922|consen 341 SGFVKQKKYNPRTGLDSLIVVPISKASANQRAGRAGRTG-PGKCYRLYTESAY---DKMPLQTVP 401 (674)
T ss_pred CCceEEEeeccccCccceeEEechHHHHhhhcccCCCCC-CceEEEeeeHHHH---hhcccCCCC
Confidence 55 4558889999999999987 8999999976654 555544444
|
|
| >PRK09751 putative ATP-dependent helicase Lhr; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=7.2e-22 Score=243.04 Aligned_cols=155 Identities=23% Similarity=0.207 Sum_probs=125.4
Q ss_pred EEcCCCChHHHHHHHHHHHHHHhhCCc----CCCCCCeEEEEEcccHHHHHHHHHHHHHHhh-----------hcCCcee
Q psy15524 25 VRSQTGSGKTLAYAIPIIQKLQEMRPK----ISRKDGIYAVIILPTRELALQTLEIFTKLCK-----------SFTWIVP 89 (930)
Q Consensus 25 v~apTGsGKT~~~~l~~l~~l~~~~~~----~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~-----------~~~~~~~ 89 (930)
|+||||||||++|.+|+++.+...... ....++.++|||+|++||++|+.+.++.... ....+.+
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V 80 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRV 80 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEE
Confidence 579999999999999999998764311 0112468899999999999999999875321 1124778
Q ss_pred EEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCcHHHHHHHHHHHhhcC-CCc
Q psy15524 90 SWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQK-PQF 168 (930)
Q Consensus 90 ~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~~~~~~~i~~~l~~~~-~~~ 168 (930)
...+|+....+....+.+.+||||+|||+|..++.+.....++++++|||||+|.+.+..++..+...++++.... .++
T Consensus 81 ~vrtGDt~~~eR~rll~~ppdILVTTPEsL~~LLtsk~r~~L~~Vr~VIVDE~H~L~g~kRG~~Lel~LeRL~~l~~~~~ 160 (1490)
T PRK09751 81 GIRTGDTPAQERSKLTRNPPDILITTPESLYLMLTSRARETLRGVETVIIDEVHAVAGSKRGAHLALSLERLDALLHTSA 160 (1490)
T ss_pred EEEECCCCHHHHHHHhcCCCCEEEecHHHHHHHHhhhhhhhhccCCEEEEecHHHhcccccccHHHHHHHHHHHhCCCCC
Confidence 8899998888777777788999999999999887653334589999999999999998888888888888887653 568
Q ss_pred eEEEEEeecCC
Q psy15524 169 QSILLSATLTP 179 (930)
Q Consensus 169 ~~i~lSAT~~~ 179 (930)
|+|+||||+++
T Consensus 161 QrIgLSATI~n 171 (1490)
T PRK09751 161 QRIGLSATVRS 171 (1490)
T ss_pred eEEEEEeeCCC
Confidence 99999999986
|
|
| >PRK12902 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.6e-20 Score=212.35 Aligned_cols=291 Identities=19% Similarity=0.174 Sum_probs=182.8
Q ss_pred CCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHHHHhhccC
Q psy15524 414 QVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSF 493 (930)
Q Consensus 414 ~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~ 493 (930)
.++|+-.|.+..+.-.+.-|+.+.||.||||++.+|++-..+. |..|-||+++..||.+-++.+..++..+
T Consensus 83 G~r~ydVQliGgl~Lh~G~IAEM~TGEGKTL~atlpaylnAL~---------GkgVhVVTvNdYLA~RDae~m~~vy~~L 153 (939)
T PRK12902 83 GMRHFDVQLIGGMVLHEGQIAEMKTGEGKTLVATLPSYLNALT---------GKGVHVVTVNDYLARRDAEWMGQVHRFL 153 (939)
T ss_pred CCCcchhHHHhhhhhcCCceeeecCCCChhHHHHHHHHHHhhc---------CCCeEEEeCCHHHHHhHHHHHHHHHHHh
Confidence 3555666666666666778999999999999999999876654 7889999999999999999999999877
Q ss_pred CCcceEEEeCCCchHHHHHHHhcCCcEEEECchhH-----HHhhhc-cCCcccccceEEEEecchhhh-hc---------
Q psy15524 494 TWIVPSWLTGGEKMKSEKARIRKGISILVATPGRL-----LDHCKH-TETLKFSKVEHLVLDEADRIL-DQ--------- 557 (930)
Q Consensus 494 ~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl-----~~~l~~-~~~~~~~~l~~lVlDEah~l~-~~--------- 557 (930)
+. .++++.++.. .+.++....+||+++|++.+ .|.+.. ......+.+.+.|+||+|.++ |.
T Consensus 154 GL-tvg~i~~~~~--~~err~aY~~DItYgTn~e~gFDYLRDnm~~~~~~~vqR~~~faIVDEvDSILIDEArTPLIISg 230 (939)
T PRK12902 154 GL-SVGLIQQDMS--PEERKKNYACDITYATNSELGFDYLRDNMATDISEVVQRPFNYCVIDEVDSILIDEARTPLIISG 230 (939)
T ss_pred CC-eEEEECCCCC--hHHHHHhcCCCeEEecCCcccccchhhhhcccccccccCccceEEEecccceeeccCCCcccccC
Confidence 64 5566666543 34445567899999999987 444432 223456789999999999875 11
Q ss_pred ------CcHHHHHHHHHHHhh------c-----CccceEEEEccccCHHHHHH----------------Hh------h-h
Q psy15524 558 ------GYERDIAEFLEILKK------Q-----KPQFQSILLSATLTPAVQRL----------------AG------M-T 597 (930)
Q Consensus 558 ------g~~~~l~~i~~~l~~------~-----~~~~q~vl~SAT~~~~~~~l----------------~~------~-~ 597 (930)
........+...+.. . ....+.+.++..=-..++.+ .. . +
T Consensus 231 ~~~~~~~~y~~~~~~~~~L~~~~~~~~~~dy~idek~~~v~LTe~G~~~~e~~~~i~nLy~~~~~~~~~i~~AL~A~~lf 310 (939)
T PRK12902 231 QVERPQEKYQKAAEVAAALQRKDGIDPEGDYEVDEKQRNVLLTDEGFAKAEQLLGVSDLFDPQDPWAHYIFNALKAKELF 310 (939)
T ss_pred CCccchHHHHHHHHHHHHhhhhcccCCCCCeEEecCCCeeeEcHHHHHHHHHHhCchhhcCcccHHHHHHHHHHHHHHHH
Confidence 122333444444433 1 11234444443211111111 00 0 1
Q ss_pred cCCCEEEE-------ccCC---------------------------------------------------CCc-------
Q psy15524 598 LQNPIQID-------AADS---------------------------------------------------TDI------- 612 (930)
Q Consensus 598 ~~~~~~i~-------~~~~---------------------------------------------------~~~------- 612 (930)
.++-.++- ++.. .-.
T Consensus 311 ~~d~dYiV~dg~V~IVDe~TGR~m~grrws~GLHQaIEaKE~v~it~e~~tlAsIT~QnfFr~Y~kLsGMTGTa~te~~E 390 (939)
T PRK12902 311 IKDVNYIVRNGEVVIVDEFTGRVMPGRRWSDGLHQAIEAKEGVEIQPETQTLASITYQNFFLLYPKLAGMTGTAKTEEVE 390 (939)
T ss_pred hcCCeEEEECCEEEEEECCCCCCCCCCccchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHhhCchhcccCCCCHHHHHH
Confidence 11111110 0000 000
Q ss_pred ---ccCccceecCCCceEE------EEEcCchhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCC
Q psy15524 613 ---HNTTDSLVIPDSLKQH------FIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGE 683 (930)
Q Consensus 613 ---~~~~~~~~~~~~~~~~------~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~ 683 (930)
-.......+|...... .+......|..++...+..... .+.|+||-+.|.+..+.++++|.+.
T Consensus 391 f~~iY~l~Vv~IPTnkP~~R~d~~d~vy~t~~~K~~Ai~~ei~~~~~-----~GrPVLIgT~SVe~SE~ls~~L~~~--- 462 (939)
T PRK12902 391 FEKTYKLEVTVIPTNRPRRRQDWPDQVYKTEIAKWRAVANETAEMHK-----QGRPVLVGTTSVEKSELLSALLQEQ--- 462 (939)
T ss_pred HHHHhCCcEEEcCCCCCeeeecCCCeEEcCHHHHHHHHHHHHHHHHh-----CCCCEEEeeCCHHHHHHHHHHHHHc---
Confidence 0001122333332222 2334445677777777665432 2889999999999999999999975
Q ss_pred CceEEEecCC-C-CHHHHHHHHHHhhcCCCcEEEeccccccccCC
Q psy15524 684 NIAFFKLHGS-M-SQSERTEVFKTFRSVKSGVLICTDVAARGLDL 726 (930)
Q Consensus 684 ~~~~~~lhg~-~-~~~~R~~v~~~F~~~~~~vLv~T~~~~~GlDi 726 (930)
|++...+++. . ...+-..|-++-+.|. |.|||++|+||.||
T Consensus 463 gi~h~vLNAk~~~~~~EA~IIa~AG~~Ga--VTIATNMAGRGTDI 505 (939)
T PRK12902 463 GIPHNLLNAKPENVEREAEIVAQAGRKGA--VTIATNMAGRGTDI 505 (939)
T ss_pred CCchheeeCCCcchHhHHHHHHhcCCCCc--EEEeccCCCCCcCE
Confidence 7888888886 2 2444455555555555 99999999999998
|
|
| >TIGR00580 mfd transcription-repair coupling factor (mfd) | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.4e-21 Score=229.70 Aligned_cols=155 Identities=26% Similarity=0.326 Sum_probs=120.6
Q ss_pred CCCccCcHHHHHHHHHhhcC------CcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHH
Q psy15524 1 MNITQVTTVQQLSIQPILDG------GDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTL 74 (930)
Q Consensus 1 ~g~~~l~~~Q~~ai~~~~~g------~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~ 74 (930)
+||+ |||.|++||+.++++ +|.+++||||+|||++|++|++..+.. +.+++||+||++||.|++
T Consensus 448 ~~f~-~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~~---------g~qvlvLvPT~~LA~Q~~ 517 (926)
T TIGR00580 448 FPFE-ETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVLD---------GKQVAVLVPTTLLAQQHF 517 (926)
T ss_pred CCCC-CCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHHh---------CCeEEEEeCcHHHHHHHH
Confidence 5784 999999999999875 799999999999999999999988754 567999999999999999
Q ss_pred HHHHHHhhhcCCceeEEeeCCCchHHHH---HHhcC-CCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCc
Q psy15524 75 EIFTKLCKSFTWIVPSWLTGGEKMKSEK---ARIRK-GISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGY 150 (930)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~l~~-~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~ 150 (930)
+.+++++..++ +.+..++|+....+.. ..+.. .++|+||||..+ . ..+.+++++++||||+|++.
T Consensus 518 ~~f~~~~~~~~-i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll----~--~~v~f~~L~llVIDEahrfg---- 586 (926)
T TIGR00580 518 ETFKERFANFP-VTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLL----Q--KDVKFKDLGLLIIDEEQRFG---- 586 (926)
T ss_pred HHHHHHhccCC-cEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHh----h--CCCCcccCCEEEeecccccc----
Confidence 99999987665 6677777776544333 23333 599999999532 2 34568999999999999852
Q ss_pred HHHHHHHHHHHhhcCCCceEEEEEeecCCC
Q psy15524 151 ERDIAEFLEILKKQKPQFQSILLSATLTPA 180 (930)
Q Consensus 151 ~~~~~~i~~~l~~~~~~~~~i~lSAT~~~~ 180 (930)
..... .+.....++++++||||+.+.
T Consensus 587 -v~~~~---~L~~~~~~~~vL~~SATpipr 612 (926)
T TIGR00580 587 -VKQKE---KLKELRTSVDVLTLSATPIPR 612 (926)
T ss_pred -hhHHH---HHHhcCCCCCEEEEecCCCHH
Confidence 22222 233445567899999998653
|
All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families. |
| >CHL00122 secA preprotein translocase subunit SecA; Validated | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.1e-20 Score=215.10 Aligned_cols=343 Identities=19% Similarity=0.192 Sum_probs=212.4
Q ss_pred HHHHHHhcCCCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHH
Q psy15524 402 MKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQ 481 (930)
Q Consensus 402 ~~~~l~~~~~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q 481 (930)
+.++....+|+. ++++| .+..+.-.+.-|+++.||.|||+++.+|++-.... |..|-||+++..||.+
T Consensus 65 vrEa~~R~lG~r-~ydvQ--lig~l~L~~G~IaEm~TGEGKTL~a~l~ayl~aL~---------G~~VhVvT~NdyLA~R 132 (870)
T CHL00122 65 TREASFRTLGLR-HFDVQ--LIGGLVLNDGKIAEMKTGEGKTLVATLPAYLNALT---------GKGVHIVTVNDYLAKR 132 (870)
T ss_pred HHHHHHHHhCCC-CCchH--hhhhHhhcCCccccccCCCCchHHHHHHHHHHHhc---------CCceEEEeCCHHHHHH
Confidence 334444445543 44555 45555556778999999999999999999754433 7889999999999999
Q ss_pred HHHHHHHhhccCCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhH-HHhhhcc-----CCcccccceEEEEecchhhh
Q psy15524 482 TLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRL-LDHCKHT-----ETLKFSKVEHLVLDEADRIL 555 (930)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl-~~~l~~~-----~~~~~~~l~~lVlDEah~l~ 555 (930)
.++.+..++..++ +.++++.++... +.++....++|+++|...+ .|.|+.. .....+.+.+.|+||+|.++
T Consensus 133 D~e~m~pvy~~LG-Lsvg~i~~~~~~--~err~aY~~DItYgTn~e~gFDyLRDnm~~~~~~~v~r~~~faIVDEvDSiL 209 (870)
T CHL00122 133 DQEWMGQIYRFLG-LTVGLIQEGMSS--EERKKNYLKDITYVTNSELGFDYLRDNMALSLSDVVQRPFNYCIIDEVDSIL 209 (870)
T ss_pred HHHHHHHHHHHcC-CceeeeCCCCCh--HHHHHhcCCCCEecCCccccccchhhccCcChHHhhccccceeeeecchhhe
Confidence 9999999998877 455666666554 3344456799999999765 2333321 22235678999999999875
Q ss_pred -hc---------------CcHHHHHHHHHHHhhc-----CccceEEEEccccCHHHHHHH----------------hh--
Q psy15524 556 -DQ---------------GYERDIAEFLEILKKQ-----KPQFQSILLSATLTPAVQRLA----------------GM-- 596 (930)
Q Consensus 556 -~~---------------g~~~~l~~i~~~l~~~-----~~~~q~vl~SAT~~~~~~~l~----------------~~-- 596 (930)
|. ........+...|... ....+.+.++-.-...++.+. ..
T Consensus 210 IDeArTPLiISg~~~~~~~~y~~~~~~v~~L~~~~dy~vdek~k~v~LTe~G~~~~e~~l~i~~ly~~~~~~~~~i~~AL 289 (870)
T CHL00122 210 IDEARTPLIISGQSKTNIDKYIVADELAKYLEKNVHYEVDEKNKNVILTEQGILFIEKILKIEDLYSANDPWIPYILNAL 289 (870)
T ss_pred eccCCCceeccCCCccchHHHHHHHHHHHhcCcCCCeEEEcCCCceEecHHHHHHHHHHcCCccccccccHHHHHHHHHH
Confidence 11 0222333333333321 001122222221000011100 00
Q ss_pred -----hcCCCEEEE-------ccCC---------------------------------------------------CCc-
Q psy15524 597 -----TLQNPIQID-------AADS---------------------------------------------------TDI- 612 (930)
Q Consensus 597 -----~~~~~~~i~-------~~~~---------------------------------------------------~~~- 612 (930)
+.+|-.++- ++.. .-.
T Consensus 290 ~A~~lf~~d~dYiV~dgeV~iVDe~TGR~m~grrws~GLHQaiEaKEgv~It~e~~tlAsIT~QnfFr~Y~kL~GMTGTa 369 (870)
T CHL00122 290 KAKELFFKNVHYIVRNNEIIIVDEFTGRIMPGRRWSDGLHQAIEAKENLPIRQETETLASITYQNFFLLYPKLSGMTGTA 369 (870)
T ss_pred HHHHHHhcCCcEEEECCEEEEEECCCCcCCCCCccchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHHhCchhcccCCCC
Confidence 001110000 0000 000
Q ss_pred ---------ccCccceecCCCceEE------EEEcCchhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHH
Q psy15524 613 ---------HNTTDSLVIPDSLKQH------FIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELL 677 (930)
Q Consensus 613 ---------~~~~~~~~~~~~~~~~------~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l 677 (930)
....+...+|...... .+......|..++...+..... .+.|+||-+.|.+..+.++.+|
T Consensus 370 ~te~~Ef~~iY~l~vv~IPtnkp~~R~d~~d~v~~t~~~K~~AI~~ei~~~~~-----~grPVLIgT~SIe~SE~ls~~L 444 (870)
T CHL00122 370 KTEELEFEKIYNLEVVCIPTHRPMLRKDLPDLIYKDELSKWRAIADECLQMHQ-----TGRPILIGTTTIEKSELLSQLL 444 (870)
T ss_pred HHHHHHHHHHhCCCEEECCCCCCccceeCCCeEEeCHHHHHHHHHHHHHHHHh-----cCCCEEEeeCCHHHHHHHHHHH
Confidence 0001112233322211 2334445677777766655332 2889999999999999999999
Q ss_pred hhhcCCCceEEEecCCC--CHHHHHHHHHHhhcCCCcEEEeccccccccCCC---C------------------------
Q psy15524 678 STVLGENIAFFKLHGSM--SQSERTEVFKTFRSVKSGVLICTDVAARGLDLP---L------------------------ 728 (930)
Q Consensus 678 ~~~~~~~~~~~~lhg~~--~~~~R~~v~~~F~~~~~~vLv~T~~~~~GlDip---~------------------------ 728 (930)
.+. |++...+++.- ...+-..|-++-+.|. |.|||++|+||.||. +
T Consensus 445 ~~~---gi~h~vLNAk~~~~~~EA~IIA~AG~~G~--VTIATNMAGRGTDI~Lgg~~~~~~~~~~~~~~~~~~~~~~~~~ 519 (870)
T CHL00122 445 KEY---RLPHQLLNAKPENVRRESEIVAQAGRKGS--ITIATNMAGRGTDIILGGNPEFKLKKELYDLLLSYKSNEKIST 519 (870)
T ss_pred HHc---CCccceeeCCCccchhHHHHHHhcCCCCc--EEEeccccCCCcCeecCCchhHHHHHHHhhhhccccccccccc
Confidence 885 88888889874 2455555555555555 999999999999982 2
Q ss_pred --------------------------------------------------------------------c-----cEEEEe
Q psy15524 729 --------------------------------------------------------------------V-----DWIVQY 735 (930)
Q Consensus 729 --------------------------------------------------------------------v-----~~VI~~ 735 (930)
| -+||..
T Consensus 520 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~e~V~~~GGL~VIgT 599 (870)
T CHL00122 520 ISQNFLNILNSLKNDLKFLSLSDFENLKILNEASEISIPKNSYQLSLRFLYNELLEKYKKLQEKEKKIVKKLGGLYVIGT 599 (870)
T ss_pred ccccchhhhhhcccchhhhcccccccccccccccccccccchhhhhhhhHHHHHHHHHHHHhhhhHHHHHHcCCCEEEec
Confidence 0 146666
Q ss_pred cCCCChhhHHhhhcccccCCCCceEEEEeCcccH
Q psy15524 736 TAPSSSTDYVHRVGRTARVGHEGSSLLFLIPSEV 769 (930)
Q Consensus 736 ~~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~e~ 769 (930)
....|..---|..||+||.|.+|.+..|++=++.
T Consensus 600 ErheSrRIDnQLrGRaGRQGDPG~s~f~lSLED~ 633 (870)
T CHL00122 600 ERHESRRIDNQLRGRAGRQGDPGSSRFFLSLEDN 633 (870)
T ss_pred CcCchHHHHHHHhccccCCCCCCcceEEEEeccH
Confidence 6777888888999999999999999999996554
|
|
| >PRK10689 transcription-repair coupling factor; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.3e-20 Score=231.36 Aligned_cols=154 Identities=23% Similarity=0.313 Sum_probs=118.9
Q ss_pred CCCccCcHHHHHHHHHhhcC------CcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHH
Q psy15524 1 MNITQVTTVQQLSIQPILDG------GDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTL 74 (930)
Q Consensus 1 ~g~~~l~~~Q~~ai~~~~~g------~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~ 74 (930)
++| .||+.|++||+.++++ +|+|+++|||+|||++|+.+++..+. .+.+++||+||++||.|++
T Consensus 597 ~~~-~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~---------~g~qvlvLvPT~eLA~Q~~ 666 (1147)
T PRK10689 597 FPF-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVE---------NHKQVAVLVPTTLLAQQHY 666 (1147)
T ss_pred CCC-CCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHH---------cCCeEEEEeCcHHHHHHHH
Confidence 467 6999999999999987 79999999999999999988877653 2677999999999999999
Q ss_pred HHHHHHhhhcCCceeEEeeCCCchHHHHHHhc----CCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCc
Q psy15524 75 EIFTKLCKSFTWIVPSWLTGGEKMKSEKARIR----KGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGY 150 (930)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~----~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~ 150 (930)
+.|++.+...+ +.+.+++|+....++...+. +.++|+||||+.+ . ..+.++++++|||||+|++ |+
T Consensus 667 ~~f~~~~~~~~-v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL----~--~~v~~~~L~lLVIDEahrf---G~ 736 (1147)
T PRK10689 667 DNFRDRFANWP-VRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLL----Q--SDVKWKDLGLLIVDEEHRF---GV 736 (1147)
T ss_pred HHHHHhhccCC-ceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHH----h--CCCCHhhCCEEEEechhhc---ch
Confidence 99999876654 66777888777665554432 4689999999744 2 3345789999999999997 33
Q ss_pred HHHHHHHHHHHhhcCCCceEEEEEeecCC
Q psy15524 151 ERDIAEFLEILKKQKPQFQSILLSATLTP 179 (930)
Q Consensus 151 ~~~~~~i~~~l~~~~~~~~~i~lSAT~~~ 179 (930)
.. . ..++..++++|+++||||+.+
T Consensus 737 ~~--~---e~lk~l~~~~qvLl~SATpip 760 (1147)
T PRK10689 737 RH--K---ERIKAMRADVDILTLTATPIP 760 (1147)
T ss_pred hH--H---HHHHhcCCCCcEEEEcCCCCH
Confidence 21 1 223344456677777777754
|
|
| >PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=7.8e-20 Score=219.12 Aligned_cols=322 Identities=15% Similarity=0.238 Sum_probs=207.6
Q ss_pred CCCHHHHHhHHhhh----cCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHHHHh
Q psy15524 414 QVTTVQQLSIQPIL----DGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKL 489 (930)
Q Consensus 414 ~~~~iQ~~~i~~il----~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~ 489 (930)
.|+++|.+++..++ .|.+.|+.-..|.|||+.. +.++..+... +.....+|||||. .+..||.+.+.++
T Consensus 169 ~Lr~YQleGlnWLi~l~~~g~gGILADEMGLGKTlQa-IalL~~L~~~-----~~~~gp~LIVvP~-SlL~nW~~Ei~kw 241 (1033)
T PLN03142 169 KMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQT-ISLLGYLHEY-----RGITGPHMVVAPK-STLGNWMNEIRRF 241 (1033)
T ss_pred chHHHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHH-HHHHHHHHHh-----cCCCCCEEEEeCh-HHHHHHHHHHHHH
Confidence 78899999998775 4678999999999999974 4444444331 1223458999996 7788999999987
Q ss_pred hccCCCcceEEEeCCCchHHHHH-H--HhcCCcEEEECchhHHHhhhccCCcccccceEEEEecchhhhhcCcHHHHHHH
Q psy15524 490 CKSFTWIVPSWLTGGEKMKSEKA-R--IRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEF 566 (930)
Q Consensus 490 ~~~~~~~~~~~~~gg~~~~~~~~-~--~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~l~~~g~~~~l~~i 566 (930)
+.. ..+..+.|......... . .....+|+|+|++.+...... +.--.+++||+||||++-.. ...+...
T Consensus 242 ~p~---l~v~~~~G~~~eR~~~~~~~~~~~~~dVvITSYe~l~~e~~~---L~k~~W~~VIvDEAHrIKN~--~Sklska 313 (1033)
T PLN03142 242 CPV---LRAVKFHGNPEERAHQREELLVAGKFDVCVTSFEMAIKEKTA---LKRFSWRYIIIDEAHRIKNE--NSLLSKT 313 (1033)
T ss_pred CCC---CceEEEeCCHHHHHHHHHHHhcccCCCcceecHHHHHHHHHH---hccCCCCEEEEcCccccCCH--HHHHHHH
Confidence 642 33444555433222111 1 123578999999988654322 22235789999999998543 2334455
Q ss_pred HHHHhhcCccceEEEEccccCH-HHHHH---Hhhhc--------------------------------------------
Q psy15524 567 LEILKKQKPQFQSILLSATLTP-AVQRL---AGMTL-------------------------------------------- 598 (930)
Q Consensus 567 ~~~l~~~~~~~q~vl~SAT~~~-~~~~l---~~~~~-------------------------------------------- 598 (930)
+..+. ....+++|+|+-. ...++ +....
T Consensus 314 lr~L~----a~~RLLLTGTPlqNnl~ELwsLL~FL~P~~f~s~~~F~~~f~~~~~~~~~e~i~~L~~~L~pf~LRR~Ksd 389 (1033)
T PLN03142 314 MRLFS----TNYRLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSD 389 (1033)
T ss_pred HHHhh----cCcEEEEecCCCCCCHHHHHHHHhcCCCCcCCCHHHHHHHHccccccchHHHHHHHHHHhhHHHhhhhHHH
Confidence 55553 2345889999632 11111 11000
Q ss_pred -----CCC--EEEEccCCC--C---------------ccc-C-------------ccceec-----CCC-ceEEEEEcCc
Q psy15524 599 -----QNP--IQIDAADST--D---------------IHN-T-------------TDSLVI-----PDS-LKQHFIVTPP 634 (930)
Q Consensus 599 -----~~~--~~i~~~~~~--~---------------~~~-~-------------~~~~~~-----~~~-~~~~~~~~~~ 634 (930)
... ..+.+.-.. . ... . .....+ |.. ....-..+..
T Consensus 390 V~~~LPpK~e~iv~v~LS~~Qk~lY~~ll~k~~~~l~~g~~~~~LlnilmqLRk~cnHP~L~~~~ep~~~~~~~e~lie~ 469 (1033)
T PLN03142 390 VEKGLPPKKETILKVGMSQMQKQYYKALLQKDLDVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGEHLVEN 469 (1033)
T ss_pred HhhhCCCceeEEEeeCCCHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhCCHHhhhcccccCcccchhHHhhh
Confidence 000 000000000 0 000 0 000000 000 0000001223
Q ss_pred hhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHHHHHHHHHHhhcCC---C
Q psy15524 635 KLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSVK---S 711 (930)
Q Consensus 635 ~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~v~~~F~~~~---~ 711 (930)
..|+..+..++..... .+.++|||+......+.+.+.|... ++.+..+||+++..+|..+++.|.+.. .
T Consensus 470 SgKl~lLdkLL~~Lk~-----~g~KVLIFSQft~~LdiLed~L~~~---g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~ 541 (1033)
T PLN03142 470 SGKMVLLDKLLPKLKE-----RDSRVLIFSQMTRLLDILEDYLMYR---GYQYCRIDGNTGGEDRDASIDAFNKPGSEKF 541 (1033)
T ss_pred hhHHHHHHHHHHHHHh-----cCCeEEeehhHHHHHHHHHHHHHHc---CCcEEEECCCCCHHHHHHHHHHhccccCCce
Confidence 4566666665554322 2789999999999999998888753 788999999999999999999997543 3
Q ss_pred cEEEeccccccccCCCCccEEEEecCCCChhhHHhhhcccccCCCCceEEE
Q psy15524 712 GVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLL 762 (930)
Q Consensus 712 ~vLv~T~~~~~GlDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~g~~~~ 762 (930)
-+|++|.+.+.|||+..+++||+||+|+++..+.|++||+.|.|+...+.+
T Consensus 542 VfLLSTrAGGlGINLt~Ad~VIiyD~dWNP~~d~QAidRaHRIGQkk~V~V 592 (1033)
T PLN03142 542 VFLLSTRAGGLGINLATADIVILYDSDWNPQVDLQAQDRAHRIGQKKEVQV 592 (1033)
T ss_pred EEEEeccccccCCchhhCCEEEEeCCCCChHHHHHHHHHhhhcCCCceEEE
Confidence 578999999999999999999999999999999999999999999765543
|
|
| >KOG0923|consensus | Back alignment and domain information |
|---|
Probab=99.85 E-value=6.9e-20 Score=198.27 Aligned_cols=328 Identities=18% Similarity=0.234 Sum_probs=224.8
Q ss_pred CCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHHHHhh
Q psy15524 411 NITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLC 490 (930)
Q Consensus 411 ~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~ 490 (930)
..-...++-.+.+.++-.++-++|.+.||||||.. +|=+ |... +.+ ..|.++=+--|.|--|.-++.++.+-.
T Consensus 262 ksLPVy~ykdell~av~e~QVLiI~GeTGSGKTTQ--iPQy--L~Ea--Gyt-k~gk~IgcTQPRRVAAmSVAaRVA~EM 334 (902)
T KOG0923|consen 262 KSLPVYPYKDELLKAVKEHQVLIIVGETGSGKTTQ--IPQY--LYEA--GYT-KGGKKIGCTQPRRVAAMSVAARVAEEM 334 (902)
T ss_pred hcCCchhhHHHHHHHHHhCcEEEEEcCCCCCcccc--ccHH--HHhc--ccc-cCCceEeecCcchHHHHHHHHHHHHHh
Confidence 33345566677788888888899999999999984 4432 3321 111 345556777799999998887665544
Q ss_pred ccCCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhccCCcccccceEEEEecchhhhhcCc-HHHHHHHHHH
Q psy15524 491 KSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGY-ERDIAEFLEI 569 (930)
Q Consensus 491 ~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~l~~~g~-~~~l~~i~~~ 569 (930)
+.--...+++-..-++..+++ .-|=++|.|.|+.-+.. ...+.+.+++|+|||| +... -+.+..++..
T Consensus 335 gvkLG~eVGYsIRFEdcTSek------TvlKYMTDGmLlREfL~--epdLasYSViiiDEAH---ERTL~TDILfgLvKD 403 (902)
T KOG0923|consen 335 GVKLGHEVGYSIRFEDCTSEK------TVLKYMTDGMLLREFLS--EPDLASYSVIIVDEAH---ERTLHTDILFGLVKD 403 (902)
T ss_pred CcccccccceEEEeccccCcc------eeeeeecchhHHHHHhc--cccccceeEEEeehhh---hhhhhhhHHHHHHHH
Confidence 321112233333333333322 33559999999876654 4568899999999999 3332 2445556666
Q ss_pred HhhcCccceEEEEccccCHHHHHHHhhhcCC-CEEEEccCCCCcccCccceecCCCceEEEEEcCchhhHHHHHHHHHhh
Q psy15524 570 LKKQKPQFQSILLSATLTPAVQRLAGMTLQN-PIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALASFILGK 648 (930)
Q Consensus 570 l~~~~~~~q~vl~SAT~~~~~~~l~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 648 (930)
+.+.+++...+..|||+.. +.+ +.++.+ |++. +.+. .-++.-+|...|..+-+.+....+.+.
T Consensus 404 Iar~RpdLKllIsSAT~DA--ekF-S~fFDdapIF~-iPGR------------RyPVdi~Yt~~PEAdYldAai~tVlqI 467 (902)
T KOG0923|consen 404 IARFRPDLKLLISSATMDA--EKF-SAFFDDAPIFR-IPGR------------RYPVDIFYTKAPEADYLDAAIVTVLQI 467 (902)
T ss_pred HHhhCCcceEEeeccccCH--HHH-HHhccCCcEEe-ccCc------------ccceeeecccCCchhHHHHHHhhheee
Confidence 6666789999999999964 233 333433 4442 2111 012344566666666666655555443
Q ss_pred ccCCCcCCCceEEEEecchhhHHHHHHHHhhhc---C---CCceEEEecCCCCHHHHHHHHHHhhcCCCcEEEecccccc
Q psy15524 649 CQNVNEDEESKMLVFMATQDMADYHTELLSTVL---G---ENIAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAAR 722 (930)
Q Consensus 649 ~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~---~---~~~~~~~lhg~~~~~~R~~v~~~F~~~~~~vLv~T~~~~~ 722 (930)
. ...+.+-+|||....++.+...+.|.+.. + ..+-++.+|++++.+.+..|++---.|..+|++||++|+.
T Consensus 468 H---~tqp~GDILVFltGQeEIEt~~e~l~~~~~~LGski~eliv~PiYaNLPselQakIFePtP~gaRKVVLATNIAET 544 (902)
T KOG0923|consen 468 H---LTQPLGDILVFLTGQEEIETVKENLKERCRRLGSKIRELIVLPIYANLPSELQAKIFEPTPPGARKVVLATNIAET 544 (902)
T ss_pred E---eccCCccEEEEeccHHHHHHHHHHHHHHHHHhccccceEEEeeccccCChHHHHhhcCCCCCCceeEEEeecchhh
Confidence 3 33347899999999999877776665542 1 2467888999999999999999999999999999999999
Q ss_pred ccCCCCccEEEEec------------------CCCChhhHHhhhcccccCCCCceEEEEeCcccHHHHHHHHhc
Q psy15524 723 GLDLPLVDWIVQYT------------------APSSSTDYVHRVGRTARVGHEGSSLLFLIPSEVKLVEELQNR 778 (930)
Q Consensus 723 GlDip~v~~VI~~~------------------~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~e~~~~~~l~~~ 778 (930)
.+.|++|..||.-+ .|-|...-.||.|||||.| +|.|+-+++.. .|...|...
T Consensus 545 SlTIdgI~yViDpGf~K~nsynprtGmesL~v~piSKAsA~QRaGRAGRtg-PGKCfRLYt~~--aY~~eLE~~ 615 (902)
T KOG0923|consen 545 SLTIDGIKYVIDPGFVKQNSYNPRTGMESLLVTPISKASANQRAGRAGRTG-PGKCFRLYTAW--AYEHELEEM 615 (902)
T ss_pred ceeecCeEEEecCccccccCcCCCcCceeEEEeeechhhhhhhccccCCCC-CCceEEeechh--hhhhhhccC
Confidence 99999999999754 4457778899999999998 99999998743 344444443
|
|
| >COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.85 E-value=5.9e-20 Score=219.54 Aligned_cols=337 Identities=20% Similarity=0.198 Sum_probs=214.3
Q ss_pred CCHHHHHhHHhhhcC---C-cEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHHHHhh
Q psy15524 415 VTTVQQLSIQPILDG---G-DVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLC 490 (930)
Q Consensus 415 ~~~iQ~~~i~~il~~---~-d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~ 490 (930)
..+.|..++..+... . .+++.||||+|||.+.+++++..+... .....+++++.|++.+..++++.++..+
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~-----~~~~~r~i~vlP~~t~ie~~~~r~~~~~ 270 (733)
T COG1203 196 GYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEK-----IKLKSRVIYVLPFRTIIEDMYRRAKEIF 270 (733)
T ss_pred hhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhcc-----ccccceEEEEccHHHHHHHHHHHHHhhh
Confidence 377888888887754 4 688999999999999999998877652 1257789999999999999999999877
Q ss_pred ccCCCcceEEEeCCCchHHHHHH--------------HhcCCcEEEECchhHHHhhhccCCcc-c--ccceEEEEecchh
Q psy15524 491 KSFTWIVPSWLTGGEKMKSEKAR--------------IRKGISILVATPGRLLDHCKHTETLK-F--SKVEHLVLDEADR 553 (930)
Q Consensus 491 ~~~~~~~~~~~~gg~~~~~~~~~--------------~~~~~~Ilv~Tp~rl~~~l~~~~~~~-~--~~l~~lVlDEah~ 553 (930)
......... ..|.......... ..-...+.++||-.+.........+. + =..+.+|+||+|.
T Consensus 271 ~~~~~~~~~-~h~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~vIlDE~h~ 349 (733)
T COG1203 271 GLFSVIGKS-LHSSSKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSLVILDEVHL 349 (733)
T ss_pred ccccccccc-ccccccchhhhccccccceeEEecccccceeccccccCHhHhhhhhccccchHHHHHHHhhchhhccHHh
Confidence 654322211 1121111100000 00012345555544433211111111 1 1246899999999
Q ss_pred hhhcCcHHHHHHHHHHHhhcCccceEEEEccccCHHHHHHHhhhcCCCEEEEccCCCCcccCccceecCCCceEEEEEcC
Q psy15524 554 ILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTP 633 (930)
Q Consensus 554 l~~~g~~~~l~~i~~~l~~~~~~~q~vl~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 633 (930)
+.+...-..+..++..+... +..++++|||+|+...+.......+...+......... .. .. .+.+......
T Consensus 350 ~~~~~~~~~l~~~i~~l~~~--g~~ill~SATlP~~~~~~l~~~~~~~~~~~~~~~~~~~-~~-e~----~~~~~~~~~~ 421 (733)
T COG1203 350 YADETMLAALLALLEALAEA--GVPVLLMSATLPPFLKEKLKKALGKGREVVENAKFCPK-ED-EP----GLKRKERVDV 421 (733)
T ss_pred hcccchHHHHHHHHHHHHhC--CCCEEEEecCCCHHHHHHHHHHHhcccceecccccccc-cc-cc----ccccccchhh
Confidence 88775555666666666653 67899999999999888777666544333222110000 00 00 0000000000
Q ss_pred chhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHHHHHHHHHHhh----cC
Q psy15524 634 PKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFR----SV 709 (930)
Q Consensus 634 ~~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~v~~~F~----~~ 709 (930)
.......+...+.. ....+.+++|-|+|++.|..+++.|+.. +..++.+||.+...+|.+.++... .+
T Consensus 422 ~~~~~~~~~~~~~~-----~~~~~~kvlvI~NTV~~Aie~Y~~Lk~~---~~~v~LlHSRf~~~dR~~ke~~l~~~~~~~ 493 (733)
T COG1203 422 EDGPQEELIELISE-----EVKEGKKVLVIVNTVDRAIELYEKLKEK---GPKVLLLHSRFTLKDREEKERELKKLFKQN 493 (733)
T ss_pred hhhhhHhhhhcchh-----hhccCCcEEEEEecHHHHHHHHHHHHhc---CCCEEEEecccchhhHHHHHHHHHHHHhcc
Confidence 00000011111111 1123789999999999999999999985 226899999999999998888544 46
Q ss_pred CCcEEEeccccccccCCCCccEEEEecCCCChhhHHhhhcccccCC--CCceEEEEeCcccHHHHHHHH
Q psy15524 710 KSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVG--HEGSSLLFLIPSEVKLVEELQ 776 (930)
Q Consensus 710 ~~~vLv~T~~~~~GlDip~v~~VI~~~~p~s~~~y~qr~GRagR~g--~~g~~~~~~~~~e~~~~~~l~ 776 (930)
...|+|||++.+-|+|+. .+++|-- +..++..+||+||++|-| ..|..+++.......+..+..
T Consensus 494 ~~~IvVaTQVIEagvDid-fd~mITe--~aPidSLIQR~GRv~R~g~~~~~~~~v~~~~~~~~~~~~~~ 559 (733)
T COG1203 494 EGFIVVATQVIEAGVDID-FDVLITE--LAPIDSLIQRAGRVNRHGKKENGKIYVYNDEERGPYLKYSY 559 (733)
T ss_pred CCeEEEEeeEEEEEeccc-cCeeeec--CCCHHHHHHHHHHHhhcccccCCceeEeecccCCCchhhhh
Confidence 778999999999999994 7776654 445889999999999999 567777766655555544443
|
|
| >PRK10917 ATP-dependent DNA helicase RecG; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.6e-20 Score=223.21 Aligned_cols=154 Identities=25% Similarity=0.371 Sum_probs=121.8
Q ss_pred CCCccCcHHHHHHHHHhhcC------CcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHH
Q psy15524 1 MNITQVTTVQQLSIQPILDG------GDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTL 74 (930)
Q Consensus 1 ~g~~~l~~~Q~~ai~~~~~g------~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~ 74 (930)
++| +||++|++|++.+.++ +|.|++||||||||++|++|++..+.. |.+++|++||++||.|++
T Consensus 258 l~f-~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~~---------g~q~lilaPT~~LA~Q~~ 327 (681)
T PRK10917 258 LPF-ELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIEA---------GYQAALMAPTEILAEQHY 327 (681)
T ss_pred CCC-CCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHHc---------CCeEEEEeccHHHHHHHH
Confidence 467 5999999999999887 489999999999999999999988743 678999999999999999
Q ss_pred HHHHHHhhhcCCceeEEeeCCCchHHHH---HHhcC-CCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCc
Q psy15524 75 EIFTKLCKSFTWIVPSWLTGGEKMKSEK---ARIRK-GISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGY 150 (930)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~l~~-~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~ 150 (930)
+.+++++...+ +.+..++|+....... ..+.. .++|+||||+.+.+ .+.++++++|||||+|++....
T Consensus 328 ~~l~~l~~~~~-i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~------~v~~~~l~lvVIDE~Hrfg~~q- 399 (681)
T PRK10917 328 ENLKKLLEPLG-IRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQD------DVEFHNLGLVIIDEQHRFGVEQ- 399 (681)
T ss_pred HHHHHHHhhcC-cEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcc------cchhcccceEEEechhhhhHHH-
Confidence 99999987765 7788899988754332 33333 59999999987733 3457899999999999863221
Q ss_pred HHHHHHHHHHHhhcCCCceEEEEEeecCC
Q psy15524 151 ERDIAEFLEILKKQKPQFQSILLSATLTP 179 (930)
Q Consensus 151 ~~~~~~i~~~l~~~~~~~~~i~lSAT~~~ 179 (930)
+. .+......+++++||||+.+
T Consensus 400 ----r~---~l~~~~~~~~iL~~SATp~p 421 (681)
T PRK10917 400 ----RL---ALREKGENPHVLVMTATPIP 421 (681)
T ss_pred ----HH---HHHhcCCCCCEEEEeCCCCH
Confidence 11 22233445789999999865
|
|
| >TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative | Back alignment and domain information |
|---|
Probab=99.84 E-value=6.7e-19 Score=215.23 Aligned_cols=122 Identities=20% Similarity=0.286 Sum_probs=87.0
Q ss_pred HHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhc-CCCceEEEecCCCCHHHHHHHHHHhhcCCCcEEEec
Q psy15524 639 VALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVL-GENIAFFKLHGSMSQSERTEVFKTFRSVKSGVLICT 717 (930)
Q Consensus 639 ~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~-~~~~~~~~lhg~~~~~~R~~v~~~F~~~~~~vLv~T 717 (930)
..+...+...... .+++++|||+|.+..+.+++.|.... ..++.+. ..+.. ..|..+++.|++++..||+||
T Consensus 660 ~~ia~~i~~l~~~----~~g~~LVlftS~~~l~~v~~~L~~~~~~~~~~~l--~q~~~-~~r~~ll~~F~~~~~~iLlgt 732 (850)
T TIGR01407 660 QEIASYIIEITAI----TSPKILVLFTSYEMLHMVYDMLNELPEFEGYEVL--AQGIN-GSRAKIKKRFNNGEKAILLGT 732 (850)
T ss_pred HHHHHHHHHHHHh----cCCCEEEEeCCHHHHHHHHHHHhhhccccCceEE--ecCCC-ccHHHHHHHHHhCCCeEEEEc
Confidence 3455555444332 15799999999999999999987532 1234443 33333 578999999999999999999
Q ss_pred cccccccCCCCcc--EEEEecCCCC------------------------------hhhHHhhhcccccCCCCceEEEEeC
Q psy15524 718 DVAARGLDLPLVD--WIVQYTAPSS------------------------------STDYVHRVGRTARVGHEGSSLLFLI 765 (930)
Q Consensus 718 ~~~~~GlDip~v~--~VI~~~~p~s------------------------------~~~y~qr~GRagR~g~~g~~~~~~~ 765 (930)
+.+++|+|+|+.. +||....|.. ...+.|.+||.-|...+...++++.
T Consensus 733 ~sf~EGVD~~g~~l~~viI~~LPf~~p~dp~~~a~~~~~~~~g~~~f~~~~lP~A~~~l~Qa~GRlIRs~~D~G~v~ilD 812 (850)
T TIGR01407 733 SSFWEGVDFPGNGLVCLVIPRLPFANPKHPLTKKYWQKLEQEGKNPFYDYVLPMAIIRLRQALGRLIRRENDRGSIVILD 812 (850)
T ss_pred ceeecccccCCCceEEEEEeCCCCCCCCCHHHHHHHHHHHHhcCCchHHhhHHHHHHHHHHhhccccccCCceEEEEEEc
Confidence 9999999999877 4555665531 1245699999999887755666665
Q ss_pred cc
Q psy15524 766 PS 767 (930)
Q Consensus 766 ~~ 767 (930)
++
T Consensus 813 ~R 814 (850)
T TIGR01407 813 RR 814 (850)
T ss_pred cc
Confidence 43
|
This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli. |
| >COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.8e-19 Score=204.80 Aligned_cols=329 Identities=20% Similarity=0.267 Sum_probs=214.4
Q ss_pred CCCCHHHHHhHHhhhcC----CcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHHHH
Q psy15524 413 TQVTTVQQLSIQPILDG----GDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTK 488 (930)
Q Consensus 413 ~~~~~iQ~~~i~~il~~----~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~ 488 (930)
..+++-|+.++..+... +-.++.+.||||||.+|+=.+-+.+.. |..+|+|+|-.+|-.|+.+.|+.
T Consensus 197 ~~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~~---------GkqvLvLVPEI~Ltpq~~~rf~~ 267 (730)
T COG1198 197 LALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVLAQ---------GKQVLVLVPEIALTPQLLARFKA 267 (730)
T ss_pred cccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHHHHc---------CCEEEEEeccccchHHHHHHHHH
Confidence 35677899999988765 458999999999999988777777654 88999999999999999999999
Q ss_pred hhccCCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhccCCcccccceEEEEecchhhhhc---C---cHHH
Q psy15524 489 LCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQ---G---YERD 562 (930)
Q Consensus 489 ~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~l~~~---g---~~~~ 562 (930)
.++.-...-.+.+..++....+.+.......|+||| ++.-...++++.+||+||-|.-... + ...+
T Consensus 268 rFg~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGt--------RSAlF~Pf~~LGLIIvDEEHD~sYKq~~~prYhARd 339 (730)
T COG1198 268 RFGAKVAVLHSGLSPGERYRVWRRARRGEARVVIGT--------RSALFLPFKNLGLIIVDEEHDSSYKQEDGPRYHARD 339 (730)
T ss_pred HhCCChhhhcccCChHHHHHHHHHHhcCCceEEEEe--------chhhcCchhhccEEEEeccccccccCCcCCCcCHHH
Confidence 887432222333444444444444444668999999 3322345899999999999954311 1 2345
Q ss_pred HHHHHHHHhhcCccceEEEEccccCHHHHHHHhhhcCCCEEEEccCCCCcccCccceecCCCceEEEEEcCch--h----
Q psy15524 563 IAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPK--L---- 636 (930)
Q Consensus 563 l~~i~~~l~~~~~~~q~vl~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~---- 636 (930)
+....... .++++|+-|||++=+ .+....-.....+....... .. .+|. ..++..... .
T Consensus 340 vA~~Ra~~----~~~pvvLgSATPSLE--S~~~~~~g~y~~~~L~~R~~-~a-----~~p~---v~iiDmr~e~~~~~~~ 404 (730)
T COG1198 340 VAVLRAKK----ENAPVVLGSATPSLE--SYANAESGKYKLLRLTNRAG-RA-----RLPR---VEIIDMRKEPLETGRS 404 (730)
T ss_pred HHHHHHHH----hCCCEEEecCCCCHH--HHHhhhcCceEEEEcccccc-cc-----CCCc---ceEEeccccccccCcc
Confidence 55544444 378999999998743 33333222222232222111 00 0000 011100000 0
Q ss_pred hHHHHHHHHHhhccCCCcCCCceEEEEecchhhH----------------------------------------------
Q psy15524 637 RLVALASFILGKCQNVNEDEESKMLVFMATQDMA---------------------------------------------- 670 (930)
Q Consensus 637 ~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~---------------------------------------------- 670 (930)
--..+...+...... +.++|+|.+.+.-+
T Consensus 405 lS~~Ll~~i~~~l~~-----geQ~llflnRRGys~~l~C~~Cg~v~~Cp~Cd~~lt~H~~~~~L~CH~Cg~~~~~p~~Cp 479 (730)
T COG1198 405 LSPALLEAIRKTLER-----GEQVLLFLNRRGYAPLLLCRDCGYIAECPNCDSPLTLHKATGQLRCHYCGYQEPIPQSCP 479 (730)
T ss_pred CCHHHHHHHHHHHhc-----CCeEEEEEccCCccceeecccCCCcccCCCCCcceEEecCCCeeEeCCCCCCCCCCCCCC
Confidence 012334444333222 45566665543211
Q ss_pred --------------HHHHHHHhhhcCCCceEEEecCCCCHHH--HHHHHHHhhcCCCcEEEeccccccccCCCCccEEEE
Q psy15524 671 --------------DYHTELLSTVLGENIAFFKLHGSMSQSE--RTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQ 734 (930)
Q Consensus 671 --------------~~~~~~l~~~~~~~~~~~~lhg~~~~~~--R~~v~~~F~~~~~~vLv~T~~~~~GlDip~v~~VI~ 734 (930)
+.+.+.|.+.++ +..+..+.++.+... -+..+..|.+|+.+|||.|.+++-|.|+|+++.|..
T Consensus 480 ~Cgs~~L~~~G~GterieeeL~~~FP-~~rv~r~d~Dtt~~k~~~~~~l~~~~~ge~dILiGTQmiaKG~~fp~vtLVgv 558 (730)
T COG1198 480 ECGSEHLRAVGPGTERIEEELKRLFP-GARIIRIDSDTTRRKGALEDLLDQFANGEADILIGTQMIAKGHDFPNVTLVGV 558 (730)
T ss_pred CCCCCeeEEecccHHHHHHHHHHHCC-CCcEEEEccccccchhhHHHHHHHHhCCCCCeeecchhhhcCCCcccceEEEE
Confidence 333455555543 577777777766543 467799999999999999999999999999998876
Q ss_pred ecCCC------------ChhhHHhhhcccccCCCCceEEEEeCcccHHHHHHHHhcC
Q psy15524 735 YTAPS------------SSTDYVHRVGRTARVGHEGSSLLFLIPSEVKLVEELQNRR 779 (930)
Q Consensus 735 ~~~p~------------s~~~y~qr~GRagR~g~~g~~~~~~~~~e~~~~~~l~~~~ 779 (930)
.|... ....+.|-.|||||.+++|..++-....+...++.+...+
T Consensus 559 l~aD~~L~~~DfRA~Er~fqll~QvaGRAgR~~~~G~VvIQT~~P~hp~i~~~~~~d 615 (730)
T COG1198 559 LDADTGLGSPDFRASERTFQLLMQVAGRAGRAGKPGEVVIQTYNPDHPAIQALKRGD 615 (730)
T ss_pred EechhhhcCCCcchHHHHHHHHHHHHhhhccCCCCCeEEEEeCCCCcHHHHHHHhcC
Confidence 66432 2346789999999999999999988888877777777654
|
|
| >KOG0949|consensus | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.3e-19 Score=203.59 Aligned_cols=168 Identities=16% Similarity=0.148 Sum_probs=117.8
Q ss_pred CCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHHHHhhccC
Q psy15524 414 QVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSF 493 (930)
Q Consensus 414 ~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~ 493 (930)
.|..||.+.+..+=.++.+++.|||.+|||++---+ ++...+ ..+..-+|+++||++|+.|+...+...+...
T Consensus 511 ~Pd~WQ~elLDsvDr~eSavIVAPTSaGKTfisfY~-iEKVLR------esD~~VVIyvaPtKaLVnQvsa~VyaRF~~~ 583 (1330)
T KOG0949|consen 511 CPDEWQRELLDSVDRNESAVIVAPTSAGKTFISFYA-IEKVLR------ESDSDVVIYVAPTKALVNQVSANVYARFDTK 583 (1330)
T ss_pred CCcHHHHHHhhhhhcccceEEEeeccCCceeccHHH-HHHHHh------hcCCCEEEEecchHHHhhhhhHHHHHhhccC
Confidence 466799999998888999999999999999874433 344433 1456669999999999999998888777433
Q ss_pred CCcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhcc--CCcccccceEEEEecchhhhhcCcHHHHHHHHHHHh
Q psy15524 494 TWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHT--ETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILK 571 (930)
Q Consensus 494 ~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~--~~~~~~~l~~lVlDEah~l~~~g~~~~l~~i~~~l~ 571 (930)
.......+.|.-...-... .-+|+|+|+-|+.+..++... ......+++++|+||+|.+..+.-+-..++++..+
T Consensus 584 t~~rg~sl~g~ltqEYsin--p~nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEVH~iG~~ed~l~~Eqll~li- 660 (1330)
T KOG0949|consen 584 TFLRGVSLLGDLTQEYSIN--PWNCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEVHLIGNEEDGLLWEQLLLLI- 660 (1330)
T ss_pred ccccchhhHhhhhHHhcCC--chhceEEEEchHHHHHHhcCchhhhhhhhcceEEEechhhhccccccchHHHHHHHhc-
Confidence 3222222222222111111 125899999999998887663 23357899999999999998766555555555554
Q ss_pred hcCccceEEEEccccCHH--HHHHHh
Q psy15524 572 KQKPQFQSILLSATLTPA--VQRLAG 595 (930)
Q Consensus 572 ~~~~~~q~vl~SAT~~~~--~~~l~~ 595 (930)
.++++++|||+.+. ...|..
T Consensus 661 ----~CP~L~LSATigN~~l~qkWln 682 (1330)
T KOG0949|consen 661 ----PCPFLVLSATIGNPNLFQKWLN 682 (1330)
T ss_pred ----CCCeeEEecccCCHHHHHHHHH
Confidence 67899999998753 344443
|
|
| >TIGR00643 recG ATP-dependent DNA helicase RecG | Back alignment and domain information |
|---|
Probab=99.84 E-value=7.7e-20 Score=216.18 Aligned_cols=159 Identities=25% Similarity=0.336 Sum_probs=121.4
Q ss_pred CCCccCcHHHHHHHHHhhcC------CcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHH
Q psy15524 1 MNITQVTTVQQLSIQPILDG------GDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTL 74 (930)
Q Consensus 1 ~g~~~l~~~Q~~ai~~~~~g------~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~ 74 (930)
++| +||+.|++|++.++++ .+.+++||||||||++|++|++..+.. +.+++|++||++||.|++
T Consensus 232 lpf-~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~~---------g~qvlilaPT~~LA~Q~~ 301 (630)
T TIGR00643 232 LPF-KLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIEA---------GYQVALMAPTEILAEQHY 301 (630)
T ss_pred CCC-CCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHHc---------CCcEEEECCHHHHHHHHH
Confidence 467 6999999999999876 368999999999999999999988753 667999999999999999
Q ss_pred HHHHHHhhhcCCceeEEeeCCCchHHH---HHHhc-CCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCc
Q psy15524 75 EIFTKLCKSFTWIVPSWLTGGEKMKSE---KARIR-KGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGY 150 (930)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~g~~~~~~~---~~~l~-~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~ 150 (930)
+.+++++...+ +.+..++|+...... ...+. +.++|+||||+.+.+ .+.+.++++|||||+|++....+
T Consensus 302 ~~~~~l~~~~g-i~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~------~~~~~~l~lvVIDEaH~fg~~qr 374 (630)
T TIGR00643 302 NSLRNLLAPLG-IEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQE------KVEFKRLALVIIDEQHRFGVEQR 374 (630)
T ss_pred HHHHHHhcccC-cEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhc------cccccccceEEEechhhccHHHH
Confidence 99999987655 778888888765543 23333 458999999987743 24578999999999998643221
Q ss_pred HHHHHHHHHHHhhcCCCceEEEEEeecCCCc
Q psy15524 151 ERDIAEFLEILKKQKPQFQSILLSATLTPAT 181 (930)
Q Consensus 151 ~~~~~~i~~~l~~~~~~~~~i~lSAT~~~~~ 181 (930)
..+.... .....++++++|||+.+.+
T Consensus 375 ----~~l~~~~-~~~~~~~~l~~SATp~prt 400 (630)
T TIGR00643 375 ----KKLREKG-QGGFTPHVLVMSATPIPRT 400 (630)
T ss_pred ----HHHHHhc-ccCCCCCEEEEeCCCCcHH
Confidence 1111111 1112578999999987633
|
|
| >TIGR00631 uvrb excinuclease ABC, B subunit | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.6e-18 Score=198.45 Aligned_cols=136 Identities=24% Similarity=0.345 Sum_probs=118.4
Q ss_pred CchhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHHHHHHHHHHhhcCCCc
Q psy15524 633 PPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSVKSG 712 (930)
Q Consensus 633 ~~~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~v~~~F~~~~~~ 712 (930)
+...++..+...+...... +.++||||+|++.++.+++.|.+. |+.+..+||++++.+|..+++.|+.|+..
T Consensus 423 ~~~~qi~~Ll~eI~~~~~~-----g~~vLIf~~tk~~ae~L~~~L~~~---gi~~~~lh~~~~~~eR~~~l~~fr~G~i~ 494 (655)
T TIGR00631 423 PTDGQVDDLLSEIRQRVAR-----NERVLVTTLTKKMAEDLTDYLKEL---GIKVRYLHSEIDTLERVEIIRDLRLGEFD 494 (655)
T ss_pred eccchHHHHHHHHHHHHcC-----CCEEEEEECCHHHHHHHHHHHhhh---ccceeeeeCCCCHHHHHHHHHHHhcCCce
Confidence 3345666777777654332 679999999999999999999875 78888899999999999999999999999
Q ss_pred EEEeccccccccCCCCccEEEEec-----CCCChhhHHhhhcccccCCCCceEEEEeCcccHHHHHHHHh
Q psy15524 713 VLICTDVAARGLDLPLVDWIVQYT-----APSSSTDYVHRVGRTARVGHEGSSLLFLIPSEVKLVEELQN 777 (930)
Q Consensus 713 vLv~T~~~~~GlDip~v~~VI~~~-----~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~e~~~~~~l~~ 777 (930)
|||||+++++|+|+|++++||++| .|.+...|+||+|||||. ..|.+++|+...+......+.+
T Consensus 495 VLV~t~~L~rGfDiP~v~lVvi~DadifG~p~~~~~~iqriGRagR~-~~G~vi~~~~~~~~~~~~ai~~ 563 (655)
T TIGR00631 495 VLVGINLLREGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVIMYADKITDSMQKAIEE 563 (655)
T ss_pred EEEEcChhcCCeeeCCCcEEEEeCcccccCCCCHHHHHHHhcCCCCC-CCCEEEEEEcCCCHHHHHHHHH
Confidence 999999999999999999999998 799999999999999998 6899999998877666555544
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) |
| >COG1110 Reverse gyrase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.83 E-value=3e-18 Score=195.23 Aligned_cols=289 Identities=20% Similarity=0.246 Sum_probs=192.1
Q ss_pred HHHhcCCCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHH
Q psy15524 405 NLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLE 484 (930)
Q Consensus 405 ~l~~~~~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~ 484 (930)
.+.+..|+ .|...|+--...++.|++.-+.||||.|||.--++..+-.. ..|.++++|+||+.|+.|+++
T Consensus 74 fF~k~~G~-~~ws~QR~WakR~~rg~SFaiiAPTGvGKTTfg~~~sl~~a---------~kgkr~yii~PT~~Lv~Q~~~ 143 (1187)
T COG1110 74 FFKKATGF-RPWSAQRVWAKRLVRGKSFAIIAPTGVGKTTFGLLMSLYLA---------KKGKRVYIIVPTTTLVRQVYE 143 (1187)
T ss_pred HHHHhhCC-CchHHHHHHHHHHHcCCceEEEcCCCCchhHHHHHHHHHHH---------hcCCeEEEEecCHHHHHHHHH
Confidence 34444576 89999999999999999999999999999975444433222 347899999999999999999
Q ss_pred HHHHhhccCCCcceEEEeCCCchHH----HHHHHhc-CCcEEEECchhHHHhhhccCCcccccceEEEEecchhhhhcC-
Q psy15524 485 IFTKLCKSFTWIVPSWLTGGEKMKS----EKARIRK-GISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQG- 558 (930)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~gg~~~~~----~~~~~~~-~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~l~~~g- 558 (930)
.+.++....+......++.+.-... ...++.+ +.+|+|+|..-|....... .--+++++++|.+|.++..+
T Consensus 144 kl~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e~L---~~~kFdfifVDDVDA~Lkask 220 (1187)
T COG1110 144 RLKKFAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQFLSKRFEEL---SKLKFDFIFVDDVDAILKASK 220 (1187)
T ss_pred HHHHHHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhHHHh---cccCCCEEEEccHHHHHhccc
Confidence 9999987665222222244432222 2334443 5899999987776555432 22468999999999887433
Q ss_pred ----------cHHH-H------HHHHHHHh---------------------hcCccceEEEEccccCHHH--HHHHhhhc
Q psy15524 559 ----------YERD-I------AEFLEILK---------------------KQKPQFQSILLSATLTPAV--QRLAGMTL 598 (930)
Q Consensus 559 ----------~~~~-l------~~i~~~l~---------------------~~~~~~q~vl~SAT~~~~~--~~l~~~~~ 598 (930)
|.+. + ..+...+. +....-+.+..|||..+.- ..+.+..+
T Consensus 221 NvDriL~LlGf~eE~i~~a~~~~~lr~~~~~~~~~~~~~e~~~~~e~~~~~~r~k~g~LvvsSATg~~rg~R~~LfReLl 300 (1187)
T COG1110 221 NVDRLLRLLGFSEEVIESAYELIKLRRKLYGEKRAERVREELREVEREREKKRRKLGILVVSSATGKPRGSRLKLFRELL 300 (1187)
T ss_pred cHHHHHHHcCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhccCCceEEEeeccCCCCCchHHHHHHHh
Confidence 3221 1 11111111 0112467899999987642 22333333
Q ss_pred CCCEEEEccCCCCcccCccceecCCCceEEEEEcCchhhHHHHHHHHHhhccCCCcCCCceEEEEecc---hhhHHHHHH
Q psy15524 599 QNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMAT---QDMADYHTE 675 (930)
Q Consensus 599 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s---~~~~~~~~~ 675 (930)
.- .+... .....++...|...+...+.. .+++.. +...|||++. ++.++.+++
T Consensus 301 gF----evG~~---------~~~LRNIvD~y~~~~~~e~~~---elvk~l--------G~GgLIfV~~d~G~e~aeel~e 356 (1187)
T COG1110 301 GF----EVGSG---------GEGLRNIVDIYVESESLEKVV---ELVKKL--------GDGGLIFVPIDYGREKAEELAE 356 (1187)
T ss_pred CC----ccCcc---------chhhhheeeeeccCccHHHHH---HHHHHh--------CCCeEEEEEcHHhHHHHHHHHH
Confidence 21 11110 011123444444443334433 344332 6789999999 888889999
Q ss_pred HHhhhcCCCceEEEecCCCCHHHHHHHHHHhhcCCCcEEEec----cccccccCCCC-ccEEEEecCC
Q psy15524 676 LLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSVKSGVLICT----DVAARGLDLPL-VDWIVQYTAP 738 (930)
Q Consensus 676 ~l~~~~~~~~~~~~lhg~~~~~~R~~v~~~F~~~~~~vLv~T----~~~~~GlDip~-v~~VI~~~~p 738 (930)
.|... |+.+..+|+. ..+.++.|..|+.++||.. .++.||+|+|. +..+|.+++|
T Consensus 357 ~Lr~~---Gi~a~~~~a~-----~~~~le~F~~GeidvLVGvAsyYG~lVRGlDLP~rirYaIF~GvP 416 (1187)
T COG1110 357 YLRSH---GINAELIHAE-----KEEALEDFEEGEVDVLVGVASYYGVLVRGLDLPHRIRYAVFYGVP 416 (1187)
T ss_pred HHHhc---CceEEEeecc-----chhhhhhhccCceeEEEEecccccceeecCCchhheeEEEEecCC
Confidence 98875 8888888874 3778999999999999986 47899999995 6788888877
|
|
| >KOG0924|consensus | Back alignment and domain information |
|---|
Probab=99.83 E-value=7.4e-19 Score=190.49 Aligned_cols=314 Identities=18% Similarity=0.233 Sum_probs=208.7
Q ss_pred CCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHHHHhhccCC
Q psy15524 415 VTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFT 494 (930)
Q Consensus 415 ~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~ 494 (930)
....+.+.+..+..++-+++.+.||||||....--+++.-+. +...+-+--|.|.-|.-++..+..-++..-
T Consensus 357 vf~~R~~ll~~ir~n~vvvivgETGSGKTTQl~QyL~edGY~--------~~GmIGcTQPRRvAAiSVAkrVa~EM~~~l 428 (1042)
T KOG0924|consen 357 VFACRDQLLSVIRENQVVVIVGETGSGKTTQLAQYLYEDGYA--------DNGMIGCTQPRRVAAISVAKRVAEEMGVTL 428 (1042)
T ss_pred hHHHHHHHHHHHhhCcEEEEEecCCCCchhhhHHHHHhcccc--------cCCeeeecCchHHHHHHHHHHHHHHhCCcc
Confidence 345566777777777779999999999998633222222111 122344555999999998887766553222
Q ss_pred CcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhccCCcccccceEEEEecchhhhhcCcH-HHHHHHHHHHhhc
Q psy15524 495 WIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYE-RDIAEFLEILKKQ 573 (930)
Q Consensus 495 ~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~l~~~g~~-~~l~~i~~~l~~~ 573 (930)
...+++-..-++... ....|=+.|.|-|+.-... .-.+.+.+.||+||||. .... +.+.-+++..-..
T Consensus 429 G~~VGYsIRFEdvT~------~~T~IkymTDGiLLrEsL~--d~~L~kYSviImDEAHE---RslNtDilfGllk~~lar 497 (1042)
T KOG0924|consen 429 GDTVGYSIRFEDVTS------EDTKIKYMTDGILLRESLK--DRDLDKYSVIIMDEAHE---RSLNTDILFGLLKKVLAR 497 (1042)
T ss_pred ccccceEEEeeecCC------CceeEEEeccchHHHHHhh--hhhhhheeEEEechhhh---cccchHHHHHHHHHHHHh
Confidence 222333322222222 2345779999999775543 34578899999999994 3222 3344444444444
Q ss_pred CccceEEEEccccCHHHHHHHhhhcCCCEEEEccCCCCcccCccceecCCCceEEEEEcCchhhHHHHHHHHHhhccCCC
Q psy15524 574 KPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALASFILGKCQNVN 653 (930)
Q Consensus 574 ~~~~q~vl~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 653 (930)
+.+.+++..|||+.. +.+...+.+-|.+. +.+.. . ++.-.|...+-++ .....+.+....+.
T Consensus 498 RrdlKliVtSATm~a--~kf~nfFgn~p~f~-IpGRT----------y--PV~~~~~k~p~eD---YVeaavkq~v~Ihl 559 (1042)
T KOG0924|consen 498 RRDLKLIVTSATMDA--QKFSNFFGNCPQFT-IPGRT----------Y--PVEIMYTKTPVED---YVEAAVKQAVQIHL 559 (1042)
T ss_pred hccceEEEeeccccH--HHHHHHhCCCceee-ecCCc----------c--ceEEEeccCchHH---HHHHHHhhheEeec
Confidence 558899999999964 44444433334332 11110 1 1222333333333 33334444444444
Q ss_pred cCCCceEEEEecchhhHHHHHHHHhhhcC-------CCceEEEecCCCCHHHHHHHHHHhhcCCCcEEEeccccccccCC
Q psy15524 654 EDEESKMLVFMATQDMADYHTELLSTVLG-------ENIAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDL 726 (930)
Q Consensus 654 ~~~~~k~iVF~~s~~~~~~~~~~l~~~~~-------~~~~~~~lhg~~~~~~R~~v~~~F~~~~~~vLv~T~~~~~GlDi 726 (930)
....+.++||....+.++-.+..++..+. .++.++.+++.|++.-+.++++.-..|..+++|||++|+..+.+
T Consensus 560 ~~~~GdilIfmtGqediE~t~~~i~~~l~ql~~~~~~~L~vlpiYSQLp~dlQ~kiFq~a~~~vRK~IvATNIAETSLTi 639 (1042)
T KOG0924|consen 560 SGPPGDILIFMTGQEDIECTCDIIKEKLEQLDSAPTTDLAVLPIYSQLPADLQAKIFQKAEGGVRKCIVATNIAETSLTI 639 (1042)
T ss_pred cCCCCCEEEecCCCcchhHHHHHHHHHHHhhhcCCCCceEEEeehhhCchhhhhhhcccCCCCceeEEEeccchhhceee
Confidence 45578999999999877766655544321 26889999999999999999999999999999999999999999
Q ss_pred CCccEEEEec------------------CCCChhhHHhhhcccccCCCCceEEEEeCc
Q psy15524 727 PLVDWIVQYT------------------APSSSTDYVHRVGRTARVGHEGSSLLFLIP 766 (930)
Q Consensus 727 p~v~~VI~~~------------------~p~s~~~y~qr~GRagR~g~~g~~~~~~~~ 766 (930)
|++.+||..+ .|-|...--||.|||||.| +|.|+-+++.
T Consensus 640 ~gI~yVID~Gy~K~kvyn~~~G~D~L~~~pIS~AnA~QRaGRAGRt~-pG~cYRlYTe 696 (1042)
T KOG0924|consen 640 PGIRYVIDTGYCKLKVYNPRIGMDALQIVPISQANADQRAGRAGRTG-PGTCYRLYTE 696 (1042)
T ss_pred cceEEEEecCceeeeecccccccceeEEEechhccchhhccccCCCC-Ccceeeehhh
Confidence 9999999755 5567778889999999987 8999998875
|
|
| >KOG0352|consensus | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.1e-20 Score=194.34 Aligned_cols=163 Identities=21% Similarity=0.286 Sum_probs=120.6
Q ss_pred CCCccC-cHHHHHHHHHhhcC-CcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHH
Q psy15524 1 MNITQV-TTVQQLSIQPILDG-GDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFT 78 (930)
Q Consensus 1 ~g~~~l-~~~Q~~ai~~~~~g-~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~ 78 (930)
||+..+ ++.|++|+..+..+ +|+.|++|||+||++||.+|+|-+ +.-+||++|..+|+.+|.+.+.
T Consensus 15 FGh~kFKs~LQE~A~~c~VK~k~DVyVsMPTGaGKSLCyQLPaL~~------------~gITIV~SPLiALIkDQiDHL~ 82 (641)
T KOG0352|consen 15 FGHKKFKSRLQEQAINCIVKRKCDVYVSMPTGAGKSLCYQLPALVH------------GGITIVISPLIALIKDQIDHLK 82 (641)
T ss_pred hCchhhcChHHHHHHHHHHhccCcEEEeccCCCchhhhhhchHHHh------------CCeEEEehHHHHHHHHHHHHHH
Confidence 466554 89999999998865 689999999999999999999854 2359999999999999999998
Q ss_pred HHhhhcCCceeEEeeCCCchHHHHH------HhcCCCcEEEEChHHHHHHHhcC---CCccCCCccEEEEcccccccccC
Q psy15524 79 KLCKSFTWIVPSWLTGGEKMKSEKA------RIRKGISILVATPGRLLDHCKHT---ETLKFSKVEHLVLDEADRILDQG 149 (930)
Q Consensus 79 ~~~~~~~~~~~~~~~g~~~~~~~~~------~l~~~~~Ilv~Tp~~l~~~l~~~---~~~~l~~l~~vViDE~h~~~~~~ 149 (930)
.+--.. .-+++.-+..+..+ ..+....+++.|||....-.... ....-+.+.|+|||||||+.+||
T Consensus 83 ~LKVp~-----~SLNSKlSt~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn~L~~r~~L~Y~vVDEAHCVSQWG 157 (641)
T KOG0352|consen 83 RLKVPC-----ESLNSKLSTVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLNGLANRDVLRYIVVDEAHCVSQWG 157 (641)
T ss_pred hcCCch-----hHhcchhhHHHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHHHHhhhceeeeEEechhhhHhhhc
Confidence 874322 22333322222222 22334689999999853221110 22234678999999999999998
Q ss_pred --cHHHHHHHHHHHhhcCCCceEEEEEeecCCCc
Q psy15524 150 --YERDIAEFLEILKKQKPQFQSILLSATLTPAT 181 (930)
Q Consensus 150 --~~~~~~~i~~~l~~~~~~~~~i~lSAT~~~~~ 181 (930)
|++++..+ ..|+...+++..++||||.++.+
T Consensus 158 HDFRPDYL~L-G~LRS~~~~vpwvALTATA~~~V 190 (641)
T KOG0352|consen 158 HDFRPDYLTL-GSLRSVCPGVPWVALTATANAKV 190 (641)
T ss_pred cccCcchhhh-hhHHhhCCCCceEEeecccChhH
Confidence 89998765 45677778999999999998744
|
|
| >TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type | Back alignment and domain information |
|---|
Probab=99.82 E-value=9.5e-19 Score=192.70 Aligned_cols=159 Identities=16% Similarity=0.231 Sum_probs=106.4
Q ss_pred HHHHHHHHhhcCCc--EEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHHhhhcC-
Q psy15524 9 VQQLSIQPILDGGD--VLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFT- 85 (930)
Q Consensus 9 ~Q~~ai~~~~~g~~--~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~- 85 (930)
+|.++++++.++.+ ++++||||||||++|++|++.. +.++++++|+++|++|+++++++++..+.
T Consensus 1 hQ~~~~~~~~~~~~~~~~i~apTGsGKT~~~~~~~l~~------------~~~~~~~~P~~aL~~~~~~~~~~~~~~~~~ 68 (357)
T TIGR03158 1 HQVATFEALQSKDADIIFNTAPTGAGKTLAWLTPLLHG------------ENDTIALYPTNALIEDQTEAIKEFVDVFKP 68 (357)
T ss_pred CHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHc------------CCCEEEEeChHHHHHHHHHHHHHHHHhcCC
Confidence 59999999998874 8899999999999999998842 23489999999999999999999985432
Q ss_pred --CceeEEeeCCCchH--HH-----------------HH-HhcCCCcEEEEChHHHHHHHhcC----CCc---cCCCccE
Q psy15524 86 --WIVPSWLTGGEKMK--SE-----------------KA-RIRKGISILVATPGRLLDHCKHT----ETL---KFSKVEH 136 (930)
Q Consensus 86 --~~~~~~~~g~~~~~--~~-----------------~~-~l~~~~~Ilv~Tp~~l~~~l~~~----~~~---~l~~l~~ 136 (930)
...+..+.|..... .. .. .....++|+++||+.+..++... ... .+..+++
T Consensus 69 ~~~~~v~~~~g~~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~p~~l~~llr~~~~~~~~~~~~~~~~~~~ 148 (357)
T TIGR03158 69 ERDVNLLHVSKATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFYTKFST 148 (357)
T ss_pred CCCceEEEecCCchHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEecHHHHHHHHhhhccCcccchhhhhcCCCE
Confidence 23344444431111 00 01 11235889999999997665431 111 1578999
Q ss_pred EEEcccccccccCcHHHH--HHHHHHHhhcCCCceEEEEEeecCC
Q psy15524 137 LVLDEADRILDQGYERDI--AEFLEILKKQKPQFQSILLSATLTP 179 (930)
Q Consensus 137 vViDE~h~~~~~~~~~~~--~~i~~~l~~~~~~~~~i~lSAT~~~ 179 (930)
||+||+|.+..++....+ ......++......+++++|||+++
T Consensus 149 iV~DE~H~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~lSAT~~~ 193 (357)
T TIGR03158 149 VIFDEFHLYDAKQLVGMLFLLAYMQLIRFFECRRKFVFLSATPDP 193 (357)
T ss_pred EEEecccccCcccchhhhhhhHHHHHHHhhhcCCcEEEEecCCCH
Confidence 999999998765422111 1112222221223688999999864
|
subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system. |
| >KOG0920|consensus | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.2e-18 Score=202.48 Aligned_cols=330 Identities=21% Similarity=0.235 Sum_probs=225.9
Q ss_pred CHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHHHHhhccCCC
Q psy15524 416 TTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTW 495 (930)
Q Consensus 416 ~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~ 495 (930)
...+.+.+.++.+++.+++.+.||+|||...---+++..... +....+++--|.|--|.-+++++..--.....
T Consensus 175 ~~~r~~Il~~i~~~qVvvIsGeTGcGKTTQvpQfiLd~~~~~------~~~~~IicTQPRRIsAIsvAeRVa~ER~~~~g 248 (924)
T KOG0920|consen 175 YKMRDTILDAIEENQVVVISGETGCGKTTQVPQFILDEAIES------GAACNIICTQPRRISAISVAERVAKERGESLG 248 (924)
T ss_pred HHHHHHHHHHHHhCceEEEeCCCCCCchhhhhHHHHHHHHhc------CCCCeEEecCCchHHHHHHHHHHHHHhccccC
Confidence 345777888888888899999999999997666677766552 24566788889998888888776554433333
Q ss_pred cceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhccCCcccccceEEEEecchhhhhcCcH-HHHHHHHHHHhhcC
Q psy15524 496 IVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYE-RDIAEFLEILKKQK 574 (930)
Q Consensus 496 ~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~l~~~g~~-~~l~~i~~~l~~~~ 574 (930)
..+++-.+..+... ....+++||.|-|+..+.. ...+..+.++|+||+|. .+.. +.+--+++.+-...
T Consensus 249 ~~VGYqvrl~~~~s------~~t~L~fcTtGvLLr~L~~--~~~l~~vthiivDEVHE---R~i~~DflLi~lk~lL~~~ 317 (924)
T KOG0920|consen 249 EEVGYQVRLESKRS------RETRLLFCTTGVLLRRLQS--DPTLSGVTHIIVDEVHE---RSINTDFLLILLKDLLPRN 317 (924)
T ss_pred CeeeEEEeeecccC------CceeEEEecHHHHHHHhcc--CcccccCceeeeeeEEE---ccCCcccHHHHHHHHhhhC
Confidence 45565555544333 2367999999999999876 45678999999999994 3322 22233334444445
Q ss_pred ccceEEEEccccCHHHHHHHhhhcCCCEEEEccCCCCcc----------------cCccceecCCCc---eEEEEEcCch
Q psy15524 575 PQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIH----------------NTTDSLVIPDSL---KQHFIVTPPK 635 (930)
Q Consensus 575 ~~~q~vl~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~----------------~~~~~~~~~~~~---~~~~~~~~~~ 635 (930)
++.++++||||+.. +..+.++.....+.+.+..-.. ........+..- ........++
T Consensus 318 p~LkvILMSAT~da---e~fs~YF~~~pvi~i~grtfpV~~~fLEDil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (924)
T KOG0920|consen 318 PDLKVILMSATLDA---ELFSDYFGGCPVITIPGRTFPVKEYFLEDILSKTGYVSEDDSARSGPERSQLRLARLKLWEPE 394 (924)
T ss_pred CCceEEEeeeecch---HHHHHHhCCCceEeecCCCcchHHHHHHHHHHHhcccccccccccccccCccccccchhcccc
Confidence 79999999999973 4445555555555443321100 000000000000 0001111222
Q ss_pred hhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhc--CC--CceEEEecCCCCHHHHHHHHHHhhcCCC
Q psy15524 636 LRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVL--GE--NIAFFKLHGSMSQSERTEVFKTFRSVKS 711 (930)
Q Consensus 636 ~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~--~~--~~~~~~lhg~~~~~~R~~v~~~F~~~~~ 711 (930)
.....+.+.+...+.. ...+.+|||.+..++...+.+.|.... .. .+.+..+|+.|+..+++.++..--.|..
T Consensus 395 id~~Li~~li~~I~~~---~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~s~eQ~~VF~~pp~g~R 471 (924)
T KOG0920|consen 395 IDYDLIEDLIEYIDER---EFEGAILVFLPGWEEILQLKELLEVNLPFADSLKFAILPLHSSIPSEEQQAVFKRPPKGTR 471 (924)
T ss_pred ccHHHHHHHHHhcccC---CCCceEEEEcCCHHHHHHHHHHhhhccccccccceEEEeccccCChHHHHHhcCCCCCCcc
Confidence 3444455555544433 347899999999999999988886421 11 3778899999999999999999999999
Q ss_pred cEEEeccccccccCCCCccEEEEec--------CC----------CChhhHHhhhcccccCCCCceEEEEeCcccH
Q psy15524 712 GVLICTDVAARGLDLPLVDWIVQYT--------AP----------SSSTDYVHRVGRTARVGHEGSSLLFLIPSEV 769 (930)
Q Consensus 712 ~vLv~T~~~~~GlDip~v~~VI~~~--------~p----------~s~~~y~qr~GRagR~g~~g~~~~~~~~~e~ 769 (930)
+|+++|++|+..|.|++|-.||..+ +- -|...-.||.|||||. .+|.|+-+++....
T Consensus 472 KIIlaTNIAETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGRv-~~G~cy~L~~~~~~ 546 (924)
T KOG0920|consen 472 KIILATNIAETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGRV-RPGICYHLYTRSRY 546 (924)
T ss_pred hhhhhhhhHhhcccccCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhcccccCc-cCCeeEEeechhhh
Confidence 9999999999999999999999754 22 2456778999999997 48999999986533
|
|
| >PRK12901 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.3e-18 Score=199.44 Aligned_cols=130 Identities=21% Similarity=0.215 Sum_probs=107.9
Q ss_pred EEcCchhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHHHHHHHHHHhhcC
Q psy15524 630 IVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSV 709 (930)
Q Consensus 630 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~v~~~F~~~ 709 (930)
+......|+.++...+..... .++|+||-+.|++..+.++++|... +++...|++.....+...|-++-+.|
T Consensus 606 vy~t~~eK~~Aii~ei~~~~~-----~GrPVLVGT~SVe~SE~lS~~L~~~---gI~H~VLNAK~h~~EAeIVA~AG~~G 677 (1112)
T PRK12901 606 VYKTKREKYNAVIEEITELSE-----AGRPVLVGTTSVEISELLSRMLKMR---KIPHNVLNAKLHQKEAEIVAEAGQPG 677 (1112)
T ss_pred EecCHHHHHHHHHHHHHHHHH-----CCCCEEEEeCcHHHHHHHHHHHHHc---CCcHHHhhccchhhHHHHHHhcCCCC
Confidence 344556777787777776533 2889999999999999999999874 78877888887777777777777777
Q ss_pred CCcEEEeccccccccCCC---Cc-----cEEEEecCCCChhhHHhhhcccccCCCCceEEEEeCcccH
Q psy15524 710 KSGVLICTDVAARGLDLP---LV-----DWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPSEV 769 (930)
Q Consensus 710 ~~~vLv~T~~~~~GlDip---~v-----~~VI~~~~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~e~ 769 (930)
. |.|||++|+||.||. .| -+||....+.|..--.|..||+||.|.+|.+.+|++-++.
T Consensus 678 a--VTIATNMAGRGTDIkLg~~V~e~GGL~VIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSLEDd 743 (1112)
T PRK12901 678 T--VTIATNMAGRGTDIKLSPEVKAAGGLAIIGTERHESRRVDRQLRGRAGRQGDPGSSQFYVSLEDN 743 (1112)
T ss_pred c--EEEeccCcCCCcCcccchhhHHcCCCEEEEccCCCcHHHHHHHhcccccCCCCCcceEEEEcccH
Confidence 6 999999999999995 33 3899999999999999999999999999999999986543
|
|
| >TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.8e-18 Score=202.00 Aligned_cols=314 Identities=18% Similarity=0.176 Sum_probs=183.8
Q ss_pred CCHHHHHhHHhhhc----------CCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHH
Q psy15524 415 VTTVQQLSIQPILD----------GGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLE 484 (930)
Q Consensus 415 ~~~iQ~~~i~~il~----------~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~ 484 (930)
+++.|..|+..+.. .+..++.++||||||++++..+...+.. ....++|||+|+.+|..|+.+
T Consensus 239 ~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la~~l~~~-------~~~~~vl~lvdR~~L~~Q~~~ 311 (667)
T TIGR00348 239 QRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAARKALEL-------LKNPKVFFVVDRRELDYQLMK 311 (667)
T ss_pred hHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHHHHHHhh-------cCCCeEEEEECcHHHHHHHHH
Confidence 67889988877642 1458999999999999866555443321 346789999999999999999
Q ss_pred HHHHhhccCCCcceEEEeCCCchHHHHHHHh-cCCcEEEECchhHHHhhhcc-CCcccccc-eEEEEecchhhhhcCcHH
Q psy15524 485 IFTKLCKSFTWIVPSWLTGGEKMKSEKARIR-KGISILVATPGRLLDHCKHT-ETLKFSKV-EHLVLDEADRILDQGYER 561 (930)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~-~~~~Ilv~Tp~rl~~~l~~~-~~~~~~~l-~~lVlDEah~l~~~g~~~ 561 (930)
.|..+..... .+..+.......+. ....|+|+|..++...+... ..+...+- -+||+||||+.....+.
T Consensus 312 ~f~~~~~~~~-------~~~~s~~~L~~~l~~~~~~iivtTiQk~~~~~~~~~~~~~~~~~~~lvIvDEaHrs~~~~~~- 383 (667)
T TIGR00348 312 EFQSLQKDCA-------ERIESIAELKRLLEKDDGGIIITTIQKFDKKLKEEEEKFPVDRKEVVVIFDEAHRSQYGELA- 383 (667)
T ss_pred HHHhhCCCCC-------cccCCHHHHHHHHhCCCCCEEEEEhHHhhhhHhhhhhccCCCCCCEEEEEEcCccccchHHH-
Confidence 9988763210 11112222222232 23689999999987543321 11111111 28999999986533322
Q ss_pred HHHHHHHHHhhcCccceEEEEccccCHHH----HHHHhhhcCCCEEEEccCCCCcccCccceecCC-----Cc-------
Q psy15524 562 DIAEFLEILKKQKPQFQSILLSATLTPAV----QRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPD-----SL------- 625 (930)
Q Consensus 562 ~l~~i~~~l~~~~~~~q~vl~SAT~~~~~----~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-----~~------- 625 (930)
..+...+ ++...++||||+-... ....+....+++. .+.... ...+....|- ..
T Consensus 384 --~~l~~~~----p~a~~lGfTaTP~~~~d~~t~~~f~~~fg~~i~--~Y~~~~--AI~dG~~~~i~Y~~~~~~~~~~~~ 453 (667)
T TIGR00348 384 --KNLKKAL----KNASFFGFTGTPIFKKDRDTSLTFAYVFGRYLH--RYFITD--AIRDGLTVKIDYEDRLPEDHLDRK 453 (667)
T ss_pred --HHHHhhC----CCCcEEEEeCCCcccccccccccccCCCCCeEE--EeeHHH--HhhcCCeeeEEEEecchhhccChH
Confidence 2222333 3568999999985321 1111110112111 000000 0000000000 00
Q ss_pred ------eEEE-----------------------EEcCchhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHH
Q psy15524 626 ------KQHF-----------------------IVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTEL 676 (930)
Q Consensus 626 ------~~~~-----------------------~~~~~~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~ 676 (930)
...+ .......+....+..+..+..........+++|||.++.+|..+++.
T Consensus 454 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ia~~i~~h~~~~~~~~~~kamvv~~sr~~a~~~~~~ 533 (667)
T TIGR00348 454 KLDAFFDEIFELLPERIREITKESLKEKLQKTKKILFNEDRLESIAKDIAEHYAKFKELFKFKAMVVAISRYACVEEKNA 533 (667)
T ss_pred HHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHhhhcChHHHHHHHHHHHHHHHHhhhcccCceeEEEecHHHHHHHHHH
Confidence 0000 00011112223333333332222222258999999999999999998
Q ss_pred HhhhcCCC--ceEEEecCCCCHH---------------------HHHHHHHHhhc-CCCcEEEeccccccccCCCCccEE
Q psy15524 677 LSTVLGEN--IAFFKLHGSMSQS---------------------ERTEVFKTFRS-VKSGVLICTDVAARGLDLPLVDWI 732 (930)
Q Consensus 677 l~~~~~~~--~~~~~lhg~~~~~---------------------~R~~v~~~F~~-~~~~vLv~T~~~~~GlDip~v~~V 732 (930)
|.+..+.. .....++++.... ....+.++|++ +..+|||++|++..|+|.|.++++
T Consensus 534 l~~~~~~~~~~~~vv~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fk~~~~~~ilIVvdmllTGFDaP~l~tL 613 (667)
T TIGR00348 534 LDEELNEKFEASAIVMTGKESDDAEIRDYNKHIRTKFDKSDGFEIYYKDLERFKKEENPKLLIVVDMLLTGFDAPILNTL 613 (667)
T ss_pred HHhhcccccCCeeEEecCCccchhHHHHHHHHhccccccchhhhHHHHHHHHhcCCCCceEEEEEcccccccCCCccceE
Confidence 87765432 3344455543322 22468889976 678999999999999999999988
Q ss_pred EEecCCCChhhHHhhhcccccC
Q psy15524 733 VQYTAPSSSTDYVHRVGRTARV 754 (930)
Q Consensus 733 I~~~~p~s~~~y~qr~GRagR~ 754 (930)
+..-+-.+ ..++|.+||+.|.
T Consensus 614 yldKplk~-h~LlQai~R~nR~ 634 (667)
T TIGR00348 614 YLDKPLKY-HGLLQAIARTNRI 634 (667)
T ss_pred EEeccccc-cHHHHHHHHhccc
Confidence 87776555 4689999999994
|
Members of this family are assumed to differ from each other in DNA site specificity. |
| >PHA02653 RNA helicase NPH-II; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.4e-18 Score=199.96 Aligned_cols=232 Identities=16% Similarity=0.112 Sum_probs=149.1
Q ss_pred cHHHHHHHHHhhcCCcEEEEcCCCChHHHH---------HHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHH
Q psy15524 7 TTVQQLSIQPILDGGDVLVRSQTGSGKTLA---------YAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIF 77 (930)
Q Consensus 7 ~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~---------~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~ 77 (930)
..+|+++++.+++|++++++|+||||||.+ |++|.+..+..... ...+.++++++|++|||.|+..++
T Consensus 166 ~~iQ~qil~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~~---~~~~~~ilvt~PrreLa~qi~~~i 242 (675)
T PHA02653 166 PDVQLKIFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKIDP---NFIERPIVLSLPRVALVRLHSITL 242 (675)
T ss_pred HHHHHHHHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhccc---ccCCcEEEEECcHHHHHHHHHHHH
Confidence 357999999999999999999999999997 44555555432110 123567999999999999999998
Q ss_pred HHHhhh--cCCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCcHHHHH
Q psy15524 78 TKLCKS--FTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIA 155 (930)
Q Consensus 78 ~~~~~~--~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~~~~~~ 155 (930)
.+..+. .....+...+|+... .......+..+|+++|++. ....++++++|||||||.+...+ +.+.
T Consensus 243 ~~~vg~~~~~g~~v~v~~Gg~~~-~~~~t~~k~~~Ilv~T~~L--------~l~~L~~v~~VVIDEaHEr~~~~--DllL 311 (675)
T PHA02653 243 LKSLGFDEIDGSPISLKYGSIPD-ELINTNPKPYGLVFSTHKL--------TLNKLFDYGTVIIDEVHEHDQIG--DIII 311 (675)
T ss_pred HHHhCccccCCceEEEEECCcch-HHhhcccCCCCEEEEeCcc--------cccccccCCEEEccccccCccch--hHHH
Confidence 876543 223456677888763 2222223367999999752 11247889999999999886544 1121
Q ss_pred HHHHHHhhcCCCceEEEEEeecCCCccccccccccccccccchhhhhhhhhhhccchhhHHHHHHHHhhcCcCceEEEEe
Q psy15524 156 EFLEILKKQKPQFQSILLSATLTPATCWCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLS 235 (930)
Q Consensus 156 ~i~~~l~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~de~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~s 235 (930)
.++..+ . ...+|+++||
T Consensus 312 ~llk~~-------------------------------------------------------------~--~~~rq~ILmS 328 (675)
T PHA02653 312 AVARKH-------------------------------------------------------------I--DKIRSLFLMT 328 (675)
T ss_pred HHHHHh-------------------------------------------------------------h--hhcCEEEEEc
Confidence 211111 0 0113788888
Q ss_pred cccchHHHHhhhccccCCeeeccCCcccccCCCcccccCCCceeEEEEcC----------cchhHHHHHHHHhhhccccc
Q psy15524 236 ATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTP----------PKLRLVALASFILGKCQNVN 305 (930)
Q Consensus 236 at~~~~~~~l~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----------~~~k~~~l~~~l~~~~~~~~ 305 (930)
||++..++.+ ..++.++..+.+.... ...+.+.|.... ...+. .+...+... .
T Consensus 329 ATl~~dv~~l-~~~~~~p~~I~I~grt-----------~~pV~~~yi~~~~~~~~~~~y~~~~k~-~~l~~L~~~----~ 391 (675)
T PHA02653 329 ATLEDDRDRI-KEFFPNPAFVHIPGGT-----------LFPISEVYVKNKYNPKNKRAYIEEEKK-NIVTALKKY----T 391 (675)
T ss_pred cCCcHhHHHH-HHHhcCCcEEEeCCCc-----------CCCeEEEEeecCcccccchhhhHHHHH-HHHHHHHHh----h
Confidence 8887777666 4567777666553211 123455554321 11122 223333210 1
Q ss_pred cCCcceEEEEEecccchhhhHHHHhhh
Q psy15524 306 EDEESKMLVFMATQDMADYHTELLSTK 332 (930)
Q Consensus 306 ~~~~~~~iVF~~s~~~~~~l~~~L~~~ 332 (930)
...++.+||||+++.+++.+++.|.+.
T Consensus 392 ~~~~g~iLVFlpg~~ei~~l~~~L~~~ 418 (675)
T PHA02653 392 PPKGSSGIVFVASVSQCEEYKKYLEKR 418 (675)
T ss_pred cccCCcEEEEECcHHHHHHHHHHHHhh
Confidence 224568999999999999999999765
|
|
| >COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.79 E-value=2e-17 Score=176.15 Aligned_cols=165 Identities=27% Similarity=0.357 Sum_probs=128.1
Q ss_pred cceEEEEccccCHHHHHHHhhhcCCCEEEEccCCCCcccCccceecCCCc-eEEEEEcCchhhHHHHHHHHHhhccCCCc
Q psy15524 576 QFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSL-KQHFIVTPPKLRLVALASFILGKCQNVNE 654 (930)
Q Consensus 576 ~~q~vl~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 654 (930)
..|++++|||+.+.-...... .+ .+.+..|..+ .....+-|.......|...+......
T Consensus 386 ~~q~i~VSATPg~~E~e~s~~----~v-------------veQiIRPTGLlDP~ievRp~~~QvdDL~~EI~~r~~~--- 445 (663)
T COG0556 386 IPQTIYVSATPGDYELEQSGG----NV-------------VEQIIRPTGLLDPEIEVRPTKGQVDDLLSEIRKRVAK--- 445 (663)
T ss_pred cCCEEEEECCCChHHHHhccC----ce-------------eEEeecCCCCCCCceeeecCCCcHHHHHHHHHHHHhc---
Confidence 469999999997743322110 00 1111222222 22334455566777777777764432
Q ss_pred CCCceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHHHHHHHHHHhhcCCCcEEEeccccccccCCCCccEEEE
Q psy15524 655 DEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQ 734 (930)
Q Consensus 655 ~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~v~~~F~~~~~~vLv~T~~~~~GlDip~v~~VI~ 734 (930)
+.+++|-+-|+++++.+.++|.+. |+.+..+|++...-+|.+++++.+.|..+|||.-+.+-+|+|+|.|.+|..
T Consensus 446 --~eRvLVTtLTKkmAEdLT~Yl~e~---gikv~YlHSdidTlER~eIirdLR~G~~DvLVGINLLREGLDiPEVsLVAI 520 (663)
T COG0556 446 --NERVLVTTLTKKMAEDLTEYLKEL---GIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAI 520 (663)
T ss_pred --CCeEEEEeehHHHHHHHHHHHHhc---CceEEeeeccchHHHHHHHHHHHhcCCccEEEeehhhhccCCCcceeEEEE
Confidence 679999999999999999999986 999999999999999999999999999999999999999999999999998
Q ss_pred ecCC-----CChhhHHhhhcccccCCCCceEEEEeCc
Q psy15524 735 YTAP-----SSSTDYVHRVGRTARVGHEGSSLLFLIP 766 (930)
Q Consensus 735 ~~~p-----~s~~~y~qr~GRagR~g~~g~~~~~~~~ 766 (930)
.|.. .|-.+.+|-+|||+|. -.|.++++-..
T Consensus 521 lDADKeGFLRse~SLIQtIGRAARN-~~GkvIlYAD~ 556 (663)
T COG0556 521 LDADKEGFLRSERSLIQTIGRAARN-VNGKVILYADK 556 (663)
T ss_pred eecCccccccccchHHHHHHHHhhc-cCCeEEEEchh
Confidence 8854 4888999999999994 47888877653
|
|
| >COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.79 E-value=6.4e-18 Score=190.03 Aligned_cols=316 Identities=21% Similarity=0.219 Sum_probs=199.0
Q ss_pred CCCCCCHHHHHhHHhhh----cCCc-EEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHH
Q psy15524 411 NITQVTTVQQLSIQPIL----DGGD-VLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEI 485 (930)
Q Consensus 411 ~~~~~~~iQ~~~i~~il----~~~d-~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~ 485 (930)
.-..++.+|..||..+. +|++ ++++|.||+|||.+ .+.++.+|.+ .+.-+++|+|+-+++|..|.+..
T Consensus 162 s~i~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrT-Aiaii~rL~r------~~~~KRVLFLaDR~~Lv~QA~~a 234 (875)
T COG4096 162 SAIGPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRT-AIAIIDRLIK------SGWVKRVLFLADRNALVDQAYGA 234 (875)
T ss_pred ccccchHHHHHHHHHHHHHHhcCCceEEEEEecCCCccee-HHHHHHHHHh------cchhheeeEEechHHHHHHHHHH
Confidence 44578899999987755 4554 99999999999998 4566666665 24567899999999999999998
Q ss_pred HHHhhccCCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhcc----CCcccccceEEEEecchhhhhcCcHH
Q psy15524 486 FTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHT----ETLKFSKVEHLVLDEADRILDQGYER 561 (930)
Q Consensus 486 ~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~----~~~~~~~l~~lVlDEah~l~~~g~~~ 561 (930)
+..+...... ...+.+-.. ...+.|.++|...+....... ..+....+++||+|||||=. ..
T Consensus 235 f~~~~P~~~~--~n~i~~~~~--------~~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaHRgi----~~ 300 (875)
T COG4096 235 FEDFLPFGTK--MNKIEDKKG--------DTSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAHRGI----YS 300 (875)
T ss_pred HHHhCCCccc--eeeeecccC--------CcceeEEEeehHHHHhhhhccccccccCCCCceeEEEechhhhhH----Hh
Confidence 8887643221 122222111 114789999999887665543 23445679999999999744 33
Q ss_pred HHHHHHHHHhhcCccceEEEEccccCHHHHHHHhhhc-CCCEE--------------------EEccCCCCcccCccc--
Q psy15524 562 DIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTL-QNPIQ--------------------IDAADSTDIHNTTDS-- 618 (930)
Q Consensus 562 ~l~~i~~~l~~~~~~~q~vl~SAT~~~~~~~l~~~~~-~~~~~--------------------i~~~~~~~~~~~~~~-- 618 (930)
....|+..+.. -+++++||+.+.+..-.-.++ .+|+. +.+............
T Consensus 301 ~~~~I~dYFdA-----~~~gLTATP~~~~d~~T~~~F~g~Pt~~YsleeAV~DGfLvpy~vi~i~~~~~~~G~~~~~~se 375 (875)
T COG4096 301 EWSSILDYFDA-----ATQGLTATPKETIDRSTYGFFNGEPTYAYSLEEAVEDGFLVPYKVIRIDTDFDLDGWKPDAGSE 375 (875)
T ss_pred hhHHHHHHHHH-----HHHhhccCcccccccccccccCCCcceeecHHHHhhccccCCCCceEEeeeccccCcCcCccch
Confidence 34466666643 224459998763322111122 22222 111111000000000
Q ss_pred --eecCCCc---eEEEEEcC------chhhHHHHHHHHHhhccCC-CcCCCceEEEEecchhhHHHHHHHHhhhcCC--C
Q psy15524 619 --LVIPDSL---KQHFIVTP------PKLRLVALASFILGKCQNV-NEDEESKMLVFMATQDMADYHTELLSTVLGE--N 684 (930)
Q Consensus 619 --~~~~~~~---~~~~~~~~------~~~~~~~l~~~l~~~~~~~-~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~--~ 684 (930)
-...+.+ .+.|...+ -..........+..++... ....-+|+||||.+.++++++.+.|....++ +
T Consensus 376 rek~~g~~i~~dd~~~~~~d~dr~~v~~~~~~~V~r~~~~~l~~~~~g~~~~KTIvFa~n~dHAe~i~~~~~~~ype~~~ 455 (875)
T COG4096 376 REKLQGEAIDEDDQNFEARDFDRTLVIPFRTETVARELTEYLKRGATGDEIGKTIVFAKNHDHAERIREALVNEYPEYNG 455 (875)
T ss_pred hhhhhccccCcccccccccccchhccccchHHHHHHHHHHHhccccCCCccCceEEEeeCcHHHHHHHHHHHHhCccccC
Confidence 0000000 11111111 1123334444555554432 1122579999999999999999999887654 3
Q ss_pred ceEEEecCCCCHHHHHHHHHHhhc--CCCcEEEeccccccccCCCCccEEEEecCCCChhhHHhhhcccccC
Q psy15524 685 IAFFKLHGSMSQSERTEVFKTFRS--VKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARV 754 (930)
Q Consensus 685 ~~~~~lhg~~~~~~R~~v~~~F~~--~~~~vLv~T~~~~~GlDip~v~~VI~~~~p~s~~~y~qr~GRagR~ 754 (930)
--+..+.|+-.+. ...++.|.. .--+|.++.+++..|+|+|.|..+|.+-.-.|...|.||+||+-|.
T Consensus 456 ~~a~~IT~d~~~~--q~~Id~f~~ke~~P~IaitvdlL~TGiDvpev~nlVF~r~VrSktkF~QMvGRGTRl 525 (875)
T COG4096 456 RYAMKITGDAEQA--QALIDNFIDKEKYPRIAITVDLLTTGVDVPEVVNLVFDRKVRSKTKFKQMVGRGTRL 525 (875)
T ss_pred ceEEEEeccchhh--HHHHHHHHhcCCCCceEEehhhhhcCCCchheeeeeehhhhhhHHHHHHHhcCcccc
Confidence 3456677775443 445566654 2346899999999999999999999999999999999999999996
|
|
| >KOG0351|consensus | Back alignment and domain information |
|---|
Probab=99.79 E-value=8.4e-19 Score=207.53 Aligned_cols=162 Identities=22% Similarity=0.272 Sum_probs=125.8
Q ss_pred CCCccCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHH
Q psy15524 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKL 80 (930)
Q Consensus 1 ~g~~~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~ 80 (930)
||...++|-|.+||..++.|+|++|.+|||+||++||.+|++-. ++.+|||+|.++|+++|...+...
T Consensus 260 Fg~~~FR~~Q~eaI~~~l~Gkd~fvlmpTG~GKSLCYQlPA~l~------------~gitvVISPL~SLm~DQv~~L~~~ 327 (941)
T KOG0351|consen 260 FGHKGFRPNQLEAINATLSGKDCFVLMPTGGGKSLCYQLPALLL------------GGVTVVISPLISLMQDQVTHLSKK 327 (941)
T ss_pred hccccCChhHHHHHHHHHcCCceEEEeecCCceeeEeecccccc------------CCceEEeccHHHHHHHHHHhhhhc
Confidence 58889999999999999999999999999999999999998732 346999999999999999888444
Q ss_pred hhhcCCceeEEeeCCCchHHH---HHHhcC---CCcEEEEChHHHHHHHhcC-CCccCCC---ccEEEEcccccccccC-
Q psy15524 81 CKSFTWIVPSWLTGGEKMKSE---KARIRK---GISILVATPGRLLDHCKHT-ETLKFSK---VEHLVLDEADRILDQG- 149 (930)
Q Consensus 81 ~~~~~~~~~~~~~g~~~~~~~---~~~l~~---~~~Ilv~Tp~~l~~~l~~~-~~~~l~~---l~~vViDE~h~~~~~~- 149 (930)
. +....+.++.....+ .+.+.. .++|++.|||.+...-.-. ....+.. +.++|||||||+.+||
T Consensus 328 ~-----I~a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vIDEAHCVSqWgH 402 (941)
T KOG0351|consen 328 G-----IPACFLSSIQTAAERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFVIDEAHCVSQWGH 402 (941)
T ss_pred C-----cceeeccccccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEecHHHHhhhhcc
Confidence 3 556667777665433 233333 3799999999986432211 1222444 8999999999999998
Q ss_pred -cHHHHHHHHHHHhhcCCCceEEEEEeecCCC
Q psy15524 150 -YERDIAEFLEILKKQKPQFQSILLSATLTPA 180 (930)
Q Consensus 150 -~~~~~~~i~~~l~~~~~~~~~i~lSAT~~~~ 180 (930)
|++++.++-......+ .+.+|+||||.+..
T Consensus 403 dFRp~Yk~l~~l~~~~~-~vP~iALTATAT~~ 433 (941)
T KOG0351|consen 403 DFRPSYKRLGLLRIRFP-GVPFIALTATATER 433 (941)
T ss_pred cccHHHHHHHHHHhhCC-CCCeEEeehhccHH
Confidence 9999988766555444 48999999999753
|
|
| >KOG0926|consensus | Back alignment and domain information |
|---|
Probab=99.78 E-value=7.6e-18 Score=185.85 Aligned_cols=311 Identities=21% Similarity=0.242 Sum_probs=200.3
Q ss_pred HhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHHHHhhccCCCcceEE
Q psy15524 421 LSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSW 500 (930)
Q Consensus 421 ~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~ 500 (930)
+.+.+|..+--+|||+.||||||...--.+++.-..... ..++..+=|--|.|--|.-++++...-+..++.- +++
T Consensus 263 ~IMEaIn~n~vvIIcGeTGsGKTTQvPQFLYEAGf~s~~---~~~~gmIGITqPRRVAaiamAkRVa~EL~~~~~e-VsY 338 (1172)
T KOG0926|consen 263 RIMEAINENPVVIICGETGSGKTTQVPQFLYEAGFASEQ---SSSPGMIGITQPRRVAAIAMAKRVAFELGVLGSE-VSY 338 (1172)
T ss_pred HHHHHhhcCCeEEEecCCCCCccccchHHHHHcccCCcc---CCCCCeeeecCchHHHHHHHHHHHHHHhccCccc-eeE
Confidence 344455445558999999999998532223332222110 1122334455699988888877665544433322 222
Q ss_pred E--eCCCchHHHHHHHhcCCcEEEECchhHHHhhhccCCcccccceEEEEecchhhhhcCcH-----HHHHHHHHHHhhc
Q psy15524 501 L--TGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYE-----RDIAEFLEILKKQ 573 (930)
Q Consensus 501 ~--~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~l~~~g~~-----~~l~~i~~~l~~~ 573 (930)
. +.|+ +.....|-++|.|-|+.-+.+ .+.+...+.||+||||. .... ..+.+|+..-.+.
T Consensus 339 qIRfd~t--------i~e~T~IkFMTDGVLLrEi~~--DflL~kYSvIIlDEAHE---RSvnTDILiGmLSRiV~LR~k~ 405 (1172)
T KOG0926|consen 339 QIRFDGT--------IGEDTSIKFMTDGVLLREIEN--DFLLTKYSVIILDEAHE---RSVNTDILIGMLSRIVPLRQKY 405 (1172)
T ss_pred EEEeccc--------cCCCceeEEecchHHHHHHHH--hHhhhhceeEEechhhh---ccchHHHHHHHHHHHHHHHHHH
Confidence 2 2222 123568999999999988775 57789999999999994 2211 2334444433333
Q ss_pred Cc------cceEEEEccccCHHHHHHHh--hhcC-CCEEEEccCCCCcccCccceecCCCceEEEEEcCchhhHHHHHHH
Q psy15524 574 KP------QFQSILLSATLTPAVQRLAG--MTLQ-NPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALASF 644 (930)
Q Consensus 574 ~~------~~q~vl~SAT~~~~~~~l~~--~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 644 (930)
.. ..+.+.||||+. +.++.. ..+. -|..|.+... ..| +.-++ ........+.+.
T Consensus 406 ~ke~~~~kpLKLIIMSATLR--VsDFtenk~LFpi~pPlikVdAR----------QfP--VsIHF---~krT~~DYi~eA 468 (1172)
T KOG0926|consen 406 YKEQCQIKPLKLIIMSATLR--VSDFTENKRLFPIPPPLIKVDAR----------QFP--VSIHF---NKRTPDDYIAEA 468 (1172)
T ss_pred hhhhcccCceeEEEEeeeEE--ecccccCceecCCCCceeeeecc----------cCc--eEEEe---ccCCCchHHHHH
Confidence 22 578899999984 222221 1111 1112222111 011 11111 122223455556
Q ss_pred HHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCC-----------------------------------------
Q psy15524 645 ILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGE----------------------------------------- 683 (930)
Q Consensus 645 l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~----------------------------------------- 683 (930)
.+..|..+..-+.+.+|||+....+++++++.|++.++.
T Consensus 469 frKtc~IH~kLP~G~ILVFvTGQqEV~qL~~kLRK~~p~~f~~~k~~k~~k~~~e~k~~~s~~~~~~k~~dfe~Ed~~~~ 548 (1172)
T KOG0926|consen 469 FRKTCKIHKKLPPGGILVFVTGQQEVDQLCEKLRKRFPESFGGVKMKKNVKAFKELKENPSDIGDSNKTDDFEEEDMYES 548 (1172)
T ss_pred HHHHHHHhhcCCCCcEEEEEeChHHHHHHHHHHHhhCccccccchhhhhhhhccccccchhhhccCcccccchhcccccc
Confidence 666666666666889999999999999999988776321
Q ss_pred -------------------------------------------------------CceEEEecCCCCHHHHHHHHHHhhc
Q psy15524 684 -------------------------------------------------------NIAFFKLHGSMSQSERTEVFKTFRS 708 (930)
Q Consensus 684 -------------------------------------------------------~~~~~~lhg~~~~~~R~~v~~~F~~ 708 (930)
..-+..|++-++.+++.++++.--.
T Consensus 549 ~ed~d~~~~~~~~~~~raa~~~~~De~~~~nge~e~d~~e~~~E~~~~~~~~~~~pLyvLPLYSLLs~~~Q~RVF~~~p~ 628 (1172)
T KOG0926|consen 549 DEDIDQELVDSGFASLRAAFNALADENGSVNGEPEKDESEEGQEAEQGKGKFSPGPLYVLPLYSLLSTEKQMRVFDEVPK 628 (1172)
T ss_pred hhhhhhhhhcccchhhhhhhhccccccccccCCcccchhhhchhhhhccCCCCCCceEEeehhhhcCHHHhhhhccCCCC
Confidence 2346778888999999999999999
Q ss_pred CCCcEEEeccccccccCCCCccEEEEecCC------------------CChhhHHhhhcccccCCCCceEEEEeCc
Q psy15524 709 VKSGVLICTDVAARGLDLPLVDWIVQYTAP------------------SSSTDYVHRVGRTARVGHEGSSLLFLIP 766 (930)
Q Consensus 709 ~~~~vLv~T~~~~~GlDip~v~~VI~~~~p------------------~s~~~y~qr~GRagR~g~~g~~~~~~~~ 766 (930)
|..-++|+|++|+..+.||+|..||..+.- .|...--||+|||||.| +|.|+-+++.
T Consensus 629 g~RLcVVaTNVAETSLTIPgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQRAGRAGRtg-pGHcYRLYSS 703 (1172)
T KOG0926|consen 629 GERLCVVATNVAETSLTIPGIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASADQRAGRAGRTG-PGHCYRLYSS 703 (1172)
T ss_pred CceEEEEeccchhcccccCCeeEEEeccchhhhccccccCceeEEEEeeeccccchhccccCCCC-CCceeehhhh
Confidence 999999999999999999999999986522 14455579999999998 8999988873
|
|
| >PHA02558 uvsW UvsW helicase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=4.4e-18 Score=196.24 Aligned_cols=149 Identities=17% Similarity=0.128 Sum_probs=109.4
Q ss_pred ccCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHHhhh
Q psy15524 4 TQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKS 83 (930)
Q Consensus 4 ~~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~ 83 (930)
..|+++|++|++.++.+.+.++++|||+|||+++...+...+.. ...++|||+||++|+.|+.+++++++..
T Consensus 113 ~~~r~~Q~~av~~~l~~~~~il~apTGsGKT~i~~~l~~~~~~~--------~~~~vLilvpt~eL~~Q~~~~l~~~~~~ 184 (501)
T PHA02558 113 IEPHWYQYDAVYEGLKNNRRLLNLPTSAGKSLIQYLLSRYYLEN--------YEGKVLIIVPTTSLVTQMIDDFVDYRLF 184 (501)
T ss_pred CCCCHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHHHhc--------CCCeEEEEECcHHHHHHHHHHHHHhccc
Confidence 47999999999999999999999999999999875533222221 1336999999999999999999987643
Q ss_pred cCCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCcHHHHHHHHHHHhh
Q psy15524 84 FTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKK 163 (930)
Q Consensus 84 ~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~~~~~~~i~~~l~~ 163 (930)
.. .....+.+|.... ...+|+|+||+++.+... ..++++++||+||||++.... +..++..++.
T Consensus 185 ~~-~~~~~i~~g~~~~-------~~~~I~VaT~qsl~~~~~----~~~~~~~~iIvDEaH~~~~~~----~~~il~~~~~ 248 (501)
T PHA02558 185 PR-EAMHKIYSGTAKD-------TDAPIVVSTWQSAVKQPK----EWFDQFGMVIVDECHLFTGKS----LTSIITKLDN 248 (501)
T ss_pred cc-cceeEEecCcccC-------CCCCEEEeeHHHHhhchh----hhccccCEEEEEchhcccchh----HHHHHHhhhc
Confidence 22 2333344443321 347899999999876432 136789999999999997644 3455544432
Q ss_pred cCCCceEEEEEeecCC
Q psy15524 164 QKPQFQSILLSATLTP 179 (930)
Q Consensus 164 ~~~~~~~i~lSAT~~~ 179 (930)
..+++|||||+.+
T Consensus 249 ---~~~~lGLTATp~~ 261 (501)
T PHA02558 249 ---CKFKFGLTGSLRD 261 (501)
T ss_pred ---cceEEEEeccCCC
Confidence 3479999999964
|
|
| >TIGR01587 cas3_core CRISPR-associated helicase Cas3 | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.3e-18 Score=190.80 Aligned_cols=143 Identities=22% Similarity=0.196 Sum_probs=96.4
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHHhhhcCCceeEEeeCCCch---
Q psy15524 22 DVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKM--- 98 (930)
Q Consensus 22 ~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~--- 98 (930)
+++++||||||||++|++|++..+.. ..+.+++|++|+++|+.|+++++..++.. ....+.++...
T Consensus 1 ~vvi~apTGsGKT~~~~~~~l~~~~~-------~~~~~ii~v~P~~~L~~q~~~~l~~~f~~----~~~~~~~~~~~~~~ 69 (358)
T TIGR01587 1 LLVIEAPTGYGKTEAALLWALHSIKS-------QKADRVIIALPTRATINAMYRRAKELFGS----NLGLLHSSSSFKRI 69 (358)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHhh-------CCCCeEEEEeehHHHHHHHHHHHHHHhCc----ccEEeeccHHHHHH
Confidence 58999999999999999999987643 23457999999999999999999998642 12222222110
Q ss_pred ---------HHHHHHh-c-----CCCcEEEEChHHHHHHHhcC-C--CccCC--CccEEEEcccccccccCcHHHHHHHH
Q psy15524 99 ---------KSEKARI-R-----KGISILVATPGRLLDHCKHT-E--TLKFS--KVEHLVLDEADRILDQGYERDIAEFL 158 (930)
Q Consensus 99 ---------~~~~~~l-~-----~~~~Ilv~Tp~~l~~~l~~~-~--~~~l~--~l~~vViDE~h~~~~~~~~~~~~~i~ 158 (930)
....... . ...+|+++||++++..+... . ...+. ..++|||||+|.+.+++++. +..++
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~-l~~~l 148 (358)
T TIGR01587 70 KEMGDSEEFEHLFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEYTLAL-ILAVL 148 (358)
T ss_pred hccCCchhHHHHHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHHHHHH-HHHHH
Confidence 0111111 1 13679999999998876641 1 11111 23799999999999876554 55555
Q ss_pred HHHhhcCCCceEEEEEeecC
Q psy15524 159 EILKKQKPQFQSILLSATLT 178 (930)
Q Consensus 159 ~~l~~~~~~~~~i~lSAT~~ 178 (930)
..++ ..++|++++|||++
T Consensus 149 ~~l~--~~~~~~i~~SATlp 166 (358)
T TIGR01587 149 EVLK--DNDVPILLMSATLP 166 (358)
T ss_pred HHHH--HcCCCEEEEecCch
Confidence 5554 23456777777764
|
This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model. |
| >PRK05298 excinuclease ABC subunit B; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.5e-16 Score=185.81 Aligned_cols=124 Identities=27% Similarity=0.360 Sum_probs=109.6
Q ss_pred hhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHHHHHHHHHHhhcCCCcEE
Q psy15524 635 KLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSVKSGVL 714 (930)
Q Consensus 635 ~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~v~~~F~~~~~~vL 714 (930)
..++..+...+..... .+.++||||+|.+.++.+++.|... |+.+..+||++++.+|..+++.|+.|...||
T Consensus 429 ~~q~~~L~~~L~~~~~-----~g~~viIf~~t~~~ae~L~~~L~~~---gi~~~~~h~~~~~~~R~~~l~~f~~g~i~vl 500 (652)
T PRK05298 429 KGQVDDLLSEIRKRVA-----KGERVLVTTLTKRMAEDLTDYLKEL---GIKVRYLHSDIDTLERVEIIRDLRLGEFDVL 500 (652)
T ss_pred cccHHHHHHHHHHHHh-----CCCEEEEEeCCHHHHHHHHHHHhhc---ceeEEEEECCCCHHHHHHHHHHHHcCCceEE
Confidence 3456666666665432 2679999999999999999999875 8889999999999999999999999999999
Q ss_pred EeccccccccCCCCccEEEEecC-----CCChhhHHhhhcccccCCCCceEEEEeCcc
Q psy15524 715 ICTDVAARGLDLPLVDWIVQYTA-----PSSSTDYVHRVGRTARVGHEGSSLLFLIPS 767 (930)
Q Consensus 715 v~T~~~~~GlDip~v~~VI~~~~-----p~s~~~y~qr~GRagR~g~~g~~~~~~~~~ 767 (930)
|||+++++|+|+|++++||++|. |.+...|+||+|||||. ..|.+++|+...
T Consensus 501 V~t~~L~rGfdlp~v~lVii~d~eifG~~~~~~~yiqr~GR~gR~-~~G~~i~~~~~~ 557 (652)
T PRK05298 501 VGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVILYADKI 557 (652)
T ss_pred EEeCHHhCCccccCCcEEEEeCCcccccCCCHHHHHHHhccccCC-CCCEEEEEecCC
Confidence 99999999999999999999885 78999999999999996 789999999853
|
|
| >smart00487 DEXDc DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Probab=99.76 E-value=4.7e-17 Score=165.56 Aligned_cols=187 Identities=35% Similarity=0.561 Sum_probs=149.3
Q ss_pred cCCCCCCCHHHHHhHHhhhcC-CcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHHH
Q psy15524 409 GMNITQVTTVQQLSIQPILDG-GDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFT 487 (930)
Q Consensus 409 ~~~~~~~~~iQ~~~i~~il~~-~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~ 487 (930)
.+++..++++|.++++.++.+ +.+++.++||+|||.++..++++.+.. ....+++|++|+++++.|+.+.+.
T Consensus 3 ~~~~~~~~~~Q~~~~~~~~~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~-------~~~~~~l~~~p~~~~~~~~~~~~~ 75 (201)
T smart00487 3 KFGFEPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALKR-------GKGKRVLVLVPTRELAEQWAEELK 75 (201)
T ss_pred ccCCCCCCHHHHHHHHHHHcCCCcEEEECCCCCchhHHHHHHHHHHhcc-------cCCCcEEEEeCCHHHHHHHHHHHH
Confidence 357889999999999999998 999999999999999999999988764 224679999999999999999998
Q ss_pred HhhccCCCcceEEEeCCCchHHHHHHHhcCC-cEEEECchhHHHhhhccCCcccccceEEEEecchhhhhcCcHHHHHHH
Q psy15524 488 KLCKSFTWIVPSWLTGGEKMKSEKARIRKGI-SILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEF 566 (930)
Q Consensus 488 ~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~-~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~l~~~g~~~~l~~i 566 (930)
..+..... ......++............+. +++++|++.+.+.+.... .....++++|+||+|.+....+...+..+
T Consensus 76 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~t~~~l~~~~~~~~-~~~~~~~~iIiDE~h~~~~~~~~~~~~~~ 153 (201)
T smart00487 76 KLGPSLGL-KVVGLYGGDSKREQLRKLESGKTDILVTTPGRLLDLLENDL-LELSNVDLVILDEAHRLLDGGFGDQLEKL 153 (201)
T ss_pred HHhccCCe-EEEEEeCCcchHHHHHHHhcCCCCEEEeChHHHHHHHHcCC-cCHhHCCEEEEECHHHHhcCCcHHHHHHH
Confidence 88754321 2334455555455555555565 999999999998887633 45678999999999999875677777777
Q ss_pred HHHHhhcCccceEEEEccccCHHHHHHHhhhcCCCEEEEcc
Q psy15524 567 LEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAA 607 (930)
Q Consensus 567 ~~~l~~~~~~~q~vl~SAT~~~~~~~l~~~~~~~~~~i~~~ 607 (930)
+..+ .+..+++++|||+++.........+.+...+...
T Consensus 154 ~~~~---~~~~~~v~~saT~~~~~~~~~~~~~~~~~~~~~~ 191 (201)
T smart00487 154 LKLL---PKNVQLLLLSATPPEEIENLLELFLNDPVFIDVG 191 (201)
T ss_pred HHhC---CccceEEEEecCCchhHHHHHHHhcCCCEEEeCC
Confidence 7666 3478899999999998888888888777766654
|
|
| >COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.76 E-value=4.4e-18 Score=199.86 Aligned_cols=166 Identities=22% Similarity=0.241 Sum_probs=139.8
Q ss_pred CCccCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHHh
Q psy15524 2 NITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLC 81 (930)
Q Consensus 2 g~~~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~ 81 (930)
|| +|-++|++|+-.+..|.+++|+||||+|||++...++...+.. +.+++|.+|.+||.+|.++.+...+
T Consensus 117 ~F-~LD~fQ~~a~~~Ler~esVlV~ApTssGKTvVaeyAi~~al~~---------~qrviYTsPIKALsNQKyrdl~~~f 186 (1041)
T COG4581 117 PF-ELDPFQQEAIAILERGESVLVCAPTSSGKTVVAEYAIALALRD---------GQRVIYTSPIKALSNQKYRDLLAKF 186 (1041)
T ss_pred CC-CcCHHHHHHHHHHhCCCcEEEEccCCCCcchHHHHHHHHHHHc---------CCceEeccchhhhhhhHHHHHHHHh
Confidence 56 5899999999999999999999999999999988888777654 4559999999999999999998887
Q ss_pred hhcCCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCcHHHHHHHHHHH
Q psy15524 82 KSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEIL 161 (930)
Q Consensus 82 ~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~~~~~~~i~~~l 161 (930)
... .-.+++++|+.... .++.++|.|.|.|.+++.+ +...+..+.+||+||+|.|.|..++..++.++-.+
T Consensus 187 gdv-~~~vGL~TGDv~IN-------~~A~clvMTTEILRnMlyr-g~~~~~~i~~ViFDEvHyi~D~eRG~VWEE~Ii~l 257 (1041)
T COG4581 187 GDV-ADMVGLMTGDVSIN-------PDAPCLVMTTEILRNMLYR-GSESLRDIEWVVFDEVHYIGDRERGVVWEEVIILL 257 (1041)
T ss_pred hhh-hhhccceecceeeC-------CCCceEEeeHHHHHHHhcc-CcccccccceEEEEeeeeccccccchhHHHHHHhc
Confidence 643 24467777776543 4578999999999999987 56678999999999999999999999998888777
Q ss_pred hhcCCCceEEEEEeecCCCccccccccc
Q psy15524 162 KKQKPQFQSILLSATLTPATCWCKHTET 189 (930)
Q Consensus 162 ~~~~~~~~~i~lSAT~~~~~~~~~~~~~ 189 (930)
+. ++++++||||.++...+..|...
T Consensus 258 P~---~v~~v~LSATv~N~~EF~~Wi~~ 282 (1041)
T COG4581 258 PD---HVRFVFLSATVPNAEEFAEWIQR 282 (1041)
T ss_pred CC---CCcEEEEeCCCCCHHHHHHHHHh
Confidence 54 45899999999998766655443
|
|
| >KOG0353|consensus | Back alignment and domain information |
|---|
Probab=99.76 E-value=1e-17 Score=169.84 Aligned_cols=160 Identities=23% Similarity=0.336 Sum_probs=121.5
Q ss_pred CCccCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHHh
Q psy15524 2 NITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLC 81 (930)
Q Consensus 2 g~~~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~ 81 (930)
..+.++|.|..+|.+.++|++++++.|||.||++||.+|++-. .+.+||++|.+.|+.++.-.++.++
T Consensus 91 ~lekfrplq~~ain~~ma~ed~~lil~tgggkslcyqlpal~a------------dg~alvi~plislmedqil~lkqlg 158 (695)
T KOG0353|consen 91 HLEKFRPLQLAAINATMAGEDAFLILPTGGGKSLCYQLPALCA------------DGFALVICPLISLMEDQILQLKQLG 158 (695)
T ss_pred hHHhcChhHHHHhhhhhccCceEEEEeCCCccchhhhhhHHhc------------CCceEeechhHHHHHHHHHHHHHhC
Confidence 3567899999999999999999999999999999999999732 3449999999999999999999887
Q ss_pred hhcCCceeEEeeCCCchHHH---HHHhc---CCCcEEEEChHHHHHH---Hhc-CCCccCCCccEEEEcccccccccC--
Q psy15524 82 KSFTWIVPSWLTGGEKMKSE---KARIR---KGISILVATPGRLLDH---CKH-TETLKFSKVEHLVLDEADRILDQG-- 149 (930)
Q Consensus 82 ~~~~~~~~~~~~g~~~~~~~---~~~l~---~~~~Ilv~Tp~~l~~~---l~~-~~~~~l~~l~~vViDE~h~~~~~~-- 149 (930)
... ..+....+.++. ...+. ....+++.|||.+... +.. ...+....+.++-|||+||-.+||
T Consensus 159 i~a-----s~lnansske~~k~v~~~i~nkdse~kliyvtpekiaksk~~mnkleka~~~~~~~~iaidevhccsqwghd 233 (695)
T KOG0353|consen 159 IDA-----SMLNANSSKEEAKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKLEKALEAGFFKLIAIDEVHCCSQWGHD 233 (695)
T ss_pred cch-----hhccCcccHHHHHHHHHHHcCCCceeEEEEecHHHHHHHHHHHHHHHHHhhcceeEEEeecceeehhhhCcc
Confidence 432 223333322221 11222 2368999999998532 111 133446788999999999999998
Q ss_pred cHHHHHHHHHHHhhcCCCceEEEEEeecCC
Q psy15524 150 YERDIAEFLEILKKQKPQFQSILLSATLTP 179 (930)
Q Consensus 150 ~~~~~~~i~~~l~~~~~~~~~i~lSAT~~~ 179 (930)
|++++.. +..|+..-+.+.+||||||..+
T Consensus 234 fr~dy~~-l~ilkrqf~~~~iigltatatn 262 (695)
T KOG0353|consen 234 FRPDYKA-LGILKRQFKGAPIIGLTATATN 262 (695)
T ss_pred cCcchHH-HHHHHHhCCCCceeeeehhhhc
Confidence 8888654 4566667778899999999875
|
|
| >PRK12898 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.75 E-value=4.3e-17 Score=186.24 Aligned_cols=301 Identities=19% Similarity=0.208 Sum_probs=189.5
Q ss_pred CCccCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHHh
Q psy15524 2 NITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLC 81 (930)
Q Consensus 2 g~~~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~ 81 (930)
|. .|+|+|..+++.++.|+ |+.+.||+|||++|.+|++..... |.+++|++||++||.|.++.+..++
T Consensus 101 g~-~p~~VQ~~~~~~ll~G~--Iae~~TGeGKTla~~lp~~~~al~---------G~~v~VvTptreLA~qdae~~~~l~ 168 (656)
T PRK12898 101 GQ-RHFDVQLMGGLALLSGR--LAEMQTGEGKTLTATLPAGTAALA---------GLPVHVITVNDYLAERDAELMRPLY 168 (656)
T ss_pred CC-CCChHHHHHHHHHhCCC--eeeeeCCCCcHHHHHHHHHHHhhc---------CCeEEEEcCcHHHHHHHHHHHHHHH
Confidence 55 58999999999999998 999999999999999999987643 6679999999999999999999999
Q ss_pred hhcCCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHH-HHHHhcC------------------------CCccCCCccE
Q psy15524 82 KSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRL-LDHCKHT------------------------ETLKFSKVEH 136 (930)
Q Consensus 82 ~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l-~~~l~~~------------------------~~~~l~~l~~ 136 (930)
..++ +.+.+++|+.+.. ......++||+|||...+ .+.++.. .....+.+.+
T Consensus 169 ~~lG-lsv~~i~gg~~~~--~r~~~y~~dIvygT~~e~~FDyLrd~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~~~~ 245 (656)
T PRK12898 169 EALG-LTVGCVVEDQSPD--ERRAAYGADITYCTNKELVFDYLRDRLALGQRASDARLALESLHGRSSRSTQLLLRGLHF 245 (656)
T ss_pred hhcC-CEEEEEeCCCCHH--HHHHHcCCCEEEECCCchhhhhccccccccccccchhhhhhhhccccCchhhhcccccce
Confidence 8776 7888899887543 344456799999999887 3444321 0112467899
Q ss_pred EEEccccccc-ccCcH-----------------HHHHHHHHHHhhcC-----CCceEEEEEeecCC---------Ccccc
Q psy15524 137 LVLDEADRIL-DQGYE-----------------RDIAEFLEILKKQK-----PQFQSILLSATLTP---------ATCWC 184 (930)
Q Consensus 137 vViDE~h~~~-~~~~~-----------------~~~~~i~~~l~~~~-----~~~~~i~lSAT~~~---------~~~~~ 184 (930)
.||||+|.++ |...- .....+...+.... +.-+.+.+|..-.. ...|.
T Consensus 246 aIvDEvDSiLiDeartpliis~~~~~~~~~~~y~~~~~~~~~l~~~~~y~~d~~~~~v~lt~~g~~~~e~~~~~l~~~~~ 325 (656)
T PRK12898 246 AIVDEADSVLIDEARTPLIISAPAKEADEAEVYRQALELAAQLKEGEDYTIDAAEKRIELTEAGRARIAELAESLPPAWR 325 (656)
T ss_pred eEeecccceeeccCCCceEEECCCCCCchhHHHHHHHHHHHhcCCCCceEEECCCCeEEEcHHHHHHHHHHhCcchhhcc
Confidence 9999999764 43211 11222233332210 12344545422110 01111
Q ss_pred ccc------------cccccccccchhhhhhhhhh---------hccchhhHHHHHHHHhhc---Cc-------------
Q psy15524 185 KHT------------ETLKFSKVEHLVLDEADRIL---------DQGYERDIAEFLEILKKQ---KP------------- 227 (930)
Q Consensus 185 ~~~------------~~~~~~~~~~~~~de~~~~~---------~~~~~~~~~~~~~~~~~~---~~------------- 227 (930)
... ..+...++.++|.|+.-.++ +..+...+...++.-... +.
T Consensus 326 ~~~~~~~~i~~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~w~~GLhQaieaKE~v~i~~e~~t~a~It~q~~F 405 (656)
T PRK12898 326 GAVRREELVRQALSALHLFRRDEHYIVRDGKVVIVDEFTGRVMPDRSWEDGLHQMIEAKEGCELTDPRETLARITYQRFF 405 (656)
T ss_pred cchHHHHHHHHHHHHHHHHhcCCceEEECCeEEEEECCCCeECCCCCcChHHHHHHHHhcCCCCCcCceeeeeehHHHHH
Confidence 000 00111122233322211111 112222233222221110 00
Q ss_pred --CceEEEEecccchHHHHhhhccccCCeeeccCCcccccCCCcccccCCCceeEEEEcCcchhHHHHHHHHhhhccccc
Q psy15524 228 --QFQSVLLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALASFILGKCQNVN 305 (930)
Q Consensus 228 --~~q~~~~sat~~~~~~~l~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~~ 305 (930)
.....-||+|.......+...|.-+++.|...... .....+.++.++..+|..+|...+.. .
T Consensus 406 r~Y~kl~GmTGTa~~~~~El~~~y~l~vv~IPt~kp~-----------~r~~~~~~v~~t~~~K~~aL~~~i~~-----~ 469 (656)
T PRK12898 406 RRYLRLAGMTGTAREVAGELWSVYGLPVVRIPTNRPS-----------QRRHLPDEVFLTAAAKWAAVAARVRE-----L 469 (656)
T ss_pred HhhHHHhcccCcChHHHHHHHHHHCCCeEEeCCCCCc-----------cceecCCEEEeCHHHHHHHHHHHHHH-----H
Confidence 01455678899888888888887787777554433 12234445667778899999998854 1
Q ss_pred cCCcceEEEEEecccchhhhHHHHhhhh
Q psy15524 306 EDEESKMLVFMATQDMADYHTELLSTKK 333 (930)
Q Consensus 306 ~~~~~~~iVF~~s~~~~~~l~~~L~~~~ 333 (930)
...+.++||||+|++.++.++..|...|
T Consensus 470 ~~~~~pvLIft~t~~~se~L~~~L~~~g 497 (656)
T PRK12898 470 HAQGRPVLVGTRSVAASERLSALLREAG 497 (656)
T ss_pred HhcCCCEEEEeCcHHHHHHHHHHHHHCC
Confidence 2345789999999999999999998765
|
|
| >PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated | Back alignment and domain information |
|---|
Probab=99.75 E-value=9.4e-16 Score=184.63 Aligned_cols=143 Identities=16% Similarity=0.139 Sum_probs=92.4
Q ss_pred HHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHHHHHHHHHHhhcCCCcEEEec
Q psy15524 638 LVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSVKSGVLICT 717 (930)
Q Consensus 638 ~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~v~~~F~~~~~~vLv~T 717 (930)
...+...+..... .+++++|+++|.+..+.+++.|... ...+ ...|... .|..+.++|++++..||++|
T Consensus 633 ~~~~~~~i~~~~~-----~~g~~LVLFtS~~~l~~v~~~l~~~---~~~~-l~Qg~~~--~~~~l~~~F~~~~~~vLlG~ 701 (820)
T PRK07246 633 AEEIAKRLEELKQ-----LQQPILVLFNSKKHLLAVSDLLDQW---QVSH-LAQEKNG--TAYNIKKRFDRGEQQILLGL 701 (820)
T ss_pred HHHHHHHHHHHHh-----cCCCEEEEECcHHHHHHHHHHHhhc---CCcE-EEeCCCc--cHHHHHHHHHcCCCeEEEec
Confidence 3455555544331 2689999999999999999888753 2334 3344221 25668999999888999999
Q ss_pred cccccccCCCC--ccEEEEecCCC----C--------------------------hhhHHhhhcccccCCCCceEEEEeC
Q psy15524 718 DVAARGLDLPL--VDWIVQYTAPS----S--------------------------STDYVHRVGRTARVGHEGSSLLFLI 765 (930)
Q Consensus 718 ~~~~~GlDip~--v~~VI~~~~p~----s--------------------------~~~y~qr~GRagR~g~~g~~~~~~~ 765 (930)
+.+.+|+|+|+ ...||....|. + ...+.|-+||.-|...+-..++++.
T Consensus 702 ~sFwEGVD~p~~~~~~viI~kLPF~~P~dP~~~a~~~~~~~~g~~~F~~~~lP~A~iklkQg~GRLIRs~~D~Gvv~ilD 781 (820)
T PRK07246 702 GSFWEGVDFVQADRMIEVITRLPFDNPEDPFVKKMNQYLLQEGKNPFYDYFLPMTILRLKQAIGRTMRREDQKSAVLILD 781 (820)
T ss_pred chhhCCCCCCCCCeEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhheeHHHHHHHHHHHhcccccCCCCcEEEEEEC
Confidence 99999999974 44555555442 2 2246799999999876544555555
Q ss_pred cc--cHHHHHHHHhc---CCccchhchHHHH
Q psy15524 766 PS--EVKLVEELQNR---RIRIEEIKLKDCL 791 (930)
Q Consensus 766 ~~--e~~~~~~l~~~---~~~~~~~~~~~~~ 791 (930)
++ ...|-+.+.+. ++++.+..++++.
T Consensus 782 ~R~~~k~Yg~~~l~sLP~~~~~~~~~~~~~~ 812 (820)
T PRK07246 782 RRILTKSYGKQILASLAEEFLISQQNFSDVL 812 (820)
T ss_pred CcccccHHHHHHHHhCCCCCccccCCHHHHH
Confidence 54 22344444332 2344445544443
|
|
| >TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB | Back alignment and domain information |
|---|
Probab=99.75 E-value=6.9e-17 Score=192.55 Aligned_cols=149 Identities=17% Similarity=0.229 Sum_probs=103.4
Q ss_pred HHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHHhhhcCCcee
Q psy15524 10 QQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVP 89 (930)
Q Consensus 10 Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~ 89 (930)
-.+.+..+.++.+++++|+||||||.+|.+++++... .+.+++|+.|++++|.|+++++.+.........+
T Consensus 7 ~~~i~~~l~~~~~vIi~a~TGSGKTT~vpl~lL~~~~---------~~~~ilvlqPrR~aA~qiA~rva~~~~~~~g~~V 77 (819)
T TIGR01970 7 LPALRDALAAHPQVVLEAPPGAGKSTAVPLALLDAPG---------IGGKIIMLEPRRLAARSAAQRLASQLGEAVGQTV 77 (819)
T ss_pred HHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHHhhc---------cCCeEEEEeCcHHHHHHHHHHHHHHhCCCcCcEE
Confidence 3455666778889999999999999999999997752 2457999999999999999998654432222344
Q ss_pred EEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccc-cccccCcHHHH-HHHHHHHhhcCCC
Q psy15524 90 SWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEAD-RILDQGYERDI-AEFLEILKKQKPQ 167 (930)
Q Consensus 90 ~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h-~~~~~~~~~~~-~~i~~~l~~~~~~ 167 (930)
+...++.. ....+.+|+|+||++|++.+.+ ...++++++|||||+| ++++..+.-.+ ..+.. ..+++
T Consensus 78 Gy~vr~~~------~~s~~t~I~v~T~G~Llr~l~~--d~~L~~v~~VIiDEaHER~L~~Dl~L~ll~~i~~---~lr~d 146 (819)
T TIGR01970 78 GYRVRGEN------KVSRRTRLEVVTEGILTRMIQD--DPELDGVGALIFDEFHERSLDADLGLALALDVQS---SLRED 146 (819)
T ss_pred EEEEcccc------ccCCCCcEEEECCcHHHHHHhh--CcccccCCEEEEeccchhhhccchHHHHHHHHHH---hcCCC
Confidence 44444332 2234578999999999998875 3468999999999999 46665543222 11211 12334
Q ss_pred ceEEEEEeecC
Q psy15524 168 FQSILLSATLT 178 (930)
Q Consensus 168 ~~~i~lSAT~~ 178 (930)
.|+++||||++
T Consensus 147 lqlIlmSATl~ 157 (819)
T TIGR01970 147 LKILAMSATLD 157 (819)
T ss_pred ceEEEEeCCCC
Confidence 45555555553
|
This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing. |
| >PRK11664 ATP-dependent RNA helicase HrpB; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=5.8e-17 Score=193.72 Aligned_cols=118 Identities=17% Similarity=0.151 Sum_probs=90.2
Q ss_pred HHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHHhhhcCCcee
Q psy15524 10 QQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVP 89 (930)
Q Consensus 10 Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~ 89 (930)
=.+.+.++.++++++++||||||||.+|.+++++... ..++++|+.|++++|.|+++++.+.........+
T Consensus 10 ~~~i~~~l~~~~~vvv~A~TGSGKTt~~pl~lL~~~~---------~~~~ilvlqPrR~aA~qia~rva~~l~~~~g~~V 80 (812)
T PRK11664 10 LPELLTALKTAPQVLLKAPTGAGKSTWLPLQLLQHGG---------INGKIIMLEPRRLAARNVAQRLAEQLGEKPGETV 80 (812)
T ss_pred HHHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHHHcCC---------cCCeEEEECChHHHHHHHHHHHHHHhCcccCceE
Confidence 3455666778899999999999999999999986531 1347999999999999999998655433222455
Q ss_pred EEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEccccc
Q psy15524 90 SWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADR 144 (930)
Q Consensus 90 ~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~ 144 (930)
+...++.... ....+|+|+||++|++++.. ...++++++|||||+|.
T Consensus 81 Gy~vr~~~~~------~~~t~I~v~T~G~Llr~l~~--d~~L~~v~~IIlDEaHE 127 (812)
T PRK11664 81 GYRMRAESKV------GPNTRLEVVTEGILTRMIQR--DPELSGVGLVILDEFHE 127 (812)
T ss_pred EEEecCcccc------CCCCcEEEEChhHHHHHHhh--CCCcCcCcEEEEcCCCc
Confidence 5555554321 23468999999999998874 34689999999999996
|
|
| >KOG4150|consensus | Back alignment and domain information |
|---|
Probab=99.74 E-value=5.6e-17 Score=172.42 Aligned_cols=348 Identities=11% Similarity=0.060 Sum_probs=233.8
Q ss_pred HHHHHHHhcCCCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHH
Q psy15524 401 FMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELAL 480 (930)
Q Consensus 401 ~~~~~l~~~~~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~ 480 (930)
++...+.+.+.-+....+|..+|..+-+|+++++.-.|.+||.++|.+.....+.. ......+++.||.++++
T Consensus 273 E~~~~~~~~~~~E~~~~~~~~~~~~~~~G~~~~~~~~~~~GK~~~~~~~s~~~~~~-------~~~s~~~~~~~~~~~~~ 345 (1034)
T KOG4150|consen 273 ESIRSLLNKNTGESGIAISLELLKFASEGRADGGNEARQAGKGTCPTSGSRKFQTL-------CHATNSLLPSEMVEHLR 345 (1034)
T ss_pred HHHHHHHhcccccchhhhhHHHHhhhhhcccccccchhhcCCccCcccchhhhhhc-------CcccceecchhHHHHhh
Confidence 33444445677778899999999999999999999999999999999988876654 34556899999999998
Q ss_pred HHHHHHHHhhccCCCcce--EEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhh-ccCCc--ccccceEEEEecchhhh
Q psy15524 481 QTLEIFTKLCKSFTWIVP--SWLTGGEKMKSEKARIRKGISILVATPGRLLDHCK-HTETL--KFSKVEHLVLDEADRIL 555 (930)
Q Consensus 481 Q~~~~~~~~~~~~~~~~~--~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~-~~~~~--~~~~l~~lVlDEah~l~ 555 (930)
...+.+.-.....+.... .-.+.|.....+.+-.+.+.+++++.|........ +...+ .+=...+++.||+|.++
T Consensus 346 ~~~~~~~V~~~~I~~~K~A~V~~~D~~sE~~~~A~~R~~~~~~~s~~~~~~s~~L~~~~~~~~~~~~~~~~~~~~~~~Y~ 425 (1034)
T KOG4150|consen 346 NGSKGQVVHVEVIKARKSAYVEMSDKLSETTKSALKRIGLNTLYSHQAEAISAALAKSLCYNVPVFEELCKDTNSCALYL 425 (1034)
T ss_pred ccCCceEEEEEehhhhhcceeecccCCCchhHHHHHhcCcceeecCHHHHHHHHhhhccccccHHHHHHHhcccceeeee
Confidence 765543322222221111 22344555555666678899999999987644322 21111 13345678999999765
Q ss_pred hcCcHHHHHHHHHHHhh------cCccceEEEEccccCHHHHHHHhhhcCCCEEEEccCCCCcccCccceecCCCceEEE
Q psy15524 556 DQGYERDIAEFLEILKK------QKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHF 629 (930)
Q Consensus 556 ~~g~~~~l~~i~~~l~~------~~~~~q~vl~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 629 (930)
.. |.......++.|.. ...+.|++-.|||+.+.++-......-+.+.+...+.+ |..-+..+
T Consensus 426 ~~-~~~~~~~~~R~L~~L~~~F~~~~~~~~~~~~~~~K~~~~~~~~~~~~~E~~Li~~DGS-----------Ps~~K~~V 493 (1034)
T KOG4150|consen 426 FP-TKALAQDQLRALSDLIKGFEASINMGVYDGDTPYKDRTRLRSELANLSELELVTIDGS-----------PSSEKLFV 493 (1034)
T ss_pred cc-hhhHHHHHHHHHHHHHHHHHhhcCcceEeCCCCcCCHHHHHHHhcCCcceEEEEecCC-----------CCccceEE
Confidence 32 34333333333322 23477899999999887766555444444332222111 12222222
Q ss_pred EEcCc---------hhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCC---C--ceEEEecCCCC
Q psy15524 630 IVTPP---------KLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGE---N--IAFFKLHGSMS 695 (930)
Q Consensus 630 ~~~~~---------~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~---~--~~~~~lhg~~~ 695 (930)
+..|+ ..+......++.+.... +-++|.||.+++.|+.+-....+.+.+ . -.+..+.|+-+
T Consensus 494 ~WNP~~~P~~~~~~~~~i~E~s~~~~~~i~~-----~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~ 568 (1034)
T KOG4150|consen 494 LWNPSAPPTSKSEKSSKVVEVSHLFAEMVQH-----GLRCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRGGYI 568 (1034)
T ss_pred EeCCCCCCcchhhhhhHHHHHHHHHHHHHHc-----CCcEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCccc
Confidence 22221 11222222222222211 679999999999998776555544322 1 13556789999
Q ss_pred HHHHHHHHHHhhcCCCcEEEeccccccccCCCCccEEEEecCCCChhhHHhhhcccccCCCCceEEEEeC--cccHHHH
Q psy15524 696 QSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLI--PSEVKLV 772 (930)
Q Consensus 696 ~~~R~~v~~~F~~~~~~vLv~T~~~~~GlDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~g~~~~~~~--~~e~~~~ 772 (930)
.++|+.++...-.|+..-+++|++++-|+|+.+.+.|++.+.|.|...+.|..|||||.+++..++.+.. |-+..|+
T Consensus 569 A~DRRKIE~~~F~G~L~giIaTNALELGIDIG~LDAVl~~GFP~S~aNl~QQ~GRAGRRNk~SLavyva~~~PVDQ~Y~ 647 (1034)
T KOG4150|consen 569 AEDRRKIESDLFGGKLCGIIATNALELGIDIGHLDAVLHLGFPGSIANLWQQAGRAGRRNKPSLAVYVAFLGPVDQYYM 647 (1034)
T ss_pred hhhHHHHHHHhhCCeeeEEEecchhhhccccccceeEEEccCchhHHHHHHHhccccccCCCceEEEEEeccchhhHhh
Confidence 9999999999999999999999999999999999999999999999999999999999999887766554 4455444
|
|
| >KOG1123|consensus | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.5e-17 Score=173.02 Aligned_cols=332 Identities=18% Similarity=0.214 Sum_probs=209.4
Q ss_pred CCccccCCCCCCCCCCCCCHHHHHHHHhcCCCCCCCHHHHHhHHhhhcC---CcEEEEccCCCchhHHhhHHHHHHHHhh
Q psy15524 381 PVSEALFAPTSYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDG---GDVLVRSQTGSGKTLAYAIPIIQKLQEM 457 (930)
Q Consensus 381 ~~~~~~~~~~~f~~l~~l~~~~~~~l~~~~~~~~~~~iQ~~~i~~il~~---~d~lv~a~TGsGKTl~~~lp~l~~l~~~ 457 (930)
+.+-|++++-.|..- .++|++--.|+ .-..++|+|++++..+..+ +.-++..|.|+|||++.+-++..
T Consensus 273 eidyPlLeEYDFRND-~~npdl~idLK---Pst~iRpYQEksL~KMFGNgRARSGiIVLPCGAGKtLVGvTAa~t----- 343 (776)
T KOG1123|consen 273 EIDYPLLEEYDFRND-NVNPDLDIDLK---PSTQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVGVTAACT----- 343 (776)
T ss_pred ccCchhhhhhccccC-CCCCCCCcCcC---cccccCchHHHHHHHHhCCCcccCceEEEecCCCCceeeeeeeee-----
Confidence 344456666666654 44444332332 4467999999999998853 56899999999999986555441
Q ss_pred CcccCCCCCeeEEEEccCHHHHHHHHHHHHHhhccCCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhcc--
Q psy15524 458 RPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHT-- 535 (930)
Q Consensus 458 ~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~-- 535 (930)
-.+++||++.+---+.||...|..+..--+ ...+.++.+.+ .+...++.|+|+|...+..--.+.
T Consensus 344 -------ikK~clvLcts~VSVeQWkqQfk~wsti~d-~~i~rFTsd~K-----e~~~~~~gvvvsTYsMva~t~kRS~e 410 (776)
T KOG1123|consen 344 -------IKKSCLVLCTSAVSVEQWKQQFKQWSTIQD-DQICRFTSDAK-----ERFPSGAGVVVTTYSMVAYTGKRSHE 410 (776)
T ss_pred -------ecccEEEEecCccCHHHHHHHHHhhcccCc-cceEEeecccc-----ccCCCCCcEEEEeeehhhhcccccHH
Confidence 245699999999999999999887764322 22333443322 233467899999986552211110
Q ss_pred -----CCcccccceEEEEecchhhhhcCcHHHHHHHHHHHhhcCccceEEEEccccCHHHHHHHhh-hcCCCEEEEcc--
Q psy15524 536 -----ETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGM-TLQNPIQIDAA-- 607 (930)
Q Consensus 536 -----~~~~~~~l~~lVlDEah~l~~~g~~~~l~~i~~~l~~~~~~~q~vl~SAT~~~~~~~l~~~-~~~~~~~i~~~-- 607 (930)
..+.-+.+.++|+||+|.+...-|.+.+.-+-.+.+ ++++||+-.+-..+... ++-.|......
T Consensus 411 aek~m~~l~~~EWGllllDEVHvvPA~MFRRVlsiv~aHcK--------LGLTATLvREDdKI~DLNFLIGPKlYEAnWm 482 (776)
T KOG1123|consen 411 AEKIMDFLRGREWGLLLLDEVHVVPAKMFRRVLSIVQAHCK--------LGLTATLVREDDKITDLNFLIGPKLYEANWM 482 (776)
T ss_pred HHHHHHHHhcCeeeeEEeehhccchHHHHHHHHHHHHHHhh--------ccceeEEeeccccccccceeecchhhhccHH
Confidence 011235688999999999988878777766655543 78999975321111110 01111111000
Q ss_pred ---CCC--------------CcccCccceecCCCceEEEEEcCchhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhH
Q psy15524 608 ---DST--------------DIHNTTDSLVIPDSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMA 670 (930)
Q Consensus 608 ---~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~ 670 (930)
... ......+.+.. ..-+.....+-...|+.+..-+++.+-. .+.|+|||..+.-..
T Consensus 483 dL~~kGhIA~VqCaEVWCpMt~eFy~eYL~~-~t~kr~lLyvMNP~KFraCqfLI~~HE~-----RgDKiIVFsDnvfAL 556 (776)
T KOG1123|consen 483 DLQKKGHIAKVQCAEVWCPMTPEFYREYLRE-NTRKRMLLYVMNPNKFRACQFLIKFHER-----RGDKIIVFSDNVFAL 556 (776)
T ss_pred HHHhCCceeEEeeeeeecCCCHHHHHHHHhh-hhhhhheeeecCcchhHHHHHHHHHHHh-----cCCeEEEEeccHHHH
Confidence 000 00000000000 1111122233344555555444443322 378999999888777
Q ss_pred HHHHHHHhhhcCCCceEEEecCCCCHHHHHHHHHHhhc-CCCcEEEeccccccccCCCCccEEEEecCC-CChhhHHhhh
Q psy15524 671 DYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRS-VKSGVLICTDVAARGLDLPLVDWIVQYTAP-SSSTDYVHRV 748 (930)
Q Consensus 671 ~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~v~~~F~~-~~~~vLv~T~~~~~GlDip~v~~VI~~~~p-~s~~~y~qr~ 748 (930)
..++-.|.+ ++ +.|..+|.+|..+++.|+- ..++-++-+.+....+|+|..+++||.... .|..+--||.
T Consensus 557 k~YAikl~K------pf--IYG~Tsq~ERm~ILqnFq~n~~vNTIFlSKVgDtSiDLPEAnvLIQISSH~GSRRQEAQRL 628 (776)
T KOG1123|consen 557 KEYAIKLGK------PF--IYGPTSQNERMKILQNFQTNPKVNTIFLSKVGDTSIDLPEANVLIQISSHGGSRRQEAQRL 628 (776)
T ss_pred HHHHHHcCC------ce--EECCCchhHHHHHHHhcccCCccceEEEeeccCccccCCcccEEEEEcccccchHHHHHHH
Confidence 666655543 33 3899999999999999994 567889999999999999999999998755 4788999999
Q ss_pred cccccCCC
Q psy15524 749 GRTARVGH 756 (930)
Q Consensus 749 GRagR~g~ 756 (930)
||.-|+.+
T Consensus 629 GRILRAKk 636 (776)
T KOG1123|consen 629 GRILRAKK 636 (776)
T ss_pred HHHHHHhh
Confidence 99998754
|
|
| >KOG0349|consensus | Back alignment and domain information |
|---|
Probab=99.73 E-value=7.9e-18 Score=173.50 Aligned_cols=121 Identities=33% Similarity=0.450 Sum_probs=102.4
Q ss_pred eEEEEEcccHHHHHHHHHHHHHHhhhcC--CceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCcc
Q psy15524 58 IYAVIILPTRELALQTLEIFTKLCKSFT--WIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVE 135 (930)
Q Consensus 58 ~~~lvl~P~~~L~~q~~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~ 135 (930)
++++|+-|.+||+.|.++.++++--+.. .++.-++.||.....+...+..+.+|+|+||+|+.+.+.. +.+.+.+++
T Consensus 287 p~avivepsrelaEqt~N~i~~Fk~h~~np~~r~lLmiggv~~r~Q~~ql~~g~~ivvGtpgRl~~~is~-g~~~lt~cr 365 (725)
T KOG0349|consen 287 PEAVIVEPSRELAEQTHNQIEEFKMHTSNPEVRSLLMIGGVLKRTQCKQLKDGTHIVVGTPGRLLQPISK-GLVTLTHCR 365 (725)
T ss_pred cceeEecCcHHHHHHHHhhHHHHHhhcCChhhhhhhhhhhHHhHHHHHHhhcCceeeecCchhhhhhhhc-cceeeeeeE
Confidence 5589999999999999997777754443 2344478899999999999999999999999999999875 788899999
Q ss_pred EEEEcccccccccCcHHHHHHHHHHHhhcCC---CceEEEEEeecCC
Q psy15524 136 HLVLDEADRILDQGYERDIAEFLEILKKQKP---QFQSILLSATLTP 179 (930)
Q Consensus 136 ~vViDE~h~~~~~~~~~~~~~i~~~l~~~~~---~~~~i~lSAT~~~ 179 (930)
++|+||+|.++..++.+-|.++...++...+ .+|.+.-|||+..
T Consensus 366 FlvlDead~lL~qgy~d~I~r~h~qip~~tsdg~rlq~~vCsatlh~ 412 (725)
T KOG0349|consen 366 FLVLDEADLLLGQGYDDKIYRFHGQIPHMTSDGFRLQSPVCSATLHI 412 (725)
T ss_pred EEEecchhhhhhcccHHHHHHHhccchhhhcCCcccccceeeeEEeE
Confidence 9999999999999999999999888887654 4788888888753
|
|
| >KOG0354|consensus | Back alignment and domain information |
|---|
Probab=99.72 E-value=3e-17 Score=185.45 Aligned_cols=161 Identities=24% Similarity=0.293 Sum_probs=125.6
Q ss_pred cCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHHhhhc
Q psy15524 5 QVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSF 84 (930)
Q Consensus 5 ~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~ 84 (930)
.|+++|.+.+..++ |+|+||++|||+|||+++...+++++.. .+.+++|+++|++-|+.|+...+...+..
T Consensus 62 ~lR~YQ~eivq~AL-gkNtii~lPTG~GKTfIAa~Vm~nh~rw-------~p~~KiVF~aP~~pLv~QQ~a~~~~~~~~- 132 (746)
T KOG0354|consen 62 ELRNYQEELVQPAL-GKNTIIALPTGSGKTFIAAVIMKNHFEW-------RPKGKVVFLAPTRPLVNQQIACFSIYLIP- 132 (746)
T ss_pred cccHHHHHHhHHhh-cCCeEEEeecCCCccchHHHHHHHHHhc-------CCcceEEEeeCCchHHHHHHHHHhhccCc-
Confidence 58999999999999 9999999999999999999999999864 34578999999999999999777766543
Q ss_pred CCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCcHHHHH-HHHHHHhh
Q psy15524 85 TWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIA-EFLEILKK 163 (930)
Q Consensus 85 ~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~~~~~~-~i~~~l~~ 163 (930)
-.+....||.........+....+|+|+||+.+.+.+.+...-.++.+.++||||||+-....-...+. ..+.. +.
T Consensus 133 --~~~T~~l~~~~~~~~r~~i~~s~~vff~TpQil~ndL~~~~~~~ls~fs~iv~DE~Hra~kn~~Y~~Vmr~~l~~-k~ 209 (746)
T KOG0354|consen 133 --YSVTGQLGDTVPRSNRGEIVASKRVFFRTPQILENDLKSGLHDELSDFSLIVFDECHRTSKNHPYNNIMREYLDL-KN 209 (746)
T ss_pred --ccceeeccCccCCCchhhhhcccceEEeChHhhhhhcccccccccceEEEEEEcccccccccccHHHHHHHHHHh-hh
Confidence 334445556554445556777899999999999998877444447899999999999987765433333 33322 22
Q ss_pred cCCCceEEEEEeecCC
Q psy15524 164 QKPQFQSILLSATLTP 179 (930)
Q Consensus 164 ~~~~~~~i~lSAT~~~ 179 (930)
. ..|+|||||||+.
T Consensus 210 ~--~~qILgLTASpG~ 223 (746)
T KOG0354|consen 210 Q--GNQILGLTASPGS 223 (746)
T ss_pred c--cccEEEEecCCCc
Confidence 2 2399999999984
|
|
| >KOG0385|consensus | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.4e-15 Score=168.01 Aligned_cols=328 Identities=17% Similarity=0.262 Sum_probs=212.2
Q ss_pred CCCCHHHHHhHHhhh----cCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHHHH
Q psy15524 413 TQVTTVQQLSIQPIL----DGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTK 488 (930)
Q Consensus 413 ~~~~~iQ~~~i~~il----~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~ 488 (930)
..|+++|.+.++.+. +|-+.|+.-..|-|||+. .|..+..+...+ ..+|+ -||++|.-.|. .|..++++
T Consensus 166 g~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQ-tIs~l~yl~~~~----~~~GP-fLVi~P~StL~-NW~~Ef~r 238 (971)
T KOG0385|consen 166 GELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQ-TISLLGYLKGRK----GIPGP-FLVIAPKSTLD-NWMNEFKR 238 (971)
T ss_pred CccchhhhccHHHHHHHHhcCcccEeehhcccchHHH-HHHHHHHHHHhc----CCCCC-eEEEeeHhhHH-HHHHHHHH
Confidence 478999999887766 467899999999999997 556666655421 12344 68999976664 57888888
Q ss_pred hhccCCCcceEEEeCCCchHHHHHH-H--hcCCcEEEECchhHHHhhhccCCcccccceEEEEecchhhhhcCcHHHHHH
Q psy15524 489 LCKSFTWIVPSWLTGGEKMKSEKAR-I--RKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAE 565 (930)
Q Consensus 489 ~~~~~~~~~~~~~~gg~~~~~~~~~-~--~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~l~~~g~~~~l~~ 565 (930)
+. +.+.+.++.|.........+ + ....+|+|+|.+..+.-- ..+.--+++++|||||||+-+.. ..+..
T Consensus 239 f~---P~l~~~~~~Gdk~eR~~~~r~~~~~~~fdV~iTsYEi~i~dk---~~lk~~~W~ylvIDEaHRiKN~~--s~L~~ 310 (971)
T KOG0385|consen 239 FT---PSLNVVVYHGDKEERAALRRDIMLPGRFDVCITSYEIAIKDK---SFLKKFNWRYLVIDEAHRIKNEK--SKLSK 310 (971)
T ss_pred hC---CCcceEEEeCCHHHHHHHHHHhhccCCCceEeehHHHHHhhH---HHHhcCCceEEEechhhhhcchh--hHHHH
Confidence 76 44556667777543332221 1 235799999998775431 12233457899999999996553 34455
Q ss_pred HHHHHhhcCccceEEEEccccCHH----------------------HHHHHhh---------------------------
Q psy15524 566 FLEILKKQKPQFQSILLSATLTPA----------------------VQRLAGM--------------------------- 596 (930)
Q Consensus 566 i~~~l~~~~~~~q~vl~SAT~~~~----------------------~~~l~~~--------------------------- 596 (930)
+++.+. ....+++|.|+-.. ...|...
T Consensus 311 ~lr~f~----~~nrLLlTGTPLQNNL~ELWaLLnFllPdiF~~~e~F~swF~~~~~~~~~e~v~~Lh~vL~pFlLRR~K~ 386 (971)
T KOG0385|consen 311 ILREFK----TDNRLLLTGTPLQNNLHELWALLNFLLPDIFNSAEDFDSWFDFTNCEGDQELVSRLHKVLRPFLLRRIKS 386 (971)
T ss_pred HHHHhc----ccceeEeeCCcccccHHHHHHHHHhhchhhccCHHHHHHHHcccccccCHHHHHHHHhhhhHHHHHHHHH
Confidence 555554 23457888885311 0011000
Q ss_pred ----hcCCCEEEEccCC--------------CCcccC---------------------ccce-----ecC-CCceEEEEE
Q psy15524 597 ----TLQNPIQIDAADS--------------TDIHNT---------------------TDSL-----VIP-DSLKQHFIV 631 (930)
Q Consensus 597 ----~~~~~~~i~~~~~--------------~~~~~~---------------------~~~~-----~~~-~~~~~~~~~ 631 (930)
.+.....+.+... .+.... ++.+ +-| ......-.+
T Consensus 387 dVe~sLppKkE~~iyvgms~mQkk~Y~~iL~kdl~~~n~~~~~~k~kL~NI~mQLRKccnHPYLF~g~ePg~pyttdehL 466 (971)
T KOG0385|consen 387 DVEKSLPPKKELIIYVGMSSMQKKWYKAILMKDLDALNGEGKGEKTKLQNIMMQLRKCCNHPYLFDGAEPGPPYTTDEHL 466 (971)
T ss_pred hHhhcCCCcceeeEeccchHHHHHHHHHHHHhcchhhcccccchhhHHHHHHHHHHHhcCCccccCCCCCCCCCCcchHH
Confidence 0000000100000 000000 0000 111 111111123
Q ss_pred cCchhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHHHHHHHHHHhhcCCC
Q psy15524 632 TPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSVKS 711 (930)
Q Consensus 632 ~~~~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~v~~~F~~~~~ 711 (930)
+....|+..|-.+|..... .+.++|||..-....+.+..+..- +++.++.+.|.++.++|...++.|.....
T Consensus 467 v~nSGKm~vLDkLL~~Lk~-----~GhRVLIFSQmt~mLDILeDyc~~---R~y~ycRiDGSt~~eeR~~aI~~fn~~~s 538 (971)
T KOG0385|consen 467 VTNSGKMLVLDKLLPKLKE-----QGHRVLIFSQMTRMLDILEDYCML---RGYEYCRLDGSTSHEEREDAIEAFNAPPS 538 (971)
T ss_pred HhcCcceehHHHHHHHHHh-----CCCeEEEeHHHHHHHHHHHHHHHh---cCceeEeecCCCCcHHHHHHHHhcCCCCc
Confidence 3344566666666554332 288999999988888877776654 48999999999999999999999986553
Q ss_pred ---cEEEeccccccccCCCCccEEEEecCCCChhhHHhhhcccccCCCCceEEE--EeCcc
Q psy15524 712 ---GVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLL--FLIPS 767 (930)
Q Consensus 712 ---~vLv~T~~~~~GlDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~g~~~~--~~~~~ 767 (930)
-.|++|.+.+-|||+...++||.||..++|..-+|..-||.|.|+...+.+ +++.+
T Consensus 539 ~~FiFlLSTRAGGLGINL~aADtVIlyDSDWNPQ~DLQAmDRaHRIGQ~K~V~V~RLiten 599 (971)
T KOG0385|consen 539 EKFIFLLSTRAGGLGINLTAADTVILYDSDWNPQVDLQAMDRAHRIGQKKPVVVYRLITEN 599 (971)
T ss_pred ceEEEEEeccccccccccccccEEEEecCCCCchhhhHHHHHHHhhCCcCceEEEEEeccc
Confidence 368999999999999999999999999999999999999999999765554 45543
|
|
| >PRK13766 Hef nuclease; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.2e-16 Score=193.71 Aligned_cols=161 Identities=24% Similarity=0.240 Sum_probs=125.9
Q ss_pred ccCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHHhhh
Q psy15524 4 TQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKS 83 (930)
Q Consensus 4 ~~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~ 83 (930)
-+++++|++++..++.+ |+|+++|||+|||.++++++...+.. .+.++|||+||++|+.|+.+.+++++..
T Consensus 14 ~~~r~yQ~~~~~~~l~~-n~lv~~ptG~GKT~~a~~~i~~~l~~--------~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~ 84 (773)
T PRK13766 14 IEARLYQQLLAATALKK-NTLVVLPTGLGKTAIALLVIAERLHK--------KGGKVLILAPTKPLVEQHAEFFRKFLNI 84 (773)
T ss_pred CCccHHHHHHHHHHhcC-CeEEEcCCCccHHHHHHHHHHHHHHh--------CCCeEEEEeCcHHHHHHHHHHHHHHhCC
Confidence 36899999999988887 99999999999999999999887732 3457999999999999999999987642
Q ss_pred cCCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCcHHHHHHHHHHHhh
Q psy15524 84 FTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKK 163 (930)
Q Consensus 84 ~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~~~~~~~i~~~l~~ 163 (930)
. ...+..++|+.... ....+...++|+|+||+.+...+.. +.+.+.++++|||||||++...... ..+......
T Consensus 85 ~-~~~v~~~~g~~~~~-~r~~~~~~~~iiv~T~~~l~~~l~~-~~~~~~~~~liVvDEaH~~~~~~~~---~~i~~~~~~ 158 (773)
T PRK13766 85 P-EEKIVVFTGEVSPE-KRAELWEKAKVIVATPQVIENDLIA-GRISLEDVSLLIFDEAHRAVGNYAY---VYIAERYHE 158 (773)
T ss_pred C-CceEEEEeCCCCHH-HHHHHHhCCCEEEECHHHHHHHHHc-CCCChhhCcEEEEECCccccccccH---HHHHHHHHh
Confidence 2 23556666766544 3445566789999999999877654 5667889999999999998754322 234444555
Q ss_pred cCCCceEEEEEeecCC
Q psy15524 164 QKPQFQSILLSATLTP 179 (930)
Q Consensus 164 ~~~~~~~i~lSAT~~~ 179 (930)
....+.+++|||||..
T Consensus 159 ~~~~~~il~lTaTP~~ 174 (773)
T PRK13766 159 DAKNPLVLGLTASPGS 174 (773)
T ss_pred cCCCCEEEEEEcCCCC
Confidence 5567789999999854
|
|
| >KOG0947|consensus | Back alignment and domain information |
|---|
Probab=99.72 E-value=6.1e-17 Score=182.28 Aligned_cols=165 Identities=23% Similarity=0.231 Sum_probs=135.5
Q ss_pred CCccCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHHh
Q psy15524 2 NITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLC 81 (930)
Q Consensus 2 g~~~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~ 81 (930)
+| .|-++|++||-++..|.+++|.|+|.+|||+++-.++.-.- ..+.+++|-+|.++|.+|.++.|++.+
T Consensus 295 pF-elD~FQk~Ai~~lerg~SVFVAAHTSAGKTvVAEYAialaq---------~h~TR~iYTSPIKALSNQKfRDFk~tF 364 (1248)
T KOG0947|consen 295 PF-ELDTFQKEAIYHLERGDSVFVAAHTSAGKTVVAEYAIALAQ---------KHMTRTIYTSPIKALSNQKFRDFKETF 364 (1248)
T ss_pred CC-CccHHHHHHHHHHHcCCeEEEEecCCCCcchHHHHHHHHHH---------hhccceEecchhhhhccchHHHHHHhc
Confidence 45 48899999999999999999999999999999766554322 235679999999999999999999987
Q ss_pred hhcCCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCcHHHHHHHHHHH
Q psy15524 82 KSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEIL 161 (930)
Q Consensus 82 ~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~~~~~~~i~~~l 161 (930)
..- +.++|+.... ..+.++|+|.|.|.+++.+ +.--++++.+||+||+|-+.|..++..++.++-.+
T Consensus 365 ~Dv-----gLlTGDvqin-------PeAsCLIMTTEILRsMLYr-gadliRDvE~VIFDEVHYiND~eRGvVWEEViIMl 431 (1248)
T KOG0947|consen 365 GDV-----GLLTGDVQIN-------PEASCLIMTTEILRSMLYR-GADLIRDVEFVIFDEVHYINDVERGVVWEEVIIML 431 (1248)
T ss_pred ccc-----ceeecceeeC-------CCcceEeehHHHHHHHHhc-ccchhhccceEEEeeeeecccccccccceeeeeec
Confidence 642 3677776433 3467999999999999987 33346889999999999999999988888877766
Q ss_pred hhcCCCceEEEEEeecCCCcccccccccccc
Q psy15524 162 KKQKPQFQSILLSATLTPATCWCKHTETLKF 192 (930)
Q Consensus 162 ~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~ 192 (930)
+ .++++|+||||.++...++.|.+.++-
T Consensus 432 P---~HV~~IlLSATVPN~~EFA~WIGRtK~ 459 (1248)
T KOG0947|consen 432 P---RHVNFILLSATVPNTLEFADWIGRTKQ 459 (1248)
T ss_pred c---ccceEEEEeccCCChHHHHHHhhhccC
Confidence 5 456999999999999888888776653
|
|
| >PRK12899 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.71 E-value=6e-17 Score=187.73 Aligned_cols=134 Identities=18% Similarity=0.220 Sum_probs=115.5
Q ss_pred CCCccC---cHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHH
Q psy15524 1 MNITQV---TTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIF 77 (930)
Q Consensus 1 ~g~~~l---~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~ 77 (930)
+||+.| +|+|.++++.++.++++++.++||+|||++|++|++..+.. +..++||+||++||.|.++.+
T Consensus 85 ~G~~~p~~~tp~qvQ~I~~i~l~~gvIAeaqTGeGKTLAf~LP~l~~aL~---------g~~v~IVTpTrELA~Qdae~m 155 (970)
T PRK12899 85 SGYHQQWDMVPYDVQILGAIAMHKGFITEMQTGEGKTLTAVMPLYLNALT---------GKPVHLVTVNDYLAQRDCEWV 155 (970)
T ss_pred ccccCCCCCChHHHHHhhhhhcCCCeEEEeCCCCChHHHHHHHHHHHHhh---------cCCeEEEeCCHHHHHHHHHHH
Confidence 478888 99999999999999999999999999999999999987754 123899999999999999999
Q ss_pred HHHhhhcCCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHH-HHHHhcCCCccC-------CCccEEEEcccccccc
Q psy15524 78 TKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRL-LDHCKHTETLKF-------SKVEHLVLDEADRILD 147 (930)
Q Consensus 78 ~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l-~~~l~~~~~~~l-------~~l~~vViDE~h~~~~ 147 (930)
..+...++ +.+.+++||.....+.... ++||+||||+++ .++++. +.+.+ +.+.++||||||.|+-
T Consensus 156 ~~L~k~lG-LsV~~i~GG~~~~eq~~~y--~~DIVygTPgRLgfDyLrd-~~~~~~~~~~vqr~~~~~IIDEADsmLi 229 (970)
T PRK12899 156 GSVLRWLG-LTTGVLVSGSPLEKRKEIY--QCDVVYGTASEFGFDYLRD-NSIATRKEEQVGRGFYFAIIDEVDSILI 229 (970)
T ss_pred HHHHhhcC-CeEEEEeCCCCHHHHHHHc--CCCEEEECCChhHHHHhhC-CCCCcCHHHhhcccccEEEEechhhhhh
Confidence 99988776 7888899998888776554 599999999999 999876 43443 3668999999998863
|
|
| >COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.70 E-value=7.8e-16 Score=164.21 Aligned_cols=160 Identities=23% Similarity=0.204 Sum_probs=127.9
Q ss_pred cCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHHhhhc
Q psy15524 5 QVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSF 84 (930)
Q Consensus 5 ~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~ 84 (930)
+++.+|......++.+ |+|++.|||-|||.++++.+...+.. .++ ++|+++||+-|+.|+++.|.+...-
T Consensus 15 e~R~YQ~~i~a~al~~-NtLvvlPTGLGKT~IA~~V~~~~l~~-------~~~-kvlfLAPTKPLV~Qh~~~~~~v~~i- 84 (542)
T COG1111 15 EPRLYQLNIAAKALFK-NTLVVLPTGLGKTFIAAMVIANRLRW-------FGG-KVLFLAPTKPLVLQHAEFCRKVTGI- 84 (542)
T ss_pred cHHHHHHHHHHHHhhc-CeEEEecCCccHHHHHHHHHHHHHHh-------cCC-eEEEecCCchHHHHHHHHHHHHhCC-
Confidence 5788999988888776 99999999999999999999988864 334 8999999999999999999998753
Q ss_pred CCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCcHHHHHHHHHHHhhc
Q psy15524 85 TWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQ 164 (930)
Q Consensus 85 ~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~~~~~~~i~~~l~~~ 164 (930)
+.-.+..++|..... .+..++...+|+|+||+.+.+-+.. +.+++.++.++|+||||+-.+..- +..+....-..
T Consensus 85 p~~~i~~ltGev~p~-~R~~~w~~~kVfvaTPQvveNDl~~-Grid~~dv~~lifDEAHRAvGnyA---Yv~Va~~y~~~ 159 (542)
T COG1111 85 PEDEIAALTGEVRPE-EREELWAKKKVFVATPQVVENDLKA-GRIDLDDVSLLIFDEAHRAVGNYA---YVFVAKEYLRS 159 (542)
T ss_pred ChhheeeecCCCChH-HHHHHHhhCCEEEeccHHHHhHHhc-CccChHHceEEEechhhhccCcch---HHHHHHHHHHh
Confidence 334555677766554 4455666789999999999887765 889999999999999998765432 23444444445
Q ss_pred CCCceEEEEEeecCC
Q psy15524 165 KPQFQSILLSATLTP 179 (930)
Q Consensus 165 ~~~~~~i~lSAT~~~ 179 (930)
..++.++||||||+.
T Consensus 160 ~k~~~ilgLTASPGs 174 (542)
T COG1111 160 AKNPLILGLTASPGS 174 (542)
T ss_pred ccCceEEEEecCCCC
Confidence 567899999999976
|
|
| >smart00487 DEXDc DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Probab=99.70 E-value=4.7e-16 Score=158.18 Aligned_cols=167 Identities=37% Similarity=0.578 Sum_probs=131.1
Q ss_pred CCCccCcHHHHHHHHHhhcC-CcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHH
Q psy15524 1 MNITQVTTVQQLSIQPILDG-GDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTK 79 (930)
Q Consensus 1 ~g~~~l~~~Q~~ai~~~~~g-~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~ 79 (930)
+++.+|+++|.+++..+..+ +++++.+|||+|||.++..+++..+... ...+++|++|+.+++.|+.+.+..
T Consensus 4 ~~~~~~~~~Q~~~~~~~~~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~-------~~~~~l~~~p~~~~~~~~~~~~~~ 76 (201)
T smart00487 4 FGFEPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALKRG-------KGKRVLVLVPTRELAEQWAEELKK 76 (201)
T ss_pred cCCCCCCHHHHHHHHHHHcCCCcEEEECCCCCchhHHHHHHHHHHhccc-------CCCcEEEEeCCHHHHHHHHHHHHH
Confidence 36788999999999999988 9999999999999999999999887642 134599999999999999999998
Q ss_pred HhhhcCCceeEEeeCCCchHHHHHHhcCCC-cEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCcHHHHHHHH
Q psy15524 80 LCKSFTWIVPSWLTGGEKMKSEKARIRKGI-SILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFL 158 (930)
Q Consensus 80 ~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~-~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~~~~~~~i~ 158 (930)
.+........ ...++............+. +++++|++.+.+.+.. ......+++++|+||+|.+....+...+..++
T Consensus 77 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~t~~~l~~~~~~-~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~ 154 (201)
T smart00487 77 LGPSLGLKVV-GLYGGDSKREQLRKLESGKTDILVTTPGRLLDLLEN-DLLELSNVDLVILDEAHRLLDGGFGDQLEKLL 154 (201)
T ss_pred HhccCCeEEE-EEeCCcchHHHHHHHhcCCCCEEEeChHHHHHHHHc-CCcCHhHCCEEEEECHHHHhcCCcHHHHHHHH
Confidence 8754331233 3444444344444444454 9999999999998876 33567789999999999998767777777777
Q ss_pred HHHhhcCCCceEEEEEeecCC
Q psy15524 159 EILKKQKPQFQSILLSATLTP 179 (930)
Q Consensus 159 ~~l~~~~~~~~~i~lSAT~~~ 179 (930)
..+ .+..+++++|||++.
T Consensus 155 ~~~---~~~~~~v~~saT~~~ 172 (201)
T smart00487 155 KLL---PKNVQLLLLSATPPE 172 (201)
T ss_pred HhC---CccceEEEEecCCch
Confidence 666 445789999999974
|
|
| >PRK05580 primosome assembly protein PriA; Validated | Back alignment and domain information |
|---|
Probab=99.70 E-value=7.3e-17 Score=191.16 Aligned_cols=160 Identities=20% Similarity=0.262 Sum_probs=119.5
Q ss_pred cCcHHHHHHHHHhhcC---CcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHHh
Q psy15524 5 QVTTVQQLSIQPILDG---GDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLC 81 (930)
Q Consensus 5 ~l~~~Q~~ai~~~~~g---~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~ 81 (930)
.||+.|+++++.+.++ .++++++|||||||.+|+.++...+.. |.++|||+|+++|+.|+++++++.+
T Consensus 144 ~Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l~~i~~~l~~---------g~~vLvLvPt~~L~~Q~~~~l~~~f 214 (679)
T PRK05580 144 TLNPEQAAAVEAIRAAAGFSPFLLDGVTGSGKTEVYLQAIAEVLAQ---------GKQALVLVPEIALTPQMLARFRARF 214 (679)
T ss_pred CCCHHHHHHHHHHHhccCCCcEEEECCCCChHHHHHHHHHHHHHHc---------CCeEEEEeCcHHHHHHHHHHHHHHh
Confidence 5899999999999874 789999999999999999888777643 5579999999999999999998865
Q ss_pred hhcCCceeEEeeCCCchHHH----HHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCcH-H--HH
Q psy15524 82 KSFTWIVPSWLTGGEKMKSE----KARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYE-R--DI 154 (930)
Q Consensus 82 ~~~~~~~~~~~~g~~~~~~~----~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~~-~--~~ 154 (930)
. ..+..++|+.+..+. .....+.++|+|||+..+. ..+.++++|||||+|....++.. + ..
T Consensus 215 g----~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~--------~p~~~l~liVvDEeh~~s~~~~~~p~y~~ 282 (679)
T PRK05580 215 G----APVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALF--------LPFKNLGLIIVDEEHDSSYKQQEGPRYHA 282 (679)
T ss_pred C----CCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc--------ccccCCCEEEEECCCccccccCcCCCCcH
Confidence 3 356667777654332 2233456899999997652 34788999999999987644321 1 12
Q ss_pred HHHHHHHhhcCCCceEEEEEeecCCCcccccc
Q psy15524 155 AEFLEILKKQKPQFQSILLSATLTPATCWCKH 186 (930)
Q Consensus 155 ~~i~~~l~~~~~~~~~i~lSAT~~~~~~~~~~ 186 (930)
+.+ ..++....+.+++++|||++.++.....
T Consensus 283 r~v-a~~ra~~~~~~~il~SATps~~s~~~~~ 313 (679)
T PRK05580 283 RDL-AVVRAKLENIPVVLGSATPSLESLANAQ 313 (679)
T ss_pred HHH-HHHHhhccCCCEEEEcCCCCHHHHHHHh
Confidence 222 2334445678999999999877655433
|
|
| >TIGR03714 secA2 accessory Sec system translocase SecA2 | Back alignment and domain information |
|---|
Probab=99.69 E-value=9.6e-16 Score=177.30 Aligned_cols=132 Identities=18% Similarity=0.189 Sum_probs=97.4
Q ss_pred CcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHHhhhcC
Q psy15524 6 VTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFT 85 (930)
Q Consensus 6 l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~ 85 (930)
++|+|.+++..+..++..++.++||+|||++|.+|++..... +..++|++|+++||.|.++.+..+...++
T Consensus 69 lrpydVQlig~l~l~~G~Iaem~TGeGKTLta~Lpa~l~aL~---------g~~V~VVTpn~yLA~Rdae~m~~l~~~LG 139 (762)
T TIGR03714 69 MFPYDVQVLGAIVLHQGNIAEMKTGEGKTLTATMPLYLNALT---------GKGAMLVTTNDYLAKRDAEEMGPVYEWLG 139 (762)
T ss_pred CCccHHHHHHHHHhcCCceeEecCCcchHHHHHHHHHHHhhc---------CCceEEeCCCHHHHHHHHHHHHHHHhhcC
Confidence 455555566655555557999999999999999998766543 34599999999999999999999988777
Q ss_pred CceeEEeeCCC---chHHHHHHhcCCCcEEEEChHHH-HHHHhc-----CCCccCCCccEEEEcccccccc
Q psy15524 86 WIVPSWLTGGE---KMKSEKARIRKGISILVATPGRL-LDHCKH-----TETLKFSKVEHLVLDEADRILD 147 (930)
Q Consensus 86 ~~~~~~~~g~~---~~~~~~~~l~~~~~Ilv~Tp~~l-~~~l~~-----~~~~~l~~l~~vViDE~h~~~~ 147 (930)
+.+++..++. ...........+++|++|||+++ .+.+.. .....++.+.++||||||.|+-
T Consensus 140 -Lsv~~~~~~s~~~~~~~~~rr~~y~~dIvygTp~~LgfDyLrD~l~~~~~~~~~r~l~~~IVDEaDsILi 209 (762)
T TIGR03714 140 -LTVSLGVVDDPDEEYDANEKRKIYNSDIVYTTNSALGFDYLIDNLASNKEGKFLRPFNYVIVDEVDSVLL 209 (762)
T ss_pred -CcEEEEECCCCccccCHHHHHHhCCCCEEEECchhhhhhHHHHHhhcchhhcccccCcEEEEecHhhHhh
Confidence 5566555542 23333334446799999999999 444432 1234478899999999999853
|
Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii. |
| >KOG0925|consensus | Back alignment and domain information |
|---|
Probab=99.69 E-value=6.6e-15 Score=154.70 Aligned_cols=331 Identities=15% Similarity=0.193 Sum_probs=207.5
Q ss_pred CCCCCCCCCHHHHHHHHhcCCCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEE
Q psy15524 391 SYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAV 470 (930)
Q Consensus 391 ~f~~l~~l~~~~~~~l~~~~~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~l 470 (930)
.|... ..++.-.+.|.+.... .....+.+-+..+.+++-+++.+.||||||...--..++.... ....+.
T Consensus 26 pf~~~-p~s~rY~~ilk~R~~L-Pvw~~k~~F~~~l~~nQ~~v~vGetgsGKttQiPq~~~~~~~~--------~~~~v~ 95 (699)
T KOG0925|consen 26 PFNGK-PYSQRYYDILKKRREL-PVWEQKEEFLKLLLNNQIIVLVGETGSGKTTQIPQFVLEYELS--------HLTGVA 95 (699)
T ss_pred CCCCC-cCcHHHHHHHHHHhcC-chHHhHHHHHHHHhcCceEEEEecCCCCccccCcHHHHHHHHh--------hcccee
Confidence 45555 4556555655542111 1122334445555566779999999999998533334444332 124567
Q ss_pred EEccCHHHHHHHHHHHHHhhccCCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhccCCcccccceEEEEec
Q psy15524 471 IILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDE 550 (930)
Q Consensus 471 il~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlDE 550 (930)
.--|.|--|.+++.+...-..-.-...+++...-++.......++ +||.|.|+.-.-+. -.+.+.+++|+||
T Consensus 96 CTQprrvaamsva~RVadEMDv~lG~EVGysIrfEdC~~~~T~Lk------y~tDgmLlrEams~--p~l~~y~viiLDe 167 (699)
T KOG0925|consen 96 CTQPRRVAAMSVAQRVADEMDVTLGEEVGYSIRFEDCTSPNTLLK------YCTDGMLLREAMSD--PLLGRYGVIILDE 167 (699)
T ss_pred ecCchHHHHHHHHHHHHHHhccccchhccccccccccCChhHHHH------HhcchHHHHHHhhC--cccccccEEEech
Confidence 777999999888877665443211112222222222222222222 68888877655442 3468899999999
Q ss_pred chhhhhcCcH-HHHHHHHHHHhhcCccceEEEEccccCHHHHHHHhhhcCCCEEEEccCCCCcccCccceecCCCceEEE
Q psy15524 551 ADRILDQGYE-RDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHF 629 (930)
Q Consensus 551 ah~l~~~g~~-~~l~~i~~~l~~~~~~~q~vl~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 629 (930)
||. .... +.+..+++.....+++.++|.+|||+.. .-...++.|+..+.+.+. ...+-.|
T Consensus 168 ahE---RtlATDiLmGllk~v~~~rpdLk~vvmSatl~a---~Kfq~yf~n~Pll~vpg~-------------~PvEi~Y 228 (699)
T KOG0925|consen 168 AHE---RTLATDILMGLLKEVVRNRPDLKLVVMSATLDA---EKFQRYFGNAPLLAVPGT-------------HPVEIFY 228 (699)
T ss_pred hhh---hhHHHHHHHHHHHHHHhhCCCceEEEeecccch---HHHHHHhCCCCeeecCCC-------------CceEEEe
Confidence 993 3322 3334444444455679999999999854 233455666655555431 1233355
Q ss_pred EEcCchhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhc----C--CCceEEEecCCCCHHHHHHHH
Q psy15524 630 IVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVL----G--ENIAFFKLHGSMSQSERTEVF 703 (930)
Q Consensus 630 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~----~--~~~~~~~lhg~~~~~~R~~v~ 703 (930)
...+..+.+.+....+.+.+.. +..+-++||..+.++.+..++.+.... . ....+..+| +.+...++
T Consensus 229 t~e~erDylEaairtV~qih~~---ee~GDilvFLtgeeeIe~aC~~i~re~~~L~~~~g~l~v~PLy----P~~qq~iF 301 (699)
T KOG0925|consen 229 TPEPERDYLEAAIRTVLQIHMC---EEPGDILVFLTGEEEIEDACRKISREVDNLGPQVGPLKVVPLY----PAQQQRIF 301 (699)
T ss_pred cCCCChhHHHHHHHHHHHHHhc---cCCCCEEEEecCHHHHHHHHHHHHHHHHhhccccCCceEEecC----chhhcccc
Confidence 5555566666666655554433 237899999999999888877776321 1 145778888 33344444
Q ss_pred HHhhc---C--CCcEEEeccccccccCCCCccEEEEec------------------CCCChhhHHhhhcccccCCCCceE
Q psy15524 704 KTFRS---V--KSGVLICTDVAARGLDLPLVDWIVQYT------------------APSSSTDYVHRVGRTARVGHEGSS 760 (930)
Q Consensus 704 ~~F~~---~--~~~vLv~T~~~~~GlDip~v~~VI~~~------------------~p~s~~~y~qr~GRagR~g~~g~~ 760 (930)
+.-.. | ..+|+|+|++++..+.+++|.+||.-+ .|-|..+-.||.||+||. ++|.|
T Consensus 302 ep~p~~~~~~~~RkvVvstniaetsltidgiv~VIDpGf~kqkVYNPRIRvesllv~PISkasA~qR~gragrt-~pGkc 380 (699)
T KOG0925|consen 302 EPAPEKRNGAYGRKVVVSTNIAETSLTIDGIVFVIDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-RPGKC 380 (699)
T ss_pred CCCCcccCCCccceEEEEecchheeeeeccEEEEecCchhhhcccCcceeeeeeeeccchHhHHHHHhhhccCC-CCCce
Confidence 43321 2 346999999999999999999999755 456778889999999995 59999
Q ss_pred EEEeCc
Q psy15524 761 LLFLIP 766 (930)
Q Consensus 761 ~~~~~~ 766 (930)
+.+++.
T Consensus 381 frLYte 386 (699)
T KOG0925|consen 381 FRLYTE 386 (699)
T ss_pred EEeecH
Confidence 999984
|
|
| >KOG0948|consensus | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.1e-16 Score=175.99 Aligned_cols=158 Identities=23% Similarity=0.248 Sum_probs=131.4
Q ss_pred cCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHHhhhc
Q psy15524 5 QVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSF 84 (930)
Q Consensus 5 ~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~ 84 (930)
+|-|+|..||..+-.+.++||+|.|.+|||.++-.++...+.. ..+++|-+|.++|.+|.++++..-+.+
T Consensus 129 ~LDpFQ~~aI~Cidr~eSVLVSAHTSAGKTVVAeYAIA~sLr~---------kQRVIYTSPIKALSNQKYREl~~EF~D- 198 (1041)
T KOG0948|consen 129 TLDPFQSTAIKCIDRGESVLVSAHTSAGKTVVAEYAIAMSLRE---------KQRVIYTSPIKALSNQKYRELLEEFKD- 198 (1041)
T ss_pred ccCchHhhhhhhhcCCceEEEEeecCCCcchHHHHHHHHHHHh---------cCeEEeeChhhhhcchhHHHHHHHhcc-
Confidence 5789999999999999999999999999999999888887755 346999999999999999999888754
Q ss_pred CCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCcHHHHHHHHHHHhhc
Q psy15524 85 TWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQ 164 (930)
Q Consensus 85 ~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~~~~~~~i~~~l~~~ 164 (930)
+++++|+.... ..+.++|+|.|.|.+++.+ +.--++.+.+||+||+|-|-|..++-.++.-+-.++
T Consensus 199 ----VGLMTGDVTIn-------P~ASCLVMTTEILRsMLYR-GSEvmrEVaWVIFDEIHYMRDkERGVVWEETIIllP-- 264 (1041)
T KOG0948|consen 199 ----VGLMTGDVTIN-------PDASCLVMTTEILRSMLYR-GSEVMREVAWVIFDEIHYMRDKERGVVWEETIILLP-- 264 (1041)
T ss_pred ----cceeecceeeC-------CCCceeeeHHHHHHHHHhc-cchHhheeeeEEeeeehhccccccceeeeeeEEecc--
Confidence 55667776433 3467999999999999987 444579999999999999999887766665554444
Q ss_pred CCCceEEEEEeecCCCccccccc
Q psy15524 165 KPQFQSILLSATLTPATCWCKHT 187 (930)
Q Consensus 165 ~~~~~~i~lSAT~~~~~~~~~~~ 187 (930)
.+++.++||||+|+...++.|.
T Consensus 265 -~~vr~VFLSATiPNA~qFAeWI 286 (1041)
T KOG0948|consen 265 -DNVRFVFLSATIPNARQFAEWI 286 (1041)
T ss_pred -ccceEEEEeccCCCHHHHHHHH
Confidence 4569999999999987766553
|
|
| >TIGR00963 secA preprotein translocase, SecA subunit | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.5e-16 Score=180.77 Aligned_cols=131 Identities=18% Similarity=0.220 Sum_probs=107.0
Q ss_pred CCccCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHHh
Q psy15524 2 NITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLC 81 (930)
Q Consensus 2 g~~~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~ 81 (930)
|. .|+++|..+...+..|+ ++.++||+|||++|.+|++-.... |.++.|++||.+||.|.++.+..+.
T Consensus 54 g~-~p~~vQlig~~~l~~G~--Iaem~TGeGKTLva~lpa~l~aL~---------G~~V~VvTpt~~LA~qdae~~~~l~ 121 (745)
T TIGR00963 54 GM-RPFDVQLIGGIALHKGK--IAEMKTGEGKTLTATLPAYLNALT---------GKGVHVVTVNDYLAQRDAEWMGQVY 121 (745)
T ss_pred CC-CccchHHhhhhhhcCCc--eeeecCCCccHHHHHHHHHHHHHh---------CCCEEEEcCCHHHHHHHHHHHHHHh
Confidence 44 58899999988888776 999999999999999999644332 3459999999999999999999999
Q ss_pred hhcCCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHH-HHHHhcCC-----CccCCCccEEEEcccccccc
Q psy15524 82 KSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRL-LDHCKHTE-----TLKFSKVEHLVLDEADRILD 147 (930)
Q Consensus 82 ~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l-~~~l~~~~-----~~~l~~l~~vViDE~h~~~~ 147 (930)
..++ +.++++.|+......... -.++|+||||+++ .++++..- .+.++.+.++||||+|.++-
T Consensus 122 ~~LG-Lsv~~i~g~~~~~~r~~~--y~~dIvyGT~~rlgfDyLrd~~~~~~~~~~~r~l~~aIIDEaDs~LI 190 (745)
T TIGR00963 122 RFLG-LSVGLILSGMSPEERREA--YACDITYGTNNELGFDYLRDNMAHSKEEKVQRPFHFAIIDEVDSILI 190 (745)
T ss_pred ccCC-CeEEEEeCCCCHHHHHHh--cCCCEEEECCCchhhHHHhcccccchhhhhccccceeEeecHHHHhH
Confidence 8877 888889988775544333 3589999999999 88876531 34578999999999998864
|
The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus. |
| >PRK09200 preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.8e-15 Score=175.33 Aligned_cols=132 Identities=23% Similarity=0.256 Sum_probs=106.8
Q ss_pred CCCccCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHH
Q psy15524 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKL 80 (930)
Q Consensus 1 ~g~~~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~ 80 (930)
+|. .|+++|..+++.+..|+ ++.+.||+|||++|.+|++..... |.+++|++||++||.|.++.+..+
T Consensus 75 ~g~-~p~~vQl~~~~~l~~G~--Iaem~TGeGKTL~a~lp~~l~al~---------G~~v~VvTpt~~LA~qd~e~~~~l 142 (790)
T PRK09200 75 LGM-RPYDVQLIGALVLHEGN--IAEMQTGEGKTLTATMPLYLNALE---------GKGVHLITVNDYLAKRDAEEMGQV 142 (790)
T ss_pred hCC-CCchHHHHhHHHHcCCc--eeeecCCCcchHHHHHHHHHHHHc---------CCCeEEEeCCHHHHHHHHHHHHHH
Confidence 355 68999999999888886 999999999999999999865543 567999999999999999999999
Q ss_pred hhhcCCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHH-HHHHhcC-----CCccCCCccEEEEccccccc
Q psy15524 81 CKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRL-LDHCKHT-----ETLKFSKVEHLVLDEADRIL 146 (930)
Q Consensus 81 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l-~~~l~~~-----~~~~l~~l~~vViDE~h~~~ 146 (930)
...++ +.++++.|+.....+.+. ..++||++|||+++ .+++... ....++.+.++||||||.|+
T Consensus 143 ~~~lG-l~v~~i~g~~~~~~~r~~-~y~~dIvygT~~~l~fDyLrd~~~~~~~~~~~r~~~~~IvDEaDsiL 212 (790)
T PRK09200 143 YEFLG-LTVGLNFSDIDDASEKKA-IYEADIIYTTNSELGFDYLRDNLADSKEDKVQRPLNYAIIDEIDSIL 212 (790)
T ss_pred HhhcC-CeEEEEeCCCCcHHHHHH-hcCCCEEEECCccccchhHHhccccchhhhcccccceEEEeccccce
Confidence 98877 888889888874333333 34599999999998 4444321 22346889999999999875
|
|
| >COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.5e-14 Score=166.42 Aligned_cols=332 Identities=18% Similarity=0.190 Sum_probs=211.7
Q ss_pred CCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHHHHhhccC
Q psy15524 414 QVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSF 493 (930)
Q Consensus 414 ~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~ 493 (930)
.++|+-.|.+..+.-+..-++.+.||-||||++.+|+.-..+. |..+.+++..-.||..-++.+.+++.+.
T Consensus 78 g~~~~dVQliG~i~lh~g~iaEM~TGEGKTL~atlp~ylnaL~---------gkgVhvVTvNdYLA~RDae~m~~l~~~L 148 (822)
T COG0653 78 GMRHFDVQLLGGIVLHLGDIAEMRTGEGKTLVATLPAYLNALA---------GKGVHVVTVNDYLARRDAEWMGPLYEFL 148 (822)
T ss_pred CCChhhHHHhhhhhhcCCceeeeecCCchHHHHHHHHHHHhcC---------CCCcEEeeehHHhhhhCHHHHHHHHHHc
Confidence 3556667777777778888999999999999999999865543 7789999999999999999999999877
Q ss_pred CCcceEEEeCCCchHHHHHHHhcCCcEEEECchhH-HHhhhc-----cCCcccccceEEEEecchhhh----------hc
Q psy15524 494 TWIVPSWLTGGEKMKSEKARIRKGISILVATPGRL-LDHCKH-----TETLKFSKVEHLVLDEADRIL----------DQ 557 (930)
Q Consensus 494 ~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl-~~~l~~-----~~~~~~~~l~~lVlDEah~l~----------~~ 557 (930)
+. .+++...+.. .+.++....+||.++|...| .|.++. ........+.+.|+||+|.++ ..
T Consensus 149 Gl-svG~~~~~m~--~~ek~~aY~~DItY~TnnElGFDYLRDNm~~~~ee~vqr~~~faIvDEvDSILIDEARtPLiISG 225 (822)
T COG0653 149 GL-SVGVILAGMS--PEEKRAAYACDITYGTNNELGFDYLRDNMVTSQEEKVQRGLNFAIVDEVDSILIDEARTPLIISG 225 (822)
T ss_pred CC-ceeeccCCCC--hHHHHHHHhcCceeccccccCcchhhhhhhccHHHhhhccCCeEEEcchhheeeeccccceeeec
Confidence 64 4555555543 33334456799999999887 233322 122235568999999999875 11
Q ss_pred ------CcHHHHHHHHHHHhhcC-----ccceEEEEccccCHHHHH------------------------HHhhhcCCCE
Q psy15524 558 ------GYERDIAEFLEILKKQK-----PQFQSILLSATLTPAVQR------------------------LAGMTLQNPI 602 (930)
Q Consensus 558 ------g~~~~l~~i~~~l~~~~-----~~~q~vl~SAT~~~~~~~------------------------l~~~~~~~~~ 602 (930)
.....+..++..+.... ...+.+.++-.=-...+. .-....+|-.
T Consensus 226 ~~~~~~~~Y~~~~~~v~~l~~~~d~~iDek~k~v~lte~G~~kae~~f~~~~Ly~~en~~~~h~~~~alrA~~l~~~D~d 305 (822)
T COG0653 226 PAEDSSELYKKVDDLVRLLSEDEDFTIDEKSKNVSLTESGLEKAEELLGIENLYDLENVNLVHHLNQALRAHILFFRDVD 305 (822)
T ss_pred ccccCchHHHHHHHHHHHhccccceeecchhcccccchhhHHHHHHHhCcccccchhhHHHHhhHHHHHHHHHHhhcCCe
Confidence 12344445554443221 112233332210000000 0001111111
Q ss_pred EEEccCC-------------------------------------------------------------CCc-------cc
Q psy15524 603 QIDAADS-------------------------------------------------------------TDI-------HN 614 (930)
Q Consensus 603 ~i~~~~~-------------------------------------------------------------~~~-------~~ 614 (930)
+|-..+. ... -.
T Consensus 306 YIVrd~ev~IvD~ftGR~m~gRr~s~GLhQAiEAKEgv~i~~e~~tlatITfQn~fR~y~kl~gmTGTa~te~~EF~~iY 385 (822)
T COG0653 306 YIVRDGEVVIVDEFTGRMMEGRRWSDGLHQAIEAKEGVEIQEENQTLATITFQNLFRLYPKLAGMTGTADTEEEEFDVIY 385 (822)
T ss_pred eEEecCeEEEEecccCCcccCcCCCchhHHHHHHhcCCcccccceeehhhhHHHHHhhhhhhcCCCCcchhhhhhhhhcc
Confidence 1100000 000 00
Q ss_pred CccceecCCCce------EEEEEcCchhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCCceEE
Q psy15524 615 TTDSLVIPDSLK------QHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFF 688 (930)
Q Consensus 615 ~~~~~~~~~~~~------~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~ 688 (930)
..+...+|.... .-.+....+.|+.+....+...... ++|+||-..+.+..+.+.++|.+. +++..
T Consensus 386 ~l~vv~iPTnrp~~R~D~~D~vy~t~~~K~~Aiv~~I~~~~~~-----gqPvLvgT~sie~SE~ls~~L~~~---~i~h~ 457 (822)
T COG0653 386 GLDVVVIPTNRPIIRLDEPDLVYKTEEEKFKAIVEDIKERHEK-----GQPVLVGTVSIEKSELLSKLLRKA---GIPHN 457 (822)
T ss_pred CCceeeccCCCcccCCCCccccccchHHHHHHHHHHHHHHHhc-----CCCEEEcCcceecchhHHHHHHhc---CCCce
Confidence 001111221111 1112344556777777777664332 889999999999999999999875 77777
Q ss_pred EecCCCCHHHHHHHHHHhhcCCCcEEEeccccccccCCC---Cc--------cEEEEecCCCChhhHHhhhcccccCCCC
Q psy15524 689 KLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLP---LV--------DWIVQYTAPSSSTDYVHRVGRTARVGHE 757 (930)
Q Consensus 689 ~lhg~~~~~~R~~v~~~F~~~~~~vLv~T~~~~~GlDip---~v--------~~VI~~~~p~s~~~y~qr~GRagR~g~~ 757 (930)
.+++.-...+-..+.++.+.|. |-|||++|+||.||. +. -+||-..-..|..---|.-||+||.|.+
T Consensus 458 VLNAk~h~~EA~Iia~AG~~ga--VTiATNMAGRGTDIkLg~~~~~V~~lGGL~VIgTERhESRRIDnQLRGRsGRQGDp 535 (822)
T COG0653 458 VLNAKNHAREAEIIAQAGQPGA--VTIATNMAGRGTDIKLGGNPEFVMELGGLHVIGTERHESRRIDNQLRGRAGRQGDP 535 (822)
T ss_pred eeccccHHHHHHHHhhcCCCCc--cccccccccCCcccccCCCHHHHHHhCCcEEEecccchhhHHHHHhhcccccCCCc
Confidence 7788877666666666555555 899999999999993 32 1677777777777777999999999999
Q ss_pred ceEEEEeCcc
Q psy15524 758 GSSLLFLIPS 767 (930)
Q Consensus 758 g~~~~~~~~~ 767 (930)
|.+..|++=.
T Consensus 536 G~S~F~lSle 545 (822)
T COG0653 536 GSSRFYLSLE 545 (822)
T ss_pred chhhhhhhhH
Confidence 9999888843
|
|
| >cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.5e-15 Score=143.02 Aligned_cols=120 Identities=39% Similarity=0.635 Sum_probs=107.7
Q ss_pred hhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHHHHHHHHHHhhcCCCcEEE
Q psy15524 636 LRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSVKSGVLI 715 (930)
Q Consensus 636 ~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~v~~~F~~~~~~vLv 715 (930)
.|...+...+..... .++++||||++.+.++.+++.|.+. +..+..+||+++..+|..+++.|.++...+|+
T Consensus 12 ~k~~~i~~~i~~~~~-----~~~~~lvf~~~~~~~~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ili 83 (131)
T cd00079 12 EKLEALLELLKEHLK-----KGGKVLIFCPSKKMLDELAELLRKP---GIKVAALHGDGSQEEREEVLKDFREGEIVVLV 83 (131)
T ss_pred HHHHHHHHHHHhccc-----CCCcEEEEeCcHHHHHHHHHHHHhc---CCcEEEEECCCCHHHHHHHHHHHHcCCCcEEE
Confidence 677777777765432 2679999999999999999999873 67788899999999999999999999999999
Q ss_pred eccccccccCCCCccEEEEecCCCChhhHHhhhcccccCCCCceEEEE
Q psy15524 716 CTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLF 763 (930)
Q Consensus 716 ~T~~~~~GlDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~g~~~~~ 763 (930)
||+++++|+|+|++++||.+++|.+..+|.|++||++|.|+.|.++++
T Consensus 84 ~t~~~~~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~~ 131 (131)
T cd00079 84 ATDVIARGIDLPNVSVVINYDLPWSPSSYLQRIGRAGRAGQKGTAILL 131 (131)
T ss_pred EcChhhcCcChhhCCEEEEeCCCCCHHHheecccccccCCCCceEEeC
Confidence 999999999999999999999999999999999999999998887653
|
|
| >PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.6e-13 Score=168.75 Aligned_cols=132 Identities=17% Similarity=0.256 Sum_probs=90.5
Q ss_pred HHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcC-CCceEEEecCCCCHHHHHHHHHHhhcCCCcEEEec
Q psy15524 639 VALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLG-ENIAFFKLHGSMSQSERTEVFKTFRSVKSGVLICT 717 (930)
Q Consensus 639 ~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~-~~~~~~~lhg~~~~~~R~~v~~~F~~~~~~vLv~T 717 (930)
..+...+...+.. .+++++|+++|.+..+.+++.|..... .++.+.. . +++...|..+.+.|++++..||++|
T Consensus 738 ~~la~~i~~l~~~----~~g~~LVLFtSy~~l~~v~~~l~~~~~~~~~~ll~-Q-g~~~~~r~~l~~~F~~~~~~iLlG~ 811 (928)
T PRK08074 738 EEVAAYIAKIAKA----TKGRMLVLFTSYEMLKKTYYNLKNEEELEGYVLLA-Q-GVSSGSRARLTKQFQQFDKAILLGT 811 (928)
T ss_pred HHHHHHHHHHHHh----CCCCEEEEECCHHHHHHHHHHHhhcccccCceEEe-c-CCCCCCHHHHHHHHHhcCCeEEEec
Confidence 4555555544322 267999999999999999999876432 1233332 3 3444568899999999988999999
Q ss_pred cccccccCCCCc--cEEEEecCCC----C--------------------------hhhHHhhhcccccCCCCceEEEEeC
Q psy15524 718 DVAARGLDLPLV--DWIVQYTAPS----S--------------------------STDYVHRVGRTARVGHEGSSLLFLI 765 (930)
Q Consensus 718 ~~~~~GlDip~v--~~VI~~~~p~----s--------------------------~~~y~qr~GRagR~g~~g~~~~~~~ 765 (930)
..+.+|||+|+- ++||....|. + ...+.|-+||.-|...+-.+++++.
T Consensus 812 ~sFwEGVD~pg~~l~~viI~kLPF~~p~dp~~~a~~~~~~~~g~~~F~~~~lP~A~~~lkQg~GRlIRs~~D~G~v~ilD 891 (928)
T PRK08074 812 SSFWEGIDIPGDELSCLVIVRLPFAPPDQPVMEAKSEWAKEQGENPFQELSLPQAVLRFKQGFGRLIRTETDRGTVFVLD 891 (928)
T ss_pred CcccCccccCCCceEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHhhhhhhcccCCceEEEEEec
Confidence 999999999964 6788777553 1 1234788999999887654555555
Q ss_pred cc--cHHHHHHHH
Q psy15524 766 PS--EVKLVEELQ 776 (930)
Q Consensus 766 ~~--e~~~~~~l~ 776 (930)
++ ...|=+.+.
T Consensus 892 ~R~~~k~Yg~~~l 904 (928)
T PRK08074 892 RRLTTTSYGKYFL 904 (928)
T ss_pred CccccchHHHHHH
Confidence 44 333444443
|
|
| >KOG0390|consensus | Back alignment and domain information |
|---|
Probab=99.64 E-value=7.8e-14 Score=159.99 Aligned_cols=343 Identities=19% Similarity=0.206 Sum_probs=205.4
Q ss_pred CCCHHHHHhHHhhhc---C-------CcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHH
Q psy15524 414 QVTTVQQLSIQPILD---G-------GDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTL 483 (930)
Q Consensus 414 ~~~~iQ~~~i~~il~---~-------~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~ 483 (930)
.|+|+|++.+.-+.. | ..+|+.-..|+|||+. .++.+..+++..|...+ --.++|||+|. .|...|.
T Consensus 238 ~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq-~IsflwtlLrq~P~~~~-~~~k~lVV~P~-sLv~nWk 314 (776)
T KOG0390|consen 238 ILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQ-CISFIWTLLRQFPQAKP-LINKPLVVAPS-SLVNNWK 314 (776)
T ss_pred hcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHH-HHHHHHHHHHhCcCccc-cccccEEEccH-HHHHHHH
Confidence 577999999877653 2 2378888899999997 56666666654332111 12678999996 8999999
Q ss_pred HHHHHhhccCCCcceEEEeCCCch--HHHHHHHh-----cCCcEEEECchhHHHhhhccCCcccccceEEEEecchhhhh
Q psy15524 484 EIFTKLCKSFTWIVPSWLTGGEKM--KSEKARIR-----KGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILD 556 (930)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~~gg~~~--~~~~~~~~-----~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~l~~ 556 (930)
++|.++... ..+.+..++|+.+. ......+. ...-|++-+.+.+.++++. +....++++|+||.|++=+
T Consensus 315 kEF~KWl~~-~~i~~l~~~~~~~~~w~~~~sil~~~~~~~~~~vli~sye~~~~~~~~---il~~~~glLVcDEGHrlkN 390 (776)
T KOG0390|consen 315 KEFGKWLGN-HRINPLDFYSTKKSSWIKLKSILFLGYKQFTTPVLIISYETASDYCRK---ILLIRPGLLVCDEGHRLKN 390 (776)
T ss_pred HHHHHhccc-cccceeeeecccchhhhhhHHHHHhhhhheeEEEEeccHHHHHHHHHH---HhcCCCCeEEECCCCCccc
Confidence 999998864 23455556666553 11111111 1244777777777666553 4567899999999998743
Q ss_pred cCcHHHHHHHHHHHhhcCccceEEEEccccCH-HHHH-------------------------------------------
Q psy15524 557 QGYERDIAEFLEILKKQKPQFQSILLSATLTP-AVQR------------------------------------------- 592 (930)
Q Consensus 557 ~g~~~~l~~i~~~l~~~~~~~q~vl~SAT~~~-~~~~------------------------------------------- 592 (930)
.. ..+...|.+.. ..+.|++|.|+-. ++.+
T Consensus 391 ~~-----s~~~kaL~~l~-t~rRVLLSGTp~QNdl~EyFnlL~fvrP~~Lgs~~sf~k~~~~~i~~~~~~~~s~e~~~~~ 464 (776)
T KOG0390|consen 391 SD-----SLTLKALSSLK-TPRRVLLTGTPIQNDLKEYFNLLDFVRPGFLGSISSFKKKFEIPILRGRDADASEEDRERE 464 (776)
T ss_pred hh-----hHHHHHHHhcC-CCceEEeeCCcccccHHHHHHHHhhcChhhccchHHHHHHhhcccccccCCCcchhhhhhH
Confidence 32 33334444333 3455788888521 1111
Q ss_pred -----H---HhhhcCC----------C---EEEEccCCC-----------Cc--cc------------------------
Q psy15524 593 -----L---AGMTLQN----------P---IQIDAADST-----------DI--HN------------------------ 614 (930)
Q Consensus 593 -----l---~~~~~~~----------~---~~i~~~~~~-----------~~--~~------------------------ 614 (930)
| ...++.. | .++-+.... .. ..
T Consensus 465 ~rl~eL~~~t~~fi~rrt~~il~k~LP~k~e~vv~~n~t~~Q~~~~~~l~~~~~~~~~~~~~l~~~~~L~k~cnhP~L~~ 544 (776)
T KOG0390|consen 465 ERLQELRELTNKFILRRTGDILLKYLPGKYEYVVFCNPTPIQKELYKKLLDSMKMRTLKGYALELITKLKKLCNHPSLLL 544 (776)
T ss_pred HHHHHHHHHHHhheeecccchhhhhCCCceeEEEEeCCcHHHHHHHHHHHHHHHhhhhhcchhhHHHHHHHHhcCHHhhc
Confidence 1 1111000 0 000000000 00 00
Q ss_pred ------------CccceecCCCceEEEEEcCchhhHHHHHHHHHhhccCCCcCCCceEEEEecc---hhhHHHHHHHHhh
Q psy15524 615 ------------TTDSLVIPDSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMAT---QDMADYHTELLST 679 (930)
Q Consensus 615 ------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s---~~~~~~~~~~l~~ 679 (930)
.......+...+..........++..|..++... ..++++|+.- ......+.+.+.+
T Consensus 545 ~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ks~kl~~L~~ll~~~--------~ek~~~~~v~Isny~~tldl~e~~~~ 616 (776)
T KOG0390|consen 545 LCEKTEKEKAFKNPALLLDPGKLKLDAGDGSKSGKLLVLVFLLEVI--------REKLLVKSVLISNYTQTLDLFEQLCR 616 (776)
T ss_pred ccccccccccccChHhhhcccccccccccchhhhHHHHHHHHHHHH--------hhhcceEEEEeccHHHHHHHHHHHHh
Confidence 0000000111111111112234555555554322 3344444433 3333333344443
Q ss_pred hcCCCceEEEecCCCCHHHHHHHHHHhhcCCCc---EEEeccccccccCCCCccEEEEecCCCChhhHHhhhcccccCCC
Q psy15524 680 VLGENIAFFKLHGSMSQSERTEVFKTFRSVKSG---VLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGH 756 (930)
Q Consensus 680 ~~~~~~~~~~lhg~~~~~~R~~v~~~F~~~~~~---vLv~T~~~~~GlDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~ 756 (930)
. .|..++.+||.|+..+|..+++.|.+.... .|.+|-+.+.||++-+.+.||.+|++++|+.-.|.++|+-|.|+
T Consensus 617 ~--~g~~~~rLdG~~~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRlil~D~dWNPa~d~QAmaR~~RdGQ 694 (776)
T KOG0390|consen 617 W--RGYEVLRLDGKTSIKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLILFDPDWNPAVDQQAMARAWRDGQ 694 (776)
T ss_pred h--cCceEEEEcCCCchHHHHHHHHhccCCCCCceEEEEecccccCceeecccceEEEeCCCCCchhHHHHHHHhccCCC
Confidence 3 388999999999999999999999865433 57788999999999999999999999999999999999999999
Q ss_pred CceEEEE--eC---cccHHHHHHHHhcC
Q psy15524 757 EGSSLLF--LI---PSEVKLVEELQNRR 779 (930)
Q Consensus 757 ~g~~~~~--~~---~~e~~~~~~l~~~~ 779 (930)
.-.|+++ ++ .+|..|-+...+.+
T Consensus 695 Kk~v~iYrLlatGtiEEk~~qrq~~K~~ 722 (776)
T KOG0390|consen 695 KKPVYIYRLLATGTIEEKIYQRQTHKEG 722 (776)
T ss_pred cceEEEEEeecCCCchHHHHHHHHHhhh
Confidence 8776654 43 34444555555444
|
|
| >PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins | Back alignment and domain information |
|---|
Probab=99.63 E-value=6.6e-16 Score=130.56 Aligned_cols=72 Identities=42% Similarity=0.746 Sum_probs=70.6
Q ss_pred CceEEEecCCCCHHHHHHHHHHhhcCCCcEEEeccccccccCCCCccEEEEecCCCChhhHHhhhcccccCC
Q psy15524 684 NIAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVG 755 (930)
Q Consensus 684 ~~~~~~lhg~~~~~~R~~v~~~F~~~~~~vLv~T~~~~~GlDip~v~~VI~~~~p~s~~~y~qr~GRagR~g 755 (930)
++.+..+||++++.+|..+++.|.++...|||||+++++|+|+|++++||++++|.++.+|.|++||++|.|
T Consensus 7 ~~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~g 78 (78)
T PF00271_consen 7 GIKVAIIHGDMSQKERQEILKKFNSGEIRVLIATDILGEGIDLPDASHVIFYDPPWSPEEYIQRIGRAGRIG 78 (78)
T ss_dssp TSSEEEESTTSHHHHHHHHHHHHHTTSSSEEEESCGGTTSSTSTTESEEEESSSESSHHHHHHHHTTSSTTT
T ss_pred CCcEEEEECCCCHHHHHHHHHHhhccCceEEEeeccccccccccccccccccccCCCHHHHHHHhhcCCCCC
Confidence 788999999999999999999999999999999999999999999999999999999999999999999986
|
It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B .... |
| >TIGR00603 rad25 DNA repair helicase rad25 | Back alignment and domain information |
|---|
Probab=99.63 E-value=7.3e-15 Score=170.09 Aligned_cols=151 Identities=17% Similarity=0.163 Sum_probs=105.9
Q ss_pred cCcHHHHHHHHHhhc-C--CcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHHh
Q psy15524 5 QVTTVQQLSIQPILD-G--GDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLC 81 (930)
Q Consensus 5 ~l~~~Q~~ai~~~~~-g--~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~ 81 (930)
.|+|+|++|+..+.. | ++.++++|||+|||++.+..+.. + +.++|||||+.+|+.|+.++|.+++
T Consensus 255 ~LRpYQ~eAl~~~~~~gr~r~GIIvLPtGaGKTlvai~aa~~-l-----------~k~tLILvps~~Lv~QW~~ef~~~~ 322 (732)
T TIGR00603 255 QIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVTAACT-V-----------KKSCLVLCTSAVSVEQWKQQFKMWS 322 (732)
T ss_pred CcCHHHHHHHHHHHhcCCCCCcEEEeCCCCChHHHHHHHHHH-h-----------CCCEEEEeCcHHHHHHHHHHHHHhc
Confidence 589999999999873 4 37899999999999998765543 2 1239999999999999999999986
Q ss_pred hhcCCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcC-------CCccCCCccEEEEcccccccccCcHHHH
Q psy15524 82 KSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHT-------ETLKFSKVEHLVLDEADRILDQGYERDI 154 (930)
Q Consensus 82 ~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~-------~~~~l~~l~~vViDE~h~~~~~~~~~~~ 154 (930)
.. ....+..++|+.... .....+|+|+|+..+.....+. ..+.-...++||+||||++... .+
T Consensus 323 ~l-~~~~I~~~tg~~k~~-----~~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~lpA~----~f 392 (732)
T TIGR00603 323 TI-DDSQICRFTSDAKER-----FHGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHVVPAA----MF 392 (732)
T ss_pred CC-CCceEEEEecCcccc-----cccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEccccccHH----HH
Confidence 42 224455566553221 1234689999998775432211 1122356889999999998643 34
Q ss_pred HHHHHHHhhcCCCceEEEEEeecCCCc
Q psy15524 155 AEFLEILKKQKPQFQSILLSATLTPAT 181 (930)
Q Consensus 155 ~~i~~~l~~~~~~~~~i~lSAT~~~~~ 181 (930)
..++..+.. ...+||||||....
T Consensus 393 r~il~~l~a----~~RLGLTATP~ReD 415 (732)
T TIGR00603 393 RRVLTIVQA----HCKLGLTATLVRED 415 (732)
T ss_pred HHHHHhcCc----CcEEEEeecCcccC
Confidence 445554433 25899999997543
|
All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4 | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.4e-13 Score=158.26 Aligned_cols=106 Identities=17% Similarity=0.162 Sum_probs=75.4
Q ss_pred CceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHHHHHHHHHHhhcC----CCcEEEeccccccccCC------
Q psy15524 657 ESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSV----KSGVLICTDVAARGLDL------ 726 (930)
Q Consensus 657 ~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~v~~~F~~~----~~~vLv~T~~~~~GlDi------ 726 (930)
+++++|.|.|....+.+++.+...+. ..++ ..|..+ .|...+++|++. ...||++|+.+.+|||+
T Consensus 470 ~G~~lvLfTS~~~~~~~~~~l~~~l~--~~~l-~qg~~~--~~~~l~~~f~~~~~~~~~~vL~gt~sfweGvDv~~~~~~ 544 (636)
T TIGR03117 470 QGGTLVLTTAFSHISAIGQLVELGIP--AEIV-IQSEKN--RLASAEQQFLALYANGIQPVLIAAGGAWTGIDLTHKPVS 544 (636)
T ss_pred CCCEEEEechHHHHHHHHHHHHhhcC--CCEE-EeCCCc--cHHHHHHHHHHhhcCCCCcEEEeCCccccccccCCccCC
Confidence 67999999999999999999976442 3333 356442 456788999874 68899999999999999
Q ss_pred --C--CccEEEEecCCCCh-------------------------hhHHhhhcccccCCCC--ceEEEEeCcc
Q psy15524 727 --P--LVDWIVQYTAPSSS-------------------------TDYVHRVGRTARVGHE--GSSLLFLIPS 767 (930)
Q Consensus 727 --p--~v~~VI~~~~p~s~-------------------------~~y~qr~GRagR~g~~--g~~~~~~~~~ 767 (930)
| .++.||....|..+ ..+.|-+||.-|...+ -..+.++.+.
T Consensus 545 p~~G~~Ls~ViI~kLPF~~~dp~a~~~~~~~~g~~~f~~~p~a~i~lkQg~GRLIR~~~D~~~G~i~ilD~R 616 (636)
T TIGR03117 545 PDKDNLLTDLIITCAPFGLNRSLSMLKRIRKTSVRPWEIINESLMMLRQGLGRLVRHPDMPQNRRIHMLDGR 616 (636)
T ss_pred CCCCCcccEEEEEeCCCCcCChHHHHHHHHhcCCChHhhhHHHHHHHHHhcCceeecCCCcCceEEEEEeCC
Confidence 2 47788887766321 2345777887777665 3344444443
|
Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome. |
| >PRK13104 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.62 E-value=8.5e-15 Score=170.59 Aligned_cols=127 Identities=17% Similarity=0.204 Sum_probs=100.0
Q ss_pred CcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHHhhhcC
Q psy15524 6 VTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFT 85 (930)
Q Consensus 6 l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~ 85 (930)
+++.|--.--.+ ...-++.++||+|||++|.+|++..... |..++|++||++||.|.++.+..+...++
T Consensus 83 ~ydvQliGg~~L--h~G~Iaem~TGeGKTL~a~Lpa~~~al~---------G~~V~VvTpn~yLA~qd~e~m~~l~~~lG 151 (896)
T PRK13104 83 HFDVQLIGGMVL--HEGNIAEMRTGEGKTLVATLPAYLNAIS---------GRGVHIVTVNDYLAKRDSQWMKPIYEFLG 151 (896)
T ss_pred cchHHHhhhhhh--ccCccccccCCCCchHHHHHHHHHHHhc---------CCCEEEEcCCHHHHHHHHHHHHHHhcccC
Confidence 455554433333 3445899999999999999999977654 33499999999999999999999998777
Q ss_pred CceeEEeeCCCchHHHHHHhcCCCcEEEEChHHH-HHHHhcCCCccC-----CCccEEEEccccccc
Q psy15524 86 WIVPSWLTGGEKMKSEKARIRKGISILVATPGRL-LDHCKHTETLKF-----SKVEHLVLDEADRIL 146 (930)
Q Consensus 86 ~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l-~~~l~~~~~~~l-----~~l~~vViDE~h~~~ 146 (930)
+.++++.|+.......... .+||+||||++| .+++...-.+.+ +.+.++||||||.|+
T Consensus 152 -Ltv~~i~gg~~~~~r~~~y--~~dIvygT~grlgfDyLrd~~~~~~~~~v~r~l~~~IvDEaDsiL 215 (896)
T PRK13104 152 -LTVGVIYPDMSHKEKQEAY--KADIVYGTNNEYGFDYLRDNMAFSLTDKVQRELNFAIVDEVDSIL 215 (896)
T ss_pred -ceEEEEeCCCCHHHHHHHh--CCCEEEECChhhhHHHHhcCCccchHhhhccccceEEeccHhhhh
Confidence 8888899987766554433 589999999999 888876423333 689999999999875
|
|
| >COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.1e-15 Score=170.38 Aligned_cols=146 Identities=23% Similarity=0.260 Sum_probs=104.5
Q ss_pred cCcHHHHHHHHHhhc----CCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHH
Q psy15524 5 QVTTVQQLSIQPILD----GGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKL 80 (930)
Q Consensus 5 ~l~~~Q~~ai~~~~~----g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~ 80 (930)
.|+++|++|+.++.+ ++..++++|||+|||.+++..+.... ..+|||+|+.+|+.|+.+.+...
T Consensus 36 ~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~~~~------------~~~Lvlv~~~~L~~Qw~~~~~~~ 103 (442)
T COG1061 36 ELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAELK------------RSTLVLVPTKELLDQWAEALKKF 103 (442)
T ss_pred CCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHHHhc------------CCEEEEECcHHHHHHHHHHHHHh
Confidence 589999999999988 88999999999999999887775432 22999999999999999887777
Q ss_pred hhhcCCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCcHHHHHHHHHH
Q psy15524 81 CKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEI 160 (930)
Q Consensus 81 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~~~~~~~i~~~ 160 (930)
.... ...+.+.|+.... . . ..|.|+|...+.... ....+..++.++||+||||++....+. .+...
T Consensus 104 ~~~~--~~~g~~~~~~~~~-~-----~-~~i~vat~qtl~~~~-~l~~~~~~~~~liI~DE~Hh~~a~~~~----~~~~~ 169 (442)
T COG1061 104 LLLN--DEIGIYGGGEKEL-E-----P-AKVTVATVQTLARRQ-LLDEFLGNEFGLIIFDEVHHLPAPSYR----RILEL 169 (442)
T ss_pred cCCc--cccceecCceecc-C-----C-CcEEEEEhHHHhhhh-hhhhhcccccCEEEEEccccCCcHHHH----HHHHh
Confidence 5421 1334444443211 0 1 369999998886642 112233457999999999999876653 33333
Q ss_pred HhhcCCCceEEEEEeecCC
Q psy15524 161 LKKQKPQFQSILLSATLTP 179 (930)
Q Consensus 161 l~~~~~~~~~i~lSAT~~~ 179 (930)
+....+ ++||||||..
T Consensus 170 ~~~~~~---~LGLTATp~R 185 (442)
T COG1061 170 LSAAYP---RLGLTATPER 185 (442)
T ss_pred hhcccc---eeeeccCcee
Confidence 332221 8999999874
|
|
| >PF13959 DUF4217: Domain of unknown function (DUF4217) | Back alignment and domain information |
|---|
Probab=99.62 E-value=7.9e-16 Score=122.00 Aligned_cols=62 Identities=47% Similarity=0.725 Sum_probs=60.0
Q ss_pred HHHHHHHHHHhcHHHHHHHhhhhHHHHHHhhhcccccccccccccCChHHHHHhcCCCCCCcc
Q psy15524 818 LQMSFESAVLQQKILHTSACKGYTSWVRFYASYSKDLRHIFNFKQIHLGHFAKSFALRDAPSV 880 (930)
Q Consensus 818 ~~~~~~~~~~~~~~~~~~a~~a~~s~~~~y~~~~~~~~~~f~~~~l~~~~~a~sf~l~~~p~~ 880 (930)
+|..+++++.+|+++.++|++||+||+|+|.+| ++++.||++++||++|+|+||||.++|++
T Consensus 2 iq~~l~~~~~~d~~l~~lA~~Af~SyvraY~~~-~~~k~iF~~~~L~l~~~A~sfGL~~~P~v 63 (65)
T PF13959_consen 2 IQQKLEKLVAKDRELKELAQKAFVSYVRAYASH-KELKDIFNVKKLDLGHLAKSFGLLEAPKV 63 (65)
T ss_pred HHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHH-hhhhhhCCcccCCHHHHHHHcCCCCCCCC
Confidence 688999999999999999999999999999999 78999999999999999999999999986
|
|
| >PRK09694 helicase Cas3; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=3.3e-14 Score=169.61 Aligned_cols=166 Identities=22% Similarity=0.130 Sum_probs=110.1
Q ss_pred ccCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHHhhh
Q psy15524 4 TQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKS 83 (930)
Q Consensus 4 ~~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~ 83 (930)
.+|+|+|+.+......+..+++.||||+|||.+++..+...+.. ....+++|..||+++++|+++++.++...
T Consensus 285 ~~p~p~Q~~~~~~~~~pgl~ileApTGsGKTEAAL~~A~~l~~~-------~~~~gi~~aLPT~Atan~m~~Rl~~~~~~ 357 (878)
T PRK09694 285 YQPRQLQTLVDALPLQPGLTIIEAPTGSGKTEAALAYAWRLIDQ-------GLADSIIFALPTQATANAMLSRLEALASK 357 (878)
T ss_pred CCChHHHHHHHhhccCCCeEEEEeCCCCCHHHHHHHHHHHHHHh-------CCCCeEEEECcHHHHHHHHHHHHHHHHHH
Confidence 37999999886544445679999999999999988776644432 22346999999999999999999876543
Q ss_pred c-CCceeEEeeCCCchHHH---------------------HHHhc---CC---CcEEEEChHHHHHHHhcCCCccCCCc-
Q psy15524 84 F-TWIVPSWLTGGEKMKSE---------------------KARIR---KG---ISILVATPGRLLDHCKHTETLKFSKV- 134 (930)
Q Consensus 84 ~-~~~~~~~~~g~~~~~~~---------------------~~~l~---~~---~~Ilv~Tp~~l~~~l~~~~~~~l~~l- 134 (930)
. +...+.+..|....... ...+. +. .+|+|||+.+++......+...++.+
T Consensus 358 ~f~~~~v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL~a~l~~kh~~lR~~~ 437 (878)
T PRK09694 358 LFPSPNLILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVLISVLPVKHRFIRGFG 437 (878)
T ss_pred hcCCCceEeecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHHHHHHccchHHHHHHh
Confidence 2 22334444444321100 01121 11 58999999998865544332233333
Q ss_pred ---cEEEEcccccccccCcHHHHHHHHHHHhhcCCCceEEEEEeecCC
Q psy15524 135 ---EHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTP 179 (930)
Q Consensus 135 ---~~vViDE~h~~~~~~~~~~~~~i~~~l~~~~~~~~~i~lSAT~~~ 179 (930)
++|||||+|.+ +......+..+++.+... ..++|+||||++.
T Consensus 438 La~svvIiDEVHAy-D~ym~~lL~~~L~~l~~~--g~~vIllSATLP~ 482 (878)
T PRK09694 438 LGRSVLIVDEVHAY-DAYMYGLLEAVLKAQAQA--GGSVILLSATLPA 482 (878)
T ss_pred hccCeEEEechhhC-CHHHHHHHHHHHHHHHhc--CCcEEEEeCCCCH
Confidence 48999999987 333334556666665443 3579999999975
|
|
| >COG1110 Reverse gyrase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.60 E-value=5.5e-14 Score=160.94 Aligned_cols=264 Identities=19% Similarity=0.224 Sum_probs=167.9
Q ss_pred CCccCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHHh
Q psy15524 2 NITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLC 81 (930)
Q Consensus 2 g~~~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~ 81 (930)
|+ .|+..|+.+...+..|++.-+.||||.|||.--++..+.... .|.++++++||..|+.|.+++++++.
T Consensus 80 G~-~~ws~QR~WakR~~rg~SFaiiAPTGvGKTTfg~~~sl~~a~---------kgkr~yii~PT~~Lv~Q~~~kl~~~~ 149 (1187)
T COG1110 80 GF-RPWSAQRVWAKRLVRGKSFAIIAPTGVGKTTFGLLMSLYLAK---------KGKRVYIIVPTTTLVRQVYERLKKFA 149 (1187)
T ss_pred CC-CchHHHHHHHHHHHcCCceEEEcCCCCchhHHHHHHHHHHHh---------cCCeEEEEecCHHHHHHHHHHHHHHH
Confidence 66 699999999999999999999999999999855554443322 25679999999999999999999998
Q ss_pred hhcCCceeEE-eeCCCchH---HHHHHhc-CCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCcHHHHHH
Q psy15524 82 KSFTWIVPSW-LTGGEKMK---SEKARIR-KGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAE 156 (930)
Q Consensus 82 ~~~~~~~~~~-~~g~~~~~---~~~~~l~-~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~~~~~~~ 156 (930)
...+...+.. +.+.-..+ .....+. ++.||+|+|..-|....... .--+++++++|.+|.++..+. .+.+
T Consensus 150 e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e~L---~~~kFdfifVDDVDA~Lkask--NvDr 224 (1187)
T COG1110 150 EDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQFLSKRFEEL---SKLKFDFIFVDDVDAILKASK--NVDR 224 (1187)
T ss_pred hhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhHHHh---cccCCCEEEEccHHHHHhccc--cHHH
Confidence 7766333333 33332222 2233344 46999999998887776541 124799999999999988762 3344
Q ss_pred HHHHHhhcCCCceEEEEEeecCCCccccccccccccccccchhhhhhhhhh-------hccchhhHHHHHHHH-----hh
Q psy15524 157 FLEILKKQKPQFQSILLSATLTPATCWCKHTETLKFSKVEHLVLDEADRIL-------DQGYERDIAEFLEIL-----KK 224 (930)
Q Consensus 157 i~~~l~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~de~~~~~-------~~~~~~~~~~~~~~~-----~~ 224 (930)
++..+. | ...+++.+.++. ......++++.++.. ..
T Consensus 225 iL~LlG----------f----------------------~eE~i~~a~~~~~lr~~~~~~~~~~~~~e~~~~~e~~~~~~ 272 (1187)
T COG1110 225 LLRLLG----------F----------------------SEEVIESAYELIKLRRKLYGEKRAERVREELREVEREREKK 272 (1187)
T ss_pred HHHHcC----------C----------------------CHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHh
Confidence 443331 1 111222222211 111112233332222 22
Q ss_pred cCcCceEEEEecccchHHHHhhhccccCCeeeccCCcccccCCCcccccCCCceeEEEEcCcchhHHHHHHHHhhhcccc
Q psy15524 225 QKPQFQSVLLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALASFILGKCQNV 304 (930)
Q Consensus 225 ~~~~~q~~~~sat~~~~~~~l~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~ 304 (930)
..+..+.++.|||..+.-.++ .+++.-..+++.... ....||...|...+...|...++..+
T Consensus 273 r~k~g~LvvsSATg~~rg~R~--~LfReLlgFevG~~~---------~~LRNIvD~y~~~~~~e~~~elvk~l------- 334 (1187)
T COG1110 273 RRKLGILVVSSATGKPRGSRL--KLFRELLGFEVGSGG---------EGLRNIVDIYVESESLEKVVELVKKL------- 334 (1187)
T ss_pred ccCCceEEEeeccCCCCCchH--HHHHHHhCCccCccc---------hhhhheeeeeccCccHHHHHHHHHHh-------
Confidence 333458999999987653211 122333334333332 22456666666555555666555555
Q ss_pred ccCCcceEEEEEec---ccchhhhHHHHhhhhh
Q psy15524 305 NEDEESKMLVFMAT---QDMADYHTELLSTKKK 334 (930)
Q Consensus 305 ~~~~~~~~iVF~~s---~~~~~~l~~~L~~~~~ 334 (930)
+...|||++. ++.++++++.|+++|-
T Consensus 335 ----G~GgLIfV~~d~G~e~aeel~e~Lr~~Gi 363 (1187)
T COG1110 335 ----GDGGLIFVPIDYGREKAEELAEYLRSHGI 363 (1187)
T ss_pred ----CCCeEEEEEcHHhHHHHHHHHHHHHhcCc
Confidence 4578999999 9999999999999873
|
|
| >COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] | Back alignment and domain information |
|---|
Probab=99.58 E-value=3e-14 Score=159.01 Aligned_cols=170 Identities=25% Similarity=0.340 Sum_probs=135.5
Q ss_pred CCccCcHHHHHHHHHhhcC------CcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHH
Q psy15524 2 NITQVTTVQQLSIQPILDG------GDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLE 75 (930)
Q Consensus 2 g~~~l~~~Q~~ai~~~~~g------~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~ 75 (930)
.| .||..|+.++..|..+ .+-|+++.-|||||++++++++..+.. |.++.+++||--||.|-++
T Consensus 260 PF-~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~~---------G~Q~ALMAPTEILA~QH~~ 329 (677)
T COG1200 260 PF-KLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIEA---------GYQAALMAPTEILAEQHYE 329 (677)
T ss_pred CC-CccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHHHc---------CCeeEEeccHHHHHHHHHH
Confidence 45 5999999999999865 468999999999999999999998854 8899999999999999999
Q ss_pred HHHHHhhhcCCceeEEeeCCCchHHHHH---HhcC-CCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCcH
Q psy15524 76 IFTKLCKSFTWIVPSWLTGGEKMKSEKA---RIRK-GISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYE 151 (930)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~l~~-~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~~ 151 (930)
.+.+++..++ +.+..+.|......... .+.. ..+|+|||-.- .. ..+.++++.++|+||-|++.=.+
T Consensus 330 ~~~~~l~~~~-i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHAL-----iQ-d~V~F~~LgLVIiDEQHRFGV~Q-- 400 (677)
T COG1200 330 SLRKWLEPLG-IRVALLTGSLKGKARKEILEQLASGEIDIVVGTHAL-----IQ-DKVEFHNLGLVIIDEQHRFGVHQ-- 400 (677)
T ss_pred HHHHHhhhcC-CeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchh-----hh-cceeecceeEEEEeccccccHHH--
Confidence 9999999887 88899998876554433 3344 49999999533 22 55678999999999999864222
Q ss_pred HHHHHHHHHHhhcCC-CceEEEEEeecCCCcccccccccccccccc
Q psy15524 152 RDIAEFLEILKKQKP-QFQSILLSATLTPATCWCKHTETLKFSKVE 196 (930)
Q Consensus 152 ~~~~~i~~~l~~~~~-~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~ 196 (930)
+ ..|...+. .+.++.|||||-|++..+..++.++.|.++
T Consensus 401 ---R---~~L~~KG~~~Ph~LvMTATPIPRTLAlt~fgDldvS~Id 440 (677)
T COG1200 401 ---R---LALREKGEQNPHVLVMTATPIPRTLALTAFGDLDVSIID 440 (677)
T ss_pred ---H---HHHHHhCCCCCcEEEEeCCCchHHHHHHHhccccchhhc
Confidence 2 23445555 689999999999988777776666655554
|
|
| >KOG0387|consensus | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.6e-13 Score=153.01 Aligned_cols=338 Identities=17% Similarity=0.242 Sum_probs=208.6
Q ss_pred CCCHHHHHhHHhhhc----CCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHHHHh
Q psy15524 414 QVTTVQQLSIQPILD----GGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKL 489 (930)
Q Consensus 414 ~~~~iQ~~~i~~il~----~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~ 489 (930)
.+.++|+..+..+.+ +..-|+.-..|-|||.. .+..|..+.... + --..+|||||. .+..||..+|..+
T Consensus 205 ~Lf~yQreGV~WL~~L~~q~~GGILgDeMGLGKTIQ-iisFLaaL~~S~-k----~~~paLIVCP~-Tii~qW~~E~~~w 277 (923)
T KOG0387|consen 205 KLFPYQREGVQWLWELYCQRAGGILGDEMGLGKTIQ-IISFLAALHHSG-K----LTKPALIVCPA-TIIHQWMKEFQTW 277 (923)
T ss_pred HhhHHHHHHHHHHHHHHhccCCCeecccccCccchh-HHHHHHHHhhcc-c----ccCceEEEccH-HHHHHHHHHHHHh
Confidence 566889999887763 45688999999999985 333333333311 1 12559999997 7889999999988
Q ss_pred hccCCCcceEEEeCCCch--------HHHHHH-H----hcCCcEEEECchhHHHhhhccCCcccccceEEEEecchhhhh
Q psy15524 490 CKSFTWIVPSWLTGGEKM--------KSEKAR-I----RKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILD 556 (930)
Q Consensus 490 ~~~~~~~~~~~~~gg~~~--------~~~~~~-~----~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~l~~ 556 (930)
+..+ .+..+.|-... ...+.. + ..+..|+|+|...+.-+- ..+.-..++++|+||.|+|-+
T Consensus 278 ~p~~---rv~ilh~t~s~~r~~~~~~~~~~~~~L~r~~~~~~~ilitty~~~r~~~---d~l~~~~W~y~ILDEGH~IrN 351 (923)
T KOG0387|consen 278 WPPF---RVFILHGTGSGARYDASHSSHKKDKLLIRKVATDGGILITTYDGFRIQG---DDLLGILWDYVILDEGHRIRN 351 (923)
T ss_pred Ccce---EEEEEecCCcccccccchhhhhhhhhheeeecccCcEEEEehhhhcccC---cccccccccEEEecCcccccC
Confidence 7544 23333332220 001111 1 124679999987653221 223334588999999999865
Q ss_pred cCcHHHHHHHHHHHhhcCccceEEEEccccC-HHHHHHHhhh-----------------cCCCEEEEccCC---------
Q psy15524 557 QGYERDIAEFLEILKKQKPQFQSILLSATLT-PAVQRLAGMT-----------------LQNPIQIDAADS--------- 609 (930)
Q Consensus 557 ~g~~~~l~~i~~~l~~~~~~~q~vl~SAT~~-~~~~~l~~~~-----------------~~~~~~i~~~~~--------- 609 (930)
..-. +...+..++ ..+.+.+|.|+- +.+.++-..+ +..|+.+..+..
T Consensus 352 pns~--islackki~----T~~RiILSGTPiQNnL~ELwsLfDFv~PG~Lgt~~~F~~~f~~pI~~GgyaNAs~~qv~~a 425 (923)
T KOG0387|consen 352 PNSK--ISLACKKIR----TVHRIILSGTPIQNNLTELWSLFDFVFPGKLGTLPVFQQNFEHPINRGGYANASPRQVQTA 425 (923)
T ss_pred CccH--HHHHHHhcc----ccceEEeeCccccchHHHHHHHhhhccCCcccchHHHHhhhhhheeccccCCCCHHHHHHH
Confidence 5422 222222222 344566676642 1111111000 000110000000
Q ss_pred --------------------------------------------------------------CC---------cccCccc
Q psy15524 610 --------------------------------------------------------------TD---------IHNTTDS 618 (930)
Q Consensus 610 --------------------------------------------------------------~~---------~~~~~~~ 618 (930)
.. ....+..
T Consensus 426 ykca~~Lr~lI~PylLRR~K~dv~~~~Lp~K~E~VlfC~LT~~QR~~Y~~fl~s~~v~~i~ng~~~~l~Gi~iLrkICnH 505 (923)
T KOG0387|consen 426 YKCAVALRDLISPYLLRRMKSDVKGLKLPKKEEIVLFCRLTKLQRRLYQRFLNSSEVNKILNGKRNCLSGIDILRKICNH 505 (923)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHhhhccCCCccceEEEEeccHHHHHHHHHHhhhHHHHHHHcCCccceechHHHHhhcCC
Confidence 00 0000000
Q ss_pred eec--C--CCceEE--E-EEcCchhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCCceEEEec
Q psy15524 619 LVI--P--DSLKQH--F-IVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLH 691 (930)
Q Consensus 619 ~~~--~--~~~~~~--~-~~~~~~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lh 691 (930)
+.. + +...+. | -......|+..+..++...... +.++++|..++.+.+.+...|... +++.+..+.
T Consensus 506 Pdll~~~~~~~~~~~D~~g~~k~sGKm~vl~~ll~~W~kq-----g~rvllFsqs~~mLdilE~fL~~~--~~ysylRmD 578 (923)
T KOG0387|consen 506 PDLLDRRDEDEKQGPDYEGDPKRSGKMKVLAKLLKDWKKQ-----GDRVLLFSQSRQMLDILESFLRRA--KGYSYLRMD 578 (923)
T ss_pred cccccCcccccccCCCcCCChhhcchHHHHHHHHHHHhhC-----CCEEEEehhHHHHHHHHHHHHHhc--CCceEEEec
Confidence 000 0 001111 1 1122345777788887765443 679999999999999998888852 589999999
Q ss_pred CCCCHHHHHHHHHHhhcCCCc--EEEeccccccccCCCCccEEEEecCCCChhhHHhhhcccccCCCCceEEE--EeCc-
Q psy15524 692 GSMSQSERTEVFKTFRSVKSG--VLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLL--FLIP- 766 (930)
Q Consensus 692 g~~~~~~R~~v~~~F~~~~~~--vLv~T~~~~~GlDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~g~~~~--~~~~- 766 (930)
|..+...|....++|.++..- .|++|.+.+-|+|+.+.+-||.||+.++|.+-.|-.-||-|.|+.-.+++ +++.
T Consensus 579 GtT~~~~R~~lVd~Fne~~s~~VFLLTTrvGGLGlNLTgAnRVIIfDPdWNPStD~QAreRawRiGQkkdV~VYRL~t~g 658 (923)
T KOG0387|consen 579 GTTPAALRQKLVDRFNEDESIFVFLLTTRVGGLGLNLTGANRVIIFDPDWNPSTDNQARERAWRIGQKKDVVVYRLMTAG 658 (923)
T ss_pred CCCccchhhHHHHhhcCCCceEEEEEEecccccccccccCceEEEECCCCCCccchHHHHHHHhhcCccceEEEEEecCC
Confidence 999999999999999988653 68999999999999999999999999999999999999999999655443 3443
Q ss_pred --ccHHHHHHHHh
Q psy15524 767 --SEVKLVEELQN 777 (930)
Q Consensus 767 --~e~~~~~~l~~ 777 (930)
+|.-|-+.+.+
T Consensus 659 TIEEkiY~rQI~K 671 (923)
T KOG0387|consen 659 TIEEKIYHRQIFK 671 (923)
T ss_pred cHHHHHHHHHHHH
Confidence 34445444443
|
|
| >TIGR00595 priA primosomal protein N' | Back alignment and domain information |
|---|
Probab=99.56 E-value=7.3e-15 Score=167.90 Aligned_cols=140 Identities=21% Similarity=0.218 Sum_probs=97.8
Q ss_pred EEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHHhhhcCCceeEEeeCCCchHH---
Q psy15524 24 LVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKS--- 100 (930)
Q Consensus 24 lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~--- 100 (930)
|++||||||||++|+..+...+.. |.++||++|+++|+.|+++++++.+. ..+..++++....+
T Consensus 1 LL~g~TGsGKT~v~l~~i~~~l~~---------g~~vLvlvP~i~L~~Q~~~~l~~~f~----~~v~vlhs~~~~~er~~ 67 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQAIEKVLAL---------GKSVLVLVPEIALTPQMIQRFKYRFG----SQVAVLHSGLSDSEKLQ 67 (505)
T ss_pred CccCCCCCCHHHHHHHHHHHHHHc---------CCeEEEEeCcHHHHHHHHHHHHHHhC----CcEEEEECCCCHHHHHH
Confidence 578999999999998776655533 55799999999999999999998753 33455666554332
Q ss_pred -HHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCc---HHHHHHHHHHHhhcCCCceEEEEEee
Q psy15524 101 -EKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGY---ERDIAEFLEILKKQKPQFQSILLSAT 176 (930)
Q Consensus 101 -~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~---~~~~~~i~~~l~~~~~~~~~i~lSAT 176 (930)
+.....+.++|+|||+..+. ..+.++++|||||+|....++. ....+.+ ..++....+++++++|||
T Consensus 68 ~~~~~~~g~~~IVVGTrsalf--------~p~~~l~lIIVDEeh~~sykq~~~p~y~ar~~-a~~ra~~~~~~vil~SAT 138 (505)
T TIGR00595 68 AWRKVKNGEILVVIGTRSALF--------LPFKNLGLIIVDEEHDSSYKQEEGPRYHARDV-AVYRAKKFNCPVVLGSAT 138 (505)
T ss_pred HHHHHHcCCCCEEECChHHHc--------CcccCCCEEEEECCCccccccccCCCCcHHHH-HHHHHHhcCCCEEEEeCC
Confidence 22333445899999987652 3478899999999998765431 1111222 222333457899999999
Q ss_pred cCCCccccc
Q psy15524 177 LTPATCWCK 185 (930)
Q Consensus 177 ~~~~~~~~~ 185 (930)
|+.++....
T Consensus 139 Psles~~~~ 147 (505)
T TIGR00595 139 PSLESYHNA 147 (505)
T ss_pred CCHHHHHHH
Confidence 987665543
|
All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3 | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.4e-14 Score=143.72 Aligned_cols=154 Identities=21% Similarity=0.230 Sum_probs=103.7
Q ss_pred cCcHHHHHHHHHhhc-------CCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHH
Q psy15524 5 QVTTVQQLSIQPILD-------GGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIF 77 (930)
Q Consensus 5 ~l~~~Q~~ai~~~~~-------g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~ 77 (930)
+|+++|.+|+..+.. ++++++.+|||||||.+++..+..... ++++++|+..|+.|+.+.+
T Consensus 3 ~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~~------------~~l~~~p~~~l~~Q~~~~~ 70 (184)
T PF04851_consen 3 KLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELAR------------KVLIVAPNISLLEQWYDEF 70 (184)
T ss_dssp EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHHC------------EEEEEESSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhcccc------------ceeEecCHHHHHHHHHHHH
Confidence 589999999999874 578999999999999998876655542 5999999999999999999
Q ss_pred HHHhhhcCCce----------eEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcCCC----------ccCCCccEE
Q psy15524 78 TKLCKSFTWIV----------PSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTET----------LKFSKVEHL 137 (930)
Q Consensus 78 ~~~~~~~~~~~----------~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~----------~~l~~l~~v 137 (930)
..+........ .....................+++++|...+......... ......++|
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v 150 (184)
T PF04851_consen 71 DDFGSEKYNFFEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKFDLV 150 (184)
T ss_dssp HHHSTTSEEEEE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGSESEE
T ss_pred HHhhhhhhhhcccccccccccccccccccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhccccCCEE
Confidence 76654321110 0011111122222333345688999999999877653211 223567899
Q ss_pred EEcccccccccCcHHHHHHHHHHHhhcCCCceEEEEEeecC
Q psy15524 138 VLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLT 178 (930)
Q Consensus 138 ViDE~h~~~~~~~~~~~~~i~~~l~~~~~~~~~i~lSAT~~ 178 (930)
|+||||++....- +..++. .+...+++|||||.
T Consensus 151 I~DEaH~~~~~~~---~~~i~~-----~~~~~~l~lTATp~ 183 (184)
T PF04851_consen 151 IIDEAHHYPSDSS---YREIIE-----FKAAFILGLTATPF 183 (184)
T ss_dssp EEETGGCTHHHHH---HHHHHH-----SSCCEEEEEESS-S
T ss_pred EEehhhhcCCHHH---HHHHHc-----CCCCeEEEEEeCcc
Confidence 9999999865441 233333 44568999999985
|
1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B .... |
| >cd00046 DEXDc DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.1e-13 Score=132.14 Aligned_cols=144 Identities=40% Similarity=0.544 Sum_probs=106.2
Q ss_pred CcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHHHHhhccCCCcceEEEeCCCchHH
Q psy15524 430 GDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKS 509 (930)
Q Consensus 430 ~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~ 509 (930)
+++++.+|||+|||.+++..+...... ....+++|++|++.++.|+.+.+...... ......+.++.....
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~-------~~~~~~lv~~p~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 71 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDS-------LKGGQVLVLAPTRELANQVAERLKELFGE--GIKVGYLIGGTSIKQ 71 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhc-------ccCCCEEEEcCcHHHHHHHHHHHHHHhhC--CcEEEEEecCcchhH
Confidence 468999999999999988888876653 23568999999999999999999887754 344555666655554
Q ss_pred HHHHHhcCCcEEEECchhHHHhhhccCCcccccceEEEEecchhhhhcCcHHHHHHHHHHHhhcCccceEEEEcccc
Q psy15524 510 EKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATL 586 (930)
Q Consensus 510 ~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~l~~~g~~~~l~~i~~~l~~~~~~~q~vl~SAT~ 586 (930)
.......+.+|+++|++.+...+.... .....++++|+||+|.+....+....... ........+++++|||+
T Consensus 72 ~~~~~~~~~~i~i~t~~~~~~~~~~~~-~~~~~~~~iiiDE~h~~~~~~~~~~~~~~---~~~~~~~~~~i~~saTp 144 (144)
T cd00046 72 QEKLLSGKTDIVVGTPGRLLDELERLK-LSLKKLDLLILDEAHRLLNQGFGLLGLKI---LLKLPKDRQVLLLSATP 144 (144)
T ss_pred HHHHhcCCCCEEEECcHHHHHHHHcCC-cchhcCCEEEEeCHHHHhhcchHHHHHHH---HhhCCccceEEEEeccC
Confidence 444556789999999999987776532 33567899999999999876654432111 11223477899999996
|
A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region. |
| >COG4889 Predicted helicase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.5e-14 Score=161.31 Aligned_cols=322 Identities=19% Similarity=0.238 Sum_probs=181.9
Q ss_pred CCCCCCHHHHHhHHhhhcC---Cc-EEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHH
Q psy15524 411 NITQVTTVQQLSIQPILDG---GD-VLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIF 486 (930)
Q Consensus 411 ~~~~~~~iQ~~~i~~il~~---~d-~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~ 486 (930)
.-..|+|+|+.||....+| +| -=+.+.+|+|||++. +-+.+.+. ..++|+++|+.+|..|..+.|
T Consensus 158 ~~kk~R~hQq~Aid~a~~~F~~n~RGkLIMAcGTGKTfTs-LkisEala----------~~~iL~LvPSIsLLsQTlrew 226 (1518)
T COG4889 158 KPKKPRPHQQTAIDAAKEGFSDNDRGKLIMACGTGKTFTS-LKISEALA----------AARILFLVPSISLLSQTLREW 226 (1518)
T ss_pred CCCCCChhHHHHHHHHHhhcccccCCcEEEecCCCccchH-HHHHHHHh----------hhheEeecchHHHHHHHHHHH
Confidence 4568999999999998876 12 445677899999984 45555543 256999999999999999988
Q ss_pred HHhhccCCCcceEEEeCCCch-----------------------HHHHH--HHhcCCcEEEECchhHHHhhhccCCcccc
Q psy15524 487 TKLCKSFTWIVPSWLTGGEKM-----------------------KSEKA--RIRKGISILVATPGRLLDHCKHTETLKFS 541 (930)
Q Consensus 487 ~~~~~~~~~~~~~~~~gg~~~-----------------------~~~~~--~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~ 541 (930)
..-..- . +.+..++.+.+. .+.+. +-..+.-|+++|...+...-.. ...-+.
T Consensus 227 ~~~~~l-~-~~a~aVcSD~kvsrs~eDik~sdl~~p~sT~~~~il~~~~~~~k~~~~~vvFsTYQSl~~i~eA-Qe~G~~ 303 (1518)
T COG4889 227 TAQKEL-D-FRASAVCSDDKVSRSAEDIKASDLPIPVSTDLEDILSEMEHRQKANGLTVVFSTYQSLPRIKEA-QEAGLD 303 (1518)
T ss_pred hhccCc-c-ceeEEEecCccccccccccccccCCCCCcccHHHHHHHHHHhhccCCcEEEEEcccchHHHHHH-HHcCCC
Confidence 764321 1 122222222111 11111 1123456899998887554332 234578
Q ss_pred cceEEEEecchhhhhcCcHHHHHHHHHHHh--hcCccceEEEEccccCH---HHHHH-----------------------
Q psy15524 542 KVEHLVLDEADRILDQGYERDIAEFLEILK--KQKPQFQSILLSATLTP---AVQRL----------------------- 593 (930)
Q Consensus 542 ~l~~lVlDEah~l~~~g~~~~l~~i~~~l~--~~~~~~q~vl~SAT~~~---~~~~l----------------------- 593 (930)
.++++|.|||||-........-..-...+. +.-...+.+.++||+.- ..+.-
T Consensus 304 ~fDliicDEAHRTtGa~~a~dd~saFt~vHs~~niKa~kRlYmTATPkiy~eS~K~kAkd~s~~l~SMDDe~~fGeef~r 383 (1518)
T COG4889 304 EFDLIICDEAHRTTGATLAGDDKSAFTRVHSDQNIKAAKRLYMTATPKIYSESSKAKAKDHSAELSSMDDELTFGEEFHR 383 (1518)
T ss_pred CccEEEecchhccccceecccCcccceeecCcchhHHHHhhhcccCchhhchhhhhhhhhccceeeccchhhhhchhhhc
Confidence 899999999999653221100000000000 00002234677888631 11111
Q ss_pred -------HhhhcCCCEEEE-ccCCCCcccCccceecCCCceEEEEEcCch------hhHHHHHHHHHhhccCC-------
Q psy15524 594 -------AGMTLQNPIQID-AADSTDIHNTTDSLVIPDSLKQHFIVTPPK------LRLVALASFILGKCQNV------- 652 (930)
Q Consensus 594 -------~~~~~~~~~~i~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~l~~~l~~~~~~~------- 652 (930)
.+-.+.+...+. ..+...+ ...+.....-.... .+......-+.......
T Consensus 384 l~FgeAv~rdlLTDYKVmvlaVd~~~i---------~~~~~~~~~~~~~~L~~dd~~kIvG~wnGlakr~g~~n~~~~~~ 454 (1518)
T COG4889 384 LGFGEAVERDLLTDYKVMVLAVDKEVI---------AGVLQSVLSGPSKGLALDDVSKIVGCWNGLAKRNGEDNDLKNIK 454 (1518)
T ss_pred ccHHHHHHhhhhccceEEEEEechhhh---------hhhhhhhccCcccccchhhhhhhhhhhhhhhhhccccccccCCc
Confidence 111111111111 0000000 00000000000001 11111111121111100
Q ss_pred -CcCCCceEEEEecchhhHHHHHHHHhhhcC----------CC--ceEEEecCCCCHHHHHHHHH---HhhcCCCcEEEe
Q psy15524 653 -NEDEESKMLVFMATQDMADYHTELLSTVLG----------EN--IAFFKLHGSMSQSERTEVFK---TFRSVKSGVLIC 716 (930)
Q Consensus 653 -~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~----------~~--~~~~~lhg~~~~~~R~~v~~---~F~~~~~~vLv~ 716 (930)
...+-.+.|-||.+.+....+++.+..... ++ +.+-...|.|...+|...+. .|...+++||--
T Consensus 455 ~d~ap~~RAIaF~k~I~tSK~i~~sFe~Vve~Y~~Elk~d~~nL~iSi~HvDGtmNal~R~~l~~l~~~~~~neckIlSN 534 (1518)
T COG4889 455 ADTAPMQRAIAFAKDIKTSKQIAESFETVVEAYDEELKKDFKNLKISIDHVDGTMNALERLDLLELKNTFEPNECKILSN 534 (1518)
T ss_pred CCchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEeecccccccHHHHHHHHhccCCCCcchheeecc
Confidence 011235789999999888777666544321 23 44555678999999955443 356678889999
Q ss_pred ccccccccCCCCccEEEEecCCCChhhHHhhhcccccCC
Q psy15524 717 TDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVG 755 (930)
Q Consensus 717 T~~~~~GlDip~v~~VI~~~~p~s~~~y~qr~GRagR~g 755 (930)
-..+++|+|+|..+-||.+++-.+..+.+|-+||..|-.
T Consensus 535 aRcLSEGVDVPaLDsViFf~pr~smVDIVQaVGRVMRKa 573 (1518)
T COG4889 535 ARCLSEGVDVPALDSVIFFDPRSSMVDIVQAVGRVMRKA 573 (1518)
T ss_pred chhhhcCCCccccceEEEecCchhHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999953
|
|
| >cd00046 DEXDc DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.8e-13 Score=130.57 Aligned_cols=144 Identities=41% Similarity=0.557 Sum_probs=107.8
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHHhhhcCCceeEEeeCCCchHH
Q psy15524 21 GDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKS 100 (930)
Q Consensus 21 ~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 100 (930)
+++++.+|||+|||..++..+.+.... ....+++|++|++.++.|+.+.+...... ......+.++.....
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~-------~~~~~~lv~~p~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 71 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDS-------LKGGQVLVLAPTRELANQVAERLKELFGE--GIKVGYLIGGTSIKQ 71 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhc-------ccCCCEEEEcCcHHHHHHHHHHHHHHhhC--CcEEEEEecCcchhH
Confidence 478999999999999999888877654 12456999999999999999999888764 355666666665555
Q ss_pred HHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCcHHHHHHHHHHHhhcCCCceEEEEEeec
Q psy15524 101 EKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATL 177 (930)
Q Consensus 101 ~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~~~~~~~i~~~l~~~~~~~~~i~lSAT~ 177 (930)
.........+|+++|++.+...+.. ........+++||||+|.+......... ...........+++++||||
T Consensus 72 ~~~~~~~~~~i~i~t~~~~~~~~~~-~~~~~~~~~~iiiDE~h~~~~~~~~~~~---~~~~~~~~~~~~~i~~saTp 144 (144)
T cd00046 72 QEKLLSGKTDIVVGTPGRLLDELER-LKLSLKKLDLLILDEAHRLLNQGFGLLG---LKILLKLPKDRQVLLLSATP 144 (144)
T ss_pred HHHHhcCCCCEEEECcHHHHHHHHc-CCcchhcCCEEEEeCHHHHhhcchHHHH---HHHHhhCCccceEEEEeccC
Confidence 5455566789999999999887765 2334567899999999999876544332 11222234567899999997
|
A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region. |
| >KOG0950|consensus | Back alignment and domain information |
|---|
Probab=99.53 E-value=3.4e-14 Score=161.99 Aligned_cols=166 Identities=19% Similarity=0.212 Sum_probs=134.1
Q ss_pred CCccCcHHHHHHH--HHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHH
Q psy15524 2 NITQVTTVQQLSI--QPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTK 79 (930)
Q Consensus 2 g~~~l~~~Q~~ai--~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~ 79 (930)
|+..++.||.+|+ +.++.++|++..+||+.|||++.-+-++..+...++ .++.+.|..+.+..-...+..
T Consensus 220 gi~~~fewq~ecls~~~~~e~~nliys~Pts~gktlvaeilml~~~l~~rr--------~~llilp~vsiv~Ek~~~l~~ 291 (1008)
T KOG0950|consen 220 GILKLFEWQAECLSLPRLLERKNLIYSLPTSAGKTLVAEILMLREVLCRRR--------NVLLILPYVSIVQEKISALSP 291 (1008)
T ss_pred hHHHHHHHHHHHhcchhhhcccceEEeCCCccchHHHHHHHHHHHHHHHhh--------ceeEecceeehhHHHHhhhhh
Confidence 6678899999998 668899999999999999999999988888776433 389999999999999999988
Q ss_pred HhhhcCCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcC-CCccCCCccEEEEcccccccccCcHHHHHHHH
Q psy15524 80 LCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHT-ETLKFSKVEHLVLDEADRILDQGYERDIAEFL 158 (930)
Q Consensus 80 ~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~-~~~~l~~l~~vViDE~h~~~~~~~~~~~~~i~ 158 (930)
+....+ +.+..++|....... .+.-++.|||.|+.....++. ..-.+..+++|||||.|.+.+.+++..++.++
T Consensus 292 ~~~~~G-~~ve~y~g~~~p~~~----~k~~sv~i~tiEkanslin~lie~g~~~~~g~vvVdElhmi~d~~rg~~lE~~l 366 (1008)
T KOG0950|consen 292 FSIDLG-FPVEEYAGRFPPEKR----RKRESVAIATIEKANSLINSLIEQGRLDFLGMVVVDELHMIGDKGRGAILELLL 366 (1008)
T ss_pred hccccC-CcchhhcccCCCCCc----ccceeeeeeehHhhHhHHHHHHhcCCccccCcEEEeeeeeeeccccchHHHHHH
Confidence 888777 666666665543322 334679999999987665532 22347789999999999999999999999999
Q ss_pred HHHhhcC--CCceEEEEEeecCCC
Q psy15524 159 EILKKQK--PQFQSILLSATLTPA 180 (930)
Q Consensus 159 ~~l~~~~--~~~~~i~lSAT~~~~ 180 (930)
..+...+ ..+|+||+|||+++-
T Consensus 367 ~k~~y~~~~~~~~iIGMSATi~N~ 390 (1008)
T KOG0950|consen 367 AKILYENLETSVQIIGMSATIPNN 390 (1008)
T ss_pred HHHHHhccccceeEeeeecccCCh
Confidence 8887544 347799999999873
|
|
| >PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3 | Back alignment and domain information |
|---|
Probab=99.52 E-value=6e-14 Score=140.78 Aligned_cols=154 Identities=21% Similarity=0.230 Sum_probs=101.7
Q ss_pred CCCHHHHHhHHhhhc-------CCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHH
Q psy15524 414 QVTTVQQLSIQPILD-------GGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIF 486 (930)
Q Consensus 414 ~~~~iQ~~~i~~il~-------~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~ 486 (930)
+++++|.+++..+.. ++.+++.+|||||||.+++..+.+... ++++++|+..|+.|+.+.+
T Consensus 3 ~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~~------------~~l~~~p~~~l~~Q~~~~~ 70 (184)
T PF04851_consen 3 KLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELAR------------KVLIVAPNISLLEQWYDEF 70 (184)
T ss_dssp EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHHC------------EEEEEESSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhcccc------------ceeEecCHHHHHHHHHHHH
Confidence 578999999999884 578999999999999997765554431 6999999999999999999
Q ss_pred HHhhccCCCcce----------EEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhccC----------CcccccceEE
Q psy15524 487 TKLCKSFTWIVP----------SWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTE----------TLKFSKVEHL 546 (930)
Q Consensus 487 ~~~~~~~~~~~~----------~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~----------~~~~~~l~~l 546 (930)
..+......... ....................+++++|..+|........ .......++|
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v 150 (184)
T PF04851_consen 71 DDFGSEKYNFFEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKFDLV 150 (184)
T ss_dssp HHHSTTSEEEEE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGSESEE
T ss_pred HHhhhhhhhhcccccccccccccccccccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhccccCCEE
Confidence 666543211100 01111111112222234568899999999977654311 1234567899
Q ss_pred EEecchhhhhcCcHHHHHHHHHHHhhcCccceEEEEccccC
Q psy15524 547 VLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLT 587 (930)
Q Consensus 547 VlDEah~l~~~g~~~~l~~i~~~l~~~~~~~q~vl~SAT~~ 587 (930)
|+||||++....- ...++. .....+++||||+.
T Consensus 151 I~DEaH~~~~~~~---~~~i~~-----~~~~~~l~lTATp~ 183 (184)
T PF04851_consen 151 IIDEAHHYPSDSS---YREIIE-----FKAAFILGLTATPF 183 (184)
T ss_dssp EEETGGCTHHHHH---HHHHHH-----SSCCEEEEEESS-S
T ss_pred EEehhhhcCCHHH---HHHHHc-----CCCCeEEEEEeCcc
Confidence 9999998875441 333333 23667899999985
|
1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B .... |
| >PRK11131 ATP-dependent RNA helicase HrpA; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=9e-13 Score=160.55 Aligned_cols=145 Identities=23% Similarity=0.300 Sum_probs=85.4
Q ss_pred HHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcc----cHHHHHHHHHHHHHHhhhcC
Q psy15524 10 QQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILP----TRELALQTLEIFTKLCKSFT 85 (930)
Q Consensus 10 Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P----~~~L~~q~~~~~~~~~~~~~ 85 (930)
-.+.+.++..+..++++|+||||||. .+|.+-.-.. ......+++.-| +++||.++.+++......
T Consensus 79 r~~Il~ai~~~~VviI~GeTGSGKTT--qlPq~lle~g------~g~~g~I~~TQPRRlAArsLA~RVA~El~~~lG~-- 148 (1294)
T PRK11131 79 KQDILEAIRDHQVVIVAGETGSGKTT--QLPKICLELG------RGVKGLIGHTQPRRLAARTVANRIAEELETELGG-- 148 (1294)
T ss_pred HHHHHHHHHhCCeEEEECCCCCCHHH--HHHHHHHHcC------CCCCCceeeCCCcHHHHHHHHHHHHHHHhhhhcc--
Confidence 34455556566678899999999999 5774322110 011123444457 467888888777643221
Q ss_pred CceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccc-cccccCcHHHHHHHHHHHhhc
Q psy15524 86 WIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEAD-RILDQGYERDIAEFLEILKKQ 164 (930)
Q Consensus 86 ~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h-~~~~~~~~~~~~~i~~~l~~~ 164 (930)
.++.- ..... ....+++|+|+||++|++.+... ..++++++||||||| ++++.+|... ++..+...
T Consensus 149 --~VGY~---vrf~~---~~s~~t~I~v~TpG~LL~~l~~d--~~Ls~~~~IIIDEAHERsLn~DfLLg---~Lk~lL~~ 215 (1294)
T PRK11131 149 --CVGYK---VRFND---QVSDNTMVKLMTDGILLAEIQQD--RLLMQYDTIIIDEAHERSLNIDFILG---YLKELLPR 215 (1294)
T ss_pred --eecee---ecCcc---ccCCCCCEEEEChHHHHHHHhcC--CccccCcEEEecCccccccccchHHH---HHHHhhhc
Confidence 11111 11111 12356899999999999998753 338999999999999 5777766432 12222122
Q ss_pred CCCceEEEEEeec
Q psy15524 165 KPQFQSILLSATL 177 (930)
Q Consensus 165 ~~~~~~i~lSAT~ 177 (930)
.++.|+|++|||+
T Consensus 216 rpdlKvILmSATi 228 (1294)
T PRK11131 216 RPDLKVIITSATI 228 (1294)
T ss_pred CCCceEEEeeCCC
Confidence 2344555555555
|
|
| >KOG0392|consensus | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.7e-12 Score=148.84 Aligned_cols=339 Identities=19% Similarity=0.216 Sum_probs=207.0
Q ss_pred CCCHHHHHhHHhhh--c--CCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHHHHh
Q psy15524 414 QVTTVQQLSIQPIL--D--GGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKL 489 (930)
Q Consensus 414 ~~~~iQ~~~i~~il--~--~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~ 489 (930)
.++.+|++.++.+. + +=+-|+|-..|-||||..+--+....+..+.+...-.....|||||. .|+--|..++.++
T Consensus 975 ~LRkYQqEGVnWLaFLnky~LHGILcDDMGLGKTLQticilAsd~y~r~s~~~e~~~~PSLIVCPs-TLtGHW~~E~~kf 1053 (1549)
T KOG0392|consen 975 KLRKYQQEGVNWLAFLNKYKLHGILCDDMGLGKTLQTICILASDHYKRRSESSEFNRLPSLIVCPS-TLTGHWKSEVKKF 1053 (1549)
T ss_pred HHHHHHHhccHHHHHHHHhcccceeeccccccHHHHHHHHHHHHHHhhcccchhhccCCeEEECCc-hhhhHHHHHHHHh
Confidence 35678998877643 3 23689999999999997544444333333222222234458999996 8999999999988
Q ss_pred hccCCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhccCCcccccceEEEEecchhhhhcCcHHHHHHHHHH
Q psy15524 490 CKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEI 569 (930)
Q Consensus 490 ~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~l~~~g~~~~l~~i~~~ 569 (930)
+.. +.+...+|+...+...+.-.++.+|+|++++-+.+-... +.-..+.|.|+||-|-|-+. ...+...++.
T Consensus 1054 ~pf---L~v~~yvg~p~~r~~lR~q~~~~~iiVtSYDv~RnD~d~---l~~~~wNYcVLDEGHVikN~--ktkl~kavkq 1125 (1549)
T KOG0392|consen 1054 FPF---LKVLQYVGPPAERRELRDQYKNANIIVTSYDVVRNDVDY---LIKIDWNYCVLDEGHVIKNS--KTKLTKAVKQ 1125 (1549)
T ss_pred cch---hhhhhhcCChHHHHHHHhhccccceEEeeHHHHHHHHHH---HHhcccceEEecCcceecch--HHHHHHHHHH
Confidence 754 444445666544444444445679999998766422211 12245789999999977433 2333444444
Q ss_pred HhhcCccceEEEEccccC-HHHHHHHh---h-------------------------------------------------
Q psy15524 570 LKKQKPQFQSILLSATLT-PAVQRLAG---M------------------------------------------------- 596 (930)
Q Consensus 570 l~~~~~~~q~vl~SAT~~-~~~~~l~~---~------------------------------------------------- 596 (930)
+.. + ..+.+|.|+- +.+.++-. .
T Consensus 1126 L~a---~-hRLILSGTPIQNnvleLWSLFdFLMPGfLGtEKqFqsrf~kpI~asRd~K~Sske~EaG~lAleaLHKqVLP 1201 (1549)
T KOG0392|consen 1126 LRA---N-HRLILSGTPIQNNVLELWSLFDFLMPGFLGTEKQFQSRFGKPILASRDPKSSSKEQEAGVLALEALHKQVLP 1201 (1549)
T ss_pred Hhh---c-ceEEeeCCCcccCHHHHHHHHHHhcccccCcHHHHHHHhcchhhhhcCcccchhHHHhhHHHHHHHHHHHHH
Confidence 432 3 3466788842 11111100 0
Q ss_pred ---------hcCC-C-EEEEccC------------------------CCCcccCccc---------eecCCCceE--EEE
Q psy15524 597 ---------TLQN-P-IQIDAAD------------------------STDIHNTTDS---------LVIPDSLKQ--HFI 630 (930)
Q Consensus 597 ---------~~~~-~-~~i~~~~------------------------~~~~~~~~~~---------~~~~~~~~~--~~~ 630 (930)
.+.+ | ..|.-+. ..+....... ...-..+.. ..+
T Consensus 1202 F~LRRlKedVL~DLPpKIIQDyyCeLs~lQ~kLY~df~~~~k~~~~~~~d~~~~S~gt~~~HvFqaLqYlrKLcnHpaLv 1281 (1549)
T KOG0392|consen 1202 FLLRRLKEDVLKDLPPKIIQDYYCELSPLQKKLYRDFVKKAKQCVSSQIDGGEESLGTDKTHVFQALQYLRKLCNHPALV 1281 (1549)
T ss_pred HHHHHHHHHHHhhCChhhhhheeeccCHHHHHHHHHHHHHhccccccccccchhccCcchHHHHHHHHHHHHhcCCccee
Confidence 0000 1 0000000 0000000000 000000000 011
Q ss_pred Ec-----------------------CchhhHHHHHHHHHhhccCCCc-C---------CCceEEEEecchhhHHHHHHHH
Q psy15524 631 VT-----------------------PPKLRLVALASFILGKCQNVNE-D---------EESKMLVFMATQDMADYHTELL 677 (930)
Q Consensus 631 ~~-----------------------~~~~~~~~l~~~l~~~~~~~~~-~---------~~~k~iVF~~s~~~~~~~~~~l 677 (930)
.. ....|+.+|..+|... .--++ . .+++++|||.-+.+.+.+.+-|
T Consensus 1282 lt~~hp~la~i~~~l~~~~~~LHdi~hspKl~AL~qLL~eC-Gig~~~~~~~g~~s~vsqHRiLIFcQlK~mlDlVekDL 1360 (1549)
T KOG0392|consen 1282 LTPVHPDLAAIVSHLAHFNSSLHDIQHSPKLSALKQLLSEC-GIGNNSDSEVGTPSDVSQHRILIFCQLKSMLDLVEKDL 1360 (1549)
T ss_pred eCCCcchHHHHHHHHHHhhhhHHHhhhchhHHHHHHHHHHh-CCCCCCcccccCcchhccceeEEeeeHHHHHHHHHHHH
Confidence 11 1123555666655542 11111 1 3679999999999999887666
Q ss_pred hhhcCCCceEEEecCCCCHHHHHHHHHHhhcC-CCcE-EEeccccccccCCCCccEEEEecCCCChhhHHhhhcccccCC
Q psy15524 678 STVLGENIAFFKLHGSMSQSERTEVFKTFRSV-KSGV-LICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVG 755 (930)
Q Consensus 678 ~~~~~~~~~~~~lhg~~~~~~R~~v~~~F~~~-~~~v-Lv~T~~~~~GlDip~v~~VI~~~~p~s~~~y~qr~GRagR~g 755 (930)
-+-.-+.+.++.+.|..++.+|.++.++|.++ .++| |++|-|.+-|+|+.+.|.||.++-.++|..-+|.+-||.|.|
T Consensus 1361 ~k~~mpsVtymRLDGSVpp~~R~kiV~~FN~DptIDvLlLTThVGGLGLNLTGADTVVFvEHDWNPMrDLQAMDRAHRIG 1440 (1549)
T KOG0392|consen 1361 FKKYMPSVTYMRLDGSVPPGDRQKIVERFNEDPTIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIG 1440 (1549)
T ss_pred hhhhcCceeEEEecCCCCcHHHHHHHHHhcCCCceeEEEEeeeccccccccCCCceEEEEecCCCchhhHHHHHHHHhhc
Confidence 55444578889999999999999999999998 5666 577899999999999999999999999999999999999999
Q ss_pred CCceE--EEEeCc
Q psy15524 756 HEGSS--LLFLIP 766 (930)
Q Consensus 756 ~~g~~--~~~~~~ 766 (930)
++-.. +-+++.
T Consensus 1441 QKrvVNVyRlItr 1453 (1549)
T KOG0392|consen 1441 QKRVVNVYRLITR 1453 (1549)
T ss_pred Cceeeeeeeehhc
Confidence 97554 344444
|
|
| >KOG0953|consensus | Back alignment and domain information |
|---|
Probab=99.50 E-value=5.8e-13 Score=142.85 Aligned_cols=280 Identities=19% Similarity=0.207 Sum_probs=169.5
Q ss_pred EEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHHHHhhccCCCcceEEEeCCCchHHHH
Q psy15524 432 VLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEK 511 (930)
Q Consensus 432 ~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~ 511 (930)
++-++||.||||.- +++++.. ....++.-|.|-||.++++.+.+.+- -+.+++|.+......
T Consensus 194 i~H~GPTNSGKTy~----ALqrl~~---------aksGvycGPLrLLA~EV~~r~na~gi-----pCdL~TGeE~~~~~~ 255 (700)
T KOG0953|consen 194 IMHVGPTNSGKTYR----ALQRLKS---------AKSGVYCGPLRLLAHEVYDRLNALGI-----PCDLLTGEERRFVLD 255 (700)
T ss_pred EEEeCCCCCchhHH----HHHHHhh---------hccceecchHHHHHHHHHHHhhhcCC-----CccccccceeeecCC
Confidence 66789999999986 5666654 44579999999999999999988763 344566665432221
Q ss_pred HHHhcCCcEEEECchhHHHhhhccCCcccccceEEEEecchhhhhcCcHHHHH-HHHHHHhhcCccceEEEEccccCHHH
Q psy15524 512 ARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIA-EFLEILKKQKPQFQSILLSATLTPAV 590 (930)
Q Consensus 512 ~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~l~~~g~~~~l~-~i~~~l~~~~~~~q~vl~SAT~~~~~ 590 (930)
. -..++.+-||-+... .-..+++.||||+++|-|...+-.+. .++....+ .....+=-|-+ +-+
T Consensus 256 ~--~~~a~hvScTVEM~s---------v~~~yeVAViDEIQmm~Dp~RGwAWTrALLGl~Ad---EiHLCGepsvl-dlV 320 (700)
T KOG0953|consen 256 N--GNPAQHVSCTVEMVS---------VNTPYEVAVIDEIQMMRDPSRGWAWTRALLGLAAD---EIHLCGEPSVL-DLV 320 (700)
T ss_pred C--CCcccceEEEEEEee---------cCCceEEEEehhHHhhcCcccchHHHHHHHhhhhh---hhhccCCchHH-HHH
Confidence 1 123567777755331 12357899999999998765442222 22222211 22211111111 223
Q ss_pred HHHHhhhcCCCEEEEccCCCCcccCccceecCCCceEEEEEcCchhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhH
Q psy15524 591 QRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMA 670 (930)
Q Consensus 591 ~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~ 670 (930)
+.++.... +.+.+..+. ...+-.-...+..-+. +. ..+-++|-++ ++..
T Consensus 321 ~~i~k~TG-d~vev~~Ye----------------------Rl~pL~v~~~~~~sl~----nl---k~GDCvV~FS-kk~I 369 (700)
T KOG0953|consen 321 RKILKMTG-DDVEVREYE----------------------RLSPLVVEETALGSLS----NL---KPGDCVVAFS-KKDI 369 (700)
T ss_pred HHHHhhcC-CeeEEEeec----------------------ccCcceehhhhhhhhc----cC---CCCCeEEEee-hhhH
Confidence 33333322 122222111 0000000011111121 11 1556666554 4444
Q ss_pred HHHHHHHhhhcCCCceEEEecCCCCHHHHHHHHHHhhc--CCCcEEEeccccccccCCCCccEEEEecC---------CC
Q psy15524 671 DYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRS--VKSGVLICTDVAARGLDLPLVDWIVQYTA---------PS 739 (930)
Q Consensus 671 ~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~v~~~F~~--~~~~vLv~T~~~~~GlDip~v~~VI~~~~---------p~ 739 (930)
-.+...+.+.. +..+..++|+++++.|.+.-..|.+ ++.+||||||+.++|+|+ +++-||.++. |.
T Consensus 370 ~~~k~kIE~~g--~~k~aVIYGsLPPeTr~aQA~~FNd~~~e~dvlVAsDAIGMGLNL-~IrRiiF~sl~Kysg~e~~~i 446 (700)
T KOG0953|consen 370 FTVKKKIEKAG--NHKCAVIYGSLPPETRLAQAALFNDPSNECDVLVASDAIGMGLNL-NIRRIIFYSLIKYSGRETEDI 446 (700)
T ss_pred HHHHHHHHHhc--CcceEEEecCCCCchhHHHHHHhCCCCCccceEEeeccccccccc-ceeEEEEeecccCCcccceec
Confidence 45555555542 3347778999999999999999987 899999999999999999 7899998874 34
Q ss_pred ChhhHHhhhcccccCCC---CceEEEEeCcccHHHHHHHHhcC
Q psy15524 740 SSTDYVHRVGRTARVGH---EGSSLLFLIPSEVKLVEELQNRR 779 (930)
Q Consensus 740 s~~~y~qr~GRagR~g~---~g~~~~~~~~~e~~~~~~l~~~~ 779 (930)
+..+..|..|||||.|. .|....|- .++...+++..+..
T Consensus 447 t~sqikQIAGRAGRf~s~~~~G~vTtl~-~eDL~~L~~~l~~p 488 (700)
T KOG0953|consen 447 TVSQIKQIAGRAGRFGSKYPQGEVTTLH-SEDLKLLKRILKRP 488 (700)
T ss_pred cHHHHHHHhhcccccccCCcCceEEEee-HhhHHHHHHHHhCC
Confidence 67889999999999975 35444433 35566676666543
|
|
| >PRK12904 preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.49 E-value=6.9e-13 Score=154.81 Aligned_cols=127 Identities=20% Similarity=0.235 Sum_probs=102.0
Q ss_pred cCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHH-HHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHHhhh
Q psy15524 5 QVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPII-QKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKS 83 (930)
Q Consensus 5 ~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l-~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~ 83 (930)
.|++.|--..-.+..| -+..++||+|||+++.+|++ +.+ . |..+-|++||..||.|.++.+..+...
T Consensus 81 ~~~dvQlig~l~L~~G--~Iaem~TGeGKTLva~lpa~l~aL-~---------G~~V~IvTpn~yLA~rd~e~~~~l~~~ 148 (830)
T PRK12904 81 RHFDVQLIGGMVLHEG--KIAEMKTGEGKTLVATLPAYLNAL-T---------GKGVHVVTVNDYLAKRDAEWMGPLYEF 148 (830)
T ss_pred CCCccHHHhhHHhcCC--chhhhhcCCCcHHHHHHHHHHHHH-c---------CCCEEEEecCHHHHHHHHHHHHHHHhh
Confidence 4677787766656566 49999999999999999996 444 2 334779999999999999999999987
Q ss_pred cCCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHH-HHHHhcCCC-----ccCCCccEEEEccccccc
Q psy15524 84 FTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRL-LDHCKHTET-----LKFSKVEHLVLDEADRIL 146 (930)
Q Consensus 84 ~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l-~~~l~~~~~-----~~l~~l~~vViDE~h~~~ 146 (930)
++ +.++++.|+.+........ .+||++|||.++ .++++..-. ..++.+.++||||||.|+
T Consensus 149 LG-lsv~~i~~~~~~~er~~~y--~~dI~ygT~~elgfDyLrd~~~~~~~~~~~r~~~~aIvDEaDsiL 214 (830)
T PRK12904 149 LG-LSVGVILSGMSPEERREAY--AADITYGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIVDEVDSIL 214 (830)
T ss_pred cC-CeEEEEcCCCCHHHHHHhc--CCCeEEECCcchhhhhhhcccccchhhhcccccceEEEechhhhe
Confidence 77 8888899887776665553 489999999999 888875322 236789999999999875
|
|
| >COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.48 E-value=5.7e-12 Score=151.85 Aligned_cols=120 Identities=19% Similarity=0.239 Sum_probs=82.5
Q ss_pred HHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHHHHHHHHHHhhcCCC-cEEEe
Q psy15524 638 LVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSVKS-GVLIC 716 (930)
Q Consensus 638 ~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~v~~~F~~~~~-~vLv~ 716 (930)
...+...+....... +++++|||+|.+..+.+.+.+...... -....+|.. .+...++.|+.+.- .++|+
T Consensus 464 ~~~~~~~i~~~~~~~----~~~~lvlF~Sy~~l~~~~~~~~~~~~~--~~v~~q~~~---~~~~~l~~f~~~~~~~~lv~ 534 (654)
T COG1199 464 LAKLAAYLREILKAS----PGGVLVLFPSYEYLKRVAERLKDERST--LPVLTQGED---EREELLEKFKASGEGLILVG 534 (654)
T ss_pred HHHHHHHHHHHHhhc----CCCEEEEeccHHHHHHHHHHHhhcCcc--ceeeecCCC---cHHHHHHHHHHhcCCeEEEe
Confidence 344444444433322 569999999999999999998864211 123345554 44578888887655 89999
Q ss_pred ccccccccCCCCc--cEEEEecCCC------------------------------ChhhHHhhhcccccCCCCceEEEEe
Q psy15524 717 TDVAARGLDLPLV--DWIVQYTAPS------------------------------SSTDYVHRVGRTARVGHEGSSLLFL 764 (930)
Q Consensus 717 T~~~~~GlDip~v--~~VI~~~~p~------------------------------s~~~y~qr~GRagR~g~~g~~~~~~ 764 (930)
|..+++|+|+|+- ..||...+|. -.....|-+||.-|.-.+...++++
T Consensus 535 ~gsf~EGVD~~g~~l~~vvI~~lPfp~p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlIR~~~D~G~ivll 614 (654)
T COG1199 535 GGSFWEGVDFPGDALRLVVIVGLPFPNPDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLIRSEDDRGVIVLL 614 (654)
T ss_pred eccccCcccCCCCCeeEEEEEecCCCCCCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHhhccccccCCCceEEEEe
Confidence 9999999999865 6788777664 1235679999999966554444444
Q ss_pred Cc
Q psy15524 765 IP 766 (930)
Q Consensus 765 ~~ 766 (930)
..
T Consensus 615 D~ 616 (654)
T COG1199 615 DK 616 (654)
T ss_pred cc
Confidence 43
|
|
| >PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=5e-11 Score=142.20 Aligned_cols=119 Identities=21% Similarity=0.318 Sum_probs=82.4
Q ss_pred HHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHHHHHHHHHHhhc----CCCcE
Q psy15524 638 LVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRS----VKSGV 713 (930)
Q Consensus 638 ~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~v~~~F~~----~~~~v 713 (930)
...+...+...+. . .+.++||++|.+..+.+++.+.... +..++ .+|.. .|..+++.|++ ++..|
T Consensus 520 ~~~~~~~i~~l~~-~----~gg~LVlFtSy~~l~~v~~~l~~~~--~~~ll-~Q~~~---~~~~ll~~f~~~~~~~~~~V 588 (697)
T PRK11747 520 TAEMAEFLPELLE-K----HKGSLVLFASRRQMQKVADLLPRDL--RLMLL-VQGDQ---PRQRLLEKHKKRVDEGEGSV 588 (697)
T ss_pred HHHHHHHHHHHHh-c----CCCEEEEeCcHHHHHHHHHHHHHhc--CCcEE-EeCCc---hHHHHHHHHHHHhccCCCeE
Confidence 3455555555443 1 4568999999999999998887532 23333 35642 46778877764 67789
Q ss_pred EEeccccccccCCCC--ccEEEEecCCC----Ch--------------------------hhHHhhhcccccCCCCceEE
Q psy15524 714 LICTDVAARGLDLPL--VDWIVQYTAPS----SS--------------------------TDYVHRVGRTARVGHEGSSL 761 (930)
Q Consensus 714 Lv~T~~~~~GlDip~--v~~VI~~~~p~----s~--------------------------~~y~qr~GRagR~g~~g~~~ 761 (930)
|++|..+++|||+|+ +++||....|. ++ ..+.|-+||.-|...+-..+
T Consensus 589 L~g~~sf~EGVD~pGd~l~~vII~kLPF~~p~dp~~~ar~~~~~~~g~~~F~~~~lP~A~~kl~Qg~GRlIRs~~D~G~i 668 (697)
T PRK11747 589 LFGLQSFAEGLDLPGDYLTQVIITKIPFAVPDSPVEATLAEWLKSRGGNPFMEISVPDASFKLIQAVGRLIRSEQDRGRV 668 (697)
T ss_pred EEEeccccccccCCCCceEEEEEEcCCCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhccccccCCceEEE
Confidence 999999999999986 67888877663 11 13468889999987664455
Q ss_pred EEeCcc
Q psy15524 762 LFLIPS 767 (930)
Q Consensus 762 ~~~~~~ 767 (930)
+++.++
T Consensus 669 ~ilD~R 674 (697)
T PRK11747 669 TILDRR 674 (697)
T ss_pred EEEccc
Confidence 555543
|
|
| >COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.45 E-value=3.6e-13 Score=155.82 Aligned_cols=170 Identities=22% Similarity=0.274 Sum_probs=133.2
Q ss_pred ccCcHHHHHHHHHhhcC----CcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHH
Q psy15524 4 TQVTTVQQLSIQPILDG----GDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTK 79 (930)
Q Consensus 4 ~~l~~~Q~~ai~~~~~g----~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~ 79 (930)
..+++.|+.|+..+.+. ...|+.+.||||||.+|+-.+.+.+.. |.++|+|+|.++|..|+.++|+.
T Consensus 197 ~~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~~---------GkqvLvLVPEI~Ltpq~~~rf~~ 267 (730)
T COG1198 197 LALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVLAQ---------GKQVLVLVPEIALTPQLLARFKA 267 (730)
T ss_pred cccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHHHHc---------CCEEEEEeccccchHHHHHHHHH
Confidence 46899999999998765 569999999999999999988888765 66799999999999999999999
Q ss_pred HhhhcCCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccc---cCcHHHHHH
Q psy15524 80 LCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILD---QGYERDIAE 156 (930)
Q Consensus 80 ~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~---~~~~~~~~~ 156 (930)
.+..-..+.++.++.+.....|.+...+..+|+||| ++.-+.++.++++|||||-|.-.- ++.+... +
T Consensus 268 rFg~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGt--------RSAlF~Pf~~LGLIIvDEEHD~sYKq~~~prYhA-R 338 (730)
T COG1198 268 RFGAKVAVLHSGLSPGERYRVWRRARRGEARVVIGT--------RSALFLPFKNLGLIIVDEEHDSSYKQEDGPRYHA-R 338 (730)
T ss_pred HhCCChhhhcccCChHHHHHHHHHHhcCCceEEEEe--------chhhcCchhhccEEEEeccccccccCCcCCCcCH-H
Confidence 988655567777777777888888888889999999 555566799999999999996432 1222121 2
Q ss_pred HHHHHhhcCCCceEEEEEeecCCCccccccccccc
Q psy15524 157 FLEILKKQKPQFQSILLSATLTPATCWCKHTETLK 191 (930)
Q Consensus 157 i~~~l~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~ 191 (930)
=+..++....++++|+-||||+-++......+...
T Consensus 339 dvA~~Ra~~~~~pvvLgSATPSLES~~~~~~g~y~ 373 (730)
T COG1198 339 DVAVLRAKKENAPVVLGSATPSLESYANAESGKYK 373 (730)
T ss_pred HHHHHHHHHhCCCEEEecCCCCHHHHHhhhcCceE
Confidence 23334444567789999999998876665444333
|
|
| >PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=2e-12 Score=159.10 Aligned_cols=160 Identities=17% Similarity=0.159 Sum_probs=103.1
Q ss_pred cCcHHHHHHHHHhh----cC-CcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHH
Q psy15524 5 QVTTVQQLSIQPIL----DG-GDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTK 79 (930)
Q Consensus 5 ~l~~~Q~~ai~~~~----~g-~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~ 79 (930)
.|+++|.+||.++. .| ++.|+++|||||||.+++..+ ..+... ....++|||+|+++|+.|..+.|..
T Consensus 413 ~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~tai~li-~~L~~~------~~~~rVLfLvDR~~L~~Qa~~~F~~ 485 (1123)
T PRK11448 413 GLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTAIALM-YRLLKA------KRFRRILFLVDRSALGEQAEDAFKD 485 (1123)
T ss_pred CCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHHHH-HHHHhc------CccCeEEEEecHHHHHHHHHHHHHh
Confidence 58999999998775 23 579999999999999855444 444331 2235799999999999999999988
Q ss_pred HhhhcCCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcC----CCccCCCccEEEEcccccccc------c-
Q psy15524 80 LCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHT----ETLKFSKVEHLVLDEADRILD------Q- 148 (930)
Q Consensus 80 ~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~----~~~~l~~l~~vViDE~h~~~~------~- 148 (930)
...... ......++...... .......+|+|+|...+...+... ....+.++++|||||||+-.. .
T Consensus 486 ~~~~~~-~~~~~i~~i~~L~~--~~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDEaHRs~~~d~~~~~~ 562 (1123)
T PRK11448 486 TKIEGD-QTFASIYDIKGLED--KFPEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDEAHRGYTLDKEMSEG 562 (1123)
T ss_pred cccccc-cchhhhhchhhhhh--hcccCCCCEEEEEHHHHHHhhhccccccccCCCCcccEEEEECCCCCCccccccccc
Confidence 642211 01100111110010 112234789999999987764321 124568899999999998521 0
Q ss_pred --Cc------HHHHHHHHHHHhhcCCCceEEEEEeecCC
Q psy15524 149 --GY------ERDIAEFLEILKKQKPQFQSILLSATLTP 179 (930)
Q Consensus 149 --~~------~~~~~~i~~~l~~~~~~~~~i~lSAT~~~ 179 (930)
+| ...++.++... +...|||||||..
T Consensus 563 ~~~~~~~~~~~~~yr~iL~yF-----dA~~IGLTATP~r 596 (1123)
T PRK11448 563 ELQFRDQLDYVSKYRRVLDYF-----DAVKIGLTATPAL 596 (1123)
T ss_pred hhccchhhhHHHHHHHHHhhc-----CccEEEEecCCcc
Confidence 11 23444555432 3468999999964
|
|
| >COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] | Back alignment and domain information |
|---|
Probab=99.45 E-value=2.4e-12 Score=152.08 Aligned_cols=162 Identities=23% Similarity=0.267 Sum_probs=129.9
Q ss_pred CCCccCcHHHHHHHHHhhcC------CcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHH
Q psy15524 1 MNITQVTTVQQLSIQPILDG------GDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTL 74 (930)
Q Consensus 1 ~g~~~l~~~Q~~ai~~~~~g------~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~ 74 (930)
|+|+ -||-|..||..+.+. .|-|+|+--|-|||.+++-++...+.. |.+|.|||||--||+|-+
T Consensus 591 FPye-ET~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV~~---------GKQVAvLVPTTlLA~QHy 660 (1139)
T COG1197 591 FPYE-ETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAVMD---------GKQVAVLVPTTLLAQQHY 660 (1139)
T ss_pred CCCc-CCHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHHhcC---------CCeEEEEcccHHhHHHHH
Confidence 4564 699999999998753 489999999999999999988877743 788999999999999999
Q ss_pred HHHHHHhhhcCCceeEEeeCCCchHHHHHHh---c-CCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCc
Q psy15524 75 EIFTKLCKSFTWIVPSWLTGGEKMKSEKARI---R-KGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGY 150 (930)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l---~-~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~ 150 (930)
+.|++.+.+++ +++..++.=.+.+++...+ . +..||||||- .++. ..+.+++++++||||-|+..=
T Consensus 661 ~tFkeRF~~fP-V~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTH----rLL~--kdv~FkdLGLlIIDEEqRFGV--- 730 (1139)
T COG1197 661 ETFKERFAGFP-VRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTH----RLLS--KDVKFKDLGLLIIDEEQRFGV--- 730 (1139)
T ss_pred HHHHHHhcCCC-eeEEEecccCCHHHHHHHHHHHhcCCccEEEech----HhhC--CCcEEecCCeEEEechhhcCc---
Confidence 99999999988 7888777766666665443 3 4599999994 3333 567799999999999998641
Q ss_pred HHHHHHHHHHHhhcCCCceEEEEEeecCCCccccccc
Q psy15524 151 ERDIAEFLEILKKQKPQFQSILLSATLTPATCWCKHT 187 (930)
Q Consensus 151 ~~~~~~i~~~l~~~~~~~~~i~lSAT~~~~~~~~~~~ 187 (930)
.--++++..+.++.++-|||||-|++..+...
T Consensus 731 -----k~KEkLK~Lr~~VDvLTLSATPIPRTL~Msm~ 762 (1139)
T COG1197 731 -----KHKEKLKELRANVDVLTLSATPIPRTLNMSLS 762 (1139)
T ss_pred -----cHHHHHHHHhccCcEEEeeCCCCcchHHHHHh
Confidence 11345566667889999999999988766543
|
|
| >smart00490 HELICc helicase superfamily c-terminal domain | Back alignment and domain information |
|---|
Probab=99.45 E-value=2.8e-13 Score=115.80 Aligned_cols=80 Identities=46% Similarity=0.775 Sum_probs=74.1
Q ss_pred HHHHHhhhcCCCceEEEecCCCCHHHHHHHHHHhhcCCCcEEEeccccccccCCCCccEEEEecCCCChhhHHhhhcccc
Q psy15524 673 HTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTA 752 (930)
Q Consensus 673 ~~~~l~~~~~~~~~~~~lhg~~~~~~R~~v~~~F~~~~~~vLv~T~~~~~GlDip~v~~VI~~~~p~s~~~y~qr~GRag 752 (930)
+++.|... ++.+..+||+++..+|..+++.|.++...||++|+++++|+|+|++++||.+++|.+..+|.|++||++
T Consensus 3 l~~~l~~~---~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~~~~~~vi~~~~~~~~~~~~Q~~gR~~ 79 (82)
T smart00490 3 LAELLKEL---GIKVARLHGGLSQEEREEILEKFNNGKIKVLVATDVAERGLDLPGVDLVIIYDLPWSPASYIQRIGRAG 79 (82)
T ss_pred HHHHHHHC---CCeEEEEECCCCHHHHHHHHHHHHcCCCeEEEECChhhCCcChhcCCEEEEeCCCCCHHHHHHhhcccc
Confidence 45556554 678899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCC
Q psy15524 753 RVG 755 (930)
Q Consensus 753 R~g 755 (930)
|.|
T Consensus 80 R~g 82 (82)
T smart00490 80 RAG 82 (82)
T ss_pred cCC
Confidence 976
|
|
| >KOG0389|consensus | Back alignment and domain information |
|---|
Probab=99.44 E-value=5.8e-12 Score=140.52 Aligned_cols=140 Identities=18% Similarity=0.294 Sum_probs=113.6
Q ss_pred hhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHHHHHHHHHHhhcCCC--cE
Q psy15524 636 LRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSVKS--GV 713 (930)
Q Consensus 636 ~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~v~~~F~~~~~--~v 713 (930)
.|...|..+|..... .+.+++||..-..+.+.+...|..+ ++.+..+.|...-.+|..+++.|...+. -+
T Consensus 761 gK~r~L~~LLp~~k~-----~G~RVLiFSQFTqmLDILE~~L~~l---~~~ylRLDGsTqV~~RQ~lId~Fn~d~difVF 832 (941)
T KOG0389|consen 761 GKCRKLKELLPKIKK-----KGDRVLIFSQFTQMLDILEVVLDTL---GYKYLRLDGSTQVNDRQDLIDEFNTDKDIFVF 832 (941)
T ss_pred hhHhHHHHHHHHHhh-----cCCEEEEeeHHHHHHHHHHHHHHhc---CceEEeecCCccchHHHHHHHhhccCCceEEE
Confidence 455555555544322 2689999999999999998888876 8999999999999999999999987653 36
Q ss_pred EEeccccccccCCCCccEEEEecCCCChhhHHhhhcccccCCCCc--eEEEEeCcccHH-HHHHHHhcCCccc
Q psy15524 714 LICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEG--SSLLFLIPSEVK-LVEELQNRRIRIE 783 (930)
Q Consensus 714 Lv~T~~~~~GlDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~g--~~~~~~~~~e~~-~~~~l~~~~~~~~ 783 (930)
|++|.+.+-|||+.+.++||.+|+..+|-+-.|.--||.|.|+.. ..+-+++.+-.+ .+.++.+.++.++
T Consensus 833 LLSTKAGG~GINLt~An~VIihD~dFNP~dD~QAEDRcHRvGQtkpVtV~rLItk~TIEE~I~~lA~~KL~Le 905 (941)
T KOG0389|consen 833 LLSTKAGGFGINLTCANTVIIHDIDFNPYDDKQAEDRCHRVGQTKPVTVYRLITKSTIEEGILRLAKTKLALE 905 (941)
T ss_pred EEeeccCcceecccccceEEEeecCCCCcccchhHHHHHhhCCcceeEEEEEEecCcHHHHHHHHHHHhhhhh
Confidence 899999999999999999999999999999999999999999854 445566666553 6777777766554
|
|
| >PRK14873 primosome assembly protein PriA; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=7.2e-12 Score=146.31 Aligned_cols=135 Identities=13% Similarity=0.066 Sum_probs=91.3
Q ss_pred cCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHHHHhhccCCCcceEEEeCCCch---HHHHHH
Q psy15524 437 QTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKM---KSEKAR 513 (930)
Q Consensus 437 ~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~---~~~~~~ 513 (930)
.+|||||.+|+-.+-+.+.. |..+||++|...|..|+.+.|+..+.. . .+..+.++.+. ...+..
T Consensus 168 ~~GSGKTevyl~~i~~~l~~---------Gk~vLvLvPEi~lt~q~~~rl~~~f~~--~-~v~~lhS~l~~~~R~~~w~~ 235 (665)
T PRK14873 168 LPGEDWARRLAAAAAATLRA---------GRGALVVVPDQRDVDRLEAALRALLGA--G-DVAVLSAGLGPADRYRRWLA 235 (665)
T ss_pred CCCCcHHHHHHHHHHHHHHc---------CCeEEEEecchhhHHHHHHHHHHHcCC--C-cEEEECCCCCHHHHHHHHHH
Confidence 35999999988877776654 778999999999999999999987741 1 23334444332 223344
Q ss_pred HhcC-CcEEEECchhHHHhhhccCCcccccceEEEEecchhhhhcC------cHHHHHHHHHHHhhcCccceEEEEcccc
Q psy15524 514 IRKG-ISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQG------YERDIAEFLEILKKQKPQFQSILLSATL 586 (930)
Q Consensus 514 ~~~~-~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~l~~~g------~~~~l~~i~~~l~~~~~~~q~vl~SAT~ 586 (930)
+..| ..|+|+|- +.-...+.++.+||+||-|.-.-.. ...++....... .+..+++.|||+
T Consensus 236 ~~~G~~~IViGtR--------SAvFaP~~~LgLIIvdEEhd~sykq~~~p~yhaRdvA~~Ra~~----~~~~lvLgSaTP 303 (665)
T PRK14873 236 VLRGQARVVVGTR--------SAVFAPVEDLGLVAIWDDGDDLLAEPRAPYPHAREVALLRAHQ----HGCALLIGGHAR 303 (665)
T ss_pred HhCCCCcEEEEcc--------eeEEeccCCCCEEEEEcCCchhhcCCCCCCccHHHHHHHHHHH----cCCcEEEECCCC
Confidence 4444 78999993 3223468899999999999543211 113344333333 378899999999
Q ss_pred CHHHHHHHh
Q psy15524 587 TPAVQRLAG 595 (930)
Q Consensus 587 ~~~~~~l~~ 595 (930)
+-+....+.
T Consensus 304 Sles~~~~~ 312 (665)
T PRK14873 304 TAEAQALVE 312 (665)
T ss_pred CHHHHHHHh
Confidence 866554443
|
|
| >KOG1000|consensus | Back alignment and domain information |
|---|
Probab=99.42 E-value=4.6e-11 Score=126.53 Aligned_cols=322 Identities=17% Similarity=0.221 Sum_probs=198.8
Q ss_pred CCCHHHHHhHHhhh-cCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHHHHhhcc
Q psy15524 414 QVTTVQQLSIQPIL-DGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKS 492 (930)
Q Consensus 414 ~~~~iQ~~~i~~il-~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~ 492 (930)
.+.|+|.+.+...+ .|..+++.-..|-|||+.++ ++...... ....||+||. .|-..|.+.+..++..
T Consensus 198 ~LlPFQreGv~faL~RgGR~llADeMGLGKTiQAl-aIA~yyra---------EwplliVcPA-svrftWa~al~r~lps 266 (689)
T KOG1000|consen 198 RLLPFQREGVIFALERGGRILLADEMGLGKTIQAL-AIARYYRA---------EWPLLIVCPA-SVRFTWAKALNRFLPS 266 (689)
T ss_pred hhCchhhhhHHHHHhcCCeEEEecccccchHHHHH-HHHHHHhh---------cCcEEEEecH-HHhHHHHHHHHHhccc
Confidence 34578999888766 46679999999999999743 33333322 2237899996 6777788888888764
Q ss_pred CCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhccCCcccccceEEEEecchhhhhcCcHHHHHHHHHHHhh
Q psy15524 493 FTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKK 572 (930)
Q Consensus 493 ~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~l~~~g~~~~l~~i~~~l~~ 572 (930)
... ..++.++.+.... +.....|.|.+.+.+..+ .. .+....+.++|+||.|.+-+.. ......++..+..
T Consensus 267 ~~p--i~vv~~~~D~~~~---~~t~~~v~ivSye~ls~l-~~--~l~~~~~~vvI~DEsH~Lk~sk-tkr~Ka~~dllk~ 337 (689)
T KOG1000|consen 267 IHP--IFVVDKSSDPLPD---VCTSNTVAIVSYEQLSLL-HD--ILKKEKYRVVIFDESHMLKDSK-TKRTKAATDLLKV 337 (689)
T ss_pred ccc--eEEEecccCCccc---cccCCeEEEEEHHHHHHH-HH--HHhcccceEEEEechhhhhccc-hhhhhhhhhHHHH
Confidence 433 2334444433221 122346888887766433 22 2334558999999999775443 3334444444443
Q ss_pred cCccceEEEEccccCH-------------------HHHHHHhhhcCC---CEEEEccCCCCcccC---------------
Q psy15524 573 QKPQFQSILLSATLTP-------------------AVQRLAGMTLQN---PIQIDAADSTDIHNT--------------- 615 (930)
Q Consensus 573 ~~~~~q~vl~SAT~~~-------------------~~~~l~~~~~~~---~~~i~~~~~~~~~~~--------------- 615 (930)
-.+++++|.|+.- ...+++..+... +...+..+.......
T Consensus 338 ---akhvILLSGTPavSRP~elytqi~avd~tlfp~f~efa~rYCd~k~vr~~~Dykg~tnl~EL~~lL~k~lMIRRlK~ 414 (689)
T KOG1000|consen 338 ---AKHVILLSGTPAVSRPSELYTQIRAVDHTLFPNFHEFAIRYCDGKQVRFCFDYKGCTNLEELAALLFKRLMIRRLKA 414 (689)
T ss_pred ---hhheEEecCCcccCCchhhhhhhhhhcccccccHHHHHHHhcCccccceeeecCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 4578999999631 111222222111 111121111110000
Q ss_pred ccceecCCCceEEEEEcCch-------------------------------------hhHHHHHHHHHhhccCCCcCCCc
Q psy15524 616 TDSLVIPDSLKQHFIVTPPK-------------------------------------LRLVALASFILGKCQNVNEDEES 658 (930)
Q Consensus 616 ~~~~~~~~~~~~~~~~~~~~-------------------------------------~~~~~l~~~l~~~~~~~~~~~~~ 658 (930)
.--...|..-++..+.+... .|.....+.+..+.- ....++.
T Consensus 415 dvL~qLPpKrr~Vv~~~~gr~da~~~~lv~~a~~~t~~~~~e~~~~~l~l~y~~tgiaK~~av~eyi~~~~~-l~d~~~~ 493 (689)
T KOG1000|consen 415 DVLKQLPPKRREVVYVSGGRIDARMDDLVKAAADYTKVNSMERKHESLLLFYSLTGIAKAAAVCEYILENYF-LPDAPPR 493 (689)
T ss_pred HHHhhCCccceEEEEEcCCccchHHHHHHHHhhhcchhhhhhhhhHHHHHHHHHhcccccHHHHHHHHhCcc-cccCCCc
Confidence 00001233322222222111 011112222221100 1234578
Q ss_pred eEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHHHHHHHHHHhhcCC-CcE-EEeccccccccCCCCccEEEEec
Q psy15524 659 KMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSVK-SGV-LICTDVAARGLDLPLVDWIVQYT 736 (930)
Q Consensus 659 k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~v~~~F~~~~-~~v-Lv~T~~~~~GlDip~v~~VI~~~ 736 (930)
|.+||+......+-+...+.+. +++...+.|..+..+|....+.|+.++ .+| +++-.+++.|+++.+.+.|+...
T Consensus 494 KflVFaHH~~vLd~Iq~~~~~r---~vg~IRIDGst~s~~R~ll~qsFQ~seev~VAvlsItA~gvGLt~tAa~~VVFaE 570 (689)
T KOG1000|consen 494 KFLVFAHHQIVLDTIQVEVNKR---KVGSIRIDGSTPSHRRTLLCQSFQTSEEVRVAVLSITAAGVGLTLTAASVVVFAE 570 (689)
T ss_pred eEEEEehhHHHHHHHHHHHHHc---CCCeEEecCCCCchhHHHHHHHhccccceEEEEEEEeecccceeeeccceEEEEE
Confidence 9999999999999888888874 899999999999999999999999653 443 56667889999999999999999
Q ss_pred CCCChhhHHhhhcccccCCCCceEEE
Q psy15524 737 APSSSTDYVHRVGRTARVGHEGSSLL 762 (930)
Q Consensus 737 ~p~s~~~y~qr~GRagR~g~~g~~~~ 762 (930)
.++++.-.+|-=-|+.|.|+.....+
T Consensus 571 L~wnPgvLlQAEDRaHRiGQkssV~v 596 (689)
T KOG1000|consen 571 LHWNPGVLLQAEDRAHRIGQKSSVFV 596 (689)
T ss_pred ecCCCceEEechhhhhhccccceeeE
Confidence 99999999999999999998655433
|
|
| >TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3 | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.1e-11 Score=145.43 Aligned_cols=345 Identities=21% Similarity=0.231 Sum_probs=189.4
Q ss_pred CCCHHHHHhHHhhhc----CCc----EEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHH
Q psy15524 414 QVTTVQQLSIQPILD----GGD----VLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEI 485 (930)
Q Consensus 414 ~~~~iQ~~~i~~il~----~~d----~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~ 485 (930)
.-..+|-+|...+.. ..+ ++--|.||+|||++=. -|+..|.. ...|.+..|-.-.|.|-.|+-+.
T Consensus 408 ~rF~WQdkA~d~a~~~r~~~~~~GfF~vNMASTGcGKT~aNA-RImyaLsd------~~~g~RfsiALGLRTLTLQTGda 480 (1110)
T TIGR02562 408 PRFRWQNKAFNLAQKLRQKSPEQGAFGVNMASTGCGKTLANA-RAMYALRD------DKQGARFAIALGLRSLTLQTGHA 480 (1110)
T ss_pred CCcchHHHHHHHHHHHHhhcccCCeEEEEecCCCcchHHHHH-HHHHHhCC------CCCCceEEEEccccceeccchHH
Confidence 345789999888764 222 5668999999999733 23333322 24577888888889999998888
Q ss_pred HHHhhccCCCcceEEEeCCCchHHH-------------------------------------------HHHHh-------
Q psy15524 486 FTKLCKSFTWIVPSWLTGGEKMKSE-------------------------------------------KARIR------- 515 (930)
Q Consensus 486 ~~~~~~~~~~~~~~~~~gg~~~~~~-------------------------------------------~~~~~------- 515 (930)
+++.++- ......+++||...... ...+.
T Consensus 481 ~r~rL~L-~~ddLAVlIGs~Av~~L~e~~~~~~~~~~~~GSeS~e~l~~e~~~~~~~~~~g~l~~~~l~~~l~~~~k~~r 559 (1110)
T TIGR02562 481 LKTRLNL-SDDDLAVLIGGTAVQTLFDLSKEKIEQVDEDGSESAPIFLAEGQDCNLPDWDGPLDTIELLGRLSLDDKEKT 559 (1110)
T ss_pred HHHhcCC-CccceEEEECHHHHHHHHHHHhhhccccccCCCccchhhhcccCcCCeeeccCCccchhhhhhhccChhhhh
Confidence 8776532 22223333443211100 00000
Q ss_pred -cCCcEEEECchhHHHhhhccC--Ccccc--c--ceEEEEecchhhhhcCcHHHHHHHHHHHhhcCccceEEEEccccCH
Q psy15524 516 -KGISILVATPGRLLDHCKHTE--TLKFS--K--VEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTP 588 (930)
Q Consensus 516 -~~~~Ilv~Tp~rl~~~l~~~~--~~~~~--~--l~~lVlDEah~l~~~g~~~~l~~i~~~l~~~~~~~q~vl~SAT~~~ 588 (930)
-...++|||+..++-...... ...+. . =+.|||||+|.+-... ...+.++++.+... +.+++++|||+|+
T Consensus 560 ll~apv~V~TIDQlL~a~~~~r~~~~~l~ll~La~svlVlDEVHaYD~~~-~~~L~rlL~w~~~l--G~~VlLmSATLP~ 636 (1110)
T TIGR02562 560 LLAAPVLVCTIDHLIPATESHRGGHHIAPMLRLMSSDLILDEPDDYEPED-LPALLRLVQLAGLL--GSRVLLSSATLPP 636 (1110)
T ss_pred hhcCCeEEecHHHHHHHhhhcccchhHHHHHHhcCCCEEEECCccCCHHH-HHHHHHHHHHHHHc--CCCEEEEeCCCCH
Confidence 024699999999876653211 11111 1 2469999999774333 24455555544432 6789999999998
Q ss_pred HHHH-HHhhh----------cC---CCEEEE--ccCCCCc-----ccC--------------ccce-ecCCCceEEEEEc
Q psy15524 589 AVQR-LAGMT----------LQ---NPIQID--AADSTDI-----HNT--------------TDSL-VIPDSLKQHFIVT 632 (930)
Q Consensus 589 ~~~~-l~~~~----------~~---~~~~i~--~~~~~~~-----~~~--------------~~~~-~~~~~~~~~~~~~ 632 (930)
.+.. +...+ .. .+..|. ..++... ... .... .-|..-.-..+.+
T Consensus 637 ~l~~~L~~Ay~~G~~~~q~~~g~~~~~~~i~CaW~DE~~~~~~~~~~~~~F~~~H~~Fv~~R~~~L~~~p~~R~a~i~~~ 716 (1110)
T TIGR02562 637 ALVKTLFRAYEAGRQMYQALYGQPKKPLNICCAWVDEPQVWQADCNQKSEFIQRHQDFLRDRAVQLAKKPVRRLAELLSL 716 (1110)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCcceeEEeecccCchhhhhcCHHHHHHHHHHHHHHHHHHHhcCcccceEEEeec
Confidence 7433 22222 11 122111 1111000 000 0000 0111111122222
Q ss_pred Cch-----hhHHHHHHHHHh-----hccCCCcC--CCceE---EEEecchhhHHHHHHHHhhhcC-C--CceEEEecCCC
Q psy15524 633 PPK-----LRLVALASFILG-----KCQNVNED--EESKM---LVFMATQDMADYHTELLSTVLG-E--NIAFFKLHGSM 694 (930)
Q Consensus 633 ~~~-----~~~~~l~~~l~~-----~~~~~~~~--~~~k~---iVF~~s~~~~~~~~~~l~~~~~-~--~~~~~~lhg~~ 694 (930)
+.. .....+...+.+ +....... .++++ +|-+++++.+-.++..|-.... . .+.++.||+..
T Consensus 717 ~~~~~~~~~~~~~~a~~i~~~~~~LH~~h~~~~~~sgk~VSfGliR~anI~p~V~~A~~L~~~~~~~~~~i~~~~yHSr~ 796 (1110)
T TIGR02562 717 SSLPRENESTYLALAQSLLEGALRLHQAHAQTDPKSEKKVSVGLIRVANIDPLIRLAQFLYALLAEEKYQIHLCCYHAQD 796 (1110)
T ss_pred CCcccchhHHHHHHHHHHHHHHHHHHHHhCccCCCCCeEEEEEEEEEcCchHHHHHHHHHHhhccccCCceeEEEecccC
Confidence 222 122223332221 11111111 12332 5666666666555555544332 2 35688899999
Q ss_pred CHHHHHHHHHHh----------------------hc----CCCcEEEeccccccccCCCCccEEEEecCCCChhhHHhhh
Q psy15524 695 SQSERTEVFKTF----------------------RS----VKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRV 748 (930)
Q Consensus 695 ~~~~R~~v~~~F----------------------~~----~~~~vLv~T~~~~~GlDip~v~~VI~~~~p~s~~~y~qr~ 748 (930)
....|..+++.. .+ +...|+|+|++.+.|+|+ +.+++| .-|.+....+||.
T Consensus 797 ~l~~Rs~~E~~Ld~~L~R~~~~~~~~~~~i~~~l~~~~~~~~~~i~v~Tqv~E~g~D~-dfd~~~--~~~~~~~sliQ~a 873 (1110)
T TIGR02562 797 PLLLRSYIERRLDQLLTRHKPEQLFQDDEIIDLMQNSPALNHLFIVLATPVEEVGRDH-DYDWAI--ADPSSMRSIIQLA 873 (1110)
T ss_pred hHHHHHHHHHHHHHHhcccChhhhhchHHHHHHHhcccccCCCeEEEEeeeEEEEecc-cCCeee--eccCcHHHHHHHh
Confidence 888888777553 11 356799999999999998 466655 3466789999999
Q ss_pred cccccCCC--CceEEEEeCcccHHHH
Q psy15524 749 GRTARVGH--EGSSLLFLIPSEVKLV 772 (930)
Q Consensus 749 GRagR~g~--~g~~~~~~~~~e~~~~ 772 (930)
||+.|.|. .+..-+++...+...+
T Consensus 874 GR~~R~~~~~~~~~N~~i~~~N~r~l 899 (1110)
T TIGR02562 874 GRVNRHRLEKVQQPNIVILQWNYRYL 899 (1110)
T ss_pred hcccccccCCCCCCcEEEeHhHHHHh
Confidence 99999876 2444556666666555
|
The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc. |
| >COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.1e-11 Score=123.82 Aligned_cols=145 Identities=23% Similarity=0.245 Sum_probs=106.5
Q ss_pred cCcHHHHHHHHHhh----cCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHH
Q psy15524 5 QVTTVQQLSIQPIL----DGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKL 80 (930)
Q Consensus 5 ~l~~~Q~~ai~~~~----~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~ 80 (930)
+|+|.|+.+-..++ ..+++|++|-||+|||....-.+.+.+. .|..+.+.+|....|.+++.+++..
T Consensus 97 ~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEMif~~i~~al~---------~G~~vciASPRvDVclEl~~Rlk~a 167 (441)
T COG4098 97 TLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEMIFQGIEQALN---------QGGRVCIASPRVDVCLELYPRLKQA 167 (441)
T ss_pred ccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhhhHHHHHHHHh---------cCCeEEEecCcccchHHHHHHHHHh
Confidence 68999999887755 4679999999999999985555555543 3778999999999999999999998
Q ss_pred hhhcCCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCcHHHHHHHHHH
Q psy15524 81 CKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEI 160 (930)
Q Consensus 81 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~~~~~~~i~~~ 160 (930)
+.. ..+.+++|+...... .+++|+|..+|+.+-. .++++||||+|...-.. .+.+...+..
T Consensus 168 F~~---~~I~~Lyg~S~~~fr-------~plvVaTtHQLlrFk~--------aFD~liIDEVDAFP~~~-d~~L~~Av~~ 228 (441)
T COG4098 168 FSN---CDIDLLYGDSDSYFR-------APLVVATTHQLLRFKQ--------AFDLLIIDEVDAFPFSD-DQSLQYAVKK 228 (441)
T ss_pred hcc---CCeeeEecCCchhcc-------ccEEEEehHHHHHHHh--------hccEEEEeccccccccC-CHHHHHHHHH
Confidence 765 446678887754422 5799999998887754 48999999999764211 1223333332
Q ss_pred HhhcCCCceEEEEEeecCC
Q psy15524 161 LKKQKPQFQSILLSATLTP 179 (930)
Q Consensus 161 l~~~~~~~~~i~lSAT~~~ 179 (930)
.+ ...-..|.+|||++.
T Consensus 229 ar--k~~g~~IylTATp~k 245 (441)
T COG4098 229 AR--KKEGATIYLTATPTK 245 (441)
T ss_pred hh--cccCceEEEecCChH
Confidence 22 223468899999864
|
|
| >TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.4e-11 Score=148.87 Aligned_cols=148 Identities=21% Similarity=0.224 Sum_probs=89.8
Q ss_pred HHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHHhhhcCCceeEE
Q psy15524 12 LSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSW 91 (930)
Q Consensus 12 ~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~ 91 (930)
+.+..+..+..++++|+||||||. .+|.+-.- . . .....++++.-|.+--|..+++++.+....-....++.
T Consensus 74 ~Il~~l~~~~vvii~g~TGSGKTT--qlPq~lle-~-~----~~~~~~I~~tQPRRlAA~svA~RvA~elg~~lG~~VGY 145 (1283)
T TIGR01967 74 DIAEAIAENQVVIIAGETGSGKTT--QLPKICLE-L-G----RGSHGLIGHTQPRRLAARTVAQRIAEELGTPLGEKVGY 145 (1283)
T ss_pred HHHHHHHhCceEEEeCCCCCCcHH--HHHHHHHH-c-C----CCCCceEecCCccHHHHHHHHHHHHHHhCCCcceEEee
Confidence 444555566778999999999999 45644221 1 1 11123566777988888888877666543211122222
Q ss_pred eeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccc-cccccCcHHHHHHHHHHHhhcCCCceE
Q psy15524 92 LTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEAD-RILDQGYERDIAEFLEILKKQKPQFQS 170 (930)
Q Consensus 92 ~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h-~~~~~~~~~~~~~i~~~l~~~~~~~~~ 170 (930)
-...++ . .....+|.++||++|+..+... -.+.++++|||||+| +.++.++.-. ++..+-...++.++
T Consensus 146 ~vR~~~---~---~s~~T~I~~~TdGiLLr~l~~d--~~L~~~~~IIIDEaHERsL~~D~LL~---lLk~il~~rpdLKl 214 (1283)
T TIGR01967 146 KVRFHD---Q---VSSNTLVKLMTDGILLAETQQD--RFLSRYDTIIIDEAHERSLNIDFLLG---YLKQLLPRRPDLKI 214 (1283)
T ss_pred EEcCCc---c---cCCCceeeeccccHHHHHhhhC--cccccCcEEEEcCcchhhccchhHHH---HHHHHHhhCCCCeE
Confidence 111111 1 2345789999999999988653 247899999999999 4777665432 12222222345566
Q ss_pred EEEEeecC
Q psy15524 171 ILLSATLT 178 (930)
Q Consensus 171 i~lSAT~~ 178 (930)
|++|||++
T Consensus 215 IlmSATld 222 (1283)
T TIGR01967 215 IITSATID 222 (1283)
T ss_pred EEEeCCcC
Confidence 66666663
|
This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing. |
| >TIGR00604 rad3 DNA repair helicase (rad3) | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.7e-10 Score=137.28 Aligned_cols=75 Identities=19% Similarity=0.196 Sum_probs=61.2
Q ss_pred cCCCCCCCHHHHHhHHhhh----cCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHH
Q psy15524 409 GMNITQVTTVQQLSIQPIL----DGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLE 484 (930)
Q Consensus 409 ~~~~~~~~~iQ~~~i~~il----~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~ 484 (930)
.|.|..++|.|.+.+..+. .++++++.||||+|||++.+.|++...... +...+++|.+.|..=..|..+
T Consensus 5 ~FPy~~~y~~Q~~~m~~v~~~l~~~~~~llEsPTGtGKTlslL~~aL~~~~~~------~~~~kIiy~sRThsQl~q~i~ 78 (705)
T TIGR00604 5 YFPYEKIYPEQRSYMRDLKRSLDRGDEAILEMPSGTGKTISLLSLILAYQQEK------PEVRKIIYASRTHSQLEQATE 78 (705)
T ss_pred ecCCCCCCHHHHHHHHHHHHHhccCCceEEeCCCCCCccHHHHHHHHHHHHhc------cccccEEEEcccchHHHHHHH
Confidence 4788888999998776655 578899999999999999999999876542 223678999999988888888
Q ss_pred HHHHh
Q psy15524 485 IFTKL 489 (930)
Q Consensus 485 ~~~~~ 489 (930)
++++.
T Consensus 79 Elk~~ 83 (705)
T TIGR00604 79 ELRKL 83 (705)
T ss_pred HHHhh
Confidence 88874
|
All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >KOG0384|consensus | Back alignment and domain information |
|---|
Probab=99.35 E-value=9.1e-12 Score=145.20 Aligned_cols=340 Identities=17% Similarity=0.232 Sum_probs=203.8
Q ss_pred CCCCHHHHHhHHhhh----cCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHHHH
Q psy15524 413 TQVTTVQQLSIQPIL----DGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTK 488 (930)
Q Consensus 413 ~~~~~iQ~~~i~~il----~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~ 488 (930)
.+++.+|-..++.++ .++++|+.-..|-|||+. .+..|..+.... .-.|+ .|||+|.-. +.-|.+.|..
T Consensus 369 ~~LRdyQLeGlNWl~~~W~~~~n~ILADEmgLgktvq-ti~fl~~l~~~~----~~~gp-flvvvplst-~~~W~~ef~~ 441 (1373)
T KOG0384|consen 369 NELRDYQLEGLNWLLYSWYKRNNCILADEMGLGKTVQ-TITFLSYLFHSL----QIHGP-FLVVVPLST-ITAWEREFET 441 (1373)
T ss_pred chhhhhhcccchhHHHHHHhcccceehhhcCCCcchH-HHHHHHHHHHhh----hccCC-eEEEeehhh-hHHHHHHHHH
Confidence 578889998887765 578899999999999985 333333333211 01244 688889744 4457777777
Q ss_pred hhccCCCcceEEEeCCCchHHHHHHH----hc-----CCcEEEECchhHHHhhhccCCcccccceEEEEecchhhhhcCc
Q psy15524 489 LCKSFTWIVPSWLTGGEKMKSEKARI----RK-----GISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGY 559 (930)
Q Consensus 489 ~~~~~~~~~~~~~~gg~~~~~~~~~~----~~-----~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~l~~~g~ 559 (930)
+. .+ .+.+..|....+...+.. .. ..+++++|.+.++.-... +.--...++++|||||+-+..
T Consensus 442 w~-~m---n~i~y~g~~~sr~~i~~ye~~~~~~~~~lkf~~lltTye~~LkDk~~---L~~i~w~~~~vDeahrLkN~~- 513 (1373)
T KOG0384|consen 442 WT-DM---NVIVYHGNLESRQLIRQYEFYHSSNTKKLKFNALLTTYEIVLKDKAE---LSKIPWRYLLVDEAHRLKNDE- 513 (1373)
T ss_pred Hh-hh---ceeeeecchhHHHHHHHHHheecCCccccccceeehhhHHHhccHhh---hccCCcceeeecHHhhcCchH-
Confidence 66 33 233445544333322221 11 378999998877543222 222346789999999996432
Q ss_pred HHHHHHHHHHHhhcCccceEEEEccccC-HHHHHHHhhh-cCCC------------------------------------
Q psy15524 560 ERDIAEFLEILKKQKPQFQSILLSATLT-PAVQRLAGMT-LQNP------------------------------------ 601 (930)
Q Consensus 560 ~~~l~~i~~~l~~~~~~~q~vl~SAT~~-~~~~~l~~~~-~~~~------------------------------------ 601 (930)
..+...+..+. .-..+++|.|+- +.+.+|.... +-.|
T Consensus 514 -~~l~~~l~~f~----~~~rllitgTPlQNsikEL~sLl~Fl~P~kf~~~~~f~~~~~~~~e~~~~~L~~~L~P~~lRr~ 588 (1373)
T KOG0384|consen 514 -SKLYESLNQFK----MNHRLLITGTPLQNSLKELWSLLHFLMPGKFDSWDEFLEEFDEETEEQVRKLQQILKPFLLRRL 588 (1373)
T ss_pred -HHHHHHHHHhc----ccceeeecCCCccccHHHHHHHhcccCCCCCCcHHHHHHhhcchhHHHHHHHHHHhhHHHHHHH
Confidence 22222233332 223477788853 2233332211 0000
Q ss_pred ------------EE-EEccCC--------------------CCcccCccce----ecCCCceEEEEEcCchhhH------
Q psy15524 602 ------------IQ-IDAADS--------------------TDIHNTTDSL----VIPDSLKQHFIVTPPKLRL------ 638 (930)
Q Consensus 602 ------------~~-i~~~~~--------------------~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~------ 638 (930)
.. +.+.-. .........+ -...--.+.|.+-+.+.+.
T Consensus 589 kkdvekslp~k~E~IlrVels~lQk~yYk~ILtkN~~~LtKG~~g~~~~lLNimmELkKccNHpyLi~gaee~~~~~~~~ 668 (1373)
T KOG0384|consen 589 KKDVEKSLPPKEETILRVELSDLQKQYYKAILTKNFSALTKGAKGSTPSLLNIMMELKKCCNHPYLIKGAEEKILGDFRD 668 (1373)
T ss_pred HhhhccCCCCCcceEEEeehhHHHHHHHHHHHHhhHHHHhccCCCCCchHHHHHHHHHHhcCCccccCcHHHHHHHhhhh
Confidence 00 000000 0000000000 0000011222222222111
Q ss_pred ----HHHHHHHHhh--------ccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHHHHHHHHHHh
Q psy15524 639 ----VALASFILGK--------CQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTF 706 (930)
Q Consensus 639 ----~~l~~~l~~~--------~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~v~~~F 706 (930)
..|..+|..- +-..-...+.+||||..-+.+.+.++++|... ++++-.|.|++..+-|+..++.|
T Consensus 669 ~~~d~~L~~lI~sSGKlVLLDKLL~rLk~~GHrVLIFSQMVRmLDIL~eYL~~r---~ypfQRLDGsvrgelRq~AIDhF 745 (1373)
T KOG0384|consen 669 KMRDEALQALIQSSGKLVLLDKLLPRLKEGGHRVLIFSQMVRMLDILAEYLSLR---GYPFQRLDGSVRGELRQQAIDHF 745 (1373)
T ss_pred cchHHHHHHHHHhcCcEEeHHHHHHHHhcCCceEEEhHHHHHHHHHHHHHHHHc---CCcceeccCCcchHHHHHHHHhc
Confidence 1222222110 00000124789999999999999999999874 89999999999999999999999
Q ss_pred hcC---CCcEEEeccccccccCCCCccEEEEecCCCChhhHHhhhcccccCCCCce--EEEEeCcc--cHHHHHHH
Q psy15524 707 RSV---KSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGS--SLLFLIPS--EVKLVEEL 775 (930)
Q Consensus 707 ~~~---~~~vLv~T~~~~~GlDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~g~--~~~~~~~~--e~~~~~~l 775 (930)
.+. ....|+||.+.+-|||+...+.||.||..++|..-+|-.-||.|.|+... .+-|++.. |.+++++-
T Consensus 746 nap~SddFvFLLSTRAGGLGINLatADTVIIFDSDWNPQNDLQAqARaHRIGQkk~VnVYRLVTk~TvEeEilERA 821 (1373)
T KOG0384|consen 746 NAPDSDDFVFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAQARAHRIGQKKHVNVYRLVTKNTVEEEILERA 821 (1373)
T ss_pred cCCCCCceEEEEecccCcccccccccceEEEeCCCCCcchHHHHHHHHHhhcccceEEEEEEecCCchHHHHHHHH
Confidence 854 45689999999999999999999999999999999999999999999754 45566654 33444443
|
|
| >PRK13107 preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.32 E-value=2e-11 Score=142.33 Aligned_cols=128 Identities=20% Similarity=0.189 Sum_probs=97.7
Q ss_pred CcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHHhhhcC
Q psy15524 6 VTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFT 85 (930)
Q Consensus 6 l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~ 85 (930)
|++.|-- ..+.-...-+..++||.|||++|.+|++..... |..+.||+|+..||.|..+.+..+...++
T Consensus 83 ~ydVQli--Ggl~L~~G~IaEm~TGEGKTL~a~lp~~l~al~---------g~~VhIvT~ndyLA~RD~e~m~~l~~~lG 151 (908)
T PRK13107 83 HFDVQLL--GGMVLDSNRIAEMRTGEGKTLTATLPAYLNALT---------GKGVHVITVNDYLARRDAENNRPLFEFLG 151 (908)
T ss_pred cCchHHh--cchHhcCCccccccCCCCchHHHHHHHHHHHhc---------CCCEEEEeCCHHHHHHHHHHHHHHHHhcC
Confidence 4555554 333333456999999999999999999877654 33499999999999999999999998877
Q ss_pred CceeEEeeCCCchHHHHHHhcCCCcEEEEChHHH-HHHHhcCCCcc-----CCCccEEEEcccccccc
Q psy15524 86 WIVPSWLTGGEKMKSEKARIRKGISILVATPGRL-LDHCKHTETLK-----FSKVEHLVLDEADRILD 147 (930)
Q Consensus 86 ~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l-~~~l~~~~~~~-----l~~l~~vViDE~h~~~~ 147 (930)
+.+++..++.+.... .-.-.+||++|||+.+ .++++..-.+. .+.+.+.||||+|.++-
T Consensus 152 -lsv~~i~~~~~~~~r--~~~Y~~dI~YgT~~e~gfDyLrdnm~~~~~~~vqr~~~~aIvDEvDsiLi 216 (908)
T PRK13107 152 -LTVGINVAGLGQQEK--KAAYNADITYGTNNEFGFDYLRDNMAFSPQERVQRPLHYALIDEVDSILI 216 (908)
T ss_pred -CeEEEecCCCCHHHH--HhcCCCCeEEeCCCcccchhhhccCccchhhhhccccceeeecchhhhcc
Confidence 788888887665322 2223689999999999 78776531223 37899999999998764
|
|
| >PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ] | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.8e-09 Score=118.30 Aligned_cols=302 Identities=18% Similarity=0.163 Sum_probs=205.1
Q ss_pred CeeEEEEccCHHHHHHHHHHHHHhhccC-------------CCc----ceEE-EeCCCchHHHHHHHhc-----------
Q psy15524 466 GIYAVIILPTRELALQTLEIFTKLCKSF-------------TWI----VPSW-LTGGEKMKSEKARIRK----------- 516 (930)
Q Consensus 466 ~~~~lil~PtreLa~Q~~~~~~~~~~~~-------------~~~----~~~~-~~gg~~~~~~~~~~~~----------- 516 (930)
.++||||+|+|.-|.++.+.+.+++... +.. .... -........+...+..
T Consensus 37 RPkVLIL~P~R~~A~~~V~~Li~l~~~~~~~~nk~RF~~efg~~~~~~~~~~~~~~~~~kP~D~~~~F~GN~DD~FrlGi 116 (442)
T PF06862_consen 37 RPKVLILLPFRNSALRIVETLISLLPPGKQVENKKRFEEEFGLPEDEDDDEEPPEFKKSKPEDFKALFSGNNDDCFRLGI 116 (442)
T ss_pred CceEEEEcccHHHHHHHHHHHHHHcCccchHHHHHHHHHHcCCCccccchhhhccccCCCchhHHHhcCCCccceEEEeE
Confidence 5889999999999999999888776541 100 0000 0000111112222222
Q ss_pred --------------CCcEEEECchhHHHhhhcc-----CCcccccceEEEEecchhhhhcCcHHHHHHHHHHHhhcCc--
Q psy15524 517 --------------GISILVATPGRLLDHCKHT-----ETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKP-- 575 (930)
Q Consensus 517 --------------~~~Ilv~Tp~rl~~~l~~~-----~~~~~~~l~~lVlDEah~l~~~g~~~~l~~i~~~l~~~~~-- 575 (930)
++|||||+|=-|-..+... ..-.+++++++|+|.||.++ |.-.+.+..+++.+...+.
T Consensus 117 k~trk~ikLys~Fy~SDIIiASPLGLr~~i~~~~~~~~d~DFLSSIEv~iiD~ad~l~-MQNW~Hv~~v~~~lN~~P~~~ 195 (442)
T PF06862_consen 117 KFTRKSIKLYSDFYSSDIIIASPLGLRMIIGEEGEKKRDYDFLSSIEVLIIDQADVLL-MQNWEHVLHVFEHLNLQPKKS 195 (442)
T ss_pred EEecCeeeeecccccCCEEEEChHHHHHHhccccccccccchhheeeeEeechhhHHH-HhhHHHHHHHHHHhccCCCCC
Confidence 3689999997776655531 12248999999999999776 4445566677777765432
Q ss_pred -------------------cceEEEEccccCHHHHHHHhhhcCCCE-EEEccCCCCcccCccceecCCCceEEEEEcCc-
Q psy15524 576 -------------------QFQSILLSATLTPAVQRLAGMTLQNPI-QIDAADSTDIHNTTDSLVIPDSLKQHFIVTPP- 634 (930)
Q Consensus 576 -------------------~~q~vl~SAT~~~~~~~l~~~~~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 634 (930)
-+|++++|+..++++..+......|.. .+.+...... ......+...++|.+...+.
T Consensus 196 ~~~DfsRVR~w~Ldg~a~~~RQtii~S~~~~pe~~slf~~~~~N~~G~v~~~~~~~~--~g~i~~v~~~v~Q~F~r~~~~ 273 (442)
T PF06862_consen 196 HDTDFSRVRPWYLDGQAKYYRQTIIFSSFQTPEINSLFNRHCQNYAGKVRLKPPYEA--SGVISQVVVQVRQVFQRFDCS 273 (442)
T ss_pred CCCCHHHHHHHHHcCcchheeEeEEecCCCCHHHHHHHHhhCcCccceEEEeecccc--ceeeeccccCCceEEEEecCC
Confidence 379999999999999999988666642 2222222111 01112234566777754332
Q ss_pred ------hhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHHHHHHHHHHhhc
Q psy15524 635 ------KLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRS 708 (930)
Q Consensus 635 ------~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~v~~~F~~ 708 (930)
+.++......+...... ....+.+|||++|--.--.+...|.+ .++.+..+|-..++.+-..+-..|..
T Consensus 274 s~~~~~d~Rf~yF~~~iLP~l~~--~~~~~~~LIfIPSYfDfVRlRN~lk~---~~~sF~~i~EYts~~~isRAR~~F~~ 348 (442)
T PF06862_consen 274 SPADDPDARFKYFTKKILPQLKR--DSKMSGTLIFIPSYFDFVRLRNYLKK---ENISFVQISEYTSNSDISRARSQFFH 348 (442)
T ss_pred CcchhhhHHHHHHHHHHHHHhhh--ccCCCcEEEEecchhhhHHHHHHHHh---cCCeEEEecccCCHHHHHHHHHHHHc
Confidence 34555555544433331 23378999999998777777788875 48899999999999999999999999
Q ss_pred CCCcEEEecccc--ccccCCCCccEEEEecCCCChhhHHhhhcccccCCC------CceEEEEeCcccHHHHHHH
Q psy15524 709 VKSGVLICTDVA--ARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGH------EGSSLLFLIPSEVKLVEEL 775 (930)
Q Consensus 709 ~~~~vLv~T~~~--~~GlDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~------~g~~~~~~~~~e~~~~~~l 775 (930)
|+..||+.|.=+ =+=..+.++..||.|.+|..+.-|-..++-.+.... ...|.++++.-+.--++++
T Consensus 349 G~~~iLL~TER~HFfrRy~irGi~~viFY~~P~~p~fY~El~n~~~~~~~~~~~~~~~~~~~lysk~D~~~LErI 423 (442)
T PF06862_consen 349 GRKPILLYTERFHFFRRYRIRGIRHVIFYGPPENPQFYSELLNMLDESSGGEVDAADATVTVLYSKYDALRLERI 423 (442)
T ss_pred CCceEEEEEhHHhhhhhceecCCcEEEEECCCCChhHHHHHHhhhcccccccccccCceEEEEecHhHHHHHHHH
Confidence 999999999754 356677889999999999999888777765544332 5788888888777666665
|
; GO: 0005634 nucleus |
| >TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family | Back alignment and domain information |
|---|
Probab=99.15 E-value=2.3e-10 Score=136.05 Aligned_cols=153 Identities=21% Similarity=0.211 Sum_probs=100.3
Q ss_pred CcHHHHHHHHHhh----c------CCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHH
Q psy15524 6 VTTVQQLSIQPIL----D------GGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLE 75 (930)
Q Consensus 6 l~~~Q~~ai~~~~----~------g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~ 75 (930)
++++|..|+..+. . .+..+++.|||||||++.+..+...+.. ....++|||+|+.+|..|+.+
T Consensus 239 ~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la~~l~~~-------~~~~~vl~lvdR~~L~~Q~~~ 311 (667)
T TIGR00348 239 QRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAARKALEL-------LKNPKVFFVVDRRELDYQLMK 311 (667)
T ss_pred hHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHHHHHHhh-------cCCCeEEEEECcHHHHHHHHH
Confidence 6789999998763 2 2469999999999999877666544421 235679999999999999999
Q ss_pred HHHHHhhhcCCceeEEeeCCCchHHHHHHhcC-CCcEEEEChHHHHHHHhcC-CCccCCCc-cEEEEcccccccccCcHH
Q psy15524 76 IFTKLCKSFTWIVPSWLTGGEKMKSEKARIRK-GISILVATPGRLLDHCKHT-ETLKFSKV-EHLVLDEADRILDQGYER 152 (930)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~-~~~Ilv~Tp~~l~~~l~~~-~~~~l~~l-~~vViDE~h~~~~~~~~~ 152 (930)
.|..+..... .+..+.......+.. ..+|+|+|.+.+...+... ..+...+- .+||+||||+.....+..
T Consensus 312 ~f~~~~~~~~-------~~~~s~~~L~~~l~~~~~~iivtTiQk~~~~~~~~~~~~~~~~~~~lvIvDEaHrs~~~~~~~ 384 (667)
T TIGR00348 312 EFQSLQKDCA-------ERIESIAELKRLLEKDDGGIIITTIQKFDKKLKEEEEKFPVDRKEVVVIFDEAHRSQYGELAK 384 (667)
T ss_pred HHHhhCCCCC-------cccCCHHHHHHHHhCCCCCEEEEEhHHhhhhHhhhhhccCCCCCCEEEEEEcCccccchHHHH
Confidence 9988763211 111222333333433 3689999999997643321 11111111 289999999865433322
Q ss_pred HHHHHHHHHhhcCCCceEEEEEeecCC
Q psy15524 153 DIAEFLEILKKQKPQFQSILLSATLTP 179 (930)
Q Consensus 153 ~~~~i~~~l~~~~~~~~~i~lSAT~~~ 179 (930)
. ++..-++..++||||||-.
T Consensus 385 ~-------l~~~~p~a~~lGfTaTP~~ 404 (667)
T TIGR00348 385 N-------LKKALKNASFFGFTGTPIF 404 (667)
T ss_pred H-------HHhhCCCCcEEEEeCCCcc
Confidence 2 2222355689999999964
|
Members of this family are assumed to differ from each other in DNA site specificity. |
| >KOG0949|consensus | Back alignment and domain information |
|---|
Probab=99.14 E-value=1e-10 Score=133.08 Aligned_cols=164 Identities=17% Similarity=0.143 Sum_probs=114.9
Q ss_pred cCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHHhhhc
Q psy15524 5 QVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSF 84 (930)
Q Consensus 5 ~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~ 84 (930)
.|-.||++.+..+-.+.+++|+|||.+|||.+-...+-..+.. .+..-+|+++|+++|++|........+...
T Consensus 511 ~Pd~WQ~elLDsvDr~eSavIVAPTSaGKTfisfY~iEKVLRe-------sD~~VVIyvaPtKaLVnQvsa~VyaRF~~~ 583 (1330)
T KOG0949|consen 511 CPDEWQRELLDSVDRNESAVIVAPTSAGKTFISFYAIEKVLRE-------SDSDVVIYVAPTKALVNQVSANVYARFDTK 583 (1330)
T ss_pred CCcHHHHHHhhhhhcccceEEEeeccCCceeccHHHHHHHHhh-------cCCCEEEEecchHHHhhhhhHHHHHhhccC
Confidence 4789999999999999999999999999999866666655544 234459999999999999999888876422
Q ss_pred CCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcC--CCccCCCccEEEEcccccccccCcHHHHHHHHHHHh
Q psy15524 85 TWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHT--ETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILK 162 (930)
Q Consensus 85 ~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~--~~~~l~~l~~vViDE~h~~~~~~~~~~~~~i~~~l~ 162 (930)
.......+.|.-.. ..+.-.-+|+|+|+-|+.+-..+... ......+++++|+||+|++....-+--++.++..+
T Consensus 584 t~~rg~sl~g~ltq--EYsinp~nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEVH~iG~~ed~l~~Eqll~li- 660 (1330)
T KOG0949|consen 584 TFLRGVSLLGDLTQ--EYSINPWNCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEVHLIGNEEDGLLWEQLLLLI- 660 (1330)
T ss_pred ccccchhhHhhhhH--HhcCCchhceEEEEchHHHHHHhcCchhhhhhhhcceEEEechhhhccccccchHHHHHHHhc-
Confidence 21111112222111 11111235899999999998888763 23336889999999999997654322233333222
Q ss_pred hcCCCceEEEEEeecCCCcc
Q psy15524 163 KQKPQFQSILLSATLTPATC 182 (930)
Q Consensus 163 ~~~~~~~~i~lSAT~~~~~~ 182 (930)
.++++++|||.++...
T Consensus 661 ----~CP~L~LSATigN~~l 676 (1330)
T KOG0949|consen 661 ----PCPFLVLSATIGNPNL 676 (1330)
T ss_pred ----CCCeeEEecccCCHHH
Confidence 3679999999998653
|
|
| >COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.1e-09 Score=124.71 Aligned_cols=150 Identities=19% Similarity=0.167 Sum_probs=102.9
Q ss_pred ccCcHHHHHHHHHhh----cCC-cEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHH
Q psy15524 4 TQVTTVQQLSIQPIL----DGG-DVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFT 78 (930)
Q Consensus 4 ~~l~~~Q~~ai~~~~----~g~-~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~ 78 (930)
..++.+|..||..+. .|+ .+|+++.||+|||..++. ++.+|.+ ++.-.++|+|+-+++|+.|.+..+.
T Consensus 164 i~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTAia-ii~rL~r------~~~~KRVLFLaDR~~Lv~QA~~af~ 236 (875)
T COG4096 164 IGPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTAIA-IIDRLIK------SGWVKRVLFLADRNALVDQAYGAFE 236 (875)
T ss_pred ccchHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeHHH-HHHHHHh------cchhheeeEEechHHHHHHHHHHHH
Confidence 368999999997754 454 499999999999998544 4455554 2334569999999999999999988
Q ss_pred HHhhhcCCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcC----CCccCCCccEEEEcccccccccCcHHHH
Q psy15524 79 KLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHT----ETLKFSKVEHLVLDEADRILDQGYERDI 154 (930)
Q Consensus 79 ~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~----~~~~l~~l~~vViDE~h~~~~~~~~~~~ 154 (930)
.+......++......+. ..++|.++|...+....... ..+....+++|||||||+=.- ...
T Consensus 237 ~~~P~~~~~n~i~~~~~~----------~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaHRgi~----~~~ 302 (875)
T COG4096 237 DFLPFGTKMNKIEDKKGD----------TSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAHRGIY----SEW 302 (875)
T ss_pred HhCCCccceeeeecccCC----------cceeEEEeehHHHHhhhhccccccccCCCCceeEEEechhhhhHH----hhh
Confidence 876543322221111111 14789999999998877653 234457799999999997332 223
Q ss_pred HHHHHHHhhcCCCceEEEEEeecCC
Q psy15524 155 AEFLEILKKQKPQFQSILLSATLTP 179 (930)
Q Consensus 155 ~~i~~~l~~~~~~~~~i~lSAT~~~ 179 (930)
..|+..+... .+++||||..
T Consensus 303 ~~I~dYFdA~-----~~gLTATP~~ 322 (875)
T COG4096 303 SSILDYFDAA-----TQGLTATPKE 322 (875)
T ss_pred HHHHHHHHHH-----HHhhccCccc
Confidence 3555555432 3566999975
|
|
| >KOG2340|consensus | Back alignment and domain information |
|---|
Probab=99.11 E-value=3.4e-09 Score=113.65 Aligned_cols=348 Identities=20% Similarity=0.241 Sum_probs=220.1
Q ss_pred CCCCCHHHHHhHHhhhcCCcEEEEcc-CCCch--hHHhhHHHHHHHHhhCccc-------------------CC---CCC
Q psy15524 412 ITQVTTVQQLSIQPILDGGDVLVRSQ-TGSGK--TLAYAIPIIQKLQEMRPKI-------------------SR---KDG 466 (930)
Q Consensus 412 ~~~~~~iQ~~~i~~il~~~d~lv~a~-TGsGK--Tl~~~lp~l~~l~~~~~~~-------------------~~---~~~ 466 (930)
-..+|+.|.+.+..+.+-+|++..-. -+.|+ +-.|++-+++++.+.+..+ .+ -..
T Consensus 214 s~pltalQ~~L~~~m~~YrDl~y~~~s~kn~~e~R~lYclH~lNHi~K~r~~IL~Nn~r~~Sqk~g~~~~~~frDQG~tR 293 (698)
T KOG2340|consen 214 SEPLTALQKELFKIMFNYRDLLYPTRSQKNGEEYRSLYCLHALNHILKTRDLILGNNRRLASQKEGENPDESFRDQGFTR 293 (698)
T ss_pred cCcchHHHHHHHHHHHhhhhhccccccccccchhhhhHHHHHHHHHHHHHHHHhcchHhhhhhhcCCCCchhhhhcCCCC
Confidence 35789999999999999999775322 23455 4568888898876543110 01 124
Q ss_pred eeEEEEccCHHHHHHHHHHHHHhhccCCCc---c------eE---------------------EEeCCCc--------hH
Q psy15524 467 IYAVIILPTRELALQTLEIFTKLCKSFTWI---V------PS---------------------WLTGGEK--------MK 508 (930)
Q Consensus 467 ~~~lil~PtreLa~Q~~~~~~~~~~~~~~~---~------~~---------------------~~~gg~~--------~~ 508 (930)
++||||+|+|+-|..+...+..++.....- + .+ .+.|.++ ..
T Consensus 294 pkVLivvpfRe~A~riVn~lis~l~G~~q~k~~V~Nk~RF~~eys~~te~~~~~~~kP~D~~~lf~GNtDD~FriGl~ft 373 (698)
T KOG2340|consen 294 PKVLIVVPFRESAYRIVNLLISLLSGDDQGKSEVWNKKRFEGEYSGPTELPPPRAKKPEDFEELFSGNTDDAFRIGLAFT 373 (698)
T ss_pred ceEEEEecchHHHHHHHHHHHHHhcCccccchhhhhhhhhchhcCCCcccCCCCCCCchhHHHHhcCCCcchhhhhHHHH
Confidence 789999999999999999988874321110 0 00 0111110 00
Q ss_pred HHHHHH---hcCCcEEEECchhHHHhhhccCC----c-ccccceEEEEecchhhhhcCcHHHHHHHHHHHhhcCc-----
Q psy15524 509 SEKARI---RKGISILVATPGRLLDHCKHTET----L-KFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKP----- 575 (930)
Q Consensus 509 ~~~~~~---~~~~~Ilv~Tp~rl~~~l~~~~~----~-~~~~l~~lVlDEah~l~~~g~~~~l~~i~~~l~~~~~----- 575 (930)
...-.+ ....||+||+|=-|--.+.+++. + .++++.++|+|-||.++..+| +.+..|+.+|...+.
T Consensus 374 kKtikLys~fy~SDIlVaSPLGLRmil~n~gdkkrd~dfLSSIEl~iIDQa~~~l~QNw-Ehl~~ifdHLn~~P~k~h~~ 452 (698)
T KOG2340|consen 374 KKTIKLYSKFYKSDILVASPLGLRMILGNTGDKKRDFDFLSSIELLIIDQADIMLMQNW-EHLLHIFDHLNLQPSKQHDV 452 (698)
T ss_pred HHHHHHHhhhcccCeEEecchhhhhhhcCCCcccccchhhhhhhhhhhhhHHHHHHhhH-HHHHHHHHHhhcCcccccCC
Confidence 000011 23578999999777666654322 1 378899999999998886665 445667777754332
Q ss_pred ----------------cceEEEEccccCHHHHHHHhhhcCCCE-EEEccCCCCcccCccceecCCCceEEE-------EE
Q psy15524 576 ----------------QFQSILLSATLTPAVQRLAGMTLQNPI-QIDAADSTDIHNTTDSLVIPDSLKQHF-------IV 631 (930)
Q Consensus 576 ----------------~~q~vl~SAT~~~~~~~l~~~~~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~-------~~ 631 (930)
-+|+++||+-..+....+...+..|-. .+......... ...... -.+.|.+ +.
T Consensus 453 DfSRVR~wyL~~qsr~~rQtl~Fs~y~~~~~nS~fn~~c~N~~Gkv~~~~~~~~g-si~~v~--~~l~Qvf~ri~~~si~ 529 (698)
T KOG2340|consen 453 DFSRVRMWYLDGQSRYFRQTLLFSRYSHPLFNSLFNQYCQNMAGKVKARNLQSGG-SISNVG--IPLCQVFQRIEVKSII 529 (698)
T ss_pred ChhheehheeccHHHHHHHHHHHHhhccHHHHHHHHHhhhhhcceeeeccccCCC-chhhcc--chhhhhhhheeccCcc
Confidence 368999999988887777776665531 11111110000 000111 1122222 23
Q ss_pred cCchhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHHHHHHHHHHhhcCCC
Q psy15524 632 TPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSVKS 711 (930)
Q Consensus 632 ~~~~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~v~~~F~~~~~ 711 (930)
..++.|+......+..... ......++||.++.-.--.+...+++. .+.+..+|...++..-.+.-+.|-.|..
T Consensus 530 ~~~D~RFkyFv~~ImPq~~---k~t~s~~LiyIPSYfDFVRvRNy~K~e---~i~F~~i~EYssk~~vsRAR~lF~qgr~ 603 (698)
T KOG2340|consen 530 ETPDARFKYFVDKIMPQLI---KRTESGILIYIPSYFDFVRVRNYMKKE---EISFVMINEYSSKSKVSRARELFFQGRK 603 (698)
T ss_pred cCchHHHHHHHHhhchhhc---ccccCceEEEecchhhHHHHHHHhhhh---hcchHHHhhhhhHhhhhHHHHHHHhcCc
Confidence 3445666665555443222 122567899999987666666777664 5677777877777777778888999999
Q ss_pred cEEEecccc--ccccCCCCccEEEEecCCCChh---hHHhhhcccccCCC----CceEEEEeCcccH
Q psy15524 712 GVLICTDVA--ARGLDLPLVDWIVQYTAPSSST---DYVHRVGRTARVGH----EGSSLLFLIPSEV 769 (930)
Q Consensus 712 ~vLv~T~~~--~~GlDip~v~~VI~~~~p~s~~---~y~qr~GRagR~g~----~g~~~~~~~~~e~ 769 (930)
.||+-|.-+ -|-.++.+|..||.|.+|..|. +++.+.||+.-.|+ .-.|.++++.-+.
T Consensus 604 ~vlLyTER~hffrR~~ikGVk~vVfYqpP~~P~FYsEiinm~~k~~~~gn~d~d~~t~~ilytKyD~ 670 (698)
T KOG2340|consen 604 SVLLYTERAHFFRRYHIKGVKNVVFYQPPNNPHFYSEIINMSDKTTSQGNTDLDIFTVRILYTKYDR 670 (698)
T ss_pred eEEEEehhhhhhhhheecceeeEEEecCCCCcHHHHHHHhhhhhhhccCCccccceEEEEEeechhh
Confidence 999999765 4778999999999999999885 55677888765553 2356666665444
|
|
| >KOG1002|consensus | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.3e-08 Score=107.96 Aligned_cols=138 Identities=22% Similarity=0.247 Sum_probs=104.6
Q ss_pred hhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHHHHHHHHHHhhcC-CCcE
Q psy15524 635 KLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSV-KSGV 713 (930)
Q Consensus 635 ~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~v~~~F~~~-~~~v 713 (930)
..|..+|.+.+..... .+..-|.|||..-....+.+.-.|.+. |+.+..+-|+|++..|...++.|++. .++|
T Consensus 619 STKIEAL~EEl~~l~~---rd~t~KsIVFSQFTSmLDLi~~rL~ka---GfscVkL~GsMs~~ardatik~F~nd~~c~v 692 (791)
T KOG1002|consen 619 STKIEALVEELYFLRE---RDRTAKSIVFSQFTSMLDLIEWRLGKA---GFSCVKLVGSMSPAARDATIKYFKNDIDCRV 692 (791)
T ss_pred hhHHHHHHHHHHHHHH---cccchhhhhHHHHHHHHHHHHHHhhcc---CceEEEeccCCChHHHHHHHHHhccCCCeEE
Confidence 3456666665554322 223568899998888888877777764 99999999999999999999999976 3444
Q ss_pred -EEeccccccccCCCCccEEEEecCCCChhhHHhhhcccccCCC--CceEEEEeCcccHH-HHHHHHhc
Q psy15524 714 -LICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGH--EGSSLLFLIPSEVK-LVEELQNR 778 (930)
Q Consensus 714 -Lv~T~~~~~GlDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~--~g~~~~~~~~~e~~-~~~~l~~~ 778 (930)
|++-.+.+.-+|+...+.|+..|+.+++..-.|--.|..|.|+ +-..+-|+..+..+ .+-.|+++
T Consensus 693 fLvSLkAGGVALNLteASqVFmmDPWWNpaVe~Qa~DRiHRIGQ~rPvkvvrf~iEnsiE~kIieLQeK 761 (791)
T KOG1002|consen 693 FLVSLKAGGVALNLTEASQVFMMDPWWNPAVEWQAQDRIHRIGQYRPVKVVRFCIENSIEEKIIELQEK 761 (791)
T ss_pred EEEEeccCceEeeechhceeEeecccccHHHHhhhhhhHHhhcCccceeEEEeehhccHHHHHHHHHHH
Confidence 6677888888999999999999999999988888888888886 55666677665443 44445544
|
|
| >PRK04914 ATP-dependent helicase HepA; Validated | Back alignment and domain information |
|---|
Probab=99.06 E-value=3.3e-09 Score=128.17 Aligned_cols=161 Identities=18% Similarity=0.142 Sum_probs=99.5
Q ss_pred cCcHHHHHHHHHhhcC--CcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHHhh
Q psy15524 5 QVTTVQQLSIQPILDG--GDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCK 82 (930)
Q Consensus 5 ~l~~~Q~~ai~~~~~g--~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~ 82 (930)
.|.|+|.+++..++.. ..+|+.-..|.|||.-+.+.+-..+.. +...++|||||. .|+.|+..++.+.+.
T Consensus 152 ~l~pHQl~~~~~vl~~~~~R~LLADEvGLGKTIeAglil~~l~~~-------g~~~rvLIVvP~-sL~~QW~~El~~kF~ 223 (956)
T PRK04914 152 SLIPHQLYIAHEVGRRHAPRVLLADEVGLGKTIEAGMIIHQQLLT-------GRAERVLILVPE-TLQHQWLVEMLRRFN 223 (956)
T ss_pred CCCHHHHHHHHHHhhccCCCEEEEeCCcCcHHHHHHHHHHHHHHc-------CCCCcEEEEcCH-HHHHHHHHHHHHHhC
Confidence 5899999998776643 479999999999999887666555443 223359999997 899999999877653
Q ss_pred hcCCceeEEeeCCCchHHH--HHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEccccccccc-CcHHHHHHHHH
Q psy15524 83 SFTWIVPSWLTGGEKMKSE--KARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQ-GYERDIAEFLE 159 (930)
Q Consensus 83 ~~~~~~~~~~~g~~~~~~~--~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~-~~~~~~~~i~~ 159 (930)
.....+.++...... ........+++|+|.+.+...-.....+.-...++|||||||++-.. +....-...+.
T Consensus 224 ----l~~~i~~~~~~~~~~~~~~~pf~~~~~vI~S~~~l~~~~~~~~~l~~~~wdlvIvDEAH~lk~~~~~~s~~y~~v~ 299 (956)
T PRK04914 224 ----LRFSLFDEERYAEAQHDADNPFETEQLVICSLDFLRRNKQRLEQALAAEWDLLVVDEAHHLVWSEEAPSREYQVVE 299 (956)
T ss_pred ----CCeEEEcCcchhhhcccccCccccCcEEEEEHHHhhhCHHHHHHHhhcCCCEEEEechhhhccCCCCcCHHHHHHH
Confidence 222222222111100 00111236799999887754211101122347899999999998521 11111123333
Q ss_pred HHhhcCCCceEEEEEeecCC
Q psy15524 160 ILKKQKPQFQSILLSATLTP 179 (930)
Q Consensus 160 ~l~~~~~~~~~i~lSAT~~~ 179 (930)
.+... ...+++|||||-.
T Consensus 300 ~La~~--~~~~LLLTATP~q 317 (956)
T PRK04914 300 QLAEV--IPGVLLLTATPEQ 317 (956)
T ss_pred HHhhc--cCCEEEEEcCccc
Confidence 33322 2368999999964
|
|
| >PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.8e-08 Score=116.07 Aligned_cols=292 Identities=17% Similarity=0.206 Sum_probs=168.0
Q ss_pred EEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHHHHhhccCCCcceEEEeCCCchHHHH
Q psy15524 432 VLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEK 511 (930)
Q Consensus 432 ~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~ 511 (930)
.+|.||.|||||.+. +.-+..... .++.++|+|+-.+.|+.+..+.++...-. ..+ .+...+. .
T Consensus 52 ~vVRSpMGTGKTtaL-i~wLk~~l~-------~~~~~VLvVShRrSL~~sL~~rf~~~~l~--gFv-~Y~d~~~-~---- 115 (824)
T PF02399_consen 52 LVVRSPMGTGKTTAL-IRWLKDALK-------NPDKSVLVVSHRRSLTKSLAERFKKAGLS--GFV-NYLDSDD-Y---- 115 (824)
T ss_pred EEEECCCCCCcHHHH-HHHHHHhcc-------CCCCeEEEEEhHHHHHHHHHHHHhhcCCC--cce-eeecccc-c----
Confidence 689999999999874 333333221 34678999999999999999998765321 111 1111110 0
Q ss_pred HHHh-cCCcEEEECchhHHHhhhccCCcccccceEEEEecchhhhhcCcHHH-------HHHHHHHHhhcCccceEEEEc
Q psy15524 512 ARIR-KGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERD-------IAEFLEILKKQKPQFQSILLS 583 (930)
Q Consensus 512 ~~~~-~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~l~~~g~~~~-------l~~i~~~l~~~~~~~q~vl~S 583 (930)
.+. ...+-+++..+.|.... ...+.+.++|||||+..++..-|.+. +..+...+.. ...+|++-
T Consensus 116 -~i~~~~~~rLivqIdSL~R~~----~~~l~~yDvVIIDEv~svL~qL~S~Tm~~~~~v~~~L~~lI~~---ak~VI~~D 187 (824)
T PF02399_consen 116 -IIDGRPYDRLIVQIDSLHRLD----GSLLDRYDVVIIDEVMSVLNQLFSPTMRQREEVDNLLKELIRN---AKTVIVMD 187 (824)
T ss_pred -cccccccCeEEEEehhhhhcc----cccccccCEEEEehHHHHHHHHhHHHHhhHHHHHHHHHHHHHh---CCeEEEec
Confidence 000 12456777766665443 22467799999999998876533322 2223333332 45789999
Q ss_pred cccCHHHHHHHhhhcCC-CEEEEccCCCCcccC-------------------------ccceec----CCCceEEEEEcC
Q psy15524 584 ATLTPAVQRLAGMTLQN-PIQIDAADSTDIHNT-------------------------TDSLVI----PDSLKQHFIVTP 633 (930)
Q Consensus 584 AT~~~~~~~l~~~~~~~-~~~i~~~~~~~~~~~-------------------------~~~~~~----~~~~~~~~~~~~ 633 (930)
||+.+..-++......+ ++.+....-...... ...... +......-....
T Consensus 188 A~ln~~tvdFl~~~Rp~~~i~vI~n~y~~~~fs~R~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (824)
T PF02399_consen 188 ADLNDQTVDFLASCRPDENIHVIVNTYASPGFSNRRCTFLRSLGTDTLAAALNPEDENADTSPTPKHSPDPTATAAISND 267 (824)
T ss_pred CCCCHHHHHHHHHhCCCCcEEEEEeeeecCCcccceEEEecccCcHHHHHHhCCcccccccCCCcCCCCccccccccccc
Confidence 99999888887765443 232222110000000 000000 000011111111
Q ss_pred chhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHHHHHHHHHHhhcCCCcE
Q psy15524 634 PKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSVKSGV 713 (930)
Q Consensus 634 ~~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~v~~~F~~~~~~v 713 (930)
...-+..|...|.. ++++-||++|...++.+++..... +..+..++|.-+..+ +. . -++.+|
T Consensus 268 ~~tF~~~L~~~L~~---------gknIcvfsSt~~~~~~v~~~~~~~---~~~Vl~l~s~~~~~d---v~-~--W~~~~V 329 (824)
T PF02399_consen 268 ETTFFSELLARLNA---------GKNICVFSSTVSFAEIVARFCARF---TKKVLVLNSTDKLED---VE-S--WKKYDV 329 (824)
T ss_pred hhhHHHHHHHHHhC---------CCcEEEEeChHHHHHHHHHHHHhc---CCeEEEEcCCCCccc---cc-c--ccceeE
Confidence 11222233333321 678889999999999998888765 456777788665552 22 2 356789
Q ss_pred EEeccccccccCCCCc--cEEEEe--cCC--CChhhHHhhhcccccCCCCceEEEEeCc
Q psy15524 714 LICTDVAARGLDLPLV--DWIVQY--TAP--SSSTDYVHRVGRTARVGHEGSSLLFLIP 766 (930)
Q Consensus 714 Lv~T~~~~~GlDip~v--~~VI~~--~~p--~s~~~y~qr~GRagR~g~~g~~~~~~~~ 766 (930)
++=|.+..-|+++-.. +-+.-| ... .+..+..|++||.=... ....++++.+
T Consensus 330 viYT~~itvG~Sf~~~HF~~~f~yvk~~~~gpd~~s~~Q~lgRvR~l~-~~ei~v~~d~ 387 (824)
T PF02399_consen 330 VIYTPVITVGLSFEEKHFDSMFAYVKPMSYGPDMVSVYQMLGRVRSLL-DNEIYVYIDA 387 (824)
T ss_pred EEEeceEEEEeccchhhceEEEEEecCCCCCCcHHHHHHHHHHHHhhc-cCeEEEEEec
Confidence 9999999999999543 333333 222 24556899999984433 4555555554
|
It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication |
| >COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.7e-09 Score=130.19 Aligned_cols=166 Identities=23% Similarity=0.240 Sum_probs=104.2
Q ss_pred CcHHHHHHHHHhhcC---C-cEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHHh
Q psy15524 6 VTTVQQLSIQPILDG---G-DVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLC 81 (930)
Q Consensus 6 l~~~Q~~ai~~~~~g---~-~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~ 81 (930)
.++.|..++..+..+ . .+++.||||+|||.+.+.++...+... .....+++++.|++.++++++++++..+
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~-----~~~~~r~i~vlP~~t~ie~~~~r~~~~~ 270 (733)
T COG1203 196 GYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEK-----IKLKSRVIYVLPFRTIIEDMYRRAKEIF 270 (733)
T ss_pred hhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhcc-----ccccceEEEEccHHHHHHHHHHHHHhhh
Confidence 488999999887753 3 689999999999999999998877652 1146679999999999999999999887
Q ss_pred hhcCCceeEEeeCCCchHHHHHH-----h---------cCCCcEEEEChHHHHHHHhcCCCcc-C--CCccEEEEccccc
Q psy15524 82 KSFTWIVPSWLTGGEKMKSEKAR-----I---------RKGISILVATPGRLLDHCKHTETLK-F--SKVEHLVLDEADR 144 (930)
Q Consensus 82 ~~~~~~~~~~~~g~~~~~~~~~~-----l---------~~~~~Ilv~Tp~~l~~~l~~~~~~~-l--~~l~~vViDE~h~ 144 (930)
......... ..+.....-.... . .....+.++||-............. + =..+.+|+||+|.
T Consensus 271 ~~~~~~~~~-~h~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~vIlDE~h~ 349 (733)
T COG1203 271 GLFSVIGKS-LHSSSKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSLVILDEVHL 349 (733)
T ss_pred ccccccccc-ccccccchhhhccccccceeEEecccccceeccccccCHhHhhhhhccccchHHHHHHHhhchhhccHHh
Confidence 653322111 1111111100000 0 0114566777766655322111111 1 1247899999999
Q ss_pred ccccCcHHHHHHHHHHHhhcCCCceEEEEEeecCC
Q psy15524 145 ILDQGYERDIAEFLEILKKQKPQFQSILLSATLTP 179 (930)
Q Consensus 145 ~~~~~~~~~~~~i~~~l~~~~~~~~~i~lSAT~~~ 179 (930)
+.+..--..+..++..+...+ ..++++|||+|+
T Consensus 350 ~~~~~~~~~l~~~i~~l~~~g--~~ill~SATlP~ 382 (733)
T COG1203 350 YADETMLAALLALLEALAEAG--VPVLLMSATLPP 382 (733)
T ss_pred hcccchHHHHHHHHHHHHhCC--CCEEEEecCCCH
Confidence 987753344445555554332 467777777764
|
|
| >PRK12906 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.04 E-value=4.9e-09 Score=122.51 Aligned_cols=128 Identities=19% Similarity=0.218 Sum_probs=98.6
Q ss_pred cCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHHhhhc
Q psy15524 5 QVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSF 84 (930)
Q Consensus 5 ~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~ 84 (930)
.|++.|.-..-.+..|+ +..+.||+|||+++.+|++..... |.++-+++|+--||.|-++.+..+...+
T Consensus 80 ~~~dvQlig~l~l~~G~--iaEm~TGEGKTLvA~l~a~l~al~---------G~~v~vvT~neyLA~Rd~e~~~~~~~~L 148 (796)
T PRK12906 80 RPFDVQIIGGIVLHEGN--IAEMKTGEGKTLTATLPVYLNALT---------GKGVHVVTVNEYLSSRDATEMGELYRWL 148 (796)
T ss_pred CCchhHHHHHHHHhcCC--cccccCCCCCcHHHHHHHHHHHHc---------CCCeEEEeccHHHHHhhHHHHHHHHHhc
Confidence 47888887766666665 999999999999999999877755 6669999999999999999999999988
Q ss_pred CCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHH-HHHhcC-----CCccCCCccEEEEccccccc
Q psy15524 85 TWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLL-DHCKHT-----ETLKFSKVEHLVLDEADRIL 146 (930)
Q Consensus 85 ~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~-~~l~~~-----~~~~l~~l~~vViDE~h~~~ 146 (930)
+ +.++++.++......... -.+||++||...+- +.++.. .....+.+.+.||||+|.++
T Consensus 149 G-l~vg~i~~~~~~~~r~~~--y~~dI~Y~t~~e~gfDyLRD~m~~~~~~~v~r~~~~aIvDEvDSiL 213 (796)
T PRK12906 149 G-LTVGLNLNSMSPDEKRAA--YNCDITYSTNSELGFDYLRDNMVVYKEQMVQRPLNYAIVDEVDSIL 213 (796)
T ss_pred C-CeEEEeCCCCCHHHHHHH--hcCCCeecCCccccccchhhccccchhhhhccCcceeeeccchhee
Confidence 7 788888777655443332 35799999987763 233321 11224678999999999865
|
|
| >KOG0391|consensus | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.2e-08 Score=117.96 Aligned_cols=125 Identities=19% Similarity=0.279 Sum_probs=98.8
Q ss_pred hhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHHHHHHHHHHhhcCCC--c
Q psy15524 635 KLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSVKS--G 712 (930)
Q Consensus 635 ~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~v~~~F~~~~~--~ 712 (930)
..|+..|+-+|.+... .+.++|||..-..+.+.+...|+.. |+.++.+.|...-++|...+++|..... +
T Consensus 1259 cGKLQtLAiLLqQLk~-----eghRvLIfTQMtkmLDVLeqFLnyH---gylY~RLDg~t~vEqRQaLmerFNaD~RIfc 1330 (1958)
T KOG0391|consen 1259 CGKLQTLAILLQQLKS-----EGHRVLIFTQMTKMLDVLEQFLNYH---GYLYVRLDGNTSVEQRQALMERFNADRRIFC 1330 (1958)
T ss_pred cchHHHHHHHHHHHHh-----cCceEEehhHHHHHHHHHHHHHhhc---ceEEEEecCCccHHHHHHHHHHhcCCCceEE
Confidence 3566666666655432 2889999999999999999988875 8999999999999999999999987653 5
Q ss_pred EEEeccccccccCCCCccEEEEecCCCChhhHHhhhcccccCCCC--ceEEEEeCcc
Q psy15524 713 VLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHE--GSSLLFLIPS 767 (930)
Q Consensus 713 vLv~T~~~~~GlDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~--g~~~~~~~~~ 767 (930)
.+++|..-+.|||+.+.|.||.||..+++..--|---|+.|.|+. -..+-|++.+
T Consensus 1331 fILSTrSggvGiNLtgADTVvFYDsDwNPtMDaQAQDrChRIGqtRDVHIYRLISe~ 1387 (1958)
T KOG0391|consen 1331 FILSTRSGGVGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIYRLISER 1387 (1958)
T ss_pred EEEeccCCccccccccCceEEEecCCCCchhhhHHHHHHHhhcCccceEEEEeeccc
Confidence 789999999999999999999999998887655555555555554 3445555543
|
|
| >PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain | Back alignment and domain information |
|---|
Probab=98.99 E-value=2.1e-09 Score=97.92 Aligned_cols=137 Identities=17% Similarity=0.188 Sum_probs=79.0
Q ss_pred CCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHHHHhhccCCCcceEEEeCCCchH
Q psy15524 429 GGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMK 508 (930)
Q Consensus 429 ~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~ 508 (930)
|+=-++-..+|+|||--.+--++..... .+.++|||.|||.++..+.+.++..--.+. +.-.. .
T Consensus 4 g~~~~~d~hpGaGKTr~vlp~~~~~~i~--------~~~rvLvL~PTRvva~em~~aL~~~~~~~~-------t~~~~-~ 67 (148)
T PF07652_consen 4 GELTVLDLHPGAGKTRRVLPEIVREAIK--------RRLRVLVLAPTRVVAEEMYEALKGLPVRFH-------TNARM-R 67 (148)
T ss_dssp TEEEEEE--TTSSTTTTHHHHHHHHHHH--------TT--EEEEESSHHHHHHHHHHTTTSSEEEE-------STTSS--
T ss_pred CceeEEecCCCCCCcccccHHHHHHHHH--------ccCeEEEecccHHHHHHHHHHHhcCCcccC-------ceeee-c
Confidence 4446788999999998755555554433 378899999999999988887754321111 00000 0
Q ss_pred HHHHHHhcCCcEEEECchhHHHhhhccCCcccccceEEEEecchhhhhcCcHHHHHHHHHHHhhcCccceEEEEccccCH
Q psy15524 509 SEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTP 588 (930)
Q Consensus 509 ~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~l~~~g~~~~l~~i~~~l~~~~~~~q~vl~SAT~~~ 588 (930)
....+.-|-++|.+.+...+.+ .....+++++|+||+|..-.... .....+..+... ....+|++|||+|.
T Consensus 68 ----~~~g~~~i~vMc~at~~~~~~~--p~~~~~yd~II~DEcH~~Dp~sI--A~rg~l~~~~~~-g~~~~i~mTATPPG 138 (148)
T PF07652_consen 68 ----THFGSSIIDVMCHATYGHFLLN--PCRLKNYDVIIMDECHFTDPTSI--AARGYLRELAES-GEAKVIFMTATPPG 138 (148)
T ss_dssp -------SSSSEEEEEHHHHHHHHHT--SSCTTS-SEEEECTTT--SHHHH--HHHHHHHHHHHT-TS-EEEEEESS-TT
T ss_pred ----cccCCCcccccccHHHHHHhcC--cccccCccEEEEeccccCCHHHH--hhheeHHHhhhc-cCeeEEEEeCCCCC
Confidence 1124567889999988776655 34468999999999996532221 111222333322 24689999999986
Q ss_pred HH
Q psy15524 589 AV 590 (930)
Q Consensus 589 ~~ 590 (930)
..
T Consensus 139 ~~ 140 (148)
T PF07652_consen 139 SE 140 (148)
T ss_dssp --
T ss_pred CC
Confidence 44
|
The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A .... |
| >PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane | Back alignment and domain information |
|---|
Probab=98.99 E-value=5.8e-09 Score=107.73 Aligned_cols=139 Identities=19% Similarity=0.252 Sum_probs=98.4
Q ss_pred HHHHHHhcCCCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHH
Q psy15524 402 MKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQ 481 (930)
Q Consensus 402 ~~~~l~~~~~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q 481 (930)
+.++..+..|+ .|+++|..++=.+..|+ ++++.||-|||++..+|++-.... |..|-|++.+..||.+
T Consensus 66 ~rea~~r~~g~-~p~~vQll~~l~L~~G~--laEm~TGEGKTli~~l~a~~~AL~---------G~~V~vvT~NdyLA~R 133 (266)
T PF07517_consen 66 VREAARRTLGL-RPYDVQLLGALALHKGR--LAEMKTGEGKTLIAALPAALNALQ---------GKGVHVVTSNDYLAKR 133 (266)
T ss_dssp HHHHHHHHTS-----HHHHHHHHHHHTTS--EEEESTTSHHHHHHHHHHHHHHTT---------SS-EEEEESSHHHHHH
T ss_pred HHHHHHHHcCC-cccHHHHhhhhhcccce--eEEecCCCCcHHHHHHHHHHHHHh---------cCCcEEEeccHHHhhc
Confidence 33444444554 67888888876666665 999999999999999888766554 7789999999999999
Q ss_pred HHHHHHHhhccCCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhH-HHhhhcc----CCc-ccccceEEEEecchhhh
Q psy15524 482 TLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRL-LDHCKHT----ETL-KFSKVEHLVLDEADRIL 555 (930)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl-~~~l~~~----~~~-~~~~l~~lVlDEah~l~ 555 (930)
-++.+..++..++ +.++.+.++..... ++....++|+++|.+.+ .|.++.. ... ..+.++++|+||||.++
T Consensus 134 D~~~~~~~y~~LG-lsv~~~~~~~~~~~--r~~~Y~~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvDs~L 210 (266)
T PF07517_consen 134 DAEEMRPFYEFLG-LSVGIITSDMSSEE--RREAYAADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVDSIL 210 (266)
T ss_dssp HHHHHHHHHHHTT---EEEEETTTEHHH--HHHHHHSSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHHHHT
T ss_pred cHHHHHHHHHHhh-hccccCccccCHHH--HHHHHhCcccccccchhhHHHHHHHHhhccchhccCCCCEEEEeccceEE
Confidence 9999999998776 45666777665432 22344679999999887 3444331 111 25789999999999876
|
SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A .... |
| >TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4 | Back alignment and domain information |
|---|
Probab=98.99 E-value=5.6e-09 Score=120.62 Aligned_cols=59 Identities=25% Similarity=0.300 Sum_probs=50.2
Q ss_pred HhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHHh
Q psy15524 16 PILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLC 81 (930)
Q Consensus 16 ~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~ 81 (930)
++.+++.+++.||||+|||++|++|++..+.. ..+.++||++||++|+.|+.+.+..+.
T Consensus 12 al~~~~~lliEA~TGtGKTlAYLlpal~~~~~-------~~~~rvlIstpT~~Lq~Ql~~~l~~l~ 70 (636)
T TIGR03117 12 SLRQKRIGMLEASTGVGKTLAMIMAALTMLKE-------RPDQKIAIAVPTLALMGQLWSELERLT 70 (636)
T ss_pred HHhcCCeEEEEcCCCCcHHHHHHHHHHHHHHh-------ccCceEEEECCcHHHHHHHHHHHHHHH
Confidence 34567889999999999999999999987753 124679999999999999999888776
|
Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome. |
| >TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative | Back alignment and domain information |
|---|
Probab=98.96 E-value=6.2e-09 Score=128.08 Aligned_cols=69 Identities=26% Similarity=0.278 Sum_probs=55.9
Q ss_pred CCccCcHHHHHHHH----HhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHH-H
Q psy15524 2 NITQVTTVQQLSIQ----PILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLE-I 76 (930)
Q Consensus 2 g~~~l~~~Q~~ai~----~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~-~ 76 (930)
||+ ++|.|.+.+. .+..|+++++.||||+|||++|++|++.... ++.+++|.+||++|..|+.. .
T Consensus 243 ~~~-~r~~Q~~~~~~i~~~~~~~~~~~~eA~TG~GKT~ayLlp~~~~~~---------~~~~vvi~t~t~~Lq~Ql~~~~ 312 (850)
T TIGR01407 243 GLE-YRPEQLKLAELVLDQLTHSEKSLIEAPTGTGKTLGYLLPALYYAI---------TEKPVVISTNTKVLQSQLLEKD 312 (850)
T ss_pred CCc-cCHHHHHHHHHHHHHhccCCcEEEECCCCCchhHHHHHHHHHHhc---------CCCeEEEEeCcHHHHHHHHHHH
Confidence 675 8999998666 4557889999999999999999999987653 13469999999999999876 3
Q ss_pred HHHH
Q psy15524 77 FTKL 80 (930)
Q Consensus 77 ~~~~ 80 (930)
+..+
T Consensus 313 ~~~l 316 (850)
T TIGR01407 313 IPLL 316 (850)
T ss_pred HHHH
Confidence 4444
|
This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli. |
| >PRK12326 preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=98.95 E-value=2.5e-08 Score=114.07 Aligned_cols=130 Identities=24% Similarity=0.298 Sum_probs=99.6
Q ss_pred CCccCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHHh
Q psy15524 2 NITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLC 81 (930)
Q Consensus 2 g~~~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~ 81 (930)
|. .|++.|.-..-.++.| -+..+.||+|||++..+|++..... |.++-+++|+--||.|-++.+..+.
T Consensus 76 g~-r~ydvQlig~l~Ll~G--~VaEM~TGEGKTLvA~l~a~l~AL~---------G~~VhvvT~NdyLA~RDae~m~~ly 143 (764)
T PRK12326 76 GL-RPFDVQLLGALRLLAG--DVIEMATGEGKTLAGAIAAAGYALQ---------GRRVHVITVNDYLARRDAEWMGPLY 143 (764)
T ss_pred CC-CcchHHHHHHHHHhCC--CcccccCCCCHHHHHHHHHHHHHHc---------CCCeEEEcCCHHHHHHHHHHHHHHH
Confidence 44 4788998888888877 3789999999999999999877654 5669999999999999999999999
Q ss_pred hhcCCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHH-HHHhc-----CCCccCCCccEEEEccccccc
Q psy15524 82 KSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLL-DHCKH-----TETLKFSKVEHLVLDEADRIL 146 (930)
Q Consensus 82 ~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~-~~l~~-----~~~~~l~~l~~vViDE~h~~~ 146 (930)
..++ +.++++.++.......... .+||+++|...+- +.++. ......+.+.+.||||+|.++
T Consensus 144 ~~LG-Lsvg~i~~~~~~~err~aY--~~DItYgTn~e~gFDyLRDnm~~~~~~~v~R~~~faIVDEvDSiL 211 (764)
T PRK12326 144 EALG-LTVGWITEESTPEERRAAY--ACDVTYASVNEIGFDVLRDQLVTDVADLVSPNPDVAIIDEADSVL 211 (764)
T ss_pred HhcC-CEEEEECCCCCHHHHHHHH--cCCCEEcCCcccccccchhhhccChHhhcCCccceeeecchhhhe
Confidence 8877 7888887776544333322 5899999987652 22221 122235678999999999875
|
|
| >KOG0388|consensus | Back alignment and domain information |
|---|
Probab=98.94 E-value=4.3e-08 Score=108.28 Aligned_cols=118 Identities=20% Similarity=0.348 Sum_probs=100.7
Q ss_pred hhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHHHHHHHHHHhhcCCCc-E
Q psy15524 635 KLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSVKSG-V 713 (930)
Q Consensus 635 ~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~v~~~F~~~~~~-v 713 (930)
..|+..|-.+|..... .+.++++|+.-.++.+.+.++|... ++.+..+.|.....+|..+..+|+..++- .
T Consensus 1027 SgKL~~LDeLL~kLka-----egHRvL~yfQMTkM~dl~EdYl~yr---~Y~ylRLDGSsk~~dRrd~vrDwQ~sdiFvF 1098 (1185)
T KOG0388|consen 1027 SGKLVVLDELLPKLKA-----EGHRVLMYFQMTKMIDLIEDYLVYR---GYTYLRLDGSSKASDRRDVVRDWQASDIFVF 1098 (1185)
T ss_pred ccceeeHHHHHHHhhc-----CCceEEehhHHHHHHHHHHHHHHhh---ccceEEecCcchhhHHHHHHhhccCCceEEE
Confidence 3455555555554322 3889999999999999999998864 88999999999999999999999987654 5
Q ss_pred EEeccccccccCCCCccEEEEecCCCChhhHHhhhcccccCCCCceE
Q psy15524 714 LICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSS 760 (930)
Q Consensus 714 Lv~T~~~~~GlDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~g~~ 760 (930)
|++|.+.+-||++.+.+.||.||..+++.--.|...||.|.|+....
T Consensus 1099 LLSTRAGGLGINLTAADTViFYdSDWNPT~D~QAMDRAHRLGQTrdv 1145 (1185)
T KOG0388|consen 1099 LLSTRAGGLGINLTAADTVIFYDSDWNPTADQQAMDRAHRLGQTRDV 1145 (1185)
T ss_pred EEecccCcccccccccceEEEecCCCCcchhhHHHHHHHhccCccce
Confidence 89999999999999999999999999999999999999999986543
|
|
| >KOG0386|consensus | Back alignment and domain information |
|---|
Probab=98.94 E-value=5.9e-09 Score=119.90 Aligned_cols=110 Identities=17% Similarity=0.335 Sum_probs=95.9
Q ss_pred CceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHHHHHHHHHHhhcCCC---cEEEeccccccccCCCCccEEE
Q psy15524 657 ESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSVKS---GVLICTDVAARGLDLPLVDWIV 733 (930)
Q Consensus 657 ~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~v~~~F~~~~~---~vLv~T~~~~~GlDip~v~~VI 733 (930)
+++++.||.-......+..+|.- +++.+..+.|....++|...++.|..... .+|.+|...+.|+|+...+.||
T Consensus 726 gHRVLlF~qMTrlmdimEdyL~~---~~~kYlRLDG~TK~~eRg~ll~~FN~Pds~yf~FllstragglglNlQtadtvi 802 (1157)
T KOG0386|consen 726 GHRVLLFSQMTRLMDILEDYLQI---REYKYLRLDGQTKVEERGDLLEIFNAPDSPYFIFLLSTRAGGLGLNLQTADTVI 802 (1157)
T ss_pred CcchhhHHHHHHHHHHHHHHHhh---hhhheeeecCCcchhhHHHHHHHhcCCCCceeeeeeeecccccccchhhcceEE
Confidence 78999999988888888777764 37889999999999999999999987654 4789999999999999999999
Q ss_pred EecCCCChhhHHhhhcccccCCCCceEEEEeCcccH
Q psy15524 734 QYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPSEV 769 (930)
Q Consensus 734 ~~~~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~e~ 769 (930)
.||..+++....|+--||.|.|+...+-++......
T Consensus 803 ifdsdwnp~~d~qaqdrahrigq~~evRv~rl~tv~ 838 (1157)
T KOG0386|consen 803 IFDSDWNPHQDLQAQDRAHRIGQKKEVRVLRLITVN 838 (1157)
T ss_pred EecCCCCchhHHHHHHHHHHhhchhheeeeeeehhh
Confidence 999999999999999999999998777666554433
|
|
| >PRK14873 primosome assembly protein PriA; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.4e-09 Score=127.29 Aligned_cols=145 Identities=12% Similarity=0.062 Sum_probs=100.4
Q ss_pred EEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHHhhhcCCceeEEeeCCC----chH
Q psy15524 24 LVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGE----KMK 99 (930)
Q Consensus 24 lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~----~~~ 99 (930)
+..+.+|||||.+|+-.+...+.. |.++|||+|.++|+.|+.++|++.+.. ..+..++++. ...
T Consensus 164 i~~~~~GSGKTevyl~~i~~~l~~---------Gk~vLvLvPEi~lt~q~~~rl~~~f~~---~~v~~lhS~l~~~~R~~ 231 (665)
T PRK14873 164 VWQALPGEDWARRLAAAAAATLRA---------GRGALVVVPDQRDVDRLEAALRALLGA---GDVAVLSAGLGPADRYR 231 (665)
T ss_pred HhhcCCCCcHHHHHHHHHHHHHHc---------CCeEEEEecchhhHHHHHHHHHHHcCC---CcEEEECCCCCHHHHHH
Confidence 344446999999999888777754 567999999999999999999988751 1233344443 344
Q ss_pred HHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEccccccccc---CcHHHHHHHHHHHhhcCCCceEEEEEee
Q psy15524 100 SEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQ---GYERDIAEFLEILKKQKPQFQSILLSAT 176 (930)
Q Consensus 100 ~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~---~~~~~~~~i~~~l~~~~~~~~~i~lSAT 176 (930)
.+.....+..+|+||| ++.-+.++.++++|||||-|.-.-. +.+...+. +..++....++.+|+.|||
T Consensus 232 ~w~~~~~G~~~IViGt--------RSAvFaP~~~LgLIIvdEEhd~sykq~~~p~yhaRd-vA~~Ra~~~~~~lvLgSaT 302 (665)
T PRK14873 232 RWLAVLRGQARVVVGT--------RSAVFAPVEDLGLVAIWDDGDDLLAEPRAPYPHARE-VALLRAHQHGCALLIGGHA 302 (665)
T ss_pred HHHHHhCCCCcEEEEc--------ceeEEeccCCCCEEEEEcCCchhhcCCCCCCccHHH-HHHHHHHHcCCcEEEECCC
Confidence 4555555668999999 5556677999999999999964321 11112222 2333344456789999999
Q ss_pred cCCCccccccccc
Q psy15524 177 LTPATCWCKHTET 189 (930)
Q Consensus 177 ~~~~~~~~~~~~~ 189 (930)
++-++++....+.
T Consensus 303 PSles~~~~~~g~ 315 (665)
T PRK14873 303 RTAEAQALVESGW 315 (665)
T ss_pred CCHHHHHHHhcCc
Confidence 9988766544333
|
|
| >smart00488 DEXDc2 DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.1e-08 Score=109.18 Aligned_cols=76 Identities=21% Similarity=0.185 Sum_probs=58.9
Q ss_pred CCCCCCCHHHHHhH----HhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHH
Q psy15524 410 MNITQVTTVQQLSI----QPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEI 485 (930)
Q Consensus 410 ~~~~~~~~iQ~~~i----~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~ 485 (930)
|.|. ++|.|.+.+ ..+..|+++++.||||+|||+++++|++..+...... ..+.+++|.++|..+..|....
T Consensus 5 FPy~-~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~---~~~~kvi~~t~T~~~~~q~i~~ 80 (289)
T smart00488 5 FPYE-PYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPER---IQKIKLIYLSRTVSEIEKRLEE 80 (289)
T ss_pred CCCC-CCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCccc---ccccceeEEeccHHHHHHHHHH
Confidence 5565 499999944 4455688899999999999999999999876652211 1234799999999999998777
Q ss_pred HHHh
Q psy15524 486 FTKL 489 (930)
Q Consensus 486 ~~~~ 489 (930)
+++.
T Consensus 81 l~~~ 84 (289)
T smart00488 81 LRKL 84 (289)
T ss_pred HHhc
Confidence 7665
|
|
| >smart00489 DEXDc3 DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.1e-08 Score=109.18 Aligned_cols=76 Identities=21% Similarity=0.185 Sum_probs=58.9
Q ss_pred CCCCCCCHHHHHhH----HhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHH
Q psy15524 410 MNITQVTTVQQLSI----QPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEI 485 (930)
Q Consensus 410 ~~~~~~~~iQ~~~i----~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~ 485 (930)
|.|. ++|.|.+.+ ..+..|+++++.||||+|||+++++|++..+...... ..+.+++|.++|..+..|....
T Consensus 5 FPy~-~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~---~~~~kvi~~t~T~~~~~q~i~~ 80 (289)
T smart00489 5 FPYE-PYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPER---IQKIKLIYLSRTVSEIEKRLEE 80 (289)
T ss_pred CCCC-CCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCccc---ccccceeEEeccHHHHHHHHHH
Confidence 5565 499999944 4455688899999999999999999999876652211 1234799999999999998777
Q ss_pred HHHh
Q psy15524 486 FTKL 489 (930)
Q Consensus 486 ~~~~ 489 (930)
+++.
T Consensus 81 l~~~ 84 (289)
T smart00489 81 LRKL 84 (289)
T ss_pred HHhc
Confidence 7665
|
|
| >PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=7.2e-08 Score=117.13 Aligned_cols=156 Identities=15% Similarity=0.207 Sum_probs=103.2
Q ss_pred cCcHHHHHHHHHhh----cCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHH
Q psy15524 5 QVTTVQQLSIQPIL----DGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKL 80 (930)
Q Consensus 5 ~l~~~Q~~ai~~~~----~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~ 80 (930)
+|.|+|.+.+..+. .|.+.|++-..|.|||+..+.. +..+...+ .....+|||+|. +++.|+.+++.++
T Consensus 169 ~Lr~YQleGlnWLi~l~~~g~gGILADEMGLGKTlQaIal-L~~L~~~~-----~~~gp~LIVvP~-SlL~nW~~Ei~kw 241 (1033)
T PLN03142 169 KMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISL-LGYLHEYR-----GITGPHMVVAPK-STLGNWMNEIRRF 241 (1033)
T ss_pred chHHHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHHHHH-HHHHHHhc-----CCCCCEEEEeCh-HHHHHHHHHHHHH
Confidence 68999999998764 5788999999999999975443 33443211 112348999995 6778899999988
Q ss_pred hhhcCCceeEEeeCCCchHHHH--H-HhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCcHHHHHHH
Q psy15524 81 CKSFTWIVPSWLTGGEKMKSEK--A-RIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEF 157 (930)
Q Consensus 81 ~~~~~~~~~~~~~g~~~~~~~~--~-~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~~~~~~~i 157 (930)
+. ...+..+.|........ . .....++|+|+|++.+...... +.--..++|||||||++-... ......
T Consensus 242 ~p---~l~v~~~~G~~~eR~~~~~~~~~~~~~dVvITSYe~l~~e~~~---L~k~~W~~VIvDEAHrIKN~~--Sklska 313 (1033)
T PLN03142 242 CP---VLRAVKFHGNPEERAHQREELLVAGKFDVCVTSFEMAIKEKTA---LKRFSWRYIIIDEAHRIKNEN--SLLSKT 313 (1033)
T ss_pred CC---CCceEEEeCCHHHHHHHHHHHhcccCCCcceecHHHHHHHHHH---hccCCCCEEEEcCccccCCHH--HHHHHH
Confidence 64 35555566654322221 1 1234589999999998764322 222357899999999985432 223344
Q ss_pred HHHHhhcCCCceEEEEEeecCC
Q psy15524 158 LEILKKQKPQFQSILLSATLTP 179 (930)
Q Consensus 158 ~~~l~~~~~~~~~i~lSAT~~~ 179 (930)
+..+.. ...++||+||-.
T Consensus 314 lr~L~a----~~RLLLTGTPlq 331 (1033)
T PLN03142 314 MRLFST----NYRLLITGTPLQ 331 (1033)
T ss_pred HHHhhc----CcEEEEecCCCC
Confidence 444432 257899999954
|
|
| >KOG4439|consensus | Back alignment and domain information |
|---|
Probab=98.87 E-value=9.2e-08 Score=106.22 Aligned_cols=122 Identities=11% Similarity=0.206 Sum_probs=85.8
Q ss_pred chhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHHHHHHHHHHhhc--CCC
Q psy15524 634 PKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRS--VKS 711 (930)
Q Consensus 634 ~~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~v~~~F~~--~~~ 711 (930)
+.-|+......+...... ...+++|...=......+...+++ .|..+..+||.....+|..+.+.|.. |..
T Consensus 727 ~S~Ki~~~l~~le~i~~~----skeK~viVSQwtsvLniv~~hi~~---~g~~y~si~Gqv~vK~Rq~iv~~FN~~k~~~ 799 (901)
T KOG4439|consen 727 PSCKIAMVLEILETILTS----SKEKVVIVSQWTSVLNIVRKHIQK---GGHIYTSITGQVLVKDRQEIVDEFNQEKGGA 799 (901)
T ss_pred chhHHHHHHHHHHHHhhc----ccceeeehhHHHHHHHHHHHHHhh---CCeeeeeecCccchhHHHHHHHHHHhccCCc
Confidence 334444444444433111 145665533222222333344444 37889999999999999999999974 434
Q ss_pred cE-EEeccccccccCCCCccEEEEecCCCChhhHHhhhcccccCCCCceEEE
Q psy15524 712 GV-LICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLL 762 (930)
Q Consensus 712 ~v-Lv~T~~~~~GlDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~g~~~~ 762 (930)
+| |++-.+-+.|+|+-+.+++|..|+.+++.---|..-|.-|.|+....++
T Consensus 800 rVmLlSLtAGGVGLNL~GaNHlilvDlHWNPaLEqQAcDRIYR~GQkK~V~I 851 (901)
T KOG4439|consen 800 RVMLLSLTAGGVGLNLIGANHLILVDLHWNPALEQQACDRIYRMGQKKDVFI 851 (901)
T ss_pred eEEEEEEccCcceeeecccceEEEEecccCHHHHHHHHHHHHHhcccCceEE
Confidence 45 5666777899999999999999999999999999999999998776654
|
|
| >PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated | Back alignment and domain information |
|---|
Probab=98.87 E-value=2.1e-08 Score=121.57 Aligned_cols=82 Identities=26% Similarity=0.372 Sum_probs=60.2
Q ss_pred CCccCcHHHHHHHHHh----hcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHH-HH
Q psy15524 2 NITQVTTVQQLSIQPI----LDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTL-EI 76 (930)
Q Consensus 2 g~~~l~~~Q~~ai~~~----~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~-~~ 76 (930)
|| ++++.|.+....+ .++..+++.|+||+|||++|++|++... .+.++||++||++|+.|+. +.
T Consensus 243 ~~-e~R~~Q~~ma~~V~~~l~~~~~~~~eA~tGtGKT~ayllp~l~~~----------~~~~vvI~t~T~~Lq~Ql~~~~ 311 (820)
T PRK07246 243 GL-EERPKQESFAKLVGEDFHDGPASFIEAQTGIGKTYGYLLPLLAQS----------DQRQIIVSVPTKILQDQIMAEE 311 (820)
T ss_pred CC-ccCHHHHHHHHHHHHHHhCCCcEEEECCCCCcHHHHHHHHHHHhc----------CCCcEEEEeCcHHHHHHHHHHH
Confidence 45 4899999955443 3577899999999999999999988653 1356999999999999995 55
Q ss_pred HHHHhhhcCCceeEEeeCC
Q psy15524 77 FTKLCKSFTWIVPSWLTGG 95 (930)
Q Consensus 77 ~~~~~~~~~~~~~~~~~g~ 95 (930)
+..+...++ +....+.|+
T Consensus 312 i~~l~~~~~-~~~~~~kg~ 329 (820)
T PRK07246 312 VKAIQEVFH-IDCHSLKGP 329 (820)
T ss_pred HHHHHHhcC-CcEEEEECC
Confidence 666554433 333344443
|
|
| >COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.82 E-value=2.4e-07 Score=109.72 Aligned_cols=152 Identities=21% Similarity=0.192 Sum_probs=93.5
Q ss_pred HHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHHhhhcCCce
Q psy15524 9 VQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIV 88 (930)
Q Consensus 9 ~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~ 88 (930)
...+.+.++.+..-+++++|||||||...=.-+++... ..+.++.+.-|.|-=|..+++++.+....-..-.
T Consensus 54 ~~~~i~~ai~~~~vvii~getGsGKTTqlP~~lle~g~--------~~~g~I~~tQPRRlAArsvA~RvAeel~~~~G~~ 125 (845)
T COG1643 54 VRDEILKAIEQNQVVIIVGETGSGKTTQLPQFLLEEGL--------GIAGKIGCTQPRRLAARSVAERVAEELGEKLGET 125 (845)
T ss_pred HHHHHHHHHHhCCEEEEeCCCCCChHHHHHHHHHhhhc--------ccCCeEEecCchHHHHHHHHHHHHHHhCCCcCce
Confidence 34445555666777999999999999854333433321 2345678888999878888887766654322122
Q ss_pred eEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEccccc-ccccCcHHHHHHHHHH-HhhcCC
Q psy15524 89 PSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADR-ILDQGYERDIAEFLEI-LKKQKP 166 (930)
Q Consensus 89 ~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~-~~~~~~~~~~~~i~~~-l~~~~~ 166 (930)
++.-.-.+ ........|-+.|.+.|+..+.+. ..++.+++|||||+|. -++..+ +..++.. +...++
T Consensus 126 VGY~iRfe------~~~s~~Trik~mTdGiLlrei~~D--~~Ls~ys~vIiDEaHERSl~tDi---lLgllk~~~~~rr~ 194 (845)
T COG1643 126 VGYSIRFE------SKVSPRTRIKVMTDGILLREIQND--PLLSGYSVVIIDEAHERSLNTDI---LLGLLKDLLARRRD 194 (845)
T ss_pred eeEEEEee------ccCCCCceeEEeccHHHHHHHhhC--cccccCCEEEEcchhhhhHHHHH---HHHHHHHHHhhcCC
Confidence 32222111 112345689999999999998753 3489999999999994 121111 1122222 233344
Q ss_pred CceEEEEEeecCC
Q psy15524 167 QFQSILLSATLTP 179 (930)
Q Consensus 167 ~~~~i~lSAT~~~ 179 (930)
+.++|.+|||+..
T Consensus 195 DLKiIimSATld~ 207 (845)
T COG1643 195 DLKLIIMSATLDA 207 (845)
T ss_pred CceEEEEecccCH
Confidence 5677777777653
|
|
| >smart00488 DEXDc2 DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Probab=98.81 E-value=4.6e-08 Score=104.33 Aligned_cols=72 Identities=22% Similarity=0.195 Sum_probs=57.1
Q ss_pred CcHHHHHHH----HHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHH
Q psy15524 6 VTTVQQLSI----QPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKL 80 (930)
Q Consensus 6 l~~~Q~~ai----~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~ 80 (930)
++|.|.+.+ ..+.+|.++++.||||+|||++|++|++..+...... ..+.+++|.++|.++..|....+++.
T Consensus 9 ~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~---~~~~kvi~~t~T~~~~~q~i~~l~~~ 84 (289)
T smart00488 9 PYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPER---IQKIKLIYLSRTVSEIEKRLEELRKL 84 (289)
T ss_pred CCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCccc---ccccceeEEeccHHHHHHHHHHHHhc
Confidence 699999944 4456789999999999999999999999877642221 02347999999999988887777665
|
|
| >smart00489 DEXDc3 DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Probab=98.81 E-value=4.6e-08 Score=104.33 Aligned_cols=72 Identities=22% Similarity=0.195 Sum_probs=57.1
Q ss_pred CcHHHHHHH----HHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHH
Q psy15524 6 VTTVQQLSI----QPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKL 80 (930)
Q Consensus 6 l~~~Q~~ai----~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~ 80 (930)
++|.|.+.+ ..+.+|.++++.||||+|||++|++|++..+...... ..+.+++|.++|.++..|....+++.
T Consensus 9 ~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~---~~~~kvi~~t~T~~~~~q~i~~l~~~ 84 (289)
T smart00489 9 PYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPER---IQKIKLIYLSRTVSEIEKRLEELRKL 84 (289)
T ss_pred CCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCccc---ccccceeEEeccHHHHHHHHHHHHhc
Confidence 699999944 4456789999999999999999999999877642221 02347999999999988887777665
|
|
| >PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain | Back alignment and domain information |
|---|
Probab=98.80 E-value=2e-08 Score=91.60 Aligned_cols=138 Identities=16% Similarity=0.165 Sum_probs=80.3
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHHhhhcCCceeEEeeCCCch
Q psy15524 19 DGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKM 98 (930)
Q Consensus 19 ~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~ 98 (930)
+|+-.++-..+|+|||--.+--++..-.. .+.++|||.|||.++..+.+.++... +.+ ......
T Consensus 3 kg~~~~~d~hpGaGKTr~vlp~~~~~~i~--------~~~rvLvL~PTRvva~em~~aL~~~~-----~~~--~t~~~~- 66 (148)
T PF07652_consen 3 KGELTVLDLHPGAGKTRRVLPEIVREAIK--------RRLRVLVLAPTRVVAEEMYEALKGLP-----VRF--HTNARM- 66 (148)
T ss_dssp TTEEEEEE--TTSSTTTTHHHHHHHHHHH--------TT--EEEEESSHHHHHHHHHHTTTSS-----EEE--ESTTSS-
T ss_pred CCceeEEecCCCCCCcccccHHHHHHHHH--------ccCeEEEecccHHHHHHHHHHHhcCC-----ccc--Cceeee-
Confidence 45567889999999999755544443332 25669999999999999998875432 111 111110
Q ss_pred HHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCcHHHHHHHHHHHhhcCCCceEEEEEeecC
Q psy15524 99 KSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLT 178 (930)
Q Consensus 99 ~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~~~~~~~i~~~l~~~~~~~~~i~lSAT~~ 178 (930)
. ...++.-|-++|...+...+.+ .....+.+++|+||+|..-.+. -..+..+..+... ..+.+|++||||+
T Consensus 67 ~----~~~g~~~i~vMc~at~~~~~~~--p~~~~~yd~II~DEcH~~Dp~s--IA~rg~l~~~~~~-g~~~~i~mTATPP 137 (148)
T PF07652_consen 67 R----THFGSSIIDVMCHATYGHFLLN--PCRLKNYDVIIMDECHFTDPTS--IAARGYLRELAES-GEAKVIFMTATPP 137 (148)
T ss_dssp --------SSSSEEEEEHHHHHHHHHT--SSCTTS-SEEEECTTT--SHHH--HHHHHHHHHHHHT-TS-EEEEEESS-T
T ss_pred c----cccCCCcccccccHHHHHHhcC--cccccCccEEEEeccccCCHHH--HhhheeHHHhhhc-cCeeEEEEeCCCC
Confidence 0 1123455788888888877764 3446899999999999753222 1222333333332 3468999999998
Q ss_pred CCc
Q psy15524 179 PAT 181 (930)
Q Consensus 179 ~~~ 181 (930)
...
T Consensus 138 G~~ 140 (148)
T PF07652_consen 138 GSE 140 (148)
T ss_dssp T--
T ss_pred CCC
Confidence 755
|
The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A .... |
| >COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.5e-06 Score=106.97 Aligned_cols=139 Identities=23% Similarity=0.198 Sum_probs=92.4
Q ss_pred CcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHHHHhhccCCCcceEEEeCCCchHH
Q psy15524 430 GDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKS 509 (930)
Q Consensus 430 ~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~ 509 (930)
+..+|.--||||||++... +.+.+... ...+.+++|+-.++|-.|+.+.+..+....... + ...+...
T Consensus 274 ~~G~IWHtqGSGKTlTm~~-~A~~l~~~------~~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~~~~-~----~~~s~~~ 341 (962)
T COG0610 274 KGGYIWHTQGSGKTLTMFK-LARLLLEL------PKNPKVLFVVDRKDLDDQTSDEFQSFGKVAFND-P----KAESTSE 341 (962)
T ss_pred CceEEEeecCCchHHHHHH-HHHHHHhc------cCCCeEEEEechHHHHHHHHHHHHHHHHhhhhc-c----cccCHHH
Confidence 3489999999999998443 33444432 457889999999999999999999887543211 1 2334444
Q ss_pred HHHHHhcC-CcEEEECchhHHHhhhccCCc-ccccceEEEEecchhhhhcCcHHHHHHHHHHHhhcCccceEEEEccccC
Q psy15524 510 EKARIRKG-ISILVATPGRLLDHCKHTETL-KFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLT 587 (930)
Q Consensus 510 ~~~~~~~~-~~Ilv~Tp~rl~~~l~~~~~~-~~~~l~~lVlDEah~l~~~g~~~~l~~i~~~l~~~~~~~q~vl~SAT~~ 587 (930)
....+..+ ..|+|+|-.++-......... .-++=-++|+|||||- .++..-..+...++ +...++||+|+-
T Consensus 342 Lk~~l~~~~~~ii~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaHRS---Q~G~~~~~~~~~~~----~a~~~gFTGTPi 414 (962)
T COG0610 342 LKELLEDGKGKIIVTTIQKFNKAVKEDELELLKRKNVVVIIDEAHRS---QYGELAKLLKKALK----KAIFIGFTGTPI 414 (962)
T ss_pred HHHHHhcCCCcEEEEEecccchhhhcccccccCCCcEEEEEechhhc---cccHHHHHHHHHhc----cceEEEeeCCcc
Confidence 44555544 489999999987666543111 1122237899999974 33444444444554 578899999975
|
|
| >KOG0920|consensus | Back alignment and domain information |
|---|
Probab=98.73 E-value=5.8e-07 Score=106.10 Aligned_cols=158 Identities=22% Similarity=0.255 Sum_probs=107.0
Q ss_pred cHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHHhhhcCC
Q psy15524 7 TTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTW 86 (930)
Q Consensus 7 ~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~ 86 (930)
+..+++.+.++.+..-++|++.||+|||.-.---+++...... ....+++--|.|--|..++++....-.....
T Consensus 175 ~~~r~~Il~~i~~~qVvvIsGeTGcGKTTQvpQfiLd~~~~~~------~~~~IicTQPRRIsAIsvAeRVa~ER~~~~g 248 (924)
T KOG0920|consen 175 YKMRDTILDAIEENQVVVISGETGCGKTTQVPQFILDEAIESG------AACNIICTQPRRISAISVAERVAKERGESLG 248 (924)
T ss_pred HHHHHHHHHHHHhCceEEEeCCCCCCchhhhhHHHHHHHHhcC------CCCeEEecCCchHHHHHHHHHHHHHhccccC
Confidence 4566777788888889999999999999865545555543322 3455788889998888888876544322221
Q ss_pred ceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEccccccc-ccCcHHHHHHHHHHHhhcC
Q psy15524 87 IVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRIL-DQGYERDIAEFLEILKKQK 165 (930)
Q Consensus 87 ~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~-~~~~~~~~~~i~~~l~~~~ 165 (930)
..++.-.+..+ .......+++||.+.|++.+.. .-.+.++.++|+||+|.=. +..| +..++..+-..+
T Consensus 249 ~~VGYqvrl~~------~~s~~t~L~fcTtGvLLr~L~~--~~~l~~vthiivDEVHER~i~~Df---lLi~lk~lL~~~ 317 (924)
T KOG0920|consen 249 EEVGYQVRLES------KRSRETRLLFCTTGVLLRRLQS--DPTLSGVTHIIVDEVHERSINTDF---LLILLKDLLPRN 317 (924)
T ss_pred CeeeEEEeeec------ccCCceeEEEecHHHHHHHhcc--CcccccCceeeeeeEEEccCCccc---HHHHHHHHhhhC
Confidence 33332222221 1122367999999999999875 4458899999999999532 2222 334445555566
Q ss_pred CCceEEEEEeecCCCc
Q psy15524 166 PQFQSILLSATLTPAT 181 (930)
Q Consensus 166 ~~~~~i~lSAT~~~~~ 181 (930)
|+.++|+||||+....
T Consensus 318 p~LkvILMSAT~dae~ 333 (924)
T KOG0920|consen 318 PDLKVILMSATLDAEL 333 (924)
T ss_pred CCceEEEeeeecchHH
Confidence 9999999999998543
|
|
| >PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e | Back alignment and domain information |
|---|
Probab=98.72 E-value=4.2e-08 Score=106.78 Aligned_cols=146 Identities=22% Similarity=0.233 Sum_probs=80.1
Q ss_pred CCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHHHHhhccCCCcceEEEeCCCc-h
Q psy15524 429 GGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEK-M 507 (930)
Q Consensus 429 ~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~-~ 507 (930)
.+.++++..+|+|||+..+..+ ..+...... .....+|||+|. .+..||..++.+++.... .. .....|.. .
T Consensus 25 ~~g~lL~de~GlGKT~~~i~~~-~~l~~~~~~---~~~~~~LIv~P~-~l~~~W~~E~~~~~~~~~-~~-v~~~~~~~~~ 97 (299)
T PF00176_consen 25 PRGGLLADEMGLGKTITAIALI-SYLKNEFPQ---RGEKKTLIVVPS-SLLSQWKEEIEKWFDPDS-LR-VIIYDGDSER 97 (299)
T ss_dssp T-EEEE---TTSSHHHHHHHHH-HHHHHCCTT---SS-S-EEEEE-T-TTHHHHHHHHHHHSGT-T-S--EEEESSSCHH
T ss_pred CCCEEEEECCCCCchhhhhhhh-hhhhhcccc---ccccceeEeecc-chhhhhhhhhcccccccc-cc-cccccccccc
Confidence 3569999999999999855444 344332110 112259999999 888999999999885322 22 33344433 2
Q ss_pred HHHHHHHhcCCcEEEECchhHHHhhh--ccCCcccccceEEEEecchhhhhcCcHHHHHHHHHHHhhcCccceEEEEccc
Q psy15524 508 KSEKARIRKGISILVATPGRLLDHCK--HTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSAT 585 (930)
Q Consensus 508 ~~~~~~~~~~~~Ilv~Tp~rl~~~l~--~~~~~~~~~l~~lVlDEah~l~~~g~~~~l~~i~~~l~~~~~~~q~vl~SAT 585 (930)
...........+++|+|.+.+...-. ....+..-++++||+||+|.+-+.+. ... ..+.... ....+++|||
T Consensus 98 ~~~~~~~~~~~~vvi~ty~~~~~~~~~~~~~~l~~~~~~~vIvDEaH~~k~~~s--~~~---~~l~~l~-~~~~~lLSgT 171 (299)
T PF00176_consen 98 RRLSKNQLPKYDVVITTYETLRKARKKKDKEDLKQIKWDRVIVDEAHRLKNKDS--KRY---KALRKLR-ARYRWLLSGT 171 (299)
T ss_dssp HHTTSSSCCCSSEEEEEHHHHH--TSTHTTHHHHTSEEEEEEETTGGGGTTTTS--HHH---HHHHCCC-ECEEEEE-SS
T ss_pred ccccccccccceeeeccccccccccccccccccccccceeEEEecccccccccc--ccc---ccccccc-cceEEeeccc
Confidence 22122223458899999998871100 11112223489999999999844332 122 2222222 5567899999
Q ss_pred cC
Q psy15524 586 LT 587 (930)
Q Consensus 586 ~~ 587 (930)
+-
T Consensus 172 P~ 173 (299)
T PF00176_consen 172 PI 173 (299)
T ss_dssp -S
T ss_pred cc
Confidence 74
|
g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W. |
| >COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.71 E-value=1.7e-07 Score=118.19 Aligned_cols=120 Identities=20% Similarity=0.338 Sum_probs=100.2
Q ss_pred hhHHHHHHHH-HhhccCCCcCCCc--eEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHHHHHHHHHHhhcC--C
Q psy15524 636 LRLVALASFI-LGKCQNVNEDEES--KMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSV--K 710 (930)
Q Consensus 636 ~~~~~l~~~l-~~~~~~~~~~~~~--k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~v~~~F~~~--~ 710 (930)
.+...+..++ ..... .+. ++++|.......+.+...+... ++.+..++|+++..+|...++.|.++ .
T Consensus 692 ~k~~~l~~ll~~~~~~-----~~~~~kvlifsq~t~~l~il~~~l~~~---~~~~~~ldG~~~~~~r~~~i~~f~~~~~~ 763 (866)
T COG0553 692 GKLQALDELLLDKLLE-----EGHYHKVLIFSQFTPVLDLLEDYLKAL---GIKYVRLDGSTPAKRRQELIDRFNADEEE 763 (866)
T ss_pred hHHHHHHHHHHHHHHh-----hcccccEEEEeCcHHHHHHHHHHHHhc---CCcEEEEeCCCChhhHHHHHHHhhcCCCC
Confidence 4566666666 22221 145 9999999999999999888875 46789999999999999999999986 4
Q ss_pred CcEEEeccccccccCCCCccEEEEecCCCChhhHHhhhcccccCCCCceEEEE
Q psy15524 711 SGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLF 763 (930)
Q Consensus 711 ~~vLv~T~~~~~GlDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~g~~~~~ 763 (930)
.-++++|.+.+.|+|+...++||++|+.+++....|...|+.|.|+...+.++
T Consensus 764 ~v~lls~kagg~glnLt~a~~vi~~d~~wnp~~~~Qa~dRa~RigQ~~~v~v~ 816 (866)
T COG0553 764 KVFLLSLKAGGLGLNLTGADTVILFDPWWNPAVELQAIDRAHRIGQKRPVKVY 816 (866)
T ss_pred ceEEEEecccccceeecccceEEEeccccChHHHHHHHHHHHHhcCcceeEEE
Confidence 45788889999999999999999999999999999999999999987655443
|
|
| >PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e | Back alignment and domain information |
|---|
Probab=98.65 E-value=6.4e-08 Score=105.31 Aligned_cols=159 Identities=21% Similarity=0.198 Sum_probs=89.3
Q ss_pred HHHHHHHHhh-------------cCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHH
Q psy15524 9 VQQLSIQPIL-------------DGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLE 75 (930)
Q Consensus 9 ~Q~~ai~~~~-------------~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~ 75 (930)
+|.+++..++ ..+..+++-..|.|||...+..+. .+...... .....+|||+|. .+..|+.+
T Consensus 1 ~Q~~~v~~m~~~~~~~~~~~~~~~~~g~lL~de~GlGKT~~~i~~~~-~l~~~~~~---~~~~~~LIv~P~-~l~~~W~~ 75 (299)
T PF00176_consen 1 HQLEAVRWMLDRELVEEYPNSESPPRGGLLADEMGLGKTITAIALIS-YLKNEFPQ---RGEKKTLIVVPS-SLLSQWKE 75 (299)
T ss_dssp HHHHHHHHHHHHH----TTSSSTTT-EEEE---TTSSHHHHHHHHHH-HHHHCCTT---SS-S-EEEEE-T-TTHHHHHH
T ss_pred CHHHHHHHHHHHhhhhcccccccCCCCEEEEECCCCCchhhhhhhhh-hhhhcccc---ccccceeEeecc-chhhhhhh
Confidence 5777777653 235699999999999988665554 33331111 111249999999 88899999
Q ss_pred HHHHHhhhcCCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHh--cCCCccCCCccEEEEcccccccccCcHHH
Q psy15524 76 IFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCK--HTETLKFSKVEHLVLDEADRILDQGYERD 153 (930)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~--~~~~~~l~~l~~vViDE~h~~~~~~~~~~ 153 (930)
++.+++.... ..+..+.|...............+++|+|.+.+..... ....+.--+.++||+||+|.+-+... .
T Consensus 76 E~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~~~~~~l~~~~~~~vIvDEaH~~k~~~s--~ 152 (299)
T PF00176_consen 76 EIEKWFDPDS-LRVIIYDGDSERRRLSKNQLPKYDVVITTYETLRKARKKKDKEDLKQIKWDRVIVDEAHRLKNKDS--K 152 (299)
T ss_dssp HHHHHSGT-T-S-EEEESSSCHHHHTTSSSCCCSSEEEEEHHHHH--TSTHTTHHHHTSEEEEEEETTGGGGTTTTS--H
T ss_pred hhcccccccc-ccccccccccccccccccccccceeeeccccccccccccccccccccccceeEEEecccccccccc--c
Confidence 9999985322 34444444441222222233457899999999881100 00111123489999999999843322 1
Q ss_pred HHHHHHHHhhcCCCceEEEEEeecCC
Q psy15524 154 IAEFLEILKKQKPQFQSILLSATLTP 179 (930)
Q Consensus 154 ~~~i~~~l~~~~~~~~~i~lSAT~~~ 179 (930)
....+..+. ...++++||||-.
T Consensus 153 ~~~~l~~l~----~~~~~lLSgTP~~ 174 (299)
T PF00176_consen 153 RYKALRKLR----ARYRWLLSGTPIQ 174 (299)
T ss_dssp HHHHHHCCC----ECEEEEE-SS-SS
T ss_pred ccccccccc----cceEEeecccccc
Confidence 122222232 4478999999864
|
g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W. |
| >KOG1123|consensus | Back alignment and domain information |
|---|
Probab=98.64 E-value=7e-08 Score=102.90 Aligned_cols=151 Identities=19% Similarity=0.201 Sum_probs=104.8
Q ss_pred cCcHHHHHHHHHhhc-C--CcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHHh
Q psy15524 5 QVTTVQQLSIQPILD-G--GDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLC 81 (930)
Q Consensus 5 ~l~~~Q~~ai~~~~~-g--~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~ 81 (930)
.++|+|+.++..+.. | ++-+|+.|-|+|||++-+-++... ...+|||+.+---+.|+...|..|+
T Consensus 302 ~iRpYQEksL~KMFGNgRARSGiIVLPCGAGKtLVGvTAa~ti------------kK~clvLcts~VSVeQWkqQfk~ws 369 (776)
T KOG1123|consen 302 QIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVGVTAACTI------------KKSCLVLCTSAVSVEQWKQQFKQWS 369 (776)
T ss_pred ccCchHHHHHHHHhCCCcccCceEEEecCCCCceeeeeeeeee------------cccEEEEecCccCHHHHHHHHHhhc
Confidence 589999999999873 4 478999999999999876655421 1239999999999999999999887
Q ss_pred hhcCCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcC-------CCccCCCccEEEEcccccccccCcHHHH
Q psy15524 82 KSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHT-------ETLKFSKVEHLVLDEADRILDQGYERDI 154 (930)
Q Consensus 82 ~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~-------~~~~l~~l~~vViDE~h~~~~~~~~~~~ 154 (930)
.-.+...+ ..+.+. ......++.|+|+|..++...-.++ .++.-...+++|+||+|.+...-|
T Consensus 370 ti~d~~i~-rFTsd~-----Ke~~~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~~EWGllllDEVHvvPA~MF---- 439 (776)
T KOG1123|consen 370 TIQDDQIC-RFTSDA-----KERFPSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRGREWGLLLLDEVHVVPAKMF---- 439 (776)
T ss_pred ccCccceE-Eeeccc-----cccCCCCCcEEEEeeehhhhcccccHHHHHHHHHHhcCeeeeEEeehhccchHHHH----
Confidence 64443222 233222 1234567899999987764332221 112235678999999999875444
Q ss_pred HHHHHHHhhcCCCceEEEEEeecCCCc
Q psy15524 155 AEFLEILKKQKPQFQSILLSATLTPAT 181 (930)
Q Consensus 155 ~~i~~~l~~~~~~~~~i~lSAT~~~~~ 181 (930)
++++.....++ -+|||||+-++.
T Consensus 440 RRVlsiv~aHc----KLGLTATLvRED 462 (776)
T KOG1123|consen 440 RRVLSIVQAHC----KLGLTATLVRED 462 (776)
T ss_pred HHHHHHHHHHh----hccceeEEeecc
Confidence 55555555554 589999996643
|
|
| >PRK13103 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=98.58 E-value=1.6e-07 Score=110.34 Aligned_cols=131 Identities=18% Similarity=0.197 Sum_probs=95.7
Q ss_pred cCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHHhhhc
Q psy15524 5 QVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSF 84 (930)
Q Consensus 5 ~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~ 84 (930)
.++++|--. .+.-...-+..+.||+|||+++.+|++-.... |..+-+++|+--||.+-++.+..+...+
T Consensus 82 ~~ydVQliG--g~~Lh~G~iaEM~TGEGKTLvA~l~a~l~al~---------G~~VhvvT~ndyLA~RD~e~m~~l~~~l 150 (913)
T PRK13103 82 RHFDVQLIG--GMTLHEGKIAEMRTGEGKTLVGTLAVYLNALS---------GKGVHVVTVNDYLARRDANWMRPLYEFL 150 (913)
T ss_pred CcchhHHHh--hhHhccCccccccCCCCChHHHHHHHHHHHHc---------CCCEEEEeCCHHHHHHHHHHHHHHhccc
Confidence 356666543 33334457899999999999999999866654 5669999999999999999999999877
Q ss_pred CCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHH-HHHHhcC-----CCccCCCccEEEEccccccc-ccC
Q psy15524 85 TWIVPSWLTGGEKMKSEKARIRKGISILVATPGRL-LDHCKHT-----ETLKFSKVEHLVLDEADRIL-DQG 149 (930)
Q Consensus 85 ~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l-~~~l~~~-----~~~~l~~l~~vViDE~h~~~-~~~ 149 (930)
+ +.++++.++.......... .+||++||..-+ .+.|+.. .....+.+.+.||||+|.++ |..
T Consensus 151 G-l~v~~i~~~~~~~err~~Y--~~dI~YGT~~e~gFDYLrD~~~~~~~~~vqr~l~~aIVDEvDsiLIDEA 219 (913)
T PRK13103 151 G-LSVGIVTPFQPPEEKRAAY--AADITYGTNNEFGFDYLRDNMAFSLDDKFQRELNFAVIDEVDSILIDEA 219 (913)
T ss_pred C-CEEEEECCCCCHHHHHHHh--cCCEEEEcccccccchhhccceechhhhcccccceeEechhhheecccc
Confidence 7 7888887776554443333 289999998775 2222221 11224889999999999875 443
|
|
| >KOG0922|consensus | Back alignment and domain information |
|---|
Probab=98.57 E-value=3.1e-06 Score=94.81 Aligned_cols=147 Identities=24% Similarity=0.250 Sum_probs=89.2
Q ss_pred HHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHHhhh-cCCceeE
Q psy15524 12 LSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKS-FTWIVPS 90 (930)
Q Consensus 12 ~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~-~~~~~~~ 90 (930)
+.+..+..++-++|.++||||||.- +| +.+.+.. ....+++.+.-|.|-=|..++++....... ++ -.++
T Consensus 58 ~il~~ve~nqvlIviGeTGsGKSTQ--ip--QyL~eaG----~~~~g~I~~TQPRRVAavslA~RVAeE~~~~lG-~~VG 128 (674)
T KOG0922|consen 58 QILYAVEDNQVLIVIGETGSGKSTQ--IP--QYLAEAG----FASSGKIACTQPRRVAAVSLAKRVAEEMGCQLG-EEVG 128 (674)
T ss_pred HHHHHHHHCCEEEEEcCCCCCcccc--Hh--HHHHhcc----cccCCcEEeecCchHHHHHHHHHHHHHhCCCcC-ceee
Confidence 4445555677799999999999973 33 3333211 112233777889998888888876554432 22 1222
Q ss_pred EeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccC-cHHHHHHHHHHHhhcCCCce
Q psy15524 91 WLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQG-YERDIAEFLEILKKQKPQFQ 169 (930)
Q Consensus 91 ~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~-~~~~~~~i~~~l~~~~~~~~ 169 (930)
...-=+ ........|.+.|-+.|++.+.. .-.+++.++|||||||. -. .-+.+-.++..+-..+++.+
T Consensus 129 Y~IRFe------d~ts~~TrikymTDG~LLRE~l~--Dp~LskYsvIIlDEAHE---Rsl~TDiLlGlLKki~~~R~~Lk 197 (674)
T KOG0922|consen 129 YTIRFE------DSTSKDTRIKYMTDGMLLREILK--DPLLSKYSVIILDEAHE---RSLHTDILLGLLKKILKKRPDLK 197 (674)
T ss_pred eEEEec------ccCCCceeEEEecchHHHHHHhc--CCccccccEEEEechhh---hhhHHHHHHHHHHHHHhcCCCce
Confidence 111000 01122467999999999987764 23478999999999993 11 11233344555555556667
Q ss_pred EEEEEeecC
Q psy15524 170 SILLSATLT 178 (930)
Q Consensus 170 ~i~lSAT~~ 178 (930)
+|.+|||+.
T Consensus 198 lIimSATld 206 (674)
T KOG0922|consen 198 LIIMSATLD 206 (674)
T ss_pred EEEEeeeec
Confidence 777777764
|
|
| >PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated | Back alignment and domain information |
|---|
Probab=98.55 E-value=7.2e-07 Score=110.48 Aligned_cols=63 Identities=30% Similarity=0.334 Sum_probs=52.0
Q ss_pred cCcHHHHHHHHHh----hcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHH
Q psy15524 5 QVTTVQQLSIQPI----LDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLE 75 (930)
Q Consensus 5 ~l~~~Q~~ai~~~----~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~ 75 (930)
+++|-|.+.+..+ ..++.+++.||||+|||++|++|++..... .+.+++|-++|++|..|+..
T Consensus 257 e~R~~Q~~m~~~v~~~l~~~~~~~iEA~TGtGKTlaYLlpa~~~a~~--------~~~~vvIsT~T~~LQ~Ql~~ 323 (928)
T PRK08074 257 EKREGQQEMMKEVYTALRDSEHALIEAGTGTGKSLAYLLPAAYFAKK--------KEEPVVISTYTIQLQQQLLE 323 (928)
T ss_pred cCCHHHHHHHHHHHHHHhcCCCEEEECCCCCchhHHHHHHHHHHhhc--------cCCeEEEEcCCHHHHHHHHH
Confidence 5899999966554 357789999999999999999999865532 24569999999999999876
|
|
| >PRK12902 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=98.49 E-value=2.3e-06 Score=100.07 Aligned_cols=127 Identities=19% Similarity=0.175 Sum_probs=93.4
Q ss_pred CcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHHhhhcC
Q psy15524 6 VTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFT 85 (930)
Q Consensus 6 l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~ 85 (930)
|++.|--.--.+ ...-+..+.||.|||+++.+|++-.... |..+-|+.+.--||..=++.+..+...++
T Consensus 86 ~ydVQliGgl~L--h~G~IAEM~TGEGKTL~atlpaylnAL~---------GkgVhVVTvNdYLA~RDae~m~~vy~~LG 154 (939)
T PRK12902 86 HFDVQLIGGMVL--HEGQIAEMKTGEGKTLVATLPSYLNALT---------GKGVHVVTVNDYLARRDAEWMGQVHRFLG 154 (939)
T ss_pred cchhHHHhhhhh--cCCceeeecCCCChhHHHHHHHHHHhhc---------CCCeEEEeCCHHHHHhHHHHHHHHHHHhC
Confidence 555555443333 4457999999999999999998765543 45599999999999999999999988777
Q ss_pred CceeEEeeCCCchHHHHHHhcCCCcEEEEChHHH-----HHHHhc-CCCccCCCccEEEEccccccc
Q psy15524 86 WIVPSWLTGGEKMKSEKARIRKGISILVATPGRL-----LDHCKH-TETLKFSKVEHLVLDEADRIL 146 (930)
Q Consensus 86 ~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l-----~~~l~~-~~~~~l~~l~~vViDE~h~~~ 146 (930)
+.+++..++..... +...-.+||++||+..+ .+.+.. ......+.+.+.||||+|.++
T Consensus 155 -Ltvg~i~~~~~~~e--rr~aY~~DItYgTn~e~gFDYLRDnm~~~~~~~vqR~~~faIVDEvDSIL 218 (939)
T PRK12902 155 -LSVGLIQQDMSPEE--RKKNYACDITYATNSELGFDYLRDNMATDISEVVQRPFNYCVIDEVDSIL 218 (939)
T ss_pred -CeEEEECCCCChHH--HHHhcCCCeEEecCCcccccchhhhhcccccccccCccceEEEeccccee
Confidence 77887766554332 22334689999999887 444432 233346789999999999865
|
|
| >PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane | Back alignment and domain information |
|---|
Probab=98.49 E-value=1.9e-06 Score=89.22 Aligned_cols=128 Identities=20% Similarity=0.216 Sum_probs=93.7
Q ss_pred cCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHHhhhc
Q psy15524 5 QVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSF 84 (930)
Q Consensus 5 ~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~ 84 (930)
.|++.|.-++-.+..|+ |+...||-|||++..+|+.-.... |..|=|++..--||..=++.+..+...+
T Consensus 77 ~p~~vQll~~l~L~~G~--laEm~TGEGKTli~~l~a~~~AL~---------G~~V~vvT~NdyLA~RD~~~~~~~y~~L 145 (266)
T PF07517_consen 77 RPYDVQLLGALALHKGR--LAEMKTGEGKTLIAALPAALNALQ---------GKGVHVVTSNDYLAKRDAEEMRPFYEFL 145 (266)
T ss_dssp ---HHHHHHHHHHHTTS--EEEESTTSHHHHHHHHHHHHHHTT---------SS-EEEEESSHHHHHHHHHHHHHHHHHT
T ss_pred cccHHHHhhhhhcccce--eEEecCCCCcHHHHHHHHHHHHHh---------cCCcEEEeccHHHhhccHHHHHHHHHHh
Confidence 58899999887777765 999999999999998888666543 5568899999999999999999999888
Q ss_pred CCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHH-HHhcC----CCc-cCCCccEEEEccccccc
Q psy15524 85 TWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLD-HCKHT----ETL-KFSKVEHLVLDEADRIL 146 (930)
Q Consensus 85 ~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~-~l~~~----~~~-~l~~l~~vViDE~h~~~ 146 (930)
+ +.++...++.......... .+||+++|...+.- .++.. ... ..+.+.++||||+|.++
T Consensus 146 G-lsv~~~~~~~~~~~r~~~Y--~~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvDs~L 210 (266)
T PF07517_consen 146 G-LSVGIITSDMSSEERREAY--AADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVDSIL 210 (266)
T ss_dssp T---EEEEETTTEHHHHHHHH--HSSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHHHHT
T ss_pred h-hccccCccccCHHHHHHHH--hCcccccccchhhHHHHHHHHhhccchhccCCCCEEEEeccceEE
Confidence 7 7888887776644333322 36899999988753 33321 111 15789999999999765
|
SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A .... |
| >KOG0921|consensus | Back alignment and domain information |
|---|
Probab=98.45 E-value=7.7e-07 Score=101.35 Aligned_cols=321 Identities=18% Similarity=0.209 Sum_probs=185.2
Q ss_pred HhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHHHHhh-ccCCCcceEEEe
Q psy15524 424 QPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLC-KSFTWIVPSWLT 502 (930)
Q Consensus 424 ~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~-~~~~~~~~~~~~ 502 (930)
..+..+.-+++...||+|||.-+.--+|+.+..... .....+.+--|+|--+.-+++.+..-- ...+.++
T Consensus 388 q~v~dn~v~~I~getgcgk~tq~aq~iLe~~~~ns~----g~~~na~v~qprrisaisiaerva~er~e~~g~tv----- 458 (1282)
T KOG0921|consen 388 QAVAENRVVIIKGETGCGKSTQVAQFLLESFLENSN----GASFNAVVSQPRRISAISLAERVANERGEEVGETC----- 458 (1282)
T ss_pred HHHhcCceeeEeecccccchhHHHHHHHHHHhhccc----cccccceeccccccchHHHHHHHHHhhHHhhcccc-----
Confidence 333344558899999999999999999998876421 122346777799988888877664322 1111111
Q ss_pred CCCchHHHHHHHhcCCcEEEECchhHHHhhhccCCcccccceEEEEecchhhhhcCcHHHHHHHHHHHhhcCccceEEEE
Q psy15524 503 GGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILL 582 (930)
Q Consensus 503 gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~l~~~g~~~~l~~i~~~l~~~~~~~q~vl~ 582 (930)
|.+.+-+...-+.-..|..||-|-++..+.+ -+..+.++|+||.|...-.+ ..+..+++-+....+..+++++
T Consensus 459 -gy~vRf~Sa~prpyg~i~fctvgvllr~~e~----glrg~sh~i~deiherdv~~--dfll~~lr~m~~ty~dl~v~lm 531 (1282)
T KOG0921|consen 459 -GYNVRFDSATPRPYGSIMFCTVGVLLRMMEN----GLRGISHVIIDEIHERDVDT--DFVLIVLREMISTYRDLRVVLM 531 (1282)
T ss_pred -cccccccccccccccceeeeccchhhhhhhh----cccccccccchhhhhhccch--HHHHHHHHhhhccchhhhhhhh
Confidence 1111111111122346999999999887765 35678899999999654322 2233344444444456677777
Q ss_pred ccccCHHHHHHHhhhcCCCEEEEcc----------------------CCC-------Ccc-------------cCcccee
Q psy15524 583 SATLTPAVQRLAGMTLQNPIQIDAA----------------------DST-------DIH-------------NTTDSLV 620 (930)
Q Consensus 583 SAT~~~~~~~l~~~~~~~~~~i~~~----------------------~~~-------~~~-------------~~~~~~~ 620 (930)
|||+.-+ +...++.+-..+.+. ... ..+ .......
T Consensus 532 satIdTd---~f~~~f~~~p~~~~~grt~pvq~F~led~~~~~~~vp~~~~~~k~k~~~~~~~~~~ddK~~n~n~~~dd~ 608 (1282)
T KOG0921|consen 532 SATIDTD---LFTNFFSSIPDVTVHGRTFPVQSFFLEDIIQMTQFVPSEPSQKKRKKDDDEEDEEVDDKGRNMNILCDPS 608 (1282)
T ss_pred hcccchh---hhhhhhccccceeeccccccHHHHHHHHhhhhhhccCCCcCccchhhcccccCchhhhcccccccccChh
Confidence 7776432 111111111000000 000 000 0000000
Q ss_pred cCCCceEEEEEcCchhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcC----CCceEEEecCCCCH
Q psy15524 621 IPDSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLG----ENIAFFKLHGSMSQ 696 (930)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~----~~~~~~~lhg~~~~ 696 (930)
.-..................|.+.+...... ..-.+-++||.+.-...-++...+...-. ....++..|+....
T Consensus 609 ~~~~~~~am~~~se~d~~f~l~Eal~~~i~s--~~i~gailvflpgwa~i~~L~~~ll~~~~fg~~~~y~ilp~Hsq~~~ 686 (1282)
T KOG0921|consen 609 YNESTRTAMSRLSEKDIPFGLIEALLNDIAS--RNIDGAVLVFLPGWAEIMTLCNRLLEHQEFGQANKYEILPLHSQLTS 686 (1282)
T ss_pred hcchhhhhhhcchhhcchhHHHHHHHhhhcc--cCCccceeeecCchHHhhhhhhhhhhhhhhccchhcccccchhhccc
Confidence 0000111111111222233333333332221 11256788999888777666555433210 13567788999999
Q ss_pred HHHHHHHHHhhcCCCcEEEeccccccccCCCCccEEEEec------------------CCCChhhHHhhhcccccCCCCc
Q psy15524 697 SERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYT------------------APSSSTDYVHRVGRTARVGHEG 758 (930)
Q Consensus 697 ~~R~~v~~~F~~~~~~vLv~T~~~~~GlDip~v~~VI~~~------------------~p~s~~~y~qr~GRagR~g~~g 758 (930)
.+..++++.-..|..+++++|.++..-+.+-++..||..+ ...+....+||.||+||. ++|
T Consensus 687 ~eqrkvf~~~p~gv~kii~stniaetsiTidd~v~vid~cka~~~~~~s~nn~~~~Atvw~sktn~eqr~gr~grv-R~G 765 (1282)
T KOG0921|consen 687 QEQRKVFEPVPEGVTKIILSTNIAETSITIDDVVYVIDSCKAKEKLFTSHNNMTHYATVWASKTNLEQRKGRAGRV-RPG 765 (1282)
T ss_pred HhhhhccCcccccccccccccceeeEeeeecceeEEEeeeeeeeeeeccccceeeeeeecccccchHhhcccCcee-ccc
Confidence 9999999999999999999999999999888877777544 334667789999999985 467
Q ss_pred eEEEEeCc
Q psy15524 759 SSLLFLIP 766 (930)
Q Consensus 759 ~~~~~~~~ 766 (930)
.|..+++.
T Consensus 766 ~~f~lcs~ 773 (1282)
T KOG0921|consen 766 FCFHLCSR 773 (1282)
T ss_pred ccccccHH
Confidence 77666553
|
|
| >KOG0926|consensus | Back alignment and domain information |
|---|
Probab=98.40 E-value=4.1e-06 Score=94.63 Aligned_cols=118 Identities=25% Similarity=0.243 Sum_probs=73.4
Q ss_pred HHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcC-CCCCCeEEEEEcccHHHHHHHHHHHHHHhhhcCCceeE
Q psy15524 12 LSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKI-SRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPS 90 (930)
Q Consensus 12 ~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~-~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~ 90 (930)
+.+++|.++-=++||+.||||||.- +| +.+....-.+ ...+++-+=|--|.|--|..++++...-...++ ..++
T Consensus 263 ~IMEaIn~n~vvIIcGeTGsGKTTQ--vP--QFLYEAGf~s~~~~~~gmIGITqPRRVAaiamAkRVa~EL~~~~-~eVs 337 (1172)
T KOG0926|consen 263 RIMEAINENPVVIICGETGSGKTTQ--VP--QFLYEAGFASEQSSSPGMIGITQPRRVAAIAMAKRVAFELGVLG-SEVS 337 (1172)
T ss_pred HHHHHhhcCCeEEEecCCCCCcccc--ch--HHHHHcccCCccCCCCCeeeecCchHHHHHHHHHHHHHHhccCc-ccee
Confidence 3444555555699999999999974 44 2222211111 112233455667998888888777655443333 1222
Q ss_pred E--eeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEccccc
Q psy15524 91 W--LTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADR 144 (930)
Q Consensus 91 ~--~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~ 144 (930)
. -+.+. +.....|.++|-+.|+.-+. ..+.+...+.|||||||.
T Consensus 338 YqIRfd~t--------i~e~T~IkFMTDGVLLrEi~--~DflL~kYSvIIlDEAHE 383 (1172)
T KOG0926|consen 338 YQIRFDGT--------IGEDTSIKFMTDGVLLREIE--NDFLLTKYSVIILDEAHE 383 (1172)
T ss_pred EEEEeccc--------cCCCceeEEecchHHHHHHH--HhHhhhhceeEEechhhh
Confidence 1 11111 22346799999999998876 456688999999999994
|
|
| >KOG1015|consensus | Back alignment and domain information |
|---|
Probab=98.40 E-value=6.9e-06 Score=94.13 Aligned_cols=122 Identities=18% Similarity=0.294 Sum_probs=98.1
Q ss_pred hHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcC-------------------CCceEEEecCCCCHH
Q psy15524 637 RLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLG-------------------ENIAFFKLHGSMSQS 697 (930)
Q Consensus 637 ~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~-------------------~~~~~~~lhg~~~~~ 697 (930)
|+..|..+|... .. -+.++|||..+....+.+..+|..... .|..++.+.|..+..
T Consensus 1127 KmiLLleIL~mc-ee----IGDKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDGst~s~ 1201 (1567)
T KOG1015|consen 1127 KMILLLEILRMC-EE----IGDKLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDGSTTSQ 1201 (1567)
T ss_pred ceehHHHHHHHH-HH----hcceeEEeecccchhHHHHHHHHhhcccCccccccccccccccceecCCceEEecCcccHH
Confidence 444555555432 22 267999999999998888777765422 266789999999999
Q ss_pred HHHHHHHHhhcCC----CcEEEeccccccccCCCCccEEEEecCCCChhhHHhhhcccccCCCCceEEEE
Q psy15524 698 ERTEVFKTFRSVK----SGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLF 763 (930)
Q Consensus 698 ~R~~v~~~F~~~~----~~vLv~T~~~~~GlDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~g~~~~~ 763 (930)
.|....+.|.+-. ...||+|.+.+-|+|+-+.+.||.||..+++.--.|-+=|+-|.|+..-++++
T Consensus 1202 ~R~k~~~~FNdp~NlRaRl~LISTRAGsLGiNLvAANRVIIfDasWNPSyDtQSIFRvyRfGQtKPvyiY 1271 (1567)
T KOG1015|consen 1202 SRKKWAEEFNDPTNLRARLFLISTRAGSLGINLVAANRVIIFDASWNPSYDTQSIFRVYRFGQTKPVYIY 1271 (1567)
T ss_pred HHHHHHHHhcCcccceeEEEEEeeccCccccceeecceEEEEecccCCccchHHHHHHHhhcCcCceeeh
Confidence 9999999998542 24799999999999999999999999999999999999999999996655543
|
|
| >PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional | Back alignment and domain information |
|---|
Probab=98.35 E-value=4.1e-06 Score=100.48 Aligned_cols=65 Identities=25% Similarity=0.249 Sum_probs=51.3
Q ss_pred CCccCcHHHHHHHHHhh---cC------CcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHH
Q psy15524 2 NITQVTTVQQLSIQPIL---DG------GDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQ 72 (930)
Q Consensus 2 g~~~l~~~Q~~ai~~~~---~g------~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q 72 (930)
|| +.++-|.+.+..+. ++ +.++|.||||+|||++|++|++..... .+.++||-+.|++|-.|
T Consensus 23 ~~-e~R~~Q~~M~~~V~~al~~~~~~~~~~lviEAgTGtGKTlaYLlPai~~A~~--------~~k~vVIST~T~~LQeQ 93 (697)
T PRK11747 23 GF-IPRAGQRQMIAEVAKTLAGEYLKDGRILVIEAGTGVGKTLSYLLAGIPIARA--------EKKKLVISTATVALQEQ 93 (697)
T ss_pred CC-CcCHHHHHHHHHHHHHHhcccccccceEEEECCCCcchhHHHHHHHHHHHHH--------cCCeEEEEcCCHHHHHH
Confidence 45 47999999666543 33 568999999999999999999876543 24458999999999998
Q ss_pred HHH
Q psy15524 73 TLE 75 (930)
Q Consensus 73 ~~~ 75 (930)
+..
T Consensus 94 L~~ 96 (697)
T PRK11747 94 LVS 96 (697)
T ss_pred HHh
Confidence 863
|
|
| >KOG2340|consensus | Back alignment and domain information |
|---|
Probab=98.30 E-value=6.9e-06 Score=88.88 Aligned_cols=209 Identities=22% Similarity=0.273 Sum_probs=135.6
Q ss_pred ccCcHHHHHHHHHhhcCCcEEEEcCC-CChH--HHHHHHHHHHHHHhhCCc---------C-------------CCCCCe
Q psy15524 4 TQVTTVQQLSIQPILDGGDVLVRSQT-GSGK--TLAYAIPIIQKLQEMRPK---------I-------------SRKDGI 58 (930)
Q Consensus 4 ~~l~~~Q~~ai~~~~~g~~~lv~apT-GsGK--T~~~~l~~l~~l~~~~~~---------~-------------~~~~~~ 58 (930)
..+|+.|.+.+..+.+.+|++..-.| +.|+ +-+|++.+++++.+.+.. + +.-..+
T Consensus 215 ~pltalQ~~L~~~m~~YrDl~y~~~s~kn~~e~R~lYclH~lNHi~K~r~~IL~Nn~r~~Sqk~g~~~~~~frDQG~tRp 294 (698)
T KOG2340|consen 215 EPLTALQKELFKIMFNYRDLLYPTRSQKNGEEYRSLYCLHALNHILKTRDLILGNNRRLASQKEGENPDESFRDQGFTRP 294 (698)
T ss_pred CcchHHHHHHHHHHHhhhhhccccccccccchhhhhHHHHHHHHHHHHHHHHhcchHhhhhhhcCCCCchhhhhcCCCCc
Confidence 35899999999999999998754333 2344 667999999998764321 0 111247
Q ss_pred EEEEEcccHHHHHHHHHHHHHHhhhcCCce---------eEEeeCCC--------chHHHHH------------------
Q psy15524 59 YAVIILPTRELALQTLEIFTKLCKSFTWIV---------PSWLTGGE--------KMKSEKA------------------ 103 (930)
Q Consensus 59 ~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~---------~~~~~g~~--------~~~~~~~------------------ 103 (930)
++|||+|+|+-|..+.+.+..+..+...-+ -.-+.|.. .......
T Consensus 295 kVLivvpfRe~A~riVn~lis~l~G~~q~k~~V~Nk~RF~~eys~~te~~~~~~~kP~D~~~lf~GNtDD~FriGl~ftk 374 (698)
T KOG2340|consen 295 KVLIVVPFRESAYRIVNLLISLLSGDDQGKSEVWNKKRFEGEYSGPTELPPPRAKKPEDFEELFSGNTDDAFRIGLAFTK 374 (698)
T ss_pred eEEEEecchHHHHHHHHHHHHHhcCccccchhhhhhhhhchhcCCCcccCCCCCCCchhHHHHhcCCCcchhhhhHHHHH
Confidence 899999999999999999988843322100 00111100 0011111
Q ss_pred ---Hhc---CCCcEEEEChHHHHHHHhcCC----Ccc-CCCccEEEEcccccccccCcHHHHHHHHHHHhhcCCCceEEE
Q psy15524 104 ---RIR---KGISILVATPGRLLDHCKHTE----TLK-FSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSIL 172 (930)
Q Consensus 104 ---~l~---~~~~Ilv~Tp~~l~~~l~~~~----~~~-l~~l~~vViDE~h~~~~~~~~~~~~~i~~~l~~~~~~~~~i~ 172 (930)
.+. ...|||||+|=.|.-.+.+.+ .++ ++.+.++|||.+|.|+...++ .+..|++.|...+
T Consensus 375 KtikLys~fy~SDIlVaSPLGLRmil~n~gdkkrd~dfLSSIEl~iIDQa~~~l~QNwE-hl~~ifdHLn~~P------- 446 (698)
T KOG2340|consen 375 KTIKLYSKFYKSDILVASPLGLRMILGNTGDKKRDFDFLSSIELLIIDQADIMLMQNWE-HLLHIFDHLNLQP------- 446 (698)
T ss_pred HHHHHHhhhcccCeEEecchhhhhhhcCCCcccccchhhhhhhhhhhhhHHHHHHhhHH-HHHHHHHHhhcCc-------
Confidence 111 236899999988866665322 222 688999999999999865543 3455566664433
Q ss_pred EEeecCCCccccccccccccccccchhhhhhhhhhhccchhhHHHHHHHHhhcCcCceEEEEecccchHHHHhhhccccC
Q psy15524 173 LSATLTPATCWCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLTPAVQRLAGMTLQN 252 (930)
Q Consensus 173 lSAT~~~~~~~~~~~~~~~~~~~~~~~~de~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~sat~~~~~~~l~~~~l~~ 252 (930)
......++++|+.+.+++..+.. +|+++||+-..+....+...+++|
T Consensus 447 ------------~k~h~~DfSRVR~wyL~~qsr~~---------------------rQtl~Fs~y~~~~~nS~fn~~c~N 493 (698)
T KOG2340|consen 447 ------------SKQHDVDFSRVRMWYLDGQSRYF---------------------RQTLLFSRYSHPLFNSLFNQYCQN 493 (698)
T ss_pred ------------ccccCCChhheehheeccHHHHH---------------------HHHHHHHhhccHHHHHHHHHhhhh
Confidence 12245678888888888766543 399999988888777777777665
Q ss_pred C
Q psy15524 253 P 253 (930)
Q Consensus 253 ~ 253 (930)
.
T Consensus 494 ~ 494 (698)
T KOG2340|consen 494 M 494 (698)
T ss_pred h
Confidence 4
|
|
| >PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional | Back alignment and domain information |
|---|
Probab=98.27 E-value=9.1e-06 Score=97.10 Aligned_cols=144 Identities=19% Similarity=0.250 Sum_probs=84.0
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHH-----HHhhh-cCC--ceeEEee
Q psy15524 22 DVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFT-----KLCKS-FTW--IVPSWLT 93 (930)
Q Consensus 22 ~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~-----~~~~~-~~~--~~~~~~~ 93 (930)
++.+.++||+|||.+|+-.++..... .+-.+.||+||+.+.-..+.+-++ ..+.. ++. +....+.
T Consensus 61 n~~~~M~TGtGKT~~~~~~i~~l~~~-------~~~~~fii~vp~~aI~egv~~~l~s~~~k~hF~~~y~~~~~~~~~~~ 133 (986)
T PRK15483 61 NIDIKMETGTGKTYVYTRLMYELHQK-------YGLFKFIIVVPTPAIKEGTRNFIQSDYAKQHFSQFYENTRIELYVIN 133 (986)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHH-------cCCcEEEEEeCCHHHHHHHHHHhhHHHHHHHHHHHcCCceeEEEEEe
Confidence 68999999999999999988776544 223569999999998777665544 22221 221 3333343
Q ss_pred CCC-------c-hHHHHHHhcC------CCcEEEEChHHHHHHHh-cC---------CCccC---CCc-cEEEEcccccc
Q psy15524 94 GGE-------K-MKSEKARIRK------GISILVATPGRLLDHCK-HT---------ETLKF---SKV-EHLVLDEADRI 145 (930)
Q Consensus 94 g~~-------~-~~~~~~~l~~------~~~Ilv~Tp~~l~~~l~-~~---------~~~~l---~~l-~~vViDE~h~~ 145 (930)
++. . .......... ...|+|.|-+.+..-.. +. ...++ ... =.||+||.|++
T Consensus 134 S~k~~k~gr~~~~~~i~~Fa~~~~~~~~~I~Ilv~niqa~n~~~~~~~~~D~~l~~g~~~p~~~i~~~~PivIiDEPh~~ 213 (986)
T PRK15483 134 AGDKKKSGRKNFPAQLSNFVKASRQNSNTIHVLLINAGMLNSASMTRDDYDQTLLGGFTSPVDALAATRPVVIIDEPHRF 213 (986)
T ss_pred cCcccccccccChHHHHHHHhccccCCCceEEEEEehHHhcccccccchhhhhhccCCCChHHHHHhCCCEEEEECCCCC
Confidence 332 1 1111111111 47899999998865321 00 00111 111 36899999999
Q ss_pred cccCcHHHHHHHHHHHhhcCCCceEEEEEeecCC
Q psy15524 146 LDQGYERDIAEFLEILKKQKPQFQSILLSATLTP 179 (930)
Q Consensus 146 ~~~~~~~~~~~i~~~l~~~~~~~~~i~lSAT~~~ 179 (930)
-..+- .... +...+|.. ++.+|||.+.
T Consensus 214 ~~~~k--~~~~----i~~lnpl~-~lrysAT~~~ 240 (986)
T PRK15483 214 PRDNK--FYQA----IEALKPQM-IIRFGATFPD 240 (986)
T ss_pred CcchH--HHHH----HHhcCccc-EEEEeeecCC
Confidence 54321 2222 23333332 5779999976
|
|
| >PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional | Back alignment and domain information |
|---|
Probab=98.26 E-value=1.2e-05 Score=96.15 Aligned_cols=68 Identities=24% Similarity=0.266 Sum_probs=54.5
Q ss_pred CCcEEEeccccccccCCCCccEEEEecCCCChhhHHhhhcccccCCC--Cc-----e--EE-EEeCcccHHHHHHHHh
Q psy15524 710 KSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGH--EG-----S--SL-LFLIPSEVKLVEELQN 777 (930)
Q Consensus 710 ~~~vLv~T~~~~~GlDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~--~g-----~--~~-~~~~~~e~~~~~~l~~ 777 (930)
..+.+++-+++.+|.|-|+|-.++-.....|...-.|.+||.-|.-- .| . -+ ++...++..|++.|+.
T Consensus 501 ~~~fifs~~al~egwd~~~~~~~~~l~~~~s~~~~~q~~gr~lr~~vnq~G~R~~~~~~~LTvianesy~dFa~~LQ~ 578 (986)
T PRK15483 501 TRRFLFSKWTLREGWDNPNVFQIAKLRSSGSETSKLQEVGRGLRLPVDENGHRVSQEEFRLNYLIDYDEKDFASKLVG 578 (986)
T ss_pred CeEEEEEhHHhhhcCCCCCeEEEEEeccCCchHHHHHHhccceeccccccCccccCccEEEEEEeCccHHHHHHHHHH
Confidence 57899999999999999999999999988999999999999998621 12 1 22 3344567789988875
|
|
| >KOG4150|consensus | Back alignment and domain information |
|---|
Probab=98.17 E-value=4.4e-06 Score=90.59 Aligned_cols=137 Identities=7% Similarity=-0.122 Sum_probs=98.0
Q ss_pred ccCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHHhhh
Q psy15524 4 TQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKS 83 (930)
Q Consensus 4 ~~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~ 83 (930)
+....+|.+++..+..|+++++...|.+||++||.+.....+.. .+....+++.|++++++++.+.+.-....
T Consensus 285 E~~~~~~~~~~~~~~~G~~~~~~~~~~~GK~~~~~~~s~~~~~~-------~~~s~~~~~~~~~~~~~~~~~~~~V~~~~ 357 (1034)
T KOG4150|consen 285 ESGIAISLELLKFASEGRADGGNEARQAGKGTCPTSGSRKFQTL-------CHATNSLLPSEMVEHLRNGSKGQVVHVEV 357 (1034)
T ss_pred cchhhhhHHHHhhhhhcccccccchhhcCCccCcccchhhhhhc-------CcccceecchhHHHHhhccCCceEEEEEe
Confidence 45678999999999999999999999999999999988776654 22344799999999999877654333322
Q ss_pred cCCce--eEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcCC---CccCCCccEEEEcccccccc
Q psy15524 84 FTWIV--PSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTE---TLKFSKVEHLVLDEADRILD 147 (930)
Q Consensus 84 ~~~~~--~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~---~~~l~~l~~vViDE~h~~~~ 147 (930)
.+..+ +.-.+.+..........+.+.+++++.|..+.....-.. ...+-++.++++||+|.+..
T Consensus 358 I~~~K~A~V~~~D~~sE~~~~A~~R~~~~~~~s~~~~~~s~~L~~~~~~~~~~~~~~~~~~~~~~~Y~~ 426 (1034)
T KOG4150|consen 358 IKARKSAYVEMSDKLSETTKSALKRIGLNTLYSHQAEAISAALAKSLCYNVPVFEELCKDTNSCALYLF 426 (1034)
T ss_pred hhhhhcceeecccCCCchhHHHHHhcCcceeecCHHHHHHHHhhhccccccHHHHHHHhcccceeeeec
Confidence 22221 122344445555666677889999999998876543211 12245678899999998764
|
|
| >PRK12903 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=98.15 E-value=9.1e-05 Score=86.80 Aligned_cols=128 Identities=18% Similarity=0.150 Sum_probs=89.3
Q ss_pred cCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHHhhhc
Q psy15524 5 QVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSF 84 (930)
Q Consensus 5 ~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~ 84 (930)
.|++.|.-.--.+..| -+..+.||-|||+++.+|++-..+. |..|=|+...--||..=++.+..+...+
T Consensus 78 r~ydVQliGglvLh~G--~IAEMkTGEGKTLvAtLpayLnAL~---------GkgVhVVTvNdYLA~RDae~mg~vy~fL 146 (925)
T PRK12903 78 RPYDVQIIGGIILDLG--SVAEMKTGEGKTITSIAPVYLNALT---------GKGVIVSTVNEYLAERDAEEMGKVFNFL 146 (925)
T ss_pred CcCchHHHHHHHHhcC--CeeeecCCCCccHHHHHHHHHHHhc---------CCceEEEecchhhhhhhHHHHHHHHHHh
Confidence 4677777666555555 4899999999999999998654433 4447777888889888888888887777
Q ss_pred CCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHH-HHHhcC-----CCccCCCccEEEEccccccc
Q psy15524 85 TWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLL-DHCKHT-----ETLKFSKVEHLVLDEADRIL 146 (930)
Q Consensus 85 ~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~-~~l~~~-----~~~~l~~l~~vViDE~h~~~ 146 (930)
+ +.+++...+........ .-.|||++||...+- +.|+.. .....+.+.+.||||+|.++
T Consensus 147 G-LsvG~i~~~~~~~~rr~--aY~~DItYgTn~E~gFDYLRDnm~~~~~~~vqR~~~faIVDEVDSIL 211 (925)
T PRK12903 147 G-LSVGINKANMDPNLKRE--AYACDITYSVHSELGFDYLRDNMVSSKEEKVQRGLNFCLIDEVDSIL 211 (925)
T ss_pred C-CceeeeCCCCChHHHHH--hccCCCeeecCcccchhhhhhcccccHHHhcCcccceeeeccchhee
Confidence 7 67776665544333222 235899999987753 334321 11225778999999999865
|
|
| >KOG0385|consensus | Back alignment and domain information |
|---|
Probab=98.11 E-value=2.9e-05 Score=87.83 Aligned_cols=156 Identities=19% Similarity=0.249 Sum_probs=103.6
Q ss_pred cCcHHHHHHHHHhh----cCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHH
Q psy15524 5 QVTTVQQLSIQPIL----DGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKL 80 (930)
Q Consensus 5 ~l~~~Q~~ai~~~~----~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~ 80 (930)
.|+++|.+-+..+. +|-|.|+.-.-|-|||+- .++.+..+...+. .+|+ -||++|.--|.+ ++++++++
T Consensus 167 ~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQ-tIs~l~yl~~~~~----~~GP-fLVi~P~StL~N-W~~Ef~rf 239 (971)
T KOG0385|consen 167 ELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQ-TISLLGYLKGRKG----IPGP-FLVIAPKSTLDN-WMNEFKRF 239 (971)
T ss_pred ccchhhhccHHHHHHHHhcCcccEeehhcccchHHH-HHHHHHHHHHhcC----CCCC-eEEEeeHhhHHH-HHHHHHHh
Confidence 68999999887754 688999999999999986 3444444433111 1233 799999877754 66677777
Q ss_pred hhhcCCceeEEeeCCCchHHHH-H-H-hcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCcHHHHHHH
Q psy15524 81 CKSFTWIVPSWLTGGEKMKSEK-A-R-IRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEF 157 (930)
Q Consensus 81 ~~~~~~~~~~~~~g~~~~~~~~-~-~-l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~~~~~~~i 157 (930)
+ +.+.+.+++|........ + . .....||+|+|.|..+.-- ..+.--..+++||||||++-... ..+..+
T Consensus 240 ~---P~l~~~~~~Gdk~eR~~~~r~~~~~~~fdV~iTsYEi~i~dk---~~lk~~~W~ylvIDEaHRiKN~~--s~L~~~ 311 (971)
T KOG0385|consen 240 T---PSLNVVVYHGDKEERAALRRDIMLPGRFDVCITSYEIAIKDK---SFLKKFNWRYLVIDEAHRIKNEK--SKLSKI 311 (971)
T ss_pred C---CCcceEEEeCCHHHHHHHHHHhhccCCCceEeehHHHHHhhH---HHHhcCCceEEEechhhhhcchh--hHHHHH
Confidence 5 557788888876432221 1 1 2346899999999986531 22223457899999999985432 223344
Q ss_pred HHHHhhcCCCceEEEEEeecCC
Q psy15524 158 LEILKKQKPQFQSILLSATLTP 179 (930)
Q Consensus 158 ~~~l~~~~~~~~~i~lSAT~~~ 179 (930)
++.+.. ...+++|.||-.
T Consensus 312 lr~f~~----~nrLLlTGTPLQ 329 (971)
T KOG0385|consen 312 LREFKT----DNRLLLTGTPLQ 329 (971)
T ss_pred HHHhcc----cceeEeeCCccc
Confidence 444433 347999999954
|
|
| >COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.09 E-value=1.2e-05 Score=97.14 Aligned_cols=69 Identities=29% Similarity=0.375 Sum_probs=57.3
Q ss_pred ccCcHHHHHHHHHhh----cCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHH
Q psy15524 4 TQVTTVQQLSIQPIL----DGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTK 79 (930)
Q Consensus 4 ~~l~~~Q~~ai~~~~----~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~ 79 (930)
..+++.|.+.+..+. .|+.+++.||||+|||++|++|++...... +.++++.++|+.|..|..++...
T Consensus 14 ~~~r~~Q~~~~~~v~~a~~~~~~~~iEapTGtGKTl~yL~~al~~~~~~--------~~~viist~t~~lq~q~~~~~~~ 85 (654)
T COG1199 14 FEPRPEQREMAEAVAEALKGGEGLLIEAPTGTGKTLAYLLPALAYAREE--------GKKVIISTRTKALQEQLLEEDLP 85 (654)
T ss_pred CCCCHHHHHHHHHHHHHHcCCCcEEEECCCCccHHHHHHHHHHHHHHHc--------CCcEEEECCCHHHHHHHHHhhcc
Confidence 469999999996643 455699999999999999999999887542 34599999999999999988766
Q ss_pred H
Q psy15524 80 L 80 (930)
Q Consensus 80 ~ 80 (930)
+
T Consensus 86 ~ 86 (654)
T COG1199 86 I 86 (654)
T ss_pred h
Confidence 4
|
|
| >CHL00122 secA preprotein translocase subunit SecA; Validated | Back alignment and domain information |
|---|
Probab=98.08 E-value=9e-06 Score=95.54 Aligned_cols=130 Identities=20% Similarity=0.208 Sum_probs=93.5
Q ss_pred CcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHHhhhcC
Q psy15524 6 VTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFT 85 (930)
Q Consensus 6 l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~ 85 (930)
|++.|--..-.+ .+.-+..+.||.|||+++.+|++-.... |..|-|++++..||.+-++.+..+...++
T Consensus 77 ~ydvQlig~l~L--~~G~IaEm~TGEGKTL~a~l~ayl~aL~---------G~~VhVvT~NdyLA~RD~e~m~pvy~~LG 145 (870)
T CHL00122 77 HFDVQLIGGLVL--NDGKIAEMKTGEGKTLVATLPAYLNALT---------GKGVHIVTVNDYLAKRDQEWMGQIYRFLG 145 (870)
T ss_pred CCchHhhhhHhh--cCCccccccCCCCchHHHHHHHHHHHhc---------CCceEEEeCCHHHHHHHHHHHHHHHHHcC
Confidence 677776654333 4568999999999999999998644332 45599999999999999999999988888
Q ss_pred CceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHH-HHHhcC-----CCccCCCccEEEEccccccc-ccC
Q psy15524 86 WIVPSWLTGGEKMKSEKARIRKGISILVATPGRLL-DHCKHT-----ETLKFSKVEHLVLDEADRIL-DQG 149 (930)
Q Consensus 86 ~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~-~~l~~~-----~~~~l~~l~~vViDE~h~~~-~~~ 149 (930)
+.+++..++.+...... .-.+||+++|...+- +.++.. .....+.+.+.||||+|.++ |..
T Consensus 146 -Lsvg~i~~~~~~~err~--aY~~DItYgTn~e~gFDyLRDnm~~~~~~~v~r~~~faIVDEvDSiLIDeA 213 (870)
T CHL00122 146 -LTVGLIQEGMSSEERKK--NYLKDITYVTNSELGFDYLRDNMALSLSDVVQRPFNYCIIDEVDSILIDEA 213 (870)
T ss_pred -CceeeeCCCCChHHHHH--hcCCCCEecCCccccccchhhccCcChHHhhccccceeeeecchhheeccC
Confidence 77887766655543332 234799999986542 233221 11225778999999999865 443
|
|
| >TIGR00604 rad3 DNA repair helicase (rad3) | Back alignment and domain information |
|---|
Probab=98.05 E-value=1.8e-05 Score=95.90 Aligned_cols=73 Identities=19% Similarity=0.202 Sum_probs=59.2
Q ss_pred CCccCcHHHHHHHHHh----hcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHH
Q psy15524 2 NITQVTTVQQLSIQPI----LDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIF 77 (930)
Q Consensus 2 g~~~l~~~Q~~ai~~~----~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~ 77 (930)
=|+.++|.|.+.+..+ ..|.++++.+|||+|||++.+.|++....... ...+++|.+.|..=..|..+++
T Consensus 7 Py~~~y~~Q~~~m~~v~~~l~~~~~~llEsPTGtGKTlslL~~aL~~~~~~~------~~~kIiy~sRThsQl~q~i~El 80 (705)
T TIGR00604 7 PYEKIYPEQRSYMRDLKRSLDRGDEAILEMPSGTGKTISLLSLILAYQQEKP------EVRKIIYASRTHSQLEQATEEL 80 (705)
T ss_pred CCCCCCHHHHHHHHHHHHHhccCCceEEeCCCCCCccHHHHHHHHHHHHhcc------ccccEEEEcccchHHHHHHHHH
Confidence 3666799999988764 46889999999999999999999998875421 2356888889988888888888
Q ss_pred HHH
Q psy15524 78 TKL 80 (930)
Q Consensus 78 ~~~ 80 (930)
++.
T Consensus 81 k~~ 83 (705)
T TIGR00604 81 RKL 83 (705)
T ss_pred Hhh
Confidence 874
|
All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A | Back alignment and domain information |
|---|
Probab=98.05 E-value=3e-05 Score=80.86 Aligned_cols=74 Identities=24% Similarity=0.333 Sum_probs=51.8
Q ss_pred CCCHHHHHhHHhhhcCCc-EEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHHHH
Q psy15524 414 QVTTVQQLSIQPILDGGD-VLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTK 488 (930)
Q Consensus 414 ~~~~iQ~~~i~~il~~~d-~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~ 488 (930)
++++-|.+|+..++...+ .+|.||.|+|||.+ +..++..+...........+.++|+++||..-+.++.+.+.+
T Consensus 1 ~ln~~Q~~Ai~~~~~~~~~~~i~GpPGTGKT~~-l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 1 KLNESQREAIQSALSSNGITLIQGPPGTGKTTT-LASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp ---HHHHHHHHHHCTSSE-EEEE-STTSSHHHH-HHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHcCCCCEEEECCCCCChHHH-HHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 367889999999999998 99999999999965 344444442100001124578899999999999999998887
|
|
| >PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A | Back alignment and domain information |
|---|
Probab=98.01 E-value=1.6e-05 Score=82.88 Aligned_cols=74 Identities=26% Similarity=0.343 Sum_probs=51.0
Q ss_pred cCcHHHHHHHHHhhcCCc-EEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHH
Q psy15524 5 QVTTVQQLSIQPILDGGD-VLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTK 79 (930)
Q Consensus 5 ~l~~~Q~~ai~~~~~g~~-~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~ 79 (930)
.|++.|.+|+..++.... .+|.||.|+|||..... ++..+...........+.++|+++|+..-+.++.+++.+
T Consensus 1 ~ln~~Q~~Ai~~~~~~~~~~~i~GpPGTGKT~~l~~-~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 1 KLNESQREAIQSALSSNGITLIQGPPGTGKTTTLAS-IIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp ---HHHHHHHHHHCTSSE-EEEE-STTSSHHHHHHH-HHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHcCCCCEEEECCCCCChHHHHHH-HHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 378999999999999888 99999999999965433 333331100000123466799999999999999999888
|
|
| >PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [] | Back alignment and domain information |
|---|
Probab=98.01 E-value=9.3e-06 Score=80.69 Aligned_cols=60 Identities=22% Similarity=0.320 Sum_probs=41.7
Q ss_pred CCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHH
Q psy15524 412 ITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTREL 478 (930)
Q Consensus 412 ~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreL 478 (930)
+...|+-|..++.+++...-+++.+|.|||||+.++..+++.+.. +.-.+++|+-|+.+.
T Consensus 2 I~p~~~~Q~~~~~al~~~~~v~~~G~AGTGKT~LA~a~Al~~v~~-------g~~~kiii~Rp~v~~ 61 (205)
T PF02562_consen 2 IKPKNEEQKFALDALLNNDLVIVNGPAGTGKTFLALAAALELVKE-------GEYDKIIITRPPVEA 61 (205)
T ss_dssp ----SHHHHHHHHHHHH-SEEEEE--TTSSTTHHHHHHHHHHHHT-------TS-SEEEEEE-S--T
T ss_pred ccCCCHHHHHHHHHHHhCCeEEEECCCCCcHHHHHHHHHHHHHHh-------CCCcEEEEEecCCCC
Confidence 345788999999999976779999999999999999999988875 234567888888654
|
; GO: 0005524 ATP binding; PDB: 3B85_A. |
| >PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ] | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.00018 Score=79.58 Aligned_cols=230 Identities=22% Similarity=0.211 Sum_probs=133.8
Q ss_pred CCeEEEEEcccHHHHHHHHHHHHHHhhhcCCcee----EEeeC---------------CCchHHHHHHhc----------
Q psy15524 56 DGIYAVIILPTRELALQTLEIFTKLCKSFTWIVP----SWLTG---------------GEKMKSEKARIR---------- 106 (930)
Q Consensus 56 ~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~----~~~~g---------------~~~~~~~~~~l~---------- 106 (930)
..+++|||+|+|.-|.++++.+.++......+.. .--.| +.....+.....
T Consensus 36 tRPkVLIL~P~R~~A~~~V~~Li~l~~~~~~~~nk~RF~~efg~~~~~~~~~~~~~~~~~kP~D~~~~F~GN~DD~FrlG 115 (442)
T PF06862_consen 36 TRPKVLILLPFRNSALRIVETLISLLPPGKQVENKKRFEEEFGLPEDEDDDEEPPEFKKSKPEDFKALFSGNNDDCFRLG 115 (442)
T ss_pred CCceEEEEcccHHHHHHHHHHHHHHcCccchHHHHHHHHHHcCCCccccchhhhccccCCCchhHHHhcCCCccceEEEe
Confidence 3588999999999999999998887643110000 00001 111112222111
Q ss_pred --------------CCCcEEEEChHHHHHHHhcC----CCc-cCCCccEEEEcccccccccCcHHHHHHHHHHHhhcCCC
Q psy15524 107 --------------KGISILVATPGRLLDHCKHT----ETL-KFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQ 167 (930)
Q Consensus 107 --------------~~~~Ilv~Tp~~l~~~l~~~----~~~-~l~~l~~vViDE~h~~~~~~~~~~~~~i~~~l~~~~~~ 167 (930)
...|||||+|=.|...+... ... -|+.+.++|||.||.|+...+. .+..+++.+...+
T Consensus 116 ik~trk~ikLys~Fy~SDIIiASPLGLr~~i~~~~~~~~d~DFLSSIEv~iiD~ad~l~MQNW~-Hv~~v~~~lN~~P-- 192 (442)
T PF06862_consen 116 IKFTRKSIKLYSDFYSSDIIIASPLGLRMIIGEEGEKKRDYDFLSSIEVLIIDQADVLLMQNWE-HVLHVFEHLNLQP-- 192 (442)
T ss_pred EEEecCeeeeecccccCCEEEEChHHHHHHhccccccccccchhheeeeEeechhhHHHHhhHH-HHHHHHHHhccCC--
Confidence 13579999998887766531 222 2799999999999988754432 2445555553332
Q ss_pred ceEEEEEeecCCCccccccccccccccccchhhhhhhhhhhccchhhHHHHHHHHhhcCcCceEEEEecccchHHHHhhh
Q psy15524 168 FQSILLSATLTPATCWCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLTPAVQRLAG 247 (930)
Q Consensus 168 ~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~de~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~sat~~~~~~~l~~ 247 (930)
......+++.++.+.+|...+ ..+|+++||+..++.+..+..
T Consensus 193 -----------------~~~~~~DfsRVR~w~Ldg~a~---------------------~~RQtii~S~~~~pe~~slf~ 234 (442)
T PF06862_consen 193 -----------------KKSHDTDFSRVRPWYLDGQAK---------------------YYRQTIIFSSFQTPEINSLFN 234 (442)
T ss_pred -----------------CCCCCCCHHHHHHHHHcCcch---------------------heeEeEEecCCCCHHHHHHHH
Confidence 122346677777666654432 345999999999999999998
Q ss_pred ccccCC-eeeccCCcccccCCCcccccCCCceeEEEEcCc-------chhHHHHHHHHhhhccccccCCcceEEEEEecc
Q psy15524 248 MTLQNP-IQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPP-------KLRLVALASFILGKCQNVNEDEESKMLVFMATQ 319 (930)
Q Consensus 248 ~~l~~~-~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-------~~k~~~l~~~l~~~~~~~~~~~~~~~iVF~~s~ 319 (930)
..+.|. ..+.........+.. ......+.|.+...+. +.+......-+..... .....+.+|||++|-
T Consensus 235 ~~~~N~~G~v~~~~~~~~~g~i--~~v~~~v~Q~F~r~~~~s~~~~~d~Rf~yF~~~iLP~l~--~~~~~~~~LIfIPSY 310 (442)
T PF06862_consen 235 RHCQNYAGKVRLKPPYEASGVI--SQVVVQVRQVFQRFDCSSPADDPDARFKYFTKKILPQLK--RDSKMSGTLIFIPSY 310 (442)
T ss_pred hhCcCccceEEEeeccccceee--eccccCCceEEEEecCCCcchhhhHHHHHHHHHHHHHhh--hccCCCcEEEEecch
Confidence 877664 233322222110111 1234557777775431 2344444432221111 144568999999997
Q ss_pred cchhhhHHHHh
Q psy15524 320 DMADYHTELLS 330 (930)
Q Consensus 320 ~~~~~l~~~L~ 330 (930)
=+=-.+-.+|+
T Consensus 311 fDfVRlRN~lk 321 (442)
T PF06862_consen 311 FDFVRLRNYLK 321 (442)
T ss_pred hhhHHHHHHHH
Confidence 66666666665
|
; GO: 0005634 nucleus |
| >PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A | Back alignment and domain information |
|---|
Probab=97.97 E-value=4.6e-05 Score=76.54 Aligned_cols=63 Identities=24% Similarity=0.368 Sum_probs=46.3
Q ss_pred CCCHHHHHhHHhhhcCCc--EEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHH
Q psy15524 414 QVTTVQQLSIQPILDGGD--VLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEI 485 (930)
Q Consensus 414 ~~~~iQ~~~i~~il~~~d--~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~ 485 (930)
++++-|.+++..++.+.+ .++.++.|+|||.+ +..+...+.. .|.++++++||...+....+.
T Consensus 1 ~L~~~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~-l~~~~~~~~~--------~g~~v~~~apT~~Aa~~L~~~ 65 (196)
T PF13604_consen 1 TLNEEQREAVRAILTSGDRVSVLQGPAGTGKTTL-LKALAEALEA--------AGKRVIGLAPTNKAAKELREK 65 (196)
T ss_dssp -S-HHHHHHHHHHHHCTCSEEEEEESTTSTHHHH-HHHHHHHHHH--------TT--EEEEESSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCeEEEEEECCCCCHHHH-HHHHHHHHHh--------CCCeEEEECCcHHHHHHHHHh
Confidence 468889999999986654 77889999999975 4445555543 367899999999988876655
|
|
| >TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3 | Back alignment and domain information |
|---|
Probab=97.96 E-value=4.3e-05 Score=91.23 Aligned_cols=162 Identities=24% Similarity=0.230 Sum_probs=94.1
Q ss_pred cHHHHHHHHHhhc--------CCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHH
Q psy15524 7 TTVQQLSIQPILD--------GGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFT 78 (930)
Q Consensus 7 ~~~Q~~ai~~~~~--------g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~ 78 (930)
..||-+|+..+.+ |-=++-.|.||+|||++=.-.+ ..+.. ...|.+..|-.-.|.|..|..+.++
T Consensus 410 F~WQdkA~d~a~~~r~~~~~~GfF~vNMASTGcGKT~aNARIm-yaLsd------~~~g~RfsiALGLRTLTLQTGda~r 482 (1110)
T TIGR02562 410 FRWQNKAFNLAQKLRQKSPEQGAFGVNMASTGCGKTLANARAM-YALRD------DKQGARFAIALGLRSLTLQTGHALK 482 (1110)
T ss_pred cchHHHHHHHHHHHHhhcccCCeEEEEecCCCcchHHHHHHHH-HHhCC------CCCCceEEEEccccceeccchHHHH
Confidence 4689999987654 2226777999999999743333 22222 2335566777777777777777776
Q ss_pred HHhhhcCCceeEEeeCCCc-------------------------------------------hHHHHHHhcC--------
Q psy15524 79 KLCKSFTWIVPSWLTGGEK-------------------------------------------MKSEKARIRK-------- 107 (930)
Q Consensus 79 ~~~~~~~~~~~~~~~g~~~-------------------------------------------~~~~~~~l~~-------- 107 (930)
+... ++.-...++.|+.. .......+..
T Consensus 483 ~rL~-L~~ddLAVlIGs~Av~~L~e~~~~~~~~~~~~GSeS~e~l~~e~~~~~~~~~~g~l~~~~l~~~l~~~~k~~rll 561 (1110)
T TIGR02562 483 TRLN-LSDDDLAVLIGGTAVQTLFDLSKEKIEQVDEDGSESAPIFLAEGQDCNLPDWDGPLDTIELLGRLSLDDKEKTLL 561 (1110)
T ss_pred HhcC-CCccceEEEECHHHHHHHHHHHhhhccccccCCCccchhhhcccCcCCeeeccCCccchhhhhhhccChhhhhhh
Confidence 6543 22222222233221 1111111111
Q ss_pred CCcEEEEChHHHHHHHhc--CCCccCC--C--ccEEEEcccccccccCcHHHHHHHHHHHhhcCCCceEEEEEeecCC
Q psy15524 108 GISILVATPGRLLDHCKH--TETLKFS--K--VEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTP 179 (930)
Q Consensus 108 ~~~Ilv~Tp~~l~~~l~~--~~~~~l~--~--l~~vViDE~h~~~~~~~~~~~~~i~~~l~~~~~~~~~i~lSAT~~~ 179 (930)
..+++|||+..++..... .+...+. . =+.|||||+|.+-..-+ ..+.+++..+... ..+++++|||+|+
T Consensus 562 ~apv~V~TIDQlL~a~~~~r~~~~~l~ll~La~svlVlDEVHaYD~~~~-~~L~rlL~w~~~l--G~~VlLmSATLP~ 636 (1110)
T TIGR02562 562 AAPVLVCTIDHLIPATESHRGGHHIAPMLRLMSSDLILDEPDDYEPEDL-PALLRLVQLAGLL--GSRVLLSSATLPP 636 (1110)
T ss_pred cCCeEEecHHHHHHHhhhcccchhHHHHHHhcCCCEEEECCccCCHHHH-HHHHHHHHHHHHc--CCCEEEEeCCCCH
Confidence 146999999999877632 1122112 1 26799999998743322 3355555544443 3589999999986
|
The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc. |
| >COG3587 Restriction endonuclease [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.00044 Score=79.81 Aligned_cols=69 Identities=23% Similarity=0.269 Sum_probs=56.9
Q ss_pred CCCcEEEeccccccccCCCCccEEEEecCCCChhhHHhhhcccccC--CCCce-----------EEEEeCcccHHHHHHH
Q psy15524 709 VKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARV--GHEGS-----------SLLFLIPSEVKLVEEL 775 (930)
Q Consensus 709 ~~~~vLv~T~~~~~GlDip~v~~VI~~~~p~s~~~y~qr~GRagR~--g~~g~-----------~~~~~~~~e~~~~~~l 775 (930)
...+.+++-.++-+|.|=|+|=.++-.....|..+=.|.+||.-|. ...|. -.+++..+|..|++.|
T Consensus 482 ~plRFIFS~waLrEGWDNPNVFtIckL~~S~SeiSK~QeVGRGLRLaVNe~G~RV~~~~~~~n~L~vlv~~sek~Fv~~L 561 (985)
T COG3587 482 EPLRFIFSKWALREGWDNPNVFTICKLRSSGSEISKLQEVGRGLRLAVNENGERVTKDFDFPNELTVLVNESEKDFVKAL 561 (985)
T ss_pred CcceeeeehhHHhhcCCCCCeeEEEEecCCCcchHHHHHhccceeeeeccccceecccccccceEEEEecccHHHHHHHH
Confidence 4578999999999999999999999999999999999999999995 22232 2345556788899998
Q ss_pred Hh
Q psy15524 776 QN 777 (930)
Q Consensus 776 ~~ 777 (930)
+.
T Consensus 562 qk 563 (985)
T COG3587 562 QK 563 (985)
T ss_pred HH
Confidence 75
|
|
| >COG4889 Predicted helicase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.93 E-value=2.8e-05 Score=88.75 Aligned_cols=129 Identities=19% Similarity=0.255 Sum_probs=82.4
Q ss_pred ccCcHHHHHHHHHhhcC-----CcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHH
Q psy15524 4 TQVTTVQQLSIQPILDG-----GDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFT 78 (930)
Q Consensus 4 ~~l~~~Q~~ai~~~~~g-----~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~ 78 (930)
+.|+|+|+.|+.++.+| +.-|+ +..|+|||+..+--+ ..+.. .++|+|+|+++|..|..+.+.
T Consensus 160 kk~R~hQq~Aid~a~~~F~~n~RGkLI-MAcGTGKTfTsLkis-Eala~----------~~iL~LvPSIsLLsQTlrew~ 227 (1518)
T COG4889 160 KKPRPHQQTAIDAAKEGFSDNDRGKLI-MACGTGKTFTSLKIS-EALAA----------ARILFLVPSISLLSQTLREWT 227 (1518)
T ss_pred CCCChhHHHHHHHHHhhcccccCCcEE-EecCCCccchHHHHH-HHHhh----------hheEeecchHHHHHHHHHHHh
Confidence 46999999999998875 22344 445999999865443 33322 459999999999999988776
Q ss_pred HHhhhcCCceeEEeeCCCchHHH-----------------------HH--HhcCCCcEEEEChHHHHHHHhcCCCccCCC
Q psy15524 79 KLCKSFTWIVPSWLTGGEKMKSE-----------------------KA--RIRKGISILVATPGRLLDHCKHTETLKFSK 133 (930)
Q Consensus 79 ~~~~~~~~~~~~~~~g~~~~~~~-----------------------~~--~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~ 133 (930)
.-.. ++ +....++++.....- .. .-..+--|+++|.+.+...-.. ....+..
T Consensus 228 ~~~~-l~-~~a~aVcSD~kvsrs~eDik~sdl~~p~sT~~~~il~~~~~~~k~~~~~vvFsTYQSl~~i~eA-Qe~G~~~ 304 (1518)
T COG4889 228 AQKE-LD-FRASAVCSDDKVSRSAEDIKASDLPIPVSTDLEDILSEMEHRQKANGLTVVFSTYQSLPRIKEA-QEAGLDE 304 (1518)
T ss_pred hccC-cc-ceeEEEecCccccccccccccccCCCCCcccHHHHHHHHHHhhccCCcEEEEEcccchHHHHHH-HHcCCCC
Confidence 5432 22 333333333211100 00 1112345899999887554332 3345788
Q ss_pred ccEEEEcccccccc
Q psy15524 134 VEHLVLDEADRILD 147 (930)
Q Consensus 134 l~~vViDE~h~~~~ 147 (930)
+++||-||||+...
T Consensus 305 fDliicDEAHRTtG 318 (1518)
T COG4889 305 FDLIICDEAHRTTG 318 (1518)
T ss_pred ccEEEecchhcccc
Confidence 99999999998643
|
|
| >TIGR00596 rad1 DNA repair protein (rad1) | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.00022 Score=85.59 Aligned_cols=71 Identities=14% Similarity=0.078 Sum_probs=50.6
Q ss_pred HhcCCcEEEECchhHHHhhhccCCcccccceEEEEecchhhhhcCcHHHHHHHHHHHhhcCccceEEEEccccCH
Q psy15524 514 IRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTP 588 (930)
Q Consensus 514 ~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~l~~~g~~~~l~~i~~~l~~~~~~~q~vl~SAT~~~ 588 (930)
+.....|+++||.-+..-+.. +.+.++.+..+|+||||++.+..-+..+.++. ....+..-+.+|||.+..
T Consensus 4 ly~~ggi~~~T~rIl~~DlL~-~ri~~~~itgiiv~~Ahr~~~~~~eaFI~rly---r~~n~~gfIkafSdsP~~ 74 (814)
T TIGR00596 4 VYLEGGIFSITSRILVVDLLT-GIIPPELITGILVLRADRIIESSQEAFILRLY---RQKNKTGFIKAFSDNPEA 74 (814)
T ss_pred HhhcCCEEEEechhhHhHHhc-CCCCHHHccEEEEeecccccccccHHHHHHHH---HHhCCCcceEEecCCCcc
Confidence 345678999999987544433 56789999999999999997665554444444 333345568899999763
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit |
| >KOG0390|consensus | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.00022 Score=83.34 Aligned_cols=162 Identities=20% Similarity=0.199 Sum_probs=104.6
Q ss_pred ccCcHHHHHHHHHhh---cCC-------cEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHH
Q psy15524 4 TQVTTVQQLSIQPIL---DGG-------DVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQT 73 (930)
Q Consensus 4 ~~l~~~Q~~ai~~~~---~g~-------~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~ 73 (930)
..++|+|++.+.-+. .|. .++++-..|+|||+. +++.++.+.+..+.... --.++|||+|. .|+..+
T Consensus 237 ~~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq-~IsflwtlLrq~P~~~~-~~~k~lVV~P~-sLv~nW 313 (776)
T KOG0390|consen 237 KILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQ-CISFIWTLLRQFPQAKP-LINKPLVVAPS-SLVNNW 313 (776)
T ss_pred hhcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHH-HHHHHHHHHHhCcCccc-cccccEEEccH-HHHHHH
Confidence 368999999998754 232 367777789999996 55566666654332110 12568999994 689999
Q ss_pred HHHHHHHhhhcCCceeEEeeCCCch--HHHHHHhcC-----CCcEEEEChHHHHHHHhcCCCccCCCccEEEEccccccc
Q psy15524 74 LEIFTKLCKSFTWIVPSWLTGGEKM--KSEKARIRK-----GISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRIL 146 (930)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~g~~~~--~~~~~~l~~-----~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~ 146 (930)
.++|.+|... ..+....++|.... ......+.- ...|++-+.+.+.+.+.. +....+++||.||.|++-
T Consensus 314 kkEF~KWl~~-~~i~~l~~~~~~~~~w~~~~sil~~~~~~~~~~vli~sye~~~~~~~~---il~~~~glLVcDEGHrlk 389 (776)
T KOG0390|consen 314 KKEFGKWLGN-HRINPLDFYSTKKSSWIKLKSILFLGYKQFTTPVLIISYETASDYCRK---ILLIRPGLLVCDEGHRLK 389 (776)
T ss_pred HHHHHHhccc-cccceeeeecccchhhhhhHHHHHhhhhheeEEEEeccHHHHHHHHHH---HhcCCCCeEEECCCCCcc
Confidence 9999999864 23455556666553 222222211 146888899988766543 446789999999999874
Q ss_pred ccCcHHHHHHHHHHHhhcCCCceEEEEEeecC
Q psy15524 147 DQGYERDIAEFLEILKKQKPQFQSILLSATLT 178 (930)
Q Consensus 147 ~~~~~~~~~~i~~~l~~~~~~~~~i~lSAT~~ 178 (930)
... ..+...+..+ ...+.|+||.||-
T Consensus 390 N~~--s~~~kaL~~l----~t~rRVLLSGTp~ 415 (776)
T KOG0390|consen 390 NSD--SLTLKALSSL----KTPRRVLLTGTPI 415 (776)
T ss_pred chh--hHHHHHHHhc----CCCceEEeeCCcc
Confidence 321 1122222222 2347899999994
|
|
| >KOG0924|consensus | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.00078 Score=75.50 Aligned_cols=117 Identities=21% Similarity=0.186 Sum_probs=68.3
Q ss_pred HHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHHhh-hcCCcee
Q psy15524 11 QLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCK-SFTWIVP 89 (930)
Q Consensus 11 ~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~-~~~~~~~ 89 (930)
.+.+..+.++.-++|++.||||||.- +| +.+.... -.+.+-+-+--|.|.-|..++++..+-.. .++ ..+
T Consensus 362 ~~ll~~ir~n~vvvivgETGSGKTTQ--l~--QyL~edG----Y~~~GmIGcTQPRRvAAiSVAkrVa~EM~~~lG-~~V 432 (1042)
T KOG0924|consen 362 DQLLSVIRENQVVVIVGETGSGKTTQ--LA--QYLYEDG----YADNGMIGCTQPRRVAAISVAKRVAEEMGVTLG-DTV 432 (1042)
T ss_pred HHHHHHHhhCcEEEEEecCCCCchhh--hH--HHHHhcc----cccCCeeeecCchHHHHHHHHHHHHHHhCCccc-ccc
Confidence 33444445566699999999999985 22 3332211 01122344556999988888887665542 222 111
Q ss_pred EEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEccccc
Q psy15524 90 SWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADR 144 (930)
Q Consensus 90 ~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~ 144 (930)
+.-..=++ .......|=+.|-+.|+.-.. ..-.+.+.+.||+||||.
T Consensus 433 GYsIRFEd------vT~~~T~IkymTDGiLLrEsL--~d~~L~kYSviImDEAHE 479 (1042)
T KOG0924|consen 433 GYSIRFED------VTSEDTKIKYMTDGILLRESL--KDRDLDKYSVIIMDEAHE 479 (1042)
T ss_pred ceEEEeee------cCCCceeEEEeccchHHHHHh--hhhhhhheeEEEechhhh
Confidence 11110000 011234588999999887543 333478899999999994
|
|
| >PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00016 Score=84.25 Aligned_cols=136 Identities=21% Similarity=0.227 Sum_probs=83.7
Q ss_pred EEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHHhhhcCCceeEEeeCCCchHHHH
Q psy15524 23 VLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEK 102 (930)
Q Consensus 23 ~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 102 (930)
.+|-||.|||||.+..-++-+.+. .++.++|+++..++|+.+...+++...-. + .......++.
T Consensus 52 ~vVRSpMGTGKTtaLi~wLk~~l~--------~~~~~VLvVShRrSL~~sL~~rf~~~~l~-g-Fv~Y~d~~~~------ 115 (824)
T PF02399_consen 52 LVVRSPMGTGKTTALIRWLKDALK--------NPDKSVLVVSHRRSLTKSLAERFKKAGLS-G-FVNYLDSDDY------ 115 (824)
T ss_pred EEEECCCCCCcHHHHHHHHHHhcc--------CCCCeEEEEEhHHHHHHHHHHHHhhcCCC-c-ceeeeccccc------
Confidence 789999999999876555544332 24567999999999999999999765321 1 2111111110
Q ss_pred HHhc-CCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCcHHHHH---HHHHHHhh-cCCCceEEEEEeec
Q psy15524 103 ARIR-KGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIA---EFLEILKK-QKPQFQSILLSATL 177 (930)
Q Consensus 103 ~~l~-~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~~~~~~---~i~~~l~~-~~~~~~~i~lSAT~ 177 (930)
.+. ...+-+++..+.|.+... -.+.+.++|||||+-..+..-|.+.++ .++..+.. .....++|.+-|++
T Consensus 116 -~i~~~~~~rLivqIdSL~R~~~----~~l~~yDvVIIDEv~svL~qL~S~Tm~~~~~v~~~L~~lI~~ak~VI~~DA~l 190 (824)
T PF02399_consen 116 -IIDGRPYDRLIVQIDSLHRLDG----SLLDRYDVVIIDEVMSVLNQLFSPTMRQREEVDNLLKELIRNAKTVIVMDADL 190 (824)
T ss_pred -cccccccCeEEEEehhhhhccc----ccccccCEEEEehHHHHHHHHhHHHHhhHHHHHHHHHHHHHhCCeEEEecCCC
Confidence 011 134677777777765532 236678999999998776553333222 22222221 11223788888888
Q ss_pred CC
Q psy15524 178 TP 179 (930)
Q Consensus 178 ~~ 179 (930)
+.
T Consensus 191 n~ 192 (824)
T PF02399_consen 191 ND 192 (824)
T ss_pred CH
Confidence 65
|
It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication |
| >KOG0387|consensus | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00061 Score=77.95 Aligned_cols=158 Identities=18% Similarity=0.187 Sum_probs=97.8
Q ss_pred ccCcHHHHHHHHHhhc----CCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHH
Q psy15524 4 TQVTTVQQLSIQPILD----GGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTK 79 (930)
Q Consensus 4 ~~l~~~Q~~ai~~~~~----g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~ 79 (930)
..|.++|++.+..+.+ +..-|+--.-|-|||.- +++.|..+..... -...+|||||. .++.|+.++|..
T Consensus 204 ~~Lf~yQreGV~WL~~L~~q~~GGILgDeMGLGKTIQ-iisFLaaL~~S~k-----~~~paLIVCP~-Tii~qW~~E~~~ 276 (923)
T KOG0387|consen 204 SKLFPYQREGVQWLWELYCQRAGGILGDEMGLGKTIQ-IISFLAALHHSGK-----LTKPALIVCPA-TIIHQWMKEFQT 276 (923)
T ss_pred HHhhHHHHHHHHHHHHHHhccCCCeecccccCccchh-HHHHHHHHhhccc-----ccCceEEEccH-HHHHHHHHHHHH
Confidence 4688999999988653 45678888899999975 2222222222100 11339999996 578899999999
Q ss_pred HhhhcCCceeEEeeCCCch---------HHHHHHh----cCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEccccccc
Q psy15524 80 LCKSFTWIVPSWLTGGEKM---------KSEKARI----RKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRIL 146 (930)
Q Consensus 80 ~~~~~~~~~~~~~~g~~~~---------~~~~~~l----~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~ 146 (930)
++.. ..+..+++.... ......+ ..+..|+|+|.+.+.-. ...+.-...+++|+||.|.+-
T Consensus 277 w~p~---~rv~ilh~t~s~~r~~~~~~~~~~~~~L~r~~~~~~~ilitty~~~r~~---~d~l~~~~W~y~ILDEGH~Ir 350 (923)
T KOG0387|consen 277 WWPP---FRVFILHGTGSGARYDASHSSHKKDKLLIRKVATDGGILITTYDGFRIQ---GDDLLGILWDYVILDEGHRIR 350 (923)
T ss_pred hCcc---eEEEEEecCCcccccccchhhhhhhhhheeeecccCcEEEEehhhhccc---CcccccccccEEEecCccccc
Confidence 8753 566666665542 1111111 12357999998765321 122333457899999999986
Q ss_pred ccCcHHHHHHHHHHHhhcCCCceEEEEEeecCCC
Q psy15524 147 DQGYERDIAEFLEILKKQKPQFQSILLSATLTPA 180 (930)
Q Consensus 147 ~~~~~~~~~~i~~~l~~~~~~~~~i~lSAT~~~~ 180 (930)
...-. +...+..+ ...+.|.||.||-.-
T Consensus 351 Npns~--islackki----~T~~RiILSGTPiQN 378 (923)
T KOG0387|consen 351 NPNSK--ISLACKKI----RTVHRIILSGTPIQN 378 (923)
T ss_pred CCccH--HHHHHHhc----cccceEEeeCccccc
Confidence 54422 22222222 345789999999543
|
|
| >PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00033 Score=70.25 Aligned_cols=153 Identities=17% Similarity=0.231 Sum_probs=96.4
Q ss_pred CCCCCCCCCHHHHHHHHhcCCCCCCCHHHHHhHHhhhc---CCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCe
Q psy15524 391 SYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILD---GGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGI 467 (930)
Q Consensus 391 ~f~~l~~l~~~~~~~l~~~~~~~~~~~iQ~~~i~~il~---~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~ 467 (930)
.|+.. .-|.+++=.+. .++ -.++.|.+....+.+ |+|.+.++-+|.|||-+ ++|++..+.. ++..
T Consensus 4 ~w~p~-~~P~wLl~E~e--~~i-liR~~Q~~ia~~mi~~~~~~n~v~QlnMGeGKTsV-I~Pmla~~LA-------dg~~ 71 (229)
T PF12340_consen 4 NWDPM-EYPDWLLFEIE--SNI-LIRPVQVEIAREMISPPSGKNSVMQLNMGEGKTSV-IVPMLALALA-------DGSR 71 (229)
T ss_pred CCCch-hChHHHHHHHH--cCc-eeeHHHHHHHHHHhCCCCCCCeEeeecccCCccch-HHHHHHHHHc-------CCCc
Confidence 35555 55666665554 233 689999999988886 57899999999999988 8999988875 3345
Q ss_pred eEEEEccCHHHHHHHHHHHHHhhccCCCcce--EEEeCCCchH--------HHHHHHhcCCcEEEECchhHHHhhhcc--
Q psy15524 468 YAVIILPTRELALQTLEIFTKLCKSFTWIVP--SWLTGGEKMK--------SEKARIRKGISILVATPGRLLDHCKHT-- 535 (930)
Q Consensus 468 ~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~--~~~~gg~~~~--------~~~~~~~~~~~Ilv~Tp~rl~~~l~~~-- 535 (930)
-+.+++| ++|..|.++.+...++..-.... .-+....... ...+.......|+++||+.++...-..
T Consensus 72 LvrviVp-k~Ll~q~~~~L~~~lg~l~~r~i~~lpFsR~~~~~~~~~~~~~~l~~~~~~~~gill~~PEhilSf~L~~le 150 (229)
T PF12340_consen 72 LVRVIVP-KALLEQMRQMLRSRLGGLLNRRIYHLPFSRSTPLTPETLEKIRQLLEECMRSGGILLATPEHILSFKLKGLE 150 (229)
T ss_pred EEEEEcC-HHHHHHHHHHHHHHHHHHhCCeeEEecccCCCCCCHHHHHHHHHHHHHHHHcCCEEEeChHHHHHHHHHHHH
Confidence 5677777 58999999998877654221111 1111111111 111123345679999999875532110
Q ss_pred ----CCc-----------ccccceEEEEecchhhhh
Q psy15524 536 ----ETL-----------KFSKVEHLVLDEADRILD 556 (930)
Q Consensus 536 ----~~~-----------~~~~l~~lVlDEah~l~~ 556 (930)
... .+++-..=|+||+|.++.
T Consensus 151 ~l~~~~~~~~~~l~~~q~~l~~~~rdilDEsDe~L~ 186 (229)
T PF12340_consen 151 RLQDGKPEEARELLKIQKWLDEHSRDILDESDEILS 186 (229)
T ss_pred HHHhcCHHHHHHHHHHHHHHHhcCCeEeECchhccC
Confidence 000 123344569999997764
|
There are two conserved sequence motifs: LLE and NMG. |
| >PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A | Back alignment and domain information |
|---|
Probab=97.77 E-value=7.1e-05 Score=73.10 Aligned_cols=106 Identities=19% Similarity=0.331 Sum_probs=73.3
Q ss_pred CceEEEEecchhhHHHHHHHHhhhcC-CCceEEEecCCCCHHHHHHHHHHhhcCCCcEEEecc--ccccccCCCC--ccE
Q psy15524 657 ESKMLVFMATQDMADYHTELLSTVLG-ENIAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTD--VAARGLDLPL--VDW 731 (930)
Q Consensus 657 ~~k~iVF~~s~~~~~~~~~~l~~~~~-~~~~~~~lhg~~~~~~R~~v~~~F~~~~~~vLv~T~--~~~~GlDip~--v~~ 731 (930)
+++++|||+|.+..+.+.+.+..... .++.++. . ...++..+++.|+++...||+|+. .+++|+|+|+ ++.
T Consensus 9 ~g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~v~~-q---~~~~~~~~l~~~~~~~~~il~~v~~g~~~EGiD~~~~~~r~ 84 (167)
T PF13307_consen 9 PGGVLVFFPSYRRLEKVYERLKERLEEKGIPVFV-Q---GSKSRDELLEEFKRGEGAILLAVAGGSFSEGIDFPGDLLRA 84 (167)
T ss_dssp SSEEEEEESSHHHHHHHHTT-TSS-E-ETSCEEE-S---TCCHHHHHHHHHCCSSSEEEEEETTSCCGSSS--ECESEEE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhhcccccceeee-c---CcchHHHHHHHHHhccCeEEEEEecccEEEeecCCCchhhe
Confidence 68999999999999999888876431 1334442 2 345789999999999999999998 9999999996 678
Q ss_pred EEEecCCC----Ch--------------------------hhHHhhhcccccCCCCceEEEEeCc
Q psy15524 732 IVQYTAPS----SS--------------------------TDYVHRVGRTARVGHEGSSLLFLIP 766 (930)
Q Consensus 732 VI~~~~p~----s~--------------------------~~y~qr~GRagR~g~~g~~~~~~~~ 766 (930)
||...+|. ++ ....|-+||+-|...+-.+++++.+
T Consensus 85 vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~Qa~GR~iR~~~D~g~i~llD~ 149 (167)
T PF13307_consen 85 VIIVGLPFPPPSDPLVQAKREYLDKQGKNPFRDWYLPPAIRKLKQAIGRLIRSEDDYGVIILLDS 149 (167)
T ss_dssp EEEES-----TTCHHHHHHHHHHHHCCTTCHHHHTHHHHHHHHHHHHHCC--STT-EEEEEEESG
T ss_pred eeecCCCCCCCCCHHHHHHHHHHHHHhccchhhHhhHHHHHHHhhhcCcceeccCCcEEEEEEcC
Confidence 99888774 11 1235889999998877555555554
|
|
| >KOG0925|consensus | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.0014 Score=70.88 Aligned_cols=147 Identities=17% Similarity=0.184 Sum_probs=74.5
Q ss_pred HHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHHhhhcCCceeEE
Q psy15524 12 LSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSW 91 (930)
Q Consensus 12 ~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~ 91 (930)
+-+..+..++-+++++.||||||.-.=-.++...... ...+..--|.+--+.+++.+...... +..+-
T Consensus 54 ~F~~~l~~nQ~~v~vGetgsGKttQiPq~~~~~~~~~--------~~~v~CTQprrvaamsva~RVadEMD----v~lG~ 121 (699)
T KOG0925|consen 54 EFLKLLLNNQIIVLVGETGSGKTTQIPQFVLEYELSH--------LTGVACTQPRRVAAMSVAQRVADEMD----VTLGE 121 (699)
T ss_pred HHHHHHhcCceEEEEecCCCCccccCcHHHHHHHHhh--------ccceeecCchHHHHHHHHHHHHHHhc----cccch
Confidence 3344455677899999999999975222222222110 12367777988888888877655432 11111
Q ss_pred eeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCcH-HHHHHHHHHHhhcCCCceE
Q psy15524 92 LTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYE-RDIAEFLEILKKQKPQFQS 170 (930)
Q Consensus 92 ~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~~-~~~~~i~~~l~~~~~~~~~ 170 (930)
-.|-. .. +......+.=+-++|-++|++-..+. -.+...+.+|+||||.= ... +.+..++..+...+|+.++
T Consensus 122 EVGys-Ir-fEdC~~~~T~Lky~tDgmLlrEams~--p~l~~y~viiLDeahER---tlATDiLmGllk~v~~~rpdLk~ 194 (699)
T KOG0925|consen 122 EVGYS-IR-FEDCTSPNTLLKYCTDGMLLREAMSD--PLLGRYGVIILDEAHER---TLATDILMGLLKEVVRNRPDLKL 194 (699)
T ss_pred hcccc-cc-ccccCChhHHHHHhcchHHHHHHhhC--cccccccEEEechhhhh---hHHHHHHHHHHHHHHhhCCCceE
Confidence 11110 00 00000000012245666665544322 23678899999999931 111 2233334444344456666
Q ss_pred EEEEeec
Q psy15524 171 ILLSATL 177 (930)
Q Consensus 171 i~lSAT~ 177 (930)
|-+|||+
T Consensus 195 vvmSatl 201 (699)
T KOG0925|consen 195 VVMSATL 201 (699)
T ss_pred EEeeccc
Confidence 6666665
|
|
| >PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00024 Score=71.37 Aligned_cols=63 Identities=22% Similarity=0.328 Sum_probs=45.5
Q ss_pred cCcHHHHHHHHHhhcCC--cEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHH
Q psy15524 5 QVTTVQQLSIQPILDGG--DVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEI 76 (930)
Q Consensus 5 ~l~~~Q~~ai~~~~~g~--~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~ 76 (930)
+|++-|++|+..++... -+++.+|.|+|||.+ +..+...+.. .+.++++++||..-+..+.+.
T Consensus 1 ~L~~~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~-l~~~~~~~~~--------~g~~v~~~apT~~Aa~~L~~~ 65 (196)
T PF13604_consen 1 TLNEEQREAVRAILTSGDRVSVLQGPAGTGKTTL-LKALAEALEA--------AGKRVIGLAPTNKAAKELREK 65 (196)
T ss_dssp -S-HHHHHHHHHHHHCTCSEEEEEESTTSTHHHH-HHHHHHHHHH--------TT--EEEEESSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCeEEEEEECCCCCHHHH-HHHHHHHHHh--------CCCeEEEECCcHHHHHHHHHh
Confidence 58999999999997544 378889999999975 3345455543 246699999999988876655
|
|
| >KOG0391|consensus | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00011 Score=86.34 Aligned_cols=155 Identities=19% Similarity=0.256 Sum_probs=102.5
Q ss_pred CCCHHHHHhHHhhhc----CCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHHHHh
Q psy15524 414 QVTTVQQLSIQPILD----GGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKL 489 (930)
Q Consensus 414 ~~~~iQ~~~i~~il~----~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~ 489 (930)
.++.+|...+..+.. +-|-|+.-..|-|||.. .|.++.++...+..| |+ -|||+||- ....|.-+|+++
T Consensus 615 qLReYQkiGLdWLatLYeknlNGILADEmGLGKTIQ-tISllAhLACeegnW----GP-HLIVVpTs-viLnWEMElKRw 687 (1958)
T KOG0391|consen 615 QLREYQKIGLDWLATLYEKNLNGILADEMGLGKTIQ-TISLLAHLACEEGNW----GP-HLIVVPTS-VILNWEMELKRW 687 (1958)
T ss_pred HHHHHHHhhHHHHHHHHHhcccceehhhhcccchhH-HHHHHHHHHhcccCC----CC-ceEEeech-hhhhhhHHHhhh
Confidence 456778887766543 34689999999999987 667777776654433 33 68999994 455688888888
Q ss_pred hccCCCcceEEEeCCCchHHHHHHHhcC---CcEEEECchhHHHhhhccCCcccccceEEEEecchhhhhcCcHHHHHHH
Q psy15524 490 CKSFTWIVPSWLTGGEKMKSEKARIRKG---ISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEF 566 (930)
Q Consensus 490 ~~~~~~~~~~~~~gg~~~~~~~~~~~~~---~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~l~~~g~~~~l~~i 566 (930)
+-. +.....+|......+++.-+.. .+|.|+++-.+.+-+. .|.-.+++|+||||||++-++.- ..+..+
T Consensus 688 cPg---lKILTYyGs~kErkeKRqgW~kPnaFHVCItSYklv~qd~~---AFkrkrWqyLvLDEaqnIKnfks-qrWQAl 760 (1958)
T KOG0391|consen 688 CPG---LKILTYYGSHKERKEKRQGWAKPNAFHVCITSYKLVFQDLT---AFKRKRWQYLVLDEAQNIKNFKS-QRWQAL 760 (1958)
T ss_pred CCc---ceEeeecCCHHHHHHHhhcccCCCeeEEeehhhHHHHhHHH---HHHhhccceeehhhhhhhcchhH-HHHHHH
Confidence 754 3444566765555555443322 5688888876655443 35557899999999999966542 223333
Q ss_pred HHHHhhcCccceEEEEccccC
Q psy15524 567 LEILKKQKPQFQSILLSATLT 587 (930)
Q Consensus 567 ~~~l~~~~~~~q~vl~SAT~~ 587 (930)
++.- ..|.++++.|+-
T Consensus 761 lnfn-----sqrRLLLtgTPL 776 (1958)
T KOG0391|consen 761 LNFN-----SQRRLLLTGTPL 776 (1958)
T ss_pred hccc-----hhheeeecCCch
Confidence 3322 345688888853
|
|
| >COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00032 Score=86.77 Aligned_cols=140 Identities=21% Similarity=0.130 Sum_probs=94.1
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHHhhhcCCceeEEeeCCCchHH
Q psy15524 21 GDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKS 100 (930)
Q Consensus 21 ~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 100 (930)
+.-+|+=-||||||+..+..+-..+.. ...+.++||+-.++|-.|..+.|..+........ ...+...
T Consensus 274 ~~G~IWHtqGSGKTlTm~~~A~~l~~~-------~~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~~~~~-----~~~s~~~ 341 (962)
T COG0610 274 KGGYIWHTQGSGKTLTMFKLARLLLEL-------PKNPKVLFVVDRKDLDDQTSDEFQSFGKVAFNDP-----KAESTSE 341 (962)
T ss_pred CceEEEeecCCchHHHHHHHHHHHHhc-------cCCCeEEEEechHHHHHHHHHHHHHHHHhhhhcc-----cccCHHH
Confidence 458888889999999866555433322 3356799999999999999999999876533111 4455566
Q ss_pred HHHHhcCC-CcEEEEChHHHHHHHhcCCCccC-CCccEEEEcccccccccCcHHHHHHHHHHHhhcCCCceEEEEEeecC
Q psy15524 101 EKARIRKG-ISILVATPGRLLDHCKHTETLKF-SKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLT 178 (930)
Q Consensus 101 ~~~~l~~~-~~Ilv~Tp~~l~~~l~~~~~~~l-~~l~~vViDE~h~~~~~~~~~~~~~i~~~l~~~~~~~~~i~lSAT~~ 178 (930)
..+.+..+ -.|+|+|-..+-........... ++=-.||+||||+- .++.....+-..+ ++...+|||+||-
T Consensus 342 Lk~~l~~~~~~ii~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaHRS---Q~G~~~~~~~~~~----~~a~~~gFTGTPi 414 (962)
T COG0610 342 LKELLEDGKGKIIVTTIQKFNKAVKEDELELLKRKNVVVIIDEAHRS---QYGELAKLLKKAL----KKAIFIGFTGTPI 414 (962)
T ss_pred HHHHHhcCCCcEEEEEecccchhhhcccccccCCCcEEEEEechhhc---cccHHHHHHHHHh----ccceEEEeeCCcc
Confidence 66666655 48999999998777654211112 22346789999964 3333333333333 3468999999995
Q ss_pred C
Q psy15524 179 P 179 (930)
Q Consensus 179 ~ 179 (930)
.
T Consensus 415 ~ 415 (962)
T COG0610 415 F 415 (962)
T ss_pred c
Confidence 3
|
|
| >KOG0389|consensus | Back alignment and domain information |
|---|
Probab=97.69 E-value=7.5e-05 Score=84.96 Aligned_cols=157 Identities=19% Similarity=0.261 Sum_probs=100.7
Q ss_pred cCcHHHHHHHHHhh----cCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHH
Q psy15524 5 QVTTVQQLSIQPIL----DGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKL 80 (930)
Q Consensus 5 ~l~~~Q~~ai~~~~----~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~ 80 (930)
+|-++|.--+..+. .+-+.|+.-.-|-|||.- .++.+..+.+.. .+|+ -|||||.--|-+ +.++|.+|
T Consensus 399 ~LkdYQlvGvNWL~Llyk~~l~gILADEMGLGKTiQ-vIaFlayLkq~g-----~~gp-HLVVvPsSTleN-WlrEf~kw 470 (941)
T KOG0389|consen 399 QLKDYQLVGVNWLLLLYKKKLNGILADEMGLGKTIQ-VIAFLAYLKQIG-----NPGP-HLVVVPSSTLEN-WLREFAKW 470 (941)
T ss_pred cccchhhhhHHHHHHHHHccccceehhhccCcchhH-HHHHHHHHHHcC-----CCCC-cEEEecchhHHH-HHHHHHHh
Confidence 47889998887743 466789999999999964 445555554422 1232 689999876543 44455555
Q ss_pred hhhcCCceeEEeeCCCchHHHHHH-hcC---CCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCcHHHHHH
Q psy15524 81 CKSFTWIVPSWLTGGEKMKSEKAR-IRK---GISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAE 156 (930)
Q Consensus 81 ~~~~~~~~~~~~~g~~~~~~~~~~-l~~---~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~~~~~~~ 156 (930)
|+.+.+-.++|........+. +.. .++|+++|...+...-.....+.-.++.++|+||+|.+-...- ..++.
T Consensus 471 ---CPsl~Ve~YyGSq~ER~~lR~~i~~~~~~ydVllTTY~la~~~kdDRsflk~~~~n~viyDEgHmLKN~~S-eRy~~ 546 (941)
T KOG0389|consen 471 ---CPSLKVEPYYGSQDERRELRERIKKNKDDYDVLLTTYNLAASSKDDRSFLKNQKFNYVIYDEGHMLKNRTS-ERYKH 546 (941)
T ss_pred ---CCceEEEeccCcHHHHHHHHHHHhccCCCccEEEEEeecccCChHHHHHHHhccccEEEecchhhhhccch-HHHHH
Confidence 566889999998865544433 222 4899999986654322222334456799999999998755432 11222
Q ss_pred HHHHHhhcCCCceEEEEEeecC
Q psy15524 157 FLEILKKQKPQFQSILLSATLT 178 (930)
Q Consensus 157 i~~~l~~~~~~~~~i~lSAT~~ 178 (930)
++.. + --..++||.||=
T Consensus 547 LM~I----~-An~RlLLTGTPL 563 (941)
T KOG0389|consen 547 LMSI----N-ANFRLLLTGTPL 563 (941)
T ss_pred hccc----c-ccceEEeeCCcc
Confidence 2221 1 125799999984
|
|
| >PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [] | Back alignment and domain information |
|---|
Probab=97.68 E-value=5.6e-05 Score=75.16 Aligned_cols=60 Identities=22% Similarity=0.307 Sum_probs=42.1
Q ss_pred CccCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHH
Q psy15524 3 ITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTREL 69 (930)
Q Consensus 3 ~~~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L 69 (930)
++..++.|+.++.++++..-+++.+|.|+|||+.++..+++.+... .-.+.++.-|..+.
T Consensus 2 I~p~~~~Q~~~~~al~~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g-------~~~kiii~Rp~v~~ 61 (205)
T PF02562_consen 2 IKPKNEEQKFALDALLNNDLVIVNGPAGTGKTFLALAAALELVKEG-------EYDKIIITRPPVEA 61 (205)
T ss_dssp ----SHHHHHHHHHHHH-SEEEEE--TTSSTTHHHHHHHHHHHHTT-------S-SEEEEEE-S--T
T ss_pred ccCCCHHHHHHHHHHHhCCeEEEECCCCCcHHHHHHHHHHHHHHhC-------CCcEEEEEecCCCC
Confidence 4567999999999999888899999999999999999999888652 12357888888863
|
; GO: 0005524 ATP binding; PDB: 3B85_A. |
| >KOG0923|consensus | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.0015 Score=73.13 Aligned_cols=152 Identities=18% Similarity=0.210 Sum_probs=86.5
Q ss_pred cHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHH-hhhcC
Q psy15524 7 TTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKL-CKSFT 85 (930)
Q Consensus 7 ~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~-~~~~~ 85 (930)
+++-.+.+.++.+..=++|.+.||||||. .+| +.+....- ...|.++-+--|.|--|..++.+..+- +..++
T Consensus 267 y~ykdell~av~e~QVLiI~GeTGSGKTT--QiP--QyL~EaGy---tk~gk~IgcTQPRRVAAmSVAaRVA~EMgvkLG 339 (902)
T KOG0923|consen 267 YPYKDELLKAVKEHQVLIIVGETGSGKTT--QIP--QYLYEAGY---TKGGKKIGCTQPRRVAAMSVAARVAEEMGVKLG 339 (902)
T ss_pred hhhHHHHHHHHHhCcEEEEEcCCCCCccc--ccc--HHHHhccc---ccCCceEeecCcchHHHHHHHHHHHHHhCcccc
Confidence 44555666677777789999999999997 455 33333111 122334667779998888887765443 32222
Q ss_pred CceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEccccc-ccccCcHHHHHHHHHHHhhc
Q psy15524 86 WIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADR-ILDQGYERDIAEFLEILKKQ 164 (930)
Q Consensus 86 ~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~-~~~~~~~~~~~~i~~~l~~~ 164 (930)
..++.-. . .........-|-++|-++|+.-+. ....+...+.|||||||. -+. -+.+-.++..+...
T Consensus 340 -~eVGYsI-----R-FEdcTSekTvlKYMTDGmLlREfL--~epdLasYSViiiDEAHERTL~---TDILfgLvKDIar~ 407 (902)
T KOG0923|consen 340 -HEVGYSI-----R-FEDCTSEKTVLKYMTDGMLLREFL--SEPDLASYSVIIVDEAHERTLH---TDILFGLVKDIARF 407 (902)
T ss_pred -cccceEE-----E-eccccCcceeeeeecchhHHHHHh--ccccccceeEEEeehhhhhhhh---hhHHHHHHHHHHhh
Confidence 1111100 0 000111234577999999988665 345688999999999993 111 11122333333333
Q ss_pred CCCceEEEEEeec
Q psy15524 165 KPQFQSILLSATL 177 (930)
Q Consensus 165 ~~~~~~i~lSAT~ 177 (930)
+|+.+++..|||.
T Consensus 408 RpdLKllIsSAT~ 420 (902)
T KOG0923|consen 408 RPDLKLLISSATM 420 (902)
T ss_pred CCcceEEeecccc
Confidence 4455555555554
|
|
| >KOG1000|consensus | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00053 Score=74.11 Aligned_cols=153 Identities=18% Similarity=0.179 Sum_probs=99.1
Q ss_pred ccCcHHHHHHHHHhh-cCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHHhh
Q psy15524 4 TQVTTVQQLSIQPIL-DGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCK 82 (930)
Q Consensus 4 ~~l~~~Q~~ai~~~~-~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~ 82 (930)
..|-|+|.+-+...+ .|..+++.-.-|-|||.-++.-+...... .+ .||++|-. |-..+.+.|+.+..
T Consensus 197 s~LlPFQreGv~faL~RgGR~llADeMGLGKTiQAlaIA~yyraE---------wp-lliVcPAs-vrftWa~al~r~lp 265 (689)
T KOG1000|consen 197 SRLLPFQREGVIFALERGGRILLADEMGLGKTIQALAIARYYRAE---------WP-LLIVCPAS-VRFTWAKALNRFLP 265 (689)
T ss_pred HhhCchhhhhHHHHHhcCCeEEEecccccchHHHHHHHHHHHhhc---------Cc-EEEEecHH-HhHHHHHHHHHhcc
Confidence 467899999998765 67889999999999999765444322221 11 78888864 55667777888765
Q ss_pred hcCCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCcHHHHHHHHHHHh
Q psy15524 83 SFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILK 162 (930)
Q Consensus 83 ~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~~~~~~~i~~~l~ 162 (930)
.+.. +.++.++.+... .+....-|.|.+.+.+..+-.. +.-...+.||+||.|++-+.. -.....+...++
T Consensus 266 s~~p--i~vv~~~~D~~~---~~~t~~~v~ivSye~ls~l~~~---l~~~~~~vvI~DEsH~Lk~sk-tkr~Ka~~dllk 336 (689)
T KOG1000|consen 266 SIHP--IFVVDKSSDPLP---DVCTSNTVAIVSYEQLSLLHDI---LKKEKYRVVIFDESHMLKDSK-TKRTKAATDLLK 336 (689)
T ss_pred cccc--eEEEecccCCcc---ccccCCeEEEEEHHHHHHHHHH---HhcccceEEEEechhhhhccc-hhhhhhhhhHHH
Confidence 4432 333334432211 1122346889999887654321 223458999999999875543 223555555555
Q ss_pred hcCCCceEEEEEeecCC
Q psy15524 163 KQKPQFQSILLSATLTP 179 (930)
Q Consensus 163 ~~~~~~~~i~lSAT~~~ 179 (930)
... ++|+||.||..
T Consensus 337 ~ak---hvILLSGTPav 350 (689)
T KOG1000|consen 337 VAK---HVILLSGTPAV 350 (689)
T ss_pred Hhh---heEEecCCccc
Confidence 544 79999999974
|
|
| >KOG1803|consensus | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.0002 Score=79.73 Aligned_cols=65 Identities=17% Similarity=0.273 Sum_probs=52.9
Q ss_pred CCCHHHHHhHHhhhcCCc-EEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHHH
Q psy15524 414 QVTTVQQLSIQPILDGGD-VLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFT 487 (930)
Q Consensus 414 ~~~~iQ~~~i~~il~~~d-~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~ 487 (930)
.+.+-|++|+....+.++ .++++|+|+|||.+-..-+.+.+.. +.++||.+||.+-+..+.+.+.
T Consensus 185 ~ln~SQk~Av~~~~~~k~l~~I~GPPGTGKT~TlvEiI~qlvk~---------~k~VLVcaPSn~AVdNiverl~ 250 (649)
T KOG1803|consen 185 NLNSSQKAAVSFAINNKDLLIIHGPPGTGKTRTLVEIISQLVKQ---------KKRVLVCAPSNVAVDNIVERLT 250 (649)
T ss_pred cccHHHHHHHHHHhccCCceEeeCCCCCCceeeHHHHHHHHHHc---------CCeEEEEcCchHHHHHHHHHhc
Confidence 567779999999998877 7889999999999855555555443 6889999999999998888643
|
|
| >KOG4439|consensus | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00017 Score=81.06 Aligned_cols=166 Identities=14% Similarity=0.179 Sum_probs=102.2
Q ss_pred cCcHHHHHHHHHhhc-----CCcEEEEcCCCChHHHHHHHHHHHHHHhhCCc-CCCCCCeEEEEEcccHHHHHHHHHHHH
Q psy15524 5 QVTTVQQLSIQPILD-----GGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPK-ISRKDGIYAVIILPTRELALQTLEIFT 78 (930)
Q Consensus 5 ~l~~~Q~~ai~~~~~-----g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~-~~~~~~~~~lvl~P~~~L~~q~~~~~~ 78 (930)
.+-|+|+.++..+.- +..-|+...-|-|||+..+..++..-...+.. ........+|||||- .|+.|+..++.
T Consensus 325 ~LmpHQkaal~Wl~wRE~q~~~GGILaddmGLGKTlsmislil~qK~~~~~~~~~~~~a~~TLII~Pa-Sli~qW~~Ev~ 403 (901)
T KOG4439|consen 325 ELMPHQKAALRWLLWRESQPPSGGILADDMGLGKTLSMISLILHQKAARKAREKKGESASKTLIICPA-SLIHQWEAEVA 403 (901)
T ss_pred ecchhhhhhhhhhcccccCCCCCcccccccccccchHHHHHHHHHHHHHHhhcccccccCCeEEeCcH-HHHHHHHHHHH
Confidence 478999999977652 34578888899999997665555443322211 111112259999995 68899999988
Q ss_pred HHhhhcCCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHH----Hh-cCCCccCCCc--cEEEEcccccccccCcH
Q psy15524 79 KLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDH----CK-HTETLKFSKV--EHLVLDEADRILDQGYE 151 (930)
Q Consensus 79 ~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~----l~-~~~~~~l~~l--~~vViDE~h~~~~~~~~ 151 (930)
.....- .+.+..++|........+.+ ..+||+|+|..-+.+. .. ....-.+.++ ..||+||||.+-...-
T Consensus 404 ~rl~~n-~LsV~~~HG~n~r~i~~~~L-~~YDvViTTY~lva~~~~~e~~~~~~~spL~~I~W~RVILDEAH~IrN~~t- 480 (901)
T KOG4439|consen 404 RRLEQN-ALSVYLYHGPNKREISAKEL-RKYDVVITTYNLVANKPDDELEEGKNSSPLARIAWSRVILDEAHNIRNSNT- 480 (901)
T ss_pred HHHhhc-ceEEEEecCCccccCCHHHH-hhcceEEEeeeccccCCchhhhcccCccHHHHhhHHHhhhhhhhhhcccch-
Confidence 887643 36677777766433333333 4589999998655431 00 0011223333 5699999998865432
Q ss_pred HHHHHHHHHHhhcCCCceEEEEEeecCC
Q psy15524 152 RDIAEFLEILKKQKPQFQSILLSATLTP 179 (930)
Q Consensus 152 ~~~~~i~~~l~~~~~~~~~i~lSAT~~~ 179 (930)
+-...+..|...+ .-++|+||-.
T Consensus 481 -q~S~AVC~L~a~~----RWclTGTPiq 503 (901)
T KOG4439|consen 481 -QCSKAVCKLSAKS----RWCLTGTPIQ 503 (901)
T ss_pred -hHHHHHHHHhhcc----eeecccCccc
Confidence 2233344555444 5678999853
|
|
| >PRK10536 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.0015 Score=66.91 Aligned_cols=61 Identities=20% Similarity=0.181 Sum_probs=45.1
Q ss_pred CCCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHH
Q psy15524 410 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRE 477 (930)
Q Consensus 410 ~~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~Ptre 477 (930)
.++...+..|...+..+.++.-+++.+|+|+|||+......++.+.. +.-.+++|.-|+.+
T Consensus 55 ~~i~p~n~~Q~~~l~al~~~~lV~i~G~aGTGKT~La~a~a~~~l~~-------~~~~kIiI~RP~v~ 115 (262)
T PRK10536 55 SPILARNEAQAHYLKAIESKQLIFATGEAGCGKTWISAAKAAEALIH-------KDVDRIIVTRPVLQ 115 (262)
T ss_pred ccccCCCHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHhc-------CCeeEEEEeCCCCC
Confidence 35666788899999988887779999999999999887777766643 12234555556644
|
|
| >KOG1002|consensus | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00044 Score=74.49 Aligned_cols=152 Identities=16% Similarity=0.186 Sum_probs=95.9
Q ss_pred cCcHHHHHHHHHhhcCC-----cEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHH
Q psy15524 5 QVTTVQQLSIQPILDGG-----DVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTK 79 (930)
Q Consensus 5 ~l~~~Q~~ai~~~~~g~-----~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~ 79 (930)
.|.|+|++-+-.+.... .-++.-.-|.|||.-.+.-++..+ ++..+||++|+.+|+ |+.+++..
T Consensus 184 ~LL~fQkE~l~Wl~~QE~Ss~~GGiLADEMGMGKTIQtIaLllae~----------~ra~tLVvaP~VAlm-QW~nEI~~ 252 (791)
T KOG1002|consen 184 PLLPFQKEGLAWLTSQEESSVAGGILADEMGMGKTIQTIALLLAEV----------DRAPTLVVAPTVALM-QWKNEIER 252 (791)
T ss_pred cchhhhHHHHHHHHHhhhhhhccceehhhhccchHHHHHHHHHhcc----------ccCCeeEEccHHHHH-HHHHHHHH
Confidence 46789999876654322 357778899999987666555432 233499999999986 56667766
Q ss_pred HhhhcCCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcC-CCc-----------cCCCcc--EEEEcccccc
Q psy15524 80 LCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHT-ETL-----------KFSKVE--HLVLDEADRI 145 (930)
Q Consensus 80 ~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~-~~~-----------~l~~l~--~vViDE~h~~ 145 (930)
+.. +...+..++|..... ..+.+ .++|++++|...+-+..+.. ..+ .+.+++ -||+||||.+
T Consensus 253 ~T~--gslkv~~YhG~~R~~-nikel-~~YDvVLTty~vvEs~yRk~~~GfrrKngv~ke~SlLHsi~~~RiIlDEAH~I 328 (791)
T KOG1002|consen 253 HTS--GSLKVYIYHGAKRDK-NIKEL-MNYDVVLTTYAVVESVYRKQDYGFRRKNGVDKEKSLLHSIKFYRIILDEAHNI 328 (791)
T ss_pred hcc--CceEEEEEecccccC-CHHHh-hcCcEEEEecHHHHHHHHhccccccccCCcccccchhhhceeeeeehhhhccc
Confidence 654 446666666665433 22333 35899999998886655431 111 133444 4899999988
Q ss_pred cccCcHHHHHHHHHHHhhcCCCceEEEEEeec
Q psy15524 146 LDQGYERDIAEFLEILKKQKPQFQSILLSATL 177 (930)
Q Consensus 146 ~~~~~~~~~~~i~~~l~~~~~~~~~i~lSAT~ 177 (930)
-+..- .-.+.+..|+.. ....||.||
T Consensus 329 K~R~s--nTArAV~~L~tt----~rw~LSGTP 354 (791)
T KOG1002|consen 329 KDRQS--NTARAVFALETT----YRWCLSGTP 354 (791)
T ss_pred ccccc--cHHHHHHhhHhh----hhhhccCCc
Confidence 65331 122233333333 356788887
|
|
| >KOG1803|consensus | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.00039 Score=77.56 Aligned_cols=65 Identities=17% Similarity=0.273 Sum_probs=54.2
Q ss_pred cCcHHHHHHHHHhhcCCc-EEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHH
Q psy15524 5 QVTTVQQLSIQPILDGGD-VLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFT 78 (930)
Q Consensus 5 ~l~~~Q~~ai~~~~~g~~-~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~ 78 (930)
.+.+-|+.|+..+.+.++ .++++|+|+|||.....-+.+.+.+ +.++||.+||.+-+..+.+++.
T Consensus 185 ~ln~SQk~Av~~~~~~k~l~~I~GPPGTGKT~TlvEiI~qlvk~---------~k~VLVcaPSn~AVdNiverl~ 250 (649)
T KOG1803|consen 185 NLNSSQKAAVSFAINNKDLLIIHGPPGTGKTRTLVEIISQLVKQ---------KKRVLVCAPSNVAVDNIVERLT 250 (649)
T ss_pred cccHHHHHHHHHHhccCCceEeeCCCCCCceeeHHHHHHHHHHc---------CCeEEEEcCchHHHHHHHHHhc
Confidence 578899999999888766 7999999999999877777666654 4569999999999988888654
|
|
| >TIGR00376 DNA helicase, putative | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.0011 Score=78.75 Aligned_cols=67 Identities=19% Similarity=0.322 Sum_probs=52.7
Q ss_pred CCCCHHHHHhHHhhhcC-CcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHHHH
Q psy15524 413 TQVTTVQQLSIQPILDG-GDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTK 488 (930)
Q Consensus 413 ~~~~~iQ~~~i~~il~~-~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~ 488 (930)
..+++.|..|+..++.. ...++.+|+|+|||.+. ..++..+.. .|.++|+++||..-+.++.+.+..
T Consensus 156 ~~ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t~-~~ii~~~~~--------~g~~VLv~a~sn~Avd~l~e~l~~ 223 (637)
T TIGR00376 156 PNLNESQKEAVSFALSSKDLFLIHGPPGTGKTRTL-VELIRQLVK--------RGLRVLVTAPSNIAVDNLLERLAL 223 (637)
T ss_pred CCCCHHHHHHHHHHhcCCCeEEEEcCCCCCHHHHH-HHHHHHHHH--------cCCCEEEEcCcHHHHHHHHHHHHh
Confidence 35788899999999887 45889999999999764 444444332 256899999999999999888876
|
The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases. |
| >KOG1016|consensus | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.014 Score=66.64 Aligned_cols=108 Identities=20% Similarity=0.330 Sum_probs=85.0
Q ss_pred ceEEEEecchhhHHHHHHHHhhhcC---------------CCceEEEecCCCCHHHHHHHHHHhhcCC---CcEEEeccc
Q psy15524 658 SKMLVFMATQDMADYHTELLSTVLG---------------ENIAFFKLHGSMSQSERTEVFKTFRSVK---SGVLICTDV 719 (930)
Q Consensus 658 ~k~iVF~~s~~~~~~~~~~l~~~~~---------------~~~~~~~lhg~~~~~~R~~v~~~F~~~~---~~vLv~T~~ 719 (930)
.++|||..+.-..+.+.+.+.+.-. ++...+.+.|..+..+|++.+++|.+.- .-+|++|..
T Consensus 720 ~kil~fSq~l~~Ld~ieeil~krq~pc~~gdnG~~aqkW~~n~sy~rldG~t~a~~rekLinqfN~e~~lsWlfllstra 799 (1387)
T KOG1016|consen 720 EKILIFSQNLTALDMIEEILKKRQIPCKDGDNGCPAQKWEKNRSYLRLDGTTSAADREKLINQFNSEPGLSWLFLLSTRA 799 (1387)
T ss_pred ceEEEeecchhHHHHHHHHHhcccccCCCCCCCCchhhhhhccceecccCCcccchHHHHHHhccCCCCceeeeeehhcc
Confidence 4777777777766666666654311 1345678899999999999999997532 258999999
Q ss_pred cccccCCCCccEEEEecCCCChhhHHhhhcccccCCCCceEEEEeC
Q psy15524 720 AARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLI 765 (930)
Q Consensus 720 ~~~GlDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~g~~~~~~~ 765 (930)
..-|+++=..+-+|.+|+-+++.--.|.+-|.-|.|+..-|+++-.
T Consensus 800 g~lGinLIsanr~~ifda~wnpchdaqavcRvyrYGQ~KpcfvYRl 845 (1387)
T KOG1016|consen 800 GSLGINLISANRCIIFDACWNPCHDAQAVCRVYRYGQQKPCFVYRL 845 (1387)
T ss_pred ccccceeeccceEEEEEeecCccccchhhhhhhhhcCcCceeEEee
Confidence 9999999777788888888889888999999999999887776544
|
|
| >PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.0005 Score=76.22 Aligned_cols=95 Identities=18% Similarity=0.271 Sum_probs=60.6
Q ss_pred EEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHHHHhhccCCCcceEEEeCCCchHHHH
Q psy15524 432 VLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEK 511 (930)
Q Consensus 432 ~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~ 511 (930)
++|.+..|||||+.++ -++..+.. ...+..+++++++..|...+.+.+..... . +
T Consensus 4 ~~I~G~aGTGKTvla~-~l~~~l~~------~~~~~~~~~l~~n~~l~~~l~~~l~~~~~--~---------~------- 58 (352)
T PF09848_consen 4 ILITGGAGTGKTVLAL-NLAKELQN------SEEGKKVLYLCGNHPLRNKLREQLAKKYN--P---------K------- 58 (352)
T ss_pred EEEEecCCcCHHHHHH-HHHHHhhc------cccCCceEEEEecchHHHHHHHHHhhhcc--c---------c-------
Confidence 7899999999999843 33433311 13477799999999999888777755430 0 0
Q ss_pred HHHhcCCcEEEECchhHHHhhhccCCcccccceEEEEecchhhhhc
Q psy15524 512 ARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQ 557 (930)
Q Consensus 512 ~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~l~~~ 557 (930)
.....+..|..+..... .........++||+||||++.+.
T Consensus 59 -----~~~~~~~~~~~~i~~~~-~~~~~~~~~DviivDEAqrl~~~ 98 (352)
T PF09848_consen 59 -----LKKSDFRKPTSFINNYS-ESDKEKNKYDVIIVDEAQRLRTK 98 (352)
T ss_pred -----hhhhhhhhhHHHHhhcc-cccccCCcCCEEEEehhHhhhhc
Confidence 01122333444433322 12234577999999999999873
|
It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation []. |
| >PF13872 AAA_34: P-loop containing NTP hydrolase pore-1 | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.0024 Score=66.54 Aligned_cols=163 Identities=15% Similarity=0.097 Sum_probs=96.7
Q ss_pred CCCHHHHHhHHhhhc----------CCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHH
Q psy15524 414 QVTTVQQLSIQPILD----------GGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTL 483 (930)
Q Consensus 414 ~~~~iQ~~~i~~il~----------~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~ 483 (930)
.++..|-+++-...+ ....++--.||.||.-...--|++++.+ ...++|+++.+-.|-....
T Consensus 37 ~LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l~--------Gr~r~vwvS~s~dL~~Da~ 108 (303)
T PF13872_consen 37 LLSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWLR--------GRKRAVWVSVSNDLKYDAE 108 (303)
T ss_pred cccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHHc--------CCCceEEEECChhhhhHHH
Confidence 456667776644331 2448889999999988766667777654 2456999999999999999
Q ss_pred HHHHHhhccCCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhcc--CCccc--------cc-ceEEEEecch
Q psy15524 484 EIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHT--ETLKF--------SK-VEHLVLDEAD 552 (930)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~--~~~~~--------~~-l~~lVlDEah 552 (930)
+.++.++.....+. .+..-. .. .. ..-...|+++|...|....... ....+ .+ =.+||+||+|
T Consensus 109 RDl~DIG~~~i~v~--~l~~~~-~~-~~--~~~~~GvlF~TYs~L~~~~~~~~~~~sRl~ql~~W~g~dfdgvivfDEcH 182 (303)
T PF13872_consen 109 RDLRDIGADNIPVH--PLNKFK-YG-DI--IRLKEGVLFSTYSTLISESQSGGKYRSRLDQLVDWCGEDFDGVIVFDECH 182 (303)
T ss_pred HHHHHhCCCcccce--echhhc-cC-cC--CCCCCCccchhHHHHHhHHhccCCccchHHHHHHHHhcCCCceEEeccch
Confidence 99998876532111 111100 00 00 1113458999988876654211 01111 11 2379999999
Q ss_pred hhhhcCcH----HHHHHHHHHHhhcCccceEEEEccccCHHH
Q psy15524 553 RILDQGYE----RDIAEFLEILKKQKPQFQSILLSATLTPAV 590 (930)
Q Consensus 553 ~l~~~g~~----~~l~~i~~~l~~~~~~~q~vl~SAT~~~~~ 590 (930)
..-+..-. ......+..|...-|+.++|.+|||-..+.
T Consensus 183 ~akn~~~~~~~~sk~g~avl~LQ~~LP~ARvvY~SATgasep 224 (303)
T PF13872_consen 183 KAKNLSSGSKKPSKTGIAVLELQNRLPNARVVYASATGASEP 224 (303)
T ss_pred hcCCCCccCccccHHHHHHHHHHHhCCCCcEEEecccccCCC
Confidence 88655321 111111222222234678999999975533
|
|
| >PF13245 AAA_19: Part of AAA domain | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.00063 Score=56.24 Aligned_cols=59 Identities=27% Similarity=0.381 Sum_probs=40.1
Q ss_pred HHhhhcCCc-EEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHH
Q psy15524 423 IQPILDGGD-VLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIF 486 (930)
Q Consensus 423 i~~il~~~d-~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~ 486 (930)
+...+.+.. ++|.+|.|||||.+.+-.+...+... ...+.++++++||+..+.++.+.+
T Consensus 3 v~~al~~~~~~vv~g~pGtGKT~~~~~~i~~l~~~~-----~~~~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 3 VRRALAGSPLFVVQGPPGTGKTTTLAARIAELLAAR-----ADPGKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred HHHHHhhCCeEEEECCCCCCHHHHHHHHHHHHHHHh-----cCCCCeEEEECCCHHHHHHHHHHH
Confidence 443333444 55699999999977444444444211 112778999999999999988887
|
|
| >PRK10875 recD exonuclease V subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.0021 Score=75.44 Aligned_cols=143 Identities=20% Similarity=0.232 Sum_probs=84.4
Q ss_pred CCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHHHHhhccCC
Q psy15524 415 VTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFT 494 (930)
Q Consensus 415 ~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~ 494 (930)
..++|+.|+-..+.++-.++.+++|+|||.+ +.-++..+.... ......+++.+||..-|..+.+.+.......+
T Consensus 153 ~~d~Qk~Av~~a~~~~~~vItGgpGTGKTt~-v~~ll~~l~~~~----~~~~~~i~l~APTgkAA~rL~e~~~~~~~~~~ 227 (615)
T PRK10875 153 EVDWQKVAAAVALTRRISVISGGPGTGKTTT-VAKLLAALIQLA----DGERCRIRLAAPTGKAAARLTESLGKALRQLP 227 (615)
T ss_pred CCHHHHHHHHHHhcCCeEEEEeCCCCCHHHH-HHHHHHHHHHhc----CCCCcEEEEECCcHHHHHHHHHHHHhhhhccc
Confidence 3589999999999988899999999999986 334444443311 12346788999999999988887765443221
Q ss_pred CcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhccC-----CcccccceEEEEecchhhhhcCcHHHHHHHHHH
Q psy15524 495 WIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTE-----TLKFSKVEHLVLDEADRILDQGYERDIAEFLEI 569 (930)
Q Consensus 495 ~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~-----~~~~~~l~~lVlDEah~l~~~g~~~~l~~i~~~ 569 (930)
. .. .. ......-..|--||+....... ..+.-.++++|+|||-++. -..+..+++.
T Consensus 228 ~------~~-----~~----~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIvDEaSMvd----~~lm~~ll~a 288 (615)
T PRK10875 228 L------TD-----EQ----KKRIPEEASTLHRLLGAQPGSQRLRYHAGNPLHLDVLVVDEASMVD----LPMMARLIDA 288 (615)
T ss_pred c------ch-----hh----hhcCCCchHHHHHHhCcCCCccchhhccccCCCCCeEEEChHhccc----HHHHHHHHHh
Confidence 0 00 00 0011111233333332211111 1122346899999999663 2344555555
Q ss_pred HhhcCccceEEEEcc
Q psy15524 570 LKKQKPQFQSILLSA 584 (930)
Q Consensus 570 l~~~~~~~q~vl~SA 584 (930)
++ +..++|++--
T Consensus 289 l~---~~~rlIlvGD 300 (615)
T PRK10875 289 LP---PHARVIFLGD 300 (615)
T ss_pred cc---cCCEEEEecc
Confidence 54 4677777653
|
|
| >PF13872 AAA_34: P-loop containing NTP hydrolase pore-1 | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.0038 Score=65.16 Aligned_cols=167 Identities=16% Similarity=0.077 Sum_probs=105.5
Q ss_pred cCcHHHHHHHHHhhc----------CCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHH
Q psy15524 5 QVTTVQQLSIQPILD----------GGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTL 74 (930)
Q Consensus 5 ~l~~~Q~~ai~~~~~----------g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~ 74 (930)
.|+..|-+++-.+.. +...++--.||.||.-...--+++...+.+ .++|+++.+..|-.+..
T Consensus 37 ~LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l~Gr--------~r~vwvS~s~dL~~Da~ 108 (303)
T PF13872_consen 37 LLSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWLRGR--------KRAVWVSVSNDLKYDAE 108 (303)
T ss_pred cccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHHcCC--------CceEEEECChhhhhHHH
Confidence 478999999876541 235788888999998876666666665522 24999999999999999
Q ss_pred HHHHHHhhhcCCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcC--CCccC---------CCccEEEEcccc
Q psy15524 75 EIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHT--ETLKF---------SKVEHLVLDEAD 143 (930)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~--~~~~l---------~~l~~vViDE~h 143 (930)
+.++.++... +.+..+..-... ....-.-.||++|...|....... ....+ +.=.+||+||||
T Consensus 109 RDl~DIG~~~--i~v~~l~~~~~~----~~~~~~~GvlF~TYs~L~~~~~~~~~~~sRl~ql~~W~g~dfdgvivfDEcH 182 (303)
T PF13872_consen 109 RDLRDIGADN--IPVHPLNKFKYG----DIIRLKEGVLFSTYSTLISESQSGGKYRSRLDQLVDWCGEDFDGVIVFDECH 182 (303)
T ss_pred HHHHHhCCCc--ccceechhhccC----cCCCCCCCccchhHHHHHhHHhccCCccchHHHHHHHHhcCCCceEEeccch
Confidence 9999887542 222211111000 001223469999998887664211 01111 122589999999
Q ss_pred cccccCc----HHHHHHHHHHHhhcCCCceEEEEEeecCCCccccc
Q psy15524 144 RILDQGY----ERDIAEFLEILKKQKPQFQSILLSATLTPATCWCK 185 (930)
Q Consensus 144 ~~~~~~~----~~~~~~i~~~l~~~~~~~~~i~lSAT~~~~~~~~~ 185 (930)
.+-...- .......+..|.+.-|+.+++..|||...+...+.
T Consensus 183 ~akn~~~~~~~~sk~g~avl~LQ~~LP~ARvvY~SATgasep~Nma 228 (303)
T PF13872_consen 183 KAKNLSSGSKKPSKTGIAVLELQNRLPNARVVYASATGASEPRNMA 228 (303)
T ss_pred hcCCCCccCccccHHHHHHHHHHHhCCCCcEEEecccccCCCceee
Confidence 9865432 12333344445555577889999999976544443
|
|
| >KOG1802|consensus | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.0013 Score=73.62 Aligned_cols=74 Identities=18% Similarity=0.190 Sum_probs=61.5
Q ss_pred cCCCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHHHH
Q psy15524 409 GMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTK 488 (930)
Q Consensus 409 ~~~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~ 488 (930)
..++.+++.-|..|+.++|+..=-++++|.|+|||.+-.--+++.+.. .+..+||++|+---+.|+++.+.+
T Consensus 405 ~~~lpkLN~SQ~~AV~~VL~rplsLIQGPPGTGKTvtsa~IVyhl~~~--------~~~~VLvcApSNiAVDqLaeKIh~ 476 (935)
T KOG1802|consen 405 VPNLPKLNASQSNAVKHVLQRPLSLIQGPPGTGKTVTSATIVYHLARQ--------HAGPVLVCAPSNIAVDQLAEKIHK 476 (935)
T ss_pred CCCchhhchHHHHHHHHHHcCCceeeecCCCCCceehhHHHHHHHHHh--------cCCceEEEcccchhHHHHHHHHHh
Confidence 468889999999999999998889999999999999865555555443 355699999999999999988876
Q ss_pred hh
Q psy15524 489 LC 490 (930)
Q Consensus 489 ~~ 490 (930)
-+
T Consensus 477 tg 478 (935)
T KOG1802|consen 477 TG 478 (935)
T ss_pred cC
Confidence 54
|
|
| >TIGR00376 DNA helicase, putative | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.0018 Score=77.01 Aligned_cols=66 Identities=20% Similarity=0.252 Sum_probs=53.0
Q ss_pred cCcHHHHHHHHHhhcC-CcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHH
Q psy15524 5 QVTTVQQLSIQPILDG-GDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTK 79 (930)
Q Consensus 5 ~l~~~Q~~ai~~~~~g-~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~ 79 (930)
.+++.|..|+..++.. ..++|.||+|+|||....-.+.+.+.. +.++|+++||..-+.++.+++..
T Consensus 157 ~ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t~~~ii~~~~~~---------g~~VLv~a~sn~Avd~l~e~l~~ 223 (637)
T TIGR00376 157 NLNESQKEAVSFALSSKDLFLIHGPPGTGKTRTLVELIRQLVKR---------GLRVLVTAPSNIAVDNLLERLAL 223 (637)
T ss_pred CCCHHHHHHHHHHhcCCCeEEEEcCCCCCHHHHHHHHHHHHHHc---------CCCEEEEcCcHHHHHHHHHHHHh
Confidence 5799999999998876 578999999999998655444444432 34699999999999999888876
|
The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases. |
| >TIGR01447 recD exodeoxyribonuclease V, alpha subunit | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.0029 Score=74.15 Aligned_cols=142 Identities=23% Similarity=0.270 Sum_probs=84.2
Q ss_pred HHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHHHHhhccCCCc
Q psy15524 417 TVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWI 496 (930)
Q Consensus 417 ~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~ 496 (930)
++|+.|+..++.++-.++.++.|+|||.+ +..++..+....+. ..+.++++.+||---|..+.+.+.........
T Consensus 148 ~~Qk~A~~~al~~~~~vitGgpGTGKTt~-v~~ll~~l~~~~~~---~~~~~I~l~APTGkAA~rL~e~~~~~~~~l~~- 222 (586)
T TIGR01447 148 NWQKVAVALALKSNFSLITGGPGTGKTTT-VARLLLALVKQSPK---QGKLRIALAAPTGKAAARLAESLRKAVKNLAA- 222 (586)
T ss_pred HHHHHHHHHHhhCCeEEEEcCCCCCHHHH-HHHHHHHHHHhccc---cCCCcEEEECCcHHHHHHHHHHHHhhhccccc-
Confidence 68999999999998899999999999986 44455444432111 11357999999998888877766553322110
Q ss_pred ceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhccC-----CcccccceEEEEecchhhhhcCcHHHHHHHHHHHh
Q psy15524 497 VPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTE-----TLKFSKVEHLVLDEADRILDQGYERDIAEFLEILK 571 (930)
Q Consensus 497 ~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~-----~~~~~~l~~lVlDEah~l~~~g~~~~l~~i~~~l~ 571 (930)
. .. ......+-..|-.+++....... ..+...+++||||||-++.- ..+..+++.++
T Consensus 223 -----~-----~~----~~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIiDEaSMvd~----~l~~~ll~al~ 284 (586)
T TIGR01447 223 -----A-----EA----LIAALPSEAVTIHRLLGIKPDTKRFRHHERNPLPLDVLVVDEASMVDL----PLMAKLLKALP 284 (586)
T ss_pred -----c-----hh----hhhccccccchhhhhhcccCCcchhhhcccCCCcccEEEEcccccCCH----HHHHHHHHhcC
Confidence 0 00 00111122344444432211100 11233589999999997642 34555666554
Q ss_pred hcCccceEEEEcc
Q psy15524 572 KQKPQFQSILLSA 584 (930)
Q Consensus 572 ~~~~~~q~vl~SA 584 (930)
+..++|++--
T Consensus 285 ---~~~rlIlvGD 294 (586)
T TIGR01447 285 ---PNTKLILLGD 294 (586)
T ss_pred ---CCCEEEEECC
Confidence 3677777643
|
This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model. |
| >PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.0018 Score=65.12 Aligned_cols=137 Identities=18% Similarity=0.239 Sum_probs=86.0
Q ss_pred cCcHHHHHHHHHhhc---CCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHHh
Q psy15524 5 QVTTVQQLSIQPILD---GGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLC 81 (930)
Q Consensus 5 ~l~~~Q~~ai~~~~~---g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~ 81 (930)
.+++.|.+....+.+ |.|.+.+.-.|.|||.+ ++|++..+.... ...+.+++| ++|..|..+.+....
T Consensus 23 liR~~Q~~ia~~mi~~~~~~n~v~QlnMGeGKTsV-I~Pmla~~LAdg-------~~LvrviVp-k~Ll~q~~~~L~~~l 93 (229)
T PF12340_consen 23 LIRPVQVEIAREMISPPSGKNSVMQLNMGEGKTSV-IVPMLALALADG-------SRLVRVIVP-KALLEQMRQMLRSRL 93 (229)
T ss_pred eeeHHHHHHHHHHhCCCCCCCeEeeecccCCccch-HHHHHHHHHcCC-------CcEEEEEcC-HHHHHHHHHHHHHHH
Confidence 368999999988775 67999999999999987 788887776522 233556666 669999999988877
Q ss_pred hhcCCceeEE--eeCCCchH-H----H---HHHhcCCCcEEEEChHHHHHHHhcC------CCcc-----------CCCc
Q psy15524 82 KSFTWIVPSW--LTGGEKMK-S----E---KARIRKGISILVATPGRLLDHCKHT------ETLK-----------FSKV 134 (930)
Q Consensus 82 ~~~~~~~~~~--~~g~~~~~-~----~---~~~l~~~~~Ilv~Tp~~l~~~l~~~------~~~~-----------l~~l 134 (930)
+..-...+.. .+-..... . . .+.....-.|+++|||.++++.-.. +... ++.-
T Consensus 94 g~l~~r~i~~lpFsR~~~~~~~~~~~~~~l~~~~~~~~gill~~PEhilSf~L~~le~l~~~~~~~~~~l~~~q~~l~~~ 173 (229)
T PF12340_consen 94 GGLLNRRIYHLPFSRSTPLTPETLEKIRQLLEECMRSGGILLATPEHILSFKLKGLERLQDGKPEEARELLKIQKWLDEH 173 (229)
T ss_pred HHHhCCeeEEecccCCCCCCHHHHHHHHHHHHHHHHcCCEEEeChHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhc
Confidence 6533222221 11111111 1 1 1112234569999999987653210 1000 2334
Q ss_pred cEEEEcccccccccCc
Q psy15524 135 EHLVLDEADRILDQGY 150 (930)
Q Consensus 135 ~~vViDE~h~~~~~~~ 150 (930)
..=|+||+|.++.-.|
T Consensus 174 ~rdilDEsDe~L~~k~ 189 (229)
T PF12340_consen 174 SRDILDESDEILSVKY 189 (229)
T ss_pred CCeEeECchhccCcce
Confidence 4468999998876544
|
There are two conserved sequence motifs: LLE and NMG. |
| >KOG1802|consensus | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.0014 Score=73.48 Aligned_cols=72 Identities=18% Similarity=0.221 Sum_probs=58.2
Q ss_pred CCccCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHHh
Q psy15524 2 NITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLC 81 (930)
Q Consensus 2 g~~~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~ 81 (930)
|...|+.-|..|+.+++...=.|+++|+|+|||..-.--+++.+.. .++.+||.+|+.--+.|+++.+.+.+
T Consensus 407 ~lpkLN~SQ~~AV~~VL~rplsLIQGPPGTGKTvtsa~IVyhl~~~--------~~~~VLvcApSNiAVDqLaeKIh~tg 478 (935)
T KOG1802|consen 407 NLPKLNASQSNAVKHVLQRPLSLIQGPPGTGKTVTSATIVYHLARQ--------HAGPVLVCAPSNIAVDQLAEKIHKTG 478 (935)
T ss_pred CchhhchHHHHHHHHHHcCCceeeecCCCCCceehhHHHHHHHHHh--------cCCceEEEcccchhHHHHHHHHHhcC
Confidence 5678899999999999999899999999999998755444444332 24559999999999999988886654
|
|
| >PF13245 AAA_19: Part of AAA domain | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0013 Score=54.37 Aligned_cols=60 Identities=27% Similarity=0.381 Sum_probs=41.6
Q ss_pred HHHHhhcCCc-EEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHH
Q psy15524 13 SIQPILDGGD-VLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIF 77 (930)
Q Consensus 13 ai~~~~~g~~-~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~ 77 (930)
|+...+.+.+ ++|.+|.|||||....--+...+.... .++..+++++|++..+.++.+++
T Consensus 2 av~~al~~~~~~vv~g~pGtGKT~~~~~~i~~l~~~~~-----~~~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 2 AVRRALAGSPLFVVQGPPGTGKTTTLAARIAELLAARA-----DPGKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred HHHHHHhhCCeEEEECCCCCCHHHHHHHHHHHHHHHhc-----CCCCeEEEECCCHHHHHHHHHHH
Confidence 4554444444 556999999999775555555443211 11456999999999999999888
|
|
| >PRK10536 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0031 Score=64.62 Aligned_cols=60 Identities=18% Similarity=0.166 Sum_probs=45.3
Q ss_pred CCccCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHH
Q psy15524 2 NITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRE 68 (930)
Q Consensus 2 g~~~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~ 68 (930)
|+...+..|...+.++..+..+++.+|+|+|||+.....+++.+... .-.++++.-|+.+
T Consensus 56 ~i~p~n~~Q~~~l~al~~~~lV~i~G~aGTGKT~La~a~a~~~l~~~-------~~~kIiI~RP~v~ 115 (262)
T PRK10536 56 PILARNEAQAHYLKAIESKQLIFATGEAGCGKTWISAAKAAEALIHK-------DVDRIIVTRPVLQ 115 (262)
T ss_pred cccCCCHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHhcC-------CeeEEEEeCCCCC
Confidence 45667899999999998888899999999999999888877666431 1223555556654
|
|
| >KOG0953|consensus | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.0018 Score=71.32 Aligned_cols=106 Identities=23% Similarity=0.166 Sum_probs=74.4
Q ss_pred EEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHHhhhcCCceeEEeeCCCchHHHH
Q psy15524 23 VLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEK 102 (930)
Q Consensus 23 ~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 102 (930)
++=++||.||||.- +++++... ...++--|.+-||.++++++++.+ +.+..++|.+......
T Consensus 194 i~H~GPTNSGKTy~----ALqrl~~a---------ksGvycGPLrLLA~EV~~r~na~g-----ipCdL~TGeE~~~~~~ 255 (700)
T KOG0953|consen 194 IMHVGPTNSGKTYR----ALQRLKSA---------KSGVYCGPLRLLAHEVYDRLNALG-----IPCDLLTGEERRFVLD 255 (700)
T ss_pred EEEeCCCCCchhHH----HHHHHhhh---------ccceecchHHHHHHHHHHHhhhcC-----CCccccccceeeecCC
Confidence 66789999999986 56666542 237899999999999999998876 4455566665432221
Q ss_pred HHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCcHHHHHHH
Q psy15524 103 ARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEF 157 (930)
Q Consensus 103 ~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~~~~~~~i 157 (930)
. ...+..+-||-|+..- -...+..||||+.+|.|..++..+.+.
T Consensus 256 ~--~~~a~hvScTVEM~sv---------~~~yeVAViDEIQmm~Dp~RGwAWTrA 299 (700)
T KOG0953|consen 256 N--GNPAQHVSCTVEMVSV---------NTPYEVAVIDEIQMMRDPSRGWAWTRA 299 (700)
T ss_pred C--CCcccceEEEEEEeec---------CCceEEEEehhHHhhcCcccchHHHHH
Confidence 1 1225677788765411 235789999999999998877665543
|
|
| >TIGR01448 recD_rel helicase, putative, RecD/TraA family | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.0047 Score=74.60 Aligned_cols=65 Identities=20% Similarity=0.227 Sum_probs=48.9
Q ss_pred CCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHH
Q psy15524 413 TQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLE 484 (930)
Q Consensus 413 ~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~ 484 (930)
..+++.|++|+..+..++-+++.++.|+|||.+ +-.+++.+... .+...+++++||-.-|..+.+
T Consensus 322 ~~l~~~Q~~Ai~~~~~~~~~iitGgpGTGKTt~-l~~i~~~~~~~------~~~~~v~l~ApTg~AA~~L~e 386 (720)
T TIGR01448 322 KGLSEEQKQALDTAIQHKVVILTGGPGTGKTTI-TRAIIELAEEL------GGLLPVGLAAPTGRAAKRLGE 386 (720)
T ss_pred CCCCHHHHHHHHHHHhCCeEEEECCCCCCHHHH-HHHHHHHHHHc------CCCceEEEEeCchHHHHHHHH
Confidence 368999999999999888899999999999975 34555544431 111568889999888865543
|
This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD. |
| >PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.0026 Score=70.49 Aligned_cols=95 Identities=18% Similarity=0.214 Sum_probs=61.6
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHHhhhcCCceeEEeeCCCchHHH
Q psy15524 22 DVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSE 101 (930)
Q Consensus 22 ~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 101 (930)
-++|.+..|||||++.+--+... .. ...+..++++++..+|...+.+.+..... .
T Consensus 3 v~~I~G~aGTGKTvla~~l~~~l-~~------~~~~~~~~~l~~n~~l~~~l~~~l~~~~~--~---------------- 57 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALNLAKEL-QN------SEEGKKVLYLCGNHPLRNKLREQLAKKYN--P---------------- 57 (352)
T ss_pred EEEEEecCCcCHHHHHHHHHHHh-hc------cccCCceEEEEecchHHHHHHHHHhhhcc--c----------------
Confidence 37899999999999865544433 11 12355699999999999988887755430 0
Q ss_pred HHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccc
Q psy15524 102 KARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILD 147 (930)
Q Consensus 102 ~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~ 147 (930)
......+..|..+.+... .........++|||||||++.+
T Consensus 58 -----~~~~~~~~~~~~~i~~~~-~~~~~~~~~DviivDEAqrl~~ 97 (352)
T PF09848_consen 58 -----KLKKSDFRKPTSFINNYS-ESDKEKNKYDVIIVDEAQRLRT 97 (352)
T ss_pred -----chhhhhhhhhHHHHhhcc-cccccCCcCCEEEEehhHhhhh
Confidence 001223334444443332 1223457899999999999987
|
It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation []. |
| >PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.0034 Score=68.65 Aligned_cols=125 Identities=18% Similarity=0.087 Sum_probs=76.5
Q ss_pred CCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHHHHhhccCC
Q psy15524 415 VTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFT 494 (930)
Q Consensus 415 ~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~ 494 (930)
+|+-|.++|.. ....++|.|..|||||.+.+--++..+.... .+..++|++++|+..|.++.+.+...+....
T Consensus 1 l~~eQ~~~i~~--~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~-----~~~~~Il~lTft~~aa~e~~~ri~~~l~~~~ 73 (315)
T PF00580_consen 1 LTDEQRRIIRS--TEGPLLVNAGAGSGKTTTLLERIAYLLYEGG-----VPPERILVLTFTNAAAQEMRERIRELLEEEQ 73 (315)
T ss_dssp S-HHHHHHHHS---SSEEEEEE-TTSSHHHHHHHHHHHHHHTSS-----STGGGEEEEESSHHHHHHHHHHHHHHHHHCC
T ss_pred CCHHHHHHHhC--CCCCEEEEeCCCCCchHHHHHHHHHhhcccc-----CChHHheecccCHHHHHHHHHHHHHhcCccc
Confidence 57889999988 6788999999999999986666666665421 2345699999999999999999988765321
Q ss_pred CcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhh-hccCCcccccceEEEEecchh
Q psy15524 495 WIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHC-KHTETLKFSKVEHLVLDEADR 553 (930)
Q Consensus 495 ~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l-~~~~~~~~~~l~~lVlDEah~ 553 (930)
... ...............+.|+|-..+...+ +......--.-++-++|+...
T Consensus 74 ~~~-------~~~~~~~~~~~~~~~~~i~T~hsf~~~ll~~~~~~~~~~~~~~i~~~~~~ 126 (315)
T PF00580_consen 74 QES-------SDNERLRRQLSNIDRIYISTFHSFCYRLLREYGYEIGIDPNFEILDEEEQ 126 (315)
T ss_dssp HCC-------TT-HHHHHHHHHCTTSEEEEHHHHHHHHHHHHHGGTTSHTTTEEECHHHH
T ss_pred ccc-------cccccccccccccchheeehhhhhhhhhhhhhhhhhhccccceeecchhc
Confidence 100 0001111222234578889977764433 221111111234567777773
|
THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A .... |
| >TIGR01447 recD exodeoxyribonuclease V, alpha subunit | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.015 Score=68.32 Aligned_cols=70 Identities=21% Similarity=0.293 Sum_probs=49.2
Q ss_pred cHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHH
Q psy15524 7 TTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKL 80 (930)
Q Consensus 7 ~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~ 80 (930)
.++|+.|+..++.++-+++.++.|+|||.+. ..++..+....+. ..+.++++.+||-.=+..+.+.+...
T Consensus 147 ~~~Qk~A~~~al~~~~~vitGgpGTGKTt~v-~~ll~~l~~~~~~---~~~~~I~l~APTGkAA~rL~e~~~~~ 216 (586)
T TIGR01447 147 QNWQKVAVALALKSNFSLITGGPGTGKTTTV-ARLLLALVKQSPK---QGKLRIALAAPTGKAAARLAESLRKA 216 (586)
T ss_pred cHHHHHHHHHHhhCCeEEEEcCCCCCHHHHH-HHHHHHHHHhccc---cCCCcEEEECCcHHHHHHHHHHHHhh
Confidence 3789999999999989999999999999863 2333333321111 11246899999988777777665543
|
This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model. |
| >PRK10875 recD exonuclease V subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.013 Score=68.95 Aligned_cols=70 Identities=19% Similarity=0.200 Sum_probs=50.2
Q ss_pred cHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHHh
Q psy15524 7 TTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLC 81 (930)
Q Consensus 7 ~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~ 81 (930)
.++|+.|+...+.++-++|.+++|+|||.+.. -++..+.... ......+++.+||..=+..+.+.+....
T Consensus 154 ~d~Qk~Av~~a~~~~~~vItGgpGTGKTt~v~-~ll~~l~~~~----~~~~~~i~l~APTgkAA~rL~e~~~~~~ 223 (615)
T PRK10875 154 VDWQKVAAAVALTRRISVISGGPGTGKTTTVA-KLLAALIQLA----DGERCRIRLAAPTGKAAARLTESLGKAL 223 (615)
T ss_pred CHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHH-HHHHHHHHhc----CCCCcEEEEECCcHHHHHHHHHHHHhhh
Confidence 58999999999998899999999999998632 2223332211 0123458889999988888777665543
|
|
| >PRK12900 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.0024 Score=76.40 Aligned_cols=130 Identities=18% Similarity=0.180 Sum_probs=85.5
Q ss_pred HHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHHhhhcCCc
Q psy15524 8 TVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWI 87 (930)
Q Consensus 8 ~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~ 87 (930)
|+-.+.+..+.-...-|..+.||-|||+++.+|++-..+. |..|=|+...-=||..=.+++..+...++ +
T Consensus 139 ~ydVQLiGgivLh~G~IAEM~TGEGKTLvatlp~yLnAL~---------G~gVHvVTvNDYLA~RDaewm~p~y~flG-L 208 (1025)
T PRK12900 139 PYDVQLIGGIVLHSGKISEMATGEGKTLVSTLPTFLNALT---------GRGVHVVTVNDYLAQRDKEWMNPVFEFHG-L 208 (1025)
T ss_pred ccchHHhhhHHhhcCCccccCCCCCcchHhHHHHHHHHHc---------CCCcEEEeechHhhhhhHHHHHHHHHHhC-C
Confidence 3334444554444556899999999999999998766554 23366666666688877777777777666 7
Q ss_pred eeEEeeCCCchHHHHHHhcCCCcEEEEChHHH-HHHHhcC-----CCccCCCccEEEEccccccc-ccC
Q psy15524 88 VPSWLTGGEKMKSEKARIRKGISILVATPGRL-LDHCKHT-----ETLKFSKVEHLVLDEADRIL-DQG 149 (930)
Q Consensus 88 ~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l-~~~l~~~-----~~~~l~~l~~vViDE~h~~~-~~~ 149 (930)
.+++...+..... +.-.-.|||.+||..-+ .+.|+.+ ...-.+.+.+.||||+|.++ |..
T Consensus 209 tVg~i~~~~~~~~--Rr~aY~~DItYgTn~EfGFDYLRDnma~~~~~~vqR~~~faIVDEvDSvLIDeA 275 (1025)
T PRK12900 209 SVGVILNTMRPEE--RREQYLCDITYGTNNEFGFDYLRDNMAGTPEEMVQRDFYFAIVDEVDSVLIDEA 275 (1025)
T ss_pred eeeeeCCCCCHHH--HHHhCCCcceecCCCccccccchhccccchhhhhccCCceEEEechhhhhhccc
Confidence 7777755433332 23344689999998665 2222221 12224778999999999764 433
|
|
| >PRK12901 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.0027 Score=76.00 Aligned_cols=130 Identities=19% Similarity=0.178 Sum_probs=85.3
Q ss_pred CcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHHhhhcC
Q psy15524 6 VTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFT 85 (930)
Q Consensus 6 l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~ 85 (930)
++|+-.+.+..+.-...-+..+.||-|||+++.+|++-..+. |..+-|+...-=||.-=++++..+...++
T Consensus 168 m~~yDVQliGgivLh~G~IAEM~TGEGKTLvAtlp~yLnAL~---------GkgVHvVTVNDYLA~RDaewmgply~fLG 238 (1112)
T PRK12901 168 MVHYDVQLIGGVVLHQGKIAEMATGEGKTLVATLPVYLNALT---------GNGVHVVTVNDYLAKRDSEWMGPLYEFHG 238 (1112)
T ss_pred CcccchHHhhhhhhcCCceeeecCCCCchhHHHHHHHHHHHc---------CCCcEEEEechhhhhccHHHHHHHHHHhC
Confidence 344444455555555667999999999999999998766554 23366666666788777777777776666
Q ss_pred CceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHH-HHHhcC-----CCccCCCccEEEEccccccc
Q psy15524 86 WIVPSWLTGGEKMKSEKARIRKGISILVATPGRLL-DHCKHT-----ETLKFSKVEHLVLDEADRIL 146 (930)
Q Consensus 86 ~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~-~~l~~~-----~~~~l~~l~~vViDE~h~~~ 146 (930)
+.+++........ ..+.-.-.|||.+||..-+- +.|+.+ .....+.+.+.||||+|.++
T Consensus 239 -Lsvg~i~~~~~~~-~~rr~aY~~DItYgTn~EfGFDYLRDnm~~~~~~~vqR~~~fAIVDEvDSIL 303 (1112)
T PRK12901 239 -LSVDCIDKHQPNS-EARRKAYNADITYGTNNEFGFDYLRDNMAHSPEDLVQRKHNYAIVDEVDSVL 303 (1112)
T ss_pred -CceeecCCCCCCH-HHHHHhCCCcceecCCCccccccchhccccchHhhhCcCCceeEeechhhhh
Confidence 6777664422222 22333446899999986652 222221 12225678999999999764
|
|
| >PRK13889 conjugal transfer relaxase TraA; Provisional | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.009 Score=73.50 Aligned_cols=60 Identities=17% Similarity=0.073 Sum_probs=46.8
Q ss_pred CCCHHHHHhHHhhhcCCc-EEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHH
Q psy15524 414 QVTTVQQLSIQPILDGGD-VLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQT 482 (930)
Q Consensus 414 ~~~~iQ~~~i~~il~~~d-~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~ 482 (930)
.+++-|.+|+..++.+++ +++.++.|+|||.+ +-.+.+.+.. .|..++.++||---|..+
T Consensus 346 ~Ls~eQr~Av~~il~s~~v~vv~G~AGTGKTT~-l~~~~~~~e~--------~G~~V~~~ApTGkAA~~L 406 (988)
T PRK13889 346 VLSGEQADALAHVTDGRDLGVVVGYAGTGKSAM-LGVAREAWEA--------AGYEVRGAALSGIAAENL 406 (988)
T ss_pred CCCHHHHHHHHHHhcCCCeEEEEeCCCCCHHHH-HHHHHHHHHH--------cCCeEEEecCcHHHHHHH
Confidence 689999999999998776 78999999999985 4444444432 377899999997666544
|
|
| >COG3587 Restriction endonuclease [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.0054 Score=71.19 Aligned_cols=144 Identities=14% Similarity=0.197 Sum_probs=77.2
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHHhhhc-----CCceeEEeeCCC
Q psy15524 22 DVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSF-----TWIVPSWLTGGE 96 (930)
Q Consensus 22 ~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~-----~~~~~~~~~g~~ 96 (930)
|+=|.+.||+|||.||+-.|...=.. -+-.+-+|+||+.+.-.-++........++ .......+....
T Consensus 76 NiDI~METGTGKTy~YlrtmfeLhk~-------YG~~KFIivVPs~AIkeGv~~~s~~~~ehF~k~~Yent~~e~~i~~~ 148 (985)
T COG3587 76 NIDILMETGTGKTYTYLRTMFELHKK-------YGLFKFIIVVPSLAIKEGVFLTSKETTEHFFKSEYENTRLESYIYDE 148 (985)
T ss_pred eeeEEEecCCCceeeHHHHHHHHHHH-------hCceeEEEEeccHHHHhhhHHHHHHHHHHHhhhhccCcceeEEeech
Confidence 68889999999999998877643221 234678999999997655444443333322 212222222222
Q ss_pred chHHHHHHhcCCCcEEEEChHHHHHH------HhcCCCccCCC--------------c-cEEEEcccccccccCcHHHHH
Q psy15524 97 KMKSEKARIRKGISILVATPGRLLDH------CKHTETLKFSK--------------V-EHLVLDEADRILDQGYERDIA 155 (930)
Q Consensus 97 ~~~~~~~~l~~~~~Ilv~Tp~~l~~~------l~~~~~~~l~~--------------l-~~vViDE~h~~~~~~~~~~~~ 155 (930)
......-.....+.+++.|......- +.+ ......+ + -.|||||=|.|.... ..+.
T Consensus 149 ~~~~~~~~~~~~~~vLl~~~~Afnk~~inan~iN~-~s~~~~~~~~~~~spvd~la~~rPIvIvDEPh~f~~~~--k~~~ 225 (985)
T COG3587 149 DIEKFKFKSNNKPCVLLIFVSAFNKEEINANMINS-ESMENTNLFNGATSPVDALASMRPIVIVDEPHRFLGDD--KTYG 225 (985)
T ss_pred HHHHHhhccCCCceEEEEehhhhccccccccccch-hhhcccCccccccCHHHHHHhcCCEEEecChhhcccch--HHHH
Confidence 22222222234577888886554322 111 1111111 1 268999999997631 1111
Q ss_pred HHHHHHhhcCCCceEEEEEeecCCC
Q psy15524 156 EFLEILKKQKPQFQSILLSATLTPA 180 (930)
Q Consensus 156 ~i~~~l~~~~~~~~~i~lSAT~~~~ 180 (930)
.+.. +.. .-++=++||....
T Consensus 226 ~i~~-l~p----l~ilRfgATfkd~ 245 (985)
T COG3587 226 AIKQ-LNP----LLILRFGATFKDE 245 (985)
T ss_pred HHHh-hCc----eEEEEecccchhh
Confidence 1111 111 1267799999754
|
|
| >PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.0053 Score=67.13 Aligned_cols=71 Identities=25% Similarity=0.199 Sum_probs=55.6
Q ss_pred CcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHHhhh
Q psy15524 6 VTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKS 83 (930)
Q Consensus 6 l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~ 83 (930)
|++-|.+++.. ...+++|.|+.|||||.+.+.-++..+.... .+..++|++++|++.+.++.+++......
T Consensus 1 l~~eQ~~~i~~--~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~-----~~~~~Il~lTft~~aa~e~~~ri~~~l~~ 71 (315)
T PF00580_consen 1 LTDEQRRIIRS--TEGPLLVNAGAGSGKTTTLLERIAYLLYEGG-----VPPERILVLTFTNAAAQEMRERIRELLEE 71 (315)
T ss_dssp S-HHHHHHHHS---SSEEEEEE-TTSSHHHHHHHHHHHHHHTSS-----STGGGEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHhC--CCCCEEEEeCCCCCchHHHHHHHHHhhcccc-----CChHHheecccCHHHHHHHHHHHHHhcCc
Confidence 68899999988 5669999999999999987777766665432 22445999999999999999999987654
|
THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A .... |
| >KOG1132|consensus | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.01 Score=69.34 Aligned_cols=77 Identities=18% Similarity=0.153 Sum_probs=49.0
Q ss_pred CCCHHHHHhHHhhh----cCCcEEEEccCCCchhHHhhHHHHHHHHhhC---c----ccCC-------------------
Q psy15524 414 QVTTVQQLSIQPIL----DGGDVLVRSQTGSGKTLAYAIPIIQKLQEMR---P----KISR------------------- 463 (930)
Q Consensus 414 ~~~~iQ~~~i~~il----~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~---~----~~~~------------------- 463 (930)
+|++.|..-+..++ ...+.++.+|||+|||++.+-..+....... + ...+
T Consensus 21 qpY~~Q~a~M~rvl~~L~~~q~~llESPTGTGKSLsLLCS~LAW~q~~k~~~~~~~~s~~~~~~~p~~~s~~~g~~s~e~ 100 (945)
T KOG1132|consen 21 QPYPTQLAFMTRVLSCLDRKQNGLLESPTGTGKSLSLLCSTLAWQQHLKSRKPKGKISERKAGFIPTQPSDSGGEKSEEA 100 (945)
T ss_pred CcchHHHHHHHHHHHHHHHhhhhhccCCCCCCccHHHHHHHHHHHHHhhccccccchhhhhccccCCCCccCCCCchhhh
Confidence 56888887666655 4578999999999999985544443322211 0 0000
Q ss_pred -------CCCeeEEEEccCHHHHHHHHHHHHHhh
Q psy15524 464 -------KDGIYAVIILPTRELALQTLEIFTKLC 490 (930)
Q Consensus 464 -------~~~~~~lil~PtreLa~Q~~~~~~~~~ 490 (930)
..-+++.|-+-|..=..|+.+++++..
T Consensus 101 ~e~~~~~~~ipkIyyaSRTHsQltQvvrElrrT~ 134 (945)
T KOG1132|consen 101 GEPIACYTGIPKIYYASRTHSQLTQVVRELRRTG 134 (945)
T ss_pred cCccccccCCceEEEecchHHHHHHHHHHHhhcC
Confidence 123566777777777778888776643
|
|
| >KOG1132|consensus | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.01 Score=69.36 Aligned_cols=77 Identities=17% Similarity=0.134 Sum_probs=53.7
Q ss_pred cCcHHHHHHHHHhhc----CCcEEEEcCCCChHHHHHHHHHHHHHHhhCCc---------C-------CC----------
Q psy15524 5 QVTTVQQLSIQPILD----GGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPK---------I-------SR---------- 54 (930)
Q Consensus 5 ~l~~~Q~~ai~~~~~----g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~---------~-------~~---------- 54 (930)
+|++.|..-+..++. ..|.++..|||+|||++.+-..+......+.+ . ..
T Consensus 21 qpY~~Q~a~M~rvl~~L~~~q~~llESPTGTGKSLsLLCS~LAW~q~~k~~~~~~~~s~~~~~~~p~~~s~~~g~~s~e~ 100 (945)
T KOG1132|consen 21 QPYPTQLAFMTRVLSCLDRKQNGLLESPTGTGKSLSLLCSTLAWQQHLKSRKPKGKISERKAGFIPTQPSDSGGEKSEEA 100 (945)
T ss_pred CcchHHHHHHHHHHHHHHHhhhhhccCCCCCCccHHHHHHHHHHHHHhhccccccchhhhhccccCCCCccCCCCchhhh
Confidence 589999988877664 56899999999999999776666655433210 0 00
Q ss_pred -C------CCeEEEEEcccHHHHHHHHHHHHHHh
Q psy15524 55 -K------DGIYAVIILPTRELALQTLEIFTKLC 81 (930)
Q Consensus 55 -~------~~~~~lvl~P~~~L~~q~~~~~~~~~ 81 (930)
. .-+++.|-+-|..-..|+.+++++..
T Consensus 101 ~e~~~~~~~ipkIyyaSRTHsQltQvvrElrrT~ 134 (945)
T KOG1132|consen 101 GEPIACYTGIPKIYYASRTHSQLTQVVRELRRTG 134 (945)
T ss_pred cCccccccCCceEEEecchHHHHHHHHHHHhhcC
Confidence 0 12456677777877888888887764
|
|
| >KOG0392|consensus | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.018 Score=69.24 Aligned_cols=162 Identities=18% Similarity=0.175 Sum_probs=101.9
Q ss_pred cCcHHHHHHHHHh--hc--CCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHH
Q psy15524 5 QVTTVQQLSIQPI--LD--GGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKL 80 (930)
Q Consensus 5 ~l~~~Q~~ai~~~--~~--g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~ 80 (930)
.|+.+|++-+..+ ++ +-+-|+|---|-|||+-.+--+.......+.+...-...=.||+||. .|+--+..++.++
T Consensus 975 ~LRkYQqEGVnWLaFLnky~LHGILcDDMGLGKTLQticilAsd~y~r~s~~~e~~~~PSLIVCPs-TLtGHW~~E~~kf 1053 (1549)
T KOG0392|consen 975 KLRKYQQEGVNWLAFLNKYKLHGILCDDMGLGKTLQTICILASDHYKRRSESSEFNRLPSLIVCPS-TLTGHWKSEVKKF 1053 (1549)
T ss_pred HHHHHHHhccHHHHHHHHhcccceeeccccccHHHHHHHHHHHHHHhhcccchhhccCCeEEECCc-hhhhHHHHHHHHh
Confidence 4788999988764 32 34789999999999997543333333332222211112228999996 4777777777776
Q ss_pred hhhcCCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCcHHHHHHHHHH
Q psy15524 81 CKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEI 160 (930)
Q Consensus 81 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~~~~~~~i~~~ 160 (930)
+. ..++..+.|+.......+.-.++.+|+|++.+.+.+-... +.-....|+|+||-|-|-... ..+...+..
T Consensus 1054 ~p---fL~v~~yvg~p~~r~~lR~q~~~~~iiVtSYDv~RnD~d~---l~~~~wNYcVLDEGHVikN~k--tkl~kavkq 1125 (1549)
T KOG0392|consen 1054 FP---FLKVLQYVGPPAERRELRDQYKNANIIVTSYDVVRNDVDY---LIKIDWNYCVLDEGHVIKNSK--TKLTKAVKQ 1125 (1549)
T ss_pred cc---hhhhhhhcCChHHHHHHHhhccccceEEeeHHHHHHHHHH---HHhcccceEEecCcceecchH--HHHHHHHHH
Confidence 54 3666667777665555555556689999999887532211 112356799999999874322 223333444
Q ss_pred HhhcCCCceEEEEEeecCC
Q psy15524 161 LKKQKPQFQSILLSATLTP 179 (930)
Q Consensus 161 l~~~~~~~~~i~lSAT~~~ 179 (930)
++.. +.+-||.||-.
T Consensus 1126 L~a~----hRLILSGTPIQ 1140 (1549)
T KOG0392|consen 1126 LRAN----HRLILSGTPIQ 1140 (1549)
T ss_pred Hhhc----ceEEeeCCCcc
Confidence 4433 47889999953
|
|
| >PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.011 Score=55.10 Aligned_cols=18 Identities=28% Similarity=0.351 Sum_probs=12.6
Q ss_pred CCcEEEEccCCCchhHHh
Q psy15524 429 GGDVLVRSQTGSGKTLAY 446 (930)
Q Consensus 429 ~~d~lv~a~TGsGKTl~~ 446 (930)
++-+++.|++|+|||.+.
T Consensus 4 ~~~~~i~G~~G~GKT~~~ 21 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLI 21 (131)
T ss_dssp ---EEEEE-TTSSHHHHH
T ss_pred CcccEEEcCCCCCHHHHH
Confidence 345899999999999863
|
|
| >TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.34 Score=65.03 Aligned_cols=241 Identities=15% Similarity=0.202 Sum_probs=128.3
Q ss_pred CCCHHHHHhHHhhhcCCc--EEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHHHHhhc
Q psy15524 414 QVTTVQQLSIQPILDGGD--VLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCK 491 (930)
Q Consensus 414 ~~~~iQ~~~i~~il~~~d--~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~ 491 (930)
.+++-|.+++..++.+.+ .++.++.|+|||.+ +-.+++.+. ..|..+++++||-.-+.++.+.......
T Consensus 429 ~Ls~~Q~~Av~~il~s~~~v~ii~G~aGTGKTt~-l~~l~~~~~--------~~G~~V~~lAPTgrAA~~L~e~~g~~A~ 499 (1960)
T TIGR02760 429 ALSPSNKDAVSTLFTSTKRFIIINGFGGTGSTEI-AQLLLHLAS--------EQGYEIQIITAGSLSAQELRQKIPRLAS 499 (1960)
T ss_pred CCCHHHHHHHHHHHhCCCCeEEEEECCCCCHHHH-HHHHHHHHH--------hcCCeEEEEeCCHHHHHHHHHHhcchhh
Confidence 588999999999998755 88999999999975 445554443 2477899999998877666544221100
Q ss_pred cCCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhccCCcccccceEEEEecchhhhhcCcHHHHHHHHHHHh
Q psy15524 492 SFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILK 571 (930)
Q Consensus 492 ~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~l~~~g~~~~l~~i~~~l~ 571 (930)
........+..+ .-..|..+++ . ....+..-++||||||-++.. ..+..++....
T Consensus 500 --------------Ti~~~l~~l~~~--~~~~tv~~fl---~--~~~~l~~~~vlIVDEAsMl~~----~~~~~Ll~~a~ 554 (1960)
T TIGR02760 500 --------------TFITWVKNLFND--DQDHTVQGLL---D--KSSPFSNKDIFVVDEANKLSN----NELLKLIDKAE 554 (1960)
T ss_pred --------------hHHHHHHhhccc--ccchhHHHhh---c--ccCCCCCCCEEEEECCCCCCH----HHHHHHHHHHh
Confidence 000111111110 1112222222 1 222345678999999997753 33455555443
Q ss_pred hcCccceEEEEccc--cC-----HHHHHHHhhhcCCCEEEEccCCCCcccCccceecCCCceEEEEEcCchhhHHHHHHH
Q psy15524 572 KQKPQFQSILLSAT--LT-----PAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALASF 644 (930)
Q Consensus 572 ~~~~~~q~vl~SAT--~~-----~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 644 (930)
. .+.++|++--+ ++ +....+....+ +. +...... .. ...+ .........+...++..
T Consensus 555 ~--~garvVlvGD~~QL~sV~aG~~f~~L~~~gv--~t-~~l~~i~---rq------~~~v--~i~~~~~~~r~~~ia~~ 618 (1960)
T TIGR02760 555 Q--HNSKLILLNDSAQRQGMSAGSAIDLLKEGGV--TT-YAWVDTK---QQ------KASV--EISEAVDKLRVDYIASA 618 (1960)
T ss_pred h--cCCEEEEEcChhhcCccccchHHHHHHHCCC--cE-EEeeccc---cc------Ccce--eeeccCchHHHHHHHHH
Confidence 2 36788877544 22 22333333221 11 1111100 00 0011 11122233444444444
Q ss_pred HHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhc-------CCCceEEEecC-CCCHHHHHHHHHHhhcCC
Q psy15524 645 ILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVL-------GENIAFFKLHG-SMSQSERTEVFKTFRSVK 710 (930)
Q Consensus 645 l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~-------~~~~~~~~lhg-~~~~~~R~~v~~~F~~~~ 710 (930)
...... ...+++|+..+.+....+...++..+ .+++.+..|.. .|++.++... ..|+.|.
T Consensus 619 y~~L~~-----~r~~tliv~~t~~dr~~Ln~~iR~~L~~~G~L~~~~~~~~~L~p~~lt~~e~r~~-~~Yr~Gd 686 (1960)
T TIGR02760 619 WLDLTP-----DRQNSQVLATTHREQQDLTQIIRNALKQEGQLSRQEVTVPTLKPVNLTGIQRRNA-AHYKQGM 686 (1960)
T ss_pred HHhccc-----ccCceEEEcCCcHHHHHHHHHHHHHHHHcCCcCCCceEEEEeccCCCCHHHHhhH-hhcCCCC
Confidence 333211 25578999999998888888776655 12344444433 5777777643 6666553
|
This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein. |
| >PRK06526 transposase; Provisional | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.017 Score=60.35 Aligned_cols=25 Identities=24% Similarity=0.129 Sum_probs=19.1
Q ss_pred hcCCcEEEEccCCCchhHHhhHHHH
Q psy15524 427 LDGGDVLVRSQTGSGKTLAYAIPII 451 (930)
Q Consensus 427 l~~~d~lv~a~TGsGKTl~~~lp~l 451 (930)
-.+.++++.+|+|+|||..+..-..
T Consensus 96 ~~~~nlll~Gp~GtGKThLa~al~~ 120 (254)
T PRK06526 96 TGKENVVFLGPPGTGKTHLAIGLGI 120 (254)
T ss_pred hcCceEEEEeCCCCchHHHHHHHHH
Confidence 3568899999999999986444333
|
|
| >KOG1805|consensus | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.012 Score=69.43 Aligned_cols=140 Identities=19% Similarity=0.157 Sum_probs=85.6
Q ss_pred CCCHHHHHHHHhcCCCCCCCHHHHHhHHhhhcCCc-EEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccC
Q psy15524 397 GIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGD-VLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPT 475 (930)
Q Consensus 397 ~l~~~~~~~l~~~~~~~~~~~iQ~~~i~~il~~~d-~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt 475 (930)
.+.|.+.+. -+..++.-|++|+-.++..+| .++.+=+|+|||.+ +..++..|.. .|.++|..+=|
T Consensus 657 ~~~p~~~~~-----~~~~LN~dQr~A~~k~L~aedy~LI~GMPGTGKTTt-I~~LIkiL~~--------~gkkVLLtsyT 722 (1100)
T KOG1805|consen 657 VLIPKIKKI-----ILLRLNNDQRQALLKALAAEDYALILGMPGTGKTTT-ISLLIKILVA--------LGKKVLLTSYT 722 (1100)
T ss_pred ccCchhhHH-----HHhhcCHHHHHHHHHHHhccchheeecCCCCCchhh-HHHHHHHHHH--------cCCeEEEEehh
Confidence 355555553 234678899999999999888 88889999999987 3334444443 37789999988
Q ss_pred HHHHHHHHHHHHHhhccCCC----------cceEEEeCCCchH--HHHHHHhcCCcEEEECchhHHHhhhccCCcccccc
Q psy15524 476 RELALQTLEIFTKLCKSFTW----------IVPSWLTGGEKMK--SEKARIRKGISILVATPGRLLDHCKHTETLKFSKV 543 (930)
Q Consensus 476 reLa~Q~~~~~~~~~~~~~~----------~~~~~~~gg~~~~--~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l 543 (930)
..-+..+.-.++.....+-. +.-.+++.+.+.+ .......+...|+.||==-+. ...+..+.+
T Consensus 723 hsAVDNILiKL~~~~i~~lRLG~~~kih~~v~e~~~~~~~s~ks~~~l~~~~~~~~IVa~TClgi~-----~plf~~R~F 797 (1100)
T KOG1805|consen 723 HSAVDNILIKLKGFGIYILRLGSEEKIHPDVEEFTLTNETSEKSYADLKKFLDQTSIVACTCLGIN-----HPLFVNRQF 797 (1100)
T ss_pred hHHHHHHHHHHhccCcceeecCCccccchHHHHHhcccccchhhHHHHHHHhCCCcEEEEEccCCC-----chhhhcccc
Confidence 88777776666554322100 0000111122111 122233345778888832221 133445779
Q ss_pred eEEEEecchhhh
Q psy15524 544 EHLVLDEADRIL 555 (930)
Q Consensus 544 ~~lVlDEah~l~ 555 (930)
++.|+|||-.++
T Consensus 798 D~cIiDEASQI~ 809 (1100)
T KOG1805|consen 798 DYCIIDEASQIL 809 (1100)
T ss_pred CEEEEccccccc
Confidence 999999999875
|
|
| >TIGR01448 recD_rel helicase, putative, RecD/TraA family | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.023 Score=68.81 Aligned_cols=63 Identities=19% Similarity=0.202 Sum_probs=46.6
Q ss_pred cCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHH
Q psy15524 5 QVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTL 74 (930)
Q Consensus 5 ~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~ 74 (930)
.+++.|++|+..+..++-+++.++.|+|||.+. -.++..+.... +...+++++||-.-+..+.
T Consensus 323 ~l~~~Q~~Ai~~~~~~~~~iitGgpGTGKTt~l-~~i~~~~~~~~------~~~~v~l~ApTg~AA~~L~ 385 (720)
T TIGR01448 323 GLSEEQKQALDTAIQHKVVILTGGPGTGKTTIT-RAIIELAEELG------GLLPVGLAAPTGRAAKRLG 385 (720)
T ss_pred CCCHHHHHHHHHHHhCCeEEEECCCCCCHHHHH-HHHHHHHHHcC------CCceEEEEeCchHHHHHHH
Confidence 589999999999998888999999999999753 34444443311 1145888999988776443
|
This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD. |
| >TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.02 Score=69.52 Aligned_cols=61 Identities=11% Similarity=0.100 Sum_probs=45.9
Q ss_pred CCCHHHHHhHHhhhcC-CcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHH
Q psy15524 414 QVTTVQQLSIQPILDG-GDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTL 483 (930)
Q Consensus 414 ~~~~iQ~~~i~~il~~-~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~ 483 (930)
.+++-|..|+..++.+ +-+++.++.|+|||.. +-.+.+.+.. .|..+++++||--.|..+.
T Consensus 352 ~Ls~~Q~~Av~~i~~s~~~~il~G~aGTGKTtl-l~~i~~~~~~--------~g~~V~~~ApTg~Aa~~L~ 413 (744)
T TIGR02768 352 RLSEEQYEAVRHVTGSGDIAVVVGRAGTGKSTM-LKAAREAWEA--------AGYRVIGAALSGKAAEGLQ 413 (744)
T ss_pred CCCHHHHHHHHHHhcCCCEEEEEecCCCCHHHH-HHHHHHHHHh--------CCCeEEEEeCcHHHHHHHH
Confidence 5889999999999875 4478999999999975 3344444432 3678999999977665543
|
This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer. |
| >COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.0093 Score=62.96 Aligned_cols=66 Identities=24% Similarity=0.304 Sum_probs=49.8
Q ss_pred hcCCCCCCCHHHHHhHHhhhcCC-c-EEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHH
Q psy15524 408 EGMNITQVTTVQQLSIQPILDGG-D-VLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELA 479 (930)
Q Consensus 408 ~~~~~~~~~~iQ~~~i~~il~~~-d-~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa 479 (930)
+.+|+...+..|.-|+..++... + |.+.++.|||||+.++.+.++..... +.-.++||-=|+..+-
T Consensus 222 ~vwGi~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~------~~y~KiiVtRp~vpvG 289 (436)
T COG1875 222 EVWGIRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLER------KRYRKIIVTRPTVPVG 289 (436)
T ss_pred hhhccCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHH------hhhceEEEecCCcCcc
Confidence 34688888889999999998654 3 78899999999999999888877653 2234466666775554
|
|
| >KOG0921|consensus | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.027 Score=65.60 Aligned_cols=147 Identities=20% Similarity=0.239 Sum_probs=96.0
Q ss_pred hhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHH-hhhcCCceeEEeeCC
Q psy15524 17 ILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKL-CKSFTWIVPSWLTGG 95 (930)
Q Consensus 17 ~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~-~~~~~~~~~~~~~g~ 95 (930)
+....-+++-+.||+|||.-+.--+|+.+....... -..+.+--|++--+.-+.+++..- +...+... +
T Consensus 390 v~dn~v~~I~getgcgk~tq~aq~iLe~~~~ns~g~----~~na~v~qprrisaisiaerva~er~e~~g~tv------g 459 (1282)
T KOG0921|consen 390 VAENRVVIIKGETGCGKSTQVAQFLLESFLENSNGA----SFNAVVSQPRRISAISLAERVANERGEEVGETC------G 459 (1282)
T ss_pred HhcCceeeEeecccccchhHHHHHHHHHHhhccccc----cccceeccccccchHHHHHHHHHhhHHhhcccc------c
Confidence 334455899999999999999888888887643322 223666679988888887765443 22222111 1
Q ss_pred CchHHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCcHHHHHHHHHHHhhcCCCceEEEEEe
Q psy15524 96 EKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSA 175 (930)
Q Consensus 96 ~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~~~~~~~i~~~l~~~~~~~~~i~lSA 175 (930)
.+.......-+.---|+.||-+-+++.+.+ -+..+.++++||.|.---.+ .-+..+++-+....++.+++++||
T Consensus 460 y~vRf~Sa~prpyg~i~fctvgvllr~~e~----glrg~sh~i~deiherdv~~--dfll~~lr~m~~ty~dl~v~lmsa 533 (1282)
T KOG0921|consen 460 YNVRFDSATPRPYGSIMFCTVGVLLRMMEN----GLRGISHVIIDEIHERDVDT--DFVLIVLREMISTYRDLRVVLMSA 533 (1282)
T ss_pred ccccccccccccccceeeeccchhhhhhhh----cccccccccchhhhhhccch--HHHHHHHHhhhccchhhhhhhhhc
Confidence 111111111111125999999999988875 36788999999999643222 234556666677788899999999
Q ss_pred ecCC
Q psy15524 176 TLTP 179 (930)
Q Consensus 176 T~~~ 179 (930)
|+.-
T Consensus 534 tIdT 537 (1282)
T KOG0921|consen 534 TIDT 537 (1282)
T ss_pred ccch
Confidence 9964
|
|
| >COG3421 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.0044 Score=68.91 Aligned_cols=147 Identities=18% Similarity=0.184 Sum_probs=74.6
Q ss_pred EEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHHHHhhccCCCcceEEEeCCCchHHHH--
Q psy15524 434 VRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEK-- 511 (930)
Q Consensus 434 v~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~-- 511 (930)
..++||||||++..-.|++.... + -..-|+.|...........-+..-...--........+|+...-..
T Consensus 2 f~matgsgkt~~ma~lil~~y~k-------g-yr~flffvnq~nilekt~~nftd~~s~kylf~e~i~~~d~~i~ikkvn 73 (812)
T COG3421 2 FEMATGSGKTLVMAGLILECYKK-------G-YRNFLFFVNQANILEKTKLNFTDSVSSKYLFSENININDENIEIKKVN 73 (812)
T ss_pred cccccCCChhhHHHHHHHHHHHh-------c-hhhEEEEecchhHHHHHHhhcccchhhhHhhhhhhhcCCceeeeeeec
Confidence 46899999999977777766543 1 1224555555444443333222111100000111223333211100
Q ss_pred --HHHhcCCcEEEECchhHHHhhhccCC--c---ccccceE-EEEecchhhhhcC---------cHHHHHHHHHHHhhcC
Q psy15524 512 --ARIRKGISILVATPGRLLDHCKHTET--L---KFSKVEH-LVLDEADRILDQG---------YERDIAEFLEILKKQK 574 (930)
Q Consensus 512 --~~~~~~~~Ilv~Tp~rl~~~l~~~~~--~---~~~~l~~-lVlDEah~l~~~g---------~~~~l~~i~~~l~~~~ 574 (930)
..-..+..|.++|...|...+.+.+. + .+.+..+ ++-||||++.... -...++..+.......
T Consensus 74 ~fsehnd~iei~fttiq~l~~d~~~~ken~itledl~~~klvfl~deahhln~~tkkk~~de~~~~~~we~~v~la~~~n 153 (812)
T COG3421 74 NFSEHNDAIEIYFTTIQGLFSDFTRAKENAITLEDLKDQKLVFLADEAHHLNTETKKKLNDEASEKRNWESVVKLALEQN 153 (812)
T ss_pred ccCccCCceEEEEeehHHHHHHHHhhccccccHhhHhhCceEEEechhhhhhhhhhhhcccHHHHHhhHHHHHHHHHhcC
Confidence 01234678999999998766655432 2 2444444 5679999986322 1112222222222233
Q ss_pred ccceEEEEccccCH
Q psy15524 575 PQFQSILLSATLTP 588 (930)
Q Consensus 575 ~~~q~vl~SAT~~~ 588 (930)
++--++.+|||.+.
T Consensus 154 kd~~~lef~at~~k 167 (812)
T COG3421 154 KDNLLLEFSATIPK 167 (812)
T ss_pred CCceeehhhhcCCc
Confidence 45557789999984
|
|
| >KOG1805|consensus | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.018 Score=67.94 Aligned_cols=130 Identities=18% Similarity=0.145 Sum_probs=80.6
Q ss_pred ccCcHHHHHHHHHhhcCCc-EEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHHhh
Q psy15524 4 TQVTTVQQLSIQPILDGGD-VLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCK 82 (930)
Q Consensus 4 ~~l~~~Q~~ai~~~~~g~~-~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~ 82 (930)
..|+.-|++|+..+++-+| .||.+=+|+|||......+ ..+.. .|.++|+.+-|..=+..+.-.++....
T Consensus 668 ~~LN~dQr~A~~k~L~aedy~LI~GMPGTGKTTtI~~LI-kiL~~--------~gkkVLLtsyThsAVDNILiKL~~~~i 738 (1100)
T KOG1805|consen 668 LRLNNDQRQALLKALAAEDYALILGMPGTGKTTTISLLI-KILVA--------LGKKVLLTSYTHSAVDNILIKLKGFGI 738 (1100)
T ss_pred hhcCHHHHHHHHHHHhccchheeecCCCCCchhhHHHHH-HHHHH--------cCCeEEEEehhhHHHHHHHHHHhccCc
Confidence 3688999999999887666 7888889999998644433 33332 255699999998888777777766643
Q ss_pred hcCC----------ceeEEeeCCC--chHHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccc
Q psy15524 83 SFTW----------IVPSWLTGGE--KMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILD 147 (930)
Q Consensus 83 ~~~~----------~~~~~~~g~~--~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~ 147 (930)
.+-. +.-.+...+. ..........+.+.|+.+|=-.+.+ ..+..+++++.|||||-.++.
T Consensus 739 ~~lRLG~~~kih~~v~e~~~~~~~s~ks~~~l~~~~~~~~IVa~TClgi~~-----plf~~R~FD~cIiDEASQI~l 810 (1100)
T KOG1805|consen 739 YILRLGSEEKIHPDVEEFTLTNETSEKSYADLKKFLDQTSIVACTCLGINH-----PLFVNRQFDYCIIDEASQILL 810 (1100)
T ss_pred ceeecCCccccchHHHHHhcccccchhhHHHHHHHhCCCcEEEEEccCCCc-----hhhhccccCEEEEcccccccc
Confidence 2110 0000001111 1112222334557788888322221 334467899999999987753
|
|
| >PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.015 Score=64.75 Aligned_cols=59 Identities=20% Similarity=0.318 Sum_probs=43.2
Q ss_pred CCHHHHHhHHhh------hcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHH
Q psy15524 415 VTTVQQLSIQPI------LDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQT 482 (930)
Q Consensus 415 ~~~iQ~~~i~~i------l~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~ 482 (930)
+++-|++++..+ .++..+++.++-|+|||.. +-.+..... ..+..+++++||---|..+
T Consensus 2 Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l--~~~i~~~~~-------~~~~~~~~~a~tg~AA~~i 66 (364)
T PF05970_consen 2 LNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFL--IKAIIDYLR-------SRGKKVLVTAPTGIAAFNI 66 (364)
T ss_pred CCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhHH--HHHHHHHhc-------cccceEEEecchHHHHHhc
Confidence 567788888877 5677899999999999974 333333322 3467899999997776554
|
The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ]. |
| >PHA02533 17 large terminase protein; Provisional | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.051 Score=62.99 Aligned_cols=151 Identities=11% Similarity=0.067 Sum_probs=89.5
Q ss_pred cCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHHhhhc
Q psy15524 5 QVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSF 84 (930)
Q Consensus 5 ~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~ 84 (930)
.|.|+|+..+..+..++-.++..+-..|||.+....++..... .++..+++++|+.+-+..+++.++.+....
T Consensus 59 ~L~p~Q~~i~~~~~~~R~~ii~~aRq~GKStl~a~~al~~a~~-------~~~~~v~i~A~~~~QA~~vF~~ik~~ie~~ 131 (534)
T PHA02533 59 QMRDYQKDMLKIMHKNRFNACNLSRQLGKTTVVAIFLLHYVCF-------NKDKNVGILAHKASMAAEVLDRTKQAIELL 131 (534)
T ss_pred CCcHHHHHHHHHHhcCeEEEEEEcCcCChHHHHHHHHHHHHHh-------CCCCEEEEEeCCHHHHHHHHHHHHHHHHhC
Confidence 4789999999887666667888999999999877655544432 224579999999999999999998776654
Q ss_pred CCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCcHHHHHHHHHHHhhc
Q psy15524 85 TWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQ 164 (930)
Q Consensus 85 ~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~~~~~~~i~~~l~~~ 164 (930)
+.......... ....-.+.++..|.+.|. +.....-.+..++++||+|.+.+ +...+..+...+..
T Consensus 132 P~l~~~~i~~~---~~~~I~l~NGS~I~~lss--------~~~t~rG~~~~~liiDE~a~~~~--~~e~~~ai~p~las- 197 (534)
T PHA02533 132 PDFLQPGIVEW---NKGSIELENGSKIGAYAS--------SPDAVRGNSFAMIYIDECAFIPN--FIDFWLAIQPVISS- 197 (534)
T ss_pred HHHhhcceeec---CccEEEeCCCCEEEEEeC--------CCCccCCCCCceEEEeccccCCC--HHHHHHHHHHHHHc-
Confidence 42211000000 000011234455555442 11222334577899999997644 22333334444433
Q ss_pred CCCceEEEEEee
Q psy15524 165 KPQFQSILLSAT 176 (930)
Q Consensus 165 ~~~~~~i~lSAT 176 (930)
....+++..|..
T Consensus 198 g~~~r~iiiSTp 209 (534)
T PHA02533 198 GRSSKIIITSTP 209 (534)
T ss_pred CCCceEEEEECC
Confidence 222345444444
|
|
| >KOG0386|consensus | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.0064 Score=71.65 Aligned_cols=157 Identities=19% Similarity=0.254 Sum_probs=98.4
Q ss_pred cCcHHHHHHHHHhhc----CCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHH
Q psy15524 5 QVTTVQQLSIQPILD----GGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKL 80 (930)
Q Consensus 5 ~l~~~Q~~ai~~~~~----g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~ 80 (930)
++.++|..-+..+.+ +-|-++.-.+|-|||..- +..+..+...+. ..|+ -||++|+--|.+ +..+|..|
T Consensus 394 ~Lk~YQl~GLqWmVSLyNNnLNGILADEMGLGKTIQt-IsLitYLmE~K~----~~GP-~LvivPlstL~N-W~~Ef~kW 466 (1157)
T KOG0386|consen 394 ELKEYQLHGLQWMVSLYNNNLNGILADEMGLGKTIQT-ISLITYLMEHKQ----MQGP-FLIIVPLSTLVN-WSSEFPKW 466 (1157)
T ss_pred CCchhhhhhhHHHhhccCCCcccccchhcccchHHHH-HHHHHHHHHHcc----cCCC-eEEeccccccCC-chhhcccc
Confidence 688999988877542 347899999999999864 444445554332 2234 699999988876 34455555
Q ss_pred hhhcCCceeEEeeCCCchH--HHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCcHHHHHHHH
Q psy15524 81 CKSFTWIVPSWLTGGEKMK--SEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFL 158 (930)
Q Consensus 81 ~~~~~~~~~~~~~g~~~~~--~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~~~~~~~i~ 158 (930)
.. .+....+.|..... -......+..+||++|.+-+.. ....+.--+..++||||.|+|-. ..-.+-
T Consensus 467 aP---Sv~~i~YkGtp~~R~~l~~qir~gKFnVLlTtyEyiik---dk~lLsKI~W~yMIIDEGHRmKN-----a~~KLt 535 (1157)
T KOG0386|consen 467 AP---SVQKIQYKGTPQQRSGLTKQQRHGKFNVLLTTYEYIIK---DKALLSKISWKYMIIDEGHRMKN-----AICKLT 535 (1157)
T ss_pred cc---ceeeeeeeCCHHHHhhHHHHHhcccceeeeeeHHHhcC---CHHHHhccCCcceeecccccccc-----hhhHHH
Confidence 43 24444444443221 1122334568999999987754 11222223457899999999853 223444
Q ss_pred HHHhhcCCCceEEEEEeecCC
Q psy15524 159 EILKKQKPQFQSILLSATLTP 179 (930)
Q Consensus 159 ~~l~~~~~~~~~i~lSAT~~~ 179 (930)
..+.......+.+++|.||..
T Consensus 536 ~~L~t~y~~q~RLLLTGTPLQ 556 (1157)
T KOG0386|consen 536 DTLNTHYRAQRRLLLTGTPLQ 556 (1157)
T ss_pred HHhhccccchhhhhhcCChhh
Confidence 445445556678999999964
|
|
| >KOG0384|consensus | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.033 Score=67.36 Aligned_cols=156 Identities=17% Similarity=0.214 Sum_probs=97.0
Q ss_pred ccCcHHHHHHHHHhh----cCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHH
Q psy15524 4 TQVTTVQQLSIQPIL----DGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTK 79 (930)
Q Consensus 4 ~~l~~~Q~~ai~~~~----~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~ 79 (930)
.+|+.+|-+-+..++ .+.|+|+.-.-|-|||+- .+..|..+.... ...|+ .||++|.--+. .+.+.|..
T Consensus 369 ~~LRdyQLeGlNWl~~~W~~~~n~ILADEmgLgktvq-ti~fl~~l~~~~----~~~gp-flvvvplst~~-~W~~ef~~ 441 (1373)
T KOG0384|consen 369 NELRDYQLEGLNWLLYSWYKRNNCILADEMGLGKTVQ-TITFLSYLFHSL----QIHGP-FLVVVPLSTIT-AWEREFET 441 (1373)
T ss_pred chhhhhhcccchhHHHHHHhcccceehhhcCCCcchH-HHHHHHHHHHhh----hccCC-eEEEeehhhhH-HHHHHHHH
Confidence 578999999887654 688999999999999975 223333332211 01233 68888876544 35566777
Q ss_pred HhhhcCCceeEEeeCCCchHHHHHHh----cC-----CCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCc
Q psy15524 80 LCKSFTWIVPSWLTGGEKMKSEKARI----RK-----GISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGY 150 (930)
Q Consensus 80 ~~~~~~~~~~~~~~g~~~~~~~~~~l----~~-----~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~ 150 (930)
+. . +++.++.|........+.. .. .++++++|.+.++.-... +.--...+++|||||++-...
T Consensus 442 w~-~---mn~i~y~g~~~sr~~i~~ye~~~~~~~~~lkf~~lltTye~~LkDk~~---L~~i~w~~~~vDeahrLkN~~- 513 (1373)
T KOG0384|consen 442 WT-D---MNVIVYHGNLESRQLIRQYEFYHSSNTKKLKFNALLTTYEIVLKDKAE---LSKIPWRYLLVDEAHRLKNDE- 513 (1373)
T ss_pred Hh-h---hceeeeecchhHHHHHHHHHheecCCccccccceeehhhHHHhccHhh---hccCCcceeeecHHhhcCchH-
Confidence 75 2 6677777776544333322 12 378999999988653221 122345789999999985321
Q ss_pred HHHHHHHHHHHhhcCCCceEEEEEeecCC
Q psy15524 151 ERDIAEFLEILKKQKPQFQSILLSATLTP 179 (930)
Q Consensus 151 ~~~~~~i~~~l~~~~~~~~~i~lSAT~~~ 179 (930)
..+...+..+... ..+++|.||-.
T Consensus 514 -~~l~~~l~~f~~~----~rllitgTPlQ 537 (1373)
T KOG0384|consen 514 -SKLYESLNQFKMN----HRLLITGTPLQ 537 (1373)
T ss_pred -HHHHHHHHHhccc----ceeeecCCCcc
Confidence 1222223333222 47899999964
|
|
| >COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.0049 Score=67.81 Aligned_cols=115 Identities=18% Similarity=0.283 Sum_probs=73.4
Q ss_pred CCeeEEEEccCHHHHHHHHHHHHHhhccCCCcceEEEeCCCch---HHHHHHHhcC-CcEEEECchhHHHhhhccCCccc
Q psy15524 465 DGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKM---KSEKARIRKG-ISILVATPGRLLDHCKHTETLKF 540 (930)
Q Consensus 465 ~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~---~~~~~~~~~~-~~Ilv~Tp~rl~~~l~~~~~~~~ 540 (930)
.+.++||.+=|+-+|.+..+-+...+ +.+.++..+.+. ..-.+.++.| .+++|+- ++|+ ..+++
T Consensus 445 ~~eRvLVTtLTKkmAEdLT~Yl~e~g-----ikv~YlHSdidTlER~eIirdLR~G~~DvLVGI-----NLLR--EGLDi 512 (663)
T COG0556 445 KNERVLVTTLTKKMAEDLTEYLKELG-----IKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGI-----NLLR--EGLDL 512 (663)
T ss_pred cCCeEEEEeehHHHHHHHHHHHHhcC-----ceEEeeeccchHHHHHHHHHHHhcCCccEEEee-----hhhh--ccCCC
Confidence 46889999999999988888777755 345566665443 2234445544 8999997 3555 46778
Q ss_pred ccceEEEEecchhhhhcCcHHHHHHHHHHHhhc--CccceEEEEccccCHHHHHHH
Q psy15524 541 SKVEHLVLDEADRILDQGYERDIAEFLEILKKQ--KPQFQSILLSATLTPAVQRLA 594 (930)
Q Consensus 541 ~~l~~lVlDEah~l~~~g~~~~l~~i~~~l~~~--~~~~q~vl~SAT~~~~~~~l~ 594 (930)
..++++.|=.|| ..||-..-..++..+... +.+-++++..-.+++.++...
T Consensus 513 PEVsLVAIlDAD---KeGFLRse~SLIQtIGRAARN~~GkvIlYAD~iT~sM~~Ai 565 (663)
T COG0556 513 PEVSLVAILDAD---KEGFLRSERSLIQTIGRAARNVNGKVILYADKITDSMQKAI 565 (663)
T ss_pred cceeEEEEeecC---ccccccccchHHHHHHHHhhccCCeEEEEchhhhHHHHHHH
Confidence 889998888898 566654444444444321 224456666666666554433
|
|
| >PRK08181 transposase; Validated | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.054 Score=56.97 Aligned_cols=36 Identities=25% Similarity=0.303 Sum_probs=26.2
Q ss_pred CcHHHHHHHH----HhhcCCcEEEEcCCCChHHHHHHHHH
Q psy15524 6 VTTVQQLSIQ----PILDGGDVLVRSQTGSGKTLAYAIPI 41 (930)
Q Consensus 6 l~~~Q~~ai~----~~~~g~~~lv~apTGsGKT~~~~l~~ 41 (930)
+...|..++. .+..+.+++++||+|+|||......+
T Consensus 88 ~~~~~~~~L~~~~~~~~~~~nlll~Gp~GtGKTHLa~Aia 127 (269)
T PRK08181 88 VSKAQVMAIAAGDSWLAKGANLLLFGPPGGGKSHLAAAIG 127 (269)
T ss_pred CCHHHHHHHHHHHHHHhcCceEEEEecCCCcHHHHHHHHH
Confidence 4566776663 23467899999999999998655443
|
|
| >PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.014 Score=54.27 Aligned_cols=24 Identities=21% Similarity=0.156 Sum_probs=15.0
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHH
Q psy15524 19 DGGDVLVRSQTGSGKTLAYAIPII 42 (930)
Q Consensus 19 ~g~~~lv~apTGsGKT~~~~l~~l 42 (930)
.++.+++.||+|+|||.+...-+-
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~ 26 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLAR 26 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHH
Confidence 345789999999999987544443
|
|
| >PHA02533 17 large terminase protein; Provisional | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.04 Score=63.88 Aligned_cols=151 Identities=11% Similarity=0.069 Sum_probs=89.5
Q ss_pred CCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHHHHhhccC
Q psy15524 414 QVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSF 493 (930)
Q Consensus 414 ~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~ 493 (930)
.|.|+|...+..+..++-.++..+=..|||.+...-++..+.. .++..+++++|+++-|..+++.++......
T Consensus 59 ~L~p~Q~~i~~~~~~~R~~ii~~aRq~GKStl~a~~al~~a~~-------~~~~~v~i~A~~~~QA~~vF~~ik~~ie~~ 131 (534)
T PHA02533 59 QMRDYQKDMLKIMHKNRFNACNLSRQLGKTTVVAIFLLHYVCF-------NKDKNVGILAHKASMAAEVLDRTKQAIELL 131 (534)
T ss_pred CCcHHHHHHHHHHhcCeEEEEEEcCcCChHHHHHHHHHHHHHh-------CCCCEEEEEeCCHHHHHHHHHHHHHHHHhC
Confidence 4789999998887666667888889999999876544433332 235689999999999999998888766544
Q ss_pred CCcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhccCCcccccceEEEEecchhhhhcCcHHHHHHHHHHHhhc
Q psy15524 494 TWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQ 573 (930)
Q Consensus 494 ~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~l~~~g~~~~l~~i~~~l~~~ 573 (930)
+......+... ....-.+..|+.|.+.|-+ .....-.+..++|+||+|.+.+ +.+.+..+...+...
T Consensus 132 P~l~~~~i~~~---~~~~I~l~NGS~I~~lss~--------~~t~rG~~~~~liiDE~a~~~~--~~e~~~ai~p~lasg 198 (534)
T PHA02533 132 PDFLQPGIVEW---NKGSIELENGSKIGAYASS--------PDAVRGNSFAMIYIDECAFIPN--FIDFWLAIQPVISSG 198 (534)
T ss_pred HHHhhcceeec---CccEEEeCCCCEEEEEeCC--------CCccCCCCCceEEEeccccCCC--HHHHHHHHHHHHHcC
Confidence 32111000000 0000111344555444421 1122234577899999997643 334445555555432
Q ss_pred CccceEEEEccc
Q psy15524 574 KPQFQSILLSAT 585 (930)
Q Consensus 574 ~~~~q~vl~SAT 585 (930)
...+++.+|..
T Consensus 199 -~~~r~iiiSTp 209 (534)
T PHA02533 199 -RSSKIIITSTP 209 (534)
T ss_pred -CCceEEEEECC
Confidence 12355555555
|
|
| >KOG0989|consensus | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.033 Score=57.62 Aligned_cols=47 Identities=17% Similarity=0.249 Sum_probs=30.7
Q ss_pred cccccceEEEEecchhhhhcCcHHHHHHHHHHHhhcCccceEEEEccccCH
Q psy15524 538 LKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTP 588 (930)
Q Consensus 538 ~~~~~l~~lVlDEah~l~~~g~~~~l~~i~~~l~~~~~~~q~vl~SAT~~~ 588 (930)
.....+..+|+||||.|.... ...+.+.+.+.....++++...-+..
T Consensus 125 ~~~~~fKiiIlDEcdsmtsda----q~aLrr~mE~~s~~trFiLIcnylsr 171 (346)
T KOG0989|consen 125 YPCPPFKIIILDECDSMTSDA----QAALRRTMEDFSRTTRFILICNYLSR 171 (346)
T ss_pred CCCCcceEEEEechhhhhHHH----HHHHHHHHhccccceEEEEEcCChhh
Confidence 345678999999999886443 23344444444446778887766543
|
|
| >KOG0388|consensus | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.016 Score=65.56 Aligned_cols=157 Identities=15% Similarity=0.197 Sum_probs=97.1
Q ss_pred cCcHHHHHHHHHhh----cCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHH
Q psy15524 5 QVTTVQQLSIQPIL----DGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKL 80 (930)
Q Consensus 5 ~l~~~Q~~ai~~~~----~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~ 80 (930)
+|.++|.+-+..+. .|-|-|+.-.-|-|||.- .+.++.++.....- -|+ -||++|.--| ..+.+++
T Consensus 567 tLKEYQlkGLnWLvnlYdqGiNGILADeMGLGKTVQ-sisvlAhLaE~~nI----wGP-FLVVtpaStL----~NWaqEi 636 (1185)
T KOG0388|consen 567 TLKEYQLKGLNWLVNLYDQGINGILADEMGLGKTVQ-SISVLAHLAETHNI----WGP-FLVVTPASTL----HNWAQEI 636 (1185)
T ss_pred hhHHHhhccHHHHHHHHHccccceehhhhccchhHH-HHHHHHHHHHhccC----CCc-eEEeehHHHH----hHHHHHH
Confidence 45678887776654 588999999999999986 45555666653221 133 6788886554 3344445
Q ss_pred hhhcCCceeEEeeCCCchHHHHHHh---------cCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCcH
Q psy15524 81 CKSFTWIVPSWLTGGEKMKSEKARI---------RKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYE 151 (930)
Q Consensus 81 ~~~~~~~~~~~~~g~~~~~~~~~~l---------~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~~ 151 (930)
...++.+++.-++|+.......+.. ..+.||+|+|.+.++.-- ..+.--...|+|+|||..+-...-
T Consensus 637 srFlP~~k~lpywGs~~eRkiLrKfw~rKnmY~rna~fhVviTSYQlvVtDe---ky~qkvKWQYMILDEAQAIKSSsS- 712 (1185)
T KOG0388|consen 637 SRFLPSFKVLPYWGSPSERKILRKFWNRKNMYRRNAPFHVVITSYQLVVTDE---KYLQKVKWQYMILDEAQAIKSSSS- 712 (1185)
T ss_pred HHhCccceeecCcCChhhhHHHHHhcchhhhhccCCCceEEEEeeeeeechH---HHHHhhhhhheehhHHHHhhhhhh-
Confidence 5556677888888887765554442 234789999986653211 111112346899999998854432
Q ss_pred HHHHHHHHHHhhcCCCceEEEEEeecCCC
Q psy15524 152 RDIAEFLEILKKQKPQFQSILLSATLTPA 180 (930)
Q Consensus 152 ~~~~~i~~~l~~~~~~~~~i~lSAT~~~~ 180 (930)
..+..++.. .+. ..++||.||-.-
T Consensus 713 ~RWKtLLsF---~cR--NRLLLTGTPIQN 736 (1185)
T KOG0388|consen 713 SRWKTLLSF---KCR--NRLLLTGTPIQN 736 (1185)
T ss_pred hHHHHHhhh---hcc--ceeeecCCccch
Confidence 222333322 221 368999999643
|
|
| >smart00492 HELICc3 helicase superfamily c-terminal domain | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.038 Score=51.93 Aligned_cols=74 Identities=15% Similarity=0.209 Sum_probs=52.3
Q ss_pred cCCCCHHHHHHHHHHhhcCC-CcEEEeccccccccCCCCc--cEEEEecCCCC---------------------------
Q psy15524 691 HGSMSQSERTEVFKTFRSVK-SGVLICTDVAARGLDLPLV--DWIVQYTAPSS--------------------------- 740 (930)
Q Consensus 691 hg~~~~~~R~~v~~~F~~~~-~~vLv~T~~~~~GlDip~v--~~VI~~~~p~s--------------------------- 740 (930)
.-+....+...+++.|++.. ..||++|.-+++|+|+|+- +.||....|..
T Consensus 28 ~e~~~~~~~~~~l~~f~~~~~~~iL~~~~~~~EGiD~~g~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~ 107 (141)
T smart00492 28 VQGEDGKETGKLLEKYVEACENAILLATARFSEGVDFPGDYLRAVIIDGLPFPYPDSPILKARLELLRDKGQIRPFDFVS 107 (141)
T ss_pred EeCCChhHHHHHHHHHHHcCCCEEEEEccceecceecCCCCeeEEEEEecCCCCCCCHHHHHHHHHHHHhCCCCchhHHH
Confidence 33455556788999998764 3799999889999999874 57887776631
Q ss_pred ----hhhHHhhhcccccCCCCceEEEEe
Q psy15524 741 ----STDYVHRVGRTARVGHEGSSLLFL 764 (930)
Q Consensus 741 ----~~~y~qr~GRagR~g~~g~~~~~~ 764 (930)
.....|-+||.-|...+-.+++++
T Consensus 108 ~~~a~~~l~Qa~GR~iR~~~D~g~i~l~ 135 (141)
T smart00492 108 LPDAMRTLAQCVGRLIRGANDYGVVVIA 135 (141)
T ss_pred HHHHHHHHHHHhCccccCcCceEEEEEE
Confidence 123457888988877664444444
|
|
| >PRK13889 conjugal transfer relaxase TraA; Provisional | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.054 Score=66.87 Aligned_cols=60 Identities=17% Similarity=0.073 Sum_probs=45.7
Q ss_pred cCcHHHHHHHHHhhcCCc-EEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHH
Q psy15524 5 QVTTVQQLSIQPILDGGD-VLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQT 73 (930)
Q Consensus 5 ~l~~~Q~~ai~~~~~g~~-~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~ 73 (930)
.|++-|++|+..++.+.+ +++.++.|+|||.+ +-.+...+.. .|.+++.++||-.-+..+
T Consensus 346 ~Ls~eQr~Av~~il~s~~v~vv~G~AGTGKTT~-l~~~~~~~e~--------~G~~V~~~ApTGkAA~~L 406 (988)
T PRK13889 346 VLSGEQADALAHVTDGRDLGVVVGYAGTGKSAM-LGVAREAWEA--------AGYEVRGAALSGIAAENL 406 (988)
T ss_pred CCCHHHHHHHHHHhcCCCeEEEEeCCCCCHHHH-HHHHHHHHHH--------cCCeEEEecCcHHHHHHH
Confidence 589999999999998665 78999999999985 4444444432 256699999998766544
|
|
| >PRK04296 thymidine kinase; Provisional | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.012 Score=58.87 Aligned_cols=35 Identities=17% Similarity=0.248 Sum_probs=23.7
Q ss_pred cEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEcc
Q psy15524 431 DVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILP 474 (930)
Q Consensus 431 d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~P 474 (930)
=.++.+|+|+|||...+- .+.++.. .+.+++++-|
T Consensus 4 i~litG~~GsGKTT~~l~-~~~~~~~--------~g~~v~i~k~ 38 (190)
T PRK04296 4 LEFIYGAMNSGKSTELLQ-RAYNYEE--------RGMKVLVFKP 38 (190)
T ss_pred EEEEECCCCCHHHHHHHH-HHHHHHH--------cCCeEEEEec
Confidence 367899999999976443 3333322 3667888876
|
|
| >PRK13826 Dtr system oriT relaxase; Provisional | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.14 Score=63.81 Aligned_cols=62 Identities=16% Similarity=0.086 Sum_probs=46.9
Q ss_pred CCCCHHHHHhHHhhhcCC-cEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHH
Q psy15524 413 TQVTTVQQLSIQPILDGG-DVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTL 483 (930)
Q Consensus 413 ~~~~~iQ~~~i~~il~~~-d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~ 483 (930)
..+++-|.+++..+..+. =+++.++.|+|||.+ +-++.+.+.. .|..++.++||---|..+.
T Consensus 380 ~~Ls~eQ~~Av~~i~~~~r~~~v~G~AGTGKTt~-l~~~~~~~e~--------~G~~V~g~ApTgkAA~~L~ 442 (1102)
T PRK13826 380 ARLSDEQKTAIEHVAGPARIAAVVGRAGAGKTTM-MKAAREAWEA--------AGYRVVGGALAGKAAEGLE 442 (1102)
T ss_pred CCCCHHHHHHHHHHhccCCeEEEEeCCCCCHHHH-HHHHHHHHHH--------cCCeEEEEcCcHHHHHHHH
Confidence 468999999999886543 388999999999975 4455554433 4778999999977765543
|
|
| >cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.057 Score=50.99 Aligned_cols=18 Identities=28% Similarity=0.396 Sum_probs=15.6
Q ss_pred CCcEEEEcCCCChHHHHH
Q psy15524 20 GGDVLVRSQTGSGKTLAY 37 (930)
Q Consensus 20 g~~~lv~apTGsGKT~~~ 37 (930)
+..+++.||+|+|||...
T Consensus 19 ~~~v~i~G~~G~GKT~l~ 36 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLA 36 (151)
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 678999999999999743
|
The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases. |
| >PRK08181 transposase; Validated | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.18 Score=53.08 Aligned_cols=45 Identities=27% Similarity=0.345 Sum_probs=28.0
Q ss_pred cCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHH
Q psy15524 428 DGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQT 482 (930)
Q Consensus 428 ~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~ 482 (930)
.++++++.+|+|+|||-... .+...+.. .|..++++. ..+|..++
T Consensus 105 ~~~nlll~Gp~GtGKTHLa~-Aia~~a~~--------~g~~v~f~~-~~~L~~~l 149 (269)
T PRK08181 105 KGANLLLFGPPGGGKSHLAA-AIGLALIE--------NGWRVLFTR-TTDLVQKL 149 (269)
T ss_pred cCceEEEEecCCCcHHHHHH-HHHHHHHH--------cCCceeeee-HHHHHHHH
Confidence 57889999999999996533 33333322 245555554 45666554
|
|
| >PRK12723 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.11 Score=57.55 Aligned_cols=132 Identities=15% Similarity=0.097 Sum_probs=68.9
Q ss_pred CCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEc--cCHHHHHHHHHHHHHhhccCCCcceEEEeCCCc
Q psy15524 429 GGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIIL--PTRELALQTLEIFTKLCKSFTWIVPSWLTGGEK 506 (930)
Q Consensus 429 ~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~--PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~ 506 (930)
++.+++.+|||+|||.+..--+....... ...|.++.+++ +.|.-+..+...+.+.. +.-+
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~-----~~~g~~V~lit~Dt~R~aa~eQL~~~a~~l---gvpv--------- 236 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINS-----DDKSLNIKIITIDNYRIGAKKQIQTYGDIM---GIPV--------- 236 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhh-----ccCCCeEEEEeccCccHHHHHHHHHHhhcC---Ccce---------
Confidence 35688999999999987543332221110 01234444444 44555554444433322 1100
Q ss_pred hHHHHHHHhcCCcEEEECchhHHHhhhccCCcccccceEEEEecchhhhhcCcHHHHHHHHHHHhhcCcc-ceEEEEccc
Q psy15524 507 MKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQ-FQSILLSAT 585 (930)
Q Consensus 507 ~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~l~~~g~~~~l~~i~~~l~~~~~~-~q~vl~SAT 585 (930)
..+.++..+...+.. +.+.++|++|++.+.... ...+..+.+.+....+. -..+.+|||
T Consensus 237 -------------~~~~~~~~l~~~L~~-----~~~~DlVLIDTaGr~~~~--~~~l~el~~~l~~~~~~~e~~LVlsat 296 (388)
T PRK12723 237 -------------KAIESFKDLKEEITQ-----SKDFDLVLVDTIGKSPKD--FMKLAEMKELLNACGRDAEFHLAVSST 296 (388)
T ss_pred -------------EeeCcHHHHHHHHHH-----hCCCCEEEEcCCCCCccC--HHHHHHHHHHHHhcCCCCeEEEEEcCC
Confidence 011123334333332 356899999999987522 22355555555543333 356888999
Q ss_pred cCHH-HHHHHhhh
Q psy15524 586 LTPA-VQRLAGMT 597 (930)
Q Consensus 586 ~~~~-~~~l~~~~ 597 (930)
.... +.+....+
T Consensus 297 ~~~~~~~~~~~~~ 309 (388)
T PRK12723 297 TKTSDVKEIFHQF 309 (388)
T ss_pred CCHHHHHHHHHHh
Confidence 8643 44444433
|
|
| >PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.022 Score=58.63 Aligned_cols=87 Identities=20% Similarity=0.208 Sum_probs=64.8
Q ss_pred CCCeEEEEEcccHHHHHHHHHHHHHHhhhcCCceeEEee-CCCchHHHHHHhcC-CCcEEEEChHHHHHHHhcCCCccCC
Q psy15524 55 KDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLT-GGEKMKSEKARIRK-GISILVATPGRLLDHCKHTETLKFS 132 (930)
Q Consensus 55 ~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~l~~-~~~Ilv~Tp~~l~~~l~~~~~~~l~ 132 (930)
.+.+.+|||+..---|.++.+.++.+-... ..+.-+. -....+++...+.. ..+|.||||+|+..++.. +.+.++
T Consensus 124 ~gsP~~lvvs~SalRa~dl~R~l~~~~~k~--~~v~KLFaKH~Kl~eqv~~L~~~~~~i~vGTP~Rl~kLle~-~~L~l~ 200 (252)
T PF14617_consen 124 KGSPHVLVVSSSALRAADLIRALRSFKGKD--CKVAKLFAKHIKLEEQVKLLKKTRVHIAVGTPGRLSKLLEN-GALSLS 200 (252)
T ss_pred CCCCEEEEEcchHHHHHHHHHHHHhhccCC--chHHHHHHhhccHHHHHHHHHhCCceEEEeChHHHHHHHHc-CCCCcc
Confidence 456889999999888999999988874211 1121122 22356667777764 589999999999999976 778899
Q ss_pred CccEEEEccccc
Q psy15524 133 KVEHLVLDEADR 144 (930)
Q Consensus 133 ~l~~vViDE~h~ 144 (930)
++.+||||--|.
T Consensus 201 ~l~~ivlD~s~~ 212 (252)
T PF14617_consen 201 NLKRIVLDWSYL 212 (252)
T ss_pred cCeEEEEcCCcc
Confidence 999999998763
|
|
| >PRK07952 DNA replication protein DnaC; Validated | Back alignment and domain information |
|---|
Probab=95.83 E-value=0.15 Score=52.76 Aligned_cols=40 Identities=18% Similarity=0.189 Sum_probs=25.9
Q ss_pred CcHHHHHHHHHhhc-------C-CcEEEEcCCCChHHHHHHHHHHHHHH
Q psy15524 6 VTTVQQLSIQPILD-------G-GDVLVRSQTGSGKTLAYAIPIIQKLQ 46 (930)
Q Consensus 6 l~~~Q~~ai~~~~~-------g-~~~lv~apTGsGKT~~~~l~~l~~l~ 46 (930)
.++.|+.++..+.. + ..+++.+++|+|||..... +...+.
T Consensus 77 ~~~~q~~al~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~a-ia~~l~ 124 (244)
T PRK07952 77 ECEGQMNALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAA-ICNELL 124 (244)
T ss_pred CCchHHHHHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHH-HHHHHH
Confidence 34567666655432 1 4699999999999986543 334443
|
|
| >smart00491 HELICc2 helicase superfamily c-terminal domain | Back alignment and domain information |
|---|
Probab=95.81 E-value=0.04 Score=51.89 Aligned_cols=69 Identities=16% Similarity=0.317 Sum_probs=49.7
Q ss_pred HHHHHHHHHhhcCCC---cEEEeccc--cccccCCCC--ccEEEEecCCCC----h------------------------
Q psy15524 697 SERTEVFKTFRSVKS---GVLICTDV--AARGLDLPL--VDWIVQYTAPSS----S------------------------ 741 (930)
Q Consensus 697 ~~R~~v~~~F~~~~~---~vLv~T~~--~~~GlDip~--v~~VI~~~~p~s----~------------------------ 741 (930)
.+...+++.|++... .||+++.- +++|+|+|+ ++.||...+|.. +
T Consensus 31 ~~~~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (142)
T smart00491 31 GETEELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIPFPNPDSPILRARLEYLDEKGGIRPFDEVYLF 110 (142)
T ss_pred chHHHHHHHHHHhcCCCCEEEEEEeCCeeecceecCCCccEEEEEEecCCCCCCCHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 345788889987544 69998887 999999997 467888776641 1
Q ss_pred ---hhHHhhhcccccCCCCceEEEEeC
Q psy15524 742 ---TDYVHRVGRTARVGHEGSSLLFLI 765 (930)
Q Consensus 742 ---~~y~qr~GRagR~g~~g~~~~~~~ 765 (930)
....|-+||.-|...+-.+++++.
T Consensus 111 ~a~~~~~Qa~GR~iR~~~D~g~i~l~D 137 (142)
T smart00491 111 DAMRALAQAIGRAIRHKNDYGVVVLLD 137 (142)
T ss_pred HHHHHHHHHhCccccCccceEEEEEEe
Confidence 133588899999877655555553
|
|
| >PRK06526 transposase; Provisional | Back alignment and domain information |
|---|
Probab=95.74 E-value=0.043 Score=57.34 Aligned_cols=28 Identities=21% Similarity=0.165 Sum_probs=21.4
Q ss_pred hhcCCcEEEEcCCCChHHHHHHHHHHHH
Q psy15524 17 ILDGGDVLVRSQTGSGKTLAYAIPIIQK 44 (930)
Q Consensus 17 ~~~g~~~lv~apTGsGKT~~~~l~~l~~ 44 (930)
+..+.+++++||+|+|||.....-+...
T Consensus 95 i~~~~nlll~Gp~GtGKThLa~al~~~a 122 (254)
T PRK06526 95 VTGKENVVFLGPPGTGKTHLAIGLGIRA 122 (254)
T ss_pred hhcCceEEEEeCCCCchHHHHHHHHHHH
Confidence 4467899999999999998766544333
|
|
| >cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold | Back alignment and domain information |
|---|
Probab=95.70 E-value=0.09 Score=49.60 Aligned_cols=17 Identities=29% Similarity=0.462 Sum_probs=14.9
Q ss_pred CCcEEEEccCCCchhHH
Q psy15524 429 GGDVLVRSQTGSGKTLA 445 (930)
Q Consensus 429 ~~d~lv~a~TGsGKTl~ 445 (930)
++.+++.+|+|+|||..
T Consensus 19 ~~~v~i~G~~G~GKT~l 35 (151)
T cd00009 19 PKNLLLYGPPGTGKTTL 35 (151)
T ss_pred CCeEEEECCCCCCHHHH
Confidence 56799999999999964
|
The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases. |
| >TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA | Back alignment and domain information |
|---|
Probab=95.68 E-value=0.081 Score=64.37 Aligned_cols=61 Identities=11% Similarity=0.107 Sum_probs=44.8
Q ss_pred cCcHHHHHHHHHhhcC-CcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHH
Q psy15524 5 QVTTVQQLSIQPILDG-GDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTL 74 (930)
Q Consensus 5 ~l~~~Q~~ai~~~~~g-~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~ 74 (930)
.|++-|+.|+..++.+ +-+++.++.|+|||... -.+...+.. .|..+++++||---+..+.
T Consensus 352 ~Ls~~Q~~Av~~i~~s~~~~il~G~aGTGKTtll-~~i~~~~~~--------~g~~V~~~ApTg~Aa~~L~ 413 (744)
T TIGR02768 352 RLSEEQYEAVRHVTGSGDIAVVVGRAGTGKSTML-KAAREAWEA--------AGYRVIGAALSGKAAEGLQ 413 (744)
T ss_pred CCCHHHHHHHHHHhcCCCEEEEEecCCCCHHHHH-HHHHHHHHh--------CCCeEEEEeCcHHHHHHHH
Confidence 5899999999998874 55899999999999753 333333322 2556999999977665543
|
This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer. |
| >PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit | Back alignment and domain information |
|---|
Probab=95.64 E-value=0.026 Score=58.04 Aligned_cols=87 Identities=20% Similarity=0.227 Sum_probs=59.4
Q ss_pred CCCeeEEEEccCHHHHHHHHHHHHHhhccCCCcceEEEeCCC-chHHHHHHHhc-CCcEEEECchhHHHhhhccCCcccc
Q psy15524 464 KDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGE-KMKSEKARIRK-GISILVATPGRLLDHCKHTETLKFS 541 (930)
Q Consensus 464 ~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~-~~~~~~~~~~~-~~~Ilv~Tp~rl~~~l~~~~~~~~~ 541 (930)
.+.+.+|||+.+--=|..+.+.++.+-... ..+.-+..-. ....+...+.+ ..+|.||||+|+..++.. +.+.++
T Consensus 124 ~gsP~~lvvs~SalRa~dl~R~l~~~~~k~--~~v~KLFaKH~Kl~eqv~~L~~~~~~i~vGTP~Rl~kLle~-~~L~l~ 200 (252)
T PF14617_consen 124 KGSPHVLVVSSSALRAADLIRALRSFKGKD--CKVAKLFAKHIKLEEQVKLLKKTRVHIAVGTPGRLSKLLEN-GALSLS 200 (252)
T ss_pred CCCCEEEEEcchHHHHHHHHHHHHhhccCC--chHHHHHHhhccHHHHHHHHHhCCceEEEeChHHHHHHHHc-CCCCcc
Confidence 457889999998666666666666553110 1111122222 44555555553 589999999999999966 778899
Q ss_pred cceEEEEecchh
Q psy15524 542 KVEHLVLDEADR 553 (930)
Q Consensus 542 ~l~~lVlDEah~ 553 (930)
++.+||||--|+
T Consensus 201 ~l~~ivlD~s~~ 212 (252)
T PF14617_consen 201 NLKRIVLDWSYL 212 (252)
T ss_pred cCeEEEEcCCcc
Confidence 999999998663
|
|
| >PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins | Back alignment and domain information |
|---|
Probab=95.62 E-value=0.043 Score=60.99 Aligned_cols=60 Identities=22% Similarity=0.354 Sum_probs=43.3
Q ss_pred cCcHHHHHHHHHh------hcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHH
Q psy15524 5 QVTTVQQLSIQPI------LDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQT 73 (930)
Q Consensus 5 ~l~~~Q~~ai~~~------~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~ 73 (930)
+|++-|+.++..+ ..+.++.+.+|-|+|||.++ -.+...+.. .+..+++++||-.=|..+
T Consensus 1 ~Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~-~~i~~~~~~--------~~~~~~~~a~tg~AA~~i 66 (364)
T PF05970_consen 1 KLNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFLI-KAIIDYLRS--------RGKKVLVTAPTGIAAFNI 66 (364)
T ss_pred CCCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhHHH-HHHHHHhcc--------ccceEEEecchHHHHHhc
Confidence 4789999999888 67889999999999999753 222233321 244588999987655544
|
The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ]. |
| >PRK00149 dnaA chromosomal replication initiation protein; Reviewed | Back alignment and domain information |
|---|
Probab=95.62 E-value=0.72 Score=53.06 Aligned_cols=45 Identities=16% Similarity=0.141 Sum_probs=27.8
Q ss_pred CcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHH
Q psy15524 430 GDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQT 482 (930)
Q Consensus 430 ~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~ 482 (930)
+.+++.||+|+|||-. +-.+...+... .++..++++.. .++..+.
T Consensus 149 ~~l~l~G~~G~GKThL-~~ai~~~~~~~------~~~~~v~yi~~-~~~~~~~ 193 (450)
T PRK00149 149 NPLFIYGGVGLGKTHL-LHAIGNYILEK------NPNAKVVYVTS-EKFTNDF 193 (450)
T ss_pred CeEEEECCCCCCHHHH-HHHHHHHHHHh------CCCCeEEEEEH-HHHHHHH
Confidence 3489999999999975 33444444431 23556676644 4555443
|
|
| >PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase) | Back alignment and domain information |
|---|
Probab=95.53 E-value=0.1 Score=60.44 Aligned_cols=151 Identities=17% Similarity=0.134 Sum_probs=87.5
Q ss_pred HHHHHHHHHhh-----cC----CcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHH
Q psy15524 8 TVQQLSIQPIL-----DG----GDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFT 78 (930)
Q Consensus 8 ~~Q~~ai~~~~-----~g----~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~ 78 (930)
|+|+-.+..++ .| +.+++.-|-|.|||......++..+... ...+..+++.+++++-|...++.+.
T Consensus 1 PwQ~fi~~~i~G~~~~~g~rrf~~~~l~v~RkNGKS~l~a~i~ly~l~~~-----g~~~~~i~~~A~~~~QA~~~f~~~~ 75 (477)
T PF03354_consen 1 PWQKFILRSIFGWRKDDGRRRFREVYLEVPRKNGKSTLAAAIALYMLFLD-----GEPGAEIYCAANTRDQAKIVFDEAK 75 (477)
T ss_pred CcHHHHHHHHhceEcCCCCEEEEEEEEEEcCccCccHHHHHHHHHHHhcC-----CccCceEEEEeCCHHHHHHHHHHHH
Confidence 68888887766 22 2488889999999998766666555431 2346779999999999999999999
Q ss_pred HHhhhcCCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHh-cCCCccCCCccEEEEcccccccccCcHHHHHHH
Q psy15524 79 KLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCK-HTETLKFSKVEHLVLDEADRILDQGYERDIAEF 157 (930)
Q Consensus 79 ~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~-~~~~~~l~~l~~vViDE~h~~~~~~~~~~~~~i 157 (930)
.+....+...... .. . .... ..-.|.....+.....+. .....+-.+..++|+||+|.+-+.. +...
T Consensus 76 ~~i~~~~~l~~~~--~~---~-~~~~--~~~~i~~~~~~s~~~~~s~~~~~~dG~~~~~~i~DE~h~~~~~~----~~~~ 143 (477)
T PF03354_consen 76 KMIEASPELRKRK--KP---K-IIKS--NKKEIEFPKTGSFFKALSSDADSLDGLNPSLAIFDELHAHKDDE----LYDA 143 (477)
T ss_pred HHHHhChhhccch--hh---h-hhhh--hceEEEEcCCCcEEEEEecCCCCccCCCCceEEEeCCCCCCCHH----HHHH
Confidence 9987543221100 00 0 0000 011222222222222211 1233333467899999999886532 2222
Q ss_pred HHHHhhcCCCceEEEEEe
Q psy15524 158 LEILKKQKPQFQSILLSA 175 (930)
Q Consensus 158 ~~~l~~~~~~~~~i~lSA 175 (930)
+..-....++++++..|.
T Consensus 144 l~~g~~~r~~pl~~~IST 161 (477)
T PF03354_consen 144 LESGMGARPNPLIIIIST 161 (477)
T ss_pred HHhhhccCCCceEEEEeC
Confidence 322223356667666643
|
The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. |
| >PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA | Back alignment and domain information |
|---|
Probab=95.46 E-value=0.036 Score=64.90 Aligned_cols=158 Identities=18% Similarity=0.105 Sum_probs=94.8
Q ss_pred cCcHHHHHHHHHhhcC--CcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHH-HHHHHh
Q psy15524 5 QVTTVQQLSIQPILDG--GDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLE-IFTKLC 81 (930)
Q Consensus 5 ~l~~~Q~~ai~~~~~g--~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~-~~~~~~ 81 (930)
..+|+|.+.+.++... +.+.+..++-+|||.+.+..+...+.. ...-+|++.||.+++.+..+ ++..+.
T Consensus 16 ~~~Py~~eimd~~~~~~v~~Vv~~k~aQ~GkT~~~~n~~g~~i~~--------~P~~~l~v~Pt~~~a~~~~~~rl~Pmi 87 (557)
T PF05876_consen 16 DRTPYLREIMDALSDPSVREVVVMKSAQVGKTELLLNWIGYSIDQ--------DPGPMLYVQPTDDAAKDFSKERLDPMI 87 (557)
T ss_pred CCChhHHHHHHhcCCcCccEEEEEEcchhhHhHHHHhhceEEEEe--------CCCCEEEEEEcHHHHHHHHHHHHHHHH
Confidence 5789999999888754 479999999999999655554444332 12339999999999999984 788887
Q ss_pred hhcCCceeEEee---CCCchHHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEccccccccc--CcHHHHHH
Q psy15524 82 KSFTWIVPSWLT---GGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQ--GYERDIAE 156 (930)
Q Consensus 82 ~~~~~~~~~~~~---g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~--~~~~~~~~ 156 (930)
...+.+...+.. ...........+. +-.+.++.. .+...+.-..++++++||+|.+.++ +-+..+..
T Consensus 88 ~~sp~l~~~~~~~~~~~~~~t~~~k~f~-gg~l~~~ga-------~S~~~l~s~~~r~~~~DEvD~~p~~~~~eGdp~~l 159 (557)
T PF05876_consen 88 RASPVLRRKLSPSKSRDSGNTILYKRFP-GGFLYLVGA-------NSPSNLRSRPARYLLLDEVDRYPDDVGGEGDPVEL 159 (557)
T ss_pred HhCHHHHHHhCchhhcccCCchhheecC-CCEEEEEeC-------CCCcccccCCcCEEEEechhhccccCccCCCHHHH
Confidence 765543322111 1111112222223 223433332 2223444567899999999998542 23344444
Q ss_pred HHHHHhhcCCCceEEEEEeecCC
Q psy15524 157 FLEILKKQKPQFQSILLSATLTP 179 (930)
Q Consensus 157 i~~~l~~~~~~~~~i~lSAT~~~ 179 (930)
...+......+ ..+++..||..
T Consensus 160 a~~R~~tf~~~-~K~~~~STPt~ 181 (557)
T PF05876_consen 160 AEKRTKTFGSN-RKILRISTPTI 181 (557)
T ss_pred HHHHHhhhccC-cEEEEeCCCCC
Confidence 44444433222 34555556643
|
The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities []. |
| >PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins | Back alignment and domain information |
|---|
Probab=95.32 E-value=0.075 Score=55.84 Aligned_cols=120 Identities=18% Similarity=0.255 Sum_probs=61.4
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCC---CeEEEEEcccHHHHHHHHHHHHHHhhhcCCceeEEeeCCCc
Q psy15524 21 GDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKD---GIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEK 97 (930)
Q Consensus 21 ~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~---~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~ 97 (930)
.|++++|+|+.|||.+ +.++.+.-+.....+ -+-+++-+|...-....+..+-.... .+ . .....
T Consensus 62 p~lLivG~snnGKT~I-----i~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lg-aP---~---~~~~~ 129 (302)
T PF05621_consen 62 PNLLIVGDSNNGKTMI-----IERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALG-AP---Y---RPRDR 129 (302)
T ss_pred CceEEecCCCCcHHHH-----HHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhC-cc---c---CCCCC
Confidence 4899999999999984 344443222211111 23455566777766666665433321 11 0 00111
Q ss_pred hHHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCcHHHHHHHHHHHhhcCC--CceEEEE
Q psy15524 98 MKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKP--QFQSILL 173 (930)
Q Consensus 98 ~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~~~~~~~i~~~l~~~~~--~~~~i~l 173 (930)
.... -.....++. --+++++||||+|.++...... -+.+++.++..++ ++.++++
T Consensus 130 ~~~~--------------~~~~~~llr------~~~vrmLIIDE~H~lLaGs~~~-qr~~Ln~LK~L~NeL~ipiV~v 186 (302)
T PF05621_consen 130 VAKL--------------EQQVLRLLR------RLGVRMLIIDEFHNLLAGSYRK-QREFLNALKFLGNELQIPIVGV 186 (302)
T ss_pred HHHH--------------HHHHHHHHH------HcCCcEEEeechHHHhcccHHH-HHHHHHHHHHHhhccCCCeEEe
Confidence 1100 011122332 3568999999999998765443 2344444444332 3445543
|
TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition []. |
| >COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=95.31 E-value=0.068 Score=55.93 Aligned_cols=65 Identities=14% Similarity=0.190 Sum_probs=43.2
Q ss_pred CccCcHHHHHHHHHhh-------cCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHH
Q psy15524 3 ITQVTTVQQLSIQPIL-------DGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLE 75 (930)
Q Consensus 3 ~~~l~~~Q~~ai~~~~-------~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~ 75 (930)
|......++.++..+. .+.++++.||+|+|||..+..-+...+ . .+.-++++++.+|+.++..
T Consensus 81 ~~~~~~~~~~~l~~~~~~~~~~~~~~nl~l~G~~G~GKThLa~Ai~~~l~-~---------~g~sv~f~~~~el~~~Lk~ 150 (254)
T COG1484 81 FEFQPGIDKKALEDLASLVEFFERGENLVLLGPPGVGKTHLAIAIGNELL-K---------AGISVLFITAPDLLSKLKA 150 (254)
T ss_pred ccCCcchhHHHHHHHHHHHHHhccCCcEEEECCCCCcHHHHHHHHHHHHH-H---------cCCeEEEEEHHHHHHHHHH
Confidence 4445556666555443 467999999999999987555444433 3 1235677788888887665
Q ss_pred HH
Q psy15524 76 IF 77 (930)
Q Consensus 76 ~~ 77 (930)
.+
T Consensus 151 ~~ 152 (254)
T COG1484 151 AF 152 (254)
T ss_pred HH
Confidence 44
|
|
| >PRK07952 DNA replication protein DnaC; Validated | Back alignment and domain information |
|---|
Probab=95.29 E-value=0.29 Score=50.69 Aligned_cols=49 Identities=20% Similarity=0.294 Sum_probs=28.6
Q ss_pred cccceEEEEecchhhhhcCcHH-HHHHHHHHHhhcCccceEEEEccccCHHH
Q psy15524 540 FSKVEHLVLDEADRILDQGYER-DIAEFLEILKKQKPQFQSILLSATLTPAV 590 (930)
Q Consensus 540 ~~~l~~lVlDEah~l~~~g~~~-~l~~i~~~l~~~~~~~q~vl~SAT~~~~~ 590 (930)
+.++++|||||++......+.. .+..|+..-.. ....+++.|---+.++
T Consensus 160 l~~~dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~--~~~~tiitSNl~~~~l 209 (244)
T PRK07952 160 LSNVDLLVIDEIGVQTESRYEKVIINQIVDRRSS--SKRPTGMLTNSNMEEM 209 (244)
T ss_pred hccCCEEEEeCCCCCCCCHHHHHHHHHHHHHHHh--CCCCEEEeCCCCHHHH
Confidence 3468899999999876444443 44445544321 2456666665544433
|
|
| >PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=95.27 E-value=0.34 Score=53.12 Aligned_cols=129 Identities=18% Similarity=0.253 Sum_probs=66.9
Q ss_pred CcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEc--cCHHHHHHHHHHHHHhhccCCCcceEEEeCCCch
Q psy15524 430 GDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIIL--PTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKM 507 (930)
Q Consensus 430 ~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~--PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~ 507 (930)
+.+.+.+|||+|||.+...-+.. +.. .|.++.++. |.|.-+.++...+....
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~~-L~~--------~GkkVglI~aDt~RiaAvEQLk~yae~l----------------- 295 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAWQ-FHG--------KKKTVGFITTDHSRIGTVQQLQDYVKTI----------------- 295 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHHH-HHH--------cCCcEEEEecCCcchHHHHHHHHHhhhc-----------------
Confidence 56889999999999875444433 322 244444444 34432322222221111
Q ss_pred HHHHHHHhcCCcEE-EECchhHHHhhhccCCcccccceEEEEecchhhhhcCcHHHHHHHHHHHhhcCccceEEEEcccc
Q psy15524 508 KSEKARIRKGISIL-VATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATL 586 (930)
Q Consensus 508 ~~~~~~~~~~~~Il-v~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~l~~~g~~~~l~~i~~~l~~~~~~~q~vl~SAT~ 586 (930)
++.++ +.+|..+.+.+..... -.++++|++|-+=+.... ...+..+.+.+....+..-.+.+|||.
T Consensus 296 ---------gipv~v~~d~~~L~~aL~~lk~--~~~~DvVLIDTaGRs~kd--~~lm~EL~~~lk~~~PdevlLVLsATt 362 (436)
T PRK11889 296 ---------GFEVIAVRDEAAMTRALTYFKE--EARVDYILIDTAGKNYRA--SETVEEMIETMGQVEPDYICLTLSASM 362 (436)
T ss_pred ---------CCcEEecCCHHHHHHHHHHHHh--ccCCCEEEEeCccccCcC--HHHHHHHHHHHhhcCCCeEEEEECCcc
Confidence 22222 3355556554433110 124788999988764422 344555555555444454456689876
Q ss_pred CH-HHHHHHhhh
Q psy15524 587 TP-AVQRLAGMT 597 (930)
Q Consensus 587 ~~-~~~~l~~~~ 597 (930)
.. +....+..+
T Consensus 363 k~~d~~~i~~~F 374 (436)
T PRK11889 363 KSKDMIEIITNF 374 (436)
T ss_pred ChHHHHHHHHHh
Confidence 54 445555543
|
|
| >PRK12723 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=95.21 E-value=0.21 Score=55.41 Aligned_cols=122 Identities=16% Similarity=0.080 Sum_probs=67.2
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEc--ccHHHHHHHHHHHHHHhhhcCCceeEEeeCCCch
Q psy15524 21 GDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIIL--PTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKM 98 (930)
Q Consensus 21 ~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~--P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~ 98 (930)
..+++++|||+|||....--+........ ..+.++.++. +.+.-+..+... ++..++ +.+
T Consensus 175 ~vi~lvGptGvGKTTT~aKLA~~~~~~~~-----~~g~~V~lit~Dt~R~aa~eQL~~---~a~~lg-vpv--------- 236 (388)
T PRK12723 175 RVFILVGPTGVGKTTTIAKLAAIYGINSD-----DKSLNIKIITIDNYRIGAKKQIQT---YGDIMG-IPV--------- 236 (388)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhhhc-----cCCCeEEEEeccCccHHHHHHHHH---HhhcCC-cce---------
Confidence 46899999999999876544332222110 1133344444 445555544333 332222 111
Q ss_pred HHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCcHHHHHHHHHHHhhcCCC-ceEEEEEeec
Q psy15524 99 KSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQ-FQSILLSATL 177 (930)
Q Consensus 99 ~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~~~~~~~i~~~l~~~~~~-~~~i~lSAT~ 177 (930)
..+-++..+...+.. +.+.++|+||++.+..... ..+..+...+....+. -.++-+|||.
T Consensus 237 ------------~~~~~~~~l~~~L~~-----~~~~DlVLIDTaGr~~~~~--~~l~el~~~l~~~~~~~e~~LVlsat~ 297 (388)
T PRK12723 237 ------------KAIESFKDLKEEITQ-----SKDFDLVLVDTIGKSPKDF--MKLAEMKELLNACGRDAEFHLAVSSTT 297 (388)
T ss_pred ------------EeeCcHHHHHHHHHH-----hCCCCEEEEcCCCCCccCH--HHHHHHHHHHHhcCCCCeEEEEEcCCC
Confidence 112245555554443 4678999999999875321 2345555555544333 4678899998
Q ss_pred CC
Q psy15524 178 TP 179 (930)
Q Consensus 178 ~~ 179 (930)
..
T Consensus 298 ~~ 299 (388)
T PRK12723 298 KT 299 (388)
T ss_pred CH
Confidence 64
|
|
| >PF13871 Helicase_C_4: Helicase_C-like | Back alignment and domain information |
|---|
Probab=95.09 E-value=0.074 Score=55.50 Aligned_cols=77 Identities=21% Similarity=0.337 Sum_probs=59.2
Q ss_pred HHHHHhhcCCCcEEEeccccccccCCCC--------ccEEEEecCCCChhhHHhhhcccccCCCC-ceEEEEeC---ccc
Q psy15524 701 EVFKTFRSVKSGVLICTDVAARGLDLPL--------VDWIVQYTAPSSSTDYVHRVGRTARVGHE-GSSLLFLI---PSE 768 (930)
Q Consensus 701 ~v~~~F~~~~~~vLv~T~~~~~GlDip~--------v~~VI~~~~p~s~~~y~qr~GRagR~g~~-g~~~~~~~---~~e 768 (930)
...+.|.+|+..|+|.+++++.|+-+.+ -++-|...+|++.+..+|..||+.|.|+. .-.+.++. +.|
T Consensus 52 ~e~~~F~~g~k~v~iis~AgstGiSlHAd~~~~nqr~Rv~i~le~pwsad~aiQ~~GR~hRsnQ~~~P~y~~l~t~~~gE 131 (278)
T PF13871_consen 52 AEKQAFMDGEKDVAIISDAGSTGISLHADRRVKNQRRRVHITLELPWSADKAIQQFGRTHRSNQVSAPEYRFLVTDLPGE 131 (278)
T ss_pred HHHHHHhCCCceEEEEecccccccchhccccCCCCCceEEEEeeCCCCHHHHHHHhccccccccccCCEEEEeecCCHHH
Confidence 5667899999999999999999998853 23667788999999999999999999984 33344443 246
Q ss_pred HHHHHHHHh
Q psy15524 769 VKLVEELQN 777 (930)
Q Consensus 769 ~~~~~~l~~ 777 (930)
..|...+.+
T Consensus 132 ~Rfas~va~ 140 (278)
T PF13871_consen 132 RRFASTVAR 140 (278)
T ss_pred HHHHHHHHH
Confidence 656555544
|
|
| >PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=95.08 E-value=0.42 Score=57.93 Aligned_cols=269 Identities=17% Similarity=0.169 Sum_probs=0.0
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHH-HHHHHHHHHHhhhcCCceeEEeeCCCc
Q psy15524 19 DGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELA-LQTLEIFTKLCKSFTWIVPSWLTGGEK 97 (930)
Q Consensus 19 ~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~-~q~~~~~~~~~~~~~~~~~~~~~g~~~ 97 (930)
...|+|+.+|+|+|||...-.-+...+....+.. ..+...+.+.+..-++ ......+++.
T Consensus 206 ~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~--l~~~~~~~l~~~~llaG~~~~Ge~e~r----------------- 266 (758)
T PRK11034 206 RKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEV--MADCTIYSLDIGSLLAGTKYRGDFEKR----------------- 266 (758)
T ss_pred CCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCch--hcCCeEEeccHHHHhcccchhhhHHHH-----------------
Q ss_pred hHHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCc----HHHHHHHHHHHhhcCCCceEEEE
Q psy15524 98 MKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGY----ERDIAEFLEILKKQKPQFQSILL 173 (930)
Q Consensus 98 ~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~----~~~~~~i~~~l~~~~~~~~~i~l 173 (930)
-..+.+.+.. ..-.+|+|||+|.+...+. ..++..++..+-...
T Consensus 267 ------------------l~~l~~~l~~------~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~g-------- 314 (758)
T PRK11034 267 ------------------FKALLKQLEQ------DTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSG-------- 314 (758)
T ss_pred ------------------HHHHHHHHHh------cCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhCC--------
Q ss_pred EeecCCCccccccccccccccccchhhhhhhhhhhccchhhHHHHHHHHhhcCcCceEEEEecccchHHHHh---hhccc
Q psy15524 174 SATLTPATCWCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLTPAVQRL---AGMTL 250 (930)
Q Consensus 174 SAT~~~~~~~~~~~~~~~~~~~~~~~~de~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~sat~~~~~~~l---~~~~l 250 (930)
...++.+|-.+..... -..+.
T Consensus 315 --------------------------------------------------------~i~vIgATt~~E~~~~~~~D~AL~ 338 (758)
T PRK11034 315 --------------------------------------------------------KIRVIGSTTYQEFSNIFEKDRALA 338 (758)
T ss_pred --------------------------------------------------------CeEEEecCChHHHHHHhhccHHHH
Q ss_pred cCCeeeccCCcccccCCCcccccCCCceeEEEEcCcchhHHHHHHHHhhhccccccCCcceEE--------EEEecccch
Q psy15524 251 QNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKML--------VFMATQDMA 322 (930)
Q Consensus 251 ~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~i--------VF~~s~~~~ 322 (930)
+....+.+.... .+.....|..+...+..+-...-...++ -|.+.+..-
T Consensus 339 rRFq~I~v~ePs-----------------------~~~~~~IL~~~~~~ye~~h~v~i~~~al~~a~~ls~ryi~~r~lP 395 (758)
T PRK11034 339 RRFQKIDITEPS-----------------------IEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLP 395 (758)
T ss_pred hhCcEEEeCCCC-----------------------HHHHHHHHHHHHHHhhhccCCCcCHHHHHHHHHHhhccccCccCh
Q ss_pred hhhHHHHhhhhhhhhhcccCCCCCCCCCCcccccccccccccccCCCCCCCCCCCCCCCCccccCCCCCCCCCCCCCHHH
Q psy15524 323 DYHTELLSTKKKIKKLKEYNIDPDNYEIPKKTEVKSGPISSLFQNNPDIPNVPTRRLKPVSEALFAPTSYEEFPGIHPFM 402 (930)
Q Consensus 323 ~~l~~~L~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~l~~l~~~~ 402 (930)
+..-+.|...+...+....... ...+....+...+....++| -..+..-....
T Consensus 396 dKaidlldea~a~~~~~~~~~~--------~~~v~~~~i~~v~~~~tgip-------------------~~~~~~~~~~~ 448 (758)
T PRK11034 396 DKAIDVIDEAGARARLMPVSKR--------KKTVNVADIESVVARIARIP-------------------EKSVSQSDRDT 448 (758)
T ss_pred HHHHHHHHHHHHhhccCccccc--------ccccChhhHHHHHHHHhCCC-------------------hhhhhhhHHHH
Q ss_pred HHHHHhcCCCCCCCHHHHHhHHhhhcC---------------CcEEEEccCCCchhHHh
Q psy15524 403 KKNLNEGMNITQVTTVQQLSIQPILDG---------------GDVLVRSQTGSGKTLAY 446 (930)
Q Consensus 403 ~~~l~~~~~~~~~~~iQ~~~i~~il~~---------------~d~lv~a~TGsGKTl~~ 446 (930)
+..|.+ .+..-=-.|..++..+... ..+++.+|||+|||..+
T Consensus 449 l~~l~~--~L~~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lA 505 (758)
T PRK11034 449 LKNLGD--RLKMLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVT 505 (758)
T ss_pred HHHHHH--HhcceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHH
|
|
| >PRK04296 thymidine kinase; Provisional | Back alignment and domain information |
|---|
Probab=95.07 E-value=0.071 Score=53.26 Aligned_cols=35 Identities=14% Similarity=0.197 Sum_probs=23.2
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcc
Q psy15524 22 DVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILP 65 (930)
Q Consensus 22 ~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P 65 (930)
=.++.+|+|+|||...+--+...... +.+++++-|
T Consensus 4 i~litG~~GsGKTT~~l~~~~~~~~~---------g~~v~i~k~ 38 (190)
T PRK04296 4 LEFIYGAMNSGKSTELLQRAYNYEER---------GMKVLVFKP 38 (190)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHc---------CCeEEEEec
Confidence 46889999999997655444333322 455787766
|
|
| >COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=95.02 E-value=0.084 Score=62.70 Aligned_cols=128 Identities=20% Similarity=0.177 Sum_probs=86.7
Q ss_pred cHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHHhhhcCC
Q psy15524 7 TTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTW 86 (930)
Q Consensus 7 ~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~ 86 (930)
+|+-.+.+..+.....-+.-+.||-|||++..+|+.-..+. |..+.++.-.-=||.--.+++..+...++
T Consensus 80 ~~~dVQliG~i~lh~g~iaEM~TGEGKTL~atlp~ylnaL~---------gkgVhvVTvNdYLA~RDae~m~~l~~~LG- 149 (822)
T COG0653 80 RHFDVQLLGGIVLHLGDIAEMRTGEGKTLVATLPAYLNALA---------GKGVHVVTVNDYLARRDAEWMGPLYEFLG- 149 (822)
T ss_pred ChhhHHHhhhhhhcCCceeeeecCCchHHHHHHHHHHHhcC---------CCCcEEeeehHHhhhhCHHHHHHHHHHcC-
Confidence 44445555666666678999999999999999998644433 33367777777788888888888887766
Q ss_pred ceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHH-HHHh-----cCCCccCCCccEEEEccccccc
Q psy15524 87 IVPSWLTGGEKMKSEKARIRKGISILVATPGRLL-DHCK-----HTETLKFSKVEHLVLDEADRIL 146 (930)
Q Consensus 87 ~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~-~~l~-----~~~~~~l~~l~~vViDE~h~~~ 146 (930)
+.+++...+........ .-.|||.++|...+- +.++ +........+.+-|+||+|.++
T Consensus 150 lsvG~~~~~m~~~ek~~--aY~~DItY~TnnElGFDYLRDNm~~~~ee~vqr~~~faIvDEvDSIL 213 (822)
T COG0653 150 LSVGVILAGMSPEEKRA--AYACDITYGTNNELGFDYLRDNMVTSQEEKVQRGLNFAIVDEVDSIL 213 (822)
T ss_pred CceeeccCCCChHHHHH--HHhcCceeccccccCcchhhhhhhccHHHhhhccCCeEEEcchhhee
Confidence 66666655554443333 235899999987652 1111 1122225678999999999765
|
|
| >cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs | Back alignment and domain information |
|---|
Probab=94.98 E-value=0.15 Score=50.75 Aligned_cols=48 Identities=21% Similarity=0.169 Sum_probs=33.4
Q ss_pred EEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHHHHh
Q psy15524 432 VLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKL 489 (930)
Q Consensus 432 ~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~ 489 (930)
+++.+|+|+|||...+--+...+. .|..++|++. .+-..++.+.+..+
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~---------~g~~v~~~s~-e~~~~~~~~~~~~~ 49 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLA---------RGEPGLYVTL-EESPEELIENAESL 49 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHH---------CCCcEEEEEC-CCCHHHHHHHHHHc
Confidence 689999999999875555554443 2666888865 46667776666655
|
A related protein is found in archaea. |
| >PRK08084 DNA replication initiation factor; Provisional | Back alignment and domain information |
|---|
Probab=94.90 E-value=0.42 Score=49.57 Aligned_cols=44 Identities=14% Similarity=0.292 Sum_probs=26.5
Q ss_pred ceEEEEecchhhhhc-CcHHHHHHHHHHHhhcCccceEEEEccccCH
Q psy15524 543 VEHLVLDEADRILDQ-GYERDIAEFLEILKKQKPQFQSILLSATLTP 588 (930)
Q Consensus 543 l~~lVlDEah~l~~~-g~~~~l~~i~~~l~~~~~~~q~vl~SAT~~~ 588 (930)
.++++|||+|.+... .++..+..++..+... ...+ +++|++.++
T Consensus 98 ~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~-g~~~-li~ts~~~p 142 (235)
T PRK08084 98 LSLVCIDNIECIAGDELWEMAIFDLYNRILES-GRTR-LLITGDRPP 142 (235)
T ss_pred CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHc-CCCe-EEEeCCCCh
Confidence 478999999988643 3555666666665431 1234 445555443
|
|
| >PRK08727 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=94.89 E-value=0.19 Score=52.09 Aligned_cols=46 Identities=13% Similarity=0.146 Sum_probs=26.1
Q ss_pred ccceEEEEecchhhhhcC-cHHHHHHHHHHHhhcCccceEEEEccccCH
Q psy15524 541 SKVEHLVLDEADRILDQG-YERDIAEFLEILKKQKPQFQSILLSATLTP 588 (930)
Q Consensus 541 ~~l~~lVlDEah~l~~~g-~~~~l~~i~~~l~~~~~~~q~vl~SAT~~~ 588 (930)
.+.++|||||+|.+.... ....+..++..+.. ...++++.|-..|.
T Consensus 92 ~~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~--~~~~vI~ts~~~p~ 138 (233)
T PRK08727 92 EGRSLVALDGLESIAGQREDEVALFDFHNRARA--AGITLLYTARQMPD 138 (233)
T ss_pred hcCCEEEEeCcccccCChHHHHHHHHHHHHHHH--cCCeEEEECCCChh
Confidence 445789999999886433 33445555555533 13345554444444
|
|
| >PRK12377 putative replication protein; Provisional | Back alignment and domain information |
|---|
Probab=94.88 E-value=0.46 Score=49.38 Aligned_cols=46 Identities=17% Similarity=0.285 Sum_probs=28.7
Q ss_pred CCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHH
Q psy15524 429 GGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLE 484 (930)
Q Consensus 429 ~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~ 484 (930)
..++++.+|+|+|||-. +.++...+.. .|..+++ ++..+|..++..
T Consensus 101 ~~~l~l~G~~GtGKThL-a~AIa~~l~~--------~g~~v~~-i~~~~l~~~l~~ 146 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHL-AAAIGNRLLA--------KGRSVIV-VTVPDVMSRLHE 146 (248)
T ss_pred CCeEEEECCCCCCHHHH-HHHHHHHHHH--------cCCCeEE-EEHHHHHHHHHH
Confidence 35799999999999975 3444444443 2444444 455567665543
|
|
| >PRK06921 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=94.85 E-value=0.43 Score=50.39 Aligned_cols=44 Identities=23% Similarity=0.172 Sum_probs=27.6
Q ss_pred CCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHH
Q psy15524 429 GGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQ 481 (930)
Q Consensus 429 ~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q 481 (930)
+..+++.+++|+|||.. +.++...+.. ..|..++++.. .++..+
T Consensus 117 ~~~l~l~G~~G~GKThL-a~aia~~l~~-------~~g~~v~y~~~-~~l~~~ 160 (266)
T PRK06921 117 KNSIALLGQPGSGKTHL-LTAAANELMR-------KKGVPVLYFPF-VEGFGD 160 (266)
T ss_pred CCeEEEECCCCCcHHHH-HHHHHHHHhh-------hcCceEEEEEH-HHHHHH
Confidence 56799999999999975 3444544443 11555666653 444443
|
|
| >KOG0298|consensus | Back alignment and domain information |
|---|
Probab=94.77 E-value=0.086 Score=64.24 Aligned_cols=156 Identities=21% Similarity=0.169 Sum_probs=93.8
Q ss_pred cCCcEEEEccCCCchhHHhhHHHHHHHHhhCc---------ccCCCCCeeEEEEccCHHHHHHHHHHHHHhhccCCCcce
Q psy15524 428 DGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRP---------KISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVP 498 (930)
Q Consensus 428 ~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~---------~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~ 498 (930)
.|++++..-..|.|||.+-+.-.+..+-...+ ..........|||+|. ++..||++++.+..... + -
T Consensus 373 ~g~~~~~ade~~~qk~~~~l~~~l~~~~k~~~~~cS~~~~e~~n~~~tgaTLII~P~-aIl~QW~~EI~kH~~~~--l-K 448 (1394)
T KOG0298|consen 373 HGKRVQCADEMGWQKTSEKLILELSDLPKLCPSCCSELVKEGENLVETGATLIICPN-AILMQWFEEIHKHISSL--L-K 448 (1394)
T ss_pred CCcceeehhhhhccchHHHHHHHHhcccccchhhhhHHHhcccceeecCceEEECcH-HHHHHHHHHHHHhcccc--c-e
Confidence 35778999999999999866555543211110 1112233458999997 88899999998877543 2 2
Q ss_pred EEEeCCCchHHH-HHHHhcCCcEEEECchhHHHhhhccCCc-------------c----ccc--ceEEEEecchhhhhcC
Q psy15524 499 SWLTGGEKMKSE-KARIRKGISILVATPGRLLDHCKHTETL-------------K----FSK--VEHLVLDEADRILDQG 558 (930)
Q Consensus 499 ~~~~gg~~~~~~-~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~-------------~----~~~--l~~lVlDEah~l~~~g 558 (930)
.+++-|-..... .....-.+|||++|..-|-.-+..+... . +-. +--|++|||+++-.
T Consensus 449 v~~Y~Girk~~~~~~~el~~yDIVlTtYdiLr~El~hte~~~~~R~lR~qsr~~~~~SPL~~v~wWRIclDEaQMves-- 526 (1394)
T KOG0298|consen 449 VLLYFGIRKTFWLSPFELLQYDIVLTTYDILRNELYHTEDFGSDRQLRHQSRYMRPNSPLLMVNWWRICLDEAQMVES-- 526 (1394)
T ss_pred EEEEechhhhcccCchhhhccCEEEeehHHHHhHhhcccccCChhhhhcccCCCCCCCchHHHHHHHHhhhHHHhhcc--
Confidence 333444221110 0012236999999998885544332111 0 111 22489999997643
Q ss_pred cHHHHHHHHHHHhhcCccceEEEEccccCHHHHHH
Q psy15524 559 YERDIAEFLEILKKQKPQFQSILLSATLTPAVQRL 593 (930)
Q Consensus 559 ~~~~l~~i~~~l~~~~~~~q~vl~SAT~~~~~~~l 593 (930)
-.....+++.+|+ ......+|+|+-..+.++
T Consensus 527 ssS~~a~M~~rL~----~in~W~VTGTPiq~Iddl 557 (1394)
T KOG0298|consen 527 SSSAAAEMVRRLH----AINRWCVTGTPIQKIDDL 557 (1394)
T ss_pred hHHHHHHHHHHhh----hhceeeecCCchhhhhhh
Confidence 3556677777776 345688999965444443
|
|
| >PRK14087 dnaA chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
Probab=94.76 E-value=0.25 Score=56.38 Aligned_cols=110 Identities=11% Similarity=0.124 Sum_probs=61.9
Q ss_pred CcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHHHHhhccCCCcceEEEeCCCchHH
Q psy15524 430 GDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKS 509 (930)
Q Consensus 430 ~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~ 509 (930)
+.+++.|++|+|||-. +-.+...+... ..+.+++++.+ .++..++...+....
T Consensus 142 npl~i~G~~G~GKTHL-l~Ai~~~l~~~------~~~~~v~yv~~-~~f~~~~~~~l~~~~------------------- 194 (450)
T PRK14087 142 NPLFIYGESGMGKTHL-LKAAKNYIESN------FSDLKVSYMSG-DEFARKAVDILQKTH------------------- 194 (450)
T ss_pred CceEEECCCCCcHHHH-HHHHHHHHHHh------CCCCeEEEEEH-HHHHHHHHHHHHHhh-------------------
Confidence 3489999999999954 34455544431 23566777665 566655554442200
Q ss_pred HHHHHhcCCcEEEECchhHHHhhhccCCcccccceEEEEecchhhhhc-CcHHHHHHHHHHHhhcCccceEEEEccccCH
Q psy15524 510 EKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQ-GYERDIAEFLEILKKQKPQFQSILLSATLTP 588 (930)
Q Consensus 510 ~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~l~~~-g~~~~l~~i~~~l~~~~~~~q~vl~SAT~~~ 588 (930)
+.+..... .+.+.++|||||+|.+... ...+.+..++..+... +.|+++.|-..|.
T Consensus 195 ----------------~~~~~~~~-----~~~~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~--~k~iIltsd~~P~ 251 (450)
T PRK14087 195 ----------------KEIEQFKN-----EICQNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIEN--DKQLFFSSDKSPE 251 (450)
T ss_pred ----------------hHHHHHHH-----HhccCCEEEEeccccccCCHHHHHHHHHHHHHHHHc--CCcEEEECCCCHH
Confidence 01111111 1345789999999987532 2345566666666542 3466655555544
Q ss_pred H
Q psy15524 589 A 589 (930)
Q Consensus 589 ~ 589 (930)
.
T Consensus 252 ~ 252 (450)
T PRK14087 252 L 252 (450)
T ss_pred H
Confidence 3
|
|
| >PRK13826 Dtr system oriT relaxase; Provisional | Back alignment and domain information |
|---|
Probab=94.69 E-value=0.37 Score=60.13 Aligned_cols=60 Identities=17% Similarity=0.104 Sum_probs=44.2
Q ss_pred cCcHHHHHHHHHhhc-CCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHH
Q psy15524 5 QVTTVQQLSIQPILD-GGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQT 73 (930)
Q Consensus 5 ~l~~~Q~~ai~~~~~-g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~ 73 (930)
.|++-|.+|+..+.. ++=+++.++-|+|||.+ +-++...+.. .|.+++.++||-.=+..+
T Consensus 381 ~Ls~eQ~~Av~~i~~~~r~~~v~G~AGTGKTt~-l~~~~~~~e~--------~G~~V~g~ApTgkAA~~L 441 (1102)
T PRK13826 381 RLSDEQKTAIEHVAGPARIAAVVGRAGAGKTTM-MKAAREAWEA--------AGYRVVGGALAGKAAEGL 441 (1102)
T ss_pred CCCHHHHHHHHHHhccCCeEEEEeCCCCCHHHH-HHHHHHHHHH--------cCCeEEEEcCcHHHHHHH
Confidence 589999999998864 44589999999999975 3344444432 356799999997666544
|
|
| >PHA03368 DNA packaging terminase subunit 1; Provisional | Back alignment and domain information |
|---|
Probab=94.66 E-value=0.37 Score=55.88 Aligned_cols=136 Identities=18% Similarity=0.200 Sum_probs=86.7
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHHhhhc-CCceeEEeeCCCch
Q psy15524 20 GGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSF-TWIVPSWLTGGEKM 98 (930)
Q Consensus 20 g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~-~~~~~~~~~g~~~~ 98 (930)
.+-.++..|--.|||+... +++..+.. ...|.++++.+|.+.-++..++++....+.. +...+....| +..
T Consensus 254 qk~tVflVPRR~GKTwivv-~iI~~ll~------s~~Gi~IgytAH~~~ts~~vF~eI~~~le~~f~~~~v~~vkG-e~I 325 (738)
T PHA03368 254 QRATVFLVPRRHGKTWFLV-PLIALALA------TFRGIKIGYTAHIRKATEPVFEEIGARLRQWFGASRVDHVKG-ETI 325 (738)
T ss_pred ccceEEEecccCCchhhHH-HHHHHHHH------hCCCCEEEEEcCcHHHHHHHHHHHHHHHhhhcchhheeeecC-cEE
Confidence 3568999999999999655 66665553 1247789999999999999999998886642 1111111222 111
Q ss_pred HHHHHHhcCC--CcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCcHHHHHHHHHHHhhcCCCceEEEEEee
Q psy15524 99 KSEKARIRKG--ISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSAT 176 (930)
Q Consensus 99 ~~~~~~l~~~--~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~~~~~~~i~~~l~~~~~~~~~i~lSAT 176 (930)
.-.+..+ ..|.++|- .+.+...-..++++|||||+.+-+ ..+..++..+... ++++|+.|-|
T Consensus 326 ---~i~f~nG~kstI~FaSa-------rntNsiRGqtfDLLIVDEAqFIk~----~al~~ilp~l~~~--n~k~I~ISS~ 389 (738)
T PHA03368 326 ---SFSFPDGSRSTIVFASS-------HNTNGIRGQDFNLLFVDEANFIRP----DAVQTIMGFLNQT--NCKIIFVSST 389 (738)
T ss_pred ---EEEecCCCccEEEEEec-------cCCCCccCCcccEEEEechhhCCH----HHHHHHHHHHhcc--CccEEEEecC
Confidence 0011112 24556531 233445556899999999998865 3445555444433 6789999988
Q ss_pred cCC
Q psy15524 177 LTP 179 (930)
Q Consensus 177 ~~~ 179 (930)
-+.
T Consensus 390 Ns~ 392 (738)
T PHA03368 390 NTG 392 (738)
T ss_pred CCC
Confidence 653
|
|
| >PRK06893 DNA replication initiation factor; Validated | Back alignment and domain information |
|---|
Probab=94.63 E-value=0.19 Score=51.93 Aligned_cols=46 Identities=20% Similarity=0.398 Sum_probs=29.5
Q ss_pred ccceEEEEecchhhhh-cCcHHHHHHHHHHHhhcCccceEEEEccccCH
Q psy15524 541 SKVEHLVLDEADRILD-QGYERDIAEFLEILKKQKPQFQSILLSATLTP 588 (930)
Q Consensus 541 ~~l~~lVlDEah~l~~-~g~~~~l~~i~~~l~~~~~~~q~vl~SAT~~~ 588 (930)
.+.+++|+||+|.+.. ..+...+..++..+.. .+.+++++|++.++
T Consensus 90 ~~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~--~~~~illits~~~p 136 (229)
T PRK06893 90 EQQDLVCLDDLQAVIGNEEWELAIFDLFNRIKE--QGKTLLLISADCSP 136 (229)
T ss_pred ccCCEEEEeChhhhcCChHHHHHHHHHHHHHHH--cCCcEEEEeCCCCh
Confidence 4578999999998863 2344455566655543 13456677777654
|
|
| >PHA03368 DNA packaging terminase subunit 1; Provisional | Back alignment and domain information |
|---|
Probab=94.59 E-value=0.45 Score=55.14 Aligned_cols=162 Identities=17% Similarity=0.169 Sum_probs=98.7
Q ss_pred CHHHHHHHHhcCCCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHH
Q psy15524 399 HPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTREL 478 (930)
Q Consensus 399 ~~~~~~~l~~~~~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreL 478 (930)
...+-..|+..|+...++.-= =.....+-.++..|=-.|||.... +++..+.. .-.|.++++.+|.+.-
T Consensus 228 a~r~~~~lk~~Fdi~~~s~~~----~~~fkqk~tVflVPRR~GKTwivv-~iI~~ll~------s~~Gi~IgytAH~~~t 296 (738)
T PHA03368 228 AERVERFLRTVFNTPLFSDAA----VRHFRQRATVFLVPRRHGKTWFLV-PLIALALA------TFRGIKIGYTAHIRKA 296 (738)
T ss_pred HHHHHHHHHHHcCCccccHHH----HHHhhccceEEEecccCCchhhHH-HHHHHHHH------hCCCCEEEEEcCcHHH
Confidence 344555566667776665422 223345667888899999999754 77765553 1358899999999999
Q ss_pred HHHHHHHHHHhhccC-CCcceEEEeCCCchHHHHHHHhcC--CcEEEECchhHHHhhhccCCcccccceEEEEecchhhh
Q psy15524 479 ALQTLEIFTKLCKSF-TWIVPSWLTGGEKMKSEKARIRKG--ISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRIL 555 (930)
Q Consensus 479 a~Q~~~~~~~~~~~~-~~~~~~~~~gg~~~~~~~~~~~~~--~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~l~ 555 (930)
+..+++++...+... +......+.| +.. .-....| ..|.++| .++.....-..++++|+|||+-+-
T Consensus 297 s~~vF~eI~~~le~~f~~~~v~~vkG-e~I---~i~f~nG~kstI~FaS-------arntNsiRGqtfDLLIVDEAqFIk 365 (738)
T PHA03368 297 TEPVFEEIGARLRQWFGASRVDHVKG-ETI---SFSFPDGSRSTIVFAS-------SHNTNGIRGQDFNLLFVDEANFIR 365 (738)
T ss_pred HHHHHHHHHHHHhhhcchhheeeecC-cEE---EEEecCCCccEEEEEe-------ccCCCCccCCcccEEEEechhhCC
Confidence 999999998876632 1111111111 110 0001112 1344432 122333445689999999999886
Q ss_pred hcCcHHHHHHHHHHHhhcCccceEEEEccccCH
Q psy15524 556 DQGYERDIAEFLEILKKQKPQFQSILLSATLTP 588 (930)
Q Consensus 556 ~~g~~~~l~~i~~~l~~~~~~~q~vl~SAT~~~ 588 (930)
+ +.+..++-.+.. .+.+++++|.|.+.
T Consensus 366 ~----~al~~ilp~l~~--~n~k~I~ISS~Ns~ 392 (738)
T PHA03368 366 P----DAVQTIMGFLNQ--TNCKIIFVSSTNTG 392 (738)
T ss_pred H----HHHHHHHHHHhc--cCccEEEEecCCCC
Confidence 5 344555555544 27889999988654
|
|
| >COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.58 E-value=0.19 Score=53.38 Aligned_cols=64 Identities=20% Similarity=0.261 Sum_probs=48.4
Q ss_pred CCCccCcHHHHHHHHHhhcCC--cEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHH
Q psy15524 1 MNITQVTTVQQLSIQPILDGG--DVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELA 70 (930)
Q Consensus 1 ~g~~~l~~~Q~~ai~~~~~g~--~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~ 70 (930)
+|+...+-.|.-|+..++... =+.+.++-|||||+.++.+.+......+. -.+.+|--|+..+-
T Consensus 224 wGi~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~------y~KiiVtRp~vpvG 289 (436)
T COG1875 224 WGIRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLERKR------YRKIIVTRPTVPVG 289 (436)
T ss_pred hccCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHHhh------hceEEEecCCcCcc
Confidence 478777888999999888653 27788999999999999888887766332 23477777876654
|
|
| >KOG0989|consensus | Back alignment and domain information |
|---|
Probab=94.55 E-value=0.22 Score=51.72 Aligned_cols=45 Identities=18% Similarity=0.266 Sum_probs=29.5
Q ss_pred cCCCccEEEEcccccccccCcHHHHHHHHHHHhhcCCCceEEEEEeecC
Q psy15524 130 KFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLT 178 (930)
Q Consensus 130 ~l~~l~~vViDE~h~~~~~~~~~~~~~i~~~l~~~~~~~~~i~lSAT~~ 178 (930)
....++.+|+||||.|.... ...+.+.+.......++++....++
T Consensus 126 ~~~~fKiiIlDEcdsmtsda----q~aLrr~mE~~s~~trFiLIcnyls 170 (346)
T KOG0989|consen 126 PCPPFKIIILDECDSMTSDA----QAALRRTMEDFSRTTRFILICNYLS 170 (346)
T ss_pred CCCcceEEEEechhhhhHHH----HHHHHHHHhccccceEEEEEcCChh
Confidence 34667999999999997433 2333344444445667888777664
|
|
| >cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs | Back alignment and domain information |
|---|
Probab=94.53 E-value=0.44 Score=47.40 Aligned_cols=48 Identities=21% Similarity=0.169 Sum_probs=31.3
Q ss_pred EEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHH
Q psy15524 23 VLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKL 80 (930)
Q Consensus 23 ~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~ 80 (930)
+++.+|+|+|||...+--+...+. .|..++|++. .+-..++.+.+..+
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~---------~g~~v~~~s~-e~~~~~~~~~~~~~ 49 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLA---------RGEPGLYVTL-EESPEELIENAESL 49 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHH---------CCCcEEEEEC-CCCHHHHHHHHHHc
Confidence 689999999999865544444432 2445777764 34566666666555
|
A related protein is found in archaea. |
| >COG3421 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.50 E-value=0.063 Score=60.14 Aligned_cols=146 Identities=17% Similarity=0.181 Sum_probs=77.2
Q ss_pred EEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHHhh-hcCCceeEEeeCCCchHH---
Q psy15524 25 VRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCK-SFTWIVPSWLTGGEKMKS--- 100 (930)
Q Consensus 25 v~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~-~~~~~~~~~~~g~~~~~~--- 100 (930)
..+.||||||++..--++...... -..-|+.|.....+.-...-+..-.. .+- ..-...+++.....
T Consensus 2 f~matgsgkt~~ma~lil~~y~kg--------yr~flffvnq~nilekt~~nftd~~s~kyl-f~e~i~~~d~~i~ikkv 72 (812)
T COG3421 2 FEMATGSGKTLVMAGLILECYKKG--------YRNFLFFVNQANILEKTKLNFTDSVSSKYL-FSENININDENIEIKKV 72 (812)
T ss_pred cccccCCChhhHHHHHHHHHHHhc--------hhhEEEEecchhHHHHHHhhcccchhhhHh-hhhhhhcCCceeeeeee
Confidence 467899999998777777665431 12256666554443322222211100 000 00111222222111
Q ss_pred -HHHHhcCCCcEEEEChHHHHHHHhcCC--Ccc---CCCccEE-EEcccccccccC---------cHHHHHHHHHHHhhc
Q psy15524 101 -EKARIRKGISILVATPGRLLDHCKHTE--TLK---FSKVEHL-VLDEADRILDQG---------YERDIAEFLEILKKQ 164 (930)
Q Consensus 101 -~~~~l~~~~~Ilv~Tp~~l~~~l~~~~--~~~---l~~l~~v-ViDE~h~~~~~~---------~~~~~~~i~~~l~~~ 164 (930)
.......+..|.++|.+.|...+.+.. .+. +.+.++| +=||+|++-..- -...+...+......
T Consensus 73 n~fsehnd~iei~fttiq~l~~d~~~~ken~itledl~~~klvfl~deahhln~~tkkk~~de~~~~~~we~~v~la~~~ 152 (812)
T COG3421 73 NNFSEHNDAIEIYFTTIQGLFSDFTRAKENAITLEDLKDQKLVFLADEAHHLNTETKKKLNDEASEKRNWESVVKLALEQ 152 (812)
T ss_pred cccCccCCceEEEEeehHHHHHHHHhhccccccHhhHhhCceEEEechhhhhhhhhhhhcccHHHHHhhHHHHHHHHHhc
Confidence 011134457899999999987765532 233 4455554 669999986422 112233334333445
Q ss_pred CCCceEEEEEeecCC
Q psy15524 165 KPQFQSILLSATLTP 179 (930)
Q Consensus 165 ~~~~~~i~lSAT~~~ 179 (930)
+++--++.+|||.+.
T Consensus 153 nkd~~~lef~at~~k 167 (812)
T COG3421 153 NKDNLLLEFSATIPK 167 (812)
T ss_pred CCCceeehhhhcCCc
Confidence 566678889999974
|
|
| >PRK08116 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=94.47 E-value=0.54 Score=49.72 Aligned_cols=44 Identities=25% Similarity=0.324 Sum_probs=27.7
Q ss_pred CcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHH
Q psy15524 430 GDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTL 483 (930)
Q Consensus 430 ~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~ 483 (930)
..+++.+++|+|||.. +.++.+.+.. .+..++++ +..+|..++.
T Consensus 115 ~gl~l~G~~GtGKThL-a~aia~~l~~--------~~~~v~~~-~~~~ll~~i~ 158 (268)
T PRK08116 115 VGLLLWGSVGTGKTYL-AACIANELIE--------KGVPVIFV-NFPQLLNRIK 158 (268)
T ss_pred ceEEEECCCCCCHHHH-HHHHHHHHHH--------cCCeEEEE-EHHHHHHHHH
Confidence 3499999999999986 3456666554 14445554 4455554443
|
|
| >PRK14712 conjugal transfer nickase/helicase TraI; Provisional | Back alignment and domain information |
|---|
Probab=94.44 E-value=0.49 Score=61.18 Aligned_cols=65 Identities=20% Similarity=0.248 Sum_probs=46.4
Q ss_pred CCCHHHHHhHHhhhcCCc--EEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHH
Q psy15524 414 QVTTVQQLSIQPILDGGD--VLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTL 483 (930)
Q Consensus 414 ~~~~iQ~~~i~~il~~~d--~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~ 483 (930)
.+++-|.+|+..++.+.| +++.+..|+|||.. +-.++..+... ....+..++.++||-.-+.++.
T Consensus 835 ~Lt~~Qr~Av~~iLts~dr~~~IqG~AGTGKTT~-l~~i~~~~~~l----~e~~g~~V~glAPTgkAa~~L~ 901 (1623)
T PRK14712 835 KLTSGQRAATRMILETSDRFTVVQGYAGVGKTTQ-FRAVMSAVNML----PESERPRVVGLGPTHRAVGEMR 901 (1623)
T ss_pred ccCHHHHHHHHHHHhCCCceEEEEeCCCCCHHHH-HHHHHHHHHHH----hhccCceEEEEechHHHHHHHH
Confidence 689999999999997644 89999999999986 22333332211 0124567889999977776553
|
|
| >PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA | Back alignment and domain information |
|---|
Probab=94.42 E-value=0.074 Score=62.34 Aligned_cols=156 Identities=19% Similarity=0.120 Sum_probs=88.7
Q ss_pred CCCHHHHHhHHhhhcC--CcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHH-HHHHHhh
Q psy15524 414 QVTTVQQLSIQPILDG--GDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTL-EIFTKLC 490 (930)
Q Consensus 414 ~~~~iQ~~~i~~il~~--~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~-~~~~~~~ 490 (930)
..+|+|.+.+..+-.. +.+++..++-+|||.+.+. ++-.... .+...++++.||.++|.+.. +.+..+.
T Consensus 16 ~~~Py~~eimd~~~~~~v~~Vv~~k~aQ~GkT~~~~n-~~g~~i~-------~~P~~~l~v~Pt~~~a~~~~~~rl~Pmi 87 (557)
T PF05876_consen 16 DRTPYLREIMDALSDPSVREVVVMKSAQVGKTELLLN-WIGYSID-------QDPGPMLYVQPTDDAAKDFSKERLDPMI 87 (557)
T ss_pred CCChhHHHHHHhcCCcCccEEEEEEcchhhHhHHHHh-hceEEEE-------eCCCCEEEEEEcHHHHHHHHHHHHHHHH
Confidence 5678888888777654 4699999999999996433 3322222 12345899999999999887 5666666
Q ss_pred ccCCCcceEEEeC----CCchHHHHHHHhcCCcEEEECchhHHHhhhccCCcccccceEEEEecchhhhhc--CcHHHHH
Q psy15524 491 KSFTWIVPSWLTG----GEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQ--GYERDIA 564 (930)
Q Consensus 491 ~~~~~~~~~~~~g----g~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~l~~~--g~~~~l~ 564 (930)
...+.+.. .+.. ............ |..+.++.-+ +...+.-..++++++||+|.+.+. +=+..+.
T Consensus 88 ~~sp~l~~-~~~~~~~~~~~~t~~~k~f~-gg~l~~~ga~-------S~~~l~s~~~r~~~~DEvD~~p~~~~~eGdp~~ 158 (557)
T PF05876_consen 88 RASPVLRR-KLSPSKSRDSGNTILYKRFP-GGFLYLVGAN-------SPSNLRSRPARYLLLDEVDRYPDDVGGEGDPVE 158 (557)
T ss_pred HhCHHHHH-HhCchhhcccCCchhheecC-CCEEEEEeCC-------CCcccccCCcCEEEEechhhccccCccCCCHHH
Confidence 55443321 1222 111111112222 4455554421 123344567899999999998532 2234444
Q ss_pred HHHHHHhhcCccceEEEEccccC
Q psy15524 565 EFLEILKKQKPQFQSILLSATLT 587 (930)
Q Consensus 565 ~i~~~l~~~~~~~q~vl~SAT~~ 587 (930)
....+......... +++..|++
T Consensus 159 la~~R~~tf~~~~K-~~~~STPt 180 (557)
T PF05876_consen 159 LAEKRTKTFGSNRK-ILRISTPT 180 (557)
T ss_pred HHHHHHhhhccCcE-EEEeCCCC
Confidence 44444444322333 44444544
|
The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities []. |
| >cd01120 RecA-like_NTPases RecA-like NTPases | Back alignment and domain information |
|---|
Probab=94.41 E-value=0.71 Score=44.40 Aligned_cols=38 Identities=29% Similarity=0.288 Sum_probs=23.7
Q ss_pred EEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHH
Q psy15524 432 VLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTREL 478 (930)
Q Consensus 432 ~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreL 478 (930)
+++.+++|+|||.....-+.. +.. .+..++++.....+
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~-~~~--------~~~~v~~~~~e~~~ 39 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALN-IAT--------KGGKVVYVDIEEEI 39 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHH-HHh--------cCCEEEEEECCcch
Confidence 578999999999864333332 221 35567777665443
|
This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion. |
| >TIGR00362 DnaA chromosomal replication initiator protein DnaA | Back alignment and domain information |
|---|
Probab=94.38 E-value=0.31 Score=55.22 Aligned_cols=42 Identities=17% Similarity=0.172 Sum_probs=26.9
Q ss_pred cEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHH
Q psy15524 431 DVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELAL 480 (930)
Q Consensus 431 d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~ 480 (930)
.+++.||+|+|||.. +..+...+... ..+..++++.. .++..
T Consensus 138 ~l~l~G~~G~GKThL-~~ai~~~l~~~------~~~~~v~yi~~-~~~~~ 179 (405)
T TIGR00362 138 PLFIYGGVGLGKTHL-LHAIGNEILEN------NPNAKVVYVSS-EKFTN 179 (405)
T ss_pred eEEEECCCCCcHHHH-HHHHHHHHHHh------CCCCcEEEEEH-HHHHH
Confidence 488999999999976 34555555431 23566777753 34443
|
DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006). |
| >smart00382 AAA ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Probab=94.36 E-value=0.059 Score=50.43 Aligned_cols=42 Identities=26% Similarity=0.271 Sum_probs=25.5
Q ss_pred CCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHH
Q psy15524 429 GGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELA 479 (930)
Q Consensus 429 ~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa 479 (930)
+..+++.+|+|+|||.... .+...+.. .+..++++.+.....
T Consensus 2 ~~~~~l~G~~G~GKTtl~~-~l~~~~~~--------~~~~~~~~~~~~~~~ 43 (148)
T smart00382 2 GEVILIVGPPGSGKTTLAR-ALARELGP--------PGGGVIYIDGEDILE 43 (148)
T ss_pred CCEEEEECCCCCcHHHHHH-HHHhccCC--------CCCCEEEECCEEccc
Confidence 4568999999999998632 22322211 123467777765443
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. |
| >PRK12377 putative replication protein; Provisional | Back alignment and domain information |
|---|
Probab=94.34 E-value=0.49 Score=49.20 Aligned_cols=59 Identities=19% Similarity=0.263 Sum_probs=33.9
Q ss_pred cHHHHHHHHHhh-------c-CCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHH
Q psy15524 7 TTVQQLSIQPIL-------D-GGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLE 75 (930)
Q Consensus 7 ~~~Q~~ai~~~~-------~-g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~ 75 (930)
.+-|+.++..+. . ..++++.+|+|+|||..... +...+.. .+. .++.++..+|..++..
T Consensus 80 ~~~~~~a~~~a~~~a~~~~~~~~~l~l~G~~GtGKThLa~A-Ia~~l~~--------~g~-~v~~i~~~~l~~~l~~ 146 (248)
T PRK12377 80 NDGQRYALSQAKSIADELMTGCTNFVFSGKPGTGKNHLAAA-IGNRLLA--------KGR-SVIVVTVPDVMSRLHE 146 (248)
T ss_pred ChhHHHHHHHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHH-HHHHHHH--------cCC-CeEEEEHHHHHHHHHH
Confidence 456665554322 2 25799999999999986443 3344433 122 3344455666665543
|
|
| >TIGR02881 spore_V_K stage V sporulation protein K | Back alignment and domain information |
|---|
Probab=94.33 E-value=0.25 Score=52.30 Aligned_cols=21 Identities=24% Similarity=0.287 Sum_probs=16.8
Q ss_pred CcEEEEcCCCChHHHHHHHHH
Q psy15524 21 GDVLVRSQTGSGKTLAYAIPI 41 (930)
Q Consensus 21 ~~~lv~apTGsGKT~~~~l~~ 41 (930)
.++++.+|+|+|||..+-.-+
T Consensus 43 ~~vll~GppGtGKTtlA~~ia 63 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVARILG 63 (261)
T ss_pred ceEEEEcCCCCCHHHHHHHHH
Confidence 468999999999998754443
|
Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group. |
| >PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=94.31 E-value=0.38 Score=52.96 Aligned_cols=25 Identities=32% Similarity=0.333 Sum_probs=18.8
Q ss_pred cCCcEEEEccCCCchhHHhhHHHHH
Q psy15524 428 DGGDVLVRSQTGSGKTLAYAIPIIQ 452 (930)
Q Consensus 428 ~~~d~lv~a~TGsGKTl~~~lp~l~ 452 (930)
.|..+++.+|||+|||.+...-+..
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~ 160 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAAR 160 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3567899999999999975444433
|
|
| >cd01120 RecA-like_NTPases RecA-like NTPases | Back alignment and domain information |
|---|
Probab=94.31 E-value=0.89 Score=43.72 Aligned_cols=39 Identities=28% Similarity=0.232 Sum_probs=24.8
Q ss_pred EEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHH
Q psy15524 23 VLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELA 70 (930)
Q Consensus 23 ~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~ 70 (930)
+++.+|+|+|||.....-+..... .+..++++.....+.
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~---------~~~~v~~~~~e~~~~ 40 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIAT---------KGGKVVYVDIEEEIE 40 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHh---------cCCEEEEEECCcchH
Confidence 689999999999865444333221 244577777654443
|
This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion. |
| >PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase) | Back alignment and domain information |
|---|
Probab=94.30 E-value=0.14 Score=59.42 Aligned_cols=150 Identities=15% Similarity=0.123 Sum_probs=85.1
Q ss_pred HHHHHhHHhhhc-----C----CcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHHH
Q psy15524 417 TVQQLSIQPILD-----G----GDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFT 487 (930)
Q Consensus 417 ~iQ~~~i~~il~-----~----~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~ 487 (930)
|+|+-.+..++. | +.+++.-|=|.|||.....-++-.+.- ....+..+++.+++++-|..+++.+.
T Consensus 1 PwQ~fi~~~i~G~~~~~g~rrf~~~~l~v~RkNGKS~l~a~i~ly~l~~-----~g~~~~~i~~~A~~~~QA~~~f~~~~ 75 (477)
T PF03354_consen 1 PWQKFILRSIFGWRKDDGRRRFREVYLEVPRKNGKSTLAAAIALYMLFL-----DGEPGAEIYCAANTRDQAKIVFDEAK 75 (477)
T ss_pred CcHHHHHHHHhceEcCCCCEEEEEEEEEEcCccCccHHHHHHHHHHHhc-----CCccCceEEEEeCCHHHHHHHHHHHH
Confidence 567776666662 2 358888999999998655444433332 12357789999999999999999999
Q ss_pred HhhccCCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhh-ccCCcccccceEEEEecchhhhhcCcHHHHHHH
Q psy15524 488 KLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCK-HTETLKFSKVEHLVLDEADRILDQGYERDIAEF 566 (930)
Q Consensus 488 ~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~-~~~~~~~~~l~~lVlDEah~l~~~g~~~~l~~i 566 (930)
.+....+...... + ...... ....|.....+.....+. ......-.+..++|+||+|.+-+. ..+..+
T Consensus 76 ~~i~~~~~l~~~~---~----~~~~~~-~~~~i~~~~~~s~~~~~s~~~~~~dG~~~~~~i~DE~h~~~~~---~~~~~l 144 (477)
T PF03354_consen 76 KMIEASPELRKRK---K----PKIIKS-NKKEIEFPKTGSFFKALSSDADSLDGLNPSLAIFDELHAHKDD---ELYDAL 144 (477)
T ss_pred HHHHhChhhccch---h----hhhhhh-hceEEEEcCCCcEEEEEecCCCCccCCCCceEEEeCCCCCCCH---HHHHHH
Confidence 8876533221100 0 000000 112333332233222222 222333346789999999977653 344444
Q ss_pred HHHHhhcCccceEEEEc
Q psy15524 567 LEILKKQKPQFQSILLS 583 (930)
Q Consensus 567 ~~~l~~~~~~~q~vl~S 583 (930)
...+.. .++.+++.+|
T Consensus 145 ~~g~~~-r~~pl~~~IS 160 (477)
T PF03354_consen 145 ESGMGA-RPNPLIIIIS 160 (477)
T ss_pred Hhhhcc-CCCceEEEEe
Confidence 444443 3466666554
|
The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. |
| >PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication | Back alignment and domain information |
|---|
Probab=94.25 E-value=0.56 Score=47.99 Aligned_cols=106 Identities=16% Similarity=0.218 Sum_probs=60.9
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHHhhhcCCceeEEeeCCCchHHH
Q psy15524 22 DVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSE 101 (930)
Q Consensus 22 ~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 101 (930)
-++++||+|+|||.. +-++.+.+... .++.+++++.. .+.+......++.
T Consensus 36 ~l~l~G~~G~GKTHL-L~Ai~~~~~~~------~~~~~v~y~~~-~~f~~~~~~~~~~---------------------- 85 (219)
T PF00308_consen 36 PLFLYGPSGLGKTHL-LQAIANEAQKQ------HPGKRVVYLSA-EEFIREFADALRD---------------------- 85 (219)
T ss_dssp EEEEEESTTSSHHHH-HHHHHHHHHHH------CTTS-EEEEEH-HHHHHHHHHHHHT----------------------
T ss_pred ceEEECCCCCCHHHH-HHHHHHHHHhc------cccccceeecH-HHHHHHHHHHHHc----------------------
Confidence 389999999999994 44555555432 12344555543 3444443333221
Q ss_pred HHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccC-cHHHHHHHHHHHhhcCCCceEEEEEeecCC
Q psy15524 102 KARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQG-YERDIAEFLEILKKQKPQFQSILLSATLTP 179 (930)
Q Consensus 102 ~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~-~~~~~~~i~~~l~~~~~~~~~i~lSAT~~~ 179 (930)
...+.+.+. +...++++||.+|.+.+.. ....+-.++..+...+ .++|+.|..+|.
T Consensus 86 ------------~~~~~~~~~--------~~~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~--k~li~ts~~~P~ 142 (219)
T PF00308_consen 86 ------------GEIEEFKDR--------LRSADLLIIDDIQFLAGKQRTQEELFHLFNRLIESG--KQLILTSDRPPS 142 (219)
T ss_dssp ------------TSHHHHHHH--------HCTSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTT--SEEEEEESS-TT
T ss_pred ------------ccchhhhhh--------hhcCCEEEEecchhhcCchHHHHHHHHHHHHHHhhC--CeEEEEeCCCCc
Confidence 023333333 3468999999999987542 4455666676666543 356666555554
|
DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A. |
| >PRK00149 dnaA chromosomal replication initiation protein; Reviewed | Back alignment and domain information |
|---|
Probab=94.24 E-value=0.34 Score=55.72 Aligned_cols=105 Identities=15% Similarity=0.239 Sum_probs=57.0
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHHhhhcCCceeEEeeCCCchHHH
Q psy15524 22 DVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSE 101 (930)
Q Consensus 22 ~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 101 (930)
.++++||+|+|||..... +.+.+... .++..++++ +..++..+....+...
T Consensus 150 ~l~l~G~~G~GKThL~~a-i~~~~~~~------~~~~~v~yi-~~~~~~~~~~~~~~~~--------------------- 200 (450)
T PRK00149 150 PLFIYGGVGLGKTHLLHA-IGNYILEK------NPNAKVVYV-TSEKFTNDFVNALRNN--------------------- 200 (450)
T ss_pred eEEEECCCCCCHHHHHHH-HHHHHHHh------CCCCeEEEE-EHHHHHHHHHHHHHcC---------------------
Confidence 589999999999986443 33444331 123445555 4455555443332110
Q ss_pred HHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccC-cHHHHHHHHHHHhhcCCCceEEEEEeecCC
Q psy15524 102 KARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQG-YERDIAEFLEILKKQKPQFQSILLSATLTP 179 (930)
Q Consensus 102 ~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~-~~~~~~~i~~~l~~~~~~~~~i~lSAT~~~ 179 (930)
+.+.+... +...++|||||+|.+.... ....+-.++..+.... .+ +.++++.++
T Consensus 201 -------------~~~~~~~~--------~~~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~--~~-iiits~~~p 255 (450)
T PRK00149 201 -------------TMEEFKEK--------YRSVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAG--KQ-IVLTSDRPP 255 (450)
T ss_pred -------------cHHHHHHH--------HhcCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCC--Cc-EEEECCCCH
Confidence 11222222 2357799999999886432 2344555555554433 23 455555443
|
|
| >PRK05642 DNA replication initiation factor; Validated | Back alignment and domain information |
|---|
Probab=94.23 E-value=0.3 Score=50.56 Aligned_cols=45 Identities=24% Similarity=0.434 Sum_probs=28.3
Q ss_pred ccceEEEEecchhhhhc-CcHHHHHHHHHHHhhcCccceEEEEccccCH
Q psy15524 541 SKVEHLVLDEADRILDQ-GYERDIAEFLEILKKQKPQFQSILLSATLTP 588 (930)
Q Consensus 541 ~~l~~lVlDEah~l~~~-g~~~~l~~i~~~l~~~~~~~q~vl~SAT~~~ 588 (930)
.+.+++|+|++|.+... .+...+..+++.+... +. .++++++.++
T Consensus 96 ~~~d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~--g~-~ilits~~~p 141 (234)
T PRK05642 96 EQYELVCLDDLDVIAGKADWEEALFHLFNRLRDS--GR-RLLLAASKSP 141 (234)
T ss_pred hhCCEEEEechhhhcCChHHHHHHHHHHHHHHhc--CC-EEEEeCCCCH
Confidence 34678999999987533 3455667777666531 33 4566666544
|
|
| >PRK08116 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=94.21 E-value=0.57 Score=49.55 Aligned_cols=25 Identities=36% Similarity=0.452 Sum_probs=18.8
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHHHh
Q psy15524 22 DVLVRSQTGSGKTLAYAIPIIQKLQE 47 (930)
Q Consensus 22 ~~lv~apTGsGKT~~~~l~~l~~l~~ 47 (930)
.++++|++|+|||..+. ++.+.+..
T Consensus 116 gl~l~G~~GtGKThLa~-aia~~l~~ 140 (268)
T PRK08116 116 GLLLWGSVGTGKTYLAA-CIANELIE 140 (268)
T ss_pred eEEEECCCCCCHHHHHH-HHHHHHHH
Confidence 49999999999998654 45555543
|
|
| >PRK14974 cell division protein FtsY; Provisional | Back alignment and domain information |
|---|
Probab=94.20 E-value=0.54 Score=51.18 Aligned_cols=54 Identities=15% Similarity=0.228 Sum_probs=34.7
Q ss_pred ccceEEEEecchhhh-hcCcHHHHHHHHHHHhhcCccceEEEEccccCHHHHHHHhhh
Q psy15524 541 SKVEHLVLDEADRIL-DQGYERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMT 597 (930)
Q Consensus 541 ~~l~~lVlDEah~l~-~~g~~~~l~~i~~~l~~~~~~~q~vl~SAT~~~~~~~l~~~~ 597 (930)
...++|++|.|.++. +..+...+..+.+.+ .+...++.++||..++..+.+..+
T Consensus 221 ~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~---~pd~~iLVl~a~~g~d~~~~a~~f 275 (336)
T PRK14974 221 RGIDVVLIDTAGRMHTDANLMDELKKIVRVT---KPDLVIFVGDALAGNDAVEQAREF 275 (336)
T ss_pred CCCCEEEEECCCccCCcHHHHHHHHHHHHhh---CCceEEEeeccccchhHHHHHHHH
Confidence 356799999999875 233444555554443 346677888998876655544443
|
|
| >COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=94.19 E-value=0.063 Score=55.52 Aligned_cols=47 Identities=26% Similarity=0.445 Sum_probs=34.9
Q ss_pred CCCCCCCCCCHHHHHHHHhcCCCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhh
Q psy15524 390 TSYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEM 457 (930)
Q Consensus 390 ~~f~~l~~l~~~~~~~l~~~~~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~ 457 (930)
.+|+++ ++|+.+.+.+....| =++|.+|||||||.+ +.+++..+.+.
T Consensus 106 ~~~e~L-glP~i~~~~~~~~~G-------------------LILVTGpTGSGKSTT-lAamId~iN~~ 152 (353)
T COG2805 106 PTLEEL-GLPPIVRELAESPRG-------------------LILVTGPTGSGKSTT-LAAMIDYINKH 152 (353)
T ss_pred CCHHHc-CCCHHHHHHHhCCCc-------------------eEEEeCCCCCcHHHH-HHHHHHHHhcc
Confidence 468888 888877764432111 289999999999987 77888888764
|
|
| >PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=94.15 E-value=1.1 Score=50.78 Aligned_cols=129 Identities=22% Similarity=0.243 Sum_probs=62.2
Q ss_pred CCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEc--cCHHHHHHHHHHHHHhhccCCCcceEEEeCCCc
Q psy15524 429 GGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIIL--PTRELALQTLEIFTKLCKSFTWIVPSWLTGGEK 506 (930)
Q Consensus 429 ~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~--PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~ 506 (930)
++.+++.+|||+|||.+..--+...... ..+.++.++. |.|.-+.++...+..... .+
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~-------~~g~~V~li~~D~~r~~a~eqL~~~a~~~~-vp------------ 280 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALL-------YGKKKVALITLDTYRIGAVEQLKTYAKIMG-IP------------ 280 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHh-------cCCCeEEEEECCccHHHHHHHHHHHHHHhC-Cc------------
Confidence 5668899999999998744333322211 1234455444 334333333333222211 00
Q ss_pred hHHHHHHHhcCCcEEEECchhHHHhhhccCCcccccceEEEEecchhhhhcCcHHHHHHHHHHHh-hcCccceEEEEccc
Q psy15524 507 MKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILK-KQKPQFQSILLSAT 585 (930)
Q Consensus 507 ~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~l~~~g~~~~l~~i~~~l~-~~~~~~q~vl~SAT 585 (930)
-..+.+|..+...+.. +.+.++|+||.+-+.... ...+..+...+. ...+....+++|||
T Consensus 281 ------------~~~~~~~~~l~~~l~~-----~~~~DlVlIDt~G~~~~d--~~~~~~L~~ll~~~~~~~~~~LVl~a~ 341 (424)
T PRK05703 281 ------------VEVVYDPKELAKALEQ-----LRDCDVILIDTAGRSQRD--KRLIEELKALIEFSGEPIDVYLVLSAT 341 (424)
T ss_pred ------------eEccCCHHhHHHHHHH-----hCCCCEEEEeCCCCCCCC--HHHHHHHHHHHhccCCCCeEEEEEECC
Confidence 0112344444444432 335789999988653211 122233333333 11233457888998
Q ss_pred cCH-HHHHHHhh
Q psy15524 586 LTP-AVQRLAGM 596 (930)
Q Consensus 586 ~~~-~~~~l~~~ 596 (930)
... .+.+....
T Consensus 342 ~~~~~l~~~~~~ 353 (424)
T PRK05703 342 TKYEDLKDIYKH 353 (424)
T ss_pred CCHHHHHHHHHH
Confidence 875 34444433
|
|
| >PRK07003 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=94.15 E-value=0.31 Score=57.67 Aligned_cols=39 Identities=18% Similarity=0.415 Sum_probs=25.3
Q ss_pred ccceEEEEecchhhhhcCcHHHHHHHHHHHhhcCccceEEEEc
Q psy15524 541 SKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLS 583 (930)
Q Consensus 541 ~~l~~lVlDEah~l~~~g~~~~l~~i~~~l~~~~~~~q~vl~S 583 (930)
.+.+++||||+|+|.... .+.+++.|....+...+|+.+
T Consensus 118 gr~KVIIIDEah~LT~~A----~NALLKtLEEPP~~v~FILaT 156 (830)
T PRK07003 118 ARFKVYMIDEVHMLTNHA----FNAMLKTLEEPPPHVKFILAT 156 (830)
T ss_pred CCceEEEEeChhhCCHHH----HHHHHHHHHhcCCCeEEEEEE
Confidence 457899999999987544 345566665544455555544
|
|
| >PRK05642 DNA replication initiation factor; Validated | Back alignment and domain information |
|---|
Probab=94.13 E-value=0.32 Score=50.34 Aligned_cols=46 Identities=24% Similarity=0.454 Sum_probs=29.3
Q ss_pred CCccEEEEccccccccc-CcHHHHHHHHHHHhhcCCCceEEEEEeecCCC
Q psy15524 132 SKVEHLVLDEADRILDQ-GYERDIAEFLEILKKQKPQFQSILLSATLTPA 180 (930)
Q Consensus 132 ~~l~~vViDE~h~~~~~-~~~~~~~~i~~~l~~~~~~~~~i~lSAT~~~~ 180 (930)
.+.+++|||++|.+... .....+-.+++.+...+ ..+.++++.++.
T Consensus 96 ~~~d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g---~~ilits~~~p~ 142 (234)
T PRK05642 96 EQYELVCLDDLDVIAGKADWEEALFHLFNRLRDSG---RRLLLAASKSPR 142 (234)
T ss_pred hhCCEEEEechhhhcCChHHHHHHHHHHHHHHhcC---CEEEEeCCCCHH
Confidence 35679999999987543 33455666666665433 456777766543
|
|
| >TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda | Back alignment and domain information |
|---|
Probab=94.08 E-value=0.31 Score=50.23 Aligned_cols=18 Identities=22% Similarity=0.320 Sum_probs=15.5
Q ss_pred CCcEEEEccCCCchhHHh
Q psy15524 429 GGDVLVRSQTGSGKTLAY 446 (930)
Q Consensus 429 ~~d~lv~a~TGsGKTl~~ 446 (930)
+..+++.+|+|+|||...
T Consensus 38 ~~~lll~G~~G~GKT~la 55 (226)
T TIGR03420 38 DRFLYLWGESGSGKSHLL 55 (226)
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 467999999999999864
|
Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP. |
| >PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication | Back alignment and domain information |
|---|
Probab=94.07 E-value=0.36 Score=49.44 Aligned_cols=106 Identities=17% Similarity=0.244 Sum_probs=63.3
Q ss_pred EEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHHHHhhccCCCcceEEEeCCCchHHHH
Q psy15524 432 VLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEK 511 (930)
Q Consensus 432 ~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~ 511 (930)
+++.+|+|+|||=. +-++...+.+. .++.+++++... +........+.. +
T Consensus 37 l~l~G~~G~GKTHL-L~Ai~~~~~~~------~~~~~v~y~~~~-~f~~~~~~~~~~---------------~------- 86 (219)
T PF00308_consen 37 LFLYGPSGLGKTHL-LQAIANEAQKQ------HPGKRVVYLSAE-EFIREFADALRD---------------G------- 86 (219)
T ss_dssp EEEEESTTSSHHHH-HHHHHHHHHHH------CTTS-EEEEEHH-HHHHHHHHHHHT---------------T-------
T ss_pred eEEECCCCCCHHHH-HHHHHHHHHhc------cccccceeecHH-HHHHHHHHHHHc---------------c-------
Confidence 89999999999974 55555555542 235667777653 454443333322 0
Q ss_pred HHHhcCCcEEEECchhHHHhhhccCCcccccceEEEEecchhhhhcC-cHHHHHHHHHHHhhcCccceEEEEccccCHH
Q psy15524 512 ARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQG-YERDIAEFLEILKKQKPQFQSILLSATLTPA 589 (930)
Q Consensus 512 ~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~l~~~g-~~~~l~~i~~~l~~~~~~~q~vl~SAT~~~~ 589 (930)
....+.+ .+...++++||.+|.+.... +...+..+++.+... +.++++.|...|..
T Consensus 87 ------------~~~~~~~--------~~~~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~--~k~li~ts~~~P~~ 143 (219)
T PF00308_consen 87 ------------EIEEFKD--------RLRSADLLIIDDIQFLAGKQRTQEELFHLFNRLIES--GKQLILTSDRPPSE 143 (219)
T ss_dssp ------------SHHHHHH--------HHCTSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHT--TSEEEEEESS-TTT
T ss_pred ------------cchhhhh--------hhhcCCEEEEecchhhcCchHHHHHHHHHHHHHHhh--CCeEEEEeCCCCcc
Confidence 0011111 13468899999999986542 456666677766553 45777777676654
|
DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A. |
| >smart00382 AAA ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Probab=94.02 E-value=0.14 Score=47.79 Aligned_cols=42 Identities=26% Similarity=0.222 Sum_probs=26.1
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHH
Q psy15524 20 GGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELA 70 (930)
Q Consensus 20 g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~ 70 (930)
+..+++.+|+|+|||.....-+ ..+.. .+..++++.+.....
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~-~~~~~--------~~~~~~~~~~~~~~~ 43 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALA-RELGP--------PGGGVIYIDGEDILE 43 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHH-hccCC--------CCCCEEEECCEEccc
Confidence 5679999999999998644333 22211 112367777665543
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. |
| >PRK08727 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=94.02 E-value=0.39 Score=49.74 Aligned_cols=18 Identities=22% Similarity=0.226 Sum_probs=15.1
Q ss_pred cEEEEcCCCChHHHHHHH
Q psy15524 22 DVLVRSQTGSGKTLAYAI 39 (930)
Q Consensus 22 ~~lv~apTGsGKT~~~~l 39 (930)
.++++||+|+|||.....
T Consensus 43 ~l~l~G~~G~GKThL~~a 60 (233)
T PRK08727 43 WLYLSGPAGTGKTHLALA 60 (233)
T ss_pred eEEEECCCCCCHHHHHHH
Confidence 499999999999986543
|
|
| >PRK06835 DNA replication protein DnaC; Validated | Back alignment and domain information |
|---|
Probab=94.02 E-value=1.4 Score=47.90 Aligned_cols=45 Identities=24% Similarity=0.275 Sum_probs=28.8
Q ss_pred CCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHH
Q psy15524 429 GGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTL 483 (930)
Q Consensus 429 ~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~ 483 (930)
+.++++.||||+|||.. +.++...+.. .|..|++++ ..+|..++.
T Consensus 183 ~~~Lll~G~~GtGKThL-a~aIa~~l~~--------~g~~V~y~t-~~~l~~~l~ 227 (329)
T PRK06835 183 NENLLFYGNTGTGKTFL-SNCIAKELLD--------RGKSVIYRT-ADELIEILR 227 (329)
T ss_pred CCcEEEECCCCCcHHHH-HHHHHHHHHH--------CCCeEEEEE-HHHHHHHHH
Confidence 47799999999999975 3344444443 255566554 456655443
|
|
| >PHA03333 putative ATPase subunit of terminase; Provisional | Back alignment and domain information |
|---|
Probab=94.02 E-value=0.74 Score=53.71 Aligned_cols=150 Identities=12% Similarity=0.107 Sum_probs=83.4
Q ss_pred CcHHHHHHHHHhh---cCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHHhh
Q psy15524 6 VTTVQQLSIQPIL---DGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCK 82 (930)
Q Consensus 6 l~~~Q~~ai~~~~---~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~ 82 (930)
|+|.=.+=|.+++ +.+-.++.+|-|.|||.+..+.+...+.. .+.+++|.+|...-+.+++++++....
T Consensus 170 ~~~~~~~~id~~~~~fkq~~tV~taPRqrGKS~iVgi~l~~La~f--------~Gi~IlvTAH~~~ts~evF~rv~~~le 241 (752)
T PHA03333 170 PSPRTLREIDRIFDEYGKCYTAATVPRRCGKTTIMAIILAAMISF--------LEIDIVVQAQRKTMCLTLYNRVETVVH 241 (752)
T ss_pred CChhhHHHHHHHHHHHhhcceEEEeccCCCcHHHHHHHHHHHHHh--------cCCeEEEECCChhhHHHHHHHHHHHHH
Confidence 3444444444443 45568889999999999866555544321 246699999999999999999888876
Q ss_pred hcCC------c-eeEEeeCCCc-hHHHH-HHhc-CCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCcHH
Q psy15524 83 SFTW------I-VPSWLTGGEK-MKSEK-ARIR-KGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYER 152 (930)
Q Consensus 83 ~~~~------~-~~~~~~g~~~-~~~~~-~~l~-~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~~~ 152 (930)
..+. . .+....|+.. ..-.. .... ++..|.+++ ...+...-...+++|||||..+-. +
T Consensus 242 ~lg~~~~fp~~~~iv~vkgg~E~I~f~~p~gak~G~sti~F~A--------rs~~s~RG~~~DLLIVDEAAfI~~----~ 309 (752)
T PHA03333 242 AYQHKPWFPEEFKIVTLKGTDENLEYISDPAAKEGKTTAHFLA--------SSPNAARGQNPDLVIVDEAAFVNP----G 309 (752)
T ss_pred HhccccccCCCceEEEeeCCeeEEEEecCcccccCcceeEEec--------ccCCCcCCCCCCEEEEECcccCCH----H
Confidence 4321 0 0111111110 00000 0000 002233322 122333334679999999998865 3
Q ss_pred HHHHHHHHHhhcCCCceEEEEEeec
Q psy15524 153 DIAEFLEILKKQKPQFQSILLSATL 177 (930)
Q Consensus 153 ~~~~i~~~l~~~~~~~~~i~lSAT~ 177 (930)
.+..++-.+.. .+.+++.+|-+-
T Consensus 310 ~l~aIlP~l~~--~~~k~IiISS~~ 332 (752)
T PHA03333 310 ALLSVLPLMAV--KGTKQIHISSPV 332 (752)
T ss_pred HHHHHHHHHcc--CCCceEEEeCCC
Confidence 44445544443 234666666665
|
|
| >PRK11054 helD DNA helicase IV; Provisional | Back alignment and domain information |
|---|
Probab=93.98 E-value=0.23 Score=59.66 Aligned_cols=70 Identities=17% Similarity=0.061 Sum_probs=53.3
Q ss_pred cCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHHh
Q psy15524 5 QVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLC 81 (930)
Q Consensus 5 ~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~ 81 (930)
.|++-|++|+-.- ..+++|.|..|||||.+...-+...+.... ..+.++|+++.|+..|..+.+++....
T Consensus 196 ~L~~~Q~~av~~~--~~~~lV~agaGSGKT~vl~~r~ayLl~~~~-----~~~~~IL~ltft~~AA~em~eRL~~~l 265 (684)
T PRK11054 196 PLNPSQARAVVNG--EDSLLVLAGAGSGKTSVLVARAGWLLARGQ-----AQPEQILLLAFGRQAAEEMDERIRERL 265 (684)
T ss_pred CCCHHHHHHHhCC--CCCeEEEEeCCCCHHHHHHHHHHHHHHhCC-----CCHHHeEEEeccHHHHHHHHHHHHHhc
Confidence 5899999988643 346899999999999987666655554311 124569999999999999999887653
|
|
| >TIGR02881 spore_V_K stage V sporulation protein K | Back alignment and domain information |
|---|
Probab=93.97 E-value=0.32 Score=51.43 Aligned_cols=18 Identities=22% Similarity=0.386 Sum_probs=15.2
Q ss_pred CcEEEEccCCCchhHHhh
Q psy15524 430 GDVLVRSQTGSGKTLAYA 447 (930)
Q Consensus 430 ~d~lv~a~TGsGKTl~~~ 447 (930)
.++++.+|+|+|||..+-
T Consensus 43 ~~vll~GppGtGKTtlA~ 60 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVAR 60 (261)
T ss_pred ceEEEEcCCCCCHHHHHH
Confidence 468999999999998643
|
Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group. |
| >PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ] | Back alignment and domain information |
|---|
Probab=93.93 E-value=0.97 Score=45.28 Aligned_cols=122 Identities=23% Similarity=0.339 Sum_probs=59.2
Q ss_pred EEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEc--cCHHHHHHHHHHHHHhhccCCCcceEEEeCCCchHH
Q psy15524 432 VLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIIL--PTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKS 509 (930)
Q Consensus 432 ~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~--PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~ 509 (930)
+++.+|||+|||.+..--+ .++.. . +.++.+++ ..|.=|.++.+.+.+.++ +.........
T Consensus 4 i~lvGptGvGKTTt~aKLA-a~~~~-------~-~~~v~lis~D~~R~ga~eQL~~~a~~l~-----vp~~~~~~~~--- 66 (196)
T PF00448_consen 4 IALVGPTGVGKTTTIAKLA-ARLKL-------K-GKKVALISADTYRIGAVEQLKTYAEILG-----VPFYVARTES--- 66 (196)
T ss_dssp EEEEESTTSSHHHHHHHHH-HHHHH-------T-T--EEEEEESTSSTHHHHHHHHHHHHHT-----EEEEESSTTS---
T ss_pred EEEECCCCCchHhHHHHHH-HHHhh-------c-cccceeecCCCCCccHHHHHHHHHHHhc-----cccchhhcch---
Confidence 6789999999999743333 33322 1 33444444 456666655555555443 1111111111
Q ss_pred HHHHHhcCCcEEEECchhH-HHhhhccCCcccccceEEEEecchhhhhc-CcHHHHHHHHHHHhhcCccceEEEEccccC
Q psy15524 510 EKARIRKGISILVATPGRL-LDHCKHTETLKFSKVEHLVLDEADRILDQ-GYERDIAEFLEILKKQKPQFQSILLSATLT 587 (930)
Q Consensus 510 ~~~~~~~~~~Ilv~Tp~rl-~~~l~~~~~~~~~~l~~lVlDEah~l~~~-g~~~~l~~i~~~l~~~~~~~q~vl~SAT~~ 587 (930)
.|..+ .+.+.. ...++.+++++|-+-+.... .....+..+++.+ .+..-.+.+|||..
T Consensus 67 --------------~~~~~~~~~l~~---~~~~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~---~~~~~~LVlsa~~~ 126 (196)
T PF00448_consen 67 --------------DPAEIAREALEK---FRKKGYDLVLIDTAGRSPRDEELLEELKKLLEAL---NPDEVHLVLSATMG 126 (196)
T ss_dssp --------------CHHHHHHHHHHH---HHHTTSSEEEEEE-SSSSTHHHHHHHHHHHHHHH---SSSEEEEEEEGGGG
T ss_pred --------------hhHHHHHHHHHH---HhhcCCCEEEEecCCcchhhHHHHHHHHHHhhhc---CCccceEEEecccC
Confidence 01111 112211 12345778888887654321 1223444444444 34556688899987
Q ss_pred HHH
Q psy15524 588 PAV 590 (930)
Q Consensus 588 ~~~ 590 (930)
...
T Consensus 127 ~~~ 129 (196)
T PF00448_consen 127 QED 129 (196)
T ss_dssp GHH
T ss_pred hHH
Confidence 653
|
SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A .... |
| >PTZ00112 origin recognition complex 1 protein; Provisional | Back alignment and domain information |
|---|
Probab=93.81 E-value=0.75 Score=55.15 Aligned_cols=44 Identities=20% Similarity=0.338 Sum_probs=25.6
Q ss_pred CCccEEEEcccccccccCcHHHHHHHHHHHhhcCCCceEEEEEee
Q psy15524 132 SKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSAT 176 (930)
Q Consensus 132 ~~l~~vViDE~h~~~~~~~~~~~~~i~~~l~~~~~~~~~i~lSAT 176 (930)
..+.+|||||+|.+... ....+..++++.......+-+||.|.+
T Consensus 868 r~v~IIILDEID~L~kK-~QDVLYnLFR~~~~s~SKLiLIGISNd 911 (1164)
T PTZ00112 868 RNVSILIIDEIDYLITK-TQKVLFTLFDWPTKINSKLVLIAISNT 911 (1164)
T ss_pred ccceEEEeehHhhhCcc-HHHHHHHHHHHhhccCCeEEEEEecCc
Confidence 45678999999999764 234455566554332223334444443
|
|
| >PRK10919 ATP-dependent DNA helicase Rep; Provisional | Back alignment and domain information |
|---|
Probab=93.80 E-value=0.16 Score=61.39 Aligned_cols=71 Identities=20% Similarity=0.126 Sum_probs=53.4
Q ss_pred CCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHHHHhhc
Q psy15524 414 QVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCK 491 (930)
Q Consensus 414 ~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~ 491 (930)
.+++-|.+|+.. ....++|.|..|||||.+..--+...+.... -+..++|+|+.|+..|.++.+.+.+++.
T Consensus 2 ~Ln~~Q~~av~~--~~g~~lV~AgpGSGKT~vL~~Ria~Li~~~~-----v~p~~IL~lTFT~kAA~em~~Rl~~~l~ 72 (672)
T PRK10919 2 RLNPGQQQAVEF--VTGPCLVLAGAGSGKTRVITNKIAHLIRGCG-----YQARHIAAVTFTNKAAREMKERVAQTLG 72 (672)
T ss_pred CCCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHHHhcC-----CCHHHeeeEechHHHHHHHHHHHHHHhC
Confidence 478899999876 3467899999999999985555554443211 1345799999999999999998887654
|
|
| >PTZ00112 origin recognition complex 1 protein; Provisional | Back alignment and domain information |
|---|
Probab=93.71 E-value=0.39 Score=57.44 Aligned_cols=29 Identities=17% Similarity=0.378 Sum_probs=19.7
Q ss_pred ccceEEEEecchhhhhcCcHHHHHHHHHHH
Q psy15524 541 SKVEHLVLDEADRILDQGYERDIAEFLEIL 570 (930)
Q Consensus 541 ~~l~~lVlDEah~l~~~g~~~~l~~i~~~l 570 (930)
....+|||||+|.+...+ ...+..+++..
T Consensus 868 r~v~IIILDEID~L~kK~-QDVLYnLFR~~ 896 (1164)
T PTZ00112 868 RNVSILIIDEIDYLITKT-QKVLFTLFDWP 896 (1164)
T ss_pred ccceEEEeehHhhhCccH-HHHHHHHHHHh
Confidence 346789999999997642 44555555543
|
|
| >PRK10919 ATP-dependent DNA helicase Rep; Provisional | Back alignment and domain information |
|---|
Probab=93.71 E-value=0.16 Score=61.30 Aligned_cols=70 Identities=20% Similarity=0.161 Sum_probs=54.3
Q ss_pred cCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHHh
Q psy15524 5 QVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLC 81 (930)
Q Consensus 5 ~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~ 81 (930)
.|++-|++|+... +..++|.|+.|||||.+...-+...+.... .+..++|+|+.|+.-|.++.+++....
T Consensus 2 ~Ln~~Q~~av~~~--~g~~lV~AgpGSGKT~vL~~Ria~Li~~~~-----v~p~~IL~lTFT~kAA~em~~Rl~~~l 71 (672)
T PRK10919 2 RLNPGQQQAVEFV--TGPCLVLAGAGSGKTRVITNKIAHLIRGCG-----YQARHIAAVTFTNKAAREMKERVAQTL 71 (672)
T ss_pred CCCHHHHHHHhCC--CCCEEEEecCCCCHHHHHHHHHHHHHHhcC-----CCHHHeeeEechHHHHHHHHHHHHHHh
Confidence 4899999998753 457889999999999997766666554311 123459999999999999999988764
|
|
| >PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=93.64 E-value=0.89 Score=49.93 Aligned_cols=120 Identities=19% Similarity=0.285 Sum_probs=64.0
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEc--ccHHHHHHHHHHHHHHhhhcCCceeEEeeCCCch
Q psy15524 21 GDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIIL--PTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKM 98 (930)
Q Consensus 21 ~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~--P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~ 98 (930)
+.+++++|||+|||.....-+.. +.. .+.++.++. |-+.-+.++... +....
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~~-L~~--------~GkkVglI~aDt~RiaAvEQLk~---yae~l-------------- 295 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAWQ-FHG--------KKKTVGFITTDHSRIGTVQQLQD---YVKTI-------------- 295 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHHH-HHH--------cCCcEEEEecCCcchHHHHHHHH---Hhhhc--------------
Confidence 46899999999999875554433 322 123344444 334333333222 22111
Q ss_pred HHHHHHhcCCCcEE-EEChHHHHHHHhcCCCccCCCccEEEEcccccccccCcHHHHHHHHHHHhhcCCCceEEEEEeec
Q psy15524 99 KSEKARIRKGISIL-VATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATL 177 (930)
Q Consensus 99 ~~~~~~l~~~~~Il-v~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~~~~~~~i~~~l~~~~~~~~~i~lSAT~ 177 (930)
++++. ..+|..+.+.+.... ...+.++|+||-+=+.... ...+..+...+....++-.++-+|||.
T Consensus 296 ---------gipv~v~~d~~~L~~aL~~lk--~~~~~DvVLIDTaGRs~kd--~~lm~EL~~~lk~~~PdevlLVLsATt 362 (436)
T PRK11889 296 ---------GFEVIAVRDEAAMTRALTYFK--EEARVDYILIDTAGKNYRA--SETVEEMIETMGQVEPDYICLTLSASM 362 (436)
T ss_pred ---------CCcEEecCCHHHHHHHHHHHH--hccCCCEEEEeCccccCcC--HHHHHHHHHHHhhcCCCeEEEEECCcc
Confidence 12232 346777666554211 0125789999988654422 234555555555444554566688876
Q ss_pred CC
Q psy15524 178 TP 179 (930)
Q Consensus 178 ~~ 179 (930)
..
T Consensus 363 k~ 364 (436)
T PRK11889 363 KS 364 (436)
T ss_pred Ch
Confidence 53
|
|
| >CHL00181 cbbX CbbX; Provisional | Back alignment and domain information |
|---|
Probab=93.56 E-value=0.6 Score=49.92 Aligned_cols=22 Identities=23% Similarity=0.202 Sum_probs=17.7
Q ss_pred CCcEEEEcCCCChHHHHHHHHH
Q psy15524 20 GGDVLVRSQTGSGKTLAYAIPI 41 (930)
Q Consensus 20 g~~~lv~apTGsGKT~~~~l~~ 41 (930)
|.++++.+|+|+|||.++-.-+
T Consensus 59 ~~~ill~G~pGtGKT~lAr~la 80 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVALKMA 80 (287)
T ss_pred CceEEEECCCCCCHHHHHHHHH
Confidence 4568999999999999765543
|
|
| >TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type | Back alignment and domain information |
|---|
Probab=93.55 E-value=0.32 Score=63.00 Aligned_cols=125 Identities=18% Similarity=0.111 Sum_probs=77.9
Q ss_pred CCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHHHHhhccC
Q psy15524 414 QVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSF 493 (930)
Q Consensus 414 ~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~ 493 (930)
++|+-|.++|.. .+++++|.|..|||||.+..--++..+... .+-.++++|+=|+..|.++.+++.+.+...
T Consensus 1 ~~t~~Q~~ai~~--~~~~~lv~A~AGsGKT~~lv~r~~~~~~~~------~~~~~il~~tFt~~aa~e~~~ri~~~l~~~ 72 (1232)
T TIGR02785 1 QWTDEQWQAIYT--RGQNILVSASAGSGKTAVLVERIIKKILRG------VDIDRLLVVTFTNAAAREMKERIEEALQKA 72 (1232)
T ss_pred CCCHHHHHHHhC--CCCCEEEEecCCCcHHHHHHHHHHHHHhcC------CCHhhEEEEeccHHHHHHHHHHHHHHHHHH
Confidence 368899999974 688999999999999998666666655431 122458999999999999888887765432
Q ss_pred CCcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhccCCcccc-cceEEEEecchh
Q psy15524 494 TWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFS-KVEHLVLDEADR 553 (930)
Q Consensus 494 ~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~-~l~~lVlDEah~ 553 (930)
.. .........+.+..-...-|+|-..+...+-+.....+. +-.+=|.||...
T Consensus 73 ~~-------~~p~~~~L~~q~~~~~~~~i~Tihsf~~~~~~~~~~~l~ldP~F~i~de~e~ 126 (1232)
T TIGR02785 73 LQ-------QEPNSKHLRRQLALLNTANISTLHSFCLKVIRKHYYLLDLDPSFRILTDTEQ 126 (1232)
T ss_pred Hh-------cCchhHHHHHHHhhccCCeEeeHHHHHHHHHHHhhhhcCCCCCceeCCHHHH
Confidence 11 011111112222223456789988775544332211111 113456888875
|
AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species. |
| >PRK13709 conjugal transfer nickase/helicase TraI; Provisional | Back alignment and domain information |
|---|
Probab=93.52 E-value=0.57 Score=61.39 Aligned_cols=64 Identities=20% Similarity=0.261 Sum_probs=47.2
Q ss_pred CCCHHHHHhHHhhhcCCc--EEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHH
Q psy15524 414 QVTTVQQLSIQPILDGGD--VLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQT 482 (930)
Q Consensus 414 ~~~~iQ~~~i~~il~~~d--~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~ 482 (930)
.+++.|..|+..++.+.| +++.+..|+|||.. +-.++..+... ....+..++.++||---|.++
T Consensus 967 ~Lt~~Q~~Av~~il~s~dr~~~I~G~AGTGKTT~-l~~v~~~~~~l----~~~~~~~V~glAPTgrAAk~L 1032 (1747)
T PRK13709 967 GLTSGQRAATRMILESTDRFTVVQGYAGVGKTTQ-FRAVMSAVNTL----PESERPRVVGLGPTHRAVGEM 1032 (1747)
T ss_pred CCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHH-HHHHHHHHHHh----hcccCceEEEECCcHHHHHHH
Confidence 689999999999998755 88999999999975 44444444321 012356788899998777654
|
|
| >KOG1001|consensus | Back alignment and domain information |
|---|
Probab=93.50 E-value=0.32 Score=57.74 Aligned_cols=117 Identities=20% Similarity=0.187 Sum_probs=69.5
Q ss_pred cEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHHHHhhccCCCcceEEEeCCCchHHH
Q psy15524 431 DVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSE 510 (930)
Q Consensus 431 d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~ 510 (930)
-.|+.-.-|-|||...+.-++..=...........+...||++|+ ++..|+...+.+.... ....+.+..| +..+
T Consensus 154 ggIladd~glgkt~~ti~l~l~~~~~~~~~~~~~~~kttLivcp~-s~~~qW~~elek~~~~-~~l~v~v~~g---r~kd 228 (674)
T KOG1001|consen 154 GGILADDMGLGKTVKTIALILKQKLKSKEEDRQKEFKTTLIVCPT-SLLTQWKTELEKVTEE-DKLSIYVYHG---RTKD 228 (674)
T ss_pred cceEeeccccchHHHHHHHHHhcccCCcchhhccccCceeEecch-HHHHHHHHHHhccCCc-cceEEEEecc---cccc
Confidence 467888889999997544443221110000011246678999997 7888898888554433 3344444444 1112
Q ss_pred HHHHhcCCcEEEECchhHHHhhhccCCcccccceEEEEecchhhhhcC
Q psy15524 511 KARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQG 558 (930)
Q Consensus 511 ~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~l~~~g 558 (930)
.....+.+|+++||+.+-. ..+..-..-.+|+||||.+-...
T Consensus 229 -~~el~~~dVVltTy~il~~-----~~l~~i~w~Riildea~~ikn~~ 270 (674)
T KOG1001|consen 229 -KSELNSYDVVLTTYDILKN-----SPLVKIKWLRIVLDEAHTIKNKD 270 (674)
T ss_pred -cchhcCCceEEeeHHHhhc-----ccccceeEEEEEeccccccCCcc
Confidence 1223468899999987753 11111234569999999987654
|
|
| >PRK06893 DNA replication initiation factor; Validated | Back alignment and domain information |
|---|
Probab=93.47 E-value=0.3 Score=50.45 Aligned_cols=48 Identities=21% Similarity=0.393 Sum_probs=30.7
Q ss_pred CCccEEEEccccccccc-CcHHHHHHHHHHHhhcCCCceEEEEEeecCCCc
Q psy15524 132 SKVEHLVLDEADRILDQ-GYERDIAEFLEILKKQKPQFQSILLSATLTPAT 181 (930)
Q Consensus 132 ~~l~~vViDE~h~~~~~-~~~~~~~~i~~~l~~~~~~~~~i~lSAT~~~~~ 181 (930)
.+.+++||||+|.+... .....+..++..+... ..+++.+|++.++..
T Consensus 90 ~~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~--~~~illits~~~p~~ 138 (229)
T PRK06893 90 EQQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQ--GKTLLLISADCSPHA 138 (229)
T ss_pred ccCCEEEEeChhhhcCChHHHHHHHHHHHHHHHc--CCcEEEEeCCCChHH
Confidence 46789999999988643 3344555566655442 235677888776543
|
|
| >PRK12323 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=93.46 E-value=0.69 Score=54.09 Aligned_cols=41 Identities=15% Similarity=0.328 Sum_probs=28.3
Q ss_pred ccceEEEEecchhhhhcCcHHHHHHHHHHHhhcCccceEEEEccc
Q psy15524 541 SKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSAT 585 (930)
Q Consensus 541 ~~l~~lVlDEah~l~~~g~~~~l~~i~~~l~~~~~~~q~vl~SAT 585 (930)
.+.+++||||+|+|.... .+.+++.|.....+..+|+.|--
T Consensus 123 gr~KViIIDEah~Ls~~A----aNALLKTLEEPP~~v~FILaTte 163 (700)
T PRK12323 123 GRFKVYMIDEVHMLTNHA----FNAMLKTLEEPPEHVKFILATTD 163 (700)
T ss_pred CCceEEEEEChHhcCHHH----HHHHHHhhccCCCCceEEEEeCC
Confidence 467899999999987543 45566777665556666665543
|
|
| >TIGR00362 DnaA chromosomal replication initiator protein DnaA | Back alignment and domain information |
|---|
Probab=93.46 E-value=0.57 Score=53.15 Aligned_cols=43 Identities=16% Similarity=0.193 Sum_probs=25.8
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHH
Q psy15524 22 DVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQ 72 (930)
Q Consensus 22 ~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q 72 (930)
.++++||+|+|||... ..+.+.+... .++..++++. ...+..+
T Consensus 138 ~l~l~G~~G~GKThL~-~ai~~~l~~~------~~~~~v~yi~-~~~~~~~ 180 (405)
T TIGR00362 138 PLFIYGGVGLGKTHLL-HAIGNEILEN------NPNAKVVYVS-SEKFTND 180 (405)
T ss_pred eEEEECCCCCcHHHHH-HHHHHHHHHh------CCCCcEEEEE-HHHHHHH
Confidence 4899999999999864 3444444431 1234466664 3344443
|
DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006). |
| >PRK08084 DNA replication initiation factor; Provisional | Back alignment and domain information |
|---|
Probab=93.45 E-value=0.43 Score=49.46 Aligned_cols=44 Identities=14% Similarity=0.296 Sum_probs=25.9
Q ss_pred ccEEEEccccccccc-CcHHHHHHHHHHHhhcCCCceEEEEEeecCC
Q psy15524 134 VEHLVLDEADRILDQ-GYERDIAEFLEILKKQKPQFQSILLSATLTP 179 (930)
Q Consensus 134 l~~vViDE~h~~~~~-~~~~~~~~i~~~l~~~~~~~~~i~lSAT~~~ 179 (930)
.++|+|||+|.+... .....+..++..+...+ ..+ +.+|++.++
T Consensus 98 ~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g-~~~-li~ts~~~p 142 (235)
T PRK08084 98 LSLVCIDNIECIAGDELWEMAIFDLYNRILESG-RTR-LLITGDRPP 142 (235)
T ss_pred CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcC-CCe-EEEeCCCCh
Confidence 478999999988643 34445556665554422 224 445555443
|
|
| >PRK14964 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=93.44 E-value=0.8 Score=52.42 Aligned_cols=40 Identities=23% Similarity=0.390 Sum_probs=27.2
Q ss_pred cccceEEEEecchhhhhcCcHHHHHHHHHHHhhcCccceEEEEc
Q psy15524 540 FSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLS 583 (930)
Q Consensus 540 ~~~l~~lVlDEah~l~~~g~~~~l~~i~~~l~~~~~~~q~vl~S 583 (930)
..+.+++||||+|.+... ....+++.+...++...+++.+
T Consensus 114 ~~~~KVvIIDEah~Ls~~----A~NaLLK~LEePp~~v~fIlat 153 (491)
T PRK14964 114 SSKFKVYIIDEVHMLSNS----AFNALLKTLEEPAPHVKFILAT 153 (491)
T ss_pred cCCceEEEEeChHhCCHH----HHHHHHHHHhCCCCCeEEEEEe
Confidence 357889999999988653 3456677777655455555543
|
|
| >PRK14086 dnaA chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
Probab=93.42 E-value=1.9 Score=50.47 Aligned_cols=49 Identities=14% Similarity=0.251 Sum_probs=30.4
Q ss_pred cccceEEEEecchhhhhcC-cHHHHHHHHHHHhhcCccceEEEEccccCHHH
Q psy15524 540 FSKVEHLVLDEADRILDQG-YERDIAEFLEILKKQKPQFQSILLSATLTPAV 590 (930)
Q Consensus 540 ~~~l~~lVlDEah~l~~~g-~~~~l~~i~~~l~~~~~~~q~vl~SAT~~~~~ 590 (930)
+.++++|||||+|.+.... ....+..+++.+... +.++|+.|-..+..+
T Consensus 375 y~~~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~--gk~IIITSd~~P~eL 424 (617)
T PRK14086 375 YREMDILLVDDIQFLEDKESTQEEFFHTFNTLHNA--NKQIVLSSDRPPKQL 424 (617)
T ss_pred hhcCCEEEEehhccccCCHHHHHHHHHHHHHHHhc--CCCEEEecCCChHhh
Confidence 3457899999999886433 345566666666542 456666555544433
|
|
| >PRK14087 dnaA chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
Probab=93.41 E-value=0.67 Score=52.98 Aligned_cols=105 Identities=11% Similarity=0.145 Sum_probs=58.6
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHHhhhcCCceeEEeeCCCchHHH
Q psy15524 22 DVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSE 101 (930)
Q Consensus 22 ~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 101 (930)
.++++|++|+|||... -.+.+.+... .++.+++++.+ .++..++...+....
T Consensus 143 pl~i~G~~G~GKTHLl-~Ai~~~l~~~------~~~~~v~yv~~-~~f~~~~~~~l~~~~-------------------- 194 (450)
T PRK14087 143 PLFIYGESGMGKTHLL-KAAKNYIESN------FSDLKVSYMSG-DEFARKAVDILQKTH-------------------- 194 (450)
T ss_pred ceEEECCCCCcHHHHH-HHHHHHHHHh------CCCCeEEEEEH-HHHHHHHHHHHHHhh--------------------
Confidence 4899999999999653 4444544431 22445666554 566665554442200
Q ss_pred HHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEccccccccc-CcHHHHHHHHHHHhhcCCCceEEEEEee
Q psy15524 102 KARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQ-GYERDIAEFLEILKKQKPQFQSILLSAT 176 (930)
Q Consensus 102 ~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~-~~~~~~~~i~~~l~~~~~~~~~i~lSAT 176 (930)
...+.+... +.++++|||||+|.+... .....+..++..+.... -|+|+.|-.
T Consensus 195 ------------~~~~~~~~~--------~~~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~--k~iIltsd~ 248 (450)
T PRK14087 195 ------------KEIEQFKNE--------ICQNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIEND--KQLFFSSDK 248 (450)
T ss_pred ------------hHHHHHHHH--------hccCCEEEEeccccccCCHHHHHHHHHHHHHHHHcC--CcEEEECCC
Confidence 011222221 346789999999988542 23455666666665443 244444433
|
|
| >PRK00411 cdc6 cell division control protein 6; Reviewed | Back alignment and domain information |
|---|
Probab=93.41 E-value=0.55 Score=53.10 Aligned_cols=25 Identities=28% Similarity=0.489 Sum_probs=18.7
Q ss_pred CcEEEEccCCCchhHHhhHHHHHHHH
Q psy15524 430 GDVLVRSQTGSGKTLAYAIPIIQKLQ 455 (930)
Q Consensus 430 ~d~lv~a~TGsGKTl~~~lp~l~~l~ 455 (930)
.++++.||+|+|||.+ +--++..+.
T Consensus 56 ~~~lI~G~~GtGKT~l-~~~v~~~l~ 80 (394)
T PRK00411 56 LNVLIYGPPGTGKTTT-VKKVFEELE 80 (394)
T ss_pred CeEEEECCCCCCHHHH-HHHHHHHHH
Confidence 5699999999999986 444444443
|
|
| >COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.25 E-value=0.6 Score=51.61 Aligned_cols=21 Identities=24% Similarity=0.517 Sum_probs=16.9
Q ss_pred CcEEEEcCCCChHHHHHHHHH
Q psy15524 21 GDVLVRSQTGSGKTLAYAIPI 41 (930)
Q Consensus 21 ~~~lv~apTGsGKT~~~~l~~ 41 (930)
.|+++.+|||+|||.+.-..+
T Consensus 43 ~n~~iyG~~GTGKT~~~~~v~ 63 (366)
T COG1474 43 SNIIIYGPTGTGKTATVKFVM 63 (366)
T ss_pred ccEEEECCCCCCHhHHHHHHH
Confidence 479999999999998744443
|
|
| >COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.20 E-value=0.49 Score=52.26 Aligned_cols=26 Identities=27% Similarity=0.569 Sum_probs=19.8
Q ss_pred CcEEEEccCCCchhHHhhHHHHHHHHh
Q psy15524 430 GDVLVRSQTGSGKTLAYAIPIIQKLQE 456 (930)
Q Consensus 430 ~d~lv~a~TGsGKTl~~~lp~l~~l~~ 456 (930)
.++++-++||+|||.+ .--+++.+..
T Consensus 43 ~n~~iyG~~GTGKT~~-~~~v~~~l~~ 68 (366)
T COG1474 43 SNIIIYGPTGTGKTAT-VKFVMEELEE 68 (366)
T ss_pred ccEEEECCCCCCHhHH-HHHHHHHHHh
Confidence 4699999999999987 4455555554
|
|
| >PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins | Back alignment and domain information |
|---|
Probab=93.20 E-value=0.67 Score=48.86 Aligned_cols=119 Identities=18% Similarity=0.299 Sum_probs=60.9
Q ss_pred CcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCC---CeeEEEEccCHHHHHHHHHHHHHhh-ccCCCcceEEEeCCC
Q psy15524 430 GDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKD---GIYAVIILPTRELALQTLEIFTKLC-KSFTWIVPSWLTGGE 505 (930)
Q Consensus 430 ~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~---~~~~lil~PtreLa~Q~~~~~~~~~-~~~~~~~~~~~~gg~ 505 (930)
.++++.++||-|||.. +++..+..+.....+ -+-+++-+|...=....+..+-..+ ..+.. ..
T Consensus 62 p~lLivG~snnGKT~I-----i~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~~--------~~ 128 (302)
T PF05621_consen 62 PNLLIVGDSNNGKTMI-----IERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAPYRP--------RD 128 (302)
T ss_pred CceEEecCCCCcHHHH-----HHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcccCC--------CC
Confidence 4799999999999983 455554433222112 2455666677665555555443332 21110 11
Q ss_pred chHHHHHHHhcCCcEEEECchhHHHhhhccCCcccccceEEEEecchhhhhcCcHHHHHHHHHHHhhcCc--cceEEEE
Q psy15524 506 KMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKP--QFQSILL 582 (930)
Q Consensus 506 ~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~l~~~g~~~~l~~i~~~l~~~~~--~~q~vl~ 582 (930)
. ...... ....+++. -.++++||||.|.++.....+ -..+++.++.... +..+|++
T Consensus 129 ~-~~~~~~-------------~~~~llr~------~~vrmLIIDE~H~lLaGs~~~-qr~~Ln~LK~L~NeL~ipiV~v 186 (302)
T PF05621_consen 129 R-VAKLEQ-------------QVLRLLRR------LGVRMLIIDEFHNLLAGSYRK-QREFLNALKFLGNELQIPIVGV 186 (302)
T ss_pred C-HHHHHH-------------HHHHHHHH------cCCcEEEeechHHHhcccHHH-HHHHHHHHHHHhhccCCCeEEe
Confidence 1 111110 11223332 457899999999998655332 3334444443333 3444544
|
TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition []. |
| >TIGR01075 uvrD DNA helicase II | Back alignment and domain information |
|---|
Probab=93.05 E-value=0.21 Score=61.07 Aligned_cols=71 Identities=20% Similarity=0.135 Sum_probs=54.9
Q ss_pred ccCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHHh
Q psy15524 4 TQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLC 81 (930)
Q Consensus 4 ~~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~ 81 (930)
..|++-|++|+... +..++|.|..|||||.+...=+...+.... .+..++|+|+.|+.-|.++.+++.++.
T Consensus 3 ~~Ln~~Q~~av~~~--~g~~lV~AgaGSGKT~~L~~Ria~Li~~~~-----v~p~~IL~lTFTnkAA~em~~Rl~~~~ 73 (715)
T TIGR01075 3 DGLNDKQREAVAAP--PGNLLVLAGAGSGKTRVLTHRIAWLLSVEN-----ASPHSIMAVTFTNKAAAEMRHRIGALL 73 (715)
T ss_pred cccCHHHHHHHcCC--CCCEEEEecCCCCHHHHHHHHHHHHHHcCC-----CCHHHeEeeeccHHHHHHHHHHHHHHh
Confidence 56999999998653 458999999999999986665555553211 123459999999999999999998875
|
Designed to identify uvrD members of the uvrD/rep subfamily. |
| >PLN03025 replication factor C subunit; Provisional | Back alignment and domain information |
|---|
Probab=92.98 E-value=1.1 Score=48.82 Aligned_cols=17 Identities=24% Similarity=0.522 Sum_probs=14.4
Q ss_pred CcEEEEccCCCchhHHh
Q psy15524 430 GDVLVRSQTGSGKTLAY 446 (930)
Q Consensus 430 ~d~lv~a~TGsGKTl~~ 446 (930)
.++++.||+|+|||..+
T Consensus 35 ~~lll~Gp~G~GKTtla 51 (319)
T PLN03025 35 PNLILSGPPGTGKTTSI 51 (319)
T ss_pred ceEEEECCCCCCHHHHH
Confidence 35899999999999763
|
|
| >PRK08769 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=92.96 E-value=1.1 Score=48.33 Aligned_cols=44 Identities=16% Similarity=0.235 Sum_probs=32.0
Q ss_pred CccCcHHHHHHHHHhh----cCC---cEEEEcCCCChHHHHHHHHHHHHHHh
Q psy15524 3 ITQVTTVQQLSIQPIL----DGG---DVLVRSQTGSGKTLAYAIPIIQKLQE 47 (930)
Q Consensus 3 ~~~l~~~Q~~ai~~~~----~g~---~~lv~apTGsGKT~~~~l~~l~~l~~ 47 (930)
+..++|||..++..+. .|+ -.|+.+|.|.||+..+.. +.+.+..
T Consensus 2 ~~~~yPW~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~-lA~~LlC 52 (319)
T PRK08769 2 TSAFSPWQQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALA-LAEHVLA 52 (319)
T ss_pred CccccccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHH-HHHHHhC
Confidence 3568999999998865 343 489999999999986544 3344443
|
|
| >TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda | Back alignment and domain information |
|---|
Probab=92.93 E-value=0.78 Score=47.23 Aligned_cols=21 Identities=19% Similarity=0.264 Sum_probs=17.0
Q ss_pred CCcEEEEcCCCChHHHHHHHH
Q psy15524 20 GGDVLVRSQTGSGKTLAYAIP 40 (930)
Q Consensus 20 g~~~lv~apTGsGKT~~~~l~ 40 (930)
+.++++.||+|+|||.....-
T Consensus 38 ~~~lll~G~~G~GKT~la~~~ 58 (226)
T TIGR03420 38 DRFLYLWGESGSGKSHLLQAA 58 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHH
Confidence 457999999999999865443
|
Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP. |
| >PHA03372 DNA packaging terminase subunit 1; Provisional | Back alignment and domain information |
|---|
Probab=92.90 E-value=2.3 Score=48.89 Aligned_cols=158 Identities=20% Similarity=0.226 Sum_probs=102.7
Q ss_pred CHHHHHHHHhcCCCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHH
Q psy15524 399 HPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTREL 478 (930)
Q Consensus 399 ~~~~~~~l~~~~~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreL 478 (930)
...+.+.++..|+...++.- ++..+ +.+--+..-|---|||. |+.|++..++. .-.|.++.|++.-|-.
T Consensus 176 a~r~~~~lk~~Fdi~~~s~~---~l~~F-KQkaTVFLVPRRHGKTW-f~VpiIsllL~------s~~gI~IGYvAHqKhv 244 (668)
T PHA03372 176 ANRVLEYLLHVFDIEFLSES---SLNIF-KQKATVFLVPRRHGKTW-FIIPIISFLLK------NIIGISIGYVAHQKHV 244 (668)
T ss_pred HHHHHHHHHHHcCCcccCHH---HHHHh-hccceEEEecccCCcee-hHHHHHHHHHH------hhcCceEEEEeeHHHH
Confidence 34455566667787777643 33333 34444555599999998 58999988876 2458899999999998
Q ss_pred HHHHHHHHHHhhc-cCCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhH----HHhhhccCCcccccceEEEEecchh
Q psy15524 479 ALQTLEIFTKLCK-SFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRL----LDHCKHTETLKFSKVEHLVLDEADR 553 (930)
Q Consensus 479 a~Q~~~~~~~~~~-~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl----~~~l~~~~~~~~~~l~~lVlDEah~ 553 (930)
++-+++++...+. +++..... -.++..|.+.-||.= .....++..+.-++++++++||||-
T Consensus 245 s~~Vf~EI~~~lrrwF~~~~vi--------------~~k~~tI~~s~pg~Kst~~fasc~n~NsiRGQ~fnll~VDEA~F 310 (668)
T PHA03372 245 SQFVLKEVEFRCRRMFPRKHTI--------------ENKDNVISIDHRGAKSTALFASCYNTNSIRGQNFHLLLVDEAHF 310 (668)
T ss_pred HHHHHHHHHHHHhhhcCcccee--------------eecCcEEEEecCCCcceeeehhhccCccccCCCCCEEEEehhhc
Confidence 8887777765443 22211110 013446777777642 2122344456677899999999997
Q ss_pred hhhcCcHHHHHHHHHHHhhcCccceEEEEccccC
Q psy15524 554 ILDQGYERDIAEFLEILKKQKPQFQSILLSATLT 587 (930)
Q Consensus 554 l~~~g~~~~l~~i~~~l~~~~~~~q~vl~SAT~~ 587 (930)
+- .+.+..|+-.+.. .+..++..|.|-+
T Consensus 311 I~----~~a~~tilgfm~q--~~~KiIfISS~Ns 338 (668)
T PHA03372 311 IK----KDAFNTILGFLAQ--NTTKIIFISSTNT 338 (668)
T ss_pred cC----HHHHHHhhhhhcc--cCceEEEEeCCCC
Confidence 74 3445666666654 4778899998854
|
|
| >PRK14712 conjugal transfer nickase/helicase TraI; Provisional | Back alignment and domain information |
|---|
Probab=92.87 E-value=0.87 Score=58.99 Aligned_cols=63 Identities=22% Similarity=0.264 Sum_probs=45.5
Q ss_pred cCcHHHHHHHHHhhcC--CcEEEEcCCCChHHHHH--HHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHH
Q psy15524 5 QVTTVQQLSIQPILDG--GDVLVRSQTGSGKTLAY--AIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTL 74 (930)
Q Consensus 5 ~l~~~Q~~ai~~~~~g--~~~lv~apTGsGKT~~~--~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~ 74 (930)
.|++-|++|+..++.. +-++|.+..|+|||.+. ++.++..+.. ..+..++.++||-.-+..+.
T Consensus 835 ~Lt~~Qr~Av~~iLts~dr~~~IqG~AGTGKTT~l~~i~~~~~~l~e-------~~g~~V~glAPTgkAa~~L~ 901 (1623)
T PRK14712 835 KLTSGQRAATRMILETSDRFTVVQGYAGVGKTTQFRAVMSAVNMLPE-------SERPRVVGLGPTHRAVGEMR 901 (1623)
T ss_pred ccCHHHHHHHHHHHhCCCceEEEEeCCCCCHHHHHHHHHHHHHHHhh-------ccCceEEEEechHHHHHHHH
Confidence 5899999999999965 56999999999999873 2233332221 23456888999987666553
|
|
| >PRK11773 uvrD DNA-dependent helicase II; Provisional | Back alignment and domain information |
|---|
Probab=92.85 E-value=0.24 Score=60.52 Aligned_cols=71 Identities=20% Similarity=0.151 Sum_probs=54.7
Q ss_pred ccCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHHh
Q psy15524 4 TQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLC 81 (930)
Q Consensus 4 ~~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~ 81 (930)
..|++-|++|+... ...++|.|+.|||||.+...=+...+.... .+..++|+|+-|+.-|.++.+++.++.
T Consensus 8 ~~Ln~~Q~~av~~~--~g~~lV~AgaGSGKT~vl~~Ria~Li~~~~-----v~p~~IL~lTFT~kAA~Em~~Rl~~~~ 78 (721)
T PRK11773 8 DSLNDKQREAVAAP--LGNMLVLAGAGSGKTRVLVHRIAWLMQVEN-----ASPYSIMAVTFTNKAAAEMRHRIEQLL 78 (721)
T ss_pred HhcCHHHHHHHhCC--CCCEEEEecCCCCHHHHHHHHHHHHHHcCC-----CChhHeEeeeccHHHHHHHHHHHHHHh
Confidence 46899999998743 358999999999999986665555553211 123459999999999999999998875
|
|
| >COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=92.81 E-value=0.4 Score=60.58 Aligned_cols=159 Identities=18% Similarity=0.146 Sum_probs=96.6
Q ss_pred ccCcHHHHHHHHHhh-----cCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHH
Q psy15524 4 TQVTTVQQLSIQPIL-----DGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFT 78 (930)
Q Consensus 4 ~~l~~~Q~~ai~~~~-----~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~ 78 (930)
.++.++|.+.++.+. .+.+.+++..-|-|||+..+.-+...... .. ...+.+++++|+- ++.++.+.+.
T Consensus 337 ~~lr~yq~~g~~wl~~~l~~~~~~~ilaD~mglGKTiq~i~~l~~~~~~-~~----~~~~~~liv~p~s-~~~nw~~e~~ 410 (866)
T COG0553 337 AELRPYQLEGVNWLSELLRSNLLGGILADDMGLGKTVQTIALLLSLLES-IK----VYLGPALIVVPAS-LLSNWKREFE 410 (866)
T ss_pred hhhHHHHHHHHHHHHHHHHhccCCCcccccccchhHHHHHHHHHhhhhc-cc----CCCCCeEEEecHH-HHHHHHHHHh
Confidence 467899999987644 26678888999999998755555442221 11 1123488888865 5566777776
Q ss_pred HHhhhcCCce-eEEeeCCCch----HHHHH-HhcCC----CcEEEEChHHHHHHHhcCCCccCCCccEEEEccccccccc
Q psy15524 79 KLCKSFTWIV-PSWLTGGEKM----KSEKA-RIRKG----ISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQ 148 (930)
Q Consensus 79 ~~~~~~~~~~-~~~~~g~~~~----~~~~~-~l~~~----~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~ 148 (930)
++... .. +..+.|.... ..... ..... .+++++|.+.+.........+.-....++|+||+|.+-..
T Consensus 411 k~~~~---~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~v~itty~~l~~~~~~~~~l~~~~~~~~v~DEa~~ikn~ 487 (866)
T COG0553 411 KFAPD---LRLVLVYHGEKSELDKKREALRDLLKLHLVIIFDVVITTYELLRRFLVDHGGLKKIEWDRVVLDEAHRIKND 487 (866)
T ss_pred hhCcc---ccceeeeeCCcccccHHHHHHHHHhhhcccceeeEEechHHHHHHhhhhHHHHhhceeeeeehhhHHHHhhh
Confidence 66543 33 5555665541 22222 22222 7899999998877432223344567889999999996433
Q ss_pred CcHHHHHHHHHHHhhcCCCceEEEEEeec
Q psy15524 149 GYERDIAEFLEILKKQKPQFQSILLSATL 177 (930)
Q Consensus 149 ~~~~~~~~i~~~l~~~~~~~~~i~lSAT~ 177 (930)
.- .....+. .+... ..+.+|.||
T Consensus 488 ~s-~~~~~l~-~~~~~----~~~~LtgTP 510 (866)
T COG0553 488 QS-SEGKALQ-FLKAL----NRLDLTGTP 510 (866)
T ss_pred hh-HHHHHHH-HHhhc----ceeeCCCCh
Confidence 21 1111212 33222 348899998
|
|
| >PRK14958 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=92.80 E-value=0.77 Score=53.27 Aligned_cols=39 Identities=15% Similarity=0.327 Sum_probs=26.7
Q ss_pred ccceEEEEecchhhhhcCcHHHHHHHHHHHhhcCccceEEEEc
Q psy15524 541 SKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLS 583 (930)
Q Consensus 541 ~~l~~lVlDEah~l~~~g~~~~l~~i~~~l~~~~~~~q~vl~S 583 (930)
.+.+++||||+|+|.... ...+++.+...++...+++.+
T Consensus 118 ~~~kV~iIDE~~~ls~~a----~naLLk~LEepp~~~~fIlat 156 (509)
T PRK14958 118 GRFKVYLIDEVHMLSGHS----FNALLKTLEEPPSHVKFILAT 156 (509)
T ss_pred CCcEEEEEEChHhcCHHH----HHHHHHHHhccCCCeEEEEEE
Confidence 457899999999887543 455666676655566666544
|
|
| >PRK11054 helD DNA helicase IV; Provisional | Back alignment and domain information |
|---|
Probab=92.80 E-value=0.3 Score=58.61 Aligned_cols=71 Identities=17% Similarity=0.089 Sum_probs=52.4
Q ss_pred CCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHHHHhh
Q psy15524 413 TQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLC 490 (930)
Q Consensus 413 ~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~ 490 (930)
..+++-|.+|+-. ...+++|.|..|||||.+..--+...+... ...+..+|+++.|+..|..+.+++....
T Consensus 195 ~~L~~~Q~~av~~--~~~~~lV~agaGSGKT~vl~~r~ayLl~~~-----~~~~~~IL~ltft~~AA~em~eRL~~~l 265 (684)
T PRK11054 195 SPLNPSQARAVVN--GEDSLLVLAGAGSGKTSVLVARAGWLLARG-----QAQPEQILLLAFGRQAAEEMDERIRERL 265 (684)
T ss_pred CCCCHHHHHHHhC--CCCCeEEEEeCCCCHHHHHHHHHHHHHHhC-----CCCHHHeEEEeccHHHHHHHHHHHHHhc
Confidence 4689999998854 345689999999999998544443333321 1235679999999999999988887654
|
|
| >PRK07994 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=92.80 E-value=1.7 Score=51.48 Aligned_cols=38 Identities=13% Similarity=0.301 Sum_probs=25.5
Q ss_pred ccceEEEEecchhhhhcCcHHHHHHHHHHHhhcCccceEEEE
Q psy15524 541 SKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILL 582 (930)
Q Consensus 541 ~~l~~lVlDEah~l~~~g~~~~l~~i~~~l~~~~~~~q~vl~ 582 (930)
...+++||||+|+|.... ...+++.+...++...+++.
T Consensus 118 g~~KV~IIDEah~Ls~~a----~NALLKtLEEPp~~v~FIL~ 155 (647)
T PRK07994 118 GRFKVYLIDEVHMLSRHS----FNALLKTLEEPPEHVKFLLA 155 (647)
T ss_pred CCCEEEEEechHhCCHHH----HHHHHHHHHcCCCCeEEEEe
Confidence 467899999999987543 45566667654444555554
|
|
| >TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI | Back alignment and domain information |
|---|
Probab=92.79 E-value=1.1 Score=60.42 Aligned_cols=134 Identities=16% Similarity=0.230 Sum_probs=76.7
Q ss_pred cCcHHHHHHHHHhhcCC--cEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHHhh
Q psy15524 5 QVTTVQQLSIQPILDGG--DVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCK 82 (930)
Q Consensus 5 ~l~~~Q~~ai~~~~~g~--~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~ 82 (930)
.|++-|++|+..++... =.++.++.|+|||.+ +-.++..+.. .|..+++++||-.-+..+.+......
T Consensus 429 ~Ls~~Q~~Av~~il~s~~~v~ii~G~aGTGKTt~-l~~l~~~~~~--------~G~~V~~lAPTgrAA~~L~e~~g~~A- 498 (1960)
T TIGR02760 429 ALSPSNKDAVSTLFTSTKRFIIINGFGGTGSTEI-AQLLLHLASE--------QGYEIQIITAGSLSAQELRQKIPRLA- 498 (1960)
T ss_pred CCCHHHHHHHHHHHhCCCCeEEEEECCCCCHHHH-HHHHHHHHHh--------cCCeEEEEeCCHHHHHHHHHHhcchh-
Confidence 58999999999988753 489999999999975 3344444332 35679999999886665554321110
Q ss_pred hcCCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCcHHHHHHHHHHHh
Q psy15524 83 SFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILK 162 (930)
Q Consensus 83 ~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~~~~~~~i~~~l~ 162 (930)
.....+...+... .-..|...++ . ....+..-++|||||+-++.. .++..++....
T Consensus 499 -------------~Ti~~~l~~l~~~--~~~~tv~~fl---~--~~~~l~~~~vlIVDEAsMl~~----~~~~~Ll~~a~ 554 (1960)
T TIGR02760 499 -------------STFITWVKNLFND--DQDHTVQGLL---D--KSSPFSNKDIFVVDEANKLSN----NELLKLIDKAE 554 (1960)
T ss_pred -------------hhHHHHHHhhccc--ccchhHHHhh---c--ccCCCCCCCEEEEECCCCCCH----HHHHHHHHHHh
Confidence 0011111111111 1112322232 1 223356778999999997753 34555555443
Q ss_pred hcCCCceEEEEE
Q psy15524 163 KQKPQFQSILLS 174 (930)
Q Consensus 163 ~~~~~~~~i~lS 174 (930)
... .++|++-
T Consensus 555 ~~g--arvVlvG 564 (1960)
T TIGR02760 555 QHN--SKLILLN 564 (1960)
T ss_pred hcC--CEEEEEc
Confidence 333 4555443
|
This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein. |
| >PRK06835 DNA replication protein DnaC; Validated | Back alignment and domain information |
|---|
Probab=92.77 E-value=1.2 Score=48.54 Aligned_cols=45 Identities=24% Similarity=0.298 Sum_probs=27.7
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHH
Q psy15524 20 GGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTL 74 (930)
Q Consensus 20 g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~ 74 (930)
+.++++.||||+|||..... +...+.. .|..+++ .+..+|..++.
T Consensus 183 ~~~Lll~G~~GtGKThLa~a-Ia~~l~~--------~g~~V~y-~t~~~l~~~l~ 227 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSNC-IAKELLD--------RGKSVIY-RTADELIEILR 227 (329)
T ss_pred CCcEEEECCCCCcHHHHHHH-HHHHHHH--------CCCeEEE-EEHHHHHHHHH
Confidence 57899999999999985443 3344432 1333544 44555555443
|
|
| >PRK14961 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=92.76 E-value=1.9 Score=47.94 Aligned_cols=39 Identities=18% Similarity=0.342 Sum_probs=25.6
Q ss_pred ccceEEEEecchhhhhcCcHHHHHHHHHHHhhcCccceEEEEc
Q psy15524 541 SKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLS 583 (930)
Q Consensus 541 ~~l~~lVlDEah~l~~~g~~~~l~~i~~~l~~~~~~~q~vl~S 583 (930)
...+++||||+|.+.... ...+++.+...++...+++.+
T Consensus 118 ~~~kviIIDEa~~l~~~a----~naLLk~lEe~~~~~~fIl~t 156 (363)
T PRK14961 118 SRFKVYLIDEVHMLSRHS----FNALLKTLEEPPQHIKFILAT 156 (363)
T ss_pred CCceEEEEEChhhcCHHH----HHHHHHHHhcCCCCeEEEEEc
Confidence 456899999999886533 345666666544455555543
|
|
| >PRK14956 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=92.75 E-value=0.77 Score=52.03 Aligned_cols=28 Identities=25% Similarity=0.450 Sum_probs=19.6
Q ss_pred ccceEEEEecchhhhhcCcHHHHHHHHHHHhh
Q psy15524 541 SKVEHLVLDEADRILDQGYERDIAEFLEILKK 572 (930)
Q Consensus 541 ~~l~~lVlDEah~l~~~g~~~~l~~i~~~l~~ 572 (930)
....++||||||++.... ...++..+..
T Consensus 120 g~~KV~IIDEah~Ls~~A----~NALLKtLEE 147 (484)
T PRK14956 120 GKYKVYIIDEVHMLTDQS----FNALLKTLEE 147 (484)
T ss_pred CCCEEEEEechhhcCHHH----HHHHHHHhhc
Confidence 356899999999886543 4555666654
|
|
| >TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type | Back alignment and domain information |
|---|
Probab=92.75 E-value=0.53 Score=61.02 Aligned_cols=125 Identities=18% Similarity=0.108 Sum_probs=81.3
Q ss_pred cCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHHhhhc
Q psy15524 5 QVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSF 84 (930)
Q Consensus 5 ~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~ 84 (930)
.+|+-|++||. ..|.+++|.|.-|||||.+.+--++..+... .+..++|+|+=|++-+.++.+++.+.....
T Consensus 1 ~~t~~Q~~ai~--~~~~~~lv~A~AGsGKT~~lv~r~~~~~~~~------~~~~~il~~tFt~~aa~e~~~ri~~~l~~~ 72 (1232)
T TIGR02785 1 QWTDEQWQAIY--TRGQNILVSASAGSGKTAVLVERIIKKILRG------VDIDRLLVVTFTNAAAREMKERIEEALQKA 72 (1232)
T ss_pred CCCHHHHHHHh--CCCCCEEEEecCCCcHHHHHHHHHHHHHhcC------CCHhhEEEEeccHHHHHHHHHHHHHHHHHH
Confidence 36899999997 3688999999999999999877777766542 112359999999999999999988876532
Q ss_pred CCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCC-CccEEEEccccc
Q psy15524 85 TWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFS-KVEHLVLDEADR 144 (930)
Q Consensus 85 ~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~-~l~~vViDE~h~ 144 (930)
.. .........+.+..-...-|+|-..+...+.+.....+. +-.+=|.||...
T Consensus 73 ~~-------~~p~~~~L~~q~~~~~~~~i~Tihsf~~~~~~~~~~~l~ldP~F~i~de~e~ 126 (1232)
T TIGR02785 73 LQ-------QEPNSKHLRRQLALLNTANISTLHSFCLKVIRKHYYLLDLDPSFRILTDTEQ 126 (1232)
T ss_pred Hh-------cCchhHHHHHHHhhccCCeEeeHHHHHHHHHHHhhhhcCCCCCceeCCHHHH
Confidence 10 011112222223333457799987775444432221111 124456888775
|
AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species. |
| >TIGR01075 uvrD DNA helicase II | Back alignment and domain information |
|---|
Probab=92.73 E-value=0.27 Score=60.20 Aligned_cols=72 Identities=19% Similarity=0.137 Sum_probs=54.0
Q ss_pred CCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHHHHhhc
Q psy15524 413 TQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCK 491 (930)
Q Consensus 413 ~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~ 491 (930)
..+++-|.+++.. ....++|.|..|||||.+..--+...+... .-+...+|+|+.|+..|.++.+.+.++..
T Consensus 3 ~~Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~~L~~Ria~Li~~~-----~v~p~~IL~lTFTnkAA~em~~Rl~~~~~ 74 (715)
T TIGR01075 3 DGLNDKQREAVAA--PPGNLLVLAGAGSGKTRVLTHRIAWLLSVE-----NASPHSIMAVTFTNKAAAEMRHRIGALLG 74 (715)
T ss_pred cccCHHHHHHHcC--CCCCEEEEecCCCCHHHHHHHHHHHHHHcC-----CCCHHHeEeeeccHHHHHHHHHHHHHHhc
Confidence 4688999999865 346799999999999998544444443321 11345799999999999999999888764
|
Designed to identify uvrD members of the uvrD/rep subfamily. |
| >PHA03333 putative ATPase subunit of terminase; Provisional | Back alignment and domain information |
|---|
Probab=92.68 E-value=1 Score=52.52 Aligned_cols=138 Identities=13% Similarity=0.162 Sum_probs=78.0
Q ss_pred cCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHHHHhhccCC---Ccc----eEE
Q psy15524 428 DGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFT---WIV----PSW 500 (930)
Q Consensus 428 ~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~---~~~----~~~ 500 (930)
+.+-.++.+|=|.|||.+..+.+...+.. .|.+++|.+|...-+.++++.++..+...+ |.. ...
T Consensus 186 kq~~tV~taPRqrGKS~iVgi~l~~La~f--------~Gi~IlvTAH~~~ts~evF~rv~~~le~lg~~~~fp~~~~iv~ 257 (752)
T PHA03333 186 GKCYTAATVPRRCGKTTIMAIILAAMISF--------LEIDIVVQAQRKTMCLTLYNRVETVVHAYQHKPWFPEEFKIVT 257 (752)
T ss_pred hhcceEEEeccCCCcHHHHHHHHHHHHHh--------cCCeEEEECCChhhHHHHHHHHHHHHHHhccccccCCCceEEE
Confidence 34557888999999999865555543321 367899999999999999998888775321 110 011
Q ss_pred EeCCCch-HHHH-HHHhcC-CcEEEECchhHHHhhhccCCcccccceEEEEecchhhhhcCcHHHHHHHHHHHhhcCccc
Q psy15524 501 LTGGEKM-KSEK-ARIRKG-ISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQF 577 (930)
Q Consensus 501 ~~gg~~~-~~~~-~~~~~~-~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~l~~~g~~~~l~~i~~~l~~~~~~~ 577 (930)
..||... .-.. .....| ..|.+++ +......-..++++|+|||.-+.+ +.+..++-.+.. .+.
T Consensus 258 vkgg~E~I~f~~p~gak~G~sti~F~A--------rs~~s~RG~~~DLLIVDEAAfI~~----~~l~aIlP~l~~--~~~ 323 (752)
T PHA03333 258 LKGTDENLEYISDPAAKEGKTTAHFLA--------SSPNAARGQNPDLVIVDEAAFVNP----GALLSVLPLMAV--KGT 323 (752)
T ss_pred eeCCeeEEEEecCcccccCcceeEEec--------ccCCCcCCCCCCEEEEECcccCCH----HHHHHHHHHHcc--CCC
Confidence 2222110 0000 000001 2233322 111222334578999999998865 444555555543 255
Q ss_pred eEEEEccccC
Q psy15524 578 QSILLSATLT 587 (930)
Q Consensus 578 q~vl~SAT~~ 587 (930)
+.+++|.+..
T Consensus 324 k~IiISS~~~ 333 (752)
T PHA03333 324 KQIHISSPVD 333 (752)
T ss_pred ceEEEeCCCC
Confidence 6677777753
|
|
| >TIGR00631 uvrb excinuclease ABC, B subunit | Back alignment and domain information |
|---|
Probab=92.67 E-value=0.27 Score=58.71 Aligned_cols=66 Identities=26% Similarity=0.334 Sum_probs=51.4
Q ss_pred cCcHHHHHHHHHhhcC-----CcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHH
Q psy15524 5 QVTTVQQLSIQPILDG-----GDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTK 79 (930)
Q Consensus 5 ~l~~~Q~~ai~~~~~g-----~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~ 79 (930)
.|+..|..++..+.++ +..++.+.||||||+...- ++..+ +..+|||+|...+|.|++..|+.
T Consensus 9 ~~~~~Q~~ai~~l~~~~~~~~~~~~l~Gvtgs~kt~~~a~-~~~~~-----------~~p~Lvi~~n~~~A~ql~~el~~ 76 (655)
T TIGR00631 9 QPAGDQPKAIAKLVEGLTDGEKHQTLLGVTGSGKTFTMAN-VIAQV-----------NRPTLVIAHNKTLAAQLYNEFKE 76 (655)
T ss_pred CCChHHHHHHHHHHHhhhcCCCcEEEECCCCcHHHHHHHH-HHHHh-----------CCCEEEEECCHHHHHHHHHHHHH
Confidence 5889999999887643 2567999999999987443 33222 11289999999999999999999
Q ss_pred Hhh
Q psy15524 80 LCK 82 (930)
Q Consensus 80 ~~~ 82 (930)
++.
T Consensus 77 f~p 79 (655)
T TIGR00631 77 FFP 79 (655)
T ss_pred hCC
Confidence 874
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) |
| >PRK00411 cdc6 cell division control protein 6; Reviewed | Back alignment and domain information |
|---|
Probab=92.61 E-value=0.38 Score=54.39 Aligned_cols=45 Identities=16% Similarity=0.217 Sum_probs=25.4
Q ss_pred CccEEEEcccccccccCcHHHHHHHHHHHhhcCC-CceEEEEEeec
Q psy15524 133 KVEHLVLDEADRILDQGYERDIAEFLEILKKQKP-QFQSILLSATL 177 (930)
Q Consensus 133 ~l~~vViDE~h~~~~~~~~~~~~~i~~~l~~~~~-~~~~i~lSAT~ 177 (930)
..-+|||||+|.+.+......+..+++....... .+.+|+.+...
T Consensus 138 ~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~~~~~v~vI~i~~~~ 183 (394)
T PRK00411 138 RVLIVALDDINYLFEKEGNDVLYSLLRAHEEYPGARIGVIGISSDL 183 (394)
T ss_pred CEEEEEECCHhHhhccCCchHHHHHHHhhhccCCCeEEEEEEECCc
Confidence 3457899999998733223445555554433222 34456655544
|
|
| >PRK05298 excinuclease ABC subunit B; Provisional | Back alignment and domain information |
|---|
Probab=92.59 E-value=0.54 Score=56.52 Aligned_cols=66 Identities=24% Similarity=0.350 Sum_probs=51.6
Q ss_pred cCcHHHHHHHHHhhcC-----CcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHH
Q psy15524 5 QVTTVQQLSIQPILDG-----GDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTK 79 (930)
Q Consensus 5 ~l~~~Q~~ai~~~~~g-----~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~ 79 (930)
.|++.|..++..+.++ +..++.+.||||||+... .++... +..+|||+|+...|.|+++.+..
T Consensus 12 ~~~~~Q~~ai~~l~~~~~~~~~~~ll~Gl~gs~ka~lia-~l~~~~-----------~r~vLIVt~~~~~A~~l~~dL~~ 79 (652)
T PRK05298 12 KPAGDQPQAIEELVEGIEAGEKHQTLLGVTGSGKTFTMA-NVIARL-----------QRPTLVLAHNKTLAAQLYSEFKE 79 (652)
T ss_pred CCChHHHHHHHHHHHhhhcCCCcEEEEcCCCcHHHHHHH-HHHHHh-----------CCCEEEEECCHHHHHHHHHHHHH
Confidence 5899999999987643 257799999999998743 232222 12399999999999999999988
Q ss_pred Hhh
Q psy15524 80 LCK 82 (930)
Q Consensus 80 ~~~ 82 (930)
++.
T Consensus 80 ~~~ 82 (652)
T PRK05298 80 FFP 82 (652)
T ss_pred hcC
Confidence 864
|
|
| >cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases | Back alignment and domain information |
|---|
Probab=92.57 E-value=0.9 Score=48.33 Aligned_cols=172 Identities=11% Similarity=0.147 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCCCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHH
Q psy15524 400 PFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELA 479 (930)
Q Consensus 400 ~~~~~~l~~~~~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa 479 (930)
+++.++|... +..+--+.--+.+.-+..|.-+++.|++|+|||....--+.+.+.. .|..+++++ +.+-.
T Consensus 2 ~~~~~~~~~~-~~~tg~~~Ld~~~gG~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~--------~g~~vl~iS-~E~~~ 71 (271)
T cd01122 2 EEIREALSNE-EVWWPFPVLNKLTKGLRKGELIILTAGTGVGKTTFLREYALDLITQ--------HGVRVGTIS-LEEPV 71 (271)
T ss_pred chhhcccccc-CCCCCcceeeeeeEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHh--------cCceEEEEE-cccCH
Q ss_pred HHHHHHHHHhhccCCCcceE--EEeCCCchHHHHHHHhcCCcEEEE------CchhHHHhhhccCCcccccceEEEEecc
Q psy15524 480 LQTLEIFTKLCKSFTWIVPS--WLTGGEKMKSEKARIRKGISILVA------TPGRLLDHCKHTETLKFSKVEHLVLDEA 551 (930)
Q Consensus 480 ~Q~~~~~~~~~~~~~~~~~~--~~~gg~~~~~~~~~~~~~~~Ilv~------Tp~rl~~~l~~~~~~~~~~l~~lVlDEa 551 (930)
.++...+............. ..............+.....+.+- |+..+...++. ...-..+++||||..
T Consensus 72 ~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~d~~~~~~~~~i~~~i~~--~~~~~~~~~vvID~l 149 (271)
T cd01122 72 VRTARRLLGQYAGKRLHLPDTVFIYTLEEFDAAFDEFEGTGRLFMYDSFGEYSMDSVLEKVRY--MAVSHGIQHIIIDNL 149 (271)
T ss_pred HHHHHHHHHHHhCCCcccCCccccccHHHHHHHHHHhcCCCcEEEEcCCCccCHHHHHHHHHH--HHhcCCceEEEECCH
Q ss_pred hhhhhcC---------cHHHHHHHHHHHhhcCccceEEEEccc
Q psy15524 552 DRILDQG---------YERDIAEFLEILKKQKPQFQSILLSAT 585 (930)
Q Consensus 552 h~l~~~g---------~~~~l~~i~~~l~~~~~~~q~vl~SAT 585 (930)
+.+.... ....+..+....... ++.++++|-+
T Consensus 150 ~~l~~~~~~~~~~~~~~~~~~~~L~~la~~~--~vtvll~sq~ 190 (271)
T cd01122 150 SIMVSDERASGDERKALDEIMTKLRGFATEH--GIHITLVSHL 190 (271)
T ss_pred HHHhccCCCchhHHHHHHHHHHHHHHHHHHh--CCEEEEEecc
|
Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands. |
| >PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=92.52 E-value=2.2 Score=48.36 Aligned_cols=121 Identities=21% Similarity=0.219 Sum_probs=60.0
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEc--ccHHHHHHHHHHHHHHhhhcCCceeEEeeCCCc
Q psy15524 20 GGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIIL--PTRELALQTLEIFTKLCKSFTWIVPSWLTGGEK 97 (930)
Q Consensus 20 g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~--P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~ 97 (930)
|+.+++.+|||+|||.....-+...... ..+.++.++. |.+.-+.++ ++.+....+ +.
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~-------~~g~~V~li~~D~~r~~a~eq---L~~~a~~~~-vp--------- 280 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALL-------YGKKKVALITLDTYRIGAVEQ---LKTYAKIMG-IP--------- 280 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHh-------cCCCeEEEEECCccHHHHHHH---HHHHHHHhC-Cc---------
Confidence 5678999999999998655433322211 1123355444 333323322 222222111 11
Q ss_pred hHHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEccccccccc-CcHHHHHHHHHHHhhcCCCceEEEEEee
Q psy15524 98 MKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQ-GYERDIAEFLEILKKQKPQFQSILLSAT 176 (930)
Q Consensus 98 ~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~-~~~~~~~~i~~~l~~~~~~~~~i~lSAT 176 (930)
-..+.++..+...+.. +.+.++|+||.+-..... .....+..++.. ...+...++.+|||
T Consensus 281 ------------~~~~~~~~~l~~~l~~-----~~~~DlVlIDt~G~~~~d~~~~~~L~~ll~~--~~~~~~~~LVl~a~ 341 (424)
T PRK05703 281 ------------VEVVYDPKELAKALEQ-----LRDCDVILIDTAGRSQRDKRLIEELKALIEF--SGEPIDVYLVLSAT 341 (424)
T ss_pred ------------eEccCCHHhHHHHHHH-----hCCCCEEEEeCCCCCCCCHHHHHHHHHHHhc--cCCCCeEEEEEECC
Confidence 1222355555555443 346799999988653221 122233333331 22233457889998
Q ss_pred cCC
Q psy15524 177 LTP 179 (930)
Q Consensus 177 ~~~ 179 (930)
...
T Consensus 342 ~~~ 344 (424)
T PRK05703 342 TKY 344 (424)
T ss_pred CCH
Confidence 764
|
|
| >TIGR01074 rep ATP-dependent DNA helicase Rep | Back alignment and domain information |
|---|
Probab=92.51 E-value=0.46 Score=57.77 Aligned_cols=82 Identities=21% Similarity=0.060 Sum_probs=0.0
Q ss_pred CCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHHHHhhccC
Q psy15524 414 QVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSF 493 (930)
Q Consensus 414 ~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~ 493 (930)
.+++-|.+++.. ....++|.|..|||||.+..--+...+.. ...+...+++|+.|+..|.++.+.+.+.++..
T Consensus 1 ~Ln~~Q~~av~~--~~~~~~V~Ag~GSGKT~~L~~ri~~ll~~-----~~~~p~~IL~vTFt~~Aa~em~~Rl~~~l~~~ 73 (664)
T TIGR01074 1 KLNPQQQEAVEY--VTGPCLVLAGAGSGKTRVITNKIAYLIQN-----CGYKARNIAAVTFTNKAAREMKERVAKTLGKG 73 (664)
T ss_pred CCCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHHHh-----cCCCHHHeEEEeccHHHHHHHHHHHHHHhCcc
Q ss_pred CCcceEEEe
Q psy15524 494 TWIVPSWLT 502 (930)
Q Consensus 494 ~~~~~~~~~ 502 (930)
....+.+.+
T Consensus 74 ~~~~v~v~T 82 (664)
T TIGR01074 74 EARGLTIST 82 (664)
T ss_pred ccCCeEEEe
|
Designed to identify rep members of the uvrD/rep subfamily. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 930 | ||||
| 3sqw_A | 579 | Structure Of Mss116p (Nte Deletion) Bound To Ssrna | 7e-51 | ||
| 3sqx_A | 512 | Structure Of Mss116p (Nte And C-Tail Double Deletio | 9e-51 | ||
| 3i5x_A | 563 | Structure Of Mss116p Bound To Ssrna And Amp-Pnp Len | 1e-50 | ||
| 2db3_A | 434 | Structural Basis For Rna Unwinding By The Dead-Box | 6e-42 | ||
| 2j0q_A | 410 | The Crystal Structure Of The Exon Junction Complex | 4e-38 | ||
| 2j0u_B | 374 | The Crystal Structure Of Eif4aiii-Barentsz Complex | 4e-38 | ||
| 2xb2_A | 411 | Crystal Structure Of The Core Mago-Y14-Eif4aiii-Bar | 4e-38 | ||
| 2hxy_A | 391 | Crystal Structure Of Human Apo-Eif4aiii Length = 39 | 5e-38 | ||
| 2hyi_C | 413 | Structure Of The Human Exon Junction Complex With A | 5e-38 | ||
| 2i4i_A | 417 | Crystal Structure Of Human Dead-Box Rna Helicase Dd | 8e-38 | ||
| 2j0u_A | 374 | The Crystal Structure Of Eif4aiii-Barentsz Complex | 9e-38 | ||
| 1s2m_A | 400 | Crystal Structure Of The Dead Box Protein Dhh1p Len | 3e-37 | ||
| 2z0m_A | 337 | Crystal Structure Of Hypothetical Atp-Dependent Rna | 9e-35 | ||
| 1hv8_A | 367 | Crystal Structure Of A Dead Box Protein From The Hy | 1e-34 | ||
| 3ly5_A | 262 | Ddx18 Dead-Domain Length = 262 | 3e-32 | ||
| 2pl3_A | 236 | Human Dead-Box Rna Helicase Ddx10, Dead Domain In C | 6e-32 | ||
| 1xtk_A | 390 | Structure Of Decd To Dead Mutation Of Human Uap56 L | 3e-29 | ||
| 1xtj_A | 386 | Structure Of Human Uap56 In Complex With Adp Length | 7e-29 | ||
| 1xti_A | 391 | Structure Of Wildtype Human Uap56 Length = 391 | 8e-29 | ||
| 2vso_A | 395 | Crystal Structure Of A Translation Initiation Compl | 2e-28 | ||
| 2zu6_A | 388 | Crystal Structure Of The Eif4a-Pdcd4 Complex Length | 3e-28 | ||
| 3eiq_A | 414 | Crystal Structure Of Pdcd4-eif4a Length = 414 | 3e-28 | ||
| 1fuu_A | 394 | Yeast Initiation Factor 4a Length = 394 | 8e-27 | ||
| 3ber_A | 249 | Human Dead-Box Rna-Helicase Ddx47, Conserved Domain | 3e-26 | ||
| 3pew_A | 395 | S. Cerevisiae Dbp5 L327v Bound To Rna And Adp Bef3 | 7e-26 | ||
| 3pey_A | 395 | S. Cerevisiae Dbp5 Bound To Rna And Adp Bef3 Length | 7e-26 | ||
| 2gxq_A | 207 | Hera N-Terminal Domain In Complex With Amp, Crystal | 2e-25 | ||
| 3mwj_A | 207 | Q28e Mutant Of Hera N-Terminal Reca-Like Domain, Ap | 4e-25 | ||
| 4db4_A | 256 | Mss116p Dead-Box Helicase Domain 2 Bound To A Chima | 9e-24 | ||
| 4db2_C | 257 | Mss116p Dead-Box Helicase Domain 2 Bound To An Rna | 9e-24 | ||
| 4db2_A | 257 | Mss116p Dead-Box Helicase Domain 2 Bound To An Rna | 1e-23 | ||
| 4a4d_A | 253 | Crystal Structure Of The N-Terminal Domain Of The H | 1e-23 | ||
| 3fe2_A | 242 | Human Dead-Box Rna Helicase Ddx5 (P68), Conserved D | 1e-23 | ||
| 1vec_A | 206 | Crystal Structure Of The N-Terminal Domain Of RckP5 | 4e-23 | ||
| 3g0h_A | 424 | Human Dead-box Rna Helicase Ddx19, In Complex With | 6e-22 | ||
| 3fht_A | 412 | Crystal Structure Of Human Dbp5 In Complex With Amp | 6e-22 | ||
| 3ews_A | 445 | Human Dead-Box Rna-Helicase Ddx19 In Complex With A | 7e-22 | ||
| 3fmp_B | 479 | Crystal Structure Of The Nucleoporin Nup214 In Comp | 8e-22 | ||
| 1wrb_A | 253 | Crystal Structure Of The N-Terminal Reca-Like Domai | 2e-21 | ||
| 3fho_B | 508 | Structure Of S. Pombe Dbp5 Length = 508 | 4e-21 | ||
| 3iuy_A | 228 | Crystal Structure Of Ddx53 Dead-Box Domain Length = | 2e-19 | ||
| 1qde_A | 224 | Crystal Structure Of The Atpase Domain Of Translati | 1e-18 | ||
| 1qva_A | 223 | Yeast Initiation Factor 4a N-Terminal Domain Length | 2e-18 | ||
| 3bor_A | 237 | Crystal Structure Of The Deadc Domain Of Human Tran | 7e-17 | ||
| 1q0u_A | 219 | Crystal Structure Of The Bstdead N-Terminal Domain | 9e-17 | ||
| 2jgn_A | 185 | Ddx3 Helicase Domain Length = 185 | 6e-16 | ||
| 1t6n_A | 220 | Crystal Structure Of The N-Terminal Domain Of Human | 2e-15 | ||
| 2g9n_A | 221 | Structure Of The Dead Domain Of Human Eukaryotic In | 5e-14 | ||
| 2p6n_A | 191 | Human Dead-box Rna Helicase Ddx41, Helicase Domain | 2e-13 | ||
| 3dkp_A | 245 | Human Dead-Box Rna-Helicase Ddx52, Conserved Domain | 7e-13 | ||
| 2hjv_A | 163 | Structure Of The Second Domain (Residues 207-368) O | 1e-12 | ||
| 2kbf_A | 187 | Solution Structure Of Carboxyl-Terminal Domain Of D | 3e-12 | ||
| 2yjt_D | 170 | Crystal Structure Of E. Coli Dead-Box Protein Srmb | 5e-12 | ||
| 3peu_A | 188 | S. Cerevisiae Dbp5 L327v C-Terminal Domain Bound To | 1e-11 | ||
| 3gfp_A | 189 | Structure Of The C-Terminal Domain Of The Dead-Box | 1e-11 | ||
| 2wax_A | 193 | Structure Of The Human Ddx6 C-Terminal Domain In Co | 2e-11 | ||
| 2kbe_A | 226 | Solution Structure Of Amino-Terminal Domain Of Dbp5 | 3e-11 | ||
| 3i32_A | 300 | Dimeric Structure Of A Hera Helicase Fragment Inclu | 7e-11 | ||
| 3eaq_A | 212 | Novel Dimerization Motif In The Dead Box Rna Helica | 2e-10 | ||
| 1t5i_A | 172 | Crystal Structure Of The C-Terminal Domain Of Uap56 | 5e-10 | ||
| 3fmo_B | 300 | Crystal Structure Of The Nucleoporin Nup214 In Comp | 5e-09 | ||
| 3fhc_B | 235 | Crystal Structure Of Human Dbp5 In Complex With Nup | 5e-09 | ||
| 2rb4_A | 175 | Crystal Structure Of The Helicase Domain Of Human D | 9e-08 | ||
| 1fuk_A | 165 | Crystal Structure Of The Carboxy Terminal Domain Of | 5e-07 | ||
| 2oxc_A | 230 | Human Dead-Box Rna Helicase Ddx20, Dead Domain In C | 1e-06 | ||
| 2oxc_A | 230 | Human Dead-Box Rna Helicase Ddx20, Dead Domain In C | 1e-06 | ||
| 1oyy_A | 523 | Structure Of The Recq Catalytic Core Bound To Atp-G | 6e-06 | ||
| 1gm5_A | 780 | Structure Of Recg Bound To Three-Way Dna Junction L | 1e-05 | ||
| 1oyw_A | 523 | Structure Of The Recq Catalytic Core Length = 523 | 1e-04 | ||
| 1wp9_A | 494 | Crystal Structure Of Pyrococcus Furiosus Hef Helica | 4e-04 | ||
| 4gl2_A | 699 | Structural Basis For Dsrna Duplex Backbone Recognit | 8e-04 |
| >pdb|3SQW|A Chain A, Structure Of Mss116p (Nte Deletion) Bound To Ssrna And Amp-Pnp Length = 579 | Back alignment and structure |
|
| >pdb|3SQX|A Chain A, Structure Of Mss116p (Nte And C-Tail Double Deletion) Bound To Ssrna And Amp-Pnp Length = 512 | Back alignment and structure |
|
| >pdb|3I5X|A Chain A, Structure Of Mss116p Bound To Ssrna And Amp-Pnp Length = 563 | Back alignment and structure |
|
| >pdb|2DB3|A Chain A, Structural Basis For Rna Unwinding By The Dead-Box Protein Drosophila Vasa Length = 434 | Back alignment and structure |
|
| >pdb|2J0Q|A Chain A, The Crystal Structure Of The Exon Junction Complex At 3.2 A Resolution Length = 410 | Back alignment and structure |
|
| >pdb|2J0U|B Chain B, The Crystal Structure Of Eif4aiii-Barentsz Complex At 3.0 A Resolution Length = 374 | Back alignment and structure |
|
| >pdb|2XB2|A Chain A, Crystal Structure Of The Core Mago-Y14-Eif4aiii-Barentsz- Upf3b Assembly Shows How The Ejc Is Bridged To The Nmd Machinery Length = 411 | Back alignment and structure |
|
| >pdb|2HXY|A Chain A, Crystal Structure Of Human Apo-Eif4aiii Length = 391 | Back alignment and structure |
|
| >pdb|2HYI|C Chain C, Structure Of The Human Exon Junction Complex With A Trapped Dead-Box Helicase Bound To Rna Length = 413 | Back alignment and structure |
|
| >pdb|2I4I|A Chain A, Crystal Structure Of Human Dead-Box Rna Helicase Ddx3x Length = 417 | Back alignment and structure |
|
| >pdb|2J0U|A Chain A, The Crystal Structure Of Eif4aiii-Barentsz Complex At 3.0 A Resolution Length = 374 | Back alignment and structure |
|
| >pdb|1S2M|A Chain A, Crystal Structure Of The Dead Box Protein Dhh1p Length = 400 | Back alignment and structure |
|
| >pdb|2Z0M|A Chain A, Crystal Structure Of Hypothetical Atp-Dependent Rna Helicase From Sulfolobus Tokodaii Length = 337 | Back alignment and structure |
|
| >pdb|1HV8|A Chain A, Crystal Structure Of A Dead Box Protein From The Hyperthermophile Methanococcus Jannaschii Length = 367 | Back alignment and structure |
|
| >pdb|3LY5|A Chain A, Ddx18 Dead-Domain Length = 262 | Back alignment and structure |
|
| >pdb|2PL3|A Chain A, Human Dead-Box Rna Helicase Ddx10, Dead Domain In Complex With Adp Length = 236 | Back alignment and structure |
|
| >pdb|1XTK|A Chain A, Structure Of Decd To Dead Mutation Of Human Uap56 Length = 390 | Back alignment and structure |
|
| >pdb|1XTJ|A Chain A, Structure Of Human Uap56 In Complex With Adp Length = 386 | Back alignment and structure |
|
| >pdb|1XTI|A Chain A, Structure Of Wildtype Human Uap56 Length = 391 | Back alignment and structure |
|
| >pdb|2VSO|A Chain A, Crystal Structure Of A Translation Initiation Complex Length = 395 | Back alignment and structure |
|
| >pdb|2ZU6|A Chain A, Crystal Structure Of The Eif4a-Pdcd4 Complex Length = 388 | Back alignment and structure |
|
| >pdb|3EIQ|A Chain A, Crystal Structure Of Pdcd4-eif4a Length = 414 | Back alignment and structure |
|
| >pdb|1FUU|A Chain A, Yeast Initiation Factor 4a Length = 394 | Back alignment and structure |
|
| >pdb|3BER|A Chain A, Human Dead-Box Rna-Helicase Ddx47, Conserved Domain I In Complex With Amp Length = 249 | Back alignment and structure |
|
| >pdb|3PEW|A Chain A, S. Cerevisiae Dbp5 L327v Bound To Rna And Adp Bef3 Length = 395 | Back alignment and structure |
|
| >pdb|3PEY|A Chain A, S. Cerevisiae Dbp5 Bound To Rna And Adp Bef3 Length = 395 | Back alignment and structure |
|
| >pdb|2GXQ|A Chain A, Hera N-Terminal Domain In Complex With Amp, Crystal Form 1 Length = 207 | Back alignment and structure |
|
| >pdb|3MWJ|A Chain A, Q28e Mutant Of Hera N-Terminal Reca-Like Domain, Apo Form Length = 207 | Back alignment and structure |
|
| >pdb|4DB4|A Chain A, Mss116p Dead-Box Helicase Domain 2 Bound To A Chimaeric Rna-Dna Duplex Length = 256 | Back alignment and structure |
|
| >pdb|4DB2|C Chain C, Mss116p Dead-Box Helicase Domain 2 Bound To An Rna Duplex Length = 257 | Back alignment and structure |
|
| >pdb|4DB2|A Chain A, Mss116p Dead-Box Helicase Domain 2 Bound To An Rna Duplex Length = 257 | Back alignment and structure |
|
| >pdb|4A4D|A Chain A, Crystal Structure Of The N-Terminal Domain Of The Human Dead-Box Rna Helicase Ddx5 (P68) Length = 253 | Back alignment and structure |
|
| >pdb|3FE2|A Chain A, Human Dead-Box Rna Helicase Ddx5 (P68), Conserved Domain I In Complex With Adp Length = 242 | Back alignment and structure |
|
| >pdb|1VEC|A Chain A, Crystal Structure Of The N-Terminal Domain Of RckP54, A Human Dead-Box Protein Length = 206 | Back alignment and structure |
|
| >pdb|3G0H|A Chain A, Human Dead-box Rna Helicase Ddx19, In Complex With An Atp-analogue And Rna Length = 424 | Back alignment and structure |
|
| >pdb|3FHT|A Chain A, Crystal Structure Of Human Dbp5 In Complex With Amppnp And Rna Length = 412 | Back alignment and structure |
|
| >pdb|3EWS|A Chain A, Human Dead-Box Rna-Helicase Ddx19 In Complex With Adp Length = 445 | Back alignment and structure |
|
| >pdb|3FMP|B Chain B, Crystal Structure Of The Nucleoporin Nup214 In Complex With The Dead- Box Helicase Ddx19 Length = 479 | Back alignment and structure |
|
| >pdb|1WRB|A Chain A, Crystal Structure Of The N-Terminal Reca-Like Domain Of Djvlgb, A Pranarian Vasa-Like Rna Helicase Length = 253 | Back alignment and structure |
|
| >pdb|3IUY|A Chain A, Crystal Structure Of Ddx53 Dead-Box Domain Length = 228 | Back alignment and structure |
|
| >pdb|1QDE|A Chain A, Crystal Structure Of The Atpase Domain Of Translation Initiation Factor 4a From Saccharomyces Cerevisiae-The Prototype Of The Dead Box Protein Family Length = 224 | Back alignment and structure |
|
| >pdb|1QVA|A Chain A, Yeast Initiation Factor 4a N-Terminal Domain Length = 223 | Back alignment and structure |
|
| >pdb|3BOR|A Chain A, Crystal Structure Of The Deadc Domain Of Human Translation Initiation Factor 4a-2 Length = 237 | Back alignment and structure |
|
| >pdb|1Q0U|A Chain A, Crystal Structure Of The Bstdead N-Terminal Domain Length = 219 | Back alignment and structure |
|
| >pdb|2JGN|A Chain A, Ddx3 Helicase Domain Length = 185 | Back alignment and structure |
|
| >pdb|1T6N|A Chain A, Crystal Structure Of The N-Terminal Domain Of Human Uap56 Length = 220 | Back alignment and structure |
|
| >pdb|2G9N|A Chain A, Structure Of The Dead Domain Of Human Eukaryotic Initiation Factor 4a, Eif4a Length = 221 | Back alignment and structure |
|
| >pdb|2P6N|A Chain A, Human Dead-box Rna Helicase Ddx41, Helicase Domain Length = 191 | Back alignment and structure |
|
| >pdb|3DKP|A Chain A, Human Dead-Box Rna-Helicase Ddx52, Conserved Domain I In Complex With Adp Length = 245 | Back alignment and structure |
|
| >pdb|2HJV|A Chain A, Structure Of The Second Domain (Residues 207-368) Of The Bacillus Subtilis Yxin Protein Length = 163 | Back alignment and structure |
|
| >pdb|2KBF|A Chain A, Solution Structure Of Carboxyl-Terminal Domain Of Dbp5p Length = 187 | Back alignment and structure |
|
| >pdb|2YJT|D Chain D, Crystal Structure Of E. Coli Dead-Box Protein Srmb Bound To Regulator Of Ribonuclease Activity A (Rraa) Length = 170 | Back alignment and structure |
|
| >pdb|3PEU|A Chain A, S. Cerevisiae Dbp5 L327v C-Terminal Domain Bound To Gle1 H337r And Ip6 Length = 188 | Back alignment and structure |
|
| >pdb|3GFP|A Chain A, Structure Of The C-Terminal Domain Of The Dead-Box Protein Dbp5 Length = 189 | Back alignment and structure |
|
| >pdb|2WAX|A Chain A, Structure Of The Human Ddx6 C-Terminal Domain In Complex With An Edc3-Fdf Peptide Length = 193 | Back alignment and structure |
|
| >pdb|2KBE|A Chain A, Solution Structure Of Amino-Terminal Domain Of Dbp5p Length = 226 | Back alignment and structure |
|
| >pdb|3I32|A Chain A, Dimeric Structure Of A Hera Helicase Fragment Including The C-Terminal Reca Domain, The Dimerization Domain, And The Rna Binding Domain Length = 300 | Back alignment and structure |
|
| >pdb|3EAQ|A Chain A, Novel Dimerization Motif In The Dead Box Rna Helicase Hera Form 2, Complete Dimer, Symmetric Length = 212 | Back alignment and structure |
|
| >pdb|1T5I|A Chain A, Crystal Structure Of The C-Terminal Domain Of Uap56 Length = 172 | Back alignment and structure |
|
| >pdb|3FMO|B Chain B, Crystal Structure Of The Nucleoporin Nup214 In Complex With The Dead- Box Helicase Ddx19 Length = 300 | Back alignment and structure |
|
| >pdb|3FHC|B Chain B, Crystal Structure Of Human Dbp5 In Complex With Nup214 Length = 235 | Back alignment and structure |
|
| >pdb|2RB4|A Chain A, Crystal Structure Of The Helicase Domain Of Human Ddx25 Rna Helicase Length = 175 | Back alignment and structure |
|
| >pdb|1FUK|A Chain A, Crystal Structure Of The Carboxy Terminal Domain Of Yeast Eif4a Length = 165 | Back alignment and structure |
|
| >pdb|2OXC|A Chain A, Human Dead-Box Rna Helicase Ddx20, Dead Domain In Complex With Adp Length = 230 | Back alignment and structure |
|
| >pdb|2OXC|A Chain A, Human Dead-Box Rna Helicase Ddx20, Dead Domain In Complex With Adp Length = 230 | Back alignment and structure |
|
| >pdb|1OYY|A Chain A, Structure Of The Recq Catalytic Core Bound To Atp-Gamma-S Length = 523 | Back alignment and structure |
|
| >pdb|1GM5|A Chain A, Structure Of Recg Bound To Three-Way Dna Junction Length = 780 | Back alignment and structure |
|
| >pdb|1OYW|A Chain A, Structure Of The Recq Catalytic Core Length = 523 | Back alignment and structure |
|
| >pdb|1WP9|A Chain A, Crystal Structure Of Pyrococcus Furiosus Hef Helicase Domain Length = 494 | Back alignment and structure |
|
| >pdb|4GL2|A Chain A, Structural Basis For Dsrna Duplex Backbone Recognition By Mda5 Length = 699 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* Length = 563 | Back alignment and structure |
|---|
Score = 361 bits (929), Expect = e-114
Identities = 141/572 (24%), Positives = 250/572 (43%), Gaps = 58/572 (10%)
Query: 352 KKTEVKSGPISSLFQNNPDIPNVPTRRLKPVSEALFAPTSYEEFPGIHPFMKKNLNEGMN 411
+ + + + + S+ + + EE + + K + M
Sbjct: 34 RPRTRSREDDDEVHFDKTTFSKLIHVPKEDNSKEVTLDSLLEEG-VLDKEIHKAITR-ME 91
Query: 412 ITQVTTVQQLSIQPILDG--GDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYA 469
+T VQQ +I+PIL DV+ R++TG+GKT A+ IPI Q L + K + + A
Sbjct: 92 FPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHL--INTKFDSQYMVKA 149
Query: 470 VIILPTRELALQTLEIFTKLCKSFTWIVPSWLT---GGEKMKSEKARIRK-GISILVATP 525
VI+ PTR+LALQ K+ + GG ++ ++ K +I++ATP
Sbjct: 150 VIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATP 209
Query: 526 GRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQF----QSIL 581
GRL+D + F V++ VLDEADR+L+ G+ D+ IL ++ + +++L
Sbjct: 210 GRLIDVLEKYSNKFFRFVDYKVLDEADRLLEIGFRDDLETISGILNEKNSKSADNIKTLL 269
Query: 582 LSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKL-RLVA 640
SATL VQ+LA + + + + Q +++ + A
Sbjct: 270 FSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEA-----HERIDQSVVISEKFANSIFA 324
Query: 641 LASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERT 700
I Q D K ++F T + +L +++ + HG ++Q++RT
Sbjct: 325 AVEHIK--KQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRT 382
Query: 701 EVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSS 760
+ K F+ +SG+L+CTDV ARG+D P V ++Q PS +Y+HR+GRTAR G EGSS
Sbjct: 383 SLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSS 442
Query: 761 LLFLIPSEVKLVEELQN-RRIRIEEIKLKDCLQNLLSVKMEGDLSRLADGNVETAATALQ 819
+LF+ E+ V EL++ + I I + + + + + + ++ E +
Sbjct: 443 VLFICKDELPFVRELEDAKNIVIAKQEKYEPSEEI-----KSEVLEAVTEEPEDIS---- 493
Query: 820 MSFESAVLQQKILHTSACKGYTSWVRFYASYSKDLRHIFNFKQIHLGHFAKSFA-LRDAP 878
S + Y S K+ F+ ++I L A ++ L + P
Sbjct: 494 ------------------DIVISLISSYRSCIKEY--RFSERRI-LPEIASTYGVLLNDP 532
Query: 879 SVISGIG-KPKNKEELKNKKMAINKEKSFKQR 909
+ + + +K L + + F+ R
Sbjct: 533 QLKIPVSRRFLDKLGLSRSPIG---KAMFEIR 561
|
| >3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* Length = 563 | Back alignment and structure |
|---|
Score = 197 bits (502), Expect = 3e-54
Identities = 81/342 (23%), Positives = 130/342 (38%), Gaps = 73/342 (21%)
Query: 1 MNITQVTTVQQLSIQPILDG--GDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGI 58
M +T VQQ +I+PIL DV+ R++TG+GKT A+ IPI Q L + K + +
Sbjct: 90 MEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHL--INTKFDSQYMV 147
Query: 59 YAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLT---GGEKMKSEKARIRK-GISILVA 114
AVI+ PTR+LALQ K+ + GG ++ ++ K +I++A
Sbjct: 148 KAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIA 207
Query: 115 TPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLS 174
TPGRL+D + F V++ VLDEADR+L+ G+ D+ IL ++ +
Sbjct: 208 TPGRLIDVLEKYSNKFFRFVDYKVLDEADRLLEIGFRDDLETISGILNEKNSKSAD---- 263
Query: 175 ATLTPATCWCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLL 234
+ +TL FS
Sbjct: 264 -----------NIKTLLFS----------------------------------------- 271
Query: 235 SATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKL-RLVAL 293
ATL VQ+LA + + + + Q +++ + A
Sbjct: 272 -ATLDDKVQKLANNIMNKKECLFLDTVDKNEPEA-----HERIDQSVVISEKFANSIFAA 325
Query: 294 ASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTKKKI 335
I Q D K ++F T + +L + K
Sbjct: 326 VEHIK--KQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKK 365
|
| >3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C} Length = 579 | Back alignment and structure |
|---|
Score = 360 bits (926), Expect = e-114
Identities = 139/545 (25%), Positives = 242/545 (44%), Gaps = 54/545 (9%)
Query: 383 SEALFAPTSYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDG--GDVLVRSQTGS 440
S+ + + EE + + K + M +T VQQ +I+PIL DV+ R++TG+
Sbjct: 14 SKEVTLDSLLEEG-VLDKEIHKAITR-MEFPGLTPVQQKTIKPILSSEDHDVIARAKTGT 71
Query: 441 GKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSW 500
GKT A+ IPI Q L + K + + AVI+ PTR+LALQ K+ +
Sbjct: 72 GKTFAFLIPIFQHL--INTKFDSQYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYA 129
Query: 501 LT---GGEKMKSEKARIRK-GISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILD 556
GG ++ ++ K +I++ATPGRL+D + F V++ VLDEADR+L+
Sbjct: 130 CVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRLLE 189
Query: 557 QGYERDIAEFLEILKKQK----PQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDI 612
G+ D+ IL ++ +++L SATL VQ+LA + +
Sbjct: 190 IGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKN 249
Query: 613 HNTTDSLVIPDSLKQHFIVTPPKL-RLVALASFILGKCQNVNEDEESKMLVFMATQDMAD 671
+ + Q +++ + A I Q D K ++F T
Sbjct: 250 EPEA-----HERIDQSVVISEKFANSIFAAVEHIK--KQIKERDSNYKAIIFAPTVKFTS 302
Query: 672 YHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDW 731
+ +L +++ + HG ++Q++RT + K F+ +SG+L+CTDV ARG+D P V
Sbjct: 303 FLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHE 362
Query: 732 IVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPSEVKLVEELQN-RRIRIEEIKLKDC 790
++Q PS +Y+HR+GRTAR G EGSS+LF+ E+ V EL++ + I I + + +
Sbjct: 363 VLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELEDAKNIVIAKQEKYEP 422
Query: 791 LQNLLSVKMEGDLSRLADGNVETAATALQMSFESAVLQQKILHTSACKGYTSWVRFYASY 850
+ + + ++ E + S + Y S
Sbjct: 423 SEEI-----KSEVLEAVTEEPEDIS----------------------DIVISLISSYRSC 455
Query: 851 SKDLRHIFNFKQIHLGHFAKSFALRDAPSVISGIGKPKNKEELKNKKMAINKEKSFKQRG 910
K+ F+ ++I L A ++ + + I + + + + F+ R
Sbjct: 456 IKEY--RFSERRI-LPEIASTYGVLLNDPQLK-IPVSRRFLDKLGLSRSPIGKAMFEIRD 511
Query: 911 NFSKK 915
S+
Sbjct: 512 YSSRD 516
|
| >3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C} Length = 579 | Back alignment and structure |
|---|
Score = 196 bits (501), Expect = 6e-54
Identities = 81/342 (23%), Positives = 130/342 (38%), Gaps = 73/342 (21%)
Query: 1 MNITQVTTVQQLSIQPILDG--GDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGI 58
M +T VQQ +I+PIL DV+ R++TG+GKT A+ IPI Q L + K + +
Sbjct: 39 MEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHL--INTKFDSQYMV 96
Query: 59 YAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLT---GGEKMKSEKARIRK-GISILVA 114
AVI+ PTR+LALQ K+ + GG ++ ++ K +I++A
Sbjct: 97 KAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIA 156
Query: 115 TPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLS 174
TPGRL+D + F V++ VLDEADR+L+ G+ D+ IL ++ +
Sbjct: 157 TPGRLIDVLEKYSNKFFRFVDYKVLDEADRLLEIGFRDDLETISGILNEKNSKSAD---- 212
Query: 175 ATLTPATCWCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLL 234
+ +TL FS
Sbjct: 213 -----------NIKTLLFS----------------------------------------- 220
Query: 235 SATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKL-RLVAL 293
ATL VQ+LA + + + + Q +++ + A
Sbjct: 221 -ATLDDKVQKLANNIMNKKECLFLDTVDKNEPEA-----HERIDQSVVISEKFANSIFAA 274
Query: 294 ASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTKKKI 335
I Q D K ++F T + +L + K
Sbjct: 275 VEHIK--KQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKK 314
|
| >1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A Length = 400 | Back alignment and structure |
|---|
Score = 268 bits (688), Expect = 1e-81
Identities = 96/371 (25%), Positives = 181/371 (48%), Gaps = 32/371 (8%)
Query: 416 TTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPT 475
+ +Q+ +I + G D+L R++ G+GKT A+ IP ++K++ KI A+I++PT
Sbjct: 45 SPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKPKLNKIQ------ALIMVPT 98
Query: 476 RELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHT 535
RELALQT ++ L K I TGG ++ + R+ + + ILV TPGR+LD
Sbjct: 99 RELALQTSQVVRTLGK-HCGISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASR- 156
Query: 536 ETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAG 595
+ S ++DEAD++L + ++ I + IL P QS+L SAT V+
Sbjct: 157 KVADLSDCSLFIMDEADKMLSRDFKTIIEQ---ILSFLPPTHQSLLFSATFPLTVKEFMV 213
Query: 596 MTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALASFILGKCQNVNED 655
L P +I+ + + + Q++ + +L L ++
Sbjct: 214 KHLHKPYEINLMEELTLKG----------ITQYYAFVEERQKLHCL-------NTLFSKL 256
Query: 656 EESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSVKSGVLI 715
+ ++ ++F + + + + ++ + + H M Q ER +VF FR K L+
Sbjct: 257 QINQAIIFCNSTNRVELLAKKIT---DLGYSCYYSHARMKQQERNKVFHEFRQGKVRTLV 313
Query: 716 CTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPSEVKLVEEL 775
C+D+ RG+D+ V+ ++ + P ++ Y+HR+GR+ R GH G ++ + ++ + ++
Sbjct: 314 CSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLINWNDRFNLYKI 373
Query: 776 QNR-RIRIEEI 785
+ I I
Sbjct: 374 EQELGTEIAAI 384
|
| >1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A Length = 400 | Back alignment and structure |
|---|
Score = 157 bits (399), Expect = 7e-42
Identities = 59/174 (33%), Positives = 95/174 (54%), Gaps = 11/174 (6%)
Query: 7 TTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPT 66
+ +Q+ +I + G D+L R++ G+GKT A+ IP ++K++ KI A+I++PT
Sbjct: 45 SPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKPKLNKIQ------ALIMVPT 98
Query: 67 RELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHT 126
RELALQT ++ L K I TGG ++ + R+ + + ILV TPGR+LD
Sbjct: 99 RELALQTSQVVRTLGK-HCGISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASR- 156
Query: 127 ETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPA 180
+ S ++DEAD++L + ++ I +IL P QS+L SAT
Sbjct: 157 KVADLSDCSLFIMDEADKMLSRDFKTIIE---QILSFLPPTHQSLLFSATFPLT 207
|
| >2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster} Length = 434 | Back alignment and structure |
|---|
Score = 265 bits (679), Expect = 6e-80
Identities = 123/449 (27%), Positives = 200/449 (44%), Gaps = 54/449 (12%)
Query: 339 KEYNIDPDNYEIPKKTEVKSGPISSLFQNNPDIP------NVPTRRLKPVSEALFAPTSY 392
E+ I P+ + F +IP +VP +P+ +
Sbjct: 10 GEFYIPPEPSNDAIEIFSSGIASGIHFSKYNNIPVKVTGSDVP----QPI-------QHF 58
Query: 393 EEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQ 452
+ + N+N+ T +Q+ SI I G D++ +QTGSGKT A+ +PI+
Sbjct: 59 TS-ADLRDIIIDNVNK-SGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILS 116
Query: 453 KLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKA 512
KL E P VI+ PTRELA+Q K +++ + GG + +
Sbjct: 117 KLLE-DPHELELGRPQVVIVSPTRELAIQIFNEARKFAFE-SYLKIGIVYGGTSFRHQNE 174
Query: 513 RIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKK 572
I +G +++ATPGRLLD + F +VLDEADR+LD G+ D+ + +
Sbjct: 175 CITRGCHVVIATPGRLLDFVD-RTFITFEDTRFVVLDEADRMLDMGFSEDMRRIMTHVT- 232
Query: 573 QKPQFQSILLSATLTPAVQRLAGMTLQNPIQI-----DAADSTDIHNTTDSLVIPDSLKQ 627
+P+ Q+++ SAT +QR+AG L+N + + A +D+ KQ
Sbjct: 233 MRPEHQTLMFSATFPEEIQRMAGEFLKNYVFVAIGIVGGA-CSDV-------------KQ 278
Query: 628 HFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAF 687
+ L + ++ +VF+ T+ AD+ LS +
Sbjct: 279 TIYEVNKYAKRSKLIEIL--------SEQADGTIVFVETKRGADFLASFLSE---KEFPT 327
Query: 688 FKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHR 747
+HG QS+R + + F++ VLI T VA+RGLD+ + ++ Y PS DYVHR
Sbjct: 328 TSIHGDRLQSQREQALRDFKNGSMKVLIATSVASRGLDIKNIKHVINYDMPSKIDDYVHR 387
Query: 748 VGRTARVGHEGSSLLFLIP-SEVKLVEEL 775
+GRT RVG+ G + F P + + +L
Sbjct: 388 IGRTGRVGNNGRATSFFDPEKDRAIAADL 416
|
| >2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster} Length = 434 | Back alignment and structure |
|---|
Score = 156 bits (398), Expect = 2e-41
Identities = 80/331 (24%), Positives = 126/331 (38%), Gaps = 92/331 (27%)
Query: 7 TTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPT 66
T +Q+ SI I G D++ +QTGSGKT A+ +PI+ KL E P VI+ PT
Sbjct: 80 TPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLE-DPHELELGRPQVVIVSPT 138
Query: 67 RELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHT 126
RELA+Q K +++ + GG + + I +G +++ATPGRLLD
Sbjct: 139 RELAIQIFNEARKFAFE-SYLKIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVD-R 196
Query: 127 ETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPATCWCKH 186
+ F +VLDEADR+LD G+ + I+ T+ P
Sbjct: 197 TFITFEDTRFVVLDEADRMLDMGFS--------------EDMRRIMTHVTMRP------- 235
Query: 187 TETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLTPAVQRLA 246
+ Q+++ SAT +QR+A
Sbjct: 236 -----------------EH------------------------QTLMFSATFPEEIQRMA 254
Query: 247 GMTLQNPIQI-----DAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALASFILGKC 301
G L+N + + A +D+ KQ + L +
Sbjct: 255 GEFLKNYVFVAIGIVGGA-CSDV-------------KQTIYEVNKYAKRSKLIEIL---- 296
Query: 302 QNVNEDEESKMLVFMATQDMADYHTELLSTK 332
++ +VF+ T+ AD+ LS K
Sbjct: 297 ----SEQADGTIVFVETKRGADFLASFLSEK 323
|
| >2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens} Length = 417 | Back alignment and structure |
|---|
Score = 262 bits (671), Expect = 5e-79
Identities = 120/423 (28%), Positives = 191/423 (45%), Gaps = 60/423 (14%)
Query: 373 NVPTRRLKPVSEALFAPTSYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDV 432
N P + S+ + + + N+ T+ T VQ+ +I I + D+
Sbjct: 9 NCP----PHI-------ESFSD-VEMGEIIMGNIEL-TRYTRPTPVQKHAIPIIKEKRDL 55
Query: 433 LVRSQTGSGKTLAYAIPIIQKL------------QEMRPKISRKDGIYAVIILPTRELAL 480
+ +QTGSGKT A+ +PI+ ++ +E RK ++++ PTRELA+
Sbjct: 56 MACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAV 115
Query: 481 QTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKF 540
Q E K + + P + GG + + + +G +LVATPGRL+D + +
Sbjct: 116 QIYEEARKFSYR-SRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMME-RGKIGL 173
Query: 541 SKVEHLVLDEADRILDQGYE---RDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMT 597
++LVLDEADR+LD G+E R I E + K +++ SAT +Q LA
Sbjct: 174 DFCKYLVLDEADRMLDMGFEPQIRRIVEQDTM--PPKGVRHTMMFSATFPKEIQMLARDF 231
Query: 598 LQNPIQI-----DAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALASFILGKCQNV 652
L I + + S +I Q + + L +
Sbjct: 232 LDEYIFLAVGRVGST-SENI-------------TQKVVWVEESDKRSFLLDLLN------ 271
Query: 653 NEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSVKSG 712
++S LVF+ T+ AD + L E A +HG SQ +R E FRS KS
Sbjct: 272 ATGKDSLTLVFVETKKGADSLEDFLYH---EGYACTSIHGDRSQRDREEALHQFRSGKSP 328
Query: 713 VLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPSEVKLV 772
+L+ T VAARGLD+ V ++ + PS +YVHR+GRT RVG+ G + F + +
Sbjct: 329 ILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINIT 388
Query: 773 EEL 775
++L
Sbjct: 389 KDL 391
|
| >2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens} Length = 417 | Back alignment and structure |
|---|
Score = 149 bits (380), Expect = 4e-39
Identities = 79/344 (22%), Positives = 130/344 (37%), Gaps = 99/344 (28%)
Query: 7 TTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKL------------QEMRPKISR 54
T VQ+ +I I + D++ +QTGSGKT A+ +PI+ ++ +E R
Sbjct: 39 TPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENGRYGRR 98
Query: 55 KDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVA 114
K ++++ PTRELA+Q E K + + P + GG + + + +G +LVA
Sbjct: 99 KQYPISLVLAPTRELAVQIYEEARKFSYR-SRVRPCVVYGGADIGQQIRDLERGCHLLVA 157
Query: 115 TPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLS 174
TPGRL+D + + ++LVLDEADR+LD G+E PQ + I+
Sbjct: 158 TPGRLVDMME-RGKIGLDFCKYLVLDEADRMLDMGFE--------------PQIRRIVEQ 202
Query: 175 ATLTPATCWCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLL 234
T+ P K +++
Sbjct: 203 DTMPP----------------------------------------------KGVRHTMMF 216
Query: 235 SATLTPAVQRLAGMTLQNPIQI-----DAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLR 289
SAT +Q LA L I + + S +I Q + +
Sbjct: 217 SATFPKEIQMLARDFLDEYIFLAVGRVGST-SENI-------------TQKVVWVEESDK 262
Query: 290 LVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTKK 333
L + ++S LVF+ T+ AD + L +
Sbjct: 263 RSFLLDLLN------ATGKDSLTLVFVETKKGADSLEDFLYHEG 300
|
| >1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19 Length = 367 | Back alignment and structure |
|---|
Score = 253 bits (649), Expect = 1e-76
Identities = 103/394 (26%), Positives = 192/394 (48%), Gaps = 42/394 (10%)
Query: 397 GIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGG-DVLVRSQTGSGKTLAYAIPIIQKLQ 455
+ + + + T +Q I L+ +++ +++TGSGKT ++AIP+I+
Sbjct: 12 NLSDNILNAIRN-KGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIEL-- 68
Query: 456 EMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCK-SFTWIVPSWLTGGEKMKSEKARI 514
++ +GI A+I+ PTRELA+Q + L I + GG+ + + +
Sbjct: 69 -----VNENNGIEAIILTPTRELAIQVADEIESLKGNKNLKIAK--IYGGKAIYPQIKAL 121
Query: 515 RKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQK 574
+ +I+V TPGR+LDH TL V++ +LDEAD +L+ G+ +D+ + IL
Sbjct: 122 KNA-NIVVGTPGRILDHINR-GTLNLKNVKYFILDEADEMLNMGFIKDVEK---ILNACN 176
Query: 575 PQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPP 634
+ +L SAT+ + LA + + I A + +I +Q ++
Sbjct: 177 KDKRILLFSATMPREILNLAKKYMGDYSFIKAKINANI-------------EQSYVEVNE 223
Query: 635 KLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSM 694
R AL + +++E LVF T+ +L +G +HG +
Sbjct: 224 NERFEALCRLL--------KNKEFYGLVFCKTKRDTKELASMLRD-IGFKAG--AIHGDL 272
Query: 695 SQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARV 754
SQS+R +V + F+ K +LI TDV +RG+D+ ++ ++ Y P + Y+HR+GRT R
Sbjct: 273 SQSQREKVIRLFKQKKIRILIATDVMSRGIDVNDLNCVINYHLPQNPESYMHRIGRTGRA 332
Query: 755 GHEGSSLLFLIPSEVKLVEELQNR-RIRIEEIKL 787
G +G ++ + E K + ++ +++I+++K
Sbjct: 333 GKKGKAISIINRREYKKLRYIERAMKLKIKKLKF 366
|
| >1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19 Length = 367 | Back alignment and structure |
|---|
Score = 138 bits (351), Expect = 8e-36
Identities = 55/182 (30%), Positives = 96/182 (52%), Gaps = 16/182 (8%)
Query: 1 MNITQVTTVQQLSIQPILDGG-DVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIY 59
+ T +Q I L+ +++ +++TGSGKT ++AIP+I+ ++ +GI
Sbjct: 24 KGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIE-------LVNENNGIE 76
Query: 60 AVIILPTRELALQTLEIFTKLCK-SFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGR 118
A+I+ PTRELA+Q + L I + GG+ + + ++ +I+V TPGR
Sbjct: 77 AIILTPTRELAIQVADEIESLKGNKNLKIAK--IYGGKAIYPQIKALKNA-NIVVGTPGR 133
Query: 119 LLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLT 178
+LDH TL V++ +LDEAD +L+ G+ +D+ +IL + +L SAT+
Sbjct: 134 ILDHINR-GTLNLKNVKYFILDEADEMLNMGFIKDVE---KILNACNKDKRILLFSATMP 189
Query: 179 PA 180
Sbjct: 190 RE 191
|
| >1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19 Length = 367 | Back alignment and structure |
|---|
Score = 71.4 bits (176), Expect = 3e-13
Identities = 32/144 (22%), Positives = 58/144 (40%), Gaps = 24/144 (16%)
Query: 189 TLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLTPAVQRLAGM 248
TL V++ +LDEAD +L+ G+ +D+ +IL + +L SAT+ + LA
Sbjct: 142 TLNLKNVKYFILDEADEMLNMGFIKDVE---KILNACNKDKRILLFSATMPREILNLAKK 198
Query: 249 TLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALASFILGKCQNVNEDE 308
+ + I A + +I +Q ++ R AL + +++
Sbjct: 199 YMGDYSFIKAKINANI-------------EQSYVEVNENERFEALCRLL--------KNK 237
Query: 309 ESKMLVFMATQDMADYHTELLSTK 332
E LVF T+ +L
Sbjct: 238 EFYGLVFCKTKRDTKELASMLRDI 261
|
| >1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A Length = 391 | Back alignment and structure |
|---|
Score = 252 bits (647), Expect = 6e-76
Identities = 94/401 (23%), Positives = 196/401 (48%), Gaps = 36/401 (8%)
Query: 390 TSYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIP 449
+ + +F + P + + + + + VQ I + G DVL ++++G GKT + +
Sbjct: 8 SGFRDF-LLKPELLRAIVD-CGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLA 65
Query: 450 IIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKS 509
+Q+L+ + ++S +++ TRELA Q + + + K + + GG +K
Sbjct: 66 TLQQLEPVTGQVS------VLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKK 119
Query: 510 EKARIRKGIS-ILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQ-GYERDIAEFL 567
++ ++K I+V TPGR+L + ++L ++H +LDE D++L+Q RD+ E
Sbjct: 120 DEEVLKKNCPHIVVGTPGRILALAR-NKSLNLKHIKHFILDECDKMLEQLDMRRDVQE-- 176
Query: 568 EILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQ 627
I + + Q ++ SATL+ ++ + +Q+P++I D T + T L +Q
Sbjct: 177 -IFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKL--TLHGL------QQ 227
Query: 628 HFIVTPPKLRLVALASFILGKCQNVNEDEE-SKMLVFMATQDMADYHTELLSTVLGENIA 686
+++ + L + + E +++++F+ + +LL +N
Sbjct: 228 YYVKLKDNEKNRKLFDLL--------DVLEFNQVVIFVKSVQRCIALAQLLV---EQNFP 276
Query: 687 FFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVH 746
+H M Q ER ++ F+ + +L+ T++ RG+D+ V+ Y P S Y+H
Sbjct: 277 AIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLH 336
Query: 747 RVGRTARVGHEGSSLLFL-IPSEVKLVEELQNR-RIRIEEI 785
RV R R G +G ++ F+ ++ K++ ++Q+R + I E+
Sbjct: 337 RVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISEL 377
|
| >1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A Length = 391 | Back alignment and structure |
|---|
Score = 147 bits (373), Expect = 2e-38
Identities = 49/176 (27%), Positives = 93/176 (52%), Gaps = 12/176 (6%)
Query: 7 TTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPT 66
+ VQ I + G DVL ++++G GKT + + +Q+L+ + ++S +++ T
Sbjct: 32 SEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVS------VLVMCHT 85
Query: 67 RELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGIS-ILVATPGRLLDHCKH 125
RELA Q + + + K + + GG +K ++ ++K I+V TPGR+L +
Sbjct: 86 RELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALAR- 144
Query: 126 TETLKFSKVEHLVLDEADRILDQ-GYERDIAEFLEILKKQKPQFQSILLSATLTPA 180
++L ++H +LDE D++L+Q RD+ EI + + Q ++ SATL+
Sbjct: 145 NKSLNLKHIKHFILDECDKMLEQLDMRRDVQ---EIFRMTPHEKQVMMFSATLSKE 197
|
| >2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii} Length = 337 | Back alignment and structure |
|---|
Score = 248 bits (635), Expect = 5e-75
Identities = 101/356 (28%), Positives = 171/356 (48%), Gaps = 46/356 (12%)
Query: 416 TTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPT 475
T VQ +I +L G +V+VR++TGSGKT AYAIPI++ G+ ++++ PT
Sbjct: 18 TEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPILEL------------GMKSLVVTPT 65
Query: 476 RELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHT 535
REL Q + + + + + GG K++ R+R I+VATPGRLLD
Sbjct: 66 RELTRQVASHIRDIGR-YMDTKVAEVYGGMPYKAQINRVR-NADIVVATPGRLLDLWSK- 122
Query: 536 ETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAG 595
+ S E +++DEAD + + G+ DI L +K + L SAT+ ++++
Sbjct: 123 GVIDLSSFEIVIIDEADLMFEMGFIDDIKIILAQTSNRK---ITGLFSATIPEEIRKVVK 179
Query: 596 MTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALASFILGKCQNVNED 655
+ N +I+A + V + F+ R + + E+
Sbjct: 180 DFITNYEEIEAC-------IGLANV-----EHKFVHVKDDWR--SKVQAL-------REN 218
Query: 656 EESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSVKSGVLI 715
++ ++VF+ T++ L + L G + QS R FR + +LI
Sbjct: 219 KDKGVIVFVRTRNRVAKLVRLFDNAIE-------LRGDLPQSVRNRNIDAFREGEYDMLI 271
Query: 716 CTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPSEVKL 771
TDVA+RGLD+PLV+ ++ + AP Y+HR+GRT R+G +G ++ F++
Sbjct: 272 TTDVASRGLDIPLVEKVINFDAPQDLRTYIHRIGRTGRMGRKGEAITFILNEYWLE 327
|
| >2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii} Length = 337 | Back alignment and structure |
|---|
Score = 146 bits (371), Expect = 9e-39
Identities = 58/174 (33%), Positives = 90/174 (51%), Gaps = 18/174 (10%)
Query: 7 TTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPT 66
T VQ +I +L G +V+VR++TGSGKT AYAIPI++ G+ ++++ PT
Sbjct: 18 TEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPILEL------------GMKSLVVTPT 65
Query: 67 RELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHT 126
REL Q + + + + + GG K++ R+R I+VATPGRLLD
Sbjct: 66 RELTRQVASHIRDIGR-YMDTKVAEVYGGMPYKAQINRVR-NADIVVATPGRLLDLWSK- 122
Query: 127 ETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPA 180
+ S E +++DEAD + + G+ DI L +K + L SAT+
Sbjct: 123 GVIDLSSFEIVIIDEADLMFEMGFIDDIKIILAQTSNRK---ITGLFSATIPEE 173
|
| >2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A Length = 410 | Back alignment and structure |
|---|
Score = 249 bits (639), Expect = 1e-74
Identities = 109/379 (28%), Positives = 192/379 (50%), Gaps = 42/379 (11%)
Query: 416 TTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPT 475
+ +QQ +I+ I+ G DV+ +SQ+G+GKT ++I ++Q L + A+I+ PT
Sbjct: 61 SAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQ------ALILAPT 114
Query: 476 RELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHT 535
RELA+Q + L + + GG + + ++ G ++ TPGR+ D +
Sbjct: 115 RELAVQIQKGLLALGD-YMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRR- 172
Query: 536 ETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAG 595
+L+ ++ LVLDEAD +L++G++ I + + + P Q +L+SATL + +
Sbjct: 173 RSLRTRAIKMLVLDEADEMLNKGFKEQIYD---VYRYLPPATQVVLISATLPHEILEMTN 229
Query: 596 MTLQNPIQIDAADSTDIHNTTDSLVIPDSL-----KQHFI-VTPPKLRLVALASFILGKC 649
+ +PI+I LV D L KQ F+ V + + L C
Sbjct: 230 KFMTDPIRI--------------LVKRDELTLEGIKQFFVAVEREEWKFDTL-------C 268
Query: 650 QNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSV 709
+ ++ ++F T+ D+ TE + N +HG M Q ER + K FRS
Sbjct: 269 DLYDTLTITQAVIFCNTKRKVDWLTEKMR---EANFTVSSMHGDMPQKERESIMKEFRSG 325
Query: 710 KSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPSEV 769
S VLI TDV ARGLD+P V I+ Y P++ Y+HR+GR+ R G +G ++ F+ ++
Sbjct: 326 ASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDI 385
Query: 770 KLVEELQNR-RIRIEEIKL 787
+++ +++ +I+E+ +
Sbjct: 386 RILRDIEQYYSTQIDEMPM 404
|
| >2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A Length = 410 | Back alignment and structure |
|---|
Score = 149 bits (378), Expect = 5e-39
Identities = 52/174 (29%), Positives = 94/174 (54%), Gaps = 11/174 (6%)
Query: 7 TTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPT 66
+ +QQ +I+ I+ G DV+ +SQ+G+GKT ++I ++Q L + A+I+ PT
Sbjct: 61 SAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQ------ALILAPT 114
Query: 67 RELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHT 126
RELA+Q + L + + GG + + ++ G ++ TPGR+ D +
Sbjct: 115 RELAVQIQKGLLALGD-YMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRR- 172
Query: 127 ETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPA 180
+L+ ++ LVLDEAD +L++G++ I ++ + P Q +L+SATL
Sbjct: 173 RSLRTRAIKMLVLDEADEMLNKGFKEQIY---DVYRYLPPATQVVLISATLPHE 223
|
| >1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A* Length = 394 | Back alignment and structure |
|---|
Score = 247 bits (632), Expect = 8e-74
Identities = 104/377 (27%), Positives = 180/377 (47%), Gaps = 43/377 (11%)
Query: 416 TTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPT 475
+ +QQ +I PI++G DVL ++Q+G+GKT ++I +Q++ A+++ PT
Sbjct: 45 SAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQ------ALMLAPT 98
Query: 476 RELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHT 535
RELALQ ++ L I GG + +R I+V TPGR+ D+ +
Sbjct: 99 RELALQIQKVVMALAF-HMDIKVHACIGGTSFVEDAEGLRDA-QIVVGTPGRVFDNIQ-R 155
Query: 536 ETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAG 595
+ K++ +LDEAD +L G++ I + I P Q +LLSAT+ V +
Sbjct: 156 RRFRTDKIKMFILDEADEMLSSGFKEQIYQ---IFTLLPPTTQVVLLSATMPNDVLEVTT 212
Query: 596 MTLQNPIQIDAADSTDIHNTTDSLVIPDSL-----KQHFI-VTPPKLRLVALASFILGKC 649
++NP++I LV D L KQ ++ V + + L
Sbjct: 213 KFMRNPVRI--------------LVKKDELTLEGIKQFYVNVEEEEYKYECL-------T 251
Query: 650 QNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSV 709
+ ++ ++F T+ + T L + ++ + Q ER + K FRS
Sbjct: 252 DLYDSISVTQAVIFCNTRRKVEELTTKLR---NDKFTVSAIYSDLPQQERDTIMKEFRSG 308
Query: 710 KSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPSEV 769
S +LI TD+ ARG+D+ V ++ Y P++ +Y+HR+GR R G +G ++ F+ +V
Sbjct: 309 SSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDV 368
Query: 770 KLVEELQNR-RIRIEEI 785
+ EL+ +IEE+
Sbjct: 369 GAMRELEKFYSTQIEEL 385
|
| >1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A* Length = 394 | Back alignment and structure |
|---|
Score = 145 bits (368), Expect = 8e-38
Identities = 54/174 (31%), Positives = 89/174 (51%), Gaps = 12/174 (6%)
Query: 7 TTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPT 66
+ +QQ +I PI++G DVL ++Q+G+GKT ++I +Q++ A+++ PT
Sbjct: 45 SAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQ------ALMLAPT 98
Query: 67 RELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHT 126
RELALQ ++ L I GG + +R I+V TPGR+ D+ +
Sbjct: 99 RELALQIQKVVMALAF-HMDIKVHACIGGTSFVEDAEGLRDA-QIVVGTPGRVFDNIQ-R 155
Query: 127 ETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPA 180
+ K++ +LDEAD +L G++ I +I P Q +LLSAT+
Sbjct: 156 RRFRTDKIKMFILDEADEMLSSGFKEQIY---QIFTLLPPTTQVVLLSATMPND 206
|
| >3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens} Length = 414 | Back alignment and structure |
|---|
Score = 247 bits (633), Expect = 1e-73
Identities = 105/380 (27%), Positives = 187/380 (49%), Gaps = 43/380 (11%)
Query: 416 TTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPT 475
+ +QQ +I P + G DV+ ++Q+G+GKT +AI I+Q+++ A+++ PT
Sbjct: 64 SAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQ------ALVLAPT 117
Query: 476 RELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIR-KGISILVATPGRLLDHCKH 534
RELA Q ++ L + GG +++E +++ + I+V TPGR+ D
Sbjct: 118 RELAQQIQKVVMALGD-YMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLN- 175
Query: 535 TETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLA 594
L ++ VLDEAD +L +G++ I + I +K Q +LLSAT+ V +
Sbjct: 176 RRYLSPKYIKMFVLDEADEMLSRGFKDQIYD---IFQKLNSNTQVVLLSATMPSDVLEVT 232
Query: 595 GMTLQNPIQIDAADSTDIHNTTDSLVIPDSL-----KQHFI-VTPPKLRLVALASFILGK 648
+++PI+I LV + L +Q +I V + +L L
Sbjct: 233 KKFMRDPIRI--------------LVKKEELTLEGIRQFYINVEREEWKLDTL------- 271
Query: 649 CQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRS 708
C ++ ++F+ T+ D+ TE + + +HG M Q ER + + FRS
Sbjct: 272 CDLYETLTITQAVIFINTRRKVDWLTEKMH---ARDFTVSAMHGDMDQKERDVIMREFRS 328
Query: 709 VKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPSE 768
S VLI TD+ ARG+D+ V ++ Y P++ +Y+HR+GR R G +G ++ + +
Sbjct: 329 GSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEED 388
Query: 769 VKLVEELQNR-RIRIEEIKL 787
+ + +++ IEE+ L
Sbjct: 389 KRTLRDIETFYNTSIEEMPL 408
|
| >3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens} Length = 414 | Back alignment and structure |
|---|
Score = 146 bits (370), Expect = 7e-38
Identities = 53/175 (30%), Positives = 92/175 (52%), Gaps = 12/175 (6%)
Query: 7 TTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPT 66
+ +QQ +I P + G DV+ ++Q+G+GKT +AI I+Q+++ A+++ PT
Sbjct: 64 SAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQ------ALVLAPT 117
Query: 67 RELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIR-KGISILVATPGRLLDHCKH 125
RELA Q ++ L + GG +++E +++ + I+V TPGR+ D
Sbjct: 118 RELAQQIQKVVMALGD-YMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLN- 175
Query: 126 TETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPA 180
L ++ VLDEAD +L +G++ I +I +K Q +LLSAT+
Sbjct: 176 RRYLSPKYIKMFVLDEADEMLSRGFKDQIY---DIFQKLNSNTQVVLLSATMPSD 227
|
| >3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B Length = 412 | Back alignment and structure |
|---|
Score = 227 bits (580), Expect = 3e-66
Identities = 95/419 (22%), Positives = 192/419 (45%), Gaps = 45/419 (10%)
Query: 383 SEALFAPTSYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGG--DVLVRSQTGS 440
+ L++ S+EE + P + + + M + + +Q+ ++ +L +++ +SQ+G+
Sbjct: 18 NSPLYSVKSFEEL-RLKPQLLQGVYA-MGFNRPSKIQENALPLMLAEPPQNLIAQSQSGT 75
Query: 441 GKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSW 500
GKT A+ + ++ +++ + + PT ELALQT ++ ++ K + + ++
Sbjct: 76 GKTAAFVLAMLSQVEPANKYPQ------CLCLSPTYELALQTGKVIEQMGKFYPELKLAY 129
Query: 501 LTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILD-QGY 559
G K++ + I++ TPG +LD C + + K++ VLDEAD ++ QG+
Sbjct: 130 AVRGNKLER---GQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGH 186
Query: 560 ERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSL 619
+ + I + Q +L SAT +V + A + +P I + ++L
Sbjct: 187 QDQS---IRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIK------LKREEETL 237
Query: 620 VIPDSLKQHFI-VTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLS 678
D++KQ+++ + + AL + + + ++F T+ A + LS
Sbjct: 238 ---DTIKQYYVLCSSRDEKFQALCNLY--GAITIA-----QAMIFCHTRKTASWLAAELS 287
Query: 679 TVLGENIAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQY--- 735
E L G M +R V + FR K VL+ T+V ARG+D+ V ++ +
Sbjct: 288 ---KEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLP 344
Query: 736 TAPSSSTD---YVHRVGRTARVGHEGSSLLFLIPSE-VKLVEELQNR-RIRIEEIKLKD 789
+ D Y+HR+GRT R G G ++ + + ++ +Q +IE + D
Sbjct: 345 VDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFNKKIERLDTDD 403
|
| >3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B Length = 412 | Back alignment and structure |
|---|
Score = 136 bits (345), Expect = 1e-34
Identities = 42/177 (23%), Positives = 89/177 (50%), Gaps = 15/177 (8%)
Query: 7 TTVQQLSIQPILDGG--DVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIIL 64
+ +Q+ ++ +L +++ +SQ+G+GKT A+ + ++ +++ + +
Sbjct: 49 SKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQ------CLCLS 102
Query: 65 PTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCK 124
PT ELALQT ++ ++ K + + ++ G K++ + I++ TPG +LD C
Sbjct: 103 PTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLER---GQKISEQIVIGTPGTVLDWCS 159
Query: 125 HTETLKFSKVEHLVLDEADRILD-QGYERDIAEFLEILKKQKPQFQSILLSATLTPA 180
+ + K++ VLDEAD ++ QG++ + I + Q +L SAT +
Sbjct: 160 KLKFIDPKKIKVFVLDEADVMIATQGHQDQS---IRIQRMLPRNCQMLLFSATFEDS 213
|
| >3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens} Length = 479 | Back alignment and structure |
|---|
Score = 227 bits (581), Expect = 1e-65
Identities = 103/500 (20%), Positives = 213/500 (42%), Gaps = 49/500 (9%)
Query: 302 QNVNEDEESKMLVFMATQDMADYHTELLSTKKKIKKLKEYNIDPDNYEIPKKTEVKSGPI 361
V+E E + + + K E + + + ++ +
Sbjct: 8 LAVDEQEAAAESLSNLHLKEEKIKPDTNGAVVKTNANAEKTDEEEKEDRAAQSLLNKLIR 67
Query: 362 SSLFQNNPDIPNVPTRRLKPVSEALFAPTSYEEFPGIHPFMKKNLNEGMNITQVTTVQQL 421
S+L N + + + + L++ S+EE + P + + + M + + +Q+
Sbjct: 68 SNLVDNTNQVEVLQ----RDPNSPLYSVKSFEEL-RLKPQLLQGVYA-MGFNRPSKIQEN 121
Query: 422 SIQPILDGG--DVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELA 479
++ +L +++ +SQ+G+GKT A+ + ++ +++ + + PT ELA
Sbjct: 122 ALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQ------CLCLSPTYELA 175
Query: 480 LQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLK 539
LQT ++ ++ K + + ++ G K++ + I++ TPG +LD C + +
Sbjct: 176 LQTGKVIEQMGKFYPELKLAYAVRGNKLER---GQKISEQIVIGTPGTVLDWCSKLKFID 232
Query: 540 FSKVEHLVLDEADRILD-QGYERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTL 598
K++ VLDEAD ++ QG++ + I + Q +L SAT +V + A +
Sbjct: 233 PKKIKVFVLDEADVMIATQGHQDQS---IRIQRMLPRNCQMLLFSATFEDSVWKFAQKVV 289
Query: 599 QNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLR-LVALASFILGKCQNVNEDEE 657
+P I + ++L D++KQ++++ + AL + +
Sbjct: 290 PDPNVIK------LKREEETL---DTIKQYYVLCSSRDEKFQALCNLY--GAITIA---- 334
Query: 658 SKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSVKSGVLICT 717
+ ++F T+ A + LS E L G M +R V + FR K VL+ T
Sbjct: 335 -QAMIFCHTRKTASWLAAELS---KEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTT 390
Query: 718 DVAARGLDLPLVDWIVQYTAPSSSTD------YVHRVGRTARVGHEGSSLLFLIPSE-VK 770
+V ARG+D+ V ++ + P Y+HR+GRT R G G ++ + +
Sbjct: 391 NVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMN 450
Query: 771 LVEELQNR-RIRIEEIKLKD 789
++ +Q +IE + D
Sbjct: 451 ILNRIQEHFNKKIERLDTDD 470
|
| >3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens} Length = 479 | Back alignment and structure |
|---|
Score = 135 bits (343), Expect = 6e-34
Identities = 42/177 (23%), Positives = 89/177 (50%), Gaps = 15/177 (8%)
Query: 7 TTVQQLSIQPILDGG--DVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIIL 64
+ +Q+ ++ +L +++ +SQ+G+GKT A+ + ++ +++ + +
Sbjct: 116 SKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQ------CLCLS 169
Query: 65 PTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCK 124
PT ELALQT ++ ++ K + + ++ G K++ + I++ TPG +LD C
Sbjct: 170 PTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLER---GQKISEQIVIGTPGTVLDWCS 226
Query: 125 HTETLKFSKVEHLVLDEADRILD-QGYERDIAEFLEILKKQKPQFQSILLSATLTPA 180
+ + K++ VLDEAD ++ QG++ + I + Q +L SAT +
Sbjct: 227 KLKFIDPKKIKVFVLDEADVMIATQGHQDQS---IRIQRMLPRNCQMLLFSATFEDS 280
|
| >3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens} Length = 262 | Back alignment and structure |
|---|
Score = 217 bits (556), Expect = 7e-65
Identities = 81/255 (31%), Positives = 142/255 (55%), Gaps = 9/255 (3%)
Query: 352 KKTEVKSGPISSLFQNNPDIPNVPTRRLKPVSEALFAPTSYEEFPG-IHPFMKKNLNEGM 410
+ ++++ + + D L F TS+ ++ K + E M
Sbjct: 14 GTENLYFQSMNNVEKPDNDEDESEVPSLPLGLTGAFEDTSFASLCNLVNENTLKAIKE-M 72
Query: 411 NITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAV 470
T +T +Q SI+P+L+G D+L ++TGSGKTLA+ IP ++ + ++R ++G +
Sbjct: 73 GFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRFM--PRNGTGVL 130
Query: 471 IILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLD 530
I+ PTRELA+QT + +L + GG +E ++ GI+I+VATPGRLLD
Sbjct: 131 ILSPTRELAMQTFGVLKELMT-HHVHTYGLIMGGSNRSAEAQKLGNGINIIVATPGRLLD 189
Query: 531 HCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPAV 590
H ++T + ++ LV+DEADRILD G+E ++ + +++L ++ Q++L SAT T V
Sbjct: 190 HMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLPTRR---QTMLFSATQTRKV 246
Query: 591 QRLAGMTLQN-PIQI 604
+ LA ++L+ P+ +
Sbjct: 247 EDLARISLKKEPLYV 261
|
| >3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens} Length = 262 | Back alignment and structure |
|---|
Score = 199 bits (508), Expect = 4e-58
Identities = 69/179 (38%), Positives = 113/179 (63%), Gaps = 6/179 (3%)
Query: 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYA 60
M T +T +Q SI+P+L+G D+L ++TGSGKTLA+ IP ++ + ++R ++G
Sbjct: 72 MGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRFM--PRNGTGV 129
Query: 61 VIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLL 120
+I+ PTRELA+QT + +L + GG +E ++ GI+I+VATPGRLL
Sbjct: 130 LILSPTRELAMQTFGVLKELMT-HHVHTYGLIMGGSNRSAEAQKLGNGINIIVATPGRLL 188
Query: 121 DHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTP 179
DH ++T + ++ LV+DEADRILD G+E ++ + +++L ++ Q++L SAT T
Sbjct: 189 DHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLPTRR---QTMLFSATQTR 244
|
| >3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens} Length = 262 | Back alignment and structure |
|---|
Score = 71.6 bits (176), Expect = 9e-14
Identities = 25/73 (34%), Positives = 48/73 (65%), Gaps = 4/73 (5%)
Query: 185 KHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLTPAVQR 244
++T + ++ LV+DEADRILD G+E ++ + +++L ++ Q++L SAT T V+
Sbjct: 192 QNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLPTRR---QTMLFSATQTRKVED 248
Query: 245 LAGMTLQN-PIQI 256
LA ++L+ P+ +
Sbjct: 249 LARISLKKEPLYV 261
|
| >3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A* Length = 395 | Back alignment and structure |
|---|
Score = 217 bits (554), Expect = 6e-63
Identities = 101/413 (24%), Positives = 189/413 (45%), Gaps = 49/413 (11%)
Query: 390 TSYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGG--DVLVRSQTGSGKTLAYA 447
S++E G+ P + K + M + + +Q+ ++ +L +++ +SQ+G+GKT A++
Sbjct: 5 KSFDEL-GLAPELLKGIYA-MKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFS 62
Query: 448 IPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKM 507
+ ++ ++ A+ + P+RELA QTLE+ ++ K FT I +
Sbjct: 63 LTMLTRVNPEDASPQ------AICLAPSRELARQTLEVVQEMGK-FTKITSQLIVPDSFE 115
Query: 508 KSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILD-QGYERDIAEF 566
K+++ ++V TPG +LD + + ++ K++ VLDEAD +LD QG
Sbjct: 116 KNKQ----INAQVIVGTPGTVLDLMRR-KLMQLQKIKIFVLDEADNMLDQQGLGDQC--- 167
Query: 567 LEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLK 626
+ + + Q +L SAT AV++ A + N ++ + ++ D++K
Sbjct: 168 IRVKRFLPKDTQLVLFSATFADAVRQYAKKIVPNANTLE------LQTNEVNV---DAIK 218
Query: 627 QHFI-VTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENI 685
Q ++ + L + ++F+AT+ A+ L E
Sbjct: 219 QLYMDCKNEADKFDVL-------TELYGLMTIGSSIIFVATKKTANVLYGKLK---SEGH 268
Query: 686 AFFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTD-- 743
LHG + ER + FR +S VLI T+V ARG+D+P V +V Y P+ +
Sbjct: 269 EVSILHGDLQTQERDRLIDDFREGRSKVLITTNVLARGIDIPTVSMVVNYDLPTLANGQA 328
Query: 744 ----YVHRVGRTARVGHEGSSLLFLIPSE-VKLVEELQN--RRIRIEEIKLKD 789
Y+HR+GRT R G +G ++ F+ ++ +Q I + + D
Sbjct: 329 DPATYIHRIGRTGRFGRKGVAISFVHDKNSFNILSAIQKYFGDIEMTRVPTDD 381
|
| >3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A* Length = 395 | Back alignment and structure |
|---|
Score = 128 bits (323), Expect = 6e-32
Identities = 48/183 (26%), Positives = 92/183 (50%), Gaps = 18/183 (9%)
Query: 1 MNITQVTTVQQLSIQPILDGG--DVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGI 58
M + + +Q+ ++ +L +++ +SQ+G+GKT A+++ ++ ++
Sbjct: 23 MKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNPEDASPQ----- 77
Query: 59 YAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGR 118
A+ + P+RELA QTLE+ ++ K FT I + K+++ ++V TPG
Sbjct: 78 -AICLAPSRELARQTLEVVQEMGK-FTKITSQLIVPDSFEKNKQ----INAQVIVGTPGT 131
Query: 119 LLDHCKHTETLKFSKVEHLVLDEADRILD-QGYERDIAEFLEILKKQKPQFQSILLSATL 177
+LD + + ++ K++ VLDEAD +LD QG + + + Q +L SAT
Sbjct: 132 VLDLMRR-KLMQLQKIKIFVLDEADNMLDQQGLGDQC---IRVKRFLPKDTQLVLFSATF 187
Query: 178 TPA 180
A
Sbjct: 188 ADA 190
|
| >3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A* Length = 395 | Back alignment and structure |
|---|
Score = 60.3 bits (147), Expect = 1e-09
Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 4/69 (5%)
Query: 189 TLKFSKVEHLVLDEADRILD-QGYERDIAEFLEILKKQKPQFQSVLLSATLTPAVQRLAG 247
++ K++ VLDEAD +LD QG + + + Q VL SAT AV++ A
Sbjct: 140 LMQLQKIKIFVLDEADNMLDQQGLGDQC---IRVKRFLPKDTQLVLFSATFADAVRQYAK 196
Query: 248 MTLQNPIQI 256
+ N +
Sbjct: 197 KIVPNANTL 205
|
| >2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens} Length = 236 | Back alignment and structure |
|---|
Score = 209 bits (535), Expect = 3e-62
Identities = 86/217 (39%), Positives = 126/217 (58%), Gaps = 9/217 (4%)
Query: 388 APTSYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYA 447
T + +FP + K L E VT +Q+ +I L G DVL ++TGSGKTLA+
Sbjct: 23 EITRFSDFP-LSKKTLKGLQE-AQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFL 80
Query: 448 IPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKM 507
+P+++ L R + + DG+ +II PTRELA QT E+ K+ K + GG+ +
Sbjct: 81 VPVLEAL--YRLQWTSTDGLGVLIISPTRELAYQTFEVLRKVGK-NHDFSAGLIIGGKDL 137
Query: 508 KSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFL 567
K E RI I+ILV TPGRLL H T + + ++ LVLDEADRILD G+ + +
Sbjct: 138 KHEAERI-NNINILVCTPGRLLQHMDETVSFHATDLQMLVLDEADRILDMGFADTMNAVI 196
Query: 568 EILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQI 604
E L K++ Q++L SAT T +V+ LA ++L+NP +
Sbjct: 197 ENLPKKR---QTLLFSATQTKSVKDLARLSLKNPEYV 230
|
| >2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens} Length = 236 | Back alignment and structure |
|---|
Score = 190 bits (485), Expect = 2e-55
Identities = 74/179 (41%), Positives = 105/179 (58%), Gaps = 7/179 (3%)
Query: 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYA 60
VT +Q+ +I L G DVL ++TGSGKTLA+ +P+++ L R + + DG+
Sbjct: 43 AQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEAL--YRLQWTSTDGLGV 100
Query: 61 VIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLL 120
+II PTRELA QT E+ K+ K + GG+ +K E RI I+ILV TPGRLL
Sbjct: 101 LIISPTRELAYQTFEVLRKVGK-NHDFSAGLIIGGKDLKHEAERI-NNINILVCTPGRLL 158
Query: 121 DHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTP 179
H T + + ++ LVLDEADRILD G+ + +E L K++ Q++L SAT T
Sbjct: 159 QHMDETVSFHATDLQMLVLDEADRILDMGFADTMNAVIENLPKKR---QTLLFSATQTK 214
|
| >2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens} Length = 236 | Back alignment and structure |
|---|
Score = 75.7 bits (187), Expect = 2e-15
Identities = 28/72 (38%), Positives = 45/72 (62%), Gaps = 3/72 (4%)
Query: 185 KHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLTPAVQR 244
T + + ++ LVLDEADRILD G+ + +E L K++ Q++L SAT T +V+
Sbjct: 162 DETVSFHATDLQMLVLDEADRILDMGFADTMNAVIENLPKKR---QTLLFSATQTKSVKD 218
Query: 245 LAGMTLQNPIQI 256
LA ++L+NP +
Sbjct: 219 LARLSLKNPEYV 230
|
| >3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A* Length = 414 | Back alignment and structure |
|---|
Score = 213 bits (544), Expect = 2e-61
Identities = 76/414 (18%), Positives = 142/414 (34%), Gaps = 58/414 (14%)
Query: 416 TTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPT 475
T Q+L + I+ G + + TG GKT + + + G + ++ PT
Sbjct: 23 TGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLA---------RKGKKSALVFPT 73
Query: 476 RELALQTLEIFTKLCKSFTWIVP--SWLTGGEKMKSEKARIRKGISILVATPGRLLDHCK 533
L QTLE KL I S + EK K EK+ ILV + +
Sbjct: 74 VTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSK--- 130
Query: 534 HTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPAVQRL 593
+ E L + + + +D+ D +L D L ++ + S +
Sbjct: 131 NREKLSQKRFDFVFVDDVDAVLKASRNIDT---LLMMVGIPEEIIRKAFSTIKQGKIYER 187
Query: 594 AGMTLQNPIQIDAADSTDIHNTTDSLVIPDSL------------KQHFIVTPPKLRLVAL 641
+ + +A + + I + K +LV L
Sbjct: 188 PKNLKPGILVVSSATAKPRGIRPLLFRDLLNFTVGRLVSVARNITHVRISSRSKEKLVEL 247
Query: 642 ASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTE 701
+L+F T++ E L + + SE +
Sbjct: 248 LEIF-----------RDGILIFAQTEEEGKELYEYLK---RFKF-----NVGETWSEFEK 288
Query: 702 VFKTFRSVKSGVLICTDV----AARGLDLP-LVDWIVQYTAPSS--STDYVHRVGRTARV 754
F+ F+ K +LI RG+DLP + +++ + PS Y+ GR++R+
Sbjct: 289 NFEDFKVGKINILIGVQAYYGKLTRGVDLPERIKYVIFWGTPSGPDVYTYIQASGRSSRI 348
Query: 755 GHEG--SSLLFLIPSEVKLVEELQNR-RIRIEEIKLKDCLQNLLSVKMEGDLSR 805
+ + + + ++ E L+ R + EE +++ N + E + SR
Sbjct: 349 LNGVLVKGVSVIFEEDEEIFESLKTRLLLIAEEEIIEEAEANWKELVHEVEESR 402
|
| >3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A* Length = 414 | Back alignment and structure |
|---|
Score = 145 bits (367), Expect = 1e-37
Identities = 52/328 (15%), Positives = 98/328 (29%), Gaps = 77/328 (23%)
Query: 7 TTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPT 66
T Q+L + I+ G + + TG GKT + + + G + ++ PT
Sbjct: 23 TGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLA---------RKGKKSALVFPT 73
Query: 67 RELALQTLEIFTKLCKSFTWIVP--SWLTGGEKMKSEKARIRKGISILVATPGRLLDHCK 124
L QTLE KL I S + EK K EK+ ILV + +
Sbjct: 74 VTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSK--- 130
Query: 125 HTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPATCWC 184
+ E L + + + +D+ D +L D L ++ + S
Sbjct: 131 NREKLSQKRFDFVFVDDVDAVLKASRNIDT---LLMMVGIPEEIIRKAFSTIKQG----- 182
Query: 185 KHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLTPAVQR 244
+I ++ K +L+ ++ T +
Sbjct: 183 -----------------------------------KIYERPKNLKPGILVVSSATAKPRG 207
Query: 245 LAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALASFILGKCQNV 304
+ + ++ + + + I + K +LV L
Sbjct: 208 IRPLLFRDLLNFTVGRL----VSVARNI-----THVRISSRSKEKLVELLEIF------- 251
Query: 305 NEDEESKMLVFMATQDMADYHTELLSTK 332
+L+F T++ E L
Sbjct: 252 ----RDGILIFAQTEEEGKELYEYLKRF 275
|
| >3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens} Length = 249 | Back alignment and structure |
|---|
Score = 193 bits (493), Expect = 2e-56
Identities = 67/220 (30%), Positives = 125/220 (56%), Gaps = 12/220 (5%)
Query: 388 APTSYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYA 447
++++ G+ + + ++ + T+ T +Q +I L G D++ ++TGSGKT A+A
Sbjct: 41 ETKTFKDL-GVTDVLCEACDQ-LGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFA 98
Query: 448 IPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKM 507
+PI+ L E ++A+++ PTRELA Q E F L + + + GG
Sbjct: 99 LPILNALLE------TPQRLFALVLTPTRELAFQISEQFEALGS-SIGVQSAVIVGGIDS 151
Query: 508 KSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFL 567
S+ + K I++ATPGRL+DH ++T+ +++LV+DEADRIL+ +E ++ + L
Sbjct: 152 MSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKIL 211
Query: 568 EILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAA 607
+++ + + ++ L SAT+T VQ+L L+NP++ +
Sbjct: 212 KVIPRDR---KTFLFSATMTKKVQKLQRAALKNPVKCAVS 248
|
| >3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens} Length = 249 | Back alignment and structure |
|---|
Score = 174 bits (442), Expect = 2e-49
Identities = 60/179 (33%), Positives = 104/179 (58%), Gaps = 10/179 (5%)
Query: 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYA 60
+ T+ T +Q +I L G D++ ++TGSGKT A+A+PI+ L E ++A
Sbjct: 61 LGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLE------TPQRLFA 114
Query: 61 VIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLL 120
+++ PTRELA Q E F L + + + GG S+ + K I++ATPGRL+
Sbjct: 115 LVLTPTRELAFQISEQFEALGS-SIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLI 173
Query: 121 DHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTP 179
DH ++T+ +++LV+DEADRIL+ +E ++ + L+++ + + ++ L SAT+T
Sbjct: 174 DHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDR---KTFLFSATMTK 229
|
| >1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19 Length = 253 | Back alignment and structure |
|---|
Score = 176 bits (448), Expect = 4e-50
Identities = 70/219 (31%), Positives = 116/219 (52%), Gaps = 8/219 (3%)
Query: 390 TSYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIP 449
+++E + P ++ N+ + + T +Q+ +I IL+ D++ +QTGSGKT A+ IP
Sbjct: 23 ENFDE-LKLDPTIRNNILL-ASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIP 80
Query: 450 IIQKL---QEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEK 506
II L + + S+ +I+ PTRELA+Q L K + T + + GG
Sbjct: 81 IINHLVCQDLNQQRYSKTAYPKCLILAPTRELAIQILSESQKFSLN-TPLRSCVVYGGAD 139
Query: 507 MKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEF 566
S+ ++ G +LVATPGRL+D + + +++VLDEADR+LD G+E I +
Sbjct: 140 THSQIREVQMGCHLLVATPGRLVDFIEKNKI-SLEFCKYIVLDEADRMLDMGFEPQIRKI 198
Query: 567 LE-ILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQI 604
+E Q+++ SAT +Q+LA L N I +
Sbjct: 199 IEESNMPSGINRQTLMFSATFPKEIQKLAADFLYNYIFM 237
|
| >1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19 Length = 253 | Back alignment and structure |
|---|
Score = 156 bits (398), Expect = 3e-43
Identities = 69/253 (27%), Positives = 109/253 (43%), Gaps = 65/253 (25%)
Query: 7 TTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKL---QEMRPKISRKDGIYAVII 63
T +Q+ +I IL+ D++ +QTGSGKT A+ IPII L + + S+ +I+
Sbjct: 47 TPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAYPKCLIL 106
Query: 64 LPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHC 123
PTRELA+Q L K + T + + GG S+ ++ G +LVATPGRL+D
Sbjct: 107 APTRELAIQILSESQKFSLN-TPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFI 165
Query: 124 KHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPATCW 183
+ + +++VLDEADR+LD G+E PQ + I+ + +
Sbjct: 166 EKNKI-SLEFCKYIVLDEADRMLDMGFE--------------PQIRKIIEESNMPSG--- 207
Query: 184 CKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLTPAVQ 243
+R Q+++ SAT +Q
Sbjct: 208 -------------------INR------------------------QTLMFSATFPKEIQ 224
Query: 244 RLAGMTLQNPIQI 256
+LA L N I +
Sbjct: 225 KLAADFLYNYIFM 237
|
| >3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens} Length = 245 | Back alignment and structure |
|---|
Score = 175 bits (446), Expect = 7e-50
Identities = 58/213 (27%), Positives = 98/213 (46%), Gaps = 14/213 (6%)
Query: 397 GIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQE 456
I+ + +N+ + T +Q +I +L G ++L + TGSGKTLA++IPI+ +L++
Sbjct: 35 KINSRLLQNILD-AGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQLKQ 93
Query: 457 MRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGG-EKMKSEKARIR 515
G A+II PTRELA Q K+ + T + K +
Sbjct: 94 -----PANKGFRALIISPTRELASQIHRELIKISEG-TGFRIHMIHKAAVAAKKFGPKSS 147
Query: 516 KGISILVATPGRLLDH-CKHTETLKFSKVEHLVLDEADRILDQ---GYERDIAEFLEILK 571
K ILV TP RL+ + + + VE LV+DE+D++ + G+ +A
Sbjct: 148 KKFDILVTTPNRLIYLLKQDPPGIDLASVEWLVVDESDKLFEDGKTGFRDQLASIFLACT 207
Query: 572 KQKPQFQSILLSATLTPAVQRLAGMTLQNPIQI 604
+ + + SAT V++ + L N I +
Sbjct: 208 --SHKVRRAMFSATFAYDVEQWCKLNLDNVISV 238
|
| >3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens} Length = 245 | Back alignment and structure |
|---|
Score = 155 bits (395), Expect = 5e-43
Identities = 52/178 (29%), Positives = 83/178 (46%), Gaps = 13/178 (7%)
Query: 7 TTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPT 66
T +Q +I +L G ++L + TGSGKTLA++IPI+ +L++ G A+II PT
Sbjct: 53 TPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQLKQ-----PANKGFRALIISPT 107
Query: 67 RELALQTLEIFTKLCKSFTWIVPSWLTGG-EKMKSEKARIRKGISILVATPGRLLDH-CK 124
RELA Q K+ + T + K + K ILV TP RL+ +
Sbjct: 108 RELASQIHRELIKISEG-TGFRIHMIHKAAVAAKKFGPKSSKKFDILVTTPNRLIYLLKQ 166
Query: 125 HTETLKFSKVEHLVLDEADRILDQ---GYERDIAEFLEILKKQKPQFQSILLSATLTP 179
+ + VE LV+DE+D++ + G+ +A + + + SAT
Sbjct: 167 DPPGIDLASVEWLVVDESDKLFEDGKTGFRDQLASIFLACT--SHKVRRAMFSATFAY 222
|
| >2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A Length = 207 | Back alignment and structure |
|---|
Score = 171 bits (435), Expect = 8e-49
Identities = 69/211 (32%), Positives = 113/211 (53%), Gaps = 11/211 (5%)
Query: 397 GIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQE 456
+ P + + L+ +T T +Q ++ L+G D++ +++TG+GKTLA+A+PI ++L
Sbjct: 7 PLKPEILEALHG-RGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAERLA- 64
Query: 457 MRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRK 516
P R A+++ PTRELALQ T + + + GG +K + +
Sbjct: 65 --PSQERGRKPRALVLTPTRELALQVASELTAVAPHLKVVA---VYGGTGYGKQKEALLR 119
Query: 517 GISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQ 576
G +VATPGR LD+ + L S+VE VLDEAD +L G+E ++ L +
Sbjct: 120 GADAVVATPGRALDYLRQ-GVLDLSRVEVAVLDEADEMLSMGFEEEVEALLSATPPSR-- 176
Query: 577 FQSILLSATLTPAVQRLAGMTLQNPIQIDAA 607
Q++L SATL +RLA ++NP+ I+
Sbjct: 177 -QTLLFSATLPSWAKRLAERYMKNPVLINVI 206
|
| >2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A Length = 207 | Back alignment and structure |
|---|
Score = 155 bits (394), Expect = 3e-43
Identities = 60/174 (34%), Positives = 94/174 (54%), Gaps = 10/174 (5%)
Query: 7 TTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPT 66
T +Q ++ L+G D++ +++TG+GKTLA+A+PI ++L P R A+++ PT
Sbjct: 25 TPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAERLA---PSQERGRKPRALVLTPT 81
Query: 67 RELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHT 126
RELALQ T + + + GG +K + +G +VATPGR LD+ +
Sbjct: 82 RELALQVASELTAVAPHLKVVA---VYGGTGYGKQKEALLRGADAVVATPGRALDYLRQ- 137
Query: 127 ETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPA 180
L S+VE VLDEAD +L G+E ++ L + Q++L SATL
Sbjct: 138 GVLDLSRVEVAVLDEADEMLSMGFEEEVEALLSATPPSR---QTLLFSATLPSW 188
|
| >2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A Length = 207 | Back alignment and structure |
|---|
Score = 68.7 bits (169), Expect = 3e-13
Identities = 26/71 (36%), Positives = 39/71 (54%), Gaps = 3/71 (4%)
Query: 189 TLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLTPAVQRLAGM 248
L S+VE VLDEAD +L G+E ++ L + Q++L SATL +RLA
Sbjct: 139 VLDLSRVEVAVLDEADEMLSMGFEEEVEALLSATPPSR---QTLLFSATLPSWAKRLAER 195
Query: 249 TLQNPIQIDAA 259
++NP+ I+
Sbjct: 196 YMKNPVLINVI 206
|
| >3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens} Length = 228 | Back alignment and structure |
|---|
Score = 169 bits (430), Expect = 7e-48
Identities = 67/232 (28%), Positives = 117/232 (50%), Gaps = 18/232 (7%)
Query: 373 NVPTRRLKPVSEALFAPTSYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDV 432
+P KP +++ +P + K++ + I + T +Q + IL G D+
Sbjct: 13 LIP----KPT-------CRFKDAFQQYPDLLKSIIR-VGILKPTPIQSQAWPIILQGIDL 60
Query: 433 LVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKS 492
+V +QTG+GKTL+Y +P L +++G +++ PTRELAL +K
Sbjct: 61 IVVAQTGTGKTLSYLMPGFIHLDSQPISREQRNGPGMLVLTPTRELALHVEAECSKYSYK 120
Query: 493 FTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEAD 552
+ + GG + I KG+ I++ATPGRL D ++ + +LV+DEAD
Sbjct: 121 G--LKSICIYGGRNRNGQIEDISKGVDIIIATPGRLNDLQM-NNSVNLRSITYLVIDEAD 177
Query: 553 RILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQI 604
++LD +E I +IL +P Q+++ SAT V++LA L++P+ +
Sbjct: 178 KMLDMEFEPQI---RKILLDVRPDRQTVMTSATWPDTVRQLALSYLKDPMIV 226
|
| >3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens} Length = 228 | Back alignment and structure |
|---|
Score = 147 bits (373), Expect = 3e-40
Identities = 56/170 (32%), Positives = 90/170 (52%), Gaps = 6/170 (3%)
Query: 7 TTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPT 66
T +Q + IL G D++V +QTG+GKTL+Y +P L +++G +++ PT
Sbjct: 44 TPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISREQRNGPGMLVLTPT 103
Query: 67 RELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHT 126
RELAL +K + + GG + I KG+ I++ATPGRL D
Sbjct: 104 RELALHVEAECSKYSYKG--LKSICIYGGRNRNGQIEDISKGVDIIIATPGRLNDLQM-N 160
Query: 127 ETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSAT 176
++ + +LV+DEAD++LD +E I +IL +P Q+++ SAT
Sbjct: 161 NSVNLRSITYLVIDEADKMLDMEFEPQI---RKILLDVRPDRQTVMTSAT 207
|
| >3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens} Length = 228 | Back alignment and structure |
|---|
Score = 66.8 bits (164), Expect = 2e-12
Identities = 23/68 (33%), Positives = 41/68 (60%), Gaps = 3/68 (4%)
Query: 189 TLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLTPAVQRLAGM 248
++ + +LV+DEAD++LD +E I +IL +P Q+V+ SAT V++LA
Sbjct: 162 SVNLRSITYLVIDEADKMLDMEFEPQI---RKILLDVRPDRQTVMTSATWPDTVRQLALS 218
Query: 249 TLQNPIQI 256
L++P+ +
Sbjct: 219 YLKDPMIV 226
|
| >1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19 Length = 219 | Back alignment and structure |
|---|
Score = 168 bits (427), Expect = 1e-47
Identities = 62/222 (27%), Positives = 104/222 (46%), Gaps = 19/222 (8%)
Query: 388 APTSYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYA 447
A T + F PF+ + + + + T +Q+ I L G ++ +SQTG+GKT AY
Sbjct: 2 AETQFTRF-PFQPFIIEAIKT-LRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYL 59
Query: 448 IPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTW-----IVPSWLT 502
+PI++K++ R ++ AVI PTRELA Q K+ K L
Sbjct: 60 LPIMEKIKPERAEVQ------AVITAPTRELATQIYHETLKITKFCPKDRMIVARC--LI 111
Query: 503 GGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERD 562
GG + ++ I++ TPGR+ D + + L LV+DEAD +LD G+ D
Sbjct: 112 GGTDKQKALEKLNVQPHIVIGTPGRINDFIRE-QALDVHTAHILVVDEADLMLDMGFITD 170
Query: 563 IAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQI 604
+ +I + Q ++ SAT+ ++ ++NP +
Sbjct: 171 VD---QIAARMPKDLQMLVFSATIPEKLKPFLKKYMENPTFV 209
|
| >1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19 Length = 219 | Back alignment and structure |
|---|
Score = 149 bits (378), Expect = 5e-41
Identities = 55/185 (29%), Positives = 88/185 (47%), Gaps = 17/185 (9%)
Query: 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYA 60
+ + T +Q+ I L G ++ +SQTG+GKT AY +PI++K++ R ++ A
Sbjct: 22 LRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKIKPERAEVQ------A 75
Query: 61 VIILPTRELALQTLEIFTKLCKSFTW-----IVPSWLTGGEKMKSEKARIRKGISILVAT 115
VI PTRELA Q K+ K L GG + ++ I++ T
Sbjct: 76 VITAPTRELATQIYHETLKITKFCPKDRMIVARC--LIGGTDKQKALEKLNVQPHIVIGT 133
Query: 116 PGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSA 175
PGR+ D + + L LV+DEAD +LD G+ D+ +I + Q ++ SA
Sbjct: 134 PGRINDFIRE-QALDVHTAHILVVDEADLMLDMGFITDVD---QIAARMPKDLQMLVFSA 189
Query: 176 TLTPA 180
T+
Sbjct: 190 TIPEK 194
|
| >1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19 Length = 219 | Back alignment and structure |
|---|
Score = 61.4 bits (150), Expect = 1e-10
Identities = 18/68 (26%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
Query: 189 TLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLTPAVQRLAGM 248
L LV+DEAD +LD G+ D+ +I + Q ++ SAT+ ++
Sbjct: 145 ALDVHTAHILVVDEADLMLDMGFITDVD---QIAARMPKDLQMLVFSATIPEKLKPFLKK 201
Query: 249 TLQNPIQI 256
++NP +
Sbjct: 202 YMENPTFV 209
|
| >1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19 Length = 206 | Back alignment and structure |
|---|
Score = 165 bits (419), Expect = 1e-46
Identities = 66/216 (30%), Positives = 117/216 (54%), Gaps = 12/216 (5%)
Query: 390 TSYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIP 449
+E++ + + + E M + + +Q+ SI L G D+L R++ G+GK+ AY IP
Sbjct: 3 NEFEDY-CLKRELLMGIFE-MGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIP 60
Query: 450 IIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKS 509
++++L + I A++I+PTRELALQ +I ++ K TGG ++
Sbjct: 61 LLERLDLKKDNIQ------AMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRD 114
Query: 510 EKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEI 569
+ R+ + +++ATPGR+LD K K V+ +VLDEAD++L Q + + + + +
Sbjct: 115 DIMRLDDTVHVVIATPGRILDLIKK-GVAKVDHVQMIVLDEADKLLSQDFVQIMEDIILT 173
Query: 570 LKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQID 605
L K + Q +L SAT +VQ+ L+ P +I+
Sbjct: 174 LPKNR---QILLYSATFPLSVQKFMNSHLEKPYEIN 206
|
| >1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19 Length = 206 | Back alignment and structure |
|---|
Score = 151 bits (383), Expect = 8e-42
Identities = 58/174 (33%), Positives = 98/174 (56%), Gaps = 10/174 (5%)
Query: 7 TTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPT 66
+ +Q+ SI L G D+L R++ G+GK+ AY IP++++L + I A++I+PT
Sbjct: 27 SPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQ------AMVIVPT 80
Query: 67 RELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHT 126
RELALQ +I ++ K TGG ++ + R+ + +++ATPGR+LD K
Sbjct: 81 RELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKK- 139
Query: 127 ETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPA 180
K V+ +VLDEAD++L Q + + + + + L K + Q +L SAT +
Sbjct: 140 GVAKVDHVQMIVLDEADKLLSQDFVQIMEDIILTLPKNR---QILLYSATFPLS 190
|
| >1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19 Length = 206 | Back alignment and structure |
|---|
Score = 63.7 bits (156), Expect = 1e-11
Identities = 22/69 (31%), Positives = 38/69 (55%), Gaps = 3/69 (4%)
Query: 189 TLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLTPAVQRLAGM 248
K V+ +VLDEAD++L Q + + + + + L K + Q +L SAT +VQ+
Sbjct: 141 VAKVDHVQMIVLDEADKLLSQDFVQIMEDIILTLPKNR---QILLYSATFPLSVQKFMNS 197
Query: 249 TLQNPIQID 257
L+ P +I+
Sbjct: 198 HLEKPYEIN 206
|
| >3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} Length = 242 | Back alignment and structure |
|---|
Score = 160 bits (407), Expect = 1e-44
Identities = 73/232 (31%), Positives = 121/232 (52%), Gaps = 19/232 (8%)
Query: 373 NVPTRRLKPVSEALFAPTSYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDV 432
N P KPV ++ E + + N T+ T +Q L G D+
Sbjct: 23 NCP----KPV-------LNFYEA-NFPANVMDVIAR-QNFTEPTAIQAQGWPVALSGLDM 69
Query: 433 LVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKS 492
+ +QTGSGKTL+Y +P I + +P + R DG +++ PTRELA Q ++ + C++
Sbjct: 70 VGVAQTGSGKTLSYLLPAIVHINH-QPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRA 128
Query: 493 FTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEAD 552
+ + + GG + + +G+ I +ATPGRL+D + +T + +LVLDEAD
Sbjct: 129 -CRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECGKT-NLRRTTYLVLDEAD 186
Query: 553 RILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQI 604
R+LD G+E I +I+ + +P Q+++ SAT V++LA L++ I I
Sbjct: 187 RMLDMGFEPQI---RKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHI 235
|
| >3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} Length = 242 | Back alignment and structure |
|---|
Score = 141 bits (359), Expect = 4e-38
Identities = 61/176 (34%), Positives = 101/176 (57%), Gaps = 6/176 (3%)
Query: 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYA 60
N T+ T +Q L G D++ +QTGSGKTL+Y +P I + +P + R DG
Sbjct: 47 QNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINH-QPFLERGDGPIC 105
Query: 61 VIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLL 120
+++ PTRELA Q ++ + C++ + + + GG + + +G+ I +ATPGRL+
Sbjct: 106 LVLAPTRELAQQVQQVAAEYCRA-CRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLI 164
Query: 121 DHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSAT 176
D + +T + +LVLDEADR+LD G+E I +I+ + +P Q+++ SAT
Sbjct: 165 DFLECGKT-NLRRTTYLVLDEADRMLDMGFEPQI---RKIVDQIRPDRQTLMWSAT 216
|
| >3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} Length = 242 | Back alignment and structure |
|---|
Score = 62.9 bits (154), Expect = 5e-11
Identities = 25/64 (39%), Positives = 40/64 (62%), Gaps = 3/64 (4%)
Query: 193 SKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLTPAVQRLAGMTLQN 252
+ +LVLDEADR+LD G+E I +I+ + +P Q+++ SAT V++LA L++
Sbjct: 175 RRTTYLVLDEADRMLDMGFEPQI---RKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKD 231
Query: 253 PIQI 256
I I
Sbjct: 232 YIHI 235
|
| >1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19 Length = 220 | Back alignment and structure |
|---|
Score = 156 bits (396), Expect = 2e-43
Identities = 54/217 (24%), Positives = 113/217 (52%), Gaps = 14/217 (6%)
Query: 390 TSYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIP 449
+ + +F + P + + + + + VQ I + G DVL ++++G GKT + +
Sbjct: 14 SGFRDF-LLKPELLRAIVD-CGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLA 71
Query: 450 IIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKS 509
+Q+L+ + ++S +++ TRELA Q + + + K + + GG +K
Sbjct: 72 TLQQLEPVTGQVS------VLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKK 125
Query: 510 EKARIRKGIS-ILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQ-GYERDIAEFL 567
++ ++K I+V TPGR+L + ++L ++H +LDE D++L+Q RD+
Sbjct: 126 DEEVLKKNCPHIVVGTPGRILALAR-NKSLNLKHIKHFILDECDKMLEQLDMRRDVQ--- 181
Query: 568 EILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQI 604
EI + + Q ++ SATL+ ++ + +Q+P++I
Sbjct: 182 EIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEI 218
|
| >1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19 Length = 220 | Back alignment and structure |
|---|
Score = 141 bits (357), Expect = 3e-38
Identities = 49/182 (26%), Positives = 93/182 (51%), Gaps = 12/182 (6%)
Query: 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYA 60
+ VQ I + G DVL ++++G GKT + + +Q+L+ + ++S
Sbjct: 32 CGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVS------V 85
Query: 61 VIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGIS-ILVATPGRL 119
+++ TRELA Q + + + K + + GG +K ++ ++K I+V TPGR+
Sbjct: 86 LVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRI 145
Query: 120 LDHCKHTETLKFSKVEHLVLDEADRILDQ-GYERDIAEFLEILKKQKPQFQSILLSATLT 178
L + ++L ++H +LDE D++L+Q RD+ EI + + Q ++ SATL+
Sbjct: 146 LALAR-NKSLNLKHIKHFILDECDKMLEQLDMRRDVQ---EIFRMTPHEKQVMMFSATLS 201
Query: 179 PA 180
Sbjct: 202 KE 203
|
| >1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19 Length = 220 | Back alignment and structure |
|---|
Score = 62.6 bits (153), Expect = 5e-11
Identities = 20/69 (28%), Positives = 40/69 (57%), Gaps = 4/69 (5%)
Query: 189 TLKFSKVEHLVLDEADRILDQ-GYERDIAEFLEILKKQKPQFQSVLLSATLTPAVQRLAG 247
+L ++H +LDE D++L+Q RD+ EI + + Q ++ SATL+ ++ +
Sbjct: 153 SLNLKHIKHFILDECDKMLEQLDMRRDVQ---EIFRMTPHEKQVMMFSATLSKEIRPVCR 209
Query: 248 MTLQNPIQI 256
+Q+P++I
Sbjct: 210 KFMQDPMEI 218
|
| >2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A* Length = 230 | Back alignment and structure |
|---|
Score = 153 bits (390), Expect = 2e-42
Identities = 48/232 (20%), Positives = 98/232 (42%), Gaps = 12/232 (5%)
Query: 373 NVPTRRLKPVSEALFAPTSYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDV 432
++ + R + L P +E + + + L + + VQ +I G D+
Sbjct: 7 DLSSPRTRTGDVLLAEPADFESL-LLSRPVLEGLRA-AGFERPSPVQLKAIPLGRCGLDL 64
Query: 433 LVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKS 492
+V++++G+GKT ++ + L +I+ PTRE+A+Q + T +
Sbjct: 65 IVQAKSGTGKTCVFSTIALDSLVLENLSTQ------ILILAPTREIAVQIHSVITAIGIK 118
Query: 493 FTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEAD 552
+ GG + +K R+ K I V +PGR+ + + L + +LDEAD
Sbjct: 119 MEGLECHVFIGGTPLSQDKTRL-KKCHIAVGSPGRIKQLIEL-DYLNPGSIRLFILDEAD 176
Query: 553 RILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQI 604
++L++G ++ I Q + +SAT + +++P +
Sbjct: 177 KLLEEGSFQEQIN--WIYSSLPASKQMLAVSATYPEFLANALTKYMRDPTFV 226
|
| >2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A* Length = 230 | Back alignment and structure |
|---|
Score = 141 bits (358), Expect = 3e-38
Identities = 42/174 (24%), Positives = 78/174 (44%), Gaps = 10/174 (5%)
Query: 7 TTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPT 66
+ VQ +I G D++V++++G+GKT ++ + L +I+ PT
Sbjct: 48 SPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDSLVLENLSTQ------ILILAPT 101
Query: 67 RELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHT 126
RE+A+Q + T + + GG + +K R+ K I V +PGR+ +
Sbjct: 102 REIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL-KKCHIAVGSPGRIKQLIEL- 159
Query: 127 ETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPA 180
+ L + +LDEAD++L++G ++ I Q + +SAT
Sbjct: 160 DYLNPGSIRLFILDEADKLLEEGSFQEQIN--WIYSSLPASKQMLAVSATYPEF 211
|
| >2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A* Length = 230 | Back alignment and structure |
|---|
Score = 61.9 bits (151), Expect = 1e-10
Identities = 14/68 (20%), Positives = 29/68 (42%), Gaps = 2/68 (2%)
Query: 189 TLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLTPAVQRLAGM 248
L + +LDEAD++L++G ++ I Q + +SAT +
Sbjct: 161 YLNPGSIRLFILDEADKLLEEGSFQEQIN--WIYSSLPASKQMLAVSATYPEFLANALTK 218
Query: 249 TLQNPIQI 256
+++P +
Sbjct: 219 YMRDPTFV 226
|
| >3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A* Length = 237 | Back alignment and structure |
|---|
Score = 148 bits (376), Expect = 1e-40
Identities = 59/190 (31%), Positives = 102/190 (53%), Gaps = 12/190 (6%)
Query: 416 TTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPT 475
+ +QQ +I P + G DV+ ++Q+G+GKT +AI I+Q+L+ + A+++ PT
Sbjct: 54 SAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIEFKETQ------ALVLAPT 107
Query: 476 RELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIR-KGISILVATPGRLLDHCKH 534
RELA Q ++ L + GG +++E +++ + I+V TPGR+ D
Sbjct: 108 RELAQQIQKVILALGD-YMGATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNR 166
Query: 535 TETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLA 594
L ++ VLDEAD +L +G++ I EI +K Q +LLSAT+ V +
Sbjct: 167 -RYLSPKWIKMFVLDEADEMLSRGFKDQIY---EIFQKLNTSIQVVLLSATMPTDVLEVT 222
Query: 595 GMTLQNPIQI 604
+++PI+I
Sbjct: 223 KKFMRDPIRI 232
|
| >3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A* Length = 237 | Back alignment and structure |
|---|
Score = 137 bits (348), Expect = 8e-37
Identities = 55/175 (31%), Positives = 93/175 (53%), Gaps = 12/175 (6%)
Query: 7 TTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPT 66
+ +QQ +I P + G DV+ ++Q+G+GKT +AI I+Q+L+ + A+++ PT
Sbjct: 54 SAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIEFKETQ------ALVLAPT 107
Query: 67 RELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIR-KGISILVATPGRLLDHCKH 125
RELA Q ++ L + GG +++E +++ + I+V TPGR+ D
Sbjct: 108 RELAQQIQKVILALGD-YMGATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNR 166
Query: 126 TETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPA 180
L ++ VLDEAD +L +G++ I EI +K Q +LLSAT+
Sbjct: 167 -RYLSPKWIKMFVLDEADEMLSRGFKDQIY---EIFQKLNTSIQVVLLSATMPTD 217
|
| >3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A* Length = 237 | Back alignment and structure |
|---|
Score = 61.9 bits (151), Expect = 1e-10
Identities = 24/68 (35%), Positives = 37/68 (54%), Gaps = 3/68 (4%)
Query: 189 TLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLTPAVQRLAGM 248
L ++ VLDEAD +L +G++ I EI +K Q VLLSAT+ V +
Sbjct: 168 YLSPKWIKMFVLDEADEMLSRGFKDQIY---EIFQKLNTSIQVVLLSATMPTDVLEVTKK 224
Query: 249 TLQNPIQI 256
+++PI+I
Sbjct: 225 FMRDPIRI 232
|
| >1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A Length = 224 | Back alignment and structure |
|---|
Score = 148 bits (375), Expect = 1e-40
Identities = 58/189 (30%), Positives = 98/189 (51%), Gaps = 12/189 (6%)
Query: 416 TTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPT 475
+ +QQ +I PI++G DVL ++Q+G+GKT ++I +Q++ A+++ PT
Sbjct: 38 SAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQ------ALMLAPT 91
Query: 476 RELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHT 535
RELALQ ++ L I GG + +R I+V TPGR+ D+ +
Sbjct: 92 RELALQIQKVVMALAF-HMDIKVHACIGGTSFVEDAEGLRDA-QIVVGTPGRVFDNIQR- 148
Query: 536 ETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAG 595
+ K++ +LDEAD +L G++ I +I P Q +LLSAT+ V +
Sbjct: 149 RRFRTDKIKMFILDEADEMLSSGFKEQIY---QIFTLLPPTTQVVLLSATMPNDVLEVTT 205
Query: 596 MTLQNPIQI 604
++NP++I
Sbjct: 206 KFMRNPVRI 214
|
| >1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A Length = 224 | Back alignment and structure |
|---|
Score = 137 bits (347), Expect = 8e-37
Identities = 54/174 (31%), Positives = 89/174 (51%), Gaps = 12/174 (6%)
Query: 7 TTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPT 66
+ +QQ +I PI++G DVL ++Q+G+GKT ++I +Q++ A+++ PT
Sbjct: 38 SAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQ------ALMLAPT 91
Query: 67 RELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHT 126
RELALQ ++ L I GG + +R I+V TPGR+ D+ +
Sbjct: 92 RELALQIQKVVMALAF-HMDIKVHACIGGTSFVEDAEGLRDA-QIVVGTPGRVFDNIQR- 148
Query: 127 ETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPA 180
+ K++ +LDEAD +L G++ I +I P Q +LLSAT+
Sbjct: 149 RRFRTDKIKMFILDEADEMLSSGFKEQIY---QIFTLLPPTTQVVLLSATMPND 199
|
| >1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A Length = 224 | Back alignment and structure |
|---|
Score = 61.8 bits (151), Expect = 1e-10
Identities = 22/68 (32%), Positives = 36/68 (52%), Gaps = 3/68 (4%)
Query: 189 TLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLTPAVQRLAGM 248
+ K++ +LDEAD +L G++ I +I P Q VLLSAT+ V +
Sbjct: 150 RFRTDKIKMFILDEADEMLSSGFKEQIY---QIFTLLPPTTQVVLLSATMPNDVLEVTTK 206
Query: 249 TLQNPIQI 256
++NP++I
Sbjct: 207 FMRNPVRI 214
|
| >3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens} Length = 300 | Back alignment and structure |
|---|
Score = 148 bits (375), Expect = 1e-39
Identities = 64/298 (21%), Positives = 132/298 (44%), Gaps = 24/298 (8%)
Query: 317 ATQDMADYHTELLSTKKKIKKLKEYNIDPDNYEIPKKTE-------VKSGPISSLFQNNP 369
+ A+ + L ++KIK + N K E +S + N
Sbjct: 12 EQEAAAESLSNLHLKEEKIKPDTNGAVVKTNANAEKTDEEEKEDRAAQSLLNKLIRSNLV 71
Query: 370 DIPNVPTRRLKPVSEALFAPTSYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDG 429
D N + + L++ S+EE + P + + + M + + +Q+ ++ +L
Sbjct: 72 DNTNQVEVLQRDPNSPLYSVKSFEEL-RLKPQLLQGVYA-MGFNRPSKIQENALPLMLAE 129
Query: 430 G--DVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFT 487
+++ +SQ+G+GKT A+ + ++ +++ + + PT ELALQT ++
Sbjct: 130 PPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQ------CLCLSPTYELALQTGKVIE 183
Query: 488 KLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLV 547
++ K + + ++ G K++ + I++ TPG +LD C + + K++ V
Sbjct: 184 QMGKFYPELKLAYAVRGNKLER---GQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFV 240
Query: 548 LDEADRILD-QGYERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQI 604
LDEAD ++ QG++ + I + Q +L SAT +V + A + +P I
Sbjct: 241 LDEADVMIATQGHQDQS---IRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVI 295
|
| >3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens} Length = 300 | Back alignment and structure |
|---|
Score = 132 bits (333), Expect = 4e-34
Identities = 42/175 (24%), Positives = 88/175 (50%), Gaps = 15/175 (8%)
Query: 9 VQQLSIQPILDGG--DVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPT 66
+Q+ ++ +L +++ +SQ+G+GKT A+ + ++ +++ + + PT
Sbjct: 118 IQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQ------CLCLSPT 171
Query: 67 RELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHT 126
ELALQT ++ ++ K + + ++ G K++ + I++ TPG +LD C
Sbjct: 172 YELALQTGKVIEQMGKFYPELKLAYAVRGNKLER---GQKISEQIVIGTPGTVLDWCSKL 228
Query: 127 ETLKFSKVEHLVLDEADRILD-QGYERDIAEFLEILKKQKPQFQSILLSATLTPA 180
+ + K++ VLDEAD ++ QG++ + I + Q +L SAT +
Sbjct: 229 KFIDPKKIKVFVLDEADVMIATQGHQDQS---IRIQRMLPRNCQMLLFSATFEDS 280
|
| >2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens} Length = 185 | Back alignment and structure |
|---|
Score = 118 bits (298), Expect = 1e-30
Identities = 48/150 (32%), Positives = 72/150 (48%), Gaps = 9/150 (6%)
Query: 626 KQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENI 685
Q + + L + ++S LVF+ T+ AD + L E
Sbjct: 21 TQKVVWVEESDKRSFLLDLLN------ATGKDSLTLVFVETKKGADSLEDFLYH---EGY 71
Query: 686 AFFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYV 745
A +HG SQ +R E FRS KS +L+ T VAARGLD+ V ++ + PS +YV
Sbjct: 72 ACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYV 131
Query: 746 HRVGRTARVGHEGSSLLFLIPSEVKLVEEL 775
HR+GRT RVG+ G + F + + ++L
Sbjct: 132 HRIGRTGRVGNLGLATSFFNERNINITKDL 161
|
| >3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A Length = 212 | Back alignment and structure |
|---|
Score = 119 bits (300), Expect = 1e-30
Identities = 64/218 (29%), Positives = 92/218 (42%), Gaps = 29/218 (13%)
Query: 622 PDSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVL 681
P + ++ + P + RL L+ + V + + +VF T+ + E+ +L
Sbjct: 3 PVTYEEEAVPAPVRGRLEVLSDLL-----YVASPD--RAMVFTRTKAETE---EIAQGLL 52
Query: 682 GENIAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSS 741
LHG +SQ ER V FR + VL+ TDVAARGLD+P VD +V Y P +
Sbjct: 53 RLGHPAQALHGDLSQGERERVLGAFRQGEVRVLVATDVAARGLDIPQVDLVVHYRLPDRA 112
Query: 742 TDYVHRVGRTARVGHEGSSLLFLIPSEVKLVEELQNR-RIRIEEIKL----------KDC 790
Y HR GRT R G G +L P E + VE L+ R + +
Sbjct: 113 EAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGRRFKRVNPPTPEEVLEAKWRH 172
Query: 791 LQNLLSVKMEGDLSR--------LADGNVETAATALQM 820
L L+ E D A+G VE A L +
Sbjct: 173 LLARLARVPEKDYRLYQDFAGRLFAEGRVEVVAALLAL 210
|
| >3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus} Length = 300 | Back alignment and structure |
|---|
Score = 119 bits (300), Expect = 9e-30
Identities = 68/222 (30%), Positives = 95/222 (42%), Gaps = 31/222 (13%)
Query: 624 SLKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGE 683
+ ++ + P + RL L+ + V + + +VF T+ + E+ +L
Sbjct: 2 TYEEEAVPAPVRGRLEVLSDLL-----YVASPD--RAMVFTRTKAETE---EIAQGLLRL 51
Query: 684 NIAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTD 743
LHG MSQ ER V FR + VL+ TDVAARGLD+P VD +V Y P +
Sbjct: 52 GHPAQALHGDMSQGERERVMGAFRQGEVRVLVATDVAARGLDIPQVDLVVHYRMPDRAEA 111
Query: 744 YVHRVGRTARVGHEGSSLLFLIPSE---VKLVEELQNRRIR---------IEEIKLKDCL 791
Y HR GRT R G G +L P E V+ +E RR + + E K + L
Sbjct: 112 YQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGRRFKRVNPPTPEEVLEAKWRHLL 171
Query: 792 QNLLSVKMEGDLSR--------LADGNVETAATALQMSFESA 825
L V E D A+G VE A L + A
Sbjct: 172 ARLARV-PEKDYRLYQDFAGRLFAEGRVEVVAALLALLLGGA 212
|
| >2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens} Length = 191 | Back alignment and structure |
|---|
Score = 111 bits (281), Expect = 2e-28
Identities = 40/167 (23%), Positives = 69/167 (41%), Gaps = 13/167 (7%)
Query: 598 LQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEE 657
+ +D + + + Q + ++V L + +
Sbjct: 5 HHHSSGVDLGTENLYFQSMGAAS--LDVIQEVEYVKEEAKMVYLLECL--------QKTP 54
Query: 658 SKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSVKSGVLICT 717
+L+F + D E L + + +HG Q ERT+ + FR K VL+ T
Sbjct: 55 PPVLIFAEKKADVDAIHEYLLL---KGVEAVAIHGGKDQEERTKAIEAFREGKKDVLVAT 111
Query: 718 DVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFL 764
DVA++GLD P + ++ Y P +YVHR+GRT G+ G + F+
Sbjct: 112 DVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGCSGNTGIATTFI 158
|
| >2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli} Length = 170 | Back alignment and structure |
|---|
Score = 110 bits (278), Expect = 3e-28
Identities = 40/138 (28%), Positives = 64/138 (46%), Gaps = 6/138 (4%)
Query: 652 VNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSVKS 711
+ + E ++ +VF+ ++ L I L G M Q +R E K +
Sbjct: 25 LKQPEATRSIVFVRKRERVHELANWLRE---AGINNCYLEGEMVQGKRNEAIKRLTEGRV 81
Query: 712 GVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPSEVKL 771
VL+ TDVAARG+D+P V + + P S Y+HR+GRTAR G +G+++ + + L
Sbjct: 82 NVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLL 141
Query: 772 ---VEELQNRRIRIEEIK 786
V I+ I
Sbjct: 142 LGKVGRYIEEPIKARVID 159
|
| >2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis} Length = 163 | Back alignment and structure |
|---|
Score = 110 bits (277), Expect = 4e-28
Identities = 39/165 (23%), Positives = 76/165 (46%), Gaps = 11/165 (6%)
Query: 623 DSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLG 682
+++ I + + L + + ++F T++ + T+ L
Sbjct: 8 RNIEHAVIQVREENKFSLL-------KDVLMTENPDSCIIFCRTKEHVNQLTDELD---D 57
Query: 683 ENIAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSST 742
K+HG M Q +R +V F+ + L+ TDVAARG+D+ + ++ Y P
Sbjct: 58 LGYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVATDVAARGIDIENISLVINYDLPLEKE 117
Query: 743 DYVHRVGRTARVGHEGSSLLFLIPSEVKLVEELQNR-RIRIEEIK 786
YVHR GRT R G++G ++ F+ E + + +++ I++I+
Sbjct: 118 SYVHRTGRTGRAGNKGKAISFVTAFEKRFLADIEEYIGFEIQKIE 162
|
| >1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19 Length = 165 | Back alignment and structure |
|---|
Score = 104 bits (261), Expect = 6e-26
Identities = 38/126 (30%), Positives = 67/126 (53%), Gaps = 4/126 (3%)
Query: 661 LVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVA 720
++F T+ + T L + ++ + Q ER + K FRS S +LI TD+
Sbjct: 34 VIFCNTRRKVEELTTKLR---NDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLL 90
Query: 721 ARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPSEVKLVEELQNR-R 779
ARG+D+ V ++ Y P++ +Y+HR+GR R G +G ++ F+ +V + EL+
Sbjct: 91 ARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYS 150
Query: 780 IRIEEI 785
+IEE+
Sbjct: 151 TQIEEL 156
|
| >1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19 Length = 172 | Back alignment and structure |
|---|
Score = 101 bits (254), Expect = 6e-25
Identities = 38/165 (23%), Positives = 78/165 (47%), Gaps = 12/165 (7%)
Query: 623 DSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLG 682
L+Q+++ + L +L N ++++F+ + +LL
Sbjct: 4 HGLQQYYVKLKDNEKNRKLFD-LLDV-LEFN-----QVVIFVKSVQRCIALAQLLV---E 53
Query: 683 ENIAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSST 742
+N +H M Q ER ++ F+ + +L+ T++ RG+D+ V+ Y P S
Sbjct: 54 QNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSD 113
Query: 743 DYVHRVGRTARVGHEGSSLLFLIP-SEVKLVEELQNR-RIRIEEI 785
Y+HRV R R G +G ++ F+ ++ K++ ++Q+R + I E+
Sbjct: 114 TYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISEL 158
|
| >2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens} Length = 175 | Back alignment and structure |
|---|
Score = 97.7 bits (244), Expect = 1e-23
Identities = 35/139 (25%), Positives = 67/139 (48%), Gaps = 10/139 (7%)
Query: 658 SKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSVKSGVLICT 717
+ ++F T+ A + T + + L G ++ +R + + FR K VLI T
Sbjct: 35 GQAIIFCQTRRNAKWLTVEMI---QDGHQVSLLSGELTVEQRASIIQRFRDGKEKVLITT 91
Query: 718 DVAARGLDLPLVDWIVQYTAPSSSTD------YVHRVGRTARVGHEGSSLLFLIPSEVKL 771
+V ARG+D+ V +V + P + Y+HR+GRT R G +G + + E+
Sbjct: 92 NVCARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKKGLAFNMIEVDELPS 151
Query: 772 VEELQNR-RIRIEEIKLKD 789
+ ++Q+ I+++ +D
Sbjct: 152 LMKIQDHFNSSIKQLNAED 170
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 92.6 bits (229), Expect = 3e-19
Identities = 94/660 (14%), Positives = 193/660 (29%), Gaps = 208/660 (31%)
Query: 263 DIHNTTDSL--VIPDSLKQHFIVTP-PKLRLVALASFILGKCQNVNEDEESKMLVFMATQ 319
D + D ++ H I++ + L +L K + + + F+
Sbjct: 34 DCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQK-------FVEEV 86
Query: 320 DMADYHTELLSTKKKIKKLKEYNIDPDNYEIPKKTEVKSGPISSLFQNNPDIP--NVPTR 377
+Y + L + +K P T + L+ +N NV
Sbjct: 87 LRINY--KFLMSP-----IKTEQRQPS-----MMTRMYIEQRDRLYNDNQVFAKYNVS-- 132
Query: 378 RLKPVSEALFAPTSYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQ 437
RL+P + +++ L L ++P +VL+
Sbjct: 133 RLQPYLK-----------------LRQAL--------------LELRP---AKNVLIDGV 158
Query: 438 TGSGKT-LAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWI 496
GSGKT +A + + + I+ + L LE+ KL I
Sbjct: 159 LGSGKTWVA-----LDVCLSYKVQCKMDFKIFW-LNLKNCNSPETVLEMLQKLL---YQI 209
Query: 497 VPSWLTGGEKMKSEKARI---RKGISILVATPGR-----LLDH-------------CK-- 533
P+W + + + K RI + + L+ + +L + CK
Sbjct: 210 DPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKIL 269
Query: 534 -------HTETLKFSKVEHLVLDEADRILDQGYERDI-AEFLEILKKQKP-QFQSI---- 580
T+ L + H+ LD L + + ++L+ + P + +
Sbjct: 270 LTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRR 329
Query: 581 --LLSATLTPAVQR------LAGMTLQNPIQ--IDAADSTDIHNTTDSLVI-PDSLKQHF 629
+++ ++ + + L I+ ++ + + D L + P S
Sbjct: 330 LSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAH--- 386
Query: 630 IVTPPKLRLVAL--------ASFILGKCQN---VNEDEESKMLVFMATQ--------DMA 670
I P L L + ++ K V + + + + +
Sbjct: 387 I--PTIL-LSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEY 443
Query: 671 DYHTELL--------------STVLGENIAFFKL--HGSMSQSERTEVFKTFRSVKSGVL 714
H ++ + + + H + E E FR V
Sbjct: 444 ALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHH--LKNIEHPERMTLFRMVF---- 497
Query: 715 ICTDVAARGLDLPLVDWIVQ--------YTAPSSSTDYVHRVGRTARVGHEGSSLLFLIP 766
LD ++ Q + A S + + ++ ++
Sbjct: 498 ---------LDF---RFLEQKIRHDSTAWNASGSILNTLQQLKFYKP---------YICD 536
Query: 767 SEVKLVEELQNRRIRIEEIK--LKDCLQNLLSVKMEGDLSRLA-----DGNVETAATALQ 819
++ K E L + I L +NL+ K DL R+A + E A +Q
Sbjct: 537 NDPKY-ERL------VNAILDFLPKIEENLICSK-YTDLLRIALMAEDEAIFEEAHKQVQ 588
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 82.2 bits (202), Expect = 4e-16
Identities = 85/604 (14%), Positives = 182/604 (30%), Gaps = 190/604 (31%)
Query: 1 MNITQVTTVQQL--SIQPILDGGDVLVRSQTGSGKT-LAYAIPIIQKLQEMRPKISRKDG 57
N++++ +L ++ + +VL+ GSGKT +A + + +
Sbjct: 129 YNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVA-----LDVCLSYKVQCKMDFK 183
Query: 58 IYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPG 117
I+ + L LE+ KL I P+W + + + K RI + L
Sbjct: 184 IFW-LNLKNCNSPETVLEMLQKLL---YQIDPNWTSRSDHSSNIKLRIHSIQAELR---- 235
Query: 118 RLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATL 177
RLL + L LVL ++ + + ILL T
Sbjct: 236 RLLKSKPYENCL-------LVLL------------NVQN-AKAWNAFNLSCK-ILL--T- 271
Query: 178 TPATCWCKHTETLKFSKVEHLVLDEADRILDQGYERDI-AEFLEI----LKKQK----PQ 228
T + + T+ L + H+ LD L + + ++L+ L ++ P+
Sbjct: 272 ---TRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPR 328
Query: 229 FQSVLLSATLTPAVQR------LAGMTLQNPIQ--IDAADSTDIHNTTDSLVI-PDSLKQ 279
S +++ ++ + + L I+ ++ + + D L + P S
Sbjct: 329 RLS-IIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAH- 386
Query: 280 HFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMAD---------YHTELLS 330
I P L L + +V + + ++ + + + + L
Sbjct: 387 --I--PTIL-LSLI-------WFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLE 434
Query: 331 TKKKIKKLKEYN---IDPDNYEIPKKTEVKSGPISSLFQNNPDIPNVPTRR--------- 378
K K++ + + D+Y IPK F ++ D+ +
Sbjct: 435 LKVKLENEYALHRSIV--DHYNIPKT-----------FDSD-DLIPPYLDQYFYSHIGHH 480
Query: 379 LKPVSEALFAPTSYEEFPGIH---PFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVR 435
LK + F + F+++ + R
Sbjct: 481 LKNIEHPE----RMTLFRMVFLDFRFLEQKI----------------------------R 508
Query: 436 SQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTW 495
+ + + +Q+L+ +P I D P E + + F
Sbjct: 509 HDSTAWNASGSILNTLQQLKFYKPYICDND--------PKYERLVNAILDF--------- 551
Query: 496 IVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLK--FSKVEHLVLDEADR 553
+ L K+T+ L+ + + +EA +
Sbjct: 552 --------------------------LPKIEENLICSKYTDLLRIALMAEDEAIFEEAHK 585
Query: 554 ILDQ 557
+ +
Sbjct: 586 QVQR 589
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 57.2 bits (137), Expect = 3e-08
Identities = 71/457 (15%), Positives = 132/457 (28%), Gaps = 132/457 (28%)
Query: 531 HCKHTET------LKFSKVEHLVLDEADRILDQGYERDIAEFL-EILKKQKPQFQSILLS 583
H H + ++ + + D D +D+ + IL K+ + I++S
Sbjct: 3 HHHHMDFETGEHQYQYKDILSVFEDAFVDNFDC---KDVQDMPKSILSKE--EIDHIIMS 57
Query: 584 ATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALAS 643
RL L V + L+ ++
Sbjct: 58 KDAVSGTLRLFWTLLSKQ-----------EEMVQKFV-EEVLRINY-------------K 92
Query: 644 FILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVF 703
F++ + +++ +D + +N F K + S R + +
Sbjct: 93 FLMSPIKTEQRQPSMMTRMYIEQRD----------RLYNDNQVFAKYNVS-----RLQPY 137
Query: 704 KTFRSV------KSGVLIC-------TDVAARGL-DLPLVD-------WIV--QYTAPSS 740
R VLI T VA + W+ +P +
Sbjct: 138 LKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPET 197
Query: 741 STDYVHRVGRTARVGHEGSSLLFLI-PSEVKLVEELQNRRIRIEEIKLKDCLQNLLSVKM 799
+ + LL+ I P+ + N ++RI I+ + L+ LL K
Sbjct: 198 VLEML-------------QKLLYQIDPNWTSRSDHSSNIKLRIHSIQAE--LRRLLKSKP 242
Query: 800 -EGDLSRLADGNVETAATALQMSFESAVLQQKILHTSACKGYTSWVRFYASYSKDLRHI- 857
E L L + V+ A + KIL T+ K T ++ + L H
Sbjct: 243 YENCLLVLLN--VQNAKAWNAFNLSC-----KILLTTRFKQVTDFLSAATTTHISLDHHS 295
Query: 858 --FNFKQIHLGHFAKSF----------ALRDAPSVISGIG-------------KPKNKEE 892
++ K L P +S I K N ++
Sbjct: 296 MTLTPDEV-KSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDK 354
Query: 893 LKNK-KMAINKEKSFKQRGNFSKKQMLSEF--DSGLP 926
L + ++N + + R F LS F + +P
Sbjct: 355 LTTIIESSLNVLEPAEYRKMF---DRLSVFPPSAHIP 388
|
| >1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19 Length = 494 | Back alignment and structure |
|---|
Score = 76.8 bits (188), Expect = 1e-14
Identities = 37/166 (22%), Positives = 67/166 (40%), Gaps = 14/166 (8%)
Query: 627 QHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIA 686
+ + PK+ + I+ + + + SK++VF ++ A L G
Sbjct: 336 KEIGLDHPKMDKL---KEII--REQLQRKQNSKIIVFTNYRETAKKIVNELVK-DGIKAK 389
Query: 687 FFKLHGS------MSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSS 740
F S +SQ E+ + F + VL+ T V GLD+P VD +V Y S
Sbjct: 390 RFVGQASKENDRGLSQREQKLILDEFARGEFNVLVATSVGEEGLDVPEVDLVVFYEPVPS 449
Query: 741 STDYVHRVGRTARVGHEGSSLLFLIPSEVKLVEELQNRRIRIEEIK 786
+ + R GRT R H ++ L+ + + R + + ++
Sbjct: 450 AIRSIQRRGRTGR--HMPGRVIILMAKGTRDEAYYWSSRQKEKIMQ 493
|
| >1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19 Length = 494 | Back alignment and structure |
|---|
Score = 74.4 bits (182), Expect = 5e-14
Identities = 63/366 (17%), Positives = 116/366 (31%), Gaps = 24/366 (6%)
Query: 11 QLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELA 70
Q I + L+ TG GKTL + +L + K+ +++ PT+ L
Sbjct: 14 QEVIYAKCKETNCLIVLPTGLGKTLIAMMIAEYRLTKYGGKV--------LMLAPTKPLV 65
Query: 71 LQTLEIFTKLCKSFTWIVPSWLTG--GEKMKSEKARIRKGISILVATPGRLLDHCKHTET 128
LQ E + + P + GEK E+++ ++VATP + +
Sbjct: 66 LQHAE----SFRRLFNLPPEKIVALTGEKSPEERSKAWARAKVIVATPQTIENDLLA-GR 120
Query: 129 LKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPATCW-CKHT 187
+ V +V DEA R + IA K+Q I L+A+ +
Sbjct: 121 ISLEDVSLIVFDEAHRAVGNYAYVFIARE---YKRQAKNPLVIGLTASPGSTPEKIMEVI 177
Query: 188 ETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLTPAVQRLAG 247
L +E+ + D + + E++ + + + LL L A++ LA
Sbjct: 178 NNLGIEHIEYRSENSPD--VRPYVKGIRFEWVRVDLPEIYKEVRKLLREMLRDALKPLAE 235
Query: 248 MTLQNPIQIDAADS---TDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALASFILGKCQNV 304
L D + + + + ++ + A +L
Sbjct: 236 TGLLESSSPDIPKKEVLRAGQIINEEMAKGNHDLRGLLLYHAMALKLHHAIELLETQGLS 295
Query: 305 NEDEESKMLVFMATQDMADYHTELLSTKKKIKKLKEYNIDPDNYEIPKKTEVKSGPISSL 364
K L A E+ S K+ K + + K + I
Sbjct: 296 ALRAYIKKLYEEAKAGSTKASKEIFSDKRMKKAISLLVQAKEIGLDHPKMDKLKEIIREQ 355
Query: 365 FQNNPD 370
Q +
Sbjct: 356 LQRKQN 361
|
| >1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19 Length = 494 | Back alignment and structure |
|---|
Score = 72.1 bits (176), Expect = 3e-13
Identities = 39/168 (23%), Positives = 65/168 (38%), Gaps = 18/168 (10%)
Query: 420 QLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELA 479
Q I + L+ TG GKTL + +L + K+ +++ PT+ L
Sbjct: 14 QEVIYAKCKETNCLIVLPTGLGKTLIAMMIAEYRLTKYGGKV--------LMLAPTKPLV 65
Query: 480 LQTLEIFTKLCKSFTWIVPSWLTG--GEKMKSEKARIRKGISILVATPGRLLDHCKHTET 537
LQ E + + P + GEK E+++ ++VATP + +
Sbjct: 66 LQHAE----SFRRLFNLPPEKIVALTGEKSPEERSKAWARAKVIVATPQTIENDLLA-GR 120
Query: 538 LKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSAT 585
+ V +V DEA R + IA K+Q I L+A+
Sbjct: 121 ISLEDVSLIVFDEAHRAVGNYAYVFIARE---YKRQAKNPLVIGLTAS 165
|
| >4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A* Length = 556 | Back alignment and structure |
|---|
Score = 67.7 bits (164), Expect = 8e-12
Identities = 32/191 (16%), Positives = 66/191 (34%), Gaps = 7/191 (3%)
Query: 10 QQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTREL 69
Q QP ++G + L+ + TGSGKT +I I + + P + ++ +
Sbjct: 12 QIELAQPAINGKNALICAPTGSGKTFV-SILICEHHFQNMPAGRKAKVVFLA---TKVPV 67
Query: 70 ALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETL 129
Q +F + + V ++G ++ + I+V TP L++ +
Sbjct: 68 YEQQKNVFKHHFERQGYSVQG-ISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLT 126
Query: 130 KFSKVEHLVLDEADRIL-DQGYERDIAEFLE-ILKKQKPQFQSILLSATLTPATCWCKHT 187
S ++ DE + Y + +LE Q + L+A++
Sbjct: 127 SLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQKFNSASQLPQILGLTASVGVGNAKNIEE 186
Query: 188 ETLKFSKVEHL 198
+
Sbjct: 187 TIEHICSLCSY 197
|
| >4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A* Length = 556 | Back alignment and structure |
|---|
Score = 66.9 bits (162), Expect = 2e-11
Identities = 35/205 (17%), Positives = 76/205 (37%), Gaps = 8/205 (3%)
Query: 419 QQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTREL 478
Q QP ++G + L+ + TGSGKT +I I + + P + ++ +
Sbjct: 12 QIELAQPAINGKNALICAPTGSGKTFV-SILICEHHFQNMPAGRKAKVVFLA---TKVPV 67
Query: 479 ALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETL 538
Q +F + + V ++G ++ + I+V TP L++ +
Sbjct: 68 YEQQKNVFKHHFERQGYSVQG-ISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLT 126
Query: 539 KFSKVEHLVLDEADRIL-DQGYERDIAEFLE-ILKKQKPQFQSILLSATLTPAVQRLAGM 596
S ++ DE + Y + +LE Q + L+A++ +
Sbjct: 127 SLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQKFNSASQLPQILGLTASVGVGNAKNIEE 186
Query: 597 TLQNPIQI-DAADSTDIHNTTDSLV 620
T+++ + D I +++
Sbjct: 187 TIEHICSLCSYLDIQAISTVRENIQ 211
|
| >4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A* Length = 556 | Back alignment and structure |
|---|
Score = 64.6 bits (156), Expect = 8e-11
Identities = 27/152 (17%), Positives = 56/152 (36%), Gaps = 16/152 (10%)
Query: 653 NEDEESKMLVFMATQDMADYHTELLS---TVLGENIAFFKLHGS------MSQSERTEVF 703
+ +++ L+F T+ + + + + G M+ + V
Sbjct: 386 RYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVL 445
Query: 704 KTFRSVKS-GVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLL 762
F++ K +LI T VA G+D+ + +V Y + T + GR R GS +
Sbjct: 446 DAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GR--AAGSKCI 502
Query: 763 FLIPSEVKLVEELQNRRIRIEEIKLKDCLQNL 794
+ + E NR +E + ++ +
Sbjct: 503 LVTSKTEVVENEKCNRY---KEEMMNKAVEKI 531
|
| >2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A* Length = 472 | Back alignment and structure |
|---|
Score = 66.8 bits (163), Expect = 2e-11
Identities = 62/406 (15%), Positives = 125/406 (30%), Gaps = 79/406 (19%)
Query: 419 QQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTREL 478
Q+ +++ L + TGSGKT A+ I +L +I++PT L
Sbjct: 98 QEKALERWLVDKRGCIVLPTGSGKTHV-AMAAINELSTP-----------TLIVVPTLAL 145
Query: 479 ALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRL---------- 528
A Q E F +G K + V+T
Sbjct: 146 AEQWKERL----GIFGEEYVGEFSGRIKELK---------PLTVSTYDSAYVNAEKLGNR 192
Query: 529 -----LDHCKHTETLKFSKVEHLVLDEADRIL--------DQGYERDIAEFL-------- 567
D H + ++ + A L + G + E +
Sbjct: 193 FMLLIFDEVHHLPAESYVQI--AQMSIAPFRLGLTATFEREDGRHEILKEVVGGKVFELF 250
Query: 568 --EILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTD-SLVIPDS 624
+ K ++ + L + + Q A + D + ++ S
Sbjct: 251 PDSLAGKHLAKYTIKRIFVPLAEDERVEYEKREKVYKQFLRARGITLRRAEDFNKIVMAS 310
Query: 625 LKQHFIVTPPKL-----RLVALASFILGKCQN-VNEDEESKMLVFMATQDMADYHTELLS 678
+ R+ + + K + + + K+++F ++ +++
Sbjct: 311 GYDERAYEALRAWEEARRIAFNSKNKIRKLREILERHRKDKIIIFTRHNELVYRISKVF- 369
Query: 679 TVLGENIAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAP 738
I S+ ER E+ + FR+ + ++ + V G+D+P + V +
Sbjct: 370 -----LIPAI--THRTSREEREEILEGFRTGRFRAIVSSQVLDEGIDVPDANVGVI-MSG 421
Query: 739 SSS-TDYVHRVGRTARVGHEGSSLLF--LIPSEVKLVEELQNRRIR 781
S S +Y+ R+GR R + LI V + R+
Sbjct: 422 SGSAREYIQRLGRILRPSKGKKEAVLYELISRGTGEVNTARRRKNA 467
|
| >2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A* Length = 472 | Back alignment and structure |
|---|
Score = 44.4 bits (105), Expect = 2e-04
Identities = 32/168 (19%), Positives = 56/168 (33%), Gaps = 37/168 (22%)
Query: 10 QQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTREL 69
Q+ +++ L + TGSGKT A+ I +L +I++PT L
Sbjct: 98 QEKALERWLVDKRGCIVLPTGSGKTHV-AMAAINELSTP-----------TLIVVPTLAL 145
Query: 70 ALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETL 129
A Q E F +G K + V+T +
Sbjct: 146 AEQWKERL----GIFGEEYVGEFSGRIKELK---------PLTVSTYDSAYVN----AEK 188
Query: 130 KFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATL 177
++ L+ DE + + Y + I + F+ + L+AT
Sbjct: 189 LGNRFMLLIFDEVHHLPAESYVQ-------IAQMSIAPFR-LGLTATF 228
|
| >3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus} Length = 555 | Back alignment and structure |
|---|
Score = 65.7 bits (159), Expect = 4e-11
Identities = 34/225 (15%), Positives = 79/225 (35%), Gaps = 9/225 (4%)
Query: 10 QQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTREL 69
Q P G + ++ + TG GKT + L++ K V +
Sbjct: 9 QLELALPAKKGKNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGK----VVFFANQIPV 64
Query: 70 ALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETL 129
Q +F++ + + + S ++G I + I++ TP L+++ +
Sbjct: 65 YEQQATVFSRYFERLGYNIAS-ISGATSDSVSVQHIIEDNDIIILTPQILVNNLNNGAIP 123
Query: 130 KFSKVEHLVLDEADRILDQG-YERDIAEFLE--ILKKQKPQFQSILLSATLTPATCWCKH 186
S ++ DE Y + + +L+ + + + P Q + L+A++
Sbjct: 124 SLSVFTLMIFDECHNTSKNHPYNQIMFRYLDHKLGESRDPLPQVVGLTASVGVGDAKTAE 183
Query: 187 TETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQS 231
K+ LD + + ++ + + +K + S
Sbjct: 184 EAMQHICKLCAA-LDASVIATVRDNVAELEQVVYKPQKISRKVAS 227
|
| >3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus} Length = 555 | Back alignment and structure |
|---|
Score = 64.1 bits (155), Expect = 1e-10
Identities = 31/185 (16%), Positives = 70/185 (37%), Gaps = 8/185 (4%)
Query: 419 QQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTREL 478
Q P G + ++ + TG GKT + L++ K V +
Sbjct: 9 QLELALPAKKGKNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGK----VVFFANQIPV 64
Query: 479 ALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETL 538
Q +F++ + + + S ++G I + I++ TP L+++ +
Sbjct: 65 YEQQATVFSRYFERLGYNIAS-ISGATSDSVSVQHIIEDNDIIILTPQILVNNLNNGAIP 123
Query: 539 KFSKVEHLVLDEADRILDQG-YERDIAEFLE--ILKKQKPQFQSILLSATLTPAVQRLAG 595
S ++ DE Y + + +L+ + + + P Q + L+A++ + A
Sbjct: 124 SLSVFTLMIFDECHNTSKNHPYNQIMFRYLDHKLGESRDPLPQVVGLTASVGVGDAKTAE 183
Query: 596 MTLQN 600
+Q+
Sbjct: 184 EAMQH 188
|
| >3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus} Length = 555 | Back alignment and structure |
|---|
Score = 60.3 bits (145), Expect = 2e-09
Identities = 29/157 (18%), Positives = 60/157 (38%), Gaps = 20/157 (12%)
Query: 650 QNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFK-----------LHGSMSQSE 698
+ + E+K ++F+ T+ + D + + ++F K M+
Sbjct: 382 EEYHLKPETKTILFVKTRALVDALKKWIEEN--PALSFLKPGILTGRGRTNRATGMTLPA 439
Query: 699 RTEVFKTFRSV-KSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHE 757
+ V + FR+ + +LI T VA G+D+ + ++ Y + + GR R
Sbjct: 440 QKCVLEAFRASGDNNILIATSVADEGIDIAECNLVILYEYVGNVIKMIQTRGR-GR--AR 496
Query: 758 GSSLLFLIPSEVKLVEELQNRRIRIEEIKLKDCLQNL 794
S L S + +E N +E + + + L
Sbjct: 497 DSKCFLLTSSADVIEKEKANMI---KEKIMNESILRL 530
|
| >4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos} Length = 936 | Back alignment and structure |
|---|
Score = 65.7 bits (159), Expect = 4e-11
Identities = 38/224 (16%), Positives = 78/224 (34%), Gaps = 20/224 (8%)
Query: 653 NEDEESKMLVFMATQDMADYHTELLSTVLG-ENIAFFKLHGS--------MSQSERTEVF 703
+ +++ L+F T+ + + + I L G M+ + V
Sbjct: 627 RYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVL 686
Query: 704 KTFRS-VKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLL 762
F++ + +LI T VA G+D+ + +V Y + T + GR R GS +
Sbjct: 687 DAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GR--AAGSKCI 743
Query: 763 FLIPSEVKLVEELQNRRIRIEEIKLKDCLQNLLSVKMEGDLSRLADGNVETAATALQMSF 822
+ + E NR +E + ++ + E ++ + ++
Sbjct: 744 LVTSKTEVVENEKCNRY---KEEMMNKAVEKIQKWDEETFAKKIHNLQMKERVLRDSRRK 800
Query: 823 ESAVLQQKILHTSACKGYTSWVRFYASYSKDLRHIFNFKQIHLG 866
E + C ++ A + D+R I + I LG
Sbjct: 801 EIKPKVVEGQKNLLCGKCKAY----ACSTDDIRIIKDSHHIVLG 840
|
| >4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos} Length = 936 | Back alignment and structure |
|---|
Score = 60.0 bits (144), Expect = 3e-09
Identities = 32/191 (16%), Positives = 66/191 (34%), Gaps = 7/191 (3%)
Query: 10 QQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTREL 69
Q QP ++G + L+ + TGSGKT +I I + + P + ++ +
Sbjct: 253 QIELAQPAINGKNALICAPTGSGKTFV-SILICEHHFQNMPAGRKAKVVFLA---TKVPV 308
Query: 70 ALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETL 129
Q +F + + V ++G ++ + I+V TP L++ +
Sbjct: 309 YEQQKNVFKHHFERQGYSVQG-ISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLT 367
Query: 130 KFSKVEHLVLDEADRIL-DQGYERDIAEFLE-ILKKQKPQFQSILLSATLTPATCWCKHT 187
S ++ DE + Y + +LE Q + L+A++
Sbjct: 368 SLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQKFNSASQLPQILGLTASVGVGNAKNIEE 427
Query: 188 ETLKFSKVEHL 198
+
Sbjct: 428 TIEHICSLCSY 438
|
| >4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos} Length = 936 | Back alignment and structure |
|---|
Score = 58.4 bits (140), Expect = 9e-09
Identities = 59/402 (14%), Positives = 124/402 (30%), Gaps = 39/402 (9%)
Query: 201 DEADRILDQGYERDIA---EFLEILKKQKPQ-----FQSVLLSATLTPAVQRLAGMTLQN 252
+ +RI + FL+ + + + + +L+A T + +
Sbjct: 39 ELRERIRKEEERGVSGAAALFLDAVLQLEARGWFRGMLDAMLAAGYTGLAEAIENWDFSK 98
Query: 253 PIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKM 312
+ ++H + L+ V P L + C E EE +
Sbjct: 99 L------EKLELHRQLLKRIEATMLE----VDPVALIPY------ISTCLIDRECEE--I 140
Query: 313 LVFMATQDMADYHTELLSTKKKIKK------LKEYNIDPDNYEIPKKTEVKSGPISSLFQ 366
+ A T+L+ + K L+ Y + +++ +
Sbjct: 141 QQISENRSKAAGITKLIECLCRSDKEHWPKSLQLALDTTGYYRASELWDIREDNAKDVDS 200
Query: 367 NNPDIPNVPTRRLKPVSEALFAPTSYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPI 426
D SE + E G + + Q QP
Sbjct: 201 EMTDASEDCLEASMTYSEEAEPDDNLSENLGSAAEGIGKPPPVYETKKARSYQIELAQPA 260
Query: 427 LDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIF 486
++G + L+ + TGSGKT +I I + + P + ++ + Q +F
Sbjct: 261 INGKNALICAPTGSGKTFV-SILICEHHFQNMPAGRKAKVVFLA---TKVPVYEQQKNVF 316
Query: 487 TKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHL 546
+ + V ++G ++ + I+V TP L++ + S +
Sbjct: 317 KHHFERQGYSVQG-ISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLM 375
Query: 547 VLDEADRIL-DQGYERDIAEFLE-ILKKQKPQFQSILLSATL 586
+ DE + Y + +LE Q + L+A++
Sbjct: 376 IFDECHNTTGNHPYNVLMTRYLEQKFNSASQLPQILGLTASV 417
|
| >2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A* Length = 720 | Back alignment and structure |
|---|
Score = 63.7 bits (155), Expect = 2e-10
Identities = 73/397 (18%), Positives = 141/397 (35%), Gaps = 53/397 (13%)
Query: 412 ITQVTTVQQLSIQPIL-DGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAV 470
I Q +++ + +G + L+ T SGKTL I ++ ++ K +Y
Sbjct: 21 IESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILTQGGKA-----VY-- 73
Query: 471 IILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLD 530
I+P + LA + + F + V TG S+ + K I++AT + D
Sbjct: 74 -IVPLKALAEEKFQEFQDW-EKIGLRVAM-ATGD--YDSKDEWLGKY-DIIIATAEK-FD 126
Query: 531 HCKHTETLKFSKVEHLVLDEADRILDQGYER-DIAEFLEILKKQKPQFQSILLSATLTPA 589
+ V+ LV DE I + +R E IL + Q I LSAT+
Sbjct: 127 SLLRHGSSWIKDVKILVADEIHLIGSR--DRGATLE--VILAHMLGKAQIIGLSATI-GN 181
Query: 590 VQRLAG------------------MTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHF-- 629
+ LA S D ++ + LV D++++
Sbjct: 182 PEELAEWLNAELIVSDWRPVKLRRGVFYQGFVTWEDGSIDRFSSWEELVY-DAIRKKKGA 240
Query: 630 -IVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFF 688
I + + +A + K +++ E + L +A + E L+ + +AF
Sbjct: 241 LIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFH 300
Query: 689 KLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLP--------LVDWIVQYTAPSS 740
H + + ER V + FR ++ T + G++ P + +
Sbjct: 301 --HAGLGRDERVLVEENFRKGIIKAVVATPTLSAGINTPAFRVIIRDIWRYSDFGMERIP 358
Query: 741 STDYVHRVGRTARVGHEGSSLLFLIPSEVKLVEELQN 777
+ +GR R ++ ++ + E + +
Sbjct: 359 IIEVHQMLGRAGRPKYDEVGEGIIVSTSDDPREVMNH 395
|
| >2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A* Length = 720 | Back alignment and structure |
|---|
Score = 50.6 bits (121), Expect = 2e-06
Identities = 43/177 (24%), Positives = 71/177 (40%), Gaps = 20/177 (11%)
Query: 3 ITQVTTVQQLSIQPIL-DGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAV 61
I Q +++ + +G + L+ T SGKTL I ++ ++ K +Y
Sbjct: 21 IESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILTQGGKA-----VY-- 73
Query: 62 IILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLD 121
I+P + LA + + F + V TG S+ + K I++AT + D
Sbjct: 74 -IVPLKALAEEKFQEFQDW-EKIGLRVAM-ATGD--YDSKDEWLGKY-DIIIATAEK-FD 126
Query: 122 HCKHTETLKFSKVEHLVLDEADRILDQGYER-DIAEFLEILKKQKPQFQSILLSATL 177
+ V+ LV DE I + +R E IL + Q I LSAT+
Sbjct: 127 SLLRHGSSWIKDVKILVADEIHLIGSR--DRGATLE--VILAHMLGKAQIIGLSATI 179
|
| >4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos} Length = 797 | Back alignment and structure |
|---|
Score = 63.8 bits (154), Expect = 2e-10
Identities = 27/158 (17%), Positives = 57/158 (36%), Gaps = 16/158 (10%)
Query: 653 NEDEESKMLVFMATQDMADYHTELL---STVLGENIAFFKLHGS------MSQSERTEVF 703
+ +++ L+F T+ + + + + G M+ + V
Sbjct: 627 RYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVL 686
Query: 704 KTFRS-VKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLL 762
F++ + +LI T VA G+D+ + +V Y + T + GR R GS +
Sbjct: 687 DAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GR--AAGSKCI 743
Query: 763 FLIPSEVKLVEELQNRRIRIEEIKLKDCLQNLLSVKME 800
+ + E NR +E + ++ + E
Sbjct: 744 LVTSKTEVVENEKCNRY---KEEMMNKAVEKIQKWDEE 778
|
| >4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos} Length = 797 | Back alignment and structure |
|---|
Score = 63.5 bits (153), Expect = 3e-10
Identities = 30/191 (15%), Positives = 59/191 (30%), Gaps = 7/191 (3%)
Query: 10 QQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTREL 69
Q QP ++G + L+ + TGSGKT + Q M K V + +
Sbjct: 253 QIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAK----VVFLATKVPV 308
Query: 70 ALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETL 129
Q +F + + V ++G ++ + I+V TP L++ +
Sbjct: 309 YEQQKNVFKHHFERQGYSVQG-ISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLT 367
Query: 130 KFSKVEHLVLDEADRILDQGYERDIAEFL--EILKKQKPQFQSILLSATLTPATCWCKHT 187
S ++ DE + + Q + L+A++
Sbjct: 368 SLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQKFNSASQLPQILGLTASVGVGNAKNIEE 427
Query: 188 ETLKFSKVEHL 198
+
Sbjct: 428 TIEHICSLCSY 438
|
| >4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos} Length = 797 | Back alignment and structure |
|---|
Score = 62.7 bits (151), Expect = 4e-10
Identities = 59/436 (13%), Positives = 127/436 (29%), Gaps = 40/436 (9%)
Query: 201 DEADRILDQGYERDIA---EFLEILKKQKPQ-----FQSVLLSATLTPAVQRLAGMTLQN 252
+ +RI + FL+ + + + + +L+A T + +
Sbjct: 39 ELRERIRKEEERGVSGAAALFLDAVLQLEARGWFRGMLDAMLAAGYTGLAEAIENWDFSK 98
Query: 253 PIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKM 312
+ ++H + V P L + C E EE +
Sbjct: 99 L------EKLELHRQLLKRIEAT----MLEVDPVALIPY------ISTCLIDRECEEIQQ 142
Query: 313 LVFMATQDMADYHTELLSTKKKIKK------LKEYNIDPDNYEIPKKTEVKSGPISSLFQ 366
+ + A T+L+ + K L+ Y + +++ +
Sbjct: 143 I--SENRSKAAGITKLIECLCRSDKEHWPKSLQLALDTTGYYRASELWDIREDNAKDVDS 200
Query: 367 NNPDIPNVPTRRLKPVSEALFAPTSYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPI 426
D SE + E G + + Q QP
Sbjct: 201 EMTDASEDCLEASMTYSEEAEPDDNLSENLGSAAEGIGKPPPVYETKKARSYQIELAQPA 260
Query: 427 LDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIF 486
++G + L+ + TGSGKT + Q M K V + + Q +F
Sbjct: 261 INGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAK----VVFLATKVPVYEQQKNVF 316
Query: 487 TKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHL 546
+ + V ++G ++ + I+V TP L++ + S +
Sbjct: 317 KHHFERQGYSVQG-ISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLM 375
Query: 547 VLDEADRILDQGYERDIAEFL--EILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQI 604
+ DE + + Q + L+A++ + T+++ +
Sbjct: 376 IFDECHNTTGNHPYNVLMTRYLEQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSL 435
Query: 605 -DAADSTDIHNTTDSL 619
D I +++
Sbjct: 436 CSYLDIQAISTVRENI 451
|
| >2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A* Length = 696 | Back alignment and structure |
|---|
Score = 63.5 bits (153), Expect = 2e-10
Identities = 30/180 (16%), Positives = 65/180 (36%), Gaps = 6/180 (3%)
Query: 10 QQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTREL 69
Q P + G + ++ + TG GKT ++ I + + P+ + ++ +
Sbjct: 18 QLELALPAMKGKNTIICAPTGCGKTFV-SLLICEHHLKKFPQGQKGKVVFFA---NQIPV 73
Query: 70 ALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETL 129
Q +F+K + + V ++G +I + I++ TP L+++ K
Sbjct: 74 YEQNKSVFSKYFERHGYRVTG-ISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIP 132
Query: 130 KFSKVEHLVLDEADRILDQGYERDIA-EFLEILKKQKPQFQSILLSATLTPATCWCKHTE 188
S ++ DE Q I +L+ ++ T + K T+
Sbjct: 133 SLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKTTD 192
|
| >2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A* Length = 696 | Back alignment and structure |
|---|
Score = 61.9 bits (149), Expect = 6e-10
Identities = 38/219 (17%), Positives = 82/219 (37%), Gaps = 25/219 (11%)
Query: 653 NEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFK-----------LHGSMSQSERTE 701
+ + E+ ++F+ T+ + D + ++F K + M+ +
Sbjct: 394 HLNPETITILFVKTRALVDALKNWIEGN--PKLSFLKPGILTGRGKTNQNTGMTLPAQKC 451
Query: 702 VFKTFR-SVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSS 760
+ F+ S +LI T VA G+D+ + ++ Y + + GR R GS
Sbjct: 452 ILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GR--ARGSK 508
Query: 761 LLFLIPSEVKLVEELQNRRIRIEEIKLKDCLQNLLSVKMEGDLSRLADGNVETAATALQM 820
L + + +E N +E + D + L + + + R +++T ++
Sbjct: 509 CFLLTSNAGVIEKEQINMY---KEKMMNDSILRLQT--WDEAVFREKILHIQTHEKFIRD 563
Query: 821 SFESAVLQQKILHTSACKGYTSWVRFYASYSKDLRHIFN 859
S E + + K + A Y+ D+R I +
Sbjct: 564 SQEK---PKPVPDKENKKLLCRKCKALACYTADVRVIED 599
|
| >2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A* Length = 696 | Back alignment and structure |
|---|
Score = 61.5 bits (148), Expect = 1e-09
Identities = 28/171 (16%), Positives = 62/171 (36%), Gaps = 6/171 (3%)
Query: 419 QQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTREL 478
Q P + G + ++ + TG GKT ++ I + + P+ + ++ +
Sbjct: 18 QLELALPAMKGKNTIICAPTGCGKTFV-SLLICEHHLKKFPQGQKGKVVFFA---NQIPV 73
Query: 479 ALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETL 538
Q +F+K + + V ++G +I + I++ TP L+++ K
Sbjct: 74 YEQNKSVFSKYFERHGYRVTG-ISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIP 132
Query: 539 KFSKVEHLVLDEADRILDQGYERDIA-EFLEILKKQKPQFQSILLSATLTP 588
S ++ DE Q I +L+ ++ T +
Sbjct: 133 SLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASV 183
|
| >3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens} Length = 216 | Back alignment and structure |
|---|
Score = 59.8 bits (145), Expect = 4e-10
Identities = 35/185 (18%), Positives = 75/185 (40%), Gaps = 14/185 (7%)
Query: 419 QQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTREL 478
Q QP L+G ++++ TGSGKT A+ I + + + K + + G ++++ L
Sbjct: 38 QMEVAQPALEGKNIIICLPTGSGKTRV-AVYIAKDHLDKKKK-ASEPGK-VIVLVNKVLL 94
Query: 479 ALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTET- 537
Q + + V L+G ++K + K I+++T L + + E
Sbjct: 95 VEQLFRKEFQPFLKKWYRVIG-LSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENG 153
Query: 538 ----LKFSKVEHLVLDEADRILDQG-YERDIAEFLEILKKQKPQFQSILLSATLTPAVQR 592
++ S +++DE + Y + +L QK + + + +
Sbjct: 154 EDAGVQLSDFSLIIIDECHHTNKEAVYNNIMRHYLM----QKLKNNRLKKENKPVIPLPQ 209
Query: 593 LAGMT 597
+ G+T
Sbjct: 210 ILGLT 214
|
| >3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens} Length = 216 | Back alignment and structure |
|---|
Score = 56.0 bits (135), Expect = 9e-09
Identities = 36/183 (19%), Positives = 73/183 (39%), Gaps = 20/183 (10%)
Query: 10 QQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTREL 69
Q QP L+G ++++ TGSGKT A+ I + + + K + + G ++++ L
Sbjct: 38 QMEVAQPALEGKNIIICLPTGSGKTRV-AVYIAKDHLDKKKK-ASEPGK-VIVLVNKVLL 94
Query: 70 ALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTET- 128
Q + + V L+G ++K + K I+++T L + + E
Sbjct: 95 VEQLFRKEFQPFLKKWYRVIG-LSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENG 153
Query: 129 ----LKFSKVEHLVLDEADRILDQG-YERDIAEFLEILKKQKPQFQS---------IL-L 173
++ S +++DE + Y + +L K + IL L
Sbjct: 154 EDAGVQLSDFSLIIIDECHHTNKEAVYNNIMRHYLMQKLKNNRLKKENKPVIPLPQILGL 213
Query: 174 SAT 176
+A+
Sbjct: 214 TAS 216
|
| >2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A Length = 702 | Back alignment and structure |
|---|
Score = 57.9 bits (140), Expect = 1e-08
Identities = 68/408 (16%), Positives = 129/408 (31%), Gaps = 74/408 (18%)
Query: 411 NITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAV 470
I ++ Q +++ + G ++L+ T +GKTL + ++++ + K ++
Sbjct: 22 GIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIK-----GGK----SL 72
Query: 471 IILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLD 530
++P R LA + E F K + + TG +S + I+V T + D
Sbjct: 73 YVVPLRALAGEKYESFKKW-EKIGLRI-GISTGD--YESRDEHLGDC-DIIVTTSEK-AD 126
Query: 531 HCKHTETLKFSKVEHLVLDE------ADRILDQGY--ERDIAEFLEILKKQKPQFQSILL 582
V LV+DE R G E + + + + + I L
Sbjct: 127 SLIRNRASWIKAVSCLVVDEIHLLDSEKR----GATLEILVTKMRRM--NKALRV--IGL 178
Query: 583 SATLTPAVQRLA------------------------GMTLQNPIQIDAADSTDIHNTTDS 618
SAT P V +A G + +
Sbjct: 179 SATA-PNVTEIAEWLDADYYVSDWRPVPLVEGVLCEGTLELFDGAFSTSRRVKFEELVEE 237
Query: 619 LVIPDSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLS 678
V + + + A + E+E + + + L+
Sbjct: 238 CVAEN--GGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMS---RKLA 292
Query: 679 TVLGENIAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLP--LVDWIVQYT 736
+ + AF H + +R V FR V++ T A G++LP V IV+
Sbjct: 293 ECVRKGAAF--HHAGLLNGQRRVVEDAFRRGNIKVVVATPTLAAGVNLPARRV--IVRSL 348
Query: 737 -------APSSSTDYVHRVGRTARVGHEGSSLLFLIPSEVKLVEELQN 777
++Y GR R G + +I + ++
Sbjct: 349 YRFDGYSKRIKVSEYKQMAGRAGRPGMDERGEAIIIVGKRDREIAVKR 396
|
| >2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A Length = 702 | Back alignment and structure |
|---|
Score = 42.1 bits (99), Expect = 8e-04
Identities = 37/184 (20%), Positives = 70/184 (38%), Gaps = 31/184 (16%)
Query: 2 NITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAV 61
I ++ Q +++ + G ++L+ T +GKTL + ++++ + K ++
Sbjct: 22 GIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIK-----GGK----SL 72
Query: 62 IILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLD 121
++P R LA + E F K + + TG +S + I+V T + D
Sbjct: 73 YVVPLRALAGEKYESFKKW-EKIGLRI-GISTGD--YESRDEHLGDC-DIIVTTSEK-AD 126
Query: 122 HCKHTETLKFSKVEHLVLDE------ADRILDQGY--ERDIAEFLEILKKQKPQFQSILL 173
V LV+DE R G E + + + + + I L
Sbjct: 127 SLIRNRASWIKAVSCLVVDEIHLLDSEKR----GATLEILVTKMRRM--NKALRV--IGL 178
Query: 174 SATL 177
SAT
Sbjct: 179 SATA 182
|
| >3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12} Length = 968 | Back alignment and structure |
|---|
Score = 50.5 bits (120), Expect = 3e-06
Identities = 26/106 (24%), Positives = 42/106 (39%), Gaps = 4/106 (3%)
Query: 652 VNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSVKS 711
+ K+LV A A ++L G A F H MS ER F +
Sbjct: 498 LTSHRSQKVLVICAKAATALQLEQVLREREGIRAAVF--HEGMSIIERDRAAAWFAEEDT 555
Query: 712 GV--LICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVG 755
G L+C+++ + G + +V + P + R+GR R+G
Sbjct: 556 GAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRIG 601
|
| >2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus} Length = 715 | Back alignment and structure |
|---|
Score = 49.7 bits (119), Expect = 3e-06
Identities = 78/432 (18%), Positives = 158/432 (36%), Gaps = 75/432 (17%)
Query: 411 NITQVTTVQQLSIQPILDGGD-VLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYA 469
I ++ Q +++ L G+ +L+ S TGSGKTL + II L + K IY
Sbjct: 27 GIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLKNGGKA-----IY- 80
Query: 470 VIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLL 529
+ P R L + F + +G ++ A ++ I++ T + L
Sbjct: 81 --VTPLRALTNEKYLTFKDWELIGFKVAM--TSGD--YDTDDAWLKNY-DIIITTYEK-L 132
Query: 530 DHCKHTETLKFSKVEHLVLDE------ADRILDQGYERDIAEFLEILKKQKPQFQSILLS 583
D ++V + VLDE +R G + E + ++ ++ + LS
Sbjct: 133 DSLWRHRPEWLNEVNYFVLDELHYLNDPER----GP---VVESV-TIRAKRRNL--LALS 182
Query: 584 ATL---------------------TPAVQRLAGMTLQNPI-QIDAADSTDIHNTTDSLVI 621
AT+ P ++ + + + D+T D +I
Sbjct: 183 ATISNYKQIAKWLGAEPVATNWRPVPLIEGVIYPERKKKEYNVIFKDNTTKKVHGDDAII 242
Query: 622 PDSLKQHF-----IV-TPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTE 675
+L +V + + A I V+ DE + + D+ + ++
Sbjct: 243 AYTLDSLSKNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSD 302
Query: 676 L---LSTVLGENIAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLP--LV- 729
L +++ + +A+ H +S++ R + + FR K V++ T A G++LP V
Sbjct: 303 EKELLKSLISKGVAY--HHAGLSKALRDLIEEGFRQRKIKVIVATPTLAAGVNLPARTVI 360
Query: 730 --------DWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPSEVKLVEELQNRRIR 781
I Y +Y GR R G + ++ + + V+ + + +
Sbjct: 361 IGDIYRFNKKIAGYYDEIPIMEYKQMSGRAGRPGFDQIGESIVVVRDKEDVDRVFKKYVL 420
Query: 782 IEEIKLKDCLQN 793
+ ++ L +
Sbjct: 421 SDVEPIESKLGS 432
|
| >3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4a92_A* 1cu1_A 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A 8ohm_A 2f55_A 1jr6_A 1onb_A Length = 666 | Back alignment and structure |
|---|
Score = 49.2 bits (117), Expect = 6e-06
Identities = 57/373 (15%), Positives = 96/373 (25%), Gaps = 102/373 (27%)
Query: 408 EGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGI 467
E + V T + + TGSGK+ + K+
Sbjct: 211 ETTMRSPVFTDNSSPPAVPQSFQVAHLHAPTGSGKSTK----VPAAYAAQGYKV------ 260
Query: 468 YAVIIL-PTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPG 526
++L P+ L + K+ I P+ TG I G + +T G
Sbjct: 261 ---LVLNPSVAATLG---FGAYMSKAHG-IDPNIRTGVR-------TITTGAPVTYSTYG 306
Query: 527 RLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERD---IAEFLEILKKQKPQFQSILLS 583
+ L + ++ DE D I +L + + +++
Sbjct: 307 KFLAD----GGCSGGAYDIIICDECH-------STDSTTILGIGTVLDQAETAGARLVVL 355
Query: 584 ATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALAS 643
AT TP H + L
Sbjct: 356 ATATPPGSVTV--------------------------------PHPNIEEVALSNTGEIP 383
Query: 644 FILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVF 703
F GK + + L+F ++ D EL + + G I + + S
Sbjct: 384 F-YGKAIPIEAIRGGRHLIFCHSKKKCD---ELAAKLSGLGINAVAYYRGLDVSV----- 434
Query: 704 KTFRSVKSGVLICTDVAARGL--------------------DLPLVDWIVQYTAPSSSTD 743
++ V++ TD G L I T P +
Sbjct: 435 --IPTIGDVVVVATDALMTGYTGDFDSVIDCNTCVTQTVDFSLDPTFTIETTTVPQDAVS 492
Query: 744 YVHRVGRTARVGH 756
R GRT R
Sbjct: 493 RSQRRGRTGRGRR 505
|
| >1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B* Length = 1054 | Back alignment and structure |
|---|
Score = 46.6 bits (111), Expect = 4e-05
Identities = 71/420 (16%), Positives = 141/420 (33%), Gaps = 102/420 (24%)
Query: 438 TGSGKT---LAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFT 494
TG GKT LA ++ + K G +I PT L +Q E K +
Sbjct: 80 TGVGKTSFGLAMSLFLALK------------GKRCYVIFPTSLLVIQAAETIRKYAEKAG 127
Query: 495 WIVPSWLTG--GEKMKSEKARIRKGI---SILVATPGRLLDHCKHTETLKFSKVEHLVLD 549
+ + G K EK + + I++ T L KH L + + +D
Sbjct: 128 VGTENLIGYYHGRIPKREKENFMQNLRNFKIVITTTQFLS---KHYRELG--HFDFIFVD 182
Query: 550 EADRILDQGYERDIAEFLEIL----------KKQKPQFQSILLSATLTPAV-----QRLA 594
+ D IL +++ + L +L + + ++ +AT ++L
Sbjct: 183 DVDAILKAS--KNVDKLLHLLGFHYDLKTKSWVGEARGCLMVSTATAKKGKKAELFRQLL 240
Query: 595 GMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALASFILGKCQNVNE 654
+ + + N D V +S+ L ++ LG
Sbjct: 241 NFDIGSS-------RITVRNVEDVAVNDESIST----------LSSILE-KLGT------ 276
Query: 655 DEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSVKSGVL 714
+++ T + A+ E L K + + + ++ F + L
Sbjct: 277 ----GGIIYARTGEEAEEIYESLK---------NKFRIGIVTATKKGDYEKFVEGEIDHL 323
Query: 715 ICT----DVAARGLDLPLVDWIVQYT----APSSSTDYVHRVGRTARVGHEGSSLLFLIP 766
I T RGLDLP +++ PS RV + ++ L+
Sbjct: 324 IGTAHYYGTLVRGLDLP---ERIRFAVFVGCPS------FRV-TIEDIDSLSPQMVKLLA 373
Query: 767 SEVKLVEELQNRRIRIEEI--KLKDCLQNLLS-VKMEGDLSRLADGNVET--AATALQMS 821
+ V+E++ +E ++++ L+ ++ + + + +G V T +Q S
Sbjct: 374 YLYRNVDEIERLLPAVERHIDEVREILKKVMGKERPQAKDVVVREGEVIFPDLRTYIQGS 433
|
| >2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A Length = 451 | Back alignment and structure |
|---|
Score = 44.5 bits (105), Expect = 1e-04
Identities = 39/303 (12%), Positives = 82/303 (27%), Gaps = 78/303 (25%)
Query: 428 DGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIIL-PTRELALQTLEIF 486
++ G+GKT I+ + + +IL PTR +A E+
Sbjct: 18 KKRLTIMDLHPGAGKTKR----ILPSIVREALLRRLR-----TLILAPTRVVA---AEME 65
Query: 487 TKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHL 546
L L + + K+ + + + + +
Sbjct: 66 EALRG---------LPIRYQTPAVKSDHTGREIVDLMCHATFTTRLLSSTRV--PNYNLI 114
Query: 547 VLDEA-----DRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNP 601
V+DEA + +GY E E I ++AT G T P
Sbjct: 115 VMDEAHFTDPCSVAARGYISTRVEMGEAAA--------IFMTAT-------PPGSTDPFP 159
Query: 602 IQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKML 661
+ + + + + + D + K +
Sbjct: 160 Q------------------------SNSPIEDIEREIPERS---WNTGFDWITDYQGKTV 192
Query: 662 VFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAA 721
F+ + + ++ + + +L +E + T V+ TD++
Sbjct: 193 WFVPSIKAGN---DIANCLRKSGKRVIQLSRKTFDTEYPKTKLTDWDF---VV-TTDISE 245
Query: 722 RGL 724
G
Sbjct: 246 MGA 248
|
| >1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A* Length = 440 | Back alignment and structure |
|---|
Score = 43.3 bits (102), Expect = 3e-04
Identities = 37/297 (12%), Positives = 79/297 (26%), Gaps = 66/297 (22%)
Query: 428 DGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFT 487
G ++ G+GKT + I+ + R + +++ PTR + +
Sbjct: 7 KGMTTVLDFHPGAGKTRRFLPQILAECARRRLRT--------LVLAPTRVVLSE------ 52
Query: 488 KLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLV 547
+ ++F + + T + I L + E ++
Sbjct: 53 -MKEAFHGLDVKFHTQAFSAHGSGREV-----IDAMCHATLTYRMLEPTRV--VNWEVII 104
Query: 548 LDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAA 607
+DEA LD A + + + +IL++AT N D
Sbjct: 105 MDEAH-FLD--PASIAARGWAAHRARANESATILMTATPP---GTSDEFPHSNGEIEDVQ 158
Query: 608 DSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQ 667
+I ++ F+ +
Sbjct: 159 TDIPSEPWNT--------GHDWI-----------------------LADKRPTAWFLPSI 187
Query: 668 DMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGL 724
A+ L + L+ + E + + ++ TD+A G
Sbjct: 188 RAANVMAASLR---KAGKSVVVLNRKTFEREYPTIKQKKPD----FILATDIAEMGA 237
|
| >2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4} Length = 510 | Back alignment and structure |
|---|
Score = 41.8 bits (97), Expect = 9e-04
Identities = 45/375 (12%), Positives = 106/375 (28%), Gaps = 30/375 (8%)
Query: 392 YEEFPGIHPFMKKNLNEGMNIT-QVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPI 450
++ K N + Q+ ++ L ++ T +G++L A+
Sbjct: 90 ELSRKDFDEWLSKLEIYSGNKRIEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLA 149
Query: 451 IQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSE 510
L+ KI +II+PT L Q + F ++ G K
Sbjct: 150 RYYLENYEGKI--------LIIVPTTALTTQMADDFVDYRLFSHAMIKKIGGGASKDDKY 201
Query: 511 KARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQG----YERDIAEF 566
K + + + + + I+ ++ ++
Sbjct: 202 KNDAPVVVGTWQTVVKQPKEWFSQFGMMMNDECHLATGKSISSIISGLNNCMFKFGLSGS 261
Query: 567 LEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQI---DAADSTDIHNTTDSLVIPD 623
L K Q+ + +L ++I + +
Sbjct: 262 LRDGKANIMQYVGMFGEIFKPVTTSKLMEDGQVTELKINSIFLRYPDEFTTKLKGKTYQE 321
Query: 624 SLKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVL-G 682
+K ++ + LA + K +N V H + + ++
Sbjct: 322 EIKIITGLSKRNKWIAKLAIKLAQKDENA--------FVMFKHVS----HGKAIFDLIKN 369
Query: 683 ENIAFFKLHGSMSQSERTEVFKTFRSVKSGVLICT-DVAARGLDLPLVDWIVQYTAPSSS 741
E + + G + R + + K +++ + V + G+ + + +V S
Sbjct: 370 EYDKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVFSTGISVKNLHHVVLAHGVKSK 429
Query: 742 TDYVHRVGRTARVGH 756
+ +GR R
Sbjct: 430 IIVLQTIGRVLRKHG 444
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 930 | |||
| 4f92_B | 1724 | U5 small nuclear ribonucleoprotein 200 kDa helica; | 100.0 | |
| 2db3_A | 434 | ATP-dependent RNA helicase VASA; DEAD-BOX, protein | 100.0 | |
| 3sqw_A | 579 | ATP-dependent RNA helicase MSS116, mitochondrial; | 100.0 | |
| 3i5x_A | 563 | ATP-dependent RNA helicase MSS116; protein-RNA com | 100.0 | |
| 2i4i_A | 417 | ATP-dependent RNA helicase DDX3X; DEAD, structural | 100.0 | |
| 2j0s_A | 410 | ATP-dependent RNA helicase DDX48; mRNA processing, | 100.0 | |
| 1s2m_A | 400 | Putative ATP-dependent RNA helicase DHH1; ATP-bind | 100.0 | |
| 3fht_A | 412 | ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box | 100.0 | |
| 1xti_A | 391 | Probable ATP-dependent RNA helicase P47; alpha-bet | 100.0 | |
| 3eiq_A | 414 | Eukaryotic initiation factor 4A-I; PDCD4, anti-onc | 100.0 | |
| 3fmp_B | 479 | ATP-dependent RNA helicase DDX19B; nuclear porin, | 100.0 | |
| 1hv8_A | 367 | Putative ATP-dependent RNA helicase MJ0669; RNA-bi | 100.0 | |
| 3pey_A | 395 | ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, A | 100.0 | |
| 1fuu_A | 394 | Yeast initiation factor 4A; IF4A, helicase, DEAD-b | 100.0 | |
| 2v1x_A | 591 | ATP-dependent DNA helicase Q1; DNA strand annealin | 100.0 | |
| 2z0m_A | 337 | 337AA long hypothetical ATP-dependent RNA helicase | 100.0 | |
| 1oyw_A | 523 | RECQ helicase, ATP-dependent DNA helicase; winged | 100.0 | |
| 1tf5_A | 844 | Preprotein translocase SECA subunit; ATPase, helic | 100.0 | |
| 3oiy_A | 414 | Reverse gyrase helicase domain; topoisomerase, DNA | 100.0 | |
| 3fho_A | 508 | ATP-dependent RNA helicase DBP5; mRNA export, ATPa | 100.0 | |
| 1nkt_A | 922 | Preprotein translocase SECA 1 subunit; preprotein | 100.0 | |
| 2fsf_A | 853 | Preprotein translocase SECA subunit; ATPase, DNA-R | 100.0 | |
| 3l9o_A | 1108 | ATP-dependent RNA helicase DOB1; REC-A fold, winge | 100.0 | |
| 2va8_A | 715 | SSO2462, SKI2-type helicase; hydrolase, DNA repair | 100.0 | |
| 2zj8_A | 720 | DNA helicase, putative SKI2-type helicase; RECA fo | 100.0 | |
| 4ddu_A | 1104 | Reverse gyrase; topoisomerase, DNA supercoiling, a | 100.0 | |
| 2p6r_A | 702 | Afuhel308 helicase; protein-DNA complex, SF2 helic | 100.0 | |
| 4f92_B | 1724 | U5 small nuclear ribonucleoprotein 200 kDa helica; | 100.0 | |
| 4a2p_A | 556 | RIG-I, retinoic acid inducible protein I; hydrolas | 100.0 | |
| 3tbk_A | 555 | RIG-I helicase domain; DECH helicase, ATP binding, | 100.0 | |
| 2xgj_A | 1010 | ATP-dependent RNA helicase DOB1; hydrolase-RNA com | 100.0 | |
| 4a2q_A | 797 | RIG-I, retinoic acid inducible protein I; hydrolas | 100.0 | |
| 1gku_B | 1054 | Reverse gyrase, TOP-RG; topoisomerase, DNA superco | 100.0 | |
| 2ykg_A | 696 | Probable ATP-dependent RNA helicase DDX58; hydrola | 100.0 | |
| 2whx_A | 618 | Serine protease/ntpase/helicase NS3; transcription | 100.0 | |
| 4a2w_A | 936 | RIG-I, retinoic acid inducible protein I; hydrolas | 100.0 | |
| 1gm5_A | 780 | RECG; helicase, replication restart; HET: DNA ADP; | 100.0 | |
| 4a4z_A | 997 | Antiviral helicase SKI2; hydrolase, ATPase, mRNA d | 100.0 | |
| 2jlq_A | 451 | Serine protease subunit NS3; ribonucleoprotein, nu | 100.0 | |
| 1yks_A | 440 | Genome polyprotein [contains: flavivirin protease | 100.0 | |
| 1wp9_A | 494 | ATP-dependent RNA helicase, putative; ATPase, DNA | 100.0 | |
| 2eyq_A | 1151 | TRCF, transcription-repair coupling factor; MFD, S | 100.0 | |
| 4gl2_A | 699 | Interferon-induced helicase C domain-containing P; | 100.0 | |
| 2z83_A | 459 | Helicase/nucleoside triphosphatase; hydrolase, mem | 100.0 | |
| 2wv9_A | 673 | Flavivirin protease NS2B regulatory subunit, FLAV | 100.0 | |
| 2xau_A | 773 | PRE-mRNA-splicing factor ATP-dependent RNA helica; | 100.0 | |
| 2oca_A | 510 | DAR protein, ATP-dependent DNA helicase UVSW; ATP- | 100.0 | |
| 3jux_A | 822 | Protein translocase subunit SECA; protein transloc | 100.0 | |
| 3o8b_A | 666 | HCV NS3 protease/helicase; ntpase, RNA, translocat | 100.0 | |
| 2fwr_A | 472 | DNA repair protein RAD25; DNA unwinding, XPB, DNA | 100.0 | |
| 3rc3_A | 677 | ATP-dependent RNA helicase SUPV3L1, mitochondrial; | 100.0 | |
| 2v6i_A | 431 | RNA helicase; membrane, hydrolase, transmembrane, | 100.0 | |
| 3fmo_B | 300 | ATP-dependent RNA helicase DDX19B; nuclear porin, | 100.0 | |
| 3fe2_A | 242 | Probable ATP-dependent RNA helicase DDX5; DEAD, AD | 100.0 | |
| 3ber_A | 249 | Probable ATP-dependent RNA helicase DDX47; DEAD, A | 100.0 | |
| 3h1t_A | 590 | Type I site-specific restriction-modification syst | 100.0 | |
| 3iuy_A | 228 | Probable ATP-dependent RNA helicase DDX53; REC-A-l | 100.0 | |
| 1vec_A | 206 | ATP-dependent RNA helicase P54; DEAD-box protein, | 100.0 | |
| 3ly5_A | 262 | ATP-dependent RNA helicase DDX18; alpha-beta, stru | 100.0 | |
| 2db3_A | 434 | ATP-dependent RNA helicase VASA; DEAD-BOX, protein | 100.0 | |
| 2oxc_A | 230 | Probable ATP-dependent RNA helicase DDX20; DEAD, s | 100.0 | |
| 2ipc_A | 997 | Preprotein translocase SECA subunit; nucleotide bi | 100.0 | |
| 1q0u_A | 219 | Bstdead; DEAD protein, RNA binding protein; 1.85A | 100.0 | |
| 1wrb_A | 253 | DJVLGB; RNA helicase, DEAD BOX, VASA, structural g | 99.98 | |
| 2pl3_A | 236 | Probable ATP-dependent RNA helicase DDX10; DEAD, s | 99.98 | |
| 3bor_A | 237 | Human initiation factor 4A-II; translation initiat | 99.98 | |
| 2gxq_A | 207 | Heat resistant RNA dependent ATPase; RNA helicase, | 99.97 | |
| 1t6n_A | 220 | Probable ATP-dependent RNA helicase; RECA-like fol | 99.97 | |
| 1qde_A | 224 | EIF4A, translation initiation factor 4A; DEAD box | 99.97 | |
| 3dmq_A | 968 | RNA polymerase-associated protein RAPA; SWF2/SNF2, | 99.97 | |
| 3dkp_A | 245 | Probable ATP-dependent RNA helicase DDX52; DEAD, A | 99.97 | |
| 2i4i_A | 417 | ATP-dependent RNA helicase DDX3X; DEAD, structural | 99.97 | |
| 3fe2_A | 242 | Probable ATP-dependent RNA helicase DDX5; DEAD, AD | 99.96 | |
| 1z63_A | 500 | Helicase of the SNF2/RAD54 hamily; protein-DNA com | 99.96 | |
| 2j0s_A | 410 | ATP-dependent RNA helicase DDX48; mRNA processing, | 99.96 | |
| 2w00_A | 1038 | HSDR, R.ECOR124I; ATP-binding, DNA-binding, restri | 99.96 | |
| 3iuy_A | 228 | Probable ATP-dependent RNA helicase DDX53; REC-A-l | 99.96 | |
| 3fmo_B | 300 | ATP-dependent RNA helicase DDX19B; nuclear porin, | 99.96 | |
| 3ber_A | 249 | Probable ATP-dependent RNA helicase DDX47; DEAD, A | 99.96 | |
| 3ly5_A | 262 | ATP-dependent RNA helicase DDX18; alpha-beta, stru | 99.96 | |
| 3sqw_A | 579 | ATP-dependent RNA helicase MSS116, mitochondrial; | 99.96 | |
| 3eiq_A | 414 | Eukaryotic initiation factor 4A-I; PDCD4, anti-onc | 99.96 | |
| 1vec_A | 206 | ATP-dependent RNA helicase P54; DEAD-box protein, | 99.96 | |
| 1xti_A | 391 | Probable ATP-dependent RNA helicase P47; alpha-bet | 99.96 | |
| 1s2m_A | 400 | Putative ATP-dependent RNA helicase DHH1; ATP-bind | 99.95 | |
| 1wrb_A | 253 | DJVLGB; RNA helicase, DEAD BOX, VASA, structural g | 99.95 | |
| 3i5x_A | 563 | ATP-dependent RNA helicase MSS116; protein-RNA com | 99.95 | |
| 2oxc_A | 230 | Probable ATP-dependent RNA helicase DDX20; DEAD, s | 99.95 | |
| 3fht_A | 412 | ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box | 99.95 | |
| 3fmp_B | 479 | ATP-dependent RNA helicase DDX19B; nuclear porin, | 99.95 | |
| 2pl3_A | 236 | Probable ATP-dependent RNA helicase DDX10; DEAD, s | 99.95 | |
| 1q0u_A | 219 | Bstdead; DEAD protein, RNA binding protein; 1.85A | 99.95 | |
| 3bor_A | 237 | Human initiation factor 4A-II; translation initiat | 99.95 | |
| 1fuu_A | 394 | Yeast initiation factor 4A; IF4A, helicase, DEAD-b | 99.95 | |
| 1z3i_X | 644 | Similar to RAD54-like; recombination ATPase helica | 99.95 | |
| 2gxq_A | 207 | Heat resistant RNA dependent ATPase; RNA helicase, | 99.94 | |
| 1qde_A | 224 | EIF4A, translation initiation factor 4A; DEAD box | 99.94 | |
| 1c4o_A | 664 | DNA nucleotide excision repair enzyme UVRB; uvrabc | 99.94 | |
| 1hv8_A | 367 | Putative ATP-dependent RNA helicase MJ0669; RNA-bi | 99.94 | |
| 1t6n_A | 220 | Probable ATP-dependent RNA helicase; RECA-like fol | 99.94 | |
| 3dkp_A | 245 | Probable ATP-dependent RNA helicase DDX52; DEAD, A | 99.94 | |
| 3pey_A | 395 | ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, A | 99.94 | |
| 3mwy_W | 800 | Chromo domain-containing protein 1; SWI2/SNF2 ATPa | 99.94 | |
| 3oiy_A | 414 | Reverse gyrase helicase domain; topoisomerase, DNA | 99.94 | |
| 2z0m_A | 337 | 337AA long hypothetical ATP-dependent RNA helicase | 99.94 | |
| 2d7d_A | 661 | Uvrabc system protein B; helicase, protein-DNA-ADP | 99.93 | |
| 4ddu_A | 1104 | Reverse gyrase; topoisomerase, DNA supercoiling, a | 99.93 | |
| 2ykg_A | 696 | Probable ATP-dependent RNA helicase DDX58; hydrola | 99.93 | |
| 3fho_A | 508 | ATP-dependent RNA helicase DBP5; mRNA export, ATPa | 99.93 | |
| 1oyw_A | 523 | RECQ helicase, ATP-dependent DNA helicase; winged | 99.92 | |
| 2v1x_A | 591 | ATP-dependent DNA helicase Q1; DNA strand annealin | 99.92 | |
| 2hjv_A | 163 | ATP-dependent RNA helicase DBPA; parallel alpha-be | 99.92 | |
| 2p6n_A | 191 | ATP-dependent RNA helicase DDX41; DEAD, structural | 99.92 | |
| 3l9o_A | 1108 | ATP-dependent RNA helicase DOB1; REC-A fold, winge | 99.91 | |
| 1t5i_A | 172 | C_terminal domain of A probable ATP-dependent RNA | 99.91 | |
| 4a2p_A | 556 | RIG-I, retinoic acid inducible protein I; hydrolas | 99.91 | |
| 2rb4_A | 175 | ATP-dependent RNA helicase DDX25; rossmann fold, s | 99.91 | |
| 2jgn_A | 185 | DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosp | 99.91 | |
| 1fuk_A | 165 | Eukaryotic initiation factor 4A; helicase, DEAD-bo | 99.91 | |
| 3eaq_A | 212 | Heat resistant RNA dependent ATPase; DEAD box RNA | 99.9 | |
| 1gku_B | 1054 | Reverse gyrase, TOP-RG; topoisomerase, DNA superco | 99.9 | |
| 3tbk_A | 555 | RIG-I helicase domain; DECH helicase, ATP binding, | 99.9 | |
| 2p6r_A | 702 | Afuhel308 helicase; protein-DNA complex, SF2 helic | 99.9 | |
| 4a2q_A | 797 | RIG-I, retinoic acid inducible protein I; hydrolas | 99.9 | |
| 1tf5_A | 844 | Preprotein translocase SECA subunit; ATPase, helic | 99.9 | |
| 2xgj_A | 1010 | ATP-dependent RNA helicase DOB1; hydrolase-RNA com | 99.9 | |
| 2va8_A | 715 | SSO2462, SKI2-type helicase; hydrolase, DNA repair | 99.9 | |
| 2fsf_A | 853 | Preprotein translocase SECA subunit; ATPase, DNA-R | 99.9 | |
| 2zj8_A | 720 | DNA helicase, putative SKI2-type helicase; RECA fo | 99.89 | |
| 4a4z_A | 997 | Antiviral helicase SKI2; hydrolase, ATPase, mRNA d | 99.89 | |
| 3i32_A | 300 | Heat resistant RNA dependent ATPase; RNA helicase, | 99.89 | |
| 1nkt_A | 922 | Preprotein translocase SECA 1 subunit; preprotein | 99.88 | |
| 4a2w_A | 936 | RIG-I, retinoic acid inducible protein I; hydrolas | 99.88 | |
| 3b6e_A | 216 | Interferon-induced helicase C domain-containing P; | 99.87 | |
| 2yjt_D | 170 | ATP-dependent RNA helicase SRMB, regulator of ribo | 99.77 | |
| 3b6e_A | 216 | Interferon-induced helicase C domain-containing P; | 99.86 | |
| 2vl7_A | 540 | XPD; helicase, unknown function; 2.25A {Sulfolobus | 99.85 | |
| 4gl2_A | 699 | Interferon-induced helicase C domain-containing P; | 99.85 | |
| 3llm_A | 235 | ATP-dependent RNA helicase A; alpha-beta-alpha, st | 99.84 | |
| 1gm5_A | 780 | RECG; helicase, replication restart; HET: DNA ADP; | 99.84 | |
| 1wp9_A | 494 | ATP-dependent RNA helicase, putative; ATPase, DNA | 99.83 | |
| 3crv_A | 551 | XPD/RAD3 related DNA helicase; XPD helicase DNA re | 99.83 | |
| 2eyq_A | 1151 | TRCF, transcription-repair coupling factor; MFD, S | 99.82 | |
| 2jlq_A | 451 | Serine protease subunit NS3; ribonucleoprotein, nu | 99.79 | |
| 1rif_A | 282 | DAR protein, DNA helicase UVSW; bacteriophage, REC | 99.79 | |
| 2oca_A | 510 | DAR protein, ATP-dependent DNA helicase UVSW; ATP- | 99.78 | |
| 1rif_A | 282 | DAR protein, DNA helicase UVSW; bacteriophage, REC | 99.78 | |
| 2fwr_A | 472 | DNA repair protein RAD25; DNA unwinding, XPB, DNA | 99.78 | |
| 3llm_A | 235 | ATP-dependent RNA helicase A; alpha-beta-alpha, st | 99.77 | |
| 2whx_A | 618 | Serine protease/ntpase/helicase NS3; transcription | 99.76 | |
| 2ipc_A | 997 | Preprotein translocase SECA subunit; nucleotide bi | 99.74 | |
| 3o8b_A | 666 | HCV NS3 protease/helicase; ntpase, RNA, translocat | 99.74 | |
| 3h1t_A | 590 | Type I site-specific restriction-modification syst | 99.72 | |
| 4a15_A | 620 | XPD helicase, ATP-dependent DNA helicase TA0057; h | 99.71 | |
| 2wv9_A | 673 | Flavivirin protease NS2B regulatory subunit, FLAV | 99.71 | |
| 2fz4_A | 237 | DNA repair protein RAD25; RECA-like domain, DNA da | 99.7 | |
| 1yks_A | 440 | Genome polyprotein [contains: flavivirin protease | 99.7 | |
| 2v6i_A | 431 | RNA helicase; membrane, hydrolase, transmembrane, | 99.69 | |
| 2fz4_A | 237 | DNA repair protein RAD25; RECA-like domain, DNA da | 99.68 | |
| 2z83_A | 459 | Helicase/nucleoside triphosphatase; hydrolase, mem | 99.68 | |
| 2xau_A | 773 | PRE-mRNA-splicing factor ATP-dependent RNA helica; | 99.67 | |
| 2w00_A | 1038 | HSDR, R.ECOR124I; ATP-binding, DNA-binding, restri | 99.67 | |
| 1z5z_A | 271 | Helicase of the SNF2/RAD54 family; hydrolase, reco | 99.65 | |
| 1z63_A | 500 | Helicase of the SNF2/RAD54 hamily; protein-DNA com | 99.52 | |
| 3dmq_A | 968 | RNA polymerase-associated protein RAPA; SWF2/SNF2, | 99.51 | |
| 3rc3_A | 677 | ATP-dependent RNA helicase SUPV3L1, mitochondrial; | 99.49 | |
| 3crv_A | 551 | XPD/RAD3 related DNA helicase; XPD helicase DNA re | 99.44 | |
| 1z3i_X | 644 | Similar to RAD54-like; recombination ATPase helica | 99.39 | |
| 3mwy_W | 800 | Chromo domain-containing protein 1; SWI2/SNF2 ATPa | 99.37 | |
| 2vl7_A | 540 | XPD; helicase, unknown function; 2.25A {Sulfolobus | 99.3 | |
| 3jux_A | 822 | Protein translocase subunit SECA; protein transloc | 99.26 | |
| 4a15_A | 620 | XPD helicase, ATP-dependent DNA helicase TA0057; h | 99.0 | |
| 1w36_D | 608 | RECD, exodeoxyribonuclease V alpha chain; recombin | 98.66 | |
| 1w36_D | 608 | RECD, exodeoxyribonuclease V alpha chain; recombin | 98.4 | |
| 1c4o_A | 664 | DNA nucleotide excision repair enzyme UVRB; uvrabc | 98.25 | |
| 2d7d_A | 661 | Uvrabc system protein B; helicase, protein-DNA-ADP | 98.07 | |
| 4b3f_X | 646 | DNA-binding protein smubp-2; hydrolase, helicase; | 97.77 | |
| 3upu_A | 459 | ATP-dependent DNA helicase DDA; RECA-like domain, | 97.74 | |
| 2gk6_A | 624 | Regulator of nonsense transcripts 1; UPF1, helicas | 97.72 | |
| 3e1s_A | 574 | Exodeoxyribonuclease V, subunit RECD; alpha and be | 97.69 | |
| 4b3f_X | 646 | DNA-binding protein smubp-2; hydrolase, helicase; | 97.69 | |
| 3upu_A | 459 | ATP-dependent DNA helicase DDA; RECA-like domain, | 97.56 | |
| 2gk6_A | 624 | Regulator of nonsense transcripts 1; UPF1, helicas | 97.54 | |
| 2wjy_A | 800 | Regulator of nonsense transcripts 1; nonsense medi | 97.52 | |
| 2xzl_A | 802 | ATP-dependent helicase NAM7; hydrolase-RNA complex | 97.47 | |
| 2xzl_A | 802 | ATP-dependent helicase NAM7; hydrolase-RNA complex | 97.45 | |
| 3e1s_A | 574 | Exodeoxyribonuclease V, subunit RECD; alpha and be | 97.37 | |
| 2wjy_A | 800 | Regulator of nonsense transcripts 1; nonsense medi | 97.32 | |
| 2o0j_A | 385 | Terminase, DNA packaging protein GP17; nucleotide- | 97.1 | |
| 2o0j_A | 385 | Terminase, DNA packaging protein GP17; nucleotide- | 96.9 | |
| 3cpe_A | 592 | Terminase, DNA packaging protein GP17; large termi | 96.49 | |
| 3cpe_A | 592 | Terminase, DNA packaging protein GP17; large termi | 96.46 | |
| 2p6n_A | 191 | ATP-dependent RNA helicase DDX41; DEAD, structural | 96.42 | |
| 3hgt_A | 328 | HDA1 complex subunit 3; RECA-like domain, SWI2/SNF | 96.36 | |
| 3ec2_A | 180 | DNA replication protein DNAC; helicase loader, rep | 95.89 | |
| 2kjq_A | 149 | DNAA-related protein; solution structure, NESG, st | 95.84 | |
| 3ec2_A | 180 | DNA replication protein DNAC; helicase loader, rep | 95.58 | |
| 3lfu_A | 647 | DNA helicase II; SF1 helicase, ATP-binding, DNA da | 95.47 | |
| 3lfu_A | 647 | DNA helicase II; SF1 helicase, ATP-binding, DNA da | 95.46 | |
| 1t5i_A | 172 | C_terminal domain of A probable ATP-dependent RNA | 95.44 | |
| 2hjv_A | 163 | ATP-dependent RNA helicase DBPA; parallel alpha-be | 95.43 | |
| 2rb4_A | 175 | ATP-dependent RNA helicase DDX25; rossmann fold, s | 95.34 | |
| 3te6_A | 318 | Regulatory protein SIR3; heterochromatin, gene sil | 95.32 | |
| 3te6_A | 318 | Regulatory protein SIR3; heterochromatin, gene sil | 95.3 | |
| 2jgn_A | 185 | DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosp | 94.98 | |
| 1fuk_A | 165 | Eukaryotic initiation factor 4A; helicase, DEAD-bo | 94.96 | |
| 1pjr_A | 724 | PCRA; DNA repair, DNA replication, SOS response, h | 94.72 | |
| 3vkw_A | 446 | Replicase large subunit; alpha/beta domain, helica | 94.6 | |
| 2orw_A | 184 | Thymidine kinase; TMTK, TP4A, transferase; HET: 4T | 94.52 | |
| 1pjr_A | 724 | PCRA; DNA repair, DNA replication, SOS response, h | 94.4 | |
| 2b8t_A | 223 | Thymidine kinase; deoxyribonucleoside kinase, zinc | 94.27 | |
| 1uaa_A | 673 | REP helicase, protein (ATP-dependent DNA helicase | 94.24 | |
| 1uaa_A | 673 | REP helicase, protein (ATP-dependent DNA helicase | 94.17 | |
| 2kjq_A | 149 | DNAA-related protein; solution structure, NESG, st | 93.91 | |
| 3u4q_A | 1232 | ATP-dependent helicase/nuclease subunit A; helicas | 93.9 | |
| 3eie_A | 322 | Vacuolar protein sorting-associated protein 4; AAA | 93.88 | |
| 1l8q_A | 324 | Chromosomal replication initiator protein DNAA; AA | 93.78 | |
| 3u4q_A | 1232 | ATP-dependent helicase/nuclease subunit A; helicas | 93.66 | |
| 1xx6_A | 191 | Thymidine kinase; NESG, northeast structural genom | 93.62 | |
| 2b8t_A | 223 | Thymidine kinase; deoxyribonucleoside kinase, zinc | 93.55 | |
| 2zpa_A | 671 | Uncharacterized protein YPFI; RNA modification enz | 93.37 | |
| 3u61_B | 324 | DNA polymerase accessory protein 44; AAA+, ATP hyd | 93.37 | |
| 2w58_A | 202 | DNAI, primosome component (helicase loader); ATP-b | 93.32 | |
| 1a5t_A | 334 | Delta prime, HOLB; zinc finger, DNA replication; 2 | 93.18 | |
| 1l8q_A | 324 | Chromosomal replication initiator protein DNAA; AA | 93.16 | |
| 2chg_A | 226 | Replication factor C small subunit; DNA-binding pr | 93.13 | |
| 3h4m_A | 285 | Proteasome-activating nucleotidase; ATPase, PAN, A | 92.99 | |
| 3bos_A | 242 | Putative DNA replication factor; P-loop containing | 92.92 | |
| 2j9r_A | 214 | Thymidine kinase; TK1, DNK, lasso, transferase, AT | 92.82 | |
| 3vkw_A | 446 | Replicase large subunit; alpha/beta domain, helica | 92.79 | |
| 2orw_A | 184 | Thymidine kinase; TMTK, TP4A, transferase; HET: 4T | 92.69 | |
| 2v1u_A | 387 | Cell division control protein 6 homolog; DNA repli | 92.6 | |
| 3cf0_A | 301 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 92.52 | |
| 1xx6_A | 191 | Thymidine kinase; NESG, northeast structural genom | 92.21 | |
| 1a5t_A | 334 | Delta prime, HOLB; zinc finger, DNA replication; 2 | 92.17 | |
| 1d2n_A | 272 | N-ethylmaleimide-sensitive fusion protein; hexamer | 92.12 | |
| 3syl_A | 309 | Protein CBBX; photosynthesis, rubisco activase, AA | 92.09 | |
| 3syl_A | 309 | Protein CBBX; photosynthesis, rubisco activase, AA | 92.06 | |
| 2yjt_D | 170 | ATP-dependent RNA helicase SRMB, regulator of ribo | 91.29 | |
| 2chg_A | 226 | Replication factor C small subunit; DNA-binding pr | 92.0 | |
| 3vfd_A | 389 | Spastin; ATPase, microtubule severing, hydrolase; | 92.0 | |
| 1w4r_A | 195 | Thymidine kinase; type II, human, cytosolic, phosp | 91.86 | |
| 2z4s_A | 440 | Chromosomal replication initiator protein DNAA; AA | 91.71 | |
| 2zpa_A | 671 | Uncharacterized protein YPFI; RNA modification enz | 91.68 | |
| 2orv_A | 234 | Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2 | 91.64 | |
| 2z4s_A | 440 | Chromosomal replication initiator protein DNAA; AA | 91.38 | |
| 3eaq_A | 212 | Heat resistant RNA dependent ATPase; DEAD box RNA | 91.21 | |
| 2r6a_A | 454 | DNAB helicase, replicative helicase; replication, | 91.11 | |
| 3e2i_A | 219 | Thymidine kinase; Zn-binding, ATP-binding, DNA syn | 91.11 | |
| 1njg_A | 250 | DNA polymerase III subunit gamma; rossman-like fol | 91.1 | |
| 3i32_A | 300 | Heat resistant RNA dependent ATPase; RNA helicase, | 91.07 | |
| 2v1u_A | 387 | Cell division control protein 6 homolog; DNA repli | 91.06 | |
| 4b4t_J | 405 | 26S protease regulatory subunit 8 homolog; hydrola | 90.86 | |
| 1g5t_A | 196 | COB(I)alamin adenosyltransferase; P-loop protein, | 90.78 | |
| 1g5t_A | 196 | COB(I)alamin adenosyltransferase; P-loop protein, | 90.56 | |
| 3kl4_A | 433 | SRP54, signal recognition 54 kDa protein; signal r | 90.51 | |
| 4b4t_M | 434 | 26S protease regulatory subunit 6A; hydrolase, AAA | 90.45 | |
| 3bos_A | 242 | Putative DNA replication factor; P-loop containing | 90.36 | |
| 1iqp_A | 327 | RFCS; clamp loader, extended AAA-ATPase domain, co | 90.35 | |
| 2qz4_A | 262 | Paraplegin; AAA+, SPG7, protease, ADP, structural | 90.23 | |
| 3h4m_A | 285 | Proteasome-activating nucleotidase; ATPase, PAN, A | 89.97 | |
| 1sxj_D | 353 | Activator 1 41 kDa subunit; clamp loader, processi | 89.96 | |
| 2qby_A | 386 | CDC6 homolog 1, cell division control protein 6 ho | 89.73 | |
| 3pfi_A | 338 | Holliday junction ATP-dependent DNA helicase RUVB; | 89.73 | |
| 1fnn_A | 389 | CDC6P, cell division control protein 6; ORC1, AAA | 89.68 | |
| 2qgz_A | 308 | Helicase loader, putative primosome component; str | 89.5 | |
| 1sxj_E | 354 | Activator 1 40 kDa subunit; clamp loader, processi | 89.49 | |
| 2qby_B | 384 | CDC6 homolog 3, cell division control protein 6 ho | 89.44 | |
| 2j9r_A | 214 | Thymidine kinase; TK1, DNK, lasso, transferase, AT | 89.34 | |
| 1d2n_A | 272 | N-ethylmaleimide-sensitive fusion protein; hexamer | 89.22 | |
| 2dr3_A | 247 | UPF0273 protein PH0284; RECA superfamily ATPase, h | 89.2 | |
| 2qby_B | 384 | CDC6 homolog 3, cell division control protein 6 ho | 88.96 | |
| 2w0m_A | 235 | SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus | 88.89 | |
| 2zan_A | 444 | Vacuolar protein sorting-associating protein 4B; S | 88.86 | |
| 2qz4_A | 262 | Paraplegin; AAA+, SPG7, protease, ADP, structural | 88.83 | |
| 2q6t_A | 444 | DNAB replication FORK helicase; hydrolase; 2.90A { | 88.76 | |
| 1w4r_A | 195 | Thymidine kinase; type II, human, cytosolic, phosp | 88.75 | |
| 2r6a_A | 454 | DNAB helicase, replicative helicase; replication, | 88.64 | |
| 2q6t_A | 444 | DNAB replication FORK helicase; hydrolase; 2.90A { | 88.6 | |
| 2w0m_A | 235 | SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus | 88.59 | |
| 3eie_A | 322 | Vacuolar protein sorting-associated protein 4; AAA | 88.42 | |
| 4a1f_A | 338 | DNAB helicase, replicative DNA helicase; hydrolase | 88.23 | |
| 2orv_A | 234 | Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2 | 88.19 | |
| 1njg_A | 250 | DNA polymerase III subunit gamma; rossman-like fol | 88.19 | |
| 2p65_A | 187 | Hypothetical protein PF08_0063; CLPB, malaria, str | 87.98 | |
| 2chq_A | 319 | Replication factor C small subunit; DNA-binding pr | 87.94 | |
| 4b4t_K | 428 | 26S protease regulatory subunit 6B homolog; hydrol | 87.77 | |
| 2dr3_A | 247 | UPF0273 protein PH0284; RECA superfamily ATPase, h | 87.5 | |
| 1jr3_A | 373 | DNA polymerase III subunit gamma; processivity, pr | 87.46 | |
| 2qby_A | 386 | CDC6 homolog 1, cell division control protein 6 ho | 87.23 | |
| 1sxj_B | 323 | Activator 1 37 kDa subunit; clamp loader, processi | 87.15 | |
| 3bh0_A | 315 | DNAB-like replicative helicase; ATPase, replicatio | 86.59 | |
| 1fnn_A | 389 | CDC6P, cell division control protein 6; ORC1, AAA | 86.47 | |
| 1iqp_A | 327 | RFCS; clamp loader, extended AAA-ATPase domain, co | 86.08 | |
| 2cvh_A | 220 | DNA repair and recombination protein RADB; filamen | 86.07 | |
| 1sxj_C | 340 | Activator 1 40 kDa subunit; clamp loader, processi | 86.04 | |
| 4b4t_H | 467 | 26S protease regulatory subunit 7 homolog; hydrola | 85.88 | |
| 2l8b_A | 189 | Protein TRAI, DNA helicase I; RECD, hydrolase; NMR | 85.7 | |
| 3u61_B | 324 | DNA polymerase accessory protein 44; AAA+, ATP hyd | 85.33 | |
| 3dm5_A | 443 | SRP54, signal recognition 54 kDa protein; protein- | 85.31 | |
| 3vfd_A | 389 | Spastin; ATPase, microtubule severing, hydrolase; | 85.09 | |
| 2qp9_X | 355 | Vacuolar protein sorting-associated protein 4; ATP | 85.03 | |
| 1cr0_A | 296 | DNA primase/helicase; RECA-type protein fold, tran | 85.0 | |
| 1w5s_A | 412 | Origin recognition complex subunit 2 ORC2; replica | 84.86 | |
| 4b4t_J | 405 | 26S protease regulatory subunit 8 homolog; hydrola | 84.6 | |
| 3pfi_A | 338 | Holliday junction ATP-dependent DNA helicase RUVB; | 84.42 | |
| 4b4t_I | 437 | 26S protease regulatory subunit 4 homolog; hydrola | 84.17 | |
| 4b4t_L | 437 | 26S protease subunit RPT4; hydrolase, AAA-atpases, | 84.15 | |
| 2qp9_X | 355 | Vacuolar protein sorting-associated protein 4; ATP | 83.87 | |
| 4a1f_A | 338 | DNAB helicase, replicative DNA helicase; hydrolase | 83.47 | |
| 3bh0_A | 315 | DNAB-like replicative helicase; ATPase, replicatio | 83.17 | |
| 1xp8_A | 366 | RECA protein, recombinase A; recombination, radior | 83.17 | |
| 1sxj_D | 353 | Activator 1 41 kDa subunit; clamp loader, processi | 83.12 | |
| 2ehv_A | 251 | Hypothetical protein PH0186; KAIC, RECA ATPase, un | 82.96 | |
| 3hu3_A | 489 | Transitional endoplasmic reticulum ATPase; VCP, tr | 82.94 | |
| 3cmu_A | 2050 | Protein RECA, recombinase A; homologous recombinat | 82.8 | |
| 3hu3_A | 489 | Transitional endoplasmic reticulum ATPase; VCP, tr | 82.42 | |
| 3n70_A | 145 | Transport activator; sigma-54, ntpase, PSI, MCSG, | 81.59 | |
| 1hqc_A | 324 | RUVB; extended AAA-ATPase domain, complex with nuc | 81.54 | |
| 2cvh_A | 220 | DNA repair and recombination protein RADB; filamen | 81.44 | |
| 3kl4_A | 433 | SRP54, signal recognition 54 kDa protein; signal r | 81.23 | |
| 3co5_A | 143 | Putative two-component system transcriptional RES | 80.63 | |
| 1nlf_A | 279 | Regulatory protein REPA; replicative DNA helicase | 80.63 | |
| 3cmu_A | 2050 | Protein RECA, recombinase A; homologous recombinat | 80.31 | |
| 2gno_A | 305 | DNA polymerase III, gamma subunit-related protein; | 80.31 | |
| 1sxj_B | 323 | Activator 1 37 kDa subunit; clamp loader, processi | 80.05 | |
| 1cr0_A | 296 | DNA primase/helicase; RECA-type protein fold, tran | 80.01 |
| >4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-62 Score=628.75 Aligned_cols=383 Identities=16% Similarity=0.151 Sum_probs=281.2
Q ss_pred CCHHHHHHHHhcCCCCCCCHHHHHhHHhhhcC-CcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCH
Q psy15524 398 IHPFMKKNLNEGMNITQVTTVQQLSIQPILDG-GDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTR 476 (930)
Q Consensus 398 l~~~~~~~l~~~~~~~~~~~iQ~~~i~~il~~-~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~Ptr 476 (930)
|++...+.+. ..+|+.++|+|.++++.++.+ +|++++||||||||++|.+|+++.+.. .++.++||++|+|
T Consensus 911 L~~~~~e~l~-~~~f~~fnpiQ~q~~~~l~~~~~nvlv~APTGSGKTliaelail~~l~~-------~~~~kavyi~P~r 982 (1724)
T 4f92_B 911 LRNSAFESLY-QDKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQ-------SSEGRCVYITPME 982 (1724)
T ss_dssp SCCHHHHTTT-TTTCSBCCHHHHHHHHHHHSCCSCEEEECCTTSCCHHHHHHHHHHHHHH-------CTTCCEEEECSCH
T ss_pred ccCHHHHHHH-HhcCCCCCHHHHHHHHHHhcCCCcEEEEeCCCCCchHHHHHHHHHHHHh-------CCCCEEEEEcChH
Confidence 3344555554 258999999999999999865 679999999999999999999999876 3466899999999
Q ss_pred HHHHHHHHHHHHhhccCCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhccCCc-ccccceEEEEecchhhh
Q psy15524 477 ELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETL-KFSKVEHLVLDEADRIL 555 (930)
Q Consensus 477 eLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~-~~~~l~~lVlDEah~l~ 555 (930)
+||.|+++.|.+.+.......++.++|+.... .+...+++|+|||||+|..+++++... .+++++++|+||+|++.
T Consensus 983 aLa~q~~~~~~~~f~~~~g~~V~~ltGd~~~~---~~~~~~~~IiV~TPEkld~llr~~~~~~~l~~v~lvViDE~H~l~ 1059 (1724)
T 4f92_B 983 ALAEQVYMDWYEKFQDRLNKKVVLLTGETSTD---LKLLGKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVHLIG 1059 (1724)
T ss_dssp HHHHHHHHHHHHHHTTTSCCCEEECCSCHHHH---HHHHHHCSEEEECHHHHHHHHTTTTTCHHHHSCSEEEECCGGGGG
T ss_pred HHHHHHHHHHHHHhchhcCCEEEEEECCCCcc---hhhcCCCCEEEECHHHHHHHHhCcccccccceeeEEEeechhhcC
Confidence 99999999998876654445677778875432 233456899999999998888775433 47899999999999887
Q ss_pred hcCcHHHHHHHHHHHh----hcCccceEEEEccccCHHHHHHHhhhcCCCE-EEEccCCCCcccCccceecCCCceEEEE
Q psy15524 556 DQGYERDIAEFLEILK----KQKPQFQSILLSATLTPAVQRLAGMTLQNPI-QIDAADSTDIHNTTDSLVIPDSLKQHFI 630 (930)
Q Consensus 556 ~~g~~~~l~~i~~~l~----~~~~~~q~vl~SAT~~~~~~~l~~~~~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 630 (930)
+. .+..++.++..+. ...++.|++++|||+++ ..+++.+...++. ...+.. ...|..+..++.
T Consensus 1060 d~-rg~~le~il~rl~~i~~~~~~~~riI~lSATl~N-~~dla~WL~~~~~~~~~~~~----------~~RPvpL~~~i~ 1127 (1724)
T 4f92_B 1060 GE-NGPVLEVICSRMRYISSQIERPIRIVALSSSLSN-AKDVAHWLGCSATSTFNFHP----------NVRPVPLELHIQ 1127 (1724)
T ss_dssp ST-THHHHHHHHHHHHHHHHTTSSCCEEEEEESCBTT-HHHHHHHHTCCSTTEEECCG----------GGCSSCEEEEEE
T ss_pred CC-CCccHHHHHHHHHHHHhhcCCCceEEEEeCCCCC-HHHHHHHhCCCCCCeEEeCC----------CCCCCCeEEEEE
Confidence 74 5666766666553 34568899999999986 4445544332221 111111 112344554444
Q ss_pred EcCchh---hHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCC------------------------
Q psy15524 631 VTPPKL---RLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGE------------------------ 683 (930)
Q Consensus 631 ~~~~~~---~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~------------------------ 683 (930)
..+... ++..+..-+...... ...++++||||+|+..++..+..|......
T Consensus 1128 ~~~~~~~~~~~~~~~~~~~~~i~~--~~~~~~~lVF~~sR~~~~~~A~~L~~~~~~~~~~~~~~~~~~~~l~~~l~~~~d 1205 (1724)
T 4f92_B 1128 GFNISHTQTRLLSMAKPVYHAITK--HSPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSD 1205 (1724)
T ss_dssp EECCCSHHHHHHTTHHHHHHHHHH--HCSSSCEEEEESSHHHHHHHHHHHHHHHHHTTCTTTTBCSCHHHHHHHHTTCCC
T ss_pred eccCCCchhhhhhhcchHHHHHHH--hcCCCCeeeeCCCHHHHHHHHHHHHHHHhhccchhhhhcccHHHHHHHHhhccc
Confidence 333322 222111111111111 113679999999999998877655332100
Q ss_pred -------CceEEEecCCCCHHHHHHHHHHhhcCCCcEEEeccccccccCCCCccEEEEe----------cCCCChhhHHh
Q psy15524 684 -------NIAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQY----------TAPSSSTDYVH 746 (930)
Q Consensus 684 -------~~~~~~lhg~~~~~~R~~v~~~F~~~~~~vLv~T~~~~~GlDip~v~~VI~~----------~~p~s~~~y~q 746 (930)
..++..+||+|++.+|..+++.|++|.++|||||+++++|+|+|++++||.. ..|.++.+|+|
T Consensus 1206 ~~L~~~l~~GIa~hHagL~~~~R~~VE~lF~~G~i~VLvaT~tlA~GVnlPa~~VVI~~~~~~dg~~~~~~~~s~~~~~Q 1285 (1724)
T 4f92_B 1206 STLKETLLNGVGYLHEGLSPMERRLVEQLFSSGAIQVVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYPIYDVLQ 1285 (1724)
T ss_dssp HHHHHHHHTTEEEECTTSCHHHHHHHHHHHHHTSBCEEEEEGGGSSSCCCCBSEEEEECSEEEETTTTEEEECCHHHHHH
T ss_pred HHHHHHHhCCEEEECCCCCHHHHHHHHHHHHCCCCeEEEEChHHHcCCCCCccEEEEecCccccCcccccCCCCHHHHHH
Confidence 1235566999999999999999999999999999999999999999999942 24678999999
Q ss_pred hhcccccCCC--CceEEEEeCcccHHHHHHHHhcCCccchhchHHHHHhhhhhhccCcccc
Q psy15524 747 RVGRTARVGH--EGSSLLFLIPSEVKLVEELQNRRIRIEEIKLKDCLQNLLSVKMEGDLSR 805 (930)
Q Consensus 747 r~GRagR~g~--~g~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 805 (930)
|+|||||.|. .|.|++++.+.+..+++++...+.++++.....+.+++++++..+....
T Consensus 1286 m~GRAGR~g~d~~G~avll~~~~~~~~~~~ll~~~~pveS~L~~~l~~~l~~eI~~~~i~~ 1346 (1724)
T 4f92_B 1286 MVGHANRPLQDDEGRCVIMCQGSKKDFFKKFLYEPLPVESHLDHCMHDHFNAEIVTKTIEN 1346 (1724)
T ss_dssp HHTTBCCTTTCSCEEEEEEEEGGGHHHHHHHTTSCBCCCCCGGGSCHHHHHHHHHTTSCCB
T ss_pred hhccccCCCCCCceEEEEEecchHHHHHHHHhCCCCceeeecccchHHHHHHHHHhcccCC
Confidence 9999999998 6999999999999999999888888887666666677777776666543
|
| >2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-56 Score=509.13 Aligned_cols=360 Identities=31% Similarity=0.494 Sum_probs=315.1
Q ss_pred CCCCCCCCCCHHHHHHHHhcCCCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeE
Q psy15524 390 TSYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYA 469 (930)
Q Consensus 390 ~~f~~l~~l~~~~~~~l~~~~~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~ 469 (930)
.+|+++ ++++.+.++|.+ +||..|||+|+++||.+++|+|++++||||||||++|++|+++.+...... ....++++
T Consensus 56 ~~f~~~-~l~~~l~~~l~~-~g~~~pt~iQ~~ai~~i~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~-~~~~~~~~ 132 (434)
T 2db3_A 56 QHFTSA-DLRDIIIDNVNK-SGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLEDPHE-LELGRPQV 132 (434)
T ss_dssp CCGGGS-CCCHHHHHHHHH-TTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCCC-CCTTCCSE
T ss_pred CChhhc-CCCHHHHHHHHH-cCCCCCCHHHHHHHHHHhcCCCEEEECCCCCCchHHHHHHHHHHHHhcccc-cccCCccE
Confidence 579999 999999999985 899999999999999999999999999999999999999999998764321 22457899
Q ss_pred EEEccCHHHHHHHHHHHHHhhccCCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhccCCcccccceEEEEe
Q psy15524 470 VIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLD 549 (930)
Q Consensus 470 lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlD 549 (930)
||++|||+||.|+++.+.+++.... ..+..++||.....+...+..+++|+|+|||+|.+++.+ ....+++++++|+|
T Consensus 133 lil~PtreLa~Q~~~~~~~~~~~~~-~~~~~~~gg~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~-~~~~l~~~~~lVlD 210 (434)
T 2db3_A 133 VIVSPTRELAIQIFNEARKFAFESY-LKIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDR-TFITFEDTRFVVLD 210 (434)
T ss_dssp EEECSSHHHHHHHHHHHHHHTTTSS-CCCCEECTTSCHHHHHHHHTTCCSEEEECHHHHHHHHHT-TSCCCTTCCEEEEE
T ss_pred EEEecCHHHHHHHHHHHHHHhccCC-cEEEEEECCCCHHHHHHHhhcCCCEEEEChHHHHHHHHh-CCcccccCCeEEEc
Confidence 9999999999999999999886543 456778899988888888888999999999999999876 44668999999999
Q ss_pred cchhhhhcCcHHHHHHHHHHHhhcCccceEEEEccccCHHHHHHHhhhcCCCEEEEccCCCCcccCccceecCCCceEEE
Q psy15524 550 EADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHF 629 (930)
Q Consensus 550 Eah~l~~~g~~~~l~~i~~~l~~~~~~~q~vl~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 629 (930)
|||+++++||...+..++..+.. .+.+|+++||||+++.+..++..++.++..+.+.... .....+.+.+
T Consensus 211 Eah~~~~~gf~~~~~~i~~~~~~-~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~---------~~~~~i~~~~ 280 (434)
T 2db3_A 211 EADRMLDMGFSEDMRRIMTHVTM-RPEHQTLMFSATFPEEIQRMAGEFLKNYVFVAIGIVG---------GACSDVKQTI 280 (434)
T ss_dssp THHHHTSTTTHHHHHHHHHCTTS-CSSCEEEEEESCCCHHHHHHHHTTCSSCEEEEESSTT---------CCCTTEEEEE
T ss_pred cHhhhhccCcHHHHHHHHHhcCC-CCCceEEEEeccCCHHHHHHHHHhccCCEEEEecccc---------ccccccceEE
Confidence 99999999999999988877532 4578999999999999999999999999888765432 1234577888
Q ss_pred EEcCchhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHHHHHHHHHHhhcC
Q psy15524 630 IVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSV 709 (930)
Q Consensus 630 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~v~~~F~~~ 709 (930)
..+....+...+...+... ..++||||++++.++.+++.|.+. ++.+..+||++++.+|..++++|++|
T Consensus 281 ~~~~~~~k~~~l~~~l~~~--------~~~~lVF~~t~~~a~~l~~~L~~~---~~~~~~lhg~~~~~~R~~~l~~F~~g 349 (434)
T 2db3_A 281 YEVNKYAKRSKLIEILSEQ--------ADGTIVFVETKRGADFLASFLSEK---EFPTTSIHGDRLQSQREQALRDFKNG 349 (434)
T ss_dssp EECCGGGHHHHHHHHHHHC--------CTTEEEECSSHHHHHHHHHHHHHT---TCCEEEESTTSCHHHHHHHHHHHHTS
T ss_pred EEeCcHHHHHHHHHHHHhC--------CCCEEEEEeCcHHHHHHHHHHHhC---CCCEEEEeCCCCHHHHHHHHHHHHcC
Confidence 8888888888888887653 345999999999999999999875 78899999999999999999999999
Q ss_pred CCcEEEeccccccccCCCCccEEEEecCCCChhhHHhhhcccccCCCCceEEEEeCcc-cHHHHHHH
Q psy15524 710 KSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPS-EVKLVEEL 775 (930)
Q Consensus 710 ~~~vLv~T~~~~~GlDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~-e~~~~~~l 775 (930)
+.+|||||++++||+|+|++++||+||+|.+..+|+||+|||||.|+.|.+++|+.++ +..+.+.+
T Consensus 350 ~~~vLvaT~v~~rGlDi~~v~~VI~~d~p~~~~~y~qriGR~gR~g~~G~a~~~~~~~~~~~~~~~l 416 (434)
T 2db3_A 350 SMKVLIATSVASRGLDIKNIKHVINYDMPSKIDDYVHRIGRTGRVGNNGRATSFFDPEKDRAIAADL 416 (434)
T ss_dssp SCSEEEECGGGTSSCCCTTCCEEEESSCCSSHHHHHHHHTTSSCTTCCEEEEEEECTTTCGGGHHHH
T ss_pred CCcEEEEchhhhCCCCcccCCEEEEECCCCCHHHHHHHhcccccCCCCCEEEEEEeccccHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999964 44344333
|
| >3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-54 Score=508.00 Aligned_cols=378 Identities=31% Similarity=0.522 Sum_probs=310.8
Q ss_pred CCCCC---CCCCHHHHHHHHhcCCCCCCCHHHHHhHHhhh--cCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCC
Q psy15524 391 SYEEF---PGIHPFMKKNLNEGMNITQVTTVQQLSIQPIL--DGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKD 465 (930)
Q Consensus 391 ~f~~l---~~l~~~~~~~l~~~~~~~~~~~iQ~~~i~~il--~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~ 465 (930)
+|+++ ..|++++.+++. .+||..|||+|.++|+.++ .++|++++||||||||++|++|+++.+..... ....
T Consensus 18 ~~~~l~~~~~l~~~l~~~l~-~~g~~~~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~--~~~~ 94 (579)
T 3sqw_A 18 TLDSLLEEGVLDKEIHKAIT-RMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKF--DSQY 94 (579)
T ss_dssp CHHHHHHTTSSCHHHHHHHH-TTTCSSCCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTT--SSTT
T ss_pred CHHHHhhcCCCCHHHHHHHH-HCCCCCCCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHHHHHHHHHHHHhccc--cccC
Confidence 45554 249999999997 5899999999999999999 78899999999999999999999999876432 1234
Q ss_pred CeeEEEEccCHHHHHHHHHHHHHhhcc---CCCcceEEEeCCCchHHHHHHHh-cCCcEEEECchhHHHhhhccCCcccc
Q psy15524 466 GIYAVIILPTRELALQTLEIFTKLCKS---FTWIVPSWLTGGEKMKSEKARIR-KGISILVATPGRLLDHCKHTETLKFS 541 (930)
Q Consensus 466 ~~~~lil~PtreLa~Q~~~~~~~~~~~---~~~~~~~~~~gg~~~~~~~~~~~-~~~~Ilv~Tp~rl~~~l~~~~~~~~~ 541 (930)
+.++|||+||++|+.|+++.+.+++.. ........+.||.....+...+. .+++|+|+|||+|.+++.+.....++
T Consensus 95 ~~~~lvl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~ 174 (579)
T 3sqw_A 95 MVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFR 174 (579)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCT
T ss_pred CCeEEEEcchHHHHHHHHHHHHHHHhhcccccceEEEEEECCccHHHHHHHHhcCCCCEEEECHHHHHHHHHhccccccc
Confidence 678999999999999999999998642 23345667788888777766664 47999999999999998765445678
Q ss_pred cceEEEEecchhhhhcCcHHHHHHHHHHHhhcC----ccceEEEEccccCHHHHHHHhhhcCCCEEEEccCCCCcccCcc
Q psy15524 542 KVEHLVLDEADRILDQGYERDIAEFLEILKKQK----PQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTD 617 (930)
Q Consensus 542 ~l~~lVlDEah~l~~~g~~~~l~~i~~~l~~~~----~~~q~vl~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~ 617 (930)
.+++||+||||+++++||...+..++..++... +.+|+++||||+++.+..++...+.++..+........
T Consensus 175 ~~~~lViDEah~l~~~gf~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~~~~~~~~~~~~~----- 249 (579)
T 3sqw_A 175 FVDYKVLDEADRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKN----- 249 (579)
T ss_dssp TCCEEEEETHHHHTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSS-----
T ss_pred cCCEEEEEChHHhhcCCCHHHHHHHHHHhhhhhcccccCceEEEEeccCChHHHHHHHHHcCCCceEEEeecCcc-----
Confidence 899999999999999999999999998887543 37799999999999999999999998876654332111
Q ss_pred ceecCCCceEEEEEcCc-hhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCH
Q psy15524 618 SLVIPDSLKQHFIVTPP-KLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQ 696 (930)
Q Consensus 618 ~~~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~ 696 (930)
.......+.+.+..... ..+...+...+...... ...+.++||||+|++.++.+++.|...+..++.+..+||+|++
T Consensus 250 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~ 327 (579)
T 3sqw_A 250 EPEAHERIDQSVVISEKFANSIFAAVEHIKKQIKE--RDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQ 327 (579)
T ss_dssp SCSSCTTEEEEEEEESSTTHHHHHHHHHHHHHHHH--TTTCCEEEEECSSHHHHHHHHHHHHHHHTTTSCEEEESTTSCH
T ss_pred ccccccccceEEEEecchhhhHHHHHHHHHHHHhh--cCCCCcEEEECCcHHHHHHHHHHHHHhhcCCCcEEEecCCCCH
Confidence 11122345555555544 23333333333332211 1126799999999999999999999877778899999999999
Q ss_pred HHHHHHHHHhhcCCCcEEEeccccccccCCCCccEEEEecCCCChhhHHhhhcccccCCCCceEEEEeCcccHHHHHHHH
Q psy15524 697 SERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPSEVKLVEELQ 776 (930)
Q Consensus 697 ~~R~~v~~~F~~~~~~vLv~T~~~~~GlDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~e~~~~~~l~ 776 (930)
.+|..+++.|++|+.+|||||+++++|+|+|+|++||++++|.++..|+||+|||||.|+.|.|++|+.+.|..+++.+.
T Consensus 328 ~~R~~~~~~F~~g~~~vLVaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~~~~~~l~ 407 (579)
T 3sqw_A 328 NKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELE 407 (579)
T ss_dssp HHHHHHHHHHHHCSSEEEEECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGHHHHHHHH
T ss_pred HHHHHHHHHhhcCCCeEEEEcchhhcCCCcccCCEEEEcCCCCCHHHhhhhccccccCCCCceEEEEEcccHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred hc
Q psy15524 777 NR 778 (930)
Q Consensus 777 ~~ 778 (930)
+.
T Consensus 408 ~~ 409 (579)
T 3sqw_A 408 DA 409 (579)
T ss_dssp HH
T ss_pred HH
Confidence 64
|
| >3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-53 Score=505.51 Aligned_cols=438 Identities=29% Similarity=0.463 Sum_probs=337.1
Q ss_pred CCCHHHHHHHHhcCCCCCCCHHHHHhHHhhh--cCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEcc
Q psy15524 397 GIHPFMKKNLNEGMNITQVTTVQQLSIQPIL--DGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILP 474 (930)
Q Consensus 397 ~l~~~~~~~l~~~~~~~~~~~iQ~~~i~~il--~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~P 474 (930)
.|++.+.+.+. .+||..|||+|.++|+.++ .++|++++||||||||++|++|+++.+...... ...+.++|||+|
T Consensus 78 ~l~~~l~~~l~-~~g~~~~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~--~~~~~~~lil~P 154 (563)
T 3i5x_A 78 VLDKEIHKAIT-RMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFD--SQYMVKAVIVAP 154 (563)
T ss_dssp SSCHHHHHHHH-TTCCSSCCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTS--STTSCCEEEECS
T ss_pred CCCHHHHHHHH-HCCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHHHHhcccc--ccCCeeEEEEcC
Confidence 49999999997 5899999999999999999 678999999999999999999999998764321 234678999999
Q ss_pred CHHHHHHHHHHHHHhhcc---CCCcceEEEeCCCchHHHHHHH-hcCCcEEEECchhHHHhhhccCCcccccceEEEEec
Q psy15524 475 TRELALQTLEIFTKLCKS---FTWIVPSWLTGGEKMKSEKARI-RKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDE 550 (930)
Q Consensus 475 treLa~Q~~~~~~~~~~~---~~~~~~~~~~gg~~~~~~~~~~-~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlDE 550 (930)
|++||.|+++.++++... ........+.||.........+ ..+++|+|+|||+|.+++.+.....++++++||+||
T Consensus 155 tr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDE 234 (563)
T 3i5x_A 155 TRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDE 234 (563)
T ss_dssp SHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEET
T ss_pred cHHHHHHHHHHHHHHHhhccccCceeEEEEECCcCHHHHHHHHhcCCCCEEEECcHHHHHHHHhccccccccceEEEEeC
Confidence 999999999999997543 2334466778888777766665 457999999999999998775445678899999999
Q ss_pred chhhhhcCcHHHHHHHHHHHhhcC----ccceEEEEccccCHHHHHHHhhhcCCCEEEEccCCCCcccCccceecCCCce
Q psy15524 551 ADRILDQGYERDIAEFLEILKKQK----PQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLK 626 (930)
Q Consensus 551 ah~l~~~g~~~~l~~i~~~l~~~~----~~~q~vl~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 626 (930)
||+++++||...+..++..++... +.+|+++||||+++.+..++...+.++..+........ .......+.
T Consensus 235 ah~l~~~~f~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~ 309 (563)
T 3i5x_A 235 ADRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKN-----EPEAHERID 309 (563)
T ss_dssp HHHHTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSS-----SCSSCTTEE
T ss_pred HHHHhccchHHHHHHHHHhhhhccccCccCceEEEEEccCCHHHHHHHHHhcCCCceEEEeccCCC-----CccccccCc
Confidence 999999999999999998886533 37899999999999999999999988766554322111 111223455
Q ss_pred EEEEEcCch-hhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHHHHHHHHHH
Q psy15524 627 QHFIVTPPK-LRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKT 705 (930)
Q Consensus 627 ~~~~~~~~~-~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~v~~~ 705 (930)
+.+...... .+...+...+...... ...+.++||||+|++.++.+++.|.+.+..++.+..+||+|++.+|..+++.
T Consensus 310 ~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~ 387 (563)
T 3i5x_A 310 QSVVISEKFANSIFAAVEHIKKQIKE--RDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKR 387 (563)
T ss_dssp EEEEEESSTTHHHHHHHHHHHHHHHH--TTTCCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHH
T ss_pred eEEEECchhHhhHHHHHHHHHHHHhh--cCCCCcEEEEcCcHHHHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHH
Confidence 566555442 3333333333332211 1126799999999999999999999877778899999999999999999999
Q ss_pred hhcCCCcEEEeccccccccCCCCccEEEEecCCCChhhHHhhhcccccCCCCceEEEEeCcccHHHHHHHHhc-CCccch
Q psy15524 706 FRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPSEVKLVEELQNR-RIRIEE 784 (930)
Q Consensus 706 F~~~~~~vLv~T~~~~~GlDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~e~~~~~~l~~~-~~~~~~ 784 (930)
|++|+.+|||||+++++|+|+|+|++||++|+|.++.+|+||+|||||.|+.|.|++|+.+.|..+++.+.+. +++++.
T Consensus 388 f~~g~~~vLvaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~~~~~~l~~~~~~~~~~ 467 (563)
T 3i5x_A 388 FKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELEDAKNIVIAK 467 (563)
T ss_dssp HHHCSSEEEEECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGHHHHHHHHHHHCCCCCE
T ss_pred HhcCCCCEEEEcchhhcCCCcccCCEEEEECCCCchhhhhhhcCccccCCCCceEEEEEchhHHHHHHHHHHHhCCCccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999754 444433
Q ss_pred hchHHHHHhhhhhhccCccccccccchHHHHHHHHHHHHHHHHhcHHHHHHHhhhhHHHHHHhhhcccccccccccccCC
Q psy15524 785 IKLKDCLQNLLSVKMEGDLSRLADGNVETAATALQMSFESAVLQQKILHTSACKGYTSWVRFYASYSKDLRHIFNFKQIH 864 (930)
Q Consensus 785 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~a~~s~~~~y~~~~~~~~~~f~~~~l~ 864 (930)
..... . . ..+...+.+.+.++++....+.++|.+|.++|... |.+...+
T Consensus 468 ~~~~~-------------------~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~ 516 (563)
T 3i5x_A 468 QEKYE-------------------P-S----EEIKSEVLEAVTEEPEDISDIVISLISSYRSCIKE-------YRFSERR 516 (563)
T ss_dssp EEEEC-------------------C-C----HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHTHHH-------HTCCHHH
T ss_pred ccccC-------------------c-c----HHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHH-------hCCChHH
Confidence 21100 0 0 11222333444555554455555555555444322 3344443
Q ss_pred -hHHHHHhcCCC
Q psy15524 865 -LGHFAKSFALR 875 (930)
Q Consensus 865 -~~~~a~sf~l~ 875 (930)
+.++|++||+.
T Consensus 517 ~~~~~~~~~~~l 528 (563)
T 3i5x_A 517 ILPEIASTYGVL 528 (563)
T ss_dssp HHHHHHTHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 67889988863
|
| >2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-52 Score=473.69 Aligned_cols=366 Identities=31% Similarity=0.461 Sum_probs=311.4
Q ss_pred CCCCCCCCCCHHHHHHHHhcCCCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcc---------
Q psy15524 390 TSYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPK--------- 460 (930)
Q Consensus 390 ~~f~~l~~l~~~~~~~l~~~~~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~--------- 460 (930)
.+|+++ ++++.+.++|.+ +||..|||+|.++||.++.|+|++++||||||||++|++|+++.+......
T Consensus 15 ~~f~~~-~l~~~l~~~l~~-~~~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~ 92 (417)
T 2i4i_A 15 ESFSDV-EMGEIIMGNIEL-TRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKEN 92 (417)
T ss_dssp SSGGGS-CCCHHHHHHHHH-HTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHHCCCHHHHHHHHC
T ss_pred CCHhhC-CCCHHHHHHHHH-CCCCCCCHHHHHHHHHHccCCCEEEEcCCCCHHHHHHHHHHHHHHHhccccchhhccccc
Confidence 469999 899999999975 899999999999999999999999999999999999999999988754211
Q ss_pred ---cCCCCCeeEEEEccCHHHHHHHHHHHHHhhccCCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhccCC
Q psy15524 461 ---ISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTET 537 (930)
Q Consensus 461 ---~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~ 537 (930)
..+..++++||++||++|+.|+++.+.+++...+ ..+..+.||.....+...+..+++|+|+||++|.+++.. ..
T Consensus 93 ~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~-~~ 170 (417)
T 2i4i_A 93 GRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSR-VRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMER-GK 170 (417)
T ss_dssp BTTBSCSBCCSEEEECSSHHHHHHHHHHHHHHHTTSS-CCEEEECSSSCHHHHHHHHTTCCSEEEECHHHHHHHHHT-TS
T ss_pred cccccccCCccEEEECCcHHHHHHHHHHHHHHhCcCC-ceEEEEECCCCHHHHHHHhhCCCCEEEEChHHHHHHHHc-CC
Confidence 0122357899999999999999999999876543 456778888888888788888899999999999998876 44
Q ss_pred cccccceEEEEecchhhhhcCcHHHHHHHHHHHhhc-CccceEEEEccccCHHHHHHHhhhcCCCEEEEccCCCCcccCc
Q psy15524 538 LKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQ-KPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTT 616 (930)
Q Consensus 538 ~~~~~l~~lVlDEah~l~~~g~~~~l~~i~~~l~~~-~~~~q~vl~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~ 616 (930)
+.+.+++++|+||||++++++|...+..++...... ....|++++|||+++.+..+....+.++..+......
T Consensus 171 ~~~~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~------ 244 (417)
T 2i4i_A 171 IGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVG------ 244 (417)
T ss_dssp BCCTTCCEEEESSHHHHHHTTCHHHHHHHHTSSSCCCBTTBEEEEEESCCCHHHHHHHHHHCSSCEEEEEC---------
T ss_pred cChhhCcEEEEEChhHhhccCcHHHHHHHHHhccCCCcCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEeCCCC------
Confidence 668899999999999999999999888887643211 1267999999999999999999999988877654321
Q ss_pred cceecCCCceEEEEEcCchhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCH
Q psy15524 617 DSLVIPDSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQ 696 (930)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~ 696 (930)
..+..+.+.+..++...+...+...+.... .+.++||||++++.++.+++.|.+. ++.+..+||+|++
T Consensus 245 ---~~~~~i~~~~~~~~~~~~~~~l~~~l~~~~------~~~~~lVf~~~~~~~~~l~~~L~~~---~~~~~~~h~~~~~ 312 (417)
T 2i4i_A 245 ---STSENITQKVVWVEESDKRSFLLDLLNATG------KDSLTLVFVETKKGADSLEDFLYHE---GYACTSIHGDRSQ 312 (417)
T ss_dssp ----CCSSEEEEEEECCGGGHHHHHHHHHHTCC------TTCEEEEECSSHHHHHHHHHHHHHT---TCCEEEECTTSCH
T ss_pred ---CCccCceEEEEEeccHhHHHHHHHHHHhcC------CCCeEEEEECCHHHHHHHHHHHHHC---CCCeeEecCCCCH
Confidence 233567778888888888888888776531 2679999999999999999999875 7889999999999
Q ss_pred HHHHHHHHHhhcCCCcEEEeccccccccCCCCccEEEEecCCCChhhHHhhhcccccCCCCceEEEEeCcccHHHHHHHH
Q psy15524 697 SERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPSEVKLVEELQ 776 (930)
Q Consensus 697 ~~R~~v~~~F~~~~~~vLv~T~~~~~GlDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~e~~~~~~l~ 776 (930)
.+|..+++.|++|+.+|||||+++++|+|+|++++||++|+|.+..+|+||+||+||.|+.|.+++|+.+.+...++.+.
T Consensus 313 ~~r~~~~~~f~~g~~~vlvaT~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~ 392 (417)
T 2i4i_A 313 RDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLL 392 (417)
T ss_dssp HHHHHHHHHHHHTSSCEEEECHHHHTTSCCCCEEEEEESSCCSSHHHHHHHHTTBCC--CCEEEEEEECGGGGGGHHHHH
T ss_pred HHHHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEEEEcCCCCHHHHHHhcCccccCCCCceEEEEEccccHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999887666654
Q ss_pred h
Q psy15524 777 N 777 (930)
Q Consensus 777 ~ 777 (930)
+
T Consensus 393 ~ 393 (417)
T 2i4i_A 393 D 393 (417)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-51 Score=469.87 Aligned_cols=364 Identities=29% Similarity=0.525 Sum_probs=312.2
Q ss_pred CCCCCCCCCCHHHHHHHHhcCCCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeE
Q psy15524 390 TSYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYA 469 (930)
Q Consensus 390 ~~f~~l~~l~~~~~~~l~~~~~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~ 469 (930)
.+|+++ ++++.+.+.+.+ +||..|+|+|.++++.+++|+|++++||||||||++|++|+++.+.. ...+.++
T Consensus 37 ~~f~~~-~l~~~l~~~l~~-~g~~~~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~------~~~~~~~ 108 (410)
T 2j0s_A 37 PTFDTM-GLREDLLRGIYA-YGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDI------QVRETQA 108 (410)
T ss_dssp CSGGGG-CCCHHHHHHHHH-HTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHTCCT------TSCSCCE
T ss_pred CCHhhc-CCCHHHHHHHHH-cCCCCCCHHHHHHHHHHhCCCCEEEECCCCCCchHHHHHHHHHHHhh------ccCCceE
Confidence 469999 899999999975 89999999999999999999999999999999999999999987643 2346789
Q ss_pred EEEccCHHHHHHHHHHHHHhhccCCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhccCCcccccceEEEEe
Q psy15524 470 VIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLD 549 (930)
Q Consensus 470 lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlD 549 (930)
||++||++|+.|+++.+.+++...+ ..+..+.||.....+...+..+++|+|+|||++.+++.+ ..+.+.+++++|+|
T Consensus 109 lil~Pt~~L~~q~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~ivv~Tp~~l~~~l~~-~~~~~~~~~~vViD 186 (410)
T 2j0s_A 109 LILAPTRELAVQIQKGLLALGDYMN-VQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRR-RSLRTRAIKMLVLD 186 (410)
T ss_dssp EEECSSHHHHHHHHHHHHHHTTTTT-CCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHT-TSSCCTTCCEEEEE
T ss_pred EEEcCcHHHHHHHHHHHHHHhccCC-eEEEEEECCCCHHHHHHHhhcCCCEEEcCHHHHHHHHHh-CCccHhheeEEEEc
Confidence 9999999999999999999876544 456677888888888777888899999999999999876 45667889999999
Q ss_pred cchhhhhcCcHHHHHHHHHHHhhcCccceEEEEccccCHHHHHHHhhhcCCCEEEEccCCCCcccCccceecCCCceEEE
Q psy15524 550 EADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHF 629 (930)
Q Consensus 550 Eah~l~~~g~~~~l~~i~~~l~~~~~~~q~vl~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 629 (930)
|||++.+++|...+..++..++ +..|++++|||+++.+..+....+.+|..+...... ..+..+.+.+
T Consensus 187 Eah~~~~~~~~~~~~~i~~~~~---~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~ 254 (410)
T 2j0s_A 187 EADEMLNKGFKEQIYDVYRYLP---PATQVVLISATLPHEILEMTNKFMTDPIRILVKRDE---------LTLEGIKQFF 254 (410)
T ss_dssp THHHHTSTTTHHHHHHHHTTSC---TTCEEEEEESCCCHHHHTTGGGTCSSCEEECCCGGG---------CSCTTEEEEE
T ss_pred cHHHHHhhhhHHHHHHHHHhCc---cCceEEEEEcCCCHHHHHHHHHHcCCCEEEEecCcc---------ccCCCceEEE
Confidence 9999999999888877765553 478999999999999988888888888877543221 1234566677
Q ss_pred EEcCchh-hHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHHHHHHHHHHhhc
Q psy15524 630 IVTPPKL-RLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRS 708 (930)
Q Consensus 630 ~~~~~~~-~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~v~~~F~~ 708 (930)
..+.... +...+...+.... ..++||||++++.++.+++.|... ++.+..+||+|++.+|..+++.|++
T Consensus 255 ~~~~~~~~k~~~l~~~~~~~~-------~~~~lVf~~~~~~~~~l~~~L~~~---~~~~~~~h~~~~~~~r~~~~~~f~~ 324 (410)
T 2j0s_A 255 VAVEREEWKFDTLCDLYDTLT-------ITQAVIFCNTKRKVDWLTEKMREA---NFTVSSMHGDMPQKERESIMKEFRS 324 (410)
T ss_dssp EEESSTTHHHHHHHHHHHHHT-------SSEEEEECSSHHHHHHHHHHHHHT---TCCCEEECTTSCHHHHHHHHHHHHH
T ss_pred EEeCcHHhHHHHHHHHHHhcC-------CCcEEEEEcCHHHHHHHHHHHHhC---CCceEEeeCCCCHHHHHHHHHHHHC
Confidence 6665544 7777777665431 569999999999999999999875 7788889999999999999999999
Q ss_pred CCCcEEEeccccccccCCCCccEEEEecCCCChhhHHhhhcccccCCCCceEEEEeCcccHHHHHHHHhc-CCccchh
Q psy15524 709 VKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPSEVKLVEELQNR-RIRIEEI 785 (930)
Q Consensus 709 ~~~~vLv~T~~~~~GlDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~e~~~~~~l~~~-~~~~~~~ 785 (930)
|+.+|||||+++++|+|+|++++||++|+|.+...|+||+||+||.|+.|.+++|+.+.+...++.+.+. +..+++.
T Consensus 325 g~~~vlv~T~~~~~Gidi~~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 402 (410)
T 2j0s_A 325 GASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEM 402 (410)
T ss_dssp TSSCEEEECGGGSSSCCCTTEEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEEGGGHHHHHHHHHHTTCCCEEC
T ss_pred CCCCEEEECChhhCcCCcccCCEEEEECCCCCHHHHHHhcccccCCCCceEEEEEecHHHHHHHHHHHHHhCCCceec
Confidence 9999999999999999999999999999999999999999999999999999999999999988888653 4444443
|
| >1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-50 Score=453.82 Aligned_cols=364 Identities=27% Similarity=0.504 Sum_probs=311.8
Q ss_pred CCCCCCCCCCCHHHHHHHHhcCCCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCee
Q psy15524 389 PTSYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIY 468 (930)
Q Consensus 389 ~~~f~~l~~l~~~~~~~l~~~~~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~ 468 (930)
..+|+++ ++++.+.+.|.+ +||..|+|+|.++++.+++|+|+++.||||||||++|++|++..+.. ...+.+
T Consensus 20 ~~~f~~~-~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~~~~~~~~~------~~~~~~ 91 (400)
T 1s2m_A 20 GNTFEDF-YLKRELLMGIFE-AGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKP------KLNKIQ 91 (400)
T ss_dssp -CCGGGG-CCCHHHHHHHHH-TTCCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHCCT------TSCSCC
T ss_pred cCChhhc-CCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHHHHHHHHHhh------ccCCcc
Confidence 3579999 899999999985 89999999999999999999999999999999999999999987643 234678
Q ss_pred EEEEccCHHHHHHHHHHHHHhhccCCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhccCCcccccceEEEE
Q psy15524 469 AVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVL 548 (930)
Q Consensus 469 ~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVl 548 (930)
+||++||++|+.|+++.+.+++...+ ..+....|+.....+...+..+++|+|+||+++.+++.+ ....+.+++++|+
T Consensus 92 ~lil~P~~~L~~q~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~-~~~~~~~~~~vIi 169 (400)
T 1s2m_A 92 ALIMVPTRELALQTSQVVRTLGKHCG-ISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASR-KVADLSDCSLFIM 169 (400)
T ss_dssp EEEECSSHHHHHHHHHHHHHHTTTTT-CCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHT-TCSCCTTCCEEEE
T ss_pred EEEEcCCHHHHHHHHHHHHHHhcccC-ceEEEEeCCcchHHHHHHhcCCCCEEEEchHHHHHHHHh-CCcccccCCEEEE
Confidence 99999999999999999999886544 445667888877776666677899999999999988865 3456789999999
Q ss_pred ecchhhhhcCcHHHHHHHHHHHhhcCccceEEEEccccCHHHHHHHhhhcCCCEEEEccCCCCcccCccceecCCCceEE
Q psy15524 549 DEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQH 628 (930)
Q Consensus 549 DEah~l~~~g~~~~l~~i~~~l~~~~~~~q~vl~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 628 (930)
||||++.+.+|...+..++..++ +..|++++|||++..+..+....+.+|..+..... .....+.+.
T Consensus 170 DEaH~~~~~~~~~~~~~i~~~~~---~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~ 236 (400)
T 1s2m_A 170 DEADKMLSRDFKTIIEQILSFLP---PTHQSLLFSATFPLTVKEFMVKHLHKPYEINLMEE----------LTLKGITQY 236 (400)
T ss_dssp ESHHHHSSHHHHHHHHHHHTTSC---SSCEEEEEESCCCHHHHHHHHHHCSSCEEESCCSS----------CBCTTEEEE
T ss_pred eCchHhhhhchHHHHHHHHHhCC---cCceEEEEEecCCHHHHHHHHHHcCCCeEEEeccc----------cccCCceeE
Confidence 99999998888777777665543 47899999999999999998888888876654322 123456677
Q ss_pred EEEcCchhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHHHHHHHHHHhhc
Q psy15524 629 FIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRS 708 (930)
Q Consensus 629 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~v~~~F~~ 708 (930)
+..+....+...+...+... ..+++||||++++.++.+++.|... ++.+..+||+|++.+|..+++.|++
T Consensus 237 ~~~~~~~~k~~~l~~~~~~~-------~~~~~lVf~~~~~~~~~l~~~L~~~---~~~~~~~~~~~~~~~r~~~~~~f~~ 306 (400)
T 1s2m_A 237 YAFVEERQKLHCLNTLFSKL-------QINQAIIFCNSTNRVELLAKKITDL---GYSCYYSHARMKQQERNKVFHEFRQ 306 (400)
T ss_dssp EEECCGGGHHHHHHHHHHHS-------CCSEEEEECSSHHHHHHHHHHHHHH---TCCEEEECTTSCHHHHHHHHHHHHT
T ss_pred EEEechhhHHHHHHHHHhhc-------CCCcEEEEEecHHHHHHHHHHHHhc---CCCeEEecCCCCHHHHHHHHHHHhc
Confidence 77888888887777776542 2579999999999999999999886 7788899999999999999999999
Q ss_pred CCCcEEEeccccccccCCCCccEEEEecCCCChhhHHhhhcccccCCCCceEEEEeCcccHHHHHHHHhc-CCccchh
Q psy15524 709 VKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPSEVKLVEELQNR-RIRIEEI 785 (930)
Q Consensus 709 ~~~~vLv~T~~~~~GlDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~e~~~~~~l~~~-~~~~~~~ 785 (930)
|+.+|||||+++++|+|+|++++||++++|.+..+|+||+||+||.|+.|.|++|+.+++...++.+.+. +.++++.
T Consensus 307 g~~~vLv~T~~~~~Gidip~~~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~~~~~~~~~ 384 (400)
T 1s2m_A 307 GKVRTLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLINWNDRFNLYKIEQELGTEIAAI 384 (400)
T ss_dssp TSSSEEEESSCSSSSCCCTTEEEEEESSCCSSHHHHHHHHCBSSCTTCCEEEEEEECGGGHHHHHHHHHHHTCCCEEC
T ss_pred CCCcEEEEcCccccCCCccCCCEEEEeCCCCCHHHHHHhcchhcCCCCCceEEEEeccchHHHHHHHHHHhCCCcccc
Confidence 9999999999999999999999999999999999999999999999999999999999999888888763 5555443
|
| >3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-50 Score=456.87 Aligned_cols=359 Identities=25% Similarity=0.445 Sum_probs=302.7
Q ss_pred cCCCCCCCCCCCCCHHHHHHHHhcCCCCCCCHHHHHhHHhhhcC--CcEEEEccCCCchhHHhhHHHHHHHHhhCcccCC
Q psy15524 386 LFAPTSYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDG--GDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISR 463 (930)
Q Consensus 386 ~~~~~~f~~l~~l~~~~~~~l~~~~~~~~~~~iQ~~~i~~il~~--~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~ 463 (930)
+....+|+++ ++++.+.+.|.+ +||..|+|+|.++++.++.+ +|++++||||||||++|++|+++.+.. .
T Consensus 21 ~~~~~~f~~~-~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~------~ 92 (412)
T 3fht_A 21 LYSVKSFEEL-RLKPQLLQGVYA-MGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEP------A 92 (412)
T ss_dssp TCCSSCTGGG-TCCHHHHHHHHH-TTCCSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHHHHCCT------T
T ss_pred ccccCCHhhC-CCCHHHHHHHHH-cCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHHHHHHHHhhh------c
Confidence 3445689999 999999999985 89999999999999999987 899999999999999999999988754 2
Q ss_pred CCCeeEEEEccCHHHHHHHHHHHHHhhccCCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhccCCcccccc
Q psy15524 464 KDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKV 543 (930)
Q Consensus 464 ~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l 543 (930)
..+.++||++||++|+.|+++.+.++...+.........|+....... ..+++|+|+||+++.+++.+...+.+.++
T Consensus 93 ~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ivv~T~~~l~~~~~~~~~~~~~~~ 169 (412)
T 3fht_A 93 NKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ---KISEQIVIGTPGTVLDWCSKLKFIDPKKI 169 (412)
T ss_dssp SCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTCCCCTTC---CCCCSEEEECHHHHHHHHTTSCSSCGGGC
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHHHHhhcccceEEEeecCcchhhhh---cCCCCEEEECchHHHHHHHhcCCcChhhC
Confidence 346689999999999999999999998876666677777776543321 34679999999999999977667778999
Q ss_pred eEEEEecchhhhh-cCcHHHHHHHHHHHhhcCccceEEEEccccCHHHHHHHhhhcCCCEEEEccCCCCcccCccceecC
Q psy15524 544 EHLVLDEADRILD-QGYERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIP 622 (930)
Q Consensus 544 ~~lVlDEah~l~~-~g~~~~l~~i~~~l~~~~~~~q~vl~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 622 (930)
+++|+||||++++ .++...+..+...++ +..|++++|||+++.+..+....+.++..+...... ...
T Consensus 170 ~~iViDEah~~~~~~~~~~~~~~~~~~~~---~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~ 237 (412)
T 3fht_A 170 KVFVLDEADVMIATQGHQDQSIRIQRMLP---RNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREE---------ETL 237 (412)
T ss_dssp CEEEEETHHHHHSTTTTHHHHHHHHHTSC---TTCEEEEEESCCCHHHHHHHHHHSSSCEEECCCGGG---------SSC
T ss_pred cEEEEeCHHHHhhcCCcHHHHHHHHhhCC---CCceEEEEEeecCHHHHHHHHHhcCCCeEEeecccc---------ccc
Confidence 9999999999987 678777776665554 478999999999999999999999998887654332 123
Q ss_pred CCceEEEEEcCc-hhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHHHHHH
Q psy15524 623 DSLKQHFIVTPP-KLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTE 701 (930)
Q Consensus 623 ~~~~~~~~~~~~-~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~ 701 (930)
..+.+.+..+.. ..+...+...+... ..+++||||++++.++.+++.|... ++.+..+||+|++.+|..
T Consensus 238 ~~~~~~~~~~~~~~~~~~~l~~~~~~~-------~~~~~lvf~~~~~~~~~l~~~L~~~---~~~~~~~~~~~~~~~r~~ 307 (412)
T 3fht_A 238 DTIKQYYVLCSSRDEKFQALCNLYGAI-------TIAQAMIFCHTRKTASWLAAELSKE---GHQVALLSGEMMVEQRAA 307 (412)
T ss_dssp TTEEEEEEECSSHHHHHHHHHHHHHHH-------SSSEEEEECSSHHHHHHHHHHHHHT---TCCCEEECTTSCHHHHHH
T ss_pred cCceEEEEEcCChHHHHHHHHHHHhhc-------CCCCEEEEeCCHHHHHHHHHHHHhC---CCeEEEecCCCCHHHHHH
Confidence 456666666655 45566666555432 1579999999999999999999885 778888999999999999
Q ss_pred HHHHhhcCCCcEEEeccccccccCCCCccEEEEecCC------CChhhHHhhhcccccCCCCceEEEEeCccc-HHHHHH
Q psy15524 702 VFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAP------SSSTDYVHRVGRTARVGHEGSSLLFLIPSE-VKLVEE 774 (930)
Q Consensus 702 v~~~F~~~~~~vLv~T~~~~~GlDip~v~~VI~~~~p------~s~~~y~qr~GRagR~g~~g~~~~~~~~~e-~~~~~~ 774 (930)
+++.|++|+.+|||||+++++|+|+|++++||++|+| .+..+|+||+||+||.|+.|.+++++.+.+ ..+++.
T Consensus 308 ~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~ 387 (412)
T 3fht_A 308 VIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNR 387 (412)
T ss_dssp HHHHHHTTSCSEEEECGGGTSSCCCTTEEEEEESSCCBCSSSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHHHHH
T ss_pred HHHHHHCCCCcEEEEcCccccCCCccCCCEEEEECCCCCCCCCcchheeecccCcccCCCCCceEEEEEcChhhHHHHHH
Confidence 9999999999999999999999999999999999999 567899999999999999999999999765 667777
Q ss_pred HHh
Q psy15524 775 LQN 777 (930)
Q Consensus 775 l~~ 777 (930)
+++
T Consensus 388 i~~ 390 (412)
T 3fht_A 388 IQE 390 (412)
T ss_dssp HHH
T ss_pred HHH
Confidence 765
|
| >1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-49 Score=450.64 Aligned_cols=368 Identities=25% Similarity=0.468 Sum_probs=311.4
Q ss_pred CCCCCCCCCCCHHHHHHHHhcCCCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCee
Q psy15524 389 PTSYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIY 468 (930)
Q Consensus 389 ~~~f~~l~~l~~~~~~~l~~~~~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~ 468 (930)
..+|+++ ++++.+.+.|.+ +||..|+|+|.++++.++.|+|+++.||||+|||++|++|++..+.. ...+.+
T Consensus 7 ~~~f~~~-~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~------~~~~~~ 78 (391)
T 1xti_A 7 SSGFRDF-LLKPELLRAIVD-CGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEP------VTGQVS 78 (391)
T ss_dssp --CGGGG-CCCHHHHHHHHH-HSCCSCCHHHHHHHHHHTTTCCEEEECSSCSSHHHHHHHHHHHHCCC------CTTCCC
T ss_pred CCChhhc-CCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHhhcc------cCCCee
Confidence 3579999 999999999985 89999999999999999999999999999999999999999987643 234678
Q ss_pred EEEEccCHHHHHHHHHHHHHhhccCCCcceEEEeCCCchHHHHHHHhc-CCcEEEECchhHHHhhhccCCcccccceEEE
Q psy15524 469 AVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRK-GISILVATPGRLLDHCKHTETLKFSKVEHLV 547 (930)
Q Consensus 469 ~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~-~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lV 547 (930)
+||++||++|+.|+++.+.++....+...+..+.||.........+.. .++|+|+||+++.+++.. ....+.+++++|
T Consensus 79 ~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~-~~~~~~~~~~vV 157 (391)
T 1xti_A 79 VLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARN-KSLNLKHIKHFI 157 (391)
T ss_dssp EEEECSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHHHHHSCCSEEEECHHHHHHHHHT-TSSCCTTCSEEE
T ss_pred EEEECCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHHHhcCCCCEEEECHHHHHHHHHc-CCccccccCEEE
Confidence 999999999999999999999877656677888888877766666654 479999999999998876 445688999999
Q ss_pred Eecchhhhhc-CcHHHHHHHHHHHhhcCccceEEEEccccCHHHHHHHhhhcCCCEEEEccCCCCcccCccceecCCCce
Q psy15524 548 LDEADRILDQ-GYERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLK 626 (930)
Q Consensus 548 lDEah~l~~~-g~~~~l~~i~~~l~~~~~~~q~vl~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 626 (930)
+||||++.++ ++...+..++..+ +...|++++|||+++.+..+....+.+|..+....... .....+.
T Consensus 158 iDEaH~~~~~~~~~~~~~~~~~~~---~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~ 226 (391)
T 1xti_A 158 LDECDKMLEQLDMRRDVQEIFRMT---PHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETK--------LTLHGLQ 226 (391)
T ss_dssp ECSHHHHTSSHHHHHHHHHHHHTS---CSSSEEEEEESSCCSTHHHHHHHHCSSCEEEECCCCCC--------CCCTTCE
T ss_pred EeCHHHHhhccchHHHHHHHHhhC---CCCceEEEEEeeCCHHHHHHHHHHcCCCeEEEecCccc--------cCcccce
Confidence 9999999874 6666666665444 34789999999999999999999999888776543321 1234567
Q ss_pred EEEEEcCchhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHHHHHHHHHHh
Q psy15524 627 QHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTF 706 (930)
Q Consensus 627 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~v~~~F 706 (930)
+.+..+....+...+...+... ..+++||||++++.++.+++.|... ++.+..+||+|++.+|..+++.|
T Consensus 227 ~~~~~~~~~~~~~~l~~~l~~~-------~~~~~lvf~~~~~~~~~l~~~L~~~---~~~~~~~~~~~~~~~r~~~~~~f 296 (391)
T 1xti_A 227 QYYVKLKDNEKNRKLFDLLDVL-------EFNQVVIFVKSVQRCIALAQLLVEQ---NFPAIAIHRGMPQEERLSRYQQF 296 (391)
T ss_dssp EEEEECCGGGHHHHHHHHHHHS-------CCSEEEEECSCHHHHHHHHHHHHHT---TCCEEEECTTSCHHHHHHHHHHH
T ss_pred EEEEEcCchhHHHHHHHHHHhc-------CCCcEEEEeCcHHHHHHHHHHHHhC---CCcEEEEeCCCCHHHHHHHHHHH
Confidence 7788888888888888777653 2679999999999999999999875 78888999999999999999999
Q ss_pred hcCCCcEEEeccccccccCCCCccEEEEecCCCChhhHHhhhcccccCCCCceEEEEeCccc-HHHHHHHHhc-CCccch
Q psy15524 707 RSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPSE-VKLVEELQNR-RIRIEE 784 (930)
Q Consensus 707 ~~~~~~vLv~T~~~~~GlDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~e-~~~~~~l~~~-~~~~~~ 784 (930)
++|+.+|||||+++++|+|+|++++||++++|.+..+|+||+||+||.|+.|.+++|+.+.+ ..+++.+.+. ++++++
T Consensus 297 ~~~~~~vlv~T~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (391)
T 1xti_A 297 KDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISE 376 (391)
T ss_dssp HTTCCSEEEESCCCSSCBCCTTEEEEEESSCCSSHHHHHHHHCBCSSSCCCCEEEEEECSHHHHHHHHHHHHHTTCCCEE
T ss_pred hcCCCcEEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHhcccccCCCCceEEEEEEcccchHHHHHHHHHHhcCChhh
Confidence 99999999999999999999999999999999999999999999999999999999999864 4577777653 555554
Q ss_pred hc
Q psy15524 785 IK 786 (930)
Q Consensus 785 ~~ 786 (930)
.+
T Consensus 377 ~~ 378 (391)
T 1xti_A 377 LP 378 (391)
T ss_dssp CC
T ss_pred CC
Confidence 43
|
| >3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.5e-50 Score=455.24 Aligned_cols=363 Identities=27% Similarity=0.495 Sum_probs=294.6
Q ss_pred CCCCCCCCCCHHHHHHHHhcCCCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeE
Q psy15524 390 TSYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYA 469 (930)
Q Consensus 390 ~~f~~l~~l~~~~~~~l~~~~~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~ 469 (930)
.+|+++ ++++.+.+.+.+ +||..|+++|.++++.++.|+|+++.||||||||++|++|+++.+.. ...+.++
T Consensus 40 ~~f~~~-~l~~~~~~~l~~-~~~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~------~~~~~~~ 111 (414)
T 3eiq_A 40 DSFDDM-NLSESLLRGIYA-YGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIEL------DLKATQA 111 (414)
T ss_dssp CCGGGG-CCCHHHHHHHHH-TTCCSCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHHHHHHHHCCT------TSCSCCE
T ss_pred cCHhhC-CCCHHHHHHHHH-cCCCCCCHHHHHHhHHHhCCCCEEEECCCCCcccHHHHHHHHHHHhh------cCCceeE
Confidence 568898 899999999985 89999999999999999999999999999999999999999988754 2346789
Q ss_pred EEEccCHHHHHHHHHHHHHhhccCCCcceEEEeCCCchHHHHHHHh-cCCcEEEECchhHHHhhhccCCcccccceEEEE
Q psy15524 470 VIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIR-KGISILVATPGRLLDHCKHTETLKFSKVEHLVL 548 (930)
Q Consensus 470 lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~-~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVl 548 (930)
||++||++|+.|+++.+.+++...+ .......||.........+. .+++|+|+||++|.+++.+ ..+.+.++++||+
T Consensus 112 lil~P~~~L~~q~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~-~~~~~~~~~~vVi 189 (414)
T 3eiq_A 112 LVLAPTRELAQQIQKVVMALGDYMG-ASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNR-RYLSPKYIKMFVL 189 (414)
T ss_dssp EEECSSHHHHHHHHHHHHHHGGGSC-CCEEECCCCTTHHHHHHHHTTTCCSEEEECHHHHHHHHHH-TSSCSTTCCEEEE
T ss_pred EEEeChHHHHHHHHHHHHHHhcccC-ceEEEEECCcchHHHHHHHhcCCCCEEEECHHHHHHHHHc-CCcccccCcEEEE
Confidence 9999999999999999999886554 44566778877776666665 6789999999999998876 4566788999999
Q ss_pred ecchhhhhcCcHHHHHHHHHHHhhcCccceEEEEccccCHHHHHHHhhhcCCCEEEEccCCCCcccCccceecCCCceEE
Q psy15524 549 DEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQH 628 (930)
Q Consensus 549 DEah~l~~~g~~~~l~~i~~~l~~~~~~~q~vl~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 628 (930)
||||++.+++|...+..++..++ +..|++++|||+++.+..+....+.++..+...... ..+..+.+.
T Consensus 190 DEah~~~~~~~~~~~~~~~~~~~---~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~ 257 (414)
T 3eiq_A 190 DEADEMLSRGFKDQIYDIFQKLN---SNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEE---------LTLEGIRQF 257 (414)
T ss_dssp CSHHHHHHTTTHHHHHHHHTTSC---TTCEEEEECSCCCHHHHHHHTTTCSSCEEECCCCCC---------CCTTSCCEE
T ss_pred ECHHHhhccCcHHHHHHHHHhCC---CCCeEEEEEEecCHHHHHHHHHHcCCCEEEEecCCc---------cCCCCceEE
Confidence 99999999999888877765554 488999999999999999999999998877654332 123445666
Q ss_pred EEEcCchh-hHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHHHHHHHHHHhh
Q psy15524 629 FIVTPPKL-RLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFR 707 (930)
Q Consensus 629 ~~~~~~~~-~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~v~~~F~ 707 (930)
+..+.... +...+...+... ..+++||||++++.++.+++.|... ++.+..+||+|++.+|..+++.|+
T Consensus 258 ~~~~~~~~~~~~~l~~~~~~~-------~~~~~lvf~~~~~~~~~l~~~l~~~---~~~~~~~h~~~~~~~r~~~~~~f~ 327 (414)
T 3eiq_A 258 YINVEREEWKLDTLCDLYETL-------TITQAVIFINTRRKVDWLTEKMHAR---DFTVSAMHGDMDQKERDVIMREFR 327 (414)
T ss_dssp EEECSSSTTHHHHHHHHHHSS-------CCSSCEEECSCHHHHHHHHHHHHTT---TCCCEEC---CHHHHHHHHHHHHS
T ss_pred EEEeChHHhHHHHHHHHHHhC-------CCCcEEEEeCCHHHHHHHHHHHHhc---CCeEEEecCCCCHHHHHHHHHHHH
Confidence 66665544 666666666542 2569999999999999999999875 788889999999999999999999
Q ss_pred cCCCcEEEeccccccccCCCCccEEEEecCCCChhhHHhhhcccccCCCCceEEEEeCcccHHHHHHHHhc-CCccch
Q psy15524 708 SVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPSEVKLVEELQNR-RIRIEE 784 (930)
Q Consensus 708 ~~~~~vLv~T~~~~~GlDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~e~~~~~~l~~~-~~~~~~ 784 (930)
+|+.+|||||+++++|+|+|++++||+++.|.+..+|+||+||+||.|++|.|++|+.+.+...++.+.+. +..+++
T Consensus 328 ~g~~~vlv~T~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (414)
T 3eiq_A 328 SGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDIETFYNTSIEE 405 (414)
T ss_dssp CC---CEEECSSCC--CCGGGCSCEEESSCCSSTHHHHHHSCCC-------CEEEEECSTHHHHHHHHHHHTTCCCEE
T ss_pred cCCCcEEEECCccccCCCccCCCEEEEeCCCCCHHHhhhhcCcccCCCCCceEEEEEcHHHHHHHHHHHHHHcCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999988888653 334433
|
| >3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-51 Score=478.15 Aligned_cols=359 Identities=25% Similarity=0.448 Sum_probs=175.5
Q ss_pred cCCCCCCCCCCCCCHHHHHHHHhcCCCCCCCHHHHHhHHhhhcC--CcEEEEccCCCchhHHhhHHHHHHHHhhCcccCC
Q psy15524 386 LFAPTSYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDG--GDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISR 463 (930)
Q Consensus 386 ~~~~~~f~~l~~l~~~~~~~l~~~~~~~~~~~iQ~~~i~~il~~--~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~ 463 (930)
.....+|+++ +|++.+.+.|.+ +||..|+|+|.+++|.++.+ +|++++||||||||++|++|+++.+.. .
T Consensus 88 ~~~~~~f~~~-~l~~~l~~~l~~-~g~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l~~------~ 159 (479)
T 3fmp_B 88 LYSVKSFEEL-RLKPQLLQGVYA-MGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEP------A 159 (479)
T ss_dssp CCCCCCSGGG-TCCHHHHHHHHH-TTCCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTCCT------T
T ss_pred ccCcCCHHHc-CCCHHHHHHHHH-cCCCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHHHHhh------c
Confidence 3445679999 899999999985 89999999999999999987 899999999999999999999987653 2
Q ss_pred CCCeeEEEEccCHHHHHHHHHHHHHhhccCCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhccCCcccccc
Q psy15524 464 KDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKV 543 (930)
Q Consensus 464 ~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l 543 (930)
..++++|||+||++|+.|+++.+.++.............++....... ..+.+|+|+|||+|.+++.+...+.+.++
T Consensus 160 ~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~ 236 (479)
T 3fmp_B 160 NKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ---KISEQIVIGTPGTVLDWCSKLKFIDPKKI 236 (479)
T ss_dssp SCSCCEEEECSSHHHHHHHHHHHHHHHTTSTTCCEEEESTTCCCCTTC---CCCCSEEEECHHHHHHHHTTSCCCCGGGC
T ss_pred CCCCcEEEEeChHHHHHHHHHHHHHHHhhCCCceEEEEeCCccccccc---cCCCCEEEECchHHHHHHHhcCCcCcccC
Confidence 345689999999999999999999998776666667777765443221 34679999999999999987677788999
Q ss_pred eEEEEecchhhhh-cCcHHHHHHHHHHHhhcCccceEEEEccccCHHHHHHHhhhcCCCEEEEccCCCCcccCccceecC
Q psy15524 544 EHLVLDEADRILD-QGYERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIP 622 (930)
Q Consensus 544 ~~lVlDEah~l~~-~g~~~~l~~i~~~l~~~~~~~q~vl~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 622 (930)
++||+||||++++ .++...+..+...++ ..+|++++|||+++.+..++...+.+|..+....... ..
T Consensus 237 ~~iViDEah~~~~~~~~~~~~~~i~~~~~---~~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~---------~~ 304 (479)
T 3fmp_B 237 KVFVLDEADVMIATQGHQDQSIRIQRMLP---RNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEE---------TL 304 (479)
T ss_dssp CEEEECCHHHHHTSTTHHHHHHHHHTTSC---TTSEEEEEESCCCHHHHHHHHHHSSSEEEEEEC---------------
T ss_pred CEEEEECHHHHhhcCCcHHHHHHHHhhCC---ccceEEEEeCCCCHHHHHHHHHHcCCCeEEecccccc---------Cc
Confidence 9999999999987 577776666655543 4789999999999999999999999998887654321 22
Q ss_pred CCceEEEEEcCc-hhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHHHHHH
Q psy15524 623 DSLKQHFIVTPP-KLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTE 701 (930)
Q Consensus 623 ~~~~~~~~~~~~-~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~ 701 (930)
..+.+.+..+.. ..+...+...+... ...++||||++++.++.+++.|... ++.+..+||+|++.+|..
T Consensus 305 ~~~~~~~~~~~~~~~~~~~l~~~~~~~-------~~~~~lvF~~s~~~~~~l~~~L~~~---~~~v~~lh~~~~~~~R~~ 374 (479)
T 3fmp_B 305 DTIKQYYVLCSSRDEKFQALCNLYGAI-------TIAQAMIFCHTRKTASWLAAELSKE---GHQVALLSGEMMVEQRAA 374 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCceEEEEEeCCHHHHHHHHHHHHhhc-------cCCceEEEeCcHHHHHHHHHHHHhC---CccEEEecCCCCHHHHHH
Confidence 345555555544 34444444443321 2579999999999999999999875 778888999999999999
Q ss_pred HHHHhhcCCCcEEEeccccccccCCCCccEEEEecCCC------ChhhHHhhhcccccCCCCceEEEEeCccc-HHHHHH
Q psy15524 702 VFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPS------SSTDYVHRVGRTARVGHEGSSLLFLIPSE-VKLVEE 774 (930)
Q Consensus 702 v~~~F~~~~~~vLv~T~~~~~GlDip~v~~VI~~~~p~------s~~~y~qr~GRagR~g~~g~~~~~~~~~e-~~~~~~ 774 (930)
+++.|++|+.+|||||+++++|+|+|++++||+||+|. +..+|+||+|||||.|+.|.+++|+.+.+ ..+++.
T Consensus 375 ~~~~f~~g~~~iLv~T~~~~~GlDip~v~~VI~~d~p~~~~~~~s~~~~~Qr~GRagR~g~~G~~i~~~~~~~~~~~~~~ 454 (479)
T 3fmp_B 375 VIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNR 454 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHcCCCcEEEEccccccCCccccCCEEEEecCCCCCccCCCHHHHHHHhcccccCCCCceEEEEEcCcchHHHHHH
Confidence 99999999999999999999999999999999999994 67899999999999999999999998765 567776
Q ss_pred HHh
Q psy15524 775 LQN 777 (930)
Q Consensus 775 l~~ 777 (930)
+.+
T Consensus 455 i~~ 457 (479)
T 3fmp_B 455 IQE 457 (479)
T ss_dssp ---
T ss_pred HHH
Confidence 654
|
| >1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-48 Score=437.41 Aligned_cols=356 Identities=28% Similarity=0.488 Sum_probs=306.2
Q ss_pred CCCCCCCCCCHHHHHHHHhcCCCCCCCHHHHHhHHhhhcC-CcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCee
Q psy15524 390 TSYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDG-GDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIY 468 (930)
Q Consensus 390 ~~f~~l~~l~~~~~~~l~~~~~~~~~~~iQ~~~i~~il~~-~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~ 468 (930)
.+|+++ ++++.+.+.|.+ +||..|+|+|.++++.++++ +++++.+|||||||++|++|+++.+.. ..+.+
T Consensus 6 ~~f~~~-~l~~~~~~~l~~-~g~~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~-------~~~~~ 76 (367)
T 1hv8_A 6 MNFNEL-NLSDNILNAIRN-KGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNE-------NNGIE 76 (367)
T ss_dssp CCGGGS-SCCHHHHHHHHH-HTCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCS-------SSSCC
T ss_pred Cchhhc-CCCHHHHHHHHH-cCCCCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhcc-------cCCCc
Confidence 579999 899999999985 89999999999999999988 699999999999999999999987643 35778
Q ss_pred EEEEccCHHHHHHHHHHHHHhhccCCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhccCCcccccceEEEE
Q psy15524 469 AVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVL 548 (930)
Q Consensus 469 ~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVl 548 (930)
+||++||++|+.|+++.+.+++.... .....+.||.........+. +++|+|+||+++.+++.. ....+.+++++|+
T Consensus 77 ~lil~P~~~L~~q~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~-~~~iiv~T~~~l~~~~~~-~~~~~~~~~~iIi 153 (367)
T 1hv8_A 77 AIILTPTRELAIQVADEIESLKGNKN-LKIAKIYGGKAIYPQIKALK-NANIVVGTPGRILDHINR-GTLNLKNVKYFIL 153 (367)
T ss_dssp EEEECSCHHHHHHHHHHHHHHHCSSC-CCEEEECTTSCHHHHHHHHH-TCSEEEECHHHHHHHHHT-TCSCTTSCCEEEE
T ss_pred EEEEcCCHHHHHHHHHHHHHHhCCCC-ceEEEEECCcchHHHHhhcC-CCCEEEecHHHHHHHHHc-CCcccccCCEEEE
Confidence 99999999999999999999886543 44566778877666555544 789999999999988876 4456789999999
Q ss_pred ecchhhhhcCcHHHHHHHHHHHhhcCccceEEEEccccCHHHHHHHhhhcCCCEEEEccCCCCcccCccceecCCCceEE
Q psy15524 549 DEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQH 628 (930)
Q Consensus 549 DEah~l~~~g~~~~l~~i~~~l~~~~~~~q~vl~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 628 (930)
||||++.+++|...+..++..++ +..+++++|||+++....+....+.++..+.... ...+.+.
T Consensus 154 DEah~~~~~~~~~~~~~~~~~~~---~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~ 217 (367)
T 1hv8_A 154 DEADEMLNMGFIKDVEKILNACN---KDKRILLFSATMPREILNLAKKYMGDYSFIKAKI-------------NANIEQS 217 (367)
T ss_dssp ETHHHHHTTTTHHHHHHHHHTSC---SSCEEEEECSSCCHHHHHHHHHHCCSEEEEECCS-------------SSSSEEE
T ss_pred eCchHhhhhchHHHHHHHHHhCC---CCceEEEEeeccCHHHHHHHHHHcCCCeEEEecC-------------CCCceEE
Confidence 99999999999887777765543 4789999999999998888888888776665432 2346677
Q ss_pred EEEcCchhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHHHHHHHHHHhhc
Q psy15524 629 FIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRS 708 (930)
Q Consensus 629 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~v~~~F~~ 708 (930)
+..+....+...+...+.. .+.++||||++.+.++.+++.|... ++.+..+||++++.+|..+++.|++
T Consensus 218 ~~~~~~~~~~~~l~~~l~~--------~~~~~lvf~~~~~~~~~l~~~L~~~---~~~~~~~~~~~~~~~r~~~~~~f~~ 286 (367)
T 1hv8_A 218 YVEVNENERFEALCRLLKN--------KEFYGLVFCKTKRDTKELASMLRDI---GFKAGAIHGDLSQSQREKVIRLFKQ 286 (367)
T ss_dssp EEECCGGGHHHHHHHHHCS--------TTCCEEEECSSHHHHHHHHHHHHHT---TCCEEEECSSSCHHHHHHHHHHHHT
T ss_pred EEEeChHHHHHHHHHHHhc--------CCCcEEEEECCHHHHHHHHHHHHhc---CCCeEEeeCCCCHHHHHHHHHHHHc
Confidence 7788888888887777652 2679999999999999999999875 7788899999999999999999999
Q ss_pred CCCcEEEeccccccccCCCCccEEEEecCCCChhhHHhhhcccccCCCCceEEEEeCcccHHHHHHHHhc-CCccch
Q psy15524 709 VKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPSEVKLVEELQNR-RIRIEE 784 (930)
Q Consensus 709 ~~~~vLv~T~~~~~GlDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~e~~~~~~l~~~-~~~~~~ 784 (930)
|+.+|||||+++++|+|+|++++||++++|.++.+|+||+||+||.|++|.+++++.++|...++.+.+. +..+++
T Consensus 287 ~~~~vlv~T~~~~~Gid~~~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~ 363 (367)
T 1hv8_A 287 KKIRILIATDVMSRGIDVNDLNCVINYHLPQNPESYMHRIGRTGRAGKKGKAISIINRREYKKLRYIERAMKLKIKK 363 (367)
T ss_dssp TSSSEEEECTTHHHHCCCSCCSEEEESSCCSCHHHHHHHSTTTCCSSSCCEEEEEECTTSHHHHHHHHHHHTCCCCC
T ss_pred CCCeEEEECChhhcCCCcccCCEEEEecCCCCHHHhhhcccccccCCCccEEEEEEcHHHHHHHHHHHHHhCCCCce
Confidence 9999999999999999999999999999999999999999999999999999999999999988888663 444443
|
| >3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-48 Score=436.94 Aligned_cols=352 Identities=28% Similarity=0.475 Sum_probs=290.7
Q ss_pred CCCCCCCCCCHHHHHHHHhcCCCCCCCHHHHHhHHhhhcC--CcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCe
Q psy15524 390 TSYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDG--GDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGI 467 (930)
Q Consensus 390 ~~f~~l~~l~~~~~~~l~~~~~~~~~~~iQ~~~i~~il~~--~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~ 467 (930)
.+|+++ ++++.+.+.+.+ +||..|+|+|.++++.++.+ ++++++||||||||++|++|++..+.. ...+.
T Consensus 5 ~~f~~~-~l~~~l~~~l~~-~~~~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~------~~~~~ 76 (395)
T 3pey_A 5 KSFDEL-GLAPELLKGIYA-MKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNP------EDASP 76 (395)
T ss_dssp CSSTTS-CCCHHHHHHHHH-TTCCSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHHHHHCCT------TCCSC
T ss_pred cCHhhC-CCCHHHHHHHHH-CCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHhcc------CCCCc
Confidence 579999 999999999985 89999999999999999998 899999999999999999999987653 23567
Q ss_pred eEEEEccCHHHHHHHHHHHHHhhccCCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhccCCcccccceEEE
Q psy15524 468 YAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLV 547 (930)
Q Consensus 468 ~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lV 547 (930)
++||++||++|+.|+++.+.+++.... .......|+...... ..+++|+|+||+++.+++.+ ....+.+++++|
T Consensus 77 ~~lil~P~~~L~~q~~~~~~~~~~~~~-~~~~~~~~~~~~~~~----~~~~~iiv~T~~~l~~~~~~-~~~~~~~~~~iI 150 (395)
T 3pey_A 77 QAICLAPSRELARQTLEVVQEMGKFTK-ITSQLIVPDSFEKNK----QINAQVIVGTPGTVLDLMRR-KLMQLQKIKIFV 150 (395)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTSC-CCEEEESTTSSCTTS----CBCCSEEEECHHHHHHHHHT-TCBCCTTCCEEE
T ss_pred cEEEECCCHHHHHHHHHHHHHHhcccC-eeEEEEecCchhhhc----cCCCCEEEEcHHHHHHHHHc-CCcccccCCEEE
Confidence 899999999999999999999876544 344555555432221 24689999999999998876 455688999999
Q ss_pred Eecchhhhh-cCcHHHHHHHHHHHhhcCccceEEEEccccCHHHHHHHhhhcCCCEEEEccCCCCcccCccceecCCCce
Q psy15524 548 LDEADRILD-QGYERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLK 626 (930)
Q Consensus 548 lDEah~l~~-~g~~~~l~~i~~~l~~~~~~~q~vl~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 626 (930)
+||||++.+ .++...+..+...++ +..|++++|||+++.+..+....+.++..+...... .....+.
T Consensus 151 iDEah~~~~~~~~~~~~~~~~~~~~---~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~ 218 (395)
T 3pey_A 151 LDEADNMLDQQGLGDQCIRVKRFLP---KDTQLVLFSATFADAVRQYAKKIVPNANTLELQTNE---------VNVDAIK 218 (395)
T ss_dssp EETHHHHHHSTTHHHHHHHHHHTSC---TTCEEEEEESCCCHHHHHHHHHHSCSCEEECCCGGG---------CSCTTEE
T ss_pred EEChhhhcCccccHHHHHHHHHhCC---CCcEEEEEEecCCHHHHHHHHHhCCCCeEEEccccc---------ccccccc
Confidence 999999988 677777776665554 478999999999999999999988888776553321 1224455
Q ss_pred EEEEEcCc-hhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHHHHHHHHHH
Q psy15524 627 QHFIVTPP-KLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKT 705 (930)
Q Consensus 627 ~~~~~~~~-~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~v~~~ 705 (930)
+.+..+.. ..+...+...+... ..+++||||++++.++.+++.|... ++.+..+||+|++.+|..+++.
T Consensus 219 ~~~~~~~~~~~~~~~l~~~~~~~-------~~~~~lvf~~~~~~~~~l~~~l~~~---~~~~~~~~~~~~~~~r~~~~~~ 288 (395)
T 3pey_A 219 QLYMDCKNEADKFDVLTELYGLM-------TIGSSIIFVATKKTANVLYGKLKSE---GHEVSILHGDLQTQERDRLIDD 288 (395)
T ss_dssp EEEEECSSHHHHHHHHHHHHTTT-------TSSEEEEECSCHHHHHHHHHHHHHT---TCCCEEECTTSCHHHHHHHHHH
T ss_pred EEEEEcCchHHHHHHHHHHHHhc-------cCCCEEEEeCCHHHHHHHHHHHHhc---CCcEEEeCCCCCHHHHHHHHHH
Confidence 66666544 34544444444321 2679999999999999999999875 7788889999999999999999
Q ss_pred hhcCCCcEEEeccccccccCCCCccEEEEecCCC------ChhhHHhhhcccccCCCCceEEEEeCccc-HHHHHHHHh
Q psy15524 706 FRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPS------SSTDYVHRVGRTARVGHEGSSLLFLIPSE-VKLVEELQN 777 (930)
Q Consensus 706 F~~~~~~vLv~T~~~~~GlDip~v~~VI~~~~p~------s~~~y~qr~GRagR~g~~g~~~~~~~~~e-~~~~~~l~~ 777 (930)
|++|+.+|||||+++++|+|+|++++||++|+|. ++.+|+||+||+||.|+.|.+++|+.+.+ ..+++.+++
T Consensus 289 f~~g~~~vlv~T~~~~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~i~~ 367 (395)
T 3pey_A 289 FREGRSKVLITTNVLARGIDIPTVSMVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGVAISFVHDKNSFNILSAIQK 367 (395)
T ss_dssp HHTTSCCEEEECGGGSSSCCCTTEEEEEESSCCBCTTSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHHHHHHHH
T ss_pred HHCCCCCEEEECChhhcCCCcccCCEEEEcCCCCCCcCCCCHHHhhHhccccccCCCCceEEEEEechHHHHHHHHHHH
Confidence 9999999999999999999999999999999998 99999999999999999999999998754 456666655
|
| >1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-49 Score=446.63 Aligned_cols=355 Identities=27% Similarity=0.491 Sum_probs=175.1
Q ss_pred CCCCCCCCCCHHHHHHHHhcCCCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeE
Q psy15524 390 TSYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYA 469 (930)
Q Consensus 390 ~~f~~l~~l~~~~~~~l~~~~~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~ 469 (930)
.+|+++ ++++.+.+.+.+ +||..|+|+|.++++.++.|+|+++.||||+|||++|++|+++.+.. ...+.++
T Consensus 21 ~~f~~~-~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~l~~------~~~~~~~ 92 (394)
T 1fuu_A 21 YKFDDM-ELDENLLRGVFG-YGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDT------SVKAPQA 92 (394)
T ss_dssp CSSGGG-CCCHHHHHHHHH-HTCCSCCHHHHHHHHHHHHTCCEEECCCSSHHHHHHHHHHHHHHCCT------TCCSCCE
T ss_pred CChhhc-CCCHHHHHHHHH-cCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhhc------cCCCCCE
Confidence 469999 899999999985 89999999999999999999999999999999999999999987654 2346789
Q ss_pred EEEccCHHHHHHHHHHHHHhhccCCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhccCCcccccceEEEEe
Q psy15524 470 VIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLD 549 (930)
Q Consensus 470 lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlD 549 (930)
||++||++|+.|+++.+.++....+ ..+..+.|+.........+. +++|+|+||+++.+.+.+ ....+.+++++|+|
T Consensus 93 lil~P~~~L~~q~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~-~~~i~v~T~~~l~~~~~~-~~~~~~~~~~vIiD 169 (394)
T 1fuu_A 93 LMLAPTRELALQIQKVVMALAFHMD-IKVHACIGGTSFVEDAEGLR-DAQIVVGTPGRVFDNIQR-RRFRTDKIKMFILD 169 (394)
T ss_dssp EEECSSHHHHHHHHHHHHHHTTTSC-CCEEEECSSCCHHHHHHHHH-HCSEEEECHHHHHHHHHT-TSSCCTTCCEEEEE
T ss_pred EEEcCCHHHHHHHHHHHHHHhccCC-eeEEEEeCCCchHHHHhhcC-CCCEEEECHHHHHHHHHh-CCcchhhCcEEEEE
Confidence 9999999999999999999876544 44566778877655544443 689999999999988876 44567889999999
Q ss_pred cchhhhhcCcHHHHHHHHHHHhhcCccceEEEEccccCHHHHHHHhhhcCCCEEEEccCCCCcccCccceecCCCceEEE
Q psy15524 550 EADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHF 629 (930)
Q Consensus 550 Eah~l~~~g~~~~l~~i~~~l~~~~~~~q~vl~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 629 (930)
|||++.++++...+..++..++ +..|++++|||+++.+..+....+.+|..+....... .+..+.+.+
T Consensus 170 Eah~~~~~~~~~~~~~~~~~~~---~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~ 237 (394)
T 1fuu_A 170 EADEMLSSGFKEQIYQIFTLLP---PTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKKDEL---------TLEGIKQFY 237 (394)
T ss_dssp THHHHHHTTCHHHHHHHHHHSC---TTCEEEEECSSCCHHHHHHHHHHCCSCEEEEECC---------------------
T ss_pred ChHHhhCCCcHHHHHHHHHhCC---CCceEEEEEEecCHHHHHHHHHhcCCCeEEEecCccc---------cCCCceEEE
Confidence 9999999999988888877664 4789999999999999999888888888776543221 112333444
Q ss_pred EEcCchh-hHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHHHHHHHHHHhhc
Q psy15524 630 IVTPPKL-RLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRS 708 (930)
Q Consensus 630 ~~~~~~~-~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~v~~~F~~ 708 (930)
..+.... +...+...+... ..+++||||++++.++.+++.|... ++.+..+||+|++.+|..+++.|++
T Consensus 238 ~~~~~~~~~~~~l~~~~~~~-------~~~~~lVf~~~~~~~~~l~~~L~~~---~~~~~~~~~~~~~~~r~~~~~~f~~ 307 (394)
T 1fuu_A 238 VNVEEEEYKYECLTDLYDSI-------SVTQAVIFCNTRRKVEELTTKLRND---KFTVSAIYSDLPQQERDTIMKEFRS 307 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEcCchhhHHHHHHHHHhcC-------CCCcEEEEECCHHHHHHHHHHHHHc---CCeEEEeeCCCCHHHHHHHHHHHHC
Confidence 3333332 444444443321 2579999999999999999999874 7788889999999999999999999
Q ss_pred CCCcEEEeccccccccCCCCccEEEEecCCCChhhHHhhhcccccCCCCceEEEEeCcccHHHHHHHHh
Q psy15524 709 VKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPSEVKLVEELQN 777 (930)
Q Consensus 709 ~~~~vLv~T~~~~~GlDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~e~~~~~~l~~ 777 (930)
|+.+|||||+++++|+|+|++++||++++|.++.+|+||+||+||.|++|.+++|+.+.+...++.+.+
T Consensus 308 ~~~~vlv~T~~~~~Gldi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~ 376 (394)
T 1fuu_A 308 GSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEK 376 (394)
T ss_dssp ---------------------------------------------------------------------
T ss_pred CCCcEEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHHcCcccCCCCCceEEEEEchhHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999888887765
|
| >2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-46 Score=440.89 Aligned_cols=345 Identities=19% Similarity=0.280 Sum_probs=271.5
Q ss_pred CCCCCCCCCHHHHHHHHhcCCCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEE
Q psy15524 391 SYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAV 470 (930)
Q Consensus 391 ~f~~l~~l~~~~~~~l~~~~~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~l 470 (930)
.+.++ ++++.+.+.|.+.|||..|+|+|.++|+.++.|+|+++.||||+|||+||++|++.. +..+|
T Consensus 22 ~~~~~-~l~~~l~~~L~~~fg~~~~rp~Q~~~i~~il~g~d~lv~~pTGsGKTl~~~lpal~~------------~g~~l 88 (591)
T 2v1x_A 22 NKEDF-PWSGKVKDILQNVFKLEKFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALCS------------DGFTL 88 (591)
T ss_dssp CCSCS-TTHHHHHHHHHHTSCCCSCCTTHHHHHHHHHTTCCEEEECCTTSCTTHHHHHHHHTS------------SSEEE
T ss_pred ccccC-CCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHHHc------------CCcEE
Confidence 34567 899999999998899999999999999999999999999999999999999999731 34799
Q ss_pred EEccCHHHHHHHHHHHHHhhccCCCcceEEEeCCCchHHHHHH---H---hcCCcEEEECchhHH------HhhhccCCc
Q psy15524 471 IILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKAR---I---RKGISILVATPGRLL------DHCKHTETL 538 (930)
Q Consensus 471 il~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~---~---~~~~~Ilv~Tp~rl~------~~l~~~~~~ 538 (930)
||+|+++|+.|+.+.+.++. +.+..+.|+......... + ..+.+|+|+||++|. +.+.. ..
T Consensus 89 VisP~~~L~~q~~~~l~~~g-----i~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~--~~ 161 (591)
T 2v1x_A 89 VICPLISLMEDQLMVLKQLG-----ISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEK--AY 161 (591)
T ss_dssp EECSCHHHHHHHHHHHHHHT-----CCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHHH--HH
T ss_pred EEeCHHHHHHHHHHHHHhcC-----CcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHHh--hh
Confidence 99999999999999998873 345667777655433222 2 356899999999874 22322 23
Q ss_pred ccccceEEEEecchhhhhcC--cHHHHHHHHHHHhhcCccceEEEEccccCHHHHHHHhhhcCCC--EEEEccCCCCccc
Q psy15524 539 KFSKVEHLVLDEADRILDQG--YERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNP--IQIDAADSTDIHN 614 (930)
Q Consensus 539 ~~~~l~~lVlDEah~l~~~g--~~~~l~~i~~~l~~~~~~~q~vl~SAT~~~~~~~l~~~~~~~~--~~i~~~~~~~~~~ 614 (930)
.+.+++++||||||++.+|| |...+..+ ..+....+..+++++|||+++.+...+...+..+ ..+....
T Consensus 162 ~~~~i~~iViDEAH~is~~g~dfr~~~~~l-~~l~~~~~~~~ii~lSAT~~~~v~~~i~~~l~~~~~~~~~~~~------ 234 (591)
T 2v1x_A 162 EARRFTRIAVDEVHCCSQWGHDFRPDYKAL-GILKRQFPNASLIGLTATATNHVLTDAQKILCIEKCFTFTASF------ 234 (591)
T ss_dssp HTTCEEEEEEETGGGGSTTCTTCCGGGGGG-GHHHHHCTTSEEEEEESSCCHHHHHHHHHHTTCCSCEEEECCC------
T ss_pred hccCCcEEEEECcccccccccccHHHHHHH-HHHHHhCCCCcEEEEecCCCHHHHHHHHHHhCCCCcEEEecCC------
Confidence 46789999999999999998 76665442 2222333578999999999998877666555533 3322110
Q ss_pred CccceecCCCceEEEEEcCc--hhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCCceEEEecC
Q psy15524 615 TTDSLVIPDSLKQHFIVTPP--KLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHG 692 (930)
Q Consensus 615 ~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg 692 (930)
....+...+...+. ..+...+..++.... .+.++||||+|++.++.+++.|... ++.+..+||
T Consensus 235 ------~r~nl~~~v~~~~~~~~~~~~~l~~~l~~~~------~~~~~IVf~~sr~~~e~la~~L~~~---g~~~~~~h~ 299 (591)
T 2v1x_A 235 ------NRPNLYYEVRQKPSNTEDFIEDIVKLINGRY------KGQSGIIYCFSQKDSEQVTVSLQNL---GIHAGAYHA 299 (591)
T ss_dssp ------CCTTEEEEEEECCSSHHHHHHHHHHHHTTTT------TTCEEEEECSSHHHHHHHHHHHHHT---TCCEEEECT
T ss_pred ------CCcccEEEEEeCCCcHHHHHHHHHHHHHHhc------cCCCeEEEeCcHHHHHHHHHHHHHC---CCCEEEecC
Confidence 01122222222221 233444555543221 2679999999999999999999875 788999999
Q ss_pred CCCHHHHHHHHHHhhcCCCcEEEeccccccccCCCCccEEEEecCCCChhhHHhhhcccccCCCCceEEEEeCcccHHHH
Q psy15524 693 SMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPSEVKLV 772 (930)
Q Consensus 693 ~~~~~~R~~v~~~F~~~~~~vLv~T~~~~~GlDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~e~~~~ 772 (930)
+|++.+|..+++.|++|+.+|||||+++++|+|+|+|++||++++|.+++.|+||+|||||.|.+|.|++|+.+.+...+
T Consensus 300 ~l~~~~R~~~~~~F~~g~~~VlVAT~a~~~GID~p~V~~VI~~~~p~s~~~y~Qr~GRaGR~G~~g~~i~l~~~~D~~~~ 379 (591)
T 2v1x_A 300 NLEPEDKTTVHRKWSANEIQVVVATVAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAGRDDMKADCILYYGFGDIFRI 379 (591)
T ss_dssp TSCHHHHHHHHHHHHTTSSSEEEECTTSCTTCCCSCEEEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHHHH
T ss_pred CCCHHHHHHHHHHHHcCCCeEEEEechhhcCCCcccccEEEEeCCCCCHHHHHHHhccCCcCCCCceEEEEEChHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998877
Q ss_pred HHHHh
Q psy15524 773 EELQN 777 (930)
Q Consensus 773 ~~l~~ 777 (930)
+.+..
T Consensus 380 ~~~~~ 384 (591)
T 2v1x_A 380 SSMVV 384 (591)
T ss_dssp HHHTT
T ss_pred HHHHh
Confidence 77654
|
| >2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-46 Score=411.33 Aligned_cols=332 Identities=31% Similarity=0.518 Sum_probs=276.1
Q ss_pred CCHHHHHHHHhcCCCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHH
Q psy15524 398 IHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRE 477 (930)
Q Consensus 398 l~~~~~~~l~~~~~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~Ptre 477 (930)
|++.+.+.|.+ +||..|+|+|.++++.+++++++++.+|||+|||++|++|+++. +.++||++||++
T Consensus 1 l~~~i~~~l~~-~g~~~l~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~------------~~~~liv~P~~~ 67 (337)
T 2z0m_A 1 MNEKIEQAIRE-MGFKNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPILEL------------GMKSLVVTPTRE 67 (337)
T ss_dssp CCHHHHHHHHH-TTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHH------------TCCEEEECSSHH
T ss_pred CCHHHHHHHHH-cCCCCCCHHHHHHHHHHhcCCCEEEEcCCCCcHHHHHHHHHHhh------------cCCEEEEeCCHH
Confidence 57889999974 89999999999999999999999999999999999999998853 456999999999
Q ss_pred HHHHHHHHHHHhhccCCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhccCCcccccceEEEEecchhhhhc
Q psy15524 478 LALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQ 557 (930)
Q Consensus 478 La~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~l~~~ 557 (930)
|+.|+++.+.+++...+ .....+.|+.........+. +++|+|+||++|.+++.. ....+.+++++|+||||++.++
T Consensus 68 L~~q~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~i~v~T~~~l~~~~~~-~~~~~~~~~~iViDEah~~~~~ 144 (337)
T 2z0m_A 68 LTRQVASHIRDIGRYMD-TKVAEVYGGMPYKAQINRVR-NADIVVATPGRLLDLWSK-GVIDLSSFEIVIIDEADLMFEM 144 (337)
T ss_dssp HHHHHHHHHHHHTTTSC-CCEEEECTTSCHHHHHHHHT-TCSEEEECHHHHHHHHHT-TSCCGGGCSEEEEESHHHHHHT
T ss_pred HHHHHHHHHHHHhhhcC-CcEEEEECCcchHHHHhhcC-CCCEEEECHHHHHHHHHc-CCcchhhCcEEEEEChHHhhcc
Confidence 99999999999876544 34566778777666555444 599999999999988765 4456789999999999999999
Q ss_pred CcHHHHHHHHHHHhhcCccceEEEEccccCHHHHHHHhhhcCCCEEEEccCCCCcccCccceecCCCceEEEEEcCchhh
Q psy15524 558 GYERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLR 637 (930)
Q Consensus 558 g~~~~l~~i~~~l~~~~~~~q~vl~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 637 (930)
++...+..++..++ ...+++++|||+++.........+.++..+.... ....+.+.+..+....+
T Consensus 145 ~~~~~~~~~~~~~~---~~~~~~~~SAT~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~ 209 (337)
T 2z0m_A 145 GFIDDIKIILAQTS---NRKITGLFSATIPEEIRKVVKDFITNYEEIEACI------------GLANVEHKFVHVKDDWR 209 (337)
T ss_dssp TCHHHHHHHHHHCT---TCSEEEEEESCCCHHHHHHHHHHSCSCEEEECSG------------GGGGEEEEEEECSSSSH
T ss_pred ccHHHHHHHHhhCC---cccEEEEEeCcCCHHHHHHHHHhcCCceeeeccc------------ccCCceEEEEEeChHHH
Confidence 99888887776654 3778999999999999888888888877664321 12234455555555443
Q ss_pred HHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHHHHHHHHHHhhcCCCcEEEec
Q psy15524 638 LVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSVKSGVLICT 717 (930)
Q Consensus 638 ~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~v~~~F~~~~~~vLv~T 717 (930)
.. ...+.. ..++++||||++.+.++.+++.|. .+..+||+|++.+|..++++|++|+.+|||||
T Consensus 210 ~~--~~~~~~-------~~~~~~lvf~~~~~~~~~l~~~l~-------~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T 273 (337)
T 2z0m_A 210 SK--VQALRE-------NKDKGVIVFVRTRNRVAKLVRLFD-------NAIELRGDLPQSVRNRNIDAFREGEYDMLITT 273 (337)
T ss_dssp HH--HHHHHT-------CCCSSEEEECSCHHHHHHHHTTCT-------TEEEECTTSCHHHHHHHHHHHHTTSCSEEEEC
T ss_pred HH--HHHHHh-------CCCCcEEEEEcCHHHHHHHHHHhh-------hhhhhcCCCCHHHHHHHHHHHHcCCCcEEEEc
Confidence 22 223322 126799999999999998887775 35678999999999999999999999999999
Q ss_pred cccccccCCCCccEEEEecCCCChhhHHhhhcccccCCCCceEEEEeCcccHHHHHHHHh
Q psy15524 718 DVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPSEVKLVEELQN 777 (930)
Q Consensus 718 ~~~~~GlDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~e~~~~~~l~~ 777 (930)
+++++|+|+|++++||++++|.++.+|+||+||+||.|++|.+++|+. .|..+++.+++
T Consensus 274 ~~~~~Gid~~~~~~Vi~~~~~~s~~~~~Q~~GR~gR~g~~g~~~~~~~-~~~~~~~~i~~ 332 (337)
T 2z0m_A 274 DVASRGLDIPLVEKVINFDAPQDLRTYIHRIGRTGRMGRKGEAITFIL-NEYWLEKEVKK 332 (337)
T ss_dssp HHHHTTCCCCCBSEEEESSCCSSHHHHHHHHTTBCGGGCCEEEEEEES-SCHHHHHHHC-
T ss_pred CccccCCCccCCCEEEEecCCCCHHHhhHhcCccccCCCCceEEEEEe-CcHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999 78777777654
|
| >1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-46 Score=433.48 Aligned_cols=345 Identities=19% Similarity=0.302 Sum_probs=274.7
Q ss_pred CCCCCCCCCCHHHHHHHHhcCCCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeE
Q psy15524 390 TSYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYA 469 (930)
Q Consensus 390 ~~f~~l~~l~~~~~~~l~~~~~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~ 469 (930)
.+|+++ ++++.+.+.|.+.|||..|+|+|.++|+.+++|+|+++.||||+|||+||++|++.. +..+
T Consensus 2 ~~fe~l-~L~~~~~~~l~~~~g~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~~------------~g~~ 68 (523)
T 1oyw_A 2 AQAEVL-NLESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLL------------NGLT 68 (523)
T ss_dssp CCCCCS-SHHHHHHHHHHHTTCCSSCCTTHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHS------------SSEE
T ss_pred CChhhC-CCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHh------------CCCE
Confidence 368999 899999999998899999999999999999999999999999999999999999832 2468
Q ss_pred EEEccCHHHHHHHHHHHHHhhccCCCcceEEEeCCCchHHHH---HHH-hcCCcEEEECchhHHHhhhccCCcccccceE
Q psy15524 470 VIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEK---ARI-RKGISILVATPGRLLDHCKHTETLKFSKVEH 545 (930)
Q Consensus 470 lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~---~~~-~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~ 545 (930)
|||+|+++|+.|+.+.+..+. +....+.|+....... ..+ ....+|+|+||++|...... ..+...++++
T Consensus 69 lvi~P~~aL~~q~~~~l~~~g-----i~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~-~~l~~~~~~~ 142 (523)
T 1oyw_A 69 VVVSPLISLMKDQVDQLQANG-----VAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFL-EHLAHWNPVL 142 (523)
T ss_dssp EEECSCHHHHHHHHHHHHHTT-----CCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHH-HHHTTSCEEE
T ss_pred EEECChHHHHHHHHHHHHHcC-----CcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHH-HHHhhCCCCE
Confidence 999999999999999998753 2445566665543322 222 34589999999999532111 1223478999
Q ss_pred EEEecchhhhhcC--cHHHHHHHHHHHhhcCccceEEEEccccCHHHHH-HHhh-hcCCCEEEEccCCCCcccCccceec
Q psy15524 546 LVLDEADRILDQG--YERDIAEFLEILKKQKPQFQSILLSATLTPAVQR-LAGM-TLQNPIQIDAADSTDIHNTTDSLVI 621 (930)
Q Consensus 546 lVlDEah~l~~~g--~~~~l~~i~~~l~~~~~~~q~vl~SAT~~~~~~~-l~~~-~~~~~~~i~~~~~~~~~~~~~~~~~ 621 (930)
||+||||++.++| |...+..+...... .++.+++++|||+++.+.. +... .+.+|..+.....
T Consensus 143 vViDEaH~i~~~g~~fr~~~~~l~~l~~~-~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~------------ 209 (523)
T 1oyw_A 143 LAVDEAHCISQWGHDFRPEYAALGQLRQR-FPTLPFMALTATADDTTRQDIVRLLGLNDPLIQISSFD------------ 209 (523)
T ss_dssp EEESSGGGGCTTSSCCCHHHHGGGGHHHH-CTTSCEEEEESCCCHHHHHHHHHHHTCCSCEEEECCCC------------
T ss_pred EEEeCccccCcCCCccHHHHHHHHHHHHh-CCCCCEEEEeCCCCHHHHHHHHHHhCCCCCeEEeCCCC------------
Confidence 9999999999998 66666555433333 3478999999999987654 3332 2345543322110
Q ss_pred CCCceEEEEEcCchhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHHHHHH
Q psy15524 622 PDSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTE 701 (930)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~ 701 (930)
... ..+...+...+...+..++... .+.++||||+|++.++.+++.|... ++.+..+||+|++++|..
T Consensus 210 r~~--l~~~v~~~~~~~~~l~~~l~~~-------~~~~~IVf~~sr~~~e~l~~~L~~~---g~~~~~~h~~l~~~~R~~ 277 (523)
T 1oyw_A 210 RPN--IRYMLMEKFKPLDQLMRYVQEQ-------RGKSGIIYCNSRAKVEDTAARLQSK---GISAAAYHAGLENNVRAD 277 (523)
T ss_dssp CTT--EEEEEEECSSHHHHHHHHHHHT-------TTCCEEEECSSHHHHHHHHHHHHHT---TCCEEEECTTSCHHHHHH
T ss_pred CCc--eEEEEEeCCCHHHHHHHHHHhc-------CCCcEEEEeCCHHHHHHHHHHHHHC---CCCEEEecCCCCHHHHHH
Confidence 011 2333444456666777777543 2679999999999999999999875 788999999999999999
Q ss_pred HHHHhhcCCCcEEEeccccccccCCCCccEEEEecCCCChhhHHhhhcccccCCCCceEEEEeCcccHHHHHHHHhc
Q psy15524 702 VFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPSEVKLVEELQNR 778 (930)
Q Consensus 702 v~~~F~~~~~~vLv~T~~~~~GlDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~e~~~~~~l~~~ 778 (930)
+++.|++|+.+|||||+++++|+|+|+|++||++++|.+++.|+||+|||||.|.+|.|++|+.+.+...++.+...
T Consensus 278 ~~~~f~~g~~~vlVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRaGR~g~~~~~~l~~~~~d~~~~~~~~~~ 354 (523)
T 1oyw_A 278 VQEKFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCLEE 354 (523)
T ss_dssp HHHHHHTTSCSEEEECTTSCTTTCCTTCCEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHHHHHHHHHT
T ss_pred HHHHHHcCCCeEEEEechhhCCCCccCccEEEEECCCCCHHHHHHHhccccCCCCCceEEEEeCHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999888877654
|
| >1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-46 Score=433.51 Aligned_cols=338 Identities=19% Similarity=0.203 Sum_probs=254.8
Q ss_pred HhcCCCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHH
Q psy15524 407 NEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIF 486 (930)
Q Consensus 407 ~~~~~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~ 486 (930)
.+.+|| .|||+|..++|.+++|+ |++|+||+|||++|.+|++..... |..++||+||++||.|+++.+
T Consensus 77 ~r~lG~-~pt~VQ~~~ip~ll~G~--Iaea~TGeGKTlaf~LP~~l~aL~---------g~~vlVltptreLA~qd~e~~ 144 (844)
T 1tf5_A 77 RRVTGM-FPFKVQLMGGVALHDGN--IAEMKTGEGKTLTSTLPVYLNALT---------GKGVHVVTVNEYLASRDAEQM 144 (844)
T ss_dssp HHHHSC-CCCHHHHHHHHHHHTTS--EEECCTTSCHHHHHHHHHHHHHTT---------SSCEEEEESSHHHHHHHHHHH
T ss_pred HHHcCC-CCcHHHHHhhHHHhCCC--EEEccCCcHHHHHHHHHHHHHHHc---------CCCEEEEeCCHHHHHHHHHHH
Confidence 345799 99999999999999999 999999999999999999854432 567999999999999999999
Q ss_pred HHhhccCCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhH-HHhhhcc-----CCcccccceEEEEecchhhh-hcC-
Q psy15524 487 TKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRL-LDHCKHT-----ETLKFSKVEHLVLDEADRIL-DQG- 558 (930)
Q Consensus 487 ~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl-~~~l~~~-----~~~~~~~l~~lVlDEah~l~-~~g- 558 (930)
..++..++ +.+++++||.+.. .+....+++|+|+|||+| .+++... ..+.++.+.++|+||||+|+ |++
T Consensus 145 ~~l~~~lg-l~v~~i~gg~~~~--~r~~~~~~dIv~gTpgrlgfD~L~D~m~~~~~~l~lr~~~~lVlDEaD~mLiDea~ 221 (844)
T 1tf5_A 145 GKIFEFLG-LTVGLNLNSMSKD--EKREAYAADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVDSILIDEAR 221 (844)
T ss_dssp HHHHHHTT-CCEEECCTTSCHH--HHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEETHHHHHTTTTT
T ss_pred HHHHhhcC-CeEEEEeCCCCHH--HHHHhcCCCEEEECchhhhHHHHHHhhhcchhhhcccCCCEEEECchhhhhhhccc
Confidence 99988765 5678889997653 334456799999999999 5555432 24567899999999999998 775
Q ss_pred --------------cHHHHHHHHHHHhhc------CccceEE-----------------EEccccCHH---HHHH--Hhh
Q psy15524 559 --------------YERDIAEFLEILKKQ------KPQFQSI-----------------LLSATLTPA---VQRL--AGM 596 (930)
Q Consensus 559 --------------~~~~l~~i~~~l~~~------~~~~q~v-----------------l~SAT~~~~---~~~l--~~~ 596 (930)
|...+..|+..++.. ...+|++ +||||.+.. +... +..
T Consensus 222 tplIisg~~~~~~~~~~~i~~iv~~l~~~~~y~vd~k~rq~~lt~~g~~~~e~~~~i~~Lfsat~~~~~~~i~~al~A~~ 301 (844)
T 1tf5_A 222 TPLIISGQAAKSTKLYVQANAFVRTLKAEKDYTYDIKTKAVQLTEEGMTKAEKAFGIDNLFDVKHVALNHHINQALKAHV 301 (844)
T ss_dssp CEEEEEEEEECCCHHHHHHHHHHTTCCSSSSBCCCSSSCCCCBCHHHHHHHHHHTTCSCTTSGGGHHHHHHHHHHHHHHH
T ss_pred cchhhcCCcccchhHHHHHHHHHHhCcccccceeccccceEEecHHHHHHHHHHhCccccCCCccchhHHHHHHHHHHHH
Confidence 567777777776420 1367777 899998753 3322 222
Q ss_pred hcC-CCEEEE-------ccCCCC-----------------------cccC------------------------------
Q psy15524 597 TLQ-NPIQID-------AADSTD-----------------------IHNT------------------------------ 615 (930)
Q Consensus 597 ~~~-~~~~i~-------~~~~~~-----------------------~~~~------------------------------ 615 (930)
.+. +..++. +..... ....
T Consensus 302 l~~~d~dYiv~dg~v~ivDe~tgr~m~grr~sdGLhqaieake~v~I~~e~~t~a~It~q~~fr~y~kl~GmTGTa~te~ 381 (844)
T 1tf5_A 302 AMQKDVDYVVEDGQVVIVDSFTGRLMKGRRYSEGLHQAIEAKEGLEIQNESMTLATITFQNYFRMYEKLAGMTGTAKTEE 381 (844)
T ss_dssp TCCBTTTEEEETTEEEEBCTTTCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEEEHHHHHTTSSEEEEEESCCGGGH
T ss_pred HhhcCCceEEecCeeEEeecccccccCCCccchhhHHHHhhcccceecccccccceeeHHHHHHHHhhhccCCcccchhH
Confidence 221 221111 100000 0000
Q ss_pred --------ccceecCCCce------EEEEEcCchhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhc
Q psy15524 616 --------TDSLVIPDSLK------QHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVL 681 (930)
Q Consensus 616 --------~~~~~~~~~~~------~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~ 681 (930)
.....+|.... +.++.+....|...+...+..... .+.++||||+|++.++.+++.|...
T Consensus 382 ~e~~~iY~l~vv~IPtn~p~~r~d~~d~v~~~~~~K~~al~~~i~~~~~-----~~~pvLVft~s~~~se~Ls~~L~~~- 455 (844)
T 1tf5_A 382 EEFRNIYNMQVVTIPTNRPVVRDDRPDLIYRTMEGKFKAVAEDVAQRYM-----TGQPVLVGTVAVETSELISKLLKNK- 455 (844)
T ss_dssp HHHHHHHCCCEEECCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHHH-----HTCCEEEEESCHHHHHHHHHHHHTT-
T ss_pred HHHHHHhCCceEEecCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHHh-----cCCcEEEEECCHHHHHHHHHHHHHC-
Confidence 00011221111 124456677788888887764321 1678999999999999999999875
Q ss_pred CCCceEEEecCCCCHHHHHHHHHHhhcCCCcEEEeccccccccCCC--------CccEEEEecCCCChhhHHhhhccccc
Q psy15524 682 GENIAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLP--------LVDWIVQYTAPSSSTDYVHRVGRTAR 753 (930)
Q Consensus 682 ~~~~~~~~lhg~~~~~~R~~v~~~F~~~~~~vLv~T~~~~~GlDip--------~v~~VI~~~~p~s~~~y~qr~GRagR 753 (930)
|+.+..+||++.+.+|..+.++|+.| .|+||||+|+||+||+ ++.+||+|+.|.|.+.|+||+|||||
T Consensus 456 --gi~~~vLhg~~~~rEr~ii~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~ggl~VIn~d~p~s~r~y~hr~GRTGR 531 (844)
T 1tf5_A 456 --GIPHQVLNAKNHEREAQIIEEAGQKG--AVTIATNMAGRGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGR 531 (844)
T ss_dssp --TCCCEEECSSCHHHHHHHHTTTTSTT--CEEEEETTSSTTCCCCCCTTSGGGTSEEEEESSCCSSHHHHHHHHTTSSG
T ss_pred --CCCEEEeeCCccHHHHHHHHHcCCCC--eEEEeCCccccCcCccccchhhhcCCcEEEEecCCCCHHHHHhhcCcccc
Confidence 88899999999999988777777766 5999999999999999 88899999999999999999999999
Q ss_pred CCCCceEEEEeCcccH
Q psy15524 754 VGHEGSSLLFLIPSEV 769 (930)
Q Consensus 754 ~g~~g~~~~~~~~~e~ 769 (930)
+|.+|.+++|++++|.
T Consensus 532 qG~~G~s~~~vs~eD~ 547 (844)
T 1tf5_A 532 QGDPGITQFYLSMEDE 547 (844)
T ss_dssp GGCCEEEEEEEETTSS
T ss_pred CCCCCeEEEEecHHHH
Confidence 9999999999997663
|
| >3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-45 Score=415.45 Aligned_cols=327 Identities=20% Similarity=0.271 Sum_probs=255.7
Q ss_pred HHHHHHHHhcCCCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHH
Q psy15524 400 PFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELA 479 (930)
Q Consensus 400 ~~~~~~l~~~~~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa 479 (930)
+.+.+.+.+.+|| +|+|+|.++++.+++|+|++++||||||||++|++|++..+. .+.++||++||++|+
T Consensus 8 ~~~~~~l~~~~~~-~~~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~l~~~~~~~~---------~~~~~lil~Pt~~L~ 77 (414)
T 3oiy_A 8 EDFRSFFKKKFGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLAR---------KGKKSALVFPTVTLV 77 (414)
T ss_dssp HHHHHHHHHHHSS-CCCHHHHHHHHHHTTTCCEECCSCSSSSHHHHHHHHHHHHHT---------TTCCEEEEESSHHHH
T ss_pred HHHHHHHHHhcCC-CCCHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHhc---------CCCEEEEEECCHHHH
Confidence 3455666666788 799999999999999999999999999999999999887652 367899999999999
Q ss_pred HHHHHHHHHhhccCCCcceEEEeCCCch---HHHHHHHhcC-CcEEEECchhHHHhhhccCCcccccceEEEEecchhhh
Q psy15524 480 LQTLEIFTKLCKSFTWIVPSWLTGGEKM---KSEKARIRKG-ISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRIL 555 (930)
Q Consensus 480 ~Q~~~~~~~~~~~~~~~~~~~~~gg~~~---~~~~~~~~~~-~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~l~ 555 (930)
.|+++.+.+++. ....+..++||... ..+...+..+ ++|+|+|||+|.+++.. +.+.+++++|+||||++.
T Consensus 78 ~q~~~~~~~~~~--~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~---~~~~~~~~iViDEaH~~~ 152 (414)
T 3oiy_A 78 KQTLERLQKLAD--EKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK---LSQKRFDFVFVDDVDAVL 152 (414)
T ss_dssp HHHHHHHHHHCC--SSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHH---HTTCCCSEEEESCHHHHH
T ss_pred HHHHHHHHHHcc--CCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHH---hccccccEEEEeChHhhh
Confidence 999999999876 34567788888876 4455666666 99999999999988864 556789999999998665
Q ss_pred h-----------cCcHHH-HHHHHHHHhh------c--CccceEEEEccc-cCHHHH-HHHhhhcCCCEEEEccCCCCcc
Q psy15524 556 D-----------QGYERD-IAEFLEILKK------Q--KPQFQSILLSAT-LTPAVQ-RLAGMTLQNPIQIDAADSTDIH 613 (930)
Q Consensus 556 ~-----------~g~~~~-l~~i~~~l~~------~--~~~~q~vl~SAT-~~~~~~-~l~~~~~~~~~~i~~~~~~~~~ 613 (930)
+ +||... +..++..++. . .+..|++++||| .++.+. .+....+. +....
T Consensus 153 ~~~~~~d~~l~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~----~~~~~----- 223 (414)
T 3oiy_A 153 KASRNIDTLLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN----FTVGR----- 223 (414)
T ss_dssp HCHHHHHHHHHHTTCCHHHHHHHHHHHHHTCCCCCCTTCCCCEEEESSCCSSCCSSTTHHHHHHHS----CCSSC-----
T ss_pred hccchhhhHHhhcCCcHHHHHHHHHhcccchhhhhcccCCCceEEEEecCCCcchhHHHHHHHhhc----cCcCc-----
Confidence 4 777777 7888887751 1 147899999999 554433 22222221 11110
Q ss_pred cCccceecCCCceEEEEEcCchhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCCceEE-EecC
Q psy15524 614 NTTDSLVIPDSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFF-KLHG 692 (930)
Q Consensus 614 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~-~lhg 692 (930)
....+..+.+.+..++ +...+..++... +.++||||++++.++.+++.|... ++.+. .+||
T Consensus 224 ----~~~~~~~i~~~~~~~~---~~~~l~~~l~~~--------~~~~lVF~~~~~~~~~l~~~L~~~---~~~~~~~~h~ 285 (414)
T 3oiy_A 224 ----LVSVARNITHVRISSR---SKEKLVELLEIF--------RDGILIFAQTEEEGKELYEYLKRF---KFNVGETWSE 285 (414)
T ss_dssp ----CCCCCCSEEEEEESSC---CHHHHHHHHHHH--------CSSEEEEESSHHHHHHHHHHHHHT---TCCEEESSSC
T ss_pred ----cccccccchheeeccC---HHHHHHHHHHHc--------CCCEEEEECCHHHHHHHHHHHHHc---CCceehhhcC
Confidence 1122345566665543 444555555542 579999999999999999999875 78887 8898
Q ss_pred CCCHHHHHHHHHHhhcCCCcEEEe----ccccccccCCCC-ccEEEEecCC--CChhhHHhhhcccccCC----CCceEE
Q psy15524 693 SMSQSERTEVFKTFRSVKSGVLIC----TDVAARGLDLPL-VDWIVQYTAP--SSSTDYVHRVGRTARVG----HEGSSL 761 (930)
Q Consensus 693 ~~~~~~R~~v~~~F~~~~~~vLv~----T~~~~~GlDip~-v~~VI~~~~p--~s~~~y~qr~GRagR~g----~~g~~~ 761 (930)
. +|. ++.|++|+.+|||| |+++++|+|+|+ |++||++|+| .+..+|+||+|||||.| +.|.++
T Consensus 286 ~----~r~--~~~f~~g~~~vLvat~s~T~~~~~GiDip~~v~~VI~~~~p~~~~~~~y~qr~GR~gR~g~~~~~~g~~i 359 (414)
T 3oiy_A 286 F----EKN--FEDFKVGKINILIGVQAYYGKLTRGVDLPERIKYVIFWGTPSGPDVYTYIQASGRSSRILNGVLVKGVSV 359 (414)
T ss_dssp H----HHH--HHHHHTTSCSEEEEECCTTCCCCCCCCCTTTCCEEEEESCCTTTCHHHHHHHHGGGCCEETTEECCEEEE
T ss_pred c----chH--HHHHhCCCCeEEEEecCcCchhhccCccccccCEEEEECCCCCCCHHHHHHHhCccccCCCCCCcceEEE
Confidence 5 444 99999999999999 999999999999 9999999999 99999999999999998 478999
Q ss_pred EEeCcccHHHHHHHH
Q psy15524 762 LFLIPSEVKLVEELQ 776 (930)
Q Consensus 762 ~~~~~~e~~~~~~l~ 776 (930)
+|+ .+..+++.++
T Consensus 360 ~~~--~~~~~~~~l~ 372 (414)
T 3oiy_A 360 IFE--EDEEIFESLK 372 (414)
T ss_dssp EEC--CCHHHHHHHH
T ss_pred EEE--ccHHHHHHHH
Confidence 888 5555555554
|
| >1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-43 Score=407.40 Aligned_cols=342 Identities=17% Similarity=0.221 Sum_probs=259.8
Q ss_pred HHHHHhcCCCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHH
Q psy15524 403 KKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQT 482 (930)
Q Consensus 403 ~~~l~~~~~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~ 482 (930)
.++..+.+|+ .|+++|..++|.+++|+ |++|+||+|||++|.+|++..... |..++||+||++||.|+
T Consensus 101 rEa~~R~lG~-rP~~VQ~~~ip~Ll~G~--Iaem~TGeGKTLa~~LP~~l~aL~---------g~~v~VvTpTreLA~Qd 168 (922)
T 1nkt_A 101 REAAWRVLDQ-RPFDVQVMGAAALHLGN--VAEMKTGEGKTLTCVLPAYLNALA---------GNGVHIVTVNDYLAKRD 168 (922)
T ss_dssp HHHHHHHHSC-CCCHHHHHHHHHHHTTE--EEECCTTSCHHHHTHHHHHHHHTT---------TSCEEEEESSHHHHHHH
T ss_pred HHHHHHHcCC-CCCHHHHHHHHhHhcCC--EEEecCCCccHHHHHHHHHHHHHh---------CCCeEEEeCCHHHHHHH
Confidence 3344456798 99999999999999998 999999999999999999865543 56799999999999999
Q ss_pred HHHHHHhhccCCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhH-HHhhhcc-----CCcccccceEEEEecchhhh-
Q psy15524 483 LEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRL-LDHCKHT-----ETLKFSKVEHLVLDEADRIL- 555 (930)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl-~~~l~~~-----~~~~~~~l~~lVlDEah~l~- 555 (930)
++.+..++..++ +.+++++||.+.. .++...+++|+|+|||+| .++++.. ..+.++.+.++||||||+|+
T Consensus 169 ae~m~~l~~~lG-Lsv~~i~gg~~~~--~r~~~y~~DIvygTpgrlgfDyLrD~m~~~~~~l~lr~l~~lIVDEaDsmLi 245 (922)
T 1nkt_A 169 SEWMGRVHRFLG-LQVGVILATMTPD--ERRVAYNADITYGTNNEFGFDYLRDNMAHSLDDLVQRGHHYAIVDEVDSILI 245 (922)
T ss_dssp HHHHHHHHHHTT-CCEEECCTTCCHH--HHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEETTHHHHHT
T ss_pred HHHHHHHHhhcC-CeEEEEeCCCCHH--HHHHhcCCCEEEECchHhhHHHHHhhhhccHhhhccCCCCEEEEeChHHHHH
Confidence 999999998765 5678888987643 344456799999999999 7777653 24567899999999999998
Q ss_pred hc---------------CcHHHHHHHHHHHhhc------CccceEE-----------------EEccccCHH---HHHHH
Q psy15524 556 DQ---------------GYERDIAEFLEILKKQ------KPQFQSI-----------------LLSATLTPA---VQRLA 594 (930)
Q Consensus 556 ~~---------------g~~~~l~~i~~~l~~~------~~~~q~v-----------------l~SAT~~~~---~~~l~ 594 (930)
|. +|...+..|+..++.. ...+|++ ++|||.+.. +....
T Consensus 246 DeartPLiiSg~~~~~~~~y~~i~~iv~~L~~~~dy~vDek~rqv~Lte~G~~~~e~~l~i~~Lfsat~~~l~~~i~~aL 325 (922)
T 1nkt_A 246 DEARTPLIISGPADGASNWYTEFARLAPLMEKDVHYEVDLRKRTVGVHEKGVEFVEDQLGIDNLYEAANSPLVSYLNNAL 325 (922)
T ss_dssp TGGGSCEEEEEECCCCHHHHHHHHHHHHHSCBTTTEEEETTTTEEEECHHHHHHHHHHHTCSSTTCSTTCCHHHHHHHHH
T ss_pred hcCccceeecCCCCcchhHHHHHHHHHHhCcccccceeccCcceEEecHhHHHHHHHHhCCccccCCcchhHHHHHHHHH
Confidence 43 5778888888888621 1467888 999998753 32221
Q ss_pred --hhhcC-C-------CEEEEccCCCCc-----------------------ccC--------------------------
Q psy15524 595 --GMTLQ-N-------PIQIDAADSTDI-----------------------HNT-------------------------- 615 (930)
Q Consensus 595 --~~~~~-~-------~~~i~~~~~~~~-----------------------~~~-------------------------- 615 (930)
...+. + +..+.+...... ...
T Consensus 326 ~A~~l~~~d~dYiV~dg~vviVDe~TGR~m~grr~sdGLHQaieaKe~V~I~~e~~TlatIt~Qnyfr~Y~kL~GMTGTa 405 (922)
T 1nkt_A 326 KAKELFSRDKDYIVRDGEVLIVDEFTGRVLIGRRYNEGMHQAIEAKEHVEIKAENQTLATITLQNYFRLYDKLAGMTGTA 405 (922)
T ss_dssp HHHHHCCBTTTEEECSSCEEEBCSSSCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEECHHHHHTTSSEEEEEESCC
T ss_pred HHHHHhhcccceeeecCceEEEecccCcccCCccccchhhHHHhccccccccccccccceeehHHHHHhhhhhhccccCc
Confidence 11221 2 111111110000 000
Q ss_pred ------------ccceecCCCc------eEEEEEcCchhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHH
Q psy15524 616 ------------TDSLVIPDSL------KQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELL 677 (930)
Q Consensus 616 ------------~~~~~~~~~~------~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l 677 (930)
.+...+|... .+.++......|...+...+..... .+.++||||.|++.++.+++.|
T Consensus 406 ~te~~Ef~~iY~l~vv~IPtn~p~~R~d~~d~v~~t~~~K~~al~~~i~~~~~-----~gqpvLVft~Sie~sE~Ls~~L 480 (922)
T 1nkt_A 406 QTEAAELHEIYKLGVVSIPTNMPMIREDQSDLIYKTEEAKYIAVVDDVAERYA-----KGQPVLIGTTSVERSEYLSRQF 480 (922)
T ss_dssp GGGHHHHHHHHCCEEEECCCSSCCCCEECCCEEESCHHHHHHHHHHHHHHHHH-----TTCCEEEEESCHHHHHHHHHHH
T ss_pred hhHHHHHHHHhCCCeEEeCCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHHh-----cCCcEEEEECCHHHHHHHHHHH
Confidence 0001112111 0123455667788888887764322 1679999999999999999999
Q ss_pred hhhcCCCceEEEecCCCCHHHHHHHHHHhhcCCCcEEEeccccccccCCCCc----------------------------
Q psy15524 678 STVLGENIAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLV---------------------------- 729 (930)
Q Consensus 678 ~~~~~~~~~~~~lhg~~~~~~R~~v~~~F~~~~~~vLv~T~~~~~GlDip~v---------------------------- 729 (930)
.+. |+++..+||++.+.+|..+.++|+.| .|+||||+++||+||+.+
T Consensus 481 ~~~---Gi~~~vLnak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 555 (922)
T 1nkt_A 481 TKR---RIPHNVLNAKYHEQEATIIAVAGRRG--GVTVATNMAGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAA 555 (922)
T ss_dssp HHT---TCCCEEECSSCHHHHHHHHHTTTSTT--CEEEEETTCSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHH
T ss_pred HHC---CCCEEEecCChhHHHHHHHHhcCCCC--eEEEecchhhcCccccCCCCHHHHHHHHHhhccccccccchhhHHH
Confidence 985 88899999999888888888999888 499999999999999965
Q ss_pred ------------------------cEEEEecCCCChhhHHhhhcccccCCCCceEEEEeCcccH
Q psy15524 730 ------------------------DWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPSEV 769 (930)
Q Consensus 730 ------------------------~~VI~~~~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~e~ 769 (930)
.+||+++.|.|...|+||+|||||.|.+|.+..|++..|.
T Consensus 556 ~~~~~~~~~~~~~~~~~~V~~~GGlhVI~te~pes~riy~qr~GRTGRqGdpG~s~fflSleD~ 619 (922)
T 1nkt_A 556 WHSELPIVKEEASKEAKEVIEAGGLYVLGTERHESRRIDNQLRGRSGRQGDPGESRFYLSLGDE 619 (922)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHTTSEEEEECSCCSSHHHHHHHHHTSSGGGCCEEEEEEEETTSH
T ss_pred HHHHHHHHHHHHHHhhhHHHhcCCcEEEeccCCCCHHHHHHHhcccccCCCCeeEEEEechhHH
Confidence 5999999999999999999999999999999999998765
|
| >2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-44 Score=413.52 Aligned_cols=338 Identities=19% Similarity=0.188 Sum_probs=232.5
Q ss_pred HhcCCCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHH
Q psy15524 407 NEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIF 486 (930)
Q Consensus 407 ~~~~~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~ 486 (930)
...+|. .|+++|..++|.+++|+ +++|+||||||++|++|++..... |.+++||+||++||.|+++.+
T Consensus 68 ~R~lg~-~p~~VQ~~~i~~ll~G~--Iaem~TGsGKTlaf~LP~l~~~l~---------g~~vlVltPTreLA~Q~~e~~ 135 (853)
T 2fsf_A 68 KRVFGM-RHFDVQLLGGMVLNERC--IAEMRTGEGKTLTATLPAYLNALT---------GKGVHVVTVNDYLAQRDAENN 135 (853)
T ss_dssp HHHHSC-CCCHHHHHHHHHHHSSE--EEECCTTSCHHHHHHHHHHHHHTT---------SSCCEEEESSHHHHHHHHHHH
T ss_pred HHHcCC-CCChHHHhhcccccCCe--eeeecCCchHHHHHHHHHHHHHHc---------CCcEEEEcCCHHHHHHHHHHH
Confidence 334575 89999999999999998 999999999999999999965432 567999999999999999999
Q ss_pred HHhhccCCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhH-HHhhhccC-----CcccccceEEEEecchhhh-hcC-
Q psy15524 487 TKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRL-LDHCKHTE-----TLKFSKVEHLVLDEADRIL-DQG- 558 (930)
Q Consensus 487 ~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl-~~~l~~~~-----~~~~~~l~~lVlDEah~l~-~~g- 558 (930)
..++..++ +.+++++||.+.. .+.+..+++|+|||||+| .++++..- ...++++.++|+||||+|+ +++
T Consensus 136 ~~l~~~lg-l~v~~i~GG~~~~--~r~~~~~~dIvvgTpgrl~fDyLrd~~~~~~~~~~~~~l~~lVlDEaD~mLiD~a~ 212 (853)
T 2fsf_A 136 RPLFEFLG-LTVGINLPGMPAP--AKREAYAADITYGTNNEYGFDYLRDNMAFSPEERVQRKLHYALVDEVDSILIDEAR 212 (853)
T ss_dssp HHHHHHTT-CCEEECCTTCCHH--HHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCSCCEEEESCHHHHTTTTTT
T ss_pred HHHHHhcC-CeEEEEeCCCCHH--HHHHhcCCCEEEECCchhhHHHHHhhhhccHhHhcccCCcEEEECchHHHHHhcCc
Confidence 99998765 5678889997653 344556799999999999 77776432 3567899999999999999 543
Q ss_pred --------------cHHHHHHHHHHHhhc-----------------CccceEE------------------------EEc
Q psy15524 559 --------------YERDIAEFLEILKKQ-----------------KPQFQSI------------------------LLS 583 (930)
Q Consensus 559 --------------~~~~l~~i~~~l~~~-----------------~~~~q~v------------------------l~S 583 (930)
|...+..|+..++.. ...+|++ ++|
T Consensus 213 tpLIiSg~~~~~~~~y~~i~~iv~~L~~~~~~~~~~~~~~~dy~vdek~rqv~lte~g~~~~e~~l~~~~l~~~~~~Lfs 292 (853)
T 2fsf_A 213 TPLIISGPAEDSSEMYKRVNKIIPHLIRQEKEDSETFQGEGHFSVDEKSRQVNLTERGLVLIEELLVKEGIMDEGESLYS 292 (853)
T ss_dssp CEEEEEEC------------------------------------------------------------------------
T ss_pred ccccccCCCccchhHHHHHHHHHHhchhhhccccccccccccceeccccceEEEcHHHHHHHHHHHHhCCcccccccccC
Confidence 567788888877631 1144543 899
Q ss_pred cccCHHHHHH---H--hhhcC--------CC-----------------------------EEEEccCCCCccc-C-----
Q psy15524 584 ATLTPAVQRL---A--GMTLQ--------NP-----------------------------IQIDAADSTDIHN-T----- 615 (930)
Q Consensus 584 AT~~~~~~~l---~--~~~~~--------~~-----------------------------~~i~~~~~~~~~~-~----- 615 (930)
||.+.....+ . ...+. ++ ..+.+........ .
T Consensus 293 at~~~~~~~i~~al~A~~l~~~d~dYiV~d~~vviVde~tgR~m~grr~sdGLhQaieake~v~I~~e~~tla~It~qny 372 (853)
T 2fsf_A 293 PANIMLMHHVTAALRAHALFTRDVDYIVKDGEVIIVDEHTGRTMQGRRWSDGLHQAVEAKEGVQIQNENQTLASITFQNY 372 (853)
T ss_dssp ----------------------------------------------------------------CCCCCEEEEEEEHHHH
T ss_pred cccchHHHHHHHHHHHHHHhhcCccceeecCcEEEEecccCcccCCCccchhhhHHHHhcccceecccccccceeehHHH
Confidence 9976422211 0 11110 00 0111111000000 0
Q ss_pred --------------------------ccceecCCCc------eEEEEEcCchhhHHHHHHHHHhhccCCCcCCCceEEEE
Q psy15524 616 --------------------------TDSLVIPDSL------KQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVF 663 (930)
Q Consensus 616 --------------------------~~~~~~~~~~------~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~k~iVF 663 (930)
.+...+|... .+.++.+....|..++...+..... .+.++|||
T Consensus 373 fr~Y~kl~GmTGTa~te~~ef~~iY~l~vv~IPtn~p~~R~d~~d~v~~~~~~K~~al~~~i~~~~~-----~gqpvLVf 447 (853)
T 2fsf_A 373 FRLYEKLAGMTGTADTEAFEFSSIYKLDTVVVPTNRPMIRKDLPDLVYMTEAEKIQAIIEDIKERTA-----KGQPVLVG 447 (853)
T ss_dssp HTTSSEEEEEECTTCCCHHHHHHHHCCEEEECCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHHT-----TTCCEEEE
T ss_pred HhhhhhhhcCCCCchhHHHHHHHHhCCcEEEcCCCCCceeecCCcEEEeCHHHHHHHHHHHHHHHhc-----CCCCEEEE
Confidence 0001122111 1123556777888888887764321 26799999
Q ss_pred ecchhhHHHHHHHHhhhcCCCceEEEecCCCCHHHHHHHHHHhhcCCCcEEEeccccccccCCCC---------------
Q psy15524 664 MATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPL--------------- 728 (930)
Q Consensus 664 ~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~v~~~F~~~~~~vLv~T~~~~~GlDip~--------------- 728 (930)
|.|++.++.+++.|... |+++..+||++.+.+|..+.++|+.| .|+||||+|+||+||+.
T Consensus 448 t~sie~se~Ls~~L~~~---gi~~~vLnak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~gn~~~~~~~~~~~~ 522 (853)
T 2fsf_A 448 TISIEKSELVSNELTKA---GIKHNVLNAKFHANEAAIVAQAGYPA--AVTIATNMAGRGTDIVLGGSWQAEVAALENPT 522 (853)
T ss_dssp ESSHHHHHHHHHHHHHT---TCCCEECCTTCHHHHHHHHHTTTSTT--CEEEEESCCSSCSCCCTTCCHHHHHHHCSSCC
T ss_pred ECcHHHHHHHHHHHHHC---CCCEEEecCChhHHHHHHHHhcCCCC--eEEEecccccCCcCccCCCchHhhhhhcccch
Confidence 99999999999999985 88999999999999999999999988 49999999999999987
Q ss_pred -----------------c-----cEEEEecCCCChhhHHhhhcccccCCCCceEEEEeCcccH
Q psy15524 729 -----------------V-----DWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPSEV 769 (930)
Q Consensus 729 -----------------v-----~~VI~~~~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~e~ 769 (930)
| .+||+++.|.|...|+||+|||||.|.+|.+.+|++..|.
T Consensus 523 ~~~~~~~~~~~~~~~~~V~~~GGl~VI~te~pes~riy~qr~GRTGRqGd~G~s~~fls~eD~ 585 (853)
T 2fsf_A 523 AEQIEKIKADWQVRHDAVLEAGGLHIIGTERHESRRIDNQLRGRSGRQGDAGSSRFYLSMEDA 585 (853)
T ss_dssp SSHHHHHHHHHHHHHHHHHHTTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEETTSG
T ss_pred hHHHHHHHHHhhhhhhHHHhcCCcEEEEccCCCCHHHHHhhccccccCCCCeeEEEEecccHH
Confidence 3 6999999999999999999999999999999999998764
|
| >3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.4e-43 Score=434.41 Aligned_cols=355 Identities=17% Similarity=0.171 Sum_probs=260.2
Q ss_pred CCCCCCCCCHHHHHHHHhcCCCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEE
Q psy15524 391 SYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAV 470 (930)
Q Consensus 391 ~f~~l~~l~~~~~~~l~~~~~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~l 470 (930)
.|..+ ++++.+...+.. .++..|+|+|.++|+.++.|+|++++||||||||++|++|++..+.. +.+++
T Consensus 163 ~~~~~-~l~~~~~~~~~~-~~~f~ltp~Q~~AI~~i~~g~dvLV~ApTGSGKTlva~l~i~~~l~~---------g~rvl 231 (1108)
T 3l9o_A 163 NYDYT-PIAEHKRVNEAR-TYPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKN---------KQRVI 231 (1108)
T ss_dssp CCCSS-TTTTTCCCSCSS-CCSSCCCHHHHHHHHHHTTTCCEEEECCSSSHHHHHHHHHHHHHHHT---------TCEEE
T ss_pred CcccC-CCChhhhHHHHH-hCCCCCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHHhc---------CCeEE
Confidence 45555 455544444443 34457999999999999999999999999999999999999998753 67899
Q ss_pred EEccCHHHHHHHHHHHHHhhccCCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhccCCcccccceEEEEec
Q psy15524 471 IILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDE 550 (930)
Q Consensus 471 il~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlDE 550 (930)
|++||++|+.|+++.+.+++. .+++++|+... ..+++|+|+|||+|.+++.+. ...+.++++|||||
T Consensus 232 vl~PtraLa~Q~~~~l~~~~~-----~VglltGd~~~-------~~~~~IlV~Tpe~L~~~L~~~-~~~l~~l~lVVIDE 298 (1108)
T 3l9o_A 232 YTSPIKALSNQKYRELLAEFG-----DVGLMTGDITI-------NPDAGCLVMTTEILRSMLYRG-SEVMREVAWVIFDE 298 (1108)
T ss_dssp EEESSHHHHHHHHHHHHHHTS-----SEEEECSSCBC-------CCSCSEEEEEHHHHHHHHHHC-SSHHHHEEEEEEET
T ss_pred EEcCcHHHHHHHHHHHHHHhC-----CccEEeCcccc-------CCCCCEEEeChHHHHHHHHcC-ccccccCCEEEEhh
Confidence 999999999999999999875 35667887663 246899999999999988773 44588999999999
Q ss_pred chhhhhcCcHHHHHHHHHHHhhcCccceEEEEccccCHH--HHHHHhhhcCCCEEEEccCCCCcccCccceecCCCceEE
Q psy15524 551 ADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPA--VQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQH 628 (930)
Q Consensus 551 ah~l~~~g~~~~l~~i~~~l~~~~~~~q~vl~SAT~~~~--~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 628 (930)
||++.+++|+..+..++..++ +.+|+++||||+++. +..+......+|..+......... ......+......
T Consensus 299 aH~l~d~~rg~~~e~ii~~l~---~~~qvl~lSATipn~~e~a~~l~~~~~~~~~vi~~~~rp~p--l~~~~~~~~~~~~ 373 (1108)
T 3l9o_A 299 VHYMRDKERGVVWEETIILLP---DKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFRPTP--LQHYLFPAHGDGI 373 (1108)
T ss_dssp GGGTTSHHHHHHHHHHHHHSC---TTSEEEEEECSCSSCHHHHHHHHHHTCSCEEEEEECCCSSC--EEEEEEETTSSCC
T ss_pred hhhccccchHHHHHHHHHhcC---CCceEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCCCccc--ceEEEeecCCcce
Confidence 999999999999998888775 489999999999874 557777777666655443221110 0111111000000
Q ss_pred EEEcCchh----------------------------------------h---HHHHHHHHHhhccCCCcCCCceEEEEec
Q psy15524 629 FIVTPPKL----------------------------------------R---LVALASFILGKCQNVNEDEESKMLVFMA 665 (930)
Q Consensus 629 ~~~~~~~~----------------------------------------~---~~~l~~~l~~~~~~~~~~~~~k~iVF~~ 665 (930)
+..+.... + ...+..++..... ....++||||+
T Consensus 374 ~~~vd~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~l~~----~~~~~vIVF~~ 449 (1108)
T 3l9o_A 374 YLVVDEKSTFREENFQKAMASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWK----KKYNPVIVFSF 449 (1108)
T ss_dssp EEEEETTTEECHHHHHHHHTTC-----------------------------CHHHHHHHHHHHHH----TTCCCEEEEES
T ss_pred eeeeccccchhhhhHHHHHHHHHhhhcccccccccccccccccccccccccchhHHHHHHHHHHh----cCCCCEEEEeC
Confidence 10000000 0 1122222222111 12569999999
Q ss_pred chhhHHHHHHHHhhhcCC------------------------------------CceEEEecCCCCHHHHHHHHHHhhcC
Q psy15524 666 TQDMADYHTELLSTVLGE------------------------------------NIAFFKLHGSMSQSERTEVFKTFRSV 709 (930)
Q Consensus 666 s~~~~~~~~~~l~~~~~~------------------------------------~~~~~~lhg~~~~~~R~~v~~~F~~~ 709 (930)
+++.++.++..|...... ...+..+||+|++.+|..+++.|++|
T Consensus 450 sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R~~v~~~F~~G 529 (1108)
T 3l9o_A 450 SKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEG 529 (1108)
T ss_dssp CHHHHHHHHHHTCSHHHHCC----CHHHHGGGSCTHHHHHTTCCHHHHHHTHHHHHTEEEECSCSCHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHhhhcCeeeecCCCCHHHHHHHHHHHhCC
Confidence 999999999887653100 01267789999999999999999999
Q ss_pred CCcEEEeccccccccCCCCccEEEEecC--------CCChhhHHhhhcccccCC--CCceEEEEeCcc-cHHHHHHHHhc
Q psy15524 710 KSGVLICTDVAARGLDLPLVDWIVQYTA--------PSSSTDYVHRVGRTARVG--HEGSSLLFLIPS-EVKLVEELQNR 778 (930)
Q Consensus 710 ~~~vLv~T~~~~~GlDip~v~~VI~~~~--------p~s~~~y~qr~GRagR~g--~~g~~~~~~~~~-e~~~~~~l~~~ 778 (930)
..+|||||+++++|||+|++++||+++. |.++.+|+||+|||||.| ..|.+++++.+. +...+..+...
T Consensus 530 ~ikVLVAT~vla~GIDiP~v~~VI~~~~~~d~~~~r~iS~~eyiQr~GRAGR~G~d~~G~~ill~~~~~~~~~~~~l~~~ 609 (1108)
T 3l9o_A 530 FLKVLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGMVKG 609 (1108)
T ss_dssp CCCEEEEESCCCSCCCC--CEEEESCSEEESSSCEEECCHHHHHHHHHHSCCSSSCSSEEEEEEECCCCCHHHHHHHHHC
T ss_pred CCeEEEECcHHhcCCCCCCceEEEecCcccCccccccCCHHHHHHhhcccCCCCCCCceEEEEEecCCcCHHHHHHHhcC
Confidence 9999999999999999999999997765 347778999999999999 578888888765 44566666554
|
| >2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-42 Score=416.22 Aligned_cols=347 Identities=20% Similarity=0.236 Sum_probs=258.9
Q ss_pred CCCCCCCCCCCHHHHHHHHhcCCCCCCCHHHHHhHHh-hhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCe
Q psy15524 389 PTSYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQP-ILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGI 467 (930)
Q Consensus 389 ~~~f~~l~~l~~~~~~~l~~~~~~~~~~~iQ~~~i~~-il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~ 467 (930)
..+|+++ ++++.+.+.+.+ +||..|+|+|.++++. +.++++++++||||||||++|.+|+++.+.. .+.
T Consensus 7 ~~~~~~l-~l~~~~~~~l~~-~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~--------~~~ 76 (715)
T 2va8_A 7 WMPIEDL-KLPSNVIEIIKK-RGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLK--------NGG 76 (715)
T ss_dssp CCBGGGS-SSCHHHHHHHHT-TSCCBCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHHH--------SCS
T ss_pred cCcHHHc-CCCHHHHHHHHh-CCCCCCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHH--------CCC
Confidence 3569999 899999999975 8999999999999999 7789999999999999999999999988764 256
Q ss_pred eEEEEccCHHHHHHHHHHHHHhhccCCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhccCCcccccceEEE
Q psy15524 468 YAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLV 547 (930)
Q Consensus 468 ~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lV 547 (930)
+++|++|+++||.|+++.++.+. ..+ ..++.++|+...... ...+++|+|+|||+|..++.+ ....++++++||
T Consensus 77 ~il~i~P~r~La~q~~~~~~~~~-~~g-~~v~~~~G~~~~~~~---~~~~~~Iiv~Tpe~l~~~~~~-~~~~l~~~~~vI 150 (715)
T 2va8_A 77 KAIYVTPLRALTNEKYLTFKDWE-LIG-FKVAMTSGDYDTDDA---WLKNYDIIITTYEKLDSLWRH-RPEWLNEVNYFV 150 (715)
T ss_dssp EEEEECSCHHHHHHHHHHHGGGG-GGT-CCEEECCSCSSSCCG---GGGGCSEEEECHHHHHHHHHH-CCGGGGGEEEEE
T ss_pred eEEEEeCcHHHHHHHHHHHHHhh-cCC-CEEEEEeCCCCCchh---hcCCCCEEEEcHHHHHHHHhC-ChhHhhccCEEE
Confidence 89999999999999999995443 333 456667777654332 124789999999999998876 334478999999
Q ss_pred EecchhhhhcCcHHHHHHHHHHHhhcCccceEEEEccccCHHHHHHHhhhcCCCEEEEccCCCCcccCcccee-cC-CCc
Q psy15524 548 LDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLV-IP-DSL 625 (930)
Q Consensus 548 lDEah~l~~~g~~~~l~~i~~~l~~~~~~~q~vl~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~-~~~ 625 (930)
+||||.+.+.+++..+..++..++ +.|++++|||+++ ..+++.... .+. +........ ...... .+ ...
T Consensus 151 iDE~H~l~~~~~~~~l~~i~~~~~----~~~ii~lSATl~n-~~~~~~~l~-~~~-~~~~~r~~~--l~~~~~~~~~~~~ 221 (715)
T 2va8_A 151 LDELHYLNDPERGPVVESVTIRAK----RRNLLALSATISN-YKQIAKWLG-AEP-VATNWRPVP--LIEGVIYPERKKK 221 (715)
T ss_dssp ECSGGGGGCTTTHHHHHHHHHHHH----TSEEEEEESCCTT-HHHHHHHHT-CEE-EECCCCSSC--EEEEEEEECSSTT
T ss_pred EechhhcCCcccchHHHHHHHhcc----cCcEEEEcCCCCC-HHHHHHHhC-CCc-cCCCCCCCC--ceEEEEecCCccc
Confidence 999999998889999999888886 6899999999986 344444332 221 111100000 000000 00 000
Q ss_pred eEEEEEcC--------chhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCC--------------
Q psy15524 626 KQHFIVTP--------PKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGE-------------- 683 (930)
Q Consensus 626 ~~~~~~~~--------~~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~-------------- 683 (930)
........ .......+...+. .++++||||++++.++.+++.|.+....
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~ 292 (715)
T 2va8_A 222 EYNVIFKDNTTKKVHGDDAIIAYTLDSLS---------KNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQ 292 (715)
T ss_dssp EEEEEETTSCEEEEESSSHHHHHHHHHHT---------TTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHH
T ss_pred ceeeecCcchhhhcccchHHHHHHHHHHh---------cCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHH
Confidence 00111111 1222222222221 2689999999999999999988764321
Q ss_pred -------------------CceEEEecCCCCHHHHHHHHHHhhcCCCcEEEeccccccccCCCCccEEEE----ec----
Q psy15524 684 -------------------NIAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQ----YT---- 736 (930)
Q Consensus 684 -------------------~~~~~~lhg~~~~~~R~~v~~~F~~~~~~vLv~T~~~~~GlDip~v~~VI~----~~---- 736 (930)
...+..+||+|++++|..+++.|++|..+|||||+++++|+|+|++++||+ ||
T Consensus 293 ~~~i~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~r~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~~d~~~~ 372 (715)
T 2va8_A 293 LDDIEEGGSDEKELLKSLISKGVAYHHAGLSKALRDLIEEGFRQRKIKVIVATPTLAAGVNLPARTVIIGDIYRFNKKIA 372 (715)
T ss_dssp HHTCCSSCHHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTCSCEEEECGGGGGSSCCCBSEEEECCC--------
T ss_pred HHHhhhccccccHHHHHHHhcCEEEECCCCCHHHHHHHHHHHHcCCCeEEEEChHHhcccCCCceEEEEeCCeeccccCC
Confidence 124777899999999999999999999999999999999999999999999 88
Q ss_pred ---CCCChhhHHhhhcccccCCC--CceEEEEeCcccH
Q psy15524 737 ---APSSSTDYVHRVGRTARVGH--EGSSLLFLIPSEV 769 (930)
Q Consensus 737 ---~p~s~~~y~qr~GRagR~g~--~g~~~~~~~~~e~ 769 (930)
.|.+..+|.||+|||||.|. .|.|++++.+.+.
T Consensus 373 ~~~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~ 410 (715)
T 2va8_A 373 GYYDEIPIMEYKQMSGRAGRPGFDQIGESIVVVRDKED 410 (715)
T ss_dssp ------CHHHHHHHHTTBCCTTTCSCEEEEEECSCGGG
T ss_pred CCCCcCCHHHHHHHhhhcCCCCCCCCceEEEEeCCchH
Confidence 89999999999999999984 7999999887663
|
| >2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.3e-42 Score=414.63 Aligned_cols=337 Identities=22% Similarity=0.247 Sum_probs=263.2
Q ss_pred CCCCCCCCCHHHHHHHHhcCCCCCCCHHHHHhHHh-hhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeE
Q psy15524 391 SYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQP-ILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYA 469 (930)
Q Consensus 391 ~f~~l~~l~~~~~~~l~~~~~~~~~~~iQ~~~i~~-il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~ 469 (930)
+|+++ ++++.+.+.+.+ +||..|+|+|.++++. +.++++++++||||||||++|.+|+++.+... +.++
T Consensus 2 ~f~~l-~l~~~~~~~l~~-~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~--------~~~~ 71 (720)
T 2zj8_A 2 RVDEL-RVDERIKSTLKE-RGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILTQ--------GGKA 71 (720)
T ss_dssp BGGGC-CSCHHHHHHHHH-TTCCBCCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHHHHHHHH--------CSEE
T ss_pred cHhhc-CCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhcCCCcEEEEcCCccHHHHHHHHHHHHHHHhC--------CCEE
Confidence 58899 899999999985 8999999999999998 88999999999999999999999999888641 5789
Q ss_pred EEEccCHHHHHHHHHHHHHhhccCCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhccCCcccccceEEEEe
Q psy15524 470 VIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLD 549 (930)
Q Consensus 470 lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlD 549 (930)
+|++|+++||.|+++.++++.. ++ ..++.++|+...... ...+++|+|+|||+|..++.+ ....++++++||+|
T Consensus 72 l~i~P~raLa~q~~~~~~~l~~-~g-~~v~~~~G~~~~~~~---~~~~~~Iiv~Tpe~l~~~~~~-~~~~l~~~~~vIiD 145 (720)
T 2zj8_A 72 VYIVPLKALAEEKFQEFQDWEK-IG-LRVAMATGDYDSKDE---WLGKYDIIIATAEKFDSLLRH-GSSWIKDVKILVAD 145 (720)
T ss_dssp EEECSSGGGHHHHHHHTGGGGG-GT-CCEEEECSCSSCCCG---GGGGCSEEEECHHHHHHHHHH-TCTTGGGEEEEEEE
T ss_pred EEEcCcHHHHHHHHHHHHHHHh-cC-CEEEEecCCCCcccc---ccCCCCEEEECHHHHHHHHHc-ChhhhhcCCEEEEE
Confidence 9999999999999999965443 33 456677776544322 134689999999999988876 33447899999999
Q ss_pred cchhhhhcCcHHHHHHHHHHHhhcCccceEEEEccccCHHHHHHHhhhcCCCEEEEccCCCCcccCccceecCCCceEEE
Q psy15524 550 EADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHF 629 (930)
Q Consensus 550 Eah~l~~~g~~~~l~~i~~~l~~~~~~~q~vl~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 629 (930)
|||++.+++++..+..++..++. ..|++++|||+++ ..++.... ..+. +..... |..+...+
T Consensus 146 E~H~l~~~~r~~~~~~ll~~l~~---~~~ii~lSATl~n-~~~~~~~l-~~~~-~~~~~r------------p~~l~~~~ 207 (720)
T 2zj8_A 146 EIHLIGSRDRGATLEVILAHMLG---KAQIIGLSATIGN-PEELAEWL-NAEL-IVSDWR------------PVKLRRGV 207 (720)
T ss_dssp TGGGGGCTTTHHHHHHHHHHHBT---TBEEEEEECCCSC-HHHHHHHT-TEEE-EECCCC------------SSEEEEEE
T ss_pred CCcccCCCcccHHHHHHHHHhhc---CCeEEEEcCCcCC-HHHHHHHh-CCcc-cCCCCC------------CCcceEEE
Confidence 99999998999999999998874 7899999999986 34444433 2111 111000 01111111
Q ss_pred ------EEcC-----chhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCC---------------
Q psy15524 630 ------IVTP-----PKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGE--------------- 683 (930)
Q Consensus 630 ------~~~~-----~~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~--------------- 683 (930)
.... .......+...+. .++++||||++++.++.++..|.+....
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~ 278 (720)
T 2zj8_A 208 FYQGFVTWEDGSIDRFSSWEELVYDAIR---------KKKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELAD 278 (720)
T ss_dssp EETTEEEETTSCEEECSSTTHHHHHHHH---------TTCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHH
T ss_pred EeCCeeeccccchhhhhHHHHHHHHHHh---------CCCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHH
Confidence 1111 1222333333332 1689999999999999998888754211
Q ss_pred ---------------CceEEEecCCCCHHHHHHHHHHhhcCCCcEEEeccccccccCCCCccEEEE----ec----CCCC
Q psy15524 684 ---------------NIAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQ----YT----APSS 740 (930)
Q Consensus 684 ---------------~~~~~~lhg~~~~~~R~~v~~~F~~~~~~vLv~T~~~~~GlDip~v~~VI~----~~----~p~s 740 (930)
...+..+||+|++++|..+++.|++|..+|||||+++++|+|+|++++||+ || .|.+
T Consensus 279 ~i~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gvdip~~~~VI~~~~~yd~~g~~~~s 358 (720)
T 2zj8_A 279 SLEENPTNEKLAKAIRGGVAFHHAGLGRDERVLVEENFRKGIIKAVVATPTLSAGINTPAFRVIIRDIWRYSDFGMERIP 358 (720)
T ss_dssp TSCSCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTSSCEEEECSTTGGGCCCCBSEEEECCSEECCSSSCEECC
T ss_pred HHhcccchHHHHHHHhcCeeeecCCCCHHHHHHHHHHHHCCCCeEEEECcHhhccCCCCceEEEEcCCeeecCCCCccCC
Confidence 123777899999999999999999999999999999999999999999998 76 6899
Q ss_pred hhhHHhhhcccccCCC--CceEEEEeCcccHH
Q psy15524 741 STDYVHRVGRTARVGH--EGSSLLFLIPSEVK 770 (930)
Q Consensus 741 ~~~y~qr~GRagR~g~--~g~~~~~~~~~e~~ 770 (930)
..+|+||+|||||.|. .|.|++++.+.+..
T Consensus 359 ~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~~ 390 (720)
T 2zj8_A 359 IIEVHQMLGRAGRPKYDEVGEGIIVSTSDDPR 390 (720)
T ss_dssp HHHHHHHHTTBCCTTTCSEEEEEEECSSSCHH
T ss_pred HHHHHHHHhhcCCCCCCCCceEEEEecCccHH
Confidence 9999999999999984 78899999887744
|
| >4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-42 Score=427.93 Aligned_cols=328 Identities=19% Similarity=0.245 Sum_probs=256.1
Q ss_pred HHHHHHhcCCCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHH
Q psy15524 402 MKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQ 481 (930)
Q Consensus 402 ~~~~l~~~~~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q 481 (930)
..+.+...+|| .|||+|.++||.++.|+|++++||||||||++|++|++..+. .+.++|||+||++||.|
T Consensus 67 ~~~~~~~~~gf-~pt~iQ~~ai~~il~g~dvlv~ApTGSGKTl~~l~~il~~~~---------~~~~~Lil~PtreLa~Q 136 (1104)
T 4ddu_A 67 FRSFFKKKFGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLAR---------KGKKSALVFPTVTLVKQ 136 (1104)
T ss_dssp HHHHHHHHSSS-CCCHHHHHHHHHHTTTCCEEECCSTTCCHHHHHHHHHHHHHT---------TTCCEEEEESSHHHHHH
T ss_pred HHHHHHHhcCC-CCCHHHHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHHHHHh---------cCCeEEEEechHHHHHH
Confidence 34455556788 699999999999999999999999999999998888887762 37789999999999999
Q ss_pred HHHHHHHhhccCCCcceEEEeCCCch---HHHHHHHhcC-CcEEEECchhHHHhhhccCCcccccceEEEEecchh----
Q psy15524 482 TLEIFTKLCKSFTWIVPSWLTGGEKM---KSEKARIRKG-ISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADR---- 553 (930)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~~~gg~~~---~~~~~~~~~~-~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~---- 553 (930)
+++.+.++. ...+.+..++||... ..+...+..+ ++|+|+|||+|.+++.. +.++++++||+||||+
T Consensus 137 ~~~~l~~l~--~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~---l~~~~l~~lViDEaH~l~~~ 211 (1104)
T 4ddu_A 137 TLERLQKLA--DEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK---LSQKRFDFVFVDDVDAVLKA 211 (1104)
T ss_dssp HHHHHHTTS--CTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHH---HHTSCCSEEEESCHHHHTTS
T ss_pred HHHHHHHhh--CCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHh---hcccCcCEEEEeCCCccccc
Confidence 999999966 344567888998876 5666777766 99999999999988864 5678999999999965
Q ss_pred ------hhh-cCcHHH-HHHHHHHHhh------c--CccceEEEEccc-cCHHHH-HHHhhhcCCCEEEEccCCCCcccC
Q psy15524 554 ------ILD-QGYERD-IAEFLEILKK------Q--KPQFQSILLSAT-LTPAVQ-RLAGMTLQNPIQIDAADSTDIHNT 615 (930)
Q Consensus 554 ------l~~-~g~~~~-l~~i~~~l~~------~--~~~~q~vl~SAT-~~~~~~-~l~~~~~~~~~~i~~~~~~~~~~~ 615 (930)
+++ +||... +..++..++. . ....|+++|||| .|..+. .+....+. +.+..
T Consensus 212 ~r~~Dr~L~~~gf~~~~i~~il~~l~~~~~~~~~~~~~~~q~ll~SAT~~p~~~~~~~~~~~l~----i~v~~------- 280 (1104)
T 4ddu_A 212 SRNIDTLLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN----FTVGR------- 280 (1104)
T ss_dssp SHHHHHHHHTSSCCHHHHHHHHHHHHHTSCCCCCSSCCCCEEEEECBSSCCCSSTTHHHHHHTC----CCCCB-------
T ss_pred cccchhhhHhcCCCHHHHHHHHHhcccchhhhhhccCCCceEEEEcCCCCcHHHHHHHhhccee----EEecc-------
Confidence 455 888887 8888888861 1 147899999999 454433 22222222 11111
Q ss_pred ccceecCCCceEEEEEcCchhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCCceEE-EecCCC
Q psy15524 616 TDSLVIPDSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFF-KLHGSM 694 (930)
Q Consensus 616 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~-~lhg~~ 694 (930)
....+..+.+.+..+ .+...+..++... ++++||||++++.++.+++.|... ++.+. .+||
T Consensus 281 --~~~~~~~i~~~~~~~---~k~~~L~~ll~~~--------~~~~LVF~~s~~~a~~l~~~L~~~---g~~~~~~lhg-- 342 (1104)
T 4ddu_A 281 --LVSVARNITHVRISS---RSKEKLVELLEIF--------RDGILIFAQTEEEGKELYEYLKRF---KFNVGETWSE-- 342 (1104)
T ss_dssp --CCCCCCCEEEEEESC---CCHHHHHHHHHHH--------CSSEEEEESSSHHHHHHHHHHHHT---TCCEEESSSS--
T ss_pred --CCCCcCCceeEEEec---CHHHHHHHHHHhc--------CCCEEEEECcHHHHHHHHHHHHhC---CCCeeeEecC--
Confidence 112345566666655 3445555565542 579999999999999999999885 78887 8999
Q ss_pred CHHHHHHHHHHhhcCCCcEEEe----ccccccccCCCC-ccEEEEecCCC------------------------------
Q psy15524 695 SQSERTEVFKTFRSVKSGVLIC----TDVAARGLDLPL-VDWIVQYTAPS------------------------------ 739 (930)
Q Consensus 695 ~~~~R~~v~~~F~~~~~~vLv~----T~~~~~GlDip~-v~~VI~~~~p~------------------------------ 739 (930)
+|.+ +++|++|+.+|||| |++++||+|+|+ |++||+||+|.
T Consensus 343 ---~rr~-l~~F~~G~~~VLVatas~TdvlarGIDip~~V~~VI~~d~P~~~~Sle~~~~~~~~~~~l~~l~~~~~~~~~ 418 (1104)
T 4ddu_A 343 ---FEKN-FEDFKVGKINILIGVQAYYGKLTRGVDLPERIKYVIFWGTPSMRFSLELDKAPRFVLARVLKEMGLIKAQEN 418 (1104)
T ss_dssp ---HHHH-HHHHHHTSCSEEEEETTTHHHHCCSCCCTTTCCEEEEESCCEEEEECSSSSCCHHHHHHHHHHHSSCSSCCC
T ss_pred ---cHHH-HHHHHCCCCCEEEEecCCCCeeEecCcCCCCCCEEEEECCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHH
Confidence 2555 99999999999999 999999999999 99999999998
Q ss_pred ------------------------------------------ChhhHHhhhcccccCCCCc--eEEEEeCcccHHHHHHH
Q psy15524 740 ------------------------------------------SSTDYVHRVGRTARVGHEG--SSLLFLIPSEVKLVEEL 775 (930)
Q Consensus 740 ------------------------------------------s~~~y~qr~GRagR~g~~g--~~~~~~~~~e~~~~~~l 775 (930)
+..+|+||+|||||.|..| .++.++..++...++.|
T Consensus 419 ~~~~~~~e~~~~~l~~~~~~~~i~~~~~~l~~~~~~~~~~~pd~~tYihr~GRtgR~~~gg~~~Glsi~~~~d~~~~~~l 498 (1104)
T 4ddu_A 419 PDVEELRKIAKEHLTQKEFVEKVKEMFRGVVVKDEDLELIIPDVYTYIQASGRSSRILNGVLVKGVSVIFEEDEEIFESL 498 (1104)
T ss_dssp CHHHHHHHHHHHCCCHHHHHHHHHHHCCSSEEETTTTEEEEECHHHHHHHHHTTCCEETTEECCEEEEEECCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHhhccceEEecCCeeEEEecChhhhhcccCchhcccCCCcccceEEEEEecHHHHHHH
Confidence 7889999999999976533 34555555777776666
Q ss_pred Hh
Q psy15524 776 QN 777 (930)
Q Consensus 776 ~~ 777 (930)
++
T Consensus 499 ~~ 500 (1104)
T 4ddu_A 499 KT 500 (1104)
T ss_dssp HH
T ss_pred HH
Confidence 54
|
| >2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-42 Score=420.18 Aligned_cols=347 Identities=19% Similarity=0.231 Sum_probs=261.1
Q ss_pred CCCCCCC--CCHHHHHHHHhcCCCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCee
Q psy15524 391 SYEEFPG--IHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIY 468 (930)
Q Consensus 391 ~f~~l~~--l~~~~~~~l~~~~~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~ 468 (930)
+|+++ + +++.+.+.+. .+||.+|+|+|.++++.++++++++++||||||||++|.+|+++.+.. +.+
T Consensus 2 ~f~~l-~~~l~~~~~~~l~-~~g~~~l~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~~l~il~~~~~---------~~~ 70 (702)
T 2p6r_A 2 KVEEL-AESISSYAVGILK-EEGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIK---------GGK 70 (702)
T ss_dssp CSHHH-HHHHHHHHHHHHH-CC---CCCCCCHHHHHHHTTCSCEEEECSSHHHHHHHHHHHHHHHHHT---------TCC
T ss_pred chhhh-hhccCHHHHHHHH-hCCCCCCCHHHHHHHHHHhCCCcEEEEcCCccHHHHHHHHHHHHHHHh---------CCc
Confidence 57777 6 8999999997 489999999999999999999999999999999999999999988753 568
Q ss_pred EEEEccCHHHHHHHHHHHHHhhccCCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhccCCcccccceEEEE
Q psy15524 469 AVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVL 548 (930)
Q Consensus 469 ~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVl 548 (930)
++|++|+++||.|+++.++.+. .. ...++.++|+...... ...+++|+|+|||+|..++.+. ...++++++||+
T Consensus 71 ~l~i~P~r~La~q~~~~~~~~~-~~-g~~v~~~~G~~~~~~~---~~~~~~Iiv~Tpe~l~~~l~~~-~~~l~~~~~vIi 144 (702)
T 2p6r_A 71 SLYVVPLRALAGEKYESFKKWE-KI-GLRIGISTGDYESRDE---HLGDCDIIVTTSEKADSLIRNR-ASWIKAVSCLVV 144 (702)
T ss_dssp EEEEESSHHHHHHHHHHHTTTT-TT-TCCEEEECSSCBCCSS---CSTTCSEEEEEHHHHHHHHHTT-CSGGGGCCEEEE
T ss_pred EEEEeCcHHHHHHHHHHHHHHH-hc-CCEEEEEeCCCCcchh---hccCCCEEEECHHHHHHHHHcC-hhHHhhcCEEEE
Confidence 9999999999999999995443 33 3456677777654332 1247899999999999988873 344789999999
Q ss_pred ecchhhhhcCcHHHHHHHHHHHhhcCccceEEEEccccCHHHHHHHhhhcCCCEEEEccCCCCcccCccceecCCCceEE
Q psy15524 549 DEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQH 628 (930)
Q Consensus 549 DEah~l~~~g~~~~l~~i~~~l~~~~~~~q~vl~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 628 (930)
||||++.+++++..+..++..+....++.|++++|||+++ ..+++... ..+. +...... ........... ...
T Consensus 145 DE~H~l~~~~r~~~~~~ll~~l~~~~~~~~ii~lSATl~n-~~~~~~~l-~~~~-~~~~~r~---~~l~~~~~~~~-~~~ 217 (702)
T 2p6r_A 145 DEIHLLDSEKRGATLEILVTKMRRMNKALRVIGLSATAPN-VTEIAEWL-DADY-YVSDWRP---VPLVEGVLCEG-TLE 217 (702)
T ss_dssp TTGGGGGCTTTHHHHHHHHHHHHHHCTTCEEEEEECCCTT-HHHHHHHT-TCEE-EECCCCS---SCEEEEEECSS-EEE
T ss_pred eeeeecCCCCcccHHHHHHHHHHhcCcCceEEEECCCcCC-HHHHHHHh-CCCc-ccCCCCC---ccceEEEeeCC-eee
Confidence 9999999999999999999888766678999999999986 45555433 3222 1111100 00000000000 001
Q ss_pred EEEcCc----h-hhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCC--------------------
Q psy15524 629 FIVTPP----K-LRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGE-------------------- 683 (930)
Q Consensus 629 ~~~~~~----~-~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~-------------------- 683 (930)
+..... . .....+...+. .++++||||++++.++.++..|.+.+..
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~ 288 (702)
T 2p6r_A 218 LFDGAFSTSRRVKFEELVEECVA---------ENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMS 288 (702)
T ss_dssp EEETTEEEEEECCHHHHHHHHHH---------TTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHH
T ss_pred ccCcchhhhhhhhHHHHHHHHHh---------cCCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhcccccc
Confidence 111000 0 02233333322 2689999999999999998888754211
Q ss_pred -------CceEEEecCCCCHHHHHHHHHHhhcCCCcEEEeccccccccCCCCccEEEE----ec---CCCChhhHHhhhc
Q psy15524 684 -------NIAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQ----YT---APSSSTDYVHRVG 749 (930)
Q Consensus 684 -------~~~~~~lhg~~~~~~R~~v~~~F~~~~~~vLv~T~~~~~GlDip~v~~VI~----~~---~p~s~~~y~qr~G 749 (930)
+..+..+||+|++++|..+++.|++|+.+|||||+++++|+|+|++++||+ || .|.+..+|+||+|
T Consensus 289 ~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~yd~~~~~~s~~~~~Qr~G 368 (702)
T 2p6r_A 289 RKLAECVRKGAAFHHAGLLNGQRRVVEDAFRRGNIKVVVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAG 368 (702)
T ss_dssp HHHHHHHHTTCCEECTTSCHHHHHHHHHHHHTTSCCEEEECSTTTSSSCCCBSEEEECCSEEESSSEEECCHHHHHHHHT
T ss_pred HHHHHHHhcCeEEecCCCCHHHHHHHHHHHHCCCCeEEEECcHHhccCCCCceEEEEcCceeeCCCCCcCCHHHHHHHhh
Confidence 123556799999999999999999999999999999999999999999999 66 7899999999999
Q ss_pred ccccCCC--CceEEEEeCcccHH
Q psy15524 750 RTARVGH--EGSSLLFLIPSEVK 770 (930)
Q Consensus 750 RagR~g~--~g~~~~~~~~~e~~ 770 (930)
||||.|. .|.|++++.+.+..
T Consensus 369 RaGR~g~~~~G~~~~l~~~~~~~ 391 (702)
T 2p6r_A 369 RAGRPGMDERGEAIIIVGKRDRE 391 (702)
T ss_dssp TBSCTTTCSCEEEEEECCGGGHH
T ss_pred hcCCCCCCCCceEEEEecCccHH
Confidence 9999984 78999999888744
|
| >4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-42 Score=441.65 Aligned_cols=390 Identities=20% Similarity=0.264 Sum_probs=290.6
Q ss_pred CCCCCCHHHHHhHHhhhc-CCcEEEEccCCCchhHHhhHHHHHHHHhhCc--ccCCCCCeeEEEEccCHHHHHHHHHHHH
Q psy15524 411 NITQVTTVQQLSIQPILD-GGDVLVRSQTGSGKTLAYAIPIIQKLQEMRP--KISRKDGIYAVIILPTRELALQTLEIFT 487 (930)
Q Consensus 411 ~~~~~~~iQ~~~i~~il~-~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~--~~~~~~~~~~lil~PtreLa~Q~~~~~~ 487 (930)
||++++++|++++|.++. ++|++++||||||||++|.+|+++.+.+... .....++.++||++|+++||.|+++.|.
T Consensus 76 g~~~ln~iQs~~~~~al~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~kALa~e~~~~l~ 155 (1724)
T 4f92_B 76 GFKTLNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSFG 155 (1724)
T ss_dssp TCSBCCHHHHHTHHHHHTCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSSHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEECCHHHHHHHHHHHHH
Confidence 799999999999999885 6789999999999999999999999976422 1223467899999999999999999999
Q ss_pred HhhccCCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhccCC-cccccceEEEEecchhhhhcCcHHHHHHH
Q psy15524 488 KLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTET-LKFSKVEHLVLDEADRILDQGYERDIAEF 566 (930)
Q Consensus 488 ~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~-~~~~~l~~lVlDEah~l~~~g~~~~l~~i 566 (930)
+.+...+ +.++.++|+...... ...+++|+|+|||+|..++++... ..++++++||+||+|.+.+ .++..++.+
T Consensus 156 ~~~~~~g-i~V~~~tGd~~~~~~---~~~~~~IlVtTpEkld~llr~~~~~~~l~~v~~vIiDEvH~l~d-~RG~~lE~~ 230 (1724)
T 4f92_B 156 KRLATYG-ITVAELTGDHQLCKE---EISATQIIVCTPEKWDIITRKGGERTYTQLVRLIILDEIHLLHD-DRGPVLEAL 230 (1724)
T ss_dssp HHHTTTT-CCEEECCSSCSSCCT---TGGGCSEEEECHHHHHHHTTSSTTHHHHTTEEEEEETTGGGGGS-TTHHHHHHH
T ss_pred HHHhhCC-CEEEEEECCCCCCcc---ccCCCCEEEECHHHHHHHHcCCccchhhcCcCEEEEecchhcCC-ccHHHHHHH
Confidence 9887765 456778888754332 235689999999999777765432 2478999999999998866 567776666
Q ss_pred HHHH----hhcCccceEEEEccccCHHHHHHHhhhcCCCE-EEEccCCCCcccCccceecCCCceEEEEEcCchh---hH
Q psy15524 567 LEIL----KKQKPQFQSILLSATLTPAVQRLAGMTLQNPI-QIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKL---RL 638 (930)
Q Consensus 567 ~~~l----~~~~~~~q~vl~SAT~~~~~~~l~~~~~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ 638 (930)
+.++ ....+..|+|++|||+|+ ..+++++.-.++. .+.... ....|..+.+.+....... +.
T Consensus 231 l~rl~~~~~~~~~~~riI~LSATl~N-~~dvA~wL~~~~~~~~~~~~---------~~~RPvpL~~~~~~~~~~~~~~~~ 300 (1724)
T 4f92_B 231 VARAIRNIEMTQEDVRLIGLSATLPN-YEDVATFLRVDPAKGLFYFD---------NSFRPVPLEQTYVGITEKKAIKRF 300 (1724)
T ss_dssp HHHHHHHHHHHTCCCEEEEEECSCTT-HHHHHHHTTCCHHHHEEECC---------GGGCSSCEEEECCEECCCCHHHHH
T ss_pred HHHHHHHHHhCCCCCcEEEEecccCC-HHHHHHHhCCCCCCCeEEEC---------CCCccCccEEEEeccCCcchhhhh
Confidence 6543 334568899999999986 4555554332210 000000 1123445666665444432 22
Q ss_pred HHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCC----------------------------------C
Q psy15524 639 VALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGE----------------------------------N 684 (930)
Q Consensus 639 ~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~----------------------------------~ 684 (930)
..+...+........ .++++||||+|++.++..++.|.+.... .
T Consensus 301 ~~~~~~~~~~v~~~~--~~~~~LVF~~sR~~~~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 378 (1724)
T 4f92_B 301 QIMNEIVYEKIMEHA--GKNQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLP 378 (1724)
T ss_dssp HHHHHHHHHHHTTCC--SSCCEEEECSSTTTTHHHHHHHHHHHHHTTSTTCCSSCCTTCSSHHHHTTSCCSTHHHHHHTT
T ss_pred HHHHHHHHHHHHHHh--cCCcEEEECCCHHHHHHHHHHHHHHHhhccchhhhcccchhHHHHHHhhhcccccHHHHHHhh
Confidence 233333332222211 2578999999999998887776542100 1
Q ss_pred ceEEEecCCCCHHHHHHHHHHhhcCCCcEEEeccccccccCCCCccEEEE----ec------CCCChhhHHhhhcccccC
Q psy15524 685 IAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQ----YT------APSSSTDYVHRVGRTARV 754 (930)
Q Consensus 685 ~~~~~lhg~~~~~~R~~v~~~F~~~~~~vLv~T~~~~~GlDip~v~~VI~----~~------~p~s~~~y~qr~GRagR~ 754 (930)
.++..+||+|++++|..+++.|++|.++|||||+++++|||+|++++||. |+ .|.++.+|.||+|||||.
T Consensus 379 ~Gva~HHagL~~~~R~~vE~~F~~G~i~vlvaTsTLa~GVNlPa~~vVI~~~~~~~~~~~~~~~ls~~~~~Qm~GRAGR~ 458 (1724)
T 4f92_B 379 YGFAIHHAGMTRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALDILQMLGRAGRP 458 (1724)
T ss_dssp TTEEEECSSSCTHHHHHHHHHHHTTCCCEEEECHHHHHHSCCCBSEEEEECCEEEETTTTEEEECCHHHHHHHHTTBSCT
T ss_pred cCEEEEcCCCCHHHHHHHHHHHHCCCCeEEEEcchhHhhCCCCCceEEEeCCEEecCcCCCcccCCHHHHHHhhhhccCC
Confidence 23556699999999999999999999999999999999999999999996 44 356899999999999999
Q ss_pred CC--CceEEEEeCcccHHHHHHHHhcCCccchhchHHHHHhhhhhhccCccccccccchHHHHHHHHHHH
Q psy15524 755 GH--EGSSLLFLIPSEVKLVEELQNRRIRIEEIKLKDCLQNLLSVKMEGDLSRLADGNVETAATALQMSF 822 (930)
Q Consensus 755 g~--~g~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 822 (930)
|. .|.++++..+.+..++..+.....++++.....+.+.+++++..|.... .+++..|+...+
T Consensus 459 g~d~~G~~ii~~~~~~~~~~~~ll~~~~pieS~l~~~l~d~L~aeI~~g~i~~-----~~~a~~~l~~T~ 523 (1724)
T 4f92_B 459 QYDTKGEGILITSHGELQYYLSLLNQQLPIESQMVSKLPDMLNAEIVLGNVQN-----AKDAVNWLGYAY 523 (1724)
T ss_dssp TTCSCEEEEEEEESTTCCHHHHHTTTCSCCCCCTTTTHHHHHHHHHHHTSCCB-----HHHHHHHHHHSH
T ss_pred CCCCccEEEEEecchhHHHHHHHHcCCCcchhhccccHHHHHHHHHHHhhcCC-----HHHHHHHHhccH
Confidence 86 6999999999998888888888888888777778888888877776643 456666776554
|
| >4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-42 Score=406.72 Aligned_cols=345 Identities=17% Similarity=0.205 Sum_probs=200.3
Q ss_pred CCCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHHHHh
Q psy15524 410 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKL 489 (930)
Q Consensus 410 ~~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~ 489 (930)
++..+|+|+|.++++.++.|+|+++.+|||||||++|++|+++.+.... ...+.++|||+||++|+.|+++.+.++
T Consensus 3 ~~~~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~----~~~~~~~lil~P~~~L~~q~~~~~~~~ 78 (556)
T 4a2p_A 3 METKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMP----AGRKAKVVFLATKVPVYEQQKNVFKHH 78 (556)
T ss_dssp -----CCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCC----SSCCCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHHhCc----ccCCCeEEEEeCCHHHHHHHHHHHHHH
Confidence 4556899999999999999999999999999999999999999887521 123778999999999999999999999
Q ss_pred hccCCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhccCCcccccceEEEEecchhhhhcCcHHHH-HHHHH
Q psy15524 490 CKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDI-AEFLE 568 (930)
Q Consensus 490 ~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~l~~~g~~~~l-~~i~~ 568 (930)
+...+ ..+..++|+.........+..+++|+|+||++|.+++.......+.++++||+||||++.+++....+ ..++.
T Consensus 79 ~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~ 157 (556)
T 4a2p_A 79 FERQG-YSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLE 157 (556)
T ss_dssp HGGGT-CCEEECCCC-----CHHHHHHHCSEEEECHHHHHHHHHSSSCCCSTTCSEEEEETGGGCSTTSHHHHHHHHHHH
T ss_pred hcccC-ceEEEEeCCCCcchhHHHhhCCCCEEEECHHHHHHHHHhCcccccccCCEEEEECCcccCCcchHHHHHHHHHH
Confidence 87543 45666788876666566666789999999999999987743336889999999999999988753332 12221
Q ss_pred -HHhhcCccceEEEEccccCH-----------HHHHHHhhhcCCCEEEEccCCCCcccCccceecCCCceEEEEEc----
Q psy15524 569 -ILKKQKPQFQSILLSATLTP-----------AVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVT---- 632 (930)
Q Consensus 569 -~l~~~~~~~q~vl~SAT~~~-----------~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 632 (930)
.+....+..|++++|||++. .+..+.... . ...+........ .... ....... .+...
T Consensus 158 ~~~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~i~~l~~~l-~-~~~~~~~~~~~~-~~~~--~~~~~~~-~~~~~~~~~ 231 (556)
T 4a2p_A 158 QKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYL-D-IQAISTVRENIQ-ELQR--FMNKPEI-DVRLVKRRI 231 (556)
T ss_dssp HHHCC---CCEEEEEESCCCCTTCSSHHHHHHHHHHHHHHH-T-CSEEECCCTTHH-HHHH--HTCCCCE-EEEECCCCS
T ss_pred hhhcccCCCCeEEEEeCCcccCchhhHHHHHHHHHHHHHhc-C-CeEecchhcchH-HHHh--cCCCCce-EEEEcCCCc
Confidence 12222346899999999953 121221111 1 111111000000 0000 0000000 00000
Q ss_pred --------------------------------------------------------------------------------
Q psy15524 633 -------------------------------------------------------------------------------- 632 (930)
Q Consensus 633 -------------------------------------------------------------------------------- 632 (930)
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 311 (556)
T 4a2p_A 232 HNPFAAIISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKY 311 (556)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHCC---------CCCSSHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccchhhHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHH
Confidence
Q ss_pred ---------------------------------------------------------CchhhHHHHHHHHHhhccCCCcC
Q psy15524 633 ---------------------------------------------------------PPKLRLVALASFILGKCQNVNED 655 (930)
Q Consensus 633 ---------------------------------------------------------~~~~~~~~l~~~l~~~~~~~~~~ 655 (930)
....|...+...+...... .
T Consensus 312 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~~l~~~~~~---~ 388 (556)
T 4a2p_A 312 NDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRY---N 388 (556)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTHHHHHHHHHCSSSCCHHHHHHHHHHHHHHHH---C
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhHHHHhhhhccCCCCCChHHHHHHHHHHHHhcC---C
Confidence 0123444455555433211 2
Q ss_pred CCceEEEEecchhhHHHHHHHHhhhc---------CCCceEEEecCCCCHHHHHHHHHHhhc-CCCcEEEeccccccccC
Q psy15524 656 EESKMLVFMATQDMADYHTELLSTVL---------GENIAFFKLHGSMSQSERTEVFKTFRS-VKSGVLICTDVAARGLD 725 (930)
Q Consensus 656 ~~~k~iVF~~s~~~~~~~~~~l~~~~---------~~~~~~~~lhg~~~~~~R~~v~~~F~~-~~~~vLv~T~~~~~GlD 725 (930)
.+.++||||++++.++.+++.|.+.. -.|.....+||+|++.+|..++++|++ |+.+|||||+++++|+|
T Consensus 389 ~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GiD 468 (556)
T 4a2p_A 389 PQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGID 468 (556)
T ss_dssp TTCCEEEEESSHHHHHHHHHHHTTCSGGGSCCEEC------------------------------CCEEEEEC-------
T ss_pred CCceEEEEEccHHHHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhcccCceEEEEEcCchhcCCC
Confidence 36899999999999999999997641 014455667899999999999999999 99999999999999999
Q ss_pred CCCccEEEEecCCCChhhHHhhhcccccCCCCceEEEEeCcccHH
Q psy15524 726 LPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPSEVK 770 (930)
Q Consensus 726 ip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~e~~ 770 (930)
+|++++||+||+|.++..|+||+|| ||. ++|.+++|+.+.+..
T Consensus 469 ip~v~~VI~~d~p~s~~~~~Qr~GR-gR~-~~g~~~~l~~~~~~~ 511 (556)
T 4a2p_A 469 IVQCNLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEVV 511 (556)
T ss_dssp ----CEEEEETCCSCHHHHHHC----------CCEEEEESCHHHH
T ss_pred chhCCEEEEeCCCCCHHHHHHhcCC-CCC-CCceEEEEEeCcchH
Confidence 9999999999999999999999999 998 789999999987654
|
| >3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-41 Score=400.35 Aligned_cols=346 Identities=16% Similarity=0.201 Sum_probs=228.9
Q ss_pred CCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHHHHhhccC
Q psy15524 414 QVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSF 493 (930)
Q Consensus 414 ~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~ 493 (930)
+|+|+|.++++.++.|+|+++.+|||||||++|++|+++.+.... ...+.++|||+||++|+.|+++.+.+++...
T Consensus 4 ~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~----~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~ 79 (555)
T 3tbk_A 4 KPRNYQLELALPAKKGKNTIICAPTGCGKTFVSLLICEHHLKKFP----CGQKGKVVFFANQIPVYEQQATVFSRYFERL 79 (555)
T ss_dssp CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCC----SSCCCCEEEECSSHHHHHHHHHHHHHHHHTT
T ss_pred CCcHHHHHHHHHHhCCCCEEEEeCCCChHHHHHHHHHHHHHHhcc----cCCCCEEEEEeCCHHHHHHHHHHHHHHhccC
Confidence 699999999999999999999999999999999999999887631 1237789999999999999999999998754
Q ss_pred CCcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhccCCcccccceEEEEecchhhhhcCcH-HHHHHHHHHHhh
Q psy15524 494 TWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYE-RDIAEFLEILKK 572 (930)
Q Consensus 494 ~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~l~~~g~~-~~l~~i~~~l~~ 572 (930)
+ ..+..++|+.........+..+++|+|+||++|.+++.......+.+++++|+||||++.+.+.. ..+...+.....
T Consensus 80 ~-~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~~ 158 (555)
T 3tbk_A 80 G-YNIASISGATSDSVSVQHIIEDNDIIILTPQILVNNLNNGAIPSLSVFTLMIFDECHNTSKNHPYNQIMFRYLDHKLG 158 (555)
T ss_dssp T-CCEEEECTTTGGGSCHHHHHHHCSEEEECHHHHHHHHHTSSSCCGGGCSEEEETTGGGCSTTCHHHHHHHHHHHHHTS
T ss_pred C-cEEEEEcCCCcchhhHHHHhcCCCEEEECHHHHHHHHhcCcccccccCCEEEEECccccCCcchHHHHHHHHHHhhhc
Confidence 3 45677888887666666666789999999999999987744336889999999999999887632 222222222111
Q ss_pred --cCccceEEEEccccCHH-----------HHHHHhhhcCCCEEEEccCCCCcccCccceecCCCceEEEEEc-------
Q psy15524 573 --QKPQFQSILLSATLTPA-----------VQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVT------- 632 (930)
Q Consensus 573 --~~~~~q~vl~SAT~~~~-----------~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 632 (930)
..+..|++++|||++.. +..+... +..+ .+........ ..... ..... ..+..+
T Consensus 159 ~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~~~~l~~~-l~~~-~~~~~~~~~~-~l~~~--~~~~~-~~~~~~~~~~~~~ 232 (555)
T 3tbk_A 159 ESRDPLPQVVGLTASVGVGDAKTAEEAMQHICKLCAA-LDAS-VIATVRDNVA-ELEQV--VYKPQ-KISRKVASRTSNT 232 (555)
T ss_dssp SCCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHH-TTCS-EEECCCSCHH-HHHTT--CCCCC-EEEEECCCCSCCH
T ss_pred cccCCCCeEEEEecCcccCccccHHHHHHHHHHHHHh-cCCe-eeeccccCHH-HHHhh--cCCCc-eEEEEecCcccCh
Confidence 12467999999999542 1122111 1111 1111110000 00000 00000 000000
Q ss_pred --------------------------------------------------------------------------------
Q psy15524 633 -------------------------------------------------------------------------------- 632 (930)
Q Consensus 633 -------------------------------------------------------------------------------- 632 (930)
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 312 (555)
T 3tbk_A 233 FKCIISQLMKETEKLAKDVSEELGKLFQIQNREFGTQKYEQWIVGVHKACSVFQMADKEEESRVCKALFLYTSHLRKYND 312 (555)
T ss_dssp HHHHHHHHHHHHHHHHHTSCHHHHGGGGCCSCCSSSHHHHHHHHHHHHHHHTCCCSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccchhhhHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHHHHHHHH
Confidence
Q ss_pred -------------------------------------------------------CchhhHHHHHHHHHhhccCCCcCCC
Q psy15524 633 -------------------------------------------------------PPKLRLVALASFILGKCQNVNEDEE 657 (930)
Q Consensus 633 -------------------------------------------------------~~~~~~~~l~~~l~~~~~~~~~~~~ 657 (930)
....|...+...+...... ...
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~---~~~ 389 (555)
T 3tbk_A 313 ALIISEDAQMTDALNYLKAFFHDVREAAFDETERELTRRFEEKLEELEKVSRDPSNENPKLRDLYLVLQEEYHL---KPE 389 (555)
T ss_dssp HHHHHHHSCHHHHHHHHHHHHHHHCC-----HHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHHH---CTT
T ss_pred HHhhhhhhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhhhhhhhhhhccCCCcCCHHHHHHHHHHHHHhcc---CCC
Confidence 0123444455555433221 126
Q ss_pred ceEEEEecchhhHHHHHHHHhhhcC---------CCceEEEecCCCCHHHHHHHHHHhhc-CCCcEEEeccccccccCCC
Q psy15524 658 SKMLVFMATQDMADYHTELLSTVLG---------ENIAFFKLHGSMSQSERTEVFKTFRS-VKSGVLICTDVAARGLDLP 727 (930)
Q Consensus 658 ~k~iVF~~s~~~~~~~~~~l~~~~~---------~~~~~~~lhg~~~~~~R~~v~~~F~~-~~~~vLv~T~~~~~GlDip 727 (930)
.++||||++++.++.+++.|..... .|.....+||+|++.+|..++++|++ |+.+|||||+++++|+|+|
T Consensus 390 ~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GlDlp 469 (555)
T 3tbk_A 390 TKTILFVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGDNNILIATSVADEGIDIA 469 (555)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHCGGGTTCCEEECCC--------------------------CCSEEEECCCTTCCEETT
T ss_pred ceEEEEeCcHHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHhcCCCeeEEEEcchhhcCCccc
Confidence 8999999999999999999987420 13445556789999999999999999 9999999999999999999
Q ss_pred CccEEEEecCCCChhhHHhhhcccccCCCCceEEEEeCcccHHHHHHH
Q psy15524 728 LVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPSEVKLVEEL 775 (930)
Q Consensus 728 ~v~~VI~~~~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~e~~~~~~l 775 (930)
++++||+||+|.++..|+||+|| ||. +.|.+++|+.+.+......+
T Consensus 470 ~v~~VI~~d~p~s~~~~~Qr~GR-gR~-~~g~~~~l~~~~~~~~~~~~ 515 (555)
T 3tbk_A 470 ECNLVILYEYVGNVIKMIQTRGR-GRA-RDSKCFLLTSSADVIEKEKA 515 (555)
T ss_dssp SCSEEEEESCCSSCCCEECSSCC-CTT-TSCEEEEEESCHHHHHHHHH
T ss_pred cCCEEEEeCCCCCHHHHHHhcCc-CcC-CCceEEEEEcCCCHHHHHHH
Confidence 99999999999999999999999 998 89999999998877655444
|
| >2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-40 Score=407.97 Aligned_cols=335 Identities=18% Similarity=0.202 Sum_probs=254.4
Q ss_pred cCCCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHHHH
Q psy15524 409 GMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTK 488 (930)
Q Consensus 409 ~~~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~ 488 (930)
.++|. |+|+|.++++.+..|++++++||||||||++|.+|++..+.. +.++||++||++|+.|+++.+.+
T Consensus 82 ~~~f~-L~~~Q~eai~~l~~g~~vLV~apTGSGKTlva~lai~~~l~~---------g~rvL~l~PtkaLa~Q~~~~l~~ 151 (1010)
T 2xgj_A 82 TYPFT-LDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKN---------KQRVIYTSPIKALSNQKYRELLA 151 (1010)
T ss_dssp CCSSC-CCHHHHHHHHHHHHTCEEEEECCTTSCHHHHHHHHHHHHHHT---------TCEEEEEESSHHHHHHHHHHHHH
T ss_pred hCCCC-CCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHhcc---------CCeEEEECChHHHHHHHHHHHHH
Confidence 56775 999999999999999999999999999999999999987743 67899999999999999999999
Q ss_pred hhccCCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhccCCcccccceEEEEecchhhhhcCcHHHHHHHHH
Q psy15524 489 LCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLE 568 (930)
Q Consensus 489 ~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~l~~~g~~~~l~~i~~ 568 (930)
.+. .++.++|+.... .+++|+|+|||+|.+++.+ ....++++++|||||||++.+++++..+..++.
T Consensus 152 ~~~-----~vglltGd~~~~-------~~~~IvV~Tpe~L~~~L~~-~~~~l~~l~lVViDEaH~l~d~~rg~~~e~il~ 218 (1010)
T 2xgj_A 152 EFG-----DVGLMTGDITIN-------PDAGCLVMTTEILRSMLYR-GSEVMREVAWVIFDEVHYMRDKERGVVWEETII 218 (1010)
T ss_dssp HHS-----CEEEECSSCEEC-------TTCSEEEEEHHHHHHHHHH-TCTTGGGEEEEEEETGGGGGCTTTHHHHHHHHH
T ss_pred HhC-----CEEEEeCCCccC-------CCCCEEEEcHHHHHHHHHc-CcchhhcCCEEEEechhhhcccchhHHHHHHHH
Confidence 875 356778876543 3589999999999988876 345678999999999999999999988888887
Q ss_pred HHhhcCccceEEEEccccCHHH--HHHHhhhcCCCEEEEccCCCCcccCccceecCCCceEEEEEcCc------------
Q psy15524 569 ILKKQKPQFQSILLSATLTPAV--QRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPP------------ 634 (930)
Q Consensus 569 ~l~~~~~~~q~vl~SAT~~~~~--~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 634 (930)
.++ +..|++++|||+++.. ..+.......+..+........ .......+......+..+..
T Consensus 219 ~l~---~~~~il~LSATi~n~~e~a~~l~~~~~~~~~vi~~~~rp~--pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (1010)
T 2xgj_A 219 LLP---DKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFRPT--PLQHYLFPAHGDGIYLVVDEKSTFREENFQKA 293 (1010)
T ss_dssp HSC---TTCEEEEEECCCTTHHHHHHHHHHHHTSCEEEEEECCCSS--CEEEEEEETTSSCCEEEECTTCCBCHHHHHHH
T ss_pred hcC---CCCeEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCCCcc--cceEEEEecCCcceeeeeccccccchHHHHHH
Confidence 775 4789999999998753 3454444455554433221110 00000010000000001110
Q ss_pred ----------------------------------hhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhh
Q psy15524 635 ----------------------------------KLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTV 680 (930)
Q Consensus 635 ----------------------------------~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~ 680 (930)
......+...+... ...++||||+++..++.++..|...
T Consensus 294 ~~~l~~~~~~~~~~~~~~g~~~~~~k~~~~~~~~~~~l~~l~~~l~~~-------~~~~~IVF~~sr~~~e~la~~L~~~ 366 (1010)
T 2xgj_A 294 MASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKK-------KYNPVIVFSFSKRDCEELALKMSKL 366 (1010)
T ss_dssp HHTCC------------------------------CHHHHHHHHHHHH-------TCCSEEEEESSHHHHHHHHHTTTTS
T ss_pred HHHHhhhhcccccccccccccccccccccccccchHHHHHHHHHHHhc-------CCCCEEEEECCHHHHHHHHHHHHhC
Confidence 11112222222211 1458999999999999998888652
Q ss_pred cCC------------------------------------CceEEEecCCCCHHHHHHHHHHhhcCCCcEEEecccccccc
Q psy15524 681 LGE------------------------------------NIAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGL 724 (930)
Q Consensus 681 ~~~------------------------------------~~~~~~lhg~~~~~~R~~v~~~F~~~~~~vLv~T~~~~~Gl 724 (930)
... ...+..+||+|++.+|..+++.|++|..+|||||+++++|+
T Consensus 367 ~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gI~~~Hggl~~~eR~~ve~~F~~G~ikVLVAT~~la~GI 446 (1010)
T 2xgj_A 367 DFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGL 446 (1010)
T ss_dssp CCCCHHHHHHHHHHHHHHHTTSCGGGTTCHHHHHHHHHHHHTEEEESTTSCHHHHHHHHHHHHTTCCSEEEEEGGGGGST
T ss_pred CCCChHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHHhCCeeEECCCCCHHHHHHHHHHHhcCCCcEEEEehHhhccC
Confidence 100 01266789999999999999999999999999999999999
Q ss_pred CCCCccEEEE----ecC----CCChhhHHhhhcccccCCC--CceEEEEeCcc-cHHHHHHHHhc
Q psy15524 725 DLPLVDWIVQ----YTA----PSSSTDYVHRVGRTARVGH--EGSSLLFLIPS-EVKLVEELQNR 778 (930)
Q Consensus 725 Dip~v~~VI~----~~~----p~s~~~y~qr~GRagR~g~--~g~~~~~~~~~-e~~~~~~l~~~ 778 (930)
|+|++++||+ ||. |.++.+|+||+|||||.|. .|.+++++.+. +...+..+...
T Consensus 447 DiP~~~vVI~~~~kfd~~~~rp~s~~~y~Qr~GRAGR~G~d~~G~vi~l~~~~~e~~~~~~l~~~ 511 (1010)
T 2xgj_A 447 NMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGMVKG 511 (1010)
T ss_dssp TCCBSEEEESCSEEECSSCEEECCHHHHHHHHTTBCCTTTCSSEEEEEEECSCCCHHHHHHHHSC
T ss_pred CCCCceEEEeCCcccCCcCCccCCHHHHhHhhhhcccCCCCCceEEEEEECCCCCHHHHHHHHhC
Confidence 9999999999 998 8899999999999999997 49999999876 66667776544
|
| >4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-40 Score=408.29 Aligned_cols=346 Identities=16% Similarity=0.203 Sum_probs=208.1
Q ss_pred cCCCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHHHH
Q psy15524 409 GMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTK 488 (930)
Q Consensus 409 ~~~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~ 488 (930)
.+|+..|+|+|.++|+.++.|+|+++++|||||||++|++|+++.+.... ...+.++|||+||++|+.|+++.+++
T Consensus 243 ~~g~~~l~~~Q~~~i~~~l~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~----~~~~~~~Lvl~Pt~~L~~Q~~~~~~~ 318 (797)
T 4a2q_A 243 VYETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMP----AGRKAKVVFLATKVPVYEQQKNVFKH 318 (797)
T ss_dssp -----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCC----SSCCCCEEEECSSHHHHHHHHHHHHH
T ss_pred hcCCCCCCHHHHHHHHHHHhCCCEEEEeCCCChHHHHHHHHHHHHHHhcc----ccCCCeEEEEeCCHHHHHHHHHHHHH
Confidence 46899999999999999999999999999999999999999999887631 12377899999999999999999999
Q ss_pred hhccCCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhccCCcccccceEEEEecchhhhhcCcHHH-HHHHH
Q psy15524 489 LCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERD-IAEFL 567 (930)
Q Consensus 489 ~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~l~~~g~~~~-l~~i~ 567 (930)
++...+ ..+..++|+.........+..+++|+|+||++|.+++.......+.++++||+||||++.+.+.... +..++
T Consensus 319 ~~~~~~-~~v~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEaH~~~~~~~~~~i~~~~~ 397 (797)
T 4a2q_A 319 HFERQG-YSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYL 397 (797)
T ss_dssp HHGGGT-CCEEEECCC-----CHHHHHHTCSEEEECHHHHHHHHHSSSCCCGGGCSEEEETTGGGCSTTSHHHHHHHHHH
T ss_pred hcccCC-ceEEEEeCCcchhhhHHHhhCCCCEEEEchHHHHHHHHhccccccccCCEEEEECccccCCCccHHHHHHHHH
Confidence 987543 4567788887666666667778999999999999998764333688999999999999987663222 22222
Q ss_pred HH-HhhcCccceEEEEccccCH-----------HHHHHHhhhcCCCEEEEccCCCCcccCccceecCCCceEEEEEc---
Q psy15524 568 EI-LKKQKPQFQSILLSATLTP-----------AVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVT--- 632 (930)
Q Consensus 568 ~~-l~~~~~~~q~vl~SAT~~~-----------~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 632 (930)
.. +....+..|++++|||++. .+..+.... . +..+........ ........|. ..+..+
T Consensus 398 ~~~~~~~~~~~~~l~lSATp~~~~~~~~~~~~~~i~~l~~~L-~-~~~i~~~~~~~~-~l~~~~~~~~---~~~~~~~~~ 471 (797)
T 4a2q_A 398 EQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYL-D-IQAISTVRENIQ-ELQRFMNKPE---IDVRLVKRR 471 (797)
T ss_dssp HHHHTTCCCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHH-T-CSEEECCCTTHH-HHHHHSCCCC---CEEEECCCC
T ss_pred HHhhccCCCCCeEEEEcCCccccccccHHHHHHHHHHHHHhc-C-CcEEecccccHH-HHHHhcCCCc---eEEEecCCC
Confidence 21 1122456899999999952 222222211 1 111111000000 0000000000 000000
Q ss_pred --------------------------------------------------------------------------------
Q psy15524 633 -------------------------------------------------------------------------------- 632 (930)
Q Consensus 633 -------------------------------------------------------------------------------- 632 (930)
T Consensus 472 ~~~~~~~~~~~l~~~i~~~~~~~~~l~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~ 551 (797)
T 4a2q_A 472 IHNPFAAIISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRK 551 (797)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHhhHHhhhhccccccchhHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHH
Confidence
Q ss_pred ----------------------------------------------------------CchhhHHHHHHHHHhhccCCCc
Q psy15524 633 ----------------------------------------------------------PPKLRLVALASFILGKCQNVNE 654 (930)
Q Consensus 633 ----------------------------------------------------------~~~~~~~~l~~~l~~~~~~~~~ 654 (930)
....|...+...+......
T Consensus 552 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~--- 628 (797)
T 4a2q_A 552 YNDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRY--- 628 (797)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHH---
T ss_pred HHHHHhhhccccHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHhcc---
Confidence 0122344444444432211
Q ss_pred CCCceEEEEecchhhHHHHHHHHhhhc---------CCCceEEEecCCCCHHHHHHHHHHhhc-CCCcEEEecccccccc
Q psy15524 655 DEESKMLVFMATQDMADYHTELLSTVL---------GENIAFFKLHGSMSQSERTEVFKTFRS-VKSGVLICTDVAARGL 724 (930)
Q Consensus 655 ~~~~k~iVF~~s~~~~~~~~~~l~~~~---------~~~~~~~~lhg~~~~~~R~~v~~~F~~-~~~~vLv~T~~~~~Gl 724 (930)
..+.++||||++++.++.+++.|.... -.|.....+||+|++.+|..++++|++ |+.+|||||+++++||
T Consensus 629 ~~~~kvLIF~~~~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~g~~~vLVaT~~~~~GI 708 (797)
T 4a2q_A 629 NPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGI 708 (797)
T ss_dssp CSSCCEEEEESSHHHHHHHHHHHHTCSTTCSCCCEEC----------------------------CCSEEEEECC-----
T ss_pred CCCCeEEEEECcHHHHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhhccCCceEEEEcCchhcCC
Confidence 236899999999999999999997631 024556677999999999999999999 9999999999999999
Q ss_pred CCCCccEEEEecCCCChhhHHhhhcccccCCCCceEEEEeCcccHH
Q psy15524 725 DLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPSEVK 770 (930)
Q Consensus 725 Dip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~e~~ 770 (930)
|+|+|++||+||+|.++..|+||+|| ||. ++|.+++|+++.+..
T Consensus 709 Dlp~v~~VI~yd~p~s~~~~iQr~GR-GR~-~~g~~i~l~~~~~~e 752 (797)
T 4a2q_A 709 DIVQCNLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEVV 752 (797)
T ss_dssp --CCCSEEEEESCCSCHHHHHTC---------CCCEEEEECCHHHH
T ss_pred CchhCCEEEEeCCCCCHHHHHHhcCC-CCC-CCceEEEEEeCCcHH
Confidence 99999999999999999999999999 998 899999999987654
|
| >1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-41 Score=422.82 Aligned_cols=327 Identities=18% Similarity=0.268 Sum_probs=251.2
Q ss_pred HHHHHHhcCCCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHH
Q psy15524 402 MKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQ 481 (930)
Q Consensus 402 ~~~~l~~~~~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q 481 (930)
..+.+.+.+||. | |+|.++||.++.|+|++++||||||||+ |.+|++..+.. .+.++|||+||++||.|
T Consensus 46 ~~~~~~~~~g~~-p-~iQ~~ai~~il~g~dvlv~apTGSGKTl-~~lp~l~~~~~--------~~~~~lil~PtreLa~Q 114 (1054)
T 1gku_B 46 FVEFFRKCVGEP-R-AIQKMWAKRILRKESFAATAPTGVGKTS-FGLAMSLFLAL--------KGKRCYVIFPTSLLVIQ 114 (1054)
T ss_dssp HHHHHHTTTCSC-C-HHHHHHHHHHHTTCCEECCCCBTSCSHH-HHHHHHHHHHT--------TSCCEEEEESCHHHHHH
T ss_pred HHHHHHHhcCCC-H-HHHHHHHHHHHhCCCEEEEcCCCCCHHH-HHHHHHHHHhh--------cCCeEEEEeccHHHHHH
Confidence 345666679999 9 9999999999999999999999999998 99999988764 36789999999999999
Q ss_pred HHHHHHHhhccCCC---cceEEEeCCCchHHH---HHHHhcCCcEEEECchhHHHhhhccCCcccccceEEEEecchhhh
Q psy15524 482 TLEIFTKLCKSFTW---IVPSWLTGGEKMKSE---KARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRIL 555 (930)
Q Consensus 482 ~~~~~~~~~~~~~~---~~~~~~~gg~~~~~~---~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~l~ 555 (930)
+++.+++++...+. ..++.++||...... ...+.. ++|+|+|||+|.+++.+ +++++++|+||||+++
T Consensus 115 ~~~~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~-~~IlV~TP~~L~~~l~~-----L~~l~~lViDEah~~l 188 (1054)
T 1gku_B 115 AAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN-FKIVITTTQFLSKHYRE-----LGHFDFIFVDDVDAIL 188 (1054)
T ss_dssp HHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG-CSEEEEEHHHHHHCSTT-----SCCCSEEEESCHHHHH
T ss_pred HHHHHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC-CCEEEEcHHHHHHHHHH-----hccCCEEEEeChhhhh
Confidence 99999999876543 156778888876553 333444 99999999999998865 5689999999999999
Q ss_pred hcCcHHHHHHHHHHHhh--------cCccceEEEEccccCHHHHHHHhhhcCCCEEEEccCCCCcccCccceecCCCceE
Q psy15524 556 DQGYERDIAEFLEILKK--------QKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQ 627 (930)
Q Consensus 556 ~~g~~~~l~~i~~~l~~--------~~~~~q~vl~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 627 (930)
+ |+..+..++..+.- .....|++++|||+++. ..+....+.++..+.+... ......+.+
T Consensus 189 ~--~~~~~~~i~~~lgf~~~~~~~~~~~~~q~~l~SAT~t~~-~~~~~~~~~~~~~i~v~~~---------~~~~~~i~~ 256 (1054)
T 1gku_B 189 K--ASKNVDKLLHLLGFHYDLKTKSWVGEARGCLMVSTATAK-KGKKAELFRQLLNFDIGSS---------RITVRNVED 256 (1054)
T ss_dssp T--STHHHHHHHHHTTEEEETTTTEEEECCSSEEEECCCCSC-CCTTHHHHHHHHCCCCSCC---------EECCCCEEE
T ss_pred h--ccccHHHHHHHhCcchhhhhhhcccCCceEEEEecCCCc-hhHHHHHhhcceEEEccCc---------ccCcCCceE
Confidence 8 45677777777641 12367899999999876 4333222222222221111 112234555
Q ss_pred EEEEcCchhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHHHHHHHHHHhh
Q psy15524 628 HFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFR 707 (930)
Q Consensus 628 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~v~~~F~ 707 (930)
.+. ...+...+..++... +.++||||++++.++.+++.|... +.+..+||+| ..+++.|+
T Consensus 257 ~~~---~~~k~~~L~~ll~~~--------~~~~LVF~~t~~~a~~l~~~L~~~----~~v~~lhg~~-----~~~l~~F~ 316 (1054)
T 1gku_B 257 VAV---NDESISTLSSILEKL--------GTGGIIYARTGEEAEEIYESLKNK----FRIGIVTATK-----KGDYEKFV 316 (1054)
T ss_dssp EEE---SCCCTTTTHHHHTTS--------CSCEEEEESSHHHHHHHHHTTTTS----SCEEECTTSS-----SHHHHHHH
T ss_pred EEe---chhHHHHHHHHHhhc--------CCCEEEEEcCHHHHHHHHHHHhhc----cCeeEEeccH-----HHHHHHHH
Confidence 554 244445555555432 568999999999999999998864 6788899998 37889999
Q ss_pred cCCCcEEEe----ccccccccCCCCc-cEEEEecCC--------------------------------------------
Q psy15524 708 SVKSGVLIC----TDVAARGLDLPLV-DWIVQYTAP-------------------------------------------- 738 (930)
Q Consensus 708 ~~~~~vLv~----T~~~~~GlDip~v-~~VI~~~~p-------------------------------------------- 738 (930)
+|+.+|||| |++++||+|+|+| ++||++|+|
T Consensus 317 ~G~~~VLVaTas~Tdv~~rGIDip~VI~~VI~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (1054)
T 1gku_B 317 EGEIDHLIGTAHYYGTLVRGLDLPERIRFAVFVGCPSFRVTIEDIDSLSPQMVKLLAYLYRNVDEIERLLPAVERHIDEV 396 (1054)
T ss_dssp HTSCSEEEEECC------CCSCCTTTCCEEEEESCCEEEEECSCGGGSCHHHHHHHHTTTSCHHHHHTTCTTTSSCHHHH
T ss_pred cCCCcEEEEecCCCCeeEeccccCCcccEEEEeCCCcccccccccccChHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 999999999 9999999999996 999999999
Q ss_pred ---------------------------CChhhHHhhhcccccCCCCc--eEEEEeCcccHHHHHHHHh
Q psy15524 739 ---------------------------SSSTDYVHRVGRTARVGHEG--SSLLFLIPSEVKLVEELQN 777 (930)
Q Consensus 739 ---------------------------~s~~~y~qr~GRagR~g~~g--~~~~~~~~~e~~~~~~l~~ 777 (930)
.|..+|+||+|||||.|..| .+++|+..++..+++.+.+
T Consensus 397 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~yiQr~GRagR~g~~g~~~g~~~~~~~d~~~~~~l~~ 464 (1054)
T 1gku_B 397 REILKKVMGKERPQAKDVVVREGEVIFPDLRTYIQGSGRTSRLFAGGLTKGASFLLEDDSELLSAFIE 464 (1054)
T ss_dssp HHHHHHHHTTSCCSCSSSEEETTEEEEECHHHHHHHHHTTCCEETTEECCEEEEEECSCHHHHHHHHH
T ss_pred HHHHHHHhccccccccceeEeecceecCcHHHHhhhhchhhhccCCCCceEEEEEEecCHHHHHHHHH
Confidence 78999999999999988776 4888888888877766654
|
| >2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-41 Score=407.19 Aligned_cols=357 Identities=17% Similarity=0.230 Sum_probs=219.2
Q ss_pred cCCCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHHHH
Q psy15524 409 GMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTK 488 (930)
Q Consensus 409 ~~~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~ 488 (930)
.+||..|+|+|.++++.++.|+|+++++|||+|||++|++|+++.+.... ...+.++|||+||++|+.|+.+.+.+
T Consensus 8 ~~g~~~lr~~Q~~~i~~~l~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~----~~~~~~~lvl~Pt~~L~~Q~~~~~~~ 83 (696)
T 2ykg_A 8 LYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFP----QGQKGKVVFFANQIPVYEQNKSVFSK 83 (696)
T ss_dssp TTC--CCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSC----TTCCCCEEEECSSHHHHHHHHHHHHH
T ss_pred ccCCCCccHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHHHHhCc----cCCCCeEEEEECCHHHHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999887521 12346899999999999999999999
Q ss_pred hhccCCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhccCCcccccceEEEEecchhhhhcCcH-HHHHHHH
Q psy15524 489 LCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYE-RDIAEFL 567 (930)
Q Consensus 489 ~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~l~~~g~~-~~l~~i~ 567 (930)
++...+ ..+..++||.........+..+++|+|+|||+|.+++.......+.++++|||||||++.+.... ..+..++
T Consensus 84 ~~~~~~-~~v~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~L~~~l~~~~~~~l~~~~~vViDEaH~~~~~~~~~~i~~~~l 162 (696)
T 2ykg_A 84 YFERHG-YRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYL 162 (696)
T ss_dssp HTTTTT-CCEEEECSSSCSSSCHHHHHHTCSEEEECHHHHHHHHHTTSSCCGGGCSEEEEETGGGCSTTCHHHHHHHHHH
T ss_pred HhccCC-ceEEEEeCCccccccHHHhccCCCEEEECHHHHHHHHhcCcccccccccEEEEeCCCcccCcccHHHHHHHHH
Confidence 986433 45677788876655556666789999999999999987643336889999999999998865422 2222222
Q ss_pred HH-Hh-hcCccceEEEEccccC--------HHHHHHHhhh---------------------cCCCEEEEccCCCCcccCc
Q psy15524 568 EI-LK-KQKPQFQSILLSATLT--------PAVQRLAGMT---------------------LQNPIQIDAADSTDIHNTT 616 (930)
Q Consensus 568 ~~-l~-~~~~~~q~vl~SAT~~--------~~~~~l~~~~---------------------~~~~~~i~~~~~~~~~~~~ 616 (930)
.. +. ...+..+++++|||+. +....+.... ...|...............
T Consensus 163 ~~~~~~~~~~~~~il~LTATp~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~f 242 (696)
T 2ykg_A 163 DQKLGGSSGPLPQVIGLTASVGVGDAKTTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKF 242 (696)
T ss_dssp HHHHTTCCSCCCEEEEEESCCCCSSCCSHHHHHHHHHHHHHHTTCCEEECCCTTHHHHHHHSCCCEEEEEECCCCSCCHH
T ss_pred HHhhcccCCCCCeEEEEeCccccCccccHHHHHHHHHHHHHhcCCceEeecccchHHHHhhcCCCceeEEecCcccCChH
Confidence 21 11 1134689999999997 1222222211 1112111000000000000
Q ss_pred -------------------c---ce---------------------------ecC-------------------------
Q psy15524 617 -------------------D---SL---------------------------VIP------------------------- 622 (930)
Q Consensus 617 -------------------~---~~---------------------------~~~------------------------- 622 (930)
. .. ..+
T Consensus 243 s~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~ 322 (696)
T 2ykg_A 243 KYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDA 322 (696)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTGGGSSSCCSCCSSSHHHHHHHHHHHHTSCC------CCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhHH
Confidence 0 00 000
Q ss_pred ----------------------------CCceEEEEE-------------c---CchhhHHHHHHHHHhhccCCCcCCCc
Q psy15524 623 ----------------------------DSLKQHFIV-------------T---PPKLRLVALASFILGKCQNVNEDEES 658 (930)
Q Consensus 623 ----------------------------~~~~~~~~~-------------~---~~~~~~~~l~~~l~~~~~~~~~~~~~ 658 (930)
..+.+.+.. . ....+...+..++...... ..+.
T Consensus 323 ~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~ll~~~~~~---~~~~ 399 (696)
T 2ykg_A 323 LIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHL---NPET 399 (696)
T ss_dssp HHHHHHSCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHTT---CTTC
T ss_pred HhccchhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhcc---CCCC
Confidence 000000000 0 1234555666666544321 1267
Q ss_pred eEEEEecchhhHHHHHHHHhhhcC-CCceEEEe--------cCCCCHHHHHHHHHHhhc-CCCcEEEeccccccccCCCC
Q psy15524 659 KMLVFMATQDMADYHTELLSTVLG-ENIAFFKL--------HGSMSQSERTEVFKTFRS-VKSGVLICTDVAARGLDLPL 728 (930)
Q Consensus 659 k~iVF~~s~~~~~~~~~~l~~~~~-~~~~~~~l--------hg~~~~~~R~~v~~~F~~-~~~~vLv~T~~~~~GlDip~ 728 (930)
++||||++++.++.+++.|..... .++.+..+ ||+|++.+|..++++|++ |+.+|||||+++++|||+|+
T Consensus 400 ~~IIF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g~~~vLVaT~v~~~GiDip~ 479 (696)
T 2ykg_A 400 ITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQ 479 (696)
T ss_dssp CEEEECSCHHHHHHHHHHHHHCTTCCSCCEEC-----------------------------CCSCSEEEESSCCC---CC
T ss_pred cEEEEeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHHHHhcCCccEEEEechhhcCCcCcc
Confidence 999999999999999999987510 11566666 569999999999999998 99999999999999999999
Q ss_pred ccEEEEecCCCChhhHHhhhcccccCCCCceEEEEeCcccHHHHHHH
Q psy15524 729 VDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPSEVKLVEEL 775 (930)
Q Consensus 729 v~~VI~~~~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~e~~~~~~l 775 (930)
+++||+||+|.++..|+||+|| ||. +.|.+++++.+.+....+.+
T Consensus 480 v~~VI~~d~p~s~~~~~Qr~GR-GR~-~~g~~~~l~~~~~~~~~~~~ 524 (696)
T 2ykg_A 480 CNLVILYEYVGNVIKMIQTRGR-GRA-RGSKCFLLTSNAGVIEKEQI 524 (696)
T ss_dssp CSEEEEESCC--CCCC-----------CCCEEEEEESCHHHHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHhhcc-CcC-CCceEEEEecCCCHHHHHHH
Confidence 9999999999999999999999 998 78999999988776544443
|
| >2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-41 Score=398.26 Aligned_cols=390 Identities=12% Similarity=0.114 Sum_probs=270.9
Q ss_pred CCCHHHHHHHHhcCCCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCH
Q psy15524 397 GIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTR 476 (930)
Q Consensus 397 ~l~~~~~~~l~~~~~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~Ptr 476 (930)
++++.+.+.+.+ ....++|+|+.++|.+++|+|++++||||||||++|++|+++.+.. .+.++||++|||
T Consensus 156 ~~~~~~~~~l~~--~~~~~lpiq~~~i~~l~~g~dvlv~a~TGSGKT~~~~lpil~~l~~--------~~~~vLvl~Ptr 225 (618)
T 2whx_A 156 TKSGDYVSAITQ--AERIGEPDYEVDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALK--------RRLRTLILAPTR 225 (618)
T ss_dssp ------CEECBC--CCCCCCCCCCCCGGGGSTTCEEEECCCTTSSTTTTHHHHHHHHHHH--------TTCCEEEEESSH
T ss_pred cchHHHHHHHhh--ccccCCCccccCHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHHHHh--------CCCeEEEEcChH
Confidence 445544444432 2478899999899999999999999999999999999999998865 367899999999
Q ss_pred HHHHHHHHHHHHhhccCCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhccCCcccccceEEEEecchhhhh
Q psy15524 477 ELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILD 556 (930)
Q Consensus 477 eLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~l~~ 556 (930)
+||.|+++.+... .... .++. .. .....+..+.++|.+.+...+... ..++++++||+||||++ +
T Consensus 226 eLa~Qi~~~l~~~-------~v~~-~~~~-l~---~~~tp~~~i~~~t~~~l~~~l~~~--~~l~~~~~iViDEah~~-~ 290 (618)
T 2whx_A 226 VVAAEMEEALRGL-------PIRY-QTPA-VK---SDHTGREIVDLMCHATFTTRLLSS--TRVPNYNLIVMDEAHFT-D 290 (618)
T ss_dssp HHHHHHHHHTTTS-------CEEE-CCTT-SS---CCCCSSSCEEEEEHHHHHHHHHHC--SSCCCCSEEEEESTTCC-S
T ss_pred HHHHHHHHHhcCC-------ceeE-eccc-ce---eccCCCceEEEEChHHHHHHHhcc--ccccCCeEEEEECCCCC-C
Confidence 9999999887521 1121 1111 00 000123456677777776655542 34789999999999998 7
Q ss_pred cCcHHHHHHHHHHHhhcCccceEEEEccccCHHHHHHHhhhcCCCEEEEccCCCCcccCccceecCCCceEEEEEcCchh
Q psy15524 557 QGYERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKL 636 (930)
Q Consensus 557 ~g~~~~l~~i~~~l~~~~~~~q~vl~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 636 (930)
.+|...+..+...++. +++|+++||||+++.+..++. .++..+.+... .|. .
T Consensus 291 ~~~~~~~~~i~~~l~~--~~~q~il~SAT~~~~~~~~~~---~~~~~~~v~~~-----------~~~------------~ 342 (618)
T 2whx_A 291 PCSVAARGYISTRVEM--GEAAAIFMTATPPGSTDPFPQ---SNSPIEDIERE-----------IPE------------R 342 (618)
T ss_dssp HHHHHHHHHHHHHHHH--TSCEEEEECSSCTTCCCSSCC---CSSCEEEEECC-----------CCS------------S
T ss_pred ccHHHHHHHHHHHhcc--cCccEEEEECCCchhhhhhhc---cCCceeeeccc-----------CCH------------H
Confidence 7888888888888753 478999999999875443222 22322222111 000 0
Q ss_pred hHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHHHHHHHHHHhhcCCCcEEEe
Q psy15524 637 RLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSVKSGVLIC 716 (930)
Q Consensus 637 ~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~v~~~F~~~~~~vLv~ 716 (930)
+...+...+... .+++||||+|++.++.+++.|.+. ++.+..+||+ +|.++++.|++|+.+||||
T Consensus 343 ~~~~ll~~l~~~--------~~~~LVF~~s~~~a~~l~~~L~~~---g~~v~~lhg~----~R~~~l~~F~~g~~~VLVa 407 (618)
T 2whx_A 343 SWNTGFDWITDY--------QGKTVWFVPSIKAGNDIANCLRKS---GKRVIQLSRK----TFDTEYPKTKLTDWDFVVT 407 (618)
T ss_dssp CCSSSCHHHHHC--------CSCEEEECSSHHHHHHHHHHHHHT---TCCEEEECTT----THHHHTTHHHHSCCSEEEE
T ss_pred HHHHHHHHHHhC--------CCCEEEEECChhHHHHHHHHHHHc---CCcEEEEChH----HHHHHHHhhcCCCcEEEEE
Confidence 001112222221 569999999999999999999985 7888899984 6888999999999999999
Q ss_pred ccccccccCCCCccEE--------------------EEecCCCChhhHHhhhcccccCCC-CceEEEEeC---cccHHHH
Q psy15524 717 TDVAARGLDLPLVDWI--------------------VQYTAPSSSTDYVHRVGRTARVGH-EGSSLLFLI---PSEVKLV 772 (930)
Q Consensus 717 T~~~~~GlDip~v~~V--------------------I~~~~p~s~~~y~qr~GRagR~g~-~g~~~~~~~---~~e~~~~ 772 (930)
||++++|+|+| +++| |+++.|.+.++|+||+|||||.|. .|.+++|+. +.|..++
T Consensus 408 Tdv~~rGiDi~-v~~VId~g~~~~P~~~~~~~~~~~i~~d~P~s~~~yiQR~GRaGR~g~~~G~ai~l~~~~~~~d~~~l 486 (618)
T 2whx_A 408 TDISEMGANFR-AGRVIDPRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGDPLKNDEDHA 486 (618)
T ss_dssp CGGGGTTCCCC-CSEEEECCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTCH
T ss_pred CcHHHcCcccC-ceEEEECcceecceecccCCCceEEcccccCCHHHHHHhccccCCCCCCCCeEEEEccCCchhhHHHH
Confidence 99999999998 8888 788889999999999999999965 899999998 7777777
Q ss_pred HHHHhcCCccchhchHHHHHhhhhhhccCccccccccchHHHHHHHHHHHHHHHHhcHHHHHHHhhhhHHHHHHhhhccc
Q psy15524 773 EELQNRRIRIEEIKLKDCLQNLLSVKMEGDLSRLADGNVETAATALQMSFESAVLQQKILHTSACKGYTSWVRFYASYSK 852 (930)
Q Consensus 773 ~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~a~~s~~~~y~~~~~ 852 (930)
+.++.. +.+++..+.. +....... .. +..+ ..+..+..+...+.++|.++++.|. .+
T Consensus 487 ~~le~~-i~l~~~~~~~-----------~~~~~~~~-~~-------~~~~-~~~~~~~~l~~~~~~~f~~ll~~~~-~~- 543 (618)
T 2whx_A 487 HWTEAK-MLLDNIYTPE-----------GIIPTLFG-PE-------REKT-QAIDGEFRLRGEQRKTFVELMRRGD-LP- 543 (618)
T ss_dssp HHHHHH-HHHTTCCCTT-----------CCCCCCCG-GG-------GGGC-CCCTTTTCCCHHHHHHHHHHHHTTC-CC-
T ss_pred HHHHhH-hccccccCCc-----------chhhhccc-hh-------hhcc-ccCCceeEccHHHHHHHHHHhhccC-Cc-
Confidence 776653 2222222111 00000000 00 0000 0012223345667889999998765 22
Q ss_pred ccccccccccCChHHHHHhcCCCCCCc
Q psy15524 853 DLRHIFNFKQIHLGHFAKSFALRDAPS 879 (930)
Q Consensus 853 ~~~~~f~~~~l~~~~~a~sf~l~~~p~ 879 (930)
.+..|++.+++++..+++|++..+|+
T Consensus 544 -~~l~~~v~~~~l~~~~~~w~~~~~~~ 569 (618)
T 2whx_A 544 -VWLSYKVASAGISYKDREWCFTGERN 569 (618)
T ss_dssp -HHHHHHHHHTTCCTTCCGGGTCCCGG
T ss_pred -HHHHHHHHhcCCCccceeEEecCCCc
Confidence 34448888999999999999999997
|
| >4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-39 Score=398.65 Aligned_cols=351 Identities=17% Similarity=0.200 Sum_probs=206.0
Q ss_pred CCCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHHHHh
Q psy15524 410 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKL 489 (930)
Q Consensus 410 ~~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~ 489 (930)
.|+..|+|+|.++++.++.|+|+++.+|||||||++|++|+++.+.... ...+.++|||+||++|+.|+++.++++
T Consensus 244 ~~~~~~r~~Q~~ai~~il~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~----~~~~~~vLvl~Pt~~L~~Q~~~~~~~~ 319 (936)
T 4a2w_A 244 YETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMP----AGRKAKVVFLATKVPVYEQQKNVFKHH 319 (936)
T ss_dssp ----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHTTTTTCC----SSCCCCEEEECSSHHHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHHHHHhcc----ccCCCeEEEEeCCHHHHHHHHHHHHHH
Confidence 4788999999999999999999999999999999999999998775421 123678999999999999999999998
Q ss_pred hccCCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhccCCcccccceEEEEecchhhhhcCcH-HHHHHHHH
Q psy15524 490 CKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYE-RDIAEFLE 568 (930)
Q Consensus 490 ~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~l~~~g~~-~~l~~i~~ 568 (930)
+... .+.+..++|+.........+..+++|+|+||++|.+++.......+.++++||+||||++...+.. ..+..++.
T Consensus 320 ~~~~-~~~v~~~~G~~~~~~~~~~~~~~~~IvI~Tp~~L~~~l~~~~~~~l~~~~liViDEaH~~~~~~~~~~i~~~~~~ 398 (936)
T 4a2w_A 320 FERQ-GYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLE 398 (936)
T ss_dssp HHTT-TCCEEEECCC-----CCHHHHHHCSEEEECHHHHHHHHHSSSCCCGGGCSEEEEETGGGCSTTCHHHHHHHHHHH
T ss_pred hccc-CceEEEEECCcchhhHHHHhccCCCEEEecHHHHHHHHHcCccccccCCCEEEEECccccCCCccHHHHHHHHHH
Confidence 8654 345677888876555555566679999999999999988644336889999999999999876532 22222222
Q ss_pred H-HhhcCccceEEEEccccCH-----------HHHHHHhhh------------------cCCCEEEE-ccCCCCcccCc-
Q psy15524 569 I-LKKQKPQFQSILLSATLTP-----------AVQRLAGMT------------------LQNPIQID-AADSTDIHNTT- 616 (930)
Q Consensus 569 ~-l~~~~~~~q~vl~SAT~~~-----------~~~~l~~~~------------------~~~~~~i~-~~~~~~~~~~~- 616 (930)
. +....+..|++++|||+.. .+..+.... ...|.... ...........
T Consensus 399 ~~~~~~~~~~~~l~LSATp~~~~~~~l~~~~~~i~~L~~~L~~~~i~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~ 478 (936)
T 4a2w_A 399 QKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAA 478 (936)
T ss_dssp HHHTTCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHSCCCCEEEEECCCCSCCHHHH
T ss_pred HhhccCCCcCeEEEecCCcccccchhHHHHHHHHHHHHHhcCCceeecccccHHHHHHhccCCcceEEecccccCcHHHH
Confidence 2 1112456899999999952 222222111 11111110 00000000000
Q ss_pred -------------cceecCCCceEE--EEE--------------------------------------------------
Q psy15524 617 -------------DSLVIPDSLKQH--FIV-------------------------------------------------- 631 (930)
Q Consensus 617 -------------~~~~~~~~~~~~--~~~-------------------------------------------------- 631 (930)
........+.+. ...
T Consensus 479 ~l~~l~~~i~~~~~~~l~~~~l~~~~~~~~g~~~y~~~l~~l~k~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~al~i 558 (936)
T 4a2w_A 479 IISNLMSETEALMRTIAYVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALII 558 (936)
T ss_dssp HHHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhccccccchHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 000000000000 000
Q ss_pred --------------------------------------------------cCchhhHHHHHHHHHhhccCCCcCCCceEE
Q psy15524 632 --------------------------------------------------TPPKLRLVALASFILGKCQNVNEDEESKML 661 (930)
Q Consensus 632 --------------------------------------------------~~~~~~~~~l~~~l~~~~~~~~~~~~~k~i 661 (930)
.....|...+...+..... ...+.++|
T Consensus 559 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~---~~~~~rvL 635 (936)
T 4a2w_A 559 SEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYR---YNPQTRTL 635 (936)
T ss_dssp HHHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHTTT---SCTTCCEE
T ss_pred hcchhHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHhc---cCCCCeEE
Confidence 0012233334444443221 12368999
Q ss_pred EEecchhhHHHHHHHHhhhc---------CCCceEEEecCCCCHHHHHHHHHHhhc-CCCcEEEeccccccccCCCCccE
Q psy15524 662 VFMATQDMADYHTELLSTVL---------GENIAFFKLHGSMSQSERTEVFKTFRS-VKSGVLICTDVAARGLDLPLVDW 731 (930)
Q Consensus 662 VF~~s~~~~~~~~~~l~~~~---------~~~~~~~~lhg~~~~~~R~~v~~~F~~-~~~~vLv~T~~~~~GlDip~v~~ 731 (930)
|||+++++++.+++.|.... -.|.....+||+|++.+|..++++|++ |+.+|||||+++++|||+|+|++
T Consensus 636 IF~~t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g~~~VLVaT~~~~eGIDlp~v~~ 715 (936)
T 4a2w_A 636 LFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNL 715 (936)
T ss_dssp EEESSHHHHHHHHHHHHHCSTTSSCCCEEC----------------------------CCSEEEEECC------CCCCSE
T ss_pred EEeCCHHHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhhccCCeeEEEEeCchhcCCcchhCCE
Confidence 99999999999999998741 014455667999999999999999999 99999999999999999999999
Q ss_pred EEEecCCCChhhHHhhhcccccCCCCceEEEEeCcccHH
Q psy15524 732 IVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPSEVK 770 (930)
Q Consensus 732 VI~~~~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~e~~ 770 (930)
||+||+|.++..|+||+|| ||. +.|.+++++.+.+..
T Consensus 716 VI~yD~p~s~~~~iQr~GR-GR~-~~g~vi~Li~~~t~e 752 (936)
T 4a2w_A 716 VVLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEVV 752 (936)
T ss_dssp EEEESCCSCSHHHHCC---------CCCEEEEESCHHHH
T ss_pred EEEeCCCCCHHHHHHhcCC-CCC-CCCEEEEEEeCCCHH
Confidence 9999999999999999999 998 789999999876553
|
| >1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-39 Score=387.86 Aligned_cols=330 Identities=21% Similarity=0.308 Sum_probs=240.1
Q ss_pred HHHHHHHhcCCCCCCCHHHHHhHHhhhcC------CcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEcc
Q psy15524 401 FMKKNLNEGMNITQVTTVQQLSIQPILDG------GDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILP 474 (930)
Q Consensus 401 ~~~~~l~~~~~~~~~~~iQ~~~i~~il~~------~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~P 474 (930)
.+.+.+.+.++| .||++|.++++.++.+ .|++++||||||||++|++|++..+.. |.+++|++|
T Consensus 356 ~~~~~~~~~lpf-~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~~---------g~qvlvlaP 425 (780)
T 1gm5_A 356 KLAEEFIKSLPF-KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEA---------GFQTAFMVP 425 (780)
T ss_dssp HHHHHHHHHSSS-CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHH---------TSCEEEECS
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHc---------CCeEEEEeC
Confidence 345555557899 9999999999999875 589999999999999999999998764 678999999
Q ss_pred CHHHHHHHHHHHHHhhccCCCcceEEEeCCCchHHH---HHHHhcC-CcEEEECchhHHHhhhccCCcccccceEEEEec
Q psy15524 475 TRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSE---KARIRKG-ISILVATPGRLLDHCKHTETLKFSKVEHLVLDE 550 (930)
Q Consensus 475 treLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~---~~~~~~~-~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlDE 550 (930)
|++||.|+++.+.+++...+ +.+..++|+...... ...+..+ ++|+|+||+.+.+ ...+.+++++|+||
T Consensus 426 tr~La~Q~~~~l~~~~~~~g-i~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~------~~~~~~l~lVVIDE 498 (780)
T 1gm5_A 426 TSILAIQHYRRTVESFSKFN-IHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQE------DVHFKNLGLVIIDE 498 (780)
T ss_dssp CHHHHHHHHHHHHHHHTCSS-CCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHH------CCCCSCCCEEEEES
T ss_pred cHHHHHHHHHHHHHHhhhcC-ceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhh------hhhccCCceEEecc
Confidence 99999999999999987554 456778888765442 3334444 9999999998854 24578899999999
Q ss_pred chhhhhcCcHHHHHHHHHHHhhcCccceEEEEccccCHHHHHHHhhhcCCCEEEEccCCCCcccCccceecCCCceEEEE
Q psy15524 551 ADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFI 630 (930)
Q Consensus 551 ah~l~~~g~~~~l~~i~~~l~~~~~~~q~vl~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 630 (930)
+|++.... ...+.......++++||||+.+....+......+...+...... ...+..
T Consensus 499 aHr~g~~q--------r~~l~~~~~~~~vL~mSATp~p~tl~~~~~g~~~~s~i~~~p~~-----------r~~i~~--- 556 (780)
T 1gm5_A 499 QHRFGVKQ--------REALMNKGKMVDTLVMSATPIPRSMALAFYGDLDVTVIDEMPPG-----------RKEVQT--- 556 (780)
T ss_dssp CCCC-------------CCCCSSSSCCCEEEEESSCCCHHHHHHHTCCSSCEEECCCCSS-----------CCCCEE---
T ss_pred cchhhHHH--------HHHHHHhCCCCCEEEEeCCCCHHHHHHHHhCCcceeeeeccCCC-----------CcceEE---
Confidence 99863221 11122233468999999998775544333221122222111000 011111
Q ss_pred EcCchhhHHHHHHHHHhhccCCCcCCCceEEEEecchh--------hHHHHHHHHhh-hcCCCceEEEecCCCCHHHHHH
Q psy15524 631 VTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQD--------MADYHTELLST-VLGENIAFFKLHGSMSQSERTE 701 (930)
Q Consensus 631 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~--------~~~~~~~~l~~-~~~~~~~~~~lhg~~~~~~R~~ 701 (930)
......+...+...+..... .+.+++|||++++ .++.+++.|.+ .+ .++.+..+||+|++.+|..
T Consensus 557 ~~~~~~~~~~l~~~i~~~l~-----~g~qvlVf~~~ie~se~l~~~~a~~l~~~L~~~~~-~~~~v~~lHG~m~~~eR~~ 630 (780)
T 1gm5_A 557 MLVPMDRVNEVYEFVRQEVM-----RGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVF-PEFKLGLMHGRLSQEEKDR 630 (780)
T ss_dssp CCCCSSTHHHHHHHHHHHTT-----TSCCBCCBCCCC--------CHHHHHHHSGGGSCC----CBCCCCSSSCCSCSHH
T ss_pred EEeccchHHHHHHHHHHHHh-----cCCcEEEEecchhhhhhhhHHHHHHHHHHHHhhhc-CCCcEEEEeCCCCHHHHHH
Confidence 11122334445555554432 2678999999764 45667777766 33 2577888999999999999
Q ss_pred HHHHhhcCCCcEEEeccccccccCCCCccEEEEecCCC-ChhhHHhhhcccccCCCCceEEEEeCcccHHHHHHH
Q psy15524 702 VFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPS-SSTDYVHRVGRTARVGHEGSSLLFLIPSEVKLVEEL 775 (930)
Q Consensus 702 v~~~F~~~~~~vLv~T~~~~~GlDip~v~~VI~~~~p~-s~~~y~qr~GRagR~g~~g~~~~~~~~~e~~~~~~l 775 (930)
++++|++|+.+|||||+++++|+|+|++++||++++|. +...|.||+||+||.|+.|.|++++.+.+....+++
T Consensus 631 v~~~F~~G~~~ILVaT~vie~GIDiP~v~~VIi~d~~r~~l~~l~Qr~GRaGR~g~~g~~ill~~~~~~~~~~rl 705 (780)
T 1gm5_A 631 VMLEFAEGRYDILVSTTVIEVGIDVPRANVMVIENPERFGLAQLHQLRGRVGRGGQEAYCFLVVGDVGEEAMERL 705 (780)
T ss_dssp HHHHHTTTSSSBCCCSSCCCSCSCCTTCCEEEBCSCSSSCTTHHHHHHHTSCCSSTTCEEECCCCSCCHHHHHHH
T ss_pred HHHHHHCCCCeEEEECCCCCccccCCCCCEEEEeCCCCCCHHHHHHHhcccCcCCCCCEEEEEECCCChHHHHHH
Confidence 99999999999999999999999999999999999996 788999999999999999999999985444433333
|
| >4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-38 Score=391.95 Aligned_cols=336 Identities=19% Similarity=0.217 Sum_probs=243.5
Q ss_pred cCCCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHHHH
Q psy15524 409 GMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTK 488 (930)
Q Consensus 409 ~~~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~ 488 (930)
.++|+ |+|+|.++|+.+++|+|+++.||||||||++|++|+...+.. +.++||++||++|+.|+++.+.+
T Consensus 35 ~~~f~-l~~~Q~~aI~~il~g~~vlv~apTGsGKTlv~~~~i~~~~~~---------g~~vlvl~PtraLa~Q~~~~l~~ 104 (997)
T 4a4z_A 35 SWPFE-LDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMAHRN---------MTKTIYTSPIKALSNQKFRDFKE 104 (997)
T ss_dssp CCSSC-CCHHHHHHHHHHHTTCEEEEECCTTSCSHHHHHHHHHHHHHT---------TCEEEEEESCGGGHHHHHHHHHT
T ss_pred hCCCC-CCHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHHHHHhc---------CCeEEEEeCCHHHHHHHHHHHHH
Confidence 46774 899999999999999999999999999999999999876543 67899999999999999999998
Q ss_pred hhccCCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhccCCcccccceEEEEecchhhhhcCcHHHHHHHHH
Q psy15524 489 LCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLE 568 (930)
Q Consensus 489 ~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~l~~~g~~~~l~~i~~ 568 (930)
.+. ...++.++|+.... ...+|+|+|||+|.+++.. ....+.++++||+||||++.+++++..+..++.
T Consensus 105 ~~~---~~~v~~l~G~~~~~-------~~~~IlV~Tpe~L~~~l~~-~~~~l~~l~lvViDEaH~l~d~~~g~~~e~ii~ 173 (997)
T 4a4z_A 105 TFD---DVNIGLITGDVQIN-------PDANCLIMTTEILRSMLYR-GADLIRDVEFVIFDEVHYVNDQDRGVVWEEVII 173 (997)
T ss_dssp TC-----CCEEEECSSCEEC-------TTSSEEEEEHHHHHHHHHH-TCSGGGGEEEEEECCTTCCCTTCTTCCHHHHHH
T ss_pred HcC---CCeEEEEeCCCccC-------CCCCEEEECHHHHHHHHHh-CchhhcCCCEEEEECcccccccchHHHHHHHHH
Confidence 753 34567778876533 3579999999999988876 344578999999999999999999988888887
Q ss_pred HHhhcCccceEEEEccccCHHH--HHHHhhhcCCCEEEEccCCCCcccCccceec-------------------------
Q psy15524 569 ILKKQKPQFQSILLSATLTPAV--QRLAGMTLQNPIQIDAADSTDIHNTTDSLVI------------------------- 621 (930)
Q Consensus 569 ~l~~~~~~~q~vl~SAT~~~~~--~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~------------------------- 621 (930)
.++ +..|++++|||+++.. .++.......+..+........ .......
T Consensus 174 ~l~---~~v~iIlLSAT~~n~~ef~~~l~~~~~~~~~vi~~~~r~~--pl~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (997)
T 4a4z_A 174 MLP---QHVKFILLSATVPNTYEFANWIGRTKQKNIYVISTPKRPV--PLEINIWAKKELIPVINQNSEFLEANFRKHKE 248 (997)
T ss_dssp HSC---TTCEEEEEECCCTTHHHHHHHHHHHHTCCEEEEECSSCSS--CEEEEEEETTEEEEEECTTCCBCHHHHHHHHH
T ss_pred hcc---cCCCEEEEcCCCCChHHHHHHHhcccCCceEEEecCCCCc--cceEEEecCCcchhcccchhhhhHHHHHHHHH
Confidence 775 3789999999998653 3333332222222211111000 0000000
Q ss_pred -----------------------------------------------------------CCCceEEEEEcCchhhHHHHH
Q psy15524 622 -----------------------------------------------------------PDSLKQHFIVTPPKLRLVALA 642 (930)
Q Consensus 622 -----------------------------------------------------------~~~~~~~~~~~~~~~~~~~l~ 642 (930)
+......+...+...+...+.
T Consensus 249 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li 328 (997)
T 4a4z_A 249 ILNGESAKGAPSKTDNGRGGSTARGGRGGSNTRDGRGGRGNSTRGGANRGGSRGAGAIGSNKRKFFTQDGPSKKTWPEIV 328 (997)
T ss_dssp HHC-----------------------------------------------------------------CCCCTTHHHHHH
T ss_pred HhhccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhHHHHHH
Confidence 000000111223334455555
Q ss_pred HHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCC------------------------------------Cce
Q psy15524 643 SFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGE------------------------------------NIA 686 (930)
Q Consensus 643 ~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~------------------------------------~~~ 686 (930)
..+... ...++||||++++.++.++..|...... ...
T Consensus 329 ~~l~~~-------~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~g 401 (997)
T 4a4z_A 329 NYLRKR-------ELLPMVVFVFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERG 401 (997)
T ss_dssp HHHHHT-------TCCSEEEECSCHHHHHHHHHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHTTT
T ss_pred HHHHhC-------CCCCEEEEECCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHhhcC
Confidence 555432 2579999999999999999888652100 114
Q ss_pred EEEecCCCCHHHHHHHHHHhhcCCCcEEEeccccccccCCCCccEEE--------EecCCCChhhHHhhhcccccCCC--
Q psy15524 687 FFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIV--------QYTAPSSSTDYVHRVGRTARVGH-- 756 (930)
Q Consensus 687 ~~~lhg~~~~~~R~~v~~~F~~~~~~vLv~T~~~~~GlDip~v~~VI--------~~~~p~s~~~y~qr~GRagR~g~-- 756 (930)
+..+||+|++.+|..+++.|++|..+|||||+++++|+|+|++.+|+ +++.|.++.+|+||+|||||.|.
T Consensus 402 i~~~H~gl~~~~R~~v~~~F~~G~~kVLvAT~~~a~GIDiP~~~VVi~~~~k~dg~~~~~~s~~~y~Qr~GRAGR~G~~~ 481 (997)
T 4a4z_A 402 IAVHHGGLLPIVKELIEILFSKGFIKVLFATETFAMGLNLPTRTVIFSSIRKHDGNGLRELTPGEFTQMAGRAGRRGLDS 481 (997)
T ss_dssp EEEECTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCCSEEEESCSEEEETTEEEECCHHHHHHHHGGGCCTTTCS
T ss_pred eeeecCCCCHHHHHHHHHHHHCCCCcEEEEchHhhCCCCCCCceEEEeccccccCccCCCCCHHHHhHHhcccccCCCCc
Confidence 66779999999999999999999999999999999999999966555 23344499999999999999994
Q ss_pred CceEEEEeC--cccHHHHHHHHh
Q psy15524 757 EGSSLLFLI--PSEVKLVEELQN 777 (930)
Q Consensus 757 ~g~~~~~~~--~~e~~~~~~l~~ 777 (930)
.|.+++++. +.+...++.+..
T Consensus 482 ~G~vi~l~~~~~~~~~~~~~~i~ 504 (997)
T 4a4z_A 482 TGTVIVMAYNSPLSIATFKEVTM 504 (997)
T ss_dssp SEEEEEECCSSCCCHHHHHHHHH
T ss_pred ceEEEEecCCCcchHHHHHHHhc
Confidence 566666663 345556666643
|
| >2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-40 Score=376.54 Aligned_cols=372 Identities=13% Similarity=0.111 Sum_probs=255.4
Q ss_pred CCCCCCHHHHHhHHhhhcCCcE-EEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHHHHh
Q psy15524 411 NITQVTTVQQLSIQPILDGGDV-LVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKL 489 (930)
Q Consensus 411 ~~~~~~~iQ~~~i~~il~~~d~-lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~ 489 (930)
|+.+++|+|+ +||.+++++|+ +++||||||||++|++|++..+.. .+.++||++|||+||.|+++.+...
T Consensus 1 G~~q~~~iq~-~i~~~l~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~--------~~~~~lvl~Ptr~La~Q~~~~l~g~ 71 (451)
T 2jlq_A 1 GSAMGEPDYE-VDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALL--------RRLRTLILAPTRVVAAEMEEALRGL 71 (451)
T ss_dssp CCCCCSCCCC-CCGGGGSTTCEEEECCCTTSSCCTTHHHHHHHHHHH--------TTCCEEEEESSHHHHHHHHHHTTTS
T ss_pred CCCCCCCcHH-HHHHHHhcCCeEEEECCCCCCHhhHHHHHHHHHHHh--------cCCcEEEECCCHHHHHHHHHHhcCc
Confidence 6789999985 89999999886 999999999999999999987764 3678999999999999999987422
Q ss_pred hccCCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhccCCcccccceEEEEecchhhhhcCcHHHHHHHHHH
Q psy15524 490 CKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEI 569 (930)
Q Consensus 490 ~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~l~~~g~~~~l~~i~~~ 569 (930)
......+.... ....+..|.++|+|.+..++.+. ..+.++++||+||||++ +.++...+..+...
T Consensus 72 -------~v~~~~~~~~~-----~~~~~~~i~~~t~~~l~~~l~~~--~~l~~~~~iViDEah~~-~~~~~~~~~~~~~~ 136 (451)
T 2jlq_A 72 -------PIRYQTPAVKS-----DHTGREIVDLMCHATFTTRLLSS--TRVPNYNLIVMDEAHFT-DPCSVAARGYISTR 136 (451)
T ss_dssp -------CEEECCTTCSC-----CCCSSCCEEEEEHHHHHHHHHHC--SCCCCCSEEEEETTTCC-SHHHHHHHHHHHHH
T ss_pred -------eeeeeeccccc-----cCCCCceEEEEChHHHHHHhhCc--ccccCCCEEEEeCCccC-CcchHHHHHHHHHh
Confidence 11111111111 11235679999999998887653 45789999999999977 44444433333322
Q ss_pred HhhcCccceEEEEccccCHHHHHHHhhhcCCCEEEEccCCCCcccCccceecCCCceEEEEEcCchhhHHHHHHHHHhhc
Q psy15524 570 LKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALASFILGKC 649 (930)
Q Consensus 570 l~~~~~~~q~vl~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 649 (930)
. ..++.|+++||||+++.+..+ ...++..+..... .|.. .+ ..+...+...
T Consensus 137 ~--~~~~~~~i~~SAT~~~~~~~~---~~~~~~~~~~~~~-----------~p~~---~~---------~~~~~~l~~~- 187 (451)
T 2jlq_A 137 V--EMGEAAAIFMTATPPGSTDPF---PQSNSPIEDIERE-----------IPER---SW---------NTGFDWITDY- 187 (451)
T ss_dssp H--HTTSCEEEEECSSCTTCCCSS---CCCSSCEEEEECC-----------CCSS---CC---------SSSCHHHHHC-
T ss_pred h--cCCCceEEEEccCCCccchhh---hcCCCceEecCcc-----------CCch---hh---------HHHHHHHHhC-
Confidence 2 234789999999998743321 2233333322110 1100 00 0011222221
Q ss_pred cCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHHHHHHHHHHhhcCCCcEEEeccccccccCCCCc
Q psy15524 650 QNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLV 729 (930)
Q Consensus 650 ~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~v~~~F~~~~~~vLv~T~~~~~GlDip~v 729 (930)
.+++||||++++.++.+++.|.+. ++.+..+||++ +..+++.|++|+.+|||||+++++|+|+|+
T Consensus 188 -------~~~~lVF~~s~~~a~~l~~~L~~~---g~~~~~lh~~~----~~~~~~~f~~g~~~vLVaT~v~~~GiDip~- 252 (451)
T 2jlq_A 188 -------QGKTVWFVPSIKAGNDIANCLRKS---GKRVIQLSRKT----FDTEYPKTKLTDWDFVVTTDISEMGANFRA- 252 (451)
T ss_dssp -------CSCEEEECSSHHHHHHHHHHHHTT---TCCEEEECTTT----HHHHGGGGGSSCCSEEEECGGGGSSCCCCC-
T ss_pred -------CCCEEEEcCCHHHHHHHHHHHHHc---CCeEEECCHHH----HHHHHHhhccCCceEEEECCHHHhCcCCCC-
Confidence 569999999999999999999875 78888999976 357999999999999999999999999999
Q ss_pred cEEEEec--------------------CCCChhhHHhhhcccccCCC-CceEEEEeCcccH--HHH-----HHHHhcCCc
Q psy15524 730 DWIVQYT--------------------APSSSTDYVHRVGRTARVGH-EGSSLLFLIPSEV--KLV-----EELQNRRIR 781 (930)
Q Consensus 730 ~~VI~~~--------------------~p~s~~~y~qr~GRagR~g~-~g~~~~~~~~~e~--~~~-----~~l~~~~~~ 781 (930)
++||++| .|.+..+|+||+|||||.|. .|.+++|....+. ..+ ..+...++.
T Consensus 253 ~~VI~~~~~~~~~~d~~~~~~l~~~~~~p~s~~~y~Qr~GRaGR~g~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 332 (451)
T 2jlq_A 253 GRVIDPRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGDPLKNDEDHAHWTEAKMLLDNIY 332 (451)
T ss_dssp SEEEECCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTCHHHHHHHHHHTTCC
T ss_pred CEEEECCCcccccccccccceeeecccccCCHHHHHHhccccCCCCCCCccEEEEeCCchhhcchhHHHHHHHHHHhcCC
Confidence 9999998 99999999999999999998 8888887653321 111 111111111
Q ss_pred cchhchHHHHHhhhhhhccCccccccccchHHHHHHHHHHHHHHHHhcHHHHHHHhhhhHHHHHHhhhcccccccccccc
Q psy15524 782 IEEIKLKDCLQNLLSVKMEGDLSRLADGNVETAATALQMSFESAVLQQKILHTSACKGYTSWVRFYASYSKDLRHIFNFK 861 (930)
Q Consensus 782 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~a~~s~~~~y~~~~~~~~~~f~~~ 861 (930)
..+. ........+.+ .......+..+...++++|.++++.|..+ .+..|++.
T Consensus 333 ~~~~----------------~~~~~~~~e~~---------~~~~~~~~~~l~~~~~~~~~~~l~~~~~~---~~~~~~~~ 384 (451)
T 2jlq_A 333 TPEG----------------IIPTLFGPERE---------KTQAIDGEFRLRGEQRKTFVELMRRGDLP---VWLSYKVA 384 (451)
T ss_dssp CTTC----------------CCCCCCGGGGG---------GCCCCTTTTCCCHHHHHHHHHHHHTSCCC---HHHHHHHH
T ss_pred ChhH----------------hHHhhcCCchh---------hccCCCcccccCchhHHHHHHHHhhcCCc---HHHhHHHH
Confidence 1110 00000000000 00001112234456778999999988654 47889999
Q ss_pred cCChHHHHHhcCCCCCC
Q psy15524 862 QIHLGHFAKSFALRDAP 878 (930)
Q Consensus 862 ~l~~~~~a~sf~l~~~p 878 (930)
..++.-.+++|++..+|
T Consensus 385 ~~~~~~~~~~~~~~~~~ 401 (451)
T 2jlq_A 385 SAGISYKDREWCFTGER 401 (451)
T ss_dssp HTTCCTTCCGGGTCSCG
T ss_pred HcCCCcccchhhhcCCC
Confidence 99999999999999888
|
| >1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-41 Score=383.15 Aligned_cols=357 Identities=16% Similarity=0.185 Sum_probs=242.2
Q ss_pred hhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHHHHhhccCCCcceEEEeCC
Q psy15524 425 PILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGG 504 (930)
Q Consensus 425 ~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg 504 (930)
.+++|+|++++||||||||++|++|+++.+.. .+.+++|++||++||.|+++.+..+. .....+.
T Consensus 4 ~l~~g~~vlv~a~TGSGKT~~~l~~~l~~~~~--------~~~~~lil~Ptr~La~Q~~~~l~~~~-------v~~~~~~ 68 (440)
T 1yks_A 4 MLKKGMTTVLDFHPGAGKTRRFLPQILAECAR--------RRLRTLVLAPTRVVLSEMKEAFHGLD-------VKFHTQA 68 (440)
T ss_dssp TTSTTCEEEECCCTTSSTTTTHHHHHHHHHHH--------TTCCEEEEESSHHHHHHHHHHTTTSC-------EEEESSC
T ss_pred HhhCCCCEEEEcCCCCCHHHHHHHHHHHHHHh--------cCCeEEEEcchHHHHHHHHHHHhcCC-------eEEeccc
Confidence 46789999999999999999999999998764 36789999999999999999886432 1111111
Q ss_pred CchHHHHHHHhcCCcEEEECchhHHHhhhcc-------CCcccccceEEEEecchhhhhcCcHHHHHHHHHHHhhcCccc
Q psy15524 505 EKMKSEKARIRKGISILVATPGRLLDHCKHT-------ETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQF 577 (930)
Q Consensus 505 ~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~-------~~~~~~~l~~lVlDEah~l~~~g~~~~l~~i~~~l~~~~~~~ 577 (930)
. -.++||+++.+++... ....+++++++|+||||++ +.++...+..+...+. ..+.
T Consensus 69 ~--------------~~v~Tp~~l~~~l~~~~l~~~~~~~~~~~~l~~vViDEah~~-~~~~~~~~~~~~~~~~--~~~~ 131 (440)
T 1yks_A 69 F--------------SAHGSGREVIDAMCHATLTYRMLEPTRVVNWEVIIMDEAHFL-DPASIAARGWAAHRAR--ANES 131 (440)
T ss_dssp C--------------CCCCCSSCCEEEEEHHHHHHHHTSSSCCCCCSEEEETTTTCC-SHHHHHHHHHHHHHHH--TTSC
T ss_pred c--------------eeccCCccceeeecccchhHhhhCcccccCccEEEEECcccc-CcchHHHHHHHHHHhc--cCCc
Confidence 0 0388888876554431 1123789999999999998 4444444444444443 2478
Q ss_pred eEEEEccccCHHHHHHHhhhcCCCEEEEccCCCCcccCccceecCCCceEEEEEcCchhhHHHHHHHHHhhccCCCcCCC
Q psy15524 578 QSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEE 657 (930)
Q Consensus 578 q~vl~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~ 657 (930)
|+++||||+++.+..+... ..+... ....++..... .+...+... +
T Consensus 132 ~~l~~SAT~~~~~~~~~~~--~~~~~~-----------------------~~~~~~~~~~~-~~~~~l~~~--------~ 177 (440)
T 1yks_A 132 ATILMTATPPGTSDEFPHS--NGEIED-----------------------VQTDIPSEPWN-TGHDWILAD--------K 177 (440)
T ss_dssp EEEEECSSCTTCCCSSCCC--SSCEEE-----------------------EECCCCSSCCS-SSCHHHHHC--------C
T ss_pred eEEEEeCCCCchhhhhhhc--CCCeeE-----------------------eeeccChHHHH-HHHHHHHhc--------C
Confidence 9999999998754322221 011110 00001111110 111222221 5
Q ss_pred ceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHHHHHHHHHHhhcCCCcEEEeccccccccCCCCccEEEE---
Q psy15524 658 SKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQ--- 734 (930)
Q Consensus 658 ~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~v~~~F~~~~~~vLv~T~~~~~GlDip~v~~VI~--- 734 (930)
+++||||++++.++.+++.|... ++.+..+|| ++|..+++.|++|+.+|||||+++++|+|+| +++||+
T Consensus 178 ~~~lVF~~s~~~a~~l~~~L~~~---~~~v~~lhg----~~R~~~~~~F~~g~~~vLVaT~v~e~GiDip-v~~VI~~g~ 249 (440)
T 1yks_A 178 RPTAWFLPSIRAANVMAASLRKA---GKSVVVLNR----KTFEREYPTIKQKKPDFILATDIAEMGANLC-VERVLDCRT 249 (440)
T ss_dssp SCEEEECSCHHHHHHHHHHHHHT---TCCEEECCS----SSCC--------CCCSEEEESSSTTCCTTCC-CSEEEECCE
T ss_pred CCEEEEeCCHHHHHHHHHHHHHc---CCCEEEecc----hhHHHHHhhhcCCCceEEEECChhheeeccC-ceEEEeCCc
Confidence 79999999999999999999885 788999999 4688999999999999999999999999999 999986
Q ss_pred ----------------ecCCCChhhHHhhhcccccC-CCCceEEEEe---CcccHHHHHHHHhcCCccchhchHHHHHhh
Q psy15524 735 ----------------YTAPSSSTDYVHRVGRTARV-GHEGSSLLFL---IPSEVKLVEELQNRRIRIEEIKLKDCLQNL 794 (930)
Q Consensus 735 ----------------~~~p~s~~~y~qr~GRagR~-g~~g~~~~~~---~~~e~~~~~~l~~~~~~~~~~~~~~~~~~l 794 (930)
++.|.+..+|+||+||+||. |++|.|++|+ .+.+..+++.+... +.+.+..+..
T Consensus 250 ~~~pv~~~~~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~g~~~~l~~~~~~~~~~~l~~l~~~-~~~~~~~l~~----- 323 (440)
T 1yks_A 250 AFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGRNPNRDGDSYYYSEPTSENNAHHVCWLEAS-MLLDNMEVRG----- 323 (440)
T ss_dssp EEEEEEETTTTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTBHHHHHHH-HHHTTSCCGG-----
T ss_pred cceeeecccccceeeccccccCHHHHHHhccccCCCCCCCceEEEEeccCChhhhhhhhhhhHH-hccccccccc-----
Confidence 89999999999999999997 6899999996 67777777776543 2222221110
Q ss_pred hhhhccCccccccccchHHHHHHHHHHHHHHHHhcHHHHHHHhhhhHHHHHHhhhcccccccccccccCChHHHHHhcCC
Q psy15524 795 LSVKMEGDLSRLADGNVETAATALQMSFESAVLQQKILHTSACKGYTSWVRFYASYSKDLRHIFNFKQIHLGHFAKSFAL 874 (930)
Q Consensus 795 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~a~~s~~~~y~~~~~~~~~~f~~~~l~~~~~a~sf~l 874 (930)
...+.... . -|+.. ..+..+..+.+.+.++|.++++.|... .+..|++.+.+++..+++|++
T Consensus 324 ---~~~~~~~~-----~------~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 385 (440)
T 1yks_A 324 ---GMVAPLYG-----V------EGTKT-PVSPGEMRLRDDQRKVFRELVRNCDLP---VWLSWQVAKAGLKTNDRKWCF 385 (440)
T ss_dssp ---GCCCCCST-----T------HHHHS-SSCTTTTCCCHHHHHHHHHHHHTTCCC---HHHHHHHHHTTCCTTCCGGGS
T ss_pred ---cccccccc-----h------hhccC-CCCCcccccChhHHHHHHHHHHhcCCc---hhhhhhhhhcCCceeeeeEEe
Confidence 00000000 0 01111 113455567788999999999987643 235588999999999999999
Q ss_pred CCCCc
Q psy15524 875 RDAPS 879 (930)
Q Consensus 875 ~~~p~ 879 (930)
..+|+
T Consensus 386 ~~~~~ 390 (440)
T 1yks_A 386 EGPEE 390 (440)
T ss_dssp CSCGG
T ss_pred cCCCc
Confidence 99997
|
| >1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-37 Score=357.70 Aligned_cols=331 Identities=23% Similarity=0.262 Sum_probs=242.7
Q ss_pred CCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHHHHhhccC
Q psy15524 414 QVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSF 493 (930)
Q Consensus 414 ~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~ 493 (930)
.|+|+|.++++.++.+ ++++.+|||+|||++++++++..+.. .+.++|||+|+++|+.|+.+.+.+++..
T Consensus 9 ~l~~~Q~~~i~~~~~~-~~ll~~~tG~GKT~~~~~~~~~~~~~--------~~~~~liv~P~~~L~~q~~~~~~~~~~~- 78 (494)
T 1wp9_A 9 QPRIYQEVIYAKCKET-NCLIVLPTGLGKTLIAMMIAEYRLTK--------YGGKVLMLAPTKPLVLQHAESFRRLFNL- 78 (494)
T ss_dssp CCCHHHHHHHHHGGGS-CEEEECCTTSCHHHHHHHHHHHHHHH--------SCSCEEEECSSHHHHHHHHHHHHHHBCS-
T ss_pred CccHHHHHHHHHHhhC-CEEEEcCCCCCHHHHHHHHHHHHHhc--------CCCeEEEEECCHHHHHHHHHHHHHHhCc-
Confidence 6899999999999999 99999999999999999999987752 3567999999999999999999998742
Q ss_pred CCcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhccCCcccccceEEEEecchhhhhcCcHHHHHHHHHHHhhc
Q psy15524 494 TWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQ 573 (930)
Q Consensus 494 ~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~l~~~g~~~~l~~i~~~l~~~ 573 (930)
....+..+.|+..... ......+++|+|+||+++...+.. ..+.+.+++++|+||||++.+......+.. .+...
T Consensus 79 ~~~~v~~~~g~~~~~~-~~~~~~~~~ivv~T~~~l~~~~~~-~~~~~~~~~~vIiDEaH~~~~~~~~~~~~~---~~~~~ 153 (494)
T 1wp9_A 79 PPEKIVALTGEKSPEE-RSKAWARAKVIVATPQTIENDLLA-GRISLEDVSLIVFDEAHRAVGNYAYVFIAR---EYKRQ 153 (494)
T ss_dssp CGGGEEEECSCSCHHH-HHHHHHHCSEEEECHHHHHHHHHT-TSCCTTSCSEEEEETGGGCSTTCHHHHHHH---HHHHH
T ss_pred chhheEEeeCCcchhh-hhhhccCCCEEEecHHHHHHHHhc-CCcchhhceEEEEECCcccCCCCcHHHHHH---HHHhc
Confidence 2335566777765543 334445789999999999988775 445678999999999999986544333333 33333
Q ss_pred CccceEEEEccccCHH---HHHHHhhhcCCCEEEEccCCCCcccCccceecCCCceEEEEEc------------------
Q psy15524 574 KPQFQSILLSATLTPA---VQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVT------------------ 632 (930)
Q Consensus 574 ~~~~q~vl~SAT~~~~---~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------ 632 (930)
.+..+++++|||+.+. +..+.......+..+........ .....+..........
T Consensus 154 ~~~~~~l~lTaTp~~~~~~~~~l~~~l~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (494)
T 1wp9_A 154 AKNPLVIGLTASPGSTPEKIMEVINNLGIEHIEYRSENSPDV----RPYVKGIRFEWVRVDLPEIYKEVRKLLREMLRDA 229 (494)
T ss_dssp CSSCCEEEEESCSCSSHHHHHHHHHHTTCCEEEECCTTSTTT----GGGCCCCCEEEEEECCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEecCCCCCcHHHHHHHHhcChheeeccCCCcHHH----HHhcCCCceeEEecCCcHHHHHHHHHHHHHHHHH
Confidence 4478899999999743 34444333222221111110000 0000000000000000
Q ss_pred --------------------------------------------------------------------------------
Q psy15524 633 -------------------------------------------------------------------------------- 632 (930)
Q Consensus 633 -------------------------------------------------------------------------------- 632 (930)
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 309 (494)
T 1wp9_A 230 LKPLAETGLLESSSPDIPKKEVLRAGQIINEEMAKGNHDLRGLLLYHAMALKLHHAIELLETQGLSALRAYIKKLYEEAK 309 (494)
T ss_dssp HHHHHHHTSSSCCCTTSCHHHHHHHHHHHHHHHTTTCCSTTTHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccccccCCCcchhHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhhc
Confidence
Q ss_pred ------------------------------CchhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcC
Q psy15524 633 ------------------------------PPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLG 682 (930)
Q Consensus 633 ------------------------------~~~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~ 682 (930)
....|...+...+...... ..+.++||||++.+.++.+++.|...
T Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~---~~~~k~lVF~~~~~~~~~l~~~L~~~-- 384 (494)
T 1wp9_A 310 AGSTKASKEIFSDKRMKKAISLLVQAKEIGLDHPKMDKLKEIIREQLQR---KQNSKIIVFTNYRETAKKIVNELVKD-- 384 (494)
T ss_dssp TTCCHHHHHHHTSHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHH---CTTCCEEEECSCHHHHHHHHHHHHHT--
T ss_pred cccchhhhhhhhhHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhcc---CCCCeEEEEEccHHHHHHHHHHHHHc--
Confidence 1223444455555443211 13789999999999999999999886
Q ss_pred CCceEEEecC--------CCCHHHHHHHHHHhhcCCCcEEEeccccccccCCCCccEEEEecCCCChhhHHhhhcccccC
Q psy15524 683 ENIAFFKLHG--------SMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARV 754 (930)
Q Consensus 683 ~~~~~~~lhg--------~~~~~~R~~v~~~F~~~~~~vLv~T~~~~~GlDip~v~~VI~~~~p~s~~~y~qr~GRagR~ 754 (930)
++.+..+|| +|++.+|..+++.|++|+.+|||||+++++|+|+|++++||++|+|.++..|+||+||+||.
T Consensus 385 -~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~~~~~vLv~T~~~~~Gldl~~~~~Vi~~d~~~~~~~~~Qr~GR~~R~ 463 (494)
T 1wp9_A 385 -GIKAKRFVGQASKENDRGLSQREQKLILDEFARGEFNVLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRH 463 (494)
T ss_dssp -TCCEEEECCSSCC-------CCHHHHHHHHHHHTSCSEEEECGGGGGGGGSTTCCEEEESSCCHHHHHHHHHHTTSCSC
T ss_pred -CCCcEEEeccccccccccCCHHHHHHHHHHHhcCCceEEEECCccccCCCchhCCEEEEeCCCCCHHHHHHHHhhccCC
Confidence 788899999 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceEEEEeCcccHH
Q psy15524 755 GHEGSSLLFLIPSEVK 770 (930)
Q Consensus 755 g~~g~~~~~~~~~e~~ 770 (930)
|+ |.++.|+.+...+
T Consensus 464 g~-g~~~~l~~~~t~e 478 (494)
T 1wp9_A 464 MP-GRVIILMAKGTRD 478 (494)
T ss_dssp CC-SEEEEEEETTSHH
T ss_pred CC-ceEEEEEecCCHH
Confidence 98 9999999987543
|
| >2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=8.4e-37 Score=382.15 Aligned_cols=326 Identities=18% Similarity=0.220 Sum_probs=247.8
Q ss_pred CCCHHHHHHHHhcCCCCCCCHHHHHhHHhhhc----CC--cEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEE
Q psy15524 397 GIHPFMKKNLNEGMNITQVTTVQQLSIQPILD----GG--DVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAV 470 (930)
Q Consensus 397 ~l~~~~~~~l~~~~~~~~~~~iQ~~~i~~il~----~~--d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~l 470 (930)
..++...+.+.+.++|. +||+|.++|+.++. |+ |+++++|||+|||++|+++++..+. .+.+++
T Consensus 587 ~~~~~~~~~~~~~f~~~-~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~---------~g~~vl 656 (1151)
T 2eyq_A 587 KHDREQYQLFCDSFPFE-TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVD---------NHKQVA 656 (1151)
T ss_dssp CCCHHHHHHHHHTCCSC-CCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHT---------TTCEEE
T ss_pred CCCHHHHHHHHHhCCCC-CCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHH---------hCCeEE
Confidence 45556666777778986 69999999999987 66 8999999999999999999987654 367899
Q ss_pred EEccCHHHHHHHHHHHHHhhccCCCcceEEEeCCCchHHH---HHHHhc-CCcEEEECchhHHHhhhccCCcccccceEE
Q psy15524 471 IILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSE---KARIRK-GISILVATPGRLLDHCKHTETLKFSKVEHL 546 (930)
Q Consensus 471 il~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~---~~~~~~-~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~l 546 (930)
|++||++||.|+++.+.+.+..++ ..+..++|....... ...+.. .++|+|+||+.+. ....+++++++
T Consensus 657 vlvPt~~La~Q~~~~~~~~~~~~~-i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~------~~~~~~~l~lv 729 (1151)
T 2eyq_A 657 VLVPTTLLAQQHYDNFRDRFANWP-VRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQ------SDVKFKDLGLL 729 (1151)
T ss_dssp EECSSHHHHHHHHHHHHHHSTTTT-CCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHH------SCCCCSSEEEE
T ss_pred EEechHHHHHHHHHHHHHHhhcCC-CeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHh------CCccccccceE
Confidence 999999999999999998876554 345556665443332 333444 4999999998663 23567899999
Q ss_pred EEecchhhhhcCcHHHHHHHHHHHhhcCccceEEEEccccCHHHHHHHhhhcCCCEEEEccCCCCcccCccceecCCCce
Q psy15524 547 VLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLK 626 (930)
Q Consensus 547 VlDEah~l~~~g~~~~l~~i~~~l~~~~~~~q~vl~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 626 (930)
|+||+|++. .....++..++ ...++++||||+++....+....+.++..+...... ...+.
T Consensus 730 IiDEaH~~g-----~~~~~~l~~l~---~~~~vl~lSATp~p~~l~~~~~~~~~~~~i~~~~~~-----------r~~i~ 790 (1151)
T 2eyq_A 730 IVDEEHRFG-----VRHKERIKAMR---ANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPAR-----------RLAVK 790 (1151)
T ss_dssp EEESGGGSC-----HHHHHHHHHHH---TTSEEEEEESSCCCHHHHHHHTTTSEEEECCCCCCB-----------CBCEE
T ss_pred EEechHhcC-----hHHHHHHHHhc---CCCCEEEEcCCCChhhHHHHHhcCCCceEEecCCCC-----------ccccE
Confidence 999999953 22334444444 378999999999887766666666554433221110 01223
Q ss_pred EEEEEcCchhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHHHHHHHHHHh
Q psy15524 627 QHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTF 706 (930)
Q Consensus 627 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~v~~~F 706 (930)
..+....... .....+.... .+++++|||++++.++.+++.|.+.++ +..+..+||+|++.+|..++++|
T Consensus 791 ~~~~~~~~~~---i~~~il~~l~------~g~qvlvf~~~v~~~~~l~~~L~~~~p-~~~v~~lhg~~~~~eR~~il~~F 860 (1151)
T 2eyq_A 791 TFVREYDSMV---VREAILREIL------RGGQVYYLYNDVENIQKAAERLAELVP-EARIAIGHGQMRERELERVMNDF 860 (1151)
T ss_dssp EEEEECCHHH---HHHHHHHHHT------TTCEEEEECCCSSCHHHHHHHHHHHCT-TSCEEECCSSCCHHHHHHHHHHH
T ss_pred EEEecCCHHH---HHHHHHHHHh------cCCeEEEEECCHHHHHHHHHHHHHhCC-CCeEEEEeCCCCHHHHHHHHHHH
Confidence 3333222221 1222222211 267999999999999999999988753 67888999999999999999999
Q ss_pred hcCCCcEEEeccccccccCCCCccEEEEecC-CCChhhHHhhhcccccCCCCceEEEEeCccc
Q psy15524 707 RSVKSGVLICTDVAARGLDLPLVDWIVQYTA-PSSSTDYVHRVGRTARVGHEGSSLLFLIPSE 768 (930)
Q Consensus 707 ~~~~~~vLv~T~~~~~GlDip~v~~VI~~~~-p~s~~~y~qr~GRagR~g~~g~~~~~~~~~e 768 (930)
++|+.+|||||+++++|+|+|++++||.++. +.++.+|+||+||+||.|+.|.|++++.+.+
T Consensus 861 ~~g~~~VLVaT~v~e~GiDip~v~~VIi~~~~~~~l~~l~Qr~GRvgR~g~~g~~~ll~~~~~ 923 (1151)
T 2eyq_A 861 HHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPK 923 (1151)
T ss_dssp HTTSCCEEEESSTTGGGSCCTTEEEEEETTTTSSCHHHHHHHHTTCCBTTBCEEEEEEECCGG
T ss_pred HcCCCcEEEECCcceeeecccCCcEEEEeCCCCCCHHHHHHHHhccCcCCCceEEEEEECCcc
Confidence 9999999999999999999999999999988 5689999999999999999999999987653
|
| >4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-38 Score=388.02 Aligned_cols=337 Identities=21% Similarity=0.297 Sum_probs=225.7
Q ss_pred CCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHH-HHHHHHhhcc
Q psy15524 414 QVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQT-LEIFTKLCKS 492 (930)
Q Consensus 414 ~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~-~~~~~~~~~~ 492 (930)
.|+|+|.++++.++.|+|+++.+|||+|||++|++|+++.+..... ...+.++|||+|+++|+.|+ .+.+.+++..
T Consensus 7 ~l~~~Q~~~i~~il~g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~---~~~~~~vlvl~P~~~L~~Q~~~~~l~~~~~~ 83 (699)
T 4gl2_A 7 QLRPYQMEVAQPALEGKNIIICLPTGCGKTRVAVYIAKDHLDKKKK---ASEPGKVIVLVNKVLLVEQLFRKEFQPFLKK 83 (699)
T ss_dssp CCCHHHHHHHHHHHSSCCEEECCCTTSCHHHHHHHHHHHHHHHHHH---HTCCCCBCCEESCSHHHHHHHHHTHHHHHTT
T ss_pred CccHHHHHHHHHHHhCCCEEEEcCCCCcHHHHHHHHHHHHHHhccc---cCCCCeEEEEECCHHHHHHHHHHHHHHHcCc
Confidence 7999999999999999999999999999999999999998876321 12346799999999999999 9999998864
Q ss_pred CCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhc-----cCCcccccceEEEEecchhhhhcCcH-HHHHHH
Q psy15524 493 FTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKH-----TETLKFSKVEHLVLDEADRILDQGYE-RDIAEF 566 (930)
Q Consensus 493 ~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~-----~~~~~~~~l~~lVlDEah~l~~~g~~-~~l~~i 566 (930)
...+..+.|+.........+..+.+|+|+||++|.+++.+ ...+.+.++++||+||||++...++. ..+..+
T Consensus 84 --~~~v~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvViDEaH~~~~~~~~~~i~~~~ 161 (699)
T 4gl2_A 84 --WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMRHY 161 (699)
T ss_dssp --TSCEEEEC----CCCCHHHHHHSCSEEEEEHHHHHHHTC--------CCCGGGCSEEEEESGGGCBTTBSSCSHHHHH
T ss_pred --CceEEEEeCCcchhhHHHhhhcCCCEEEECHHHHHHHHhccccccccceecccCcEEEEECccccCccchHHHHHHHH
Confidence 2556778888766555556667899999999999988843 23456789999999999998665432 333322
Q ss_pred HHH-HhhcC---------ccceEEEEccccCHH-----------HHHHHhhhcCCCEEEEccCCCCcccCccceecCCCc
Q psy15524 567 LEI-LKKQK---------PQFQSILLSATLTPA-----------VQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSL 625 (930)
Q Consensus 567 ~~~-l~~~~---------~~~q~vl~SAT~~~~-----------~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 625 (930)
+.. +.... +..+++++|||++.. +..+....-.. .+...... ..... ...+...
T Consensus 162 l~~~~~~~~~~~~~~~~~~~~~il~lTATp~~~~~~~~~~~~~~i~~l~~~l~~~--~i~~~~~~-~~~l~--~~~~~p~ 236 (699)
T 4gl2_A 162 LMQKLKNNRLKKENKPVIPLPQILGLTASPGVGGATKQAKAEEHILKLCANLDAF--TIKTVKEN-LDQLK--NQIQEPC 236 (699)
T ss_dssp HHHHHHHHHHHC----CCCCCEEEEECSCCCCCSCCSHHHHHHHHHHHHHHHTCS--CCCCCCTT-HHHHH--HHSCCCE
T ss_pred HHhhhcccccccccccCCCCCEEEEecccccccccccHHHHHHHHHHHHhhcCCC--EEEeecCc-hHHHh--hhcCCCc
Confidence 222 21111 467999999999862 22222221110 00000000 00000 0000000
Q ss_pred eEEEEEcCc-----------------------------------------------------------------------
Q psy15524 626 KQHFIVTPP----------------------------------------------------------------------- 634 (930)
Q Consensus 626 ~~~~~~~~~----------------------------------------------------------------------- 634 (930)
. .+..+..
T Consensus 237 ~-~~~~~~~~~~~~~~~~l~~l~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 315 (699)
T 4gl2_A 237 K-KFAIADATREDPFKEKLLEIMTRIQTYCQMSPMSDFGTQPYEQWAIQMEKKAAKEGNRKERVCAEHLRKYNEALQIND 315 (699)
T ss_dssp E-EEEEEC-----CHHHHHHHHHHHHHHHHTCCCCSCSSSHHHHHHHHHHHHHHHHHTCTTTHHHHHHHHHHHHHHHHHH
T ss_pred e-EEEEcccccCChHHHHHHHHHHHHHHHhccCcchhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 0 1110000
Q ss_pred ----------------------------------------------------------------hhhHHHHHHHHHhhcc
Q psy15524 635 ----------------------------------------------------------------KLRLVALASFILGKCQ 650 (930)
Q Consensus 635 ----------------------------------------------------------------~~~~~~l~~~l~~~~~ 650 (930)
..|...+...+.....
T Consensus 316 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~~L~~~~~ 395 (699)
T 4gl2_A 316 TIRMIDAYTHLETFYNEEKDKKFAVIEDDLKKPLKLDETDRFLMTLFFENNKMLKRLAENPEYENEKLTKLRNTIMEQYT 395 (699)
T ss_dssp HSCHHHHHHHHHHHHHHHHHHHC------------CCHHHHHHHHHHHHHHHHHHHHHTCCC----CSSCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhccccccccccccccchhHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHh
Confidence 0011111112211110
Q ss_pred CCCcCC-CceEEEEecchhhHHHHHHHHhhh--cC-CCceEEEecCC--------CCHHHHHHHHHHhhcCCCcEEEecc
Q psy15524 651 NVNEDE-ESKMLVFMATQDMADYHTELLSTV--LG-ENIAFFKLHGS--------MSQSERTEVFKTFRSVKSGVLICTD 718 (930)
Q Consensus 651 ~~~~~~-~~k~iVF~~s~~~~~~~~~~l~~~--~~-~~~~~~~lhg~--------~~~~~R~~v~~~F~~~~~~vLv~T~ 718 (930)
..+ +.++||||++++.++.+++.|... +. .|+.+..+||+ |++.+|..++++|++|+.+|||||+
T Consensus 396 ---~~~~~~~~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT~ 472 (699)
T 4gl2_A 396 ---RTEESARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATT 472 (699)
T ss_dssp ---HSSSCCCEEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEEC
T ss_pred ---cCCCCCcEEEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEcc
Confidence 012 679999999999999999999864 11 16788899999 9999999999999999999999999
Q ss_pred ccccccCCCCccEEEEecCCCChhhHHhhhcccccCCCCceEEEEeCcc
Q psy15524 719 VAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPS 767 (930)
Q Consensus 719 ~~~~GlDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~ 767 (930)
++++|||+|+|++||+||+|.++..|+||+|||||.| .+++++.+.
T Consensus 473 ~~~~GIDip~v~~VI~~d~p~s~~~~~Qr~GRArr~g---~~~~l~~~~ 518 (699)
T 4gl2_A 473 VAEEGLDIKECNIVIRYGLVTNEIAMVQARGRARADE---STYVLVAHS 518 (699)
T ss_dssp SCCTTSCCCSCCCCEEESCCCCHHHHHHHHTTSCSSS---CEEEEEEES
T ss_pred ccccCCccccCCEEEEeCCCCCHHHHHHHcCCCCCCC---ceEEEEEeC
Confidence 9999999999999999999999999999999976644 555555543
|
| >2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.5e-40 Score=373.52 Aligned_cols=363 Identities=15% Similarity=0.184 Sum_probs=243.6
Q ss_pred HHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHHHHhhccCCCcceEEEe
Q psy15524 423 IQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLT 502 (930)
Q Consensus 423 i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~ 502 (930)
...+.++++++++||||||||++|++|+++.+.. .+.++||++|||+||.|+++.+... ......
T Consensus 15 ~~~l~~~~~vlv~a~TGsGKT~~~~l~il~~~~~--------~~~~~lvl~Ptr~La~Q~~~~l~g~-------~v~~~~ 79 (459)
T 2z83_A 15 PNMLRKRQMTVLDLHPGSGKTRKILPQIIKDAIQ--------QRLRTAVLAPTRVVAAEMAEALRGL-------PVRYQT 79 (459)
T ss_dssp CGGGSTTCEEEECCCTTSCTTTTHHHHHHHHHHH--------TTCCEEEEECSHHHHHHHHHHTTTS-------CEEECC
T ss_pred HHHHhcCCcEEEECCCCCCHHHHHHHHHHHHHHh--------CCCcEEEECchHHHHHHHHHHhcCc-------eEeEEe
Confidence 4456678899999999999999999999988764 3678999999999999999988621 111111
Q ss_pred CCCchHHHHHHHhcCCcEEEECchhHHHhhhccCCcccccceEEEEecchh-----hhhcCcHHHHHHHHHHHhhcCccc
Q psy15524 503 GGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADR-----ILDQGYERDIAEFLEILKKQKPQF 577 (930)
Q Consensus 503 gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~-----l~~~g~~~~l~~i~~~l~~~~~~~ 577 (930)
+.... .-..+..+.++|.+.+...+.. ...++++++||+||||+ ++..+|... ... .+..
T Consensus 80 ~~~~~-----~~t~~~~i~~~~~~~l~~~l~~--~~~l~~~~~iViDEaH~~~~~~~~~~~~~~~------~~~--~~~~ 144 (459)
T 2z83_A 80 SAVQR-----EHQGNEIVDVMCHATLTHRLMS--PNRVPNYNLFVMDEAHFTDPASIAARGYIAT------KVE--LGEA 144 (459)
T ss_dssp -------------CCCSEEEEEHHHHHHHHHS--CC-CCCCSEEEESSTTCCSHHHHHHHHHHHH------HHH--TTSC
T ss_pred ccccc-----CCCCCcEEEEEchHHHHHHhhc--cccccCCcEEEEECCccCCchhhHHHHHHHH------Hhc--cCCc
Confidence 11100 0123456778888888766654 24578999999999998 444444222 111 2478
Q ss_pred eEEEEccccCHHHHHHHhhhcCCCEEEEccCCCCcccCccceecCCCceEEEEEcCchhhHHHHHHHHHhhccCCCcCCC
Q psy15524 578 QSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEE 657 (930)
Q Consensus 578 q~vl~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~ 657 (930)
|+++||||++..+..+... ..|+..... ..+. . ....+...+... .
T Consensus 145 ~~il~SAT~~~~~~~~~~~--~~pi~~~~~------------~~~~-----------~-~~~~~~~~l~~~--------~ 190 (459)
T 2z83_A 145 AAIFMTATPPGTTDPFPDS--NAPIHDLQD------------EIPD-----------R-AWSSGYEWITEY--------A 190 (459)
T ss_dssp EEEEECSSCTTCCCSSCCC--SSCEEEEEC------------CCCS-----------S-CCSSCCHHHHHC--------C
T ss_pred cEEEEEcCCCcchhhhccC--CCCeEEecc------------cCCc-----------c-hhHHHHHHHHhc--------C
Confidence 9999999998754322211 223222100 0000 0 000011222221 5
Q ss_pred ceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHHHHHHHHHHhhcCCCcEEEeccccccccCCCCccEEEE---
Q psy15524 658 SKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQ--- 734 (930)
Q Consensus 658 ~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~v~~~F~~~~~~vLv~T~~~~~GlDip~v~~VI~--- 734 (930)
+++||||++++.++.+++.|... ++.+..+||+ +|..+++.|++|+.+|||||+++++|+|+|+ ++||+
T Consensus 191 ~~~LVF~~s~~~~~~l~~~L~~~---g~~v~~lh~~----~R~~~~~~f~~g~~~iLVaT~v~~~GiDip~-~~VI~~G~ 262 (459)
T 2z83_A 191 GKTVWFVASVKMGNEIAMCLQRA---GKKVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFGA-SRVIDCRK 262 (459)
T ss_dssp SCEEEECSCHHHHHHHHHHHHHT---TCCEEEESTT----CCCCCGGGSSSCCCSEEEESSCC---CCCSC-SEEEECCE
T ss_pred CCEEEEeCChHHHHHHHHHHHhc---CCcEEecCHH----HHHHHHhhccCCCceEEEECChHHhCeecCC-CEEEECCc
Confidence 79999999999999999999885 7888899995 6888999999999999999999999999999 99999
Q ss_pred -----------------ecCCCChhhHHhhhcccccCCC-CceEEEEeCcc--cHHHHHHHHhcCCccchhchHHHHHhh
Q psy15524 735 -----------------YTAPSSSTDYVHRVGRTARVGH-EGSSLLFLIPS--EVKLVEELQNRRIRIEEIKLKDCLQNL 794 (930)
Q Consensus 735 -----------------~~~p~s~~~y~qr~GRagR~g~-~g~~~~~~~~~--e~~~~~~l~~~~~~~~~~~~~~~~~~l 794 (930)
||.|.+..+|+||+|||||.|. +|.+++|+.+. +...+..+....+.+.+....
T Consensus 263 ~~~~~~~~~~~~~~~~~~d~p~s~~~~~QR~GRaGR~g~~~G~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~------ 336 (459)
T 2z83_A 263 SVKPTILEEGEGRVILGNPSPITSASAAQRRGRVGRNPNQVGDEYHYGGATSEDDSNLAHWTEAKIMLDNIHMP------ 336 (459)
T ss_dssp ECCEEEECSSSCEEEECSCEECCHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTBHHHHHHHHHHHTSCCT------
T ss_pred ccccccccccccccccccCCCCCHHHHHHhccccCCCCCCCCeEEEEEcccccchhhhhhhhhHHHHHhcCCCh------
Confidence 7799999999999999999997 99999999885 333333332111111111100
Q ss_pred hhhhccCccccccccchHHHHHHHHHHHHHHHHhcHHHHHHHhhhhHHHHHHhhhcccccccccccccCChHHHHHhcCC
Q psy15524 795 LSVKMEGDLSRLADGNVETAATALQMSFESAVLQQKILHTSACKGYTSWVRFYASYSKDLRHIFNFKQIHLGHFAKSFAL 874 (930)
Q Consensus 795 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~a~~s~~~~y~~~~~~~~~~f~~~~l~~~~~a~sf~l 874 (930)
.+..... .+..... . ..+..+..+.+.++++|.+|++.|... .+..|++.++++...+++|++
T Consensus 337 -----~~~~~~~----~~p~~~k----~-~~~~~~~~l~~~~~~~~~~~l~~~d~~---~~~~~~~~~~~~~~~~~~~~~ 399 (459)
T 2z83_A 337 -----NGLVAQL----YGPEREK----A-FTMDGEYRLRGEEKKNFLELLRTADLP---VWLAYKVASNGIQYTDRKWCF 399 (459)
T ss_dssp -----TSCCCCC----CGGGGGG----C-CCCTTTTCCCHHHHHHHHHHHHTSCCC---HHHHHHHHHTTCCTTCCGGGT
T ss_pred -----HHHHHhc----cCCCccc----c-cccCcchhcchHHHHHHHHHHhhcCCC---hhHhHHHhhccCccccceeee
Confidence 0000000 0000000 0 011234456678899999999988853 678899999999999999999
Q ss_pred CCCCcc
Q psy15524 875 RDAPSV 880 (930)
Q Consensus 875 ~~~p~~ 880 (930)
..+|..
T Consensus 400 ~~~~~~ 405 (459)
T 2z83_A 400 DGPRTN 405 (459)
T ss_dssp CSCGGG
T ss_pred eCCCCC
Confidence 999953
|
| >2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-39 Score=383.16 Aligned_cols=368 Identities=15% Similarity=0.195 Sum_probs=245.0
Q ss_pred CCCHHHH-----HhHHhhh------cCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHH
Q psy15524 414 QVTTVQQ-----LSIQPIL------DGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQT 482 (930)
Q Consensus 414 ~~~~iQ~-----~~i~~il------~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~ 482 (930)
.||++|+ ++||.++ +++|++++||||||||++|++|+++.+.. .+.++||++||++||.|+
T Consensus 215 ~pt~IQ~~~r~~~aIp~~l~~~~l~~g~dvlv~apTGSGKTl~~ll~il~~l~~--------~~~~~lilaPTr~La~Q~ 286 (673)
T 2wv9_A 215 YVSAIVQGERVEEPVPEAYNPEMLKKRQLTVLDLHPGAGKTRRILPQIIKDAIQ--------KRLRTAVLAPTRVVAAEM 286 (673)
T ss_dssp EEEEEECC-------CCCCCGGGGSTTCEEEECCCTTTTTTTTHHHHHHHHHHH--------TTCCEEEEESSHHHHHHH
T ss_pred ccCceeeccccccchHHHhhHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHh--------CCCcEEEEccHHHHHHHH
Confidence 8999999 9999998 89999999999999999999999988764 367899999999999999
Q ss_pred HHHHHHhhccCCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhcc-------CCcccccceEEEEecchhhh
Q psy15524 483 LEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHT-------ETLKFSKVEHLVLDEADRIL 555 (930)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~-------~~~~~~~l~~lVlDEah~l~ 555 (930)
++.+..+. .....+... .++||+++++++... ....++++++||+||||++
T Consensus 287 ~~~l~~~~-------i~~~~~~l~--------------~v~tp~~ll~~l~~~~l~~~l~~~~~l~~l~lvViDEaH~~- 344 (673)
T 2wv9_A 287 AEALRGLP-------VRYLTPAVQ--------------REHSGNEIVDVMCHATLTHRLMSPLRVPNYNLFVMDEAHFT- 344 (673)
T ss_dssp HHHTTTSC-------CEECCC-----------------CCCCSCCCEEEEEHHHHHHHHHSSSCCCCCSEEEEESTTCC-
T ss_pred HHHHhcCC-------eeeeccccc--------------ccCCHHHHHHHHHhhhhHHHHhcccccccceEEEEeCCccc-
Confidence 98886442 111111000 156666654433221 1135789999999999998
Q ss_pred hcCcHHHHHHHHHHHhhcCccceEEEEccccCHHHHHHHhhhcCCCEEEEccCCCCcccCccceecCCCceEEEEEcCch
Q psy15524 556 DQGYERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPK 635 (930)
Q Consensus 556 ~~g~~~~l~~i~~~l~~~~~~~q~vl~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 635 (930)
+.++...+..+...++ ....|+++||||+++.+..+... ..|+. .+.. ..+..
T Consensus 345 ~~~~~~~~~~l~~~~~--~~~~~vl~~SAT~~~~i~~~~~~--~~~i~-~v~~----------------------~~~~~ 397 (673)
T 2wv9_A 345 DPASIAARGYIATRVE--AGEAAAIFMTATPPGTSDPFPDT--NSPVH-DVSS----------------------EIPDR 397 (673)
T ss_dssp CHHHHHHHHHHHHHHH--TTSCEEEEECSSCTTCCCSSCCC--SSCEE-EEEC----------------------CCCSS
T ss_pred CccHHHHHHHHHHhcc--ccCCcEEEEcCCCChhhhhhccc--CCceE-EEee----------------------ecCHH
Confidence 3323333333434433 14789999999998653322111 01111 0000 00111
Q ss_pred hhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHHHHHHHHHHhhcCCCcEEE
Q psy15524 636 LRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSVKSGVLI 715 (930)
Q Consensus 636 ~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~v~~~F~~~~~~vLv 715 (930)
.. ..+...+.. .++++||||++++.++.+++.|... ++.+..+||+ +|..+++.|++|+.+|||
T Consensus 398 ~~-~~~l~~l~~--------~~~~~lVF~~s~~~~e~la~~L~~~---g~~v~~lHg~----eR~~v~~~F~~g~~~VLV 461 (673)
T 2wv9_A 398 AW-SSGFEWITD--------YAGKTVWFVASVKMSNEIAQCLQRA---GKRVIQLNRK----SYDTEYPKCKNGDWDFVI 461 (673)
T ss_dssp CC-SSCCHHHHS--------CCSCEEEECSSHHHHHHHHHHHHTT---TCCEEEECSS----SHHHHGGGGGTCCCSEEE
T ss_pred HH-HHHHHHHHh--------CCCCEEEEECCHHHHHHHHHHHHhC---CCeEEEeChH----HHHHHHHHHHCCCceEEE
Confidence 10 011122221 1679999999999999999999875 7889999994 799999999999999999
Q ss_pred eccccccccCCCCccEEEE--------------------ecCCCChhhHHhhhcccccC-CCCceEEEEe---CcccHHH
Q psy15524 716 CTDVAARGLDLPLVDWIVQ--------------------YTAPSSSTDYVHRVGRTARV-GHEGSSLLFL---IPSEVKL 771 (930)
Q Consensus 716 ~T~~~~~GlDip~v~~VI~--------------------~~~p~s~~~y~qr~GRagR~-g~~g~~~~~~---~~~e~~~ 771 (930)
||+++++|+|+| +++||+ ||.|.+.++|+||+||+||. |+.|.|++|+ .+.+..+
T Consensus 462 aTdv~e~GIDip-v~~VI~~g~~~~p~vi~da~~r~~ll~d~P~s~~~y~Qr~GRaGR~~g~~G~ai~l~~~~~~~d~~~ 540 (673)
T 2wv9_A 462 TTDISEMGANFG-ASRVIDCRKSVKPTILDEGEGRVILSVPSAITSASAAQRRGRVGRNPSQIGDEYHYGGGTSEDDTML 540 (673)
T ss_dssp ECGGGGTTCCCC-CSEEEECCEECCEEEECSTTCEEEECCSEECCHHHHHHHHTTSSCCSSCCCEEEEECSCCCCCCTTB
T ss_pred ECchhhcceeeC-CcEEEECCCcccceeeecccccceecccCCCCHHHHHHHhhccCCCCCCCCEEEEEEecCChhHHHH
Confidence 999999999999 999998 67899999999999999999 7899999996 5677666
Q ss_pred HHHHHhcCCccchhchHHHHHhhhhhhccCccccccccchHHHHHHHHHHHHHHHHhcHHHHHHHhhhhHHHHHHhhhcc
Q psy15524 772 VEELQNRRIRIEEIKLKDCLQNLLSVKMEGDLSRLADGNVETAATALQMSFESAVLQQKILHTSACKGYTSWVRFYASYS 851 (930)
Q Consensus 772 ~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~a~~s~~~~y~~~~ 851 (930)
++.++.. +.++...+. .+....... . -|+.+.. +..+..+.+.++++|.++++.+...
T Consensus 541 l~~ie~~-~~l~~~~~~-----------~g~~~a~~~--~------~q~~~~~-~~~~~~l~~~a~~~~~~ll~~~~~~- 598 (673)
T 2wv9_A 541 AHWTEAK-ILLDNIHLP-----------NGLVAQLYG--P------ERDKTYT-MDGEYRLRGEERKTFLELIKTADLP- 598 (673)
T ss_dssp HHHHHHH-HHHHTSCBT-----------TTBCCCCCG--G------GGGGCCC-CTTTTCCCHHHHHHHHHHHHTSCCC-
T ss_pred HHHHHHH-HhhhhccCC-----------chhhhhccc--h------hhhcccc-chhhhhHHHHHHHHHHHHHhccCCc-
Confidence 6665442 111111110 011000000 0 0111111 2345567778888999888865432
Q ss_pred cccccccccccCChHHHHHhcCCCCCCc
Q psy15524 852 KDLRHIFNFKQIHLGHFAKSFALRDAPS 879 (930)
Q Consensus 852 ~~~~~~f~~~~l~~~~~a~sf~l~~~p~ 879 (930)
.+..|++....+....++|++..+|.
T Consensus 599 --~~l~~~~a~~~l~~~~~~w~~~~~~~ 624 (673)
T 2wv9_A 599 --VWLAYKVASNGIQYNDRKWCFDGPRS 624 (673)
T ss_dssp --HHHHHHHHHHTCCSSCCGGGTSSCTT
T ss_pred --hhHHHHHHHhcccccCceeEeeCCCc
Confidence 33445555666666667788888886
|
| >2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-36 Score=360.11 Aligned_cols=341 Identities=17% Similarity=0.225 Sum_probs=245.1
Q ss_pred CCCCCCCCCCHHHHHHHHhcCCCCCCCHHHHHhHHhhhcC-CcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCee
Q psy15524 390 TSYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDG-GDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIY 468 (930)
Q Consensus 390 ~~f~~l~~l~~~~~~~l~~~~~~~~~~~iQ~~~i~~il~~-~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~ 468 (930)
.+|+++ ++++.+.+.+.+. + ..|+++|+++|+.++.+ ++++++||||||||+ ++|++-.... .....+.+
T Consensus 72 ~~f~~~-~l~~~~~~~l~~r-~-~lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTt--llp~ll~~~~----~~~~~g~~ 142 (773)
T 2xau_A 72 NPFTGR-EFTPKYVDILKIR-R-ELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTT--QIPQFVLFDE----MPHLENTQ 142 (773)
T ss_dssp CTTTCS-BCCHHHHHHHHHH-T-TSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHH--HHHHHHHHHH----CGGGGTCE
T ss_pred CCcccc-CCCHHHHHHHHHh-h-cCChHHHHHHHHHHHhCCCeEEEECCCCCCHHH--HHHHHHHHhc----cccCCCce
Confidence 469999 8999999999763 5 78999999999998864 679999999999999 5676622211 11123677
Q ss_pred EEEEccCHHHHHHHHHHHHHhhccCCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhccCCcccccceEEEE
Q psy15524 469 AVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVL 548 (930)
Q Consensus 469 ~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVl 548 (930)
++|++|+|+|+.|+++.+...........++.-...... ...+.+|+++|||++..++... ..+.++++|||
T Consensus 143 ilvl~P~r~La~q~~~~l~~~~~~~v~~~vG~~i~~~~~------~~~~~~I~v~T~G~l~r~l~~~--~~l~~~~~lIl 214 (773)
T 2xau_A 143 VACTQPRRVAAMSVAQRVAEEMDVKLGEEVGYSIRFENK------TSNKTILKYMTDGMLLREAMED--HDLSRYSCIIL 214 (773)
T ss_dssp EEEEESCHHHHHHHHHHHHHHTTCCBTTTEEEEETTEEE------CCTTCSEEEEEHHHHHHHHHHS--TTCTTEEEEEE
T ss_pred EEecCchHHHHHHHHHHHHHHhCCchhheecceeccccc------cCCCCCEEEECHHHHHHHHhhC--ccccCCCEEEe
Confidence 999999999999999887665532222222222221111 1246789999999999877652 45789999999
Q ss_pred ecchh-hhhcCcHHHHHHHHHHHhhcCccceEEEEccccCHHHHHHHhhhcCCCEEEEccCCCCcccCccceecCCCceE
Q psy15524 549 DEADR-ILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQ 627 (930)
Q Consensus 549 DEah~-l~~~g~~~~l~~i~~~l~~~~~~~q~vl~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 627 (930)
||+|. .++..+ +..++..+....++.|++++|||++. ..+... +.++..+.+.... ..+.+
T Consensus 215 DEah~R~ld~d~---~~~~l~~l~~~~~~~~iIl~SAT~~~--~~l~~~-~~~~~vi~v~gr~------------~pv~~ 276 (773)
T 2xau_A 215 DEAHERTLATDI---LMGLLKQVVKRRPDLKIIIMSATLDA--EKFQRY-FNDAPLLAVPGRT------------YPVEL 276 (773)
T ss_dssp CSGGGCCHHHHH---HHHHHHHHHHHCTTCEEEEEESCSCC--HHHHHH-TTSCCEEECCCCC------------CCEEE
T ss_pred cCccccccchHH---HHHHHHHHHHhCCCceEEEEeccccH--HHHHHH-hcCCCcccccCcc------------cceEE
Confidence 99994 554321 12222333233357899999999964 344443 3433334432211 12344
Q ss_pred EEEEcCchhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhh--------cCCCceEEEecCCCCHHHH
Q psy15524 628 HFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTV--------LGENIAFFKLHGSMSQSER 699 (930)
Q Consensus 628 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~--------~~~~~~~~~lhg~~~~~~R 699 (930)
.|...+...........+...... ...+++||||++++.++.+++.|.+. ...++.+..+||+|++.+|
T Consensus 277 ~~~~~~~~~~~~~~l~~l~~~~~~---~~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR 353 (773)
T 2xau_A 277 YYTPEFQRDYLDSAIRTVLQIHAT---EEAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQ 353 (773)
T ss_dssp ECCSSCCSCHHHHHHHHHHHHHHH---SCSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHH
T ss_pred EEecCCchhHHHHHHHHHHHHHHh---cCCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHH
Confidence 444444444444333333332211 12679999999999999999998752 1247889999999999999
Q ss_pred HHHHHHhh-----cCCCcEEEeccccccccCCCCccEEEEecC------------------CCChhhHHhhhcccccCCC
Q psy15524 700 TEVFKTFR-----SVKSGVLICTDVAARGLDLPLVDWIVQYTA------------------PSSSTDYVHRVGRTARVGH 756 (930)
Q Consensus 700 ~~v~~~F~-----~~~~~vLv~T~~~~~GlDip~v~~VI~~~~------------------p~s~~~y~qr~GRagR~g~ 756 (930)
..+++.|. +|..+|||||+++++|||+|+|++||+++. |.|..+|+||+|||||. .
T Consensus 354 ~~v~~~f~~~~~~~g~~kVlVAT~iae~GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~-~ 432 (773)
T 2xau_A 354 QRIFEPAPESHNGRPGRKVVISTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-R 432 (773)
T ss_dssp GGGGSCCCCCSSSSCCEEEEEECTHHHHTCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSS-S
T ss_pred HHHHhhcccccCCCCceEEEEeCcHHHhCcCcCCeEEEEeCCCccceeeccccCccccccccCCHHHHHhhccccCCC-C
Confidence 99999999 999999999999999999999999999877 89999999999999999 7
Q ss_pred CceEEEEeCcccH
Q psy15524 757 EGSSLLFLIPSEV 769 (930)
Q Consensus 757 ~g~~~~~~~~~e~ 769 (930)
+|.|+.|+++.+.
T Consensus 433 ~G~~~~l~~~~~~ 445 (773)
T 2xau_A 433 PGKCFRLYTEEAF 445 (773)
T ss_dssp SEEEEESSCHHHH
T ss_pred CCEEEEEecHHHh
Confidence 9999999986654
|
| >2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-36 Score=350.36 Aligned_cols=320 Identities=15% Similarity=0.152 Sum_probs=228.0
Q ss_pred CCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHHHHhhc
Q psy15524 412 ITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCK 491 (930)
Q Consensus 412 ~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~ 491 (930)
...|+|+|.++++.++.++|+++++|||+|||++|++|+...+.. .+.++|||+||++|+.|+++.+.++..
T Consensus 111 ~~~l~~~Q~~ai~~~~~~~~~ll~~~tGsGKT~~~~~~~~~~~~~--------~~~~vlvl~P~~~L~~Q~~~~~~~~~~ 182 (510)
T 2oca_A 111 RIEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLEN--------YEGKILIIVPTTALTTQMADDFVDYRL 182 (510)
T ss_dssp EECCCHHHHHHHHHHHHHSEEEEECCSTTTHHHHHHHHHHHHHHH--------CSSEEEEEESSHHHHHHHHHHHHHTTS
T ss_pred CCCCCHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHHhC--------CCCeEEEEECcHHHHHHHHHHHHHhhc
Confidence 348999999999999999999999999999999999999887754 234899999999999999999988743
Q ss_pred cCCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhccCCcccccceEEEEecchhhhhcCcHHHHHHHHHHHh
Q psy15524 492 SFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILK 571 (930)
Q Consensus 492 ~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~l~~~g~~~~l~~i~~~l~ 571 (930)
++...+..+.|+...... ...+.+|+|+||+.+... ....+.++++||+||||++.. ..+..++ .
T Consensus 183 -~~~~~v~~~~~~~~~~~~---~~~~~~I~i~T~~~l~~~----~~~~~~~~~liIiDE~H~~~~----~~~~~il---~ 247 (510)
T 2oca_A 183 -FSHAMIKKIGGGASKDDK---YKNDAPVVVGTWQTVVKQ----PKEWFSQFGMMMNDECHLATG----KSISSII---S 247 (510)
T ss_dssp -SCGGGEEECGGGCCTTGG---GCTTCSEEEEEHHHHTTS----CGGGGGGEEEEEEETGGGCCH----HHHHHHG---G
T ss_pred -CCccceEEEecCCccccc---cccCCcEEEEeHHHHhhc----hhhhhhcCCEEEEECCcCCCc----ccHHHHH---H
Confidence 333455667777554332 346789999999976533 234578899999999999876 2334443 3
Q ss_pred hcCccceEEEEccccCHHHHHHH-hhhcCCCEEEEccCCCCcccCccceecCCCceEEEEEcC-----------------
Q psy15524 572 KQKPQFQSILLSATLTPAVQRLA-GMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTP----------------- 633 (930)
Q Consensus 572 ~~~~~~q~vl~SAT~~~~~~~l~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------- 633 (930)
......+++++|||+++....+. ...+.++..+........ ......+..........+
T Consensus 248 ~~~~~~~~l~lSATp~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (510)
T 2oca_A 248 GLNNCMFKFGLSGSLRDGKANIMQYVGMFGEIFKPVTTSKLM---EDGQVTELKINSIFLRYPDEFTTKLKGKTYQEEIK 324 (510)
T ss_dssp GCTTCCEEEEEESCGGGCSSCHHHHHHHHCSEECCCCCC------------CCEEEEEEEECCHHHHHHHTTCCHHHHHH
T ss_pred hcccCcEEEEEEeCCCCCcccHHHhHHhhCCeEEeeCHHHHh---hCCcCCCceEEEEeecCChHHhccccccchHHHHH
Confidence 33447799999999976532211 111223333222211100 000111111111111111
Q ss_pred ----chhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHHHHHHHHHHhhcC
Q psy15524 634 ----PKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSV 709 (930)
Q Consensus 634 ----~~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~v~~~F~~~ 709 (930)
...+...+...+..... ..+.++|||++ .+.++.+++.|.+. +..+..+||+|++.+|..+++.|++|
T Consensus 325 ~~~~~~~~~~~l~~~l~~~~~----~~~~~~ivf~~-~~~~~~l~~~L~~~---~~~v~~~~g~~~~~~r~~i~~~f~~g 396 (510)
T 2oca_A 325 IITGLSKRNKWIAKLAIKLAQ----KDENAFVMFKH-VSHGKAIFDLIKNE---YDKVYYVSGEVDTETRNIMKTLAENG 396 (510)
T ss_dssp HHHTCHHHHHHHHHHHHHHHT----TTCEEEEEESS-HHHHHHHHHHHHTT---CSSEEEESSSTTHHHHHHHHHHHHHC
T ss_pred HHhccHHHHHHHHHHHHHHHh----cCCCeEEEEec-HHHHHHHHHHHHHc---CCCeEEEECCCCHHHHHHHHHHHhCC
Confidence 11233334444443322 12556677776 88888899999875 44788899999999999999999999
Q ss_pred CCcEEEec-cccccccCCCCccEEEEecCCCChhhHHhhhcccccCCCCceEEEEeC
Q psy15524 710 KSGVLICT-DVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLI 765 (930)
Q Consensus 710 ~~~vLv~T-~~~~~GlDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~g~~~~~~~ 765 (930)
+.+||||| +++++|+|+|++++||++++|.++..|+||+||+||.|+.|.+++++.
T Consensus 397 ~~~vLv~T~~~~~~GiDip~v~~vi~~~~~~s~~~~~Q~~GR~gR~g~~~~~v~i~~ 453 (510)
T 2oca_A 397 KGIIIVASYGVFSTGISVKNLHHVVLAHGVKSKIIVLQTIGRVLRKHGSKTIATVWD 453 (510)
T ss_dssp CSCEEEEEHHHHHHSCCCCSEEEEEESSCCCSCCHHHHHHHHHHTTTCCCCCCEEEE
T ss_pred CCCEEEEEcChhhcccccccCcEEEEeCCCCCHHHHHHHHhcccccCCCCceEEEEE
Confidence 99999999 999999999999999999999999999999999999998875555554
|
| >3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-34 Score=322.12 Aligned_cols=332 Identities=17% Similarity=0.150 Sum_probs=235.3
Q ss_pred HHHHHhcCCCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHH
Q psy15524 403 KKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQT 482 (930)
Q Consensus 403 ~~~l~~~~~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~ 482 (930)
.++..+.+|+ .++++|....-.+..|+ |+++.||+|||+++.+|++-..+. |..+.||+||++||.|.
T Consensus 65 REAa~R~lg~-r~~dvQligg~~L~~G~--iaEM~TGEGKTLva~lp~~lnAL~---------G~~vhVvT~ndyLA~rd 132 (822)
T 3jux_A 65 REAARRTLGM-RPFDVQVMGGIALHEGK--VAEMKTGEGKTLAATMPIYLNALI---------GKGVHLVTVNDYLARRD 132 (822)
T ss_dssp HHHHHHHTSC-CCCHHHHHHHHHHHTTC--EEECCTTSCHHHHTHHHHHHHHTT---------SSCEEEEESSHHHHHHH
T ss_pred HHHHHHHhCC-CCcHHHHHHHHHHhCCC--hhhccCCCCccHHHHHHHHHHHhc---------CCceEEEeccHHHHHhH
Confidence 3344445665 57788888777777777 999999999999999999866543 77799999999999999
Q ss_pred HHHHHHhhccCCCcceEEEeCCC------------------------------------------------chHHHHHHH
Q psy15524 483 LEIFTKLCKSFTWIVPSWLTGGE------------------------------------------------KMKSEKARI 514 (930)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~~gg~------------------------------------------------~~~~~~~~~ 514 (930)
++.+..++..++.. +++++... ......++.
T Consensus 133 ae~m~~l~~~Lgls-vg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~err~ 211 (822)
T 3jux_A 133 ALWMGPVYLFLGLR-VGVINSLGKSYEVVWKNPDLARKAIEENWSVWPDGFNGEVLKEESMNKEAVEAFQVELKEITRKE 211 (822)
T ss_dssp HHHHHHHHHHTTCC-EEEEETTTEEEEEEESSHHHHHHHHHTTCCSSCTTCCSSSCCGGGSCHHHHTTTCEECCBCCHHH
T ss_pred HHHHHHHHHHhCCE-EEEEcCCCcccccccccchhhhhhhcccccccccccccccccccccccccchhccccCCHHHHHH
Confidence 99999999887754 45555510 111122333
Q ss_pred hcCCcEEEECchhH-HHhhhcc-----CCcccccceEEEEecchhhh-hc--------C-------cHHHHHHHHHHH--
Q psy15524 515 RKGISILVATPGRL-LDHCKHT-----ETLKFSKVEHLVLDEADRIL-DQ--------G-------YERDIAEFLEIL-- 570 (930)
Q Consensus 515 ~~~~~Ilv~Tp~rl-~~~l~~~-----~~~~~~~l~~lVlDEah~l~-~~--------g-------~~~~l~~i~~~l-- 570 (930)
...|||+++|...+ .|.|+.. .....+.+.+.|+||+|.++ |. | +...+..++..|
T Consensus 212 aY~~DItYgTn~EfgFDYLRDnm~~~~~~~vqR~~~~aIVDEvDSiLIDeArtPLiISg~~~~~~~~y~~~~~~v~~l~~ 291 (822)
T 3jux_A 212 AYLCDVTYGTNNEFGFDYLRDNLVLDYNDKVQRGHFYAIVDEADSVLIDEARTPLIISGPSKESPSVYRRFAQIAKKFVK 291 (822)
T ss_dssp HHHSSEEEEEHHHHHHHHHHHTSCSSTTSCCCCCCCEEEEETHHHHHTTGGGSCEEEECCCCSCHHHHHHHHHHTTSSCB
T ss_pred HhcCCCEEccCcchhhHhHHhhccCCHHHhccCCCCeEEEecccceeecCCCCCceeeCCCCCccHHHHHHHHHHHhcCc
Confidence 45689999999886 4444432 23345779999999999875 10 0 001111111111
Q ss_pred ------------------------------------------------hhc---Cc------------------------
Q psy15524 571 ------------------------------------------------KKQ---KP------------------------ 575 (930)
Q Consensus 571 ------------------------------------------------~~~---~~------------------------ 575 (930)
+.. ..
T Consensus 292 ~~dy~vdek~~~v~lTe~G~~~~E~~l~i~nly~~~n~~l~~~i~~AL~A~~l~~~d~dYiV~dg~V~iVDe~TGR~m~g 371 (822)
T 3jux_A 292 DKDFTVDEKARTIILTEEGVAKAEKIIGVENLYDPGNVSLLYHLINALKALHLFKKDVDYVVMNGEVIIVDEFTGRLLPG 371 (822)
T ss_dssp TTTEEECCSSSCEEECHHHHHHHHHHHTCSCTTSGGGHHHHHHHHHHHHHHHHSTTTSSEEEETTEEEECSSSSCSCCCS
T ss_pred CCcEEEEcccCeEEECHHHHHHHHHHhCCccccchhhhHHHHHHHHHHHHHHHHcCCCcEEEECCEEEEEECCCCcCCCC
Confidence 100 00
Q ss_pred -------------------------------------cceEEEEccccCHHHHHHHhhhcCCCEEEEccCCCCcccCccc
Q psy15524 576 -------------------------------------QFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDS 618 (930)
Q Consensus 576 -------------------------------------~~q~vl~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~ 618 (930)
-.++.+||+|.......+...+.-+ .+.+.....
T Consensus 372 rr~s~GLHQaiEaKEgv~i~~e~~tla~IT~Qn~Fr~Y~kL~GMTGTa~te~~Ef~~iY~l~--vv~IPtnkp------- 442 (822)
T 3jux_A 372 RRYSGGLHQAIEAKEGVPIKEESITYATITFQNYFRMYEKLAGMTGTAKTEESEFVQVYGME--VVVIPTHKP------- 442 (822)
T ss_dssp CCCGGGHHHHHHHHHSSCCCCCCCEEEEECHHHHHTTSSEEEEEESSCGGGHHHHHHHSCCC--EEECCCSSC-------
T ss_pred CcCchHHHHHHHHHcCCCCCCCcchhHHHHHHHHHHHhhHHeEECCCCchHHHHHHHHhCCe--EEEECCCCC-------
Confidence 1256777777776666665555322 222211100
Q ss_pred eecCCCce-EEEEEcCchhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHH
Q psy15524 619 LVIPDSLK-QHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQS 697 (930)
Q Consensus 619 ~~~~~~~~-~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~ 697 (930)
. .... +..+......|...+...+..... .+.++||||+|++.++.++..|.+. |+.+..+||++.+.
T Consensus 443 -~--~R~d~~d~vy~t~~eK~~al~~~I~~~~~-----~gqpVLVFt~S~e~sE~Ls~~L~~~---Gi~~~vLhgkq~~r 511 (822)
T 3jux_A 443 -M--IRKDHDDLVFRTQKEKYEKIVEEIEKRYK-----KGQPVLVGTTSIEKSELLSSMLKKK---GIPHQVLNAKYHEK 511 (822)
T ss_dssp -C--CCEECCCEEESSHHHHHHHHHHHHHHHHH-----HTCCEEEEESSHHHHHHHHHHHHTT---TCCCEEECSCHHHH
T ss_pred -c--ceeecCcEEEecHHHHHHHHHHHHHHHhh-----CCCCEEEEECCHHHHHHHHHHHHHC---CCCEEEeeCCchHH
Confidence 0 0111 124556777888888888875322 1679999999999999999999875 88888999997777
Q ss_pred HHHHHHHHhhcCCCcEEEeccccccccCCC--------CccEEEEecCCCChhhHHhhhcccccCCCCceEEEEeCcccH
Q psy15524 698 ERTEVFKTFRSVKSGVLICTDVAARGLDLP--------LVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPSEV 769 (930)
Q Consensus 698 ~R~~v~~~F~~~~~~vLv~T~~~~~GlDip--------~v~~VI~~~~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~e~ 769 (930)
+|..+.++|+.| .|+||||+++||+||+ +..+||+++.|.+...|+||+|||||+|.+|.+++|++.+|.
T Consensus 512 E~~ii~~ag~~g--~VtVATdmAgRGtDI~lg~~V~~~GglhVInte~Pes~r~y~qriGRTGRqG~~G~a~~fvsleD~ 589 (822)
T 3jux_A 512 EAEIVAKAGQKG--MVTIATNMAGRGTDIKLGPGVAELGGLCIIGTERHESRRIDNQLRGRAGRQGDPGESIFFLSLEDD 589 (822)
T ss_dssp HHHHHHHHHSTT--CEEEEETTTTTTCCCCCCTTTTTTTSCEEEESSCCSSHHHHHHHHTTSSCSSCCCEEEEEEETTSH
T ss_pred HHHHHHhCCCCC--eEEEEcchhhCCcCccCCcchhhcCCCEEEecCCCCCHHHHHHhhCccccCCCCeeEEEEechhHH
Confidence 777777777776 4999999999999998 667999999999999999999999999999999999998774
|
| >3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-36 Score=346.53 Aligned_cols=279 Identities=20% Similarity=0.208 Sum_probs=207.1
Q ss_pred CCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHHHHhhccCC
Q psy15524 415 VTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFT 494 (930)
Q Consensus 415 ~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~ 494 (930)
+.+.|..+++.+.+++|++++||||||||++|.+|+++ .+.++||++|||+||.|+++.+.+.+..
T Consensus 218 ~~~~q~~i~~~L~~~~~vlv~ApTGSGKT~a~~l~ll~------------~g~~vLVl~PTReLA~Qia~~l~~~~g~-- 283 (666)
T 3o8b_A 218 VFTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAA------------QGYKVLVLNPSVAATLGFGAYMSKAHGI-- 283 (666)
T ss_dssp SCCCCCSCCCCCSSCEEEEEECCTTSCTTTHHHHHHHH------------TTCCEEEEESCHHHHHHHHHHHHHHHSC--
T ss_pred cHHHHHHHHHHHHcCCeEEEEeCCchhHHHHHHHHHHH------------CCCeEEEEcchHHHHHHHHHHHHHHhCC--
Confidence 34456666666667889999999999999999999874 2557999999999999999988776542
Q ss_pred CcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhccCCcccccceEEEEecchhhhhcCcHHHHHHHHHHHhhcC
Q psy15524 495 WIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQK 574 (930)
Q Consensus 495 ~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~l~~~g~~~~l~~i~~~l~~~~ 574 (930)
..+..+|+.. ...+.+|+|+|||+|+ . ...+.++++++|||||||+ ++.+|...+..+++.++...
T Consensus 284 --~vg~~vG~~~-------~~~~~~IlV~TPGrLl---~-~~~l~l~~l~~lVlDEAH~-l~~~~~~~l~~Il~~l~~~~ 349 (666)
T 3o8b_A 284 --DPNIRTGVRT-------ITTGAPVTYSTYGKFL---A-DGGCSGGAYDIIICDECHS-TDSTTILGIGTVLDQAETAG 349 (666)
T ss_dssp --CCEEECSSCE-------ECCCCSEEEEEHHHHH---H-TTSCCTTSCSEEEETTTTC-CSHHHHHHHHHHHHHTTTTT
T ss_pred --CeeEEECcEe-------ccCCCCEEEECcHHHH---h-CCCcccCcccEEEEccchh-cCccHHHHHHHHHHhhhhcC
Confidence 2455666654 2457899999999984 2 2456788999999999975 57788888888888876522
Q ss_pred ccceEEEEccccCHHHHHHHhhhcCCCEEEEccCCCCcccCccceecCCCceEEEEEcCchhhHHHHHHHHHhhccCCCc
Q psy15524 575 PQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALASFILGKCQNVNE 654 (930)
Q Consensus 575 ~~~q~vl~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 654 (930)
...++++|||+++.+. ...+....+... .... ......... +. .
T Consensus 350 -~~llil~SAT~~~~i~------~~~p~i~~v~~~-----------~~~~----i~~~~~~~~-------l~-------~ 393 (666)
T 3o8b_A 350 -ARLVVLATATPPGSVT------VPHPNIEEVALS-----------NTGE----IPFYGKAIP-------IE-------A 393 (666)
T ss_dssp -CSEEEEEESSCTTCCC------CCCTTEEEEECB-----------SCSS----EEETTEEEC-------GG-------G
T ss_pred -CceEEEECCCCCcccc------cCCcceEEEeec-----------ccch----hHHHHhhhh-------hh-------h
Confidence 3346788999987311 111111111000 0000 000000000 00 1
Q ss_pred CCCceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHHHHHHHHHHhhcCCCcEEEeccccccccCCCCccEEE-
Q psy15524 655 DEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIV- 733 (930)
Q Consensus 655 ~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~v~~~F~~~~~~vLv~T~~~~~GlDip~v~~VI- 733 (930)
...+++||||++++.++.+++.|.+. ++.+..+||+|++++ |.++..+||||||+++||||+| +++||
T Consensus 394 ~~~~~vLVFv~Tr~~ae~la~~L~~~---g~~v~~lHG~l~q~e-------r~~~~~~VLVATdVaerGIDId-V~~VI~ 462 (666)
T 3o8b_A 394 IRGGRHLIFCHSKKKCDELAAKLSGL---GINAVAYYRGLDVSV-------IPTIGDVVVVATDALMTGYTGD-FDSVID 462 (666)
T ss_dssp SSSSEEEEECSCHHHHHHHHHHHHTT---TCCEEEECTTSCGGG-------SCSSSCEEEEECTTHHHHCCCC-BSEEEE
T ss_pred ccCCcEEEEeCCHHHHHHHHHHHHhC---CCcEEEecCCCCHHH-------HHhCCCcEEEECChHHccCCCC-CcEEEe
Confidence 12789999999999999999999875 788999999999875 5566679999999999999997 99998
Q ss_pred ---------Eec-----------CCCChhhHHhhhcccccCCCCceEEEEeCcccHH
Q psy15524 734 ---------QYT-----------APSSSTDYVHRVGRTARVGHEGSSLLFLIPSEVK 770 (930)
Q Consensus 734 ---------~~~-----------~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~e~~ 770 (930)
+|| .|.+.++|+||+||||| |++|. +.|+.+.|..
T Consensus 463 ~Gl~~~~ViNyDydP~~gl~~~~~P~s~~syiQRiGRtGR-g~~G~-i~lvt~~e~~ 517 (666)
T 3o8b_A 463 CNTCVTQTVDFSLDPTFTIETTTVPQDAVSRSQRRGRTGR-GRRGI-YRFVTPGERP 517 (666)
T ss_dssp CCEEEEEEEECCCSSSCEEEEEEEECBHHHHHHHHTTBCS-SSCEE-EEESCCCCBC
T ss_pred cCcccccccccccccccccccccCcCCHHHHHHHhccCCC-CCCCE-EEEEecchhh
Confidence 567 89999999999999999 99999 9999887654
|
| >2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-35 Score=342.31 Aligned_cols=297 Identities=19% Similarity=0.220 Sum_probs=216.1
Q ss_pred CCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHHHHhhccC
Q psy15524 414 QVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSF 493 (930)
Q Consensus 414 ~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~ 493 (930)
.|+|+|.++++.++.++++++++|||+|||++|+.++... +.++|||+|+++|+.|+.+.+.++
T Consensus 93 ~l~~~Q~~ai~~i~~~~~~ll~~~TGsGKT~~~l~~i~~~------------~~~~Lvl~P~~~L~~Q~~~~~~~~---- 156 (472)
T 2fwr_A 93 SLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL------------STPTLIVVPTLALAEQWKERLGIF---- 156 (472)
T ss_dssp CBCHHHHHHHHHHTTTTEEEEECCTTSCHHHHHHHHHHHH------------CSCEEEEESSHHHHHHHHHHGGGG----
T ss_pred CcCHHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHc------------CCCEEEEECCHHHHHHHHHHHHhC----
Confidence 6899999999999999999999999999999999988753 456999999999999999999883
Q ss_pred CCcc-eEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhccCCcccccceEEEEecchhhhhcCcHHHHHHHHHHHhh
Q psy15524 494 TWIV-PSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKK 572 (930)
Q Consensus 494 ~~~~-~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~l~~~g~~~~l~~i~~~l~~ 572 (930)
+ .. ++.+.|+... ..+|+|+||+.+...+... ..++++||+||||++.+.++.. ++..+
T Consensus 157 ~-~~~v~~~~g~~~~---------~~~Ivv~T~~~l~~~~~~~----~~~~~liIvDEaH~~~~~~~~~----~~~~~-- 216 (472)
T 2fwr_A 157 G-EEYVGEFSGRIKE---------LKPLTVSTYDSAYVNAEKL----GNRFMLLIFDEVHHLPAESYVQ----IAQMS-- 216 (472)
T ss_dssp C-GGGEEEBSSSCBC---------CCSEEEEEHHHHHHTHHHH----TTTCSEEEEETGGGTTSTTTHH----HHHTC--
T ss_pred C-CcceEEECCCcCC---------cCCEEEEEcHHHHHHHHHh----cCCCCEEEEECCcCCCChHHHH----HHHhc--
Confidence 2 33 5666666542 5799999999998766431 2468999999999999888764 33333
Q ss_pred cCccceEEEEccccCH-------------------HHHHHHhhhcCCCEEEEc--cCCCCc---------------ccCc
Q psy15524 573 QKPQFQSILLSATLTP-------------------AVQRLAGMTLQNPIQIDA--ADSTDI---------------HNTT 616 (930)
Q Consensus 573 ~~~~~q~vl~SAT~~~-------------------~~~~l~~~~~~~~~~i~~--~~~~~~---------------~~~~ 616 (930)
+..+++++|||+.. ...++...++.++..+.. ...... ....
T Consensus 217 --~~~~~l~lSATp~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 294 (472)
T 2fwr_A 217 --IAPFRLGLTATFEREDGRHEILKEVVGGKVFELFPDSLAGKHLAKYTIKRIFVPLAEDERVEYEKREKVYKQFLRARG 294 (472)
T ss_dssp --CCSEEEEEESCCCCTTSGGGSHHHHTCCEEEECCHHHHTSCCCCSEEECCEEECCCHHHHHHTTTTTHHHHSCSSSCC
T ss_pred --CCCeEEEEecCccCCCCHHHHHHHHhCCeEeecCHHHHhcCcCCCeEEEEEEcCCCHHHHHHHHHHHHHHHHHHHhcC
Confidence 35789999999972 123332222332221111 000000 0000
Q ss_pred cceecCCCceEE---------------------EEEcCchhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHH
Q psy15524 617 DSLVIPDSLKQH---------------------FIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTE 675 (930)
Q Consensus 617 ~~~~~~~~~~~~---------------------~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~ 675 (930)
.....+..+.+. ...+....+...+...+... .+.++||||++.+.++.+++
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~-------~~~k~lvF~~~~~~~~~l~~ 367 (472)
T 2fwr_A 295 ITLRRAEDFNKIVMASGYDERAYEALRAWEEARRIAFNSKNKIRKLREILERH-------RKDKIIIFTRHNELVYRISK 367 (472)
T ss_dssp CTTTCCSSSTTTTTTTCCSSSSSTTTHHHHHHHHHHHSCSHHHHHHHHHHHHT-------SSSCBCCBCSCHHHHHHHHH
T ss_pred ccccchhhHHHHHHHhccCHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHhC-------CCCcEEEEECCHHHHHHHHH
Confidence 000000000000 00122334556666666541 26799999999999999888
Q ss_pred HHhhhcCCCceEEEecCCCCHHHHHHHHHHhhcCCCcEEEeccccccccCCCCccEEEEecCCCChhhHHhhhcccccCC
Q psy15524 676 LLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVG 755 (930)
Q Consensus 676 ~l~~~~~~~~~~~~lhg~~~~~~R~~v~~~F~~~~~~vLv~T~~~~~GlDip~v~~VI~~~~p~s~~~y~qr~GRagR~g 755 (930)
.|. +..+||++++.+|..++++|++|+.+|||||+++++|+|+|++++||+++.|.++..|+||+||+||.|
T Consensus 368 ~l~--------~~~~~g~~~~~~R~~~~~~F~~g~~~vLv~T~~~~~Gldlp~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g 439 (472)
T 2fwr_A 368 VFL--------IPAITHRTSREEREEILEGFRTGRFRAIVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGRILRPS 439 (472)
T ss_dssp HTT--------CCBCCSSSCSHHHHTHHHHHHHSSCSBCBCSSCCCSSSCSCCBSEEEEECCSSCCHHHHHHHHHSBCCC
T ss_pred HhC--------cceeeCCCCHHHHHHHHHHHhCCCCCEEEEcCchhcCcccccCcEEEEECCCCCHHHHHHHHhhccCCC
Confidence 774 235799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC-ceEEEE
Q psy15524 756 HE-GSSLLF 763 (930)
Q Consensus 756 ~~-g~~~~~ 763 (930)
+. +.++++
T Consensus 440 ~~k~~~~i~ 448 (472)
T 2fwr_A 440 KGKKEAVLY 448 (472)
T ss_dssp TTTCCEEEE
T ss_pred CCCceEEEE
Confidence 65 455553
|
| >3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-34 Score=334.82 Aligned_cols=287 Identities=18% Similarity=0.171 Sum_probs=205.4
Q ss_pred HHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHHHHhhccCCCcceEEEe
Q psy15524 423 IQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLT 502 (930)
Q Consensus 423 i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~ 502 (930)
....+++++++++||||||||+ ++++.+... ..++|++|||+||.|+++.+.+.+ ..++.++
T Consensus 149 ~ar~l~rk~vlv~apTGSGKT~----~al~~l~~~---------~~gl~l~PtR~LA~Qi~~~l~~~g-----~~v~llt 210 (677)
T 3rc3_A 149 DARAMQRKIIFHSGPTNSGKTY----HAIQKYFSA---------KSGVYCGPLKLLAHEIFEKSNAAG-----VPCDLVT 210 (677)
T ss_dssp HHHTSCCEEEEEECCTTSSHHH----HHHHHHHHS---------SSEEEEESSHHHHHHHHHHHHHTT-----CCEEEEC
T ss_pred HHHhcCCCEEEEEcCCCCCHHH----HHHHHHHhc---------CCeEEEeCHHHHHHHHHHHHHhcC-----CcEEEEE
Confidence 3455689999999999999998 455555441 234999999999999999998863 3466777
Q ss_pred CCCchHHHHHHHhcCCcEEEECchhHHHhhhccC-Cc-ccccceEEEEecchhhhhcCcHHHHHHHHHHHhhcCccceEE
Q psy15524 503 GGEKMKSEKARIRKGISILVATPGRLLDHCKHTE-TL-KFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSI 580 (930)
Q Consensus 503 gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~-~~-~~~~l~~lVlDEah~l~~~g~~~~l~~i~~~l~~~~~~~q~v 580 (930)
|+... +++|||++.+++..+. .. ....++++|+||||++++.+|+..+..++..++. ...+++
T Consensus 211 G~~~~-------------iv~TpGr~~~il~~T~e~~~l~~~v~lvVIDEaH~l~d~~~g~~~~~~l~~l~~--~~i~il 275 (677)
T 3rc3_A 211 GEERV-------------TVQPNGKQASHVSCTVEMCSVTTPYEVAVIDEIQMIRDPARGWAWTRALLGLCA--EEVHLC 275 (677)
T ss_dssp SSCEE-------------CCSTTCCCCSEEEEEGGGCCSSSCEEEEEECSGGGGGCTTTHHHHHHHHHHCCE--EEEEEE
T ss_pred CCeeE-------------EecCCCcccceeEecHhHhhhcccCCEEEEecceecCCccchHHHHHHHHccCc--cceEEE
Confidence 77543 3444444443333221 11 2467899999999999999999988888777752 478999
Q ss_pred EEccccCHHHHHHHhhhcCCCEEEEccCCCCcccCccceecCCCceEEEEEcCchhhHHHHHHHHHhhccCCCcCCCceE
Q psy15524 581 LLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKM 660 (930)
Q Consensus 581 l~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~k~ 660 (930)
++|||. +.+..+.... ..+..+...... ..+ .+ ..... ..+.. ...+.
T Consensus 276 ~~SAT~-~~i~~l~~~~-~~~~~v~~~~r~------------~~l--~~--~~~~l------~~l~~--------~~~g~ 323 (677)
T 3rc3_A 276 GEPAAI-DLVMELMYTT-GEEVEVRDYKRL------------TPI--SV--LDHAL------ESLDN--------LRPGD 323 (677)
T ss_dssp ECGGGH-HHHHHHHHHH-TCCEEEEECCCS------------SCE--EE--CSSCC------CSGGG--------CCTTE
T ss_pred eccchH-HHHHHHHHhc-CCceEEEEeeec------------chH--HH--HHHHH------HHHHh--------cCCCC
Confidence 999996 3355555443 233333221100 000 00 00000 00000 02345
Q ss_pred EEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHHHHHHHHHHhhc--CCCcEEEeccccccccCCCCccEEEEecC-
Q psy15524 661 LVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRS--VKSGVLICTDVAARGLDLPLVDWIVQYTA- 737 (930)
Q Consensus 661 iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~v~~~F~~--~~~~vLv~T~~~~~GlDip~v~~VI~~~~- 737 (930)
+|||++++.++.+++.|.+. ++.+..+||+|++.+|..+++.|++ |+.+|||||+++++|+|+ ++++||+++.
T Consensus 324 iIf~~s~~~ie~la~~L~~~---g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATdi~e~GlDi-~v~~VI~~~~~ 399 (677)
T 3rc3_A 324 CIVCFSKNDIYSVSRQIEIR---GLESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATDAIGMGLNL-SIRRIIFYSLI 399 (677)
T ss_dssp EEECSSHHHHHHHHHHHHHT---TCCCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEECGGGGSSCCC-CBSEEEESCSB
T ss_pred EEEEcCHHHHHHHHHHHHhc---CCCeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeCcHHHCCcCc-CccEEEECCcc
Confidence 88999999999999999874 6788889999999999999999999 889999999999999999 8999999998
Q ss_pred -------------CCChhhHHhhhcccccCCCCce--EEEEeCcccHHHHHHHHhc
Q psy15524 738 -------------PSSSTDYVHRVGRTARVGHEGS--SLLFLIPSEVKLVEELQNR 778 (930)
Q Consensus 738 -------------p~s~~~y~qr~GRagR~g~~g~--~~~~~~~~e~~~~~~l~~~ 778 (930)
|.+..+|+||+|||||.|..|. .++++.+++...++.+...
T Consensus 400 k~~~~~~G~~~~~p~s~~~~~QR~GRAGR~g~~g~~G~v~~l~~~d~~~~~~~~~~ 455 (677)
T 3rc3_A 400 KPSINEKGERELEPITTSQALQIAGRAGRFSSRFKEGEVTTMNHEDLSLLKEILKR 455 (677)
T ss_dssp C-----------CBCCHHHHHHHHTTBTCTTSSCSSEEEEESSTTHHHHHHHHHHS
T ss_pred ccccccCCccccccCCHHHHHHHhcCCCCCCCCCCCEEEEEEecchHHHHHHHHhc
Confidence 7899999999999999997632 3344455666666666554
|
| >2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-34 Score=322.86 Aligned_cols=270 Identities=15% Similarity=0.149 Sum_probs=189.6
Q ss_pred cCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHHHHhhccCCCcceEEEeCCCch
Q psy15524 428 DGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKM 507 (930)
Q Consensus 428 ~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~ 507 (930)
+|+|++++||||||||++|++|+++.+.. .+.+++|++||++||.|+++.+.. ..+...+|+...
T Consensus 1 kg~~~lv~a~TGsGKT~~~l~~~l~~~~~--------~g~~~lvl~Pt~~La~Q~~~~~~~-------~~v~~~~~~~~~ 65 (431)
T 2v6i_A 1 KRELTVLDLHPGAGKTRRVLPQLVREAVK--------KRLRTVILAPTRVVASEMYEALRG-------EPIRYMTPAVQS 65 (431)
T ss_dssp -CCEEEEECCTTSCTTTTHHHHHHHHHHH--------TTCCEEEEESSHHHHHHHHHHTTT-------SCEEEC------
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHh--------CCCCEEEECcHHHHHHHHHHHhCC-------CeEEEEecCccc
Confidence 37899999999999999999999977654 367899999999999999987751 223344443211
Q ss_pred HHHHHHHhcCCcEEEECchhHHHhhhccCCcccccceEEEEecchhhhhcCcHHHHHHHHHHHhhcCccceEEEEccccC
Q psy15524 508 KSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLT 587 (930)
Q Consensus 508 ~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~l~~~g~~~~l~~i~~~l~~~~~~~q~vl~SAT~~ 587 (930)
....+.-+.+.|.|.+...+.. ...+.+++++|+||||++ +.++......+..... .+.+|+++||||++
T Consensus 66 -----~~~~~~~~~~~~~~~l~~~l~~--~~~~~~l~~vViDEaH~~-~~~~~~~~~~l~~~~~--~~~~~~l~~SAT~~ 135 (431)
T 2v6i_A 66 -----ERTGNEIVDFMCHSTFTMKLLQ--GVRVPNYNLYIMDEAHFL-DPASVAARGYIETRVS--MGDAGAIFMTATPP 135 (431)
T ss_dssp --------CCCSEEEEEHHHHHHHHHH--TCCCCCCSEEEEESTTCC-SHHHHHHHHHHHHHHH--TTSCEEEEEESSCT
T ss_pred -----cCCCCceEEEEchHHHHHHHhc--CccccCCCEEEEeCCccC-CccHHHHHHHHHHHhh--CCCCcEEEEeCCCC
Confidence 1123456778888888665554 345789999999999997 4444444444444432 34789999999998
Q ss_pred HHHHHHHhhhcCCCEEEEccCCCCcccCccceecCCCceEEEEEcCchhhHHHHHHHHHhhccCCCcCCCceEEEEecch
Q psy15524 588 PAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQ 667 (930)
Q Consensus 588 ~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~ 667 (930)
+.+..+... ..|+. ... ...+. .+...+...+.. .++++||||+++
T Consensus 136 ~~~~~~~~~--~~~i~-~~~----------------------~~~~~-~~~~~~~~~l~~--------~~~~~lVF~~~~ 181 (431)
T 2v6i_A 136 GTTEAFPPS--NSPII-DEE----------------------TRIPD-KAWNSGYEWITE--------FDGRTVWFVHSI 181 (431)
T ss_dssp TCCCSSCCC--SSCCE-EEE----------------------CCCCS-SCCSSCCHHHHS--------CSSCEEEECSSH
T ss_pred cchhhhcCC--CCcee-ecc----------------------ccCCH-HHHHHHHHHHHc--------CCCCEEEEeCCH
Confidence 732211110 00100 000 00011 111111222322 156899999999
Q ss_pred hhHHHHHHHHhhhcCCCceEEEecCCCCHHHHHHHHHHhhcCCCcEEEeccccccccCCCCccE----------------
Q psy15524 668 DMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDW---------------- 731 (930)
Q Consensus 668 ~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~v~~~F~~~~~~vLv~T~~~~~GlDip~v~~---------------- 731 (930)
+.++.+++.|++. +..+..+||+ +|..++++|++|+.+|||||+++++|+|+| +.+
T Consensus 182 ~~~~~l~~~L~~~---~~~v~~lhg~----~r~~~~~~f~~g~~~vLVaT~v~e~GiDip-~~~VI~~g~~~~~v~d~~~ 253 (431)
T 2v6i_A 182 KQGAEIGTCLQKA---GKKVLYLNRK----TFESEYPKCKSEKWDFVITTDISEMGANFK-ADRVIDPRKTIKPILLDGR 253 (431)
T ss_dssp HHHHHHHHHHHHT---TCCEEEESTT----THHHHTTHHHHSCCSEEEECGGGGTSCCCC-CSEEEECCEEEEEEEETTE
T ss_pred HHHHHHHHHHHHc---CCeEEEeCCc----cHHHHHHhhcCCCCeEEEECchHHcCcccC-CcEEEecCccccceecccc
Confidence 9999999999886 7788899997 578899999999999999999999999999 544
Q ss_pred -EEEecCCCChhhHHhhhcccccCCC-CceEEEEe
Q psy15524 732 -IVQYTAPSSSTDYVHRVGRTARVGH-EGSSLLFL 764 (930)
Q Consensus 732 -VI~~~~p~s~~~y~qr~GRagR~g~-~g~~~~~~ 764 (930)
||+++.|.+..+|+||+||+||.|. .|.++++.
T Consensus 254 ~vi~~~~p~~~~~~~Qr~GR~GR~g~~~~~~~~~~ 288 (431)
T 2v6i_A 254 VSMQGPIAITPASAAQRRGRIGRNPEKLGDIYAYS 288 (431)
T ss_dssp EEEEEEEECCHHHHHHHHTTSSCCTTCCCCEEEEC
T ss_pred eeecccccCCHHHHHHhhhccCCCCCCCCeEEEEc
Confidence 6888999999999999999999986 45555555
|
| >3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.6e-34 Score=305.27 Aligned_cols=208 Identities=25% Similarity=0.441 Sum_probs=181.2
Q ss_pred cCCCCCCCCCCCCCHHHHHHHHhcCCCCCCCHHHHHhHHhhhcC--CcEEEEccCCCchhHHhhHHHHHHHHhhCcccCC
Q psy15524 386 LFAPTSYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDG--GDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISR 463 (930)
Q Consensus 386 ~~~~~~f~~l~~l~~~~~~~l~~~~~~~~~~~iQ~~~i~~il~~--~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~ 463 (930)
.....+|+++ +|++.+++.|.+ +||..||++|.++||.++.| +|++++||||||||++|++|+++.+.. .
T Consensus 88 ~~~~~~f~~l-~l~~~l~~~l~~-~g~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~------~ 159 (300)
T 3fmo_B 88 LYSVKSFEEL-RLKPQLLQGVYA-MGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEP------A 159 (300)
T ss_dssp CCCCCCSGGG-TCCHHHHHHHHH-TTCCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHHCCT------T
T ss_pred cCCcCCHhhc-CCCHHHHHHHHH-cCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHHHhhhc------c
Confidence 4455789999 999999999985 89999999999999999997 999999999999999999999988754 2
Q ss_pred CCCeeEEEEccCHHHHHHHHHHHHHhhccCCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhccCCcccccc
Q psy15524 464 KDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKV 543 (930)
Q Consensus 464 ~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l 543 (930)
..++++|||+|||+||.|+++.+..+.............||....... ..+++|+|+|||+|++++.+...+.++++
T Consensus 160 ~~~~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~IlV~TP~~l~~~l~~~~~~~l~~l 236 (300)
T 3fmo_B 160 NKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ---KISEQIVIGTPGTVLDWCSKLKFIDPKKI 236 (300)
T ss_dssp SCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTTC---CCCCSEEEECHHHHHHHHTTTCCCCGGGC
T ss_pred CCCceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhhh---cCCCCEEEECHHHHHHHHHhcCCCChhhc
Confidence 456789999999999999999999998876666777778876543221 45789999999999999987667788999
Q ss_pred eEEEEecchhhhh-cCcHHHHHHHHHHHhhcCccceEEEEccccCHHHHHHHhhhcCCCEEEEcc
Q psy15524 544 EHLVLDEADRILD-QGYERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAA 607 (930)
Q Consensus 544 ~~lVlDEah~l~~-~g~~~~l~~i~~~l~~~~~~~q~vl~SAT~~~~~~~l~~~~~~~~~~i~~~ 607 (930)
++|||||||++++ .||...+..|+..++ +.+|+++||||+++.+..++..++.+|..|.+.
T Consensus 237 ~~lVlDEad~l~~~~~~~~~~~~i~~~~~---~~~q~i~~SAT~~~~v~~~a~~~l~~p~~i~~~ 298 (300)
T 3fmo_B 237 KVFVLDEADVMIATQGHQDQSIRIQRMLP---RNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLK 298 (300)
T ss_dssp SEEEETTHHHHHHSTTHHHHHHHHHTTSC---TTCEEEEEESCCCHHHHHHHHHHSSSCEEEEEC
T ss_pred eEEEEeCHHHHhhccCcHHHHHHHHHhCC---CCCEEEEEeccCCHHHHHHHHHHCCCCeEEEec
Confidence 9999999999998 688888888776664 478999999999999999999999999998764
|
| >3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-33 Score=291.56 Aligned_cols=211 Identities=31% Similarity=0.502 Sum_probs=186.2
Q ss_pred CCCCCCCCCCHHHHHHHHhcCCCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeE
Q psy15524 390 TSYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYA 469 (930)
Q Consensus 390 ~~f~~l~~l~~~~~~~l~~~~~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~ 469 (930)
.+|+++ ++++.+.+.+.+ +||..|+|+|.++++.+++|+|++++||||||||++|++|++..+.... ...+..++++
T Consensus 29 ~~f~~~-~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~~~~g~~~l~~apTGsGKT~~~~l~~l~~l~~~~-~~~~~~~~~~ 105 (242)
T 3fe2_A 29 LNFYEA-NFPANVMDVIAR-QNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQP-FLERGDGPIC 105 (242)
T ss_dssp SSTTTT-TCCHHHHHHHHT-TTCCSCCHHHHHHHHHHHHTCCEEEEECTTSCHHHHHHHHHHHHHHTSC-CCCTTCCCSE
T ss_pred CCHhhc-CCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCCCCEEEECCCcCHHHHHHHHHHHHHHHhcc-ccccCCCCEE
Confidence 468888 899999999985 8999999999999999999999999999999999999999999987532 1223457889
Q ss_pred EEEccCHHHHHHHHHHHHHhhccCCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhccCCcccccceEEEEe
Q psy15524 470 VIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLD 549 (930)
Q Consensus 470 lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlD 549 (930)
||++||++|+.|+++.++++....+ .....++||.........+..+++|+|+|||+|.+++.+ ....+++++++|+|
T Consensus 106 lil~Pt~~L~~Q~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~-~~~~~~~~~~lViD 183 (242)
T 3fe2_A 106 LVLAPTRELAQQVQQVAAEYCRACR-LKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLEC-GKTNLRRTTYLVLD 183 (242)
T ss_dssp EEECSSHHHHHHHHHHHHHHHHHTT-CCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHH-TSCCCTTCCEEEET
T ss_pred EEEeCcHHHHHHHHHHHHHHHhhcC-ceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHc-CCCCcccccEEEEe
Confidence 9999999999999999999887654 456778899888888888888999999999999999876 44578999999999
Q ss_pred cchhhhhcCcHHHHHHHHHHHhhcCccceEEEEccccCHHHHHHHhhhcCCCEEEEccC
Q psy15524 550 EADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAAD 608 (930)
Q Consensus 550 Eah~l~~~g~~~~l~~i~~~l~~~~~~~q~vl~SAT~~~~~~~l~~~~~~~~~~i~~~~ 608 (930)
|||+++++||...+..+++.++ +.+|+++||||+++.+..++..++.+|+.|.+..
T Consensus 184 Eah~l~~~~~~~~~~~i~~~~~---~~~q~~~~SAT~~~~~~~~~~~~l~~~~~i~~~~ 239 (242)
T 3fe2_A 184 EADRMLDMGFEPQIRKIVDQIR---PDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGA 239 (242)
T ss_dssp THHHHHHTTCHHHHHHHHTTSC---SSCEEEEEESCCCHHHHHHHHHHCSSCEEEEECC
T ss_pred CHHHHhhhCcHHHHHHHHHhCC---ccceEEEEEeecCHHHHHHHHHHCCCCEEEEecC
Confidence 9999999999999998877664 4789999999999999999999999999998754
|
| >3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-32 Score=285.68 Aligned_cols=205 Identities=33% Similarity=0.571 Sum_probs=182.7
Q ss_pred CCCCCCCCCCHHHHHHHHhcCCCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeE
Q psy15524 390 TSYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYA 469 (930)
Q Consensus 390 ~~f~~l~~l~~~~~~~l~~~~~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~ 469 (930)
.+|+++ ++++.+.+.|.+ +||..|+++|.++++.+++|+|++++||||||||++|++|+++.+... ..+.++
T Consensus 43 ~~f~~l-~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~il~~l~~~------~~~~~~ 114 (249)
T 3ber_A 43 KTFKDL-GVTDVLCEACDQ-LGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLET------PQRLFA 114 (249)
T ss_dssp CCTGGG-TCCHHHHHHHHH-TTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHS------CCSSCE
T ss_pred CCHHHc-CCCHHHHHHHHH-cCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCCchhHhHHHHHHHHhcC------CCCceE
Confidence 569999 999999999974 899999999999999999999999999999999999999999988762 346789
Q ss_pred EEEccCHHHHHHHHHHHHHhhccCCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhccCCcccccceEEEEe
Q psy15524 470 VIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLD 549 (930)
Q Consensus 470 lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlD 549 (930)
||++||++|+.|+++.++++....+ .....+.||.....+...+..+++|+|+|||++.+++.+...+.+.+++++|+|
T Consensus 115 lil~Ptr~L~~q~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~l~~~~~lViD 193 (249)
T 3ber_A 115 LVLTPTRELAFQISEQFEALGSSIG-VQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMD 193 (249)
T ss_dssp EEECSSHHHHHHHHHHHHHHHGGGT-CCEEEECTTSCHHHHHHHHHTCCSEEEECHHHHHHHHHHSTTCCCTTCCEEEEC
T ss_pred EEEeCCHHHHHHHHHHHHHHhccCC-eeEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCcCccccCEEEEc
Confidence 9999999999999999999876544 356678888887777777788999999999999999887666678999999999
Q ss_pred cchhhhhcCcHHHHHHHHHHHhhcCccceEEEEccccCHHHHHHHhhhcCCCEEEEc
Q psy15524 550 EADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDA 606 (930)
Q Consensus 550 Eah~l~~~g~~~~l~~i~~~l~~~~~~~q~vl~SAT~~~~~~~l~~~~~~~~~~i~~ 606 (930)
|||++.+++|...+..++..++ +.+|+++||||+++.+.++++.++.+|..+.+
T Consensus 194 Eah~l~~~~~~~~l~~i~~~~~---~~~~~l~~SAT~~~~v~~~~~~~l~~p~~i~v 247 (249)
T 3ber_A 194 EADRILNMDFETEVDKILKVIP---RDRKTFLFSATMTKKVQKLQRAALKNPVKCAV 247 (249)
T ss_dssp SHHHHHHTTCHHHHHHHHHSSC---SSSEEEEEESSCCHHHHHHHHHHCSSCEEEEC
T ss_pred ChhhhhccChHHHHHHHHHhCC---CCCeEEEEeccCCHHHHHHHHHHCCCCEEEEe
Confidence 9999999999999888877664 37899999999999999999999999998865
|
| >3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-33 Score=330.97 Aligned_cols=323 Identities=17% Similarity=0.181 Sum_probs=187.6
Q ss_pred CCCCHHHHHhHHhhhc----C-CcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHH-HHH
Q psy15524 413 TQVTTVQQLSIQPILD----G-GDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTL-EIF 486 (930)
Q Consensus 413 ~~~~~iQ~~~i~~il~----~-~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~-~~~ 486 (930)
..++|+|.++++.++. + +++++++|||||||++++..+...+...........+.++|||+||++|+.|+. +.+
T Consensus 177 ~~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~~~~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~~~~~ 256 (590)
T 3h1t_A 177 YSPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQISWKLWSARWNRTGDYRKPRILFLADRNVLVDDPKDKTF 256 (590)
T ss_dssp --CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHHHHTTCCSSCSSSCCCEEEEEC-----------CC
T ss_pred CCchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHHHHHHHHhcccccccccCCCeEEEEeCCHHHHHHHHHHHH
Confidence 3799999999999886 4 569999999999999965444443332111111125788999999999999998 666
Q ss_pred HHhhccCCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhcc---CCcccccceEEEEecchhhhhcCcHHHH
Q psy15524 487 TKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHT---ETLKFSKVEHLVLDEADRILDQGYERDI 563 (930)
Q Consensus 487 ~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~---~~~~~~~l~~lVlDEah~l~~~g~~~~l 563 (930)
+.+.. ....+.++. ...+.+|+|+||++|..+.... ..+....+++||+||||++...+ ...+
T Consensus 257 ~~~~~-----~~~~~~~~~--------~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH~~~~~~-~~~~ 322 (590)
T 3h1t_A 257 TPFGD-----ARHKIEGGK--------VVKSREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECHRGSARD-NSNW 322 (590)
T ss_dssp TTTCS-----SEEECCC----------CCSSCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCCC----------C
T ss_pred Hhcch-----hhhhhhccC--------CCCCCcEEEEEhhhhccccccccccccCCCCccCEEEEECCccccccc-hHHH
Confidence 65432 122233221 2346899999999998775421 23445779999999999997643 2344
Q ss_pred HHHHHHHhhcCccceEEEEccccCHHHHHHHhhhcCCCEE------------------EEccCCCCcccCc-cc--e-ec
Q psy15524 564 AEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQ------------------IDAADSTDIHNTT-DS--L-VI 621 (930)
Q Consensus 564 ~~i~~~l~~~~~~~q~vl~SAT~~~~~~~l~~~~~~~~~~------------------i~~~~~~~~~~~~-~~--~-~~ 621 (930)
..++..++ ..++++||||+......-....+..++. +.+.......... .. . ..
T Consensus 323 ~~il~~~~----~~~~l~lTATP~~~~~~~~~~~f~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (590)
T 3h1t_A 323 REILEYFE----PAFQIGMTATPLREDNRDTYRYFGNPIYTYSLRQGIDDGFLAPYRVHRVISEVDAAGWRPSKGDVDRF 398 (590)
T ss_dssp HHHHHHST----TSEEEEEESSCSCTTTHHHHHHSCSCSEEECHHHHHHHTSSCCEEEEEEEETTCC-------------
T ss_pred HHHHHhCC----cceEEEeccccccccchhHHHHcCCceEecCHHHHhhCCccCCcEEEEeeeeeecccccccccccccc
Confidence 55555554 4689999999874322111112222211 1111000000000 00 0 00
Q ss_pred CCCceEEEEEcCc-------hhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcC-----CCceEEE
Q psy15524 622 PDSLKQHFIVTPP-------KLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLG-----ENIAFFK 689 (930)
Q Consensus 622 ~~~~~~~~~~~~~-------~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~-----~~~~~~~ 689 (930)
...+......... ..+...+...+....... ...+++||||+++++++.+++.|.+... .+-.+..
T Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~r~~~i~~~l~~~l~~~--~~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~ 476 (590)
T 3h1t_A 399 GREIPDGEYQTKDFERVIALKARTDAFAKHLTDFMKRT--DRFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVAR 476 (590)
T ss_dssp ----------CCSHHHHHHHHHTHHHHHHHHHHHHHHH--CTTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEE
T ss_pred ccccccccCCHHHhhhHhcChHHHHHHHHHHHHHHHhc--CCCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEE
Confidence 0000000000000 112233333333222211 2257999999999999999999987532 1223677
Q ss_pred ecCCCCHHHHHHHHHHhhcCCCc---EEEeccccccccCCCCccEEEEecCCCChhhHHhhhcccccCCC
Q psy15524 690 LHGSMSQSERTEVFKTFRSVKSG---VLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGH 756 (930)
Q Consensus 690 lhg~~~~~~R~~v~~~F~~~~~~---vLv~T~~~~~GlDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~ 756 (930)
+||++++ +|..++++|++|+.+ |||||+++++|+|+|++++||++++|.++..|+||+||+||.+.
T Consensus 477 i~g~~~~-~r~~~l~~F~~~~~~~~~ilvtt~~l~~GiDip~v~~Vi~~~~~~s~~~~~Q~iGR~~R~~~ 545 (590)
T 3h1t_A 477 VTSEEGK-IGKGHLSRFQELETSTPVILTTSQLLTTGVDAPTCKNVVLARVVNSMSEFKQIVGRGTRLRE 545 (590)
T ss_dssp CSSTTHH-HHHHHHHHHHCTTCCCCCEEEESSTTTTTCCCTTEEEEEEESCCCCHHHHHHHHTTSCCCBG
T ss_pred EeCCChH-HHHHHHHHHhCCCCCCCEEEEECChhhcCccchheeEEEEEecCCChHHHHHHHhhhcccCc
Confidence 8999864 799999999998866 89999999999999999999999999999999999999999875
|
| >3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-32 Score=286.16 Aligned_cols=208 Identities=31% Similarity=0.471 Sum_probs=172.7
Q ss_pred CCCCC-CCCCCHHHHHHHHhcCCCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCee
Q psy15524 390 TSYEE-FPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIY 468 (930)
Q Consensus 390 ~~f~~-l~~l~~~~~~~l~~~~~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~ 468 (930)
.+|++ + ++++.+.+.+.+ +||.+|+|+|.++++.+++|+|++++||||||||++|++|++..+...........+.+
T Consensus 19 ~~f~~~~-~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~~~~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~ 96 (228)
T 3iuy_A 19 CRFKDAF-QQYPDLLKSIIR-VGILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISREQRNGPG 96 (228)
T ss_dssp CSHHHHH-TTCHHHHHHHHH-HTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHC---------CCCS
T ss_pred hhHhhhh-ccCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhccchhhccCCCc
Confidence 45777 5 899999999985 79999999999999999999999999999999999999999998764322222346788
Q ss_pred EEEEccCHHHHHHHHHHHHHhhccCCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhccCCcccccceEEEE
Q psy15524 469 AVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVL 548 (930)
Q Consensus 469 ~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVl 548 (930)
+||++||++|+.|+++.+.++.. .......++||.........+.++++|+|+|||++.+++.. ....+++++++|+
T Consensus 97 ~lil~Pt~~L~~q~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~-~~~~~~~~~~lVi 173 (228)
T 3iuy_A 97 MLVLTPTRELALHVEAECSKYSY--KGLKSICIYGGRNRNGQIEDISKGVDIIIATPGRLNDLQMN-NSVNLRSITYLVI 173 (228)
T ss_dssp EEEECSSHHHHHHHHHHHHHHCC--TTCCEEEECC------CHHHHHSCCSEEEECHHHHHHHHHT-TCCCCTTCCEEEE
T ss_pred EEEEeCCHHHHHHHHHHHHHhcc--cCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHc-CCcCcccceEEEE
Confidence 99999999999999999999863 34556777888877777777888999999999999998766 4566889999999
Q ss_pred ecchhhhhcCcHHHHHHHHHHHhhcCccceEEEEccccCHHHHHHHhhhcCCCEEEE
Q psy15524 549 DEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQID 605 (930)
Q Consensus 549 DEah~l~~~g~~~~l~~i~~~l~~~~~~~q~vl~SAT~~~~~~~l~~~~~~~~~~i~ 605 (930)
||||++++++|...+..++..++ ++.|++++|||+++.+..++..++.+|..+.
T Consensus 174 DEah~~~~~~~~~~~~~i~~~~~---~~~~~l~~SAT~~~~~~~~~~~~l~~p~~i~ 227 (228)
T 3iuy_A 174 DEADKMLDMEFEPQIRKILLDVR---PDRQTVMTSATWPDTVRQLALSYLKDPMIVY 227 (228)
T ss_dssp CCHHHHHHTTCHHHHHHHHHHSC---SSCEEEEEESCCCHHHHHHHHTTCSSCEEEE
T ss_pred ECHHHHhccchHHHHHHHHHhCC---cCCeEEEEEeeCCHHHHHHHHHHCCCCEEEe
Confidence 99999999999999998887764 4789999999999999999999999998775
|
| >1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-32 Score=277.01 Aligned_cols=203 Identities=33% Similarity=0.547 Sum_probs=180.5
Q ss_pred CCCCCCCCCCHHHHHHHHhcCCCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeE
Q psy15524 390 TSYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYA 469 (930)
Q Consensus 390 ~~f~~l~~l~~~~~~~l~~~~~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~ 469 (930)
.+|+++ ++++.+.+.+.+ +||..|+|+|.++++.+++|+|+++.||||||||++|++|+++.+.. ...+.++
T Consensus 3 ~~f~~~-~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~------~~~~~~~ 74 (206)
T 1vec_A 3 NEFEDY-CLKRELLMGIFE-MGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDL------KKDNIQA 74 (206)
T ss_dssp SSGGGS-CCCHHHHHHHHT-TTCCSCCHHHHHHHHHHHTTCCEEEECCSSSTTHHHHHHHHHHHCCT------TSCSCCE
T ss_pred CChhhc-CCCHHHHHHHHH-CCCCCCCHHHHHHHHHHccCCCEEEECCCCCchHHHHHHHHHHHhcc------cCCCeeE
Confidence 469999 899999999984 89999999999999999999999999999999999999999987643 2356789
Q ss_pred EEEccCHHHHHHHHHHHHHhhccCCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhccCCcccccceEEEEe
Q psy15524 470 VIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLD 549 (930)
Q Consensus 470 lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlD 549 (930)
||++||++|+.|+++.+.++....+...+..+.||.....+...+..+++|+|+||+++.+.+.+ ....+.+++++|+|
T Consensus 75 lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~-~~~~~~~~~~lViD 153 (206)
T 1vec_A 75 MVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKK-GVAKVDHVQMIVLD 153 (206)
T ss_dssp EEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHT-TCSCCTTCCEEEEE
T ss_pred EEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHhcCCCCCEEEeCHHHHHHHHHc-CCcCcccCCEEEEE
Confidence 99999999999999999999877656677788899888777777778899999999999988876 44567899999999
Q ss_pred cchhhhhcCcHHHHHHHHHHHhhcCccceEEEEccccCHHHHHHHhhhcCCCEEE
Q psy15524 550 EADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQI 604 (930)
Q Consensus 550 Eah~l~~~g~~~~l~~i~~~l~~~~~~~q~vl~SAT~~~~~~~l~~~~~~~~~~i 604 (930)
|||++.+.+|...+..++..++. ..|++++|||+++.+.+++..++.+|..+
T Consensus 154 Eah~~~~~~~~~~l~~i~~~~~~---~~~~l~~SAT~~~~~~~~~~~~l~~p~~i 205 (206)
T 1vec_A 154 EADKLLSQDFVQIMEDIILTLPK---NRQILLYSATFPLSVQKFMNSHLEKPYEI 205 (206)
T ss_dssp THHHHTSTTTHHHHHHHHHHSCT---TCEEEEEESCCCHHHHHHHHHHCSSCEEE
T ss_pred ChHHhHhhCcHHHHHHHHHhCCc---cceEEEEEeeCCHHHHHHHHHHcCCCeEe
Confidence 99999999999999888877753 78999999999999999999999998765
|
| >3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-32 Score=288.56 Aligned_cols=209 Identities=37% Similarity=0.629 Sum_probs=179.3
Q ss_pred cCCCCCCCCCC-CCCHHHHHHHHhcCCCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCC
Q psy15524 386 LFAPTSYEEFP-GIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRK 464 (930)
Q Consensus 386 ~~~~~~f~~l~-~l~~~~~~~l~~~~~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~ 464 (930)
.+...+|++++ .+++.+++.+.+ +||..|+|+|.++++.++.|+|++++||||||||++|++|+++.+..... ...
T Consensus 48 ~~~~~~f~~l~~~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~--~~~ 124 (262)
T 3ly5_A 48 AFEDTSFASLCNLVNENTLKAIKE-MGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRF--MPR 124 (262)
T ss_dssp BSGGGCC-----CCCHHHHHHHHH-TTCCBCCHHHHHHHHHHHHTCCCEECCCTTSCHHHHHHHHHHHHHHHTTC--CGG
T ss_pred ccccCChhHhccccCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCCCcEEEEccCCCCchHHHHHHHHHHHHhccc--ccc
Confidence 34456788882 389999999985 89999999999999999999999999999999999999999998876321 123
Q ss_pred CCeeEEEEccCHHHHHHHHHHHHHhhccCCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhccCCcccccce
Q psy15524 465 DGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVE 544 (930)
Q Consensus 465 ~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~ 544 (930)
.+.++||++||++||.|+++.+++++...+ .....++||.....+...+..+++|+|+|||++.+++.....+.+++++
T Consensus 125 ~~~~~lil~Pt~~La~q~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~l~ 203 (262)
T 3ly5_A 125 NGTGVLILSPTRELAMQTFGVLKELMTHHV-HTYGLIMGGSNRSAEAQKLGNGINIIVATPGRLLDHMQNTPGFMYKNLQ 203 (262)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTCC-SCEEEECSSSCHHHHHHHHHHCCSEEEECHHHHHHHHHHCTTCCCTTCC
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHHhhcC-ceEEEEECCCCHHHHHHHhcCCCCEEEEcHHHHHHHHHccCCcccccCC
Confidence 477899999999999999999999987654 4567788888888888888888999999999999999876667789999
Q ss_pred EEEEecchhhhhcCcHHHHHHHHHHHhhcCccceEEEEccccCHHHHHHHhhhcCCC
Q psy15524 545 HLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNP 601 (930)
Q Consensus 545 ~lVlDEah~l~~~g~~~~l~~i~~~l~~~~~~~q~vl~SAT~~~~~~~l~~~~~~~~ 601 (930)
++|+||||+++++||...+..++..++. .+|+++||||+++.+.++++..++++
T Consensus 204 ~lViDEah~l~~~~~~~~l~~i~~~~~~---~~q~l~~SAT~~~~v~~~~~~~l~~~ 257 (262)
T 3ly5_A 204 CLVIDEADRILDVGFEEELKQIIKLLPT---RRQTMLFSATQTRKVEDLARISLKKE 257 (262)
T ss_dssp EEEECSHHHHHHTTCHHHHHHHHHHSCS---SSEEEEECSSCCHHHHHHHHHHCSSC
T ss_pred EEEEcChHHHhhhhHHHHHHHHHHhCCC---CCeEEEEEecCCHHHHHHHHHHcCCC
Confidence 9999999999999999999999887754 78999999999999999999888754
|
| >2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.6e-32 Score=307.08 Aligned_cols=250 Identities=30% Similarity=0.444 Sum_probs=207.6
Q ss_pred CCCccCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHH
Q psy15524 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKL 80 (930)
Q Consensus 1 ~g~~~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~ 80 (930)
+||..|||+|+++||.+++|+|++++||||||||++|++|+++.+...... ....++++|||+||++|+.|++++++++
T Consensus 74 ~g~~~pt~iQ~~ai~~i~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~-~~~~~~~~lil~PtreLa~Q~~~~~~~~ 152 (434)
T 2db3_A 74 SGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLEDPHE-LELGRPQVVIVSPTRELAIQIFNEARKF 152 (434)
T ss_dssp TTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCCC-CCTTCCSEEEECSSHHHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHhcCCCEEEECCCCCCchHHHHHHHHHHHHhcccc-cccCCccEEEEecCHHHHHHHHHHHHHH
Confidence 589999999999999999999999999999999999999999998764322 1234678999999999999999999999
Q ss_pred hhhcCCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCcHHHHHHHHHH
Q psy15524 81 CKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEI 160 (930)
Q Consensus 81 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~~~~~~~i~~~ 160 (930)
+...+ +.+..++||.....+...+..+++|+|+||++|.+++.+ ..+.+.++++||+||||+|++++|++++..++..
T Consensus 153 ~~~~~-~~~~~~~gg~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~-~~~~l~~~~~lVlDEah~~~~~gf~~~~~~i~~~ 230 (434)
T 2db3_A 153 AFESY-LKIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDR-TFITFEDTRFVVLDEADRMLDMGFSEDMRRIMTH 230 (434)
T ss_dssp TTTSS-CCCCEECTTSCHHHHHHHHTTCCSEEEECHHHHHHHHHT-TSCCCTTCCEEEEETHHHHTSTTTHHHHHHHHHC
T ss_pred hccCC-cEEEEEECCCCHHHHHHHhhcCCCEEEEChHHHHHHHHh-CCcccccCCeEEEccHhhhhccCcHHHHHHHHHh
Confidence 86544 677788999988888888888999999999999999876 5567899999999999999999999988887764
Q ss_pred HhhcCCCceEEEEEeecCCCccccccccccccccccchhhhhhhhhhhccchhhHHHHHHHHhhcCcCceEEEEecccch
Q psy15524 161 LKKQKPQFQSILLSATLTPATCWCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLTP 240 (930)
Q Consensus 161 l~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~de~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~sat~~~ 240 (930)
+.. . +.+|+++||||++.
T Consensus 231 ~~~-~-------------------------------------------------------------~~~q~l~~SAT~~~ 248 (434)
T 2db3_A 231 VTM-R-------------------------------------------------------------PEHQTLMFSATFPE 248 (434)
T ss_dssp TTS-C-------------------------------------------------------------SSCEEEEEESCCCH
T ss_pred cCC-C-------------------------------------------------------------CCceEEEEeccCCH
Confidence 421 1 12377777888878
Q ss_pred HHHHhhhccccCCeeeccCCcccccCCCcccccCCCceeEEEEcCcchhHHHHHHHHhhhccccccCCcceEEEEEeccc
Q psy15524 241 AVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQD 320 (930)
Q Consensus 241 ~~~~l~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~iVF~~s~~ 320 (930)
.+..++..++.++..+...... .....+.+.+..+....|...|..++.. . ..++||||++++
T Consensus 249 ~~~~~~~~~l~~~~~i~~~~~~---------~~~~~i~~~~~~~~~~~k~~~l~~~l~~-------~-~~~~lVF~~t~~ 311 (434)
T 2db3_A 249 EIQRMAGEFLKNYVFVAIGIVG---------GACSDVKQTIYEVNKYAKRSKLIEILSE-------Q-ADGTIVFVETKR 311 (434)
T ss_dssp HHHHHHHTTCSSCEEEEESSTT---------CCCTTEEEEEEECCGGGHHHHHHHHHHH-------C-CTTEEEECSSHH
T ss_pred HHHHHHHHhccCCEEEEecccc---------ccccccceEEEEeCcHHHHHHHHHHHHh-------C-CCCEEEEEeCcH
Confidence 8888888888888777654432 2245688888888888899999988843 2 234999999999
Q ss_pred chhhhHHHHhhh
Q psy15524 321 MADYHTELLSTK 332 (930)
Q Consensus 321 ~~~~l~~~L~~~ 332 (930)
.|+.++..|+..
T Consensus 312 ~a~~l~~~L~~~ 323 (434)
T 2db3_A 312 GADFLASFLSEK 323 (434)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHhC
Confidence 999999999864
|
| >2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-32 Score=281.27 Aligned_cols=204 Identities=23% Similarity=0.332 Sum_probs=178.2
Q ss_pred CCCCCCCCCCHHHHHHHHhcCCCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeE
Q psy15524 390 TSYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYA 469 (930)
Q Consensus 390 ~~f~~l~~l~~~~~~~l~~~~~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~ 469 (930)
.+|+++ ++++.+.+.|.+ +||..|+++|.++++.+++|+|+++++|||||||++|++|+++.+.. ...+.++
T Consensus 24 ~~f~~l-~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~------~~~~~~~ 95 (230)
T 2oxc_A 24 ADFESL-LLSRPVLEGLRA-AGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDSLVL------ENLSTQI 95 (230)
T ss_dssp CCGGGG-TCCHHHHHHHHH-TTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCT------TSCSCCE
T ss_pred CCHhhc-CCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHh------cCCCceE
Confidence 579999 899999999975 89999999999999999999999999999999999999999988754 2346789
Q ss_pred EEEccCHHHHHHHHHHHHHhhccCCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhccCCcccccceEEEEe
Q psy15524 470 VIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLD 549 (930)
Q Consensus 470 lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlD 549 (930)
||++||++|+.|+++.++++........+..+.||.....+... ..+++|+|+|||++.+++.. ..+.+.+++++|+|
T Consensus 96 lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~Iiv~Tp~~l~~~~~~-~~~~~~~~~~lViD 173 (230)
T 2oxc_A 96 LILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTR-LKKCHIAVGSPGRIKQLIEL-DYLNPGSIRLFILD 173 (230)
T ss_dssp EEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHH-TTSCSEEEECHHHHHHHHHT-TSSCGGGCCEEEES
T ss_pred EEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHh-ccCCCEEEECHHHHHHHHhc-CCcccccCCEEEeC
Confidence 99999999999999999998876655667778888776555443 35799999999999998875 45667899999999
Q ss_pred cchhhhhcC-cHHHHHHHHHHHhhcCccceEEEEccccCHHHHHHHhhhcCCCEEEEc
Q psy15524 550 EADRILDQG-YERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDA 606 (930)
Q Consensus 550 Eah~l~~~g-~~~~l~~i~~~l~~~~~~~q~vl~SAT~~~~~~~l~~~~~~~~~~i~~ 606 (930)
|||+++++| |...+..++..++. ..|++++|||+++.+.+++..++.+|..+.+
T Consensus 174 Eah~~~~~~~~~~~~~~i~~~~~~---~~~~l~lSAT~~~~~~~~~~~~~~~p~~i~~ 228 (230)
T 2oxc_A 174 EADKLLEEGSFQEQINWIYSSLPA---SKQMLAVSATYPEFLANALTKYMRDPTFVRL 228 (230)
T ss_dssp SHHHHHSTTSSHHHHHHHHHHSCS---SCEEEEEESCCCHHHHHHHTTTCSSCEEECC
T ss_pred CchHhhcCcchHHHHHHHHHhCCC---CCeEEEEEeccCHHHHHHHHHHcCCCeEEEc
Confidence 999999998 99999888877753 7899999999999999999999999988764
|
| >2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-31 Score=303.52 Aligned_cols=139 Identities=17% Similarity=0.212 Sum_probs=116.2
Q ss_pred HHHHHHhcCCCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHH
Q psy15524 402 MKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQ 481 (930)
Q Consensus 402 ~~~~l~~~~~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q 481 (930)
+.++-...+|+ .|+++|..++|.+++|+ +++|+||||||++|.+|++..... |..++|++||++||.|
T Consensus 68 vREAs~R~lG~-~Pt~VQ~~~ip~LlqG~--IaeakTGeGKTLvf~Lp~~L~aL~---------G~qv~VvTPTreLA~Q 135 (997)
T 2ipc_A 68 TRESAKRYLGM-RHFDVQLIGGAVLHEGK--IAEMKTGEGKTLVATLAVALNALT---------GKGVHVVTVNDYLARR 135 (997)
T ss_dssp HHHHHHHHTCC-CCCHHHHHHHHHHHTTS--EEECCSTHHHHHHHHHHHHHHHTT---------CSCCEEEESSHHHHHH
T ss_pred HHHHHHHHhCC-CCcHHHHhhcccccCCc--eeeccCCCchHHHHHHHHHHHHHh---------CCCEEEEeCCHHHHHH
Confidence 34455556899 99999999999999998 999999999999999999755432 5679999999999999
Q ss_pred HHHHHHHhhccCCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhH-HHhhhccC-----Ccccc---cceEEEEecch
Q psy15524 482 TLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRL-LDHCKHTE-----TLKFS---KVEHLVLDEAD 552 (930)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl-~~~l~~~~-----~~~~~---~l~~lVlDEah 552 (930)
.++.+..++..++ +.+++++||.+. +.++...+++|+|+|||+| .++++..- .+.++ ++.++|+||||
T Consensus 136 dae~m~~l~~~lG-Lsv~~i~Gg~~~--~~r~~ay~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~lIIDEaD 212 (997)
T 2ipc_A 136 DAEWMGPVYRGLG-LSVGVIQHASTP--AERRKAYLADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYAIIDEVD 212 (997)
T ss_dssp HHHHHHHHHHTTT-CCEEECCTTCCH--HHHHHHHTSSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCEEEETTHH
T ss_pred HHHHHHHHHHhcC-CeEEEEeCCCCH--HHHHHHcCCCEEEECchhhhhHHHHHhhhcchhhcccccCCCcceEEEechH
Confidence 9999999998765 567788998764 3344556899999999999 88887642 34577 89999999999
Q ss_pred hhh
Q psy15524 553 RIL 555 (930)
Q Consensus 553 ~l~ 555 (930)
+++
T Consensus 213 smL 215 (997)
T 2ipc_A 213 SIL 215 (997)
T ss_dssp HHT
T ss_pred HHH
Confidence 987
|
| >1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-32 Score=281.26 Aligned_cols=207 Identities=29% Similarity=0.487 Sum_probs=178.3
Q ss_pred CCCCCCCCCCHHHHHHHHhcCCCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeE
Q psy15524 390 TSYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYA 469 (930)
Q Consensus 390 ~~f~~l~~l~~~~~~~l~~~~~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~ 469 (930)
.+|+++ ++++.+.+.+.+ +||..|+++|.++++.+++|+|++++||||||||++|++|+++.+.. ...+.++
T Consensus 4 ~~f~~~-~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~------~~~~~~~ 75 (219)
T 1q0u_A 4 TQFTRF-PFQPFIIEAIKT-LRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKIKP------ERAEVQA 75 (219)
T ss_dssp CCGGGS-CCCHHHHHHHHH-TTCCSCCHHHHHHHHHHHHTCCEEEECCSSHHHHHHHHHHHHHHCCT------TSCSCCE
T ss_pred CCHhhC-CCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHh------CcCCceE
Confidence 569999 899999999975 89999999999999999999999999999999999999999988754 2346789
Q ss_pred EEEccCHHHHHHHHHHHHHhhccCC---CcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhccCCcccccceEE
Q psy15524 470 VIILPTRELALQTLEIFTKLCKSFT---WIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHL 546 (930)
Q Consensus 470 lil~PtreLa~Q~~~~~~~~~~~~~---~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~l 546 (930)
||++||++|+.|+++.+.++..... ......+.||.........+..+++|+|+|||++.+++.+ ....+.+++++
T Consensus 76 lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~-~~~~~~~~~~l 154 (219)
T 1q0u_A 76 VITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIRE-QALDVHTAHIL 154 (219)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTCCCSSCCSEEEECHHHHHHHHHT-TCCCGGGCCEE
T ss_pred EEEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHHHcCCCCCEEEeCHHHHHHHHHc-CCCCcCcceEE
Confidence 9999999999999999999886552 3456677888765554444456789999999999998876 45668899999
Q ss_pred EEecchhhhhcCcHHHHHHHHHHHhhcCccceEEEEccccCHHHHHHHhhhcCCCEEEEccC
Q psy15524 547 VLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAAD 608 (930)
Q Consensus 547 VlDEah~l~~~g~~~~l~~i~~~l~~~~~~~q~vl~SAT~~~~~~~l~~~~~~~~~~i~~~~ 608 (930)
|+||||++.+++|...+..++..++ +..|++++|||+++.+.++++.++.+|..+.+..
T Consensus 155 ViDEah~~~~~~~~~~l~~i~~~~~---~~~~~l~~SAT~~~~~~~~~~~~~~~p~~~~~~~ 213 (219)
T 1q0u_A 155 VVDEADLMLDMGFITDVDQIAARMP---KDLQMLVFSATIPEKLKPFLKKYMENPTFVHVLE 213 (219)
T ss_dssp EECSHHHHHHTTCHHHHHHHHHTSC---TTCEEEEEESCCCGGGHHHHHHHCSSCEEEECC-
T ss_pred EEcCchHHhhhChHHHHHHHHHhCC---cccEEEEEecCCCHHHHHHHHHHcCCCeEEEeec
Confidence 9999999999999988888877664 3789999999999999999999999999887643
|
| >1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=99.98 E-value=9.7e-32 Score=283.51 Aligned_cols=216 Identities=32% Similarity=0.465 Sum_probs=182.6
Q ss_pred CCCCCCCCCCHHHHHHHHhcCCCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcc---cCCCCC
Q psy15524 390 TSYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPK---ISRKDG 466 (930)
Q Consensus 390 ~~f~~l~~l~~~~~~~l~~~~~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~---~~~~~~ 466 (930)
.+|+++ ++++.+.++|. .+||..|+|+|.++++.+++|+|++++||||||||++|++|+++.+...... .....+
T Consensus 23 ~~f~~l-~l~~~l~~~l~-~~g~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~ 100 (253)
T 1wrb_A 23 ENFDEL-KLDPTIRNNIL-LASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAY 100 (253)
T ss_dssp CSSGGG-SCCCSTTTTTT-TTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCBC
T ss_pred CCHhhC-CCCHHHHHHHH-HCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhhccccccccccCC
Confidence 469999 89999999997 5899999999999999999999999999999999999999999988753211 112345
Q ss_pred eeEEEEccCHHHHHHHHHHHHHhhccCCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhccCCcccccceEE
Q psy15524 467 IYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHL 546 (930)
Q Consensus 467 ~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~l 546 (930)
+++||++||++|+.|+++.+.++....+ .....+.||.....+...+..+++|+|+||++|.+++.. ....+++++++
T Consensus 101 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~-~~~~~~~~~~l 178 (253)
T 1wrb_A 101 PKCLILAPTRELAIQILSESQKFSLNTP-LRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEK-NKISLEFCKYI 178 (253)
T ss_dssp CSEEEECSSHHHHHHHHHHHHHHHTTSS-CCEEEECSSSCSHHHHHHHSSCCSEEEECHHHHHHHHHT-TSBCCTTCCEE
T ss_pred ceEEEEECCHHHHHHHHHHHHHHhccCC-ceEEEEECCCCHHHHHHHhCCCCCEEEECHHHHHHHHHc-CCCChhhCCEE
Confidence 7899999999999999999999876543 455677888888877778888899999999999999876 44568899999
Q ss_pred EEecchhhhhcCcHHHHHHHHHHHhhc-CccceEEEEccccCHHHHHHHhhhcCCCEEEEccCC
Q psy15524 547 VLDEADRILDQGYERDIAEFLEILKKQ-KPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADS 609 (930)
Q Consensus 547 VlDEah~l~~~g~~~~l~~i~~~l~~~-~~~~q~vl~SAT~~~~~~~l~~~~~~~~~~i~~~~~ 609 (930)
|+||||++++++|...+..++..+... ....|+++||||+++.+.++++.++.+|..+.+...
T Consensus 179 ViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~ 242 (253)
T 1wrb_A 179 VLDEADRMLDMGFEPQIRKIIEESNMPSGINRQTLMFSATFPKEIQKLAADFLYNYIFMTVGRV 242 (253)
T ss_dssp EEETHHHHHHTTCHHHHHHHHHSSCCCCGGGCEEEEEESSCCHHHHHHHHHHCSSCEEEEEC--
T ss_pred EEeCHHHHHhCchHHHHHHHHhhccCCCCCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEECCC
Confidence 999999999999999999888754321 126799999999999999999999999999877543
|
| >2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.98 E-value=2.1e-31 Score=277.90 Aligned_cols=209 Identities=40% Similarity=0.604 Sum_probs=179.1
Q ss_pred CCCCCCCCCCHHHHHHHHhcCCCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeE
Q psy15524 390 TSYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYA 469 (930)
Q Consensus 390 ~~f~~l~~l~~~~~~~l~~~~~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~ 469 (930)
.+|+++ ++++.+.+.|.+ +||..|+++|.++++.+++|+|++++||||||||++|++|+++.+..... ....+.++
T Consensus 25 ~~f~~~-~l~~~l~~~l~~-~~~~~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~--~~~~~~~~ 100 (236)
T 2pl3_A 25 TRFSDF-PLSKKTLKGLQE-AQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQW--TSTDGLGV 100 (236)
T ss_dssp SBGGGS-CCCHHHHHHHHH-TTCCBCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHTTC--CGGGCCCE
T ss_pred CCHhhc-CCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHHHHHHHHHHHhhcc--cccCCceE
Confidence 469999 899999999985 89999999999999999999999999999999999999999998875321 12357789
Q ss_pred EEEccCHHHHHHHHHHHHHhhccCCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhccCCcccccceEEEEe
Q psy15524 470 VIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLD 549 (930)
Q Consensus 470 lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlD 549 (930)
||++||++|+.|+++.+++++...+ ..+..++||.....+...+ .+++|+|+|||++.+++.....+.+.+++++|+|
T Consensus 101 lil~Pt~~L~~q~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~-~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~lViD 178 (236)
T 2pl3_A 101 LIISPTRELAYQTFEVLRKVGKNHD-FSAGLIIGGKDLKHEAERI-NNINILVCTPGRLLQHMDETVSFHATDLQMLVLD 178 (236)
T ss_dssp EEECSSHHHHHHHHHHHHHHTTTSS-CCEEEECCC--CHHHHHHH-TTCSEEEECHHHHHHHHHHCSSCCCTTCCEEEET
T ss_pred EEEeCCHHHHHHHHHHHHHHhCCCC-eeEEEEECCCCHHHHHHhC-CCCCEEEECHHHHHHHHHhcCCcccccccEEEEe
Confidence 9999999999999999999876543 4566778887766555544 5799999999999998877555678899999999
Q ss_pred cchhhhhcCcHHHHHHHHHHHhhcCccceEEEEccccCHHHHHHHhhhcCCCEEEEcc
Q psy15524 550 EADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAA 607 (930)
Q Consensus 550 Eah~l~~~g~~~~l~~i~~~l~~~~~~~q~vl~SAT~~~~~~~l~~~~~~~~~~i~~~ 607 (930)
|||++.+++|...+..++..++ +.+|++++|||+++.+.++++.++.+|..+.+.
T Consensus 179 Eah~~~~~~~~~~~~~i~~~~~---~~~~~l~~SAT~~~~~~~~~~~~~~~p~~i~~~ 233 (236)
T 2pl3_A 179 EADRILDMGFADTMNAVIENLP---KKRQTLLFSATQTKSVKDLARLSLKNPEYVWVH 233 (236)
T ss_dssp THHHHHHTTTHHHHHHHHHTSC---TTSEEEEEESSCCHHHHHHHHHSCSSCEEEECC
T ss_pred ChHHHhcCCcHHHHHHHHHhCC---CCCeEEEEEeeCCHHHHHHHHHhCCCCEEEEeC
Confidence 9999999999998888877765 378999999999999999999999999988764
|
| >3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=1.1e-31 Score=279.75 Aligned_cols=205 Identities=28% Similarity=0.477 Sum_probs=168.2
Q ss_pred CCCCCCCCCCHHHHHHHHhcCCCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeE
Q psy15524 390 TSYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYA 469 (930)
Q Consensus 390 ~~f~~l~~l~~~~~~~l~~~~~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~ 469 (930)
.+|+++ ++++.+.+.+.+ +||..|+++|.++++.+++|+|++++||||||||++|++|+++.+.. ...+.++
T Consensus 30 ~~f~~l-~l~~~l~~~l~~-~g~~~~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~~l~~l~~l~~------~~~~~~~ 101 (237)
T 3bor_A 30 DNFDDM-NLKESLLRGIYA-YGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEI------EFKETQA 101 (237)
T ss_dssp CSGGGS-CCCHHHHHHHHH-HTCCSCCHHHHHHHHHHHTTCCEEECCCSSHHHHHHHHHHHHHHCCT------TSCSCCE
T ss_pred CChhhc-CCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHh------cCCCceE
Confidence 569999 899999999974 89999999999999999999999999999999999999999988753 2346789
Q ss_pred EEEccCHHHHHHHHHHHHHhhccCCCcceEEEeCCCchHHHHHHHhcC-CcEEEECchhHHHhhhccCCcccccceEEEE
Q psy15524 470 VIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKG-ISILVATPGRLLDHCKHTETLKFSKVEHLVL 548 (930)
Q Consensus 470 lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~-~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVl 548 (930)
||++||++|+.|+++.+++++...+ .....+.||.....+...+..+ ++|+|+|||++.+++.+ ....+.+++++|+
T Consensus 102 lil~Pt~~L~~q~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~l~~~~~~Ilv~Tp~~l~~~l~~-~~~~~~~~~~lVi 179 (237)
T 3bor_A 102 LVLAPTRELAQQIQKVILALGDYMG-ATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNR-RYLSPKWIKMFVL 179 (237)
T ss_dssp EEECSSHHHHHHHHHHHHHHTTTTT-CCEEEECC-------------CCCSEEEECHHHHHHHHHT-TSSCSTTCCEEEE
T ss_pred EEEECcHHHHHHHHHHHHHHhhhcC-ceEEEEECCCchHHHHHHHhcCCCCEEEECHHHHHHHHHh-CCcCcccCcEEEE
Confidence 9999999999999999999876544 3456677887766666666555 89999999999998876 4456788999999
Q ss_pred ecchhhhhcCcHHHHHHHHHHHhhcCccceEEEEccccCHHHHHHHhhhcCCCEEEEcc
Q psy15524 549 DEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAA 607 (930)
Q Consensus 549 DEah~l~~~g~~~~l~~i~~~l~~~~~~~q~vl~SAT~~~~~~~l~~~~~~~~~~i~~~ 607 (930)
||||++++++|...+..++..++ +..|++++|||+++.+.+++..++.+|..+.+.
T Consensus 180 DEah~~~~~~~~~~l~~i~~~~~---~~~~~i~~SAT~~~~~~~~~~~~l~~p~~i~v~ 235 (237)
T 3bor_A 180 DEADEMLSRGFKDQIYEIFQKLN---TSIQVVLLSATMPTDVLEVTKKFMRDPIRILVK 235 (237)
T ss_dssp ESHHHHHHTTCHHHHHHHHHHSC---TTCEEEEECSSCCHHHHHHHHHHCSSCEEEC--
T ss_pred CCchHhhccCcHHHHHHHHHhCC---CCCeEEEEEEecCHHHHHHHHHHCCCCEEEEec
Confidence 99999999999988888877764 478999999999999999999999999888653
|
| >2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A | Back alignment and structure |
|---|
Probab=99.97 E-value=3.9e-31 Score=270.05 Aligned_cols=204 Identities=34% Similarity=0.555 Sum_probs=178.9
Q ss_pred CCCCCCCCCHHHHHHHHhcCCCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEE
Q psy15524 391 SYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAV 470 (930)
Q Consensus 391 ~f~~l~~l~~~~~~~l~~~~~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~l 470 (930)
+|+++ ++++.+.+.+.+ +||..|+|+|.++++.+++|+|+++.+|||||||++|++|+++.+.... ....+.++|
T Consensus 2 ~f~~~-~l~~~l~~~l~~-~~~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~l~~~~---~~~~~~~~l 76 (207)
T 2gxq_A 2 EFKDF-PLKPEILEALHG-RGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAERLAPSQ---ERGRKPRAL 76 (207)
T ss_dssp CGGGS-CCCHHHHHHHHH-TTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCC---CTTCCCSEE
T ss_pred Chhhc-CCCHHHHHHHHH-cCCCCCCHHHHHHHHHHcCCCCEEEECCCCChHHHHHHHHHHHHHhhcc---ccCCCCcEE
Confidence 58999 899999999985 8999999999999999999999999999999999999999998875421 124578899
Q ss_pred EEccCHHHHHHHHHHHHHhhccCCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhccCCcccccceEEEEec
Q psy15524 471 IILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDE 550 (930)
Q Consensus 471 il~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlDE 550 (930)
|++||++|+.|+++.+.+++.. .....+.||.........+..+++|+|+||+++.+++.. ....+.+++++|+||
T Consensus 77 il~P~~~L~~q~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~-~~~~~~~~~~iViDE 152 (207)
T 2gxq_A 77 VLTPTRELALQVASELTAVAPH---LKVVAVYGGTGYGKQKEALLRGADAVVATPGRALDYLRQ-GVLDLSRVEVAVLDE 152 (207)
T ss_dssp EECSSHHHHHHHHHHHHHHCTT---SCEEEECSSSCSHHHHHHHHHCCSEEEECHHHHHHHHHH-TSSCCTTCSEEEEES
T ss_pred EEECCHHHHHHHHHHHHHHhhc---ceEEEEECCCChHHHHHHhhCCCCEEEECHHHHHHHHHc-CCcchhhceEEEEEC
Confidence 9999999999999999998754 345677888887777777778999999999999998876 456688999999999
Q ss_pred chhhhhcCcHHHHHHHHHHHhhcCccceEEEEccccCHHHHHHHhhhcCCCEEEEc
Q psy15524 551 ADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDA 606 (930)
Q Consensus 551 ah~l~~~g~~~~l~~i~~~l~~~~~~~q~vl~SAT~~~~~~~l~~~~~~~~~~i~~ 606 (930)
||++.+++|...+..++..++ +..|++++|||+++.+.++++.++.+|..+.+
T Consensus 153 ah~~~~~~~~~~~~~i~~~~~---~~~~~i~~SAT~~~~~~~~~~~~~~~p~~i~~ 205 (207)
T 2gxq_A 153 ADEMLSMGFEEEVEALLSATP---PSRQTLLFSATLPSWAKRLAERYMKNPVLINV 205 (207)
T ss_dssp HHHHHHTTCHHHHHHHHHTSC---TTSEEEEECSSCCHHHHHHHHHHCSSCEEEEC
T ss_pred hhHhhccchHHHHHHHHHhCC---ccCeEEEEEEecCHHHHHHHHHHcCCCeEEEc
Confidence 999999999998888876654 47899999999999999999999999988765
|
| >1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=99.97 E-value=8.1e-31 Score=270.33 Aligned_cols=204 Identities=25% Similarity=0.480 Sum_probs=175.5
Q ss_pred CCCCCCCCCCHHHHHHHHhcCCCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeE
Q psy15524 390 TSYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYA 469 (930)
Q Consensus 390 ~~f~~l~~l~~~~~~~l~~~~~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~ 469 (930)
.+|+++ ++++.+.+.|.+ +||..|+|+|.++++.+++|+|+++++|||+|||++|++|+++.+.. ...+.++
T Consensus 14 ~~f~~~-~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~~~~------~~~~~~~ 85 (220)
T 1t6n_A 14 SGFRDF-LLKPELLRAIVD-CGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEP------VTGQVSV 85 (220)
T ss_dssp CCSTTS-CCCHHHHHHHHH-TTCCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCC------CTTCCCE
T ss_pred CCHhhc-CCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHHHhhhc------cCCCEEE
Confidence 469999 999999999985 89999999999999999999999999999999999999999987643 1345689
Q ss_pred EEEccCHHHHHHHHHHHHHhhccCCCcceEEEeCCCchHHHHHHHhc-CCcEEEECchhHHHhhhccCCcccccceEEEE
Q psy15524 470 VIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRK-GISILVATPGRLLDHCKHTETLKFSKVEHLVL 548 (930)
Q Consensus 470 lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~-~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVl 548 (930)
||++||++|+.|+++.++++....+...+..+.||.........+.. .++|+|+||+++.+++.+ ....+.+++++|+
T Consensus 86 lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~-~~~~~~~~~~lVi 164 (220)
T 1t6n_A 86 LVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARN-KSLNLKHIKHFIL 164 (220)
T ss_dssp EEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHT-TSSCCTTCCEEEE
T ss_pred EEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHHHhcCCCCEEEeCHHHHHHHHHh-CCCCcccCCEEEE
Confidence 99999999999999999999876655677788888877666665554 479999999999998876 4556889999999
Q ss_pred ecchhhhh-cCcHHHHHHHHHHHhhcCccceEEEEccccCHHHHHHHhhhcCCCEEEE
Q psy15524 549 DEADRILD-QGYERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQID 605 (930)
Q Consensus 549 DEah~l~~-~g~~~~l~~i~~~l~~~~~~~q~vl~SAT~~~~~~~l~~~~~~~~~~i~ 605 (930)
||||++++ .+|...+..++..++ ...|++++|||+++.+.++++.++.+|..+.
T Consensus 165 DEah~~~~~~~~~~~~~~i~~~~~---~~~~~i~~SAT~~~~~~~~~~~~~~~p~~i~ 219 (220)
T 1t6n_A 165 DECDKMLEQLDMRRDVQEIFRMTP---HEKQVMMFSATLSKEIRPVCRKFMQDPMEIF 219 (220)
T ss_dssp ESHHHHHSSHHHHHHHHHHHHTSC---SSSEEEEEESCCCTTTHHHHHTTCSSCEEEE
T ss_pred cCHHHHhcccCcHHHHHHHHHhCC---CcCeEEEEEeecCHHHHHHHHHHcCCCeEEe
Confidence 99999987 577777777765543 4789999999999999999999999998775
|
| >1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.5e-30 Score=269.28 Aligned_cols=205 Identities=28% Similarity=0.511 Sum_probs=169.1
Q ss_pred CCCCCCCCCCHHHHHHHHhcCCCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeE
Q psy15524 390 TSYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYA 469 (930)
Q Consensus 390 ~~f~~l~~l~~~~~~~l~~~~~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~ 469 (930)
.+|+++ ++++.+.+.+.+ +||..|+|+|.++++.+++|+|+++.+|||||||++|++|+++.+.. ...+.++
T Consensus 14 ~~f~~l-~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~~~~~l~~l~~------~~~~~~~ 85 (224)
T 1qde_A 14 YKFDDM-ELDENLLRGVFG-YGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDT------SVKAPQA 85 (224)
T ss_dssp CCGGGG-TCCHHHHHHHHH-HTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCT------TCCSCCE
T ss_pred CChhhc-CCCHHHHHHHHH-CCCCCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHhc------cCCCceE
Confidence 469999 899999999985 79999999999999999999999999999999999999999988754 2346789
Q ss_pred EEEccCHHHHHHHHHHHHHhhccCCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhccCCcccccceEEEEe
Q psy15524 470 VIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLD 549 (930)
Q Consensus 470 lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlD 549 (930)
||++||++|+.|+++.+.++....+ .....+.||.........+ ..++|+|+||+++.+++.+ ....+.+++++|+|
T Consensus 86 lil~Pt~~L~~q~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~-~~~~iiv~Tp~~l~~~~~~-~~~~~~~~~~iViD 162 (224)
T 1qde_A 86 LMLAPTRELALQIQKVVMALAFHMD-IKVHACIGGTSFVEDAEGL-RDAQIVVGTPGRVFDNIQR-RRFRTDKIKMFILD 162 (224)
T ss_dssp EEECSSHHHHHHHHHHHHHHTTTSC-CCEEEECC----------C-TTCSEEEECHHHHHHHHHT-TSSCCTTCCEEEEE
T ss_pred EEEECCHHHHHHHHHHHHHHhcccC-ceEEEEeCCcchHHHHhcC-CCCCEEEECHHHHHHHHHh-CCcchhhCcEEEEc
Confidence 9999999999999999999876543 4456677776655444433 3489999999999988876 45668899999999
Q ss_pred cchhhhhcCcHHHHHHHHHHHhhcCccceEEEEccccCHHHHHHHhhhcCCCEEEEccC
Q psy15524 550 EADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAAD 608 (930)
Q Consensus 550 Eah~l~~~g~~~~l~~i~~~l~~~~~~~q~vl~SAT~~~~~~~l~~~~~~~~~~i~~~~ 608 (930)
|||++.+++|...+..++..++ +..|++++|||+++.+.++++.++.+|..+.+..
T Consensus 163 Eah~~~~~~~~~~l~~i~~~~~---~~~~~i~lSAT~~~~~~~~~~~~~~~p~~i~~~~ 218 (224)
T 1qde_A 163 EADEMLSSGFKEQIYQIFTLLP---PTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKK 218 (224)
T ss_dssp THHHHHHTTCHHHHHHHHHHSC---TTCEEEEEESSCCHHHHHHHHHHCSSCEEEC---
T ss_pred ChhHHhhhhhHHHHHHHHHhCC---ccCeEEEEEeecCHHHHHHHHHHCCCCEEEEecC
Confidence 9999999999998888877764 4789999999999999999999999999887643
|
| >3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.2e-30 Score=318.91 Aligned_cols=329 Identities=18% Similarity=0.176 Sum_probs=220.7
Q ss_pred CCCCHHHHHhHHhhhcC--CcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHHHHhh
Q psy15524 413 TQVTTVQQLSIQPILDG--GDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLC 490 (930)
Q Consensus 413 ~~~~~iQ~~~i~~il~~--~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~ 490 (930)
..|+|+|.+++..++.. .+++++++||+|||++++..+...+.. +...++|||||+ .|+.||.+.+.+.+
T Consensus 152 ~~LrpyQ~eav~~~l~~~~~~~LLad~tGlGKTi~Ai~~i~~l~~~-------g~~~rvLIVvP~-sLl~Qw~~E~~~~f 223 (968)
T 3dmq_A 152 TSLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLS-------GAAERVLIIVPE-TLQHQWLVEMLRRF 223 (968)
T ss_dssp SCCCHHHHHHHHHHHHSSSCEEEECCCTTSCHHHHHHHHHHHHHHT-------SSCCCEEEECCT-TTHHHHHHHHHHHS
T ss_pred CCCcHHHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHHh-------CCCCeEEEEeCH-HHHHHHHHHHHHHh
Confidence 47899999999988864 479999999999999988777766643 334579999999 99999999997766
Q ss_pred ccCCCcceEEEeCCCchHHHHH---HHhcCCcEEEECchhHHHhhhccCCcccccceEEEEecchhhhhcCcH-HHHHHH
Q psy15524 491 KSFTWIVPSWLTGGEKMKSEKA---RIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYE-RDIAEF 566 (930)
Q Consensus 491 ~~~~~~~~~~~~gg~~~~~~~~---~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~l~~~g~~-~~l~~i 566 (930)
. .....+ ++........ ......+|+|+|++.+.........+...++++||+||||++.+.+.. ......
T Consensus 224 ~----l~v~v~-~~~~~~~~~~~~~~~~~~~dIvI~T~~~L~~~~~~~~~l~~~~~dlVIvDEAH~~kn~~~~~s~~~~~ 298 (968)
T 3dmq_A 224 N----LRFALF-DDERYAEAQHDAYNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSREYQA 298 (968)
T ss_dssp C----CCCEEC-CHHHHHHHHHTTCSSSTTCSEEEECHHHHHTSTTTTHHHHTSCCCEEEECCSSCCCCBTTBCCHHHHH
T ss_pred C----CCEEEE-ccchhhhhhhhcccccccCCEEEEcHHHHhhCHHHHHHhhhcCCCEEEehhhHhhcCCCCcchHHHHH
Confidence 3 122222 3322211111 111247899999998864432222244567999999999999765422 112333
Q ss_pred HHHHhhcCccceEEEEccccCH-H---HHHHHhh----------------------------hcCCCEEEEccCCCCccc
Q psy15524 567 LEILKKQKPQFQSILLSATLTP-A---VQRLAGM----------------------------TLQNPIQIDAADSTDIHN 614 (930)
Q Consensus 567 ~~~l~~~~~~~q~vl~SAT~~~-~---~~~l~~~----------------------------~~~~~~~i~~~~~~~~~~ 614 (930)
+..+.. ...+++++|||+.. . +..+... .... .............
T Consensus 299 l~~L~~--~~~~~L~LTATPi~n~~~el~sll~~L~p~~~~~~~~f~~~~~~~~~i~~~~~~l~~~-~~~~~~~~~~L~~ 375 (968)
T 3dmq_A 299 IEQLAE--HVPGVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYCPVADAVAMLLAG-NKLSNDELNMLGE 375 (968)
T ss_dssp HHHHHT--TCSSEEESCSSCSSSCSSCTHHHHHHHCTTTCSSTHHHHHHHHHHHHHHHHHHTTTTS-CCCCGGGTTSSTT
T ss_pred HHHHhh--cCCcEEEEEcCCccCCHHHHHHHHHhcCccccCCHHHHHHHHHhHHHHHHHHHHHhcc-CCCCHHHHHHHHH
Confidence 344432 24468999999842 0 1111110 0000 0000000000000
Q ss_pred ----------------------------------------------CccceecCCCceEEE-------------------
Q psy15524 615 ----------------------------------------------TTDSLVIPDSLKQHF------------------- 629 (930)
Q Consensus 615 ----------------------------------------------~~~~~~~~~~~~~~~------------------- 629 (930)
.......|......+
T Consensus 376 ~l~~~~~~~l~~~~~~~~~~~~~~~~~~i~~lld~~g~~~~l~r~~r~~i~~~p~r~~~~~~l~~~~~~~~~~~~~~~~~ 455 (968)
T 3dmq_A 376 MIGEQDIEPLLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIKLPLPTQYQTAIKVSGIMG 455 (968)
T ss_dssp TTCTTCSSTTGGGTCCCSSCSTTTHHHHHHHHGGGCTTTTTEECCCTTTCCCCCCCCCCEEEECCCHHHHHHHHHHHHTT
T ss_pred HhcchhhHHHHhcccchhhhhHHHHHHHHHHHHHhhCcchhhhhhhhhhhcccChhheEeeecCCCHHHHHHHHHHhhhh
Confidence 000000011001111
Q ss_pred ---------------------------EEcCchhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcC
Q psy15524 630 ---------------------------IVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLG 682 (930)
Q Consensus 630 ---------------------------~~~~~~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~ 682 (930)
..+....|...+..++.. ..+.++||||++++.++.+++.|....
T Consensus 456 ~~~~~~~~~~~~l~pe~~~~~l~~~~~~~~~~~~K~~~L~~ll~~-------~~~~k~iVF~~~~~~~~~l~~~L~~~~- 527 (968)
T 3dmq_A 456 ARKSAEDRARDMLYPERIYQEFEGDNATWWNFDPRVEWLMGYLTS-------HRSQKVLVICAKAATALQLEQVLRERE- 527 (968)
T ss_dssp CCSSGGGGTHHHHCSGGGTTTTTSSSCCTTTTSHHHHHHHHHHHH-------TSSSCCCEECSSTHHHHHHHHHHHTTT-
T ss_pred hhhhhHHHHhhhcChHHHHHHhhhhhhcccCccHHHHHHHHHHHh-------CCCCCEEEEeCcHHHHHHHHHHHHHHc-
Confidence 112233456666666654 127899999999999999999998532
Q ss_pred CCceEEEecCCCCHHHHHHHHHHhhcCC--CcEEEeccccccccCCCCccEEEEecCCCChhhHHhhhcccccCCCCceE
Q psy15524 683 ENIAFFKLHGSMSQSERTEVFKTFRSVK--SGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSS 760 (930)
Q Consensus 683 ~~~~~~~lhg~~~~~~R~~v~~~F~~~~--~~vLv~T~~~~~GlDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~g~~ 760 (930)
|+.+..+||+|++.+|..+++.|++|+ .+|||||+++++|+|+|++++||++|+|.++..|+||+||+||.|+.|.+
T Consensus 528 -g~~~~~lhG~~~~~~R~~~l~~F~~g~~~~~vLvaT~v~~~GlDl~~~~~VI~~d~p~~~~~~~Q~~GR~~R~Gq~~~v 606 (968)
T 3dmq_A 528 -GIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRIGQAHDI 606 (968)
T ss_dssp -CCCEEEECTTSCTTHHHHHHHHHHSTTSSCEEEECSCCTTCSSCCTTCCEEECSSCCSSHHHHHHHHHTTSCSSSCSCC
T ss_pred -CCcEEEEeCCCCHHHHHHHHHHHhCCCCcccEEEecchhhcCCCcccCcEEEEecCCCCHHHHHHHhhccccCCCCceE
Confidence 788899999999999999999999998 99999999999999999999999999999999999999999999999977
Q ss_pred EEEeCc
Q psy15524 761 LLFLIP 766 (930)
Q Consensus 761 ~~~~~~ 766 (930)
+++...
T Consensus 607 ~v~~~~ 612 (968)
T 3dmq_A 607 QIHVPY 612 (968)
T ss_dssp EEEEEE
T ss_pred EEEEec
Confidence 766543
|
| >3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.9e-30 Score=272.31 Aligned_cols=209 Identities=27% Similarity=0.452 Sum_probs=168.2
Q ss_pred CCCCCC---CCCHHHHHHHHhcCCCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCe
Q psy15524 391 SYEEFP---GIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGI 467 (930)
Q Consensus 391 ~f~~l~---~l~~~~~~~l~~~~~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~ 467 (930)
+|+++. ++++.+.+.+.+ +||..|+|+|.++++.+++|+|+++.||||||||++|++|+++.+... ...+.
T Consensus 26 ~f~~l~~~~~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~-----~~~~~ 99 (245)
T 3dkp_A 26 TFQQLDQEYKINSRLLQNILD-AGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQLKQP-----ANKGF 99 (245)
T ss_dssp SHHHHHHHHCCCHHHHHHHHH-TTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHCSC-----CSSSC
T ss_pred CHHHhhhccCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHhhc-----ccCCc
Confidence 455542 799999999985 899999999999999999999999999999999999999999888541 23577
Q ss_pred eEEEEccCHHHHHHHHHHHHHhhccCCCcceEEEeCCCchHHH-HHHHhcCCcEEEECchhHHHhhhccC-CcccccceE
Q psy15524 468 YAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSE-KARIRKGISILVATPGRLLDHCKHTE-TLKFSKVEH 545 (930)
Q Consensus 468 ~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~-~~~~~~~~~Ilv~Tp~rl~~~l~~~~-~~~~~~l~~ 545 (930)
++||++||++|+.|+++.+.+++...+. ....+.|+...... ......+++|+|+|||++.+++.... .+.+.++++
T Consensus 100 ~~lil~Pt~~L~~q~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~~~ 178 (245)
T 3dkp_A 100 RALIISPTRELASQIHRELIKISEGTGF-RIHMIHKAAVAAKKFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLASVEW 178 (245)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTSCC-CEECCCHHHHHHTTTSTTSCCCCCEEEECHHHHHHHHHSSSCSCCCTTCCE
T ss_pred eEEEEeCCHHHHHHHHHHHHHHhcccCc-eEEEEecCccHHHHhhhhhcCCCCEEEECHHHHHHHHHhCCCCcccccCcE
Confidence 8999999999999999999998875543 33334443221111 11123568999999999999987643 467889999
Q ss_pred EEEecchhhhhc---CcHHHHHHHHHHHhhcCccceEEEEccccCHHHHHHHhhhcCCCEEEEccC
Q psy15524 546 LVLDEADRILDQ---GYERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAAD 608 (930)
Q Consensus 546 lVlDEah~l~~~---g~~~~l~~i~~~l~~~~~~~q~vl~SAT~~~~~~~l~~~~~~~~~~i~~~~ 608 (930)
+|+||||+++++ +|...+..++..+. .+..|+++||||+++.+.++++.++.+|+.+.+..
T Consensus 179 lViDEah~~~~~~~~~~~~~~~~i~~~~~--~~~~~~~~~SAT~~~~v~~~~~~~l~~p~~i~~~~ 242 (245)
T 3dkp_A 179 LVVDESDKLFEDGKTGFRDQLASIFLACT--SHKVRRAMFSATFAYDVEQWCKLNLDNVISVSIGA 242 (245)
T ss_dssp EEESSHHHHHHHC--CHHHHHHHHHHHCC--CTTCEEEEEESSCCHHHHHHHHHHSSSCEEEEECC
T ss_pred EEEeChHHhcccccccHHHHHHHHHHhcC--CCCcEEEEEeccCCHHHHHHHHHhCCCCEEEEeCC
Confidence 999999999984 67777776655443 24789999999999999999999999999988754
|
| >2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.9e-29 Score=285.77 Aligned_cols=254 Identities=30% Similarity=0.401 Sum_probs=199.0
Q ss_pred CCCccCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCc------------CCCCCCeEEEEEcccHH
Q psy15524 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPK------------ISRKDGIYAVIILPTRE 68 (930)
Q Consensus 1 ~g~~~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~------------~~~~~~~~~lvl~P~~~ 68 (930)
+||..|+|+|+++++.++.|+|++++||||+|||++|++|+++.+...... .....++++||++||++
T Consensus 33 ~~~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~ 112 (417)
T 2i4i_A 33 TRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRE 112 (417)
T ss_dssp HTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHHCCCHHHHHHHHCBTTBSCSBCCSEEEECSSHH
T ss_pred CCCCCCCHHHHHHHHHHccCCCEEEEcCCCCHHHHHHHHHHHHHHHhccccchhhccccccccccccCCccEEEECCcHH
Confidence 489999999999999999999999999999999999999999988654321 01123467999999999
Q ss_pred HHHHHHHHHHHHhhhcCCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEccccccccc
Q psy15524 69 LALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQ 148 (930)
Q Consensus 69 L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~ 148 (930)
|+.|+++.+++++...+ +.+..++|+.....+...+..+++|+|+||++|.+++.. ..+.+.++++|||||||++.++
T Consensus 113 L~~q~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~-~~~~~~~~~~iViDEah~~~~~ 190 (417)
T 2i4i_A 113 LAVQIYEEARKFSYRSR-VRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMER-GKIGLDFCKYLVLDEADRMLDM 190 (417)
T ss_dssp HHHHHHHHHHHHHTTSS-CCEEEECSSSCHHHHHHHHTTCCSEEEECHHHHHHHHHT-TSBCCTTCCEEEESSHHHHHHT
T ss_pred HHHHHHHHHHHHhCcCC-ceEEEEECCCCHHHHHHHhhCCCCEEEEChHHHHHHHHc-CCcChhhCcEEEEEChhHhhcc
Confidence 99999999999876544 677788899888888888888899999999999998876 5567899999999999999999
Q ss_pred CcHHHHHHHHHHHhhc-CCCceEEEEEeecCCCccccccccccccccccchhhhhhhhhhhccchhhHHHHHHHHhhcCc
Q psy15524 149 GYERDIAEFLEILKKQ-KPQFQSILLSATLTPATCWCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKP 227 (930)
Q Consensus 149 ~~~~~~~~i~~~l~~~-~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~de~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (930)
+|...+..++...... ....
T Consensus 191 ~~~~~~~~i~~~~~~~~~~~~----------------------------------------------------------- 211 (417)
T 2i4i_A 191 GFEPQIRRIVEQDTMPPKGVR----------------------------------------------------------- 211 (417)
T ss_dssp TCHHHHHHHHTSSSCCCBTTB-----------------------------------------------------------
T ss_pred CcHHHHHHHHHhccCCCcCCc-----------------------------------------------------------
Confidence 9988887776532111 1123
Q ss_pred CceEEEEecccchHHHHhhhccccCCeeeccCCcccccCCCcccccCCCceeEEEEcCcchhHHHHHHHHhhhccccccC
Q psy15524 228 QFQSVLLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALASFILGKCQNVNED 307 (930)
Q Consensus 228 ~~q~~~~sat~~~~~~~l~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~ 307 (930)
|.+++|||++..+..+...++.++..+...... ..+.++.+.+..++...|...+..++.. ..
T Consensus 212 --~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~i~~~~~~~~~~~~~~~l~~~l~~------~~ 274 (417)
T 2i4i_A 212 --HTMMFSATFPKEIQMLARDFLDEYIFLAVGRVG---------STSENITQKVVWVEESDKRSFLLDLLNA------TG 274 (417)
T ss_dssp --EEEEEESCCCHHHHHHHHHHCSSCEEEEEC-------------CCSSEEEEEEECCGGGHHHHHHHHHHT------CC
T ss_pred --EEEEEEEeCCHHHHHHHHHHcCCCEEEEeCCCC---------CCccCceEEEEEeccHhHHHHHHHHHHh------cC
Confidence 555555555555556666666666655443322 2346788888888888899988888843 23
Q ss_pred CcceEEEEEecccchhhhHHHHhhh
Q psy15524 308 EESKMLVFMATQDMADYHTELLSTK 332 (930)
Q Consensus 308 ~~~~~iVF~~s~~~~~~l~~~L~~~ 332 (930)
.+.++||||++++.++.++..|+..
T Consensus 275 ~~~~~lVf~~~~~~~~~l~~~L~~~ 299 (417)
T 2i4i_A 275 KDSLTLVFVETKKGADSLEDFLYHE 299 (417)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHT
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHC
Confidence 5679999999999999999999764
|
| >3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A | Back alignment and structure |
|---|
Probab=99.96 E-value=2.6e-29 Score=262.84 Aligned_cols=193 Identities=33% Similarity=0.519 Sum_probs=164.1
Q ss_pred CCCccCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHH
Q psy15524 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKL 80 (930)
Q Consensus 1 ~g~~~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~ 80 (930)
+||+.|+|+|+++++.++.|+|+++++|||||||++|++|++..+...... ....++++||++||++|+.|+++.++++
T Consensus 47 ~g~~~~~~~Q~~~i~~~~~g~~~l~~apTGsGKT~~~~l~~l~~l~~~~~~-~~~~~~~~lil~Pt~~L~~Q~~~~~~~~ 125 (242)
T 3fe2_A 47 QNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFL-ERGDGPICLVLAPTRELAQQVQQVAAEY 125 (242)
T ss_dssp TTCCSCCHHHHHHHHHHHHTCCEEEEECTTSCHHHHHHHHHHHHHHTSCCC-CTTCCCSEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHhCCCCEEEECCCcCHHHHHHHHHHHHHHHhcccc-ccCCCCEEEEEeCcHHHHHHHHHHHHHH
Confidence 589999999999999999999999999999999999999999998753321 2234678999999999999999999999
Q ss_pred hhhcCCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCcHHHHHHHHHH
Q psy15524 81 CKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEI 160 (930)
Q Consensus 81 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~~~~~~~i~~~ 160 (930)
+...+ +.+..++|+.....+...+..+++|+|+||+++.+++.. ....+.++++|||||||++++++|+..+..++..
T Consensus 126 ~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~-~~~~~~~~~~lViDEah~l~~~~~~~~~~~i~~~ 203 (242)
T 3fe2_A 126 CRACR-LKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLEC-GKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQ 203 (242)
T ss_dssp HHHTT-CCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHH-TSCCCTTCCEEEETTHHHHHHTTCHHHHHHHHTT
T ss_pred HhhcC-ceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHc-CCCCcccccEEEEeCHHHHhhhCcHHHHHHHHHh
Confidence 87665 677888899888888888888899999999999999875 5567899999999999999999999888877654
Q ss_pred HhhcCCCceEEEEEeecCCCccccccccccccccccchhhhhhhhhhhccchhhHHHHHHHHhhcCcCceEEEEecccch
Q psy15524 161 LKKQKPQFQSILLSATLTPATCWCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLTP 240 (930)
Q Consensus 161 l~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~de~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~sat~~~ 240 (930)
++. ..|+++||||+++
T Consensus 204 ~~~----------------------------------------------------------------~~q~~~~SAT~~~ 219 (242)
T 3fe2_A 204 IRP----------------------------------------------------------------DRQTLMWSATWPK 219 (242)
T ss_dssp SCS----------------------------------------------------------------SCEEEEEESCCCH
T ss_pred CCc----------------------------------------------------------------cceEEEEEeecCH
Confidence 422 2277777777778
Q ss_pred HHHHhhhccccCCeeeccCC
Q psy15524 241 AVQRLAGMTLQNPIQIDAAD 260 (930)
Q Consensus 241 ~~~~l~~~~l~~~~~i~~~~ 260 (930)
.+..++..++.+|+.+.+..
T Consensus 220 ~~~~~~~~~l~~~~~i~~~~ 239 (242)
T 3fe2_A 220 EVRQLAEDFLKDYIHINIGA 239 (242)
T ss_dssp HHHHHHHHHCSSCEEEEECC
T ss_pred HHHHHHHHHCCCCEEEEecC
Confidence 88888888999998887654
|
| >1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A | Back alignment and structure |
|---|
Probab=99.96 E-value=8.6e-29 Score=288.41 Aligned_cols=318 Identities=16% Similarity=0.205 Sum_probs=207.8
Q ss_pred CCCCHHHHHhHHhhh----cCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHHHH
Q psy15524 413 TQVTTVQQLSIQPIL----DGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTK 488 (930)
Q Consensus 413 ~~~~~iQ~~~i~~il----~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~ 488 (930)
..|+|+|.++++.+. .++++++.++||+|||++++..+ ..+.. .....++|||+|+ +|+.||.+++.+
T Consensus 36 ~~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~~i-~~~~~------~~~~~~~LIv~P~-~l~~qw~~e~~~ 107 (500)
T 1z63_A 36 ANLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVF-SDAKK------ENELTPSLVICPL-SVLKNWEEELSK 107 (500)
T ss_dssp SCCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHH-HHHHH------TTCCSSEEEEECS-TTHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHHHHH-HHHHh------cCCCCCEEEEccH-HHHHHHHHHHHH
Confidence 379999999998764 57889999999999999965444 44433 1335679999995 699999999998
Q ss_pred hhccCCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhccCCcccccceEEEEecchhhhhcCcHHHHHHHHH
Q psy15524 489 LCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLE 568 (930)
Q Consensus 489 ~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~l~~~g~~~~l~~i~~ 568 (930)
++.. ..+..+.|+... ....+.+|+|+||+.+..... +....+++||+||||++.+.+.. ....+.
T Consensus 108 ~~~~---~~v~~~~g~~~~-----~~~~~~~ivi~t~~~l~~~~~----l~~~~~~~vIvDEaH~~kn~~~~--~~~~l~ 173 (500)
T 1z63_A 108 FAPH---LRFAVFHEDRSK-----IKLEDYDIILTTYAVLLRDTR----LKEVEWKYIVIDEAQNIKNPQTK--IFKAVK 173 (500)
T ss_dssp HCTT---SCEEECSSSTTS-----CCGGGSSEEEEEHHHHTTCHH----HHTCCEEEEEEETGGGGSCTTSH--HHHHHH
T ss_pred HCCC---ceEEEEecCchh-----ccccCCcEEEeeHHHHhccch----hcCCCcCEEEEeCccccCCHhHH--HHHHHH
Confidence 8643 233444444321 112457999999999865432 33456899999999999765421 223333
Q ss_pred HHhhcCccceEEEEccccCHH-HHHH---Hhhhc--------------------------------CCCEEEEccCCCCc
Q psy15524 569 ILKKQKPQFQSILLSATLTPA-VQRL---AGMTL--------------------------------QNPIQIDAADSTDI 612 (930)
Q Consensus 569 ~l~~~~~~~q~vl~SAT~~~~-~~~l---~~~~~--------------------------------~~~~~i~~~~~~~~ 612 (930)
.++ ..+.+++|||+... ..++ ..... -.|..+.......
T Consensus 174 ~l~----~~~~l~LTaTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~lrr~k~~~- 248 (500)
T 1z63_A 174 ELK----SKYRIALTGTPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKGDNMAKEELKAIISPFILRRTKYDK- 248 (500)
T ss_dssp TSC----EEEEEEECSSCSTTCHHHHHHHHHHHSTTTTCCHHHHHTTTHHHHHTTCHHHHHHHHHHHTTTEECCCTTCH-
T ss_pred hhc----cCcEEEEecCCCCCCHHHHHHHHHHhCCCcCCCHHHHHHHhccccccccHHHHHHHHHHHhhHeeeeccccc-
Confidence 332 45679999998432 2211 11100 0111111110000
Q ss_pred ccCccceecCCCceEEEEEc--------------------------------------------------------Cchh
Q psy15524 613 HNTTDSLVIPDSLKQHFIVT--------------------------------------------------------PPKL 636 (930)
Q Consensus 613 ~~~~~~~~~~~~~~~~~~~~--------------------------------------------------------~~~~ 636 (930)
......|.......... ....
T Consensus 249 ---~~~~~lp~~~~~~v~~~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~~~~~p~l~~~~~~~~~~s~ 325 (500)
T 1z63_A 249 ---AIINDLPDKIETNVYCNLTPEQAAMYKAEVENLFNNIDSVTGIKRKGMILSTLLKLKQIVDHPALLKGGEQSVRRSG 325 (500)
T ss_dssp ---HHHTTSCSEEEEEEEECCCHHHHHHHHHHHHHHTTTTTTCCTHHHHHHHHHHHHHHHHHTTCTHHHHCSCCCSTTCH
T ss_pred ---chhhcCCCCeEEEEEcCCCHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhCCHHHhcCccchhhcch
Confidence 00001122211111111 1112
Q ss_pred hHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHHHHHHHHHHhhcC-CCc-EE
Q psy15524 637 RLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSV-KSG-VL 714 (930)
Q Consensus 637 ~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~v~~~F~~~-~~~-vL 714 (930)
|...+...+..... .+.++||||.+.+.++.+.+.|.... +..+..+||++++.+|..++++|+++ ... +|
T Consensus 326 K~~~l~~~l~~~~~-----~~~k~lvF~~~~~~~~~l~~~l~~~~--~~~~~~~~g~~~~~~R~~~~~~F~~~~~~~vil 398 (500)
T 1z63_A 326 KMIRTMEIIEEALD-----EGDKIAIFTQFVDMGKIIRNIIEKEL--NTEVPFLYGELSKKERDDIISKFQNNPSVKFIV 398 (500)
T ss_dssp HHHHHHHHHHHHHT-----TTCCEEEECSCHHHHHHHHHHHHHHH--TCCCCEEETTSCHHHHHHHHHHHHHCTTCCCCE
T ss_pred hHHHHHHHHHHHHc-----cCCcEEEEEehHHHHHHHHHHHHHhh--CCCeEEEECCCCHHHHHHHHHHhcCCCCCCEEE
Confidence 33333333333221 36799999999999999999998743 45667789999999999999999998 454 79
Q ss_pred EeccccccccCCCCccEEEEecCCCChhhHHhhhcccccCCCCceEEE--EeCcc
Q psy15524 715 ICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLL--FLIPS 767 (930)
Q Consensus 715 v~T~~~~~GlDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~g~~~~--~~~~~ 767 (930)
+||+++++|+|+|++++||++|+|+++..|.||+||++|.|+.+.+.+ ++...
T Consensus 399 ~st~~~~~Glnl~~~~~vi~~d~~~~~~~~~Q~~gR~~R~Gq~~~v~v~~lv~~~ 453 (500)
T 1z63_A 399 LSVKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVG 453 (500)
T ss_dssp EECCCC-CCCCCTTCSEEEESSCCSCC---CHHHHTTTTTTTTSCEEEEEEEETT
T ss_pred EecccccCCCchhhCCEEEEeCCCCCcchHHHHHHHHHHcCCCCeeEEEEEEeCC
Confidence 999999999999999999999999999999999999999999876643 44443
|
| >2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A | Back alignment and structure |
|---|
Probab=99.96 E-value=6.3e-29 Score=282.25 Aligned_cols=244 Identities=27% Similarity=0.452 Sum_probs=191.8
Q ss_pred CCCccCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHH
Q psy15524 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKL 80 (930)
Q Consensus 1 ~g~~~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~ 80 (930)
+||+.|+|+|+++++.+++|+|+++++|||+|||++|++|+++.+.. ...+.++||++||++|+.|+++.++++
T Consensus 55 ~g~~~~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~------~~~~~~~lil~Pt~~L~~q~~~~~~~~ 128 (410)
T 2j0s_A 55 YGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDI------QVRETQALILAPTRELAVQIQKGLLAL 128 (410)
T ss_dssp HTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHTCCT------TSCSCCEEEECSSHHHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHhCCCCEEEECCCCCCchHHHHHHHHHHHhh------ccCCceEEEEcCcHHHHHHHHHHHHHH
Confidence 48999999999999999999999999999999999999999987743 123567999999999999999999998
Q ss_pred hhhcCCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCcHHHHHHHHHH
Q psy15524 81 CKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEI 160 (930)
Q Consensus 81 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~~~~~~~i~~~ 160 (930)
+...+ +.+..+.|+.....+...+..+++|+|+||+++.+++.. ..+.+.++++||+||||++.+++|...+..++..
T Consensus 129 ~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~ivv~Tp~~l~~~l~~-~~~~~~~~~~vViDEah~~~~~~~~~~~~~i~~~ 206 (410)
T 2j0s_A 129 GDYMN-VQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRR-RSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRY 206 (410)
T ss_dssp TTTTT-CCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHT-TSSCCTTCCEEEEETHHHHTSTTTHHHHHHHHTT
T ss_pred hccCC-eEEEEEECCCCHHHHHHHhhcCCCEEEcCHHHHHHHHHh-CCccHhheeEEEEccHHHHHhhhhHHHHHHHHHh
Confidence 86554 677788899888888777878899999999999999876 5667889999999999999999988777665543
Q ss_pred HhhcCCCceEEEEEeecCCCccccccccccccccccchhhhhhhhhhhccchhhHHHHHHHHhhcCcCceEEEEecccch
Q psy15524 161 LKKQKPQFQSILLSATLTPATCWCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLTP 240 (930)
Q Consensus 161 l~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~de~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~sat~~~ 240 (930)
+ ++..|++++|||+ +.
T Consensus 207 ~---~~~~~~i~~SAT~-------------------------------------------------------------~~ 222 (410)
T 2j0s_A 207 L---PPATQVVLISATL-------------------------------------------------------------PH 222 (410)
T ss_dssp S---CTTCEEEEEESCC-------------------------------------------------------------CH
T ss_pred C---ccCceEEEEEcCC-------------------------------------------------------------CH
Confidence 3 2334555555554 44
Q ss_pred HHHHhhhccccCCeeeccCCcccccCCCcccccCCCceeEEEEcCcc-hhHHHHHHHHhhhccccccCCcceEEEEEecc
Q psy15524 241 AVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPK-LRLVALASFILGKCQNVNEDEESKMLVFMATQ 319 (930)
Q Consensus 241 ~~~~l~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~k~~~l~~~l~~~~~~~~~~~~~~~iVF~~s~ 319 (930)
.+..+...++.++..+...... .....+.+.+..++.. .|...+..++.. ....++||||+++
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~k~~~l~~~~~~-------~~~~~~lVf~~~~ 286 (410)
T 2j0s_A 223 EILEMTNKFMTDPIRILVKRDE---------LTLEGIKQFFVAVEREEWKFDTLCDLYDT-------LTITQAVIFCNTK 286 (410)
T ss_dssp HHHTTGGGTCSSCEEECCCGGG---------CSCTTEEEEEEEESSTTHHHHHHHHHHHH-------HTSSEEEEECSSH
T ss_pred HHHHHHHHHcCCCEEEEecCcc---------ccCCCceEEEEEeCcHHhHHHHHHHHHHh-------cCCCcEEEEEcCH
Confidence 4555555666666665443322 2345677777776654 488888887733 3456999999999
Q ss_pred cchhhhHHHHhhh
Q psy15524 320 DMADYHTELLSTK 332 (930)
Q Consensus 320 ~~~~~l~~~L~~~ 332 (930)
+.++.++..|...
T Consensus 287 ~~~~~l~~~L~~~ 299 (410)
T 2j0s_A 287 RKVDWLTEKMREA 299 (410)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhC
Confidence 9999999999764
|
| >2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B* | Back alignment and structure |
|---|
Probab=99.96 E-value=2.1e-28 Score=299.29 Aligned_cols=330 Identities=14% Similarity=0.146 Sum_probs=214.9
Q ss_pred CCCCHHHHHhHHhhhc--------------CCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHH
Q psy15524 413 TQVTTVQQLSIQPILD--------------GGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTREL 478 (930)
Q Consensus 413 ~~~~~iQ~~~i~~il~--------------~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreL 478 (930)
..|+|+|..|++.++. +++.++.++||||||+++ ++++..+.. .....++|||+|+++|
T Consensus 270 ~~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~-~~l~~ll~~------~~~~~rvLvlvpr~eL 342 (1038)
T 2w00_A 270 LVMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTS-FKAARLATE------LDFIDKVFFVVDRKDL 342 (1038)
T ss_dssp EECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHH-HHHHHHHTT------CTTCCEEEEEECGGGC
T ss_pred ccCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHH-HHHHHHHHh------cCCCceEEEEeCcHHH
Confidence 3599999999999876 368999999999999997 677655432 1234689999999999
Q ss_pred HHHHHHHHHHhhccCCCcceEEEeCCCchHHHHHHHh-cCCcEEEECchhHHHhhhccCC-cccccceEEEEecchhhhh
Q psy15524 479 ALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIR-KGISILVATPGRLLDHCKHTET-LKFSKVEHLVLDEADRILD 556 (930)
Q Consensus 479 a~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~-~~~~Ilv~Tp~rl~~~l~~~~~-~~~~~l~~lVlDEah~l~~ 556 (930)
+.|+.+.+..+... .+.++.+.......+. .+.+|+|+||++|..++..... ..+....+||+||||++..
T Consensus 343 ~~Q~~~~f~~f~~~-------~v~~~~s~~~l~~~L~~~~~~IiVtTiqkl~~~l~~~~~~~~~~~~~lvIiDEAHrs~~ 415 (1038)
T 2w00_A 343 DYQTMKEYQRFSPD-------SVNGSENTAGLKRNLDKDDNKIIVTTIQKLNNLMKAESDLPVYNQQVVFIFDECHRSQF 415 (1038)
T ss_dssp CHHHHHHHHTTSTT-------CSSSSCCCHHHHHHHHCSSCCEEEEEHHHHHHHHHHCCCCGGGGSCEEEEEESCCTTHH
T ss_pred HHHHHHHHHHhccc-------ccccccCHHHHHHHhcCCCCCEEEEEHHHHHHHHhcccchhccccccEEEEEccchhcc
Confidence 99999999886542 1234555555555553 4689999999999987764321 2456789999999999764
Q ss_pred cCcHHHHHHHHHHHhhcCccceEEEEccccCHH--------HHHHHh-------------hhcCCCEEEEccCCCC-ccc
Q psy15524 557 QGYERDIAEFLEILKKQKPQFQSILLSATLTPA--------VQRLAG-------------MTLQNPIQIDAADSTD-IHN 614 (930)
Q Consensus 557 ~g~~~~l~~i~~~l~~~~~~~q~vl~SAT~~~~--------~~~l~~-------------~~~~~~~~i~~~~~~~-~~~ 614 (930)
. .....|...+ +..++++||||+... ...+.+ ....-|..+....... ...
T Consensus 416 ~---~~~~~I~~~~----p~a~~lgfTATP~~~~~~~~~~~t~~~FG~~i~~Y~l~~AI~dg~l~p~~v~y~~v~~~~~~ 488 (1038)
T 2w00_A 416 G---EAQKNLKKKF----KRYYQFGFTGTPIFPENALGSETTASVFGRELHSYVITDAIRDEKVLKFKVDYNDVRPQFKS 488 (1038)
T ss_dssp H---HHHHHHHHHC----SSEEEEEEESSCCCSTTCTTSCCHHHHHCSEEEEECHHHHHHHTSSCCEEEEECCCCGGGHH
T ss_pred h---HHHHHHHHhC----CcccEEEEeCCccccccchhhhHHHHHhCCeeEeecHHHHHhCCCcCCeEEEEEeccchhhh
Confidence 3 2344454444 367999999998742 222221 1111122221111000 000
Q ss_pred -Ccc-ceecCCCceEEEEEcCchhhHHHHHHHHHhhccCC-----CcCCCceEEEEecchhhHHHHHHHHhhhcC-----
Q psy15524 615 -TTD-SLVIPDSLKQHFIVTPPKLRLVALASFILGKCQNV-----NEDEESKMLVFMATQDMADYHTELLSTVLG----- 682 (930)
Q Consensus 615 -~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-----~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~----- 682 (930)
..+ .......+.+... .....+...++..+..+.... ....+.++||||+|++.|..+++.|.+...
T Consensus 489 ~~~e~d~~~~~~i~~~~~-l~~~~ri~~I~~~Il~~~~~~~~~~~~~~~g~kamVf~~S~~~A~~~~~~l~~~~~~~~~~ 567 (1038)
T 2w00_A 489 LETETDEKKLSAAENQQA-FLHPMRIQEITQYILNNFRQKTHRTFPGSKGFNAMLAVSSVDAAKAYYATFKRLQEEAANK 567 (1038)
T ss_dssp HHTCCCHHHHHHTCSTTT-TTCHHHHHHHHHHHHHHHHHHTTCSSSSCCCCEEEEEESSHHHHHHHHHHHHHHHHHHTTT
T ss_pred ccccccHHHHHHHHHHHH-hcCHHHHHHHHHHHHHHHHHhhhhhcccCCCCcEEEEECCHHHHHHHHHHHHhhhhhhccc
Confidence 000 0000000000000 112334444444443322110 001246899999999999999999987641
Q ss_pred ----CCceE-EEecCC----------C----------CH-----------------------------HHHHHHHHHhhc
Q psy15524 683 ----ENIAF-FKLHGS----------M----------SQ-----------------------------SERTEVFKTFRS 708 (930)
Q Consensus 683 ----~~~~~-~~lhg~----------~----------~~-----------------------------~~R~~v~~~F~~ 708 (930)
.+..+ ..+||+ + ++ ..|..+.++|++
T Consensus 568 ~~~~~~~k~avv~s~~~~~~~~~~G~~~~e~~~~~~~~~~~r~~l~~~I~dyn~~f~~~~~~~~~~~~~~R~~i~~~Fk~ 647 (1038)
T 2w00_A 568 SATYKPLRIATIFSFAANEEQNAIGEISDETFDTSAMDSSAKEFLDAAIREYNSHFKTNFSTDSNGFQNYYRDLAQRVKN 647 (1038)
T ss_dssp SSSCCCCCEEEECCCCC------CCCCCCCCSCGGGSCHHHHHHHHHHHHHHHHHHTCCCCSSHHHHHHHHHHHHHHHHT
T ss_pred ccccccCcEEEEEeCCCccccccccccccccccccccchhHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHc
Confidence 12333 455653 2 22 148889999999
Q ss_pred CCCcEEEeccccccccCCCCccEEEEecCCCChhhHHhhhcccccCCCC----ceEEEEeC
Q psy15524 709 VKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHE----GSSLLFLI 765 (930)
Q Consensus 709 ~~~~vLv~T~~~~~GlDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~----g~~~~~~~ 765 (930)
|+.+|||+|+++.+|+|+|.+ .++.+|.|.+...|+|++||++|.+.. |..+.|+.
T Consensus 648 g~i~ILIvvd~lltGfDiP~l-~tlylDkpl~~~~liQaIGRtnR~~~~~K~~G~IVdf~~ 707 (1038)
T 2w00_A 648 QDIDLLIVVGMFLTGFDAPTL-NTLFVDKNLRYHGLMQAFSRTNRIYDATKTFGNIVTFRD 707 (1038)
T ss_dssp TSSSEEEESSTTSSSCCCTTE-EEEEEESCCCHHHHHHHHHTTCCCCCTTCCSEEEEESSC
T ss_pred CCCeEEEEcchHHhCcCcccc-cEEEEccCCCccceeehhhccCcCCCCCCCcEEEEEccc
Confidence 999999999999999999999 678899999999999999999999764 55554443
|
| >3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=8.5e-29 Score=256.61 Aligned_cols=158 Identities=32% Similarity=0.487 Sum_probs=127.6
Q ss_pred CCCccCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHH
Q psy15524 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKL 80 (930)
Q Consensus 1 ~g~~~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~ 80 (930)
+||..|+++|+++++.+++|+|+++++|||+|||++|++|++..+...........+.++||++||++|+.|++++++++
T Consensus 38 ~g~~~~~~~Q~~~i~~~~~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 117 (228)
T 3iuy_A 38 VGILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISREQRNGPGMLVLTPTRELALHVEAECSKY 117 (228)
T ss_dssp HTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHC---------CCCSEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhccchhhccCCCcEEEEeCCHHHHHHHHHHHHHh
Confidence 48999999999999999999999999999999999999999998864332222235778999999999999999999998
Q ss_pred hhhcCCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCcHHHHHHHHHH
Q psy15524 81 CKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEI 160 (930)
Q Consensus 81 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~~~~~~~i~~~ 160 (930)
.. ....+..++|+.....+...+..+++|+|+||+++.+++.. ....+.++++|||||||++.+++|+..+..++..
T Consensus 118 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~-~~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~ 194 (228)
T 3iuy_A 118 SY--KGLKSICIYGGRNRNGQIEDISKGVDIIIATPGRLNDLQMN-NSVNLRSITYLVIDEADKMLDMEFEPQIRKILLD 194 (228)
T ss_dssp CC--TTCCEEEECC------CHHHHHSCCSEEEECHHHHHHHHHT-TCCCCTTCCEEEECCHHHHHHTTCHHHHHHHHHH
T ss_pred cc--cCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHc-CCcCcccceEEEEECHHHHhccchHHHHHHHHHh
Confidence 62 33667778888887777777888899999999999998775 5567899999999999999999999988887765
Q ss_pred H
Q psy15524 161 L 161 (930)
Q Consensus 161 l 161 (930)
+
T Consensus 195 ~ 195 (228)
T 3iuy_A 195 V 195 (228)
T ss_dssp S
T ss_pred C
Confidence 5
|
| >3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=5.3e-29 Score=267.86 Aligned_cols=186 Identities=25% Similarity=0.435 Sum_probs=155.4
Q ss_pred CCCccCcHHHHHHHHHhhcC--CcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHH
Q psy15524 1 MNITQVTTVQQLSIQPILDG--GDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFT 78 (930)
Q Consensus 1 ~g~~~l~~~Q~~ai~~~~~g--~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~ 78 (930)
+||..||++|+++||.++.| +|++++||||||||++|++|+++.+.. ...++++|||+||++|+.|+++.++
T Consensus 110 ~g~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~------~~~~~~~lil~PtreLa~Q~~~~~~ 183 (300)
T 3fmo_B 110 MGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEP------ANKYPQCLCLSPTYELALQTGKVIE 183 (300)
T ss_dssp TTCCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHHCCT------TSCSCCEEEECSSHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHHHhhhc------cCCCceEEEEcCcHHHHHHHHHHHH
Confidence 68999999999999999987 999999999999999999999998754 2345679999999999999999999
Q ss_pred HHhhhcCCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccc-cCcHHHHHHH
Q psy15524 79 KLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILD-QGYERDIAEF 157 (930)
Q Consensus 79 ~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~-~~~~~~~~~i 157 (930)
.++..+..+.+....|+....... ..+++|+||||++|++++.+.+.+.++++++|||||||+|++ .+|...+..+
T Consensus 184 ~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~IlV~TP~~l~~~l~~~~~~~l~~l~~lVlDEad~l~~~~~~~~~~~~i 260 (300)
T 3fmo_B 184 QMGKFYPELKLAYAVRGNKLERGQ---KISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRI 260 (300)
T ss_dssp HHTTTSTTCCEEEESTTCCCCTTC---CCCCSEEEECHHHHHHHHTTTCCCCGGGCSEEEETTHHHHHHSTTHHHHHHHH
T ss_pred HHHhhCCCcEEEEEeCCccHhhhh---cCCCCEEEECHHHHHHHHHhcCCCChhhceEEEEeCHHHHhhccCcHHHHHHH
Confidence 998876667777788776544322 456899999999999999776777889999999999999998 6787777666
Q ss_pred HHHHhhcCCCceEEEEEeecCCCccccccccccccccccchhhhhhhhhhhccchhhHHHHHHHHhhcCcCceEEEEecc
Q psy15524 158 LEILKKQKPQFQSILLSATLTPATCWCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSAT 237 (930)
Q Consensus 158 ~~~l~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~de~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~sat 237 (930)
+..++. ..|+++||||
T Consensus 261 ~~~~~~----------------------------------------------------------------~~q~i~~SAT 276 (300)
T 3fmo_B 261 QRMLPR----------------------------------------------------------------NCQMLLFSAT 276 (300)
T ss_dssp HTTSCT----------------------------------------------------------------TCEEEEEESC
T ss_pred HHhCCC----------------------------------------------------------------CCEEEEEecc
Confidence 544321 2378888888
Q ss_pred cchHHHHhhhccccCCeeeccC
Q psy15524 238 LTPAVQRLAGMTLQNPIQIDAA 259 (930)
Q Consensus 238 ~~~~~~~l~~~~l~~~~~i~~~ 259 (930)
++..+..++..++.+|..|.+.
T Consensus 277 ~~~~v~~~a~~~l~~p~~i~~~ 298 (300)
T 3fmo_B 277 FEDSVWKFAQKVVPDPNVIKLK 298 (300)
T ss_dssp CCHHHHHHHHHHSSSCEEEEEC
T ss_pred CCHHHHHHHHHHCCCCeEEEec
Confidence 8888889999999999887653
|
| >3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=4.5e-28 Score=253.86 Aligned_cols=187 Identities=36% Similarity=0.586 Sum_probs=159.0
Q ss_pred CCCccCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHH
Q psy15524 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKL 80 (930)
Q Consensus 1 ~g~~~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~ 80 (930)
+||..|+++|+++++.+++|+|+++++|||+|||++|++|+++.+... ..+.++||++||++|+.|+++.++++
T Consensus 61 ~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~il~~l~~~------~~~~~~lil~Ptr~L~~q~~~~~~~~ 134 (249)
T 3ber_A 61 LGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLET------PQRLFALVLTPTRELAFQISEQFEAL 134 (249)
T ss_dssp TTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHS------CCSSCEEEECSSHHHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCCchhHhHHHHHHHHhcC------CCCceEEEEeCCHHHHHHHHHHHHHH
Confidence 589999999999999999999999999999999999999999988762 23567999999999999999999999
Q ss_pred hhhcCCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCcHHHHHHHHHH
Q psy15524 81 CKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEI 160 (930)
Q Consensus 81 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~~~~~~~i~~~ 160 (930)
+...+ +.+..+.|+.....+...+..+++|+|+||+++.+.+.+...+.+.++++||+||||++.+++|+..+..++..
T Consensus 135 ~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l~~~~~~~~l~~i~~~ 213 (249)
T 3ber_A 135 GSSIG-VQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKV 213 (249)
T ss_dssp HGGGT-CCEEEECTTSCHHHHHHHHHTCCSEEEECHHHHHHHHHHSTTCCCTTCCEEEECSHHHHHHTTCHHHHHHHHHS
T ss_pred hccCC-eeEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCcCccccCEEEEcChhhhhccChHHHHHHHHHh
Confidence 87655 67778888888777777778889999999999999987656667899999999999999999998888777654
Q ss_pred HhhcCCCceEEEEEeecCCCccccccccccccccccchhhhhhhhhhhccchhhHHHHHHHHhhcCcCceEEEEecccch
Q psy15524 161 LKKQKPQFQSILLSATLTPATCWCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLTP 240 (930)
Q Consensus 161 l~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~de~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~sat~~~ 240 (930)
++. ..|.++||||++.
T Consensus 214 ~~~----------------------------------------------------------------~~~~l~~SAT~~~ 229 (249)
T 3ber_A 214 IPR----------------------------------------------------------------DRKTFLFSATMTK 229 (249)
T ss_dssp SCS----------------------------------------------------------------SSEEEEEESSCCH
T ss_pred CCC----------------------------------------------------------------CCeEEEEeccCCH
Confidence 421 1267777777777
Q ss_pred HHHHhhhccccCCeeecc
Q psy15524 241 AVQRLAGMTLQNPIQIDA 258 (930)
Q Consensus 241 ~~~~l~~~~l~~~~~i~~ 258 (930)
.++.+++.++.+|..+.+
T Consensus 230 ~v~~~~~~~l~~p~~i~v 247 (249)
T 3ber_A 230 KVQKLQRAALKNPVKCAV 247 (249)
T ss_dssp HHHHHHHHHCSSCEEEEC
T ss_pred HHHHHHHHHCCCCEEEEe
Confidence 788888888888887754
|
| >3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=3.3e-28 Score=256.98 Aligned_cols=171 Identities=40% Similarity=0.692 Sum_probs=143.9
Q ss_pred CCCccCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHH
Q psy15524 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKL 80 (930)
Q Consensus 1 ~g~~~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~ 80 (930)
+||+.|+++|+++++.++.|+|++++||||||||++|++|+++.+...+.. ...+.++||++||++|+.|+++.++++
T Consensus 72 ~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~--~~~~~~~lil~Pt~~La~q~~~~~~~~ 149 (262)
T 3ly5_A 72 MGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRFM--PRNGTGVLILSPTRELAMQTFGVLKEL 149 (262)
T ss_dssp TTCCBCCHHHHHHHHHHHHTCCCEECCCTTSCHHHHHHHHHHHHHHHTTCC--GGGCCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHhCCCcEEEEccCCCCchHHHHHHHHHHHHhcccc--ccCCceEEEEeCCHHHHHHHHHHHHHH
Confidence 589999999999999999999999999999999999999999998763321 124677999999999999999999999
Q ss_pred hhhcCCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCcHHHHHHHHHH
Q psy15524 81 CKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEI 160 (930)
Q Consensus 81 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~~~~~~~i~~~ 160 (930)
+...+ ..+..+.|+.........+..+++|+|+||+++.+++.....+.+.++++|||||||++++++|+..+..++..
T Consensus 150 ~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~l~~lViDEah~l~~~~~~~~l~~i~~~ 228 (262)
T 3ly5_A 150 MTHHV-HTYGLIMGGSNRSAEAQKLGNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKL 228 (262)
T ss_dssp TTTCC-SCEEEECSSSCHHHHHHHHHHCCSEEEECHHHHHHHHHHCTTCCCTTCCEEEECSHHHHHHTTCHHHHHHHHHH
T ss_pred HhhcC-ceEEEEECCCCHHHHHHHhcCCCCEEEEcHHHHHHHHHccCCcccccCCEEEEcChHHHhhhhHHHHHHHHHHh
Confidence 87655 66777888888877777777789999999999999888766677899999999999999999999998888776
Q ss_pred HhhcCCCceEEEEEeec
Q psy15524 161 LKKQKPQFQSILLSATL 177 (930)
Q Consensus 161 l~~~~~~~~~i~lSAT~ 177 (930)
++. .+|+++||||+
T Consensus 229 ~~~---~~q~l~~SAT~ 242 (262)
T 3ly5_A 229 LPT---RRQTMLFSATQ 242 (262)
T ss_dssp SCS---SSEEEEECSSC
T ss_pred CCC---CCeEEEEEecC
Confidence 642 23444444444
|
| >3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.1e-27 Score=283.32 Aligned_cols=266 Identities=29% Similarity=0.431 Sum_probs=191.2
Q ss_pred CCCccCcHHHHHHHHHhh--cCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHH
Q psy15524 1 MNITQVTTVQQLSIQPIL--DGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFT 78 (930)
Q Consensus 1 ~g~~~l~~~Q~~ai~~~~--~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~ 78 (930)
+||.+|+|+|+++++.++ .|+|++++||||+|||++|++|+++.+...... ...++++|||+||++|+.|+++.++
T Consensus 39 ~g~~~~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~--~~~~~~~lvl~Ptr~La~Q~~~~~~ 116 (579)
T 3sqw_A 39 MEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFD--SQYMVKAVIVAPTRDLALQIEAEVK 116 (579)
T ss_dssp TTCSSCCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTS--STTSCCEEEECSSHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHHHHHHHHHHHHhcccc--ccCCCeEEEEcchHHHHHHHHHHHH
Confidence 689999999999999999 788999999999999999999999998774322 2345689999999999999999999
Q ss_pred HHhhh---cCCceeEEeeCCCchHHHHHHhc-CCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCcHHHH
Q psy15524 79 KLCKS---FTWIVPSWLTGGEKMKSEKARIR-KGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDI 154 (930)
Q Consensus 79 ~~~~~---~~~~~~~~~~g~~~~~~~~~~l~-~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~~~~~ 154 (930)
+++.. .....+....|+.....+...+. .+++|+|+||++|.+++.......++.+++|||||||++++++|++++
T Consensus 117 ~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~~gf~~~~ 196 (579)
T 3sqw_A 117 KIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRLLEIGFRDDL 196 (579)
T ss_dssp HHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHHHHTSTTTHHHH
T ss_pred HHHhhcccccceEEEEEECCccHHHHHHHHhcCCCCEEEECHHHHHHHHHhccccccccCCEEEEEChHHhhcCCCHHHH
Confidence 98642 23355667778877766665553 479999999999999887543455789999999999999999999999
Q ss_pred HHHHHHHhhcCCCceEEEEEeecCCCccccccccccccccccchhhhhhhhhhhccchhhHHHHHHHHhhcCcCceEEEE
Q psy15524 155 AEFLEILKKQKPQFQSILLSATLTPATCWCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLL 234 (930)
Q Consensus 155 ~~i~~~l~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~de~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~ 234 (930)
..++..++..... .....|+++|
T Consensus 197 ~~i~~~l~~~~~~---------------------------------------------------------~~~~~~~l~~ 219 (579)
T 3sqw_A 197 ETISGILNEKNSK---------------------------------------------------------SADNIKTLLF 219 (579)
T ss_dssp HHHHHHHHHHCSS---------------------------------------------------------CTTCCEEEEE
T ss_pred HHHHHHhhhhhcc---------------------------------------------------------cccCceEEEE
Confidence 9998888654310 0012255555
Q ss_pred ecccchHHHHhhhccccCCeeeccCCcccccCCCcccccCCCceeEEEEcCc-chhHHHHHHHHhhhccccccCCcceEE
Q psy15524 235 SATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPP-KLRLVALASFILGKCQNVNEDEESKML 313 (930)
Q Consensus 235 sat~~~~~~~l~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~k~~~l~~~l~~~~~~~~~~~~~~~i 313 (930)
|||+++.+..++..++.++..+........ .......+.+.+..++. ..+...+...+..... ....+.++|
T Consensus 220 SAT~~~~v~~~~~~~l~~~~~~~~~~~~~~-----~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~i 292 (579)
T 3sqw_A 220 SATLDDKVQKLANNIMNKKECLFLDTVDKN-----EPEAHERIDQSVVISEKFANSIFAAVEHIKKQIK--ERDSNYKAI 292 (579)
T ss_dssp ESSCCTHHHHHTTTTCCSSEEEEEESSCSS-----SCSSCTTEEEEEEEESSTTHHHHHHHHHHHHHHH--HTTTCCEEE
T ss_pred eccCChHHHHHHHHHcCCCceEEEeecCcc-----ccccccccceEEEEecchhhhHHHHHHHHHHHHh--hcCCCCcEE
Confidence 555555666666666666554433221110 01123456666665553 2333333333321101 124567999
Q ss_pred EEEecccchhhhHHHHhhh
Q psy15524 314 VFMATQDMADYHTELLSTK 332 (930)
Q Consensus 314 VF~~s~~~~~~l~~~L~~~ 332 (930)
|||+|+..|+.++..|+..
T Consensus 293 VF~~t~~~~~~l~~~L~~~ 311 (579)
T 3sqw_A 293 IFAPTVKFTSFLCSILKNE 311 (579)
T ss_dssp EECSSHHHHHHHHHHHHHH
T ss_pred EECCcHHHHHHHHHHHHHh
Confidence 9999999999999999865
|
| >3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=9.8e-28 Score=272.86 Aligned_cols=244 Identities=27% Similarity=0.451 Sum_probs=190.5
Q ss_pred CCCccCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHH
Q psy15524 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKL 80 (930)
Q Consensus 1 ~g~~~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~ 80 (930)
+||..|+++|+++++.++.|+|+++++|||+|||++|++|+++.+.. ...+.++||++|+++|+.|+.+.++++
T Consensus 58 ~~~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~------~~~~~~~lil~P~~~L~~q~~~~~~~~ 131 (414)
T 3eiq_A 58 YGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIEL------DLKATQALVLAPTRELAQQIQKVVMAL 131 (414)
T ss_dssp TTCCSCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHHHHHHHHCCT------TSCSCCEEEECSSHHHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHhHHHhCCCCEEEECCCCCcccHHHHHHHHHHHhh------cCCceeEEEEeChHHHHHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999988754 123567999999999999999999999
Q ss_pred hhhcCCceeEEeeCCCchHHHHHHhc-CCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCcHHHHHHHHH
Q psy15524 81 CKSFTWIVPSWLTGGEKMKSEKARIR-KGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLE 159 (930)
Q Consensus 81 ~~~~~~~~~~~~~g~~~~~~~~~~l~-~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~~~~~~~i~~ 159 (930)
+...+ ..+....|+.........+. .+++|+|+||+++.+.+.. ..+.+.++++||+||||++.++++...+..++.
T Consensus 132 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~-~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~ 209 (414)
T 3eiq_A 132 GDYMG-ASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNR-RYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQ 209 (414)
T ss_dssp GGGSC-CCEEECCCCTTHHHHHHHHTTTCCSEEEECHHHHHHHHHH-TSSCSTTCCEEEECSHHHHHHTTTHHHHHHHHT
T ss_pred hcccC-ceEEEEECCcchHHHHHHHhcCCCCEEEECHHHHHHHHHc-CCcccccCcEEEEECHHHhhccCcHHHHHHHHH
Confidence 87655 56666777777666665555 6789999999999998876 566788899999999999999998877766654
Q ss_pred HHhhcCCCceEEEEEeecCCCccccccccccccccccchhhhhhhhhhhccchhhHHHHHHHHhhcCcCceEEEEecccc
Q psy15524 160 ILKKQKPQFQSILLSATLTPATCWCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLT 239 (930)
Q Consensus 160 ~l~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~de~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~sat~~ 239 (930)
.++ ++. |++++|||++
T Consensus 210 ~~~---~~~-------------------------------------------------------------~~i~~SAT~~ 225 (414)
T 3eiq_A 210 KLN---SNT-------------------------------------------------------------QVVLLSATMP 225 (414)
T ss_dssp TSC---TTC-------------------------------------------------------------EEEEECSCCC
T ss_pred hCC---CCC-------------------------------------------------------------eEEEEEEecC
Confidence 432 233 4445555555
Q ss_pred hHHHHhhhccccCCeeeccCCcccccCCCcccccCCCceeEEEEcCc-chhHHHHHHHHhhhccccccCCcceEEEEEec
Q psy15524 240 PAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPP-KLRLVALASFILGKCQNVNEDEESKMLVFMAT 318 (930)
Q Consensus 240 ~~~~~l~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~k~~~l~~~l~~~~~~~~~~~~~~~iVF~~s 318 (930)
..+..+...++.++..+...... .....+.+.+..+.. ..+...+..++. .....++||||++
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~~~lvf~~~ 289 (414)
T 3eiq_A 226 SDVLEVTKKFMRDPIRILVKKEE---------LTLEGIRQFYINVEREEWKLDTLCDLYE-------TLTITQAVIFINT 289 (414)
T ss_dssp HHHHHHHTTTCSSCEEECCCCCC---------CCTTSCCEEEEECSSSTTHHHHHHHHHH-------SSCCSSCEEECSC
T ss_pred HHHHHHHHHHcCCCEEEEecCCc---------cCCCCceEEEEEeChHHhHHHHHHHHHH-------hCCCCcEEEEeCC
Confidence 55555666667777666544332 234556777776654 447888888873 3456799999999
Q ss_pred ccchhhhHHHHhhh
Q psy15524 319 QDMADYHTELLSTK 332 (930)
Q Consensus 319 ~~~~~~l~~~L~~~ 332 (930)
++.++.+++.|...
T Consensus 290 ~~~~~~l~~~l~~~ 303 (414)
T 3eiq_A 290 RRKVDWLTEKMHAR 303 (414)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999999764
|
| >1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=99.96 E-value=9e-28 Score=244.80 Aligned_cols=167 Identities=37% Similarity=0.577 Sum_probs=140.9
Q ss_pred CCCccCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHH
Q psy15524 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKL 80 (930)
Q Consensus 1 ~g~~~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~ 80 (930)
+||..|+|+|+++++.+++|+|+++++|||+|||++|++|++..+.. ...+.++||++|+++|+.|+++.++++
T Consensus 21 ~g~~~~~~~Q~~~i~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~------~~~~~~~lil~Pt~~L~~q~~~~~~~~ 94 (206)
T 1vec_A 21 MGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDL------KKDNIQAMVIVPTRELALQVSQICIQV 94 (206)
T ss_dssp TTCCSCCHHHHHHHHHHHTTCCEEEECCSSSTTHHHHHHHHHHHCCT------TSCSCCEEEECSCHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHccCCCEEEECCCCCchHHHHHHHHHHHhcc------cCCCeeEEEEeCcHHHHHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999988743 234567999999999999999999999
Q ss_pred hhhcCCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCcHHHHHHHHHH
Q psy15524 81 CKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEI 160 (930)
Q Consensus 81 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~~~~~~~i~~~ 160 (930)
....+...+..+.|+.....+...+..+++|+|+||+++.+.+.+ +...+.+++++|+||||++.+++|...+..++..
T Consensus 95 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~-~~~~~~~~~~lViDEah~~~~~~~~~~l~~i~~~ 173 (206)
T 1vec_A 95 SKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKK-GVAKVDHVQMIVLDEADKLLSQDFVQIMEDIILT 173 (206)
T ss_dssp TTTSSSCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHT-TCSCCTTCCEEEEETHHHHTSTTTHHHHHHHHHH
T ss_pred HhhcCCceEEEEeCCccHHHHHHhcCCCCCEEEeCHHHHHHHHHc-CCcCcccCCEEEEEChHHhHhhCcHHHHHHHHHh
Confidence 877656788888999888777777788899999999999998875 5566889999999999999999998888777765
Q ss_pred HhhcCCCceEEEEEeec
Q psy15524 161 LKKQKPQFQSILLSATL 177 (930)
Q Consensus 161 l~~~~~~~~~i~lSAT~ 177 (930)
++. +.|++++|||+
T Consensus 174 ~~~---~~~~l~~SAT~ 187 (206)
T 1vec_A 174 LPK---NRQILLYSATF 187 (206)
T ss_dssp SCT---TCEEEEEESCC
T ss_pred CCc---cceEEEEEeeC
Confidence 532 23444444444
|
| >1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A | Back alignment and structure |
|---|
Probab=99.96 E-value=1.1e-27 Score=270.25 Aligned_cols=246 Identities=24% Similarity=0.410 Sum_probs=189.6
Q ss_pred CCCccCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHH
Q psy15524 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKL 80 (930)
Q Consensus 1 ~g~~~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~ 80 (930)
+||+.|+|+|+++++.++.|+++++++|||+|||++|++|++..+.. ...+.++||++|+++|+.|+.+.++++
T Consensus 26 ~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~------~~~~~~~lil~P~~~L~~q~~~~~~~~ 99 (391)
T 1xti_A 26 CGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEP------VTGQVSVLVMCHTRELAFQISKEYERF 99 (391)
T ss_dssp HSCCSCCHHHHHHHHHHTTTCCEEEECSSCSSHHHHHHHHHHHHCCC------CTTCCCEEEECSCHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHhhcc------cCCCeeEEEECCCHHHHHHHHHHHHHH
Confidence 48999999999999999999999999999999999999999988743 123557999999999999999999999
Q ss_pred hhhcCCceeEEeeCCCchHHHHHHhcC-CCcEEEEChHHHHHHHhcCCCccCCCccEEEEccccccccc-CcHHHHHHHH
Q psy15524 81 CKSFTWIVPSWLTGGEKMKSEKARIRK-GISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQ-GYERDIAEFL 158 (930)
Q Consensus 81 ~~~~~~~~~~~~~g~~~~~~~~~~l~~-~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~-~~~~~~~~i~ 158 (930)
....+...+..+.|+.....+...+.. .++|+|+||+++...+.. ....+.++++||+||||++.++ ++...+..++
T Consensus 100 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~-~~~~~~~~~~vViDEaH~~~~~~~~~~~~~~~~ 178 (391)
T 1xti_A 100 SKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARN-KSLNLKHIKHFILDECDKMLEQLDMRRDVQEIF 178 (391)
T ss_dssp TTTCTTCCEEEECTTSCHHHHHHHHHHSCCSEEEECHHHHHHHHHT-TSSCCTTCSEEEECSHHHHTSSHHHHHHHHHHH
T ss_pred HhhCCCeEEEEEeCCCCHHHHHHHHhcCCCCEEEECHHHHHHHHHc-CCccccccCEEEEeCHHHHhhccchHHHHHHHH
Confidence 877656788888998887766665554 489999999999998875 5566889999999999999875 5655555544
Q ss_pred HHHhhcCCCceEEEEEeecCCCccccccccccccccccchhhhhhhhhhhccchhhHHHHHHHHhhcCcCceEEEEeccc
Q psy15524 159 EILKKQKPQFQSILLSATLTPATCWCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATL 238 (930)
Q Consensus 159 ~~l~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~de~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~sat~ 238 (930)
.. .++..|++++|||+++
T Consensus 179 ~~---~~~~~~~i~~SAT~~~----------------------------------------------------------- 196 (391)
T 1xti_A 179 RM---TPHEKQVMMFSATLSK----------------------------------------------------------- 196 (391)
T ss_dssp HT---SCSSSEEEEEESSCCS-----------------------------------------------------------
T ss_pred hh---CCCCceEEEEEeeCCH-----------------------------------------------------------
Confidence 32 2334567777777653
Q ss_pred chHHHHhhhccccCCeeeccCCcccccCCCcccccCCCceeEEEEcCcchhHHHHHHHHhhhccccccCCcceEEEEEec
Q psy15524 239 TPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMAT 318 (930)
Q Consensus 239 ~~~~~~l~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~iVF~~s 318 (930)
.+..+...++.++..+....... .....+.+.+..+....|...+..++. .....++||||++
T Consensus 197 --~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~l~~~l~-------~~~~~~~lvf~~~ 259 (391)
T 1xti_A 197 --EIRPVCRKFMQDPMEIFVDDETK--------LTLHGLQQYYVKLKDNEKNRKLFDLLD-------VLEFNQVVIFVKS 259 (391)
T ss_dssp --THHHHHHHHCSSCEEEECCCCCC--------CCCTTCEEEEEECCGGGHHHHHHHHHH-------HSCCSEEEEECSC
T ss_pred --HHHHHHHHHcCCCeEEEecCccc--------cCcccceEEEEEcCchhHHHHHHHHHH-------hcCCCcEEEEeCc
Confidence 23333334444555444332211 123557778888888888888888883 3466799999999
Q ss_pred ccchhhhHHHHhhh
Q psy15524 319 QDMADYHTELLSTK 332 (930)
Q Consensus 319 ~~~~~~l~~~L~~~ 332 (930)
++.++.++..|+..
T Consensus 260 ~~~~~~l~~~L~~~ 273 (391)
T 1xti_A 260 VQRCIALAQLLVEQ 273 (391)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhC
Confidence 99999999999864
|
| >1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A | Back alignment and structure |
|---|
Probab=99.95 E-value=1.5e-27 Score=269.97 Aligned_cols=243 Identities=27% Similarity=0.485 Sum_probs=188.3
Q ss_pred CCCccCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHH
Q psy15524 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKL 80 (930)
Q Consensus 1 ~g~~~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~ 80 (930)
+||+.|+|+|+++++.+++|+++++++|||+|||++|++|++..+.. ...+.++||++|+++|+.|+++.++++
T Consensus 39 ~g~~~~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~~~~~~~~~------~~~~~~~lil~P~~~L~~q~~~~~~~~ 112 (400)
T 1s2m_A 39 AGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKP------KLNKIQALIMVPTRELALQTSQVVRTL 112 (400)
T ss_dssp TTCCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHCCT------TSCSCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHHHHHHHHHhh------ccCCccEEEEcCCHHHHHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999988743 123567999999999999999999999
Q ss_pred hhhcCCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCcHHHHHHHHHH
Q psy15524 81 CKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEI 160 (930)
Q Consensus 81 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~~~~~~~i~~~ 160 (930)
+...+ +.+....|+.....+...+..+++|+|+||+++.+.+.. ....+.++++||+||||++.+.+|...+..++..
T Consensus 113 ~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~-~~~~~~~~~~vIiDEaH~~~~~~~~~~~~~i~~~ 190 (400)
T 1s2m_A 113 GKHCG-ISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASR-KVADLSDCSLFIMDEADKMLSRDFKTIIEQILSF 190 (400)
T ss_dssp TTTTT-CCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHT-TCSCCTTCCEEEEESHHHHSSHHHHHHHHHHHTT
T ss_pred hcccC-ceEEEEeCCcchHHHHHHhcCCCCEEEEchHHHHHHHHh-CCcccccCCEEEEeCchHhhhhchHHHHHHHHHh
Confidence 87654 667778888877777677777899999999999988765 5566889999999999999887777666555433
Q ss_pred HhhcCCCceEEEEEeecCCCccccccccccccccccchhhhhhhhhhhccchhhHHHHHHHHhhcCcCceEEEEecccch
Q psy15524 161 LKKQKPQFQSILLSATLTPATCWCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLTP 240 (930)
Q Consensus 161 l~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~de~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~sat~~~ 240 (930)
+ ++..+++++|||++ .
T Consensus 191 ~---~~~~~~i~lSAT~~-------------------------------------------------------------~ 206 (400)
T 1s2m_A 191 L---PPTHQSLLFSATFP-------------------------------------------------------------L 206 (400)
T ss_dssp S---CSSCEEEEEESCCC-------------------------------------------------------------H
T ss_pred C---CcCceEEEEEecCC-------------------------------------------------------------H
Confidence 3 23345666666653 3
Q ss_pred HHHHhhhccccCCeeeccCCcccccCCCcccccCCCceeEEEEcCcchhHHHHHHHHhhhccccccCCcceEEEEEeccc
Q psy15524 241 AVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQD 320 (930)
Q Consensus 241 ~~~~l~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~iVF~~s~~ 320 (930)
.+.......+.++..+..... .....+.+.+..+....|...+..++. .....++||||++++
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~k~~~l~~~~~-------~~~~~~~lVf~~~~~ 269 (400)
T 1s2m_A 207 TVKEFMVKHLHKPYEINLMEE----------LTLKGITQYYAFVEERQKLHCLNTLFS-------KLQINQAIIFCNSTN 269 (400)
T ss_dssp HHHHHHHHHCSSCEEESCCSS----------CBCTTEEEEEEECCGGGHHHHHHHHHH-------HSCCSEEEEECSSHH
T ss_pred HHHHHHHHHcCCCeEEEeccc----------cccCCceeEEEEechhhHHHHHHHHHh-------hcCCCcEEEEEecHH
Confidence 333333344444544433221 123557778888877888888888883 345679999999999
Q ss_pred chhhhHHHHhhh
Q psy15524 321 MADYHTELLSTK 332 (930)
Q Consensus 321 ~~~~l~~~L~~~ 332 (930)
.++.++..|+..
T Consensus 270 ~~~~l~~~L~~~ 281 (400)
T 1s2m_A 270 RVELLAKKITDL 281 (400)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc
Confidence 999999999764
|
| >1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=99.95 E-value=9.4e-28 Score=252.97 Aligned_cols=199 Identities=33% Similarity=0.458 Sum_probs=161.8
Q ss_pred CCCccCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCc---CCCCCCeEEEEEcccHHHHHHHHHHH
Q psy15524 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPK---ISRKDGIYAVIILPTRELALQTLEIF 77 (930)
Q Consensus 1 ~g~~~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~---~~~~~~~~~lvl~P~~~L~~q~~~~~ 77 (930)
+||..|+++|+++++.+++|+|+++++|||+|||++|++|+++.+...... .....++++||++||++|+.|+++++
T Consensus 41 ~g~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~ 120 (253)
T 1wrb_A 41 ASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAYPKCLILAPTRELAIQILSES 120 (253)
T ss_dssp TTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCBCCSEEEECSSHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhhccccccccccCCceEEEEECCHHHHHHHHHHH
Confidence 589999999999999999999999999999999999999999998753321 01123568999999999999999999
Q ss_pred HHHhhhcCCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCcHHHHHHH
Q psy15524 78 TKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEF 157 (930)
Q Consensus 78 ~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~~~~~~~i 157 (930)
++++...+ ..+..+.|+.....+...+..+++|+|+||+++.+.+.. ....+.++++||+||||++++++|+..+..+
T Consensus 121 ~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~-~~~~~~~~~~lViDEah~~~~~~~~~~~~~i 198 (253)
T 1wrb_A 121 QKFSLNTP-LRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEK-NKISLEFCKYIVLDEADRMLDMGFEPQIRKI 198 (253)
T ss_dssp HHHHTTSS-CCEEEECSSSCSHHHHHHHSSCCSEEEECHHHHHHHHHT-TSBCCTTCCEEEEETHHHHHHTTCHHHHHHH
T ss_pred HHHhccCC-ceEEEEECCCCHHHHHHHhCCCCCEEEECHHHHHHHHHc-CCCChhhCCEEEEeCHHHHHhCchHHHHHHH
Confidence 99886544 667778888888878778888899999999999998876 5567899999999999999999999988887
Q ss_pred HHHHhhcCCCceEEEEEeecCCCccccccccccccccccchhhhhhhhhhhccchhhHHHHHHHHhhcCcCceEEEEecc
Q psy15524 158 LEILKKQKPQFQSILLSATLTPATCWCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSAT 237 (930)
Q Consensus 158 ~~~l~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~de~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~sat 237 (930)
+..+.... ....|.++||||
T Consensus 199 ~~~~~~~~------------------------------------------------------------~~~~q~l~~SAT 218 (253)
T 1wrb_A 199 IEESNMPS------------------------------------------------------------GINRQTLMFSAT 218 (253)
T ss_dssp HHSSCCCC------------------------------------------------------------GGGCEEEEEESS
T ss_pred HhhccCCC------------------------------------------------------------CCCcEEEEEEEe
Confidence 76432110 002377888888
Q ss_pred cchHHHHhhhccccCCeeeccCCc
Q psy15524 238 LTPAVQRLAGMTLQNPIQIDAADS 261 (930)
Q Consensus 238 ~~~~~~~l~~~~l~~~~~i~~~~~ 261 (930)
++..+..++..++.+|..+.+...
T Consensus 219 ~~~~~~~~~~~~l~~~~~i~~~~~ 242 (253)
T 1wrb_A 219 FPKEIQKLAADFLYNYIFMTVGRV 242 (253)
T ss_dssp CCHHHHHHHHHHCSSCEEEEEC--
T ss_pred CCHHHHHHHHHHcCCCEEEEECCC
Confidence 888888888889988888866543
|
| >3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A | Back alignment and structure |
|---|
Probab=99.95 E-value=1.6e-27 Score=281.89 Aligned_cols=266 Identities=29% Similarity=0.434 Sum_probs=189.2
Q ss_pred CCCccCcHHHHHHHHHhh--cCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHH
Q psy15524 1 MNITQVTTVQQLSIQPIL--DGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFT 78 (930)
Q Consensus 1 ~g~~~l~~~Q~~ai~~~~--~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~ 78 (930)
+||..|+|+|+++++.++ .|+|++++||||||||++|++|+++.+...... ...++++|||+||++|+.|++++++
T Consensus 90 ~g~~~~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~--~~~~~~~lil~Ptr~La~Q~~~~~~ 167 (563)
T 3i5x_A 90 MEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFD--SQYMVKAVIVAPTRDLALQIEAEVK 167 (563)
T ss_dssp TCCSSCCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTS--STTSCCEEEECSSHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHHHHhcccc--ccCCeeEEEEcCcHHHHHHHHHHHH
Confidence 589999999999999999 678999999999999999999999999774432 2235679999999999999999999
Q ss_pred HHhhh---cCCceeEEeeCCCchHHHHHHh-cCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCcHHHH
Q psy15524 79 KLCKS---FTWIVPSWLTGGEKMKSEKARI-RKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDI 154 (930)
Q Consensus 79 ~~~~~---~~~~~~~~~~g~~~~~~~~~~l-~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~~~~~ 154 (930)
++... .....+..+.|+.....+...+ ..+++|+|+||+++.+++.+.....++++++|||||||++++++|++.+
T Consensus 168 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~~~f~~~~ 247 (563)
T 3i5x_A 168 KIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRLLEIGFRDDL 247 (563)
T ss_dssp HHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHHHHTSTTTHHHH
T ss_pred HHHhhccccCceeEEEEECCcCHHHHHHHHhcCCCCEEEECcHHHHHHHHhccccccccceEEEEeCHHHHhccchHHHH
Confidence 98653 2234566677887766665555 4579999999999999887543445788999999999999999999999
Q ss_pred HHHHHHHhhcCCCceEEEEEeecCCCccccccccccccccccchhhhhhhhhhhccchhhHHHHHHHHhhcCcCceEEEE
Q psy15524 155 AEFLEILKKQKPQFQSILLSATLTPATCWCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLL 234 (930)
Q Consensus 155 ~~i~~~l~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~de~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~ 234 (930)
..++..++..... ..+..|+++|
T Consensus 248 ~~i~~~l~~~~~~---------------------------------------------------------~~~~~~~l~~ 270 (563)
T 3i5x_A 248 ETISGILNEKNSK---------------------------------------------------------SADNIKTLLF 270 (563)
T ss_dssp HHHHHHHHHHCSS---------------------------------------------------------CTTCCEEEEE
T ss_pred HHHHHhhhhcccc---------------------------------------------------------CccCceEEEE
Confidence 9998888654310 0011255555
Q ss_pred ecccchHHHHhhhccccCCeeeccCCcccccCCCcccccCCCceeEEEEcCc-chhHHHHHHHHhhhccccccCCcceEE
Q psy15524 235 SATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPP-KLRLVALASFILGKCQNVNEDEESKML 313 (930)
Q Consensus 235 sat~~~~~~~l~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~k~~~l~~~l~~~~~~~~~~~~~~~i 313 (930)
|||++..+..++..++.++..+........ .......+.+.+...+. ..+...+...+..... ....+.++|
T Consensus 271 SAT~~~~v~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~i 343 (563)
T 3i5x_A 271 SATLDDKVQKLANNIMNKKECLFLDTVDKN-----EPEAHERIDQSVVISEKFANSIFAAVEHIKKQIK--ERDSNYKAI 343 (563)
T ss_dssp ESSCCTHHHHHTTTTCCSSEEEEEESSCSS-----SCSSCTTEEEEEEEESSTTHHHHHHHHHHHHHHH--HTTTCCEEE
T ss_pred EccCCHHHHHHHHHhcCCCceEEEeccCCC-----CccccccCceEEEECchhHhhHHHHHHHHHHHHh--hcCCCCcEE
Confidence 555555555666666666544433221110 01123446666665543 2333333333321101 124567999
Q ss_pred EEEecccchhhhHHHHhhh
Q psy15524 314 VFMATQDMADYHTELLSTK 332 (930)
Q Consensus 314 VF~~s~~~~~~l~~~L~~~ 332 (930)
|||+|++.|+.++..|+..
T Consensus 344 VF~~s~~~~~~l~~~L~~~ 362 (563)
T 3i5x_A 344 IFAPTVKFTSFLCSILKNE 362 (563)
T ss_dssp EECSCHHHHHHHHHHHHHH
T ss_pred EEcCcHHHHHHHHHHHHHh
Confidence 9999999999999999865
|
| >2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.1e-27 Score=248.27 Aligned_cols=154 Identities=25% Similarity=0.398 Sum_probs=132.3
Q ss_pred CCCccCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHH
Q psy15524 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKL 80 (930)
Q Consensus 1 ~g~~~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~ 80 (930)
+||..|+++|+++++.+++|+|+++++|||+|||++|++|++..+.. ...+.++||++||++|+.|++++++++
T Consensus 42 ~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~------~~~~~~~lil~Pt~~L~~q~~~~~~~~ 115 (230)
T 2oxc_A 42 AGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDSLVL------ENLSTQILILAPTREIAVQIHSVITAI 115 (230)
T ss_dssp TTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCT------TSCSCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHh------cCCCceEEEEeCCHHHHHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999988754 123567999999999999999999999
Q ss_pred hhhcCCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccC-cHHHHHHHHH
Q psy15524 81 CKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQG-YERDIAEFLE 159 (930)
Q Consensus 81 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~-~~~~~~~i~~ 159 (930)
+.....+.+..+.|+.....+...+ .+++|+|+||+++.+.+.. ..+.+.++++||+||||++++++ |...+..++.
T Consensus 116 ~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~Iiv~Tp~~l~~~~~~-~~~~~~~~~~lViDEah~~~~~~~~~~~~~~i~~ 193 (230)
T 2oxc_A 116 GIKMEGLECHVFIGGTPLSQDKTRL-KKCHIAVGSPGRIKQLIEL-DYLNPGSIRLFILDEADKLLEEGSFQEQINWIYS 193 (230)
T ss_dssp TTTSTTCCEEEECTTSCHHHHHHHT-TSCSEEEECHHHHHHHHHT-TSSCGGGCCEEEESSHHHHHSTTSSHHHHHHHHH
T ss_pred hcccCCceEEEEeCCCCHHHHHHhc-cCCCEEEECHHHHHHHHhc-CCcccccCCEEEeCCchHhhcCcchHHHHHHHHH
Confidence 8766457788888888776665554 4689999999999998875 55667899999999999999997 8888877776
Q ss_pred HHh
Q psy15524 160 ILK 162 (930)
Q Consensus 160 ~l~ 162 (930)
.++
T Consensus 194 ~~~ 196 (230)
T 2oxc_A 194 SLP 196 (230)
T ss_dssp HSC
T ss_pred hCC
Confidence 553
|
| >3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B | Back alignment and structure |
|---|
Probab=99.95 E-value=2.1e-27 Score=269.87 Aligned_cols=243 Identities=23% Similarity=0.391 Sum_probs=184.9
Q ss_pred CCCccCcHHHHHHHHHhhcC--CcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHH
Q psy15524 1 MNITQVTTVQQLSIQPILDG--GDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFT 78 (930)
Q Consensus 1 ~g~~~l~~~Q~~ai~~~~~g--~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~ 78 (930)
+||..|+|+|+++++.+++| +++++++|||+|||++|++|+++.+.. ...+.++||++|+++|+.|+++.++
T Consensus 43 ~g~~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~------~~~~~~~lil~P~~~L~~q~~~~~~ 116 (412)
T 3fht_A 43 MGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEP------ANKYPQCLCLSPTYELALQTGKVIE 116 (412)
T ss_dssp TTCCSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHHHHCCT------TSCSCCEEEECSSHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHHHHHHHHhhh------cCCCCCEEEECCCHHHHHHHHHHHH
Confidence 58999999999999999987 899999999999999999999988754 2335579999999999999999999
Q ss_pred HHhhhcCCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccc-cCcHHHHHHH
Q psy15524 79 KLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILD-QGYERDIAEF 157 (930)
Q Consensus 79 ~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~-~~~~~~~~~i 157 (930)
++....+...+....++....... ...++|+|+||+++.+++.+...+.+.++++|||||||++.+ +++...+..+
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~~~ 193 (412)
T 3fht_A 117 QMGKFYPELKLAYAVRGNKLERGQ---KISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRI 193 (412)
T ss_dssp HHTTTSTTCCEEEECTTCCCCTTC---CCCCSEEEECHHHHHHHHTTSCSSCGGGCCEEEEETHHHHHSTTTTHHHHHHH
T ss_pred HHHhhcccceEEEeecCcchhhhh---cCCCCEEEECchHHHHHHHhcCCcChhhCcEEEEeCHHHHhhcCCcHHHHHHH
Confidence 998776667777777776543221 345799999999999998776777789999999999999987 5676665555
Q ss_pred HHHHhhcCCCceEEEEEeecCCCccccccccccccccccchhhhhhhhhhhccchhhHHHHHHHHhhcCcCceEEEEecc
Q psy15524 158 LEILKKQKPQFQSILLSATLTPATCWCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSAT 237 (930)
Q Consensus 158 ~~~l~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~de~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~sat 237 (930)
...+ .+++|++++|||+
T Consensus 194 ~~~~---~~~~~~i~~SAT~------------------------------------------------------------ 210 (412)
T 3fht_A 194 QRML---PRNCQMLLFSATF------------------------------------------------------------ 210 (412)
T ss_dssp HHTS---CTTCEEEEEESCC------------------------------------------------------------
T ss_pred HhhC---CCCceEEEEEeec------------------------------------------------------------
Confidence 4433 2334555555555
Q ss_pred cchHHHHhhhccccCCeeeccCCcccccCCCcccccCCCceeEEEEcCc-chhHHHHHHHHhhhccccccCCcceEEEEE
Q psy15524 238 LTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPP-KLRLVALASFILGKCQNVNEDEESKMLVFM 316 (930)
Q Consensus 238 ~~~~~~~l~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~k~~~l~~~l~~~~~~~~~~~~~~~iVF~ 316 (930)
+..+..+...++.++..+...... .....+.+.+..+.. ..+...+..++. .....++||||
T Consensus 211 -~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~~~lvf~ 273 (412)
T 3fht_A 211 -EDSVWKFAQKVVPDPNVIKLKREE---------ETLDTIKQYYVLCSSRDEKFQALCNLYG-------AITIAQAMIFC 273 (412)
T ss_dssp -CHHHHHHHHHHSSSCEEECCCGGG---------SSCTTEEEEEEECSSHHHHHHHHHHHHH-------HHSSSEEEEEC
T ss_pred -CHHHHHHHHHhcCCCeEEeecccc---------ccccCceEEEEEcCChHHHHHHHHHHHh-------hcCCCCEEEEe
Confidence 444445555556666655544332 234567777776654 567777777773 33567999999
Q ss_pred ecccchhhhHHHHhhh
Q psy15524 317 ATQDMADYHTELLSTK 332 (930)
Q Consensus 317 ~s~~~~~~l~~~L~~~ 332 (930)
++++.++.++..|+..
T Consensus 274 ~~~~~~~~l~~~L~~~ 289 (412)
T 3fht_A 274 HTRKTASWLAAELSKE 289 (412)
T ss_dssp SSHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHhC
Confidence 9999999999999864
|
| >3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.9e-28 Score=282.23 Aligned_cols=243 Identities=23% Similarity=0.392 Sum_probs=142.4
Q ss_pred CCCccCcHHHHHHHHHhhcC--CcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHH
Q psy15524 1 MNITQVTTVQQLSIQPILDG--GDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFT 78 (930)
Q Consensus 1 ~g~~~l~~~Q~~ai~~~~~g--~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~ 78 (930)
+||..|+|+|+++++.+++| ++++++||||||||++|++|++..+.. ...++++|||+||++|+.|+++.++
T Consensus 110 ~g~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l~~------~~~~~~~lil~Pt~~La~Q~~~~~~ 183 (479)
T 3fmp_B 110 MGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEP------ANKYPQCLCLSPTYELALQTGKVIE 183 (479)
T ss_dssp TTCCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTCCT------TSCSCCEEEECSSHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHHHHhh------cCCCCcEEEEeChHHHHHHHHHHHH
Confidence 68999999999999999987 899999999999999999999987754 2235579999999999999999999
Q ss_pred HHhhhcCCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccc-cCcHHHHHHH
Q psy15524 79 KLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILD-QGYERDIAEF 157 (930)
Q Consensus 79 ~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~-~~~~~~~~~i 157 (930)
++........+....++...... ....++|+|+||+++.+++.+...+.+.++++|||||+|++++ +++...+..+
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~~i 260 (479)
T 3fmp_B 184 QMGKFYPELKLAYAVRGNKLERG---QKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRI 260 (479)
T ss_dssp HHHTTSTTCCEEEESTTCCCCTT---CCCCCSEEEECHHHHHHHHTTSCCCCGGGCCEEEECCHHHHHTSTTHHHHHHHH
T ss_pred HHHhhCCCceEEEEeCCcccccc---ccCCCCEEEECchHHHHHHHhcCCcCcccCCEEEEECHHHHhhcCCcHHHHHHH
Confidence 99877666677777776654322 1345799999999999999776777889999999999999987 5666655544
Q ss_pred HHHHhhcCCCceEEEEEeecCCCccccccccccccccccchhhhhhhhhhhccchhhHHHHHHHHhhcCcCceEEEEecc
Q psy15524 158 LEILKKQKPQFQSILLSATLTPATCWCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSAT 237 (930)
Q Consensus 158 ~~~l~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~de~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~sat 237 (930)
...+ .+++|++++|||+
T Consensus 261 ~~~~---~~~~~~i~~SAT~------------------------------------------------------------ 277 (479)
T 3fmp_B 261 QRML---PRNCQMLLFSATF------------------------------------------------------------ 277 (479)
T ss_dssp HTTS---CTTSEEEEEESCC------------------------------------------------------------
T ss_pred HhhC---CccceEEEEeCCC------------------------------------------------------------
Confidence 4332 2334555555554
Q ss_pred cchHHHHhhhccccCCeeeccCCcccccCCCcccccCCCceeEEEEcCc-chhHHHHHHHHhhhccccccCCcceEEEEE
Q psy15524 238 LTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPP-KLRLVALASFILGKCQNVNEDEESKMLVFM 316 (930)
Q Consensus 238 ~~~~~~~l~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~k~~~l~~~l~~~~~~~~~~~~~~~iVF~ 316 (930)
+..+..++..++.++..+...... .....+.+.+..+.. ..+...+..++ ......++||||
T Consensus 278 -~~~~~~~~~~~~~~~~~i~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~l~~~~-------~~~~~~~~lvF~ 340 (479)
T 3fmp_B 278 -EDSVWKFAQKVVPDPNVIKLKREE---------ETLDTIKQYYVLCSSRDEKFQALCNLY-------GAITIAQAMIFC 340 (479)
T ss_dssp -CHHHHHHHHHHSSSEEEEEEC----------------------------------------------------------
T ss_pred -CHHHHHHHHHHcCCCeEEeccccc---------cCcCCceEEEEEeCCHHHHHHHHHHHH-------hhccCCceEEEe
Confidence 444445555556666555444332 123456666666554 45666666666 334567999999
Q ss_pred ecccchhhhHHHHhhh
Q psy15524 317 ATQDMADYHTELLSTK 332 (930)
Q Consensus 317 ~s~~~~~~l~~~L~~~ 332 (930)
++++.|+.++..|...
T Consensus 341 ~s~~~~~~l~~~L~~~ 356 (479)
T 3fmp_B 341 HTRKTASWLAAELSKE 356 (479)
T ss_dssp ----------------
T ss_pred CcHHHHHHHHHHHHhC
Confidence 9999999999999864
|
| >2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.8e-27 Score=246.59 Aligned_cols=191 Identities=41% Similarity=0.622 Sum_probs=154.9
Q ss_pred CCCccCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHH
Q psy15524 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKL 80 (930)
Q Consensus 1 ~g~~~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~ 80 (930)
+||..|+++|+++++.+++|+|+++++|||+|||++|++|+++.+...... ...+.++||++||++|+.|+++.++++
T Consensus 43 ~~~~~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~--~~~~~~~lil~Pt~~L~~q~~~~~~~~ 120 (236)
T 2pl3_A 43 AQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQWT--STDGLGVLIISPTRELAYQTFEVLRKV 120 (236)
T ss_dssp TTCCBCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHTTCC--GGGCCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHHHHHHHHHHHhhccc--ccCCceEEEEeCCHHHHHHHHHHHHHH
Confidence 589999999999999999999999999999999999999999988653221 124667999999999999999999998
Q ss_pred hhhcCCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCcHHHHHHHHHH
Q psy15524 81 CKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEI 160 (930)
Q Consensus 81 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~~~~~~~i~~~ 160 (930)
+...+ ..+..+.|+.....+...+ .+++|+|+||+++.+.+.....+.+.++++||+||||++.+++|...+..++..
T Consensus 121 ~~~~~-~~~~~~~g~~~~~~~~~~~-~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~ 198 (236)
T 2pl3_A 121 GKNHD-FSAGLIIGGKDLKHEAERI-NNINILVCTPGRLLQHMDETVSFHATDLQMLVLDEADRILDMGFADTMNAVIEN 198 (236)
T ss_dssp TTTSS-CCEEEECCC--CHHHHHHH-TTCSEEEECHHHHHHHHHHCSSCCCTTCCEEEETTHHHHHHTTTHHHHHHHHHT
T ss_pred hCCCC-eeEEEEECCCCHHHHHHhC-CCCCEEEECHHHHHHHHHhcCCcccccccEEEEeChHHHhcCCcHHHHHHHHHh
Confidence 76544 6677788887766655555 578999999999999887655667889999999999999999998887776655
Q ss_pred HhhcCCCceEEEEEeecCCCccccccccccccccccchhhhhhhhhhhccchhhHHHHHHHHhhcCcCceEEEEecccch
Q psy15524 161 LKKQKPQFQSILLSATLTPATCWCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLTP 240 (930)
Q Consensus 161 l~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~de~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~sat~~~ 240 (930)
++. . .|.++||||+++
T Consensus 199 ~~~---~-------------------------------------------------------------~~~l~~SAT~~~ 214 (236)
T 2pl3_A 199 LPK---K-------------------------------------------------------------RQTLLFSATQTK 214 (236)
T ss_dssp SCT---T-------------------------------------------------------------SEEEEEESSCCH
T ss_pred CCC---C-------------------------------------------------------------CeEEEEEeeCCH
Confidence 432 1 266777777777
Q ss_pred HHHHhhhccccCCeeeccC
Q psy15524 241 AVQRLAGMTLQNPIQIDAA 259 (930)
Q Consensus 241 ~~~~l~~~~l~~~~~i~~~ 259 (930)
.+..+++.++.+|..+.+.
T Consensus 215 ~~~~~~~~~~~~p~~i~~~ 233 (236)
T 2pl3_A 215 SVKDLARLSLKNPEYVWVH 233 (236)
T ss_dssp HHHHHHHHSCSSCEEEECC
T ss_pred HHHHHHHHhCCCCEEEEeC
Confidence 7888888888888877654
|
| >1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=99.95 E-value=7.4e-28 Score=247.78 Aligned_cols=167 Identities=33% Similarity=0.502 Sum_probs=136.8
Q ss_pred CCCccCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHH
Q psy15524 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKL 80 (930)
Q Consensus 1 ~g~~~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~ 80 (930)
+||..|+++|+++++.+++|+|+++++|||+|||++|++|+++.+.. ...+.++||++||++|+.|+++.++++
T Consensus 22 ~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~------~~~~~~~lil~Pt~~L~~q~~~~~~~~ 95 (219)
T 1q0u_A 22 LRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKIKP------ERAEVQAVITAPTRELATQIYHETLKI 95 (219)
T ss_dssp TTCCSCCHHHHHHHHHHHHTCCEEEECCSSHHHHHHHHHHHHHHCCT------TSCSCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHh------CcCCceEEEEcCcHHHHHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999988754 223567999999999999999999999
Q ss_pred hhhcC---CceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCcHHHHHHH
Q psy15524 81 CKSFT---WIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEF 157 (930)
Q Consensus 81 ~~~~~---~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~~~~~~~i 157 (930)
....+ ...+..+.|+.........+..+++|+|+||+++.+.+.. +...+.+++++||||||++.+++|...+..+
T Consensus 96 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~-~~~~~~~~~~lViDEah~~~~~~~~~~l~~i 174 (219)
T 1q0u_A 96 TKFCPKDRMIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIRE-QALDVHTAHILVVDEADLMLDMGFITDVDQI 174 (219)
T ss_dssp HTTSCGGGCCCEEEECCCSHHHHTTCCCSSCCSEEEECHHHHHHHHHT-TCCCGGGCCEEEECSHHHHHHTTCHHHHHHH
T ss_pred hhhcccccceEEEEEeCCCCHHHHHHHcCCCCCEEEeCHHHHHHHHHc-CCCCcCcceEEEEcCchHHhhhChHHHHHHH
Confidence 87553 3667778888776665555666799999999999998875 5566889999999999999999998887777
Q ss_pred HHHHhhcCCCceEEEEEeec
Q psy15524 158 LEILKKQKPQFQSILLSATL 177 (930)
Q Consensus 158 ~~~l~~~~~~~~~i~lSAT~ 177 (930)
+..++ +++|++++|||+
T Consensus 175 ~~~~~---~~~~~l~~SAT~ 191 (219)
T 1q0u_A 175 AARMP---KDLQMLVFSATI 191 (219)
T ss_dssp HHTSC---TTCEEEEEESCC
T ss_pred HHhCC---cccEEEEEecCC
Confidence 65543 233444444444
|
| >3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.5e-27 Score=248.49 Aligned_cols=186 Identities=32% Similarity=0.493 Sum_probs=144.1
Q ss_pred CCCccCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHH
Q psy15524 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKL 80 (930)
Q Consensus 1 ~g~~~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~ 80 (930)
+||..|+++|+++++.+++|+|+++++|||+|||++|++|+++.+.. ...+.++||++||++|+.|+++.++++
T Consensus 48 ~g~~~~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~~l~~l~~l~~------~~~~~~~lil~Pt~~L~~q~~~~~~~~ 121 (237)
T 3bor_A 48 YGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEI------EFKETQALVLAPTRELAQQIQKVILAL 121 (237)
T ss_dssp HTCCSCCHHHHHHHHHHHTTCCEEECCCSSHHHHHHHHHHHHHHCCT------TSCSCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHh------cCCCceEEEEECcHHHHHHHHHHHHHH
Confidence 48999999999999999999999999999999999999999988753 123567999999999999999999998
Q ss_pred hhhcCCceeEEeeCCCchHHHHHHhcCC-CcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCcHHHHHHHHH
Q psy15524 81 CKSFTWIVPSWLTGGEKMKSEKARIRKG-ISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLE 159 (930)
Q Consensus 81 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~-~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~~~~~~~i~~ 159 (930)
+...+ ..+....|+.....+...+..+ ++|+|+||+++.+.+.. ..+.+.++++||+||||++.+++|...+..++.
T Consensus 122 ~~~~~-~~~~~~~g~~~~~~~~~~l~~~~~~Ilv~Tp~~l~~~l~~-~~~~~~~~~~lViDEah~~~~~~~~~~l~~i~~ 199 (237)
T 3bor_A 122 GDYMG-ATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNR-RYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQ 199 (237)
T ss_dssp TTTTT-CCEEEECC-------------CCCSEEEECHHHHHHHHHT-TSSCSTTCCEEEEESHHHHHHTTCHHHHHHHHH
T ss_pred hhhcC-ceEEEEECCCchHHHHHHHhcCCCCEEEECHHHHHHHHHh-CCcCcccCcEEEECCchHhhccCcHHHHHHHHH
Confidence 86554 5566677777766665555555 89999999999998875 556788999999999999999999888777665
Q ss_pred HHhhcCCCceEEEEEeecCCCccccccccccccccccchhhhhhhhhhhccchhhHHHHHHHHhhcCcCceEEEEecccc
Q psy15524 160 ILKKQKPQFQSILLSATLTPATCWCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLT 239 (930)
Q Consensus 160 ~l~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~de~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~sat~~ 239 (930)
.++. . .|++++|||++
T Consensus 200 ~~~~---~-------------------------------------------------------------~~~i~~SAT~~ 215 (237)
T 3bor_A 200 KLNT---S-------------------------------------------------------------IQVVLLSATMP 215 (237)
T ss_dssp HSCT---T-------------------------------------------------------------CEEEEECSSCC
T ss_pred hCCC---C-------------------------------------------------------------CeEEEEEEecC
Confidence 5421 1 26677777777
Q ss_pred hHHHHhhhccccCCeeecc
Q psy15524 240 PAVQRLAGMTLQNPIQIDA 258 (930)
Q Consensus 240 ~~~~~l~~~~l~~~~~i~~ 258 (930)
+.+..++..++.+|..+.+
T Consensus 216 ~~~~~~~~~~l~~p~~i~v 234 (237)
T 3bor_A 216 TDVLEVTKKFMRDPIRILV 234 (237)
T ss_dssp HHHHHHHHHHCSSCEEEC-
T ss_pred HHHHHHHHHHCCCCEEEEe
Confidence 7778888888888877754
|
| >1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=2.3e-27 Score=267.91 Aligned_cols=243 Identities=27% Similarity=0.475 Sum_probs=145.2
Q ss_pred CCCccCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHH
Q psy15524 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKL 80 (930)
Q Consensus 1 ~g~~~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~ 80 (930)
+||..|+|+|+++++.+++|+++++++|||+|||++|++|++..+.. ...+.++||++|+++|+.|+.+.+.++
T Consensus 39 ~g~~~~~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~l~~------~~~~~~~lil~P~~~L~~q~~~~~~~~ 112 (394)
T 1fuu_A 39 YGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDT------SVKAPQALMLAPTRELALQIQKVVMAL 112 (394)
T ss_dssp HTCCSCCHHHHHHHHHHHHTCCEEECCCSSHHHHHHHHHHHHHHCCT------TCCSCCEEEECSSHHHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhhc------cCCCCCEEEEcCCHHHHHHHHHHHHHH
Confidence 48999999999999999999999999999999999999999988754 123567999999999999999999998
Q ss_pred hhhcCCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCcHHHHHHHHHH
Q psy15524 81 CKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEI 160 (930)
Q Consensus 81 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~~~~~~~i~~~ 160 (930)
....+ ..+..+.|+.........+. +++|+|+||+++.+.+.. ....+.++++||+||||++.++++...+..++..
T Consensus 113 ~~~~~-~~~~~~~g~~~~~~~~~~~~-~~~i~v~T~~~l~~~~~~-~~~~~~~~~~vIiDEah~~~~~~~~~~~~~~~~~ 189 (394)
T 1fuu_A 113 AFHMD-IKVHACIGGTSFVEDAEGLR-DAQIVVGTPGRVFDNIQR-RRFRTDKIKMFILDEADEMLSSGFKEQIYQIFTL 189 (394)
T ss_dssp TTTSC-CCEEEECSSCCHHHHHHHHH-HCSEEEECHHHHHHHHHT-TSSCCTTCCEEEEETHHHHHHTTCHHHHHHHHHH
T ss_pred hccCC-eeEEEEeCCCchHHHHhhcC-CCCEEEECHHHHHHHHHh-CCcchhhCcEEEEEChHHhhCCCcHHHHHHHHHh
Confidence 76654 66777888877665555444 589999999999998876 5566789999999999999999998887777665
Q ss_pred HhhcCCCceEEEEEeecCCCccccccccccccccccchhhhhhhhhhhccchhhHHHHHHHHhhcCcCceEEEEecccch
Q psy15524 161 LKKQKPQFQSILLSATLTPATCWCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLTP 240 (930)
Q Consensus 161 l~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~de~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~sat~~~ 240 (930)
++ +..+++++|||+++
T Consensus 190 ~~---~~~~~i~~SAT~~~------------------------------------------------------------- 205 (394)
T 1fuu_A 190 LP---PTTQVVLLSATMPN------------------------------------------------------------- 205 (394)
T ss_dssp SC---TTCEEEEECSSCCH-------------------------------------------------------------
T ss_pred CC---CCceEEEEEEecCH-------------------------------------------------------------
Confidence 43 34567777777642
Q ss_pred HHHHhhhccccCCeeeccCCcccccCCCcccccCCCceeEEEEcCcc-hhHHHHHHHHhhhccccccCCcceEEEEEecc
Q psy15524 241 AVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPK-LRLVALASFILGKCQNVNEDEESKMLVFMATQ 319 (930)
Q Consensus 241 ~~~~l~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~k~~~l~~~l~~~~~~~~~~~~~~~iVF~~s~ 319 (930)
.+..+...++.++..+...... ..+..+.+.+..+... .+...+..++ ......++||||+++
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~l~~~~-------~~~~~~~~lVf~~~~ 269 (394)
T 1fuu_A 206 DVLEVTTKFMRNPVRILVKKDE---------LTLEGIKQFYVNVEEEEYKYECLTDLY-------DSISVTQAVIFCNTR 269 (394)
T ss_dssp HHHHHHHHHCCSCEEEEECC------------------------------------------------------------
T ss_pred HHHHHHHHhcCCCeEEEecCcc---------ccCCCceEEEEEcCchhhHHHHHHHHH-------hcCCCCcEEEEECCH
Confidence 2223333334444443332211 1123344444444333 3566666666 233567999999999
Q ss_pred cchhhhHHHHhhh
Q psy15524 320 DMADYHTELLSTK 332 (930)
Q Consensus 320 ~~~~~l~~~L~~~ 332 (930)
+.++.+++.|+..
T Consensus 270 ~~~~~l~~~L~~~ 282 (394)
T 1fuu_A 270 RKVEELTTKLRND 282 (394)
T ss_dssp -------------
T ss_pred HHHHHHHHHHHHc
Confidence 9999999999764
|
| >1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=99.95 E-value=1.4e-25 Score=266.78 Aligned_cols=327 Identities=16% Similarity=0.216 Sum_probs=213.5
Q ss_pred CCCHHHHHhHHhhh---------cCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHH
Q psy15524 414 QVTTVQQLSIQPIL---------DGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLE 484 (930)
Q Consensus 414 ~~~~iQ~~~i~~il---------~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~ 484 (930)
.++|+|.+++..+. .+...|+..+||+|||+.++..+...+... +. .+....++|||+|+ +|+.||.+
T Consensus 55 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~-~~-~~p~~~~~LiV~P~-sll~qW~~ 131 (644)
T 1z3i_X 55 VLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQS-PD-CKPEIDKVIVVSPS-SLVRNWYN 131 (644)
T ss_dssp TCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCC-TT-SSCSCSCEEEEECH-HHHHHHHH
T ss_pred cccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHHHHhC-cc-ccCCCCcEEEEecH-HHHHHHHH
Confidence 68999999998874 345699999999999999777666554431 11 11124569999996 89999999
Q ss_pred HHHHhhccCCCcceEEEeCCCchHHH--HHHHhc------CCcEEEECchhHHHhhhccCCcccccceEEEEecchhhhh
Q psy15524 485 IFTKLCKSFTWIVPSWLTGGEKMKSE--KARIRK------GISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILD 556 (930)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~gg~~~~~~--~~~~~~------~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~l~~ 556 (930)
++.+++.. ...+..+.||...... ...... ..+|+|+|++.+..... .+....+++||+||||++-+
T Consensus 132 E~~~~~~~--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~---~l~~~~~~~vI~DEaH~ikn 206 (644)
T 1z3i_X 132 EVGKWLGG--RVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHAE---VLHKGKVGLVICDEGHRLKN 206 (644)
T ss_dssp HHHHHHGG--GCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHTT---TTTTSCCCEEEETTGGGCCT
T ss_pred HHHHHcCC--CeeEEEEeCCCHHHHHHHHHHHHHhcCCCCCCcEEEeeHHHHHhhHH---HhhcCCccEEEEECceecCC
Confidence 99998754 1233445555432211 111111 37899999999876543 23345789999999999965
Q ss_pred cCcHHHHHHHHHHHhhcCccceEEEEccccCHH-------HHH------------HHhhhc-------------------
Q psy15524 557 QGYERDIAEFLEILKKQKPQFQSILLSATLTPA-------VQR------------LAGMTL------------------- 598 (930)
Q Consensus 557 ~g~~~~l~~i~~~l~~~~~~~q~vl~SAT~~~~-------~~~------------l~~~~~------------------- 598 (930)
.. ......+..+. ....+++|||+-.+ +-+ +...+.
T Consensus 207 ~~--~~~~~al~~l~----~~~rl~LTgTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~ 280 (644)
T 1z3i_X 207 SD--NQTYLALNSMN----AQRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKKRFEIPILKGRDADASDKDRAAG 280 (644)
T ss_dssp TC--HHHHHHHHHHC----CSEEEEECSSCSGGGGGGCHHHHHHHHHHHHCCHHHHHHHTHHHHHHHHSTTCCSHHHHHH
T ss_pred hh--hHHHHHHHhcc----cCcEEEEecCcccCCHHHHHHHHHhhCCCcCCCHHHHHHhhcchhhhcCCcCCCHHHHHHH
Confidence 43 22233333443 34679999997421 000 000000
Q ss_pred ----------CCCEEEEccCCCCcccCccceecCCCceEEEEEcC-----------------------------------
Q psy15524 599 ----------QNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTP----------------------------------- 633 (930)
Q Consensus 599 ----------~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------------- 633 (930)
-.|..+...... .....|...........
T Consensus 281 ~~~~~~L~~~l~~~~lRR~k~~------v~~~LP~k~~~~v~~~ls~~q~~lY~~~~~~~~~~~~~~~g~~~~~~l~~l~ 354 (644)
T 1z3i_X 281 EQKLQELISIVNRCLIRRTSDI------LSKYLPVKIEQVVCCNLTPLQKELYKLFLKQAKPVESLQTGKISVSSLSSIT 354 (644)
T ss_dssp HHHHHHHHHHHHHHEECCCGGG------GGGTSCCEEEEEEEECCCHHHHHHHHHHHHHHCGGGSSCTTCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHh------HhhhCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHhcCccchhHHHHHH
Confidence 000001000000 00011211111111100
Q ss_pred ------------------------------------------chhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHH
Q psy15524 634 ------------------------------------------PKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMAD 671 (930)
Q Consensus 634 ------------------------------------------~~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~ 671 (930)
...|+..+..++.... ...+.++|||+.+...++
T Consensus 355 ~Lrk~c~hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~l~~ll~~~~----~~~~~k~lIFs~~~~~~~ 430 (644)
T 1z3i_X 355 SLKKLCNHPALIYEKCLTGEEGFDGALDLFPQNYSTKAVEPQLSGKMLVLDYILAMTR----TTTSDKVVLVSNYTQTLD 430 (644)
T ss_dssp HHHHHHHCTHHHHHHHHHTCTTCTTGGGTSCSSCCSSSCCGGGSHHHHHHHHHHHHHH----HHCCCEEEEEESCHHHHH
T ss_pred HHHHHhCCHHHHHHHHhcccchhhhHHhhccccccccccCcccChHHHHHHHHHHHHh----hcCCCEEEEEEccHHHHH
Confidence 1112222222222110 012679999999999999
Q ss_pred HHHHHHhhhcCCCceEEEecCCCCHHHHHHHHHHhhcCCCc---EEEeccccccccCCCCccEEEEecCCCChhhHHhhh
Q psy15524 672 YHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSVKSG---VLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRV 748 (930)
Q Consensus 672 ~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~v~~~F~~~~~~---vLv~T~~~~~GlDip~v~~VI~~~~p~s~~~y~qr~ 748 (930)
.+.+.|... ++.+..+||++++.+|..++++|+++... +|++|+++++|+|++++++||++|+|+++..|.|++
T Consensus 431 ~l~~~l~~~---g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~g~Glnl~~a~~Vi~~d~~wnp~~~~Qa~ 507 (644)
T 1z3i_X 431 LFEKLCRNR---RYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAM 507 (644)
T ss_dssp HHHHHHHHH---TCCEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCCCTTEEEEEECSCCSSHHHHHHHH
T ss_pred HHHHHHHHC---CCCEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEecccccCCcccccCCEEEEECCCCCccHHHHHH
Confidence 999999875 78899999999999999999999998764 899999999999999999999999999999999999
Q ss_pred cccccCCCCceEEE--EeCcc
Q psy15524 749 GRTARVGHEGSSLL--FLIPS 767 (930)
Q Consensus 749 GRagR~g~~g~~~~--~~~~~ 767 (930)
||++|.|+...+.+ |+...
T Consensus 508 gR~~R~Gq~~~v~v~~lv~~~ 528 (644)
T 1z3i_X 508 ARVWRDGQKKTCYIYRLLSTG 528 (644)
T ss_dssp TTSSSTTCCSCEEEEEEEETT
T ss_pred HhhhhcCCCCceEEEEEEECC
Confidence 99999998765544 44444
|
| >2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A | Back alignment and structure |
|---|
Probab=99.94 E-value=1.1e-26 Score=237.11 Aligned_cols=154 Identities=35% Similarity=0.551 Sum_probs=131.9
Q ss_pred CCCccCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHH
Q psy15524 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKL 80 (930)
Q Consensus 1 ~g~~~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~ 80 (930)
+||..|+|+|+++++.+++|+|+++++|||+|||++|++|+++.+..... ...+.++||++|+++|+.|+++.++++
T Consensus 19 ~~~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~l~~~~~---~~~~~~~lil~P~~~L~~q~~~~~~~~ 95 (207)
T 2gxq_A 19 RGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAERLAPSQE---RGRKPRALVLTPTRELALQVASELTAV 95 (207)
T ss_dssp TTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCCC---TTCCCSEEEECSSHHHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHcCCCCEEEECCCCChHHHHHHHHHHHHHhhccc---cCCCCcEEEEECCHHHHHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999988754211 234677999999999999999999998
Q ss_pred hhhcCCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCcHHHHHHHHHH
Q psy15524 81 CKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEI 160 (930)
Q Consensus 81 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~~~~~~~i~~~ 160 (930)
+.. ..+..+.|+.....+...+..+++|+|+||+++.+.+.. ....+.+++++|+||||++.+++|...+..++..
T Consensus 96 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~-~~~~~~~~~~iViDEah~~~~~~~~~~~~~i~~~ 171 (207)
T 2gxq_A 96 APH---LKVVAVYGGTGYGKQKEALLRGADAVVATPGRALDYLRQ-GVLDLSRVEVAVLDEADEMLSMGFEEEVEALLSA 171 (207)
T ss_dssp CTT---SCEEEECSSSCSHHHHHHHHHCCSEEEECHHHHHHHHHH-TSSCCTTCSEEEEESHHHHHHTTCHHHHHHHHHT
T ss_pred hhc---ceEEEEECCCChHHHHHHhhCCCCEEEECHHHHHHHHHc-CCcchhhceEEEEEChhHhhccchHHHHHHHHHh
Confidence 754 566778888887777777777899999999999998876 5667899999999999999999998877776544
Q ss_pred H
Q psy15524 161 L 161 (930)
Q Consensus 161 l 161 (930)
+
T Consensus 172 ~ 172 (207)
T 2gxq_A 172 T 172 (207)
T ss_dssp S
T ss_pred C
Confidence 3
|
| >1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A | Back alignment and structure |
|---|
Probab=99.94 E-value=1e-26 Score=240.41 Aligned_cols=152 Identities=31% Similarity=0.568 Sum_probs=123.0
Q ss_pred CCCccCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHH
Q psy15524 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKL 80 (930)
Q Consensus 1 ~g~~~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~ 80 (930)
+||..|+++|+++++.+++|+|+++++|||+|||++|++|+++.+.. ...+.++||++|+++|+.|+++.++++
T Consensus 32 ~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~~~~~l~~l~~------~~~~~~~lil~Pt~~L~~q~~~~~~~~ 105 (224)
T 1qde_A 32 YGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDT------SVKAPQALMLAPTRELALQIQKVVMAL 105 (224)
T ss_dssp HTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCT------TCCSCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHhc------cCCCceEEEEECCHHHHHHHHHHHHHH
Confidence 48999999999999999999999999999999999999999988754 223567999999999999999999998
Q ss_pred hhhcCCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCcHHHHHHHHHH
Q psy15524 81 CKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEI 160 (930)
Q Consensus 81 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~~~~~~~i~~~ 160 (930)
+...+ ..+..+.|+.....+...+.. ++|+|+||+++.+.+.+ ....+.++++||+||||++.+++|...+..++..
T Consensus 106 ~~~~~-~~~~~~~g~~~~~~~~~~~~~-~~iiv~Tp~~l~~~~~~-~~~~~~~~~~iViDEah~~~~~~~~~~l~~i~~~ 182 (224)
T 1qde_A 106 AFHMD-IKVHACIGGTSFVEDAEGLRD-AQIVVGTPGRVFDNIQR-RRFRTDKIKMFILDEADEMLSSGFKEQIYQIFTL 182 (224)
T ss_dssp TTTSC-CCEEEECC----------CTT-CSEEEECHHHHHHHHHT-TSSCCTTCCEEEEETHHHHHHTTCHHHHHHHHHH
T ss_pred hcccC-ceEEEEeCCcchHHHHhcCCC-CCEEEECHHHHHHHHHh-CCcchhhCcEEEEcChhHHhhhhhHHHHHHHHHh
Confidence 76554 667777887766655554444 89999999999998876 5666889999999999999999998887777655
Q ss_pred H
Q psy15524 161 L 161 (930)
Q Consensus 161 l 161 (930)
+
T Consensus 183 ~ 183 (224)
T 1qde_A 183 L 183 (224)
T ss_dssp S
T ss_pred C
Confidence 4
|
| >1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=3e-25 Score=263.38 Aligned_cols=136 Identities=21% Similarity=0.305 Sum_probs=117.7
Q ss_pred CchhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHHHHHHHHHHhhcCCCc
Q psy15524 633 PPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSVKSG 712 (930)
Q Consensus 633 ~~~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~v~~~F~~~~~~ 712 (930)
+...+...+...+..... .+.++||||+|+..++.+++.|.+. ++.+..+||+|++.+|..+++.|+.|+.+
T Consensus 420 ~~~~~~~~Ll~~l~~~~~-----~~~~vlVf~~t~~~ae~L~~~L~~~---gi~~~~lh~~~~~~~R~~~~~~f~~g~~~ 491 (664)
T 1c4o_A 420 PTENQILDLMEGIRERAA-----RGERTLVTVLTVRMAEELTSFLVEH---GIRARYLHHELDAFKRQALIRDLRLGHYD 491 (664)
T ss_dssp CSTTHHHHHHHHHHHHHH-----TTCEEEEECSSHHHHHHHHHHHHHT---TCCEEEECTTCCHHHHHHHHHHHHTTSCS
T ss_pred cccchHHHHHHHHHHHHh-----cCCEEEEEECCHHHHHHHHHHHHhc---CCCceeecCCCCHHHHHHHHHHhhcCCce
Confidence 334455555555554332 1679999999999999999999885 78888899999999999999999999999
Q ss_pred EEEeccccccccCCCCccEEEEecC-----CCChhhHHhhhcccccCCCCceEEEEeCcccHHHHHHHHh
Q psy15524 713 VLICTDVAARGLDLPLVDWIVQYTA-----PSSSTDYVHRVGRTARVGHEGSSLLFLIPSEVKLVEELQN 777 (930)
Q Consensus 713 vLv~T~~~~~GlDip~v~~VI~~~~-----p~s~~~y~qr~GRagR~g~~g~~~~~~~~~e~~~~~~l~~ 777 (930)
|||||+++++|+|+|++++||++|. |.+..+|+||+|||||.| .|.+++|+.+.+..+.+.+.+
T Consensus 492 VLvaT~~l~~GlDip~v~lVI~~d~d~~G~p~s~~~~iQr~GRagR~~-~G~~i~~~~~~~~~~~~~i~~ 560 (664)
T 1c4o_A 492 CLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNA-RGEVWLYADRVSEAMQRAIEE 560 (664)
T ss_dssp EEEESCCCCTTCCCTTEEEEEETTTTSCSGGGSHHHHHHHHGGGTTST-TCEEEEECSSCCHHHHHHHHH
T ss_pred EEEccChhhcCccCCCCCEEEEeCCcccCCCCCHHHHHHHHCccCcCC-CCEEEEEEcCCCHHHHHHHHH
Confidence 9999999999999999999999997 889999999999999985 899999999888777666654
|
| >1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=99.94 E-value=4.9e-26 Score=254.30 Aligned_cols=237 Identities=29% Similarity=0.444 Sum_probs=182.7
Q ss_pred CCCccCcHHHHHHHHHhhcC-CcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHH
Q psy15524 1 MNITQVTTVQQLSIQPILDG-GDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTK 79 (930)
Q Consensus 1 ~g~~~l~~~Q~~ai~~~~~g-~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~ 79 (930)
+||..|+|+|+++++.+++| +++++++|||+|||++|++|++..+.. .++.++||++|+++|+.|+.+.+.+
T Consensus 24 ~g~~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~-------~~~~~~lil~P~~~L~~q~~~~~~~ 96 (367)
T 1hv8_A 24 KGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNE-------NNGIEAIILTPTRELAIQVADEIES 96 (367)
T ss_dssp HTCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCS-------SSSCCEEEECSCHHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhcc-------cCCCcEEEEcCCHHHHHHHHHHHHH
Confidence 48999999999999999988 699999999999999999999887643 2456799999999999999999999
Q ss_pred HhhhcCCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCcHHHHHHHHH
Q psy15524 80 LCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLE 159 (930)
Q Consensus 80 ~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~~~~~~~i~~ 159 (930)
+....+ ..+....|+.....+...+. +++|+|+||+++.+.+.. ....+.++++||+||||++.++++...+..++.
T Consensus 97 ~~~~~~-~~v~~~~~~~~~~~~~~~~~-~~~iiv~T~~~l~~~~~~-~~~~~~~~~~iIiDEah~~~~~~~~~~~~~~~~ 173 (367)
T 1hv8_A 97 LKGNKN-LKIAKIYGGKAIYPQIKALK-NANIVVGTPGRILDHINR-GTLNLKNVKYFILDEADEMLNMGFIKDVEKILN 173 (367)
T ss_dssp HHCSSC-CCEEEECTTSCHHHHHHHHH-TCSEEEECHHHHHHHHHT-TCSCTTSCCEEEEETHHHHHTTTTHHHHHHHHH
T ss_pred HhCCCC-ceEEEEECCcchHHHHhhcC-CCCEEEecHHHHHHHHHc-CCcccccCCEEEEeCchHhhhhchHHHHHHHHH
Confidence 986543 56677788877666555554 689999999999998875 556688999999999999999998777666554
Q ss_pred HHhhcCCCceEEEEEeecCCCccccccccccccccccchhhhhhhhhhhccchhhHHHHHHHHhhcCcCceEEEEecccc
Q psy15524 160 ILKKQKPQFQSILLSATLTPATCWCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLT 239 (930)
Q Consensus 160 ~l~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~de~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~sat~~ 239 (930)
.+ .+..+++++|||+++
T Consensus 174 ~~---~~~~~~i~~SAT~~~------------------------------------------------------------ 190 (367)
T 1hv8_A 174 AC---NKDKRILLFSATMPR------------------------------------------------------------ 190 (367)
T ss_dssp TS---CSSCEEEEECSSCCH------------------------------------------------------------
T ss_pred hC---CCCceEEEEeeccCH------------------------------------------------------------
Confidence 33 345577777777643
Q ss_pred hHHHHhhhccccCCeeeccCCcccccCCCcccccCCCceeEEEEcCcchhHHHHHHHHhhhccccccCCcceEEEEEecc
Q psy15524 240 PAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQ 319 (930)
Q Consensus 240 ~~~~~l~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~iVF~~s~ 319 (930)
....+...++.++..+.... ...+.+.+..+....+...+..++. ..+.++||||+++
T Consensus 191 -~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~l~~~l~--------~~~~~~lvf~~~~ 248 (367)
T 1hv8_A 191 -EILNLAKKYMGDYSFIKAKI-------------NANIEQSYVEVNENERFEALCRLLK--------NKEFYGLVFCKTK 248 (367)
T ss_dssp -HHHHHHHHHCCSEEEEECCS-------------SSSSEEEEEECCGGGHHHHHHHHHC--------STTCCEEEECSSH
T ss_pred -HHHHHHHHHcCCCeEEEecC-------------CCCceEEEEEeChHHHHHHHHHHHh--------cCCCcEEEEECCH
Confidence 22222223333333332211 2356677777777888888888882 4567899999999
Q ss_pred cchhhhHHHHhhh
Q psy15524 320 DMADYHTELLSTK 332 (930)
Q Consensus 320 ~~~~~l~~~L~~~ 332 (930)
+.++.+++.|+..
T Consensus 249 ~~~~~l~~~L~~~ 261 (367)
T 1hv8_A 249 RDTKELASMLRDI 261 (367)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhc
Confidence 9999999999764
|
| >1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=99.94 E-value=1.5e-26 Score=238.20 Aligned_cols=168 Identities=28% Similarity=0.500 Sum_probs=136.1
Q ss_pred CCCccCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHH
Q psy15524 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKL 80 (930)
Q Consensus 1 ~g~~~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~ 80 (930)
+||+.|+++|+++++.+++|+|+++++|||+|||++|++|++..+.. ...+.++||++|+++|+.|+++.++++
T Consensus 32 ~g~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~~~~------~~~~~~~lil~Pt~~L~~q~~~~~~~~ 105 (220)
T 1t6n_A 32 CGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEP------VTGQVSVLVMCHTRELAFQISKEYERF 105 (220)
T ss_dssp TTCCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCC------CTTCCCEEEECSCHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHHHhhhc------cCCCEEEEEEeCCHHHHHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999988743 123457999999999999999999999
Q ss_pred hhhcCCceeEEeeCCCchHHHHHHhcC-CCcEEEEChHHHHHHHhcCCCccCCCccEEEEccccccccc-CcHHHHHHHH
Q psy15524 81 CKSFTWIVPSWLTGGEKMKSEKARIRK-GISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQ-GYERDIAEFL 158 (930)
Q Consensus 81 ~~~~~~~~~~~~~g~~~~~~~~~~l~~-~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~-~~~~~~~~i~ 158 (930)
....+...+..+.|+.....+...+.. .++|+|+||+++.+.+.. ..+.+.+++++|+||||+++++ +|...+..++
T Consensus 106 ~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~-~~~~~~~~~~lViDEah~~~~~~~~~~~~~~i~ 184 (220)
T 1t6n_A 106 SKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARN-KSLNLKHIKHFILDECDKMLEQLDMRRDVQEIF 184 (220)
T ss_dssp TTTSTTCCEEEESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHT-TSSCCTTCCEEEEESHHHHHSSHHHHHHHHHHH
T ss_pred HhhCCCceEEEEeCCCChHHHHHHHhcCCCCEEEeCHHHHHHHHHh-CCCCcccCCEEEEcCHHHHhcccCcHHHHHHHH
Confidence 876655778888888877766665554 579999999999998876 5567899999999999999874 6766666555
Q ss_pred HHHhhcCCCceEEEEEeecC
Q psy15524 159 EILKKQKPQFQSILLSATLT 178 (930)
Q Consensus 159 ~~l~~~~~~~~~i~lSAT~~ 178 (930)
..+ +++.|++++|||++
T Consensus 185 ~~~---~~~~~~i~~SAT~~ 201 (220)
T 1t6n_A 185 RMT---PHEKQVMMFSATLS 201 (220)
T ss_dssp HTS---CSSSEEEEEESCCC
T ss_pred HhC---CCcCeEEEEEeecC
Confidence 433 22345555555554
|
| >3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=5.9e-27 Score=245.60 Aligned_cols=191 Identities=29% Similarity=0.455 Sum_probs=147.2
Q ss_pred CCCccCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHH
Q psy15524 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKL 80 (930)
Q Consensus 1 ~g~~~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~ 80 (930)
+||..|+|+|+++++.+++|+|+++++|||+|||++|++|++..+... ...+.++||++||++|+.|+++.++++
T Consensus 47 ~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~-----~~~~~~~lil~Pt~~L~~q~~~~~~~~ 121 (245)
T 3dkp_A 47 AGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQLKQP-----ANKGFRALIISPTRELASQIHRELIKI 121 (245)
T ss_dssp TTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHCSC-----CSSSCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHhhc-----ccCCceEEEEeCCHHHHHHHHHHHHHH
Confidence 589999999999999999999999999999999999999999988531 234667999999999999999999999
Q ss_pred hhhcCCceeEEeeCCCchHHH-HHHhcCCCcEEEEChHHHHHHHhcCC-CccCCCccEEEEccccccccc---CcHHHHH
Q psy15524 81 CKSFTWIVPSWLTGGEKMKSE-KARIRKGISILVATPGRLLDHCKHTE-TLKFSKVEHLVLDEADRILDQ---GYERDIA 155 (930)
Q Consensus 81 ~~~~~~~~~~~~~g~~~~~~~-~~~l~~~~~Ilv~Tp~~l~~~l~~~~-~~~l~~l~~vViDE~h~~~~~---~~~~~~~ 155 (930)
+...+ ..+..+.|+...... ......+++|+|+||+++.+++.... .+.+.++++|||||||+++++ +|...+.
T Consensus 122 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~~ 200 (245)
T 3dkp_A 122 SEGTG-FRIHMIHKAAVAAKKFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLASVEWLVVDESDKLFEDGKTGFRDQLA 200 (245)
T ss_dssp TTTSC-CCEECCCHHHHHHTTTSTTSCCCCCEEEECHHHHHHHHHSSSCSCCCTTCCEEEESSHHHHHHHC--CHHHHHH
T ss_pred hcccC-ceEEEEecCccHHHHhhhhhcCCCCEEEECHHHHHHHHHhCCCCcccccCcEEEEeChHHhcccccccHHHHHH
Confidence 87654 444444444322211 12234568999999999999987643 567899999999999999985 4555555
Q ss_pred HHHHHHhhcCCCceEEEEEeecCCCccccccccccccccccchhhhhhhhhhhccchhhHHHHHHHHhhcCcCceEEEEe
Q psy15524 156 EFLEILKKQKPQFQSILLSATLTPATCWCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLS 235 (930)
Q Consensus 156 ~i~~~l~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~de~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~s 235 (930)
.++..+.. ...|.++||
T Consensus 201 ~i~~~~~~---------------------------------------------------------------~~~~~~~~S 217 (245)
T 3dkp_A 201 SIFLACTS---------------------------------------------------------------HKVRRAMFS 217 (245)
T ss_dssp HHHHHCCC---------------------------------------------------------------TTCEEEEEE
T ss_pred HHHHhcCC---------------------------------------------------------------CCcEEEEEe
Confidence 55433211 123777777
Q ss_pred cccchHHHHhhhccccCCeeeccCC
Q psy15524 236 ATLTPAVQRLAGMTLQNPIQIDAAD 260 (930)
Q Consensus 236 at~~~~~~~l~~~~l~~~~~i~~~~ 260 (930)
||++..+..++..++.+|..+.+..
T Consensus 218 AT~~~~v~~~~~~~l~~p~~i~~~~ 242 (245)
T 3dkp_A 218 ATFAYDVEQWCKLNLDNVISVSIGA 242 (245)
T ss_dssp SSCCHHHHHHHHHHSSSCEEEEECC
T ss_pred ccCCHHHHHHHHHhCCCCEEEEeCC
Confidence 7777888888888888888886654
|
| >3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=4.6e-26 Score=257.26 Aligned_cols=240 Identities=25% Similarity=0.389 Sum_probs=176.1
Q ss_pred CCCccCcHHHHHHHHHhhcC--CcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHH
Q psy15524 1 MNITQVTTVQQLSIQPILDG--GDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFT 78 (930)
Q Consensus 1 ~g~~~l~~~Q~~ai~~~~~g--~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~ 78 (930)
+||..|+|+|+++++.++.| +++++++|||+|||++|++|++..+.. ...+.++||++|+++|+.|+++.++
T Consensus 23 ~~~~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~------~~~~~~~lil~P~~~L~~q~~~~~~ 96 (395)
T 3pey_A 23 MKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNP------EDASPQAICLAPSRELARQTLEVVQ 96 (395)
T ss_dssp TTCCSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHHHHHCCT------TCCSCCEEEECSSHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHhcc------CCCCccEEEECCCHHHHHHHHHHHH
Confidence 58999999999999999988 899999999999999999999988753 2245679999999999999999999
Q ss_pred HHhhhcCCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccc-cCcHHHHHHH
Q psy15524 79 KLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILD-QGYERDIAEF 157 (930)
Q Consensus 79 ~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~-~~~~~~~~~i 157 (930)
+++...+ .......++..... ...+++|+|+||+++.+.+.+ ....+.++++||+||||++.+ +++...+..+
T Consensus 97 ~~~~~~~-~~~~~~~~~~~~~~----~~~~~~iiv~T~~~l~~~~~~-~~~~~~~~~~iIiDEah~~~~~~~~~~~~~~~ 170 (395)
T 3pey_A 97 EMGKFTK-ITSQLIVPDSFEKN----KQINAQVIVGTPGTVLDLMRR-KLMQLQKIKIFVLDEADNMLDQQGLGDQCIRV 170 (395)
T ss_dssp HHTTTSC-CCEEEESTTSSCTT----SCBCCSEEEECHHHHHHHHHT-TCBCCTTCCEEEEETHHHHHHSTTHHHHHHHH
T ss_pred HHhcccC-eeEEEEecCchhhh----ccCCCCEEEEcHHHHHHHHHc-CCcccccCCEEEEEChhhhcCccccHHHHHHH
Confidence 9876544 45555555543221 133689999999999998875 566789999999999999987 5666665555
Q ss_pred HHHHhhcCCCceEEEEEeecCCCccccccccccccccccchhhhhhhhhhhccchhhHHHHHHHHhhcCcCceEEEEecc
Q psy15524 158 LEILKKQKPQFQSILLSATLTPATCWCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSAT 237 (930)
Q Consensus 158 ~~~l~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~de~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~sat 237 (930)
...+ +++.|++++|||++
T Consensus 171 ~~~~---~~~~~~i~~SAT~~----------------------------------------------------------- 188 (395)
T 3pey_A 171 KRFL---PKDTQLVLFSATFA----------------------------------------------------------- 188 (395)
T ss_dssp HHTS---CTTCEEEEEESCCC-----------------------------------------------------------
T ss_pred HHhC---CCCcEEEEEEecCC-----------------------------------------------------------
Confidence 4433 23345666666653
Q ss_pred cchHHHHhhhccccCCeeeccCCcccccCCCcccccCCCceeEEEEcCc-chhHHHHHHHHhhhccccccCCcceEEEEE
Q psy15524 238 LTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPP-KLRLVALASFILGKCQNVNEDEESKMLVFM 316 (930)
Q Consensus 238 ~~~~~~~l~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~k~~~l~~~l~~~~~~~~~~~~~~~iVF~ 316 (930)
..+..+...++.++..+...... .....+.+.+..+.. ..+...+..++ ......++||||
T Consensus 189 --~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~l~~~~-------~~~~~~~~lvf~ 250 (395)
T 3pey_A 189 --DAVRQYAKKIVPNANTLELQTNE---------VNVDAIKQLYMDCKNEADKFDVLTELY-------GLMTIGSSIIFV 250 (395)
T ss_dssp --HHHHHHHHHHSCSCEEECCCGGG---------CSCTTEEEEEEECSSHHHHHHHHHHHH-------TTTTSSEEEEEC
T ss_pred --HHHHHHHHHhCCCCeEEEccccc---------cccccccEEEEEcCchHHHHHHHHHHH-------HhccCCCEEEEe
Confidence 33444444444555444333222 123456666666543 45666666666 344668999999
Q ss_pred ecccchhhhHHHHhhh
Q psy15524 317 ATQDMADYHTELLSTK 332 (930)
Q Consensus 317 ~s~~~~~~l~~~L~~~ 332 (930)
++++.++.++..|+..
T Consensus 251 ~~~~~~~~l~~~l~~~ 266 (395)
T 3pey_A 251 ATKKTANVLYGKLKSE 266 (395)
T ss_dssp SCHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHhc
Confidence 9999999999999764
|
| >3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.6e-25 Score=273.23 Aligned_cols=332 Identities=18% Similarity=0.254 Sum_probs=221.4
Q ss_pred CCCCHHHHHhHHhhh----cCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHHHH
Q psy15524 413 TQVTTVQQLSIQPIL----DGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTK 488 (930)
Q Consensus 413 ~~~~~iQ~~~i~~il----~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~ 488 (930)
..++|+|.+++..++ .++++|+..+||+|||+.++..+...+... .....+||||| ..|+.||.+.+.+
T Consensus 235 ~~Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT~~ai~~i~~l~~~~------~~~~~~LIV~P-~sll~qW~~E~~~ 307 (800)
T 3mwy_W 235 GELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFAR------RQNGPHIIVVP-LSTMPAWLDTFEK 307 (800)
T ss_dssp SCCCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTTHHHHHHHHHHHHHH------SCCSCEEEECC-TTTHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHHhhcCCCEEEEeCCCcchHHHHHHHHHHHHHhc------CCCCCEEEEEC-chHHHHHHHHHHH
Confidence 378999999998766 688999999999999999766665544332 23455899999 6899999999998
Q ss_pred hhccCCCcceEEEeCCCchHHHHHHH------------hcCCcEEEECchhHHHhhhccCCcccccceEEEEecchhhhh
Q psy15524 489 LCKSFTWIVPSWLTGGEKMKSEKARI------------RKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILD 556 (930)
Q Consensus 489 ~~~~~~~~~~~~~~gg~~~~~~~~~~------------~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~l~~ 556 (930)
++. ...+....|+.......... ....+|+|+|++.+...... +....+++||+||||++-+
T Consensus 308 ~~p---~~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~~~~---l~~~~w~~vIvDEaH~lkn 381 (800)
T 3mwy_W 308 WAP---DLNCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRAE---LGSIKWQFMAVDEAHRLKN 381 (800)
T ss_dssp HST---TCCEEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHTHHH---HHTSEEEEEEETTGGGGCC
T ss_pred HCC---CceEEEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecHHHHHhhHHH---HhcCCcceeehhhhhhhcC
Confidence 864 33445555554433332221 13478999999999765432 2233688999999999954
Q ss_pred cCcHHHHHHHHHHHhhcCccceEEEEccccCH----HHHHHHhhhcCC-----------------------------CEE
Q psy15524 557 QGYERDIAEFLEILKKQKPQFQSILLSATLTP----AVQRLAGMTLQN-----------------------------PIQ 603 (930)
Q Consensus 557 ~g~~~~l~~i~~~l~~~~~~~q~vl~SAT~~~----~~~~l~~~~~~~-----------------------------~~~ 603 (930)
.+- .....+..+. ....+++|||+-. ++..+....... |..
T Consensus 382 ~~s--~~~~~l~~l~----~~~rl~LTgTPiqN~l~el~~ll~fL~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~p~~ 455 (800)
T 3mwy_W 382 AES--SLYESLNSFK----VANRMLITGTPLQNNIKELAALVNFLMPGRFTIDQEIDFENQDEEQEEYIHDLHRRIQPFI 455 (800)
T ss_dssp SSS--HHHHHHTTSE----EEEEEEECSCCCSSCSHHHHHHHHHHCSCCC---------CCTTHHHHHHHHHHHTTGGGE
T ss_pred chh--HHHHHHHHhh----hccEEEeeCCcCCCCHHHHHHHHHHhCccccCchhhhcccccchhHHHHHHHHHHHHhHHH
Confidence 432 2233333332 4456899999831 222222222111 111
Q ss_pred EEccCCCCcccCccceecCCCceEEEEEcC--------------------------------------------------
Q psy15524 604 IDAADSTDIHNTTDSLVIPDSLKQHFIVTP-------------------------------------------------- 633 (930)
Q Consensus 604 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------------------------- 633 (930)
+........ ...|........+..
T Consensus 456 lRR~k~dv~------~~LP~k~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~l~~l~~Lrk~~~hp~l~~~~ 529 (800)
T 3mwy_W 456 LRRLKKDVE------KSLPSKTERILRVELSDVQTEYYKNILTKNYSALTAGAKGGHFSLLNIMNELKKASNHPYLFDNA 529 (800)
T ss_dssp EECCGGGGT------TTSCCEEEEEEEECCCHHHHHHHHHHHHHCCC----------CTHHHHHHHHHHHHHCGGGSSSH
T ss_pred hhhhHHhhh------hccCCcEEEEEEeCCCHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHhcChhhhcch
Confidence 110000000 001111111111000
Q ss_pred ------------------------chhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCCceEEE
Q psy15524 634 ------------------------PKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFK 689 (930)
Q Consensus 634 ------------------------~~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~ 689 (930)
...|+..+..++..... .+.++|||+.....++.+...|... |+.+..
T Consensus 530 ~~~~~~~~~~~~~~~~~~~~~l~~~s~K~~~L~~lL~~~~~-----~g~kvLIFsq~~~~ld~L~~~L~~~---g~~~~~ 601 (800)
T 3mwy_W 530 EERVLQKFGDGKMTRENVLRGLIMSSGKMVLLDQLLTRLKK-----DGHRVLIFSQMVRMLDILGDYLSIK---GINFQR 601 (800)
T ss_dssp HHHHCCCC----CCSHHHHHHHHHTCHHHHHHHHHHHHHTT-----TTCCEEEEESCHHHHHHHHHHHHHH---TCCCEE
T ss_pred HHHHHHhcccccccHHHHHHHhhhcChHHHHHHHHHHHHhh-----CCCeEEEEechHHHHHHHHHHHHhC---CCCEEE
Confidence 12234444444443221 2679999999999999999999875 788899
Q ss_pred ecCCCCHHHHHHHHHHhhcCCCc---EEEeccccccccCCCCccEEEEecCCCChhhHHhhhcccccCCCCceEE--EEe
Q psy15524 690 LHGSMSQSERTEVFKTFRSVKSG---VLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSL--LFL 764 (930)
Q Consensus 690 lhg~~~~~~R~~v~~~F~~~~~~---vLv~T~~~~~GlDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~g~~~--~~~ 764 (930)
+||+++..+|..+++.|+++... +|++|++++.|+|++.+++||++|+|+++..++|++||+.|.|+...+. -|+
T Consensus 602 i~G~~~~~eR~~~i~~F~~~~~~~~v~LlSt~agg~GlNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrlv 681 (800)
T 3mwy_W 602 LDGTVPSAQRRISIDHFNSPDSNDFVFLLSTRAGGLGINLMTADTVVIFDSDWNPQADLQAMARAHRIGQKNHVMVYRLV 681 (800)
T ss_dssp ESTTSCHHHHHHHHHTTSSTTCSCCCEEEEHHHHTTTCCCTTCCEEEESSCCSCSHHHHHHHTTTSCSSCCSCEEEEEEE
T ss_pred EeCCCCHHHHHHHHHHhhCCCCCceEEEEecccccCCCCccccceEEEecCCCChhhHHHHHHHHHhcCCCceEEEEEEe
Confidence 99999999999999999986654 8999999999999999999999999999999999999999999876554 355
Q ss_pred Ccc--cHHHHHHHHh
Q psy15524 765 IPS--EVKLVEELQN 777 (930)
Q Consensus 765 ~~~--e~~~~~~l~~ 777 (930)
+.. |...++.+..
T Consensus 682 ~~~TiEe~i~~~~~~ 696 (800)
T 3mwy_W 682 SKDTVEEEVLERARK 696 (800)
T ss_dssp ETTSHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHH
Confidence 544 4445554443
|
| >3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.6e-26 Score=262.42 Aligned_cols=241 Identities=19% Similarity=0.196 Sum_probs=175.3
Q ss_pred CCccCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHHh
Q psy15524 2 NITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLC 81 (930)
Q Consensus 2 g~~~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~ 81 (930)
|| +|+|+|+++++.+++|+|+++++|||||||++|++|++..+. .+.++||++||++|+.|+++++++++
T Consensus 19 ~~-~~~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~l~~~~~~~~---------~~~~~lil~Pt~~L~~q~~~~~~~~~ 88 (414)
T 3oiy_A 19 GK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLAR---------KGKKSALVFPTVTLVKQTLERLQKLA 88 (414)
T ss_dssp SS-CCCHHHHHHHHHHTTTCCEECCSCSSSSHHHHHHHHHHHHHT---------TTCCEEEEESSHHHHHHHHHHHHHHC
T ss_pred CC-CCCHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHhc---------CCCEEEEEECCHHHHHHHHHHHHHHc
Confidence 66 699999999999999999999999999999999999887662 25679999999999999999999987
Q ss_pred hhcCCceeEEeeCCCch---HHHHHHhcCC-CcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCcHHHHHHH
Q psy15524 82 KSFTWIVPSWLTGGEKM---KSEKARIRKG-ISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEF 157 (930)
Q Consensus 82 ~~~~~~~~~~~~g~~~~---~~~~~~l~~~-~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~~~~~~~i 157 (930)
. ..+.+..++|+... ..+...+..+ ++|+|+||+++.+++.. +.+.++++|||||||++.+|+..
T Consensus 89 ~--~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~---~~~~~~~~iViDEaH~~~~~~~~------ 157 (414)
T 3oiy_A 89 D--EKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK---LSQKRFDFVFVDDVDAVLKASRN------ 157 (414)
T ss_dssp C--SSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHH---HTTCCCSEEEESCHHHHHHCHHH------
T ss_pred c--CCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHH---hccccccEEEEeChHhhhhccch------
Confidence 6 34778888898876 4445555555 99999999999888763 55779999999999998775432
Q ss_pred HHHHhhcCCCceEEEEEeecCCCccccccccccccccccchhhhhhhhhhh-ccchhh-HHHHHHHHhh--------cCc
Q psy15524 158 LEILKKQKPQFQSILLSATLTPATCWCKHTETLKFSKVEHLVLDEADRILD-QGYERD-IAEFLEILKK--------QKP 227 (930)
Q Consensus 158 ~~~l~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~de~~~~~~-~~~~~~-~~~~~~~~~~--------~~~ 227 (930)
.+++++ .+|..+ +..++..++. ...
T Consensus 158 ---------------------------------------------~d~~l~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~ 192 (414)
T 3oiy_A 158 ---------------------------------------------IDTLLMMVGIPEEIIRKAFSTIKQGKIYERPKNLK 192 (414)
T ss_dssp ---------------------------------------------HHHHHHHTTCCHHHHHHHHHHHHHTCCCCCCTTCC
T ss_pred ---------------------------------------------hhhHHhhcCCcHHHHHHHHHhcccchhhhhcccCC
Confidence 133344 444444 4455554440 113
Q ss_pred CceEEEEecc-cchHHH-HhhhccccCCeeeccCCcccccCCCcccccCCCceeEEEEcCcchhHHHHHHHHhhhccccc
Q psy15524 228 QFQSVLLSAT-LTPAVQ-RLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALASFILGKCQNVN 305 (930)
Q Consensus 228 ~~q~~~~sat-~~~~~~-~l~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~~ 305 (930)
..|.+++||| .+..+. .+...++ .+...... ..+.++.+.+..+ .+...+..++..
T Consensus 193 ~~~~i~~SAT~~~~~~~~~~~~~~~----~~~~~~~~---------~~~~~i~~~~~~~---~~~~~l~~~l~~------ 250 (414)
T 3oiy_A 193 PGILVVSSATAKPRGIRPLLFRDLL----NFTVGRLV---------SVARNITHVRISS---RSKEKLVELLEI------ 250 (414)
T ss_dssp CCEEEESSCCSSCCSSTTHHHHHHH----SCCSSCCC---------CCCCSEEEEEESS---CCHHHHHHHHHH------
T ss_pred CceEEEEecCCCcchhHHHHHHHhh----ccCcCccc---------cccccchheeecc---CHHHHHHHHHHH------
Confidence 4599999999 554433 2222221 12111111 2345677777655 455666666632
Q ss_pred cCCcceEEEEEecccchhhhHHHHhhh
Q psy15524 306 EDEESKMLVFMATQDMADYHTELLSTK 332 (930)
Q Consensus 306 ~~~~~~~iVF~~s~~~~~~l~~~L~~~ 332 (930)
.+.++||||++++.|+.++..|+..
T Consensus 251 --~~~~~lVF~~~~~~~~~l~~~L~~~ 275 (414)
T 3oiy_A 251 --FRDGILIFAQTEEEGKELYEYLKRF 275 (414)
T ss_dssp --HCSSEEEEESSHHHHHHHHHHHHHT
T ss_pred --cCCCEEEEECCHHHHHHHHHHHHHc
Confidence 2479999999999999999999865
|
| >2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.94 E-value=1e-25 Score=248.50 Aligned_cols=160 Identities=36% Similarity=0.548 Sum_probs=132.2
Q ss_pred CCCccCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHH
Q psy15524 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKL 80 (930)
Q Consensus 1 ~g~~~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~ 80 (930)
+||..|+|+|+++++.+++|+++++++|||+|||++|++|++.. +.++||++|+++|+.|+++.++++
T Consensus 12 ~g~~~l~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~------------~~~~liv~P~~~L~~q~~~~~~~~ 79 (337)
T 2z0m_A 12 MGFKNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPILEL------------GMKSLVVTPTRELTRQVASHIRDI 79 (337)
T ss_dssp TTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHH------------TCCEEEECSSHHHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHhcCCCEEEEcCCCCcHHHHHHHHHHhh------------cCCEEEEeCCHHHHHHHHHHHHHH
Confidence 69999999999999999999999999999999999999998863 345999999999999999999998
Q ss_pred hhhcCCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCcHHHHHHHHHH
Q psy15524 81 CKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEI 160 (930)
Q Consensus 81 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~~~~~~~i~~~ 160 (930)
+...+ ..+..+.|+.....+...+. .++|+|+||+++.+.+.. ..+.+.++++||+||||++.++++...+..++..
T Consensus 80 ~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~i~v~T~~~l~~~~~~-~~~~~~~~~~iViDEah~~~~~~~~~~~~~~~~~ 156 (337)
T 2z0m_A 80 GRYMD-TKVAEVYGGMPYKAQINRVR-NADIVVATPGRLLDLWSK-GVIDLSSFEIVIIDEADLMFEMGFIDDIKIILAQ 156 (337)
T ss_dssp TTTSC-CCEEEECTTSCHHHHHHHHT-TCSEEEECHHHHHHHHHT-TSCCGGGCSEEEEESHHHHHHTTCHHHHHHHHHH
T ss_pred hhhcC-CcEEEEECCcchHHHHhhcC-CCCEEEECHHHHHHHHHc-CCcchhhCcEEEEEChHHhhccccHHHHHHHHhh
Confidence 76554 56777788877666655554 489999999999998765 5566788999999999999999998877776655
Q ss_pred HhhcCCCceEEEEEeecC
Q psy15524 161 LKKQKPQFQSILLSATLT 178 (930)
Q Consensus 161 l~~~~~~~~~i~lSAT~~ 178 (930)
++ ...+++++|||++
T Consensus 157 ~~---~~~~~~~~SAT~~ 171 (337)
T 2z0m_A 157 TS---NRKITGLFSATIP 171 (337)
T ss_dssp CT---TCSEEEEEESCCC
T ss_pred CC---cccEEEEEeCcCC
Confidence 43 2345556666654
|
| >2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B* | Back alignment and structure |
|---|
Probab=99.93 E-value=3.6e-24 Score=254.00 Aligned_cols=136 Identities=24% Similarity=0.359 Sum_probs=117.9
Q ss_pred CchhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHHHHHHHHHHhhcCCCc
Q psy15524 633 PPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSVKSG 712 (930)
Q Consensus 633 ~~~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~v~~~F~~~~~~ 712 (930)
+...+...+...+..... .+.++||||+|+..++.+++.|.+. |+.+..+||++++.+|..++++|++|+.+
T Consensus 426 ~~~~~~~~Ll~~l~~~~~-----~~~~vlVf~~t~~~ae~L~~~L~~~---gi~~~~lh~~~~~~~R~~~l~~f~~g~~~ 497 (661)
T 2d7d_A 426 PIEGQIDDLIGEIQARIE-----RNERVLVTTLTKKMSEDLTDYLKEI---GIKVNYLHSEIKTLERIEIIRDLRLGKYD 497 (661)
T ss_dssp CSTTHHHHHHHHHHHHHT-----TTCEEEEECSSHHHHHHHHHHHHHT---TCCEEEECTTCCHHHHHHHHHHHHHTSCS
T ss_pred cccchHHHHHHHHHHHHh-----cCCeEEEEECCHHHHHHHHHHHHhc---CCCeEEEeCCCCHHHHHHHHHHHhcCCeE
Confidence 334455555555554332 1679999999999999999999985 78888899999999999999999999999
Q ss_pred EEEeccccccccCCCCccEEEEecC-----CCChhhHHhhhcccccCCCCceEEEEeCcccHHHHHHHHh
Q psy15524 713 VLICTDVAARGLDLPLVDWIVQYTA-----PSSSTDYVHRVGRTARVGHEGSSLLFLIPSEVKLVEELQN 777 (930)
Q Consensus 713 vLv~T~~~~~GlDip~v~~VI~~~~-----p~s~~~y~qr~GRagR~g~~g~~~~~~~~~e~~~~~~l~~ 777 (930)
|||||+++++|+|+|++++||++|. |.+..+|+||+|||||. ..|.+++|+.+.+..+.+.+.+
T Consensus 498 VLVaT~~l~~GlDip~v~lVi~~d~d~~G~p~s~~~~iQr~GRagR~-~~G~~i~~~~~~~~~~~~~i~~ 566 (661)
T 2d7d_A 498 VLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-AEGRVIMYADKITKSMEIAINE 566 (661)
T ss_dssp EEEESCCCSTTCCCTTEEEEEETTTTCCTTTTSHHHHHHHHHTTTTS-TTCEEEEECSSCCHHHHHHHHH
T ss_pred EEEecchhhCCcccCCCCEEEEeCcccccCCCCHHHHHHHhCcccCC-CCCEEEEEEeCCCHHHHHHHHH
Confidence 9999999999999999999999997 99999999999999998 7899999999988777666553
|
| >4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A | Back alignment and structure |
|---|
Probab=99.93 E-value=1.6e-25 Score=278.30 Aligned_cols=244 Identities=19% Similarity=0.215 Sum_probs=177.8
Q ss_pred CCCccCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHH
Q psy15524 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKL 80 (930)
Q Consensus 1 ~g~~~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~ 80 (930)
+|| +|+|+|++|++.+++|+|++++||||||||++|+++++..+. .+.++|||+||++|+.|++++++++
T Consensus 75 ~gf-~pt~iQ~~ai~~il~g~dvlv~ApTGSGKTl~~l~~il~~~~---------~~~~~Lil~PtreLa~Q~~~~l~~l 144 (1104)
T 4ddu_A 75 FGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLAR---------KGKKSALVFPTVTLVKQTLERLQKL 144 (1104)
T ss_dssp SSS-CCCHHHHHHHHHHTTTCCEEECCSTTCCHHHHHHHHHHHHHT---------TTCCEEEEESSHHHHHHHHHHHHTT
T ss_pred cCC-CCCHHHHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHHHHHh---------cCCeEEEEechHHHHHHHHHHHHHh
Confidence 477 599999999999999999999999999999998888887762 3567999999999999999999997
Q ss_pred hhhcCCceeEEeeCCCch---HHHHHHhcCC-CcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCcHHHHHH
Q psy15524 81 CKSFTWIVPSWLTGGEKM---KSEKARIRKG-ISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAE 156 (930)
Q Consensus 81 ~~~~~~~~~~~~~g~~~~---~~~~~~l~~~-~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~~~~~~~ 156 (930)
+ . ..+.+..++|+... ..+...+..+ ++|+|+||++|.+++.. +.+.++++|||||||++.+++..
T Consensus 145 ~-~-~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~---l~~~~l~~lViDEaH~l~~~~r~----- 214 (1104)
T 4ddu_A 145 A-D-EKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK---LSQKRFDFVFVDDVDAVLKASRN----- 214 (1104)
T ss_dssp S-C-TTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHH---HHTSCCSEEEESCHHHHTTSSHH-----
T ss_pred h-C-CCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHh---hcccCcCEEEEeCCCcccccccc-----
Confidence 6 3 34788889999877 5566666665 99999999999888763 56789999999999987753321
Q ss_pred HHHHHhhcCCCceEEEEEeecCCCccccccccccccccccchhhhhhhhhhh-ccchhh-HHHHHHHHh--------hcC
Q psy15524 157 FLEILKKQKPQFQSILLSATLTPATCWCKHTETLKFSKVEHLVLDEADRILD-QGYERD-IAEFLEILK--------KQK 226 (930)
Q Consensus 157 i~~~l~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~de~~~~~~-~~~~~~-~~~~~~~~~--------~~~ 226 (930)
.|++++ .+|..+ +..+++.++ ...
T Consensus 215 ----------------------------------------------~Dr~L~~~gf~~~~i~~il~~l~~~~~~~~~~~~ 248 (1104)
T 4ddu_A 215 ----------------------------------------------IDTLLMMVGIPEEIIRKAFSTIKQGKIYERPKNL 248 (1104)
T ss_dssp ----------------------------------------------HHHHHHTSSCCHHHHHHHHHHHHHTSCCCCCSSC
T ss_pred ----------------------------------------------chhhhHhcCCCHHHHHHHHHhcccchhhhhhccC
Confidence 133444 444444 444444444 011
Q ss_pred cCceEEEEecc-cchHHHHhhhccccCCeeeccCCcccccCCCcccccCCCceeEEEEcCcchhHHHHHHHHhhhccccc
Q psy15524 227 PQFQSVLLSAT-LTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALASFILGKCQNVN 305 (930)
Q Consensus 227 ~~~q~~~~sat-~~~~~~~l~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~~ 305 (930)
...|+++|||| .+..+... ++.++..+.+.... ..+.++.+.+..+ .|...|..++..
T Consensus 249 ~~~q~ll~SAT~~p~~~~~~---~~~~~l~i~v~~~~---------~~~~~i~~~~~~~---~k~~~L~~ll~~------ 307 (1104)
T 4ddu_A 249 KPGILVVSSATAKPRGIRPL---LFRDLLNFTVGRLV---------SVARNITHVRISS---RSKEKLVELLEI------ 307 (1104)
T ss_dssp CCCEEEEECBSSCCCSSTTH---HHHHHTCCCCCBCC---------CCCCCEEEEEESC---CCHHHHHHHHHH------
T ss_pred CCceEEEEcCCCCcHHHHHH---HhhcceeEEeccCC---------CCcCCceeEEEec---CHHHHHHHHHHh------
Confidence 34599999999 55443321 11222222222211 2356677887765 456666777732
Q ss_pred cCCcceEEEEEecccchhhhHHHHhhhh
Q psy15524 306 EDEESKMLVFMATQDMADYHTELLSTKK 333 (930)
Q Consensus 306 ~~~~~~~iVF~~s~~~~~~l~~~L~~~~ 333 (930)
.+.++||||++++.|+.++..|+..|
T Consensus 308 --~~~~~LVF~~s~~~a~~l~~~L~~~g 333 (1104)
T 4ddu_A 308 --FRDGILIFAQTEEEGKELYEYLKRFK 333 (1104)
T ss_dssp --HCSSEEEEESSSHHHHHHHHHHHHTT
T ss_pred --cCCCEEEEECcHHHHHHHHHHHHhCC
Confidence 24799999999999999999998764
|
| >2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=6.3e-25 Score=266.67 Aligned_cols=174 Identities=18% Similarity=0.215 Sum_probs=136.4
Q ss_pred CCCccCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHH
Q psy15524 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKL 80 (930)
Q Consensus 1 ~g~~~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~ 80 (930)
+||.+|+|+|.++++.++.|+|+++++|||+|||++|++|+++.+..... ..+.++|||+||++|+.|+.+.++++
T Consensus 9 ~g~~~lr~~Q~~~i~~~l~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~~----~~~~~~lvl~Pt~~L~~Q~~~~~~~~ 84 (696)
T 2ykg_A 9 YSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQ----GQKGKVVFFANQIPVYEQNKSVFSKY 84 (696)
T ss_dssp TC--CCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCT----TCCCCEEEECSSHHHHHHHHHHHHHH
T ss_pred cCCCCccHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHHHHhCcc----CCCCeEEEEECCHHHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999998865321 12357999999999999999999999
Q ss_pred hhhcCCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccC-cHHHHHHHHH
Q psy15524 81 CKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQG-YERDIAEFLE 159 (930)
Q Consensus 81 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~-~~~~~~~i~~ 159 (930)
+...+ +.+..++|+.........+..+++|+|+||++|.+.+.......+.++++|||||||++.++. +...+...+.
T Consensus 85 ~~~~~-~~v~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~L~~~l~~~~~~~l~~~~~vViDEaH~~~~~~~~~~i~~~~l~ 163 (696)
T 2ykg_A 85 FERHG-YRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLD 163 (696)
T ss_dssp TTTTT-CCEEEECSSSCSSSCHHHHHHTCSEEEECHHHHHHHHHTTSSCCGGGCSEEEEETGGGCSTTCHHHHHHHHHHH
T ss_pred hccCC-ceEEEEeCCccccccHHHhccCCCEEEECHHHHHHHHhcCcccccccccEEEEeCCCcccCcccHHHHHHHHHH
Confidence 86444 677788888766555555666799999999999999876333368899999999999998665 2222222222
Q ss_pred H-Hh-hcCCCceEEEEEeecCC
Q psy15524 160 I-LK-KQKPQFQSILLSATLTP 179 (930)
Q Consensus 160 ~-l~-~~~~~~~~i~lSAT~~~ 179 (930)
. +. ...+.+++++||||+..
T Consensus 164 ~~~~~~~~~~~~il~LTATp~~ 185 (696)
T 2ykg_A 164 QKLGGSSGPLPQVIGLTASVGV 185 (696)
T ss_dssp HHHTTCCSCCCEEEEEESCCCC
T ss_pred HhhcccCCCCCeEEEEeCcccc
Confidence 2 11 12467899999999974
|
| >1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=5.3e-25 Score=255.27 Aligned_cols=160 Identities=24% Similarity=0.311 Sum_probs=124.8
Q ss_pred CCCccCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHH
Q psy15524 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKL 80 (930)
Q Consensus 1 ~g~~~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~ 80 (930)
+||.+|+|+|.++|+.+++|+|+++++|||+|||++|++|++.. +..+||++|+++|+.|+++.++++
T Consensus 21 ~g~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~~------------~g~~lvi~P~~aL~~q~~~~l~~~ 88 (523)
T 1oyw_A 21 FGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLL------------NGLTVVVSPLISLMKDQVDQLQAN 88 (523)
T ss_dssp TCCSSCCTTHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHS------------SSEEEEECSCHHHHHHHHHHHHHT
T ss_pred hCCCCCCHHHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHh------------CCCEEEECChHHHHHHHHHHHHHc
Confidence 69999999999999999999999999999999999999999742 245999999999999999999876
Q ss_pred hhhcCCceeEEeeCCCchHHHH----HHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccC--cHHHH
Q psy15524 81 CKSFTWIVPSWLTGGEKMKSEK----ARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQG--YERDI 154 (930)
Q Consensus 81 ~~~~~~~~~~~~~g~~~~~~~~----~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~--~~~~~ 154 (930)
+ +....+.++....... ....+.++|+|+||+++...... ..+...++++|||||||++.+|| |++.+
T Consensus 89 g-----i~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~-~~l~~~~~~~vViDEaH~i~~~g~~fr~~~ 162 (523)
T 1oyw_A 89 G-----VAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFL-EHLAHWNPVLLAVDEAHCISQWGHDFRPEY 162 (523)
T ss_dssp T-----CCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHH-HHHTTSCEEEEEESSGGGGCTTSSCCCHHH
T ss_pred C-----CcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHH-HHHhhCCCCEEEEeCccccCcCCCccHHHH
Confidence 3 4566667766544332 22345689999999998532111 12334789999999999999998 77777
Q ss_pred HHHHHHHhhcCCCceEEEEEeecCC
Q psy15524 155 AEFLEILKKQKPQFQSILLSATLTP 179 (930)
Q Consensus 155 ~~i~~~l~~~~~~~~~i~lSAT~~~ 179 (930)
..+... ....++++++++|||+++
T Consensus 163 ~~l~~l-~~~~~~~~~i~lSAT~~~ 186 (523)
T 1oyw_A 163 AALGQL-RQRFPTLPFMALTATADD 186 (523)
T ss_dssp HGGGGH-HHHCTTSCEEEEESCCCH
T ss_pred HHHHHH-HHhCCCCCEEEEeCCCCH
Confidence 665433 333456789999999864
|
| >2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=1.2e-24 Score=254.56 Aligned_cols=161 Identities=22% Similarity=0.363 Sum_probs=124.7
Q ss_pred CCCccCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHH
Q psy15524 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKL 80 (930)
Q Consensus 1 ~g~~~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~ 80 (930)
|||..|+|+|+++|+.+++|+|+++++|||+|||+||++|++.. ++++|||+|+++|+.|+++.+.++
T Consensus 40 fg~~~~rp~Q~~~i~~il~g~d~lv~~pTGsGKTl~~~lpal~~------------~g~~lVisP~~~L~~q~~~~l~~~ 107 (591)
T 2v1x_A 40 FKLEKFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALCS------------DGFTLVICPLISLMEDQLMVLKQL 107 (591)
T ss_dssp SCCCSCCTTHHHHHHHHHTTCCEEEECCTTSCTTHHHHHHHHTS------------SSEEEEECSCHHHHHHHHHHHHHH
T ss_pred hCCCCCCHHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHHHc------------CCcEEEEeCHHHHHHHHHHHHHhc
Confidence 69999999999999999999999999999999999999999742 346999999999999999999887
Q ss_pred hhhcCCceeEEeeCCCchHHHHHH---h---cCCCcEEEEChHHHHH---HHhc-CCCccCCCccEEEEcccccccccC-
Q psy15524 81 CKSFTWIVPSWLTGGEKMKSEKAR---I---RKGISILVATPGRLLD---HCKH-TETLKFSKVEHLVLDEADRILDQG- 149 (930)
Q Consensus 81 ~~~~~~~~~~~~~g~~~~~~~~~~---l---~~~~~Ilv~Tp~~l~~---~l~~-~~~~~l~~l~~vViDE~h~~~~~~- 149 (930)
+ +.+..++|+......... + ...++|+|+||++|.. ++.. .....+.++++|||||||++.+||
T Consensus 108 g-----i~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~~~~~~~i~~iViDEAH~is~~g~ 182 (591)
T 2v1x_A 108 G-----ISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEKAYEARRFTRIAVDEVHCCSQWGH 182 (591)
T ss_dssp T-----CCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHHHHHHTTCEEEEEEETGGGGSTTCT
T ss_pred C-----CcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHHhhhhccCCcEEEEECccccccccc
Confidence 3 556777777765544322 2 3568999999998742 2211 023346789999999999999998
Q ss_pred -cHHHHHHHHHHHhhcCCCceEEEEEeecCC
Q psy15524 150 -YERDIAEFLEILKKQKPQFQSILLSATLTP 179 (930)
Q Consensus 150 -~~~~~~~i~~~l~~~~~~~~~i~lSAT~~~ 179 (930)
|++.+..+ ..+....+++++++||||+++
T Consensus 183 dfr~~~~~l-~~l~~~~~~~~ii~lSAT~~~ 212 (591)
T 2v1x_A 183 DFRPDYKAL-GILKRQFPNASLIGLTATATN 212 (591)
T ss_dssp TCCGGGGGG-GHHHHHCTTSEEEEEESSCCH
T ss_pred ccHHHHHHH-HHHHHhCCCCcEEEEecCCCH
Confidence 77776542 233333456778888888753
|
| >2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.92 E-value=2.9e-24 Score=209.27 Aligned_cols=146 Identities=25% Similarity=0.507 Sum_probs=136.3
Q ss_pred CCCceEEEEEcCchhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHHHHHH
Q psy15524 622 PDSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTE 701 (930)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~ 701 (930)
+..+.+.+..++.+.|...|..++... ...++||||++++.++.+++.|... ++.+..+||+|++.+|..
T Consensus 7 ~~~i~~~~~~~~~~~K~~~L~~ll~~~-------~~~~~lVF~~~~~~~~~l~~~L~~~---~~~~~~~hg~~~~~~r~~ 76 (163)
T 2hjv_A 7 TRNIEHAVIQVREENKFSLLKDVLMTE-------NPDSCIIFCRTKEHVNQLTDELDDL---GYPCDKIHGGMIQEDRFD 76 (163)
T ss_dssp CCCEEEEEEECCGGGHHHHHHHHHHHH-------CCSSEEEECSSHHHHHHHHHHHHHT---TCCEEEECTTSCHHHHHH
T ss_pred cccceEEEEECChHHHHHHHHHHHHhc-------CCCcEEEEECCHHHHHHHHHHHHHc---CCcEEEEeCCCCHHHHHH
Confidence 456899999999999999999888753 1569999999999999999999875 788999999999999999
Q ss_pred HHHHhhcCCCcEEEeccccccccCCCCccEEEEecCCCChhhHHhhhcccccCCCCceEEEEeCcccHHHHHHHHh
Q psy15524 702 VFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPSEVKLVEELQN 777 (930)
Q Consensus 702 v~~~F~~~~~~vLv~T~~~~~GlDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~e~~~~~~l~~ 777 (930)
+++.|++|+.+|||||+++++|+|+|++++||++|+|.++.+|+||+||+||.|+.|.+++|+.+.+..+++.+.+
T Consensus 77 ~~~~f~~g~~~vlv~T~~~~~Gld~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~i~~ 152 (163)
T 2hjv_A 77 VMNEFKRGEYRYLVATDVAARGIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGKAISFVTAFEKRFLADIEE 152 (163)
T ss_dssp HHHHHHTTSCSEEEECGGGTTTCCCSCCSEEEESSCCSSHHHHHHHTTTSSCTTCCEEEEEEECGGGHHHHHHHHH
T ss_pred HHHHHHcCCCeEEEECChhhcCCchhcCCEEEEeCCCCCHHHHHHhccccCcCCCCceEEEEecHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999888875
|
| >2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.8e-24 Score=215.67 Aligned_cols=163 Identities=25% Similarity=0.393 Sum_probs=128.5
Q ss_pred hhhcCCCEEEEccCCCCcccCccceecCCCceEEEEEcCchhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHH
Q psy15524 595 GMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHT 674 (930)
Q Consensus 595 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~ 674 (930)
+.++.+|..|.+.... ..+..+.+.+..++...|...|..++... +.++||||++++.++.++
T Consensus 9 ~~~~~~p~~i~v~~~~---------~~~~~i~q~~~~~~~~~K~~~L~~~l~~~--------~~~~lVF~~~~~~~~~l~ 71 (191)
T 2p6n_A 9 SGVDLGTENLYFQSMG---------AASLDVIQEVEYVKEEAKMVYLLECLQKT--------PPPVLIFAEKKADVDAIH 71 (191)
T ss_dssp ----------------------------CCSEEEEEECCGGGHHHHHHHHHTTS--------CSCEEEECSCHHHHHHHH
T ss_pred ccccCCCEEEEECCCC---------CCCcCceEEEEEcChHHHHHHHHHHHHhC--------CCCEEEEECCHHHHHHHH
Confidence 3466778777664332 23467889999999999999988887642 468999999999999999
Q ss_pred HHHhhhcCCCceEEEecCCCCHHHHHHHHHHhhcCCCcEEEeccccccccCCCCccEEEEecCCCChhhHHhhhcccccC
Q psy15524 675 ELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARV 754 (930)
Q Consensus 675 ~~l~~~~~~~~~~~~lhg~~~~~~R~~v~~~F~~~~~~vLv~T~~~~~GlDip~v~~VI~~~~p~s~~~y~qr~GRagR~ 754 (930)
+.|... ++.+..+||+|++.+|..+++.|++|+.+|||||+++++|+|+|++++||+||+|.++.+|+||+||+||.
T Consensus 72 ~~L~~~---g~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~~~~~Gldi~~v~~VI~~d~p~~~~~~~qr~GR~gR~ 148 (191)
T 2p6n_A 72 EYLLLK---GVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGCS 148 (191)
T ss_dssp HHHHHH---TCCEEEECTTSCHHHHHHHHHHHHHTSCSEEEECHHHHTTCCCCCCSEEEESSCCSSHHHHHHHHTTSCC-
T ss_pred HHHHHc---CCcEEEEeCCCCHHHHHHHHHHHhcCCCEEEEEcCchhcCCCcccCCEEEEeCCCCCHHHHHHHhCccccC
Confidence 999875 78889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceEEEEeCcc-cHHHHHHHHh
Q psy15524 755 GHEGSSLLFLIPS-EVKLVEELQN 777 (930)
Q Consensus 755 g~~g~~~~~~~~~-e~~~~~~l~~ 777 (930)
|+.|.+++|+.+. +..+++.+.+
T Consensus 149 g~~g~~i~l~~~~~~~~~~~~l~~ 172 (191)
T 2p6n_A 149 GNTGIATTFINKACDESVLMDLKA 172 (191)
T ss_dssp --CCEEEEEECTTSCHHHHHHHHH
T ss_pred CCCcEEEEEEcCchhHHHHHHHHH
Confidence 9999999999986 6666666543
|
| >3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.91 E-value=4.4e-24 Score=265.57 Aligned_cols=153 Identities=22% Similarity=0.222 Sum_probs=132.8
Q ss_pred CccCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHHhh
Q psy15524 3 ITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCK 82 (930)
Q Consensus 3 ~~~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~ 82 (930)
+..|+|+|++|++.++.|++++++||||||||++|.+|++..+.. +.++||++||++|++|+++.+.+++.
T Consensus 182 ~f~ltp~Q~~AI~~i~~g~dvLV~ApTGSGKTlva~l~i~~~l~~---------g~rvlvl~PtraLa~Q~~~~l~~~~~ 252 (1108)
T 3l9o_A 182 PFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKN---------KQRVIYTSPIKALSNQKYRELLAEFG 252 (1108)
T ss_dssp SSCCCHHHHHHHHHHTTTCCEEEECCSSSHHHHHHHHHHHHHHHT---------TCEEEEEESSHHHHHHHHHHHHHHTS
T ss_pred CCCCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHHhc---------CCeEEEEcCcHHHHHHHHHHHHHHhC
Confidence 346999999999999999999999999999999999999988743 56799999999999999999999875
Q ss_pred hcCCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCcHHHHHHHHHHHh
Q psy15524 83 SFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILK 162 (930)
Q Consensus 83 ~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~~~~~~~i~~~l~ 162 (930)
.++.+.|+... ..+++|+|+||++|.+++.+ ....+.++++|||||||++.+++|+..+..++..++
T Consensus 253 -----~VglltGd~~~-------~~~~~IlV~Tpe~L~~~L~~-~~~~l~~l~lVVIDEaH~l~d~~rg~~~e~ii~~l~ 319 (1108)
T 3l9o_A 253 -----DVGLMTGDITI-------NPDAGCLVMTTEILRSMLYR-GSEVMREVAWVIFDEVHYMRDKERGVVWEETIILLP 319 (1108)
T ss_dssp -----SEEEECSSCBC-------CCSCSEEEEEHHHHHHHHHH-CSSHHHHEEEEEEETGGGTTSHHHHHHHHHHHHHSC
T ss_pred -----CccEEeCcccc-------CCCCCEEEeChHHHHHHHHc-CccccccCCEEEEhhhhhccccchHHHHHHHHHhcC
Confidence 45667777652 34689999999999999876 445578999999999999999999999988887664
Q ss_pred hcCCCceEEEEEeecCCC
Q psy15524 163 KQKPQFQSILLSATLTPA 180 (930)
Q Consensus 163 ~~~~~~~~i~lSAT~~~~ 180 (930)
+++|+++||||+++.
T Consensus 320 ---~~~qvl~lSATipn~ 334 (1108)
T 3l9o_A 320 ---DKVRYVFLSATIPNA 334 (1108)
T ss_dssp ---TTSEEEEEECSCSSC
T ss_pred ---CCceEEEEcCCCCCH
Confidence 567999999998763
|
| >1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=99.91 E-value=4.1e-24 Score=209.82 Aligned_cols=154 Identities=24% Similarity=0.457 Sum_probs=136.4
Q ss_pred CCCceEEEEEcCchhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHHHHHH
Q psy15524 622 PDSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTE 701 (930)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~ 701 (930)
+..+.|.|+.++...|...+..++... ...++||||++++.++.+++.|... ++.+..+||+|++.+|..
T Consensus 3 ~~~i~q~~~~~~~~~K~~~L~~ll~~~-------~~~~~lVF~~~~~~~~~l~~~L~~~---~~~~~~~hg~~~~~~r~~ 72 (172)
T 1t5i_A 3 LHGLQQYYVKLKDNEKNRKLFDLLDVL-------EFNQVVIFVKSVQRCIALAQLLVEQ---NFPAIAIHRGMPQEERLS 72 (172)
T ss_dssp --CCEEEEEECCGGGHHHHHHHHHHHS-------CCSSEEEECSSHHHHHHHHHHHHHT---TCCEEEECTTSCHHHHHH
T ss_pred cCCeEEEEEECChHHHHHHHHHHHHhC-------CCCcEEEEECCHHHHHHHHHHHHhc---CCCEEEEECCCCHHHHHH
Confidence 467899999999999999999888753 2579999999999999999999875 788899999999999999
Q ss_pred HHHHhhcCCCcEEEeccccccccCCCCccEEEEecCCCChhhHHhhhcccccCCCCceEEEEeCcc-cHHHHHHHHhc-C
Q psy15524 702 VFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPS-EVKLVEELQNR-R 779 (930)
Q Consensus 702 v~~~F~~~~~~vLv~T~~~~~GlDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~-e~~~~~~l~~~-~ 779 (930)
+++.|++|+.+|||||+++++|+|+|++++||+||+|.++.+|+||+||+||.|+.|.+++|+.+. +..+++.+.+. +
T Consensus 73 ~~~~f~~g~~~vLvaT~~~~~Gldi~~~~~Vi~~d~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~l~~~~~ 152 (172)
T 1t5i_A 73 RYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFE 152 (172)
T ss_dssp HHHHHHTTSCSEEEESSCCSTTCCGGGCSEEEESSCCSSHHHHHHHHHHHTGGGCCCEEEEEECSHHHHHHHHHHHHHHC
T ss_pred HHHHHHCCCCcEEEECCchhcCcchhhCCEEEEECCCCCHHHHHHHhcccccCCCCcEEEEEEcChhHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999999999999976 45677777653 4
Q ss_pred Cccchh
Q psy15524 780 IRIEEI 785 (930)
Q Consensus 780 ~~~~~~ 785 (930)
+++++.
T Consensus 153 ~~~~~~ 158 (172)
T 1t5i_A 153 VNISEL 158 (172)
T ss_dssp CCEEEC
T ss_pred cchhhC
Confidence 555444
|
| >4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=2.3e-23 Score=246.41 Aligned_cols=175 Identities=17% Similarity=0.210 Sum_probs=132.5
Q ss_pred CCCccCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHH
Q psy15524 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKL 80 (930)
Q Consensus 1 ~g~~~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~ 80 (930)
|+..+|+|+|.++++.++.|+|+++++|||+|||++|++|+++.+..... ..+.++|||+||++|+.|+.+.++++
T Consensus 3 ~~~~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~----~~~~~~lil~P~~~L~~q~~~~~~~~ 78 (556)
T 4a2p_A 3 METKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPA----GRKAKVVFLATKVPVYEQQKNVFKHH 78 (556)
T ss_dssp -----CCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCS----SCCCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHHhCcc----cCCCeEEEEeCCHHHHHHHHHHHHHH
Confidence 34568999999999999999999999999999999999999998865321 22567999999999999999999999
Q ss_pred hhhcCCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCcHHHH-HHHH-
Q psy15524 81 CKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDI-AEFL- 158 (930)
Q Consensus 81 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~~~~~-~~i~- 158 (930)
+...+ +.+..++|+.........+..+++|+|+||+++.+.+.......+.++++|||||||++.+++....+ ...+
T Consensus 79 ~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~ 157 (556)
T 4a2p_A 79 FERQG-YSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLE 157 (556)
T ss_dssp HGGGT-CCEEECCCC-----CHHHHHHHCSEEEECHHHHHHHHHSSSCCCSTTCSEEEEETGGGCSTTSHHHHHHHHHHH
T ss_pred hcccC-ceEEEEeCCCCcchhHHHhhCCCCEEEECHHHHHHHHHhCcccccccCCEEEEECCcccCCcchHHHHHHHHHH
Confidence 87654 67778888887666666666679999999999999987633337899999999999999988753333 1222
Q ss_pred HHHhhcCCCceEEEEEeecCCC
Q psy15524 159 EILKKQKPQFQSILLSATLTPA 180 (930)
Q Consensus 159 ~~l~~~~~~~~~i~lSAT~~~~ 180 (930)
..+....+.+++++||||++..
T Consensus 158 ~~~~~~~~~~~~l~lSAT~~~~ 179 (556)
T 4a2p_A 158 QKFNSASQLPQILGLTASVGVG 179 (556)
T ss_dssp HHHCC---CCEEEEEESCCCCT
T ss_pred hhhcccCCCCeEEEEeCCcccC
Confidence 2222335678999999999653
|
| >2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.91 E-value=8.9e-24 Score=208.53 Aligned_cols=154 Identities=24% Similarity=0.421 Sum_probs=133.3
Q ss_pred cCCCceEEEEEcCchh-hHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHHHH
Q psy15524 621 IPDSLKQHFIVTPPKL-RLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSER 699 (930)
Q Consensus 621 ~~~~~~~~~~~~~~~~-~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R 699 (930)
.+..+.|.|+.++... |...+..++... ..+++||||++++.++.+++.|... ++.+..+||+|++.+|
T Consensus 4 ~~~~i~q~~~~~~~~~~K~~~L~~ll~~~-------~~~~~lVF~~~~~~~~~l~~~L~~~---~~~~~~~~g~~~~~~R 73 (175)
T 2rb4_A 4 TLNNIRQYYVLCEHRKDKYQALCNIYGSI-------TIGQAIIFCQTRRNAKWLTVEMIQD---GHQVSLLSGELTVEQR 73 (175)
T ss_dssp CBCCEEEEEEECSSHHHHHHHHHHHHTTS-------CCSEEEEECSCHHHHHHHHHHHHTT---TCCEEEECSSCCHHHH
T ss_pred ccCCceEEEEEcCChHhHHHHHHHHHHhC-------CCCCEEEEECCHHHHHHHHHHHHHc---CCcEEEEeCCCCHHHH
Confidence 3567899999998766 888888777542 2579999999999999999999875 7889999999999999
Q ss_pred HHHHHHhhcCCCcEEEeccccccccCCCCccEEEEecCC------CChhhHHhhhcccccCCCCceEEEEeCcccHHHHH
Q psy15524 700 TEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAP------SSSTDYVHRVGRTARVGHEGSSLLFLIPSEVKLVE 773 (930)
Q Consensus 700 ~~v~~~F~~~~~~vLv~T~~~~~GlDip~v~~VI~~~~p------~s~~~y~qr~GRagR~g~~g~~~~~~~~~e~~~~~ 773 (930)
..+++.|++|+.+|||||+++++|+|+|++++||+||+| .+..+|+||+||+||.|+.|.+++|+.+.+..+++
T Consensus 74 ~~~~~~f~~g~~~vLvaT~~~~~Gid~~~~~~Vi~~d~p~~~~~~~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~~~ 153 (175)
T 2rb4_A 74 ASIIQRFRDGKEKVLITTNVCARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKKGLAFNMIEVDELPSLM 153 (175)
T ss_dssp HHHHHHHHTTSCSEEEECCSCCTTTCCTTEEEEEESSCCC--CCSCCHHHHHHHHCBC----CCEEEEEEECGGGHHHHH
T ss_pred HHHHHHHHcCCCeEEEEecchhcCCCcccCCEEEEeCCCCCccccCCHHHHHHHhcccccCCCCceEEEEEccchHHHHH
Confidence 999999999999999999999999999999999999999 99999999999999999999999999999988888
Q ss_pred HHHhc-CCccch
Q psy15524 774 ELQNR-RIRIEE 784 (930)
Q Consensus 774 ~l~~~-~~~~~~ 784 (930)
.+.+. +.++++
T Consensus 154 ~i~~~~~~~~~~ 165 (175)
T 2rb4_A 154 KIQDHFNSSIKQ 165 (175)
T ss_dssp HHHHHHTCCCEE
T ss_pred HHHHHhcCcccc
Confidence 88664 444433
|
| >2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.91 E-value=8.3e-24 Score=210.07 Aligned_cols=149 Identities=32% Similarity=0.497 Sum_probs=121.8
Q ss_pred ecCCCceEEEEEcCchhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHHHH
Q psy15524 620 VIPDSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSER 699 (930)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R 699 (930)
..+..+.|.+..++...|...|..++.... .+.++||||++++.++.+++.|... ++.+..+||+|++.+|
T Consensus 15 ~~~~~i~q~~~~v~~~~K~~~L~~ll~~~~------~~~k~lVF~~~~~~~~~l~~~L~~~---g~~~~~lhg~~~~~~r 85 (185)
T 2jgn_A 15 STSENITQKVVWVEESDKRSFLLDLLNATG------KDSLTLVFVETKKGADSLEDFLYHE---GYACTSIHGDRSQRDR 85 (185)
T ss_dssp -CCTTEEEEEEECCGGGHHHHHHHHHHHC-------CCSCEEEEESCHHHHHHHHHHHHHT---TCCEEEEC--------
T ss_pred CCCCCceEEEEEeCcHHHHHHHHHHHHhcC------CCCeEEEEECCHHHHHHHHHHHHHc---CCceEEEeCCCCHHHH
Confidence 346789999999999999999998887632 2679999999999999999999875 7889999999999999
Q ss_pred HHHHHHhhcCCCcEEEeccccccccCCCCccEEEEecCCCChhhHHhhhcccccCCCCceEEEEeCcccHHHHHHHHh
Q psy15524 700 TEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPSEVKLVEELQN 777 (930)
Q Consensus 700 ~~v~~~F~~~~~~vLv~T~~~~~GlDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~e~~~~~~l~~ 777 (930)
..+++.|++|+.+|||||+++++|+|+|++++||++|+|.++.+|+||+||+||.|+.|.+++|+.+.+..+++.+.+
T Consensus 86 ~~~~~~f~~g~~~vLvaT~~~~~Gldi~~~~~VI~~d~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~ 163 (185)
T 2jgn_A 86 EEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLD 163 (185)
T ss_dssp CHHHHHHHHTSSSEEEEEC------CCCSBSEEEESSCCSSHHHHHHHHTTBCCTTSCEEEEEEECGGGGGGHHHHHH
T ss_pred HHHHHHHHcCCCeEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHccccCCCCCCcEEEEEEchhhHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999998877666654
|
| >1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=99.91 E-value=1.5e-23 Score=204.71 Aligned_cols=145 Identities=26% Similarity=0.490 Sum_probs=127.2
Q ss_pred CCceEEEEEcCchh-hHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHHHHHH
Q psy15524 623 DSLKQHFIVTPPKL-RLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTE 701 (930)
Q Consensus 623 ~~~~~~~~~~~~~~-~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~ 701 (930)
..+.|.|..++... |...+..++... ..+++||||++++.++.+++.|... ++.+..+||+|++.+|..
T Consensus 2 ~~i~~~~~~~~~~~~K~~~l~~ll~~~-------~~~~~lVF~~~~~~~~~l~~~L~~~---~~~~~~~~~~~~~~~r~~ 71 (165)
T 1fuk_A 2 EGIKQFYVNVEEEEYKYECLTDLYDSI-------SVTQAVIFCNTRRKVEELTTKLRND---KFTVSAIYSDLPQQERDT 71 (165)
T ss_dssp --CEEEEEEEESGGGHHHHHHHHHHHT-------TCSCEEEEESSHHHHHHHHHHHHHT---TCCEEEECTTSCHHHHHH
T ss_pred CCcEEEEEECCcchhHHHHHHHHHHhC-------CCCCEEEEECCHHHHHHHHHHHHHc---CCCEEEEECCCCHHHHHH
Confidence 35788888888777 999888888753 2579999999999999999999875 778889999999999999
Q ss_pred HHHHhhcCCCcEEEeccccccccCCCCccEEEEecCCCChhhHHhhhcccccCCCCceEEEEeCcccHHHHHHHHh
Q psy15524 702 VFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPSEVKLVEELQN 777 (930)
Q Consensus 702 v~~~F~~~~~~vLv~T~~~~~GlDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~e~~~~~~l~~ 777 (930)
+++.|++|+.+|||||+++++|+|+|++++||++|+|.++.+|+||+||+||.|+.|.+++|+.+.+..+++.+.+
T Consensus 72 ~~~~f~~g~~~vlv~T~~~~~G~d~~~~~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~ 147 (165)
T 1fuk_A 72 IMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEK 147 (165)
T ss_dssp HHHHHHTTSCSEEEEEGGGTTTCCCCSCSEEEESSCCSSGGGGGGSSCSCC-----CEEEEEEETTTHHHHHHHHH
T ss_pred HHHHHHcCCCEEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEEcchHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999988888765
|
| >3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A | Back alignment and structure |
|---|
Probab=99.90 E-value=2.2e-23 Score=212.01 Aligned_cols=145 Identities=34% Similarity=0.537 Sum_probs=131.2
Q ss_pred CceEEEEEcCchhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHHHHHHHH
Q psy15524 624 SLKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVF 703 (930)
Q Consensus 624 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~v~ 703 (930)
.+.+.++.++...|+..+..++... .++++||||++++.++.+++.|... ++.+..+||+|++.+|..++
T Consensus 5 ~~~~~~~~~~~~~k~~~l~~ll~~~-------~~~~~lVF~~~~~~~~~l~~~L~~~---~~~~~~lhg~~~~~~r~~~~ 74 (212)
T 3eaq_A 5 TYEEEAVPAPVRGRLEVLSDLLYVA-------SPDRAMVFTRTKAETEEIAQGLLRL---GHPAQALHGDLSQGERERVL 74 (212)
T ss_dssp CBCCEEEECCTTSHHHHHHHHHHHH-------CCSCEEEECSSHHHHHHHHHHHHHH---TCCEEEECSSSCHHHHHHHH
T ss_pred ceeeeEEeCCHHHHHHHHHHHHHhC-------CCCeEEEEeCCHHHHHHHHHHHHHc---CCCEEEEECCCCHHHHHHHH
Confidence 4556777888899999999888643 1679999999999999999999875 78899999999999999999
Q ss_pred HHhhcCCCcEEEeccccccccCCCCccEEEEecCCCChhhHHhhhcccccCCCCceEEEEeCcccHHHHHHHHhc
Q psy15524 704 KTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPSEVKLVEELQNR 778 (930)
Q Consensus 704 ~~F~~~~~~vLv~T~~~~~GlDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~e~~~~~~l~~~ 778 (930)
+.|++|+.+|||||+++++|+|+|++++||++|+|.++..|+||+|||||.|+.|.|++|+++.+..+++.+.+.
T Consensus 75 ~~f~~g~~~vlvaT~~~~~Gidi~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~ 149 (212)
T 3eaq_A 75 GAFRQGEVRVLVATDVAARGLDIPQVDLVVHYRLPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERA 149 (212)
T ss_dssp HHHHSSSCCEEEECTTTTCSSSCCCBSEEEESSCCSSHHHHHHHHTTBCCCC--BEEEEEECGGGHHHHHHHHHH
T ss_pred HHHHCCCCeEEEecChhhcCCCCccCcEEEECCCCcCHHHHHHHhcccCCCCCCCeEEEEEchhHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999888888653
|
| >1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B* | Back alignment and structure |
|---|
Probab=99.90 E-value=3.1e-24 Score=267.29 Aligned_cols=238 Identities=18% Similarity=0.276 Sum_probs=170.4
Q ss_pred CCCccCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHH
Q psy15524 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKL 80 (930)
Q Consensus 1 ~g~~~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~ 80 (930)
+||. | ++|+++|+.++.|+|++++||||||||+ |.+|++..+.. .+.++|||+||++|+.|+++.++++
T Consensus 54 ~g~~-p-~iQ~~ai~~il~g~dvlv~apTGSGKTl-~~lp~l~~~~~--------~~~~~lil~PtreLa~Q~~~~l~~l 122 (1054)
T 1gku_B 54 VGEP-R-AIQKMWAKRILRKESFAATAPTGVGKTS-FGLAMSLFLAL--------KGKRCYVIFPTSLLVIQAAETIRKY 122 (1054)
T ss_dssp TCSC-C-HHHHHHHHHHHTTCCEECCCCBTSCSHH-HHHHHHHHHHT--------TSCCEEEEESCHHHHHHHHHHHHHH
T ss_pred cCCC-H-HHHHHHHHHHHhCCCEEEEcCCCCCHHH-HHHHHHHHHhh--------cCCeEEEEeccHHHHHHHHHHHHHH
Confidence 6898 9 9999999999999999999999999998 99999888754 2567999999999999999999999
Q ss_pred hhhcCCc----eeEEeeCCCchHHH---HHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCcHHH
Q psy15524 81 CKSFTWI----VPSWLTGGEKMKSE---KARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERD 153 (930)
Q Consensus 81 ~~~~~~~----~~~~~~g~~~~~~~---~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~~~~ 153 (930)
+...+ + .+..++|+.....+ ...+.. ++|+|+||++|.+++.+ ++++++|||||||+|++ ++.+
T Consensus 123 ~~~~~-i~~~~~v~~~~Gg~~~~~~~~~~~~l~~-~~IlV~TP~~L~~~l~~-----L~~l~~lViDEah~~l~--~~~~ 193 (1054)
T 1gku_B 123 AEKAG-VGTENLIGYYHGRIPKREKENFMQNLRN-FKIVITTTQFLSKHYRE-----LGHFDFIFVDDVDAILK--ASKN 193 (1054)
T ss_dssp HTTTC-CSGGGSEEECCSSCCSHHHHHHHHSGGG-CSEEEEEHHHHHHCSTT-----SCCCSEEEESCHHHHHT--STHH
T ss_pred HhhcC-CCccceEEEEeCCCChhhHHHHHhhccC-CCEEEEcHHHHHHHHHH-----hccCCEEEEeChhhhhh--cccc
Confidence 87665 4 67888888876653 344555 99999999999998764 67999999999999998 4567
Q ss_pred HHHHHHHHhhcCCCceEEEEEeecCCCccccccccccccccccchhhhhhhhhhhccchhhHHHHHHHHhhcCcCceEEE
Q psy15524 154 IAEFLEILKKQKPQFQSILLSATLTPATCWCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVL 233 (930)
Q Consensus 154 ~~~i~~~l~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~de~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~ 233 (930)
+..++..+... ..... ...+...|.++
T Consensus 194 ~~~i~~~lgf~----------~~~~~-------------------------------------------~~~~~~~q~~l 220 (1054)
T 1gku_B 194 VDKLLHLLGFH----------YDLKT-------------------------------------------KSWVGEARGCL 220 (1054)
T ss_dssp HHHHHHHTTEE----------EETTT-------------------------------------------TEEEECCSSEE
T ss_pred HHHHHHHhCcc----------hhhhh-------------------------------------------hhcccCCceEE
Confidence 77777666321 00000 00001124555
Q ss_pred EecccchHHHHhhhccccCCeeeccCCcccccCCCcccccCCCceeEEEEcCcchhHHHHHHHHhhhccccccCCcceEE
Q psy15524 234 LSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKML 313 (930)
Q Consensus 234 ~sat~~~~~~~l~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~i 313 (930)
||||++.. ..+...++.++..+.+.... ....++.+.+. ...|...|..++.. .+.++|
T Consensus 221 ~SAT~t~~-~~~~~~~~~~~~~i~v~~~~---------~~~~~i~~~~~---~~~k~~~L~~ll~~--------~~~~~L 279 (1054)
T 1gku_B 221 MVSTATAK-KGKKAELFRQLLNFDIGSSR---------ITVRNVEDVAV---NDESISTLSSILEK--------LGTGGI 279 (1054)
T ss_dssp EECCCCSC-CCTTHHHHHHHHCCCCSCCE---------ECCCCEEEEEE---SCCCTTTTHHHHTT--------SCSCEE
T ss_pred EEecCCCc-hhHHHHHhhcceEEEccCcc---------cCcCCceEEEe---chhHHHHHHHHHhh--------cCCCEE
Confidence 55555444 33333333333333222211 22345666665 35566667777732 257899
Q ss_pred EEEecccchhhhHHHHhhh
Q psy15524 314 VFMATQDMADYHTELLSTK 332 (930)
Q Consensus 314 VF~~s~~~~~~l~~~L~~~ 332 (930)
|||++++.|+.++..|+..
T Consensus 280 VF~~t~~~a~~l~~~L~~~ 298 (1054)
T 1gku_B 280 IYARTGEEAEEIYESLKNK 298 (1054)
T ss_dssp EEESSHHHHHHHHHTTTTS
T ss_pred EEEcCHHHHHHHHHHHhhc
Confidence 9999999999999999865
|
| >3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.1e-22 Score=240.63 Aligned_cols=171 Identities=16% Similarity=0.196 Sum_probs=137.3
Q ss_pred cCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHHhhhc
Q psy15524 5 QVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSF 84 (930)
Q Consensus 5 ~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~ 84 (930)
+|+|+|.++++.++.|+|+++++|||+|||++|++|+++.+..... ..+.++|||+||++|+.|+.+.+++++...
T Consensus 4 ~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~----~~~~~~lil~P~~~L~~q~~~~~~~~~~~~ 79 (555)
T 3tbk_A 4 KPRNYQLELALPAKKGKNTIICAPTGCGKTFVSLLICEHHLKKFPC----GQKGKVVFFANQIPVYEQQATVFSRYFERL 79 (555)
T ss_dssp CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCS----SCCCCEEEECSSHHHHHHHHHHHHHHHHTT
T ss_pred CCcHHHHHHHHHHhCCCCEEEEeCCCChHHHHHHHHHHHHHHhccc----CCCCEEEEEeCCHHHHHHHHHHHHHHhccC
Confidence 6999999999999999999999999999999999999998876321 225679999999999999999999998765
Q ss_pred CCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccC-cHHHHHHHHHHHhh
Q psy15524 85 TWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQG-YERDIAEFLEILKK 163 (930)
Q Consensus 85 ~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~-~~~~~~~i~~~l~~ 163 (930)
+ +.+..++|+.........+..+++|+|+||+++.+.+.......+.++++|||||||++.+.+ +...+...+.....
T Consensus 80 ~-~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~~ 158 (555)
T 3tbk_A 80 G-YNIASISGATSDSVSVQHIIEDNDIIILTPQILVNNLNNGAIPSLSVFTLMIFDECHNTSKNHPYNQIMFRYLDHKLG 158 (555)
T ss_dssp T-CCEEEECTTTGGGSCHHHHHHHCSEEEECHHHHHHHHHTSSSCCGGGCSEEEETTGGGCSTTCHHHHHHHHHHHHHTS
T ss_pred C-cEEEEEcCCCcchhhHHHHhcCCCEEEECHHHHHHHHhcCcccccccCCEEEEECccccCCcchHHHHHHHHHHhhhc
Confidence 4 678888888876666666666799999999999999876443368899999999999998875 22222222222211
Q ss_pred --cCCCceEEEEEeecCCC
Q psy15524 164 --QKPQFQSILLSATLTPA 180 (930)
Q Consensus 164 --~~~~~~~i~lSAT~~~~ 180 (930)
..+.+++++||||+...
T Consensus 159 ~~~~~~~~~l~lSAT~~~~ 177 (555)
T 3tbk_A 159 ESRDPLPQVVGLTASVGVG 177 (555)
T ss_dssp SCCSCCCEEEEEESCCCCT
T ss_pred cccCCCCeEEEEecCcccC
Confidence 13668999999999753
|
| >2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A | Back alignment and structure |
|---|
Probab=99.90 E-value=1.4e-23 Score=253.72 Aligned_cols=164 Identities=20% Similarity=0.257 Sum_probs=136.9
Q ss_pred CCCccCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHH
Q psy15524 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKL 80 (930)
Q Consensus 1 ~g~~~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~ 80 (930)
+||++|+|+|+++++.+.+|+|+++++|||||||++|.+|+++.+.. +.+++|++|+++|+.|++++++.+
T Consensus 21 ~g~~~l~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~~l~il~~~~~---------~~~~l~i~P~r~La~q~~~~~~~~ 91 (702)
T 2p6r_A 21 EGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIK---------GGKSLYVVPLRALAGEKYESFKKW 91 (702)
T ss_dssp C---CCCCCCHHHHHHHTTCSCEEEECSSHHHHHHHHHHHHHHHHHT---------TCCEEEEESSHHHHHHHHHHHTTT
T ss_pred CCCCCCCHHHHHHHHHHhCCCcEEEEcCCccHHHHHHHHHHHHHHHh---------CCcEEEEeCcHHHHHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999988753 456999999999999999999644
Q ss_pred hhhcCCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCcHHHHHHHHHH
Q psy15524 81 CKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEI 160 (930)
Q Consensus 81 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~~~~~~~i~~~ 160 (930)
. ..+ ..+....|+...... ....++|+|+|||++...+.+ ....++++++|||||+|++.+++++..+..++..
T Consensus 92 ~-~~g-~~v~~~~G~~~~~~~---~~~~~~Iiv~Tpe~l~~~l~~-~~~~l~~~~~vIiDE~H~l~~~~r~~~~~~ll~~ 165 (702)
T 2p6r_A 92 E-KIG-LRIGISTGDYESRDE---HLGDCDIIVTTSEKADSLIRN-RASWIKAVSCLVVDEIHLLDSEKRGATLEILVTK 165 (702)
T ss_dssp T-TTT-CCEEEECSSCBCCSS---CSTTCSEEEEEHHHHHHHHHT-TCSGGGGCCEEEETTGGGGGCTTTHHHHHHHHHH
T ss_pred H-hcC-CEEEEEeCCCCcchh---hccCCCEEEECHHHHHHHHHc-ChhHHhhcCEEEEeeeeecCCCCcccHHHHHHHH
Confidence 3 233 667777777654322 123689999999999998876 4444789999999999999999999999999999
Q ss_pred HhhcCCCceEEEEEeecCC
Q psy15524 161 LKKQKPQFQSILLSATLTP 179 (930)
Q Consensus 161 l~~~~~~~~~i~lSAT~~~ 179 (930)
++...+++|++++|||+++
T Consensus 166 l~~~~~~~~ii~lSATl~n 184 (702)
T 2p6r_A 166 MRRMNKALRVIGLSATAPN 184 (702)
T ss_dssp HHHHCTTCEEEEEECCCTT
T ss_pred HHhcCcCceEEEECCCcCC
Confidence 9877788999999999975
|
| >4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.9e-22 Score=247.10 Aligned_cols=174 Identities=17% Similarity=0.205 Sum_probs=134.3
Q ss_pred CCCccCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHH
Q psy15524 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKL 80 (930)
Q Consensus 1 ~g~~~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~ 80 (930)
+|+..|+|+|.++++.++.|+|+++++|||+|||++|++|++..+..... ..+.++|||+|+++|+.|+++.++++
T Consensus 244 ~g~~~l~~~Q~~~i~~~l~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~----~~~~~~Lvl~Pt~~L~~Q~~~~~~~~ 319 (797)
T 4a2q_A 244 YETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPA----GRKAKVVFLATKVPVYEQQKNVFKHH 319 (797)
T ss_dssp ----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCS----SCCCCEEEECSSHHHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHhCCCEEEEeCCCChHHHHHHHHHHHHHHhccc----cCCCeEEEEeCCHHHHHHHHHHHHHh
Confidence 47889999999999999999999999999999999999999998876321 22567999999999999999999999
Q ss_pred hhhcCCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCcHHH-HHHHHH
Q psy15524 81 CKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERD-IAEFLE 159 (930)
Q Consensus 81 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~~~~-~~~i~~ 159 (930)
+...+ +.+..++|+.........+..+++|+|+||+++.+.+.......+.++++|||||||++.+.+.... +..++.
T Consensus 320 ~~~~~-~~v~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEaH~~~~~~~~~~i~~~~~~ 398 (797)
T 4a2q_A 320 FERQG-YSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLE 398 (797)
T ss_dssp HGGGT-CCEEEECCC-----CHHHHHHTCSEEEECHHHHHHHHHSSSCCCGGGCSEEEETTGGGCSTTSHHHHHHHHHHH
T ss_pred cccCC-ceEEEEeCCcchhhhHHHhhCCCCEEEEchHHHHHHHHhccccccccCCEEEEECccccCCCccHHHHHHHHHH
Confidence 87654 6788888888776666667778999999999999998763333688999999999999987653222 222222
Q ss_pred -HHhhcCCCceEEEEEeecCC
Q psy15524 160 -ILKKQKPQFQSILLSATLTP 179 (930)
Q Consensus 160 -~l~~~~~~~~~i~lSAT~~~ 179 (930)
.+....+.+++++||||+..
T Consensus 399 ~~~~~~~~~~~~l~lSATp~~ 419 (797)
T 4a2q_A 399 QKFNSASQLPQILGLTASVGV 419 (797)
T ss_dssp HHHTTCCCCCEEEEEESCCCC
T ss_pred HhhccCCCCCeEEEEcCCccc
Confidence 12223567899999999964
|
| >1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A | Back alignment and structure |
|---|
Probab=99.90 E-value=1.7e-23 Score=243.96 Aligned_cols=302 Identities=16% Similarity=0.172 Sum_probs=193.0
Q ss_pred CCCccCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHH
Q psy15524 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKL 80 (930)
Q Consensus 1 ~g~~~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~ 80 (930)
+|| .|+|+|..++|.++.|+ ++.++||+|||++|.+|++..... |..++||+||++||.|.++.+..+
T Consensus 80 lG~-~pt~VQ~~~ip~ll~G~--Iaea~TGeGKTlaf~LP~~l~aL~---------g~~vlVltptreLA~qd~e~~~~l 147 (844)
T 1tf5_A 80 TGM-FPFKVQLMGGVALHDGN--IAEMKTGEGKTLTSTLPVYLNALT---------GKGVHVVTVNEYLASRDAEQMGKI 147 (844)
T ss_dssp HSC-CCCHHHHHHHHHHHTTS--EEECCTTSCHHHHHHHHHHHHHTT---------SSCEEEEESSHHHHHHHHHHHHHH
T ss_pred cCC-CCcHHHHHhhHHHhCCC--EEEccCCcHHHHHHHHHHHHHHHc---------CCCEEEEeCCHHHHHHHHHHHHHH
Confidence 488 89999999999999998 999999999999999999854322 446999999999999999999999
Q ss_pred hhhcCCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHH-HHHHhcC-----CCccCCCccEEEEccccccc-ccC----
Q psy15524 81 CKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRL-LDHCKHT-----ETLKFSKVEHLVLDEADRIL-DQG---- 149 (930)
Q Consensus 81 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l-~~~l~~~-----~~~~l~~l~~vViDE~h~~~-~~~---- 149 (930)
+..++ +.+.+++||.+.... ....++||+||||++| .+++... ..+.++.+.++||||||.|+ |.+
T Consensus 148 ~~~lg-l~v~~i~gg~~~~~r--~~~~~~dIv~gTpgrlgfD~L~D~m~~~~~~l~lr~~~~lVlDEaD~mLiDea~tpl 224 (844)
T 1tf5_A 148 FEFLG-LTVGLNLNSMSKDEK--REAYAADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVDSILIDEARTPL 224 (844)
T ss_dssp HHHTT-CCEEECCTTSCHHHH--HHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEETHHHHHTTTTTCEE
T ss_pred HhhcC-CeEEEEeCCCCHHHH--HHhcCCCEEEECchhhhHHHHHHhhhcchhhhcccCCCEEEECchhhhhhhccccch
Confidence 98776 788889998765433 3334699999999999 5554431 24567899999999999998 664
Q ss_pred -----------cHHHHHHHHHHHhhc------CCCceEE-----------------EEEeecCCCcccccc---cccccc
Q psy15524 150 -----------YERDIAEFLEILKKQ------KPQFQSI-----------------LLSATLTPATCWCKH---TETLKF 192 (930)
Q Consensus 150 -----------~~~~~~~i~~~l~~~------~~~~~~i-----------------~lSAT~~~~~~~~~~---~~~~~~ 192 (930)
|..++..++..++.. ..+.|++ ++|||.+....+... ...+.-
T Consensus 225 Iisg~~~~~~~~~~~i~~iv~~l~~~~~y~vd~k~rq~~lt~~g~~~~e~~~~i~~Lfsat~~~~~~~i~~al~A~~l~~ 304 (844)
T 1tf5_A 225 IISGQAAKSTKLYVQANAFVRTLKAEKDYTYDIKTKAVQLTEEGMTKAEKAFGIDNLFDVKHVALNHHINQALKAHVAMQ 304 (844)
T ss_dssp EEEEEEECCCHHHHHHHHHHTTCCSSSSBCCCSSSCCCCBCHHHHHHHHHHTTCSCTTSGGGHHHHHHHHHHHHHHHTCC
T ss_pred hhcCCcccchhHHHHHHHHHHhCcccccceeccccceEEecHHHHHHHHHHhCccccCCCccchhHHHHHHHHHHHHHhh
Confidence 567777777777520 1234555 778875421100000 000000
Q ss_pred ccccch-------hhhhh-hhhh-hccchhhHHHHHHHHhhc------------------CcCceEEEEecccchHHHHh
Q psy15524 193 SKVEHL-------VLDEA-DRIL-DQGYERDIAEFLEILKKQ------------------KPQFQSVLLSATLTPAVQRL 245 (930)
Q Consensus 193 ~~~~~~-------~~de~-~~~~-~~~~~~~~~~~~~~~~~~------------------~~~~q~~~~sat~~~~~~~l 245 (930)
.++.++ ++||. .+++ +..+.+.+...++.-... ........++.|.......+
T Consensus 305 ~d~dYiv~dg~v~ivDe~tgr~m~grr~sdGLhqaieake~v~I~~e~~t~a~It~q~~fr~y~kl~GmTGTa~te~~e~ 384 (844)
T 1tf5_A 305 KDVDYVVEDGQVVIVDSFTGRLMKGRRYSEGLHQAIEAKEGLEIQNESMTLATITFQNYFRMYEKLAGMTGTAKTEEEEF 384 (844)
T ss_dssp BTTTEEEETTEEEEBCTTTCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEEEHHHHHTTSSEEEEEESCCGGGHHHH
T ss_pred cCCceEEecCeeEEeecccccccCCCccchhhHHHHhhcccceecccccccceeeHHHHHHHHhhhccCCcccchhHHHH
Confidence 011111 12221 1111 112222222222110000 00114566788887777777
Q ss_pred hhccccCCeeeccCCcccccCCCcccccCCCce-eEEEEcCcchhHHHHHHHHhhhccccccCCcceEEEEEecccchhh
Q psy15524 246 AGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLK-QHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADY 324 (930)
Q Consensus 246 ~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~iVF~~s~~~~~~ 324 (930)
...|.-+.+.+ ..... ..... +.++.+...+|..++...+.. ....+.++||||+|+..++.
T Consensus 385 ~~iY~l~vv~I--Ptn~p----------~~r~d~~d~v~~~~~~K~~al~~~i~~-----~~~~~~pvLVft~s~~~se~ 447 (844)
T 1tf5_A 385 RNIYNMQVVTI--PTNRP----------VVRDDRPDLIYRTMEGKFKAVAEDVAQ-----RYMTGQPVLVGTVAVETSEL 447 (844)
T ss_dssp HHHHCCCEEEC--CCSSC----------CCCEECCCEEESSHHHHHHHHHHHHHH-----HHHHTCCEEEEESCHHHHHH
T ss_pred HHHhCCceEEe--cCCCC----------cccccCCcEEEeCHHHHHHHHHHHHHH-----HHhcCCcEEEEECCHHHHHH
Confidence 66663332222 11110 01111 224556778899999888843 12346789999999999999
Q ss_pred hHHHHhhhhh
Q psy15524 325 HTELLSTKKK 334 (930)
Q Consensus 325 l~~~L~~~~~ 334 (930)
++..|+..|-
T Consensus 448 Ls~~L~~~gi 457 (844)
T 1tf5_A 448 ISKLLKNKGI 457 (844)
T ss_dssp HHHHHHTTTC
T ss_pred HHHHHHHCCC
Confidence 9999987653
|
| >2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.90 E-value=6e-23 Score=253.19 Aligned_cols=153 Identities=22% Similarity=0.234 Sum_probs=132.4
Q ss_pred CCCccCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHH
Q psy15524 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKL 80 (930)
Q Consensus 1 ~g~~~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~ 80 (930)
+||+ |+|+|.+|++.+.+|+++++++|||||||++|.++++..+.. +.++||++|+++|++|+++.+.+.
T Consensus 83 ~~f~-L~~~Q~eai~~l~~g~~vLV~apTGSGKTlva~lai~~~l~~---------g~rvL~l~PtkaLa~Q~~~~l~~~ 152 (1010)
T 2xgj_A 83 YPFT-LDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKN---------KQRVIYTSPIKALSNQKYRELLAE 152 (1010)
T ss_dssp CSSC-CCHHHHHHHHHHHHTCEEEEECCTTSCHHHHHHHHHHHHHHT---------TCEEEEEESSHHHHHHHHHHHHHH
T ss_pred CCCC-CCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHhcc---------CCeEEEECChHHHHHHHHHHHHHH
Confidence 4675 999999999999999999999999999999999999887743 567999999999999999999998
Q ss_pred hhhcCCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCcHHHHHHHHHH
Q psy15524 81 CKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEI 160 (930)
Q Consensus 81 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~~~~~~~i~~~ 160 (930)
+. .++.++|+.... .+++|+|+||++|.+++.+ ....+.++++|||||+|++.+++++..+..++..
T Consensus 153 ~~-----~vglltGd~~~~-------~~~~IvV~Tpe~L~~~L~~-~~~~l~~l~lVViDEaH~l~d~~rg~~~e~il~~ 219 (1010)
T 2xgj_A 153 FG-----DVGLMTGDITIN-------PDAGCLVMTTEILRSMLYR-GSEVMREVAWVIFDEVHYMRDKERGVVWEETIIL 219 (1010)
T ss_dssp HS-----CEEEECSSCEEC-------TTCSEEEEEHHHHHHHHHH-TCTTGGGEEEEEEETGGGGGCTTTHHHHHHHHHH
T ss_pred hC-----CEEEEeCCCccC-------CCCCEEEEcHHHHHHHHHc-CcchhhcCCEEEEechhhhcccchhHHHHHHHHh
Confidence 75 456677776543 3579999999999998875 4556789999999999999999999888888776
Q ss_pred HhhcCCCceEEEEEeecCC
Q psy15524 161 LKKQKPQFQSILLSATLTP 179 (930)
Q Consensus 161 l~~~~~~~~~i~lSAT~~~ 179 (930)
++ +++++++||||+++
T Consensus 220 l~---~~~~il~LSATi~n 235 (1010)
T 2xgj_A 220 LP---DKVRYVFLSATIPN 235 (1010)
T ss_dssp SC---TTCEEEEEECCCTT
T ss_pred cC---CCCeEEEEcCCCCC
Confidence 64 56799999999876
|
| >2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.1e-22 Score=246.79 Aligned_cols=161 Identities=24% Similarity=0.293 Sum_probs=135.4
Q ss_pred CCCccCcHHHHHHHHH-hhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHH
Q psy15524 1 MNITQVTTVQQLSIQP-ILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTK 79 (930)
Q Consensus 1 ~g~~~l~~~Q~~ai~~-~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~ 79 (930)
+||++|+|+|.++++. +.+|++++++||||||||++|.+++++.+.. .+.+++|++|+++|+.|++++++.
T Consensus 26 ~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~--------~~~~il~i~P~r~La~q~~~~~~~ 97 (715)
T 2va8_A 26 RGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLK--------NGGKAIYVTPLRALTNEKYLTFKD 97 (715)
T ss_dssp TSCCBCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHHH--------SCSEEEEECSCHHHHHHHHHHHGG
T ss_pred CCCCCCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHH--------CCCeEEEEeCcHHHHHHHHHHHHH
Confidence 4899999999999999 7889999999999999999999999988764 246799999999999999999954
Q ss_pred HhhhcCCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCcHHHHHHHHH
Q psy15524 80 LCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLE 159 (930)
Q Consensus 80 ~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~~~~~~~i~~ 159 (930)
+. ..+ ..+....|+...... .+ ..++|+|+|||++...+.+ ....++++++|||||+|++.+++++..+..++.
T Consensus 98 ~~-~~g-~~v~~~~G~~~~~~~--~~-~~~~Iiv~Tpe~l~~~~~~-~~~~l~~~~~vIiDE~H~l~~~~~~~~l~~i~~ 171 (715)
T 2va8_A 98 WE-LIG-FKVAMTSGDYDTDDA--WL-KNYDIIITTYEKLDSLWRH-RPEWLNEVNYFVLDELHYLNDPERGPVVESVTI 171 (715)
T ss_dssp GG-GGT-CCEEECCSCSSSCCG--GG-GGCSEEEECHHHHHHHHHH-CCGGGGGEEEEEECSGGGGGCTTTHHHHHHHHH
T ss_pred hh-cCC-CEEEEEeCCCCCchh--hc-CCCCEEEEcHHHHHHHHhC-ChhHhhccCEEEEechhhcCCcccchHHHHHHH
Confidence 43 333 567777777654332 12 3689999999999998876 444478999999999999998899999999988
Q ss_pred HHhhcCCCceEEEEEeecCC
Q psy15524 160 ILKKQKPQFQSILLSATLTP 179 (930)
Q Consensus 160 ~l~~~~~~~~~i~lSAT~~~ 179 (930)
.++ ++|++++|||+++
T Consensus 172 ~~~----~~~ii~lSATl~n 187 (715)
T 2va8_A 172 RAK----RRNLLALSATISN 187 (715)
T ss_dssp HHH----TSEEEEEESCCTT
T ss_pred hcc----cCcEEEEcCCCCC
Confidence 887 6799999999975
|
| >2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=3.2e-23 Score=240.79 Aligned_cols=301 Identities=16% Similarity=0.130 Sum_probs=168.4
Q ss_pred CCccCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHHh
Q psy15524 2 NITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLC 81 (930)
Q Consensus 2 g~~~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~ 81 (930)
|. .|+|+|..+++.++.|+ ++.++||+|||++|.+|++..... +.+++||+||++||.|.++.+..++
T Consensus 72 g~-~p~~VQ~~~i~~ll~G~--Iaem~TGsGKTlaf~LP~l~~~l~---------g~~vlVltPTreLA~Q~~e~~~~l~ 139 (853)
T 2fsf_A 72 GM-RHFDVQLLGGMVLNERC--IAEMRTGEGKTLTATLPAYLNALT---------GKGVHVVTVNDYLAQRDAENNRPLF 139 (853)
T ss_dssp SC-CCCHHHHHHHHHHHSSE--EEECCTTSCHHHHHHHHHHHHHTT---------SSCCEEEESSHHHHHHHHHHHHHHH
T ss_pred CC-CCChHHHhhcccccCCe--eeeecCCchHHHHHHHHHHHHHHc---------CCcEEEEcCCHHHHHHHHHHHHHHH
Confidence 54 69999999999999997 999999999999999999865432 4569999999999999999999999
Q ss_pred hhcCCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHH-HHHHhcC-----CCccCCCccEEEEccccccc-ccC-----
Q psy15524 82 KSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRL-LDHCKHT-----ETLKFSKVEHLVLDEADRIL-DQG----- 149 (930)
Q Consensus 82 ~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l-~~~l~~~-----~~~~l~~l~~vViDE~h~~~-~~~----- 149 (930)
..++ +.+.+++||.+.. .+.+..++||+||||+++ .+++... ..+.++++.++||||||.|+ +.+
T Consensus 140 ~~lg-l~v~~i~GG~~~~--~r~~~~~~dIvvgTpgrl~fDyLrd~~~~~~~~~~~~~l~~lVlDEaD~mLiD~a~tpLI 216 (853)
T 2fsf_A 140 EFLG-LTVGINLPGMPAP--AKREAYAADITYGTNNEYGFDYLRDNMAFSPEERVQRKLHYALVDEVDSILIDEARTPLI 216 (853)
T ss_dssp HHTT-CCEEECCTTCCHH--HHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCSCCEEEESCHHHHTTTTTTCEEE
T ss_pred HhcC-CeEEEEeCCCCHH--HHHHhcCCCEEEECCchhhHHHHHhhhhccHhHhcccCCcEEEECchHHHHHhcCccccc
Confidence 8876 7888899997754 333444699999999999 6776642 13557899999999999998 543
Q ss_pred ----------cHHHHHHHHHHHhhcC-----------------CCceEE------------------------EEEeecC
Q psy15524 150 ----------YERDIAEFLEILKKQK-----------------PQFQSI------------------------LLSATLT 178 (930)
Q Consensus 150 ----------~~~~~~~i~~~l~~~~-----------------~~~~~i------------------------~lSAT~~ 178 (930)
|...+..++..++... .+.|++ ++|||.+
T Consensus 217 iSg~~~~~~~~y~~i~~iv~~L~~~~~~~~~~~~~~~dy~vdek~rqv~lte~g~~~~e~~l~~~~l~~~~~~Lfsat~~ 296 (853)
T 2fsf_A 217 ISGPAEDSSEMYKRVNKIIPHLIRQEKEDSETFQGEGHFSVDEKSRQVNLTERGLVLIEELLVKEGIMDEGESLYSPANI 296 (853)
T ss_dssp EEEC----------------------------------------------------------------------------
T ss_pred ccCCCccchhHHHHHHHHHHhchhhhccccccccccccceeccccceEEEcHHHHHHHHHHHHhCCcccccccccCcccc
Confidence 5677788888776410 122332 7888865
Q ss_pred CCcccccc---ccccccccccchh-------hhhh-hhhhh-ccchhhHHHHHH---HHhhc---------------CcC
Q psy15524 179 PATCWCKH---TETLKFSKVEHLV-------LDEA-DRILD-QGYERDIAEFLE---ILKKQ---------------KPQ 228 (930)
Q Consensus 179 ~~~~~~~~---~~~~~~~~~~~~~-------~de~-~~~~~-~~~~~~~~~~~~---~~~~~---------------~~~ 228 (930)
....+... ...+.-.++.+++ +||. .+++. ..+.+.+...++ .+.-. ...
T Consensus 297 ~~~~~i~~al~A~~l~~~d~dYiV~d~~vviVde~tgR~m~grr~sdGLhQaieake~v~I~~e~~tla~It~qnyfr~Y 376 (853)
T 2fsf_A 297 MLMHHVTAALRAHALFTRDVDYIVKDGEVIIVDEHTGRTMQGRRWSDGLHQAVEAKEGVQIQNENQTLASITFQNYFRLY 376 (853)
T ss_dssp ------------------------------------------------------------CCCCCEEEEEEEHHHHHTTS
T ss_pred hHHHHHHHHHHHHHHhhcCccceeecCcEEEEecccCcccCCCccchhhhHHHHhcccceecccccccceeehHHHHhhh
Confidence 42222110 0111111222222 2221 11111 111111111100 00000 001
Q ss_pred ceEEEEecccchHHHHhhhccccCCeeeccCCcccccCCCcccccCCCc-eeEEEEcCcchhHHHHHHHHhhhccccccC
Q psy15524 229 FQSVLLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSL-KQHFIVTPPKLRLVALASFILGKCQNVNED 307 (930)
Q Consensus 229 ~q~~~~sat~~~~~~~l~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~i-~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~ 307 (930)
.....++.|.......+...|--+ .+.+.... . .... ...++.+....|..++...+.. ...
T Consensus 377 ~kl~GmTGTa~te~~ef~~iY~l~--vv~IPtn~---------p-~~R~d~~d~v~~~~~~K~~al~~~i~~-----~~~ 439 (853)
T 2fsf_A 377 EKLAGMTGTADTEAFEFSSIYKLD--TVVVPTNR---------P-MIRKDLPDLVYMTEAEKIQAIIEDIKE-----RTA 439 (853)
T ss_dssp SEEEEEECTTCCCHHHHHHHHCCE--EEECCCSS---------C-CCCEECCCEEESSHHHHHHHHHHHHHH-----HHT
T ss_pred hhhhcCCCCchhHHHHHHHHhCCc--EEEcCCCC---------C-ceeecCCcEEEeCHHHHHHHHHHHHHH-----Hhc
Confidence 145566777766666666665322 22222211 0 0111 1234566778899999988843 234
Q ss_pred CcceEEEEEecccchhhhHHHHhhhhh
Q psy15524 308 EESKMLVFMATQDMADYHTELLSTKKK 334 (930)
Q Consensus 308 ~~~~~iVF~~s~~~~~~l~~~L~~~~~ 334 (930)
.+.|+||||+|+..++.++..|+..|-
T Consensus 440 ~gqpvLVft~sie~se~Ls~~L~~~gi 466 (853)
T 2fsf_A 440 KGQPVLVGTISIEKSELVSNELTKAGI 466 (853)
T ss_dssp TTCCEEEEESSHHHHHHHHHHHHHTTC
T ss_pred CCCCEEEEECcHHHHHHHHHHHHHCCC
Confidence 568999999999999999999988654
|
| >2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=6.6e-23 Score=248.64 Aligned_cols=162 Identities=27% Similarity=0.297 Sum_probs=137.2
Q ss_pred CCCccCcHHHHHHHHH-hhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHH
Q psy15524 1 MNITQVTTVQQLSIQP-ILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTK 79 (930)
Q Consensus 1 ~g~~~l~~~Q~~ai~~-~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~ 79 (930)
+||++|+|+|.++++. +.+|+|+++++|||||||++|.+|+++.+... +.+++|++|+++|+.|+++++++
T Consensus 19 ~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~--------~~~~l~i~P~raLa~q~~~~~~~ 90 (720)
T 2zj8_A 19 RGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILTQ--------GGKAVYIVPLKALAEEKFQEFQD 90 (720)
T ss_dssp TTCCBCCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHHHHHHHH--------CSEEEEECSSGGGHHHHHHHTGG
T ss_pred CCCCCCCHHHHHHHHHHhcCCCcEEEEcCCccHHHHHHHHHHHHHHHhC--------CCEEEEEcCcHHHHHHHHHHHHH
Confidence 4899999999999998 88999999999999999999999999888642 46799999999999999999965
Q ss_pred HhhhcCCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCcHHHHHHHHH
Q psy15524 80 LCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLE 159 (930)
Q Consensus 80 ~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~~~~~~~i~~ 159 (930)
+.. .+ +.+..++|+...... ....++|+|+||+++...+.+ ....++++++|||||+|++.+++++..+..++.
T Consensus 91 l~~-~g-~~v~~~~G~~~~~~~---~~~~~~Iiv~Tpe~l~~~~~~-~~~~l~~~~~vIiDE~H~l~~~~r~~~~~~ll~ 164 (720)
T 2zj8_A 91 WEK-IG-LRVAMATGDYDSKDE---WLGKYDIIIATAEKFDSLLRH-GSSWIKDVKILVADEIHLIGSRDRGATLEVILA 164 (720)
T ss_dssp GGG-GT-CCEEEECSCSSCCCG---GGGGCSEEEECHHHHHHHHHH-TCTTGGGEEEEEEETGGGGGCTTTHHHHHHHHH
T ss_pred HHh-cC-CEEEEecCCCCcccc---ccCCCCEEEECHHHHHHHHHc-ChhhhhcCCEEEEECCcccCCCcccHHHHHHHH
Confidence 443 33 677778886554322 124689999999999988776 444478999999999999999999999999999
Q ss_pred HHhhcCCCceEEEEEeecCC
Q psy15524 160 ILKKQKPQFQSILLSATLTP 179 (930)
Q Consensus 160 ~l~~~~~~~~~i~lSAT~~~ 179 (930)
.++. ++|++++|||+++
T Consensus 165 ~l~~---~~~ii~lSATl~n 181 (720)
T 2zj8_A 165 HMLG---KAQIIGLSATIGN 181 (720)
T ss_dssp HHBT---TBEEEEEECCCSC
T ss_pred Hhhc---CCeEEEEcCCcCC
Confidence 9874 6899999999976
|
| >4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A | Back alignment and structure |
|---|
Probab=99.89 E-value=3.8e-23 Score=255.03 Aligned_cols=157 Identities=21% Similarity=0.237 Sum_probs=132.6
Q ss_pred CCCccCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHH
Q psy15524 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKL 80 (930)
Q Consensus 1 ~g~~~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~ 80 (930)
+|| +|+|+|.++++.+++|+|+++++|||||||++|++++...+.. +.++||++|+++|+.|+++++++.
T Consensus 36 ~~f-~l~~~Q~~aI~~il~g~~vlv~apTGsGKTlv~~~~i~~~~~~---------g~~vlvl~PtraLa~Q~~~~l~~~ 105 (997)
T 4a4z_A 36 WPF-ELDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMAHRN---------MTKTIYTSPIKALSNQKFRDFKET 105 (997)
T ss_dssp CSS-CCCHHHHHHHHHHHTTCEEEEECCTTSCSHHHHHHHHHHHHHT---------TCEEEEEESCGGGHHHHHHHHHTT
T ss_pred CCC-CCCHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHHHHHhc---------CCeEEEEeCCHHHHHHHHHHHHHH
Confidence 456 4899999999999999999999999999999999999876543 567999999999999999999887
Q ss_pred hhhcCCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCcHHHHHHHHHH
Q psy15524 81 CKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEI 160 (930)
Q Consensus 81 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~~~~~~~i~~~ 160 (930)
+. ...+..++|+.... ..++|+|+||++|.+++.. ....+.++++|||||||++.+++|+..+..++..
T Consensus 106 ~~---~~~v~~l~G~~~~~-------~~~~IlV~Tpe~L~~~l~~-~~~~l~~l~lvViDEaH~l~d~~~g~~~e~ii~~ 174 (997)
T 4a4z_A 106 FD---DVNIGLITGDVQIN-------PDANCLIMTTEILRSMLYR-GADLIRDVEFVIFDEVHYVNDQDRGVVWEEVIIM 174 (997)
T ss_dssp C-----CCEEEECSSCEEC-------TTSSEEEEEHHHHHHHHHH-TCSGGGGEEEEEECCTTCCCTTCTTCCHHHHHHH
T ss_pred cC---CCeEEEEeCCCccC-------CCCCEEEECHHHHHHHHHh-CchhhcCCCEEEEECcccccccchHHHHHHHHHh
Confidence 53 36677788876532 4579999999999998875 4455789999999999999999999888888776
Q ss_pred HhhcCCCceEEEEEeecCCCc
Q psy15524 161 LKKQKPQFQSILLSATLTPAT 181 (930)
Q Consensus 161 l~~~~~~~~~i~lSAT~~~~~ 181 (930)
++ +++++++||||+++..
T Consensus 175 l~---~~v~iIlLSAT~~n~~ 192 (997)
T 4a4z_A 175 LP---QHVKFILLSATVPNTY 192 (997)
T ss_dssp SC---TTCEEEEEECCCTTHH
T ss_pred cc---cCCCEEEEcCCCCChH
Confidence 64 5679999999998643
|
| >3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.3e-22 Score=215.85 Aligned_cols=144 Identities=35% Similarity=0.540 Sum_probs=128.8
Q ss_pred ceEEEEEcCchhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHHHHHHHHH
Q psy15524 625 LKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFK 704 (930)
Q Consensus 625 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~v~~ 704 (930)
+.+.++.++...|+..+..++.... ++++||||++++.++.+++.|... ++.+..+||+|++.+|..+++
T Consensus 3 v~~~~i~~~~~~K~~~L~~ll~~~~-------~~~~LVF~~t~~~~~~l~~~L~~~---g~~~~~lhg~l~~~~r~~~~~ 72 (300)
T 3i32_A 3 YEEEAVPAPVRGRLEVLSDLLYVAS-------PDRAMVFTRTKAETEEIAQGLLRL---GHPAQALHGDMSQGERERVMG 72 (300)
T ss_dssp SEEEEEECCSSSHHHHHHHHHHHHC-------CSSEEEECSSHHHHHHHHHHHHTT---TCCEEEECSCCCTHHHHHHHH
T ss_pred eEEEEEECCHHHHHHHHHHHHHhcC-------CCCEEEEECCHHHHHHHHHHHHhC---CCCEEEEeCCCCHHHHHHHHH
Confidence 5778889999999999998886542 679999999999999999999874 788999999999999999999
Q ss_pred HhhcCCCcEEEeccccccccCCCCccEEEEecCCCChhhHHhhhcccccCCCCceEEEEeCcccHHHHHHHHhc
Q psy15524 705 TFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPSEVKLVEELQNR 778 (930)
Q Consensus 705 ~F~~~~~~vLv~T~~~~~GlDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~e~~~~~~l~~~ 778 (930)
.|++|+.+|||||+++++|+|+|++++||+||.|.+...|+||+|||||.|++|.|++|+++.+..+++.+.+.
T Consensus 73 ~f~~g~~~vLVaT~va~~Gidi~~v~~VI~~d~p~s~~~y~Qr~GRagR~g~~G~~i~l~~~~e~~~~~~ie~~ 146 (300)
T 3i32_A 73 AFRQGEVRVLVATDVAARGLDIPQVDLVVHYRMPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERA 146 (300)
T ss_dssp HHHHTSCCEEEECSTTTCSTTCCCCSEEEESSCCSSTTHHHHHHTCCC-----CEEEEEECSSTHHHHHHHHHH
T ss_pred HhhcCCceEEEEechhhcCccccceeEEEEcCCCCCHHHHHHHccCcCcCCCCceEEEEeChHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999888888653
|
| >1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A | Back alignment and structure |
|---|
Probab=99.88 E-value=2.1e-22 Score=234.06 Aligned_cols=302 Identities=15% Similarity=0.201 Sum_probs=197.0
Q ss_pred CCCccCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHH
Q psy15524 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKL 80 (930)
Q Consensus 1 ~g~~~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~ 80 (930)
+|+ .|+++|..+++.++.|+ ++.++||+|||++|.+|++..... |.+++||+||++||.|.++.+..+
T Consensus 108 lG~-rP~~VQ~~~ip~Ll~G~--Iaem~TGeGKTLa~~LP~~l~aL~---------g~~v~VvTpTreLA~Qdae~m~~l 175 (922)
T 1nkt_A 108 LDQ-RPFDVQVMGAAALHLGN--VAEMKTGEGKTLTCVLPAYLNALA---------GNGVHIVTVNDYLAKRDSEWMGRV 175 (922)
T ss_dssp HSC-CCCHHHHHHHHHHHTTE--EEECCTTSCHHHHTHHHHHHHHTT---------TSCEEEEESSHHHHHHHHHHHHHH
T ss_pred cCC-CCCHHHHHHHHhHhcCC--EEEecCCCccHHHHHHHHHHHHHh---------CCCeEEEeCCHHHHHHHHHHHHHH
Confidence 477 79999999999999997 999999999999999999754432 345999999999999999999999
Q ss_pred hhhcCCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHH-HHHHhcC-----CCccCCCccEEEEccccccc-cc-----
Q psy15524 81 CKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRL-LDHCKHT-----ETLKFSKVEHLVLDEADRIL-DQ----- 148 (930)
Q Consensus 81 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l-~~~l~~~-----~~~~l~~l~~vViDE~h~~~-~~----- 148 (930)
+..++ +.+++++||.+.... ....++||+||||++| .+++... ..+.++.+.++||||||.|+ |.
T Consensus 176 ~~~lG-Lsv~~i~gg~~~~~r--~~~y~~DIvygTpgrlgfDyLrD~m~~~~~~l~lr~l~~lIVDEaDsmLiDeartPL 252 (922)
T 1nkt_A 176 HRFLG-LQVGVILATMTPDER--RVAYNADITYGTNNEFGFDYLRDNMAHSLDDLVQRGHHYAIVDEVDSILIDEARTPL 252 (922)
T ss_dssp HHHTT-CCEEECCTTCCHHHH--HHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEETTHHHHHTTGGGSCE
T ss_pred HhhcC-CeEEEEeCCCCHHHH--HHhcCCCEEEECchHhhHHHHHhhhhccHhhhccCCCCEEEEeChHHHHHhcCccce
Confidence 98876 888889998765433 3334689999999999 6666542 24567899999999999998 43
Q ss_pred ----------CcHHHHHHHHHHHhhc------CCCceEE-----------------EEEeecCCCcccccc---cccccc
Q psy15524 149 ----------GYERDIAEFLEILKKQ------KPQFQSI-----------------LLSATLTPATCWCKH---TETLKF 192 (930)
Q Consensus 149 ----------~~~~~~~~i~~~l~~~------~~~~~~i-----------------~lSAT~~~~~~~~~~---~~~~~~ 192 (930)
+|...+..++..++.. ..+.|++ ++|||.+....+... ...+..
T Consensus 253 iiSg~~~~~~~~y~~i~~iv~~L~~~~dy~vDek~rqv~Lte~G~~~~e~~l~i~~Lfsat~~~l~~~i~~aL~A~~l~~ 332 (922)
T 1nkt_A 253 IISGPADGASNWYTEFARLAPLMEKDVHYEVDLRKRTVGVHEKGVEFVEDQLGIDNLYEAANSPLVSYLNNALKAKELFS 332 (922)
T ss_dssp EEEEECCCCHHHHHHHHHHHHHSCBTTTEEEETTTTEEEECHHHHHHHHHHHTCSSTTCSTTCCHHHHHHHHHHHHHHCC
T ss_pred eecCCCCcchhHHHHHHHHHHhCcccccceeccCcceEEecHhHHHHHHHHhCCccccCCcchhHHHHHHHHHHHHHHhh
Confidence 4778888888888621 1345777 788887542111100 000000
Q ss_pred ccccch-------hhhhh-hhhh-hccchhhHHHHHHHHhhc------------------CcCceEEEEecccchHHHHh
Q psy15524 193 SKVEHL-------VLDEA-DRIL-DQGYERDIAEFLEILKKQ------------------KPQFQSVLLSATLTPAVQRL 245 (930)
Q Consensus 193 ~~~~~~-------~~de~-~~~~-~~~~~~~~~~~~~~~~~~------------------~~~~q~~~~sat~~~~~~~l 245 (930)
.++.++ ++||. .+++ +..+.+.+...++.-... .-......++.|.......+
T Consensus 333 ~d~dYiV~dg~vviVDe~TGR~m~grr~sdGLHQaieaKe~V~I~~e~~TlatIt~Qnyfr~Y~kL~GMTGTa~te~~Ef 412 (922)
T 1nkt_A 333 RDKDYIVRDGEVLIVDEFTGRVLIGRRYNEGMHQAIEAKEHVEIKAENQTLATITLQNYFRLYDKLAGMTGTAQTEAAEL 412 (922)
T ss_dssp BTTTEEECSSCEEEBCSSSCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEECHHHHHTTSSEEEEEESCCGGGHHHH
T ss_pred cccceeeecCceEEEecccCcccCCccccchhhHHHhccccccccccccccceeehHHHHHhhhhhhccccCchhHHHHH
Confidence 111111 12221 1111 111222222222110000 00115666778887777677
Q ss_pred hhccccCCeeeccCCcccccCCCcccccCCCc-eeEEEEcCcchhHHHHHHHHhhhccccccCCcceEEEEEecccchhh
Q psy15524 246 AGMTLQNPIQIDAADSTDIHNTTDSLVIPDSL-KQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADY 324 (930)
Q Consensus 246 ~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~i-~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~iVF~~s~~~~~~ 324 (930)
...|--+. +.+..... .... ...++.+....|..++...+.. ....+.|+||||+|+..++.
T Consensus 413 ~~iY~l~v--v~IPtn~p----------~~R~d~~d~v~~t~~~K~~al~~~i~~-----~~~~gqpvLVft~Sie~sE~ 475 (922)
T 1nkt_A 413 HEIYKLGV--VSIPTNMP----------MIREDQSDLIYKTEEAKYIAVVDDVAE-----RYAKGQPVLIGTTSVERSEY 475 (922)
T ss_dssp HHHHCCEE--EECCCSSC----------CCCEECCCEEESCHHHHHHHHHHHHHH-----HHHTTCCEEEEESCHHHHHH
T ss_pred HHHhCCCe--EEeCCCCC----------cccccCCcEEEeCHHHHHHHHHHHHHH-----HHhcCCcEEEEECCHHHHHH
Confidence 66663322 22222110 0111 1234556678899999888843 12356799999999999999
Q ss_pred hHHHHhhhhh
Q psy15524 325 HTELLSTKKK 334 (930)
Q Consensus 325 l~~~L~~~~~ 334 (930)
++..|+..|-
T Consensus 476 Ls~~L~~~Gi 485 (922)
T 1nkt_A 476 LSRQFTKRRI 485 (922)
T ss_dssp HHHHHHHTTC
T ss_pred HHHHHHHCCC
Confidence 9999998764
|
| >4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.4e-21 Score=241.70 Aligned_cols=173 Identities=17% Similarity=0.206 Sum_probs=132.3
Q ss_pred CCccCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHHh
Q psy15524 2 NITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLC 81 (930)
Q Consensus 2 g~~~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~ 81 (930)
|+.+|+|+|.++++.++.|+|+++++|||+|||++|++|++..+.... ...+.++|||+|+++|+.|+++++++++
T Consensus 245 ~~~~~r~~Q~~ai~~il~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~----~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~ 320 (936)
T 4a2w_A 245 ETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMP----AGRKAKVVFLATKVPVYEQQKNVFKHHF 320 (936)
T ss_dssp ---CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHTTTTTCC----SSCCCCEEEECSSHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHHHHHhcc----ccCCCeEEEEeCCHHHHHHHHHHHHHHh
Confidence 577899999999999999999999999999999999999998775421 1225679999999999999999999998
Q ss_pred hhcCCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCc-HHHHHHHHHH
Q psy15524 82 KSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGY-ERDIAEFLEI 160 (930)
Q Consensus 82 ~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~-~~~~~~i~~~ 160 (930)
...+ +.+..++|+.....+...+..+++|+|+||++|.+.+.......+.++++|||||||++...+. ...+..++..
T Consensus 321 ~~~~-~~v~~~~G~~~~~~~~~~~~~~~~IvI~Tp~~L~~~l~~~~~~~l~~~~liViDEaH~~~~~~~~~~i~~~~~~~ 399 (936)
T 4a2w_A 321 ERQG-YSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQ 399 (936)
T ss_dssp HTTT-CCEEEECCC-----CCHHHHHHCSEEEECHHHHHHHHHSSSCCCGGGCSEEEEETGGGCSTTCHHHHHHHHHHHH
T ss_pred cccC-ceEEEEECCcchhhHHHHhccCCCEEEecHHHHHHHHHcCccccccCCCEEEEECccccCCCccHHHHHHHHHHH
Confidence 7554 7788888888666555555567899999999999998864443688999999999999987653 2222222222
Q ss_pred -HhhcCCCceEEEEEeecCC
Q psy15524 161 -LKKQKPQFQSILLSATLTP 179 (930)
Q Consensus 161 -l~~~~~~~~~i~lSAT~~~ 179 (930)
+....+.+++++||||+..
T Consensus 400 ~~~~~~~~~~~l~LSATp~~ 419 (936)
T 4a2w_A 400 KFNSASQLPQILGLTASVGV 419 (936)
T ss_dssp HHTTCSCCCEEEEEESCCCC
T ss_pred hhccCCCcCeEEEecCCccc
Confidence 2223567899999999964
|
| >3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.87 E-value=4.3e-22 Score=204.32 Aligned_cols=172 Identities=21% Similarity=0.253 Sum_probs=121.1
Q ss_pred cCCCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHH-HHHHHH
Q psy15524 409 GMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQ-TLEIFT 487 (930)
Q Consensus 409 ~~~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q-~~~~~~ 487 (930)
......|+++|.++++.+++++++++.+|||+|||++|++++++.+..... ...+.++||++|+++|+.| +.+.+.
T Consensus 28 ~~~~~~l~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~---~~~~~~~lil~p~~~L~~q~~~~~~~ 104 (216)
T 3b6e_A 28 PEPELQLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKK---ASEPGKVIVLVNKVLLVEQLFRKEFQ 104 (216)
T ss_dssp CSCCCCCCHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHH---TTCCCCEEEEESSHHHHHHHHHHTHH
T ss_pred ccCCCCchHHHHHHHHHHhcCCCEEEEcCCCCCHHHHHHHHHHHHHhhccc---ccCCCcEEEEECHHHHHHHHHHHHHH
Confidence 345568999999999999999999999999999999999999987765321 1246789999999999999 777888
Q ss_pred HhhccCCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhccCC-----cccccceEEEEecchhhhhcCcHHH
Q psy15524 488 KLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTET-----LKFSKVEHLVLDEADRILDQGYERD 562 (930)
Q Consensus 488 ~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~-----~~~~~l~~lVlDEah~l~~~g~~~~ 562 (930)
++... ...+..+.|+.........+..+++|+|+||+++...+..... ..+.++++||+||||++.+.++...
T Consensus 105 ~~~~~--~~~v~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~~~ 182 (216)
T 3b6e_A 105 PFLKK--WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNN 182 (216)
T ss_dssp HHHTT--TSCEEECCC---CCCCHHHHHHHCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEETTC-------CHHH
T ss_pred HHhcc--CceEEEEeCCcccchhHHhhccCCCEEEECHHHHHHHHhccCcccccccchhcccEEEEECchhhccCCcHHH
Confidence 77653 3345566676654444444455799999999999988876432 5578899999999999988765544
Q ss_pred H-HHHHHHH-hhc---------CccceEEEEccc
Q psy15524 563 I-AEFLEIL-KKQ---------KPQFQSILLSAT 585 (930)
Q Consensus 563 l-~~i~~~l-~~~---------~~~~q~vl~SAT 585 (930)
+ ..++... ... .+..+++++|||
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lSAT 216 (216)
T 3b6e_A 183 IMRHYLMQKLKNNRLKKENKPVIPLPQILGLTAS 216 (216)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCCCCCEEEEEECC
T ss_pred HHHHHHHHhcccccccccccCCCCcceEEEeecC
Confidence 3 3332221 111 146899999998
|
| >2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.5e-23 Score=205.64 Aligned_cols=144 Identities=27% Similarity=0.484 Sum_probs=129.3
Q ss_pred CceEEEEEcCc-hhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHHHHHHH
Q psy15524 624 SLKQHFIVTPP-KLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEV 702 (930)
Q Consensus 624 ~~~~~~~~~~~-~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~v 702 (930)
.+.+.|..++. ..|...+..++... .+.++||||++++.++.+++.|... ++.+..+||+|++.+|..+
T Consensus 3 ~i~~~~~~~~~~~~k~~~l~~ll~~~-------~~~~~iVF~~~~~~~~~l~~~L~~~---~~~~~~~~g~~~~~~r~~~ 72 (170)
T 2yjt_D 3 KIHQWYYRADDLEHKTALLVHLLKQP-------EATRSIVFVRKRERVHELANWLREA---GINNCYLEGEMVQGKRNEA 72 (170)
Confidence 45677777777 77888777776532 2579999999999999999999875 7788899999999999999
Q ss_pred HHHhhcCCCcEEEeccccccccCCCCccEEEEecCCCChhhHHhhhcccccCCCCceEEEEeCcccHHHHHHHHh
Q psy15524 703 FKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPSEVKLVEELQN 777 (930)
Q Consensus 703 ~~~F~~~~~~vLv~T~~~~~GlDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~e~~~~~~l~~ 777 (930)
++.|++|+.+|||||+++++|+|+|++++||++|+|.++.+|+||+||+||.|+.|.+++|+.+.+..+++.+.+
T Consensus 73 ~~~f~~g~~~vLvaT~~~~~Gid~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~ 147 (170)
T 2yjt_D 73 IKRLTEGRVNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVGR 147 (170)
Confidence 999999999999999999999999999999999999999999999999999999999999999998888877765
|
| >3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.3e-21 Score=200.65 Aligned_cols=168 Identities=22% Similarity=0.286 Sum_probs=119.1
Q ss_pred ccCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHH-HHHHHHHHhh
Q psy15524 4 TQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQ-TLEIFTKLCK 82 (930)
Q Consensus 4 ~~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q-~~~~~~~~~~ 82 (930)
..|+++|+++++.++.++++++++|||+|||++|+++++..+...... ..+.++||++|+++|+.| +.+.+.++..
T Consensus 32 ~~l~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~---~~~~~~lil~p~~~L~~q~~~~~~~~~~~ 108 (216)
T 3b6e_A 32 LQLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKKA---SEPGKVIVLVNKVLLVEQLFRKEFQPFLK 108 (216)
T ss_dssp CCCCHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHHT---TCCCCEEEEESSHHHHHHHHHHTHHHHHT
T ss_pred CCchHHHHHHHHHHhcCCCEEEEcCCCCCHHHHHHHHHHHHHhhcccc---cCCCcEEEEECHHHHHHHHHHHHHHHHhc
Confidence 479999999999999999999999999999999999999887653211 235679999999999999 6777888765
Q ss_pred hcCCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcCCC-----ccCCCccEEEEcccccccccCcHHHH-HH
Q psy15524 83 SFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTET-----LKFSKVEHLVLDEADRILDQGYERDI-AE 156 (930)
Q Consensus 83 ~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~-----~~l~~l~~vViDE~h~~~~~~~~~~~-~~ 156 (930)
. ...+..+.|+.........+..+++|+|+||+++...+..... ..+.++++|||||||++.+.++...+ ..
T Consensus 109 ~--~~~v~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~~~~~~~ 186 (216)
T 3b6e_A 109 K--WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMRH 186 (216)
T ss_dssp T--TSCEEECCC---CCCCHHHHHHHCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEETTC-------CHHHHHHH
T ss_pred c--CceEEEEeCCcccchhHHhhccCCCEEEECHHHHHHHHhccCcccccccchhcccEEEEECchhhccCCcHHHHHHH
Confidence 3 3566667777655544444445689999999999988876322 55788999999999999877655443 23
Q ss_pred HHH-HHhhc---------CCCceEEEEEee
Q psy15524 157 FLE-ILKKQ---------KPQFQSILLSAT 176 (930)
Q Consensus 157 i~~-~l~~~---------~~~~~~i~lSAT 176 (930)
++. .++.. .+.+++++||||
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~l~lSAT 216 (216)
T 3b6e_A 187 YLMQKLKNNRLKKENKPVIPLPQILGLTAS 216 (216)
T ss_dssp HHHHHHHHHHHHHTTCCCCCCCEEEEEECC
T ss_pred HHHHhcccccccccccCCCCcceEEEeecC
Confidence 222 22221 267899999998
|
| >2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.1e-20 Score=220.03 Aligned_cols=115 Identities=15% Similarity=0.196 Sum_probs=71.8
Q ss_pred HHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHHHHHHHHHHhhcCCCcEEE--e
Q psy15524 639 VALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSVKSGVLI--C 716 (930)
Q Consensus 639 ~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~v~~~F~~~~~~vLv--~ 716 (930)
..+...+...+.. .+++++|||+|....+.+++.+.. ..++ .+|.. .+|..+++.|+++. .||+ |
T Consensus 370 ~~~~~~l~~~~~~----~~g~~lvff~S~~~~~~v~~~l~~-----~~~~-~q~~~--~~~~~~l~~f~~~~-~il~~V~ 436 (540)
T 2vl7_A 370 PIYSILLKRIYEN----SSKSVLVFFPSYEMLESVRIHLSG-----IPVI-EENKK--TRHEEVLELMKTGK-YLVMLVM 436 (540)
T ss_dssp HHHHHHHHHHHHT----CSSEEEEEESCHHHHHHHHTTCTT-----SCEE-ESTTT--CCHHHHHHHHHTSC-CEEEEEC
T ss_pred HHHHHHHHHHHHh----CCCCEEEEeCCHHHHHHHHHHhcc-----CceE-ecCCC--CcHHHHHHHHhcCC-eEEEEEe
Confidence 3444455444332 257999999999999988877753 3333 36654 46889999999864 6877 8
Q ss_pred ccccccccCCCC----ccEEEEecCCCCh------------------------------hhHHhhhcccccCCCCceEEE
Q psy15524 717 TDVAARGLDLPL----VDWIVQYTAPSSS------------------------------TDYVHRVGRTARVGHEGSSLL 762 (930)
Q Consensus 717 T~~~~~GlDip~----v~~VI~~~~p~s~------------------------------~~y~qr~GRagR~g~~g~~~~ 762 (930)
|+.+++|||+|+ +++||.+++|... ....|.+||.-|...+-.+++
T Consensus 437 ~~~~~EGiD~~~~~~~~~~Vii~~lPf~~~~d~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Q~~GR~iR~~~D~g~v~ 516 (540)
T 2vl7_A 437 RAKESEGVEFREKENLFESLVLAGLPYPNVSDDMVRKRIERLSKLTGKDEDSIIHDLTAIVIKQTIGRAFRDPNDYVKIY 516 (540)
T ss_dssp ---------------CEEEEEEESCCCCCTTSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHCCSTTCCCEEE
T ss_pred cCceecceecCCCcccccEEEEECCCCCCCCCHHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHhCCcccCCCccEEEE
Confidence 999999999997 8999999988521 234589999999876655555
Q ss_pred EeCc
Q psy15524 763 FLIP 766 (930)
Q Consensus 763 ~~~~ 766 (930)
++.+
T Consensus 517 llD~ 520 (540)
T 2vl7_A 517 LCDS 520 (540)
T ss_dssp EESG
T ss_pred EEcc
Confidence 5544
|
| >4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.2e-21 Score=238.00 Aligned_cols=171 Identities=20% Similarity=0.283 Sum_probs=130.2
Q ss_pred cCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHH-HHHHHHHhhh
Q psy15524 5 QVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQT-LEIFTKLCKS 83 (930)
Q Consensus 5 ~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~-~~~~~~~~~~ 83 (930)
+|+|+|.++++.+++|+|+++++|||+|||++|++|++..+..... ...+.++|||+|+++|+.|+ .+++++++..
T Consensus 7 ~l~~~Q~~~i~~il~g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~---~~~~~~vlvl~P~~~L~~Q~~~~~l~~~~~~ 83 (699)
T 4gl2_A 7 QLRPYQMEVAQPALEGKNIIICLPTGCGKTRVAVYIAKDHLDKKKK---ASEPGKVIVLVNKVLLVEQLFRKEFQPFLKK 83 (699)
T ss_dssp CCCHHHHHHHHHHHSSCCEEECCCTTSCHHHHHHHHHHHHHHHHHH---HTCCCCBCCEESCSHHHHHHHHHTHHHHHTT
T ss_pred CccHHHHHHHHHHHhCCCEEEEcCCCCcHHHHHHHHHHHHHHhccc---cCCCCeEEEEECCHHHHHHHHHHHHHHHcCc
Confidence 6999999999999999999999999999999999999998876322 11235699999999999999 9999998864
Q ss_pred cCCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhc-----CCCccCCCccEEEEcccccccccC-cHHHHHHH
Q psy15524 84 FTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKH-----TETLKFSKVEHLVLDEADRILDQG-YERDIAEF 157 (930)
Q Consensus 84 ~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~-----~~~~~l~~l~~vViDE~h~~~~~~-~~~~~~~i 157 (930)
.+.+..++|+.........+...++|+|+||++|.+.+.+ ...+.+.++++|||||||++...+ +...+...
T Consensus 84 --~~~v~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvViDEaH~~~~~~~~~~i~~~~ 161 (699)
T 4gl2_A 84 --WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMRHY 161 (699)
T ss_dssp --TSCEEEEC----CCCCHHHHHHSCSEEEEEHHHHHHHTC--------CCCGGGCSEEEEESGGGCBTTBSSCSHHHHH
T ss_pred --CceEEEEeCCcchhhHHHhhhcCCCEEEECHHHHHHHHhccccccccceecccCcEEEEECccccCccchHHHHHHHH
Confidence 3677788888776655556667899999999999988742 244567899999999999986644 33333322
Q ss_pred HH-HHhhcC---------CCceEEEEEeecCCC
Q psy15524 158 LE-ILKKQK---------PQFQSILLSATLTPA 180 (930)
Q Consensus 158 ~~-~l~~~~---------~~~~~i~lSAT~~~~ 180 (930)
+. .++... +.+++++||||+...
T Consensus 162 l~~~~~~~~~~~~~~~~~~~~~il~lTATp~~~ 194 (699)
T 4gl2_A 162 LMQKLKNNRLKKENKPVIPLPQILGLTASPGVG 194 (699)
T ss_dssp HHHHHHHHHHHC----CCCCCEEEEECSCCCCC
T ss_pred HHhhhcccccccccccCCCCCEEEEeccccccc
Confidence 22 222222 678999999999864
|
| >3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.84 E-value=9.5e-21 Score=196.48 Aligned_cols=170 Identities=19% Similarity=0.248 Sum_probs=125.5
Q ss_pred CCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHHHHhhcc
Q psy15524 413 TQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKS 492 (930)
Q Consensus 413 ~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~ 492 (930)
-.++++|.++++.+..|+++++.||||||||+++.+++++.+.... ...+.++++++|+++|+.|+++.+......
T Consensus 60 ~p~~~~q~~~i~~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~----~~~~~~~l~~~p~~~la~q~~~~~~~~~~~ 135 (235)
T 3llm_A 60 LPVKKFESEILEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQND----RAAECNIVVTQPRRISAVSVAERVAFERGE 135 (235)
T ss_dssp SGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTT----CGGGCEEEEEESSHHHHHHHHHHHHHTTTC
T ss_pred CChHHHHHHHHHHHhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcC----CCCceEEEEeccchHHHHHHHHHHHHHhcc
Confidence 3578999999999999999999999999999999999988776522 123568999999999999999988776543
Q ss_pred CCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhccCCcccccceEEEEecchhh-hhcCcH-HHHHHHHHHH
Q psy15524 493 FTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRI-LDQGYE-RDIAEFLEIL 570 (930)
Q Consensus 493 ~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~l-~~~g~~-~~l~~i~~~l 570 (930)
......+.-....... ...+++|+|+|||++.+++.. .++++++||+||||++ ++++|. ..+..++...
T Consensus 136 ~~~~~~g~~~~~~~~~-----~~~~~~Ivv~Tpg~l~~~l~~----~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~ 206 (235)
T 3llm_A 136 EPGKSCGYSVRFESIL-----PRPHASIMFCTVGVLLRKLEA----GIRGISHVIVDEIHERDINTDFLLVVLRDVVQAY 206 (235)
T ss_dssp CTTSSEEEEETTEEEC-----CCSSSEEEEEEHHHHHHHHHH----CCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHC
T ss_pred ccCceEEEeechhhcc-----CCCCCeEEEECHHHHHHHHHh----hhcCCcEEEEECCccCCcchHHHHHHHHHHHhhC
Confidence 2222233222221110 113578999999999999875 3789999999999985 666665 3444444332
Q ss_pred hhcCccceEEEEccccCHHHHHHHhhhcCCC
Q psy15524 571 KKQKPQFQSILLSATLTPAVQRLAGMTLQNP 601 (930)
Q Consensus 571 ~~~~~~~q~vl~SAT~~~~~~~l~~~~~~~~ 601 (930)
++.|+++||||++... +.+.+...|
T Consensus 207 ----~~~~~il~SAT~~~~~--~~~~~~~~p 231 (235)
T 3llm_A 207 ----PEVRIVLMSATIDTSM--FCEYFFNCP 231 (235)
T ss_dssp ----TTSEEEEEECSSCCHH--HHHHTTSCC
T ss_pred ----CCCeEEEEecCCCHHH--HHHHcCCCC
Confidence 4789999999999765 555444444
|
| >1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=99.84 E-value=8.6e-21 Score=226.53 Aligned_cols=154 Identities=22% Similarity=0.376 Sum_probs=120.8
Q ss_pred CCCccCcHHHHHHHHHhhcC------CcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHH
Q psy15524 1 MNITQVTTVQQLSIQPILDG------GDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTL 74 (930)
Q Consensus 1 ~g~~~l~~~Q~~ai~~~~~g------~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~ 74 (930)
+|| +||++|+++++.++++ +|+++++|||||||++|++|++..+.. +.+++|++||++|+.|++
T Consensus 365 lpf-~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~~---------g~qvlvlaPtr~La~Q~~ 434 (780)
T 1gm5_A 365 LPF-KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEA---------GFQTAFMVPTSILAIQHY 434 (780)
T ss_dssp SSS-CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHH---------TSCEEEECSCHHHHHHHH
T ss_pred CCC-CCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHc---------CCeEEEEeCcHHHHHHHH
Confidence 578 7999999999998875 599999999999999999999998864 567999999999999999
Q ss_pred HHHHHHhhhcCCceeEEeeCCCchHHHH---HHhcC-CCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCc
Q psy15524 75 EIFTKLCKSFTWIVPSWLTGGEKMKSEK---ARIRK-GISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGY 150 (930)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~l~~-~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~ 150 (930)
+.+.+++...+ +.+..++|+....... ..+.. .++|+|+||+.+.+ .+.+.++++|||||+|++.....
T Consensus 435 ~~l~~~~~~~g-i~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~------~~~~~~l~lVVIDEaHr~g~~qr 507 (780)
T 1gm5_A 435 RRTVESFSKFN-IHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQE------DVHFKNLGLVIIDEQHRFGVKQR 507 (780)
T ss_dssp HHHHHHHTCSS-CCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHH------CCCCSCCCEEEEESCCCC-----
T ss_pred HHHHHHhhhcC-ceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhh------hhhccCCceEEecccchhhHHHH
Confidence 99999987655 6788888887655432 33334 59999999988754 24578999999999999732211
Q ss_pred HHHHHHHHHHHhhcCCCceEEEEEeecCC
Q psy15524 151 ERDIAEFLEILKKQKPQFQSILLSATLTP 179 (930)
Q Consensus 151 ~~~~~~i~~~l~~~~~~~~~i~lSAT~~~ 179 (930)
..+.....++++++||||+.+
T Consensus 508 --------~~l~~~~~~~~vL~mSATp~p 528 (780)
T 1gm5_A 508 --------EALMNKGKMVDTLVMSATPIP 528 (780)
T ss_dssp --------CCCCSSSSCCCEEEEESSCCC
T ss_pred --------HHHHHhCCCCCEEEEeCCCCH
Confidence 112233356788888888865
|
| >1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=99.83 E-value=2.7e-19 Score=207.75 Aligned_cols=160 Identities=23% Similarity=0.213 Sum_probs=127.4
Q ss_pred cCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHHhhhc
Q psy15524 5 QVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSF 84 (930)
Q Consensus 5 ~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~ 84 (930)
+|+|+|.++++.++.+ ++++++|||+|||++++++++..+.. .+.++||++|+++|+.|+.+++.+++..
T Consensus 9 ~l~~~Q~~~i~~~~~~-~~ll~~~tG~GKT~~~~~~~~~~~~~--------~~~~~liv~P~~~L~~q~~~~~~~~~~~- 78 (494)
T 1wp9_A 9 QPRIYQEVIYAKCKET-NCLIVLPTGLGKTLIAMMIAEYRLTK--------YGGKVLMLAPTKPLVLQHAESFRRLFNL- 78 (494)
T ss_dssp CCCHHHHHHHHHGGGS-CEEEECCTTSCHHHHHHHHHHHHHHH--------SCSCEEEECSSHHHHHHHHHHHHHHBCS-
T ss_pred CccHHHHHHHHHHhhC-CEEEEcCCCCCHHHHHHHHHHHHHhc--------CCCeEEEEECCHHHHHHHHHHHHHHhCc-
Confidence 6899999999999999 99999999999999999999888752 2456999999999999999999998632
Q ss_pred CCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCcHHHHHHHHHHHhhc
Q psy15524 85 TWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQ 164 (930)
Q Consensus 85 ~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~~~~~~~i~~~l~~~ 164 (930)
+...+..+.|+....... ....+++|+|+||+.+...+.. ..+.+.++++||+||||++.+...... +...+...
T Consensus 79 ~~~~v~~~~g~~~~~~~~-~~~~~~~ivv~T~~~l~~~~~~-~~~~~~~~~~vIiDEaH~~~~~~~~~~---~~~~~~~~ 153 (494)
T 1wp9_A 79 PPEKIVALTGEKSPEERS-KAWARAKVIVATPQTIENDLLA-GRISLEDVSLIVFDEAHRAVGNYAYVF---IAREYKRQ 153 (494)
T ss_dssp CGGGEEEECSCSCHHHHH-HHHHHCSEEEECHHHHHHHHHT-TSCCTTSCSEEEEETGGGCSTTCHHHH---HHHHHHHH
T ss_pred chhheEEeeCCcchhhhh-hhccCCCEEEecHHHHHHHHhc-CCcchhhceEEEEECCcccCCCCcHHH---HHHHHHhc
Confidence 234677777777655433 3334689999999999988775 556788999999999999986543332 33444444
Q ss_pred CCCceEEEEEeecCC
Q psy15524 165 KPQFQSILLSATLTP 179 (930)
Q Consensus 165 ~~~~~~i~lSAT~~~ 179 (930)
.+..++++|||||.+
T Consensus 154 ~~~~~~l~lTaTp~~ 168 (494)
T 1wp9_A 154 AKNPLVIGLTASPGS 168 (494)
T ss_dssp CSSCCEEEEESCSCS
T ss_pred CCCCeEEEEecCCCC
Confidence 567799999999973
|
| >3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1* | Back alignment and structure |
|---|
Probab=99.83 E-value=1e-18 Score=204.20 Aligned_cols=129 Identities=17% Similarity=0.101 Sum_probs=96.4
Q ss_pred CCCHHHHHhHHh----hhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHHHHh
Q psy15524 414 QVTTVQQLSIQP----ILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKL 489 (930)
Q Consensus 414 ~~~~iQ~~~i~~----il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~ 489 (930)
+++|.|.+.+.. +..|+|++++||||+|||++|++|++. . +.+++|++||++|+.|+.+++..+
T Consensus 3 ~~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~---~---------~~~v~i~~pt~~l~~q~~~~~~~l 70 (551)
T 3crv_A 3 KLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLE---V---------KPKVLFVVRTHNEFYPIYRDLTKI 70 (551)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHH---H---------CSEEEEEESSGGGHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHHh---C---------CCeEEEEcCCHHHHHHHHHHHHHH
Confidence 689999987764 457899999999999999999999996 1 568999999999999999999887
Q ss_pred hccCCCcceEEEeCCCch---------------------------------HHHH------------------HHHhcCC
Q psy15524 490 CKSFTWIVPSWLTGGEKM---------------------------------KSEK------------------ARIRKGI 518 (930)
Q Consensus 490 ~~~~~~~~~~~~~gg~~~---------------------------------~~~~------------------~~~~~~~ 518 (930)
....+ .....+.|+.+. .... +....++
T Consensus 71 ~~~~~-~~~~~l~gr~~~c~~~~~~~~~~~~~c~~c~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~Cpy~~ar~~~~~a 149 (551)
T 3crv_A 71 REKRN-ITFSFLVGKPSSCLYAEKGAESEDIPCKYCELKGSIVEVKTDDSPLSLVKKLKKDGLQDKFCPYYSLLNSLYKA 149 (551)
T ss_dssp CCSSC-CCEEECCCHHHHCTTBCTTCCGGGCCGGGCTTTTCCCCCCCCSCHHHHHHHHHHHHHHHTCCHHHHHHHHGGGC
T ss_pred hhhcC-ccEEEEccccccCcCchhcCCCcccccCCCCCccccccccccCCHHHHHHHHHHcCCcCCcCccHHHHhhhhcC
Confidence 65432 334445543211 0111 2234578
Q ss_pred cEEEECchhHHHhhhccCCccc-ccceEEEEecchhhhh
Q psy15524 519 SILVATPGRLLDHCKHTETLKF-SKVEHLVLDEADRILD 556 (930)
Q Consensus 519 ~Ilv~Tp~rl~~~l~~~~~~~~-~~l~~lVlDEah~l~~ 556 (930)
+|||+|++.|++...+.. +.+ ....++||||||.+.+
T Consensus 150 dIVV~~~~~l~~~~~~~~-~~~~~~~~~vIiDEAHnl~d 187 (551)
T 3crv_A 150 DVIALTYPYFFIDRYREF-IDIDLREYMIVIDEAHNLDK 187 (551)
T ss_dssp SEEEEETHHHHCHHHHTT-SCCCSTTEEEEETTGGGGGG
T ss_pred CEEEeCchHhcCHHHHHh-cCCCcCCeEEEEecccchHH
Confidence 999999999988754422 222 4678999999999876
|
| >2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1 | Back alignment and structure |
|---|
Probab=99.82 E-value=4.1e-19 Score=222.59 Aligned_cols=154 Identities=23% Similarity=0.281 Sum_probs=118.2
Q ss_pred CCCccCcHHHHHHHHHhhc----CC--cEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHH
Q psy15524 1 MNITQVTTVQQLSIQPILD----GG--DVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTL 74 (930)
Q Consensus 1 ~g~~~l~~~Q~~ai~~~~~----g~--~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~ 74 (930)
+||+ +||+|.+|++.+++ |+ |+++++|||+|||++|+++++..+.. +.+++|++||++|+.|++
T Consensus 600 f~~~-~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~~---------g~~vlvlvPt~~La~Q~~ 669 (1151)
T 2eyq_A 600 FPFE-TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDN---------HKQVAVLVPTTLLAQQHY 669 (1151)
T ss_dssp CCSC-CCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHTT---------TCEEEEECSSHHHHHHHH
T ss_pred CCCC-CCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHHh---------CCeEEEEechHHHHHHHH
Confidence 4775 79999999999886 66 99999999999999999998876532 568999999999999999
Q ss_pred HHHHHHhhhcCCceeEEeeCCCchHHHH---HHhcC-CCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCc
Q psy15524 75 EIFTKLCKSFTWIVPSWLTGGEKMKSEK---ARIRK-GISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGY 150 (930)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~l~~-~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~ 150 (930)
+.+.+.+...+ +.+..+++........ ..+.. .++|+|+||+.+. ..+.+.++++|||||+|++.
T Consensus 670 ~~~~~~~~~~~-i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~------~~~~~~~l~lvIiDEaH~~g---- 738 (1151)
T 2eyq_A 670 DNFRDRFANWP-VRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQ------SDVKFKDLGLLIVDEEHRFG---- 738 (1151)
T ss_dssp HHHHHHSTTTT-CCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHH------SCCCCSSEEEEEEESGGGSC----
T ss_pred HHHHHHhhcCC-CeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHh------CCccccccceEEEechHhcC----
Confidence 99999877554 5666677665544332 33434 5999999997663 23557899999999999952
Q ss_pred HHHHHHHHHHHhhcCCCceEEEEEeecCC
Q psy15524 151 ERDIAEFLEILKKQKPQFQSILLSATLTP 179 (930)
Q Consensus 151 ~~~~~~i~~~l~~~~~~~~~i~lSAT~~~ 179 (930)
.....++..++ .++++++||||+.+
T Consensus 739 -~~~~~~l~~l~---~~~~vl~lSATp~p 763 (1151)
T 2eyq_A 739 -VRHKERIKAMR---ANVDILTLTATPIP 763 (1151)
T ss_dssp -HHHHHHHHHHH---TTSEEEEEESSCCC
T ss_pred -hHHHHHHHHhc---CCCCEEEEcCCCCh
Confidence 23333444333 45689999999865
|
| >2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A | Back alignment and structure |
|---|
Probab=99.79 E-value=4.6e-20 Score=210.25 Aligned_cols=152 Identities=15% Similarity=0.104 Sum_probs=110.7
Q ss_pred CCccCcHHHHHHHHHhhcCCcE-EEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHH
Q psy15524 2 NITQVTTVQQLSIQPILDGGDV-LVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKL 80 (930)
Q Consensus 2 g~~~l~~~Q~~ai~~~~~g~~~-lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~ 80 (930)
|+.+++|+|+ ++|.+++|+++ ++++|||||||++|++|++..+.. .+.++||++||++|+.|+++.+...
T Consensus 1 G~~q~~~iq~-~i~~~l~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~--------~~~~~lvl~Ptr~La~Q~~~~l~g~ 71 (451)
T 2jlq_A 1 GSAMGEPDYE-VDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALL--------RRLRTLILAPTRVVAAEMEEALRGL 71 (451)
T ss_dssp CCCCCSCCCC-CCGGGGSTTCEEEECCCTTSSCCTTHHHHHHHHHHH--------TTCCEEEEESSHHHHHHHHHHTTTS
T ss_pred CCCCCCCcHH-HHHHHHhcCCeEEEECCCCCCHhhHHHHHHHHHHHh--------cCCcEEEECCCHHHHHHHHHHhcCc
Confidence 8899999986 79999999887 999999999999999999987754 2467999999999999999987422
Q ss_pred hhhcCCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCcHHHHHHHHHH
Q psy15524 81 CKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEI 160 (930)
Q Consensus 81 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~~~~~~~i~~~ 160 (930)
.+....+.... ....+..|.++|++.+...+.+. ..+.++++|||||||++ +..+......+...
T Consensus 72 -------~v~~~~~~~~~-----~~~~~~~i~~~t~~~l~~~l~~~--~~l~~~~~iViDEah~~-~~~~~~~~~~~~~~ 136 (451)
T 2jlq_A 72 -------PIRYQTPAVKS-----DHTGREIVDLMCHATFTTRLLSS--TRVPNYNLIVMDEAHFT-DPCSVAARGYISTR 136 (451)
T ss_dssp -------CEEECCTTCSC-----CCCSSCCEEEEEHHHHHHHHHHC--SCCCCCSEEEEETTTCC-SHHHHHHHHHHHHH
T ss_pred -------eeeeeeccccc-----cCCCCceEEEEChHHHHHHhhCc--ccccCCCEEEEeCCccC-CcchHHHHHHHHHh
Confidence 22211111110 11234579999999998877642 45789999999999987 44443333333221
Q ss_pred HhhcCCCceEEEEEeecCC
Q psy15524 161 LKKQKPQFQSILLSATLTP 179 (930)
Q Consensus 161 l~~~~~~~~~i~lSAT~~~ 179 (930)
...+++|+++||||+++
T Consensus 137 --~~~~~~~~i~~SAT~~~ 153 (451)
T 2jlq_A 137 --VEMGEAAAIFMTATPPG 153 (451)
T ss_dssp --HHTTSCEEEEECSSCTT
T ss_pred --hcCCCceEEEEccCCCc
Confidence 23456789999999865
|
| >1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23 | Back alignment and structure |
|---|
Probab=99.79 E-value=1.2e-19 Score=194.09 Aligned_cols=153 Identities=18% Similarity=0.160 Sum_probs=117.7
Q ss_pred CCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHHHHhhccC
Q psy15524 414 QVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSF 493 (930)
Q Consensus 414 ~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~ 493 (930)
.++++|.++++.++.+++.++++|||+|||+++++++...+.. .+.++||++||++|+.|+.+.+.+++..
T Consensus 113 ~l~~~Q~~ai~~~l~~~~~ll~~~tGsGKT~~~~~~~~~~~~~--------~~~~~lil~Pt~~L~~q~~~~l~~~~~~- 183 (282)
T 1rif_A 113 EPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLEN--------YEGKILIIVPTTALTTQMADDFVDYRLF- 183 (282)
T ss_dssp CCCHHHHHHHHHHHHHSEEEECCCTTSCHHHHHHHHHHHHHHH--------CSSEEEEECSSHHHHHHHHHHHHHHTSC-
T ss_pred CccHHHHHHHHHHHhcCCeEEEcCCCCCcHHHHHHHHHHHHHc--------CCCeEEEEECCHHHHHHHHHHHHHhccc-
Confidence 7999999999999998889999999999999998888876653 2347999999999999999999988643
Q ss_pred CCcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhccCCcccccceEEEEecchhhhhcCcHHHHHHHHHHHhhc
Q psy15524 494 TWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQ 573 (930)
Q Consensus 494 ~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~l~~~g~~~~l~~i~~~l~~~ 573 (930)
.......+.||..... ....+.+|+|+||+++.... ...+.+++++|+||||++.+. .+..++..+
T Consensus 184 ~~~~~~~~~~~~~~~~---~~~~~~~I~v~T~~~l~~~~----~~~~~~~~~vIiDEaH~~~~~----~~~~il~~~--- 249 (282)
T 1rif_A 184 SHAMIKKIGGGASKDD---KYKNDAPVVVGTWQTVVKQP----KEWFSQFGMMMNDECHLATGK----SISSIISGL--- 249 (282)
T ss_dssp CGGGEEECSTTCSSTT---CCCTTCSEEEECHHHHTTSC----GGGGGGEEEEEEETGGGCCHH----HHHHHTTTC---
T ss_pred ccceEEEEeCCCcchh---hhccCCcEEEEchHHHHhhH----HHHHhhCCEEEEECCccCCcc----cHHHHHHHh---
Confidence 2334566667654322 12246899999999875432 234678999999999999743 444444433
Q ss_pred CccceEEEEccccCHH
Q psy15524 574 KPQFQSILLSATLTPA 589 (930)
Q Consensus 574 ~~~~q~vl~SAT~~~~ 589 (930)
....+++++|||+++.
T Consensus 250 ~~~~~~l~lSATp~~~ 265 (282)
T 1rif_A 250 NNCMFKFGLSGSLRDG 265 (282)
T ss_dssp TTCCEEEEECSSCCTT
T ss_pred hcCCeEEEEeCCCCCc
Confidence 3478999999999865
|
| >2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4} | Back alignment and structure |
|---|
Probab=99.78 E-value=7e-19 Score=205.19 Aligned_cols=152 Identities=17% Similarity=0.160 Sum_probs=119.5
Q ss_pred cCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHHhhhc
Q psy15524 5 QVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSF 84 (930)
Q Consensus 5 ~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~ 84 (930)
+|+|+|.+|++.+++++++++++|||+|||++|++++...+.. ...++|||+|+++|+.|++++++++...
T Consensus 113 ~l~~~Q~~ai~~~~~~~~~ll~~~tGsGKT~~~~~~~~~~~~~--------~~~~vlvl~P~~~L~~Q~~~~~~~~~~~- 183 (510)
T 2oca_A 113 EPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLEN--------YEGKILIIVPTTALTTQMADDFVDYRLF- 183 (510)
T ss_dssp CCCHHHHHHHHHHHHHSEEEEECCSTTTHHHHHHHHHHHHHHH--------CSSEEEEEESSHHHHHHHHHHHHHTTSS-
T ss_pred CCCHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHHhC--------CCCeEEEEECcHHHHHHHHHHHHHhhcC-
Confidence 7999999999999999999999999999999999999887754 1237999999999999999999887442
Q ss_pred CCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCcHHHHHHHHHHHhhc
Q psy15524 85 TWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQ 164 (930)
Q Consensus 85 ~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~~~~~~~i~~~l~~~ 164 (930)
+...+..+.|+.....+ +...++|+|+||+.+... ....+.++++|||||+|++.. ..+..++ ...
T Consensus 184 ~~~~v~~~~~~~~~~~~---~~~~~~I~i~T~~~l~~~----~~~~~~~~~liIiDE~H~~~~----~~~~~il---~~~ 249 (510)
T 2oca_A 184 SHAMIKKIGGGASKDDK---YKNDAPVVVGTWQTVVKQ----PKEWFSQFGMMMNDECHLATG----KSISSII---SGL 249 (510)
T ss_dssp CGGGEEECGGGCCTTGG---GCTTCSEEEEEHHHHTTS----CGGGGGGEEEEEEETGGGCCH----HHHHHHG---GGC
T ss_pred CccceEEEecCCccccc---cccCCcEEEEeHHHHhhc----hhhhhhcCCEEEEECCcCCCc----ccHHHHH---Hhc
Confidence 33566667777655443 456789999999976432 334567899999999999875 2333333 334
Q ss_pred CCCceEEEEEeecCC
Q psy15524 165 KPQFQSILLSATLTP 179 (930)
Q Consensus 165 ~~~~~~i~lSAT~~~ 179 (930)
.+..++++|||||++
T Consensus 250 ~~~~~~l~lSATp~~ 264 (510)
T 2oca_A 250 NNCMFKFGLSGSLRD 264 (510)
T ss_dssp TTCCEEEEEESCGGG
T ss_pred ccCcEEEEEEeCCCC
Confidence 456799999999964
|
| >1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23 | Back alignment and structure |
|---|
Probab=99.78 E-value=7e-19 Score=187.99 Aligned_cols=154 Identities=18% Similarity=0.159 Sum_probs=117.4
Q ss_pred cCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHHhhhc
Q psy15524 5 QVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSF 84 (930)
Q Consensus 5 ~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~ 84 (930)
+|+++|.++++.++++.+.++++|||+|||+++++++...+.. .+.++||++|+++|+.|+.+++++++...
T Consensus 113 ~l~~~Q~~ai~~~l~~~~~ll~~~tGsGKT~~~~~~~~~~~~~--------~~~~~lil~Pt~~L~~q~~~~l~~~~~~~ 184 (282)
T 1rif_A 113 EPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLEN--------YEGKILIIVPTTALTTQMADDFVDYRLFS 184 (282)
T ss_dssp CCCHHHHHHHHHHHHHSEEEECCCTTSCHHHHHHHHHHHHHHH--------CSSEEEEECSSHHHHHHHHHHHHHHTSCC
T ss_pred CccHHHHHHHHHHHhcCCeEEEcCCCCCcHHHHHHHHHHHHHc--------CCCeEEEEECCHHHHHHHHHHHHHhcccc
Confidence 6999999999999988899999999999999999888876653 12369999999999999999999886432
Q ss_pred CCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCcHHHHHHHHHHHhhc
Q psy15524 85 TWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQ 164 (930)
Q Consensus 85 ~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~~~~~~~i~~~l~~~ 164 (930)
...+..++++..... ......+|+|+||+.+... ....+.++++||+||||++.+ +.+..++..+
T Consensus 185 -~~~~~~~~~~~~~~~---~~~~~~~I~v~T~~~l~~~----~~~~~~~~~~vIiDEaH~~~~----~~~~~il~~~--- 249 (282)
T 1rif_A 185 -HAMIKKIGGGASKDD---KYKNDAPVVVGTWQTVVKQ----PKEWFSQFGMMMNDECHLATG----KSISSIISGL--- 249 (282)
T ss_dssp -GGGEEECSTTCSSTT---CCCTTCSEEEECHHHHTTS----CGGGGGGEEEEEEETGGGCCH----HHHHHHTTTC---
T ss_pred -cceEEEEeCCCcchh---hhccCCcEEEEchHHHHhh----HHHHHhhCCEEEEECCccCCc----ccHHHHHHHh---
Confidence 245566666654332 2235689999999987543 223467899999999999974 3444444433
Q ss_pred CCCceEEEEEeecCCCc
Q psy15524 165 KPQFQSILLSATLTPAT 181 (930)
Q Consensus 165 ~~~~~~i~lSAT~~~~~ 181 (930)
....++++||||+++..
T Consensus 250 ~~~~~~l~lSATp~~~~ 266 (282)
T 1rif_A 250 NNCMFKFGLSGSLRDGK 266 (282)
T ss_dssp TTCCEEEEECSSCCTTS
T ss_pred hcCCeEEEEeCCCCCcc
Confidence 34679999999997643
|
| >2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=7.4e-19 Score=202.85 Aligned_cols=138 Identities=20% Similarity=0.149 Sum_probs=111.8
Q ss_pred cCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHHhhhc
Q psy15524 5 QVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSF 84 (930)
Q Consensus 5 ~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~ 84 (930)
+|+|+|+++++.++.+.++++++|||+|||++|+.++... +.++|||+|+++|+.|+.++++++
T Consensus 93 ~l~~~Q~~ai~~i~~~~~~ll~~~TGsGKT~~~l~~i~~~------------~~~~Lvl~P~~~L~~Q~~~~~~~~---- 156 (472)
T 2fwr_A 93 SLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL------------STPTLIVVPTLALAEQWKERLGIF---- 156 (472)
T ss_dssp CBCHHHHHHHHHHTTTTEEEEECCTTSCHHHHHHHHHHHH------------CSCEEEEESSHHHHHHHHHHGGGG----
T ss_pred CcCHHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHc------------CCCEEEEECCHHHHHHHHHHHHhC----
Confidence 6999999999999999999999999999999999998754 235999999999999999999883
Q ss_pred CCce-eEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCcHHHHHHHHHHHhh
Q psy15524 85 TWIV-PSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKK 163 (930)
Q Consensus 85 ~~~~-~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~~~~~~~i~~~l~~ 163 (930)
+ .. +..+.|+.. ...+|+|+||+.+...+.. ...++++|||||+|++...+|.. ++..
T Consensus 157 ~-~~~v~~~~g~~~---------~~~~Ivv~T~~~l~~~~~~----~~~~~~liIvDEaH~~~~~~~~~----~~~~--- 215 (472)
T 2fwr_A 157 G-EEYVGEFSGRIK---------ELKPLTVSTYDSAYVNAEK----LGNRFMLLIFDEVHHLPAESYVQ----IAQM--- 215 (472)
T ss_dssp C-GGGEEEBSSSCB---------CCCSEEEEEHHHHHHTHHH----HTTTCSEEEEETGGGTTSTTTHH----HHHT---
T ss_pred C-CcceEEECCCcC---------CcCCEEEEEcHHHHHHHHH----hcCCCCEEEEECCcCCCChHHHH----HHHh---
Confidence 2 45 666776654 2478999999999776642 12469999999999999887754 2222
Q ss_pred cCCCceEEEEEeecCCC
Q psy15524 164 QKPQFQSILLSATLTPA 180 (930)
Q Consensus 164 ~~~~~~~i~lSAT~~~~ 180 (930)
.+..++++|||||.+.
T Consensus 216 -~~~~~~l~lSATp~~~ 231 (472)
T 2fwr_A 216 -SIAPFRLGLTATFERE 231 (472)
T ss_dssp -CCCSEEEEEESCCCCT
T ss_pred -cCCCeEEEEecCccCC
Confidence 2456899999999853
|
| >3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.7e-18 Score=179.50 Aligned_cols=160 Identities=19% Similarity=0.223 Sum_probs=117.6
Q ss_pred cCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHHhhhc
Q psy15524 5 QVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSF 84 (930)
Q Consensus 5 ~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~ 84 (930)
.++++|+++++.+..|++++++||||||||.++.++++..+..... ..+.++++++|+++|+.|+.+.+.......
T Consensus 61 p~~~~q~~~i~~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~----~~~~~~l~~~p~~~la~q~~~~~~~~~~~~ 136 (235)
T 3llm_A 61 PVKKFESEILEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDR----AAECNIVVTQPRRISAVSVAERVAFERGEE 136 (235)
T ss_dssp GGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTC----GGGCEEEEEESSHHHHHHHHHHHHHTTTCC
T ss_pred ChHHHHHHHHHHHhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCC----CCceEEEEeccchHHHHHHHHHHHHHhccc
Confidence 4689999999999999999999999999999999999887665322 124579999999999999999887665432
Q ss_pred CCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccc-cccCcH-HHHHHHHHHHh
Q psy15524 85 TWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRI-LDQGYE-RDIAEFLEILK 162 (930)
Q Consensus 85 ~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~-~~~~~~-~~~~~i~~~l~ 162 (930)
....++.-.... ......+++|+|+||+++++++.. .++++++|||||||.+ ++.++. ..+..+.
T Consensus 137 ~~~~~g~~~~~~-----~~~~~~~~~Ivv~Tpg~l~~~l~~----~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~---- 203 (235)
T 3llm_A 137 PGKSCGYSVRFE-----SILPRPHASIMFCTVGVLLRKLEA----GIRGISHVIVDEIHERDINTDFLLVVLRDVV---- 203 (235)
T ss_dssp TTSSEEEEETTE-----EECCCSSSEEEEEEHHHHHHHHHH----CCTTCCEEEECCTTSCCHHHHHHHHHHHHHH----
T ss_pred cCceEEEeechh-----hccCCCCCeEEEECHHHHHHHHHh----hhcCCcEEEEECCccCCcchHHHHHHHHHHH----
Confidence 112222111111 011124578999999999999875 3889999999999986 665554 2333333
Q ss_pred hcCCCceEEEEEeecCCCc
Q psy15524 163 KQKPQFQSILLSATLTPAT 181 (930)
Q Consensus 163 ~~~~~~~~i~lSAT~~~~~ 181 (930)
...++.|+++||||++...
T Consensus 204 ~~~~~~~~il~SAT~~~~~ 222 (235)
T 3llm_A 204 QAYPEVRIVLMSATIDTSM 222 (235)
T ss_dssp HHCTTSEEEEEECSSCCHH
T ss_pred hhCCCCeEEEEecCCCHHH
Confidence 3346789999999998643
|
| >2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A | Back alignment and structure |
|---|
Probab=99.76 E-value=2.2e-19 Score=210.64 Aligned_cols=153 Identities=14% Similarity=0.084 Sum_probs=114.9
Q ss_pred CccCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHHhh
Q psy15524 3 ITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCK 82 (930)
Q Consensus 3 ~~~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~ 82 (930)
...++|+|+.+++.+++|+|++++||||||||++|++|+++.+.. .+.++||++||++|+.|+++.+...
T Consensus 169 ~~~~lpiq~~~i~~l~~g~dvlv~a~TGSGKT~~~~lpil~~l~~--------~~~~vLvl~PtreLa~Qi~~~l~~~-- 238 (618)
T 2whx_A 169 ERIGEPDYEVDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALK--------RRLRTLILAPTRVVAAEMEEALRGL-- 238 (618)
T ss_dssp CCCCCCCCCCCGGGGSTTCEEEECCCTTSSTTTTHHHHHHHHHHH--------TTCCEEEEESSHHHHHHHHHHTTTS--
T ss_pred cccCCCccccCHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHHHHh--------CCCeEEEEcChHHHHHHHHHHhcCC--
Confidence 356789988899999999999999999999999999999998865 2456999999999999999887622
Q ss_pred hcCCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCcHHHHHHHHHHHh
Q psy15524 83 SFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILK 162 (930)
Q Consensus 83 ~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~~~~~~~i~~~l~ 162 (930)
.+. +.+..- . .....+..+.++|.+.+...+... ..+.++++|||||||++ +.++...+..+...++
T Consensus 239 -----~v~-~~~~~l-~---~~~tp~~~i~~~t~~~l~~~l~~~--~~l~~~~~iViDEah~~-~~~~~~~~~~i~~~l~ 305 (618)
T 2whx_A 239 -----PIR-YQTPAV-K---SDHTGREIVDLMCHATFTTRLLSS--TRVPNYNLIVMDEAHFT-DPCSVAARGYISTRVE 305 (618)
T ss_dssp -----CEE-ECCTTS-S---CCCCSSSCEEEEEHHHHHHHHHHC--SSCCCCSEEEEESTTCC-SHHHHHHHHHHHHHHH
T ss_pred -----cee-Eecccc-e---eccCCCceEEEEChHHHHHHHhcc--ccccCCeEEEEECCCCC-CccHHHHHHHHHHHhc
Confidence 222 111110 0 001123457788888887766542 34789999999999998 6678778877777764
Q ss_pred hcCCCceEEEEEeecCCC
Q psy15524 163 KQKPQFQSILLSATLTPA 180 (930)
Q Consensus 163 ~~~~~~~~i~lSAT~~~~ 180 (930)
. ++.|+++||||+++.
T Consensus 306 ~--~~~q~il~SAT~~~~ 321 (618)
T 2whx_A 306 M--GEAAAIFMTATPPGS 321 (618)
T ss_dssp H--TSCEEEEECSSCTTC
T ss_pred c--cCccEEEEECCCchh
Confidence 3 456888888888653
|
| >2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.74 E-value=7.2e-18 Score=195.18 Aligned_cols=131 Identities=18% Similarity=0.233 Sum_probs=110.1
Q ss_pred CCCccCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHH
Q psy15524 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKL 80 (930)
Q Consensus 1 ~g~~~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~ 80 (930)
+|+ .|+++|..+++.++.|+ ++.++||+|||++|.+|++..... |.+++|++||++||.|.++.+..+
T Consensus 76 lG~-~Pt~VQ~~~ip~LlqG~--IaeakTGeGKTLvf~Lp~~L~aL~---------G~qv~VvTPTreLA~Qdae~m~~l 143 (997)
T 2ipc_A 76 LGM-RHFDVQLIGGAVLHEGK--IAEMKTGEGKTLVATLAVALNALT---------GKGVHVVTVNDYLARRDAEWMGPV 143 (997)
T ss_dssp TCC-CCCHHHHHHHHHHHTTS--EEECCSTHHHHHHHHHHHHHHHTT---------CSCCEEEESSHHHHHHHHHHHHHH
T ss_pred hCC-CCcHHHHhhcccccCCc--eeeccCCCchHHHHHHHHHHHHHh---------CCCEEEEeCCHHHHHHHHHHHHHH
Confidence 588 89999999999999998 999999999999999999644432 446999999999999999999999
Q ss_pred hhhcCCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHH-HHHHhcC-----CCccCC---CccEEEEccccccc
Q psy15524 81 CKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRL-LDHCKHT-----ETLKFS---KVEHLVLDEADRIL 146 (930)
Q Consensus 81 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l-~~~l~~~-----~~~~l~---~l~~vViDE~h~~~ 146 (930)
+..++ +.+.+++||.+... .....++||+||||+++ .+++... ..+.++ ++.++||||+|.|+
T Consensus 144 ~~~lG-Lsv~~i~Gg~~~~~--r~~ay~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~lIIDEaDsmL 215 (997)
T 2ipc_A 144 YRGLG-LSVGVIQHASTPAE--RRKAYLADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYAIIDEVDSIL 215 (997)
T ss_dssp HHTTT-CCEEECCTTCCHHH--HHHHHTSSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCEEEETTHHHHT
T ss_pred HHhcC-CeEEEEeCCCCHHH--HHHHcCCCEEEECchhhhhHHHHHhhhcchhhcccccCCCcceEEEechHHHH
Confidence 98776 78888999877433 33344699999999999 7777653 134577 89999999999987
|
| >3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ... | Back alignment and structure |
|---|
Probab=99.74 E-value=1.1e-18 Score=202.38 Aligned_cols=143 Identities=19% Similarity=0.153 Sum_probs=107.8
Q ss_pred HHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHHhhhcCCc
Q psy15524 8 TVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWI 87 (930)
Q Consensus 8 ~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~ 87 (930)
+.|+++++.+..+++++++||||||||.+|.+|+++. +.++||++||++|+.|+++++.+... .
T Consensus 220 ~~q~~i~~~L~~~~~vlv~ApTGSGKT~a~~l~ll~~------------g~~vLVl~PTReLA~Qia~~l~~~~g----~ 283 (666)
T 3o8b_A 220 TDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAAQ------------GYKVLVLNPSVAATLGFGAYMSKAHG----I 283 (666)
T ss_dssp CCCCSCCCCCSSCEEEEEECCTTSCTTTHHHHHHHHT------------TCCEEEEESCHHHHHHHHHHHHHHHS----C
T ss_pred HHHHHHHHHHHcCCeEEEEeCCchhHHHHHHHHHHHC------------CCeEEEEcchHHHHHHHHHHHHHHhC----C
Confidence 3444445556678899999999999999999998751 44699999999999999998876653 3
Q ss_pred eeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCcHHHHHHHHHHHhhcCCC
Q psy15524 88 VPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQ 167 (930)
Q Consensus 88 ~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~~~~~~~i~~~l~~~~~~ 167 (930)
.+....|+.. ...+++|+|+||++|+ . ...+.++++++|||||||+ ++.+|...+..+++.++... .
T Consensus 284 ~vg~~vG~~~-------~~~~~~IlV~TPGrLl---~-~~~l~l~~l~~lVlDEAH~-l~~~~~~~l~~Il~~l~~~~-~ 350 (666)
T 3o8b_A 284 DPNIRTGVRT-------ITTGAPVTYSTYGKFL---A-DGGCSGGAYDIIICDECHS-TDSTTILGIGTVLDQAETAG-A 350 (666)
T ss_dssp CCEEECSSCE-------ECCCCSEEEEEHHHHH---H-TTSCCTTSCSEEEETTTTC-CSHHHHHHHHHHHHHTTTTT-C
T ss_pred CeeEEECcEe-------ccCCCCEEEECcHHHH---h-CCCcccCcccEEEEccchh-cCccHHHHHHHHHHhhhhcC-C
Confidence 3455556543 3567899999999984 2 2566788999999999965 56778788888887776443 2
Q ss_pred ceEEEEEeecCC
Q psy15524 168 FQSILLSATLTP 179 (930)
Q Consensus 168 ~~~i~lSAT~~~ 179 (930)
..++++|||+++
T Consensus 351 ~llil~SAT~~~ 362 (666)
T 3o8b_A 351 RLVVLATATPPG 362 (666)
T ss_dssp SEEEEEESSCTT
T ss_pred ceEEEECCCCCc
Confidence 236667888865
|
| >3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=99.72 E-value=4.7e-18 Score=201.58 Aligned_cols=157 Identities=17% Similarity=0.176 Sum_probs=90.1
Q ss_pred cCcHHHHHHHHHhhc----C-CcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHH-HHHH
Q psy15524 5 QVTTVQQLSIQPILD----G-GDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTL-EIFT 78 (930)
Q Consensus 5 ~l~~~Q~~ai~~~~~----g-~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~-~~~~ 78 (930)
.|+|+|.++++.+++ | +++++++|||+|||++++..+...+...-.......+.++|||+|+++|+.|+. +.++
T Consensus 178 ~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~~~~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~~~~~~ 257 (590)
T 3h1t_A 178 SPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQISWKLWSARWNRTGDYRKPRILFLADRNVLVDDPKDKTFT 257 (590)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHHHHTTCCSSCSSSCCCEEEEEC-----------CCT
T ss_pred CchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHHHHHHHHhcccccccccCCCeEEEEeCCHHHHHHHHHHHHH
Confidence 699999999999876 4 569999999999999966555444332111111124567999999999999999 6666
Q ss_pred HHhhhcCCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcC---CCccCCCccEEEEcccccccccCcHHHHH
Q psy15524 79 KLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHT---ETLKFSKVEHLVLDEADRILDQGYERDIA 155 (930)
Q Consensus 79 ~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~---~~~~l~~l~~vViDE~h~~~~~~~~~~~~ 155 (930)
.+.. ....+.++ ....+.+|+|+||+++....... ..+...++++|||||||++...+ ...+.
T Consensus 258 ~~~~-----~~~~~~~~--------~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH~~~~~~-~~~~~ 323 (590)
T 3h1t_A 258 PFGD-----ARHKIEGG--------KVVKSREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECHRGSARD-NSNWR 323 (590)
T ss_dssp TTCS-----SEEECCC----------CCSSCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCCC----------CH
T ss_pred hcch-----hhhhhhcc--------CCCCCCcEEEEEhhhhccccccccccccCCCCccCEEEEECCccccccc-hHHHH
Confidence 5432 22222222 12356899999999998765421 23446789999999999987642 13345
Q ss_pred HHHHHHhhcCCCceEEEEEeecCC
Q psy15524 156 EFLEILKKQKPQFQSILLSATLTP 179 (930)
Q Consensus 156 ~i~~~l~~~~~~~~~i~lSAT~~~ 179 (930)
.++..++ ..++++|||||..
T Consensus 324 ~il~~~~----~~~~l~lTATP~~ 343 (590)
T 3h1t_A 324 EILEYFE----PAFQIGMTATPLR 343 (590)
T ss_dssp HHHHHST----TSEEEEEESSCSC
T ss_pred HHHHhCC----cceEEEecccccc
Confidence 5555543 4689999999975
|
| >4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=2.6e-16 Score=184.94 Aligned_cols=118 Identities=17% Similarity=0.273 Sum_probs=76.6
Q ss_pred HHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHHHHHHHHHHhhcCCCcEEEecc
Q psy15524 639 VALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTD 718 (930)
Q Consensus 639 ~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~v~~~F~~~~~~vLv~T~ 718 (930)
..+...+...+... +++++|||+|....+.+++.+... +.. ..-+++..+|..+++.|+ +...||+||.
T Consensus 434 ~~~~~~i~~l~~~~----~g~~lvlF~Sy~~l~~v~~~l~~~---~~~---~~q~~~~~~~~~ll~~f~-~~~~vL~~v~ 502 (620)
T 4a15_A 434 DRMATVIEDIILKV----KKNTIVYFPSYSLMDRVENRVSFE---HMK---EYRGIDQKELYSMLKKFR-RDHGTIFAVS 502 (620)
T ss_dssp HHHHHHHHHHHHHH----CSCEEEEESCHHHHHHHTSSCCSC---CEE---CCTTCCSHHHHHHHHHHT-TSCCEEEEET
T ss_pred HHHHHHHHHHHHhC----CCCEEEEeCCHHHHHHHHHHHHhc---chh---ccCCCChhHHHHHHHHhc-cCCcEEEEEe
Confidence 34444444443321 578999999999988888776521 222 455666678999999999 8888999985
Q ss_pred --ccccccCCCC--ccEEEEecCCCCh-----------------------------hhHHhhhcccccCCCCceEEEEeC
Q psy15524 719 --VAARGLDLPL--VDWIVQYTAPSSS-----------------------------TDYVHRVGRTARVGHEGSSLLFLI 765 (930)
Q Consensus 719 --~~~~GlDip~--v~~VI~~~~p~s~-----------------------------~~y~qr~GRagR~g~~g~~~~~~~ 765 (930)
.+++|||+|+ .+.||...+|... ....|-+||.-|...+-.+++++.
T Consensus 503 ~gsf~EGiD~~g~~l~~viI~~lPfp~~~p~~~ar~~~~~~~~g~~~~~~y~~pa~~~l~Qa~GRlIR~~~D~G~v~llD 582 (620)
T 4a15_A 503 GGRLSEGINFPGNELEMIILAGLPFPRPDAINRSLFDYYERKYGKGWEYSVVYPTAIKIRQEIGRLIRSAEDTGACVILD 582 (620)
T ss_dssp TSCC--------CCCCEEEESSCCCCCCCHHHHHHHHHHHHHHSCHHHHHTHHHHHHHHHHHHHTTCCSTTCCEEEEEEC
T ss_pred cCceeccccCCCCceEEEEEEcCCCCCCCHHHHHHHHHHHHhhCCCchHHhHHHHHHHHHHHhCccccCCCceEEEEEEc
Confidence 9999999985 5689988877521 112589999999877655566554
Q ss_pred cc
Q psy15524 766 PS 767 (930)
Q Consensus 766 ~~ 767 (930)
+.
T Consensus 583 ~R 584 (620)
T 4a15_A 583 KR 584 (620)
T ss_dssp GG
T ss_pred cc
Confidence 43
|
| >2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.9e-18 Score=203.97 Aligned_cols=150 Identities=18% Similarity=0.176 Sum_probs=98.3
Q ss_pred cCcHHHH-----HHHHHhh------cCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHH
Q psy15524 5 QVTTVQQ-----LSIQPIL------DGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQT 73 (930)
Q Consensus 5 ~l~~~Q~-----~ai~~~~------~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~ 73 (930)
.||++|+ ++|+.++ +|+|++++||||||||++|++|+++.+.. .+.++||++||++|+.|+
T Consensus 215 ~pt~IQ~~~r~~~aIp~~l~~~~l~~g~dvlv~apTGSGKTl~~ll~il~~l~~--------~~~~~lilaPTr~La~Q~ 286 (673)
T 2wv9_A 215 YVSAIVQGERVEEPVPEAYNPEMLKKRQLTVLDLHPGAGKTRRILPQIIKDAIQ--------KRLRTAVLAPTRVVAAEM 286 (673)
T ss_dssp EEEEEECC-------CCCCCGGGGSTTCEEEECCCTTTTTTTTHHHHHHHHHHH--------TTCCEEEEESSHHHHHHH
T ss_pred ccCceeeccccccchHHHhhHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHh--------CCCcEEEEccHHHHHHHH
Confidence 8999999 9999988 89999999999999999999999988764 246799999999999999
Q ss_pred HHHHHHHhhhcCCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCcHHH
Q psy15524 74 LEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERD 153 (930)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~~~~ 153 (930)
++.+..+. +....+... .....+.-+-+.+.+.+...+.. ...+.++++|||||+|++ +..+...
T Consensus 287 ~~~l~~~~-------i~~~~~~l~-----~v~tp~~ll~~l~~~~l~~~l~~--~~~l~~l~lvViDEaH~~-~~~~~~~ 351 (673)
T 2wv9_A 287 AEALRGLP-------VRYLTPAVQ-----REHSGNEIVDVMCHATLTHRLMS--PLRVPNYNLFVMDEAHFT-DPASIAA 351 (673)
T ss_dssp HHHTTTSC-------CEECCC--------CCCCSCCCEEEEEHHHHHHHHHS--SSCCCCCSEEEEESTTCC-CHHHHHH
T ss_pred HHHHhcCC-------eeeeccccc-----ccCCHHHHHHHHHhhhhHHHHhc--ccccccceEEEEeCCccc-CccHHHH
Confidence 99886442 111111000 00001112334444544444433 245889999999999998 2222233
Q ss_pred HHHHHHHHhhcCCCceEEEEEeecCC
Q psy15524 154 IAEFLEILKKQKPQFQSILLSATLTP 179 (930)
Q Consensus 154 ~~~i~~~l~~~~~~~~~i~lSAT~~~ 179 (930)
+..+...++ ..++|+++||||+++
T Consensus 352 ~~~l~~~~~--~~~~~vl~~SAT~~~ 375 (673)
T 2wv9_A 352 RGYIATRVE--AGEAAAIFMTATPPG 375 (673)
T ss_dssp HHHHHHHHH--TTSCEEEEECSSCTT
T ss_pred HHHHHHhcc--ccCCcEEEEcCCCCh
Confidence 333333332 245788888888865
|
| >2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=99.70 E-value=6.7e-17 Score=167.08 Aligned_cols=139 Identities=19% Similarity=0.133 Sum_probs=108.7
Q ss_pred CCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHHHHhhcc
Q psy15524 413 TQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKS 492 (930)
Q Consensus 413 ~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~ 492 (930)
..++++|.++++.++.++++++++|||+|||++++.++... +.+++|++|+++|+.|+.+.+.++
T Consensus 92 ~~l~~~Q~~ai~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~------------~~~~liv~P~~~L~~q~~~~~~~~--- 156 (237)
T 2fz4_A 92 ISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL------------STPTLIVVPTLALAEQWKERLGIF--- 156 (237)
T ss_dssp CCCCHHHHHHHHHHTTTSEEEEEESSSTTHHHHHHHHHHHS------------CSCEEEEESSHHHHHHHHHHHGGG---
T ss_pred CCcCHHHHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHHHc------------CCCEEEEeCCHHHHHHHHHHHHhC---
Confidence 37899999999999999999999999999999988877632 456999999999999999998873
Q ss_pred CCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhccCCcccccceEEEEecchhhhhcCcHHHHHHHHHHHhh
Q psy15524 493 FTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKK 572 (930)
Q Consensus 493 ~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~l~~~g~~~~l~~i~~~l~~ 572 (930)
+...+..+.|+.. ...+|+|+||+.+...... ...++++||+||||++.+.++.. ++..+
T Consensus 157 -~~~~v~~~~g~~~---------~~~~i~v~T~~~l~~~~~~----~~~~~~llIiDEaH~l~~~~~~~----i~~~~-- 216 (237)
T 2fz4_A 157 -GEEYVGEFSGRIK---------ELKPLTVSTYDSAYVNAEK----LGNRFMLLIFDEVHHLPAESYVQ----IAQMS-- 216 (237)
T ss_dssp -CGGGEEEESSSCB---------CCCSEEEEEHHHHHHTHHH----HTTTCSEEEEECSSCCCTTTHHH----HHHTC--
T ss_pred -CCCeEEEEeCCCC---------CcCCEEEEeHHHHHhhHHH----hcccCCEEEEECCccCCChHHHH----HHHhc--
Confidence 2222566666654 2579999999998766543 12468999999999998776543 33333
Q ss_pred cCccceEEEEccccCH
Q psy15524 573 QKPQFQSILLSATLTP 588 (930)
Q Consensus 573 ~~~~~q~vl~SAT~~~ 588 (930)
+..+++++|||++.
T Consensus 217 --~~~~~l~LSATp~r 230 (237)
T 2fz4_A 217 --IAPFRLGLTATFER 230 (237)
T ss_dssp --CCSEEEEEEESCC-
T ss_pred --cCCEEEEEecCCCC
Confidence 25688999999975
|
| >1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=2.8e-18 Score=194.57 Aligned_cols=133 Identities=19% Similarity=0.214 Sum_probs=91.6
Q ss_pred HhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHHhhhcCCceeEEeeCC
Q psy15524 16 PILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGG 95 (930)
Q Consensus 16 ~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~ 95 (930)
.+++|+|+++++|||||||++|++|+++.+.. .+.+++|++||++|+.|+++.+..+. +....+.
T Consensus 4 ~l~~g~~vlv~a~TGSGKT~~~l~~~l~~~~~--------~~~~~lil~Ptr~La~Q~~~~l~~~~-------v~~~~~~ 68 (440)
T 1yks_A 4 MLKKGMTTVLDFHPGAGKTRRFLPQILAECAR--------RRLRTLVLAPTRVVLSEMKEAFHGLD-------VKFHTQA 68 (440)
T ss_dssp TTSTTCEEEECCCTTSSTTTTHHHHHHHHHHH--------TTCCEEEEESSHHHHHHHHHHTTTSC-------EEEESSC
T ss_pred HhhCCCCEEEEcCCCCCHHHHHHHHHHHHHHh--------cCCeEEEEcchHHHHHHHHHHHhcCC-------eEEeccc
Confidence 46789999999999999999999999998764 24579999999999999999886432 2211111
Q ss_pred CchHHHHHHhcCCCcEEEEChHHHHHHHhc-------CCCccCCCccEEEEcccccccccCcHHHHHHHHHHHhhcCCCc
Q psy15524 96 EKMKSEKARIRKGISILVATPGRLLDHCKH-------TETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQF 168 (930)
Q Consensus 96 ~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~-------~~~~~l~~l~~vViDE~h~~~~~~~~~~~~~i~~~l~~~~~~~ 168 (930)
.. .++||+++.+++.. .....+.++++|||||+|++ +.++...+..+...+. ..++
T Consensus 69 ~~--------------~v~Tp~~l~~~l~~~~l~~~~~~~~~~~~l~~vViDEah~~-~~~~~~~~~~~~~~~~--~~~~ 131 (440)
T 1yks_A 69 FS--------------AHGSGREVIDAMCHATLTYRMLEPTRVVNWEVIIMDEAHFL-DPASIAARGWAAHRAR--ANES 131 (440)
T ss_dssp CC--------------CCCCSSCCEEEEEHHHHHHHHTSSSCCCCCSEEEETTTTCC-SHHHHHHHHHHHHHHH--TTSC
T ss_pred ce--------------eccCCccceeeecccchhHhhhCcccccCccEEEEECcccc-CcchHHHHHHHHHHhc--cCCc
Confidence 00 25666555433221 02234789999999999998 4444444333333332 3457
Q ss_pred eEEEEEeecCCC
Q psy15524 169 QSILLSATLTPA 180 (930)
Q Consensus 169 ~~i~lSAT~~~~ 180 (930)
|+++||||+++.
T Consensus 132 ~~l~~SAT~~~~ 143 (440)
T 1yks_A 132 ATILMTATPPGT 143 (440)
T ss_dssp EEEEECSSCTTC
T ss_pred eEEEEeCCCCch
Confidence 888888888764
|
| >2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A | Back alignment and structure |
|---|
Probab=99.69 E-value=7.9e-17 Score=182.26 Aligned_cols=136 Identities=14% Similarity=0.126 Sum_probs=93.2
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHHhhhcCCceeEEeeCCCch
Q psy15524 19 DGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKM 98 (930)
Q Consensus 19 ~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~ 98 (930)
+|+++++++|||||||++|++|+++.+.. .+.+++|++||++|+.|+++.+.. ..+....|+...
T Consensus 1 kg~~~lv~a~TGsGKT~~~l~~~l~~~~~--------~g~~~lvl~Pt~~La~Q~~~~~~~-------~~v~~~~~~~~~ 65 (431)
T 2v6i_A 1 KRELTVLDLHPGAGKTRRVLPQLVREAVK--------KRLRTVILAPTRVVASEMYEALRG-------EPIRYMTPAVQS 65 (431)
T ss_dssp -CCEEEEECCTTSCTTTTHHHHHHHHHHH--------TTCCEEEEESSHHHHHHHHHHTTT-------SCEEEC------
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHh--------CCCCEEEECcHHHHHHHHHHHhCC-------CeEEEEecCccc
Confidence 47899999999999999999999977654 245799999999999999987751 334444443211
Q ss_pred HHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCcHHHHHHHHHHHhhcCCCceEEEEEeecC
Q psy15524 99 KSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLT 178 (930)
Q Consensus 99 ~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~~~~~~~i~~~l~~~~~~~~~i~lSAT~~ 178 (930)
.-..+.-+.+.|.+.+...+.. ...+.++++|||||+|++ +.++......+.... ..+++++++||||++
T Consensus 66 -----~~~~~~~~~~~~~~~l~~~l~~--~~~~~~l~~vViDEaH~~-~~~~~~~~~~l~~~~--~~~~~~~l~~SAT~~ 135 (431)
T 2v6i_A 66 -----ERTGNEIVDFMCHSTFTMKLLQ--GVRVPNYNLYIMDEAHFL-DPASVAARGYIETRV--SMGDAGAIFMTATPP 135 (431)
T ss_dssp --------CCCSEEEEEHHHHHHHHHH--TCCCCCCSEEEEESTTCC-SHHHHHHHHHHHHHH--HTTSCEEEEEESSCT
T ss_pred -----cCCCCceEEEEchHHHHHHHhc--CccccCCCEEEEeCCccC-CccHHHHHHHHHHHh--hCCCCcEEEEeCCCC
Confidence 1112345677888888766554 345789999999999997 433333333333332 235689999999997
Q ss_pred C
Q psy15524 179 P 179 (930)
Q Consensus 179 ~ 179 (930)
+
T Consensus 136 ~ 136 (431)
T 2v6i_A 136 G 136 (431)
T ss_dssp T
T ss_pred c
Confidence 6
|
| >2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=99.68 E-value=1.6e-16 Score=164.20 Aligned_cols=138 Identities=20% Similarity=0.143 Sum_probs=108.3
Q ss_pred cCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHHhhhc
Q psy15524 5 QVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSF 84 (930)
Q Consensus 5 ~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~ 84 (930)
.|+++|+++++.++++.++++++|||+|||.+++.++... +.++||++|+++|+.|+.+.+.++
T Consensus 93 ~l~~~Q~~ai~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~------------~~~~liv~P~~~L~~q~~~~~~~~---- 156 (237)
T 2fz4_A 93 SLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL------------STPTLIVVPTLALAEQWKERLGIF---- 156 (237)
T ss_dssp CCCHHHHHHHHHHTTTSEEEEEESSSTTHHHHHHHHHHHS------------CSCEEEEESSHHHHHHHHHHHGGG----
T ss_pred CcCHHHHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHHHc------------CCCEEEEeCCHHHHHHHHHHHHhC----
Confidence 6899999999999999999999999999999998887642 235999999999999999998873
Q ss_pred CCce-eEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCcHHHHHHHHHHHhh
Q psy15524 85 TWIV-PSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKK 163 (930)
Q Consensus 85 ~~~~-~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~~~~~~~i~~~l~~ 163 (930)
+ .. +..+.|+.. ...+|+|+||+.+...... ....+++|||||+|++.+..+.. ++..+
T Consensus 157 ~-~~~v~~~~g~~~---------~~~~i~v~T~~~l~~~~~~----~~~~~~llIiDEaH~l~~~~~~~----i~~~~-- 216 (237)
T 2fz4_A 157 G-EEYVGEFSGRIK---------ELKPLTVSTYDSAYVNAEK----LGNRFMLLIFDEVHHLPAESYVQ----IAQMS-- 216 (237)
T ss_dssp C-GGGEEEESSSCB---------CCCSEEEEEHHHHHHTHHH----HTTTCSEEEEECSSCCCTTTHHH----HHHTC--
T ss_pred C-CCeEEEEeCCCC---------CcCCEEEEeHHHHHhhHHH----hcccCCEEEEECCccCCChHHHH----HHHhc--
Confidence 2 44 666666653 2578999999998776542 12568999999999998776543 33222
Q ss_pred cCCCceEEEEEeecCCC
Q psy15524 164 QKPQFQSILLSATLTPA 180 (930)
Q Consensus 164 ~~~~~~~i~lSAT~~~~ 180 (930)
+..++++|||||.+.
T Consensus 217 --~~~~~l~LSATp~r~ 231 (237)
T 2fz4_A 217 --IAPFRLGLTATFERE 231 (237)
T ss_dssp --CCSEEEEEEESCC--
T ss_pred --cCCEEEEEecCCCCC
Confidence 356899999999763
|
| >2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A | Back alignment and structure |
|---|
Probab=99.68 E-value=3e-17 Score=187.26 Aligned_cols=135 Identities=19% Similarity=0.198 Sum_probs=91.4
Q ss_pred HHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHHhhhcCCceeEEeeC
Q psy15524 15 QPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTG 94 (930)
Q Consensus 15 ~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g 94 (930)
..+.+|+++++++|||||||++|++|+++.+.. .+.++||++||++|+.|+++++... .+....+
T Consensus 16 ~~l~~~~~vlv~a~TGsGKT~~~~l~il~~~~~--------~~~~~lvl~Ptr~La~Q~~~~l~g~-------~v~~~~~ 80 (459)
T 2z83_A 16 NMLRKRQMTVLDLHPGSGKTRKILPQIIKDAIQ--------QRLRTAVLAPTRVVAAEMAEALRGL-------PVRYQTS 80 (459)
T ss_dssp GGGSTTCEEEECCCTTSCTTTTHHHHHHHHHHH--------TTCCEEEEECSHHHHHHHHHHTTTS-------CEEECC-
T ss_pred HHHhcCCcEEEECCCCCCHHHHHHHHHHHHHHh--------CCCcEEEECchHHHHHHHHHHhcCc-------eEeEEec
Confidence 345678899999999999999999999988764 2456999999999999999988622 1221111
Q ss_pred CCchHHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccc-----cccCcHHHHHHHHHHHhhcCCCce
Q psy15524 95 GEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRI-----LDQGYERDIAEFLEILKKQKPQFQ 169 (930)
Q Consensus 95 ~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~-----~~~~~~~~~~~i~~~l~~~~~~~~ 169 (930)
.... .-..+..+.++|.+.+...+.. ...++++++|||||||++ +..++... .. ..+++|
T Consensus 81 ~~~~-----~~t~~~~i~~~~~~~l~~~l~~--~~~l~~~~~iViDEaH~~~~~~~~~~~~~~~------~~--~~~~~~ 145 (459)
T 2z83_A 81 AVQR-----EHQGNEIVDVMCHATLTHRLMS--PNRVPNYNLFVMDEAHFTDPASIAARGYIAT------KV--ELGEAA 145 (459)
T ss_dssp ------------CCCSEEEEEHHHHHHHHHS--CC-CCCCSEEEESSTTCCSHHHHHHHHHHHH------HH--HTTSCE
T ss_pred cccc-----CCCCCcEEEEEchHHHHHHhhc--cccccCCcEEEEECCccCCchhhHHHHHHHH------Hh--ccCCcc
Confidence 1110 0122345778888888776654 245789999999999984 33332211 11 124678
Q ss_pred EEEEEeecCC
Q psy15524 170 SILLSATLTP 179 (930)
Q Consensus 170 ~i~lSAT~~~ 179 (930)
+++||||++.
T Consensus 146 ~il~SAT~~~ 155 (459)
T 2z83_A 146 AIFMTATPPG 155 (459)
T ss_dssp EEEECSSCTT
T ss_pred EEEEEcCCCc
Confidence 8888888865
|
| >2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* | Back alignment and structure |
|---|
Probab=99.67 E-value=5.4e-16 Score=186.66 Aligned_cols=158 Identities=21% Similarity=0.246 Sum_probs=103.1
Q ss_pred ccCcHHHHHHHHHhhc-CCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHHhh
Q psy15524 4 TQVTTVQQLSIQPILD-GGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCK 82 (930)
Q Consensus 4 ~~l~~~Q~~ai~~~~~-g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~ 82 (930)
..|++.|+++|+.++. |++++++||||||||. ++|++-.... .. ...+.++++++|+++|+.|+++++.....
T Consensus 92 ~lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTt--llp~ll~~~~-~~---~~~g~~ilvl~P~r~La~q~~~~l~~~~~ 165 (773)
T 2xau_A 92 ELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTT--QIPQFVLFDE-MP---HLENTQVACTQPRRVAAMSVAQRVAEEMD 165 (773)
T ss_dssp TSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHH--HHHHHHHHHH-CG---GGGTCEEEEEESCHHHHHHHHHHHHHHTT
T ss_pred cCChHHHHHHHHHHHhCCCeEEEECCCCCCHHH--HHHHHHHHhc-cc---cCCCceEEecCchHHHHHHHHHHHHHHhC
Confidence 3588899999998774 5689999999999999 5665522211 00 11256799999999999999988766543
Q ss_pred hcCCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEccccc-ccccCcHHHHHHHHHHH
Q psy15524 83 SFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADR-ILDQGYERDIAEFLEIL 161 (930)
Q Consensus 83 ~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~-~~~~~~~~~~~~i~~~l 161 (930)
......++....... ....+.+|+++||+++.+.+... ..+.++++|||||+|. .++..+ +..++..+
T Consensus 166 ~~v~~~vG~~i~~~~------~~~~~~~I~v~T~G~l~r~l~~~--~~l~~~~~lIlDEah~R~ld~d~---~~~~l~~l 234 (773)
T 2xau_A 166 VKLGEEVGYSIRFEN------KTSNKTILKYMTDGMLLREAMED--HDLSRYSCIILDEAHERTLATDI---LMGLLKQV 234 (773)
T ss_dssp CCBTTTEEEEETTEE------ECCTTCSEEEEEHHHHHHHHHHS--TTCTTEEEEEECSGGGCCHHHHH---HHHHHHHH
T ss_pred Cchhheecceecccc------ccCCCCCEEEECHHHHHHHHhhC--ccccCCCEEEecCccccccchHH---HHHHHHHH
Confidence 111112221111111 11245789999999999877642 3588999999999995 554322 22233333
Q ss_pred hhcCCCceEEEEEeecC
Q psy15524 162 KKQKPQFQSILLSATLT 178 (930)
Q Consensus 162 ~~~~~~~~~i~lSAT~~ 178 (930)
....++.+++++|||++
T Consensus 235 ~~~~~~~~iIl~SAT~~ 251 (773)
T 2xau_A 235 VKRRPDLKIIIMSATLD 251 (773)
T ss_dssp HHHCTTCEEEEEESCSC
T ss_pred HHhCCCceEEEEecccc
Confidence 33345667777777774
|
| >2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B* | Back alignment and structure |
|---|
Probab=99.67 E-value=1.4e-16 Score=195.22 Aligned_cols=155 Identities=17% Similarity=0.164 Sum_probs=114.0
Q ss_pred cCcHHHHHHHHHhhc--------------CCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHH
Q psy15524 5 QVTTVQQLSIQPILD--------------GGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELA 70 (930)
Q Consensus 5 ~l~~~Q~~ai~~~~~--------------g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~ 70 (930)
.|+|+|.+|++.+++ +++.+++++||||||+++ ++++..+.. .....++|||+|+++|+
T Consensus 271 ~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~-~~l~~ll~~------~~~~~rvLvlvpr~eL~ 343 (1038)
T 2w00_A 271 VMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTS-FKAARLATE------LDFIDKVFFVVDRKDLD 343 (1038)
T ss_dssp ECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHH-HHHHHHHTT------CTTCCEEEEEECGGGCC
T ss_pred cCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHH-HHHHHHHHh------cCCCceEEEEeCcHHHH
Confidence 599999999999875 368999999999999997 666655432 12235799999999999
Q ss_pred HHHHHHHHHHhhhcCCceeEEeeCCCchHHHHHHhc-CCCcEEEEChHHHHHHHhcCC-CccCCCccEEEEccccccccc
Q psy15524 71 LQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIR-KGISILVATPGRLLDHCKHTE-TLKFSKVEHLVLDEADRILDQ 148 (930)
Q Consensus 71 ~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~-~~~~Ilv~Tp~~l~~~l~~~~-~~~l~~l~~vViDE~h~~~~~ 148 (930)
.|+.+.+..+... .+.++.+.......+. .+++|+|+||+++...+.... ...+....+||+||||++...
T Consensus 344 ~Q~~~~f~~f~~~-------~v~~~~s~~~l~~~L~~~~~~IiVtTiqkl~~~l~~~~~~~~~~~~~lvIiDEAHrs~~~ 416 (1038)
T 2w00_A 344 YQTMKEYQRFSPD-------SVNGSENTAGLKRNLDKDDNKIIVTTIQKLNNLMKAESDLPVYNQQVVFIFDECHRSQFG 416 (1038)
T ss_dssp HHHHHHHHTTSTT-------CSSSSCCCHHHHHHHHCSSCCEEEEEHHHHHHHHHHCCCCGGGGSCEEEEEESCCTTHHH
T ss_pred HHHHHHHHHhccc-------ccccccCHHHHHHHhcCCCCCEEEEEHHHHHHHHhcccchhccccccEEEEEccchhcch
Confidence 9999999887542 1234445555555553 568999999999998775432 223567899999999997642
Q ss_pred CcHHHHHHHHHHHhhcCCCceEEEEEeecCCC
Q psy15524 149 GYERDIAEFLEILKKQKPQFQSILLSATLTPA 180 (930)
Q Consensus 149 ~~~~~~~~i~~~l~~~~~~~~~i~lSAT~~~~ 180 (930)
+ .+..+...+ ++.+++||||||...
T Consensus 417 ~---~~~~I~~~~----p~a~~lgfTATP~~~ 441 (1038)
T 2w00_A 417 E---AQKNLKKKF----KRYYQFGFTGTPIFP 441 (1038)
T ss_dssp H---HHHHHHHHC----SSEEEEEEESSCCCS
T ss_pred H---HHHHHHHhC----CcccEEEEeCCcccc
Confidence 2 233444333 457999999999753
|
| >1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=99.65 E-value=5.8e-16 Score=162.69 Aligned_cols=128 Identities=15% Similarity=0.247 Sum_probs=96.4
Q ss_pred CchhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHHHHHHHHHHhhcC-CC
Q psy15524 633 PPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSV-KS 711 (930)
Q Consensus 633 ~~~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~v~~~F~~~-~~ 711 (930)
....|+..+..++..... .+.++||||.+...++.+...|.... |+.+..+||++++.+|..++++|+++ ..
T Consensus 93 ~~s~K~~~L~~ll~~~~~-----~~~kvlIFs~~~~~~~~l~~~L~~~~--g~~~~~l~G~~~~~~R~~~i~~F~~~~~~ 165 (271)
T 1z5z_A 93 RRSGKMIRTMEIIEEALD-----EGDKIAIFTQFVDMGKIIRNIIEKEL--NTEVPFLYGELSKKERDDIISKFQNNPSV 165 (271)
T ss_dssp TTCHHHHHHHHHHHHHHH-----TTCCEEEEESCHHHHHHHHHHHHHHH--CSCCCEECTTSCHHHHHHHHHHHHHCTTC
T ss_pred ccCHHHHHHHHHHHHHHh-----CCCeEEEEeccHHHHHHHHHHHHHhc--CCcEEEEECCCCHHHHHHHHHHhcCCCCC
Confidence 456788888888876532 26799999999999999999997632 56777889999999999999999998 66
Q ss_pred c-EEEeccccccccCCCCccEEEEecCCCChhhHHhhhcccccCCCCceE--EEEeCcc
Q psy15524 712 G-VLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSS--LLFLIPS 767 (930)
Q Consensus 712 ~-vLv~T~~~~~GlDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~g~~--~~~~~~~ 767 (930)
. +|+||+++++|+|++++++||+||+|+++..|.||+||++|.|+.+.+ +.|++..
T Consensus 166 ~v~L~st~~~g~Glnl~~a~~VI~~d~~wnp~~~~Q~~gR~~R~Gq~~~v~v~~li~~~ 224 (271)
T 1z5z_A 166 KFIVLSVKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVG 224 (271)
T ss_dssp CEEEEECCTTCCCCCCTTCSEEEECSCCSCTTTC--------------CCEEEEEEETT
T ss_pred CEEEEehhhhcCCcCcccCCEEEEECCCCChhHHHHHHHhccccCCCCceEEEEEeeCC
Confidence 6 789999999999999999999999999999999999999999998765 3445544
|
| >1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A | Back alignment and structure |
|---|
Probab=99.52 E-value=1.3e-13 Score=159.99 Aligned_cols=149 Identities=19% Similarity=0.147 Sum_probs=105.0
Q ss_pred cCcHHHHHHHHHh----hcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHH
Q psy15524 5 QVTTVQQLSIQPI----LDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKL 80 (930)
Q Consensus 5 ~l~~~Q~~ai~~~----~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~ 80 (930)
.|+|+|.++++.+ ..|.+++++.+||+|||++++..+...... ....++|||+| .+|+.|+.++++++
T Consensus 37 ~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~~i~~~~~~-------~~~~~~LIv~P-~~l~~qw~~e~~~~ 108 (500)
T 1z63_A 37 NLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSDAKKE-------NELTPSLVICP-LSVLKNWEEELSKF 108 (500)
T ss_dssp CCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHHHHHHHT-------TCCSSEEEEEC-STTHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHHHHHHHHHhc-------CCCCCEEEEcc-HHHHHHHHHHHHHH
Confidence 6999999999876 357899999999999999976555443322 22345999999 56999999999988
Q ss_pred hhhcCCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCcHHHHHHHHHH
Q psy15524 81 CKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEI 160 (930)
Q Consensus 81 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~~~~~~~i~~~ 160 (930)
+.. ..+..+.|+... .....++|+|+||+.+..... +....+++||+||||++...+. .....+..
T Consensus 109 ~~~---~~v~~~~g~~~~-----~~~~~~~ivi~t~~~l~~~~~----l~~~~~~~vIvDEaH~~kn~~~--~~~~~l~~ 174 (500)
T 1z63_A 109 APH---LRFAVFHEDRSK-----IKLEDYDIILTTYAVLLRDTR----LKEVEWKYIVIDEAQNIKNPQT--KIFKAVKE 174 (500)
T ss_dssp CTT---SCEEECSSSTTS-----CCGGGSSEEEEEHHHHTTCHH----HHTCCEEEEEEETGGGGSCTTS--HHHHHHHT
T ss_pred CCC---ceEEEEecCchh-----ccccCCcEEEeeHHHHhccch----hcCCCcCEEEEeCccccCCHhH--HHHHHHHh
Confidence 643 445555555421 112357999999999865432 3345789999999999975542 12223333
Q ss_pred HhhcCCCceEEEEEeecCC
Q psy15524 161 LKKQKPQFQSILLSATLTP 179 (930)
Q Consensus 161 l~~~~~~~~~i~lSAT~~~ 179 (930)
+ +..++++|||||..
T Consensus 175 l----~~~~~l~LTaTP~~ 189 (500)
T 1z63_A 175 L----KSKYRIALTGTPIE 189 (500)
T ss_dssp S----CEEEEEEECSSCST
T ss_pred h----ccCcEEEEecCCCC
Confidence 3 23478999999954
|
| >3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=99.51 E-value=6.1e-14 Score=173.59 Aligned_cols=161 Identities=17% Similarity=0.129 Sum_probs=109.3
Q ss_pred cCcHHHHHHHHHhhc--CCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHHhh
Q psy15524 5 QVTTVQQLSIQPILD--GGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCK 82 (930)
Q Consensus 5 ~l~~~Q~~ai~~~~~--g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~ 82 (930)
+|+|+|.+++..++. +.++|++++||+|||++++..+...+.. ....++|||+|+ +|+.|+.+.+.+.+.
T Consensus 153 ~LrpyQ~eav~~~l~~~~~~~LLad~tGlGKTi~Ai~~i~~l~~~-------g~~~rvLIVvP~-sLl~Qw~~E~~~~f~ 224 (968)
T 3dmq_A 153 SLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLS-------GAAERVLIIVPE-TLQHQWLVEMLRRFN 224 (968)
T ss_dssp CCCHHHHHHHHHHHHSSSCEEEECCCTTSCHHHHHHHHHHHHHHT-------SSCCCEEEECCT-TTHHHHHHHHHHHSC
T ss_pred CCcHHHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHHh-------CCCCeEEEEeCH-HHHHHHHHHHHHHhC
Confidence 689999999998876 4589999999999999998887766643 223359999999 999999999987762
Q ss_pred hcCCceeEEeeCCCchHHHHH--HhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCcH-HHHHHHHH
Q psy15524 83 SFTWIVPSWLTGGEKMKSEKA--RIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYE-RDIAEFLE 159 (930)
Q Consensus 83 ~~~~~~~~~~~g~~~~~~~~~--~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~~-~~~~~i~~ 159 (930)
..+..+.++........ ......+|+|+|++.+.........+...++++|||||||++...+.. ......+.
T Consensus 225 ----l~v~v~~~~~~~~~~~~~~~~~~~~dIvI~T~~~L~~~~~~~~~l~~~~~dlVIvDEAH~~kn~~~~~s~~~~~l~ 300 (968)
T 3dmq_A 225 ----LRFALFDDERYAEAQHDAYNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSREYQAIE 300 (968)
T ss_dssp ----CCCEECCHHHHHHHHHTTCSSSTTCSEEEECHHHHHTSTTTTHHHHTSCCCEEEECCSSCCCCBTTBCCHHHHHHH
T ss_pred ----CCEEEEccchhhhhhhhcccccccCCEEEEcHHHHhhCHHHHHHhhhcCCCEEEehhhHhhcCCCCcchHHHHHHH
Confidence 34444433322111111 112347999999998864322212234568999999999999755422 12233344
Q ss_pred HHhhcCCCceEEEEEeecCC
Q psy15524 160 ILKKQKPQFQSILLSATLTP 179 (930)
Q Consensus 160 ~l~~~~~~~~~i~lSAT~~~ 179 (930)
.+.. ...++++|||||.+
T Consensus 301 ~L~~--~~~~~L~LTATPi~ 318 (968)
T 3dmq_A 301 QLAE--HVPGVLLLTATPEQ 318 (968)
T ss_dssp HHHT--TCSSEEESCSSCSS
T ss_pred HHhh--cCCcEEEEEcCCcc
Confidence 4432 23469999999954
|
| >3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A | Back alignment and structure |
|---|
Probab=99.49 E-value=1.8e-14 Score=169.35 Aligned_cols=132 Identities=21% Similarity=0.098 Sum_probs=95.2
Q ss_pred HHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHHhhhcCCceeEEeeC
Q psy15524 15 QPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTG 94 (930)
Q Consensus 15 ~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g 94 (930)
...+.|++++++||||||||+ +++..+... ..++|++||++||.|+++++++.+ ..+..++|
T Consensus 150 ar~l~rk~vlv~apTGSGKT~----~al~~l~~~---------~~gl~l~PtR~LA~Qi~~~l~~~g-----~~v~lltG 211 (677)
T 3rc3_A 150 ARAMQRKIIFHSGPTNSGKTY----HAIQKYFSA---------KSGVYCGPLKLLAHEIFEKSNAAG-----VPCDLVTG 211 (677)
T ss_dssp HHTSCCEEEEEECCTTSSHHH----HHHHHHHHS---------SSEEEEESSHHHHHHHHHHHHHTT-----CCEEEECS
T ss_pred HHhcCCCEEEEEcCCCCCHHH----HHHHHHHhc---------CCeEEEeCHHHHHHHHHHHHHhcC-----CcEEEEEC
Confidence 345688999999999999998 444444431 125999999999999999998763 56777778
Q ss_pred CCchHHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCcHHHHHHHHHHHhhcCCCceEEEEE
Q psy15524 95 GEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLS 174 (930)
Q Consensus 95 ~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~~~~~~~i~~~l~~~~~~~~~i~lS 174 (930)
+...... .-....+++++|++.+. ....+++|||||+|++++.+|+..+..++..++. ...+++++|
T Consensus 212 ~~~~iv~--TpGr~~~il~~T~e~~~---------l~~~v~lvVIDEaH~l~d~~~g~~~~~~l~~l~~--~~i~il~~S 278 (677)
T 3rc3_A 212 EERVTVQ--PNGKQASHVSCTVEMCS---------VTTPYEVAVIDEIQMIRDPARGWAWTRALLGLCA--EEVHLCGEP 278 (677)
T ss_dssp SCEECCS--TTCCCCSEEEEEGGGCC---------SSSCEEEEEECSGGGGGCTTTHHHHHHHHHHCCE--EEEEEEECG
T ss_pred CeeEEec--CCCcccceeEecHhHhh---------hcccCCEEEEecceecCCccchHHHHHHHHccCc--cceEEEecc
Confidence 7654100 00112678888876431 2467899999999999999999988887776652 345677777
Q ss_pred eec
Q psy15524 175 ATL 177 (930)
Q Consensus 175 AT~ 177 (930)
||.
T Consensus 279 AT~ 281 (677)
T 3rc3_A 279 AAI 281 (677)
T ss_dssp GGH
T ss_pred chH
Confidence 773
|
| >3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1* | Back alignment and structure |
|---|
Probab=99.44 E-value=3e-13 Score=157.99 Aligned_cols=132 Identities=17% Similarity=0.061 Sum_probs=98.1
Q ss_pred CCccCcHHHHHHHHH----hhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHH
Q psy15524 2 NITQVTTVQQLSIQP----ILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIF 77 (930)
Q Consensus 2 g~~~l~~~Q~~ai~~----~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~ 77 (930)
|| +++|.|.+++.. +..|+++++.||||+|||++|++|++.. +.+++|++||++|+.|+.+.+
T Consensus 1 ~~-~~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~~------------~~~v~i~~pt~~l~~q~~~~~ 67 (551)
T 3crv_A 1 MV-KLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLEV------------KPKVLFVVRTHNEFYPIYRDL 67 (551)
T ss_dssp CC-SCCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHHH------------CSEEEEEESSGGGHHHHHHHH
T ss_pred CC-CCCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHHhC------------CCeEEEEcCCHHHHHHHHHHH
Confidence 56 699999997765 4578999999999999999999999971 457999999999999999988
Q ss_pred HHHhhhcCCceeEEeeCCCch---------------------------------HHH------------------HHHhc
Q psy15524 78 TKLCKSFTWIVPSWLTGGEKM---------------------------------KSE------------------KARIR 106 (930)
Q Consensus 78 ~~~~~~~~~~~~~~~~g~~~~---------------------------------~~~------------------~~~l~ 106 (930)
..+....+ +.+..+.|..+. ... .....
T Consensus 68 ~~l~~~~~-~~~~~l~gr~~~c~~~~~~~~~~~~~c~~c~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~Cpy~~ar~~~ 146 (551)
T 3crv_A 68 TKIREKRN-ITFSFLVGKPSSCLYAEKGAESEDIPCKYCELKGSIVEVKTDDSPLSLVKKLKKDGLQDKFCPYYSLLNSL 146 (551)
T ss_dssp TTCCCSSC-CCEEECCCHHHHCTTBCTTCCGGGCCGGGCTTTTCCCCCCCCSCHHHHHHHHHHHHHHHTCCHHHHHHHHG
T ss_pred HHHhhhcC-ccEEEEccccccCcCchhcCCCcccccCCCCCccccccccccCCHHHHHHHHHHcCCcCCcCccHHHHhhh
Confidence 88755433 444444442210 011 12234
Q ss_pred CCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccc
Q psy15524 107 KGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILD 147 (930)
Q Consensus 107 ~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~ 147 (930)
..+||||+|+..|.+...+...........+||||||.+.+
T Consensus 147 ~~adIVV~~~~~l~~~~~~~~~~~~~~~~~vIiDEAHnl~d 187 (551)
T 3crv_A 147 YKADVIALTYPYFFIDRYREFIDIDLREYMIVIDEAHNLDK 187 (551)
T ss_dssp GGCSEEEEETHHHHCHHHHTTSCCCSTTEEEEETTGGGGGG
T ss_pred hcCCEEEeCchHhcCHHHHHhcCCCcCCeEEEEecccchHH
Confidence 56899999999998875443321224678999999999987
|
| >1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=99.39 E-value=1.6e-11 Score=145.90 Aligned_cols=161 Identities=19% Similarity=0.214 Sum_probs=108.3
Q ss_pred cCcHHHHHHHHHhh---------cCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHH
Q psy15524 5 QVTTVQQLSIQPIL---------DGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLE 75 (930)
Q Consensus 5 ~l~~~Q~~ai~~~~---------~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~ 75 (930)
.|+|+|.+++..+. .+.+.|++.+||.|||+.++..+...+...... .....++|||+|+ +|+.|+.+
T Consensus 55 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~~~--~p~~~~~LiV~P~-sll~qW~~ 131 (644)
T 1z3i_X 55 VLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDC--KPEIDKVIVVSPS-SLVRNWYN 131 (644)
T ss_dssp TCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTTS--SCSCSCEEEEECH-HHHHHHHH
T ss_pred cccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHHHHhCccc--cCCCCcEEEEecH-HHHHHHHH
Confidence 68999999998863 456799999999999999877776554432110 1123458999997 89999999
Q ss_pred HHHHHhhhcCCceeEEeeCCCchHHHH---HHhcC-----CCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccc
Q psy15524 76 IFTKLCKSFTWIVPSWLTGGEKMKSEK---ARIRK-----GISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILD 147 (930)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~l~~-----~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~ 147 (930)
++.+++.. ......+.++....... ..... ..+|+|+|++.+.... ..+....+++||+||||++-.
T Consensus 132 E~~~~~~~--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~---~~l~~~~~~~vI~DEaH~ikn 206 (644)
T 1z3i_X 132 EVGKWLGG--RVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHA---EVLHKGKVGLVICDEGHRLKN 206 (644)
T ss_dssp HHHHHHGG--GCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHT---TTTTTSCCCEEEETTGGGCCT
T ss_pred HHHHHcCC--CeeEEEEeCCCHHHHHHHHHHHHHhcCCCCCCcEEEeeHHHHHhhH---HHhhcCCccEEEEECceecCC
Confidence 99999754 23344455554332211 11211 3789999999987653 233445789999999999864
Q ss_pred cCcHHHHHHHHHHHhhcCCCceEEEEEeecCC
Q psy15524 148 QGYERDIAEFLEILKKQKPQFQSILLSATLTP 179 (930)
Q Consensus 148 ~~~~~~~~~i~~~l~~~~~~~~~i~lSAT~~~ 179 (930)
... .....+..++ ..+.++|||||-.
T Consensus 207 ~~~--~~~~al~~l~----~~~rl~LTgTPiq 232 (644)
T 1z3i_X 207 SDN--QTYLALNSMN----AQRRVLISGTPIQ 232 (644)
T ss_dssp TCH--HHHHHHHHHC----CSEEEEECSSCSG
T ss_pred hhh--HHHHHHHhcc----cCcEEEEecCccc
Confidence 331 2223333332 3478999999954
|
| >3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.37 E-value=4.5e-12 Score=154.64 Aligned_cols=155 Identities=19% Similarity=0.193 Sum_probs=108.5
Q ss_pred cCcHHHHHHHHHhh----cCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHH
Q psy15524 5 QVTTVQQLSIQPIL----DGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKL 80 (930)
Q Consensus 5 ~l~~~Q~~ai~~~~----~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~ 80 (930)
+|+|+|.+++..+. .+.+.|++.+||.|||+.++..+...+..... ...+|||+| .+|+.|+.+++.++
T Consensus 236 ~Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT~~ai~~i~~l~~~~~~------~~~~LIV~P-~sll~qW~~E~~~~ 308 (800)
T 3mwy_W 236 ELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFARRQ------NGPHIIVVP-LSTMPAWLDTFEKW 308 (800)
T ss_dssp CCCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTTHHHHHHHHHHHHHHSC------CSCEEEECC-TTTHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHhhcCCCEEEEeCCCcchHHHHHHHHHHHHHhcCC------CCCEEEEEC-chHHHHHHHHHHHH
Confidence 68999999998665 78899999999999999977766555443221 234899999 78999999999988
Q ss_pred hhhcCCceeEEeeCCCchHHHHHH------------hcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEccccccccc
Q psy15524 81 CKSFTWIVPSWLTGGEKMKSEKAR------------IRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQ 148 (930)
Q Consensus 81 ~~~~~~~~~~~~~g~~~~~~~~~~------------l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~ 148 (930)
+. ...+..+.|+......... ....++|+|+|++.+...... +....+++|||||||++-..
T Consensus 309 ~p---~~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~~~~---l~~~~w~~vIvDEaH~lkn~ 382 (800)
T 3mwy_W 309 AP---DLNCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRAE---LGSIKWQFMAVDEAHRLKNA 382 (800)
T ss_dssp ST---TCCEEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHTHHH---HHTSEEEEEEETTGGGGCCS
T ss_pred CC---CceEEEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecHHHHHhhHHH---HhcCCcceeehhhhhhhcCc
Confidence 64 3566666666554433222 123478999999999765332 22336789999999998543
Q ss_pred CcHHHHHHHHHHHhhcCCCceEEEEEeecC
Q psy15524 149 GYERDIAEFLEILKKQKPQFQSILLSATLT 178 (930)
Q Consensus 149 ~~~~~~~~i~~~l~~~~~~~~~i~lSAT~~ 178 (930)
.- .....+..+ .....++|||||-
T Consensus 383 ~s--~~~~~l~~l----~~~~rl~LTgTPi 406 (800)
T 3mwy_W 383 ES--SLYESLNSF----KVANRMLITGTPL 406 (800)
T ss_dssp SS--HHHHHHTTS----EEEEEEEECSCCC
T ss_pred hh--HHHHHHHHh----hhccEEEeeCCcC
Confidence 21 222223223 2346799999994
|
| >2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.30 E-value=2.2e-12 Score=150.00 Aligned_cols=128 Identities=17% Similarity=0.152 Sum_probs=85.4
Q ss_pred CCCccCcHHHHHHHHH----hhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHH
Q psy15524 1 MNITQVTTVQQLSIQP----ILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEI 76 (930)
Q Consensus 1 ~g~~~l~~~Q~~ai~~----~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~ 76 (930)
+|| +|+|+|.+++.. +..|+++++.||||+|||++|++|++.. +.+++|++||++|+.|+.+.
T Consensus 4 ~~~-~~r~~Q~~~~~~v~~~~~~~~~~~~~a~TGtGKT~~~l~~~~~~------------~~~~~~~~~t~~l~~q~~~~ 70 (540)
T 2vl7_A 4 LKL-QLRQWQAEKLGEAINALKHGKTLLLNAKPGLGKTVFVEVLGMQL------------KKKVLIFTRTHSQLDSIYKN 70 (540)
T ss_dssp ------CCHHHHHHHHHHHHHHTTCEEEEECCTTSCHHHHHHHHHHHH------------TCEEEEEESCHHHHHHHHHH
T ss_pred CCC-CCCHHHHHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHhC------------CCcEEEEcCCHHHHHHHHHH
Confidence 477 799999998754 4578999999999999999999998753 35699999999999999988
Q ss_pred HHHHhhhcCCceeEEeeCCCc--------hH---------------------------------------HHHHHhcCCC
Q psy15524 77 FTKLCKSFTWIVPSWLTGGEK--------MK---------------------------------------SEKARIRKGI 109 (930)
Q Consensus 77 ~~~~~~~~~~~~~~~~~g~~~--------~~---------------------------------------~~~~~l~~~~ 109 (930)
+..+. ..+..+.|... .. ...+.....+
T Consensus 71 ~~~l~-----~~~~~l~gr~~lC~~~~~~~~~~~~~c~~c~~~~~~~~~gd~~~~~~~~~~~~~~~~Cpy~~~r~~~~~a 145 (540)
T 2vl7_A 71 AKLLG-----LKTGFLIGKSASCIYAQGDEEPDEINCSKCRLKDKIKTIEDKEPSKLIEEFKDAVDYCPYYSLRANLKDK 145 (540)
T ss_dssp HGGGT-----CCEEEC---------------------------------------------------------CTTGGGC
T ss_pred HHhcC-----CcEEEecCCccccCCchhcccccccCCCCCCchhcccccccCCcHHHHHHHhhhcCCChHHHHHHHhhcC
Confidence 87642 22222222110 00 0001112357
Q ss_pred cEEEEChHHHHHHHhcCCCc------cCCCccEEEEccccccc
Q psy15524 110 SILVATPGRLLDHCKHTETL------KFSKVEHLVLDEADRIL 146 (930)
Q Consensus 110 ~Ilv~Tp~~l~~~l~~~~~~------~l~~l~~vViDE~h~~~ 146 (930)
+|+|+|+..+.+........ .+.....+||||||.+.
T Consensus 146 diVV~n~~~l~~~~~~~~~~~~~~~~~~~~~~~vIiDEAHnl~ 188 (540)
T 2vl7_A 146 DVIAMTYPYLFQKPIRNSVFCNKDDCLKLEDYLIVIDEAHNLL 188 (540)
T ss_dssp SEEEEETHHHHSHHHHHHHSCSSTTSCCGGGEEEEETTGGGGG
T ss_pred CEEEEChHHhcCHHHHHhhCcccccccCcCCCEEEEEccccHH
Confidence 99999999998754331111 23567899999999993
|
| >3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=2.1e-10 Score=130.95 Aligned_cols=301 Identities=15% Similarity=0.107 Sum_probs=172.5
Q ss_pred CCccCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHHh
Q psy15524 2 NITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLC 81 (930)
Q Consensus 2 g~~~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~ 81 (930)
|. .|++.|.-..-.+..|+ +..+.||+|||+++.+|++-..+. |..+.|++|+..||.|-++.+..+.
T Consensus 73 g~-r~~dvQligg~~L~~G~--iaEM~TGEGKTLva~lp~~lnAL~---------G~~vhVvT~ndyLA~rdae~m~~l~ 140 (822)
T 3jux_A 73 GM-RPFDVQVMGGIALHEGK--VAEMKTGEGKTLAATMPIYLNALI---------GKGVHLVTVNDYLARRDALWMGPVY 140 (822)
T ss_dssp SC-CCCHHHHHHHHHHHTTC--EEECCTTSCHHHHTHHHHHHHHTT---------SSCEEEEESSHHHHHHHHHHHHHHH
T ss_pred CC-CCcHHHHHHHHHHhCCC--hhhccCCCCccHHHHHHHHHHHhc---------CCceEEEeccHHHHHhHHHHHHHHH
Confidence 44 47899998888888886 999999999999999999754433 4559999999999999999999999
Q ss_pred hhcCCceeEEeeCCC-------------------------------------------------chHHHHHHhcCCCcEE
Q psy15524 82 KSFTWIVPSWLTGGE-------------------------------------------------KMKSEKARIRKGISIL 112 (930)
Q Consensus 82 ~~~~~~~~~~~~g~~-------------------------------------------------~~~~~~~~l~~~~~Il 112 (930)
..++ +.+++..... ......+. .-.|||.
T Consensus 141 ~~Lg-lsvg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~err~-aY~~DIt 218 (822)
T 3jux_A 141 LFLG-LRVGVINSLGKSYEVVWKNPDLARKAIEENWSVWPDGFNGEVLKEESMNKEAVEAFQVELKEITRKE-AYLCDVT 218 (822)
T ss_dssp HHTT-CCEEEEETTTEEEEEEESSHHHHHHHHHTTCCSSCTTCCSSSCCGGGSCHHHHTTTCEECCBCCHHH-HHHSSEE
T ss_pred HHhC-CEEEEEcCCCcccccccccchhhhhhhcccccccccccccccccccccccccchhccccCCHHHHHH-HhcCCCE
Confidence 8877 6777666620 00011111 1237999
Q ss_pred EEChHHHH-HHHhc-----CCCccCCCccEEEEccccccc-ccCcH-----------HH-HHHHHHHHhhcC--------
Q psy15524 113 VATPGRLL-DHCKH-----TETLKFSKVEHLVLDEADRIL-DQGYE-----------RD-IAEFLEILKKQK-------- 165 (930)
Q Consensus 113 v~Tp~~l~-~~l~~-----~~~~~l~~l~~vViDE~h~~~-~~~~~-----------~~-~~~i~~~l~~~~-------- 165 (930)
+||..-+- +.|+. ......+.+.+.||||+|.++ |..+- .. +..+-...+...
T Consensus 219 YgTn~EfgFDYLRDnm~~~~~~~vqR~~~~aIVDEvDSiLIDeArtPLiISg~~~~~~~~y~~~~~~v~~l~~~~dy~vd 298 (822)
T 3jux_A 219 YGTNNEFGFDYLRDNLVLDYNDKVQRGHFYAIVDEADSVLIDEARTPLIISGPSKESPSVYRRFAQIAKKFVKDKDFTVD 298 (822)
T ss_dssp EEEHHHHHHHHHHHTSCSSTTSCCCCCCCEEEEETHHHHHTTGGGSCEEEECCCCSCHHHHHHHHHHTTSSCBTTTEEEC
T ss_pred EccCcchhhHhHHhhccCCHHHhccCCCCeEEEecccceeecCCCCCceeeCCCCCccHHHHHHHHHHHhcCcCCcEEEE
Confidence 99998763 33332 122335789999999999864 43321 11 112111112111
Q ss_pred CCceEEEEEeec--------CCCccccccc-------------cccccccccchhh-------hhh-hhh-hhccchhhH
Q psy15524 166 PQFQSILLSATL--------TPATCWCKHT-------------ETLKFSKVEHLVL-------DEA-DRI-LDQGYERDI 215 (930)
Q Consensus 166 ~~~~~i~lSAT~--------~~~~~~~~~~-------------~~~~~~~~~~~~~-------de~-~~~-~~~~~~~~~ 215 (930)
..-+.+.||..- .-.+.+-... ..+...++.++|. ||. .++ -+..+.+.+
T Consensus 299 ek~~~v~lTe~G~~~~E~~l~i~nly~~~n~~l~~~i~~AL~A~~l~~~d~dYiV~dg~V~iVDe~TGR~m~grr~s~GL 378 (822)
T 3jux_A 299 EKARTIILTEEGVAKAEKIIGVENLYDPGNVSLLYHLINALKALHLFKKDVDYVVMNGEVIIVDEFTGRLLPGRRYSGGL 378 (822)
T ss_dssp CSSSCEEECHHHHHHHHHHHTCSCTTSGGGHHHHHHHHHHHHHHHHSTTTSSEEEETTEEEECSSSSCSCCCSCCCGGGH
T ss_pred cccCeEEECHHHHHHHHHHhCCccccchhhhHHHHHHHHHHHHHHHHcCCCcEEEECCEEEEEECCCCcCCCCCcCchHH
Confidence 112233333210 0000110000 0001111222222 221 111 112233333
Q ss_pred HHHHHHHhhc---C---------------cCceEEEEecccchHHHHhhhccccCCeeeccCCcccccCCCcccccCCCc
Q psy15524 216 AEFLEILKKQ---K---------------PQFQSVLLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSL 277 (930)
Q Consensus 216 ~~~~~~~~~~---~---------------~~~q~~~~sat~~~~~~~l~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~i 277 (930)
...++.-... + .......+|+|.......+...|--+.+. +.... ....+
T Consensus 379 HQaiEaKEgv~i~~e~~tla~IT~Qn~Fr~Y~kL~GMTGTa~te~~Ef~~iY~l~vv~--IPtnk----------p~~R~ 446 (822)
T 3jux_A 379 HQAIEAKEGVPIKEESITYATITFQNYFRMYEKLAGMTGTAKTEESEFVQVYGMEVVV--IPTHK----------PMIRK 446 (822)
T ss_dssp HHHHHHHHSSCCCCCCCEEEEECHHHHHTTSSEEEEEESSCGGGHHHHHHHSCCCEEE--CCCSS----------CCCCE
T ss_pred HHHHHHHcCCCCCCCcchhHHHHHHHHHHHhhHHeEECCCCchHHHHHHHHhCCeEEE--ECCCC----------Cccee
Confidence 3333321110 0 11257778899988877777776433222 22211 01122
Q ss_pred ee-EEEEcCcchhHHHHHHHHhhhccccccCCcceEEEEEecccchhhhHHHHhhhh
Q psy15524 278 KQ-HFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTKK 333 (930)
Q Consensus 278 ~~-~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~ 333 (930)
.+ .++......|..+++..+.. ....+.|+||||+|++.++.++..|+..|
T Consensus 447 d~~d~vy~t~~eK~~al~~~I~~-----~~~~gqpVLVFt~S~e~sE~Ls~~L~~~G 498 (822)
T 3jux_A 447 DHDDLVFRTQKEKYEKIVEEIEK-----RYKKGQPVLVGTTSIEKSELLSSMLKKKG 498 (822)
T ss_dssp ECCCEEESSHHHHHHHHHHHHHH-----HHHHTCCEEEEESSHHHHHHHHHHHHTTT
T ss_pred ecCcEEEecHHHHHHHHHHHHHH-----HhhCCCCEEEEECCHHHHHHHHHHHHHCC
Confidence 22 34556778899999988854 12356799999999999999999998654
|
| >4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=8e-10 Score=129.83 Aligned_cols=71 Identities=21% Similarity=0.202 Sum_probs=60.7
Q ss_pred cCcHHHHHHHHH----hhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHH
Q psy15524 5 QVTTVQQLSIQP----ILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKL 80 (930)
Q Consensus 5 ~l~~~Q~~ai~~----~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~ 80 (930)
+|+|.|.+.+.. +.+|+++++.||||+|||++|++|++..+.. .+.+++|++||++|+.|+.+.+..+
T Consensus 3 ~~R~~Q~~~~~~v~~~l~~~~~~~~~apTGtGKT~a~l~p~l~~~~~--------~~~kvli~t~T~~l~~Qi~~el~~l 74 (620)
T 4a15_A 3 ENRQYQVEAIDFLRSSLQKSYGVALESPTGSGKTIMALKSALQYSSE--------RKLKVLYLVRTNSQEEQVIKELRSL 74 (620)
T ss_dssp --CHHHHHHHHHHHHHHHHSSEEEEECCTTSCHHHHHHHHHHHHHHH--------HTCEEEEEESSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHhhhh--------cCCeEEEECCCHHHHHHHHHHHHHH
Confidence 589999999864 4579999999999999999999999998764 2457999999999999999999888
Q ss_pred hhh
Q psy15524 81 CKS 83 (930)
Q Consensus 81 ~~~ 83 (930)
...
T Consensus 75 ~~~ 77 (620)
T 4a15_A 75 SST 77 (620)
T ss_dssp HHH
T ss_pred hhc
Confidence 653
|
| >1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D* | Back alignment and structure |
|---|
Probab=98.66 E-value=5.2e-08 Score=114.40 Aligned_cols=145 Identities=19% Similarity=0.218 Sum_probs=86.2
Q ss_pred CHHHHHhHHhhhcCCcEEEEccCCCchh--HHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHHHHhhccC
Q psy15524 416 TTVQQLSIQPILDGGDVLVRSQTGSGKT--LAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSF 493 (930)
Q Consensus 416 ~~iQ~~~i~~il~~~d~lv~a~TGsGKT--l~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~ 493 (930)
+++|+.+++.++.++++++.+++||||| ++++++.+..+.. ..+.++++++||.++|.++.+.+.......
T Consensus 151 ~~~Q~~Ai~~~l~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~-------~~~~~vll~APTg~AA~~L~e~~~~~~~~l 223 (608)
T 1w36_D 151 INWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMAD-------GERCRIRLAAPTGKAAARLTESLGKALRQL 223 (608)
T ss_dssp CCHHHHHHHHHHTBSEEEEECCTTSTHHHHHHHHHHHHHHTCS-------SCCCCEEEEBSSHHHHHHHHHHHTHHHHHS
T ss_pred CHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHhhh-------cCCCeEEEEeCChhHHHHHHHHHHHHHhcC
Confidence 7899999999999999999999999999 6667777654321 246789999999999999988877655433
Q ss_pred CCcceEEEeCCCchHHHHHHHhcCC-cEEEECchhHHHhhhccCCcccccceEEEEecchhhhhcCcHHHHHHHHHHHhh
Q psy15524 494 TWIVPSWLTGGEKMKSEKARIRKGI-SILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKK 572 (930)
Q Consensus 494 ~~~~~~~~~gg~~~~~~~~~~~~~~-~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~l~~~g~~~~l~~i~~~l~~ 572 (930)
+... ... .+... . .... .++-.+|+... +.... .....++++|||||+++ + ...+..++..++
T Consensus 224 ~l~~-~~~-~~~~~--~----~~Tih~ll~~~~~~~~--~~~~~-~~~l~~d~lIIDEAsml-~---~~~~~~Ll~~l~- 287 (608)
T 1w36_D 224 PLTD-EQK-KRIPE--D----ASTLHRLLGAQPGSQR--LRHHA-GNPLHLDVLVVDEASMI-D---LPMMSRLIDALP- 287 (608)
T ss_dssp SCCS-CCC-CSCSC--C----CBTTTSCC-------------CT-TSCCSCSEEEECSGGGC-B---HHHHHHHHHTCC-
T ss_pred CCCH-HHH-hccch--h----hhhhHhhhccCCCchH--HHhcc-CCCCCCCEEEEechhhC-C---HHHHHHHHHhCC-
Confidence 2100 000 00000 0 0000 11222333210 11111 11237899999999954 3 344555655553
Q ss_pred cCccceEEEEccc
Q psy15524 573 QKPQFQSILLSAT 585 (930)
Q Consensus 573 ~~~~~q~vl~SAT 585 (930)
...|++++.-.
T Consensus 288 --~~~~liLvGD~ 298 (608)
T 1w36_D 288 --DHARVIFLGDR 298 (608)
T ss_dssp --TTCEEEEEECT
T ss_pred --CCCEEEEEcch
Confidence 47788887543
|
| >1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D* | Back alignment and structure |
|---|
Probab=98.40 E-value=3.7e-07 Score=107.12 Aligned_cols=144 Identities=18% Similarity=0.223 Sum_probs=85.1
Q ss_pred cHHHHHHHHHhhcCCcEEEEcCCCChHH--HHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHHhhhc
Q psy15524 7 TTVQQLSIQPILDGGDVLVRSQTGSGKT--LAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSF 84 (930)
Q Consensus 7 ~~~Q~~ai~~~~~g~~~lv~apTGsGKT--~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~ 84 (930)
++.|+.|++.++.++.+++.||+|+||| ++++++.+..+.. ..+.++++++||..++.++.+.+.......
T Consensus 151 ~~~Q~~Ai~~~l~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~-------~~~~~vll~APTg~AA~~L~e~~~~~~~~l 223 (608)
T 1w36_D 151 INWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMAD-------GERCRIRLAAPTGKAAARLTESLGKALRQL 223 (608)
T ss_dssp CCHHHHHHHHHHTBSEEEEECCTTSTHHHHHHHHHHHHHHTCS-------SCCCCEEEEBSSHHHHHHHHHHHTHHHHHS
T ss_pred CHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHhhh-------cCCCeEEEEeCChhHHHHHHHHHHHHHhcC
Confidence 6899999999999999999999999999 5677777665421 224569999999999999998887766543
Q ss_pred CCceeEEeeCCCchHHHHHHhcCCCc-EEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCcHHHHHHHHHHHhh
Q psy15524 85 TWIVPSWLTGGEKMKSEKARIRKGIS-ILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKK 163 (930)
Q Consensus 85 ~~~~~~~~~g~~~~~~~~~~l~~~~~-Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~~~~~~~i~~~l~~ 163 (930)
+ +..... .+... .....+ ++-.+|+.. .+ .. .......+++|||||+++ ++ .+.+..++..+
T Consensus 224 ~-l~~~~~-~~~~~------~~~Tih~ll~~~~~~~-~~-~~-~~~~~l~~d~lIIDEAsm-l~---~~~~~~Ll~~l-- 286 (608)
T 1w36_D 224 P-LTDEQK-KRIPE------DASTLHRLLGAQPGSQ-RL-RH-HAGNPLHLDVLVVDEASM-ID---LPMMSRLIDAL-- 286 (608)
T ss_dssp S-CCSCCC-CSCSC------CCBTTTSCC--------------CTTSCCSCSEEEECSGGG-CB---HHHHHHHHHTC--
T ss_pred C-CCHHHH-hccch------hhhhhHhhhccCCCch-HH-Hh-ccCCCCCCCEEEEechhh-CC---HHHHHHHHHhC--
Confidence 3 110000 00000 001111 222233221 11 11 111123789999999994 44 34556665544
Q ss_pred cCCCceEEEEEe
Q psy15524 164 QKPQFQSILLSA 175 (930)
Q Consensus 164 ~~~~~~~i~lSA 175 (930)
+...|++++--
T Consensus 287 -~~~~~liLvGD 297 (608)
T 1w36_D 287 -PDHARVIFLGD 297 (608)
T ss_dssp -CTTCEEEEEEC
T ss_pred -CCCCEEEEEcc
Confidence 34456666543
|
| >1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A* | Back alignment and structure |
|---|
Probab=98.25 E-value=2.4e-06 Score=101.28 Aligned_cols=68 Identities=28% Similarity=0.311 Sum_probs=52.8
Q ss_pred CCccCcHHHHHHHHHhhc----CC-cEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHH
Q psy15524 2 NITQVTTVQQLSIQPILD----GG-DVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEI 76 (930)
Q Consensus 2 g~~~l~~~Q~~ai~~~~~----g~-~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~ 76 (930)
|| .|++.|.+++..+.+ |. ..++.+.||||||+++.-.+ .... ..+|||+|+..+|.|+++.
T Consensus 6 ~~-~~~~~q~~ai~~l~~~~~~~~~~~~l~g~tgs~kt~~~a~~~-~~~~-----------~~~lvv~~~~~~A~ql~~e 72 (664)
T 1c4o_A 6 GP-SPKGDQPKAIAGLVEALRDGERFVTLLGATGTGKTVTMAKVI-EALG-----------RPALVLAPNKILAAQLAAE 72 (664)
T ss_dssp SC-CCCTTHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHH-HHHT-----------CCEEEEESSHHHHHHHHHH
T ss_pred CC-CCCCCChHHHHHHHHHHhcCCCcEEEEcCCCcHHHHHHHHHH-HHhC-----------CCEEEEecCHHHHHHHHHH
Confidence 56 799999999987653 33 46788999999999755333 3321 1299999999999999999
Q ss_pred HHHHhh
Q psy15524 77 FTKLCK 82 (930)
Q Consensus 77 ~~~~~~ 82 (930)
|+.++.
T Consensus 73 l~~~~~ 78 (664)
T 1c4o_A 73 FRELFP 78 (664)
T ss_dssp HHHHCT
T ss_pred HHHHCC
Confidence 999964
|
| >2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B* | Back alignment and structure |
|---|
Probab=98.07 E-value=1.9e-05 Score=93.48 Aligned_cols=66 Identities=23% Similarity=0.284 Sum_probs=50.3
Q ss_pred cCcHHHHHHHHHhhc----CC-cEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHH
Q psy15524 5 QVTTVQQLSIQPILD----GG-DVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTK 79 (930)
Q Consensus 5 ~l~~~Q~~ai~~~~~----g~-~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~ 79 (930)
.|+..|..++..+.+ |. ..++.+.||||||++..-.+ .... ..+|||+|+..+|.|+++.|+.
T Consensus 12 ~p~~~Q~~~i~~l~~~~~~~~~~~~l~g~~gs~k~~~~a~~~-~~~~-----------~~~lvv~~~~~~A~~l~~el~~ 79 (661)
T 2d7d_A 12 QPQGDQPKAIEKLVKGIQEGKKHQTLLGATGTGKTFTVSNLI-KEVN-----------KPTLVIAHNKTLAGQLYSEFKE 79 (661)
T ss_dssp CCCTTHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHH-HHHC-----------CCEEEECSSHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHhcCCCcEEEECcCCcHHHHHHHHHH-HHhC-----------CCEEEEECCHHHHHHHHHHHHH
Confidence 588999999886553 43 47788999999998654322 2221 1289999999999999999999
Q ss_pred Hhh
Q psy15524 80 LCK 82 (930)
Q Consensus 80 ~~~ 82 (930)
++.
T Consensus 80 ~~~ 82 (661)
T 2d7d_A 80 FFP 82 (661)
T ss_dssp HCT
T ss_pred HcC
Confidence 964
|
| >4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A | Back alignment and structure |
|---|
Probab=97.77 E-value=7.8e-05 Score=88.50 Aligned_cols=67 Identities=18% Similarity=0.223 Sum_probs=53.5
Q ss_pred CCCHHHHHhHHhhhcCCc-EEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHHHHh
Q psy15524 414 QVTTVQQLSIQPILDGGD-VLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKL 489 (930)
Q Consensus 414 ~~~~iQ~~~i~~il~~~d-~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~ 489 (930)
.+++-|.+|+..++..++ .+|+||.|||||.+..- ++..+.. .+.++|+++||..-+.++.+.+...
T Consensus 189 ~LN~~Q~~AV~~al~~~~~~lI~GPPGTGKT~ti~~-~I~~l~~--------~~~~ILv~a~TN~AvD~i~erL~~~ 256 (646)
T 4b3f_X 189 CLDTSQKEAVLFALSQKELAIIHGPPGTGKTTTVVE-IILQAVK--------QGLKVLCCAPSNIAVDNLVERLALC 256 (646)
T ss_dssp TCCHHHHHHHHHHHHCSSEEEEECCTTSCHHHHHHH-HHHHHHH--------TTCCEEEEESSHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHhcCCCceEEECCCCCCHHHHHHH-HHHHHHh--------CCCeEEEEcCchHHHHHHHHHHHhc
Confidence 577889999999998877 78999999999988444 3333433 2568999999999999998887654
|
| >3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4} | Back alignment and structure |
|---|
Probab=97.74 E-value=0.00012 Score=83.14 Aligned_cols=69 Identities=17% Similarity=0.206 Sum_probs=52.0
Q ss_pred CCCCCCCHHHHHhHHhhhcC----C-cEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHH
Q psy15524 410 MNITQVTTVQQLSIQPILDG----G-DVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLE 484 (930)
Q Consensus 410 ~~~~~~~~iQ~~~i~~il~~----~-d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~ 484 (930)
+.|..+++-|++++..++.. + .+++.|+.|||||.+ +..++..+... ....+++++||...|..+.+
T Consensus 21 ~~~~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~l-l~~~~~~l~~~-------~~~~il~~a~T~~Aa~~l~~ 92 (459)
T 3upu_A 21 MTFDDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTL-TKFIIEALIST-------GETGIILAAPTHAAKKILSK 92 (459)
T ss_dssp CCSSCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHH-HHHHHHHHHHT-------TCCCEEEEESSHHHHHHHHH
T ss_pred CccccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHH-HHHHHHHHHhc-------CCceEEEecCcHHHHHHHHh
Confidence 67888999999999887643 3 799999999999975 44555555541 12468999999988876665
Q ss_pred HH
Q psy15524 485 IF 486 (930)
Q Consensus 485 ~~ 486 (930)
.+
T Consensus 93 ~~ 94 (459)
T 3upu_A 93 LS 94 (459)
T ss_dssp HH
T ss_pred hh
Confidence 44
|
| >2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A | Back alignment and structure |
|---|
Probab=97.72 E-value=0.00022 Score=84.10 Aligned_cols=70 Identities=17% Similarity=0.253 Sum_probs=55.7
Q ss_pred CCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHHHHh
Q psy15524 412 ITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKL 489 (930)
Q Consensus 412 ~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~ 489 (930)
+..+++.|.+|+..++.+.-.++.||+|+|||.+. ..++..+.. ..+.++++++||...+.++.+.+.+.
T Consensus 178 ~~~ln~~Q~~av~~~l~~~~~li~GppGTGKT~~~-~~~i~~l~~-------~~~~~ilv~a~tn~A~~~l~~~l~~~ 247 (624)
T 2gk6_A 178 LPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTS-ATIVYHLAR-------QGNGPVLVCAPSNIAVDQLTEKIHQT 247 (624)
T ss_dssp SCCCCHHHHHHHHHHHTCSEEEEECCTTSCHHHHH-HHHHHHHHT-------SSSCCEEEEESSHHHHHHHHHHHHTT
T ss_pred cCCCCHHHHHHHHHHhcCCCeEEECCCCCCHHHHH-HHHHHHHHH-------cCCCeEEEEeCcHHHHHHHHHHHHhc
Confidence 34678899999999887777899999999999873 444444443 24668999999999999999887654
|
| >3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A* | Back alignment and structure |
|---|
Probab=97.69 E-value=9.9e-05 Score=85.56 Aligned_cols=64 Identities=16% Similarity=0.178 Sum_probs=51.0
Q ss_pred CCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHH
Q psy15524 414 QVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIF 486 (930)
Q Consensus 414 ~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~ 486 (930)
.+++.|.+++..++.++.+++.++.|+|||.+ +..++..+.. .+.++++++||...+.++.+..
T Consensus 189 ~L~~~Q~~Av~~~~~~~~~~I~G~pGTGKTt~-i~~l~~~l~~--------~g~~Vl~~ApT~~Aa~~L~e~~ 252 (574)
T 3e1s_A 189 GLSEEQASVLDQLAGHRLVVLTGGPGTGKSTT-TKAVADLAES--------LGLEVGLCAPTGKAARRLGEVT 252 (574)
T ss_dssp TCCHHHHHHHHHHTTCSEEEEECCTTSCHHHH-HHHHHHHHHH--------TTCCEEEEESSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhCCEEEEEcCCCCCHHHH-HHHHHHHHHh--------cCCeEEEecCcHHHHHHhHhhh
Confidence 56788999999999888899999999999976 4445544443 3677999999999988776543
|
| >4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A | Back alignment and structure |
|---|
Probab=97.69 E-value=7e-05 Score=88.89 Aligned_cols=68 Identities=19% Similarity=0.252 Sum_probs=54.6
Q ss_pred ccCcHHHHHHHHHhhcCCc-EEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHH
Q psy15524 4 TQVTTVQQLSIQPILDGGD-VLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKL 80 (930)
Q Consensus 4 ~~l~~~Q~~ai~~~~~g~~-~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~ 80 (930)
..|++.|++|+..++..++ .||+||.|+|||.+..-.+.+.+.. +.++|+++||..=+.++.+++...
T Consensus 188 ~~LN~~Q~~AV~~al~~~~~~lI~GPPGTGKT~ti~~~I~~l~~~---------~~~ILv~a~TN~AvD~i~erL~~~ 256 (646)
T 4b3f_X 188 TCLDTSQKEAVLFALSQKELAIIHGPPGTGKTTTVVEIILQAVKQ---------GLKVLCCAPSNIAVDNLVERLALC 256 (646)
T ss_dssp TTCCHHHHHHHHHHHHCSSEEEEECCTTSCHHHHHHHHHHHHHHT---------TCCEEEEESSHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHhcCCCceEEECCCCCCHHHHHHHHHHHHHhC---------CCeEEEEcCchHHHHHHHHHHHhc
Confidence 3589999999999987665 7999999999998855555444432 456999999999999999888654
|
| >3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4} | Back alignment and structure |
|---|
Probab=97.56 E-value=0.00034 Score=79.24 Aligned_cols=69 Identities=17% Similarity=0.188 Sum_probs=50.8
Q ss_pred CCCccCcHHHHHHHHHhhcC----C-cEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHH
Q psy15524 1 MNITQVTTVQQLSIQPILDG----G-DVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLE 75 (930)
Q Consensus 1 ~g~~~l~~~Q~~ai~~~~~g----~-~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~ 75 (930)
+.|..|++-|++|+..++.. . .+++.||.|+|||.+. ..++..+.... ...+++++||...+..+.+
T Consensus 21 ~~~~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll-~~~~~~l~~~~-------~~~il~~a~T~~Aa~~l~~ 92 (459)
T 3upu_A 21 MTFDDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLT-KFIIEALISTG-------ETGIILAAPTHAAKKILSK 92 (459)
T ss_dssp CCSSCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHH-HHHHHHHHHTT-------CCCEEEEESSHHHHHHHHH
T ss_pred CccccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHH-HHHHHHHHhcC-------CceEEEecCcHHHHHHHHh
Confidence 45788999999999976532 3 8999999999999754 34444554321 1248999999998877665
Q ss_pred HH
Q psy15524 76 IF 77 (930)
Q Consensus 76 ~~ 77 (930)
.+
T Consensus 93 ~~ 94 (459)
T 3upu_A 93 LS 94 (459)
T ss_dssp HH
T ss_pred hh
Confidence 54
|
| >2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A | Back alignment and structure |
|---|
Probab=97.54 E-value=0.00044 Score=81.48 Aligned_cols=69 Identities=19% Similarity=0.255 Sum_probs=54.9
Q ss_pred ccCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHH
Q psy15524 4 TQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKL 80 (930)
Q Consensus 4 ~~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~ 80 (930)
..+++.|.+|+..++.+.-++|.||+|+|||.+... ++..+.. ..+.++|+++||..-+.++.+++.+.
T Consensus 179 ~~ln~~Q~~av~~~l~~~~~li~GppGTGKT~~~~~-~i~~l~~-------~~~~~ilv~a~tn~A~~~l~~~l~~~ 247 (624)
T 2gk6_A 179 PDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSAT-IVYHLAR-------QGNGPVLVCAPSNIAVDQLTEKIHQT 247 (624)
T ss_dssp CCCCHHHHHHHHHHHTCSEEEEECCTTSCHHHHHHH-HHHHHHT-------SSSCCEEEEESSHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHhcCCCeEEECCCCCCHHHHHHH-HHHHHHH-------cCCCeEEEEeCcHHHHHHHHHHHHhc
Confidence 468999999999998877899999999999987543 3344432 12456999999999999999888654
|
| >2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A | Back alignment and structure |
|---|
Probab=97.52 E-value=0.00047 Score=82.91 Aligned_cols=70 Identities=17% Similarity=0.267 Sum_probs=56.0
Q ss_pred CCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHHHHh
Q psy15524 412 ITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKL 489 (930)
Q Consensus 412 ~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~ 489 (930)
...+++.|.+|+..++.+.-.++.||.|+|||.+ +..++..+.. ..+.++++++||...+.++.+.+.+.
T Consensus 354 ~~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~t-i~~~i~~l~~-------~~~~~ilv~a~tn~A~~~l~~~l~~~ 423 (800)
T 2wjy_A 354 LPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVT-SATIVYHLAR-------QGNGPVLVCAPSNIAVDQLTEKIHQT 423 (800)
T ss_dssp SCCCCHHHHHHHHHHHTSSEEEEECCTTSCHHHH-HHHHHHHHHT-------TCSSCEEEEESSHHHHHHHHHHHHTT
T ss_pred ccCCCHHHHHHHHHhccCCeEEEEcCCCCCHHHH-HHHHHHHHHH-------cCCCcEEEEcCcHHHHHHHHHHHHHh
Confidence 4467899999999998877789999999999987 4445555543 13668999999999999998887654
|
| >2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.47 E-value=0.00079 Score=81.06 Aligned_cols=70 Identities=17% Similarity=0.261 Sum_probs=55.7
Q ss_pred CCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHHHHh
Q psy15524 412 ITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKL 489 (930)
Q Consensus 412 ~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~ 489 (930)
+..+++.|.+|+..++.+.-.+|.||.|||||.+. ..++..+... .+.++++++||...+.++.+.+.+.
T Consensus 358 ~~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~~i-~~~i~~l~~~-------~~~~ILv~a~tn~A~d~l~~rL~~~ 427 (802)
T 2xzl_A 358 FAQLNSSQSNAVSHVLQRPLSLIQGPPGTGKTVTS-ATIVYHLSKI-------HKDRILVCAPSNVAVDHLAAKLRDL 427 (802)
T ss_dssp SCCCCHHHHHHHHHHTTCSEEEEECSTTSSHHHHH-HHHHHHHHHH-------HCCCEEEEESSHHHHHHHHHHHHHT
T ss_pred cccCCHHHHHHHHHHhcCCCEEEECCCCCCHHHHH-HHHHHHHHhC-------CCCeEEEEcCcHHHHHHHHHHHHhh
Confidence 45688999999999987767899999999999874 3344444331 2567999999999999999988765
|
| >2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.45 E-value=0.00075 Score=81.30 Aligned_cols=70 Identities=17% Similarity=0.242 Sum_probs=55.4
Q ss_pred CccCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHH
Q psy15524 3 ITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKL 80 (930)
Q Consensus 3 ~~~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~ 80 (930)
+..|++.|++|+..++.+.-++|.||.|+|||.+..--+ ..+... .+.++|+++||..-+.++.+++.+.
T Consensus 358 ~~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~~i~~~i-~~l~~~-------~~~~ILv~a~tn~A~d~l~~rL~~~ 427 (802)
T 2xzl_A 358 FAQLNSSQSNAVSHVLQRPLSLIQGPPGTGKTVTSATIV-YHLSKI-------HKDRILVCAPSNVAVDHLAAKLRDL 427 (802)
T ss_dssp SCCCCHHHHHHHHHHTTCSEEEEECSTTSSHHHHHHHHH-HHHHHH-------HCCCEEEEESSHHHHHHHHHHHHHT
T ss_pred cccCCHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHH-HHHHhC-------CCCeEEEEcCcHHHHHHHHHHHHhh
Confidence 346899999999999887779999999999998754433 333321 1345999999999999999998775
|
| >3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A* | Back alignment and structure |
|---|
Probab=97.37 E-value=0.00086 Score=77.68 Aligned_cols=63 Identities=16% Similarity=0.179 Sum_probs=49.6
Q ss_pred cCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHH
Q psy15524 5 QVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEI 76 (930)
Q Consensus 5 ~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~ 76 (930)
.+++.|++|+..++.+..+++.+|.|+|||... ..++..+.. .+.++++++||...+..+.+.
T Consensus 189 ~L~~~Q~~Av~~~~~~~~~~I~G~pGTGKTt~i-~~l~~~l~~--------~g~~Vl~~ApT~~Aa~~L~e~ 251 (574)
T 3e1s_A 189 GLSEEQASVLDQLAGHRLVVLTGGPGTGKSTTT-KAVADLAES--------LGLEVGLCAPTGKAARRLGEV 251 (574)
T ss_dssp TCCHHHHHHHHHHTTCSEEEEECCTTSCHHHHH-HHHHHHHHH--------TTCCEEEEESSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhCCEEEEEcCCCCCHHHHH-HHHHHHHHh--------cCCeEEEecCcHHHHHHhHhh
Confidence 589999999999999899999999999999763 334444433 245599999999988876654
|
| >2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A | Back alignment and structure |
|---|
Probab=97.32 E-value=0.00099 Score=80.14 Aligned_cols=69 Identities=19% Similarity=0.246 Sum_probs=54.7
Q ss_pred ccCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHH
Q psy15524 4 TQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKL 80 (930)
Q Consensus 4 ~~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~ 80 (930)
..+++.|.+|+..++.+.-++|.||+|+|||.+.. .++..+... .+.++++++||..-+.++.+++.+.
T Consensus 355 ~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~ti~-~~i~~l~~~-------~~~~ilv~a~tn~A~~~l~~~l~~~ 423 (800)
T 2wjy_A 355 PDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSA-TIVYHLARQ-------GNGPVLVCAPSNIAVDQLTEKIHQT 423 (800)
T ss_dssp CCCCHHHHHHHHHHHTSSEEEEECCTTSCHHHHHH-HHHHHHHTT-------CSSCEEEEESSHHHHHHHHHHHHTT
T ss_pred cCCCHHHHHHHHHhccCCeEEEEcCCCCCHHHHHH-HHHHHHHHc-------CCCcEEEEcCcHHHHHHHHHHHHHh
Confidence 46899999999999888789999999999998744 334444331 2456999999999999998887654
|
| >2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A* | Back alignment and structure |
|---|
Probab=97.10 E-value=0.003 Score=68.64 Aligned_cols=74 Identities=12% Similarity=0.043 Sum_probs=59.7
Q ss_pred cCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHHhhhc
Q psy15524 5 QVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSF 84 (930)
Q Consensus 5 ~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~ 84 (930)
.|+|+|+..+..+...+-+++..+-+.|||.+....++..+.. .++..+++++|+.+-|..+++.++.+....
T Consensus 163 ~L~p~Qk~il~~l~~~R~~vi~~sRq~GKT~l~a~~~l~~a~~-------~~g~~v~~vA~t~~qA~~vf~~i~~mi~~~ 235 (385)
T 2o0j_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCF-------NKDKAVGILAHKGSMSAEVLDRTKQAIELL 235 (385)
T ss_dssp CCCHHHHHHHHHHHHSSEEEEEECSSSCHHHHHHHHHHHHHHS-------SSSCEEEEEESSHHHHHHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHhhccCcEEEEEEcCcCChhHHHHHHHHHHHHh-------CCCCeEEEEeCCHHHHHHHHHHHHHHHHhC
Confidence 5899999999877555668999999999999877766654433 235679999999999999999888887655
Q ss_pred C
Q psy15524 85 T 85 (930)
Q Consensus 85 ~ 85 (930)
+
T Consensus 236 P 236 (385)
T 2o0j_A 236 P 236 (385)
T ss_dssp C
T ss_pred h
Confidence 4
|
| >2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A* | Back alignment and structure |
|---|
Probab=96.90 E-value=0.0031 Score=68.61 Aligned_cols=74 Identities=12% Similarity=0.043 Sum_probs=58.2
Q ss_pred CCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHHHHhhccC
Q psy15524 414 QVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSF 493 (930)
Q Consensus 414 ~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~ 493 (930)
.++|+|...+..+...+-+++..+-+.|||.+....++..+.. .++..+++++||++-|..+++.+..+....
T Consensus 163 ~L~p~Qk~il~~l~~~R~~vi~~sRq~GKT~l~a~~~l~~a~~-------~~g~~v~~vA~t~~qA~~vf~~i~~mi~~~ 235 (385)
T 2o0j_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCF-------NKDKAVGILAHKGSMSAEVLDRTKQAIELL 235 (385)
T ss_dssp CCCHHHHHHHHHHHHSSEEEEEECSSSCHHHHHHHHHHHHHHS-------SSSCEEEEEESSHHHHHHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHhhccCcEEEEEEcCcCChhHHHHHHHHHHHHh-------CCCCeEEEEeCCHHHHHHHHHHHHHHHHhC
Confidence 6899999999876555668999999999999866655544432 346789999999999999988888777654
Q ss_pred C
Q psy15524 494 T 494 (930)
Q Consensus 494 ~ 494 (930)
+
T Consensus 236 P 236 (385)
T 2o0j_A 236 P 236 (385)
T ss_dssp C
T ss_pred h
Confidence 4
|
| >3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A* | Back alignment and structure |
|---|
Probab=96.49 E-value=0.0099 Score=69.40 Aligned_cols=74 Identities=12% Similarity=0.043 Sum_probs=59.9
Q ss_pred cCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHHhhhc
Q psy15524 5 QVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSF 84 (930)
Q Consensus 5 ~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~ 84 (930)
.|+|+|+..+..+...+..++..+-|+|||.+....++..+.. .++..+++++|+.+.+..+++.++.+....
T Consensus 163 ~l~p~Q~~i~~~l~~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~-------~~~~~i~~va~t~~qA~~~~~~i~~~i~~~ 235 (592)
T 3cpe_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCF-------NKDKAVGILAHKGSMSAEVLDRTKQAIELL 235 (592)
T ss_dssp CCCHHHHHHHHHHHHCSEEEEEECSSSCHHHHHHHHHHHHHHT-------SSSCEEEEEESSHHHHHHHHHHHHHHHTTS
T ss_pred cCCHHHHHHHHhhccccEEEEEEcCccChHHHHHHHHHHHHHh-------CCCCeEEEEECCHHHHHHHHHHHHHHHHhC
Confidence 4899999999877556779999999999999877665555543 235579999999999999999898887765
Q ss_pred C
Q psy15524 85 T 85 (930)
Q Consensus 85 ~ 85 (930)
+
T Consensus 236 p 236 (592)
T 3cpe_A 236 P 236 (592)
T ss_dssp C
T ss_pred h
Confidence 4
|
| >3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A* | Back alignment and structure |
|---|
Probab=96.46 E-value=0.008 Score=70.21 Aligned_cols=74 Identities=12% Similarity=0.043 Sum_probs=58.8
Q ss_pred CCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHHHHhhccC
Q psy15524 414 QVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSF 493 (930)
Q Consensus 414 ~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~ 493 (930)
.++|+|...+..+-..+-+++..+-|+|||.+...-++..+.. .++..+++++|+++.|..+++.++.+....
T Consensus 163 ~l~p~Q~~i~~~l~~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~-------~~~~~i~~va~t~~qA~~~~~~i~~~i~~~ 235 (592)
T 3cpe_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCF-------NKDKAVGILAHKGSMSAEVLDRTKQAIELL 235 (592)
T ss_dssp CCCHHHHHHHHHHHHCSEEEEEECSSSCHHHHHHHHHHHHHHT-------SSSCEEEEEESSHHHHHHHHHHHHHHHTTS
T ss_pred cCCHHHHHHHHhhccccEEEEEEcCccChHHHHHHHHHHHHHh-------CCCCeEEEEECCHHHHHHHHHHHHHHHHhC
Confidence 5899999999877556779999999999999866555544432 346689999999999999998888887655
Q ss_pred C
Q psy15524 494 T 494 (930)
Q Consensus 494 ~ 494 (930)
+
T Consensus 236 p 236 (592)
T 3cpe_A 236 P 236 (592)
T ss_dssp C
T ss_pred h
Confidence 4
|
| >2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.42 E-value=0.0029 Score=62.06 Aligned_cols=69 Identities=13% Similarity=0.043 Sum_probs=43.8
Q ss_pred hccccCCeeeccCCcccccCCCcccccCCCceeEEEEcCcchhHHHHHHHHhhhccccccCCcceEEEEEecccchhhhH
Q psy15524 247 GMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHT 326 (930)
Q Consensus 247 ~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~iVF~~s~~~~~~l~ 326 (930)
..|+.+|..+.+.... ..+.++.+.+..++...|...|..++.. .+.++||||+++..++.++
T Consensus 9 ~~~~~~p~~i~v~~~~---------~~~~~i~q~~~~~~~~~K~~~L~~~l~~--------~~~~~lVF~~~~~~~~~l~ 71 (191)
T 2p6n_A 9 SGVDLGTENLYFQSMG---------AASLDVIQEVEYVKEEAKMVYLLECLQK--------TPPPVLIFAEKKADVDAIH 71 (191)
T ss_dssp ----------------------------CCSEEEEEECCGGGHHHHHHHHHTT--------SCSCEEEECSCHHHHHHHH
T ss_pred ccccCCCEEEEECCCC---------CCCcCceEEEEEcChHHHHHHHHHHHHh--------CCCCEEEEECCHHHHHHHH
Confidence 3567788777665443 2357899999999999999999999832 3468999999999999999
Q ss_pred HHHhhh
Q psy15524 327 ELLSTK 332 (930)
Q Consensus 327 ~~L~~~ 332 (930)
..|+..
T Consensus 72 ~~L~~~ 77 (191)
T 2p6n_A 72 EYLLLK 77 (191)
T ss_dssp HHHHHH
T ss_pred HHHHHc
Confidence 999764
|
| >3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A | Back alignment and structure |
|---|
Probab=96.36 E-value=0.015 Score=60.84 Aligned_cols=124 Identities=9% Similarity=0.068 Sum_probs=84.6
Q ss_pred chhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHHHHHHHHHHhhcCCCcE
Q psy15524 634 PKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSVKSGV 713 (930)
Q Consensus 634 ~~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~v~~~F~~~~~~v 713 (930)
...|+..|..++..... .+.+++||+......+.+..++.. +++.+..+.|.....++. . .++...+
T Consensus 107 ~SGKf~~L~~LL~~l~~-----~~~kVLIfsq~t~~LDilE~~l~~---~~~~y~RlDG~~~~~~~k-~----~~~~~~i 173 (328)
T 3hgt_A 107 NSGKFSVLRDLINLVQE-----YETETAIVCRPGRTMDLLEALLLG---NKVHIKRYDGHSIKSAAA-A----NDFSCTV 173 (328)
T ss_dssp TCHHHHHHHHHHHHHTT-----SCEEEEEEECSTHHHHHHHHHHTT---SSCEEEESSSCCC------------CCSEEE
T ss_pred cCccHHHHHHHHHHHHh-----CCCEEEEEECChhHHHHHHHHHhc---CCCceEeCCCCchhhhhh-c----ccCCceE
Confidence 56788888877766533 278999999999999999888875 489999999986543221 1 2344455
Q ss_pred EEeccccccccC-----CCCccEEEEecCCCChhhH-HhhhcccccCC----CCceEEEEeCcccHH
Q psy15524 714 LICTDVAARGLD-----LPLVDWIVQYTAPSSSTDY-VHRVGRTARVG----HEGSSLLFLIPSEVK 770 (930)
Q Consensus 714 Lv~T~~~~~GlD-----ip~v~~VI~~~~p~s~~~y-~qr~GRagR~g----~~g~~~~~~~~~e~~ 770 (930)
.+.|...+-|+| +...+.||-||..+++..- +|.+-|+.|.| +.-..+-+++....+
T Consensus 174 ~Lltsag~~gin~~~~nl~~aD~VI~~DsdwNp~~d~iQa~~r~~R~~~gq~k~v~V~RLvt~~TiE 240 (328)
T 3hgt_A 174 HLFSSEGINFTKYPIKSKARFDMLICLDTTVDTSQKDIQYLLQYKRERKGLERYAPIVRLVAINSID 240 (328)
T ss_dssp EEEESSCCCTTTSCCCCCSCCSEEEECSTTCCTTSHHHHHHHCCC---------CCEEEEEETTSHH
T ss_pred EEEECCCCCCcCcccccCCCCCEEEEECCCCCCCChHHHHHHHHhhhccCCCCcceEEEEeCCCCHH
Confidence 455666666676 6789999999999998875 89888888863 344566666655443
|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* | Back alignment and structure |
|---|
Probab=95.89 E-value=0.06 Score=51.88 Aligned_cols=32 Identities=22% Similarity=0.264 Sum_probs=25.6
Q ss_pred cHHHHHHHHHhh---------cCCcEEEEcCCCChHHHHHH
Q psy15524 7 TTVQQLSIQPIL---------DGGDVLVRSQTGSGKTLAYA 38 (930)
Q Consensus 7 ~~~Q~~ai~~~~---------~g~~~lv~apTGsGKT~~~~ 38 (930)
.+.|++++..+. .|+.+++.+|+|+|||....
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~ 56 (180)
T 3ec2_A 16 NVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAV 56 (180)
T ss_dssp SHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHH
Confidence 567888887654 46789999999999998644
|
| >2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=95.84 E-value=0.019 Score=53.54 Aligned_cols=43 Identities=12% Similarity=0.221 Sum_probs=25.4
Q ss_pred ccceEEEEecchhhhhcCcHHHHHHHHHHHhhcCccceEEEEcccc
Q psy15524 541 SKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATL 586 (930)
Q Consensus 541 ~~l~~lVlDEah~l~~~g~~~~l~~i~~~l~~~~~~~q~vl~SAT~ 586 (930)
.+.+++|+||++.+.+.. ...+..+++.+... ...++++|...
T Consensus 82 ~~~~lLilDE~~~~~~~~-~~~l~~li~~~~~~--g~~~iiits~~ 124 (149)
T 2kjq_A 82 FEAEYLAVDQVEKLGNEE-QALLFSIFNRFRNS--GKGFLLLGSEY 124 (149)
T ss_dssp GGCSEEEEESTTCCCSHH-HHHHHHHHHHHHHH--TCCEEEEEESS
T ss_pred hCCCEEEEeCccccChHH-HHHHHHHHHHHHHc--CCcEEEEECCC
Confidence 356899999999865443 55555666555432 23324445553
|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* | Back alignment and structure |
|---|
Probab=95.58 E-value=0.076 Score=51.11 Aligned_cols=18 Identities=28% Similarity=0.416 Sum_probs=15.8
Q ss_pred cCCcEEEEccCCCchhHH
Q psy15524 428 DGGDVLVRSQTGSGKTLA 445 (930)
Q Consensus 428 ~~~d~lv~a~TGsGKTl~ 445 (930)
.|+.+++.+|+|+|||..
T Consensus 37 ~g~~~~l~G~~G~GKTtL 54 (180)
T 3ec2_A 37 EGKGLTFVGSPGVGKTHL 54 (180)
T ss_dssp GCCEEEECCSSSSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 367899999999999975
|
| >3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A* | Back alignment and structure |
|---|
Probab=95.47 E-value=0.023 Score=67.48 Aligned_cols=72 Identities=17% Similarity=0.116 Sum_probs=54.7
Q ss_pred CCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHHHHhhc
Q psy15524 413 TQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCK 491 (930)
Q Consensus 413 ~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~ 491 (930)
..+++-|.+++.. .+..++|.|+.|||||.+..--+...+.... .+..++|++++|+..+.++.+.+.+...
T Consensus 8 ~~Ln~~Q~~av~~--~~~~~lV~a~aGsGKT~~l~~ri~~l~~~~~-----~~~~~iL~ltft~~aa~e~~~rl~~~~~ 79 (647)
T 3lfu_A 8 DSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVEN-----CSPYSIMAVTFTNKAAAEMRHRIGQLMG 79 (647)
T ss_dssp TTCCHHHHHHHTC--CSSCEEEEECTTSCHHHHHHHHHHHHHHTSC-----CCGGGEEEEESSHHHHHHHHHHHHHHHC
T ss_pred hcCCHHHHHHHhC--CCCCEEEEECCCCCHHHHHHHHHHHHHHhCC-----CChhhEEEEeccHHHHHHHHHHHHHHhc
Confidence 3689999999973 3567999999999999985544444443211 1235799999999999999999988754
|
| >3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A* | Back alignment and structure |
|---|
Probab=95.46 E-value=0.025 Score=67.11 Aligned_cols=71 Identities=17% Similarity=0.123 Sum_probs=55.7
Q ss_pred ccCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHHh
Q psy15524 4 TQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLC 81 (930)
Q Consensus 4 ~~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~ 81 (930)
..|++.|++|+.. .+..++|.|+.|||||.+.+.-+...+.... .+..++|++++|+..+.++.+++.+..
T Consensus 8 ~~Ln~~Q~~av~~--~~~~~lV~a~aGsGKT~~l~~ri~~l~~~~~-----~~~~~iL~ltft~~aa~e~~~rl~~~~ 78 (647)
T 3lfu_A 8 DSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVEN-----CSPYSIMAVTFTNKAAAEMRHRIGQLM 78 (647)
T ss_dssp TTCCHHHHHHHTC--CSSCEEEEECTTSCHHHHHHHHHHHHHHTSC-----CCGGGEEEEESSHHHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHhC--CCCCEEEEECCCCCHHHHHHHHHHHHHHhCC-----CChhhEEEEeccHHHHHHHHHHHHHHh
Confidence 4699999999973 3557999999999999986666655554311 123459999999999999999998875
|
| >1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=95.44 E-value=0.011 Score=56.77 Aligned_cols=52 Identities=13% Similarity=0.131 Sum_probs=44.3
Q ss_pred CCCceeEEEEcCcchhHHHHHHHHhhhccccccCCcceEEEEEecccchhhhHHHHhhh
Q psy15524 274 PDSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTK 332 (930)
Q Consensus 274 ~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~ 332 (930)
+.++.|+|..++...|...|..++. .....++||||+++..++.++..|...
T Consensus 3 ~~~i~q~~~~~~~~~K~~~L~~ll~-------~~~~~~~lVF~~~~~~~~~l~~~L~~~ 54 (172)
T 1t5i_A 3 LHGLQQYYVKLKDNEKNRKLFDLLD-------VLEFNQVVIFVKSVQRCIALAQLLVEQ 54 (172)
T ss_dssp --CCEEEEEECCGGGHHHHHHHHHH-------HSCCSSEEEECSSHHHHHHHHHHHHHT
T ss_pred cCCeEEEEEECChHHHHHHHHHHHH-------hCCCCcEEEEECCHHHHHHHHHHHHhc
Confidence 4679999999999999999999994 335679999999999999999999765
|
| >2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=95.43 E-value=0.01 Score=56.34 Aligned_cols=53 Identities=11% Similarity=0.242 Sum_probs=46.0
Q ss_pred cCCCceeEEEEcCcchhHHHHHHHHhhhccccccCCcceEEEEEecccchhhhHHHHhhh
Q psy15524 273 IPDSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTK 332 (930)
Q Consensus 273 ~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~ 332 (930)
.+.++.|.+..++...|...|..++.. ..+.++||||++++.++.++..|...
T Consensus 6 ~~~~i~~~~~~~~~~~K~~~L~~ll~~-------~~~~~~lVF~~~~~~~~~l~~~L~~~ 58 (163)
T 2hjv_A 6 TTRNIEHAVIQVREENKFSLLKDVLMT-------ENPDSCIIFCRTKEHVNQLTDELDDL 58 (163)
T ss_dssp CCCCEEEEEEECCGGGHHHHHHHHHHH-------HCCSSEEEECSSHHHHHHHHHHHHHT
T ss_pred CcccceEEEEECChHHHHHHHHHHHHh-------cCCCcEEEEECCHHHHHHHHHHHHHc
Confidence 356799999999999999999999943 35679999999999999999999764
|
| >2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.34 E-value=0.016 Score=55.85 Aligned_cols=53 Identities=13% Similarity=0.234 Sum_probs=45.0
Q ss_pred cCCCceeEEEEcCcch-hHHHHHHHHhhhccccccCCcceEEEEEecccchhhhHHHHhhh
Q psy15524 273 IPDSLKQHFIVTPPKL-RLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTK 332 (930)
Q Consensus 273 ~~~~i~~~~~~~~~~~-k~~~l~~~l~~~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~ 332 (930)
.+.++.|+|+.++... |...|..++ ......++||||+++..++.++..|...
T Consensus 4 ~~~~i~q~~~~~~~~~~K~~~L~~ll-------~~~~~~~~lVF~~~~~~~~~l~~~L~~~ 57 (175)
T 2rb4_A 4 TLNNIRQYYVLCEHRKDKYQALCNIY-------GSITIGQAIIFCQTRRNAKWLTVEMIQD 57 (175)
T ss_dssp CBCCEEEEEEECSSHHHHHHHHHHHH-------TTSCCSEEEEECSCHHHHHHHHHHHHTT
T ss_pred ccCCceEEEEEcCChHhHHHHHHHHH-------HhCCCCCEEEEECCHHHHHHHHHHHHHc
Confidence 3578999999998765 999999988 3345679999999999999999999864
|
| >3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.32 E-value=0.11 Score=54.85 Aligned_cols=43 Identities=9% Similarity=0.267 Sum_probs=27.0
Q ss_pred cceEEEEecchhhhhcCcHHHHHHHHHHHhhcCccceEEEEccccC
Q psy15524 542 KVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLT 587 (930)
Q Consensus 542 ~l~~lVlDEah~l~~~g~~~~l~~i~~~l~~~~~~~q~vl~SAT~~ 587 (930)
..-++++||+|.+. + ...+..+++.........-+++.++|+.
T Consensus 132 ~~~ii~lDE~d~l~--~-q~~L~~l~~~~~~~~s~~~vI~i~n~~d 174 (318)
T 3te6_A 132 RKTLILIQNPENLL--S-EKILQYFEKWISSKNSKLSIICVGGHNV 174 (318)
T ss_dssp CEEEEEEECCSSSC--C-THHHHHHHHHHHCSSCCEEEEEECCSSC
T ss_pred CceEEEEecHHHhh--c-chHHHHHHhcccccCCcEEEEEEecCcc
Confidence 45689999999997 2 3445555554332223455677788863
|
| >3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.30 E-value=0.096 Score=55.27 Aligned_cols=45 Identities=9% Similarity=0.257 Sum_probs=29.6
Q ss_pred CCccEEEEcccccccccCcHHHHHHHHHHHhhcCCCceEEEEEeecCC
Q psy15524 132 SKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTP 179 (930)
Q Consensus 132 ~~l~~vViDE~h~~~~~~~~~~~~~i~~~l~~~~~~~~~i~lSAT~~~ 179 (930)
...-.|++||+|.+.+ ...+..++++.......+-+|+.++|+..
T Consensus 131 ~~~~ii~lDE~d~l~~---q~~L~~l~~~~~~~~s~~~vI~i~n~~d~ 175 (318)
T 3te6_A 131 KRKTLILIQNPENLLS---EKILQYFEKWISSKNSKLSIICVGGHNVT 175 (318)
T ss_dssp SCEEEEEEECCSSSCC---THHHHHHHHHHHCSSCCEEEEEECCSSCC
T ss_pred CCceEEEEecHHHhhc---chHHHHHHhcccccCCcEEEEEEecCccc
Confidence 3456899999999982 33445555544334445678888888754
|
| >2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.98 E-value=0.027 Score=54.66 Aligned_cols=55 Identities=18% Similarity=0.234 Sum_probs=46.3
Q ss_pred ccCCCceeEEEEcCcchhHHHHHHHHhhhccccccCCcceEEEEEecccchhhhHHHHhhh
Q psy15524 272 VIPDSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTK 332 (930)
Q Consensus 272 ~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~ 332 (930)
..+.++.|.+..++...|...|..++.. ...+.++||||+++..++.++..|...
T Consensus 15 ~~~~~i~q~~~~v~~~~K~~~L~~ll~~------~~~~~k~lVF~~~~~~~~~l~~~L~~~ 69 (185)
T 2jgn_A 15 STSENITQKVVWVEESDKRSFLLDLLNA------TGKDSLTLVFVETKKGADSLEDFLYHE 69 (185)
T ss_dssp -CCTTEEEEEEECCGGGHHHHHHHHHHH------C-CCSCEEEEESCHHHHHHHHHHHHHT
T ss_pred CCCCCceEEEEEeCcHHHHHHHHHHHHh------cCCCCeEEEEECCHHHHHHHHHHHHHc
Confidence 3467899999999999999999999953 225679999999999999999999764
|
| >1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=94.96 E-value=0.019 Score=54.62 Aligned_cols=51 Identities=14% Similarity=0.212 Sum_probs=42.2
Q ss_pred CCceeEEEEcCcch-hHHHHHHHHhhhccccccCCcceEEEEEecccchhhhHHHHhhh
Q psy15524 275 DSLKQHFIVTPPKL-RLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTK 332 (930)
Q Consensus 275 ~~i~~~~~~~~~~~-k~~~l~~~l~~~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~ 332 (930)
.++.|+|..++..+ |...|..++. ...+.++||||++++.++.++..|...
T Consensus 2 ~~i~~~~~~~~~~~~K~~~l~~ll~-------~~~~~~~lVF~~~~~~~~~l~~~L~~~ 53 (165)
T 1fuk_A 2 EGIKQFYVNVEEEEYKYECLTDLYD-------SISVTQAVIFCNTRRKVEELTTKLRND 53 (165)
T ss_dssp --CEEEEEEEESGGGHHHHHHHHHH-------HTTCSCEEEEESSHHHHHHHHHHHHHT
T ss_pred CCcEEEEEECCcchhHHHHHHHHHH-------hCCCCCEEEEECCHHHHHHHHHHHHHc
Confidence 46889999888777 9999999984 335679999999999999999999764
|
| >1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B* | Back alignment and structure |
|---|
Probab=94.72 E-value=0.057 Score=64.63 Aligned_cols=72 Identities=22% Similarity=0.194 Sum_probs=56.3
Q ss_pred ccCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHHhh
Q psy15524 4 TQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCK 82 (930)
Q Consensus 4 ~~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~ 82 (930)
..|++.|++|+... +..++|.|+.|||||.+...-+...+.... .+..++|+|+.|+..+.++.+++.++..
T Consensus 10 ~~Ln~~Q~~av~~~--~g~~lV~AgAGSGKT~vL~~ri~~ll~~~~-----~~p~~IL~vTFTnkAA~Em~~Rl~~~l~ 81 (724)
T 1pjr_A 10 AHLNKEQQEAVRTT--EGPLLIMAGAGSGKTRVLTHRIAYLMAEKH-----VAPWNILAITFTNKAAREMRERVQSLLG 81 (724)
T ss_dssp TTSCHHHHHHHHCC--SSCEEEEECTTSCHHHHHHHHHHHHHHTTC-----CCGGGEEEEESSHHHHHHHHHHHHHHHG
T ss_pred hhCCHHHHHHHhCC--CCCEEEEEcCCCCHHHHHHHHHHHHHHhcC-----CCHHHeEEEeccHHHHHHHHHHHHHHhc
Confidence 56999999999763 458999999999999987666665554311 1234599999999999999999988753
|
| >3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus} | Back alignment and structure |
|---|
Probab=94.60 E-value=0.064 Score=58.94 Aligned_cols=83 Identities=20% Similarity=0.137 Sum_probs=50.5
Q ss_pred EEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHHHHhhccCCCcceEEEeCCCchHHHH
Q psy15524 432 VLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEK 511 (930)
Q Consensus 432 ~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~ 511 (930)
.++.|+.|+|||... .+.+ . ....+|++||++++..+.+.+.+....
T Consensus 164 ~~I~G~aGsGKTt~I----~~~~-~---------~~~~lVlTpT~~aa~~l~~kl~~~~~~------------------- 210 (446)
T 3vkw_A 164 VLVDGVPGCGKTKEI----LSRV-N---------FEEDLILVPGRQAAEMIRRRANASGII------------------- 210 (446)
T ss_dssp EEEEECTTSCHHHHH----HHHC-C---------TTTCEEEESCHHHHHHHHHHHTTTSCC-------------------
T ss_pred EEEEcCCCCCHHHHH----HHHh-c---------cCCeEEEeCCHHHHHHHHHHhhhcCcc-------------------
Confidence 689999999999862 2221 1 123699999999998887776432100
Q ss_pred HHHhcCCcEEEECchhHHHhhhccCCcccccceEEEEecchhh
Q psy15524 512 ARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRI 554 (930)
Q Consensus 512 ~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~l 554 (930)
...+.-|.|-++++- +.........+++|+|||-.+
T Consensus 211 ----~~~~~~V~T~dsfL~---~~~~~~~~~~d~liiDE~sm~ 246 (446)
T 3vkw_A 211 ----VATKDNVRTVDSFLM---NYGKGARCQFKRLFIDEGLML 246 (446)
T ss_dssp ----CCCTTTEEEHHHHHH---TTTSSCCCCCSEEEEETGGGS
T ss_pred ----ccccceEEEeHHhhc---CCCCCCCCcCCEEEEeCcccC
Confidence 011122666555432 211122234889999999854
|
| >2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A* | Back alignment and structure |
|---|
Probab=94.52 E-value=0.024 Score=54.94 Aligned_cols=39 Identities=15% Similarity=0.164 Sum_probs=26.3
Q ss_pred CCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCH
Q psy15524 429 GGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTR 476 (930)
Q Consensus 429 ~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~Ptr 476 (930)
|+=.++.+|.|+|||...+ -++..+.. .|.+++++.|..
T Consensus 3 g~i~vi~G~~gsGKTT~ll-~~~~~~~~--------~g~~v~~~~~~~ 41 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELL-SFVEIYKL--------GKKKVAVFKPKI 41 (184)
T ss_dssp CCEEEEEESTTSSHHHHHH-HHHHHHHH--------TTCEEEEEEEC-
T ss_pred cEEEEEECCCCCCHHHHHH-HHHHHHHH--------CCCeEEEEeecc
Confidence 4457889999999998743 33333332 256789998883
|
| >1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B* | Back alignment and structure |
|---|
Probab=94.40 E-value=0.074 Score=63.65 Aligned_cols=72 Identities=22% Similarity=0.196 Sum_probs=54.5
Q ss_pred CCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHHHHhhc
Q psy15524 413 TQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCK 491 (930)
Q Consensus 413 ~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~ 491 (930)
..+++-|.+++.. .+..++|.|+.|||||.+..--+...+.... -+...+|+|+.|+..|.++.+.+.++..
T Consensus 10 ~~Ln~~Q~~av~~--~~g~~lV~AgAGSGKT~vL~~ri~~ll~~~~-----~~p~~IL~vTFTnkAA~Em~~Rl~~~l~ 81 (724)
T 1pjr_A 10 AHLNKEQQEAVRT--TEGPLLIMAGAGSGKTRVLTHRIAYLMAEKH-----VAPWNILAITFTNKAAREMRERVQSLLG 81 (724)
T ss_dssp TTSCHHHHHHHHC--CSSCEEEEECTTSCHHHHHHHHHHHHHHTTC-----CCGGGEEEEESSHHHHHHHHHHHHHHHG
T ss_pred hhCCHHHHHHHhC--CCCCEEEEEcCCCCHHHHHHHHHHHHHHhcC-----CCHHHeEEEeccHHHHHHHHHHHHHHhc
Confidence 4689999999976 3567999999999999985544554444211 1235699999999999999988877653
|
| >2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A* | Back alignment and structure |
|---|
Probab=94.27 E-value=0.048 Score=54.42 Aligned_cols=91 Identities=14% Similarity=0.128 Sum_probs=50.3
Q ss_pred CCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHHHHhhccCCCcceEEEeCCCchH
Q psy15524 429 GGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMK 508 (930)
Q Consensus 429 ~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~ 508 (930)
|.=.++.+++|+|||.+. +-++.++.. .|.+++++.|...- . . ...+.... |- .
T Consensus 12 G~i~litG~mGsGKTT~l-l~~~~r~~~--------~g~kVli~~~~~d~--r-~--~~~i~srl---------G~-~-- 65 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAEL-IRRLHRLEY--------ADVKYLVFKPKIDT--R-S--IRNIQSRT---------GT-S-- 65 (223)
T ss_dssp CEEEEEECSTTSCHHHHH-HHHHHHHHH--------TTCCEEEEEECCCG--G-G--CSSCCCCC---------CC-S--
T ss_pred cEEEEEECCCCCcHHHHH-HHHHHHHHh--------cCCEEEEEEeccCc--h-H--HHHHHHhc---------CC-C--
Confidence 444788999999999874 333433332 36678999886421 0 0 00111111 10 0
Q ss_pred HHHHHHhcCCcEEEECchhHHHhhhccCCcccccceEEEEecchhhh
Q psy15524 509 SEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRIL 555 (930)
Q Consensus 509 ~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~l~ 555 (930)
-..+-+.+...+.+.+... ..-.+.++|||||++.+.
T Consensus 66 --------~~~~~~~~~~~i~~~i~~~--~~~~~~dvViIDEaQ~l~ 102 (223)
T 2b8t_A 66 --------LPSVEVESAPEILNYIMSN--SFNDETKVIGIDEVQFFD 102 (223)
T ss_dssp --------SCCEEESSTHHHHHHHHST--TSCTTCCEEEECSGGGSC
T ss_pred --------ccccccCCHHHHHHHHHHH--hhCCCCCEEEEecCccCc
Confidence 0123345556666665542 122457999999999653
|
| >1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=94.24 E-value=0.069 Score=63.51 Aligned_cols=71 Identities=20% Similarity=0.146 Sum_probs=54.4
Q ss_pred CCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHHHHhhc
Q psy15524 414 QVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCK 491 (930)
Q Consensus 414 ~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~ 491 (930)
.+++-|.+++... +..++|.|+.|||||.+..--+...+.... .+..++|+|+.|+..|.++.+.+.+...
T Consensus 2 ~L~~~Q~~av~~~--~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~-----~~~~~IL~lTfT~~Aa~em~~Rl~~~l~ 72 (673)
T 1uaa_A 2 RLNPGQQQAVEFV--TGPCLVLAGAGSGKTRVITNKIAHLIRGCG-----YQARHIAAVTFTNKAAREMKERVGQTLG 72 (673)
T ss_dssp CCCHHHHHHHHCC--SSEEEECCCTTSCHHHHHHHHHHHHHHHHC-----CCGGGEEEEESSHHHHHHHHHHHHHHSC
T ss_pred CCCHHHHHHHhCC--CCCEEEEeCCCCChHHHHHHHHHHHHHhcC-----CCHHHeEEEeccHHHHHHHHHHHHHHcC
Confidence 4789999999763 567999999999999985544554444311 1245699999999999999999887754
|
| >1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=94.17 E-value=0.079 Score=62.96 Aligned_cols=71 Identities=20% Similarity=0.146 Sum_probs=55.5
Q ss_pred cCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHHhh
Q psy15524 5 QVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCK 82 (930)
Q Consensus 5 ~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~ 82 (930)
.|++-|++|+... +..++|.|+.|||||.+..--+...+.... .+..++|+|+.|+..+.++.+++.+...
T Consensus 2 ~L~~~Q~~av~~~--~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~-----~~~~~IL~lTfT~~Aa~em~~Rl~~~l~ 72 (673)
T 1uaa_A 2 RLNPGQQQAVEFV--TGPCLVLAGAGSGKTRVITNKIAHLIRGCG-----YQARHIAAVTFTNKAAREMKERVGQTLG 72 (673)
T ss_dssp CCCHHHHHHHHCC--SSEEEECCCTTSCHHHHHHHHHHHHHHHHC-----CCGGGEEEEESSHHHHHHHHHHHHHHSC
T ss_pred CCCHHHHHHHhCC--CCCEEEEeCCCCChHHHHHHHHHHHHHhcC-----CCHHHeEEEeccHHHHHHHHHHHHHHcC
Confidence 4899999999853 568999999999999987666655554421 1234599999999999999999987743
|
| >2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=93.91 E-value=0.065 Score=49.84 Aligned_cols=44 Identities=16% Similarity=0.313 Sum_probs=27.4
Q ss_pred CccEEEEcccccccccCcHHHHHHHHHHHhhcCCCceEEEEEeecCC
Q psy15524 133 KVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTP 179 (930)
Q Consensus 133 ~l~~vViDE~h~~~~~~~~~~~~~i~~~l~~~~~~~~~i~lSAT~~~ 179 (930)
+.+++||||.+.+.... ...+..++..+.... ..++.+|...++
T Consensus 83 ~~~lLilDE~~~~~~~~-~~~l~~li~~~~~~g--~~~iiits~~~p 126 (149)
T 2kjq_A 83 EAEYLAVDQVEKLGNEE-QALLFSIFNRFRNSG--KGFLLLGSEYTP 126 (149)
T ss_dssp GCSEEEEESTTCCCSHH-HHHHHHHHHHHHHHT--CCEEEEEESSCT
T ss_pred CCCEEEEeCccccChHH-HHHHHHHHHHHHHcC--CcEEEEECCCCH
Confidence 46899999999865544 555666666665443 133555555443
|
| >3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A* | Back alignment and structure |
|---|
Probab=93.90 E-value=0.08 Score=67.33 Aligned_cols=73 Identities=23% Similarity=0.194 Sum_probs=55.9
Q ss_pred CCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHHHHhh
Q psy15524 413 TQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLC 490 (930)
Q Consensus 413 ~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~ 490 (930)
..+|+-|.++|..- +++++|.|..|||||.+.+--++..+..... ..+..+++++++|+..|.++.+.+...+
T Consensus 9 ~~~t~eQ~~~i~~~--~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~~---~~~~~~il~~Tft~~aa~e~~~ri~~~l 81 (1232)
T 3u4q_A 9 STWTDDQWNAIVST--GQDILVAAAAGSGKTAVLVERMIRKITAEEN---PIDVDRLLVVTFTNASAAEMKHRIAEAL 81 (1232)
T ss_dssp -CCCHHHHHHHHCC--SSCEEEEECTTCCHHHHHHHHHHHHHSCSSS---CCCGGGEEEECSSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHhCC--CCCEEEEecCCCcHHHHHHHHHHHHHhcCCC---CCCccceEEEeccHHHHHHHHHHHHHHH
Confidence 36899999999764 7899999999999999865555655543111 1134579999999999999998887754
|
| >3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C | Back alignment and structure |
|---|
Probab=93.88 E-value=0.25 Score=52.55 Aligned_cols=44 Identities=18% Similarity=0.172 Sum_probs=25.7
Q ss_pred ceEEEEecchhhhhcC-------cHHHHHHHHHHHhhcC-ccceEEEEcccc
Q psy15524 543 VEHLVLDEADRILDQG-------YERDIAEFLEILKKQK-PQFQSILLSATL 586 (930)
Q Consensus 543 l~~lVlDEah~l~~~g-------~~~~l~~i~~~l~~~~-~~~q~vl~SAT~ 586 (930)
-.+|+|||+|.+.... .......++..+.... ....++++.||-
T Consensus 111 ~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~atn 162 (322)
T 3eie_A 111 PSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATN 162 (322)
T ss_dssp SEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCCEEEEEEES
T ss_pred CeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCceEEEEecC
Confidence 4689999999986422 2344555666665331 233455665654
|
| >1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A* | Back alignment and structure |
|---|
Probab=93.78 E-value=0.28 Score=52.21 Aligned_cols=25 Identities=16% Similarity=0.186 Sum_probs=18.0
Q ss_pred CCcEEEEccCCCchhHHhhHHHHHHH
Q psy15524 429 GGDVLVRSQTGSGKTLAYAIPIIQKL 454 (930)
Q Consensus 429 ~~d~lv~a~TGsGKTl~~~lp~l~~l 454 (930)
+..+++.+|+|+|||... -.+...+
T Consensus 37 ~~~lll~G~~GtGKT~la-~~i~~~~ 61 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLL-QAAGNEA 61 (324)
T ss_dssp CSSEEEECSSSSSHHHHH-HHHHHHH
T ss_pred CCeEEEECCCCCcHHHHH-HHHHHHH
Confidence 357999999999999763 3334444
|
| >3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A* | Back alignment and structure |
|---|
Probab=93.66 E-value=0.093 Score=66.72 Aligned_cols=108 Identities=17% Similarity=0.048 Sum_probs=71.8
Q ss_pred cCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHHhhhc
Q psy15524 5 QVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSF 84 (930)
Q Consensus 5 ~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~ 84 (930)
.+|+-|.++|..- +.+++|.|+-|||||.+.+--++..+...... .+..++|++++|++.+.++.+++.......
T Consensus 10 ~~t~eQ~~~i~~~--~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~~~---~~~~~il~~Tft~~aa~e~~~ri~~~l~~~ 84 (1232)
T 3u4q_A 10 TWTDDQWNAIVST--GQDILVAAAAGSGKTAVLVERMIRKITAEENP---IDVDRLLVVTFTNASAAEMKHRIAEALEKE 84 (1232)
T ss_dssp CCCHHHHHHHHCC--SSCEEEEECTTCCHHHHHHHHHHHHHSCSSSC---CCGGGEEEECSSHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhCC--CCCEEEEecCCCcHHHHHHHHHHHHHhcCCCC---CCccceEEEeccHHHHHHHHHHHHHHHHHH
Confidence 5899999999764 77999999999999998777677666542211 123469999999999999999998865321
Q ss_pred CCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHh
Q psy15524 85 TWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCK 124 (930)
Q Consensus 85 ~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~ 124 (930)
... ... .......+..-..+-|+|-..+...+.
T Consensus 85 ~~~------~~~-~~~~~~~~~~~~~~~i~T~hsf~~~~l 117 (1232)
T 3u4q_A 85 LVQ------RPG-SLHIRRQLSLLNRASISTLHSFCLQVL 117 (1232)
T ss_dssp HHH------STT-CHHHHHHHHHTTTSEEECHHHHHHHHH
T ss_pred hhc------Ccc-hHHHHHHHhccCCCeEEeHHHHHHHHH
Confidence 100 001 112222222224578899877654443
|
| >1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14 | Back alignment and structure |
|---|
Probab=93.62 E-value=0.24 Score=48.04 Aligned_cols=39 Identities=18% Similarity=0.112 Sum_probs=26.9
Q ss_pred CCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCH
Q psy15524 429 GGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTR 476 (930)
Q Consensus 429 ~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~Ptr 476 (930)
|+=.++.+|+|||||.+. +-++.++.. .|.+++++.|..
T Consensus 8 g~i~v~~G~mgsGKTT~l-l~~a~r~~~--------~g~kV~v~k~~~ 46 (191)
T 1xx6_A 8 GWVEVIVGPMYSGKSEEL-IRRIRRAKI--------AKQKIQVFKPEI 46 (191)
T ss_dssp CEEEEEECSTTSSHHHHH-HHHHHHHHH--------TTCCEEEEEEC-
T ss_pred CEEEEEECCCCCcHHHHH-HHHHHHHHH--------CCCEEEEEEecc
Confidence 344788999999999874 344444432 367899999983
|
| >2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A* | Back alignment and structure |
|---|
Probab=93.55 E-value=0.07 Score=53.20 Aligned_cols=92 Identities=12% Similarity=0.033 Sum_probs=51.7
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHHhhhcCCceeEEeeCCCch
Q psy15524 19 DGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKM 98 (930)
Q Consensus 19 ~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~ 98 (930)
.|.=.++.+|+|+|||...+-.+...... +.+++++.|...- . .. ..+.... |-.
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r~~~~---------g~kVli~~~~~d~--r-~~--~~i~srl---------G~~-- 65 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHRLEYA---------DVKYLVFKPKIDT--R-SI--RNIQSRT---------GTS-- 65 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHHHHHT---------TCCEEEEEECCCG--G-GC--SSCCCCC---------CCS--
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHHHHhc---------CCEEEEEEeccCc--h-HH--HHHHHhc---------CCC--
Confidence 34558889999999998755554443322 4458888876631 0 00 0001110 100
Q ss_pred HHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEccccccc
Q psy15524 99 KSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRIL 146 (930)
Q Consensus 99 ~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~ 146 (930)
...+-+.+.+.+...+... ..-...++|||||++.+.
T Consensus 66 ---------~~~~~~~~~~~i~~~i~~~--~~~~~~dvViIDEaQ~l~ 102 (223)
T 2b8t_A 66 ---------LPSVEVESAPEILNYIMSN--SFNDETKVIGIDEVQFFD 102 (223)
T ss_dssp ---------SCCEEESSTHHHHHHHHST--TSCTTCCEEEECSGGGSC
T ss_pred ---------ccccccCCHHHHHHHHHHH--hhCCCCCEEEEecCccCc
Confidence 0123355666676666531 223458999999999753
|
| >2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=93.37 E-value=0.11 Score=60.24 Aligned_cols=113 Identities=20% Similarity=0.258 Sum_probs=70.7
Q ss_pred CCCHHHHHhHHhhhcC--CcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHHHHhhc
Q psy15524 414 QVTTVQQLSIQPILDG--GDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCK 491 (930)
Q Consensus 414 ~~~~iQ~~~i~~il~~--~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~ 491 (930)
.+|.-|.+++..++.- .-.++.|+-|.|||.+..+.+-. +. ..++|.+|+.+-+..+.+...+
T Consensus 175 ~~T~dQ~~al~~~~~~~~~~~vlta~RGRGKSa~lG~~~a~-~~-----------~~~~vtAP~~~a~~~l~~~~~~--- 239 (671)
T 2zpa_A 175 APQPEQQQLLKQLMTMPPGVAAVTAARGRGKSALAGQLISR-IA-----------GRAIVTAPAKASTDVLAQFAGE--- 239 (671)
T ss_dssp SCCHHHHHHHHHHTTCCSEEEEEEECTTSSHHHHHHHHHHH-SS-----------SCEEEECSSCCSCHHHHHHHGG---
T ss_pred CCCHHHHHHHHHHHHhhhCeEEEecCCCCCHHHHHHHHHHH-HH-----------hCcEEECCCHHHHHHHHHHhhC---
Confidence 5688899999888763 33789999999999664444432 21 1269999998877654433211
Q ss_pred cCCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhccCCcccccceEEEEecchhhhhcCcHHHHHHHHHHHh
Q psy15524 492 SFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILK 571 (930)
Q Consensus 492 ~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~l~~~g~~~~l~~i~~~l~ 571 (930)
.|-+..|..+.. .....+++|||||=.+. -..+..++ .
T Consensus 240 ---------------------------~i~~~~Pd~~~~--------~~~~~dlliVDEAAaIp----~pll~~ll---~ 277 (671)
T 2zpa_A 240 ---------------------------KFRFIAPDALLA--------SDEQADWLVVDEAAAIP----APLLHQLV---S 277 (671)
T ss_dssp ---------------------------GCCBCCHHHHHH--------SCCCCSEEEEETGGGSC----HHHHHHHH---T
T ss_pred ---------------------------CeEEeCchhhhh--------CcccCCEEEEEchhcCC----HHHHHHHH---h
Confidence 023445544321 12358999999999775 12233322 2
Q ss_pred hcCccceEEEEccccC
Q psy15524 572 KQKPQFQSILLSATLT 587 (930)
Q Consensus 572 ~~~~~~q~vl~SAT~~ 587 (930)
....++||.|+.
T Consensus 278 ----~~~~v~~~tTv~ 289 (671)
T 2zpa_A 278 ----RFPRTLLTTTVQ 289 (671)
T ss_dssp ----TSSEEEEEEEBS
T ss_pred ----hCCeEEEEecCC
Confidence 334578888875
|
| >3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B* | Back alignment and structure |
|---|
Probab=93.37 E-value=0.58 Score=49.66 Aligned_cols=39 Identities=15% Similarity=0.175 Sum_probs=22.2
Q ss_pred cceEEEEecchhhhhcCcHHHHHHHHHHHhhcCccceEEEEc
Q psy15524 542 KVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLS 583 (930)
Q Consensus 542 ~l~~lVlDEah~l~~~g~~~~l~~i~~~l~~~~~~~q~vl~S 583 (930)
...+++|||+|.+.... ....++..+.......++++.+
T Consensus 105 ~~~vliiDEi~~l~~~~---~~~~L~~~le~~~~~~~iI~~~ 143 (324)
T 3u61_B 105 RQKVIVIDEFDRSGLAE---SQRHLRSFMEAYSSNCSIIITA 143 (324)
T ss_dssp CEEEEEEESCCCGGGHH---HHHHHHHHHHHHGGGCEEEEEE
T ss_pred CCeEEEEECCcccCcHH---HHHHHHHHHHhCCCCcEEEEEe
Confidence 57899999999886221 2233334343333355666533
|
| >2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426} | Back alignment and structure |
|---|
Probab=93.32 E-value=0.68 Score=45.18 Aligned_cols=24 Identities=25% Similarity=0.375 Sum_probs=17.8
Q ss_pred CcEEEEccCCCchhHHhhHHHHHHH
Q psy15524 430 GDVLVRSQTGSGKTLAYAIPIIQKL 454 (930)
Q Consensus 430 ~d~lv~a~TGsGKTl~~~lp~l~~l 454 (930)
+.+++.+|+|+|||..+ -.+...+
T Consensus 55 ~~~~l~G~~GtGKT~la-~~i~~~~ 78 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLL-AAIANEL 78 (202)
T ss_dssp CEEEEECSTTSSHHHHH-HHHHHHH
T ss_pred CeEEEECCCCCCHHHHH-HHHHHHH
Confidence 67999999999999863 3344444
|
| >1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E* | Back alignment and structure |
|---|
Probab=93.18 E-value=0.46 Score=50.77 Aligned_cols=36 Identities=11% Similarity=0.140 Sum_probs=26.8
Q ss_pred CcHHHHHHHHHhh----cCC---cEEEEcCCCChHHHHHHHHH
Q psy15524 6 VTTVQQLSIQPIL----DGG---DVLVRSQTGSGKTLAYAIPI 41 (930)
Q Consensus 6 l~~~Q~~ai~~~~----~g~---~~lv~apTGsGKT~~~~l~~ 41 (930)
++|+|.+++..+. +|+ .+++.||.|+|||.....-+
T Consensus 3 ~~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la 45 (334)
T 1a5t_A 3 WYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALS 45 (334)
T ss_dssp CCGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHH
Confidence 5789998887654 343 38999999999998654433
|
| >1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A* | Back alignment and structure |
|---|
Probab=93.16 E-value=0.55 Score=49.90 Aligned_cols=18 Identities=22% Similarity=0.442 Sum_probs=15.6
Q ss_pred CcEEEEcCCCChHHHHHH
Q psy15524 21 GDVLVRSQTGSGKTLAYA 38 (930)
Q Consensus 21 ~~~lv~apTGsGKT~~~~ 38 (930)
..++++||+|+|||...-
T Consensus 38 ~~lll~G~~GtGKT~la~ 55 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQ 55 (324)
T ss_dssp SSEEEECSSSSSHHHHHH
T ss_pred CeEEEECCCCCcHHHHHH
Confidence 579999999999998643
|
| >2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=93.13 E-value=1.1 Score=43.92 Aligned_cols=40 Identities=20% Similarity=0.230 Sum_probs=24.3
Q ss_pred CCccEEEEcccccccccCcHHHHHHHHHHHhhcCCCceEEEEEe
Q psy15524 132 SKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSA 175 (930)
Q Consensus 132 ~~l~~vViDE~h~~~~~~~~~~~~~i~~~l~~~~~~~~~i~lSA 175 (930)
..-.+|||||+|.+... ....+...+.....+..+++.|.
T Consensus 101 ~~~~vliiDe~~~l~~~----~~~~l~~~l~~~~~~~~~i~~~~ 140 (226)
T 2chg_A 101 APFKIIFLDEADALTAD----AQAALRRTMEMYSKSCRFILSCN 140 (226)
T ss_dssp CSCEEEEEETGGGSCHH----HHHHHHHHHHHTTTTEEEEEEES
T ss_pred cCceEEEEeChhhcCHH----HHHHHHHHHHhcCCCCeEEEEeC
Confidence 45679999999988542 23344444444445556666553
|
| >3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=92.99 E-value=0.47 Score=49.30 Aligned_cols=19 Identities=32% Similarity=0.441 Sum_probs=15.9
Q ss_pred cCCcEEEEccCCCchhHHh
Q psy15524 428 DGGDVLVRSQTGSGKTLAY 446 (930)
Q Consensus 428 ~~~d~lv~a~TGsGKTl~~ 446 (930)
.++.+++.+|+|+|||...
T Consensus 50 ~~~~~ll~G~~GtGKT~la 68 (285)
T 3h4m_A 50 PPKGILLYGPPGTGKTLLA 68 (285)
T ss_dssp CCSEEEEESSSSSSHHHHH
T ss_pred CCCeEEEECCCCCcHHHHH
Confidence 3567999999999999853
|
| >3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A | Back alignment and structure |
|---|
Probab=92.92 E-value=0.82 Score=45.78 Aligned_cols=19 Identities=16% Similarity=0.144 Sum_probs=16.0
Q ss_pred cCCcEEEEccCCCchhHHh
Q psy15524 428 DGGDVLVRSQTGSGKTLAY 446 (930)
Q Consensus 428 ~~~d~lv~a~TGsGKTl~~ 446 (930)
.+..+++.+|+|+|||...
T Consensus 51 ~~~~~ll~G~~G~GKT~la 69 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLI 69 (242)
T ss_dssp SCSEEEEECSTTSSHHHHH
T ss_pred CCCeEEEECCCCCCHHHHH
Confidence 3567999999999999853
|
| >2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A* | Back alignment and structure |
|---|
Probab=92.82 E-value=0.19 Score=49.38 Aligned_cols=37 Identities=16% Similarity=0.115 Sum_probs=25.0
Q ss_pred EEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHH
Q psy15524 432 VLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRE 477 (930)
Q Consensus 432 ~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~Ptre 477 (930)
.++.++.|||||.+.+--+. +... .|.+++++.|...
T Consensus 31 ~vitG~MgsGKTT~lL~~a~-r~~~--------~g~kVli~k~~~d 67 (214)
T 2j9r_A 31 EVICGSMFSGKSEELIRRVR-RTQF--------AKQHAIVFKPCID 67 (214)
T ss_dssp EEEECSTTSCHHHHHHHHHH-HHHH--------TTCCEEEEECC--
T ss_pred EEEECCCCCcHHHHHHHHHH-HHHH--------CCCEEEEEEeccC
Confidence 56899999999987443333 3332 3778999999753
|
| >3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus} | Back alignment and structure |
|---|
Probab=92.79 E-value=0.081 Score=58.13 Aligned_cols=83 Identities=20% Similarity=0.123 Sum_probs=51.7
Q ss_pred EEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHHhhhcCCceeEEeeCCCchHHHH
Q psy15524 23 VLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEK 102 (930)
Q Consensus 23 ~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 102 (930)
.++.|+.|+|||....-- + .. ...+|++||++++.++.+.+.+... .
T Consensus 164 ~~I~G~aGsGKTt~I~~~----~-~~---------~~~lVlTpT~~aa~~l~~kl~~~~~-------------~------ 210 (446)
T 3vkw_A 164 VLVDGVPGCGKTKEILSR----V-NF---------EEDLILVPGRQAAEMIRRRANASGI-------------I------ 210 (446)
T ss_dssp EEEEECTTSCHHHHHHHH----C-CT---------TTCEEEESCHHHHHHHHHHHTTTSC-------------C------
T ss_pred EEEEcCCCCCHHHHHHHH----h-cc---------CCeEEEeCCHHHHHHHHHHhhhcCc-------------c------
Confidence 789999999999864322 1 10 1269999999999988877633210 0
Q ss_pred HHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccc
Q psy15524 103 ARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRI 145 (930)
Q Consensus 103 ~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~ 145 (930)
.....-+.|-+.++.. .........+.|||||+-.+
T Consensus 211 ----~~~~~~V~T~dsfL~~---~~~~~~~~~d~liiDE~sm~ 246 (446)
T 3vkw_A 211 ----VATKDNVRTVDSFLMN---YGKGARCQFKRLFIDEGLML 246 (446)
T ss_dssp ----CCCTTTEEEHHHHHHT---TTSSCCCCCSEEEEETGGGS
T ss_pred ----ccccceEEEeHHhhcC---CCCCCCCcCCEEEEeCcccC
Confidence 0112335677665432 12222235899999999854
|
| >2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A* | Back alignment and structure |
|---|
Probab=92.69 E-value=0.25 Score=47.69 Aligned_cols=40 Identities=15% Similarity=0.026 Sum_probs=27.2
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccH
Q psy15524 19 DGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTR 67 (930)
Q Consensus 19 ~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~ 67 (930)
.|+=.++.+|.|+|||...+--+...... +.+++++.|..
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~~~~~~~~---------g~~v~~~~~~~ 41 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSFVEIYKLG---------KKKVAVFKPKI 41 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHHHT---------TCEEEEEEEC-
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHHHHHC---------CCeEEEEeecc
Confidence 35567899999999998755444333322 44688888885
|
| >2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=92.60 E-value=0.41 Score=52.13 Aligned_cols=17 Identities=35% Similarity=0.505 Sum_probs=15.0
Q ss_pred CCcEEEEccCCCchhHH
Q psy15524 429 GGDVLVRSQTGSGKTLA 445 (930)
Q Consensus 429 ~~d~lv~a~TGsGKTl~ 445 (930)
+..+++.+|+|+|||..
T Consensus 44 ~~~vll~G~~G~GKT~l 60 (387)
T 2v1u_A 44 PSNALLYGLTGTGKTAV 60 (387)
T ss_dssp CCCEEECBCTTSSHHHH
T ss_pred CCcEEEECCCCCCHHHH
Confidence 45799999999999986
|
| >3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=92.52 E-value=0.65 Score=48.73 Aligned_cols=19 Identities=37% Similarity=0.427 Sum_probs=16.0
Q ss_pred cCCcEEEEccCCCchhHHh
Q psy15524 428 DGGDVLVRSQTGSGKTLAY 446 (930)
Q Consensus 428 ~~~d~lv~a~TGsGKTl~~ 446 (930)
.++.+++.+|+|+|||..+
T Consensus 48 ~~~~vLL~Gp~GtGKT~la 66 (301)
T 3cf0_A 48 PSKGVLFYGPPGCGKTLLA 66 (301)
T ss_dssp CCSEEEEECSSSSSHHHHH
T ss_pred CCceEEEECCCCcCHHHHH
Confidence 3567999999999999863
|
| >1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14 | Back alignment and structure |
|---|
Probab=92.21 E-value=0.48 Score=45.87 Aligned_cols=39 Identities=15% Similarity=0.014 Sum_probs=26.8
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccH
Q psy15524 20 GGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTR 67 (930)
Q Consensus 20 g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~ 67 (930)
|+=.++.+|.|+|||...+--+.+.... +.+++++-|..
T Consensus 8 g~i~v~~G~mgsGKTT~ll~~a~r~~~~---------g~kV~v~k~~~ 46 (191)
T 1xx6_A 8 GWVEVIVGPMYSGKSEELIRRIRRAKIA---------KQKIQVFKPEI 46 (191)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHT---------TCCEEEEEEC-
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHC---------CCEEEEEEecc
Confidence 4447889999999998755444443322 45699998884
|
| >1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E* | Back alignment and structure |
|---|
Probab=92.17 E-value=0.48 Score=50.61 Aligned_cols=40 Identities=13% Similarity=0.152 Sum_probs=26.0
Q ss_pred ccceEEEEecchhhhhcCcHHHHHHHHHHHhhcCccceEEEEcc
Q psy15524 541 SKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSA 584 (930)
Q Consensus 541 ~~l~~lVlDEah~l~~~g~~~~l~~i~~~l~~~~~~~q~vl~SA 584 (930)
...+++||||||.+... ....+++.+...++...+++.|.
T Consensus 107 ~~~kvviIdead~l~~~----a~naLLk~lEep~~~~~~Il~t~ 146 (334)
T 1a5t_A 107 GGAKVVWVTDAALLTDA----AANALLKTLEEPPAETWFFLATR 146 (334)
T ss_dssp SSCEEEEESCGGGBCHH----HHHHHHHHHTSCCTTEEEEEEES
T ss_pred CCcEEEEECchhhcCHH----HHHHHHHHhcCCCCCeEEEEEeC
Confidence 46789999999988643 34566777765443444555443
|
| >1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A* | Back alignment and structure |
|---|
Probab=92.12 E-value=1.3 Score=45.51 Aligned_cols=47 Identities=21% Similarity=0.319 Sum_probs=26.7
Q ss_pred cceEEEEecchhhhhc------CcHHHHHHHHHHHhhcC-ccceEEEEccccCH
Q psy15524 542 KVEHLVLDEADRILDQ------GYERDIAEFLEILKKQK-PQFQSILLSATLTP 588 (930)
Q Consensus 542 ~l~~lVlDEah~l~~~------g~~~~l~~i~~~l~~~~-~~~q~vl~SAT~~~ 588 (930)
.-.+|+|||+|.+... .-...+..+...+.... ...+++++.+|-.+
T Consensus 124 ~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~~ 177 (272)
T 1d2n_A 124 QLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRK 177 (272)
T ss_dssp SEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCH
T ss_pred CCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEEEecCCh
Confidence 3578999999998432 12333444444444321 24466666666554
|
| >3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A* | Back alignment and structure |
|---|
Probab=92.09 E-value=0.26 Score=51.97 Aligned_cols=40 Identities=20% Similarity=0.315 Sum_probs=24.8
Q ss_pred eEEEEecchhhhhcC-----cHHHHHHHHHHHhhcCccceEEEEc
Q psy15524 544 EHLVLDEADRILDQG-----YERDIAEFLEILKKQKPQFQSILLS 583 (930)
Q Consensus 544 ~~lVlDEah~l~~~g-----~~~~l~~i~~~l~~~~~~~q~vl~S 583 (930)
.+|+|||+|.+.... -...+..++..+........+++.+
T Consensus 132 ~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~~~ 176 (309)
T 3syl_A 132 GVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVILAG 176 (309)
T ss_dssp SEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEEEE
T ss_pred CEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 589999999885321 3455566677776544444444433
|
| >3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A* | Back alignment and structure |
|---|
Probab=92.06 E-value=0.15 Score=53.88 Aligned_cols=42 Identities=19% Similarity=0.287 Sum_probs=26.6
Q ss_pred cEEEEcccccccccC-----cHHHHHHHHHHHhhcCCCceEEEEEee
Q psy15524 135 EHLVLDEADRILDQG-----YERDIAEFLEILKKQKPQFQSILLSAT 176 (930)
Q Consensus 135 ~~vViDE~h~~~~~~-----~~~~~~~i~~~l~~~~~~~~~i~lSAT 176 (930)
++|+|||+|.+.... -...+..++..+.....++.+|+.+.+
T Consensus 132 ~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~~~~~ 178 (309)
T 3syl_A 132 GVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVILAGYA 178 (309)
T ss_dssp SEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEEEECH
T ss_pred CEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEEeCCh
Confidence 599999999986332 234445566666655556666665544
|
| >2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=91.29 E-value=0.028 Score=53.74 Aligned_cols=50 Identities=12% Similarity=0.270 Sum_probs=42.0
Q ss_pred CceeEEEEcCc-chhHHHHHHHHhhhccccccCCcceEEEEEecccchhhhHHHHhhh
Q psy15524 276 SLKQHFIVTPP-KLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTK 332 (930)
Q Consensus 276 ~i~~~~~~~~~-~~k~~~l~~~l~~~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~ 332 (930)
++.|.+..++. ..|...|..++ ....+.++||||+++..++.++..|+..
T Consensus 3 ~i~~~~~~~~~~~~k~~~l~~ll-------~~~~~~~~iVF~~~~~~~~~l~~~L~~~ 53 (170)
T 2yjt_D 3 KIHQWYYRADDLEHKTALLVHLL-------KQPEATRSIVFVRKRERVHELANWLREA 53 (170)
Confidence 57788888887 88999988888 3345679999999999999999999765
|
| >2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=92.00 E-value=1.6 Score=42.89 Aligned_cols=40 Identities=20% Similarity=0.230 Sum_probs=23.6
Q ss_pred ccceEEEEecchhhhhcCcHHHHHHHHHHHhhcCccceEEEEcc
Q psy15524 541 SKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSA 584 (930)
Q Consensus 541 ~~l~~lVlDEah~l~~~g~~~~l~~i~~~l~~~~~~~q~vl~SA 584 (930)
..-.++||||+|.+... ....+...+........+++.|.
T Consensus 101 ~~~~vliiDe~~~l~~~----~~~~l~~~l~~~~~~~~~i~~~~ 140 (226)
T 2chg_A 101 APFKIIFLDEADALTAD----AQAALRRTMEMYSKSCRFILSCN 140 (226)
T ss_dssp CSCEEEEEETGGGSCHH----HHHHHHHHHHHTTTTEEEEEEES
T ss_pred cCceEEEEeChhhcCHH----HHHHHHHHHHhcCCCCeEEEEeC
Confidence 44678999999987542 23444445544334555555443
|
| >3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.00 E-value=0.48 Score=51.88 Aligned_cols=18 Identities=28% Similarity=0.436 Sum_probs=15.6
Q ss_pred CCcEEEEccCCCchhHHh
Q psy15524 429 GGDVLVRSQTGSGKTLAY 446 (930)
Q Consensus 429 ~~d~lv~a~TGsGKTl~~ 446 (930)
.+.+++.+|+|+|||..+
T Consensus 148 ~~~vLL~GppGtGKT~la 165 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLA 165 (389)
T ss_dssp CSEEEEESSTTSCHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 467999999999999863
|
| >1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A* | Back alignment and structure |
|---|
Probab=91.86 E-value=0.6 Score=44.98 Aligned_cols=38 Identities=16% Similarity=0.156 Sum_probs=26.5
Q ss_pred CCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccC
Q psy15524 429 GGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPT 475 (930)
Q Consensus 429 ~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt 475 (930)
|+=.++.+|.|||||.- ++-.+.+... .+.+++++.|.
T Consensus 20 g~l~fiyG~MgsGKTt~-Ll~~i~n~~~--------~~~kvl~~kp~ 57 (195)
T 1w4r_A 20 GQIQVILGPMFSGKSTE-LMRRVRRFQI--------AQYKCLVIKYA 57 (195)
T ss_dssp CEEEEEEECTTSCHHHH-HHHHHHHHHH--------TTCCEEEEEET
T ss_pred eEEEEEECCCCCcHHHH-HHHHHHHHHH--------cCCeEEEEccc
Confidence 44478899999999965 4444444332 25779999887
|
| >2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A* | Back alignment and structure |
|---|
Probab=91.71 E-value=1 Score=50.11 Aligned_cols=19 Identities=21% Similarity=0.242 Sum_probs=16.0
Q ss_pred CCcEEEEcCCCChHHHHHH
Q psy15524 20 GGDVLVRSQTGSGKTLAYA 38 (930)
Q Consensus 20 g~~~lv~apTGsGKT~~~~ 38 (930)
+..++++||+|+|||....
T Consensus 130 ~~~lll~Gp~G~GKTtLa~ 148 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQ 148 (440)
T ss_dssp SCCEEEECSSSSSHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 3579999999999998644
|
| >2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=91.68 E-value=0.33 Score=56.22 Aligned_cols=114 Identities=20% Similarity=0.261 Sum_probs=72.1
Q ss_pred cCcHHHHHHHHHhhc--CCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHHhh
Q psy15524 5 QVTTVQQLSIQPILD--GGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCK 82 (930)
Q Consensus 5 ~l~~~Q~~ai~~~~~--g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~ 82 (930)
.+|.-|++++..++. ..-.++.|+-|.|||.+.-+.+.. +. ..++|.+|+.+=+..+++. ..
T Consensus 175 ~~T~dQ~~al~~~~~~~~~~~vlta~RGRGKSa~lG~~~a~-~~-----------~~~~vtAP~~~a~~~l~~~----~~ 238 (671)
T 2zpa_A 175 APQPEQQQLLKQLMTMPPGVAAVTAARGRGKSALAGQLISR-IA-----------GRAIVTAPAKASTDVLAQF----AG 238 (671)
T ss_dssp SCCHHHHHHHHHHTTCCSEEEEEEECTTSSHHHHHHHHHHH-SS-----------SCEEEECSSCCSCHHHHHH----HG
T ss_pred CCCHHHHHHHHHHHHhhhCeEEEecCCCCCHHHHHHHHHHH-HH-----------hCcEEECCCHHHHHHHHHH----hh
Confidence 578999999988775 234799999999999654444432 21 1269999998866544332 11
Q ss_pred hcCCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCcHHHHHHHHHHHh
Q psy15524 83 SFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILK 162 (930)
Q Consensus 83 ~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~~~~~~~i~~~l~ 162 (930)
. .|=+..|..+... ..+.++||||||=.+. -+.+..++.
T Consensus 239 ~--------------------------~i~~~~Pd~~~~~--------~~~~dlliVDEAAaIp----~pll~~ll~--- 277 (671)
T 2zpa_A 239 E--------------------------KFRFIAPDALLAS--------DEQADWLVVDEAAAIP----APLLHQLVS--- 277 (671)
T ss_dssp G--------------------------GCCBCCHHHHHHS--------CCCCSEEEEETGGGSC----HHHHHHHHT---
T ss_pred C--------------------------CeEEeCchhhhhC--------cccCCEEEEEchhcCC----HHHHHHHHh---
Confidence 0 0223357554321 3458999999998774 233333332
Q ss_pred hcCCCceEEEEEeecCC
Q psy15524 163 KQKPQFQSILLSATLTP 179 (930)
Q Consensus 163 ~~~~~~~~i~lSAT~~~ 179 (930)
....+.||.|...
T Consensus 278 ----~~~~v~~~tTv~G 290 (671)
T 2zpa_A 278 ----RFPRTLLTTTVQG 290 (671)
T ss_dssp ----TSSEEEEEEEBSS
T ss_pred ----hCCeEEEEecCCc
Confidence 1246888999865
|
| >2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14 | Back alignment and structure |
|---|
Probab=91.64 E-value=0.38 Score=47.66 Aligned_cols=39 Identities=15% Similarity=0.130 Sum_probs=27.0
Q ss_pred CCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCH
Q psy15524 429 GGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTR 476 (930)
Q Consensus 429 ~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~Ptr 476 (930)
|+=.++.++.|||||.+.+--+. +.. ..|.+++++-|..
T Consensus 19 g~l~v~~G~MgsGKTT~lL~~~~-r~~--------~~g~kvli~kp~~ 57 (234)
T 2orv_A 19 GQIQVILGPMFSGKSTELMRRVR-RFQ--------IAQYKCLVIKYAK 57 (234)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH-HHH--------TTTCCEEEEEETT
T ss_pred eEEEEEECCCCCcHHHHHHHHHH-HHH--------HCCCeEEEEeecC
Confidence 44467899999999987443333 332 3477899999875
|
| >2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A* | Back alignment and structure |
|---|
Probab=91.38 E-value=1.2 Score=49.59 Aligned_cols=25 Identities=20% Similarity=0.166 Sum_probs=18.0
Q ss_pred CCcEEEEccCCCchhHHhhHHHHHHH
Q psy15524 429 GGDVLVRSQTGSGKTLAYAIPIIQKL 454 (930)
Q Consensus 429 ~~d~lv~a~TGsGKTl~~~lp~l~~l 454 (930)
...+++.||+|+|||..+ -.+...+
T Consensus 130 ~~~lll~Gp~G~GKTtLa-~aia~~l 154 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLL-QSIGNYV 154 (440)
T ss_dssp SCCEEEECSSSSSHHHHH-HHHHHHH
T ss_pred CCeEEEECCCCCCHHHHH-HHHHHHH
Confidence 356999999999999863 3333444
|
| >3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A | Back alignment and structure |
|---|
Probab=91.21 E-value=0.12 Score=51.22 Aligned_cols=51 Identities=16% Similarity=0.214 Sum_probs=42.7
Q ss_pred CCceeEEEEcCcchhHHHHHHHHhhhccccccCCcceEEEEEecccchhhhHHHHhhh
Q psy15524 275 DSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTK 332 (930)
Q Consensus 275 ~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~ 332 (930)
..+.+.++.++...|...|..++. ...++++||||+++..++.++..|...
T Consensus 4 i~~~~~~~~~~~~~k~~~l~~ll~-------~~~~~~~lVF~~~~~~~~~l~~~L~~~ 54 (212)
T 3eaq_A 4 VTYEEEAVPAPVRGRLEVLSDLLY-------VASPDRAMVFTRTKAETEEIAQGLLRL 54 (212)
T ss_dssp CCBCCEEEECCTTSHHHHHHHHHH-------HHCCSCEEEECSSHHHHHHHHHHHHHH
T ss_pred cceeeeEEeCCHHHHHHHHHHHHH-------hCCCCeEEEEeCCHHHHHHHHHHHHHc
Confidence 346677777888999999999994 345679999999999999999999865
|
| >2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A | Back alignment and structure |
|---|
Probab=91.11 E-value=1.6 Score=48.82 Aligned_cols=144 Identities=15% Similarity=0.079 Sum_probs=71.1
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHHhhhcCCceeEEeeCCCch
Q psy15524 19 DGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKM 98 (930)
Q Consensus 19 ~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~ 98 (930)
.|.-+++.|++|+|||...+--+...... .|..++|++.... ..|+..++........... ...|.-..
T Consensus 202 ~G~liiI~G~pG~GKTtl~l~ia~~~~~~--------~g~~Vl~~s~E~s-~~~l~~r~~~~~~~~~~~~--l~~g~l~~ 270 (454)
T 2r6a_A 202 RSDLIIVAARPSVGKTAFALNIAQNVATK--------TNENVAIFSLEMS-AQQLVMRMLCAEGNINAQN--LRTGKLTP 270 (454)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHHHHHH--------SSCCEEEEESSSC-HHHHHHHHHHHHHTCCHHH--HHTSCCCH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHh--------CCCcEEEEECCCC-HHHHHHHHHHHHcCCCHHH--HhcCCCCH
Confidence 45569999999999997544444333321 1334788774432 2344444322111111000 01121121
Q ss_pred HHHH------HHhcCCCcEEEE-----ChHHHHHHHhcCCCccCCCccEEEEccccccccc-----CcHHHHHHHHHHHh
Q psy15524 99 KSEK------ARIRKGISILVA-----TPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQ-----GYERDIAEFLEILK 162 (930)
Q Consensus 99 ~~~~------~~l~~~~~Ilv~-----Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~-----~~~~~~~~i~~~l~ 162 (930)
..+. ..+. ..++.+- |++.+...+.. ...-.++++||||+.+.+... +....+..+.+.|+
T Consensus 271 ~~~~~~~~a~~~l~-~~~l~i~d~~~~s~~~i~~~~~~--l~~~~~~~livID~l~~~~~~~~~~~~~~~~i~~i~~~Lk 347 (454)
T 2r6a_A 271 EDWGKLTMAMGSLS-NAGIYIDDTPSIRVSDIRAKCRR--LKQESGLGMIVIDYLQLIQGSGRSKENRQQEVSEISRSLK 347 (454)
T ss_dssp HHHHHHHHHHHHHH-SSCEEEECCTTCCHHHHHHHHHH--HHTTTCCCEEEEECGGGSCCSCC----CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh-cCCEEEECCCCCCHHHHHHHHHH--HHHHcCCCEEEEccHHHhccCCCCCCCHHHHHHHHHHHHH
Confidence 2111 1122 2345553 44455443332 111246899999999998743 24455666666665
Q ss_pred hc--CCCceEEEEEee
Q psy15524 163 KQ--KPQFQSILLSAT 176 (930)
Q Consensus 163 ~~--~~~~~~i~lSAT 176 (930)
.. ..++.++++|-.
T Consensus 348 ~lAke~~i~vi~~sql 363 (454)
T 2r6a_A 348 ALARELEVPVIALSQL 363 (454)
T ss_dssp HHHHHHTCCEEEEECC
T ss_pred HHHHHhCCeEEEEecC
Confidence 32 235667777653
|
| >3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=91.11 E-value=0.26 Score=48.22 Aligned_cols=39 Identities=18% Similarity=0.064 Sum_probs=26.5
Q ss_pred CCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCH
Q psy15524 429 GGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTR 476 (930)
Q Consensus 429 ~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~Ptr 476 (930)
|.=.++.++.|||||.. ++-.+.+... .+.+++++.|..
T Consensus 28 G~I~vitG~M~sGKTT~-Llr~~~r~~~--------~g~kvli~kp~~ 66 (219)
T 3e2i_A 28 GWIECITGSMFSGKSEE-LIRRLRRGIY--------AKQKVVVFKPAI 66 (219)
T ss_dssp CEEEEEEECTTSCHHHH-HHHHHHHHHH--------TTCCEEEEEEC-
T ss_pred ceEEEEECCCCCCHHHH-HHHHHHHHHH--------cCCceEEEEecc
Confidence 33468899999999975 4444444433 356789999974
|
| >1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A* | Back alignment and structure |
|---|
Probab=91.10 E-value=6.2 Score=38.98 Aligned_cols=38 Identities=13% Similarity=0.306 Sum_probs=23.1
Q ss_pred cceEEEEecchhhhhcCcHHHHHHHHHHHhhcCccceEEEEc
Q psy15524 542 KVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLS 583 (930)
Q Consensus 542 ~l~~lVlDEah~l~~~g~~~~l~~i~~~l~~~~~~~q~vl~S 583 (930)
.-.+|||||+|.+.. .....++..+........+++.|
T Consensus 126 ~~~vlviDe~~~l~~----~~~~~l~~~l~~~~~~~~~i~~t 163 (250)
T 1njg_A 126 RFKVYLIDEVHMLSR----HSFNALLKTLEEPPEHVKFLLAT 163 (250)
T ss_dssp SSEEEEEETGGGSCH----HHHHHHHHHHHSCCTTEEEEEEE
T ss_pred CceEEEEECcccccH----HHHHHHHHHHhcCCCceEEEEEe
Confidence 456899999998743 34455566665443344444444
|
| >3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=91.07 E-value=0.12 Score=54.12 Aligned_cols=50 Identities=16% Similarity=0.228 Sum_probs=42.9
Q ss_pred CceeEEEEcCcchhHHHHHHHHhhhccccccCCcceEEEEEecccchhhhHHHHhhh
Q psy15524 276 SLKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTK 332 (930)
Q Consensus 276 ~i~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~ 332 (930)
.+.+.++.++...|...|..++.. ..+.++||||++++.++.++..|...
T Consensus 2 ~v~~~~i~~~~~~K~~~L~~ll~~-------~~~~~~LVF~~t~~~~~~l~~~L~~~ 51 (300)
T 3i32_A 2 TYEEEAVPAPVRGRLEVLSDLLYV-------ASPDRAMVFTRTKAETEEIAQGLLRL 51 (300)
T ss_dssp CSEEEEEECCSSSHHHHHHHHHHH-------HCCSSEEEECSSHHHHHHHHHHHHTT
T ss_pred ceEEEEEECCHHHHHHHHHHHHHh-------cCCCCEEEEECCHHHHHHHHHHHHhC
Confidence 367888889999999999999943 34789999999999999999999764
|
| >2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=91.06 E-value=0.79 Score=49.84 Aligned_cols=19 Identities=32% Similarity=0.403 Sum_probs=16.1
Q ss_pred CCcEEEEcCCCChHHHHHH
Q psy15524 20 GGDVLVRSQTGSGKTLAYA 38 (930)
Q Consensus 20 g~~~lv~apTGsGKT~~~~ 38 (930)
+.+++++||+|+|||...-
T Consensus 44 ~~~vll~G~~G~GKT~l~~ 62 (387)
T 2v1u_A 44 PSNALLYGLTGTGKTAVAR 62 (387)
T ss_dssp CCCEEECBCTTSSHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHH
Confidence 4579999999999998643
|
| >4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=90.86 E-value=2 Score=46.59 Aligned_cols=53 Identities=23% Similarity=0.399 Sum_probs=30.6
Q ss_pred CCCCCCCCCCCHHHHHHHHhcCC--CCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHH
Q psy15524 389 PTSYEEFPGIHPFMKKNLNEGMN--ITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLA 445 (930)
Q Consensus 389 ~~~f~~l~~l~~~~~~~l~~~~~--~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~ 445 (930)
..+|+++.|+ ...++.|.+..- +..|--++...++ -.+.+++.+|+|+|||+.
T Consensus 144 ~v~~~dIgGl-~~~k~~l~e~v~~Pl~~pe~f~~~gi~---~prGvLL~GPPGTGKTll 198 (405)
T 4b4t_J 144 DSTYDMVGGL-TKQIKEIKEVIELPVKHPELFESLGIA---QPKGVILYGPPGTGKTLL 198 (405)
T ss_dssp SCCGGGSCSC-HHHHHHHHHHTHHHHHCHHHHHHHTCC---CCCCEEEESCSSSSHHHH
T ss_pred CCCHHHhCCH-HHHHHHHHHHHHHHHhCHHHHHhCCCC---CCCceEEeCCCCCCHHHH
Confidence 4679999666 445555544211 1112112221111 237799999999999986
|
| >1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A* | Back alignment and structure |
|---|
Probab=90.78 E-value=0.49 Score=45.72 Aligned_cols=141 Identities=16% Similarity=0.170 Sum_probs=72.3
Q ss_pred CcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHH-HHHHHHHHHHHhhccCCCcceE--EEeCCCc
Q psy15524 430 GDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRE-LALQTLEIFTKLCKSFTWIVPS--WLTGGEK 506 (930)
Q Consensus 430 ~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~Ptre-La~Q~~~~~~~~~~~~~~~~~~--~~~gg~~ 506 (930)
..+++..++|.|||.+++--++..+.. |.+|+|+.=.+. .-.-=.+.+..+. ..+...+ +......
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g~---------G~rV~~vQF~Kg~~~~gE~~~l~~L~--v~~~~~g~gf~~~~~~ 97 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVGH---------GKNVGVVQFIKGTWPNGERNLLEPHG--VEFQVMATGFTWETQN 97 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHHT---------TCCEEEEESSCCSSCCHHHHHHGGGT--CEEEECCTTCCCCGGG
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHC---------CCeEEEEEeeCCCCCccHHHHHHhCC--cEEEEcccccccCCCC
Confidence 469999999999999987777777643 778888842221 0000001122221 1100000 0000000
Q ss_pred hHHHHHHHhcCCcEEEECchhHHHhhhccCCcccccceEEEEecchhhhhcCcHHHHHHHHHHHhhcCccceEEEEcccc
Q psy15524 507 MKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATL 586 (930)
Q Consensus 507 ~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~l~~~g~~~~l~~i~~~l~~~~~~~q~vl~SAT~ 586 (930)
...+.... ...++.... .+.-..+++||+||+=..+..|+-. ...+++.+...+...-+|+.+--.
T Consensus 98 ~~~~~~~a-----------~~~l~~a~~--~l~~~~yDlvILDEi~~al~~g~l~-~~ev~~~l~~Rp~~~~vIlTGr~a 163 (196)
T 1g5t_A 98 READTAAC-----------MAVWQHGKR--MLADPLLDMVVLDELTYMVAYDYLP-LEEVISALNARPGHQTVIITGRGC 163 (196)
T ss_dssp HHHHHHHH-----------HHHHHHHHH--HTTCTTCSEEEEETHHHHHHTTSSC-HHHHHHHHHTSCTTCEEEEECSSC
T ss_pred cHHHHHHH-----------HHHHHHHHH--HHhcCCCCEEEEeCCCccccCCCCC-HHHHHHHHHhCcCCCEEEEECCCC
Confidence 01111110 111111111 1122568999999998766666432 234566666655566667777777
Q ss_pred CHHHHHHHh
Q psy15524 587 TPAVQRLAG 595 (930)
Q Consensus 587 ~~~~~~l~~ 595 (930)
|+++.+++.
T Consensus 164 p~~l~e~AD 172 (196)
T 1g5t_A 164 HRDILDLAD 172 (196)
T ss_dssp CHHHHHHCS
T ss_pred cHHHHHhCc
Confidence 777776654
|
| >1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A* | Back alignment and structure |
|---|
Probab=90.56 E-value=0.58 Score=45.18 Aligned_cols=36 Identities=22% Similarity=0.210 Sum_probs=29.6
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcc
Q psy15524 21 GDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILP 65 (930)
Q Consensus 21 ~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P 65 (930)
..+++..++|.|||.+++--++..+.. |.+++|+.-
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g~---------G~rV~~vQF 64 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVGH---------GKNVGVVQF 64 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHHT---------TCCEEEEES
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHC---------CCeEEEEEe
Confidence 379999999999999988888887755 566888853
|
| >3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A | Back alignment and structure |
|---|
Probab=90.51 E-value=1.3 Score=48.84 Aligned_cols=52 Identities=21% Similarity=0.385 Sum_probs=32.6
Q ss_pred ccceEEEEecchhhh---hcCcHHHHHHHHHHHhhcCccceEEEEccccCHHHHHHHh
Q psy15524 541 SKVEHLVLDEADRIL---DQGYERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAG 595 (930)
Q Consensus 541 ~~l~~lVlDEah~l~---~~g~~~~l~~i~~~l~~~~~~~q~vl~SAT~~~~~~~l~~ 595 (930)
...+++|+|++-++. +..+...+..+...+. +..-++.++|+........+.
T Consensus 178 ~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~---pd~vlLVlDa~~gq~a~~~a~ 232 (433)
T 3kl4_A 178 NKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLK---PDDVILVIDASIGQKAYDLAS 232 (433)
T ss_dssp TTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHC---CSEEEEEEEGGGGGGGHHHHH
T ss_pred cCCCEEEEECCCCccccCCHHHHHHHHHHHHhhC---CcceEEEEeCccchHHHHHHH
Confidence 468899999998753 3334455555555553 455667788887654444443
|
| >4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=90.45 E-value=1.1 Score=49.20 Aligned_cols=53 Identities=21% Similarity=0.395 Sum_probs=31.3
Q ss_pred CCCCCCCCCCCHHHHHHHHhcC--CCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHH
Q psy15524 389 PTSYEEFPGIHPFMKKNLNEGM--NITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLA 445 (930)
Q Consensus 389 ~~~f~~l~~l~~~~~~~l~~~~--~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~ 445 (930)
..+|+++.|+ +..++.|.+.. .+..|--++...++ -.+.+++.+|+|+|||+.
T Consensus 177 ~~t~~digGl-~~~k~~l~e~v~~pl~~pe~f~~~g~~---~prGvLLyGPPGTGKTll 231 (434)
T 4b4t_M 177 TETYSDVGGL-DKQIEELVEAIVLPMKRADKFKDMGIR---APKGALMYGPPGTGKTLL 231 (434)
T ss_dssp SCCGGGSCSC-HHHHHHHHHHTHHHHHCSHHHHHHCCC---CCCEEEEESCTTSSHHHH
T ss_pred CCChHhcCcH-HHHHHHHHHHHHHHHhCHHHHHhCCCC---CCCeeEEECcCCCCHHHH
Confidence 4579999444 55566655321 11222222222221 146799999999999986
|
| >3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A | Back alignment and structure |
|---|
Probab=90.36 E-value=0.65 Score=46.54 Aligned_cols=19 Identities=16% Similarity=0.129 Sum_probs=16.3
Q ss_pred CCcEEEEcCCCChHHHHHH
Q psy15524 20 GGDVLVRSQTGSGKTLAYA 38 (930)
Q Consensus 20 g~~~lv~apTGsGKT~~~~ 38 (930)
+..++++||+|+|||....
T Consensus 52 ~~~~ll~G~~G~GKT~la~ 70 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIH 70 (242)
T ss_dssp CSEEEEECSTTSSHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 5789999999999998643
|
| >1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=90.35 E-value=2.2 Score=44.97 Aligned_cols=39 Identities=18% Similarity=0.245 Sum_probs=23.9
Q ss_pred ccceEEEEecchhhhhcCcHHHHHHHHHHHhhcCccceEEEEc
Q psy15524 541 SKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLS 583 (930)
Q Consensus 541 ~~l~~lVlDEah~l~~~g~~~~l~~i~~~l~~~~~~~q~vl~S 583 (930)
.+-.++|+||+|.+... ....++..+........+++.+
T Consensus 109 ~~~~vliiDe~~~l~~~----~~~~L~~~le~~~~~~~~i~~~ 147 (327)
T 1iqp_A 109 ASFKIIFLDEADALTQD----AQQALRRTMEMFSSNVRFILSC 147 (327)
T ss_dssp CSCEEEEEETGGGSCHH----HHHHHHHHHHHTTTTEEEEEEE
T ss_pred CCCeEEEEeCCCcCCHH----HHHHHHHHHHhcCCCCeEEEEe
Confidence 45679999999988542 3344555555444455555543
|
| >2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens} | Back alignment and structure |
|---|
Probab=90.23 E-value=1.2 Score=45.27 Aligned_cols=18 Identities=33% Similarity=0.390 Sum_probs=15.2
Q ss_pred CCcEEEEccCCCchhHHh
Q psy15524 429 GGDVLVRSQTGSGKTLAY 446 (930)
Q Consensus 429 ~~d~lv~a~TGsGKTl~~ 446 (930)
.+.+++.+|+|+|||..+
T Consensus 39 ~~~vll~G~~GtGKT~la 56 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLA 56 (262)
T ss_dssp CCEEEEESCTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 356999999999999853
|
| >3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=89.97 E-value=0.5 Score=49.09 Aligned_cols=20 Identities=30% Similarity=0.413 Sum_probs=16.5
Q ss_pred cCCcEEEEcCCCChHHHHHH
Q psy15524 19 DGGDVLVRSQTGSGKTLAYA 38 (930)
Q Consensus 19 ~g~~~lv~apTGsGKT~~~~ 38 (930)
.+.++++++|+|+|||...-
T Consensus 50 ~~~~~ll~G~~GtGKT~la~ 69 (285)
T 3h4m_A 50 PPKGILLYGPPGTGKTLLAK 69 (285)
T ss_dssp CCSEEEEESSSSSSHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHH
Confidence 35679999999999998643
|
| >1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=89.96 E-value=1.4 Score=47.07 Aligned_cols=38 Identities=16% Similarity=0.216 Sum_probs=23.1
Q ss_pred cceEEEEecchhhhhcCcHHHHHHHHHHHhhcCccceEEEEc
Q psy15524 542 KVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLS 583 (930)
Q Consensus 542 ~l~~lVlDEah~l~~~g~~~~l~~i~~~l~~~~~~~q~vl~S 583 (930)
...++++||+|.+... ....++..+........+++.+
T Consensus 133 ~~~vliiDE~~~l~~~----~~~~Ll~~le~~~~~~~~il~~ 170 (353)
T 1sxj_D 133 PYKIIILDEADSMTAD----AQSALRRTMETYSGVTRFCLIC 170 (353)
T ss_dssp SCEEEEETTGGGSCHH----HHHHHHHHHHHTTTTEEEEEEE
T ss_pred CceEEEEECCCccCHH----HHHHHHHHHHhcCCCceEEEEe
Confidence 4579999999988642 2344455555443455555544
|
| >2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=89.73 E-value=1.6 Score=47.19 Aligned_cols=25 Identities=28% Similarity=0.458 Sum_probs=18.0
Q ss_pred CCcEEEEccCCCchhHHhhHHHHHHH
Q psy15524 429 GGDVLVRSQTGSGKTLAYAIPIIQKL 454 (930)
Q Consensus 429 ~~d~lv~a~TGsGKTl~~~lp~l~~l 454 (930)
+..+++.+|+|+|||... -.+...+
T Consensus 45 ~~~vli~G~~G~GKTtl~-~~l~~~~ 69 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVV-KFVLSKL 69 (386)
T ss_dssp CCCEEEEECTTSSHHHHH-HHHHHHH
T ss_pred CCeEEEECCCCCCHHHHH-HHHHHHH
Confidence 456999999999999863 2344433
|
| >3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=89.73 E-value=2.5 Score=44.89 Aligned_cols=17 Identities=29% Similarity=0.401 Sum_probs=14.9
Q ss_pred CcEEEEccCCCchhHHh
Q psy15524 430 GDVLVRSQTGSGKTLAY 446 (930)
Q Consensus 430 ~d~lv~a~TGsGKTl~~ 446 (930)
..+++.+|+|+|||..+
T Consensus 56 ~~vll~G~~GtGKT~la 72 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLA 72 (338)
T ss_dssp CCEEEECSTTSSHHHHH
T ss_pred CeEEEECcCCCCHHHHH
Confidence 46999999999999863
|
| >1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 | Back alignment and structure |
|---|
Probab=89.68 E-value=1.5 Score=47.65 Aligned_cols=16 Identities=25% Similarity=0.478 Sum_probs=14.3
Q ss_pred cEEEEccCCCchhHHh
Q psy15524 431 DVLVRSQTGSGKTLAY 446 (930)
Q Consensus 431 d~lv~a~TGsGKTl~~ 446 (930)
.+++.||+|+|||...
T Consensus 46 ~~li~G~~G~GKTtl~ 61 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTL 61 (389)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 6999999999999863
|
| >2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3} | Back alignment and structure |
|---|
Probab=89.50 E-value=1.1 Score=47.26 Aligned_cols=26 Identities=19% Similarity=0.340 Sum_probs=18.8
Q ss_pred CCcEEEEccCCCchhHHhhHHHHHHHH
Q psy15524 429 GGDVLVRSQTGSGKTLAYAIPIIQKLQ 455 (930)
Q Consensus 429 ~~d~lv~a~TGsGKTl~~~lp~l~~l~ 455 (930)
++.+++.+|+|+|||..+. .+...+.
T Consensus 152 ~~~lll~G~~GtGKT~La~-aia~~~~ 177 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLA-AMAHELS 177 (308)
T ss_dssp CCEEEEECSTTSSHHHHHH-HHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH-HHHHHHH
Confidence 5789999999999998643 3444443
|
| >1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=89.49 E-value=1.5 Score=47.10 Aligned_cols=45 Identities=18% Similarity=0.233 Sum_probs=28.0
Q ss_pred CCCCCCCCCCCCCHHHHHHHHhcCCCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHH
Q psy15524 387 FAPTSYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLA 445 (930)
Q Consensus 387 ~~~~~f~~l~~l~~~~~~~l~~~~~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~ 445 (930)
+.+.+|+++ --++.+.+.+.+... . .-....+++.+|+|+|||..
T Consensus 8 yrP~~~~~~-vg~~~~~~~l~~~~~-~------------~~~~~~~ll~Gp~G~GKTtl 52 (354)
T 1sxj_E 8 YRPKSLNAL-SHNEELTNFLKSLSD-Q------------PRDLPHLLLYGPNGTGKKTR 52 (354)
T ss_dssp TCCCSGGGC-CSCHHHHHHHHTTTT-C------------TTCCCCEEEECSTTSSHHHH
T ss_pred cCCCCHHHh-cCCHHHHHHHHHHHh-h------------CCCCCeEEEECCCCCCHHHH
Confidence 345667777 446666666653210 0 00123499999999999985
|
| >2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=89.44 E-value=0.55 Score=51.19 Aligned_cols=24 Identities=29% Similarity=0.299 Sum_probs=17.5
Q ss_pred CcEEEEccCCCchhHHhhHHHHHHH
Q psy15524 430 GDVLVRSQTGSGKTLAYAIPIIQKL 454 (930)
Q Consensus 430 ~d~lv~a~TGsGKTl~~~lp~l~~l 454 (930)
..+++.+|+|+|||... -.+.+.+
T Consensus 46 ~~vll~G~~G~GKT~la-~~l~~~~ 69 (384)
T 2qby_B 46 FSNLFLGLTGTGKTFVS-KYIFNEI 69 (384)
T ss_dssp CEEEEEECTTSSHHHHH-HHHHHHH
T ss_pred CcEEEECCCCCCHHHHH-HHHHHHH
Confidence 45999999999999863 3344444
|
| >2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A* | Back alignment and structure |
|---|
Probab=89.34 E-value=0.64 Score=45.57 Aligned_cols=37 Identities=14% Similarity=0.092 Sum_probs=25.6
Q ss_pred EEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHH
Q psy15524 23 VLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRE 68 (930)
Q Consensus 23 ~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~ 68 (930)
.++.+|-|+|||...+--+.+.... +.+++++-|.+.
T Consensus 31 ~vitG~MgsGKTT~lL~~a~r~~~~---------g~kVli~k~~~d 67 (214)
T 2j9r_A 31 EVICGSMFSGKSEELIRRVRRTQFA---------KQHAIVFKPCID 67 (214)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHHHT---------TCCEEEEECC--
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHC---------CCEEEEEEeccC
Confidence 5678888999998766555554433 456999999874
|
| >1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A* | Back alignment and structure |
|---|
Probab=89.22 E-value=1.9 Score=44.20 Aligned_cols=19 Identities=37% Similarity=0.281 Sum_probs=15.9
Q ss_pred CcEEEEcCCCChHHHHHHH
Q psy15524 21 GDVLVRSQTGSGKTLAYAI 39 (930)
Q Consensus 21 ~~~lv~apTGsGKT~~~~l 39 (930)
.++++++|+|+|||..+..
T Consensus 65 ~~vLl~G~~GtGKT~la~~ 83 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALAAK 83 (272)
T ss_dssp EEEEEECSTTSSHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHH
Confidence 4699999999999986543
|
| >2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=89.20 E-value=1.8 Score=43.54 Aligned_cols=50 Identities=20% Similarity=0.218 Sum_probs=30.6
Q ss_pred cCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHHH
Q psy15524 428 DGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFT 487 (930)
Q Consensus 428 ~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~ 487 (930)
.|.-+++.+|+|+|||...+--+...+. .+..++++.-. +-..++.+.+.
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~~~---------~~~~v~~~~~e-~~~~~~~~~~~ 71 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNGLK---------MGEPGIYVALE-EHPVQVRQNMA 71 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHHHH---------TTCCEEEEESS-SCHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHh---------cCCeEEEEEcc-CCHHHHHHHHH
Confidence 4566899999999999864433333332 24557777643 33455555554
|
| >2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=88.96 E-value=0.72 Score=50.19 Aligned_cols=19 Identities=32% Similarity=0.272 Sum_probs=15.8
Q ss_pred CCcEEEEcCCCChHHHHHH
Q psy15524 20 GGDVLVRSQTGSGKTLAYA 38 (930)
Q Consensus 20 g~~~lv~apTGsGKT~~~~ 38 (930)
+..+++++|+|+|||....
T Consensus 45 ~~~vll~G~~G~GKT~la~ 63 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVSK 63 (384)
T ss_dssp CCEEEEEECTTSSHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHH
Confidence 3469999999999998643
|
| >2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2} | Back alignment and structure |
|---|
Probab=88.89 E-value=0.81 Score=45.60 Aligned_cols=21 Identities=24% Similarity=0.305 Sum_probs=16.7
Q ss_pred cCCcEEEEcCCCChHHHHHHH
Q psy15524 19 DGGDVLVRSQTGSGKTLAYAI 39 (930)
Q Consensus 19 ~g~~~lv~apTGsGKT~~~~l 39 (930)
.|.-+++.+|+|+|||.....
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~ 42 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSLH 42 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHH
Confidence 456799999999999975433
|
| >2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A | Back alignment and structure |
|---|
Probab=88.86 E-value=1.1 Score=49.84 Aligned_cols=18 Identities=22% Similarity=0.318 Sum_probs=15.4
Q ss_pred CCcEEEEccCCCchhHHh
Q psy15524 429 GGDVLVRSQTGSGKTLAY 446 (930)
Q Consensus 429 ~~d~lv~a~TGsGKTl~~ 446 (930)
.+.+++.+|+|+|||..+
T Consensus 167 ~~~vLL~GppGtGKT~lA 184 (444)
T 2zan_A 167 WRGILLFGPPGTGKSYLA 184 (444)
T ss_dssp CSEEEEECSTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 367999999999999863
|
| >2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens} | Back alignment and structure |
|---|
Probab=88.83 E-value=2.1 Score=43.41 Aligned_cols=18 Identities=33% Similarity=0.412 Sum_probs=15.3
Q ss_pred CcEEEEcCCCChHHHHHH
Q psy15524 21 GDVLVRSQTGSGKTLAYA 38 (930)
Q Consensus 21 ~~~lv~apTGsGKT~~~~ 38 (930)
+.+++++|+|+|||...-
T Consensus 40 ~~vll~G~~GtGKT~la~ 57 (262)
T 2qz4_A 40 KGALLLGPPGCGKTLLAK 57 (262)
T ss_dssp CEEEEESCTTSSHHHHHH
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 469999999999998643
|
| >2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus} | Back alignment and structure |
|---|
Probab=88.76 E-value=3.4 Score=45.86 Aligned_cols=143 Identities=17% Similarity=0.110 Sum_probs=67.6
Q ss_pred cCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHHHHhhccCCCcceEEEeCCCch
Q psy15524 428 DGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKM 507 (930)
Q Consensus 428 ~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~ 507 (930)
.|.=+++.|++|+|||... +-+...+.. ..|..+++++.- .-..|+...+........... ...| .-.
T Consensus 199 ~G~l~ii~G~pg~GKT~la-l~ia~~~a~-------~~g~~vl~~slE-~~~~~l~~R~~~~~~~i~~~~--l~~g-~l~ 266 (444)
T 2q6t_A 199 PGSLNIIAARPAMGKTAFA-LTIAQNAAL-------KEGVGVGIYSLE-MPAAQLTLRMMCSEARIDMNR--VRLG-QLT 266 (444)
T ss_dssp TTCEEEEEECTTSCHHHHH-HHHHHHHHH-------TTCCCEEEEESS-SCHHHHHHHHHHHHTTCCTTT--CCGG-GCC
T ss_pred CCcEEEEEeCCCCCHHHHH-HHHHHHHHH-------hCCCeEEEEECC-CCHHHHHHHHHHHHcCCCHHH--HhCC-CCC
Confidence 4555899999999999754 444333332 125567887653 223344444332221111100 0111 111
Q ss_pred HHHHHHH------hcCCcEEEEC-----chhHHHhhhccCCcccccceEEEEecchhhhhc--C-----cHHHHHHHHHH
Q psy15524 508 KSEKARI------RKGISILVAT-----PGRLLDHCKHTETLKFSKVEHLVLDEADRILDQ--G-----YERDIAEFLEI 569 (930)
Q Consensus 508 ~~~~~~~------~~~~~Ilv~T-----p~rl~~~l~~~~~~~~~~l~~lVlDEah~l~~~--g-----~~~~l~~i~~~ 569 (930)
..++.++ .....+.+-. ++.+...++.. ..-..+++||||..+.+... + ....+..+.+.
T Consensus 267 ~~~~~~~~~a~~~l~~~~l~i~d~~~~s~~~l~~~~~~l--~~~~~~~lIvID~l~~~~~~~~~~~~~~r~~~i~~i~~~ 344 (444)
T 2q6t_A 267 DRDFSRLVDVASRLSEAPIYIDDTPDLTLMEVRARARRL--VSQNQVGLIIIDYLQLMSGPGSGKSGENRQQEIAAISRG 344 (444)
T ss_dssp HHHHHHHHHHHHHHHTSCEEEECCTTCBHHHHHHHHHHH--HHHSCCCEEEEECGGGCBCC-------CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHH--HHHcCCCEEEEcChhhcCCCcCCCCCCCHHHHHHHHHHH
Confidence 2222221 1234566542 33343333321 11135899999999988643 2 22344555555
Q ss_pred HhhcC--ccceEEEEcc
Q psy15524 570 LKKQK--PQFQSILLSA 584 (930)
Q Consensus 570 l~~~~--~~~q~vl~SA 584 (930)
|+... -++.++++|-
T Consensus 345 Lk~lAke~~v~vi~lsq 361 (444)
T 2q6t_A 345 LKALARELGIPIIALSQ 361 (444)
T ss_dssp HHHHHHHHTSCEEEEEE
T ss_pred HHHHHHHhCCeEEEEec
Confidence 54321 1455566553
|
| >1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A* | Back alignment and structure |
|---|
Probab=88.75 E-value=1.3 Score=42.75 Aligned_cols=38 Identities=13% Similarity=0.020 Sum_probs=26.4
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEccc
Q psy15524 20 GGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPT 66 (930)
Q Consensus 20 g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~ 66 (930)
|+=.++.+|.|+|||.-.+-.+-+...+ +.+++++.|.
T Consensus 20 g~l~fiyG~MgsGKTt~Ll~~i~n~~~~---------~~kvl~~kp~ 57 (195)
T 1w4r_A 20 GQIQVILGPMFSGKSTELMRRVRRFQIA---------QYKCLVIKYA 57 (195)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHHHT---------TCCEEEEEET
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHc---------CCeEEEEccc
Confidence 4558899999999996544444444332 3458999887
|
| >2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A | Back alignment and structure |
|---|
Probab=88.64 E-value=3.4 Score=46.08 Aligned_cols=143 Identities=15% Similarity=0.119 Sum_probs=67.0
Q ss_pred cCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHHHHhhccCCCcceEEEeCCCch
Q psy15524 428 DGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKM 507 (930)
Q Consensus 428 ~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~ 507 (930)
.|.=+++.|++|+|||...+--+...... .|..++|++.-.. ..|+...+.......... ....|.-.
T Consensus 202 ~G~liiI~G~pG~GKTtl~l~ia~~~~~~--------~g~~Vl~~s~E~s-~~~l~~r~~~~~~~~~~~--~l~~g~l~- 269 (454)
T 2r6a_A 202 RSDLIIVAARPSVGKTAFALNIAQNVATK--------TNENVAIFSLEMS-AQQLVMRMLCAEGNINAQ--NLRTGKLT- 269 (454)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHHHHHH--------SSCCEEEEESSSC-HHHHHHHHHHHHHTCCHH--HHHTSCCC-
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHh--------CCCcEEEEECCCC-HHHHHHHHHHHHcCCCHH--HHhcCCCC-
Confidence 45568999999999997544333333221 2456788774321 234444332111011100 00111111
Q ss_pred HHHHHHH------hcCCcEEEECc-----hhHHHhhhccCCcccccceEEEEecchhhhhcC-----cHHHHHHHHHHHh
Q psy15524 508 KSEKARI------RKGISILVATP-----GRLLDHCKHTETLKFSKVEHLVLDEADRILDQG-----YERDIAEFLEILK 571 (930)
Q Consensus 508 ~~~~~~~------~~~~~Ilv~Tp-----~rl~~~l~~~~~~~~~~l~~lVlDEah~l~~~g-----~~~~l~~i~~~l~ 571 (930)
..++.++ ....++.+..+ +.+...++.. ..-..+++||||+.+.+...+ ....+..+.+.|+
T Consensus 270 ~~~~~~~~~a~~~l~~~~l~i~d~~~~s~~~i~~~~~~l--~~~~~~~livID~l~~~~~~~~~~~~~~~~i~~i~~~Lk 347 (454)
T 2r6a_A 270 PEDWGKLTMAMGSLSNAGIYIDDTPSIRVSDIRAKCRRL--KQESGLGMIVIDYLQLIQGSGRSKENRQQEVSEISRSLK 347 (454)
T ss_dssp HHHHHHHHHHHHHHHSSCEEEECCTTCCHHHHHHHHHHH--HTTTCCCEEEEECGGGSCCSCC----CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHH--HHHcCCCEEEEccHHHhccCCCCCCCHHHHHHHHHHHHH
Confidence 1222211 12345666433 3343333321 111358999999999887432 3345555555554
Q ss_pred hcC--ccceEEEEcc
Q psy15524 572 KQK--PQFQSILLSA 584 (930)
Q Consensus 572 ~~~--~~~q~vl~SA 584 (930)
... .++.++++|-
T Consensus 348 ~lAke~~i~vi~~sq 362 (454)
T 2r6a_A 348 ALARELEVPVIALSQ 362 (454)
T ss_dssp HHHHHHTCCEEEEEC
T ss_pred HHHHHhCCeEEEEec
Confidence 321 1445555543
|
| >2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus} | Back alignment and structure |
|---|
Probab=88.60 E-value=1.3 Score=49.24 Aligned_cols=143 Identities=15% Similarity=0.052 Sum_probs=71.8
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHHhhhcCCceeEEeeCCCchH
Q psy15524 20 GGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMK 99 (930)
Q Consensus 20 g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~ 99 (930)
|.-+++.|++|+|||...+--+. .+... .+..+++++.... ..|+..++........... ...|.-...
T Consensus 200 G~l~ii~G~pg~GKT~lal~ia~-~~a~~-------~g~~vl~~slE~~-~~~l~~R~~~~~~~i~~~~--l~~g~l~~~ 268 (444)
T 2q6t_A 200 GSLNIIAARPAMGKTAFALTIAQ-NAALK-------EGVGVGIYSLEMP-AAQLTLRMMCSEARIDMNR--VRLGQLTDR 268 (444)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHH-HHHHT-------TCCCEEEEESSSC-HHHHHHHHHHHHTTCCTTT--CCGGGCCHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHH-HHHHh-------CCCeEEEEECCCC-HHHHHHHHHHHHcCCCHHH--HhCCCCCHH
Confidence 44589999999999975444333 33321 1334787775422 3345555433222211111 111222222
Q ss_pred HHHH------HhcCCCcEEEE-----ChHHHHHHHhcCCCccCCCccEEEEccccccccc-------CcHHHHHHHHHHH
Q psy15524 100 SEKA------RIRKGISILVA-----TPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQ-------GYERDIAEFLEIL 161 (930)
Q Consensus 100 ~~~~------~l~~~~~Ilv~-----Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~-------~~~~~~~~i~~~l 161 (930)
.+.. .+.. .++.+- |++.+...+.. ...-.++++||||..+.+... .....+..+...|
T Consensus 269 ~~~~~~~a~~~l~~-~~l~i~d~~~~s~~~l~~~~~~--l~~~~~~~lIvID~l~~~~~~~~~~~~~~r~~~i~~i~~~L 345 (444)
T 2q6t_A 269 DFSRLVDVASRLSE-APIYIDDTPDLTLMEVRARARR--LVSQNQVGLIIIDYLQLMSGPGSGKSGENRQQEIAAISRGL 345 (444)
T ss_dssp HHHHHHHHHHHHHT-SCEEEECCTTCBHHHHHHHHHH--HHHHSCCCEEEEECGGGCBCC-------CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc-CCEEEECCCCCCHHHHHHHHHH--HHHHcCCCEEEEcChhhcCCCcCCCCCCCHHHHHHHHHHHH
Confidence 2111 1222 345553 44555443332 111136899999999998753 2234556666666
Q ss_pred hhc--CCCceEEEEEee
Q psy15524 162 KKQ--KPQFQSILLSAT 176 (930)
Q Consensus 162 ~~~--~~~~~~i~lSAT 176 (930)
+.. ..++.++++|-.
T Consensus 346 k~lAke~~v~vi~lsql 362 (444)
T 2q6t_A 346 KALARELGIPIIALSQL 362 (444)
T ss_dssp HHHHHHHTSCEEEEEEC
T ss_pred HHHHHHhCCeEEEEecC
Confidence 542 235678877754
|
| >2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2} | Back alignment and structure |
|---|
Probab=88.59 E-value=0.87 Score=45.38 Aligned_cols=19 Identities=26% Similarity=0.396 Sum_probs=15.6
Q ss_pred cCCcEEEEccCCCchhHHh
Q psy15524 428 DGGDVLVRSQTGSGKTLAY 446 (930)
Q Consensus 428 ~~~d~lv~a~TGsGKTl~~ 446 (930)
.|.-+++.+|+|+|||...
T Consensus 22 ~G~~~~i~G~~GsGKTtl~ 40 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFS 40 (235)
T ss_dssp TTCEEEEECSTTSSHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHH
Confidence 4566889999999999753
|
| >3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C | Back alignment and structure |
|---|
Probab=88.42 E-value=1.9 Score=45.53 Aligned_cols=18 Identities=22% Similarity=0.436 Sum_probs=15.5
Q ss_pred CcEEEEcCCCChHHHHHH
Q psy15524 21 GDVLVRSQTGSGKTLAYA 38 (930)
Q Consensus 21 ~~~lv~apTGsGKT~~~~ 38 (930)
+++|+++|+|+|||...-
T Consensus 52 ~~vLl~GppGtGKT~la~ 69 (322)
T 3eie_A 52 SGILLYGPPGTGKSYLAK 69 (322)
T ss_dssp CEEEEECSSSSCHHHHHH
T ss_pred CeEEEECCCCCcHHHHHH
Confidence 469999999999998643
|
| >4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=88.23 E-value=0.49 Score=50.31 Aligned_cols=144 Identities=13% Similarity=0.018 Sum_probs=71.8
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHHhhhcCCceeEEeeCCCch
Q psy15524 19 DGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKM 98 (930)
Q Consensus 19 ~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~ 98 (930)
.|.=+++.|++|+|||...+--+. .+.. .+..++|++.... ..|+..++.......+... ...|.-..
T Consensus 45 ~G~LiiIaG~pG~GKTt~al~ia~-~~a~--------~g~~Vl~fSlEms-~~ql~~Rlls~~~~v~~~~--l~~g~Ls~ 112 (338)
T 4a1f_A 45 KGSLVIIGARPSMGKTSLMMNMVL-SALN--------DDRGVAVFSLEMS-AEQLALRALSDLTSINMHD--LESGRLDD 112 (338)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHH-HHHH--------TTCEEEEEESSSC-HHHHHHHHHHHHHCCCHHH--HHHTCCCH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHH-HHHH--------cCCeEEEEeCCCC-HHHHHHHHHHHhhCCCHHH--HhcCCCCH
Confidence 344599999999999975444333 3332 1445788775432 3445555433322211000 01122222
Q ss_pred HHHHH------HhcCCCcEEE-EC----hHHHHHHHhcCCCccCC-CccEEEEcccccccccC----cHHHHHHHHHHHh
Q psy15524 99 KSEKA------RIRKGISILV-AT----PGRLLDHCKHTETLKFS-KVEHLVLDEADRILDQG----YERDIAEFLEILK 162 (930)
Q Consensus 99 ~~~~~------~l~~~~~Ilv-~T----p~~l~~~l~~~~~~~l~-~l~~vViDE~h~~~~~~----~~~~~~~i~~~l~ 162 (930)
.++.. .+. ..++.| -+ +..+...+.+. ..-. .+++||||-.+.|...+ ....+..+.+.|+
T Consensus 113 ~e~~~l~~a~~~l~-~~~l~I~d~~~~si~~i~~~ir~l--~~~~gg~~lIVIDyLqlm~~~~~~~~r~~ei~~isr~LK 189 (338)
T 4a1f_A 113 DQWENLAKCFDHLS-QKKLFFYDKSYVRIEQIRLQLRKL--KSQHKELGIAFIDYLQLMSGSKATKERHEQIAEISRELK 189 (338)
T ss_dssp HHHHHHHHHHHHHH-HSCEEEECCTTCCHHHHHHHHHHH--HHHCTTEEEEEEEEEECCCTHHHHHHCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh-cCCeEEeCCCCCcHHHHHHHHHHH--HHhcCCCCEEEEechHHhcCCCCCCChHHHHHHHHHHHH
Confidence 21111 111 234444 33 34444433320 1112 69999999999886432 2234555665555
Q ss_pred hc--CCCceEEEEEeec
Q psy15524 163 KQ--KPQFQSILLSATL 177 (930)
Q Consensus 163 ~~--~~~~~~i~lSAT~ 177 (930)
.. ..++.++++|-.-
T Consensus 190 ~lAkel~vpVi~lsQl~ 206 (338)
T 4a1f_A 190 TLARELEIPIIALVQLN 206 (338)
T ss_dssp HHHHHHTSCEEEEEECC
T ss_pred HHHHHcCCeEEEEEecC
Confidence 32 2357788887653
|
| >2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14 | Back alignment and structure |
|---|
Probab=88.19 E-value=1.1 Score=44.40 Aligned_cols=40 Identities=13% Similarity=0.064 Sum_probs=27.8
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHH
Q psy15524 20 GGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRE 68 (930)
Q Consensus 20 g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~ 68 (930)
|+=.++.+|-|+|||...+--+.+.... +.+++++-|.+.
T Consensus 19 g~l~v~~G~MgsGKTT~lL~~~~r~~~~---------g~kvli~kp~~D 58 (234)
T 2orv_A 19 GQIQVILGPMFSGKSTELMRRVRRFQIA---------QYKCLVIKYAKD 58 (234)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHHTT---------TCCEEEEEETTC
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHC---------CCeEEEEeecCC
Confidence 4446778888999998765555544432 556899888764
|
| >1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A* | Back alignment and structure |
|---|
Probab=88.19 E-value=5.1 Score=39.63 Aligned_cols=39 Identities=13% Similarity=0.303 Sum_probs=23.9
Q ss_pred CccEEEEcccccccccCcHHHHHHHHHHHhhcCCCceEEEEEe
Q psy15524 133 KVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSA 175 (930)
Q Consensus 133 ~l~~vViDE~h~~~~~~~~~~~~~i~~~l~~~~~~~~~i~lSA 175 (930)
.-.+|||||+|.+.. .....++..+......+.+|+.|.
T Consensus 126 ~~~vlviDe~~~l~~----~~~~~l~~~l~~~~~~~~~i~~t~ 164 (250)
T 1njg_A 126 RFKVYLIDEVHMLSR----HSFNALLKTLEEPPEHVKFLLATT 164 (250)
T ss_dssp SSEEEEEETGGGSCH----HHHHHHHHHHHSCCTTEEEEEEES
T ss_pred CceEEEEECcccccH----HHHHHHHHHHhcCCCceEEEEEeC
Confidence 457899999998743 234455555554444555555553
|
| >2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=87.98 E-value=1.5 Score=41.69 Aligned_cols=18 Identities=22% Similarity=0.340 Sum_probs=15.2
Q ss_pred CCcEEEEccCCCchhHHh
Q psy15524 429 GGDVLVRSQTGSGKTLAY 446 (930)
Q Consensus 429 ~~d~lv~a~TGsGKTl~~ 446 (930)
...+++.+|+|+|||...
T Consensus 43 ~~~vll~G~~G~GKT~la 60 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIV 60 (187)
T ss_dssp SCEEEEESCGGGCHHHHH
T ss_pred CCceEEECCCCCCHHHHH
Confidence 456999999999999753
|
| >2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A | Back alignment and structure |
|---|
Probab=87.94 E-value=0.58 Score=49.40 Aligned_cols=43 Identities=19% Similarity=0.227 Sum_probs=26.1
Q ss_pred CCCCCCCCCCCCHHHHHHHHhcCCCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHH
Q psy15524 388 APTSYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLA 445 (930)
Q Consensus 388 ~~~~f~~l~~l~~~~~~~l~~~~~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~ 445 (930)
.+.+|+++ .-++...+.+.+... . -....+++.||+|+|||..
T Consensus 12 ~p~~~~~~-~g~~~~~~~l~~~l~--~------------~~~~~~ll~G~~G~GKt~l 54 (319)
T 2chq_A 12 RPRTLDEV-VGQDEVIQRLKGYVE--R------------KNIPHLLFSGPPGTGKTAT 54 (319)
T ss_dssp SCSSGGGS-CSCHHHHHHHHTTTT--T------------TCCCCEEEESSSSSSHHHH
T ss_pred CCCCHHHH-hCCHHHHHHHHHHHh--C------------CCCCeEEEECcCCcCHHHH
Confidence 34567777 345556666653211 0 0112499999999999975
|
| >4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=87.77 E-value=3.3 Score=45.43 Aligned_cols=44 Identities=20% Similarity=0.228 Sum_probs=27.3
Q ss_pred ceEEEEecchhhhhcC----------cHHHHHHHHHHHhhcCccceEEEEcccc
Q psy15524 543 VEHLVLDEADRILDQG----------YERDIAEFLEILKKQKPQFQSILLSATL 586 (930)
Q Consensus 543 l~~lVlDEah~l~~~g----------~~~~l~~i~~~l~~~~~~~q~vl~SAT~ 586 (930)
-.++++||+|.+.... ....+..++..+........++++-||-
T Consensus 266 P~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~~v~vI~aTN 319 (428)
T 4b4t_K 266 PSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTNVKVIMATN 319 (428)
T ss_dssp SEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSCSEEEEEEES
T ss_pred CCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCCCEEEEEecC
Confidence 3579999999886321 1245666666666544444566666663
|
| >2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=87.50 E-value=2.3 Score=42.69 Aligned_cols=50 Identities=18% Similarity=0.204 Sum_probs=30.3
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHH
Q psy15524 19 DGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFT 78 (930)
Q Consensus 19 ~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~ 78 (930)
.|.-+++.+|+|+|||...+--+...... +..++++.-.. -..++.+++.
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~~~~---------~~~v~~~~~e~-~~~~~~~~~~ 71 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNGLKM---------GEPGIYVALEE-HPVQVRQNMA 71 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHHHHT---------TCCEEEEESSS-CHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhc---------CCeEEEEEccC-CHHHHHHHHH
Confidence 56679999999999998644433333321 33477776432 2345555544
|
| >1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B* | Back alignment and structure |
|---|
Probab=87.46 E-value=7.6 Score=41.63 Aligned_cols=39 Identities=13% Similarity=0.302 Sum_probs=23.9
Q ss_pred ccceEEEEecchhhhhcCcHHHHHHHHHHHhhcCccceEEEEc
Q psy15524 541 SKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLS 583 (930)
Q Consensus 541 ~~l~~lVlDEah~l~~~g~~~~l~~i~~~l~~~~~~~q~vl~S 583 (930)
..-.++||||+|.+.. .....++..+...+....+++.|
T Consensus 118 ~~~~vliiDe~~~l~~----~~~~~Ll~~le~~~~~~~~Il~~ 156 (373)
T 1jr3_A 118 GRFKVYLIDEVHMLSR----HSFNALLKTLEEPPEHVKFLLAT 156 (373)
T ss_dssp SSSEEEEEECGGGSCH----HHHHHHHHHHHSCCSSEEEEEEE
T ss_pred CCeEEEEEECcchhcH----HHHHHHHHHHhcCCCceEEEEEe
Confidence 4567999999998853 33455566665543344444443
|
| >2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=87.23 E-value=2.6 Score=45.56 Aligned_cols=19 Identities=26% Similarity=0.466 Sum_probs=16.1
Q ss_pred CCcEEEEcCCCChHHHHHH
Q psy15524 20 GGDVLVRSQTGSGKTLAYA 38 (930)
Q Consensus 20 g~~~lv~apTGsGKT~~~~ 38 (930)
+..+++.||+|+|||...-
T Consensus 45 ~~~vli~G~~G~GKTtl~~ 63 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVK 63 (386)
T ss_dssp CCCEEEEECTTSSHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 4579999999999998643
|
| >1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=87.15 E-value=1.5 Score=46.20 Aligned_cols=38 Identities=16% Similarity=0.156 Sum_probs=23.4
Q ss_pred cceEEEEecchhhhhcCcHHHHHHHHHHHhhcCccceEEEEc
Q psy15524 542 KVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLS 583 (930)
Q Consensus 542 ~l~~lVlDEah~l~~~g~~~~l~~i~~~l~~~~~~~q~vl~S 583 (930)
+-.++||||+|.+... ....++..+....+...+++.|
T Consensus 107 ~~~viiiDe~~~l~~~----~~~~L~~~le~~~~~~~~il~~ 144 (323)
T 1sxj_B 107 KHKIVILDEADSMTAG----AQQALRRTMELYSNSTRFAFAC 144 (323)
T ss_dssp CCEEEEEESGGGSCHH----HHHTTHHHHHHTTTTEEEEEEE
T ss_pred CceEEEEECcccCCHH----HHHHHHHHHhccCCCceEEEEe
Confidence 3679999999988642 2344455554434455555554
|
| >3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=86.59 E-value=2.4 Score=44.63 Aligned_cols=144 Identities=13% Similarity=0.044 Sum_probs=71.8
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHHhhhcCC--ceeEE--eeC
Q psy15524 19 DGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTW--IVPSW--LTG 94 (930)
Q Consensus 19 ~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~--~~~~~--~~g 94 (930)
.|.-+++.|++|+|||...+--+.+.... +..+++++-. .-..|+..++.......+. +.... +.+
T Consensus 67 ~G~l~li~G~pG~GKTtl~l~ia~~~a~~---------g~~vl~~slE-~s~~~l~~R~~~~~~~i~~~~l~~~~~~l~~ 136 (315)
T 3bh0_A 67 RRNFVLIAARPSMGKTAFALKQAKNMSDN---------DDVVNLHSLE-MGKKENIKRLIVTAGSINAQKIKAARRDFAS 136 (315)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHTT---------TCEEEEEESS-SCHHHHHHHHHHHHTTCCHHHHHSCHHHHCS
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHc---------CCeEEEEECC-CCHHHHHHHHHHHHcCCCHHHHhcCCCCCCH
Confidence 45569999999999997544433333221 2457887744 3345555555443222110 00000 111
Q ss_pred CCchHH---HHHHhcCCCcEEEE-----ChHHHHHHHhcCCCccCCCcc--EEEEccccccccc----CcHHHHHHHHHH
Q psy15524 95 GEKMKS---EKARIRKGISILVA-----TPGRLLDHCKHTETLKFSKVE--HLVLDEADRILDQ----GYERDIAEFLEI 160 (930)
Q Consensus 95 ~~~~~~---~~~~l~~~~~Ilv~-----Tp~~l~~~l~~~~~~~l~~l~--~vViDE~h~~~~~----~~~~~~~~i~~~ 160 (930)
+. +.. ....+. ..++.+- |++.+...+.. ...-..++ +||||-...+... .....+..+...
T Consensus 137 ~~-~~~l~~a~~~l~-~~~i~i~d~~~~~~~~i~~~i~~--l~~~~~~~~~lVVID~l~~l~~~~~~~~r~~~i~~~~~~ 212 (315)
T 3bh0_A 137 ED-WGKLSMAIGEIS-NSNINIFDKAGQSVNYIWSKTRQ--TKRKNPGKRVIVMIDYLQLLEPAKANDSRTNQISQISRD 212 (315)
T ss_dssp SC-HHHHHHHHHHHH-TSCEEEECCSCCBHHHHHHHHHH--HHHTSSSCCEEEEEECGGGSBCSCTTSCHHHHHHHHHHH
T ss_pred HH-HHHHHHHHHHHh-CCCEEEECCCCCCHHHHHHHHHH--HHHhcCCCCeEEEEeCchhcCCCCCCCCHHHHHHHHHHH
Confidence 11 111 111222 2345543 44555444432 11123588 9999999988632 223455666666
Q ss_pred Hhhc--CCCceEEEEEee
Q psy15524 161 LKKQ--KPQFQSILLSAT 176 (930)
Q Consensus 161 l~~~--~~~~~~i~lSAT 176 (930)
|+.. ..++.++++|-.
T Consensus 213 Lk~lAk~~~i~vi~lsql 230 (315)
T 3bh0_A 213 LKKMARELDVVVIALSQL 230 (315)
T ss_dssp HHHHHHHHTCEEEEEECC
T ss_pred HHHHHHHhCCeEEEEeec
Confidence 6532 234667766653
|
| >1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 | Back alignment and structure |
|---|
Probab=86.47 E-value=2.2 Score=46.27 Aligned_cols=17 Identities=24% Similarity=0.438 Sum_probs=14.9
Q ss_pred cEEEEcCCCChHHHHHH
Q psy15524 22 DVLVRSQTGSGKTLAYA 38 (930)
Q Consensus 22 ~~lv~apTGsGKT~~~~ 38 (930)
.+++.||+|+|||...-
T Consensus 46 ~~li~G~~G~GKTtl~~ 62 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLR 62 (389)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred eEEEECCCCCCHHHHHH
Confidence 79999999999998643
|
| >1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=86.08 E-value=5.5 Score=41.74 Aligned_cols=39 Identities=18% Similarity=0.245 Sum_probs=24.1
Q ss_pred CCccEEEEcccccccccCcHHHHHHHHHHHhhcCCCceEEEEE
Q psy15524 132 SKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLS 174 (930)
Q Consensus 132 ~~l~~vViDE~h~~~~~~~~~~~~~i~~~l~~~~~~~~~i~lS 174 (930)
.+-.++||||+|.+... ....+...+.....++.+|+.+
T Consensus 109 ~~~~vliiDe~~~l~~~----~~~~L~~~le~~~~~~~~i~~~ 147 (327)
T 1iqp_A 109 ASFKIIFLDEADALTQD----AQQALRRTMEMFSSNVRFILSC 147 (327)
T ss_dssp CSCEEEEEETGGGSCHH----HHHHHHHHHHHTTTTEEEEEEE
T ss_pred CCCeEEEEeCCCcCCHH----HHHHHHHHHHhcCCCCeEEEEe
Confidence 45679999999998542 2334445554444555666543
|
| >2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A* | Back alignment and structure |
|---|
Probab=86.07 E-value=2.3 Score=41.82 Aligned_cols=21 Identities=29% Similarity=0.067 Sum_probs=16.5
Q ss_pred cCCcEEEEccCCCchhHHhhH
Q psy15524 428 DGGDVLVRSQTGSGKTLAYAI 448 (930)
Q Consensus 428 ~~~d~lv~a~TGsGKTl~~~l 448 (930)
.|.-+++.+|+|+|||.....
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~ 39 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQ 39 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHH
Confidence 455689999999999976443
|
| >1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=86.04 E-value=5 Score=42.62 Aligned_cols=39 Identities=15% Similarity=0.297 Sum_probs=23.3
Q ss_pred ccceEEEEecchhhhhcCcHHHHHHHHHHHhhcCccceEEEEc
Q psy15524 541 SKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLS 583 (930)
Q Consensus 541 ~~l~~lVlDEah~l~~~g~~~~l~~i~~~l~~~~~~~q~vl~S 583 (930)
...+++|+||+|.+... ....++..+........+++.+
T Consensus 109 ~~~~viiiDe~~~l~~~----~~~~L~~~le~~~~~~~~il~~ 147 (340)
T 1sxj_C 109 KGFKLIILDEADAMTNA----AQNALRRVIERYTKNTRFCVLA 147 (340)
T ss_dssp CSCEEEEETTGGGSCHH----HHHHHHHHHHHTTTTEEEEEEE
T ss_pred CCceEEEEeCCCCCCHH----HHHHHHHHHhcCCCCeEEEEEe
Confidence 34789999999988542 2334445554434455555443
|
| >4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=85.88 E-value=1.9 Score=47.51 Aligned_cols=53 Identities=23% Similarity=0.312 Sum_probs=30.7
Q ss_pred CCCCCCCCCCCHHHHHHHHhcCCC--CCCCHHHHHhHHhhhcCCcEEEEccCCCchhHH
Q psy15524 389 PTSYEEFPGIHPFMKKNLNEGMNI--TQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLA 445 (930)
Q Consensus 389 ~~~f~~l~~l~~~~~~~l~~~~~~--~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~ 445 (930)
..+|+++.|+ ..+++.|.+..-+ ..+--++..- +--.+.+++.+|.|+|||+.
T Consensus 205 ~vt~~DIgGl-~~~k~~L~e~V~~pl~~pe~f~~~G---i~pprGILLyGPPGTGKTlL 259 (467)
T 4b4t_H 205 DVTYSDVGGC-KDQIEKLREVVELPLLSPERFATLG---IDPPKGILLYGPPGTGKTLC 259 (467)
T ss_dssp SCCCSSCTTC-HHHHHHHHHHTHHHHHCHHHHHHHT---CCCCSEEEECSCTTSSHHHH
T ss_pred CCCHHHhccH-HHHHHHHHHHHHHHhcCHHHHHHCC---CCCCCceEeeCCCCCcHHHH
Confidence 4689999555 4566666542211 1111111111 11246799999999999986
|
| >2l8b_A Protein TRAI, DNA helicase I; RECD, hydrolase; NMR {Escherichia coli} | Back alignment and structure |
|---|
Probab=85.70 E-value=1.6 Score=41.26 Aligned_cols=61 Identities=13% Similarity=0.125 Sum_probs=45.3
Q ss_pred CCHHHHHhHHhhhcCCc--EEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHH
Q psy15524 415 VTTVQQLSIQPILDGGD--VLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTL 483 (930)
Q Consensus 415 ~~~iQ~~~i~~il~~~d--~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~ 483 (930)
..+-|..++..++...+ .++.++-|++||-..+.-++.... ..|..+.+|+|+..-+....
T Consensus 35 ~~~~~~~a~~~l~~s~~~~~iv~g~ggs~~~~~~~a~L~~~a~--------~~Gr~V~vLAp~~~s~~~l~ 97 (189)
T 2l8b_A 35 RTAGYSDAVSVLAQDRPSLAIVSGQGGAAGQRERVAELVMMAR--------EQGREVQIIAADRRSQMNMK 97 (189)
T ss_dssp CHHHHHHHHHHHHHHSCCEECCBCSSCSHHHHHHHHHHHHHHH--------HTTCCEEEECSTTHHHHHHS
T ss_pred cCccchhHHHHHhccCCceEEEecccchHHHHHHHHHHHHHHH--------hcCeEEEEEcCchHHHHHHH
Confidence 34668999999987655 778999999999886544444333 35889999999977665443
|
| >3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B* | Back alignment and structure |
|---|
Probab=85.33 E-value=2.4 Score=44.77 Aligned_cols=40 Identities=15% Similarity=0.184 Sum_probs=22.6
Q ss_pred CCccEEEEcccccccccCcHHHHHHHHHHHhhcCCCceEEEEE
Q psy15524 132 SKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLS 174 (930)
Q Consensus 132 ~~l~~vViDE~h~~~~~~~~~~~~~i~~~l~~~~~~~~~i~lS 174 (930)
...++++|||+|.+...... ..+...+.....+.++|+.|
T Consensus 104 ~~~~vliiDEi~~l~~~~~~---~~L~~~le~~~~~~~iI~~~ 143 (324)
T 3u61_B 104 GRQKVIVIDEFDRSGLAESQ---RHLRSFMEAYSSNCSIIITA 143 (324)
T ss_dssp SCEEEEEEESCCCGGGHHHH---HHHHHHHHHHGGGCEEEEEE
T ss_pred CCCeEEEEECCcccCcHHHH---HHHHHHHHhCCCCcEEEEEe
Confidence 36789999999998622222 23333333333445666633
|
| >3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=85.31 E-value=11 Score=41.42 Aligned_cols=49 Identities=24% Similarity=0.234 Sum_probs=29.1
Q ss_pred CcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEc--cCHHHHHHHHHHHH
Q psy15524 430 GDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIIL--PTRELALQTLEIFT 487 (930)
Q Consensus 430 ~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~--PtreLa~Q~~~~~~ 487 (930)
.-+++.+++|+|||.+..- +...+.. .|.+++++. |.|.-+.++...+.
T Consensus 101 ~vIlivG~~G~GKTTt~~k-LA~~l~~--------~G~kVllv~~D~~R~aa~eqL~~~~ 151 (443)
T 3dm5_A 101 TILLMVGIQGSGKTTTVAK-LARYFQK--------RGYKVGVVCSDTWRPGAYHQLRQLL 151 (443)
T ss_dssp EEEEEECCTTSSHHHHHHH-HHHHHHT--------TTCCEEEEECCCSSTHHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHH-HHHHHHH--------CCCeEEEEeCCCcchhHHHHHHHHH
Confidence 3478899999999987432 2233332 355666666 55655544444433
|
| >3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=85.09 E-value=3.6 Score=44.75 Aligned_cols=19 Identities=26% Similarity=0.406 Sum_probs=16.3
Q ss_pred CCcEEEEcCCCChHHHHHH
Q psy15524 20 GGDVLVRSQTGSGKTLAYA 38 (930)
Q Consensus 20 g~~~lv~apTGsGKT~~~~ 38 (930)
++++|+++|+|+|||.+.-
T Consensus 148 ~~~vLL~GppGtGKT~la~ 166 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAK 166 (389)
T ss_dssp CSEEEEESSTTSCHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 4689999999999998643
|
| >2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A* | Back alignment and structure |
|---|
Probab=85.03 E-value=1.5 Score=47.09 Aligned_cols=17 Identities=24% Similarity=0.470 Sum_probs=14.9
Q ss_pred CcEEEEccCCCchhHHh
Q psy15524 430 GDVLVRSQTGSGKTLAY 446 (930)
Q Consensus 430 ~d~lv~a~TGsGKTl~~ 446 (930)
+.+++.+|+|+|||..+
T Consensus 85 ~~iLL~GppGtGKT~la 101 (355)
T 2qp9_X 85 SGILLYGPPGTGKSYLA 101 (355)
T ss_dssp CCEEEECSTTSCHHHHH
T ss_pred ceEEEECCCCCcHHHHH
Confidence 56999999999999863
|
| >1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A* | Back alignment and structure |
|---|
Probab=85.00 E-value=1.4 Score=45.97 Aligned_cols=21 Identities=29% Similarity=0.379 Sum_probs=16.5
Q ss_pred hcCCcEEEEccCCCchhHHhh
Q psy15524 427 LDGGDVLVRSQTGSGKTLAYA 447 (930)
Q Consensus 427 l~~~d~lv~a~TGsGKTl~~~ 447 (930)
..|.=+++.||+|+|||....
T Consensus 33 ~~G~~~~i~G~~G~GKTTl~~ 53 (296)
T 1cr0_A 33 RGGEVIMVTSGSGMGKSTFVR 53 (296)
T ss_dssp CTTCEEEEEESTTSSHHHHHH
T ss_pred CCCeEEEEEeCCCCCHHHHHH
Confidence 346668899999999997543
|
| >1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A* | Back alignment and structure |
|---|
Probab=84.86 E-value=3.6 Score=45.00 Aligned_cols=30 Identities=20% Similarity=0.289 Sum_probs=18.7
Q ss_pred ceEEEEecchhhhhc--CcHHHHHHHHHHHhh
Q psy15524 543 VEHLVLDEADRILDQ--GYERDIAEFLEILKK 572 (930)
Q Consensus 543 l~~lVlDEah~l~~~--g~~~~l~~i~~~l~~ 572 (930)
--+|||||+|.+... +-...+..++..+..
T Consensus 139 ~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~ 170 (412)
T 1w5s_A 139 YLLVILDEFQSMLSSPRIAAEDLYTLLRVHEE 170 (412)
T ss_dssp EEEEEEESTHHHHSCTTSCHHHHHHHHTHHHH
T ss_pred eEEEEEeCHHHHhhccCcchHHHHHHHHHHHh
Confidence 458999999998653 123445555555543
|
| >4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=84.60 E-value=4.1 Score=44.11 Aligned_cols=45 Identities=22% Similarity=0.220 Sum_probs=27.2
Q ss_pred cEEEEcccccccccC----------cHHHHHHHHHHHhhcCCCceEEEEEeecCC
Q psy15524 135 EHLVLDEADRILDQG----------YERDIAEFLEILKKQKPQFQSILLSATLTP 179 (930)
Q Consensus 135 ~~vViDE~h~~~~~~----------~~~~~~~i~~~l~~~~~~~~~i~lSAT~~~ 179 (930)
..|.|||+|.+.... ....+..++..+........++.+-||-.+
T Consensus 243 ~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V~vIaATNrp 297 (405)
T 4b4t_J 243 SIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKIIMATNRL 297 (405)
T ss_dssp EEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCEEEEEEESCS
T ss_pred ceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCCeEEEeccCCh
Confidence 578899999986421 112344555555544445566667777654
|
| >3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=84.42 E-value=4.3 Score=43.08 Aligned_cols=18 Identities=28% Similarity=0.374 Sum_probs=15.5
Q ss_pred CcEEEEcCCCChHHHHHH
Q psy15524 21 GDVLVRSQTGSGKTLAYA 38 (930)
Q Consensus 21 ~~~lv~apTGsGKT~~~~ 38 (930)
.++++.+|+|+|||...-
T Consensus 56 ~~vll~G~~GtGKT~la~ 73 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLAN 73 (338)
T ss_dssp CCEEEECSTTSSHHHHHH
T ss_pred CeEEEECcCCCCHHHHHH
Confidence 479999999999998643
|
| >4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=84.17 E-value=1.8 Score=47.20 Aligned_cols=53 Identities=23% Similarity=0.426 Sum_probs=30.3
Q ss_pred CCCCCCCCCCCHHHHHHHHhcC--CCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHH
Q psy15524 389 PTSYEEFPGIHPFMKKNLNEGM--NITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLA 445 (930)
Q Consensus 389 ~~~f~~l~~l~~~~~~~l~~~~--~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~ 445 (930)
..+|+++.|+. ..++.|.+.. .+..+--++...++ -.+.+++.+|.|+|||+.
T Consensus 178 ~v~~~DIgGld-~~k~~L~e~v~~Pl~~pe~f~~~Gi~---~prGvLLyGPPGTGKTlL 232 (437)
T 4b4t_I 178 TESYSDIGGLE-SQIQEIKESVELPLTHPELYEEMGIK---PPKGVILYGAPGTGKTLL 232 (437)
T ss_dssp CCCGGGTCSCH-HHHHHHHHHHHHHHHCCHHHHHHTCC---CCSEEEEESSTTTTHHHH
T ss_pred CCcceecCcHH-HHHHHHHHHHHHHHhCHHHHHhCCCC---CCCCCceECCCCchHHHH
Confidence 45799996664 4444454321 11222222222211 136799999999999986
|
| >4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=84.15 E-value=1.4 Score=48.40 Aligned_cols=54 Identities=22% Similarity=0.343 Sum_probs=29.6
Q ss_pred CCCCCCCCCCCHHHHHHHHhcCC--CCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHh
Q psy15524 389 PTSYEEFPGIHPFMKKNLNEGMN--ITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAY 446 (930)
Q Consensus 389 ~~~f~~l~~l~~~~~~~l~~~~~--~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~ 446 (930)
..+|+++.|+. ..++.|.+..- +..|--++...+ --.+.+++.+|+|+|||+.+
T Consensus 177 ~v~~~digGl~-~~k~~l~e~v~~pl~~p~~f~~~g~---~~prGvLL~GPPGtGKTllA 232 (437)
T 4b4t_L 177 EITFDGIGGLT-EQIRELREVIELPLKNPEIFQRVGI---KPPKGVLLYGPPGTGKTLLA 232 (437)
T ss_dssp SSCSGGGCSCH-HHHHHHHHHHHHHHHCHHHHHHHCC---CCCCEEEEESCTTSSHHHHH
T ss_pred CCChhHhCChH-HHHHHHHHHHHHHHhCHHHHHhCCC---CCCCeEEEECCCCCcHHHHH
Confidence 45799995554 44555543111 111111111111 11367999999999999863
|
| >2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A* | Back alignment and structure |
|---|
Probab=83.87 E-value=2 Score=46.21 Aligned_cols=18 Identities=22% Similarity=0.436 Sum_probs=15.6
Q ss_pred CcEEEEcCCCChHHHHHH
Q psy15524 21 GDVLVRSQTGSGKTLAYA 38 (930)
Q Consensus 21 ~~~lv~apTGsGKT~~~~ 38 (930)
+.+|+++|+|+|||...-
T Consensus 85 ~~iLL~GppGtGKT~la~ 102 (355)
T 2qp9_X 85 SGILLYGPPGTGKSYLAK 102 (355)
T ss_dssp CCEEEECSTTSCHHHHHH
T ss_pred ceEEEECCCCCcHHHHHH
Confidence 579999999999998644
|
| >4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=83.47 E-value=1.2 Score=47.29 Aligned_cols=49 Identities=16% Similarity=0.066 Sum_probs=29.4
Q ss_pred cCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHH
Q psy15524 428 DGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIF 486 (930)
Q Consensus 428 ~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~ 486 (930)
.|.=+++.|++|+|||...+ -+...+.. .+..++|++.- .-..|+...+
T Consensus 45 ~G~LiiIaG~pG~GKTt~al-~ia~~~a~--------~g~~Vl~fSlE-ms~~ql~~Rl 93 (338)
T 4a1f_A 45 KGSLVIIGARPSMGKTSLMM-NMVLSALN--------DDRGVAVFSLE-MSAEQLALRA 93 (338)
T ss_dssp TTCEEEEEECTTSCHHHHHH-HHHHHHHH--------TTCEEEEEESS-SCHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHH-HHHHHHHH--------cCCeEEEEeCC-CCHHHHHHHH
Confidence 44558999999999997543 33333322 25668887743 2234444444
|
| >3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=83.17 E-value=4.1 Score=42.83 Aligned_cols=52 Identities=10% Similarity=-0.072 Sum_probs=30.7
Q ss_pred hcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHHHH
Q psy15524 427 LDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTK 488 (930)
Q Consensus 427 l~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~ 488 (930)
..|.=+++.|++|+|||...+--+..... .+..+++++-- +-..|+...+..
T Consensus 66 ~~G~l~li~G~pG~GKTtl~l~ia~~~a~---------~g~~vl~~slE-~s~~~l~~R~~~ 117 (315)
T 3bh0_A 66 KRRNFVLIAARPSMGKTAFALKQAKNMSD---------NDDVVNLHSLE-MGKKENIKRLIV 117 (315)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHHHHHT---------TTCEEEEEESS-SCHHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHH---------cCCeEEEEECC-CCHHHHHHHHHH
Confidence 34555899999999999754333333322 24567887743 334444444443
|
| >1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1 | Back alignment and structure |
|---|
Probab=83.17 E-value=3.9 Score=43.90 Aligned_cols=40 Identities=20% Similarity=0.170 Sum_probs=25.8
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHH
Q psy15524 20 GGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRE 68 (930)
Q Consensus 20 g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~ 68 (930)
|.-+++.+|+|+|||...+- ++..+.. .+..++|+.....
T Consensus 74 G~li~I~G~pGsGKTtlal~-la~~~~~--------~g~~vlyi~~E~s 113 (366)
T 1xp8_A 74 GRITEIYGPESGGKTTLALA-IVAQAQK--------AGGTCAFIDAEHA 113 (366)
T ss_dssp TSEEEEEESTTSSHHHHHHH-HHHHHHH--------TTCCEEEEESSCC
T ss_pred CcEEEEEcCCCCChHHHHHH-HHHHHHH--------CCCeEEEEECCCC
Confidence 45689999999999975443 4333332 1335788875543
|
| >1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=83.12 E-value=7 Score=41.51 Aligned_cols=22 Identities=23% Similarity=0.330 Sum_probs=17.1
Q ss_pred hhcC--CcEEEEcCCCChHHHHHH
Q psy15524 17 ILDG--GDVLVRSQTGSGKTLAYA 38 (930)
Q Consensus 17 ~~~g--~~~lv~apTGsGKT~~~~ 38 (930)
+..| .++++.||+|+|||...-
T Consensus 53 l~~~~~~~~ll~G~~G~GKT~la~ 76 (353)
T 1sxj_D 53 LKSANLPHMLFYGPPGTGKTSTIL 76 (353)
T ss_dssp TTCTTCCCEEEECSTTSSHHHHHH
T ss_pred HhcCCCCEEEEECCCCCCHHHHHH
Confidence 3445 469999999999998643
|
| >3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A* | Back alignment and structure |
|---|
Probab=82.94 E-value=1.9 Score=48.49 Aligned_cols=45 Identities=24% Similarity=0.390 Sum_probs=28.4
Q ss_pred eEEEEecchhhhhcC-------cHHHHHHHHHHHhhcCccceEEEEccccCH
Q psy15524 544 EHLVLDEADRILDQG-------YERDIAEFLEILKKQKPQFQSILLSATLTP 588 (930)
Q Consensus 544 ~~lVlDEah~l~~~g-------~~~~l~~i~~~l~~~~~~~q~vl~SAT~~~ 588 (930)
.+|+|||+|.+.... -......++..+........++++.||-.+
T Consensus 299 ~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~~ 350 (489)
T 3hu3_A 299 AIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRP 350 (489)
T ss_dssp EEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEEEEEESCG
T ss_pred cEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEEEEecCCc
Confidence 589999999987532 113445566666554445566777777543
|
| >3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli} | Back alignment and structure |
|---|
Probab=82.80 E-value=1.3 Score=57.65 Aligned_cols=43 Identities=23% Similarity=0.165 Sum_probs=31.0
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHH
Q psy15524 20 GGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELAL 71 (930)
Q Consensus 20 g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~ 71 (930)
|+++++++|+|+|||..+...+.+... .|.+++|+...-.+..
T Consensus 1427 g~~vll~GppGtGKT~LA~ala~ea~~---------~G~~v~Fi~~e~~~~~ 1469 (2050)
T 3cmu_A 1427 GRIVEIYGPESSGKTTLTLQVIAAAQR---------EGKTCAFIDAEHALDP 1469 (2050)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHHHT---------TTCCEEEECTTSCCCH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH---------cCCcEEEEEcccccCH
Confidence 679999999999999986655544332 2556888886654433
|
| >3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A* | Back alignment and structure |
|---|
Probab=82.42 E-value=2.5 Score=47.48 Aligned_cols=45 Identities=24% Similarity=0.390 Sum_probs=27.6
Q ss_pred cEEEEcccccccccC-------cHHHHHHHHHHHhhcCCCceEEEEEeecCC
Q psy15524 135 EHLVLDEADRILDQG-------YERDIAEFLEILKKQKPQFQSILLSATLTP 179 (930)
Q Consensus 135 ~~vViDE~h~~~~~~-------~~~~~~~i~~~l~~~~~~~~~i~lSAT~~~ 179 (930)
..|+|||+|.+.... -......++..+........++.+.||-.+
T Consensus 299 ~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~~ 350 (489)
T 3hu3_A 299 AIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRP 350 (489)
T ss_dssp EEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEEEEEESCG
T ss_pred cEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEEEEecCCc
Confidence 589999999987532 112334455555544445567777777544
|
| >3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=81.59 E-value=0.98 Score=41.37 Aligned_cols=22 Identities=14% Similarity=0.107 Sum_probs=18.3
Q ss_pred hhcCCcEEEEcCCCChHHHHHH
Q psy15524 17 ILDGGDVLVRSQTGSGKTLAYA 38 (930)
Q Consensus 17 ~~~g~~~lv~apTGsGKT~~~~ 38 (930)
...+.++++.+|+|+|||.++-
T Consensus 21 a~~~~~vll~G~~GtGKt~lA~ 42 (145)
T 3n70_A 21 SETDIAVWLYGAPGTGRMTGAR 42 (145)
T ss_dssp TTCCSCEEEESSTTSSHHHHHH
T ss_pred hCCCCCEEEECCCCCCHHHHHH
Confidence 3467789999999999998653
|
| >1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C* | Back alignment and structure |
|---|
Probab=81.54 E-value=6 Score=41.53 Aligned_cols=18 Identities=28% Similarity=0.290 Sum_probs=15.6
Q ss_pred CcEEEEcCCCChHHHHHH
Q psy15524 21 GDVLVRSQTGSGKTLAYA 38 (930)
Q Consensus 21 ~~~lv~apTGsGKT~~~~ 38 (930)
..+++++|+|+|||...-
T Consensus 39 ~~vll~G~~GtGKT~la~ 56 (324)
T 1hqc_A 39 EHLLLFGPPGLGKTTLAH 56 (324)
T ss_dssp CCCEEECCTTCCCHHHHH
T ss_pred CcEEEECCCCCCHHHHHH
Confidence 679999999999998643
|
| >2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A* | Back alignment and structure |
|---|
Probab=81.44 E-value=6.7 Score=38.31 Aligned_cols=23 Identities=26% Similarity=-0.002 Sum_probs=17.6
Q ss_pred cCCcEEEEcCCCChHHHHHHHHH
Q psy15524 19 DGGDVLVRSQTGSGKTLAYAIPI 41 (930)
Q Consensus 19 ~g~~~lv~apTGsGKT~~~~l~~ 41 (930)
.|.-+++.+|+|+|||.....-+
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~ 41 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTG 41 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
Confidence 45669999999999998654433
|
| >3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A | Back alignment and structure |
|---|
Probab=81.23 E-value=8.5 Score=42.18 Aligned_cols=43 Identities=21% Similarity=0.440 Sum_probs=26.4
Q ss_pred CCccEEEEccccccc---ccCcHHHHHHHHHHHhhcCCCceEEEEEeec
Q psy15524 132 SKVEHLVLDEADRIL---DQGYERDIAEFLEILKKQKPQFQSILLSATL 177 (930)
Q Consensus 132 ~~l~~vViDE~h~~~---~~~~~~~~~~i~~~l~~~~~~~~~i~lSAT~ 177 (930)
.+.+++|||++-+.. +..+...+..+...+ .++.-++.++|+.
T Consensus 178 ~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~---~pd~vlLVlDa~~ 223 (433)
T 3kl4_A 178 NKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVL---KPDDVILVIDASI 223 (433)
T ss_dssp TTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHH---CCSEEEEEEEGGG
T ss_pred cCCCEEEEECCCCccccCCHHHHHHHHHHHHhh---CCcceEEEEeCcc
Confidence 468999999997653 333444444444443 4555667777765
|
| >3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=80.63 E-value=0.91 Score=41.51 Aligned_cols=21 Identities=14% Similarity=0.129 Sum_probs=17.6
Q ss_pred HhhcCCcEEEEcCCCChHHHH
Q psy15524 16 PILDGGDVLVRSQTGSGKTLA 36 (930)
Q Consensus 16 ~~~~g~~~lv~apTGsGKT~~ 36 (930)
.+..+.++++.+|+|+|||.+
T Consensus 23 ~~~~~~~vll~G~~GtGKt~l 43 (143)
T 3co5_A 23 AAKRTSPVFLTGEAGSPFETV 43 (143)
T ss_dssp HHTCSSCEEEEEETTCCHHHH
T ss_pred HhCCCCcEEEECCCCccHHHH
Confidence 344677899999999999975
|
| >1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A | Back alignment and structure |
|---|
Probab=80.63 E-value=7.4 Score=39.90 Aligned_cols=24 Identities=21% Similarity=0.176 Sum_probs=18.4
Q ss_pred hcCCcEEEEcCCCChHHHHHHHHH
Q psy15524 18 LDGGDVLVRSQTGSGKTLAYAIPI 41 (930)
Q Consensus 18 ~~g~~~lv~apTGsGKT~~~~l~~ 41 (930)
..|.-+++.+|+|+|||.....-+
T Consensus 28 ~~G~i~~i~G~~GsGKTtl~~~l~ 51 (279)
T 1nlf_A 28 VAGTVGALVSPGGAGKSMLALQLA 51 (279)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHH
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHH
Confidence 356679999999999998654433
|
| >3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli} | Back alignment and structure |
|---|
Probab=80.31 E-value=2.7 Score=54.84 Aligned_cols=41 Identities=24% Similarity=0.194 Sum_probs=29.8
Q ss_pred CCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHH
Q psy15524 429 GGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTREL 478 (930)
Q Consensus 429 ~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreL 478 (930)
++.+++.+|+|+|||..+...+.+... .|.+++++..-..+
T Consensus 1427 g~~vll~GppGtGKT~LA~ala~ea~~---------~G~~v~Fi~~e~~~ 1467 (2050)
T 3cmu_A 1427 GRIVEIYGPESSGKTTLTLQVIAAAQR---------EGKTCAFIDAEHAL 1467 (2050)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHHHT---------TTCCEEEECTTSCC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH---------cCCcEEEEEccccc
Confidence 578999999999999976555554432 36678888876443
|
| >2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=80.31 E-value=6.5 Score=41.03 Aligned_cols=39 Identities=15% Similarity=0.267 Sum_probs=26.1
Q ss_pred ccceEEEEecchhhhhcCcHHHHHHHHHHHhhcCccceEEEEc
Q psy15524 541 SKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLS 583 (930)
Q Consensus 541 ~~l~~lVlDEah~l~~~g~~~~l~~i~~~l~~~~~~~q~vl~S 583 (930)
...+++||||||++... ....+++.+...++...+++.+
T Consensus 81 ~~~kvviIdead~lt~~----a~naLLk~LEep~~~t~fIl~t 119 (305)
T 2gno_A 81 YTRKYVIVHDCERMTQQ----AANAFLKALEEPPEYAVIVLNT 119 (305)
T ss_dssp SSSEEEEETTGGGBCHH----HHHHTHHHHHSCCTTEEEEEEE
T ss_pred CCceEEEeccHHHhCHH----HHHHHHHHHhCCCCCeEEEEEE
Confidence 46789999999988643 3456777776644455555544
|
| >1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=80.05 E-value=3.3 Score=43.48 Aligned_cols=38 Identities=16% Similarity=0.163 Sum_probs=23.6
Q ss_pred CccEEEEcccccccccCcHHHHHHHHHHHhhcCCCceEEEEE
Q psy15524 133 KVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLS 174 (930)
Q Consensus 133 ~l~~vViDE~h~~~~~~~~~~~~~i~~~l~~~~~~~~~i~lS 174 (930)
.-.+|||||+|.+.... ...+...+....++..+|+.|
T Consensus 107 ~~~viiiDe~~~l~~~~----~~~L~~~le~~~~~~~~il~~ 144 (323)
T 1sxj_B 107 KHKIVILDEADSMTAGA----QQALRRTMELYSNSTRFAFAC 144 (323)
T ss_dssp CCEEEEEESGGGSCHHH----HHTTHHHHHHTTTTEEEEEEE
T ss_pred CceEEEEECcccCCHHH----HHHHHHHHhccCCCceEEEEe
Confidence 36799999999986432 333444444444555666654
|
| >1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A* | Back alignment and structure |
|---|
Probab=80.01 E-value=2.7 Score=43.69 Aligned_cols=23 Identities=26% Similarity=0.307 Sum_probs=18.0
Q ss_pred hhcCCcEEEEcCCCChHHHHHHH
Q psy15524 17 ILDGGDVLVRSQTGSGKTLAYAI 39 (930)
Q Consensus 17 ~~~g~~~lv~apTGsGKT~~~~l 39 (930)
+..|.-+++.||+|+|||.....
T Consensus 32 l~~G~~~~i~G~~G~GKTTl~~~ 54 (296)
T 1cr0_A 32 ARGGEVIMVTSGSGMGKSTFVRQ 54 (296)
T ss_dssp BCTTCEEEEEESTTSSHHHHHHH
T ss_pred CCCCeEEEEEeCCCCCHHHHHHH
Confidence 34567799999999999985443
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 930 | ||||
| d1hv8a1 | 208 | c.37.1.19 (A:3-210) Putative DEAD box RNA helicase | 4e-32 | |
| d1hv8a1 | 208 | c.37.1.19 (A:3-210) Putative DEAD box RNA helicase | 8e-24 | |
| d1hv8a1 | 208 | c.37.1.19 (A:3-210) Putative DEAD box RNA helicase | 8e-14 | |
| d1qdea_ | 212 | c.37.1.19 (A:) Initiation factor 4a {Baker's yeast | 6e-30 | |
| d1qdea_ | 212 | c.37.1.19 (A:) Initiation factor 4a {Baker's yeast | 6e-21 | |
| d1qdea_ | 212 | c.37.1.19 (A:) Initiation factor 4a {Baker's yeast | 7e-12 | |
| d2j0sa1 | 222 | c.37.1.19 (A:22-243) Probable ATP-dependent RNA he | 5e-29 | |
| d2j0sa1 | 222 | c.37.1.19 (A:22-243) Probable ATP-dependent RNA he | 3e-19 | |
| d2j0sa1 | 222 | c.37.1.19 (A:22-243) Probable ATP-dependent RNA he | 8e-09 | |
| d1veca_ | 206 | c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Huma | 9e-29 | |
| d1veca_ | 206 | c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Huma | 2e-18 | |
| d1veca_ | 206 | c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Huma | 3e-08 | |
| d1t6na_ | 207 | c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP5 | 3e-28 | |
| d1t6na_ | 207 | c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP5 | 3e-19 | |
| d1t6na_ | 207 | c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP5 | 1e-08 | |
| d1wrba1 | 238 | c.37.1.19 (A:164-401) putative ATP-dependent RNA h | 4e-28 | |
| d1wrba1 | 238 | c.37.1.19 (A:164-401) putative ATP-dependent RNA h | 6e-19 | |
| d1wrba1 | 238 | c.37.1.19 (A:164-401) putative ATP-dependent RNA h | 2e-08 | |
| d2g9na1 | 218 | c.37.1.19 (A:21-238) Initiation factor 4a {Human ( | 4e-28 | |
| d2g9na1 | 218 | c.37.1.19 (A:21-238) Initiation factor 4a {Human ( | 4e-19 | |
| d2g9na1 | 218 | c.37.1.19 (A:21-238) Initiation factor 4a {Human ( | 2e-08 | |
| d2bmfa2 | 305 | c.37.1.14 (A:178-482) Dengue virus helicase {Dengu | 2e-24 | |
| d2bmfa2 | 305 | c.37.1.14 (A:178-482) Dengue virus helicase {Dengu | 2e-16 | |
| d1s2ma1 | 206 | c.37.1.19 (A:46-251) Putative ATP-dependent RNA he | 3e-23 | |
| d1s2ma1 | 206 | c.37.1.19 (A:46-251) Putative ATP-dependent RNA he | 7e-14 | |
| d1s2ma1 | 206 | c.37.1.19 (A:46-251) Putative ATP-dependent RNA he | 7e-08 | |
| d1oywa2 | 206 | c.37.1.19 (A:1-206) RecQ helicase domain {Escheric | 4e-23 | |
| d1oywa2 | 206 | c.37.1.19 (A:1-206) RecQ helicase domain {Escheric | 9e-19 | |
| d1oywa2 | 206 | c.37.1.19 (A:1-206) RecQ helicase domain {Escheric | 5e-06 | |
| d1gkub1 | 237 | c.37.1.16 (B:1-250) Helicase-like "domain" of reve | 8e-22 | |
| d1gkub1 | 237 | c.37.1.16 (B:1-250) Helicase-like "domain" of reve | 1e-20 | |
| d1gkub1 | 237 | c.37.1.16 (B:1-250) Helicase-like "domain" of reve | 6e-06 | |
| d2p6ra3 | 202 | c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus | 2e-20 | |
| d2p6ra3 | 202 | c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus | 3e-18 | |
| d2p6ra3 | 202 | c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus | 4e-04 | |
| d1q0ua_ | 209 | c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR | 4e-20 | |
| d1q0ua_ | 209 | c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR | 2e-10 | |
| d1q0ua_ | 209 | c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR | 2e-06 | |
| d1hv8a2 | 155 | c.37.1.19 (A:211-365) Putative DEAD box RNA helica | 2e-19 | |
| d1a1va2 | 299 | c.37.1.14 (A:326-624) HCV helicase domain {Human h | 3e-19 | |
| d1gkub2 | 248 | c.37.1.16 (B:251-498) Helicase-like "domain" of re | 7e-17 | |
| d1fuka_ | 162 | c.37.1.19 (A:) Initiation factor 4a {Baker's yeast | 2e-15 | |
| d1wp9a2 | 286 | c.37.1.19 (A:201-486) putative ATP-dependent RNA h | 3e-15 | |
| d2j0sa2 | 168 | c.37.1.19 (A:244-411) Probable ATP-dependent RNA h | 9e-14 | |
| d2fwra1 | 200 | c.37.1.19 (A:257-456) DNA repair protein RAD25 {Ar | 1e-12 | |
| d1jr6a_ | 138 | c.37.1.14 (A:) HCV helicase domain {Human hepatiti | 4e-12 | |
| d1wp9a1 | 200 | c.37.1.19 (A:1-200) putative ATP-dependent RNA hel | 9e-11 | |
| d1wp9a1 | 200 | c.37.1.19 (A:1-200) putative ATP-dependent RNA hel | 4e-10 | |
| d2rb4a1 | 168 | c.37.1.19 (A:307-474) ATP-dependent RNA helicase D | 1e-10 | |
| d1oywa3 | 200 | c.37.1.19 (A:207-406) RecQ helicase domain {Escher | 1e-09 | |
| d1t5la2 | 181 | c.37.1.19 (A:415-595) Nucleotide excision repair e | 2e-09 | |
| d2p6ra4 | 201 | c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglob | 2e-07 | |
| d1t5ia_ | 168 | c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP5 | 3e-07 | |
| d1a1va1 | 136 | c.37.1.14 (A:190-325) HCV helicase domain {Human h | 4e-04 | |
| d1a1va1 | 136 | c.37.1.14 (A:190-325) HCV helicase domain {Human h | 4e-04 | |
| d1yksa1 | 140 | c.37.1.14 (A:185-324) YFV helicase domain {Yellow | 0.001 | |
| d1yksa1 | 140 | c.37.1.14 (A:185-324) YFV helicase domain {Yellow | 0.001 | |
| d1yksa2 | 299 | c.37.1.14 (A:325-623) YFV helicase domain {Yellow | 0.001 |
| >d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 208 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative DEAD box RNA helicase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 122 bits (306), Expect = 4e-32
Identities = 61/217 (28%), Positives = 105/217 (48%), Gaps = 16/217 (7%)
Query: 391 SYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGG-DVLVRSQTGSGKTLAYAIP 449
++ E + + + + T +Q I L+ +++ +++TGSGKT ++AIP
Sbjct: 5 NFNEL-NLSDNILNAIRN-KGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIP 62
Query: 450 IIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKS 509
+I+ + E GI A+I+ PTRELA+Q + L + + G K
Sbjct: 63 LIELVNENN-------GIEAIILTPTRELAIQVADEIESLKGNKNLKIAKIY--GGKAIY 113
Query: 510 EKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEI 569
+ + K +I+V TPGR+LDH TL V++ +LDEAD +L+ G+ +D +I
Sbjct: 114 PQIKALKNANIVVGTPGRILDHINR-GTLNLKNVKYFILDEADEMLNMGFIKD---VEKI 169
Query: 570 LKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDA 606
L + +L SAT+ + LA + + I A
Sbjct: 170 LNACNKDKRILLFSATMPREILNLAKKYMGDYSFIKA 206
|
| >d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 208 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative DEAD box RNA helicase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 98.2 bits (244), Expect = 8e-24
Identities = 56/180 (31%), Positives = 92/180 (51%), Gaps = 14/180 (7%)
Query: 1 MNITQVTTVQQLSIQPILDGG-DVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIY 59
+ T +Q I L+ +++ +++TGSGKT ++AIP+I+ + E GI
Sbjct: 22 KGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNENN-------GIE 74
Query: 60 AVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRL 119
A+I+ PTRELA+Q + L + + G K + + K +I+V TPGR+
Sbjct: 75 AIILTPTRELAIQVADEIESLKGNKNLKIAKIY--GGKAIYPQIKALKNANIVVGTPGRI 132
Query: 120 LDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTP 179
LDH TL V++ +LDEAD +L+ G+ +D +IL + +L SAT+
Sbjct: 133 LDHINR-GTLNLKNVKYFILDEADEMLNMGFIKD---VEKILNACNKDKRILLFSATMPR 188
|
| >d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 208 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative DEAD box RNA helicase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 69.3 bits (169), Expect = 8e-14
Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 3/73 (4%)
Query: 186 HTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLTPAVQRL 245
+ TL V++ +LDEAD +L+ G+ +D +IL + +L SAT+ + L
Sbjct: 137 NRGTLNLKNVKYFILDEADEMLNMGFIKD---VEKILNACNKDKRILLFSATMPREILNL 193
Query: 246 AGMTLQNPIQIDA 258
A + + I A
Sbjct: 194 AKKYMGDYSFIKA 206
|
| >d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 212 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Initiation factor 4a species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 116 bits (290), Expect = 6e-30
Identities = 56/215 (26%), Positives = 107/215 (49%), Gaps = 14/215 (6%)
Query: 390 TSYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIP 449
+++ + + + + + + +QQ +I PI++G DVL ++Q+G+GKT ++I
Sbjct: 10 YKFDDM-ELDENLLRGVFG-YGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIA 67
Query: 450 IIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKS 509
+Q++ + A+++ PTRELALQ ++ L V + +
Sbjct: 68 ALQRID------TSVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIG--GTSFV 119
Query: 510 EKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEI 569
E A + I+V TPGR+ D+ + + K++ +LDEAD +L G++ I + +
Sbjct: 120 EDAEGLRDAQIVVGTPGRVFDNIQRR-RFRTDKIKMFILDEADEMLSSGFKEQIYQIFTL 178
Query: 570 LKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQI 604
L Q +LLSAT+ V + ++NP++I
Sbjct: 179 LPPTT---QVVLLSATMPNDVLEVTTKFMRNPVRI 210
|
| >d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 212 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Initiation factor 4a species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 89.9 bits (222), Expect = 6e-21
Identities = 52/179 (29%), Positives = 91/179 (50%), Gaps = 12/179 (6%)
Query: 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYA 60
+ + +QQ +I PI++G DVL ++Q+G+GKT ++I +Q++ + A
Sbjct: 28 YGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRID------TSVKAPQA 81
Query: 61 VIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLL 120
+++ PTRELALQ ++ L V + + E A + I+V TPGR+
Sbjct: 82 LMLAPTRELALQIQKVVMALAFHMDIKVHACIG--GTSFVEDAEGLRDAQIVVGTPGRVF 139
Query: 121 DHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTP 179
D+ + + K++ +LDEAD +L G++ I + +L Q +LLSAT+
Sbjct: 140 DNIQRR-RFRTDKIKMFILDEADEMLSSGFKEQIYQIFTLLPPTT---QVVLLSATMPN 194
|
| >d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 212 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Initiation factor 4a species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 63.7 bits (154), Expect = 7e-12
Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 4/80 (5%)
Query: 178 TPA-TCWCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSA 236
TP + K++ +LDEAD +L G++ I + +L Q VLLSA
Sbjct: 134 TPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSGFKEQIYQIFTLLPPTT---QVVLLSA 190
Query: 237 TLTPAVQRLAGMTLQNPIQI 256
T+ V + ++NP++I
Sbjct: 191 TMPNDVLEVTTKFMRNPVRI 210
|
| >d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} Length = 222 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Probable ATP-dependent RNA helicase DDX48 species: Human (Homo sapiens) [TaxId: 9606]
Score = 113 bits (284), Expect = 5e-29
Identities = 57/223 (25%), Positives = 109/223 (48%), Gaps = 13/223 (5%)
Query: 383 SEALFAPTSYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGK 442
SE + +++ G+ + + + + + +QQ +I+ I+ G DV+ +SQ+G+GK
Sbjct: 10 SEEVDVTPTFDTM-GLREDLLRGIYA-YGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGK 67
Query: 443 TLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLT 502
T ++I ++Q L A+I+ PTRELA+Q + L + +
Sbjct: 68 TATFSISVLQCLDIQVR------ETQALILAPTRELAVQIQKGLLALGD-YMNVQCHACI 120
Query: 503 GGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERD 562
GG + + ++ G ++ TPGR+ D + + ++ LVLDEAD +L++G++
Sbjct: 121 GGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSL-RTRAIKMLVLDEADEMLNKGFKEQ 179
Query: 563 IAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQID 605
I + L Q +L+SATL + + + +PI+I
Sbjct: 180 IYDVYRYLPPAT---QVVLISATLPHEILEMTNKFMTDPIRIL 219
|
| >d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} Length = 222 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Probable ATP-dependent RNA helicase DDX48 species: Human (Homo sapiens) [TaxId: 9606]
Score = 85.3 bits (210), Expect = 3e-19
Identities = 51/179 (28%), Positives = 90/179 (50%), Gaps = 11/179 (6%)
Query: 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYA 60
+ + +QQ +I+ I+ G DV+ +SQ+G+GKT ++I ++Q L A
Sbjct: 35 YGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQVR------ETQA 88
Query: 61 VIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLL 120
+I+ PTRELA+Q + L + + GG + + ++ G ++ TPGR+
Sbjct: 89 LILAPTRELAVQIQKGLLALGD-YMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVF 147
Query: 121 DHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTP 179
D + + ++ LVLDEAD +L++G++ I + L Q +L+SATL
Sbjct: 148 DMIRRRSL-RTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPAT---QVVLISATLPH 202
|
| >d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} Length = 222 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Probable ATP-dependent RNA helicase DDX48 species: Human (Homo sapiens) [TaxId: 9606]
Score = 54.8 bits (131), Expect = 8e-09
Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 4/81 (4%)
Query: 178 TPATCW-CKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSA 236
TP + +L+ ++ LVLDEAD +L++G++ I + L Q VL+SA
Sbjct: 142 TPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPAT---QVVLISA 198
Query: 237 TLTPAVQRLAGMTLQNPIQID 257
TL + + + +PI+I
Sbjct: 199 TLPHEILEMTNKFMTDPIRIL 219
|
| >d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo sapiens) [TaxId: 9606]} Length = 206 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEAD box RNA helicase rck/p54 species: Human (Homo sapiens) [TaxId: 9606]
Score = 112 bits (280), Expect = 9e-29
Identities = 65/216 (30%), Positives = 116/216 (53%), Gaps = 12/216 (5%)
Query: 390 TSYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIP 449
+E++ + + + E M + + +Q+ SI L G D+L R++ G+GK+ AY IP
Sbjct: 3 NEFEDY-CLKRELLMGIFE-MGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIP 60
Query: 450 IIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKS 509
++++L +KD I A++I+PTRELALQ +I ++ K TGG ++
Sbjct: 61 LLERLDL------KKDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRD 114
Query: 510 EKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEI 569
+ R+ + +++ATPGR+ K V+ +VLDEAD++L Q + + + + +
Sbjct: 115 DIMRLDDTVHVVIATPGRI-LDLIKKGVAKVDHVQMIVLDEADKLLSQDFVQIMEDIILT 173
Query: 570 LKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQID 605
L K + Q +L SAT +VQ+ L+ P +I+
Sbjct: 174 LPKNR---QILLYSATFPLSVQKFMNSHLEKPYEIN 206
|
| >d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo sapiens) [TaxId: 9606]} Length = 206 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEAD box RNA helicase rck/p54 species: Human (Homo sapiens) [TaxId: 9606]
Score = 82.3 bits (202), Expect = 2e-18
Identities = 58/179 (32%), Positives = 98/179 (54%), Gaps = 10/179 (5%)
Query: 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYA 60
M + + +Q+ SI L G D+L R++ G+GK+ AY IP++++L +KD I A
Sbjct: 21 MGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDL------KKDNIQA 74
Query: 61 VIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLL 120
++I+PTRELALQ +I ++ K TGG ++ + R+ + +++ATPGR +
Sbjct: 75 MVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGR-I 133
Query: 121 DHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTP 179
K V+ +VLDEAD++L Q + + + + + L K + Q +L SAT
Sbjct: 134 LDLIKKGVAKVDHVQMIVLDEADKLLSQDFVQIMEDIILTLPKNR---QILLYSATFPL 189
|
| >d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo sapiens) [TaxId: 9606]} Length = 206 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEAD box RNA helicase rck/p54 species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.7 bits (125), Expect = 3e-08
Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 3/76 (3%)
Query: 182 CWCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLTPA 241
K V+ +VLDEAD++L Q + + + + + L K + Q +L SAT +
Sbjct: 134 LDLIKKGVAKVDHVQMIVLDEADKLLSQDFVQIMEDIILTLPKNR---QILLYSATFPLS 190
Query: 242 VQRLAGMTLQNPIQID 257
VQ+ L+ P +I+
Sbjct: 191 VQKFMNSHLEKPYEIN 206
|
| >d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} Length = 207 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Spliceosome RNA helicase BAT1 (UAP56) species: Human (Homo sapiens) [TaxId: 9606]
Score = 111 bits (277), Expect = 3e-28
Identities = 52/216 (24%), Positives = 110/216 (50%), Gaps = 12/216 (5%)
Query: 390 TSYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIP 449
+ + +F + P + + + + + VQ I + G DVL ++++G GKT + +
Sbjct: 1 SGFRDF-LLKPELLRAIVD-CGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLA 58
Query: 450 IIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKS 509
+Q+L+ + ++ +++ TRELA Q + + + K + + GG +K
Sbjct: 59 TLQQLEPVTGQV------SVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKK 112
Query: 510 EKARIRK-GISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLE 568
++ ++K I+V TPGR+L ++L ++H +LDE D++L+Q R + E
Sbjct: 113 DEEVLKKNCPHIVVGTPGRILALA-RNKSLNLKHIKHFILDECDKMLEQLDMRRDVQ--E 169
Query: 569 ILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQI 604
I + + Q ++ SATL+ ++ + +Q+P++I
Sbjct: 170 IFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEI 205
|
| >d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} Length = 207 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Spliceosome RNA helicase BAT1 (UAP56) species: Human (Homo sapiens) [TaxId: 9606]
Score = 84.9 bits (209), Expect = 3e-19
Identities = 47/180 (26%), Positives = 90/180 (50%), Gaps = 10/180 (5%)
Query: 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYA 60
+ VQ I + G DVL ++++G GKT + + +Q+L+ + + +
Sbjct: 19 CGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQ------VSV 72
Query: 61 VIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRK-GISILVATPGRL 119
+++ TRELA Q + + + K + + GG +K ++ ++K I+V TPGR+
Sbjct: 73 LVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRI 132
Query: 120 LDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTP 179
L ++L ++H +LDE D++L+Q R + EI + + Q ++ SATL+
Sbjct: 133 LALA-RNKSLNLKHIKHFILDECDKMLEQLDMRRDVQ--EIFRMTPHEKQVMMFSATLSK 189
|
| >d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} Length = 207 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Spliceosome RNA helicase BAT1 (UAP56) species: Human (Homo sapiens) [TaxId: 9606]
Score = 53.7 bits (128), Expect = 1e-08
Identities = 21/80 (26%), Positives = 42/80 (52%), Gaps = 3/80 (3%)
Query: 178 TPAT-CWCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSA 236
TP ++L ++H +LDE D++L+Q R + EI + + Q ++ SA
Sbjct: 128 TPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQ--EIFRMTPHEKQVMMFSA 185
Query: 237 TLTPAVQRLAGMTLQNPIQI 256
TL+ ++ + +Q+P++I
Sbjct: 186 TLSKEIRPVCRKFMQDPMEI 205
|
| >d1wrba1 c.37.1.19 (A:164-401) putative ATP-dependent RNA helicase VlgB {Flatworm (Dugesia japonica) [TaxId: 6161]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase VlgB species: Flatworm (Dugesia japonica) [TaxId: 6161]
Score = 111 bits (278), Expect = 4e-28
Identities = 72/236 (30%), Positives = 116/236 (49%), Gaps = 8/236 (3%)
Query: 373 NVPTRRLKPVSEALFAPTSYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDV 432
++P P A +++E + P ++ N+ + + T +Q+ +I IL+ D+
Sbjct: 4 SIPVSVTGPDYSATNVIENFDEL-KLDPTIRNNILL-ASYQRPTPIQKNAIPAILEHRDI 61
Query: 433 LVRSQTGSGKTLAYAIPIIQKLQEMRP---KISRKDGIYAVIILPTRELALQTLEIFTKL 489
+ +QTGSGKT A+ IPII L + S+ +I+ PTRELA+Q L K
Sbjct: 62 MACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAYPKCLILAPTRELAIQILSESQKF 121
Query: 490 CKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLD 549
T + + GG S+ ++ G +LVATPGR L + +++VLD
Sbjct: 122 SL-NTPLRSCVVYGGADTHSQIREVQMGCHLLVATPGR-LVDFIEKNKISLEFCKYIVLD 179
Query: 550 EADRILDQGYERDIAEFLEILKKQKP-QFQSILLSATLTPAVQRLAGMTLQNPIQI 604
EADR+LD G+E I + +E Q+++ SAT +Q+LA L N I +
Sbjct: 180 EADRMLDMGFEPQIRKIIEESNMPSGINRQTLMFSATFPKEIQKLAADFLYNYIFM 235
|
| >d1wrba1 c.37.1.19 (A:164-401) putative ATP-dependent RNA helicase VlgB {Flatworm (Dugesia japonica) [TaxId: 6161]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase VlgB species: Flatworm (Dugesia japonica) [TaxId: 6161]
Score = 85.0 bits (209), Expect = 6e-19
Identities = 60/184 (32%), Positives = 92/184 (50%), Gaps = 6/184 (3%)
Query: 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRP---KISRKDG 57
+ + T +Q+ +I IL+ D++ +QTGSGKT A+ IPII L + S+
Sbjct: 39 ASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAY 98
Query: 58 IYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPG 117
+I+ PTRELA+Q L K T + + GG S+ ++ G +LVATPG
Sbjct: 99 PKCLILAPTRELAIQILSESQKFSL-NTPLRSCVVYGGADTHSQIREVQMGCHLLVATPG 157
Query: 118 RLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKP-QFQSILLSAT 176
R L + +++VLDEADR+LD G+E I + +E Q+++ SAT
Sbjct: 158 R-LVDFIEKNKISLEFCKYIVLDEADRMLDMGFEPQIRKIIEESNMPSGINRQTLMFSAT 216
Query: 177 LTPA 180
Sbjct: 217 FPKE 220
|
| >d1wrba1 c.37.1.19 (A:164-401) putative ATP-dependent RNA helicase VlgB {Flatworm (Dugesia japonica) [TaxId: 6161]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase VlgB species: Flatworm (Dugesia japonica) [TaxId: 6161]
Score = 53.8 bits (128), Expect = 2e-08
Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
Query: 182 CWCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKP-QFQSVLLSATLTP 240
+ +++VLDEADR+LD G+E I + +E Q+++ SAT
Sbjct: 160 VDFIEKNKISLEFCKYIVLDEADRMLDMGFEPQIRKIIEESNMPSGINRQTLMFSATFPK 219
Query: 241 AVQRLAGMTLQNPIQI 256
+Q+LA L N I +
Sbjct: 220 EIQKLAADFLYNYIFM 235
|
| >d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo sapiens) [TaxId: 9606]} Length = 218 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Initiation factor 4a species: Human (Homo sapiens) [TaxId: 9606]
Score = 110 bits (276), Expect = 4e-28
Identities = 55/216 (25%), Positives = 103/216 (47%), Gaps = 12/216 (5%)
Query: 390 TSYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIP 449
S+++ + + + + + + +QQ +I P + G DV+ ++Q+G+GKT +AI
Sbjct: 12 DSFDDM-NLSESLLRGIYA-YGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAIS 69
Query: 450 IIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKS 509
I+Q+++ A+++ PTRELA Q ++ L + + G
Sbjct: 70 ILQQIEL------DLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAE 123
Query: 510 EKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEI 569
+ + I+V TPGR+ D L ++ VLDEAD +L +G++ I + +
Sbjct: 124 VQKLQMEAPHIIVGTPGRVFDMLNR-RYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQK 182
Query: 570 LKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQID 605
L Q +LLSAT+ V + +++PI+I
Sbjct: 183 LNSNT---QVVLLSATMPSDVLEVTKKFMRDPIRIL 215
|
| >d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo sapiens) [TaxId: 9606]} Length = 218 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Initiation factor 4a species: Human (Homo sapiens) [TaxId: 9606]
Score = 84.9 bits (209), Expect = 4e-19
Identities = 50/179 (27%), Positives = 86/179 (48%), Gaps = 10/179 (5%)
Query: 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYA 60
+ + +QQ +I P + G DV+ ++Q+G+GKT +AI I+Q+++ A
Sbjct: 30 YGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIEL------DLKATQA 83
Query: 61 VIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLL 120
+++ PTRELA Q ++ L + + G + + I+V TPGR+
Sbjct: 84 LVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVF 143
Query: 121 DHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTP 179
D L ++ VLDEAD +L +G++ I + + L Q +LLSAT+
Sbjct: 144 DMLNR-RYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNT---QVVLLSATMPS 198
|
| >d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo sapiens) [TaxId: 9606]} Length = 218 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Initiation factor 4a species: Human (Homo sapiens) [TaxId: 9606]
Score = 53.3 bits (127), Expect = 2e-08
Identities = 24/81 (29%), Positives = 39/81 (48%), Gaps = 4/81 (4%)
Query: 178 TPAT-CWCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSA 236
TP + L ++ VLDEAD +L +G++ I + + L Q VLLSA
Sbjct: 138 TPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNT---QVVLLSA 194
Query: 237 TLTPAVQRLAGMTLQNPIQID 257
T+ V + +++PI+I
Sbjct: 195 TMPSDVLEVTKKFMRDPIRIL 215
|
| >d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: Dengue virus helicase species: Dengue virus type 2 [TaxId: 11060]
Score = 102 bits (255), Expect = 2e-24
Identities = 39/357 (10%), Positives = 87/357 (24%), Gaps = 85/357 (23%)
Query: 426 ILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEI 485
++ G+GKT Y I+++ K G+ +I+ PTR +A + E
Sbjct: 6 FRKKRLTIMDLHPGAGKTKRYLPAIVREA--------IKRGLRTLILAPTRVVAAEMEEA 57
Query: 486 FTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEH 545
L + G ++ + + ++
Sbjct: 58 LRGLPIRYQTPAIRAEHTGREI------------VDLMCHATFTMRLL--SPIRVPNYNL 103
Query: 546 LVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQID 605
+++DEA A + + + I ++AT + +
Sbjct: 104 IIMDEAHFTDPAS---IAARGYISTRVEMGEAAGIFMTATPPGSRDPFPQSNAPIMDEER 160
Query: 606 AADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMA 665
++ + + D + K + F+
Sbjct: 161 EIPERSWNSGHEWV----------------------------------TDFKGKTVWFVP 186
Query: 666 TQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLD 725
+ + L +L SE + ++ TD++ G +
Sbjct: 187 SIKAGNDIAACLR---KNGKKVIQLSRKTFDSEYIKTRTNDWD----FVVTTDISEMGAN 239
Query: 726 L-------------------PLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLF 763
I+ P + + R GR R +
Sbjct: 240 FKAERVIDPRRCMKPVILTDGEERVILAGPMPVTHSSAAQRRGRVGRNPKNENDQYI 296
|
| >d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: Dengue virus helicase species: Dengue virus type 2 [TaxId: 11060]
Score = 78.8 bits (193), Expect = 2e-16
Identities = 34/298 (11%), Positives = 82/298 (27%), Gaps = 39/298 (13%)
Query: 17 ILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEI 76
++ G+GKT Y I+++ K G+ +I+ PTR +A + E
Sbjct: 6 FRKKRLTIMDLHPGAGKTKRYLPAIVREA--------IKRGLRTLILAPTRVVAAEMEEA 57
Query: 77 FTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEH 136
L + G ++ + + ++
Sbjct: 58 LRGLPIRYQTPAIRAEHTGREI------------VDLMCHATFTMRLL--SPIRVPNYNL 103
Query: 137 LVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSAT------------LTPATCWC 184
+++DEA A + + + I ++AT
Sbjct: 104 IIMDEAHFTDPAS---IAARGYISTRVEMGEAAGIFMTATPPGSRDPFPQSNAPIMDEER 160
Query: 185 KHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLTPAVQR 244
+ E S E + + + + + L+K + + LS +
Sbjct: 161 EIPERSWNSGHEWVTDFKGKTVWFVPSIKAGNDIAACLRKNG--KKVIQLSRKTFDSEYI 218
Query: 245 LAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALASFILGKCQ 302
+ + + + ++ P + I+T + R++ +
Sbjct: 219 KTRTNDWDFVVTTDISEMGANFKAERVIDPRRCMKPVILTDGEERVILAGPMPVTHSS 276
|
| >d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 206 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative ATP-dependent RNA helicase DHH1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 96.6 bits (239), Expect = 3e-23
Identities = 50/215 (23%), Positives = 91/215 (42%), Gaps = 13/215 (6%)
Query: 391 SYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPI 450
++E+F + + + E + + +Q+ +I + G D+L R++ G+GKT A+ IP
Sbjct: 2 TFEDF-YLKRELLMGIFE-AGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIP- 58
Query: 451 IQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSE 510
K+ K +I+ + I TGG ++ +
Sbjct: 59 ------TLEKVKPKLNKIQALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDD 112
Query: 511 KARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEIL 570
R+ + + ILV TPGR+ + S ++DEAD++L + ++ +IL
Sbjct: 113 ILRLNETVHILVGTPGRV-LDLASRKVADLSDCSLFIMDEADKMLSRDFKTI---IEQIL 168
Query: 571 KKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQID 605
P QS+L SAT V+ L P +I+
Sbjct: 169 SFLPPTHQSLLFSATFPLTVKEFMVKHLHKPYEIN 203
|
| >d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 206 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative ATP-dependent RNA helicase DHH1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 69.2 bits (168), Expect = 7e-14
Identities = 43/179 (24%), Positives = 75/179 (41%), Gaps = 11/179 (6%)
Query: 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYA 60
+ + +Q+ +I + G D+L R++ G+GKT A+ IP K+ K
Sbjct: 19 AGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIP-------TLEKVKPKLNKIQ 71
Query: 61 VIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLL 120
+I+ + I TGG ++ + R+ + + ILV TPGR +
Sbjct: 72 ALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNETVHILVGTPGR-V 130
Query: 121 DHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTP 179
+ S ++DEAD++L + ++ +IL P QS+L SAT
Sbjct: 131 LDLASRKVADLSDCSLFIMDEADKMLSRDFKTI---IEQILSFLPPTHQSLLFSATFPL 186
|
| >d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 206 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative ATP-dependent RNA helicase DHH1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 51.9 bits (123), Expect = 7e-08
Identities = 21/81 (25%), Positives = 34/81 (41%), Gaps = 4/81 (4%)
Query: 178 TPATC-WCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSA 236
TP + S ++DEAD++L + ++ +IL P QS+L SA
Sbjct: 126 TPGRVLDLASRKVADLSDCSLFIMDEADKMLSRDFKTI---IEQILSFLPPTHQSLLFSA 182
Query: 237 TLTPAVQRLAGMTLQNPIQID 257
T V+ L P +I+
Sbjct: 183 TFPLTVKEFMVKHLHKPYEIN 203
|
| >d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli [TaxId: 562]} Length = 206 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecQ helicase domain species: Escherichia coli [TaxId: 562]
Score = 96.2 bits (238), Expect = 4e-23
Identities = 50/215 (23%), Positives = 81/215 (37%), Gaps = 18/215 (8%)
Query: 394 EFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQK 453
E + K+ L E Q Q+ I +L G D LV TG GK+L Y IP +
Sbjct: 5 EVLNLESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLL 64
Query: 454 LQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKAR 513
V++ P L ++ + + S T ++++
Sbjct: 65 NGL------------TVVVSPLISLMKDQVDQL-QANGVAAACLNSTQTREQQLEVMTGC 111
Query: 514 IRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYE-RDIAEFLEILKK 572
I +L P RL+ E L L +DEA I G++ R L L++
Sbjct: 112 RTGQIRLLYIAPERLMLDNFL-EHLAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQ 170
Query: 573 QKPQFQSILLSATLTPAVQR--LAGMTLQNP-IQI 604
+ P + L+AT ++ + + L +P IQI
Sbjct: 171 RFPTLPFMALTATADDTTRQDIVRLLGLNDPLIQI 205
|
| >d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli [TaxId: 562]} Length = 206 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecQ helicase domain species: Escherichia coli [TaxId: 562]
Score = 83.5 bits (205), Expect = 9e-19
Identities = 42/180 (23%), Positives = 66/180 (36%), Gaps = 15/180 (8%)
Query: 3 ITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVI 62
Q Q+ I +L G D LV TG GK+L Y IP + V+
Sbjct: 23 YQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGL------------TVV 70
Query: 63 ILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDH 122
+ P L ++ + + S T ++++ I +L P RL+
Sbjct: 71 VSPLISLMKDQVDQL-QANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLD 129
Query: 123 CKHTETLKFSKVEHLVLDEADRILDQGYE-RDIAEFLEILKKQKPQFQSILLSATLTPAT 181
E L L +DEA I G++ R L L+++ P + L+AT T
Sbjct: 130 NFL-EHLAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTT 188
|
| >d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli [TaxId: 562]} Length = 206 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecQ helicase domain species: Escherichia coli [TaxId: 562]
Score = 46.2 bits (108), Expect = 5e-06
Identities = 20/79 (25%), Positives = 33/79 (41%), Gaps = 4/79 (5%)
Query: 182 CWCKHTETLKFSKVEHLVLDEADRILDQGYE-RDIAEFLEILKKQKPQFQSVLLSATLTP 240
E L L +DEA I G++ R L L+++ P + L+AT
Sbjct: 127 MLDNFLEHLAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADD 186
Query: 241 AVQR--LAGMTLQNP-IQI 256
++ + + L +P IQI
Sbjct: 187 TTRQDIVRLLGLNDPLIQI 205
|
| >d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 237 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Helicase-like "domain" of reverse gyrase domain: Helicase-like "domain" of reverse gyrase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Score = 93.0 bits (230), Expect = 8e-22
Identities = 34/242 (14%), Positives = 70/242 (28%), Gaps = 31/242 (12%)
Query: 374 VPTRRLKPVSEALFAPTSYEEFP--GIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGD 431
+ A A S FP + + + + + +Q++ + IL
Sbjct: 3 AAAAAAAAAAAAAAAAASLCLFPEDFLLKEFVEFFRKC--VGEPRAIQKMWAKRILRKES 60
Query: 432 VLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCK 491
+ TG GKT + + + +I PT L +Q E K +
Sbjct: 61 FAATAPTGVGKTSFGLAMSLFLALKGKR---------CYVIFPTSLLVIQAAETIRKYAE 111
Query: 492 SFTWIVPS-----WLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHL 546
+ ++ K + + I++ T L H + + +
Sbjct: 112 KAGVGTENLIGYYHGRIPKREKENFMQNLRNFKIVITTTQFLSKHYRE-----LGHFDFI 166
Query: 547 VLDEADRILDQGYERD--------IAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTL 598
+D+ D IL D + + + ++ +AT + L
Sbjct: 167 FVDDVDAILKASKNVDKLLHLLGFHYDLKTKSWVGEARGCLMVSTATAKKGKKAELFRQL 226
Query: 599 QN 600
N
Sbjct: 227 LN 228
|
| >d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 237 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Helicase-like "domain" of reverse gyrase domain: Helicase-like "domain" of reverse gyrase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Score = 89.6 bits (221), Expect = 1e-20
Identities = 27/190 (14%), Positives = 58/190 (30%), Gaps = 27/190 (14%)
Query: 3 ITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVI 62
+ + +Q++ + IL + TG GKT + + + +
Sbjct: 41 VGEPRAIQKMWAKRILRKESFAATAPTGVGKTSFGLAMSLFLALKGKR---------CYV 91
Query: 63 ILPTRELALQTLEIFTKLCKSFTWIVPS-----WLTGGEKMKSEKARIRKGISILVATPG 117
I PT L +Q E K + + ++ K + + I++ T
Sbjct: 92 IFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRNFKIVITTTQ 151
Query: 118 RLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERD--------IAEFLEILKKQKPQFQ 169
L H + + + +D+ D IL D + + +
Sbjct: 152 FLSKHYRE-----LGHFDFIFVDDVDAILKASKNVDKLLHLLGFHYDLKTKSWVGEARGC 206
Query: 170 SILLSATLTP 179
++ +AT
Sbjct: 207 LMVSTATAKK 216
|
| >d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 237 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Helicase-like "domain" of reverse gyrase domain: Helicase-like "domain" of reverse gyrase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Score = 46.4 bits (109), Expect = 6e-06
Identities = 10/83 (12%), Positives = 23/83 (27%), Gaps = 11/83 (13%)
Query: 178 TPATCWCKHTETLKFSKVEHLVLDEADRILDQGYERD--------IAEFLEILKKQKPQF 229
T + + + + +D+ D IL D + + +
Sbjct: 149 TTQFLSKHYR---ELGHFDFIFVDDVDAILKASKNVDKLLHLLGFHYDLKTKSWVGEARG 205
Query: 230 QSVLLSATLTPAVQRLAGMTLQN 252
++ +AT + L N
Sbjct: 206 CLMVSTATAKKGKKAELFRQLLN 228
|
| >d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} Length = 202 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Hel308 helicase species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 88.5 bits (218), Expect = 2e-20
Identities = 40/203 (19%), Positives = 76/203 (37%), Gaps = 18/203 (8%)
Query: 393 EEFP-GIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPII 451
EE I + L E I ++ Q +++ + G ++L+ T +GKTL + ++
Sbjct: 4 EELAESISSYAVGILKE-EGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMV 62
Query: 452 QKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEK 511
++ + + ++P R LA + E F K K I S +
Sbjct: 63 REAIKGGKSL---------YVVPLRALAGEKYESFKKWEKIGLRIGISTGDYESRD---- 109
Query: 512 ARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILK 571
I+V T + ++ V LV+DE + + + + ++
Sbjct: 110 -EHLGDCDIIVTTSEKADSLIRN-RASWIKAVSCLVVDEIHLLDSEKRGATLEILVTKMR 167
Query: 572 KQKPQFQSILLSATLTPAVQRLA 594
+ + I LSAT P V +A
Sbjct: 168 RMNKALRVIGLSATA-PNVTEIA 189
|
| >d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} Length = 202 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Hel308 helicase species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 81.9 bits (201), Expect = 3e-18
Identities = 32/180 (17%), Positives = 66/180 (36%), Gaps = 15/180 (8%)
Query: 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYA 60
I ++ Q +++ + G ++L+ T +GKTL + ++++ + +
Sbjct: 21 EGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIKGGKSL-------- 72
Query: 61 VIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLL 120
++P R LA + E F K K I S + I+V T +
Sbjct: 73 -YVVPLRALAGEKYESFKKWEKIGLRIGISTGDYESRD-----EHLGDCDIIVTTSEKAD 126
Query: 121 DHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPA 180
++ V LV+DE + + + + +++ + I LSAT
Sbjct: 127 SLIRN-RASWIKAVSCLVVDEIHLLDSEKRGATLEILVTKMRRMNKALRVIGLSATAPNV 185
|
| >d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} Length = 202 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Hel308 helicase species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 40.3 bits (93), Expect = 4e-04
Identities = 12/65 (18%), Positives = 23/65 (35%), Gaps = 1/65 (1%)
Query: 182 CWCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLTPA 241
V LV+DE + + + + +++ + + LSAT P
Sbjct: 126 DSLIRNRASWIKAVSCLVVDEIHLLDSEKRGATLEILVTKMRRMNKALRVIGLSATA-PN 184
Query: 242 VQRLA 246
V +A
Sbjct: 185 VTEIA 189
|
| >d1q0ua_ c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR {Bacillus stearothermophilus [TaxId: 1422]} Length = 209 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Probable DEAD box RNA helicase YqfR species: Bacillus stearothermophilus [TaxId: 1422]
Score = 87.4 bits (215), Expect = 4e-20
Identities = 53/215 (24%), Positives = 95/215 (44%), Gaps = 9/215 (4%)
Query: 390 TSYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIP 449
T + F PF+ + + + + T +Q+ I L G ++ +SQTG+GKT AY +P
Sbjct: 1 TQFTRF-PFQPFIIEAIKT-LRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLP 58
Query: 450 IIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKS 509
I++K ++P+ + + TK C IV L GG +
Sbjct: 59 IMEK---IKPERAEVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQK 115
Query: 510 EKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEI 569
++ I++ TPGR+ + + L LV+DEAD +LD G+ D+ +
Sbjct: 116 ALEKLNVQPHIVIGTPGRI-NDFIREQALDVHTAHILVVDEADLMLDMGFITDVDQIAAR 174
Query: 570 LKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQI 604
+ K Q ++ SAT+ ++ ++NP +
Sbjct: 175 MPKDL---QMLVFSATIPEKLKPFLKKYMENPTFV 206
|
| >d1q0ua_ c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR {Bacillus stearothermophilus [TaxId: 1422]} Length = 209 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Probable DEAD box RNA helicase YqfR species: Bacillus stearothermophilus [TaxId: 1422]
Score = 59.3 bits (142), Expect = 2e-10
Identities = 47/179 (26%), Positives = 80/179 (44%), Gaps = 7/179 (3%)
Query: 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYA 60
+ + T +Q+ I L G ++ +SQTG+GKT AY +PI++K ++P+ + +
Sbjct: 19 LRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEK---IKPERAEVQAVIT 75
Query: 61 VIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLL 120
TK C IV L GG + ++ I++ TPGR +
Sbjct: 76 APTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKLNVQPHIVIGTPGR-I 134
Query: 121 DHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTP 179
+ + L LV+DEAD +LD G+ D+ + + K Q ++ SAT+
Sbjct: 135 NDFIREQALDVHTAHILVVDEADLMLDMGFITDVDQIAARMPKDL---QMLVFSATIPE 190
|
| >d1q0ua_ c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR {Bacillus stearothermophilus [TaxId: 1422]} Length = 209 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Probable DEAD box RNA helicase YqfR species: Bacillus stearothermophilus [TaxId: 1422]
Score = 47.7 bits (112), Expect = 2e-06
Identities = 18/75 (24%), Positives = 33/75 (44%), Gaps = 3/75 (4%)
Query: 182 CWCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLTPA 241
+ L LV+DEAD +LD G+ D+ + + K Q ++ SAT+
Sbjct: 135 NDFIREQALDVHTAHILVVDEADLMLDMGFITDVDQIAARMPKDL---QMLVFSATIPEK 191
Query: 242 VQRLAGMTLQNPIQI 256
++ ++NP +
Sbjct: 192 LKPFLKKYMENPTFV 206
|
| >d1hv8a2 c.37.1.19 (A:211-365) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 155 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative DEAD box RNA helicase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 83.9 bits (206), Expect = 2e-19
Identities = 42/163 (25%), Positives = 82/163 (50%), Gaps = 12/163 (7%)
Query: 625 LKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGEN 684
++Q ++ R AL + +++E LVF T+ +L
Sbjct: 4 IEQSYVEVNENERFEALCRLL--------KNKEFYGLVFCKTKRDTKELASMLRD---IG 52
Query: 685 IAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDY 744
+HG +SQS+R +V + F+ K +LI TDV +RG+D+ ++ ++ Y P + Y
Sbjct: 53 FKAGAIHGDLSQSQREKVIRLFKQKKIRILIATDVMSRGIDVNDLNCVINYHLPQNPESY 112
Query: 745 VHRVGRTARVGHEGSSLLFLIPSEVKLVEELQNR-RIRIEEIK 786
+HR+GRT R G +G ++ + E K + ++ +++I+++K
Sbjct: 113 MHRIGRTGRAGKKGKAISIINRREYKKLRYIERAMKLKIKKLK 155
|
| >d1a1va2 c.37.1.14 (A:326-624) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Length = 299 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Score = 87.3 bits (216), Expect = 3e-19
Identities = 26/154 (16%), Positives = 42/154 (27%), Gaps = 21/154 (13%)
Query: 631 VTPPKLRLVALASF----ILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIA 686
V P + VAL++ GK + + + L+F ++ D L I
Sbjct: 6 VPHPNIEEVALSTTGEIPFYGKAIPLEVIKGGRHLIFCHSKKKCDELAAKLV---ALGIN 62
Query: 687 FFKLHGSMSQSERT----------EVFKTFRSVKSGVLICTDVAARG---LDLPLVDWIV 733
+ + S + T + +I + L I
Sbjct: 63 AVAYYRGLDVSVIPTSGDVVVVATDALMTGFTGDFDSVIDCNTCVTQTVDFSLDPTFTIE 122
Query: 734 QYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPS 767
T P + R GRT R G G
Sbjct: 123 TTTLPQDAVSRTQRRGRTGR-GKPGIYRFVAPGE 155
|
| >d1gkub2 c.37.1.16 (B:251-498) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 248 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Helicase-like "domain" of reverse gyrase domain: Helicase-like "domain" of reverse gyrase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Score = 79.0 bits (194), Expect = 7e-17
Identities = 25/139 (17%), Positives = 48/139 (34%), Gaps = 19/139 (13%)
Query: 654 EDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSVKSGV 713
E + +++ T + A+ E L K + + + ++ F +
Sbjct: 22 EKLGTGGIIYARTGEEAEEIYESLK---------NKFRIGIVTATKKGDYEKFVEGEIDH 72
Query: 714 LICT----DVAARGLDLP-LVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPSE 768
LI T RGLDLP + + V P + + + + LL +
Sbjct: 73 LIGTAHYYGTLVRGLDLPERIRFAVFVGCP----SFRVTIEDIDSLSPQMVKLLAYLYRN 128
Query: 769 VKLVEEL-QNRRIRIEEIK 786
V +E L I+E++
Sbjct: 129 VDEIERLLPAVERHIDEVR 147
|
| >d1fuka_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 162 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Initiation factor 4a species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 72.6 bits (177), Expect = 2e-15
Identities = 42/162 (25%), Positives = 78/162 (48%), Gaps = 12/162 (7%)
Query: 626 KQHFI-VTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGEN 684
KQ ++ V + + L + ++ ++F T+ + T L +
Sbjct: 2 KQFYVNVEEEEYKYECLTDLY-------DSISVTQAVIFCNTRRKVEELTTKLRN---DK 51
Query: 685 IAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDY 744
++ + Q ER + K FRS S +LI TD+ ARG+D+ V ++ Y P++ +Y
Sbjct: 52 FTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANKENY 111
Query: 745 VHRVGRTARVGHEGSSLLFLIPSEVKLVEELQNRR-IRIEEI 785
+HR+GR R G +G ++ F+ +V + EL+ +IEE+
Sbjct: 112 IHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYSTQIEEL 153
|
| >d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} Length = 286 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase PF2015 species: Pyrococcus furiosus [TaxId: 2261]
Score = 74.9 bits (183), Expect = 3e-15
Identities = 30/126 (23%), Positives = 52/126 (41%), Gaps = 12/126 (9%)
Query: 652 VNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGS--------MSQSERTEVF 703
+ + SK++VF ++ A ++ + I + G +SQ E+ +
Sbjct: 156 LQRKQNSKIIVFTNYRETAKKIVNE---LVKDGIKAKRFVGQASKENDRGLSQREQKLIL 212
Query: 704 KTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLF 763
F + VL+ T V GLD+P VD +V Y S+ + R GRT R G ++
Sbjct: 213 DEFARGEFNVLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGR-HMPGRVIIL 271
Query: 764 LIPSEV 769
+
Sbjct: 272 MAKGTR 277
|
| >d2j0sa2 c.37.1.19 (A:244-411) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} Length = 168 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Probable ATP-dependent RNA helicase DDX48 species: Human (Homo sapiens) [TaxId: 9606]
Score = 68.0 bits (165), Expect = 9e-14
Identities = 49/167 (29%), Positives = 87/167 (52%), Gaps = 12/167 (7%)
Query: 623 DSLKQHFI-VTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVL 681
+ +KQ F+ V + + L + ++ ++F T+ D+ TE +
Sbjct: 6 EGIKQFFVAVEREEWKFDTLCDLY-------DTLTITQAVIFCNTKRKVDWLTEKMRE-- 56
Query: 682 GENIAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSS 741
N +HG M Q ER + K FRS S VLI TDV ARGLD+P V I+ Y P++
Sbjct: 57 -ANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNR 115
Query: 742 TDYVHRVGRTARVGHEGSSLLFLIPSEVKLVEELQNR-RIRIEEIKL 787
Y+HR+GR+ R G +G ++ F+ +++++ +++ +I+E+ +
Sbjct: 116 ELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPM 162
|
| >d2fwra1 c.37.1.19 (A:257-456) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DNA repair protein RAD25 species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 65.3 bits (158), Expect = 1e-12
Identities = 26/199 (13%), Positives = 71/199 (35%), Gaps = 18/199 (9%)
Query: 566 FLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSL 625
F+ + + ++ +++ + + ++ +I A D +
Sbjct: 12 FVPLAEDERVEYEKREKVYKQFLRARGITLRRAEDFNKIVMASGYDERAYE---ALRAWE 68
Query: 626 KQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENI 685
+ I K ++ L + + K+++F ++ +++
Sbjct: 69 EARRIAFNSKNKIRKLREIL-------ERHRKDKIIIFTRHNELVYRISKVFLIP----- 116
Query: 686 AFFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYV 745
+ S+ ER E+ + FR+ + ++ + V G+D+P + V + S+ +Y+
Sbjct: 117 ---AITHRTSREEREEILEGFRTGRFRAIVSSQVLDEGIDVPDANVGVIMSGSGSAREYI 173
Query: 746 HRVGRTARVGHEGSSLLFL 764
R+GR R +
Sbjct: 174 QRLGRILRPSKGKKEAVLY 192
|
| >d1jr6a_ c.37.1.14 (A:) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Length = 138 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Score = 62.0 bits (150), Expect = 4e-12
Identities = 28/142 (19%), Positives = 45/142 (31%), Gaps = 19/142 (13%)
Query: 634 PKLRLVALASF----ILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFK 689
P + VAL++ GK + + + L+F ++ D L
Sbjct: 8 PNIEEVALSTTGEIPFYGKAIPLEVIKGGRHLIFCHSKKKCDELAAKLV----------A 57
Query: 690 LHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLP---LVDWIVQYTAPSSSTDYVH 746
L + R + V++ TD G ++D P +
Sbjct: 58 LGINAVAYYRGLDVSVIPTNGDVVVVATDALMTGFTGDFDSVIDCNTSDGKPQDAVSRTQ 117
Query: 747 RVGRTARVGHEGSSLLFLIPSE 768
R GRT R G G F+ P E
Sbjct: 118 RRGRTGR-GKPG-IYRFVAPGE 137
|
| >d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase PF2015 species: Pyrococcus furiosus [TaxId: 2261]
Score = 60.2 bits (144), Expect = 9e-11
Identities = 33/184 (17%), Positives = 65/184 (35%), Gaps = 15/184 (8%)
Query: 411 NITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAV 470
++ Q Q++ + L+ TG GKTL + +L K G +
Sbjct: 6 DLIQPRIYQEVIYAKCK-ETNCLIVLPTGLGKTLIAMMIAEYRL--------TKYGGKVL 56
Query: 471 IILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLD 530
++ PT+ L LQ E F +L + + E+ + ++ + ++
Sbjct: 57 MLAPTKPLVLQHAESFRRLFNLPPEK---IVALTGEKSPEERSKAWARAKVIVATPQTIE 113
Query: 531 HCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPAV 590
+ + V +V DEA R + I K+Q I L+A+
Sbjct: 114 NDLLAGRISLEDVSLIVFDEAHRAVGNYAYVFI---AREYKRQAKNPLVIGLTASPGSTP 170
Query: 591 QRLA 594
+++
Sbjct: 171 EKIM 174
|
| >d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase PF2015 species: Pyrococcus furiosus [TaxId: 2261]
Score = 58.2 bits (139), Expect = 4e-10
Identities = 35/196 (17%), Positives = 66/196 (33%), Gaps = 16/196 (8%)
Query: 2 NITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAV 61
++ Q Q++ + L+ TG GKTL + +L K G +
Sbjct: 6 DLIQPRIYQEVIYAKCK-ETNCLIVLPTGLGKTLIAMMIAEYRL--------TKYGGKVL 56
Query: 62 IILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLD 121
++ PT+ L LQ E F +L + + E+ + ++ + ++
Sbjct: 57 MLAPTKPLVLQHAESFRRLFNLPPEK---IVALTGEKSPEERSKAWARAKVIVATPQTIE 113
Query: 122 HCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPA- 180
+ + V +V DEA R + I K+Q I L+A+
Sbjct: 114 NDLLAGRISLEDVSLIVFDEAHRAVGNYAYVFI---AREYKRQAKNPLVIGLTASPGSTP 170
Query: 181 TCWCKHTETLKFSKVE 196
+ L +E
Sbjct: 171 EKIMEVINNLGIEHIE 186
|
| >d1oywa3 c.37.1.19 (A:207-406) RecQ helicase domain {Escherichia coli [TaxId: 562]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecQ helicase domain species: Escherichia coli [TaxId: 562]
Score = 57.0 bits (136), Expect = 1e-09
Identities = 25/178 (14%), Positives = 67/178 (37%), Gaps = 10/178 (5%)
Query: 628 HFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAF 687
+++ L L ++ E +++ ++ + + + + + I+
Sbjct: 8 RYMLMEKFKPLDQLMRYV-------QEQRGKSGIIYCNSRAKVE---DTAARLQSKGISA 57
Query: 688 FKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHR 747
H + + R +V + F+ +++ T G++ P V ++V + P + Y
Sbjct: 58 AAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQE 117
Query: 748 VGRTARVGHEGSSLLFLIPSEVKLVEELQNRRIRIEEIKLKDCLQNLLSVKMEGDLSR 805
GR R G ++LF P+++ + + + + ++ N + E R
Sbjct: 118 TGRAGRDGLPAEAMLFYDPADMAWLRRCLEEKPQGQLQDIERHKLNAMGAFAEAQTCR 175
|
| >d1t5la2 c.37.1.19 (A:415-595) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]} Length = 181 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Nucleotide excision repair enzyme UvrB species: Bacillus caldotenax [TaxId: 1395]
Score = 56.0 bits (134), Expect = 2e-09
Identities = 28/151 (18%), Positives = 53/151 (35%), Gaps = 11/151 (7%)
Query: 645 ILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFK 704
++G+ + E E ++ + + D + I LH + ER E+ +
Sbjct: 20 LIGEIRERVERNERTLVTTLTKKMAEDLT----DYLKEAGIKVAYLHSEIKTLERIEIIR 75
Query: 705 TFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHR--VGRTARVGHEGSSLL 762
R K VL+ ++ GLD+P V + A R + R + +
Sbjct: 76 DLRLGKYDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNANGHV 135
Query: 763 FLIPSEV-----KLVEELQNRRIRIEEIKLK 788
+ + ++E + RR EE K
Sbjct: 136 IMYADTITKSMEIAIQETKRRRAIQEEYNRK 166
|
| >d2p6ra4 c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} Length = 201 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Hel308 helicase species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 49.9 bits (118), Expect = 2e-07
Identities = 25/159 (15%), Positives = 49/159 (30%), Gaps = 12/159 (7%)
Query: 626 KQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENI 685
+ + A + E+E + + + L+ + +
Sbjct: 41 GGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMS---RKLAECVRKGA 97
Query: 686 AFFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPS------ 739
AF H + +R V FR V++ T A G++LP IV+
Sbjct: 98 AFH--HAGLLNGQRRVVEDAFRRGNIKVVVATPTLAAGVNLPARRVIVRSLYRFDGYSKR 155
Query: 740 -SSTDYVHRVGRTARVGHEGSSLLFLIPSEVKLVEELQN 777
++Y GR R G + +I + ++
Sbjct: 156 IKVSEYKQMAGRAGRPGMDERGEAIIIVGKRDREIAVKR 194
|
| >d1t5ia_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} Length = 168 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Spliceosome RNA helicase BAT1 (UAP56) species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.9 bits (115), Expect = 3e-07
Identities = 37/163 (22%), Positives = 78/163 (47%), Gaps = 12/163 (7%)
Query: 625 LKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGEN 684
L+Q+++ + L + + E +++++F+ + +LL +N
Sbjct: 2 LQQYYVKLKDNEKNRKLFDLL-------DVLEFNQVVIFVKSVQRCIALAQLLVE---QN 51
Query: 685 IAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDY 744
+H M Q ER ++ F+ + +L+ T++ RG+D+ V+ Y P S Y
Sbjct: 52 FPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTY 111
Query: 745 VHRVGRTARVGHEGSSLLFLIPS-EVKLVEELQNR-RIRIEEI 785
+HRV R R G +G ++ F+ + K++ ++Q+R + I E+
Sbjct: 112 LHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISEL 154
|
| >d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Length = 136 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Score = 39.5 bits (91), Expect = 4e-04
Identities = 18/154 (11%), Positives = 34/154 (22%), Gaps = 29/154 (18%)
Query: 23 VLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCK 82
+ + TGSGK+ P G +++ P+ L + K
Sbjct: 11 AHLHAPTGSGKSTKV------------PAAYAAQGYKVLVLNPSVAATLGFGA---YMSK 55
Query: 83 SFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEA 142
+ + ++ DE
Sbjct: 56 AHGVDPNIRTGVRTITTGSPITYSTYG------------KFLADGGCSGGAYDIIICDEC 103
Query: 143 DRILDQGYERDIAEFLEILKKQKPQFQSILLSAT 176
D I L+ + +L +AT
Sbjct: 104 HS-TDATSILGIGTVLDQAET-AGARLVVLATAT 135
|
| >d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Length = 136 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Score = 39.5 bits (91), Expect = 4e-04
Identities = 18/154 (11%), Positives = 34/154 (22%), Gaps = 29/154 (18%)
Query: 432 VLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCK 491
+ + TGSGK+ P G +++ P+ L + K
Sbjct: 11 AHLHAPTGSGKSTKV------------PAAYAAQGYKVLVLNPSVAATLGFGA---YMSK 55
Query: 492 SFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEA 551
+ + ++ DE
Sbjct: 56 AHGVDPNIRTGVRTITTGSPITYSTYG------------KFLADGGCSGGAYDIIICDEC 103
Query: 552 DRILDQGYERDIAEFLEILKKQKPQFQSILLSAT 585
D I L+ + +L +AT
Sbjct: 104 HS-TDATSILGIGTVLDQAET-AGARLVVLATAT 135
|
| >d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} Length = 140 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: YFV helicase domain species: Yellow fever virus [TaxId: 11089]
Score = 38.1 bits (87), Expect = 0.001
Identities = 26/161 (16%), Positives = 51/161 (31%), Gaps = 27/161 (16%)
Query: 17 ILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEI 76
+ G ++ G+GKT + I+ + + +++ PTR + + E
Sbjct: 4 LKKGMTTVLDFHPGAGKTRRFLPQILAECARR--------RLRTLVLAPTRVVLSEMKEA 55
Query: 77 FTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEH 136
F L F S G ++ + E + E
Sbjct: 56 FHGLDVKFHTQAFSAHGSGREVIDAMCHATL--------------TYRMLEPTRVVNWEV 101
Query: 137 LVLDEADRILDQGYE-RDIAEFLEILKKQKPQFQSILLSAT 176
+++DEA + R A + + IL++AT
Sbjct: 102 IIMDEAHFLDPASIAARGWAA--HRARANESAT--ILMTAT 138
|
| >d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} Length = 140 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: YFV helicase domain species: Yellow fever virus [TaxId: 11089]
Score = 38.1 bits (87), Expect = 0.001
Identities = 26/161 (16%), Positives = 51/161 (31%), Gaps = 27/161 (16%)
Query: 426 ILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEI 485
+ G ++ G+GKT + I+ + + +++ PTR + + E
Sbjct: 4 LKKGMTTVLDFHPGAGKTRRFLPQILAECARR--------RLRTLVLAPTRVVLSEMKEA 55
Query: 486 FTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEH 545
F L F S G ++ + E + E
Sbjct: 56 FHGLDVKFHTQAFSAHGSGREVIDAMCHATL--------------TYRMLEPTRVVNWEV 101
Query: 546 LVLDEADRILDQGYE-RDIAEFLEILKKQKPQFQSILLSAT 585
+++DEA + R A + + IL++AT
Sbjct: 102 IIMDEAHFLDPASIAARGWAA--HRARANESAT--ILMTAT 138
|
| >d1yksa2 c.37.1.14 (A:325-623) YFV helicase domain {Yellow fever virus [TaxId: 11089]} Length = 299 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: YFV helicase domain species: Yellow fever virus [TaxId: 11089]
Score = 39.6 bits (92), Expect = 0.001
Identities = 19/147 (12%), Positives = 43/147 (29%), Gaps = 26/147 (17%)
Query: 655 DEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSVKSGVL 714
++ F+ + A+ L + L+ + E + K +
Sbjct: 34 ADKRPTAWFLPSIRAANVMAASLR---KAGKSVVVLNRKTFEREYPTIK----QKKPDFI 86
Query: 715 ICTDVAARGLDLPLVDWI------------------VQYTAPSSSTDYVHRVGRTARV-G 755
+ TD+A G +L + + ++ S++ R GR R
Sbjct: 87 LATDIAEMGANLCVERVLDCRTAFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGRNPN 146
Query: 756 HEGSSLLFLIPSEVKLVEELQNRRIRI 782
+G S + P+ + +
Sbjct: 147 RDGDSYYYSEPTSENNAHHVCWLEASM 173
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 930 | |||
| d2j0sa1 | 222 | Probable ATP-dependent RNA helicase DDX48 {Human ( | 100.0 | |
| d1veca_ | 206 | DEAD box RNA helicase rck/p54 {Human (Homo sapiens | 100.0 | |
| d1t6na_ | 207 | Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo | 100.0 | |
| d2g9na1 | 218 | Initiation factor 4a {Human (Homo sapiens) [TaxId: | 100.0 | |
| d1wrba1 | 238 | putative ATP-dependent RNA helicase VlgB {Flatworm | 100.0 | |
| d1qdea_ | 212 | Initiation factor 4a {Baker's yeast (Saccharomyces | 100.0 | |
| d1hv8a1 | 208 | Putative DEAD box RNA helicase {Archaeon Methanoco | 100.0 | |
| d1s2ma1 | 206 | Putative ATP-dependent RNA helicase DHH1 {Baker's | 100.0 | |
| d2j0sa1 | 222 | Probable ATP-dependent RNA helicase DDX48 {Human ( | 100.0 | |
| d1veca_ | 206 | DEAD box RNA helicase rck/p54 {Human (Homo sapiens | 100.0 | |
| d1q0ua_ | 209 | Probable DEAD box RNA helicase YqfR {Bacillus stea | 100.0 | |
| d1t6na_ | 207 | Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo | 100.0 | |
| d2bmfa2 | 305 | Dengue virus helicase {Dengue virus type 2 [TaxId: | 99.98 | |
| d2g9na1 | 218 | Initiation factor 4a {Human (Homo sapiens) [TaxId: | 99.97 | |
| d1wrba1 | 238 | putative ATP-dependent RNA helicase VlgB {Flatworm | 99.97 | |
| d1qdea_ | 212 | Initiation factor 4a {Baker's yeast (Saccharomyces | 99.97 | |
| d1hv8a1 | 208 | Putative DEAD box RNA helicase {Archaeon Methanoco | 99.97 | |
| d1s2ma1 | 206 | Putative ATP-dependent RNA helicase DHH1 {Baker's | 99.97 | |
| d1q0ua_ | 209 | Probable DEAD box RNA helicase YqfR {Bacillus stea | 99.95 | |
| d2j0sa2 | 168 | Probable ATP-dependent RNA helicase DDX48 {Human ( | 99.95 | |
| d1fuka_ | 162 | Initiation factor 4a {Baker's yeast (Saccharomyces | 99.95 | |
| d1s2ma2 | 171 | Putative ATP-dependent RNA helicase DHH1 {Baker's | 99.95 | |
| d1hv8a2 | 155 | Putative DEAD box RNA helicase {Archaeon Methanoco | 99.94 | |
| d2rb4a1 | 168 | ATP-dependent RNA helicase DDX25 {Human (Homo sapi | 99.94 | |
| d1oywa3 | 200 | RecQ helicase domain {Escherichia coli [TaxId: 562 | 99.93 | |
| d1t5ia_ | 168 | Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo | 99.92 | |
| d1oywa2 | 206 | RecQ helicase domain {Escherichia coli [TaxId: 562 | 99.92 | |
| d2p6ra3 | 202 | Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 | 99.92 | |
| d1gkub1 | 237 | Helicase-like "domain" of reverse gyrase {Archaeon | 99.9 | |
| d2p6ra3 | 202 | Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 | 99.9 | |
| d1c4oa2 | 174 | Nucleotide excision repair enzyme UvrB {Thermus th | 99.89 | |
| d1gkub1 | 237 | Helicase-like "domain" of reverse gyrase {Archaeon | 99.89 | |
| d1t5la2 | 181 | Nucleotide excision repair enzyme UvrB {Bacillus c | 99.89 | |
| d1oywa2 | 206 | RecQ helicase domain {Escherichia coli [TaxId: 562 | 99.88 | |
| d1wp9a1 | 200 | putative ATP-dependent RNA helicase PF2015 {Pyroco | 99.84 | |
| d1wp9a1 | 200 | putative ATP-dependent RNA helicase PF2015 {Pyroco | 99.84 | |
| d1jr6a_ | 138 | HCV helicase domain {Human hepatitis C virus (HCV) | 99.83 | |
| d2eyqa3 | 233 | Transcription-repair coupling factor, TRCF {Escher | 99.76 | |
| d2p6ra4 | 201 | Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 | 99.76 | |
| d1wp9a2 | 286 | putative ATP-dependent RNA helicase PF2015 {Pyroco | 99.75 | |
| d1gm5a3 | 264 | RecG helicase domain {Thermotoga maritima [TaxId: | 99.74 | |
| d2bmfa2 | 305 | Dengue virus helicase {Dengue virus type 2 [TaxId: | 99.73 | |
| d1gm5a4 | 206 | RecG helicase domain {Thermotoga maritima [TaxId: | 99.72 | |
| d1gkub2 | 248 | Helicase-like "domain" of reverse gyrase {Archaeon | 99.71 | |
| d2eyqa3 | 233 | Transcription-repair coupling factor, TRCF {Escher | 99.67 | |
| d1a1va2 | 299 | HCV helicase domain {Human hepatitis C virus (HCV) | 99.66 | |
| d1gm5a3 | 264 | RecG helicase domain {Thermotoga maritima [TaxId: | 99.65 | |
| d1rifa_ | 282 | DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665] | 99.62 | |
| d2fz4a1 | 206 | DNA repair protein RAD25 {Archaeoglobus fulgidus [ | 99.62 | |
| d2eyqa5 | 211 | Transcription-repair coupling factor, TRCF {Escher | 99.62 | |
| d2fwra1 | 200 | DNA repair protein RAD25 {Archaeoglobus fulgidus [ | 99.61 | |
| d1rifa_ | 282 | DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665] | 99.61 | |
| d2fz4a1 | 206 | DNA repair protein RAD25 {Archaeoglobus fulgidus [ | 99.6 | |
| d1yksa1 | 140 | YFV helicase domain {Yellow fever virus [TaxId: 11 | 99.59 | |
| d1yksa1 | 140 | YFV helicase domain {Yellow fever virus [TaxId: 11 | 99.56 | |
| d1a1va1 | 136 | HCV helicase domain {Human hepatitis C virus (HCV) | 99.54 | |
| d1a1va1 | 136 | HCV helicase domain {Human hepatitis C virus (HCV) | 99.54 | |
| d1tf5a4 | 175 | Translocation ATPase SecA, nucleotide-binding doma | 99.35 | |
| d1z5za1 | 244 | Helicase of the SNF2/Rad54 hamily {Sulfolobus solf | 99.22 | |
| d1z3ix1 | 346 | Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxI | 99.2 | |
| d1yksa2 | 299 | YFV helicase domain {Yellow fever virus [TaxId: 11 | 99.15 | |
| d1nkta4 | 219 | Translocation ATPase SecA, nucleotide-binding doma | 98.95 | |
| d1z3ix2 | 298 | Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxI | 98.93 | |
| d1tf5a3 | 273 | Translocation ATPase SecA, nucleotide-binding doma | 98.88 | |
| d1nkta3 | 288 | Translocation ATPase SecA, nucleotide-binding doma | 98.87 | |
| d1z3ix2 | 298 | Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxI | 98.81 | |
| d1z63a1 | 230 | Helicase of the SNF2/Rad54 hamily {Sulfolobus solf | 98.77 | |
| d1z63a1 | 230 | Helicase of the SNF2/Rad54 hamily {Sulfolobus solf | 98.66 | |
| d1tf5a3 | 273 | Translocation ATPase SecA, nucleotide-binding doma | 98.19 | |
| d1nkta3 | 288 | Translocation ATPase SecA, nucleotide-binding doma | 97.95 | |
| d1w36d1 | 359 | Exodeoxyribonuclease V alpha chain (RecD) {Escheri | 97.83 | |
| d1w36d1 | 359 | Exodeoxyribonuclease V alpha chain (RecD) {Escheri | 97.47 | |
| d1uaaa1 | 306 | DEXX box DNA helicase {Escherichia coli, RepD [Tax | 97.02 | |
| d1uaaa1 | 306 | DEXX box DNA helicase {Escherichia coli, RepD [Tax | 96.96 | |
| d1hv8a2 | 155 | Putative DEAD box RNA helicase {Archaeon Methanoco | 96.77 | |
| d1s2ma2 | 171 | Putative ATP-dependent RNA helicase DHH1 {Baker's | 96.72 | |
| d1pjra1 | 318 | DEXX box DNA helicase {Bacillus stearothermophilus | 96.62 | |
| d1pjra1 | 318 | DEXX box DNA helicase {Bacillus stearothermophilus | 96.44 | |
| d1t5ia_ | 168 | Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo | 96.14 | |
| d1fuka_ | 162 | Initiation factor 4a {Baker's yeast (Saccharomyces | 96.02 | |
| d2j0sa2 | 168 | Probable ATP-dependent RNA helicase DDX48 {Human ( | 95.7 | |
| d2rb4a1 | 168 | ATP-dependent RNA helicase DDX25 {Human (Homo sapi | 95.69 | |
| d1a5ta2 | 207 | delta prime subunit of DNA polymerase III, N-domai | 95.68 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 95.64 | |
| g1qhh.1 | 623 | DEXX box DNA helicase {Bacillus stearothermophilus | 95.53 | |
| d1a5ta2 | 207 | delta prime subunit of DNA polymerase III, N-domai | 95.52 | |
| d1njfa_ | 239 | delta prime subunit of DNA polymerase III, N-domai | 95.29 | |
| g1qhh.1 | 623 | DEXX box DNA helicase {Bacillus stearothermophilus | 95.23 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 95.05 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 94.88 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 94.79 | |
| d1t5la1 | 413 | Nucleotide excision repair enzyme UvrB {Bacillus c | 94.61 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 93.9 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 93.76 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 93.61 | |
| d2eyqa5 | 211 | Transcription-repair coupling factor, TRCF {Escher | 93.43 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 93.37 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 93.29 | |
| d2gnoa2 | 198 | gamma subunit of DNA polymerase III, N-domain {The | 93.07 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 92.98 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 92.68 | |
| d1t5la1 | 413 | Nucleotide excision repair enzyme UvrB {Bacillus c | 92.35 | |
| d2gnoa2 | 198 | gamma subunit of DNA polymerase III, N-domain {The | 92.07 | |
| d1oywa3 | 200 | RecQ helicase domain {Escherichia coli [TaxId: 562 | 92.05 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 92.0 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 91.21 | |
| d1njfa_ | 239 | delta prime subunit of DNA polymerase III, N-domai | 90.07 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 89.92 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 89.82 | |
| d1c4oa1 | 408 | Nucleotide excision repair enzyme UvrB {Thermus th | 88.64 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 88.46 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 88.19 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 88.16 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 88.05 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 87.89 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 87.68 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 87.56 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 87.26 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 87.14 | |
| d1c4oa2 | 174 | Nucleotide excision repair enzyme UvrB {Thermus th | 87.12 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 86.68 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 86.02 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 85.95 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 85.75 | |
| d1jr6a_ | 138 | HCV helicase domain {Human hepatitis C virus (HCV) | 85.73 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 84.74 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 84.64 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 84.6 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 84.17 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 83.67 | |
| d1xbta1 | 133 | Thymidine kinase, TK1, N-terminal domain {Human (H | 83.58 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 83.52 | |
| d1e9ra_ | 433 | Bacterial conjugative coupling protein TrwB {Esche | 83.48 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 83.38 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 82.99 | |
| d1w44a_ | 321 | NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | 82.95 | |
| d1t5la2 | 181 | Nucleotide excision repair enzyme UvrB {Bacillus c | 81.65 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 81.46 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 80.98 | |
| d1gkub2 | 248 | Helicase-like "domain" of reverse gyrase {Archaeon | 80.31 | |
| d1c4oa1 | 408 | Nucleotide excision repair enzyme UvrB {Thermus th | 80.16 |
| >d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Probable ATP-dependent RNA helicase DDX48 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.1e-39 Score=329.40 Aligned_cols=206 Identities=27% Similarity=0.477 Sum_probs=186.4
Q ss_pred CCCCCCCCCCCCHHHHHHHHhcCCCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCe
Q psy15524 388 APTSYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGI 467 (930)
Q Consensus 388 ~~~~f~~l~~l~~~~~~~l~~~~~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~ 467 (930)
...+|++| +|++.++++|.+ +||..|||+|+++||.+++|+|++++||||||||+||++|+++.+.. ...++
T Consensus 15 ~~~sF~~l-~L~~~l~~~L~~-~g~~~pt~IQ~~aIp~il~g~dvi~~a~TGSGKTlayllPil~~l~~------~~~~~ 86 (222)
T d2j0sa1 15 VTPTFDTM-GLREDLLRGIYA-YGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDI------QVRET 86 (222)
T ss_dssp CCCSGGGG-CCCHHHHHHHHH-HTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHTCCT------TSCSC
T ss_pred CCCCHHHC-CCCHHHHHHHHH-CCCCCCCHHHHHHHHHHHCCCCeEEEcCcchhhhhhhcccccccccc------cccCc
Confidence 34589999 999999999985 79999999999999999999999999999999999999999998754 24567
Q ss_pred eEEEEccCHHHHHHHHHHHHHhhccCCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhccCCcccccceEEE
Q psy15524 468 YAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLV 547 (930)
Q Consensus 468 ~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lV 547 (930)
+++|++||||||.|+++.+.++.... .+....++||.....+...+..+++|+|+||||+.+++.. ..+.+++++++|
T Consensus 87 ~~lil~PtreLa~Qi~~~~~~l~~~~-~i~~~~~~g~~~~~~~~~~l~~~~~Ilv~TPgrl~~~~~~-~~~~~~~l~~lV 164 (222)
T d2j0sa1 87 QALILAPTRELAVQIQKGLLALGDYM-NVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRR-RSLRTRAIKMLV 164 (222)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTT-TCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHT-TSSCCTTCCEEE
T ss_pred eeEEecchHHHHHHHHHHHHHHhCcc-ceeEEEEeecccchhhHHHhccCCeEEeCCCCcHHhcccc-cccccccceeee
Confidence 89999999999999999999988754 4567778899888888888889999999999999998876 567889999999
Q ss_pred EecchhhhhcCcHHHHHHHHHHHhhcCccceEEEEccccCHHHHHHHhhhcCCCEEEEc
Q psy15524 548 LDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDA 606 (930)
Q Consensus 548 lDEah~l~~~g~~~~l~~i~~~l~~~~~~~q~vl~SAT~~~~~~~l~~~~~~~~~~i~~ 606 (930)
+||||++++.||...+..|++.+++ .+|+++||||+++++.++++.++++|+.|.+
T Consensus 165 lDEaD~ll~~~f~~~i~~I~~~l~~---~~Q~ilfSAT~~~~v~~l~~~~l~~Pv~I~V 220 (222)
T d2j0sa1 165 LDEADEMLNKGFKEQIYDVYRYLPP---ATQVVLISATLPHEILEMTNKFMTDPIRILV 220 (222)
T ss_dssp EETHHHHTSTTTHHHHHHHHTTSCT---TCEEEEEESCCCHHHHTTGGGTCSSCEEECC
T ss_pred ecchhHhhhcCcHHHHHHHHHhCCC---CCEEEEEEEeCCHHHHHHHHHHCCCCEEEEE
Confidence 9999999999999999999877764 7899999999999999999999999998865
|
| >d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEAD box RNA helicase rck/p54 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=4.6e-39 Score=322.92 Aligned_cols=204 Identities=33% Similarity=0.548 Sum_probs=186.7
Q ss_pred CCCCCCCCCCHHHHHHHHhcCCCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeE
Q psy15524 390 TSYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYA 469 (930)
Q Consensus 390 ~~f~~l~~l~~~~~~~l~~~~~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~ 469 (930)
.+|+++ +|++.++++|.+ +||+.|||+|+++||.+++|+|++++||||||||+||++|+++++.. ...++++
T Consensus 3 ~~F~~l-~L~~~l~~~l~~-~g~~~pt~iQ~~aip~il~g~dvl~~a~TGsGKTlayllP~l~~~~~------~~~~~~~ 74 (206)
T d1veca_ 3 NEFEDY-CLKRELLMGIFE-MGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDL------KKDNIQA 74 (206)
T ss_dssp SSGGGS-CCCHHHHHHHHT-TTCCSCCHHHHHHHHHHHTTCCEEEECCSSSTTHHHHHHHHHHHCCT------TSCSCCE
T ss_pred CChhcc-CcCHHHHHHHHH-CCCCCCCHHHHHHHHHHHcCCCEEeeccCccccccccccchhhcccc------cccCcce
Confidence 579999 999999999985 89999999999999999999999999999999999999999988754 3567889
Q ss_pred EEEccCHHHHHHHHHHHHHhhccCCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhccCCcccccceEEEEe
Q psy15524 470 VIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLD 549 (930)
Q Consensus 470 lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlD 549 (930)
+|++||+|||.|+++.+..+.............|+.....+...+..+++|+|+||||+.+++.. ....+++++++|+|
T Consensus 75 lil~pt~el~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~ivv~TPgrl~~~~~~-~~~~~~~l~~lVlD 153 (206)
T d1veca_ 75 MVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKK-GVAKVDHVQMIVLD 153 (206)
T ss_dssp EEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHT-TCSCCTTCCEEEEE
T ss_pred EEEeecchhhHHHHHHHHHHhhcccCcccccccCCccHHHHHHHHHhccCeEEeCCccccccccc-hhccccccceEEEe
Confidence 99999999999999999998877776777788888888888888888999999999999999876 56778999999999
Q ss_pred cchhhhhcCcHHHHHHHHHHHhhcCccceEEEEccccCHHHHHHHhhhcCCCEEEE
Q psy15524 550 EADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQID 605 (930)
Q Consensus 550 Eah~l~~~g~~~~l~~i~~~l~~~~~~~q~vl~SAT~~~~~~~l~~~~~~~~~~i~ 605 (930)
|||+|++.||...+..|++.+++ ++|+++||||+++++.++++.++++|+.|+
T Consensus 154 EaD~ll~~~f~~~i~~I~~~~~~---~~Q~~l~SAT~~~~v~~l~~~~l~~P~~I~ 206 (206)
T d1veca_ 154 EADKLLSQDFVQIMEDIILTLPK---NRQILLYSATFPLSVQKFMNSHLEKPYEIN 206 (206)
T ss_dssp THHHHTSTTTHHHHHHHHHHSCT---TCEEEEEESCCCHHHHHHHHHHCSSCEEEC
T ss_pred ccccccccchHHHHHHHHHhCCC---CCEEEEEEecCCHHHHHHHHHHCCCCEEEC
Confidence 99999999999999999988865 789999999999999999999999998763
|
| >d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Spliceosome RNA helicase BAT1 (UAP56) species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=4.6e-38 Score=315.86 Aligned_cols=203 Identities=25% Similarity=0.479 Sum_probs=182.6
Q ss_pred CCCCCCCCCHHHHHHHHhcCCCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEE
Q psy15524 391 SYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAV 470 (930)
Q Consensus 391 ~f~~l~~l~~~~~~~l~~~~~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~l 470 (930)
+|++| +|++.++++|.+ +||++|||+|+++||.+++|+|++++||||||||+||++|+++.+.. ...+++++
T Consensus 2 ~F~dl-~L~~~l~~~l~~-~g~~~pt~iQ~~aip~il~g~dvl~~A~TGsGKTla~~lp~l~~~~~------~~~~~~~l 73 (207)
T d1t6na_ 2 GFRDF-LLKPELLRAIVD-CGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEP------VTGQVSVL 73 (207)
T ss_dssp CSTTS-CCCHHHHHHHHH-TTCCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCC------CTTCCCEE
T ss_pred Ccccc-CcCHHHHHHHHH-CCCCCCCHHHHHHHHHHHcCCCeEEEeccccccccccccceeeeecc------cCCCceEE
Confidence 69999 999999999985 89999999999999999999999999999999999999999987653 34578899
Q ss_pred EEccCHHHHHHHHHHHHHhhccCCCcceEEEeCCCchHHHHHHH-hcCCcEEEECchhHHHhhhccCCcccccceEEEEe
Q psy15524 471 IILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARI-RKGISILVATPGRLLDHCKHTETLKFSKVEHLVLD 549 (930)
Q Consensus 471 il~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~-~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlD 549 (930)
|++||||||.|+++.+..+...........++||.....+...+ ..+++|+|+|||++.+++++ ..+.+++++++|+|
T Consensus 74 il~PtreL~~qi~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~ilI~TP~rl~~~~~~-~~~~l~~l~~lVlD 152 (207)
T d1t6na_ 74 VMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARN-KSLNLKHIKHFILD 152 (207)
T ss_dssp EECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHT-TSSCCTTCCEEEEE
T ss_pred EEeccchhhHHHHHHHHHHHhhCCCceeEEEeccccHHHHHHHHHhcCCCEEEeCcchhhhhccC-Cceeccccceeehh
Confidence 99999999999999999999877777788888998877776666 45789999999999999886 56789999999999
Q ss_pred cchhhhh-cCcHHHHHHHHHHHhhcCccceEEEEccccCHHHHHHHhhhcCCCEEEE
Q psy15524 550 EADRILD-QGYERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQID 605 (930)
Q Consensus 550 Eah~l~~-~g~~~~l~~i~~~l~~~~~~~q~vl~SAT~~~~~~~l~~~~~~~~~~i~ 605 (930)
|||++++ .||...+..|++.++. ++|+++||||+++.+.++++.++++|+.|.
T Consensus 153 EaD~ll~~~~~~~~i~~I~~~~~~---~~Q~il~SAT~~~~v~~l~~~~l~~P~~I~ 206 (207)
T d1t6na_ 153 ECDKMLEQLDMRRDVQEIFRMTPH---EKQVMMFSATLSKEIRPVCRKFMQDPMEIF 206 (207)
T ss_dssp SHHHHHSSHHHHHHHHHHHHTSCS---SSEEEEEESCCCTTTHHHHHTTCSSCEEEE
T ss_pred hhhhhhhcCCcHHHHHHHHHhCCC---CCEEEEEeeeCCHHHHHHHHHHCCCCEEEe
Confidence 9999998 4898888888877754 889999999999999999999999998875
|
| >d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Initiation factor 4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.3e-37 Score=314.22 Aligned_cols=205 Identities=28% Similarity=0.459 Sum_probs=177.4
Q ss_pred CCCCCCCCCCHHHHHHHHhcCCCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeE
Q psy15524 390 TSYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYA 469 (930)
Q Consensus 390 ~~f~~l~~l~~~~~~~l~~~~~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~ 469 (930)
.+|+++ +|++.+.++|.+ +||..|||+|+++||.++.|+|++++||||||||++|++|+++.+.. ...++++
T Consensus 12 ~sF~~l-~L~~~l~~~L~~-~g~~~pt~iQ~~aip~il~g~dvl~~a~TGsGKTlayllp~l~~i~~------~~~~~~a 83 (218)
T d2g9na1 12 DSFDDM-NLSESLLRGIYA-YGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIEL------DLKATQA 83 (218)
T ss_dssp CCGGGS-CCCHHHHHHHHH-HTCCSCCHHHHHHHHHHHHTCCEEEECCTTSSHHHHHHHHHHHHCCT------TCCSCCE
T ss_pred CCHHHC-CCCHHHHHHHHH-CCCCCCCHHHHHHHHHHHcCCCEEEEcccchhhhhhhhhhhhheecc------cccCccE
Confidence 579999 999999999975 89999999999999999999999999999999999999999998854 3468899
Q ss_pred EEEccCHHHHHHHHHHHHHhhccCCCcceEEEeCCCchHHH-HHHHhcCCcEEEECchhHHHhhhccCCcccccceEEEE
Q psy15524 470 VIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSE-KARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVL 548 (930)
Q Consensus 470 lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~-~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVl 548 (930)
||++||+|||.|+++.+..+....... ...+.++...... .....++++|+|+|||++.+++.+ ....+++++++|+
T Consensus 84 lil~Pt~eL~~Q~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~IvV~TP~rl~~~l~~-~~~~~~~l~~lVl 161 (218)
T d2g9na1 84 LVLAPTRELAQQIQKVVMALGDYMGAS-CHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNR-RYLSPKYIKMFVL 161 (218)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTTTTCC-EEEECC--CCCSTTTSSSSCCCSEEEECHHHHHHHHHT-TSSCSTTCCEEEE
T ss_pred EEEcccchhhhhHHHHHhhhcccccee-EEeeecccchhHHHHHHhcCCCEEEEeCChhHHHHHhc-CCcccccceEEEe
Confidence 999999999999999999998876544 3444454433332 223345789999999999999976 5567899999999
Q ss_pred ecchhhhhcCcHHHHHHHHHHHhhcCccceEEEEccccCHHHHHHHhhhcCCCEEEEcc
Q psy15524 549 DEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAA 607 (930)
Q Consensus 549 DEah~l~~~g~~~~l~~i~~~l~~~~~~~q~vl~SAT~~~~~~~l~~~~~~~~~~i~~~ 607 (930)
||||++++.||...+..|++.+++ ++|++++|||+++.+.++++.++++|+.|.+.
T Consensus 162 DEaD~ll~~~f~~~~~~Il~~~~~---~~Q~il~SAT~~~~v~~~~~~~l~~pv~i~v~ 217 (218)
T d2g9na1 162 DEADEMLSRGFKDQIYDIFQKLNS---NTQVVLLSATMPSDVLEVTKKFMRDPIRILVK 217 (218)
T ss_dssp ESHHHHHHTTCHHHHHHHHHHSCT---TCEEEEEESCCCHHHHHHHHHHCSSCEEEECC
T ss_pred eecchhhcCchHHHHHHHHHhCCC---CCeEEEEEecCCHHHHHHHHHHCCCCEEEEEe
Confidence 999999999999999999888865 78999999999999999999999999988763
|
| >d1wrba1 c.37.1.19 (A:164-401) putative ATP-dependent RNA helicase VlgB {Flatworm (Dugesia japonica) [TaxId: 6161]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase VlgB species: Flatworm (Dugesia japonica) [TaxId: 6161]
Probab=100.00 E-value=1.3e-36 Score=311.64 Aligned_cols=214 Identities=32% Similarity=0.467 Sum_probs=187.1
Q ss_pred CCCCCCCCCCCHHHHHHHHhcCCCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcc---cCCCC
Q psy15524 389 PTSYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPK---ISRKD 465 (930)
Q Consensus 389 ~~~f~~l~~l~~~~~~~l~~~~~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~---~~~~~ 465 (930)
-.+|+++ +|++++.++|. .+||..|||+|.++||.+++|+|++++||||||||+||++|+++++...... .....
T Consensus 20 ~~~F~~l-~l~~~l~~~L~-~~g~~~pt~iQ~~~ip~il~g~dvvi~a~TGsGKTlayllp~l~~l~~~~~~~~~~~~~~ 97 (238)
T d1wrba1 20 IENFDEL-KLDPTIRNNIL-LASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTA 97 (238)
T ss_dssp CCSSGGG-SCCCSTTTTTT-TTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCB
T ss_pred cCCHHHC-CCCHHHHHHHH-HCCCCCCCHHHHHHhhhhhCCCCEEEECCCCCCcceeeHHHHHHHHHhcccccccccCCC
Confidence 3689999 99999999997 5899999999999999999999999999999999999999999998764321 22345
Q ss_pred CeeEEEEccCHHHHHHHHHHHHHhhccCCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhccCCcccccceE
Q psy15524 466 GIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEH 545 (930)
Q Consensus 466 ~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~ 545 (930)
+++++|++||+|||.|+++.+..+....+ +....++|+.....+.+....+++|+|+|||+|.+++.. ..+.+.++++
T Consensus 98 ~~~alil~pt~el~~q~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~ivV~TP~~l~~~~~~-~~~~l~~v~~ 175 (238)
T d1wrba1 98 YPKCLILAPTRELAIQILSESQKFSLNTP-LRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEK-NKISLEFCKY 175 (238)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHTTSS-CCEEEECSSSCSHHHHHHHSSCCSEEEECHHHHHHHHHT-TSBCCTTCCE
T ss_pred CceEEEeccchhhhcchheeeeecccCCC-cEEEEEeccchhhHHHhhcccCCceeecCHHHHHhHHcc-Cceeccccce
Confidence 78999999999999999999998887655 456667888888888888888999999999999999876 4567899999
Q ss_pred EEEecchhhhhcCcHHHHHHHHHHHhhc-CccceEEEEccccCHHHHHHHhhhcCCCEEEEc
Q psy15524 546 LVLDEADRILDQGYERDIAEFLEILKKQ-KPQFQSILLSATLTPAVQRLAGMTLQNPIQIDA 606 (930)
Q Consensus 546 lVlDEah~l~~~g~~~~l~~i~~~l~~~-~~~~q~vl~SAT~~~~~~~l~~~~~~~~~~i~~ 606 (930)
+|+||||++++.||...+..|++.+... ..++|++++|||+++.+..+++.++++|++|.+
T Consensus 176 lViDEaD~ll~~~f~~~i~~Il~~~~~~~~~~~Q~il~SAT~~~~v~~l~~~~~~~p~~i~v 237 (238)
T d1wrba1 176 IVLDEADRMLDMGFEPQIRKIIEESNMPSGINRQTLMFSATFPKEIQKLAADFLYNYIFMTV 237 (238)
T ss_dssp EEEETHHHHHHTTCHHHHHHHHHSSCCCCGGGCEEEEEESSCCHHHHHHHHHHCSSCEEEEE
T ss_pred eeeehhhhhhhhccHHHHHHHHHHhcCCCCCCCEEEEEeeeCCHHHHHHHHHHCCCCEEEEe
Confidence 9999999999999999999998876532 236799999999999999999999999998865
|
| >d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Initiation factor 4a species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=2.9e-36 Score=303.26 Aligned_cols=202 Identities=28% Similarity=0.497 Sum_probs=172.3
Q ss_pred CCCCCCCCCCHHHHHHHHhcCCCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeE
Q psy15524 390 TSYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYA 469 (930)
Q Consensus 390 ~~f~~l~~l~~~~~~~l~~~~~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~ 469 (930)
.+|++| +|++.++++|.+ +||++|||+|+++||.++.|+|++++||||||||++|++|+++++.. ...++++
T Consensus 10 ~sF~~l-~l~~~l~~~L~~-~g~~~pt~iQ~~aip~il~g~dvl~~a~TGsGKT~a~~lp~i~~l~~------~~~~~~~ 81 (212)
T d1qdea_ 10 YKFDDM-ELDENLLRGVFG-YGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDT------SVKAPQA 81 (212)
T ss_dssp CCGGGG-TCCHHHHHHHHH-HTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCT------TCCSCCE
T ss_pred cChhhC-CCCHHHHHHHHH-CCCCCCCHHHHHHHHHHHcCCCEEeecccccchhhhhHhhhHhhhhc------cCCCcce
Confidence 579999 999999999985 89999999999999999999999999999999999999999998754 3468899
Q ss_pred EEEccCHHHHHHHHHHHHHhhccCCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhccCCcccccceEEEEe
Q psy15524 470 VIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLD 549 (930)
Q Consensus 470 lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlD 549 (930)
+|++||++|+.|++..+..+..... .......|+.....+... .++++|+|+|||++.+++.. ..+.+++++++|+|
T Consensus 82 lil~pt~el~~q~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~IvI~TP~~l~~~~~~-~~~~l~~l~~lVlD 158 (212)
T d1qdea_ 82 LMLAPTRELALQIQKVVMALAFHMD-IKVHACIGGTSFVEDAEG-LRDAQIVVGTPGRVFDNIQR-RRFRTDKIKMFILD 158 (212)
T ss_dssp EEECSSHHHHHHHHHHHHHHTTTSC-CCEEEECC-----------CTTCSEEEECHHHHHHHHHT-TSSCCTTCCEEEEE
T ss_pred EEEcccHHHhhhhhhhhcccccccc-cceeeEeeccchhHHHHH-hcCCcEEEECCCcccccccc-CceecCcceEEeeh
Confidence 9999999999999999988876544 344455555554444443 35789999999999999877 56789999999999
Q ss_pred cchhhhhcCcHHHHHHHHHHHhhcCccceEEEEccccCHHHHHHHhhhcCCCEEEE
Q psy15524 550 EADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQID 605 (930)
Q Consensus 550 Eah~l~~~g~~~~l~~i~~~l~~~~~~~q~vl~SAT~~~~~~~l~~~~~~~~~~i~ 605 (930)
|||++++.||...+..|++.++. .+|+++||||+++.+.++++.++++|+.|.
T Consensus 159 Ead~lld~~f~~~v~~I~~~~~~---~~Q~vl~SAT~~~~v~~l~~~~l~~Pv~i~ 211 (212)
T d1qdea_ 159 EADEMLSSGFKEQIYQIFTLLPP---TTQVVLLSATMPNDVLEVTTKFMRNPVRIL 211 (212)
T ss_dssp THHHHHHTTCHHHHHHHHHHSCT---TCEEEEEESSCCHHHHHHHHHHCSSCEEEC
T ss_pred hhhhhcccchHHHHHHHHHhCCC---CCeEEEEEeeCCHHHHHHHHHHCCCCEEEe
Confidence 99999999999999999888764 789999999999999999999999998875
|
| >d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative DEAD box RNA helicase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=2.6e-35 Score=296.36 Aligned_cols=202 Identities=30% Similarity=0.498 Sum_probs=178.4
Q ss_pred CCCCCCCCCCHHHHHHHHhcCCCCCCCHHHHHhHHhhhcCC-cEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCee
Q psy15524 390 TSYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGG-DVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIY 468 (930)
Q Consensus 390 ~~f~~l~~l~~~~~~~l~~~~~~~~~~~iQ~~~i~~il~~~-d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~ 468 (930)
.+|+++ +|++.++++|.+ +||.+|||+|.++||.+++|+ |++++||||||||++|++|+++.... ..+++
T Consensus 4 msf~~l-~l~~~l~~~l~~-~g~~~pt~iQ~~~ip~~l~g~~d~iv~a~TGsGKT~~~~l~~~~~~~~-------~~~~~ 74 (208)
T d1hv8a1 4 MNFNEL-NLSDNILNAIRN-KGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNE-------NNGIE 74 (208)
T ss_dssp CCGGGS-SCCHHHHHHHHH-HTCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCS-------SSSCC
T ss_pred cCHHHc-CCCHHHHHHHHH-CCCCCCCHHHHHHHHHHHcCCCCeeeechhcccccceeeccccccccc-------ccCcc
Confidence 589999 999999999985 899999999999999999885 99999999999999999999986543 56889
Q ss_pred EEEEccCHHHHHHHHHHHHHhhccCCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhccCCcccccceEEEE
Q psy15524 469 AVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVL 548 (930)
Q Consensus 469 ~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVl 548 (930)
++|++||++||.|+++.+..+..... ..+....|+.....+...+ ++++|+|+|||++.+++.+ +.+.+++++++|+
T Consensus 75 ~lil~pt~~l~~q~~~~~~~~~~~~~-~~v~~~~g~~~~~~~~~~l-~~~~IlV~TP~~l~~~l~~-~~~~~~~l~~lVi 151 (208)
T d1hv8a1 75 AIILTPTRELAIQVADEIESLKGNKN-LKIAKIYGGKAIYPQIKAL-KNANIVVGTPGRILDHINR-GTLNLKNVKYFIL 151 (208)
T ss_dssp EEEECSCHHHHHHHHHHHHHHHCSSC-CCEEEECTTSCHHHHHHHH-HTCSEEEECHHHHHHHHHT-TCSCTTSCCEEEE
T ss_pred eEEEeeccccchhhhhhhhhhcccCC-eEEEEeeCCCChHHHHHhc-CCCCEEEEChHHHHHHHHc-CCCCcccCcEEEE
Confidence 99999999999999999999987655 3456677887766665554 5799999999999999876 5677999999999
Q ss_pred ecchhhhhcCcHHHHHHHHHHHhhcCccceEEEEccccCHHHHHHHhhhcCCCEEEEc
Q psy15524 549 DEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDA 606 (930)
Q Consensus 549 DEah~l~~~g~~~~l~~i~~~l~~~~~~~q~vl~SAT~~~~~~~l~~~~~~~~~~i~~ 606 (930)
||||++++.++...+..|++.++ +++|++++|||+++.+.++++.+++||..|.+
T Consensus 152 DEad~l~~~~~~~~i~~I~~~~~---~~~Q~i~~SAT~~~~v~~~~~~~l~~~~~I~~ 206 (208)
T d1hv8a1 152 DEADEMLNMGFIKDVEKILNACN---KDKRILLFSATMPREILNLAKKYMGDYSFIKA 206 (208)
T ss_dssp ETHHHHHTTTTHHHHHHHHHTSC---SSCEEEEECSSCCHHHHHHHHHHCCSEEEEEC
T ss_pred EChHHhhcCCChHHHHHHHHhCC---CCCeEEEEEccCCHHHHHHHHHHCCCCeEEEE
Confidence 99999999999999998887765 47899999999999999999999999988875
|
| >d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative ATP-dependent RNA helicase DHH1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=4e-35 Score=295.00 Aligned_cols=204 Identities=31% Similarity=0.529 Sum_probs=184.9
Q ss_pred CCCCCCCCCHHHHHHHHhcCCCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEE
Q psy15524 391 SYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAV 470 (930)
Q Consensus 391 ~f~~l~~l~~~~~~~l~~~~~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~l 470 (930)
+|++| +|++.++++|.+ +||.+|||+|+++||.+++|+|+++.||||||||++|++|+++.+.. ...+.+++
T Consensus 2 sF~~l-~L~~~l~~~L~~-~g~~~pt~iQ~~aip~il~g~dvi~~a~tGsGKTlay~lp~i~~~~~------~~~~~~~~ 73 (206)
T d1s2ma1 2 TFEDF-YLKRELLMGIFE-AGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKP------KLNKIQAL 73 (206)
T ss_dssp CGGGG-CCCHHHHHHHHH-TTCCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHCCT------TSCSCCEE
T ss_pred ChHHc-CCCHHHHHHHHH-CCCCCCCHHHHHHHHHHHcCCCEEEecCCcchhhhhhcccccccccc------ccccccce
Confidence 79999 999999999985 89999999999999999999999999999999999999999988754 34577899
Q ss_pred EEccCHHHHHHHHHHHHHhhccCCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhccCCcccccceEEEEec
Q psy15524 471 IILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDE 550 (930)
Q Consensus 471 il~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlDE 550 (930)
+++|+++++.|....+..+... ..+.+...+|+.........+..+++|+|+|||+|.+++.. ..+.+++++++|+||
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~l~~~~~Ili~TP~~l~~~l~~-~~~~l~~l~~lV~DE 151 (206)
T d1s2ma1 74 IMVPTRELALQTSQVVRTLGKH-CGISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASR-KVADLSDCSLFIMDE 151 (206)
T ss_dssp EECSSHHHHHHHHHHHHHHTTT-TTCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHT-TCSCCTTCCEEEEES
T ss_pred eeccchhhhhhhhhhhhhcccc-cCeeEEeecCccchhhHHHHhcccceEEEECCccccccccc-ceeecccceEEEeec
Confidence 9999999999999998887765 44677888899888888888889999999999999999986 567899999999999
Q ss_pred chhhhhcCcHHHHHHHHHHHhhcCccceEEEEccccCHHHHHHHhhhcCCCEEEEcc
Q psy15524 551 ADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAA 607 (930)
Q Consensus 551 ah~l~~~g~~~~l~~i~~~l~~~~~~~q~vl~SAT~~~~~~~l~~~~~~~~~~i~~~ 607 (930)
||+|++.||...+..|++.+++ .+|+++||||+|+.+.++++.++.+|..|.+.
T Consensus 152 aD~l~~~~f~~~v~~I~~~l~~---~~Q~il~SATl~~~v~~~~~~~l~~P~~I~~~ 205 (206)
T d1s2ma1 152 ADKMLSRDFKTIIEQILSFLPP---THQSLLFSATFPLTVKEFMVKHLHKPYEINLM 205 (206)
T ss_dssp HHHHSSHHHHHHHHHHHTTSCS---SCEEEEEESCCCHHHHHHHHHHCSSCEEESCC
T ss_pred hhhhhhhhhHHHHHHHHHhCCC---CCEEEEEEEeCCHHHHHHHHHHCCCCEEEEee
Confidence 9999999999999999887764 78999999999999999999999999988753
|
| >d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Probable ATP-dependent RNA helicase DDX48 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=8.4e-34 Score=286.09 Aligned_cols=186 Identities=30% Similarity=0.498 Sum_probs=165.6
Q ss_pred CCCccCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHH
Q psy15524 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKL 80 (930)
Q Consensus 1 ~g~~~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~ 80 (930)
+||+.|||+|++|||.+++|+|++++||||||||++|++|+++.+.. ....+++++++||+||+.|+++.++++
T Consensus 35 ~g~~~pt~IQ~~aIp~il~g~dvi~~a~TGSGKTlayllPil~~l~~------~~~~~~~lil~PtreLa~Qi~~~~~~l 108 (222)
T d2j0sa1 35 YGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDI------QVRETQALILAPTRELAVQIQKGLLAL 108 (222)
T ss_dssp HTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHTCCT------TSCSCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHCCCCeEEEcCcchhhhhhhcccccccccc------cccCceeEEecchHHHHHHHHHHHHHH
Confidence 48999999999999999999999999999999999999999998854 234677999999999999999999999
Q ss_pred hhhcCCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCcHHHHHHHHHH
Q psy15524 81 CKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEI 160 (930)
Q Consensus 81 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~~~~~~~i~~~ 160 (930)
+.... +.+..++|+.....+...+..+++|+|+||+++.+++.. ..+.+++++++|+||||.|++.+|.+++..|++.
T Consensus 109 ~~~~~-i~~~~~~g~~~~~~~~~~l~~~~~Ilv~TPgrl~~~~~~-~~~~~~~l~~lVlDEaD~ll~~~f~~~i~~I~~~ 186 (222)
T d2j0sa1 109 GDYMN-VQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRR-RSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRY 186 (222)
T ss_dssp TTTTT-CCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHT-TSSCCTTCCEEEEETHHHHTSTTTHHHHHHHHTT
T ss_pred hCccc-eeEEEEeecccchhhHHHhccCCeEEeCCCCcHHhcccc-cccccccceeeeecchhHhhhcCcHHHHHHHHHh
Confidence 87654 788888999998888888888999999999999998876 6678999999999999999999999888877765
Q ss_pred HhhcCCCceEEEEEeecCCCccccccccccccccccchhhhhhhhhhhccchhhHHHHHHHHhhcCcCceEEEEecccch
Q psy15524 161 LKKQKPQFQSILLSATLTPATCWCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLTP 240 (930)
Q Consensus 161 l~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~de~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~sat~~~ 240 (930)
++. .+|+++||||++.
T Consensus 187 l~~----------------------------------------------------------------~~Q~ilfSAT~~~ 202 (222)
T d2j0sa1 187 LPP----------------------------------------------------------------ATQVVLISATLPH 202 (222)
T ss_dssp SCT----------------------------------------------------------------TCEEEEEESCCCH
T ss_pred CCC----------------------------------------------------------------CCEEEEEEEeCCH
Confidence 532 2399999999999
Q ss_pred HHHHhhhccccCCeeecc
Q psy15524 241 AVQRLAGMTLQNPIQIDA 258 (930)
Q Consensus 241 ~~~~l~~~~l~~~~~i~~ 258 (930)
.++.+++.++++|+.|.+
T Consensus 203 ~v~~l~~~~l~~Pv~I~V 220 (222)
T d2j0sa1 203 EILEMTNKFMTDPIRILV 220 (222)
T ss_dssp HHHTTGGGTCSSCEEECC
T ss_pred HHHHHHHHHCCCCEEEEE
Confidence 999999999999988765
|
| >d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEAD box RNA helicase rck/p54 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=3.6e-33 Score=279.71 Aligned_cols=185 Identities=36% Similarity=0.568 Sum_probs=165.5
Q ss_pred CCCccCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHH
Q psy15524 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKL 80 (930)
Q Consensus 1 ~g~~~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~ 80 (930)
+||++|||+|++|||.+++|+|++++||||||||++|++|+++++.. ..+++++|+++||++|+.|+++.+..+
T Consensus 21 ~g~~~pt~iQ~~aip~il~g~dvl~~a~TGsGKTlayllP~l~~~~~------~~~~~~~lil~pt~el~~q~~~~~~~~ 94 (206)
T d1veca_ 21 MGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDL------KKDNIQAMVIVPTRELALQVSQICIQV 94 (206)
T ss_dssp TTCCSCCHHHHHHHHHHHTTCCEEEECCSSSTTHHHHHHHHHHHCCT------TSCSCCEEEECSCHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHcCCCEEeeccCccccccccccchhhcccc------cccCcceEEEeecchhhHHHHHHHHHH
Confidence 69999999999999999999999999999999999999999998754 234678999999999999999999999
Q ss_pred hhhcCCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCcHHHHHHHHHH
Q psy15524 81 CKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEI 160 (930)
Q Consensus 81 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~~~~~~~i~~~ 160 (930)
.............|+.....+...+..+++|+|+||+++.+++.. +.+.+++++++|+||||.|++.+|.+++..|++.
T Consensus 95 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~ivv~TPgrl~~~~~~-~~~~~~~l~~lVlDEaD~ll~~~f~~~i~~I~~~ 173 (206)
T d1veca_ 95 SKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKK-GVAKVDHVQMIVLDEADKLLSQDFVQIMEDIILT 173 (206)
T ss_dssp TTTSSSCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHT-TCSCCTTCCEEEEETHHHHTSTTTHHHHHHHHHH
T ss_pred hhcccCcccccccCCccHHHHHHHHHhccCeEEeCCccccccccc-hhccccccceEEEeccccccccchHHHHHHHHHh
Confidence 877766777888888888888888889999999999999999876 6678899999999999999999999998888776
Q ss_pred HhhcCCCceEEEEEeecCCCccccccccccccccccchhhhhhhhhhhccchhhHHHHHHHHhhcCcCceEEEEecccch
Q psy15524 161 LKKQKPQFQSILLSATLTPATCWCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLTP 240 (930)
Q Consensus 161 l~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~de~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~sat~~~ 240 (930)
++.. +|+++||||+++
T Consensus 174 ~~~~----------------------------------------------------------------~Q~~l~SAT~~~ 189 (206)
T d1veca_ 174 LPKN----------------------------------------------------------------RQILLYSATFPL 189 (206)
T ss_dssp SCTT----------------------------------------------------------------CEEEEEESCCCH
T ss_pred CCCC----------------------------------------------------------------CEEEEEEecCCH
Confidence 6432 399999999999
Q ss_pred HHHHhhhccccCCeee
Q psy15524 241 AVQRLAGMTLQNPIQI 256 (930)
Q Consensus 241 ~~~~l~~~~l~~~~~i 256 (930)
.++.+++.++++|+.|
T Consensus 190 ~v~~l~~~~l~~P~~I 205 (206)
T d1veca_ 190 SVQKFMNSHLEKPYEI 205 (206)
T ss_dssp HHHHHHHHHCSSCEEE
T ss_pred HHHHHHHHHCCCCEEE
Confidence 9999999999999876
|
| >d1q0ua_ c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Probable DEAD box RNA helicase YqfR species: Bacillus stearothermophilus [TaxId: 1422]
Probab=100.00 E-value=1.6e-33 Score=284.97 Aligned_cols=205 Identities=30% Similarity=0.496 Sum_probs=176.4
Q ss_pred CCCCCCCCCCHHHHHHHHhcCCCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeE
Q psy15524 390 TSYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYA 469 (930)
Q Consensus 390 ~~f~~l~~l~~~~~~~l~~~~~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~ 469 (930)
++|+++ +|++.++++|.+ +||++|||+|++|||.+++|+|++++||||||||+||++|+++.+.. .......
T Consensus 1 t~F~~l-~L~~~l~~~l~~-~g~~~pt~iQ~~aip~~l~G~dvii~a~TGSGKTlayllp~l~~~~~------~~~~~~~ 72 (209)
T d1q0ua_ 1 TQFTRF-PFQPFIIEAIKT-LRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKIKP------ERAEVQA 72 (209)
T ss_dssp CCGGGS-CCCHHHHHHHHH-TTCCSCCHHHHHHHHHHHHTCCEEEECCSSHHHHHHHHHHHHHHCCT------TSCSCCE
T ss_pred CccccC-CcCHHHHHHHHH-CCCCCCCHHHHHHHHHHHCCCCeEeecccccccceeeeeeecccccc------ccccccc
Confidence 369999 999999999985 89999999999999999999999999999999999999999988764 2456778
Q ss_pred EEEccCHHHHHHHHHHHHHhhccCC---CcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhccCCcccccceEE
Q psy15524 470 VIILPTRELALQTLEIFTKLCKSFT---WIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHL 546 (930)
Q Consensus 470 lil~PtreLa~Q~~~~~~~~~~~~~---~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~l 546 (930)
++++|+++++.+.+..+........ ......+.|+.+...+......+++|+|+||+++.+++.+ ....+++++++
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~TP~~l~~~~~~-~~~~~~~l~~l 151 (209)
T d1q0ua_ 73 VITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIRE-QALDVHTAHIL 151 (209)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTCCCSSCCSEEEECHHHHHHHHHT-TCCCGGGCCEE
T ss_pred cccccccchhHHHHHHHHhhhccccccccccccccccchhhHHHHHHhccCceEEEecCchhhhhhhh-hccccccceEE
Confidence 9999999999999988877655432 2334555666655555555667899999999999998876 45568999999
Q ss_pred EEecchhhhhcCcHHHHHHHHHHHhhcCccceEEEEccccCHHHHHHHhhhcCCCEEEEc
Q psy15524 547 VLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDA 606 (930)
Q Consensus 547 VlDEah~l~~~g~~~~l~~i~~~l~~~~~~~q~vl~SAT~~~~~~~l~~~~~~~~~~i~~ 606 (930)
|+||||++++++|...+..|+..+++ ++|++++|||+|+++.++++.++++|..|.+
T Consensus 152 ViDEad~ll~~~f~~~v~~I~~~~~~---~~Q~il~SATl~~~v~~l~~~~l~~p~~i~V 208 (209)
T d1q0ua_ 152 VVDEADLMLDMGFITDVDQIAARMPK---DLQMLVFSATIPEKLKPFLKKYMENPTFVHV 208 (209)
T ss_dssp EECSHHHHHHTTCHHHHHHHHHTSCT---TCEEEEEESCCCGGGHHHHHHHCSSCEEEEC
T ss_pred EEeecccccccccHHHHHHHHHHCCC---CCEEEEEEccCCHHHHHHHHHHCCCCEEEEe
Confidence 99999999999999999999877754 8899999999999999999999999998865
|
| >d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Spliceosome RNA helicase BAT1 (UAP56) species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.8e-32 Score=274.78 Aligned_cols=186 Identities=26% Similarity=0.481 Sum_probs=160.0
Q ss_pred CCCccCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHH
Q psy15524 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKL 80 (930)
Q Consensus 1 ~g~~~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~ 80 (930)
+||+.|||+|++|||.+++|+|++++||||||||++|++|+++.+.. ...++++++++||++|+.|+.+.++.+
T Consensus 19 ~g~~~pt~iQ~~aip~il~g~dvl~~A~TGsGKTla~~lp~l~~~~~------~~~~~~~lil~PtreL~~qi~~~~~~~ 92 (207)
T d1t6na_ 19 CGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEP------VTGQVSVLVMCHTRELAFQISKEYERF 92 (207)
T ss_dssp TTCCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCC------CTTCCCEEEECSCHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHcCCCeEEEeccccccccccccceeeeecc------cCCCceEEEEeccchhhHHHHHHHHHH
Confidence 69999999999999999999999999999999999999999998754 234677999999999999999999999
Q ss_pred hhhcCCceeEEeeCCCchHHHHHHh-cCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEccccccccc-CcHHHHHHHH
Q psy15524 81 CKSFTWIVPSWLTGGEKMKSEKARI-RKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQ-GYERDIAEFL 158 (930)
Q Consensus 81 ~~~~~~~~~~~~~g~~~~~~~~~~l-~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~-~~~~~~~~i~ 158 (930)
+............|+.....+...+ ..+++|+|+||+++.+++.. +.+.+++++++|+||||.|++. +|..++..|+
T Consensus 93 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~ilI~TP~rl~~~~~~-~~~~l~~l~~lVlDEaD~ll~~~~~~~~i~~I~ 171 (207)
T d1t6na_ 93 SKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARN-KSLNLKHIKHFILDECDKMLEQLDMRRDVQEIF 171 (207)
T ss_dssp TTTSTTCCEEEESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHT-TSSCCTTCCEEEEESHHHHHSSHHHHHHHHHHH
T ss_pred HhhCCCceeEEEeccccHHHHHHHHHhcCCCEEEeCcchhhhhccC-CceeccccceeehhhhhhhhhcCCcHHHHHHHH
Confidence 9887777788888888877776665 46799999999999999876 6678999999999999999974 7877776666
Q ss_pred HHHhhcCCCceEEEEEeecCCCccccccccccccccccchhhhhhhhhhhccchhhHHHHHHHHhhcCcCceEEEEeccc
Q psy15524 159 EILKKQKPQFQSILLSATLTPATCWCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATL 238 (930)
Q Consensus 159 ~~l~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~de~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~sat~ 238 (930)
+.++ +.+|+++||||+
T Consensus 172 ~~~~----------------------------------------------------------------~~~Q~il~SAT~ 187 (207)
T d1t6na_ 172 RMTP----------------------------------------------------------------HEKQVMMFSATL 187 (207)
T ss_dssp HTSC----------------------------------------------------------------SSSEEEEEESCC
T ss_pred HhCC----------------------------------------------------------------CCCEEEEEeeeC
Confidence 5442 223888888888
Q ss_pred chHHHHhhhccccCCeeec
Q psy15524 239 TPAVQRLAGMTLQNPIQID 257 (930)
Q Consensus 239 ~~~~~~l~~~~l~~~~~i~ 257 (930)
++.++.+++.++++|+.|.
T Consensus 188 ~~~v~~l~~~~l~~P~~I~ 206 (207)
T d1t6na_ 188 SKEIRPVCRKFMQDPMEIF 206 (207)
T ss_dssp CTTTHHHHHTTCSSCEEEE
T ss_pred CHHHHHHHHHHCCCCEEEe
Confidence 8888899999999998764
|
| >d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: Dengue virus helicase species: Dengue virus type 2 [TaxId: 11060]
Probab=99.98 E-value=2.8e-32 Score=294.05 Aligned_cols=275 Identities=14% Similarity=0.161 Sum_probs=188.5
Q ss_pred hhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHHHHhhccCCCcceEEEeCCC
Q psy15524 426 ILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGE 505 (930)
Q Consensus 426 il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~ 505 (930)
+.+++++++.||||||||++|++|++..... .+.++||++||++||.|+++.++.+........ .
T Consensus 6 ~~~~~~~lv~~~TGsGKT~~~l~~~~~~~~~--------~~~~~lvi~Ptr~La~q~~~~l~~~~~~~~~~~----~--- 70 (305)
T d2bmfa2 6 FRKKRLTIMDLHPGAGKTKRYLPAIVREAIK--------RGLRTLILAPTRVVAAEMEEALRGLPIRYQTPA----I--- 70 (305)
T ss_dssp SSTTCEEEECCCTTSSTTTTHHHHHHHHHHH--------HTCCEEEEESSHHHHHHHHHHTTTSCCBCCC----------
T ss_pred hhcCCcEEEEECCCCCHHHHHHHHHHHHHHh--------cCCEEEEEccHHHHHHHHHHHHhcCCcceeeeE----E---
Confidence 4578999999999999999998898876654 256799999999999999988876543221110 0
Q ss_pred chHHHHHHHhcCCcEEEECchhHHHhhhccCCcccccceEEEEecchhhhhcCcHHHHHHHHHHHhhcCccceEEEEccc
Q psy15524 506 KMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSAT 585 (930)
Q Consensus 506 ~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~l~~~g~~~~l~~i~~~l~~~~~~~q~vl~SAT 585 (930)
.........|+++||+.+..+... ...+.+++++|+||||++.++++. ...++..+.. .++.+++++|||
T Consensus 71 -----~~~~~~~~~i~~~t~~~l~~~~~~--~~~~~~~~~vViDE~H~~~~~~~~--~~~~l~~~~~-~~~~~~v~~SAT 140 (305)
T d2bmfa2 71 -----RAEHTGREIVDLMCHATFTMRLLS--PIRVPNYNLIIMDEAHFTDPASIA--ARGYISTRVE-MGEAAGIFMTAT 140 (305)
T ss_dssp ----------CCCSEEEEEHHHHHHHHTS--SSCCCCCSEEEEESTTCCSHHHHH--HHHHHHHHHH-HTSCEEEEECSS
T ss_pred -----eecccCccccccCCcHHHHHHHhc--CccccceeEEEeeeeeecchhhHH--HHHHHHHhhc-cccceEEEeecC
Confidence 111234568999999998777654 344688999999999999776542 1222333322 247899999999
Q ss_pred cCHHHHHHHhhhcCCCEEEEccCCCCcccCccceecCCCceEEEEEcCchhhHHHHHHHHHhhccCCCcCCCceEEEEec
Q psy15524 586 LTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMA 665 (930)
Q Consensus 586 ~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~ 665 (930)
++...... ...+... .......+...+...+ ..+.. ..++++|||+
T Consensus 141 ~~~~~~~~---~~~~~~~----------------------~~~~~~~~~~~~~~~~-~~~~~--------~~~~~lvf~~ 186 (305)
T d2bmfa2 141 PPGSRDPF---PQSNAPI----------------------MDEEREIPERSWNSGH-EWVTD--------FKGKTVWFVP 186 (305)
T ss_dssp CTTCCCSS---CCCSSCE----------------------EEEECCCCCSCCSSCC-HHHHS--------SCSCEEEECS
T ss_pred CCcceeee---cccCCcc----------------------eEEEEeccHHHHHHHH-HHHHh--------hCCCEEEEec
Confidence 87522110 0000000 0000001111111111 11111 2678999999
Q ss_pred chhhHHHHHHHHhhhcCCCceEEEecCCCCHHHHHHHHHHhhcCCCcEEEeccccccccCCCCccEEE----------Ee
Q psy15524 666 TQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIV----------QY 735 (930)
Q Consensus 666 s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~v~~~F~~~~~~vLv~T~~~~~GlDip~v~~VI----------~~ 735 (930)
+++.++.+++.|.+. +..+..+||++.+..| ..|++|..+++|||+++++|+|++ ++.|| ++
T Consensus 187 ~~~~~~~l~~~L~~~---~~~~~~l~~~~~~~~~----~~~~~~~~~~lvaT~~~~~G~~~~-~~~Vi~~~~~~~~~~~~ 258 (305)
T d2bmfa2 187 SIKAGNDIAACLRKN---GKKVIQLSRKTFDSEY----IKTRTNDWDFVVTTDISEMGANFK-AERVIDPRRCMKPVILT 258 (305)
T ss_dssp CHHHHHHHHHHHHHH---TCCCEECCTTCHHHHG----GGGGTSCCSEEEECGGGGTTCCCC-CSEEEECCEEEEEEEEC
T ss_pred cHHHHHHHHHHHHhC---CCCEEEeCCcChHHHH----hhhhccchhhhhhhHHHHhcCCCC-ccEEEEcCCceeeeEec
Confidence 999999999999886 6778889999866544 468899999999999999999995 44444 33
Q ss_pred c----------CCCChhhHHhhhcccccCCCCceEEEEeCcc
Q psy15524 736 T----------APSSSTDYVHRVGRTARVGHEGSSLLFLIPS 767 (930)
Q Consensus 736 ~----------~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~ 767 (930)
| .|.|..+|+||+||+||.|+.|.+.+++...
T Consensus 259 ~~~~~~~~~~~~~~s~~~~~Qr~GR~GR~~~~~~~~~~~~~~ 300 (305)
T d2bmfa2 259 DGEERVILAGPMPVTHSSAAQRRGRVGRNPKNENDQYIYMGE 300 (305)
T ss_dssp SSSCEEEEEEEEECCHHHHHHHHTTSSCSSSCCCEEEEECSC
T ss_pred CCCCceEEeccccCCHHHHhhhhcCcCcCCCCceEEEEECCC
Confidence 3 4568899999999999999988888776643
|
| >d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Initiation factor 4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=5.7e-32 Score=272.70 Aligned_cols=186 Identities=31% Similarity=0.473 Sum_probs=156.6
Q ss_pred CCCccCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHH
Q psy15524 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKL 80 (930)
Q Consensus 1 ~g~~~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~ 80 (930)
+||+.|||+|++|||.++.|+|++++||||||||++|++|+++++.. ...++++||++||++|+.|+++.+..+
T Consensus 30 ~g~~~pt~iQ~~aip~il~g~dvl~~a~TGsGKTlayllp~l~~i~~------~~~~~~alil~Pt~eL~~Q~~~~~~~~ 103 (218)
T d2g9na1 30 YGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIEL------DLKATQALVLAPTRELAQQIQKVVMAL 103 (218)
T ss_dssp HTCCSCCHHHHHHHHHHHHTCCEEEECCTTSSHHHHHHHHHHHHCCT------TCCSCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHcCCCEEEEcccchhhhhhhhhhhhheecc------cccCccEEEEcccchhhhhHHHHHhhh
Confidence 48999999999999999999999999999999999999999999854 235678999999999999999999999
Q ss_pred hhhcCCceeEEeeCCCchHHHH-HHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCcHHHHHHHHH
Q psy15524 81 CKSFTWIVPSWLTGGEKMKSEK-ARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLE 159 (930)
Q Consensus 81 ~~~~~~~~~~~~~g~~~~~~~~-~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~~~~~~~i~~ 159 (930)
..... .....+.++....... ......++|+|+||+++.+++.+ +...+++++++|+||||.|++.+|..++..+++
T Consensus 104 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~IvV~TP~rl~~~l~~-~~~~~~~l~~lVlDEaD~ll~~~f~~~~~~Il~ 181 (218)
T d2g9na1 104 GDYMG-ASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNR-RYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQ 181 (218)
T ss_dssp HTTTT-CCEEEECC--CCCSTTTSSSSCCCSEEEECHHHHHHHHHT-TSSCSTTCCEEEEESHHHHHHTTCHHHHHHHHH
T ss_pred ccccc-eeEEeeecccchhHHHHHHhcCCCEEEEeCChhHHHHHhc-CCcccccceEEEeeecchhhcCchHHHHHHHHH
Confidence 88766 4445555554444333 33445689999999999999976 667789999999999999999999988888776
Q ss_pred HHhhcCCCceEEEEEeecCCCccccccccccccccccchhhhhhhhhhhccchhhHHHHHHHHhhcCcCceEEEEecccc
Q psy15524 160 ILKKQKPQFQSILLSATLTPATCWCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLT 239 (930)
Q Consensus 160 ~l~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~de~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~sat~~ 239 (930)
.++.. +|+++||||++
T Consensus 182 ~~~~~----------------------------------------------------------------~Q~il~SAT~~ 197 (218)
T d2g9na1 182 KLNSN----------------------------------------------------------------TQVVLLSATMP 197 (218)
T ss_dssp HSCTT----------------------------------------------------------------CEEEEEESCCC
T ss_pred hCCCC----------------------------------------------------------------CeEEEEEecCC
Confidence 65322 39999999999
Q ss_pred hHHHHhhhccccCCeeecc
Q psy15524 240 PAVQRLAGMTLQNPIQIDA 258 (930)
Q Consensus 240 ~~~~~l~~~~l~~~~~i~~ 258 (930)
+.++.+++.++++|+.|.+
T Consensus 198 ~~v~~~~~~~l~~pv~i~v 216 (218)
T d2g9na1 198 SDVLEVTKKFMRDPIRILV 216 (218)
T ss_dssp HHHHHHHHHHCSSCEEEEC
T ss_pred HHHHHHHHHHCCCCEEEEE
Confidence 9999999999999988765
|
| >d1wrba1 c.37.1.19 (A:164-401) putative ATP-dependent RNA helicase VlgB {Flatworm (Dugesia japonica) [TaxId: 6161]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase VlgB species: Flatworm (Dugesia japonica) [TaxId: 6161]
Probab=99.97 E-value=2.6e-31 Score=271.92 Aligned_cols=196 Identities=34% Similarity=0.467 Sum_probs=168.1
Q ss_pred CCCccCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCc---CCCCCCeEEEEEcccHHHHHHHHHHH
Q psy15524 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPK---ISRKDGIYAVIILPTRELALQTLEIF 77 (930)
Q Consensus 1 ~g~~~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~---~~~~~~~~~lvl~P~~~L~~q~~~~~ 77 (930)
+||+.|||+|++|||.+++|+|++++||||||||++|++|+++++...... .....++++||++||++|+.|+.+.+
T Consensus 39 ~g~~~pt~iQ~~~ip~il~g~dvvi~a~TGsGKTlayllp~l~~l~~~~~~~~~~~~~~~~~alil~pt~el~~q~~~~~ 118 (238)
T d1wrba1 39 ASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAYPKCLILAPTRELAIQILSES 118 (238)
T ss_dssp TTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCBCCSEEEECSSHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHhhhhhCCCCEEEECCCCCCcceeeHHHHHHHHHhcccccccccCCCCceEEEeccchhhhcchheee
Confidence 599999999999999999999999999999999999999999999764321 12345788999999999999999999
Q ss_pred HHHhhhcCCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCcHHHHHHH
Q psy15524 78 TKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEF 157 (930)
Q Consensus 78 ~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~~~~~~~i 157 (930)
..++...+ +++..+.|+.....+......++||+||||++|.+++.. +...+.+++++||||||.+++.+|.+++..+
T Consensus 119 ~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~ivV~TP~~l~~~~~~-~~~~l~~v~~lViDEaD~ll~~~f~~~i~~I 196 (238)
T d1wrba1 119 QKFSLNTP-LRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEK-NKISLEFCKYIVLDEADRMLDMGFEPQIRKI 196 (238)
T ss_dssp HHHHTTSS-CCEEEECSSSCSHHHHHHHSSCCSEEEECHHHHHHHHHT-TSBCCTTCCEEEEETHHHHHHTTCHHHHHHH
T ss_pred eecccCCC-cEEEEEeccchhhHHHhhcccCCceeecCHHHHHhHHcc-CceeccccceeeeehhhhhhhhccHHHHHHH
Confidence 99987665 777888888888888888888999999999999999876 6677999999999999999999999999888
Q ss_pred HHHHhhcCCCceEEEEEeecCCCccccccccccccccccchhhhhhhhhhhccchhhHHHHHHHHhhcCcCceEEEEecc
Q psy15524 158 LEILKKQKPQFQSILLSATLTPATCWCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSAT 237 (930)
Q Consensus 158 ~~~l~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~de~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~sat 237 (930)
++.+.... ...+|+++||||
T Consensus 197 l~~~~~~~------------------------------------------------------------~~~~Q~il~SAT 216 (238)
T d1wrba1 197 IEESNMPS------------------------------------------------------------GINRQTLMFSAT 216 (238)
T ss_dssp HHSSCCCC------------------------------------------------------------GGGCEEEEEESS
T ss_pred HHHhcCCC------------------------------------------------------------CCCCEEEEEeee
Confidence 76543211 112499999999
Q ss_pred cchHHHHhhhccccCCeeecc
Q psy15524 238 LTPAVQRLAGMTLQNPIQIDA 258 (930)
Q Consensus 238 ~~~~~~~l~~~~l~~~~~i~~ 258 (930)
++..++.+++.++++|+.|.+
T Consensus 217 ~~~~v~~l~~~~~~~p~~i~v 237 (238)
T d1wrba1 217 FPKEIQKLAADFLYNYIFMTV 237 (238)
T ss_dssp CCHHHHHHHHHHCSSCEEEEE
T ss_pred CCHHHHHHHHHHCCCCEEEEe
Confidence 999999999999999977643
|
| >d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Initiation factor 4a species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=3.9e-31 Score=265.56 Aligned_cols=184 Identities=31% Similarity=0.535 Sum_probs=152.1
Q ss_pred CCCccCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHH
Q psy15524 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKL 80 (930)
Q Consensus 1 ~g~~~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~ 80 (930)
+||++|||+|++|||.++.|+|++++||||||||++|++|+++++.. ...++++++++||++|+.|....+..+
T Consensus 28 ~g~~~pt~iQ~~aip~il~g~dvl~~a~TGsGKT~a~~lp~i~~l~~------~~~~~~~lil~pt~el~~q~~~~~~~~ 101 (212)
T d1qdea_ 28 YGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDT------SVKAPQALMLAPTRELALQIQKVVMAL 101 (212)
T ss_dssp HTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCT------TCCSCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHcCCCEEeecccccchhhhhHhhhHhhhhc------cCCCcceEEEcccHHHhhhhhhhhccc
Confidence 59999999999999999999999999999999999999999999854 335778999999999999999999888
Q ss_pred hhhcCCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCcHHHHHHHHHH
Q psy15524 81 CKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEI 160 (930)
Q Consensus 81 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~~~~~~~i~~~ 160 (930)
..... .......++.....+...+ ++++|+|+||+++.+++.. +.+.+++++++|+||||.|++.+|+.++..+++.
T Consensus 102 ~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~IvI~TP~~l~~~~~~-~~~~l~~l~~lVlDEad~lld~~f~~~v~~I~~~ 178 (212)
T d1qdea_ 102 AFHMD-IKVHACIGGTSFVEDAEGL-RDAQIVVGTPGRVFDNIQR-RRFRTDKIKMFILDEADEMLSSGFKEQIYQIFTL 178 (212)
T ss_dssp TTTSC-CCEEEECC----------C-TTCSEEEECHHHHHHHHHT-TSSCCTTCCEEEEETHHHHHHTTCHHHHHHHHHH
T ss_pred ccccc-cceeeEeeccchhHHHHHh-cCCcEEEECCCcccccccc-CceecCcceEEeehhhhhhcccchHHHHHHHHHh
Confidence 76544 5556666666655555544 4689999999999999876 6678999999999999999999999988887766
Q ss_pred HhhcCCCceEEEEEeecCCCccccccccccccccccchhhhhhhhhhhccchhhHHHHHHHHhhcCcCceEEEEecccch
Q psy15524 161 LKKQKPQFQSILLSATLTPATCWCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLTP 240 (930)
Q Consensus 161 l~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~de~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~sat~~~ 240 (930)
++.. +|+++||||+++
T Consensus 179 ~~~~----------------------------------------------------------------~Q~vl~SAT~~~ 194 (212)
T d1qdea_ 179 LPPT----------------------------------------------------------------TQVVLLSATMPN 194 (212)
T ss_dssp SCTT----------------------------------------------------------------CEEEEEESSCCH
T ss_pred CCCC----------------------------------------------------------------CeEEEEEeeCCH
Confidence 5322 399999999999
Q ss_pred HHHHhhhccccCCeeec
Q psy15524 241 AVQRLAGMTLQNPIQID 257 (930)
Q Consensus 241 ~~~~l~~~~l~~~~~i~ 257 (930)
.++.+++.++++|+.|.
T Consensus 195 ~v~~l~~~~l~~Pv~i~ 211 (212)
T d1qdea_ 195 DVLEVTTKFMRNPVRIL 211 (212)
T ss_dssp HHHHHHHHHCSSCEEEC
T ss_pred HHHHHHHHHCCCCEEEe
Confidence 99999999999998774
|
| >d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative DEAD box RNA helicase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.97 E-value=2.6e-30 Score=259.58 Aligned_cols=184 Identities=33% Similarity=0.523 Sum_probs=157.5
Q ss_pred CCCccCcHHHHHHHHHhhcCC-cEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHH
Q psy15524 1 MNITQVTTVQQLSIQPILDGG-DVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTK 79 (930)
Q Consensus 1 ~g~~~l~~~Q~~ai~~~~~g~-~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~ 79 (930)
+||++|||+|+++||.++.|+ |+++++|||+|||++|++|+++.... .+++++||++||++|+.|+++.+++
T Consensus 22 ~g~~~pt~iQ~~~ip~~l~g~~d~iv~a~TGsGKT~~~~l~~~~~~~~-------~~~~~~lil~pt~~l~~q~~~~~~~ 94 (208)
T d1hv8a1 22 KGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNE-------NNGIEAIILTPTRELAIQVADEIES 94 (208)
T ss_dssp HTCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCS-------SSSCCEEEECSCHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHcCCCCeeeechhcccccceeeccccccccc-------ccCcceEEEeeccccchhhhhhhhh
Confidence 489999999999999999885 99999999999999999999987543 4577899999999999999999999
Q ss_pred HhhhcCCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCcHHHHHHHHH
Q psy15524 80 LCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLE 159 (930)
Q Consensus 80 ~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~~~~~~~i~~ 159 (930)
+..... ..+....|+.....+...+ .++||+||||+++.+++.+ +.+.+++++++||||||++++.++..++..|++
T Consensus 95 ~~~~~~-~~v~~~~g~~~~~~~~~~l-~~~~IlV~TP~~l~~~l~~-~~~~~~~l~~lViDEad~l~~~~~~~~i~~I~~ 171 (208)
T d1hv8a1 95 LKGNKN-LKIAKIYGGKAIYPQIKAL-KNANIVVGTPGRILDHINR-GTLNLKNVKYFILDEADEMLNMGFIKDVEKILN 171 (208)
T ss_dssp HHCSSC-CCEEEECTTSCHHHHHHHH-HTCSEEEECHHHHHHHHHT-TCSCTTSCCEEEEETHHHHHTTTTHHHHHHHHH
T ss_pred hcccCC-eEEEEeeCCCChHHHHHhc-CCCCEEEEChHHHHHHHHc-CCCCcccCcEEEEEChHHhhcCCChHHHHHHHH
Confidence 987655 6677788888777766655 4699999999999999876 667899999999999999999999888877775
Q ss_pred HHhhcCCCceEEEEEeecCCCccccccccccccccccchhhhhhhhhhhccchhhHHHHHHHHhhcCcCceEEEEecccc
Q psy15524 160 ILKKQKPQFQSILLSATLTPATCWCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLT 239 (930)
Q Consensus 160 ~l~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~de~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~sat~~ 239 (930)
.++. ..|+++||||++
T Consensus 172 ~~~~----------------------------------------------------------------~~Q~i~~SAT~~ 187 (208)
T d1hv8a1 172 ACNK----------------------------------------------------------------DKRILLFSATMP 187 (208)
T ss_dssp TSCS----------------------------------------------------------------SCEEEEECSSCC
T ss_pred hCCC----------------------------------------------------------------CCeEEEEEccCC
Confidence 4432 238888888888
Q ss_pred hHHHHhhhccccCCeeecc
Q psy15524 240 PAVQRLAGMTLQNPIQIDA 258 (930)
Q Consensus 240 ~~~~~l~~~~l~~~~~i~~ 258 (930)
+.+..+++.++++|..|+.
T Consensus 188 ~~v~~~~~~~l~~~~~I~~ 206 (208)
T d1hv8a1 188 REILNLAKKYMGDYSFIKA 206 (208)
T ss_dssp HHHHHHHHHHCCSEEEEEC
T ss_pred HHHHHHHHHHCCCCeEEEE
Confidence 8888999999999887764
|
| >d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative ATP-dependent RNA helicase DHH1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=7.5e-30 Score=256.20 Aligned_cols=187 Identities=33% Similarity=0.549 Sum_probs=165.6
Q ss_pred CCCccCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHH
Q psy15524 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKL 80 (930)
Q Consensus 1 ~g~~~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~ 80 (930)
+||++|||+|++|||.+++|+|+++.||||||||++|++|+++.+.. ...+.++++++|+.+++.|....+...
T Consensus 19 ~g~~~pt~iQ~~aip~il~g~dvi~~a~tGsGKTlay~lp~i~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (206)
T d1s2ma1 19 AGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKP------KLNKIQALIMVPTRELALQTSQVVRTL 92 (206)
T ss_dssp TTCCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHCCT------TSCSCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHcCCCEEEecCCcchhhhhhcccccccccc------ccccccceeeccchhhhhhhhhhhhhc
Confidence 59999999999999999999999999999999999999999998754 234567999999999999999999888
Q ss_pred hhhcCCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCcHHHHHHHHHH
Q psy15524 81 CKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEI 160 (930)
Q Consensus 81 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~~~~~~~i~~~ 160 (930)
....+ +.+...+|+.........+..+++|+|+||+++.+++.. ..+.+.+++++|+||||.|++.+|++++..|++.
T Consensus 93 ~~~~~-~~~~~~~g~~~~~~~~~~l~~~~~Ili~TP~~l~~~l~~-~~~~l~~l~~lV~DEaD~l~~~~f~~~v~~I~~~ 170 (206)
T d1s2ma1 93 GKHCG-ISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASR-KVADLSDCSLFIMDEADKMLSRDFKTIIEQILSF 170 (206)
T ss_dssp TTTTT-CCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHT-TCSCCTTCCEEEEESHHHHSSHHHHHHHHHHHTT
T ss_pred ccccC-eeEEeecCccchhhHHHHhcccceEEEECCccccccccc-ceeecccceEEEeechhhhhhhhhHHHHHHHHHh
Confidence 77544 788889999998888888889999999999999999986 6678999999999999999999999988887765
Q ss_pred HhhcCCCceEEEEEeecCCCccccccccccccccccchhhhhhhhhhhccchhhHHHHHHHHhhcCcCceEEEEecccch
Q psy15524 161 LKKQKPQFQSILLSATLTPATCWCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLTP 240 (930)
Q Consensus 161 l~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~de~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~sat~~~ 240 (930)
++. .+|+++||||+++
T Consensus 171 l~~----------------------------------------------------------------~~Q~il~SATl~~ 186 (206)
T d1s2ma1 171 LPP----------------------------------------------------------------THQSLLFSATFPL 186 (206)
T ss_dssp SCS----------------------------------------------------------------SCEEEEEESCCCH
T ss_pred CCC----------------------------------------------------------------CCEEEEEEEeCCH
Confidence 532 2399999999999
Q ss_pred HHHHhhhccccCCeeeccC
Q psy15524 241 AVQRLAGMTLQNPIQIDAA 259 (930)
Q Consensus 241 ~~~~l~~~~l~~~~~i~~~ 259 (930)
.+..+++.++.+|..|.+.
T Consensus 187 ~v~~~~~~~l~~P~~I~~~ 205 (206)
T d1s2ma1 187 TVKEFMVKHLHKPYEINLM 205 (206)
T ss_dssp HHHHHHHHHCSSCEEESCC
T ss_pred HHHHHHHHHCCCCEEEEee
Confidence 9999999999999888653
|
| >d1q0ua_ c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Probable DEAD box RNA helicase YqfR species: Bacillus stearothermophilus [TaxId: 1422]
Probab=99.95 E-value=3.1e-28 Score=245.86 Aligned_cols=187 Identities=31% Similarity=0.475 Sum_probs=154.0
Q ss_pred CCCccCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHH
Q psy15524 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKL 80 (930)
Q Consensus 1 ~g~~~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~ 80 (930)
+||+.|||+|++|||.+++|+|++++||||||||++|++|+++.+... .....+++++|+.+++.+.+..+...
T Consensus 19 ~g~~~pt~iQ~~aip~~l~G~dvii~a~TGSGKTlayllp~l~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (209)
T d1q0ua_ 19 LRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKIKPE------RAEVQAVITAPTRELATQIYHETLKI 92 (209)
T ss_dssp TTCCSCCHHHHHHHHHHHHTCCEEEECCSSHHHHHHHHHHHHHHCCTT------SCSCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHCCCCeEeecccccccceeeeeeeccccccc------cccccccccccccchhHHHHHHHHhh
Confidence 589999999999999999999999999999999999999999987652 33556899999999999999988877
Q ss_pred hhhcC---CceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCcHHHHHHH
Q psy15524 81 CKSFT---WIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEF 157 (930)
Q Consensus 81 ~~~~~---~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~~~~~~~i 157 (930)
..... ........++.....+......+++|+|+||+++..++.+ ....+++++++|+||||.+++++|+.++..|
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~TP~~l~~~~~~-~~~~~~~l~~lViDEad~ll~~~f~~~v~~I 171 (209)
T d1q0ua_ 93 TKFCPKDRMIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIRE-QALDVHTAHILVVDEADLMLDMGFITDVDQI 171 (209)
T ss_dssp HTTSCGGGCCCEEEECCCSHHHHTTCCCSSCCSEEEECHHHHHHHHHT-TCCCGGGCCEEEECSHHHHHHTTCHHHHHHH
T ss_pred hccccccccccccccccchhhHHHHHHhccCceEEEecCchhhhhhhh-hccccccceEEEEeecccccccccHHHHHHH
Confidence 65433 2345556666665555555667899999999999998876 5567899999999999999999999988887
Q ss_pred HHHHhhcCCCceEEEEEeecCCCccccccccccccccccchhhhhhhhhhhccchhhHHHHHHHHhhcCcCceEEEEecc
Q psy15524 158 LEILKKQKPQFQSILLSATLTPATCWCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSAT 237 (930)
Q Consensus 158 ~~~l~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~de~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~sat 237 (930)
+..++. ..|+++||||
T Consensus 172 ~~~~~~----------------------------------------------------------------~~Q~il~SAT 187 (209)
T d1q0ua_ 172 AARMPK----------------------------------------------------------------DLQMLVFSAT 187 (209)
T ss_dssp HHTSCT----------------------------------------------------------------TCEEEEEESC
T ss_pred HHHCCC----------------------------------------------------------------CCEEEEEEcc
Confidence 765532 2378888888
Q ss_pred cchHHHHhhhccccCCeeecc
Q psy15524 238 LTPAVQRLAGMTLQNPIQIDA 258 (930)
Q Consensus 238 ~~~~~~~l~~~~l~~~~~i~~ 258 (930)
+++.+..+++.++++|..|.+
T Consensus 188 l~~~v~~l~~~~l~~p~~i~V 208 (209)
T d1q0ua_ 188 IPEKLKPFLKKYMENPTFVHV 208 (209)
T ss_dssp CCGGGHHHHHHHCSSCEEEEC
T ss_pred CCHHHHHHHHHHCCCCEEEEe
Confidence 888888888888888887753
|
| >d2j0sa2 c.37.1.19 (A:244-411) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Probable ATP-dependent RNA helicase DDX48 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.95 E-value=2.6e-27 Score=227.43 Aligned_cols=153 Identities=31% Similarity=0.578 Sum_probs=137.4
Q ss_pred CCCceEEEEEcCch-hhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHHHHH
Q psy15524 622 PDSLKQHFIVTPPK-LRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERT 700 (930)
Q Consensus 622 ~~~~~~~~~~~~~~-~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~ 700 (930)
.++++|.|+.++.+ .|+..|..++... ...++||||++++.++.+++.|... ++.+..+||++++.+|.
T Consensus 5 l~~i~q~~v~v~~~~~K~~~L~~ll~~~-------~~~k~iiF~~~~~~~~~~~~~l~~~---~~~~~~~~~~~~~~~r~ 74 (168)
T d2j0sa2 5 LEGIKQFFVAVEREEWKFDTLCDLYDTL-------TITQAVIFCNTKRKVDWLTEKMREA---NFTVSSMHGDMPQKERE 74 (168)
T ss_dssp CTTEEEEEEEESSTTHHHHHHHHHHHHH-------TSSEEEEECSSHHHHHHHHHHHHHT---TCCCEEECTTSCHHHHH
T ss_pred CCCcEEEEEEecChHHHHHHHHHHHHhC-------CCCceEEEeeeHHHHHHHHHHhhhc---ccchhhhhhhhhHHHHH
Confidence 36789999988775 5889988888653 1579999999999999999999875 77888999999999999
Q ss_pred HHHHHhhcCCCcEEEeccccccccCCCCccEEEEecCCCChhhHHhhhcccccCCCCceEEEEeCcccHHHHHHHHhc-C
Q psy15524 701 EVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPSEVKLVEELQNR-R 779 (930)
Q Consensus 701 ~v~~~F~~~~~~vLv~T~~~~~GlDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~e~~~~~~l~~~-~ 779 (930)
.+++.|++|+.++|||||+++||+|+|+|++||+||+|.++..|+||+||+||.|+.|.+++|+.+.|...++.+++. +
T Consensus 75 ~~~~~fk~g~~~iLv~Td~~~rGiDi~~v~~VIn~d~P~~~~~yihR~GR~gR~g~~G~~i~~~~~~d~~~~~~i~~~~~ 154 (168)
T d2j0sa2 75 SIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYS 154 (168)
T ss_dssp HHHHHHHHTSSCEEEECGGGSSSCCCTTEEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEEGGGHHHHHHHHHHTT
T ss_pred HHHHHHhcCCccEEeccchhcccccccCcceEEEecCCcCHHHHHhhhccccccCCCcEEEEEECHHHHHHHHHHHHHHc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999988888663 4
Q ss_pred Cccch
Q psy15524 780 IRIEE 784 (930)
Q Consensus 780 ~~~~~ 784 (930)
..+++
T Consensus 155 ~~i~e 159 (168)
T d2j0sa2 155 TQIDE 159 (168)
T ss_dssp CCCEE
T ss_pred CcCCC
Confidence 44443
|
| >d1fuka_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Initiation factor 4a species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.95 E-value=3.1e-27 Score=225.62 Aligned_cols=151 Identities=27% Similarity=0.495 Sum_probs=129.6
Q ss_pred ceEEEEEcCc-hhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHHHHHHHH
Q psy15524 625 LKQHFIVTPP-KLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVF 703 (930)
Q Consensus 625 ~~~~~~~~~~-~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~v~ 703 (930)
++|.|+.+.. +.|+..|..++... ...++||||+|+..++.+++.|... ++.+..+||+|++.+|..++
T Consensus 1 I~q~~~~v~~~e~K~~~L~~ll~~~-------~~~k~iIF~~s~~~~~~l~~~L~~~---~~~~~~~~~~~~~~~r~~~l 70 (162)
T d1fuka_ 1 IKQFYVNVEEEEYKYECLTDLYDSI-------SVTQAVIFCNTRRKVEELTTKLRND---KFTVSAIYSDLPQQERDTIM 70 (162)
T ss_dssp CEEEEEEEESGGGHHHHHHHHHHHT-------TCSCEEEEESSHHHHHHHHHHHHHT---TCCEEEECTTSCHHHHHHHH
T ss_pred CEEEEEEeCCcHHHHHHHHHHHHhC-------CCCcEEEEEEEEchHHHHHHHHhhc---CceEEEeccCCchhhHHHHH
Confidence 3678887754 55888888887653 2579999999999999999999875 78899999999999999999
Q ss_pred HHhhcCCCcEEEeccccccccCCCCccEEEEecCCCChhhHHhhhcccccCCCCceEEEEeCcccHHHHHHHHhc-CCcc
Q psy15524 704 KTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPSEVKLVEELQNR-RIRI 782 (930)
Q Consensus 704 ~~F~~~~~~vLv~T~~~~~GlDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~e~~~~~~l~~~-~~~~ 782 (930)
+.|+.|+.+||||||+++||+|+|+|++||+||+|.++..|+||+|||||.|+.|.|+.|++++|..+++.+++. +..+
T Consensus 71 ~~f~~~~~~iLv~Tdv~~rGiDi~~v~~VI~~d~P~~~~~yihR~GR~gR~g~~g~~i~~~~~~d~~~~~~i~~~~~~~~ 150 (162)
T d1fuka_ 71 KEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYSTQI 150 (162)
T ss_dssp HHHHTTSCSEEEEEGGGTTTCCCCSCSEEEESSCCSSGGGGGGSSCSCC-----CEEEEEEETTTHHHHHHHHHHSSCCC
T ss_pred HHHhhcccceeeccccccccccCCCceEEEEeccchhHHHHHhhccccccCCCccEEEEEcCHHHHHHHHHHHHHHcCcC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999888763 4544
Q ss_pred chh
Q psy15524 783 EEI 785 (930)
Q Consensus 783 ~~~ 785 (930)
++.
T Consensus 151 ~~i 153 (162)
T d1fuka_ 151 EEL 153 (162)
T ss_dssp EEC
T ss_pred CCC
Confidence 443
|
| >d1s2ma2 c.37.1.19 (A:252-422) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative ATP-dependent RNA helicase DHH1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.95 E-value=6.4e-27 Score=226.42 Aligned_cols=152 Identities=21% Similarity=0.456 Sum_probs=140.0
Q ss_pred CCCceEEEEEcCchhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHHHHHH
Q psy15524 622 PDSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTE 701 (930)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~ 701 (930)
.+.+.|+|+.++.+.|...|..++... +..++||||+++++++.++..|... |+.+..+||+|++.+|..
T Consensus 4 l~~i~q~yi~v~~~~K~~~L~~ll~~~-------~~~k~iVF~~~~~~~~~l~~~L~~~---g~~~~~~h~~~~~~~r~~ 73 (171)
T d1s2ma2 4 LKGITQYYAFVEERQKLHCLNTLFSKL-------QINQAIIFCNSTNRVELLAKKITDL---GYSCYYSHARMKQQERNK 73 (171)
T ss_dssp CTTEEEEEEECCGGGHHHHHHHHHHHS-------CCSEEEEECSSHHHHHHHHHHHHHH---TCCEEEECTTSCHHHHHH
T ss_pred ccceEEEEEEcCHHHHHHHHHHHHHhC-------CCCceEEEEeeeehhhHhHHhhhcc---cccccccccccchhhhhh
Confidence 467899999999999999999998753 2579999999999999999999986 788999999999999999
Q ss_pred HHHHhhcCCCcEEEeccccccccCCCCccEEEEecCCCChhhHHhhhcccccCCCCceEEEEeCcccHHHHHHHHhc-CC
Q psy15524 702 VFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPSEVKLVEELQNR-RI 780 (930)
Q Consensus 702 v~~~F~~~~~~vLv~T~~~~~GlDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~e~~~~~~l~~~-~~ 780 (930)
+++.|+.|+.++||||++++||+|+|++++||+||+|.++.+|+||+||+||.|+.|.++.|+.+.|...++.+++. +.
T Consensus 74 ~~~~f~~~~~~ilv~Td~~~~Gid~~~v~~VI~~d~p~~~~~y~qr~GR~gR~g~~g~~i~~v~~~e~~~~~~i~~~l~~ 153 (171)
T d1s2ma2 74 VFHEFRQGKVRTLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLINWNDRFNLYKIEQELGT 153 (171)
T ss_dssp HHHHHHTTSSSEEEESSCSSSSCCCTTEEEEEESSCCSSHHHHHHHHCBSSCTTCCEEEEEEECGGGHHHHHHHHHHHTC
T ss_pred hhhhcccCccccccchhHhhhccccceeEEEEecCCcchHHHHHHHhhhcccCCCccEEEEEeCHHHHHHHHHHHHHHCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988888754 44
Q ss_pred ccc
Q psy15524 781 RIE 783 (930)
Q Consensus 781 ~~~ 783 (930)
+++
T Consensus 154 ~~~ 156 (171)
T d1s2ma2 154 EIA 156 (171)
T ss_dssp CCE
T ss_pred CCC
Confidence 443
|
| >d1hv8a2 c.37.1.19 (A:211-365) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative DEAD box RNA helicase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.94 E-value=6.8e-27 Score=222.49 Aligned_cols=151 Identities=28% Similarity=0.505 Sum_probs=137.1
Q ss_pred CCceEEEEEcCchhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHHHHHHH
Q psy15524 623 DSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEV 702 (930)
Q Consensus 623 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~v 702 (930)
..++|.|+.++.+.|+..|..++... +.++||||++++.++.+++.|+.. ++.+..+||++++.+|..+
T Consensus 2 ~nI~~~~i~v~~~~K~~~L~~ll~~~--------~~k~IIF~~s~~~~~~l~~~L~~~---g~~~~~~~~~~~~~~r~~~ 70 (155)
T d1hv8a2 2 ANIEQSYVEVNENERFEALCRLLKNK--------EFYGLVFCKTKRDTKELASMLRDI---GFKAGAIHGDLSQSQREKV 70 (155)
T ss_dssp SSSEEEEEECCGGGHHHHHHHHHCST--------TCCEEEECSSHHHHHHHHHHHHHT---TCCEEEECSSSCHHHHHHH
T ss_pred CCeEEEEEEeChHHHHHHHHHHHccC--------CCCEEEEECchHHHHHHHhhhccc---ccccccccccchhhhhhhh
Confidence 46889999999999999999887532 568999999999999999999985 7889999999999999999
Q ss_pred HHHhhcCCCcEEEeccccccccCCCCccEEEEecCCCChhhHHhhhcccccCCCCceEEEEeCcccHHHHHHHHh-cCCc
Q psy15524 703 FKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPSEVKLVEELQN-RRIR 781 (930)
Q Consensus 703 ~~~F~~~~~~vLv~T~~~~~GlDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~e~~~~~~l~~-~~~~ 781 (930)
+++|++|+..|||||+++++|+|+|++++||+||+|.++.+|+||+||+||.|+.|.+++|+.+.|...++.+++ .+.+
T Consensus 71 ~~~f~~~~~~ilv~T~~~~~Gid~~~v~~Vi~~d~p~~~~~y~qr~GR~gR~g~~g~~i~~~~~~d~~~~~~i~~~~~~~ 150 (155)
T d1hv8a2 71 IRLFKQKKIRILIATDVMSRGIDVNDLNCVINYHLPQNPESYMHRIGRTGRAGKKGKAISIINRREYKKLRYIERAMKLK 150 (155)
T ss_dssp HHHHHTTSSSEEEECTTHHHHCCCSCCSEEEESSCCSCHHHHHHHSTTTCCSSSCCEEEEEECTTSHHHHHHHHHHHTCC
T ss_pred hhhhhcccceeeeehhHHhhhhhhccCcEEEEecCCCCHHHHHHHHHhcCcCCCCceEEEEEchHHHHHHHHHHHHHCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999988887764 2444
Q ss_pred cch
Q psy15524 782 IEE 784 (930)
Q Consensus 782 ~~~ 784 (930)
+++
T Consensus 151 i~~ 153 (155)
T d1hv8a2 151 IKK 153 (155)
T ss_dssp CCC
T ss_pred ccc
Confidence 443
|
| >d1oywa3 c.37.1.19 (A:207-406) RecQ helicase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecQ helicase domain species: Escherichia coli [TaxId: 562]
Probab=99.93 E-value=5.7e-26 Score=223.91 Aligned_cols=142 Identities=15% Similarity=0.340 Sum_probs=129.1
Q ss_pred EEEEcCchhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHHHHHHHHHHhh
Q psy15524 628 HFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFR 707 (930)
Q Consensus 628 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~v~~~F~ 707 (930)
.|.+++...++..|..++... ...++||||+|+..++.++..|... ++.+..+||+|++.+|..+++.|+
T Consensus 8 ~y~v~~~~~k~~~L~~~l~~~-------~~~~~IIF~~t~~~~~~l~~~l~~~---~~~~~~~h~~~~~~~r~~~~~~f~ 77 (200)
T d1oywa3 8 RYMLMEKFKPLDQLMRYVQEQ-------RGKSGIIYCNSRAKVEDTAARLQSK---GISAAAYHAGLENNVRADVQEKFQ 77 (200)
T ss_dssp EEEEEECSSHHHHHHHHHHHT-------TTCCEEEECSSHHHHHHHHHHHHHT---TCCEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCcHHHHHHHHHHhc-------CCCCEEEEEeeehhhHHhhhhhccC---CceeEEecCCCcHHHHHHHHHHHh
Confidence 455566677888888887653 1568999999999999999999875 788999999999999999999999
Q ss_pred cCCCcEEEeccccccccCCCCccEEEEecCCCChhhHHhhhcccccCCCCceEEEEeCcccHHHHHHHHhcC
Q psy15524 708 SVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPSEVKLVEELQNRR 779 (930)
Q Consensus 708 ~~~~~vLv~T~~~~~GlDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~e~~~~~~l~~~~ 779 (930)
+|+.+|||||++++||+|+|+|++|||||+|.++.+|+||+|||||.|+.|.+++|+.+.|..+++++.+..
T Consensus 78 ~g~~~ilvaTd~~~~GiD~p~v~~VI~~~~P~~~~~y~qr~GR~gR~g~~g~ai~~~~~~d~~~l~~~i~~~ 149 (200)
T d1oywa3 78 RDDLQIVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCLEEK 149 (200)
T ss_dssp TTSCSEEEECTTSCTTTCCTTCCEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHHHHHHHHHTS
T ss_pred cccceEEEecchhhhccCCCCCCEEEECCCccchHHHHHHhhhhhcCCCCceEEEecCHHHHHHHHhhhhcc
Confidence 999999999999999999999999999999999999999999999999999999999999999988876554
|
| >d1t5ia_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Spliceosome RNA helicase BAT1 (UAP56) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.92 E-value=3.5e-25 Score=212.82 Aligned_cols=144 Identities=24% Similarity=0.449 Sum_probs=131.4
Q ss_pred CceEEEEEcCchhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHHHHHHHH
Q psy15524 624 SLKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVF 703 (930)
Q Consensus 624 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~v~ 703 (930)
++.|+|+.+..+.|...|..++... ...++||||++++.++.+++.|... ++.+..+||+|++.+|..++
T Consensus 1 ~l~q~~v~~~~~~K~~~L~~ll~~~-------~~~k~iIF~~~~~~~~~l~~~L~~~---~~~~~~ihg~~~~~~r~~~l 70 (168)
T d1t5ia_ 1 GLQQYYVKLKDNEKNRKLFDLLDVL-------EFNQVVIFVKSVQRCIALAQLLVEQ---NFPAIAIHRGMPQEERLSRY 70 (168)
T ss_dssp CCEEEEEECCGGGHHHHHHHHHHHS-------CCSSEEEECSSHHHHHHHHHHHHHT---TCCEEEECTTSCHHHHHHHH
T ss_pred CcEEEEEEeChHHHHHHHHHHHHhC-------CCCeEEEEEeeeecchhhhhhhccc---cccccccccccchhhhhhhh
Confidence 3789999999999999999988754 1568999999999999999999875 78899999999999999999
Q ss_pred HHhhcCCCcEEEeccccccccCCCCccEEEEecCCCChhhHHhhhcccccCCCCceEEEEeCcc-cHHHHHHHHh
Q psy15524 704 KTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPS-EVKLVEELQN 777 (930)
Q Consensus 704 ~~F~~~~~~vLv~T~~~~~GlDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~-e~~~~~~l~~ 777 (930)
++|++|+.+|||||+++++|+|+|++++||+||+|.++..|+||+||+||.|+.|.|++|+.+. +..++..+++
T Consensus 71 ~~F~~g~~~iLv~T~~~~~Gid~~~~~~vi~~~~p~~~~~yiqr~GR~gR~g~~g~~i~l~~~~~~~~~~~~i~~ 145 (168)
T d1t5ia_ 71 QQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQD 145 (168)
T ss_dssp HHHHTTSCSEEEESSCCSTTCCGGGCSEEEESSCCSSHHHHHHHHHHHTGGGCCCEEEEEECSHHHHHHHHHHHH
T ss_pred hhhccccceeeeccccccchhhcccchhhhhhhcccchhhHhhhhhhcccCCCccEEEEEECchHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999885 4456666654
|
| >d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecQ helicase domain species: Escherichia coli [TaxId: 562]
Probab=99.92 E-value=4.3e-26 Score=229.45 Aligned_cols=191 Identities=24% Similarity=0.298 Sum_probs=143.1
Q ss_pred CCCCCCCCHHHHHHHHhcCCCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEE
Q psy15524 392 YEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVI 471 (930)
Q Consensus 392 f~~l~~l~~~~~~~l~~~~~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~li 471 (930)
.+.+ +|++...+.|++.|||..++|+|.+||+.+++|+|+++++|||||||++|.+|++.. ..++++
T Consensus 4 ~e~~-~l~~~~~~~l~~~fg~~~~rp~Q~~ai~~~l~g~~vlv~apTGsGKT~~~~~~~~~~------------~~~~~~ 70 (206)
T d1oywa2 4 AEVL-NLESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLL------------NGLTVV 70 (206)
T ss_dssp CCCS-SHHHHHHHHHHHTTCCSSCCTTHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHS------------SSEEEE
T ss_pred hhhC-CCCHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCCCcchhhhhhhhc------------cCceEE
Confidence 4556 899999999999999999999999999999999999999999999999999998742 456999
Q ss_pred EccCHHHHHHHHHHHHHhhccCCCcceEEEeCCC----chHHHHHHHhcCCcEEEECchhHHHhhhccCCcccccceEEE
Q psy15524 472 ILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGE----KMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLV 547 (930)
Q Consensus 472 l~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~----~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lV 547 (930)
++|+++|+.|+.+.++..+... ....+.. .............+|+++||.++...... ......+++++|
T Consensus 71 v~P~~~L~~q~~~~l~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~~~~~~~~-~~~~~~~v~~lv 144 (206)
T d1oywa2 71 VSPLISLMKDQVDQLQANGVAA-----ACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFL-EHLAHWNPVLLA 144 (206)
T ss_dssp ECSCHHHHHHHHHHHHHTTCCE-----EEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHH-HHHTTSCEEEEE
T ss_pred eccchhhhhhHHHHHHhhcccc-----cccccccccccchhHHHHHhcCCceEEEEechhhhchhhc-ccchhheeeeee
Confidence 9999999999999998876432 1222221 11222233445689999999988654433 234567899999
Q ss_pred EecchhhhhcCcH--HHHHHHHHHHhhcCccceEEEEccccCHHHH-HHHhh-hcCCCE
Q psy15524 548 LDEADRILDQGYE--RDIAEFLEILKKQKPQFQSILLSATLTPAVQ-RLAGM-TLQNPI 602 (930)
Q Consensus 548 lDEah~l~~~g~~--~~l~~i~~~l~~~~~~~q~vl~SAT~~~~~~-~l~~~-~~~~~~ 602 (930)
+||||++.++++. ..+..+. .+....++.|+++||||+++.+. ++.+. .+.+|+
T Consensus 145 iDEaH~~~~~~~~~~~~~~~~~-~l~~~~~~~~ii~lSATl~~~v~~di~~~L~l~~p~ 202 (206)
T d1oywa2 145 VDEAHCISQWGHDFRPEYAALG-QLRQRFPTLPFMALTATADDTTRQDIVRLLGLNDPL 202 (206)
T ss_dssp ESSGGGGCTTSSCCCHHHHGGG-GHHHHCTTSCEEEEESCCCHHHHHHHHHHHTCCSCE
T ss_pred eeeeeeeeccccchHHHHHHHH-HHHHhCCCCceEEEEeCCCHHHHHHHHHHcCCCCCc
Confidence 9999999988743 2222222 22222347899999999999875 45555 478884
|
| >d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Hel308 helicase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.92 E-value=3.6e-25 Score=221.71 Aligned_cols=188 Identities=21% Similarity=0.235 Sum_probs=147.5
Q ss_pred CCHHHHHHHHhcCCCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHH
Q psy15524 398 IHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRE 477 (930)
Q Consensus 398 l~~~~~~~l~~~~~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~Ptre 477 (930)
+++.+...|.+ .||.+|+|+|+++++.+++|+|++++||||||||+++.++++..+.. +.++|+++|+++
T Consensus 10 ~~~~~~~~l~~-~g~~~l~~~Q~~ai~~l~~~~~~il~apTGsGKT~~a~l~i~~~~~~---------~~~vl~l~P~~~ 79 (202)
T d2p6ra3 10 ISSYAVGILKE-EGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIK---------GGKSLYVVPLRA 79 (202)
T ss_dssp HHHHHHHHHHC-C---CCCCCCHHHHHHHTTCSCEEEECSSHHHHHHHHHHHHHHHHHT---------TCCEEEEESSHH
T ss_pred hhHHHHHHHHH-cCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCchhHHHHHHHHHHhhc---------cCcceeecccHH
Confidence 56778888874 89999999999999999999999999999999999999999987754 457999999999
Q ss_pred HHHHHHHHHHHhhccCCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhccCCcccccceEEEEecchhhhhc
Q psy15524 478 LALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQ 557 (930)
Q Consensus 478 La~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~l~~~ 557 (930)
|+.|+.+.++++..... ......|+..... .....++|+++||..+...+.+. ...+.+++++|+||+|++.+.
T Consensus 80 L~~q~~~~~~~~~~~~~--~v~~~~~~~~~~~---~~~~~~~ii~~~~~~~~~~~~~~-~~~~~~~~~ii~DE~h~~~~~ 153 (202)
T d2p6ra3 80 LAGEKYESFKKWEKIGL--RIGISTGDYESRD---EHLGDCDIIVTTSEKADSLIRNR-ASWIKAVSCLVVDEIHLLDSE 153 (202)
T ss_dssp HHHHHHHHHTTTTTTTC--CEEEECSSCBCCS---SCSTTCSEEEEEHHHHHHHHHTT-CSGGGGCCEEEETTGGGGGCT
T ss_pred HHHHHHHHHHHHhhccc--cceeeccCccccc---ccccccceeeeccHHHHHHHhcc-chhhhhhhhccccHHHHhccc
Confidence 99999999988765332 2333444433222 12246889999999998887763 456789999999999999988
Q ss_pred CcHHHHHHHHHHHhhcCccceEEEEccccCHHHHHHHhhhcCCCEE
Q psy15524 558 GYERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQ 603 (930)
Q Consensus 558 g~~~~l~~i~~~l~~~~~~~q~vl~SAT~~~~~~~l~~~~~~~~~~ 603 (930)
++...++.++..+....++.|++++|||+++ ..+++. ++..+.+
T Consensus 154 ~r~~~~~~~l~~i~~~~~~~~~l~lSATl~n-~~~~~~-~l~~~~~ 197 (202)
T d2p6ra3 154 KRGATLEILVTKMRRMNKALRVIGLSATAPN-VTEIAE-WLDADYY 197 (202)
T ss_dssp TTHHHHHHHHHHHHHHCTTCEEEEEECCCTT-HHHHHH-HTTCEEE
T ss_pred ccchHHHHHHHHHHhcCCCCcEEEEcCCCCc-HHHHHH-HcCCCee
Confidence 8888888888888877778999999999976 455553 4444433
|
| >d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Helicase-like "domain" of reverse gyrase domain: Helicase-like "domain" of reverse gyrase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.90 E-value=2.8e-24 Score=220.95 Aligned_cols=175 Identities=17% Similarity=0.205 Sum_probs=129.4
Q ss_pred CCHHHHHHHHhcCCCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHH
Q psy15524 398 IHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRE 477 (930)
Q Consensus 398 l~~~~~~~l~~~~~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~Ptre 477 (930)
+.+...+.+. .++.+|+++|+++|+.++.|+|++++||||+|||+++++|++..+.. |.++|||+||++
T Consensus 29 ~~~~~~~~~~--~~~~~p~~~Q~~~i~~~l~g~~~~i~apTGsGKT~~~~~~~~~~~~~---------~~rvliv~Pt~~ 97 (237)
T d1gkub1 29 LLKEFVEFFR--KCVGEPRAIQKMWAKRILRKESFAATAPTGVGKTSFGLAMSLFLALK---------GKRCYVIFPTSL 97 (237)
T ss_dssp HHHHHHHHHH--TTTCSCCHHHHHHHHHHHTTCCEECCCCBTSCSHHHHHHHHHHHHTT---------SCCEEEEESCHH
T ss_pred hHHHHHHHHH--hccCCCCHHHHHHHHHHHCCCCEEEEecCCChHHHHHHHHHHHHHHh---------cCeEEEEeccHH
Confidence 3444545443 37779999999999999999999999999999999999999876543 678999999999
Q ss_pred HHHHHHHHHHHhhccCCCcc---eEEEeCCCchHHHHHHH--hcCCcEEEECchhHHHhhhccCCcccccceEEEEecch
Q psy15524 478 LALQTLEIFTKLCKSFTWIV---PSWLTGGEKMKSEKARI--RKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEAD 552 (930)
Q Consensus 478 La~Q~~~~~~~~~~~~~~~~---~~~~~gg~~~~~~~~~~--~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah 552 (930)
|+.|+++.+++++...+... .....++.........+ ..+++|+|+||++|.++.. .+++++++|+||||
T Consensus 98 La~Q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Ilv~Tp~~l~~~~~-----~~~~~~~vVvDE~d 172 (237)
T d1gkub1 98 LVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRNFKIVITTTQFLSKHYR-----ELGHFDFIFVDDVD 172 (237)
T ss_dssp HHHHHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGGCSEEEEEHHHHHHCST-----TSCCCSEEEESCHH
T ss_pred HHHHHHHHHHHHHHHcCCceEEEEeeeecccchhhhhhhhccccccceeccChHHHHHhhh-----hcCCCCEEEEEChh
Confidence 99999999999887654322 33333443333333222 2457999999999876544 35689999999999
Q ss_pred hhhhcCcHHHHHHHHHHHh----------hcCccceEEEEccccCHHH
Q psy15524 553 RILDQGYERDIAEFLEILK----------KQKPQFQSILLSATLTPAV 590 (930)
Q Consensus 553 ~l~~~g~~~~l~~i~~~l~----------~~~~~~q~vl~SAT~~~~~ 590 (930)
.+++.+.. +..++..+. ......|++++|||+++..
T Consensus 173 ~~l~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~SAT~~~~~ 218 (237)
T d1gkub1 173 AILKASKN--VDKLLHLLGFHYDLKTKSWVGEARGCLMVSTATAKKGK 218 (237)
T ss_dssp HHHTSTHH--HHHHHHHTTEEEETTTTEEEECCSSEEEECCCCSCCCT
T ss_pred hhhhcccc--hhHHHHhcCChHHHHHHHhhCCCCCeEEEEeCCCCccc
Confidence 99876533 333333321 2244678999999998654
|
| >d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Hel308 helicase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.90 E-value=5.2e-24 Score=213.12 Aligned_cols=164 Identities=20% Similarity=0.243 Sum_probs=134.3
Q ss_pred CCCccCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHH
Q psy15524 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKL 80 (930)
Q Consensus 1 ~g~~~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~ 80 (930)
.||++|+|+|++|++.+++|+|+++++|||+|||.++.++++..+.. +.++|+++|+++|+.|+.++++++
T Consensus 21 ~g~~~l~~~Q~~ai~~l~~~~~~il~apTGsGKT~~a~l~i~~~~~~---------~~~vl~l~P~~~L~~q~~~~~~~~ 91 (202)
T d2p6ra3 21 EGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIK---------GGKSLYVVPLRALAGEKYESFKKW 91 (202)
T ss_dssp C---CCCCCCHHHHHHHTTCSCEEEECSSHHHHHHHHHHHHHHHHHT---------TCCEEEEESSHHHHHHHHHHHTTT
T ss_pred cCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCchhHHHHHHHHHHhhc---------cCcceeecccHHHHHHHHHHHHHH
Confidence 48999999999999999999999999999999999999999887754 346999999999999999999887
Q ss_pred hhhcCCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCcHHHHHHHHHH
Q psy15524 81 CKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEI 160 (930)
Q Consensus 81 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~~~~~~~i~~~ 160 (930)
.... ..+....++..... .....++++++||..+...+.+ ....+..+++||+||+|.+.++++...+..++..
T Consensus 92 ~~~~--~~v~~~~~~~~~~~---~~~~~~~ii~~~~~~~~~~~~~-~~~~~~~~~~ii~DE~h~~~~~~r~~~~~~~l~~ 165 (202)
T d2p6ra3 92 EKIG--LRIGISTGDYESRD---EHLGDCDIIVTTSEKADSLIRN-RASWIKAVSCLVVDEIHLLDSEKRGATLEILVTK 165 (202)
T ss_dssp TTTT--CCEEEECSSCBCCS---SCSTTCSEEEEEHHHHHHHHHT-TCSGGGGCCEEEETTGGGGGCTTTHHHHHHHHHH
T ss_pred hhcc--ccceeeccCccccc---ccccccceeeeccHHHHHHHhc-cchhhhhhhhccccHHHHhcccccchHHHHHHHH
Confidence 6532 33444444433221 1234588999999999888765 4456789999999999999999988888889999
Q ss_pred HhhcCCCceEEEEEeecCC
Q psy15524 161 LKKQKPQFQSILLSATLTP 179 (930)
Q Consensus 161 l~~~~~~~~~i~lSAT~~~ 179 (930)
++..++++|+++||||+++
T Consensus 166 i~~~~~~~~~l~lSATl~n 184 (202)
T d2p6ra3 166 MRRMNKALRVIGLSATAPN 184 (202)
T ss_dssp HHHHCTTCEEEEEECCCTT
T ss_pred HHhcCCCCcEEEEcCCCCc
Confidence 9988889999999999876
|
| >d1c4oa2 c.37.1.19 (A:410-583) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Nucleotide excision repair enzyme UvrB species: Thermus thermophilus [TaxId: 274]
Probab=99.89 E-value=8.4e-23 Score=192.74 Aligned_cols=132 Identities=22% Similarity=0.306 Sum_probs=110.4
Q ss_pred CchhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHHHHHHHHHHhhcCCCc
Q psy15524 633 PPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSVKSG 712 (930)
Q Consensus 633 ~~~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~v~~~F~~~~~~ 712 (930)
+.+.....+...+..... .+.++||||+|+++++.+++.|... |+.+..+||+|++.+|.+++++|++|+..
T Consensus 12 p~~~qv~dll~~i~~~~~-----~g~r~lvfc~t~~~~~~l~~~L~~~---Gi~a~~~Hg~~~~~eR~~~l~~F~~G~~~ 83 (174)
T d1c4oa2 12 PTENQILDLMEGIRERAA-----RGERTLVTVLTVRMAEELTSFLVEH---GIRARYLHHELDAFKRQALIRDLRLGHYD 83 (174)
T ss_dssp CSTTHHHHHHHHHHHHHH-----TTCEEEEECSSHHHHHHHHHHHHHT---TCCEEEECTTCCHHHHHHHHHHHHTTSCS
T ss_pred eCCCCHHHHHHHHHHHHh-----cCCcEEEEEcchhHHHHHHHHHHhc---CCceEEEecccchHHHHHHHHHHHCCCeE
Confidence 444445556655554322 2779999999999999999999985 89999999999999999999999999999
Q ss_pred EEEeccccccccCCCCccEEEEecCCC-----ChhhHHhhhcccccCCCCceEEEEeCcccHHHHH
Q psy15524 713 VLICTDVAARGLDLPLVDWIVQYTAPS-----SSTDYVHRVGRTARVGHEGSSLLFLIPSEVKLVE 773 (930)
Q Consensus 713 vLv~T~~~~~GlDip~v~~VI~~~~p~-----s~~~y~qr~GRagR~g~~g~~~~~~~~~e~~~~~ 773 (930)
|||||++++||+|+|+|++||+||+|. +...|+||+||+||.|+ |.++++.......+.+
T Consensus 84 vLVaT~v~~~GiDip~V~~Vi~~~~~~~~~~~~~~~~iq~~GR~gR~~~-g~~~~~~~~~~~~~~~ 148 (174)
T d1c4oa2 84 CLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNAR-GEVWLYADRVSEAMQR 148 (174)
T ss_dssp EEEESCCCCTTCCCTTEEEEEETTTTSCSGGGSHHHHHHHHGGGTTSTT-CEEEEECSSCCHHHHH
T ss_pred EEEeeeeeeeeccCCCCcEEEEeccccccccchhHHHHHHhhhhhhcCC-CeeEEeecCCCHHHHH
Confidence 999999999999999999999999776 45789999999999775 7777776655544333
|
| >d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Helicase-like "domain" of reverse gyrase domain: Helicase-like "domain" of reverse gyrase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.89 E-value=2.1e-23 Score=214.35 Aligned_cols=163 Identities=18% Similarity=0.243 Sum_probs=124.7
Q ss_pred CCccCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHHh
Q psy15524 2 NITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLC 81 (930)
Q Consensus 2 g~~~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~ 81 (930)
|+.+|+++|+++++.++.|+|++++||||+|||++++++++..... +.++||++||++|+.|+++++++++
T Consensus 40 ~~~~p~~~Q~~~i~~~l~g~~~~i~apTGsGKT~~~~~~~~~~~~~---------~~rvliv~Pt~~La~Q~~~~l~~~~ 110 (237)
T d1gkub1 40 CVGEPRAIQKMWAKRILRKESFAATAPTGVGKTSFGLAMSLFLALK---------GKRCYVIFPTSLLVIQAAETIRKYA 110 (237)
T ss_dssp TTCSCCHHHHHHHHHHHTTCCEECCCCBTSCSHHHHHHHHHHHHTT---------SCCEEEEESCHHHHHHHHHHHHHHH
T ss_pred ccCCCCHHHHHHHHHHHCCCCEEEEecCCChHHHHHHHHHHHHHHh---------cCeEEEEeccHHHHHHHHHHHHHHH
Confidence 5778999999999999999999999999999999999999876643 4579999999999999999999998
Q ss_pred hhcCC---ceeEEeeCCCchHHHHHHhc--CCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCcHHHHHH
Q psy15524 82 KSFTW---IVPSWLTGGEKMKSEKARIR--KGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAE 156 (930)
Q Consensus 82 ~~~~~---~~~~~~~g~~~~~~~~~~l~--~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~~~~~~~ 156 (930)
...+. .......++.........+. .+++|+|+||+++.+... .+.++++|||||+|.+++++.. +..
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Ilv~Tp~~l~~~~~-----~~~~~~~vVvDE~d~~l~~~~~--~~~ 183 (237)
T d1gkub1 111 EKAGVGTENLIGYYHGRIPKREKENFMQNLRNFKIVITTTQFLSKHYR-----ELGHFDFIFVDDVDAILKASKN--VDK 183 (237)
T ss_dssp TTTCCSGGGSEEECCSSCCSHHHHHHHHSGGGCSEEEEEHHHHHHCST-----TSCCCSEEEESCHHHHHTSTHH--HHH
T ss_pred HHcCCceEEEEeeeecccchhhhhhhhccccccceeccChHHHHHhhh-----hcCCCCEEEEEChhhhhhcccc--hhH
Confidence 76542 22334444444444443333 458999999999876543 3678999999999999887643 233
Q ss_pred HHHHH----------hhcCCCceEEEEEeecCCC
Q psy15524 157 FLEIL----------KKQKPQFQSILLSATLTPA 180 (930)
Q Consensus 157 i~~~l----------~~~~~~~~~i~lSAT~~~~ 180 (930)
+...+ .......|++++|||+++.
T Consensus 184 ~~~~~g~~~~~~~~~~~~~~~~~~i~~SAT~~~~ 217 (237)
T d1gkub1 184 LLHLLGFHYDLKTKSWVGEARGCLMVSTATAKKG 217 (237)
T ss_dssp HHHHTTEEEETTTTEEEECCSSEEEECCCCSCCC
T ss_pred HHHhcCChHHHHHHHhhCCCCCeEEEEeCCCCcc
Confidence 33332 1234567899999998753
|
| >d1t5la2 c.37.1.19 (A:415-595) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Nucleotide excision repair enzyme UvrB species: Bacillus caldotenax [TaxId: 1395]
Probab=99.89 E-value=1.1e-22 Score=195.92 Aligned_cols=127 Identities=26% Similarity=0.387 Sum_probs=105.8
Q ss_pred CchhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHHHHHHHHHHhhcCCCc
Q psy15524 633 PPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSVKSG 712 (930)
Q Consensus 633 ~~~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~v~~~F~~~~~~ 712 (930)
|.......+...+...... +.++||||+++..++.++..|... |+.+..+||+|++.+|..++++|++|+.+
T Consensus 12 p~~~qvd~ll~~i~~~~~~-----~~~~iif~~~~~~~~~~~~~l~~~---g~~~~~~hg~~~~~eR~~~l~~Fr~g~~~ 83 (181)
T d1t5la2 12 PTKGQIDDLIGEIRERVER-----NERTLVTTLTKKMAEDLTDYLKEA---GIKVAYLHSEIKTLERIEIIRDLRLGKYD 83 (181)
T ss_dssp CSTTHHHHHHHHHHHHHHT-----TCEEEEECSSHHHHHHHHHHHHTT---TCCEEEECSSCCHHHHHHHHHHHHHTSCS
T ss_pred ECCCcHHHHHHHHHHHHhc-----CCeEEEEeehhhhhHHHHHHHHhC---CcceeEecCCccHHHHHHHHHHHHCCCCC
Confidence 3344445555555543221 679999999999999999999975 89999999999999999999999999999
Q ss_pred EEEeccccccccCCCCccEEEEecCCC-----ChhhHHhhhcccccCCCCceEEEEeCccc
Q psy15524 713 VLICTDVAARGLDLPLVDWIVQYTAPS-----SSTDYVHRVGRTARVGHEGSSLLFLIPSE 768 (930)
Q Consensus 713 vLv~T~~~~~GlDip~v~~VI~~~~p~-----s~~~y~qr~GRagR~g~~g~~~~~~~~~e 768 (930)
|||||++++||+|+|+|++||+||+|. +...|+||+|||||.|. |..+++.....
T Consensus 84 vLVaTdv~~rGiDip~v~~VI~~d~p~~~~~~s~~~yi~R~GRagR~g~-~~~~~~~~~~~ 143 (181)
T d1t5la2 84 VLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNAN-GHVIMYADTIT 143 (181)
T ss_dssp EEEESCCCSSSCCCTTEEEEEETTTTSCSGGGSHHHHHHHHGGGTTSTT-CEEEEECSSCC
T ss_pred EEEehhHHHccCCCCCCCEEEEecCCcccccccHHHHHHHHHhhccccC-ceeEeecchhh
Confidence 999999999999999999999999995 68899999999999885 44444444333
|
| >d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecQ helicase domain species: Escherichia coli [TaxId: 562]
Probab=99.88 E-value=3.4e-24 Score=215.38 Aligned_cols=164 Identities=25% Similarity=0.277 Sum_probs=120.3
Q ss_pred CCCccCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHH
Q psy15524 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKL 80 (930)
Q Consensus 1 ~g~~~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~ 80 (930)
+||+.++|+|++|++++++|+|+++++|||||||++|.+|++.. ..++++++|+++|++|+.+.++..
T Consensus 21 fg~~~~rp~Q~~ai~~~l~g~~vlv~apTGsGKT~~~~~~~~~~------------~~~~~~v~P~~~L~~q~~~~l~~~ 88 (206)
T d1oywa2 21 FGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLL------------NGLTVVVSPLISLMKDQVDQLQAN 88 (206)
T ss_dssp TCCSSCCTTHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHS------------SSEEEEECSCHHHHHHHHHHHHHT
T ss_pred cCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCCCcchhhhhhhhc------------cCceEEeccchhhhhhHHHHHHhh
Confidence 59999999999999999999999999999999999999998753 345999999999999999999887
Q ss_pred hhhcCCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCc--HHHHHHHH
Q psy15524 81 CKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGY--ERDIAEFL 158 (930)
Q Consensus 81 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~--~~~~~~i~ 158 (930)
+.... .......++..............+|+++||+++...... ......+++++|+||+|++.++++ ...+.. +
T Consensus 89 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~~~~~~~~-~~~~~~~v~~lviDEaH~~~~~~~~~~~~~~~-~ 165 (206)
T d1oywa2 89 GVAAA-CLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFL-EHLAHWNPVLLAVDEAHCISQWGHDFRPEYAA-L 165 (206)
T ss_dssp TCCEE-EECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHH-HHHTTSCEEEEEESSGGGGCTTSSCCCHHHHG-G
T ss_pred ccccc-ccccccccccchhHHHHHhcCCceEEEEechhhhchhhc-ccchhheeeeeeeeeeeeeeccccchHHHHHH-H
Confidence 64321 111111111112222333456689999999987544332 234467899999999999998873 333333 2
Q ss_pred HHHhhcCCCceEEEEEeecCC
Q psy15524 159 EILKKQKPQFQSILLSATLTP 179 (930)
Q Consensus 159 ~~l~~~~~~~~~i~lSAT~~~ 179 (930)
..+....+++|+++||||+++
T Consensus 166 ~~l~~~~~~~~ii~lSATl~~ 186 (206)
T d1oywa2 166 GQLRQRFPTLPFMALTATADD 186 (206)
T ss_dssp GGHHHHCTTSCEEEEESCCCH
T ss_pred HHHHHhCCCCceEEEEeCCCH
Confidence 333444467899999999875
|
| >d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase PF2015 species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.84 E-value=1.8e-20 Score=187.04 Aligned_cols=161 Identities=23% Similarity=0.207 Sum_probs=123.2
Q ss_pred ccCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHHhhh
Q psy15524 4 TQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKS 83 (930)
Q Consensus 4 ~~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~ 83 (930)
-+|+++|++++..+. ++|+|+++|||+|||+++++++...+.. .+.++|+++|+++|+.|+++.+.+++..
T Consensus 8 ~~pr~~Q~~~~~~~~-~~n~lv~~pTGsGKT~i~~~~~~~~~~~--------~~~~il~i~P~~~L~~q~~~~~~~~~~~ 78 (200)
T d1wp9a1 8 IQPRIYQEVIYAKCK-ETNCLIVLPTGLGKTLIAMMIAEYRLTK--------YGGKVLMLAPTKPLVLQHAESFRRLFNL 78 (200)
T ss_dssp HCCCHHHHHHHHHGG-GSCEEEECCTTSCHHHHHHHHHHHHHHH--------SCSCEEEECSSHHHHHHHHHHHHHHBCS
T ss_pred CCCCHHHHHHHHHHh-cCCeEEEeCCCCcHHHHHHHHHHHHHHh--------cCCcEEEEcCchHHHHHHHHHHHHhhcc
Confidence 369999999999876 5689999999999999999988777654 2345999999999999999999999765
Q ss_pred cCCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCcHHHHHHHHHHHhh
Q psy15524 84 FTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKK 163 (930)
Q Consensus 84 ~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~~~~~~~i~~~l~~ 163 (930)
.+ ..+..+.++....... .....++++++||+.+...+.. ..+.++++++||+||||++....... .+...+..
T Consensus 79 ~~-~~v~~~~~~~~~~~~~-~~~~~~~i~i~t~~~~~~~~~~-~~~~~~~~~~vIiDE~H~~~~~~~~~---~~~~~~~~ 152 (200)
T d1wp9a1 79 PP-EKIVALTGEKSPEERS-KAWARAKVIVATPQTIENDLLA-GRISLEDVSLIVFDEAHRAVGNYAYV---FIAREYKR 152 (200)
T ss_dssp CG-GGEEEECSCSCHHHHH-HHHHHCSEEEECHHHHHHHHHT-TSCCTTSCSEEEEETGGGCSTTCHHH---HHHHHHHH
T ss_pred cc-cceeeeecccchhHHH-HhhhcccccccccchhHHHHhh-hhhhccccceEEEEehhhhhcchhHH---HHHHHHHh
Confidence 43 4555555555544333 3334578999999999988776 56678899999999999987655332 23333334
Q ss_pred cCCCceEEEEEeecCC
Q psy15524 164 QKPQFQSILLSATLTP 179 (930)
Q Consensus 164 ~~~~~~~i~lSAT~~~ 179 (930)
...+++++++|||++.
T Consensus 153 ~~~~~~~l~~SATp~~ 168 (200)
T d1wp9a1 153 QAKNPLVIGLTASPGS 168 (200)
T ss_dssp HCSSCCEEEEESCSCS
T ss_pred cCCCCcEEEEEecCCC
Confidence 4556799999999864
|
| >d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase PF2015 species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.84 E-value=1.6e-20 Score=187.48 Aligned_cols=168 Identities=24% Similarity=0.232 Sum_probs=124.3
Q ss_pred CCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHHHHhhc
Q psy15524 412 ITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCK 491 (930)
Q Consensus 412 ~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~ 491 (930)
+-+|+++|.+++..+. ++|++++||||||||+++++++...+.. .+.+++|++|+++|+.|+++.+.+++.
T Consensus 7 ~~~pr~~Q~~~~~~~~-~~n~lv~~pTGsGKT~i~~~~~~~~~~~--------~~~~il~i~P~~~L~~q~~~~~~~~~~ 77 (200)
T d1wp9a1 7 LIQPRIYQEVIYAKCK-ETNCLIVLPTGLGKTLIAMMIAEYRLTK--------YGGKVLMLAPTKPLVLQHAESFRRLFN 77 (200)
T ss_dssp HHCCCHHHHHHHHHGG-GSCEEEECCTTSCHHHHHHHHHHHHHHH--------SCSCEEEECSSHHHHHHHHHHHHHHBC
T ss_pred CCCCCHHHHHHHHHHh-cCCeEEEeCCCCcHHHHHHHHHHHHHHh--------cCCcEEEEcCchHHHHHHHHHHHHhhc
Confidence 3479999999999876 5679999999999999999888777654 245799999999999999999999876
Q ss_pred cCCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhccCCcccccceEEEEecchhhhhcCcHHHHHHHHHHHh
Q psy15524 492 SFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILK 571 (930)
Q Consensus 492 ~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~l~~~g~~~~l~~i~~~l~ 571 (930)
..+. .+....++... ..........+|+++||+++...+.. ....+++++++|+||||++.+......+... +.
T Consensus 78 ~~~~-~v~~~~~~~~~-~~~~~~~~~~~i~i~t~~~~~~~~~~-~~~~~~~~~~vIiDE~H~~~~~~~~~~~~~~---~~ 151 (200)
T d1wp9a1 78 LPPE-KIVALTGEKSP-EERSKAWARAKVIVATPQTIENDLLA-GRISLEDVSLIVFDEAHRAVGNYAYVFIARE---YK 151 (200)
T ss_dssp SCGG-GEEEECSCSCH-HHHHHHHHHCSEEEECHHHHHHHHHT-TSCCTTSCSEEEEETGGGCSTTCHHHHHHHH---HH
T ss_pred cccc-ceeeeecccch-hHHHHhhhcccccccccchhHHHHhh-hhhhccccceEEEEehhhhhcchhHHHHHHH---HH
Confidence 5443 33444444443 33444445679999999999887766 4567889999999999998765533332222 22
Q ss_pred hcCccceEEEEccccCHHHHHHH
Q psy15524 572 KQKPQFQSILLSATLTPAVQRLA 594 (930)
Q Consensus 572 ~~~~~~q~vl~SAT~~~~~~~l~ 594 (930)
......+++++|||++.....+.
T Consensus 152 ~~~~~~~~l~~SATp~~~~~~~~ 174 (200)
T d1wp9a1 152 RQAKNPLVIGLTASPGSTPEKIM 174 (200)
T ss_dssp HHCSSCCEEEEESCSCSSHHHHH
T ss_pred hcCCCCcEEEEEecCCCcHHHHH
Confidence 22346789999999865544443
|
| >d1jr6a_ c.37.1.14 (A:) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Probab=99.83 E-value=2.8e-21 Score=177.02 Aligned_cols=100 Identities=22% Similarity=0.339 Sum_probs=91.2
Q ss_pred CceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHHHHHHHHHHhhcCCCcEEEeccccccccCCCCccEEEEec
Q psy15524 657 ESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYT 736 (930)
Q Consensus 657 ~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~v~~~F~~~~~~vLv~T~~~~~GlDip~v~~VI~~~ 736 (930)
.+++||||+|++.|+.+++.|++. |+.+..+||+|+++ .|++|+.+||||||+++||+| |++++||+++
T Consensus 35 ~~k~IVFc~t~~~ae~la~~L~~~---G~~~~~~H~~~~~~-------~~~~~~~~vlvaTd~~~~GiD-~~v~~Vi~~~ 103 (138)
T d1jr6a_ 35 GGRHLIFCHSKKKCDELAAKLVAL---GINAVAYYRGLDVS-------VIPTNGDVVVVATDALMTGFT-GDFDSVIDCN 103 (138)
T ss_dssp TSCEEEECSCHHHHHHHHHHHHHH---TCEEEEECTTCCSC-------CCTTSSCEEEEESSSSCSSSC-CCBSEEEECS
T ss_pred CCCEEEEeCcHHHHHHHHHHHhcc---ccchhhhhccchhh-------hhhhhhcceeehhHHHHhccc-cccceEEEEE
Confidence 679999999999999999999886 88999999999865 478899999999999999999 9999999965
Q ss_pred ----CCCChhhHHhhhcccccCCCCceEEEEeCcccH
Q psy15524 737 ----APSSSTDYVHRVGRTARVGHEGSSLLFLIPSEV 769 (930)
Q Consensus 737 ----~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~e~ 769 (930)
+|.++++|+||+||||| |++|. +.|++|.|+
T Consensus 104 ~~~~~P~~~~~y~qr~GR~gR-g~~G~-~~~i~~~er 138 (138)
T d1jr6a_ 104 TSDGKPQDAVSRTQRRGRTGR-GKPGI-YRFVAPGER 138 (138)
T ss_dssp EETTEECCHHHHHHHHTTBCS-SSCEE-EEECCSSCC
T ss_pred ecCCCCCCHHHHHhHhccccC-CCCcE-EEEEcCCCC
Confidence 69999999999999999 99995 778888763
|
| >d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Transcription-repair coupling factor, TRCF species: Escherichia coli [TaxId: 562]
Probab=99.76 E-value=2.1e-18 Score=171.39 Aligned_cols=167 Identities=22% Similarity=0.253 Sum_probs=130.1
Q ss_pred cCcHHHHHHHHHhhc----C--CcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHH
Q psy15524 5 QVTTVQQLSIQPILD----G--GDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFT 78 (930)
Q Consensus 5 ~l~~~Q~~ai~~~~~----g--~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~ 78 (930)
.+|+-|..++..+.+ + .+.|++|.||||||.+|+.+++..+.. |.++++++||..|+.|.+++|+
T Consensus 55 ~lt~~Q~~~~~~i~~~~~~~~~~~~LL~GdvGsGKT~V~~~a~~~~~~~---------g~qv~~l~Pt~~La~Q~~~~~~ 125 (233)
T d2eyqa3 55 ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDN---------HKQVAVLVPTTLLAQQHYDNFR 125 (233)
T ss_dssp CCCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHTT---------TCEEEEECSSHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHhccCccCeEEEcCCCCCcHHHHHHHHHHHHHc---------CCceEEEccHHHhHHHHHHHHH
Confidence 589999999988753 2 378999999999999999999988844 7789999999999999999999
Q ss_pred HHhhhcCCceeEEeeCCCchHHHH----HHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCcHHHH
Q psy15524 79 KLCKSFTWIVPSWLTGGEKMKSEK----ARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDI 154 (930)
Q Consensus 79 ~~~~~~~~~~~~~~~g~~~~~~~~----~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~~~~~ 154 (930)
+++..++ +.+..+++.....+.. ....+.++|+|||--.+ . ..+.++++++|||||-|... +.+.
T Consensus 126 ~~~~~~~-~~v~~l~~~~~~~~~~~~~~~~~~g~~~iviGths~l----~--~~~~f~~LgLiIiDEeH~fg---~kQ~- 194 (233)
T d2eyqa3 126 DRFANWP-VRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLL----Q--SDVKFKDLGLLIVDEEHRFG---VRHK- 194 (233)
T ss_dssp HHSTTTT-CCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHH----H--SCCCCSSEEEEEEESGGGSC---HHHH-
T ss_pred HHHhhCC-CEEEeccCcccchhHHHHHHHHhCCCCCEEEeehhhh----c--cCCccccccceeeechhhhh---hHHH-
Confidence 9988776 6777777777654432 23345589999995333 2 34568999999999999643 3321
Q ss_pred HHHHHHHhhcCCCceEEEEEeecCCCccccccccccccccc
Q psy15524 155 AEFLEILKKQKPQFQSILLSATLTPATCWCKHTETLKFSKV 195 (930)
Q Consensus 155 ~~i~~~l~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~ 195 (930)
+.++...+++.++++||||.+++.....++.+.++.+
T Consensus 195 ----~~l~~~~~~~~~l~~SATPiprtl~~~~~g~~~~s~i 231 (233)
T d2eyqa3 195 ----ERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSII 231 (233)
T ss_dssp ----HHHHHHHTTSEEEEEESSCCCHHHHHHHTTTSEEEEC
T ss_pred ----HHHHhhCCCCCEEEEecchhHHHHHHHHHhccceeee
Confidence 2233445678999999999999988877777666654
|
| >d2p6ra4 c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Hel308 helicase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.76 E-value=1.1e-18 Score=171.90 Aligned_cols=112 Identities=26% Similarity=0.405 Sum_probs=96.8
Q ss_pred CceEEEEecchhhHHHHHHHHhhhc-----------------------------CCCceEEEecCCCCHHHHHHHHHHhh
Q psy15524 657 ESKMLVFMATQDMADYHTELLSTVL-----------------------------GENIAFFKLHGSMSQSERTEVFKTFR 707 (930)
Q Consensus 657 ~~k~iVF~~s~~~~~~~~~~l~~~~-----------------------------~~~~~~~~lhg~~~~~~R~~v~~~F~ 707 (930)
++++||||+|++.|+.++..|.... ..|+.+ +||+|++.+|..+++.|+
T Consensus 40 ~~~~LVF~~sRk~~~~~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~GIa~--hh~~l~~~~r~~ie~~f~ 117 (201)
T d2p6ra4 40 NGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAF--HHAGLLNGQRRVVEDAFR 117 (201)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCE--ECTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEeCCHHHHHHHHHHHHHHHHhhhchhHHHHHHHHhhhhhhhHHHHHHHhccHHH--HHHHhhhhhHHHHHHHHh
Confidence 6799999999999988776665432 124444 599999999999999999
Q ss_pred cCCCcEEEeccccccccCCCCccEEEE-------ecCCCChhhHHhhhcccccCCC--CceEEEEeCcccHH
Q psy15524 708 SVKSGVLICTDVAARGLDLPLVDWIVQ-------YTAPSSSTDYVHRVGRTARVGH--EGSSLLFLIPSEVK 770 (930)
Q Consensus 708 ~~~~~vLv~T~~~~~GlDip~v~~VI~-------~~~p~s~~~y~qr~GRagR~g~--~g~~~~~~~~~e~~ 770 (930)
+|.++|||||+++++|+|+|++++||+ ++.|.+..+|+||+|||||.|. .|.+++++.+.+.+
T Consensus 118 ~g~i~vlvaT~~l~~Gin~p~~~vvi~~~~~~d~~~~~~~~~~~~q~~GRAGR~g~~~~G~~~l~~~~~~~~ 189 (201)
T d2p6ra4 118 RGNIKVVVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAGRPGMDERGEAIIIVGKRDRE 189 (201)
T ss_dssp TTSCCEEEECSTTTSSSCCCBSEEEECCSEEESSSEEECCHHHHHHHHTTBSCTTTCSCEEEEEECCGGGHH
T ss_pred CCCceEEEechHHHhhcCCCCceEEEecceeccCCcCCCCHHHHHHHhcccCCCCCCCeeEEEEEeCCCChH
Confidence 999999999999999999999999997 6778899999999999999985 68888888877665
|
| >d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase PF2015 species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.75 E-value=1.2e-18 Score=183.78 Aligned_cols=127 Identities=27% Similarity=0.382 Sum_probs=105.9
Q ss_pred hhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCCceEEEecC--------CCCHHHHHHHHHHhh
Q psy15524 636 LRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHG--------SMSQSERTEVFKTFR 707 (930)
Q Consensus 636 ~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg--------~~~~~~R~~v~~~F~ 707 (930)
.|+..+...|....... .+.++||||++++.++.+++.|.+. ++.+..+|| +|++.+|..+++.|+
T Consensus 143 pK~~~l~~~l~~~~~~~---~~~k~iiF~~~~~~~~~~~~~L~~~---~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~F~ 216 (286)
T d1wp9a2 143 PKMDKLKEIIREQLQRK---QNSKIIVFTNYRETAKKIVNELVKD---GIKAKRFVGQASKENDRGLSQREQKLILDEFA 216 (286)
T ss_dssp HHHHHHHHHHHHHHHHC---TTCCEEEECSCHHHHHHHHHHHHHT---TCCEEEECCSSCC-------CCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhC---CCCcEEEEeCcHHhHHHHHHHHHHc---CCceEEeeccccccccchhchHHHHHHHHHHH
Confidence 46666666666543322 2679999999999999999999874 666666655 677789999999999
Q ss_pred cCCCcEEEeccccccccCCCCccEEEEecCCCChhhHHhhhcccccCCCCceEEEEeCcccH
Q psy15524 708 SVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPSEV 769 (930)
Q Consensus 708 ~~~~~vLv~T~~~~~GlDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~e~ 769 (930)
+|+.+|||||+++++|+|+|++++||+||+|.++..|+||+||+||.+ +|.++.|+++...
T Consensus 217 ~g~~~vLv~T~~~~~Gld~~~~~~Vi~~d~~~~~~~~~Qr~GR~gR~~-~~~~~~l~~~~~~ 277 (286)
T d1wp9a2 217 RGEFNVLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRHM-PGRVIILMAKGTR 277 (286)
T ss_dssp HTSCSEEEECGGGGGGGGSTTCCEEEESSCCHHHHHHHHHHTTSCSCC-CSEEEEEEETTSH
T ss_pred cCCCcEEEEccceeccccCCCCCEEEEeCCCCCHHHHHHHHHhCCCCC-CCEEEEEEeCCCH
Confidence 999999999999999999999999999999999999999999999965 7888888887643
|
| >d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecG helicase domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.74 E-value=3.3e-18 Score=173.33 Aligned_cols=169 Identities=21% Similarity=0.313 Sum_probs=131.5
Q ss_pred cCcHHHHHHHHHhhc----C--CcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHH
Q psy15524 5 QVTTVQQLSIQPILD----G--GDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFT 78 (930)
Q Consensus 5 ~l~~~Q~~ai~~~~~----g--~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~ 78 (930)
+||+.|++|+..+.+ + .+.|++|.||||||.+|+.+++..+.. |.++++++||..|+.|.++.++
T Consensus 83 eLT~~Q~~ai~ei~~d~~~~~~m~rLL~GdvGSGKT~Va~~a~~~~~~~---------g~q~~~m~Pt~~La~Qh~~~~~ 153 (264)
T d1gm5a3 83 KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEA---------GFQTAFMVPTSILAIQHYRRTV 153 (264)
T ss_dssp CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHH---------TSCEEEECSCHHHHHHHHHHHH
T ss_pred cCCchHHHHHHHHHHHhhccCcceeeeeccccccccHHHHHHHHHHHhc---------ccceeEEeehHhhhHHHHHHHH
Confidence 589999999999864 2 478999999999999999999988866 6679999999999999999999
Q ss_pred HHhhhcCCceeEEeeCCCchHHHHH----HhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCcHHHH
Q psy15524 79 KLCKSFTWIVPSWLTGGEKMKSEKA----RIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDI 154 (930)
Q Consensus 79 ~~~~~~~~~~~~~~~g~~~~~~~~~----~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~~~~~ 154 (930)
+++..++ +.+..+.|+....+... ...+.++|+|||-.-+. ..+.++++++|||||-|...-.+.
T Consensus 154 ~~f~~~~-~~v~~l~~~~~~~~r~~~~~~~~~g~~~iiIGThsl~~------~~~~f~~LglviiDEqH~fgv~Qr---- 222 (264)
T d1gm5a3 154 ESFSKFN-IHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQ------EDVHFKNLGLVIIDEQHRFGVKQR---- 222 (264)
T ss_dssp HHHTCSS-CCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHH------HCCCCSCCCEEEEESCCCC---------
T ss_pred Hhhhhcc-ccceeeccccchHHHHHHHHHHHCCCCCEEEeehHHhc------CCCCccccceeeeccccccchhhH----
Confidence 9998766 66777777776543322 22346999999964332 234578999999999998753332
Q ss_pred HHHHHHHhhcCCCceEEEEEeecCCCccccccccccccccccc
Q psy15524 155 AEFLEILKKQKPQFQSILLSATLTPATCWCKHTETLKFSKVEH 197 (930)
Q Consensus 155 ~~i~~~l~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~ 197 (930)
..+.....+++++++||||.+++.....++.+.++.+++
T Consensus 223 ----~~l~~~~~~~~~l~~SATPiprtl~~~~~g~~~~s~i~e 261 (264)
T d1gm5a3 223 ----EALMNKGKMVDTLVMSATPIPRSMALAFYGDLDVTVIDE 261 (264)
T ss_dssp ----CCCCSSSSCCCEEEEESSCCCHHHHHHHTCCSSCEEECC
T ss_pred ----HHHHHhCcCCCEEEEECCCCHHHHHHHHcCCCCeEeeCC
Confidence 123445567899999999999998888888888777654
|
| >d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: Dengue virus helicase species: Dengue virus type 2 [TaxId: 11060]
Probab=99.73 E-value=1.2e-18 Score=186.24 Aligned_cols=138 Identities=15% Similarity=0.168 Sum_probs=96.9
Q ss_pred hhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHHhhhcCCceeEEeeCCC
Q psy15524 17 ILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGE 96 (930)
Q Consensus 17 ~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~ 96 (930)
+.+|+++++.||||||||++|+.+++...... +.++||++||++|+.|++++++++........
T Consensus 6 ~~~~~~~lv~~~TGsGKT~~~l~~~~~~~~~~--------~~~~lvi~Ptr~La~q~~~~l~~~~~~~~~~~-------- 69 (305)
T d2bmfa2 6 FRKKRLTIMDLHPGAGKTKRYLPAIVREAIKR--------GLRTLILAPTRVVAAEMEEALRGLPIRYQTPA-------- 69 (305)
T ss_dssp SSTTCEEEECCCTTSSTTTTHHHHHHHHHHHH--------TCCEEEEESSHHHHHHHHHHTTTSCCBCCC----------
T ss_pred hhcCCcEEEEECCCCCHHHHHHHHHHHHHHhc--------CCEEEEEccHHHHHHHHHHHHhcCCcceeeeE--------
Confidence 45789999999999999999988888766542 45699999999999999988766543221110
Q ss_pred chHHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCcHHHHHHHHHHHhhcCCCceEEEEEee
Q psy15524 97 KMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSAT 176 (930)
Q Consensus 97 ~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~~~~~~~i~~~l~~~~~~~~~i~lSAT 176 (930)
..........++++||+.+..++.. ...+.+++++||||+|++..+++. +..++..+.. .+..+++++|||
T Consensus 70 ----~~~~~~~~~~i~~~t~~~l~~~~~~--~~~~~~~~~vViDE~H~~~~~~~~--~~~~l~~~~~-~~~~~~v~~SAT 140 (305)
T d2bmfa2 70 ----IRAEHTGREIVDLMCHATFTMRLLS--PIRVPNYNLIIMDEAHFTDPASIA--ARGYISTRVE-MGEAAGIFMTAT 140 (305)
T ss_dssp ----------CCCSEEEEEHHHHHHHHTS--SSCCCCCSEEEEESTTCCSHHHHH--HHHHHHHHHH-HTSCEEEEECSS
T ss_pred ----EeecccCccccccCCcHHHHHHHhc--CccccceeEEEeeeeeecchhhHH--HHHHHHHhhc-cccceEEEeecC
Confidence 1112234568999999998877653 344688999999999999877642 2223333322 245688888888
Q ss_pred cCC
Q psy15524 177 LTP 179 (930)
Q Consensus 177 ~~~ 179 (930)
++.
T Consensus 141 ~~~ 143 (305)
T d2bmfa2 141 PPG 143 (305)
T ss_dssp CTT
T ss_pred CCc
Confidence 865
|
| >d1gm5a4 c.37.1.19 (A:550-755) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecG helicase domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.72 E-value=1.3e-18 Score=169.72 Aligned_cols=136 Identities=21% Similarity=0.277 Sum_probs=103.2
Q ss_pred hhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHH--------HHHHHhhhcCCCceEEEecCCCCHHHHHHHHHHhh
Q psy15524 636 LRLVALASFILGKCQNVNEDEESKMLVFMATQDMADY--------HTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFR 707 (930)
Q Consensus 636 ~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~--------~~~~l~~~~~~~~~~~~lhg~~~~~~R~~v~~~F~ 707 (930)
.+...+..++...... ++++.+.|+..+..+. .++.+.+.+.++..+..+||+|++++|+.++++|+
T Consensus 13 ~~~~~v~~~I~~el~~-----g~QvyvVcP~Ieese~~~~~~~~e~~~~l~~~~~p~~~v~~lHG~m~~~eke~~m~~F~ 87 (206)
T d1gm5a4 13 DRVNEVYEFVRQEVMR-----GGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFA 87 (206)
T ss_dssp STHHHHHHHHHHHTTT-----SCCBCCBCCCC--------CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHHHHHHHT
T ss_pred ccHHHHHHHHHHHHHc-----CCCEEEEEeeecccccccchhhHHHHHHHHHhcCCCCeEEEEeecccHHHHHHHHHHHH
Confidence 3455667777665432 6788888887655433 23334333334677778999999999999999999
Q ss_pred cCCCcEEEeccccccccCCCCccEEEEecCCC-ChhhHHhhhcccccCCCCceEEEEeCcccHHHHHHHH
Q psy15524 708 SVKSGVLICTDVAARGLDLPLVDWIVQYTAPS-SSTDYVHRVGRTARVGHEGSSLLFLIPSEVKLVEELQ 776 (930)
Q Consensus 708 ~~~~~vLv~T~~~~~GlDip~v~~VI~~~~p~-s~~~y~qr~GRagR~g~~g~~~~~~~~~e~~~~~~l~ 776 (930)
+|+++|||||+++++|||+|++++||++++|. ..+++.|+.||+||.|..|.|++++.+....-.++++
T Consensus 88 ~g~~~iLVaTtViE~GIDip~a~~iii~~a~~fglsqlhQlrGRvGR~~~~~~~~l~~~~~~~~~~~rl~ 157 (206)
T d1gm5a4 88 EGRYDILVSTTVIEVGIDVPRANVMVIENPERFGLAQLHQLRGRVGRGGQEAYCFLVVGDVGEEAMERLR 157 (206)
T ss_dssp TTSSSBCCCSSCCCSCSCCTTCCEEEBCSCSSSCTTHHHHHHHTSCCSSTTCEEECCCCSCCHHHHHHHH
T ss_pred CCCEEEEEEehhhhccccccCCcEEEEEccCCccHHHHHhhhhheeeccccceeEeeeccccccchhhhh
Confidence 99999999999999999999999999999997 5777777799999999999999999876655445554
|
| >d1gkub2 c.37.1.16 (B:251-498) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Helicase-like "domain" of reverse gyrase domain: Helicase-like "domain" of reverse gyrase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.71 E-value=1.5e-19 Score=185.96 Aligned_cols=123 Identities=20% Similarity=0.252 Sum_probs=104.9
Q ss_pred chhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHHHHHHHHHHhhcCCCcE
Q psy15524 634 PKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSVKSGV 713 (930)
Q Consensus 634 ~~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~v~~~F~~~~~~v 713 (930)
.+.++..|..++... +.++||||+|++.++.+++.|.. .+||+|++.+|..++++|++|+.+|
T Consensus 10 ~~~~~~~l~~~l~~~--------~~~~iif~~~~~~~~~l~~~l~~---------~~hg~~~~~~R~~~~~~f~~g~~~v 72 (248)
T d1gkub2 10 NDESISTLSSILEKL--------GTGGIIYARTGEEAEEIYESLKN---------KFRIGIVTATKKGDYEKFVEGEIDH 72 (248)
T ss_dssp SCCCTTTTHHHHTTS--------CSCEEEEESSHHHHHHHHHTTTT---------SSCEEECTTSSSHHHHHHHHTSCSE
T ss_pred CchHHHHHHHHHHHh--------CCCEEEEECCHHHHHHHHHHHHH---------hccCCCCHHHHHHHHHHHHhCCCeE
Confidence 456677777777642 56899999999999999998875 2699999999999999999999999
Q ss_pred EEec----cccccccCCCC-ccEEEEecCCCChhhHHhhhcccccCCCCceEEEEeCcccHHHHHHHHh
Q psy15524 714 LICT----DVAARGLDLPL-VDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPSEVKLVEELQN 777 (930)
Q Consensus 714 Lv~T----~~~~~GlDip~-v~~VI~~~~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~e~~~~~~l~~ 777 (930)
|||| ++++||||+|+ |++|||||+|. |.||+||+||.|+.|.+++++.+.+....+.+..
T Consensus 73 LVaT~a~~~v~~rGlDip~~v~~VI~~d~P~----~~~r~gR~~R~g~~~~~~~~~~~~~~~~~~~l~~ 137 (248)
T d1gkub2 73 LIGTAHYYGTLVRGLDLPERIRFAVFVGCPS----FRVTIEDIDSLSPQMVKLLAYLYRNVDEIERLLP 137 (248)
T ss_dssp EEEECC------CCSCCTTTCCEEEEESCCE----EEEECSCGGGSCHHHHHHHHTTTSCHHHHHTTCT
T ss_pred EEEeccccchhhhccCccccccEEEEeCCCc----chhhhhhhhccCcceEeeeeccHhhHHHHHHHHH
Confidence 9999 88999999996 99999999994 9999999999999999999999888877766544
|
| >d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Transcription-repair coupling factor, TRCF species: Escherichia coli [TaxId: 562]
Probab=99.67 E-value=1.3e-15 Score=150.88 Aligned_cols=174 Identities=20% Similarity=0.216 Sum_probs=127.3
Q ss_pred CHHHHHHHHhcCCCCCCCHHHHHhHHhhhc----C--CcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEE
Q psy15524 399 HPFMKKNLNEGMNITQVTTVQQLSIQPILD----G--GDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVII 472 (930)
Q Consensus 399 ~~~~~~~l~~~~~~~~~~~iQ~~~i~~il~----~--~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil 472 (930)
+....+.+.+.+.| .+|+-|.+++..+.+ + .+.+++|.||||||.+|+.+++..+.. |.+++++
T Consensus 41 ~~~~~~~~~~~lP~-~lt~~Q~~~~~~i~~~~~~~~~~~~LL~GdvGsGKT~V~~~a~~~~~~~---------g~qv~~l 110 (233)
T d2eyqa3 41 DREQYQLFCDSFPF-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDN---------HKQVAVL 110 (233)
T ss_dssp CHHHHHHHHHTCCS-CCCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHTT---------TCEEEEE
T ss_pred CHHHHHhhhhcccc-ccchhHHHHHHHHHHHHhccCccCeEEEcCCCCCcHHHHHHHHHHHHHc---------CCceEEE
Confidence 34555566555555 789999999988764 2 368999999999999999999988754 8899999
Q ss_pred ccCHHHHHHHHHHHHHhhccCCCcceEEEeCCCchHH---HHHHHhc-CCcEEEECchhHHHhhhccCCcccccceEEEE
Q psy15524 473 LPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKS---EKARIRK-GISILVATPGRLLDHCKHTETLKFSKVEHLVL 548 (930)
Q Consensus 473 ~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~---~~~~~~~-~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVl 548 (930)
+||..|+.|.++.+++++..++. .+..++|+..... .+..+.. ..+|+|+|-..+. ..+.++++.++|+
T Consensus 111 ~Pt~~La~Q~~~~~~~~~~~~~~-~v~~l~~~~~~~~~~~~~~~~~~g~~~iviGths~l~------~~~~f~~LgLiIi 183 (233)
T d2eyqa3 111 VPTTLLAQQHYDNFRDRFANWPV-RIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQ------SDVKFKDLGLLIV 183 (233)
T ss_dssp CSSHHHHHHHHHHHHHHSTTTTC-CEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHH------SCCCCSSEEEEEE
T ss_pred ccHHHhHHHHHHHHHHHHhhCCC-EEEeccCcccchhHHHHHHHHhCCCCCEEEeehhhhc------cCCccccccceee
Confidence 99999999999999999887664 4555666655433 2334444 4799999965443 3456789999999
Q ss_pred ecchhhhhcCcHHHHHHHHHHHhhcCccceEEEEccccCHHHHHHHhhh
Q psy15524 549 DEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMT 597 (930)
Q Consensus 549 DEah~l~~~g~~~~l~~i~~~l~~~~~~~q~vl~SAT~~~~~~~l~~~~ 597 (930)
||-|+.. +... +.+... ..+..++++|||+.+....++...
T Consensus 184 DEeH~fg---~kQ~-~~l~~~----~~~~~~l~~SATPiprtl~~~~~g 224 (233)
T d2eyqa3 184 DEEHRFG---VRHK-ERIKAM----RANVDILTLTATPIPRTLNMAMSG 224 (233)
T ss_dssp ESGGGSC---HHHH-HHHHHH----HTTSEEEEEESSCCCHHHHHHHTT
T ss_pred echhhhh---hHHH-HHHHhh----CCCCCEEEEecchhHHHHHHHHHh
Confidence 9999654 3321 222222 236789999999988766555443
|
| >d1a1va2 c.37.1.14 (A:326-624) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Probab=99.66 E-value=1.7e-17 Score=166.51 Aligned_cols=106 Identities=19% Similarity=0.160 Sum_probs=93.4
Q ss_pred CceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHHHH----------HHHHHHhhcCCCcEEEecccccc---c
Q psy15524 657 ESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSER----------TEVFKTFRSVKSGVLICTDVAAR---G 723 (930)
Q Consensus 657 ~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R----------~~v~~~F~~~~~~vLv~T~~~~~---G 723 (930)
++++||||+|++.++.++..|++. |+.+..+||+|+++.| ..+++.|..|+.+++|+|+++++ |
T Consensus 36 ggk~LVFcnSR~~aE~La~~L~~~---Gi~a~~~Hgglsq~~R~~~gd~~i~~~~aLe~f~~G~~dvVVaT~~~a~g~~g 112 (299)
T d1a1va2 36 GGRHLIFCHSKKKCDELAAKLVAL---GINAVAYYRGLDVSVIPTSGDVVVVATDALMTGFTGDFDSVIDCNTCVTQTVD 112 (299)
T ss_dssp SSEEEEECSSHHHHHHHHHHHHHT---TCCEEEECTTSCGGGSCSSSSEEEEECTTC---CCCCBSEEEECCEEEEEEEE
T ss_pred CCCEEEECCcHHHHHHHHHHHHHC---CCCEEEEeCCchHHHHHhccchHHHHHHHHHHHhcCCCcEEEEEeehhccCCC
Confidence 679999999999999999999875 8889999999999887 56788999999999999999999 6
Q ss_pred cCCCCccEEEEecCCCChhhHHhhhcccccCCCCceEEEEeCc
Q psy15524 724 LDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIP 766 (930)
Q Consensus 724 lDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~g~~~~~~~~ 766 (930)
+|++.+.+||+++.|.|.++|+||+||||| |++|...+++..
T Consensus 113 iDid~V~~VI~~d~P~SvesyIQRiGRTGR-Gr~G~~~~l~~~ 154 (299)
T d1a1va2 113 FSLDPTFTIETTTLPQDAVSRTQRRGRTGR-GKPGIYRFVAPG 154 (299)
T ss_dssp CCCSSSCEEEEEEEECBHHHHHHHHTTBCS-SSCEEEEESCSC
T ss_pred CCCCcceEEEeCCCCCCHHHHHhhccccCC-CCCceEEEEecC
Confidence 778888899999999999999999999999 999988766554
|
| >d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecG helicase domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.65 E-value=8.2e-16 Score=155.51 Aligned_cols=172 Identities=22% Similarity=0.319 Sum_probs=125.9
Q ss_pred HHHHHHHhcCCCCCCCHHHHHhHHhhhc----C--CcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEcc
Q psy15524 401 FMKKNLNEGMNITQVTTVQQLSIQPILD----G--GDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILP 474 (930)
Q Consensus 401 ~~~~~l~~~~~~~~~~~iQ~~~i~~il~----~--~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~P 474 (930)
.+.+.+.+.+.| ++|+-|.+|+..+.. + .+.+++|.||||||.+|+..++..+.. |.++++++|
T Consensus 71 ~l~~~f~~~LPF-eLT~~Q~~ai~ei~~d~~~~~~m~rLL~GdvGSGKT~Va~~a~~~~~~~---------g~q~~~m~P 140 (264)
T d1gm5a3 71 KLAEEFIKSLPF-KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEA---------GFQTAFMVP 140 (264)
T ss_dssp HHHHHHHHHSSS-CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHH---------TSCEEEECS
T ss_pred HHHHHHHhhccc-cCCchHHHHHHHHHHHhhccCcceeeeeccccccccHHHHHHHHHHHhc---------ccceeEEee
Confidence 344555555676 799999999999864 2 358999999999999999999988876 788999999
Q ss_pred CHHHHHHHHHHHHHhhccCCCcceEEEeCCCchHH---HHHHHhc-CCcEEEECchhHHHhhhccCCcccccceEEEEec
Q psy15524 475 TRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKS---EKARIRK-GISILVATPGRLLDHCKHTETLKFSKVEHLVLDE 550 (930)
Q Consensus 475 treLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~---~~~~~~~-~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlDE 550 (930)
|..||.|.++.+++++..++. .+..++|+..... .+..+.. .++|+|||..-+. ..+.+++++++|+||
T Consensus 141 t~~La~Qh~~~~~~~f~~~~~-~v~~l~~~~~~~~r~~~~~~~~~g~~~iiIGThsl~~------~~~~f~~LglviiDE 213 (264)
T d1gm5a3 141 TSILAIQHYRRTVESFSKFNI-HVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQ------EDVHFKNLGLVIIDE 213 (264)
T ss_dssp CHHHHHHHHHHHHHHHTCSSC-CEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHH------HCCCCSCCCEEEEES
T ss_pred hHhhhHHHHHHHHHhhhhccc-cceeeccccchHHHHHHHHHHHCCCCCEEEeehHHhc------CCCCccccceeeecc
Confidence 999999999999999987654 4566677665433 2333433 4899999965443 234567899999999
Q ss_pred chhhhhcCcHHHHHHHHHHHhhcCccceEEEEccccCHHHHHHHhhh
Q psy15524 551 ADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMT 597 (930)
Q Consensus 551 ah~l~~~g~~~~l~~i~~~l~~~~~~~q~vl~SAT~~~~~~~l~~~~ 597 (930)
-|+..-... ..+........++++|||+.+....++...
T Consensus 214 qH~fgv~Qr--------~~l~~~~~~~~~l~~SATPiprtl~~~~~g 252 (264)
T d1gm5a3 214 QHRFGVKQR--------EALMNKGKMVDTLVMSATPIPRSMALAFYG 252 (264)
T ss_dssp CCCC-------------CCCCSSSSCCCEEEEESSCCCHHHHHHHTC
T ss_pred ccccchhhH--------HHHHHhCcCCCEEEEECCCCHHHHHHHHcC
Confidence 998753321 122333446789999999988665555433
|
| >d1rifa_ c.37.1.23 (A:) DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: DNA helicase UvsW domain: DNA helicase UvsW species: Bacteriophage T4 [TaxId: 10665]
Probab=99.62 E-value=6e-16 Score=160.91 Aligned_cols=152 Identities=18% Similarity=0.155 Sum_probs=106.3
Q ss_pred cCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHHhhhc
Q psy15524 5 QVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSF 84 (930)
Q Consensus 5 ~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~ 84 (930)
.|+++|++|+..++.+++.++.+|||+|||++....+...... ...++|||+|+++|+.|+.+.+.+++...
T Consensus 113 ~~rdyQ~~av~~~l~~~~~il~~pTGsGKT~i~~~i~~~~~~~--------~~~k~Liivp~~~Lv~Q~~~~f~~~~~~~ 184 (282)
T d1rifa_ 113 EPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLEN--------YEGKILIIVPTTALTTQMADDFVDYRLFS 184 (282)
T ss_dssp CCCHHHHHHHHHHHHHSEEEECCCTTSCHHHHHHHHHHHHHHH--------CSSEEEEECSSHHHHHHHHHHHHHHTSCC
T ss_pred ccchHHHHHHHHHHhcCCceeEEEcccCccHHHHHHHHHhhhc--------ccceEEEEEcCchhHHHHHHHHHHhhccc
Confidence 5899999999999998899999999999999876554333322 23469999999999999999999886432
Q ss_pred CCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCcHHHHHHHHHHHhhc
Q psy15524 85 TWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQ 164 (930)
Q Consensus 85 ~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~~~~~~~i~~~l~~~ 164 (930)
. ..+....+|..... ......+++++|++.+.... ...++++++||+||||++.. ..+..++..+.
T Consensus 185 ~-~~~~~~~~g~~~~~---~~~~~~~i~i~t~qs~~~~~----~~~~~~f~~VIvDEaH~~~a----~~~~~il~~~~-- 250 (282)
T d1rifa_ 185 H-AMIKKIGGGASKDD---KYKNDAPVVVGTWQTVVKQP----KEWFSQFGMMMNDECHLATG----KSISSIISGLN-- 250 (282)
T ss_dssp G-GGEEECSTTCSSTT---CCCTTCSEEEECHHHHTTSC----GGGGGGEEEEEEETGGGCCH----HHHHHHTTTCT--
T ss_pred c-ccceeecceecccc---cccccceEEEEeeehhhhhc----ccccCCCCEEEEECCCCCCc----hhHHHHHHhcc--
Confidence 2 33344444433221 11234689999998764432 22357899999999998753 33444443332
Q ss_pred CCCceEEEEEeecCC
Q psy15524 165 KPQFQSILLSATLTP 179 (930)
Q Consensus 165 ~~~~~~i~lSAT~~~ 179 (930)
+....+|||||++.
T Consensus 251 -~~~~rlGlTaT~~~ 264 (282)
T d1rifa_ 251 -NCMFKFGLSGSLRD 264 (282)
T ss_dssp -TCCEEEEECSSCCT
T ss_pred -CCCeEEEEEeecCC
Confidence 22246999999865
|
| >d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DNA repair protein RAD25 species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.62 E-value=1.1e-15 Score=151.77 Aligned_cols=136 Identities=21% Similarity=0.175 Sum_probs=100.3
Q ss_pred cCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHHhhhc
Q psy15524 5 QVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSF 84 (930)
Q Consensus 5 ~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~ 84 (930)
.|+++|++++..++++++.++++|||+|||++++..+. .+ +.++||++|+++|+.|+.+.++.++.
T Consensus 70 ~Lr~yQ~eav~~~~~~~~~ll~~~tG~GKT~~a~~~~~-~~-----------~~~~Liv~p~~~L~~q~~~~~~~~~~-- 135 (206)
T d2fz4a1 70 SLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAIN-EL-----------STPTLIVVPTLALAEQWKERLGIFGE-- 135 (206)
T ss_dssp CCCHHHHHHHHHHTTTSEEEEEESSSTTHHHHHHHHHH-HS-----------CSCEEEEESSHHHHHHHHHHHGGGCG--
T ss_pred CcCHHHHHHHHHHHhCCCcEEEeCCCCCceehHHhHHH-Hh-----------cCceeEEEcccchHHHHHHHHHhhcc--
Confidence 59999999999999998999999999999998665442 22 23499999999999999999877653
Q ss_pred CCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCcHHHHHHHHHHHhhc
Q psy15524 85 TWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQ 164 (930)
Q Consensus 85 ~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~~~~~~~i~~~l~~~ 164 (930)
.......|+.. ...+|+++|.+.+...... ..+++++||+||||++....+ ..++..
T Consensus 136 --~~~~~~~~~~~---------~~~~i~i~t~~~~~~~~~~----~~~~~~lvIiDEaH~~~a~~~----~~i~~~---- 192 (206)
T d2fz4a1 136 --EYVGEFSGRIK---------ELKPLTVSTYDSAYVNAEK----LGNRFMLLIFDEVHHLPAESY----VQIAQM---- 192 (206)
T ss_dssp --GGEEEESSSCB---------CCCSEEEEEHHHHHHTHHH----HTTTCSEEEEECSSCCCTTTH----HHHHHT----
T ss_pred --cchhhcccccc---------cccccccceehhhhhhhHh----hCCcCCEEEEECCeeCCcHHH----HHHHhc----
Confidence 23344444332 3457999999988765442 245789999999999864433 333322
Q ss_pred CCCceEEEEEeec
Q psy15524 165 KPQFQSILLSATL 177 (930)
Q Consensus 165 ~~~~~~i~lSAT~ 177 (930)
.+...++|||||+
T Consensus 193 ~~~~~~lgLTATl 205 (206)
T d2fz4a1 193 SIAPFRLGLTATF 205 (206)
T ss_dssp CCCSEEEEEEESC
T ss_pred cCCCcEEEEecCC
Confidence 2334689999997
|
| >d2eyqa5 c.37.1.19 (A:779-989) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Transcription-repair coupling factor, TRCF species: Escherichia coli [TaxId: 562]
Probab=99.62 E-value=3e-15 Score=143.55 Aligned_cols=121 Identities=20% Similarity=0.295 Sum_probs=107.6
Q ss_pred HHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHHHHHHHHHHhhcCCCcEEEecccc
Q psy15524 641 LASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVA 720 (930)
Q Consensus 641 l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~v~~~F~~~~~~vLv~T~~~ 720 (930)
+...+...+. .++++.+.|+..+..+..++.+.+.++ +..+..+||.|++++++.++.+|.+|+.+|||||.+.
T Consensus 20 i~~~I~~El~-----rGgQvy~V~p~I~~~e~~~~~l~~~~p-~~~i~~lHGkm~~~eke~im~~F~~g~~~ILv~TtvI 93 (211)
T d2eyqa5 20 VREAILREIL-----RGGQVYYLYNDVENIQKAAERLAELVP-EARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTII 93 (211)
T ss_dssp HHHHHHHHHT-----TTCEEEEECCCSSCHHHHHHHHHHHCT-TSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESSTT
T ss_pred HHHHHHHHHH-----cCCeEEEEEcCccchhhHHHHHHHhCC-ceEEEEEEeccCHHHHHHHHHHHHcCCcceEEEehhh
Confidence 4455554333 278999999999999999999998876 6888899999999999999999999999999999999
Q ss_pred ccccCCCCccEEEEecCCC-ChhhHHhhhcccccCCCCceEEEEeCcc
Q psy15524 721 ARGLDLPLVDWIVQYTAPS-SSTDYVHRVGRTARVGHEGSSLLFLIPS 767 (930)
Q Consensus 721 ~~GlDip~v~~VI~~~~p~-s~~~y~qr~GRagR~g~~g~~~~~~~~~ 767 (930)
+.|+|+|+++++|..+.+. ..+++-|..||+||.+..|.|+++..+.
T Consensus 94 EvGiDvpnA~~iiI~~a~rfGLaQLhQLRGRVGR~~~~s~c~l~~~~~ 141 (211)
T d2eyqa5 94 ETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHP 141 (211)
T ss_dssp GGGSCCTTEEEEEETTTTSSCHHHHHHHHTTCCBTTBCEEEEEEECCG
T ss_pred hhccCCCCCcEEEEecchhccccccccccceeeecCccceEEEEecCC
Confidence 9999999999999999875 8889999999999999999999998653
|
| >d2fwra1 c.37.1.19 (A:257-456) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DNA repair protein RAD25 species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.61 E-value=2.1e-16 Score=156.65 Aligned_cols=109 Identities=19% Similarity=0.377 Sum_probs=95.3
Q ss_pred hhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHHHHHHHHHHhhcCCCcEE
Q psy15524 635 KLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSVKSGVL 714 (930)
Q Consensus 635 ~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~v~~~F~~~~~~vL 714 (930)
..|+..+..++..+ .+.++||||.+.+.++.+++.|. +..+||++++.+|..+++.|++|+.+||
T Consensus 78 ~~K~~~l~~ll~~~-------~~~k~lvf~~~~~~~~~l~~~l~--------~~~i~g~~~~~~R~~~l~~F~~~~~~vL 142 (200)
T d2fwra1 78 KNKIRKLREILERH-------RKDKIIIFTRHNELVYRISKVFL--------IPAITHRTSREEREEILEGFRTGRFRAI 142 (200)
T ss_dssp SHHHHHHHHHHHHT-------SSSCBCCBCSCHHHHHHHHHHTT--------CCBCCSSSCSHHHHTHHHHHHHSSCSBC
T ss_pred HHHHHHHHHHHHhC-------CCCcEEEEeCcHHHHHHHHhhcC--------cceeeCCCCHHHHHHHHHHhhcCCeeee
Confidence 35677777777653 26799999999999988877663 2246999999999999999999999999
Q ss_pred EeccccccccCCCCccEEEEecCCCChhhHHhhhcccccCCCCc
Q psy15524 715 ICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEG 758 (930)
Q Consensus 715 v~T~~~~~GlDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~g 758 (930)
|||+++++|+|+|.+++||.+++|+++..|+||+||++|.|+.+
T Consensus 143 v~~~~~~~Gidl~~~~~vi~~~~~~s~~~~~Q~iGR~~R~~~~k 186 (200)
T d2fwra1 143 VSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGRILRPSKGK 186 (200)
T ss_dssp BCSSCCCSSSCSCCBSEEEEECCSSCCHHHHHHHHHSBCCCTTT
T ss_pred eecchhhcccCCCCCCEEEEeCCCCCHHHHHHHHHhcCCCCCCC
Confidence 99999999999999999999999999999999999999998754
|
| >d1rifa_ c.37.1.23 (A:) DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: DNA helicase UvsW domain: DNA helicase UvsW species: Bacteriophage T4 [TaxId: 10665]
Probab=99.61 E-value=4.6e-16 Score=161.84 Aligned_cols=153 Identities=18% Similarity=0.161 Sum_probs=107.2
Q ss_pred CCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHHHHhhccC
Q psy15524 414 QVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSF 493 (930)
Q Consensus 414 ~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~ 493 (930)
.|+++|.+|+..++.++..++.+|||+|||++....+ ..+.. ..+.++|||+|+++|+.|+++.+.+++...
T Consensus 113 ~~rdyQ~~av~~~l~~~~~il~~pTGsGKT~i~~~i~-~~~~~-------~~~~k~Liivp~~~Lv~Q~~~~f~~~~~~~ 184 (282)
T d1rifa_ 113 EPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLA-RYYLE-------NYEGKILIIVPTTALTTQMADDFVDYRLFS 184 (282)
T ss_dssp CCCHHHHHHHHHHHHHSEEEECCCTTSCHHHHHHHHH-HHHHH-------HCSSEEEEECSSHHHHHHHHHHHHHHTSCC
T ss_pred ccchHHHHHHHHHHhcCCceeEEEcccCccHHHHHHH-HHhhh-------cccceEEEEEcCchhHHHHHHHHHHhhccc
Confidence 6999999999999999999999999999999865444 33332 124579999999999999999999886432
Q ss_pred CCcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhccCCcccccceEEEEecchhhhhcCcHHHHHHHHHHHhhc
Q psy15524 494 TWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQ 573 (930)
Q Consensus 494 ~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~l~~~g~~~~l~~i~~~l~~~ 573 (930)
...+..+.+|...... ......|+|+|+..+..... ..++++++||+||||++.. ..+..++..+.
T Consensus 185 -~~~~~~~~~g~~~~~~---~~~~~~i~i~t~qs~~~~~~----~~~~~f~~VIvDEaH~~~a----~~~~~il~~~~-- 250 (282)
T d1rifa_ 185 -HAMIKKIGGGASKDDK---YKNDAPVVVGTWQTVVKQPK----EWFSQFGMMMNDECHLATG----KSISSIISGLN-- 250 (282)
T ss_dssp -GGGEEECSTTCSSTTC---CCTTCSEEEECHHHHTTSCG----GGGGGEEEEEEETGGGCCH----HHHHHHTTTCT--
T ss_pred -cccceeecceeccccc---ccccceEEEEeeehhhhhcc----cccCCCCEEEEECCCCCCc----hhHHHHHHhcc--
Confidence 2334444555432211 12357899999877654322 2467899999999998753 33444443332
Q ss_pred CccceEEEEccccCHH
Q psy15524 574 KPQFQSILLSATLTPA 589 (930)
Q Consensus 574 ~~~~q~vl~SAT~~~~ 589 (930)
+..-.++||||+++.
T Consensus 251 -~~~~rlGlTaT~~~~ 265 (282)
T d1rifa_ 251 -NCMFKFGLSGSLRDG 265 (282)
T ss_dssp -TCCEEEEECSSCCTT
T ss_pred -CCCeEEEEEeecCCC
Confidence 223358999998653
|
| >d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DNA repair protein RAD25 species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.60 E-value=1.7e-15 Score=150.55 Aligned_cols=136 Identities=21% Similarity=0.177 Sum_probs=99.5
Q ss_pred CCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHHHHhhccC
Q psy15524 414 QVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSF 493 (930)
Q Consensus 414 ~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~ 493 (930)
.++++|.+++..+++++..++.+|||+|||++++..+. .+ +.++||++|+++|+.|+.+.+..+...
T Consensus 70 ~Lr~yQ~eav~~~~~~~~~ll~~~tG~GKT~~a~~~~~-~~-----------~~~~Liv~p~~~L~~q~~~~~~~~~~~- 136 (206)
T d2fz4a1 70 SLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAIN-EL-----------STPTLIVVPTLALAEQWKERLGIFGEE- 136 (206)
T ss_dssp CCCHHHHHHHHHHTTTSEEEEEESSSTTHHHHHHHHHH-HS-----------CSCEEEEESSHHHHHHHHHHHGGGCGG-
T ss_pred CcCHHHHHHHHHHHhCCCcEEEeCCCCCceehHHhHHH-Hh-----------cCceeEEEcccchHHHHHHHHHhhccc-
Confidence 68999999999999998999999999999998654332 11 346899999999999999999776432
Q ss_pred CCcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhccCCcccccceEEEEecchhhhhcCcHHHHHHHHHHHhhc
Q psy15524 494 TWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQ 573 (930)
Q Consensus 494 ~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~l~~~g~~~~l~~i~~~l~~~ 573 (930)
..+...|+.. ...+|+|+|...+..+... ..+++++||+||||++....+ ..++..+
T Consensus 137 ---~~~~~~~~~~---------~~~~i~i~t~~~~~~~~~~----~~~~~~lvIiDEaH~~~a~~~----~~i~~~~--- 193 (206)
T d2fz4a1 137 ---YVGEFSGRIK---------ELKPLTVSTYDSAYVNAEK----LGNRFMLLIFDEVHHLPAESY----VQIAQMS--- 193 (206)
T ss_dssp ---GEEEESSSCB---------CCCSEEEEEHHHHHHTHHH----HTTTCSEEEEECSSCCCTTTH----HHHHHTC---
T ss_pred ---chhhcccccc---------cccccccceehhhhhhhHh----hCCcCCEEEEECCeeCCcHHH----HHHHhcc---
Confidence 3344444432 3467999999887665443 235789999999999864433 3333322
Q ss_pred CccceEEEEcccc
Q psy15524 574 KPQFQSILLSATL 586 (930)
Q Consensus 574 ~~~~q~vl~SAT~ 586 (930)
.....++||||+
T Consensus 194 -~~~~~lgLTATl 205 (206)
T d2fz4a1 194 -IAPFRLGLTATF 205 (206)
T ss_dssp -CCSEEEEEEESC
T ss_pred -CCCcEEEEecCC
Confidence 244578999997
|
| >d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: YFV helicase domain species: Yellow fever virus [TaxId: 11089]
Probab=99.59 E-value=9.7e-16 Score=142.54 Aligned_cols=137 Identities=17% Similarity=0.178 Sum_probs=92.6
Q ss_pred hhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHHHHhhccCCCcceEEEeCCC
Q psy15524 426 ILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGE 505 (930)
Q Consensus 426 il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~ 505 (930)
+.+|+++++.||||||||++++..++..... .+.++++++|+++|+.|.++.+..... .......
T Consensus 4 l~~~~~~il~~~tGsGKT~~~~~~~~~~~~~--------~~~~vli~~p~~~l~~q~~~~~~~~~~-------~~~~~~~ 68 (140)
T d1yksa1 4 LKKGMTTVLDFHPGAGKTRRFLPQILAECAR--------RRLRTLVLAPTRVVLSEMKEAFHGLDV-------KFHTQAF 68 (140)
T ss_dssp TSTTCEEEECCCTTSSTTTTHHHHHHHHHHH--------TTCCEEEEESSHHHHHHHHHHTTTSCE-------EEESSCC
T ss_pred HHcCCcEEEEcCCCCChhHHHHHHHHHHhhh--------cCceeeeeecchhHHHHHHHHhhhhhh-------hhccccc
Confidence 3468899999999999999887777766654 367899999999999999887644321 1111111
Q ss_pred chHHHHHHHhcCCcEEEECchhHHHhhhccCCcccccceEEEEecchhhhhcCcHHHHHHHHHHHhhcCccceEEEEccc
Q psy15524 506 KMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSAT 585 (930)
Q Consensus 506 ~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~l~~~g~~~~l~~i~~~l~~~~~~~q~vl~SAT 585 (930)
.... .....+.+.|...+...... ...+.+++++|+||||.+...++. ...++..+.. .++.++++||||
T Consensus 69 ~~~~-----~~~~~~~~~~~~~l~~~~~~--~~~~~~~~lvIiDEaH~~~~~~~~--~~~~~~~~~~-~~~~~~l~lTAT 138 (140)
T d1yksa1 69 SAHG-----SGREVIDAMCHATLTYRMLE--PTRVVNWEVIIMDEAHFLDPASIA--ARGWAAHRAR-ANESATILMTAT 138 (140)
T ss_dssp CCCC-----CSSCCEEEEEHHHHHHHHTS--SSCCCCCSEEEETTTTCCSHHHHH--HHHHHHHHHH-TTSCEEEEECSS
T ss_pred cccc-----ccccchhhhhHHHHHHHHhc--cccccceeEEEEccccccChhhHH--HHHHHHHHhh-CCCCCEEEEEcC
Confidence 1000 12356788888777665443 455789999999999987554432 2223333333 247899999999
Q ss_pred cC
Q psy15524 586 LT 587 (930)
Q Consensus 586 ~~ 587 (930)
+|
T Consensus 139 Pp 140 (140)
T d1yksa1 139 PP 140 (140)
T ss_dssp CT
T ss_pred CC
Confidence 87
|
| >d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: YFV helicase domain species: Yellow fever virus [TaxId: 11089]
Probab=99.56 E-value=3.6e-15 Score=138.58 Aligned_cols=137 Identities=18% Similarity=0.152 Sum_probs=93.2
Q ss_pred hhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHHhhhcCCceeEEeeCCC
Q psy15524 17 ILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGE 96 (930)
Q Consensus 17 ~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~ 96 (930)
+..|+++++++|||+|||.+++..++..... .+.++++++|+++++.|+.+.+..... .. .....
T Consensus 4 l~~~~~~il~~~tGsGKT~~~~~~~~~~~~~--------~~~~vli~~p~~~l~~q~~~~~~~~~~-----~~--~~~~~ 68 (140)
T d1yksa1 4 LKKGMTTVLDFHPGAGKTRRFLPQILAECAR--------RRLRTLVLAPTRVVLSEMKEAFHGLDV-----KF--HTQAF 68 (140)
T ss_dssp TSTTCEEEECCCTTSSTTTTHHHHHHHHHHH--------TTCCEEEEESSHHHHHHHHHHTTTSCE-----EE--ESSCC
T ss_pred HHcCCcEEEEcCCCCChhHHHHHHHHHHhhh--------cCceeeeeecchhHHHHHHHHhhhhhh-----hh--ccccc
Confidence 3468999999999999999887777766654 245699999999999999887643321 11 11111
Q ss_pred chHHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCcHHHHHHHHHHHhhcCCCceEEEEEee
Q psy15524 97 KMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSAT 176 (930)
Q Consensus 97 ~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~~~~~~~i~~~l~~~~~~~~~i~lSAT 176 (930)
... ......+.+.|...+..... ....+.++++||+||||++..+++. .+.++..+.. .++.++++||||
T Consensus 69 ~~~-----~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~lvIiDEaH~~~~~~~~--~~~~~~~~~~-~~~~~~l~lTAT 138 (140)
T d1yksa1 69 SAH-----GSGREVIDAMCHATLTYRML--EPTRVVNWEVIIMDEAHFLDPASIA--ARGWAAHRAR-ANESATILMTAT 138 (140)
T ss_dssp CCC-----CCSSCCEEEEEHHHHHHHHT--SSSCCCCCSEEEETTTTCCSHHHHH--HHHHHHHHHH-TTSCEEEEECSS
T ss_pred ccc-----cccccchhhhhHHHHHHHHh--ccccccceeEEEEccccccChhhHH--HHHHHHHHhh-CCCCCEEEEEcC
Confidence 000 01235688888888766543 4456789999999999988554432 2333333333 356899999999
Q ss_pred cC
Q psy15524 177 LT 178 (930)
Q Consensus 177 ~~ 178 (930)
||
T Consensus 139 Pp 140 (140)
T d1yksa1 139 PP 140 (140)
T ss_dssp CT
T ss_pred CC
Confidence 96
|
| >d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Probab=99.54 E-value=1.3e-14 Score=133.91 Aligned_cols=129 Identities=19% Similarity=0.151 Sum_probs=87.8
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHHhhhcCCceeEEeeCCCchH
Q psy15524 20 GGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMK 99 (930)
Q Consensus 20 g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~ 99 (930)
.+..++.+|||||||.++...+. ..+.+++|++|+++|++|+.+.+.+..... .....++...
T Consensus 8 ~~~~ll~apTGsGKT~~~~~~~~------------~~~~~vli~~P~~~l~~q~~~~~~~~~~~~----~~~~~~~~~~- 70 (136)
T d1a1va1 8 FQVAHLHAPTGSGKSTKVPAAYA------------AQGYKVLVLNPSVAATLGFGAYMSKAHGVD----PNIRTGVRTI- 70 (136)
T ss_dssp CEEEEEECCTTSCTTTHHHHHHH------------TTTCCEEEEESCHHHHHHHHHHHHHHHSCC----CEEECSSCEE-
T ss_pred CCEEEEEeCCCCCHHHHHHHHHH------------HcCCcEEEEcChHHHHHHHHHHHHHHhhcc----cccccccccc-
Confidence 45689999999999986543322 125569999999999999999998876532 2222333221
Q ss_pred HHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCcHHHHHHHHHHHhhcCCCceEEEEEeec
Q psy15524 100 SEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATL 177 (930)
Q Consensus 100 ~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~~~~~~~i~~~l~~~~~~~~~i~lSAT~ 177 (930)
.....++++|.+....... ..++++++|||||+|++... ....+..+++.++ ..++..++++||||
T Consensus 71 ------~~~~~~~~~~~~~~~~~~~----~~~~~~~~vIiDE~H~~~~~-~~~~~~~~l~~~~-~~~~~~~l~~TATP 136 (136)
T d1a1va1 71 ------TTGSPITYSTYGKFLADGG----CSGGAYDIIICDECHSTDAT-SILGIGTVLDQAE-TAGARLVVLATATP 136 (136)
T ss_dssp ------CCCCSEEEEEHHHHHHTTG----GGGCCCSEEEEETTTCCSHH-HHHHHHHHHHHTT-TTTCSEEEEEESSC
T ss_pred ------ccccceEEEeeeeeccccc----hhhhcCCEEEEecccccCHH-HHHHHHHHHHHHH-HCCCCcEEEEeCCC
Confidence 1235689999887755432 34789999999999987432 1223444444443 35678999999997
|
| >d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Probab=99.54 E-value=1.3e-14 Score=133.88 Aligned_cols=129 Identities=19% Similarity=0.154 Sum_probs=89.0
Q ss_pred CCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHHHHhhccCCCcceEEEeCCCchH
Q psy15524 429 GGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMK 508 (930)
Q Consensus 429 ~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~ 508 (930)
.+..++.||||||||+.+...+ . ..+.+++|++|+++|+.|+.+.+.+.+... .+...++....
T Consensus 8 ~~~~ll~apTGsGKT~~~~~~~----~--------~~~~~vli~~P~~~l~~q~~~~~~~~~~~~----~~~~~~~~~~~ 71 (136)
T d1a1va1 8 FQVAHLHAPTGSGKSTKVPAAY----A--------AQGYKVLVLNPSVAATLGFGAYMSKAHGVD----PNIRTGVRTIT 71 (136)
T ss_dssp CEEEEEECCTTSCTTTHHHHHH----H--------TTTCCEEEEESCHHHHHHHHHHHHHHHSCC----CEEECSSCEEC
T ss_pred CCEEEEEeCCCCCHHHHHHHHH----H--------HcCCcEEEEcChHHHHHHHHHHHHHHhhcc----ccccccccccc
Confidence 3558999999999997643222 1 236789999999999999999998876532 23333443221
Q ss_pred HHHHHHhcCCcEEEECchhHHHhhhccCCcccccceEEEEecchhhhhcCcHHHHHHHHHHHhhcCccceEEEEcccc
Q psy15524 509 SEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATL 586 (930)
Q Consensus 509 ~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~l~~~g~~~~l~~i~~~l~~~~~~~q~vl~SAT~ 586 (930)
....++++|.+....... ..+++++++|+||+|.+... ....+..+++.+.. .+..+++++|||+
T Consensus 72 -------~~~~~~~~~~~~~~~~~~----~~~~~~~~vIiDE~H~~~~~-~~~~~~~~l~~~~~-~~~~~~l~~TATP 136 (136)
T d1a1va1 72 -------TGSPITYSTYGKFLADGG----CSGGAYDIIICDECHSTDAT-SILGIGTVLDQAET-AGARLVVLATATP 136 (136)
T ss_dssp -------CCCSEEEEEHHHHHHTTG----GGGCCCSEEEEETTTCCSHH-HHHHHHHHHHHTTT-TTCSEEEEEESSC
T ss_pred -------cccceEEEeeeeeccccc----hhhhcCCEEEEecccccCHH-HHHHHHHHHHHHHH-CCCCcEEEEeCCC
Confidence 235789999887765433 34788999999999976432 22334555555543 4577899999995
|
| >d1tf5a4 c.37.1.19 (A:396-570) Translocation ATPase SecA, nucleotide-binding domains {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Translocation ATPase SecA, nucleotide-binding domains species: Bacillus subtilis [TaxId: 1423]
Probab=99.35 E-value=1.7e-12 Score=119.93 Aligned_cols=129 Identities=20% Similarity=0.203 Sum_probs=104.4
Q ss_pred EEcCchhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHHHHHHHHHHhhcC
Q psy15524 630 IVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSV 709 (930)
Q Consensus 630 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~v~~~F~~~ 709 (930)
++.....|+.++...+...... +.|+||++.|.+.++.++.+|.+. ++....+++.....+-..+-++...|
T Consensus 12 vf~T~~eK~~AIi~eV~~~~~~-----grPVLIgT~SIe~SE~ls~~L~~~---gi~h~vLnAk~~~~Ea~II~~Ag~~g 83 (175)
T d1tf5a4 12 IYRTMEGKFKAVAEDVAQRYMT-----GQPVLVGTVAVETSELISKLLKNK---GIPHQVLNAKNHEREAQIIEEAGQKG 83 (175)
T ss_dssp EESSHHHHHHHHHHHHHHHHHH-----TCCEEEEESCHHHHHHHHHHHHTT---TCCCEEECSSCHHHHHHHHTTTTSTT
T ss_pred EEcCHHHHHHHHHHHHHHHHhc-----CCCEEEEeCcHHHHHHHHHHHHHc---CCCceeehhhhHHHHHHHHHhccCCC
Confidence 3456677888888887654332 789999999999999999999885 77788889987655544444444444
Q ss_pred CCcEEEeccccccccCCC---Ccc-----EEEEecCCCChhhHHhhhcccccCCCCceEEEEeCccc
Q psy15524 710 KSGVLICTDVAARGLDLP---LVD-----WIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPSE 768 (930)
Q Consensus 710 ~~~vLv~T~~~~~GlDip---~v~-----~VI~~~~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~e 768 (930)
.|.|||++++||.|+. .|. +||....|.|.....|..||+||.|.+|.+.+|++-++
T Consensus 84 --~VtIATNmAGRGtDikl~~~v~~~GGLhVI~t~~~~s~Rid~Ql~GR~gRQGdpGs~~~~~sleD 148 (175)
T d1tf5a4 84 --AVTIATNMAGRGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPGITQFYLSMED 148 (175)
T ss_dssp --CEEEEETTSSTTCCCCCCTTSGGGTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEETTS
T ss_pred --ceeehhhHHHcCCCccchHHHHhCCCcEEEEeccCcchhHHHHHhcchhhhCCCcccEEEEEcCH
Confidence 4999999999999994 232 89999999999999999999999999999999997544
|
| >d1z5za1 c.37.1.19 (A:663-906) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Helicase of the SNF2/Rad54 hamily species: Sulfolobus solfataricus [TaxId: 2287]
Probab=99.22 E-value=3.6e-11 Score=122.20 Aligned_cols=136 Identities=16% Similarity=0.238 Sum_probs=94.0
Q ss_pred hhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHHHHHHHHHHhhcCC-CcE
Q psy15524 635 KLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSVK-SGV 713 (930)
Q Consensus 635 ~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~v~~~F~~~~-~~v 713 (930)
..|+..+..++..... .+.++||||......+.+...+.... +..+..+||++++.+|..+++.|.++. ..+
T Consensus 68 S~K~~~l~~~l~~~~~-----~g~kviIFs~~~~~~~~l~~~l~~~~--~~~~~~i~G~~~~~~R~~~i~~F~~~~~~~v 140 (244)
T d1z5za1 68 SGKMIRTMEIIEEALD-----EGDKIAIFTQFVDMGKIIRNIIEKEL--NTEVPFLYGELSKKERDDIISKFQNNPSVKF 140 (244)
T ss_dssp CHHHHHHHHHHHHHHH-----TTCCEEEEESCHHHHHHHHHHHHHHH--CSCCCEECTTSCHHHHHHHHHHHHHCTTCCE
T ss_pred hhHHHHHHHHHHhhcc-----cccceEEEeeceehHHHHHHHHHhhc--cceEEEEecccchhccchhhhhhhccccchh
Confidence 4578888888876432 27799999999999998888886543 456667799999999999999998764 566
Q ss_pred EEe-ccccccccCCCCccEEEEecCCCChhhHHhhhcccccCCCCceE--EEEeCcc--cHHHHHHHHh
Q psy15524 714 LIC-TDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSS--LLFLIPS--EVKLVEELQN 777 (930)
Q Consensus 714 Lv~-T~~~~~GlDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~g~~--~~~~~~~--e~~~~~~l~~ 777 (930)
+++ |.+.+.|+|++.++.||.+++|+++..+.|++||+.|.|+...+ +.++... |...++.+..
T Consensus 141 ll~~~~~~g~Glnl~~a~~vi~~~~~wn~~~~~Qa~~R~~R~Gq~~~v~i~~l~~~~Tiee~i~~~~~~ 209 (244)
T d1z5za1 141 IVLSVKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVGTLEEKIDQLLAF 209 (244)
T ss_dssp EEEECCTTCCCCCCTTCSEEEECSCCSCTTTC--------------CCEEEEEEETTSHHHHHHHHHHH
T ss_pred ccccccccccccccchhhhhhhcCchhhhHHHhhhcceeeecCCCCceEEEEEeeCCCHHHHHHHHHHH
Confidence 655 58899999999999999999999999999999999999975433 3345554 3334444433
|
| >d1z3ix1 c.37.1.19 (X:390-735) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Rad54-like, Rad54L species: Zebra fish (Danio rerio) [TaxId: 7955]
Probab=99.20 E-value=5.4e-11 Score=126.18 Aligned_cols=121 Identities=15% Similarity=0.268 Sum_probs=103.3
Q ss_pred hhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHHHHHHHHHHhhcCCCc--
Q psy15524 635 KLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSVKSG-- 712 (930)
Q Consensus 635 ~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~v~~~F~~~~~~-- 712 (930)
..|+..+..++..... ..+.|+|||+......+.+.+.|... |+.+..++|+++..+|..+++.|.++...
T Consensus 100 S~Kl~~L~~ll~~~~~----~~g~KvlIFs~~~~~ld~l~~~l~~~---g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~ 172 (346)
T d1z3ix1 100 SGKMLVLDYILAMTRT----TTSDKVVLVSNYTQTLDLFEKLCRNR---RYLYVRLDGTMSIKKRAKIVERFNNPSSPEF 172 (346)
T ss_dssp SHHHHHHHHHHHHHHH----HCCCEEEEEESCHHHHHHHHHHHHHH---TCCEEEECSSCCHHHHHHHHHHHHSTTCCCC
T ss_pred CHHHHHHHHHHHHHHH----hcCCceeEEeehhhhhHHHHHHHhhh---hccccccccchhHHHHHHHHHhhhcccccce
Confidence 4577777766654321 12679999999999999999999875 88899999999999999999999987543
Q ss_pred -EEEeccccccccCCCCccEEEEecCCCChhhHHhhhcccccCCCCceEEE
Q psy15524 713 -VLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLL 762 (930)
Q Consensus 713 -vLv~T~~~~~GlDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~g~~~~ 762 (930)
+|++|.+.+.|+|++.++.||.||+++++..+.|++||+.|.|+...+.+
T Consensus 173 vlLls~~agg~GlnL~~a~~vi~~d~~wnp~~~~Qa~~R~~R~GQ~~~V~v 223 (346)
T d1z3ix1 173 IFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYI 223 (346)
T ss_dssp EEEEEGGGSCTTCCCTTEEEEEECSCCSSHHHHHHHHTTSSSTTCCSCEEE
T ss_pred eeeecchhhhhccccccceEEEEecCCCccchHhHhhhcccccCCCCceEE
Confidence 67889999999999999999999999999999999999999999765543
|
| >d1yksa2 c.37.1.14 (A:325-623) YFV helicase domain {Yellow fever virus [TaxId: 11089]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: YFV helicase domain species: Yellow fever virus [TaxId: 11089]
Probab=99.15 E-value=4e-11 Score=123.20 Aligned_cols=101 Identities=18% Similarity=0.258 Sum_probs=79.2
Q ss_pred CceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHHHHHHHHHHhhcCCCcEEEeccccccccCCCCccEEEEec
Q psy15524 657 ESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYT 736 (930)
Q Consensus 657 ~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~v~~~F~~~~~~vLv~T~~~~~GlDip~v~~VI~~~ 736 (930)
.++++|||++..+++.+++.|.+. |..+..+||.+...++. .|++++.+|||||+++++|+|+ ++..||+.+
T Consensus 36 ~g~~~~F~~s~~~~~~~a~~L~~~---g~~V~~l~~~~~~~e~~----~~~~~~~~~~~~t~~~~~~~~~-~~~~vid~g 107 (299)
T d1yksa2 36 KRPTAWFLPSIRAANVMAASLRKA---GKSVVVLNRKTFEREYP----TIKQKKPDFILATDIAEMGANL-CVERVLDCR 107 (299)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHT---TCCEEECCSSSCC------------CCCSEEEESSSTTCCTTC-CCSEEEECC
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhc---CCeEEEEcCcCcHhHHh----hhhcCCcCEEEEechhhhceec-CceEEEecC
Confidence 679999999999999999999885 78899999999877654 5788999999999999999999 599999655
Q ss_pred C-------------------CCChhhHHhhhcccccCCCCceEEEEeC
Q psy15524 737 A-------------------PSSSTDYVHRVGRTARVGHEGSSLLFLI 765 (930)
Q Consensus 737 ~-------------------p~s~~~y~qr~GRagR~g~~g~~~~~~~ 765 (930)
. |.+..+-.||.||+||.+....++.++.
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~qr~gr~gr~~~~~~~~~~y~ 155 (299)
T d1yksa2 108 TAFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGRNPNRDGDSYYYS 155 (299)
T ss_dssp EEEEEEEETTTTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEEC
T ss_pred ceeceeeecCCCCeeEEeeeecCHHHHHHhcccccccCCCceEEEEeC
Confidence 3 2366778999999999865555555554
|
| >d1nkta4 c.37.1.19 (A:397-615) Translocation ATPase SecA, nucleotide-binding domains {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Translocation ATPase SecA, nucleotide-binding domains species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.95 E-value=1.2e-09 Score=101.95 Aligned_cols=131 Identities=18% Similarity=0.239 Sum_probs=108.1
Q ss_pred EEEcCchhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHHHHHHHHHHhhc
Q psy15524 629 FIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRS 708 (930)
Q Consensus 629 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~v~~~F~~ 708 (930)
.++.....|+.++...+...... +.|+||.+.|.+..+.++.+|.+. ++++..|++.-...+-..|-++-+.
T Consensus 11 ~Vy~T~~~K~~Avv~ei~~~h~~-----GqPVLVGT~SVe~SE~lS~lL~~~---gi~h~vLNAK~herEAeIIAqAG~~ 82 (219)
T d1nkta4 11 LIYKTEEAKYIAVVDDVAERYAK-----GQPVLIGTTSVERSEYLSRQFTKR---RIPHNVLNAKYHEQEATIIAVAGRR 82 (219)
T ss_dssp EEESCHHHHHHHHHHHHHHHHHT-----TCCEEEEESCHHHHHHHHHHHHHT---TCCCEEECSSCHHHHHHHHHTTTST
T ss_pred eEEcCHHHHHHHHHHHHHHHHhc-----CCCEEEeeCcHHHHHHHHHHHHHh---ccchhccchhhHHHHHHHHHhcccC
Confidence 34566778888888888765432 889999999999999999999985 8888899998766555556555555
Q ss_pred CCCcEEEeccccccccCCC---C--------------------------------------------c-----cEEEEec
Q psy15524 709 VKSGVLICTDVAARGLDLP---L--------------------------------------------V-----DWIVQYT 736 (930)
Q Consensus 709 ~~~~vLv~T~~~~~GlDip---~--------------------------------------------v-----~~VI~~~ 736 (930)
|. |.|||+|++||.||- + | -+||...
T Consensus 83 Ga--VTIATNMAGRGTDI~LGgn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIGTE 160 (219)
T d1nkta4 83 GG--VTVATNMAGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEEASKEAKEVIEAGGLYVLGTE 160 (219)
T ss_dssp TC--EEEEETTCSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTSEEEEECS
T ss_pred Cc--EEeeccccCCCCceeecCchhhhhHHHhhhcccCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEecc
Confidence 55 999999999999992 1 1 2799999
Q ss_pred CCCChhhHHhhhcccccCCCCceEEEEeCcccH
Q psy15524 737 APSSSTDYVHRVGRTARVGHEGSSLLFLIPSEV 769 (930)
Q Consensus 737 ~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~e~ 769 (930)
...|..---|..||+||.|.+|.+.+|++=++.
T Consensus 161 rHeSrRIDnQLRGRsGRQGDPGsSrFflSLeDd 193 (219)
T d1nkta4 161 RHESRRIDNQLRGRSGRQGDPGESRFYLSLGDE 193 (219)
T ss_dssp CCSSHHHHHHHHHTSSGGGCCEEEEEEEETTSH
T ss_pred ccccccccccccccccccCCCccceeEEeccHH
Confidence 999999999999999999999999999986554
|
| >d1z3ix2 c.37.1.19 (X:92-389) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Rad54-like, Rad54L species: Zebra fish (Danio rerio) [TaxId: 7955]
Probab=98.93 E-value=7.5e-09 Score=108.13 Aligned_cols=161 Identities=18% Similarity=0.220 Sum_probs=101.1
Q ss_pred CCCHHHHHhHHhhh---------cCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHH
Q psy15524 414 QVTTVQQLSIQPIL---------DGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLE 484 (930)
Q Consensus 414 ~~~~iQ~~~i~~il---------~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~ 484 (930)
.++|+|.+++.-+. .+..+|+.-..|.|||+..+ .++..+...... .......+|||+|. .|..||.+
T Consensus 55 ~Lr~hQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~qai-a~l~~l~~~~~~-~~~~~~~~LIV~P~-sl~~qW~~ 131 (298)
T d1z3ix2 55 VLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCI-TLIWTLLKQSPD-CKPEIDKVIVVSPS-SLVRNWYN 131 (298)
T ss_dssp TCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHH-HHHHHHHHCCTT-SSCSCSCEEEEECH-HHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHhhhhccCCceEEEeCCCCCHHHHHH-HHHHHHHHhccc-ccCCCCcEEEEccc-hhhHHHHH
Confidence 68899999997653 24568999999999999744 344444432211 11233469999997 68999999
Q ss_pred HHHHhhccCCCcceEEEeCCCchHHHHH--HHh------cCCcEEEECchhHHHhhhccCCcccccceEEEEecchhhhh
Q psy15524 485 IFTKLCKSFTWIVPSWLTGGEKMKSEKA--RIR------KGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILD 556 (930)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~gg~~~~~~~~--~~~------~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~l~~ 556 (930)
++.+++.... ....+.|+........ ... ...+++++|.+.+...... +.-.+++++|+||+|++-+
T Consensus 132 Ei~k~~~~~~--~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~sy~~~~~~~~~---l~~~~~~~vI~DEaH~ikn 206 (298)
T d1z3ix2 132 EVGKWLGGRV--QPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHAEV---LHKGKVGLVICDEGHRLKN 206 (298)
T ss_dssp HHHHHHGGGC--CEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHTTT---TTTSCCCEEEETTGGGCCT
T ss_pred HHHhhcCCce--eEEEEeCchHHHHHHHHHHhhhccCccccceEEEEeecccccchhc---ccccceeeeeccccccccc
Confidence 9999876422 2334445543222111 111 1256999998877654432 2334678999999999976
Q ss_pred cCcHHHHHHHHHHHhhcCccceEEEEccccCH
Q psy15524 557 QGYERDIAEFLEILKKQKPQFQSILLSATLTP 588 (930)
Q Consensus 557 ~g~~~~l~~i~~~l~~~~~~~q~vl~SAT~~~ 588 (930)
.+-. ....+..+. ....+++|||+-.
T Consensus 207 ~~s~--~~~a~~~l~----~~~rllLTGTPi~ 232 (298)
T d1z3ix2 207 SDNQ--TYLALNSMN----AQRRVLISGTPIQ 232 (298)
T ss_dssp TCHH--HHHHHHHHC----CSEEEEECSSCSG
T ss_pred ccch--hhhhhhccc----cceeeeecchHHh
Confidence 5422 222333342 3456899999853
|
| >d1tf5a3 c.37.1.19 (A:1-226,A:349-395) Translocation ATPase SecA, nucleotide-binding domains {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Translocation ATPase SecA, nucleotide-binding domains species: Bacillus subtilis [TaxId: 1423]
Probab=98.88 E-value=2.8e-09 Score=104.53 Aligned_cols=137 Identities=20% Similarity=0.223 Sum_probs=99.3
Q ss_pred HHHHhcCCCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHH
Q psy15524 404 KNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTL 483 (930)
Q Consensus 404 ~~l~~~~~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~ 483 (930)
++..+.+|. .++++|...--.+..| -++++.||.|||++..+|++-.... |..+-||+.+-.||..-+
T Consensus 71 EAakRtlG~-RhyDVQLiGgi~L~~G--~iaem~TGEGKTL~a~l~a~l~al~---------g~~vhvvTvNdyLA~RDa 138 (273)
T d1tf5a3 71 EASRRVTGM-FPFKVQLMGGVALHDG--NIAEMKTGEGKTLTSTLPVYLNALT---------GKGVHVVTVNEYLASRDA 138 (273)
T ss_dssp HHHHHHHSC-CCCHHHHHHHHHHHTT--SEEECCTTSCHHHHHHHHHHHHHTT---------SSCEEEEESSHHHHHHHH
T ss_pred HHHHHhhce-EEehhHHHHHHHHHhh--hheeecCCCcchhHHHHHHHHHHhc---------CCCceEEecCccccchhh
Confidence 333333453 4555565555445555 5999999999999999999876654 778999999999999999
Q ss_pred HHHHHhhccCCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhH-HHhhhcc-----CCcccccceEEEEecchhhh
Q psy15524 484 EIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRL-LDHCKHT-----ETLKFSKVEHLVLDEADRIL 555 (930)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl-~~~l~~~-----~~~~~~~l~~lVlDEah~l~ 555 (930)
+.+..++..++. .++++..+... +.++-...+||+++|+..+ .|.|+.. .....+.+.+.|+||+|.++
T Consensus 139 e~m~~iy~~lGl-svg~~~~~~~~--~~r~~~Y~~di~Ygt~~e~~fDyLrd~~~~~~~~~~~r~~~~aIvDEvDsil 213 (273)
T d1tf5a3 139 EQMGKIFEFLGL-TVGLNLNSMSK--DEKREAYAADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVDSIL 213 (273)
T ss_dssp HHHHHHHHHTTC-CEEECCTTSCH--HHHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEETHHHHH
T ss_pred hHHhHHHHHcCC-CccccccccCH--HHHHHHhhCCceecchhhhhhhhcchhhhcChhhhccCCCCEEEEEcchhhh
Confidence 999999988774 45666555443 3333445799999999886 4555432 22335779999999999876
|
| >d1z3ix2 c.37.1.19 (X:92-389) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Rad54-like, Rad54L species: Zebra fish (Danio rerio) [TaxId: 7955]
Probab=98.81 E-value=4.1e-08 Score=102.42 Aligned_cols=161 Identities=19% Similarity=0.217 Sum_probs=100.7
Q ss_pred cCcHHHHHHHHHhh---------cCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHH
Q psy15524 5 QVTTVQQLSIQPIL---------DGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLE 75 (930)
Q Consensus 5 ~l~~~Q~~ai~~~~---------~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~ 75 (930)
.|+|+|.+++..+. .+..+|++-..|.|||+..+..+ ..+....... ......+|||+|.. |+.|+.+
T Consensus 55 ~Lr~hQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~qaia~l-~~l~~~~~~~-~~~~~~~LIV~P~s-l~~qW~~ 131 (298)
T d1z3ix2 55 VLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLI-WTLLKQSPDC-KPEIDKVIVVSPSS-LVRNWYN 131 (298)
T ss_dssp TCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHH-HHHHHCCTTS-SCSCSCEEEEECHH-HHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHhhhhccCCceEEEeCCCCCHHHHHHHHH-HHHHHhcccc-cCCCCcEEEEccch-hhHHHHH
Confidence 58999999997542 34569999999999998754433 3333322111 11234589999975 8899999
Q ss_pred HHHHHhhhcCCceeEEeeCCCchHHHHH---Hhc-----CCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccc
Q psy15524 76 IFTKLCKSFTWIVPSWLTGGEKMKSEKA---RIR-----KGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILD 147 (930)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~l~-----~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~ 147 (930)
++.+++... .....++++........ ... ...+++++|.+.+..... .+.-.+.++||+||+|++-.
T Consensus 132 Ei~k~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~sy~~~~~~~~---~l~~~~~~~vI~DEaH~ikn 206 (298)
T d1z3ix2 132 EVGKWLGGR--VQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHAE---VLHKGKVGLVICDEGHRLKN 206 (298)
T ss_dssp HHHHHHGGG--CCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHTT---TTTTSCCCEEEETTGGGCCT
T ss_pred HHHhhcCCc--eeEEEEeCchHHHHHHHHHHhhhccCccccceEEEEeecccccchh---cccccceeeeeccccccccc
Confidence 999987642 23334555543332221 111 135799999988765433 22234678999999999865
Q ss_pred cCcHHHHHHHHHHHhhcCCCceEEEEEeecCC
Q psy15524 148 QGYERDIAEFLEILKKQKPQFQSILLSATLTP 179 (930)
Q Consensus 148 ~~~~~~~~~i~~~l~~~~~~~~~i~lSAT~~~ 179 (930)
..- .....+..+. ....++|||||-.
T Consensus 207 ~~s--~~~~a~~~l~----~~~rllLTGTPi~ 232 (298)
T d1z3ix2 207 SDN--QTYLALNSMN----AQRRVLISGTPIQ 232 (298)
T ss_dssp TCH--HHHHHHHHHC----CSEEEEECSSCSG
T ss_pred ccc--hhhhhhhccc----cceeeeecchHHh
Confidence 432 1122233332 2368999999953
|
| >d1z63a1 c.37.1.19 (A:432-661) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Helicase of the SNF2/Rad54 hamily species: Sulfolobus solfataricus [TaxId: 2287]
Probab=98.77 E-value=1.1e-08 Score=102.39 Aligned_cols=149 Identities=19% Similarity=0.173 Sum_probs=94.4
Q ss_pred CCCHHHHHhHHhhh----cCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHHHHh
Q psy15524 414 QVTTVQQLSIQPIL----DGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKL 489 (930)
Q Consensus 414 ~~~~iQ~~~i~~il----~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~ 489 (930)
++.|+|.+++..+. .+..+++..++|.|||+..+ .++..+... ....++|||+| ..+..|+.+++.++
T Consensus 12 ~L~~yQ~~~v~~~~~~~~~~~g~iLaDe~GlGKT~~~i-~~~~~~~~~------~~~~~~LIv~p-~~l~~~W~~e~~~~ 83 (230)
T d1z63a1 12 NLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTI-AVFSDAKKE------NELTPSLVICP-LSVLKNWEEELSKF 83 (230)
T ss_dssp CCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHH-HHHHHHHHT------TCCSSEEEEEC-STTHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhhhcCCCEEEEeCCCCChHHHHH-Hhhhhhhhc------ccccccceecc-hhhhhHHHHHHHhh
Confidence 68999999997654 34569999999999999854 444444431 23456899999 58889999999887
Q ss_pred hccCCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhccCCcccccceEEEEecchhhhhcCcHHHHHHHHHH
Q psy15524 490 CKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEI 569 (930)
Q Consensus 490 ~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~l~~~g~~~~l~~i~~~ 569 (930)
..... .. ..++...... ..+.+|+++|.+.+.... .+.--.+.++|+||||++-...-.. ...+..
T Consensus 84 ~~~~~---~~-~~~~~~~~~~----~~~~~vvi~~~~~~~~~~----~l~~~~~~~vI~DEah~~k~~~s~~--~~~~~~ 149 (230)
T d1z63a1 84 APHLR---FA-VFHEDRSKIK----LEDYDIILTTYAVLLRDT----RLKEVEWKYIVIDEAQNIKNPQTKI--FKAVKE 149 (230)
T ss_dssp CTTSC---EE-ECSSSTTSCC----GGGSSEEEEEHHHHTTCH----HHHTCCEEEEEEETGGGGSCTTSHH--HHHHHT
T ss_pred ccccc---ce-eeccccchhh----ccCcCEEEeeHHHHHhHH----HHhcccceEEEEEhhhcccccchhh--hhhhhh
Confidence 65322 12 2222111110 134789999987764321 1222357889999999997654322 111222
Q ss_pred HhhcCccceEEEEccccCH
Q psy15524 570 LKKQKPQFQSILLSATLTP 588 (930)
Q Consensus 570 l~~~~~~~q~vl~SAT~~~ 588 (930)
+ . ....+++|||+-.
T Consensus 150 l---~-a~~r~~LTgTPi~ 164 (230)
T d1z63a1 150 L---K-SKYRIALTGTPIE 164 (230)
T ss_dssp S---C-EEEEEEECSSCST
T ss_pred h---c-cceEEEEecchHH
Confidence 2 2 3356899999853
|
| >d1z63a1 c.37.1.19 (A:432-661) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Helicase of the SNF2/Rad54 hamily species: Sulfolobus solfataricus [TaxId: 2287]
Probab=98.66 E-value=3.6e-08 Score=98.59 Aligned_cols=149 Identities=18% Similarity=0.145 Sum_probs=94.4
Q ss_pred cCcHHHHHHHHHhh----cCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHH
Q psy15524 5 QVTTVQQLSIQPIL----DGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKL 80 (930)
Q Consensus 5 ~l~~~Q~~ai~~~~----~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~ 80 (930)
+|.|+|.+++..+. .+..+|++-++|.|||...+..+ ..+... .....+||++| ..+..|+.+++.++
T Consensus 12 ~L~~yQ~~~v~~~~~~~~~~~g~iLaDe~GlGKT~~~i~~~-~~~~~~------~~~~~~LIv~p-~~l~~~W~~e~~~~ 83 (230)
T d1z63a1 12 NLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVF-SDAKKE------NELTPSLVICP-LSVLKNWEEELSKF 83 (230)
T ss_dssp CCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHH-HHHHHT------TCCSSEEEEEC-STTHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhhhcCCCEEEEeCCCCChHHHHHHhh-hhhhhc------ccccccceecc-hhhhhHHHHHHHhh
Confidence 58999999997543 35679999999999999865544 333331 12234899998 66778888888888
Q ss_pred hhhcCCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCcHHHHHHHHHH
Q psy15524 81 CKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEI 160 (930)
Q Consensus 81 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~~~~~~~i~~~ 160 (930)
... ..+........... ....+|+++|.+.+..... +.--..++||+||+|.+....-.. ...+..
T Consensus 84 ~~~---~~~~~~~~~~~~~~-----~~~~~vvi~~~~~~~~~~~----l~~~~~~~vI~DEah~~k~~~s~~--~~~~~~ 149 (230)
T d1z63a1 84 APH---LRFAVFHEDRSKIK-----LEDYDIILTTYAVLLRDTR----LKEVEWKYIVIDEAQNIKNPQTKI--FKAVKE 149 (230)
T ss_dssp CTT---SCEEECSSSTTSCC-----GGGSSEEEEEHHHHTTCHH----HHTCCEEEEEEETGGGGSCTTSHH--HHHHHT
T ss_pred ccc---ccceeeccccchhh-----ccCcCEEEeeHHHHHhHHH----HhcccceEEEEEhhhcccccchhh--hhhhhh
Confidence 653 22322222211111 1246899999987744321 122356889999999997544321 111222
Q ss_pred HhhcCCCceEEEEEeecCC
Q psy15524 161 LKKQKPQFQSILLSATLTP 179 (930)
Q Consensus 161 l~~~~~~~~~i~lSAT~~~ 179 (930)
+. ....++|||||-.
T Consensus 150 l~----a~~r~~LTgTPi~ 164 (230)
T d1z63a1 150 LK----SKYRIALTGTPIE 164 (230)
T ss_dssp SC----EEEEEEECSSCST
T ss_pred hc----cceEEEEecchHH
Confidence 22 2357999999964
|
| >d1tf5a3 c.37.1.19 (A:1-226,A:349-395) Translocation ATPase SecA, nucleotide-binding domains {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Translocation ATPase SecA, nucleotide-binding domains species: Bacillus subtilis [TaxId: 1423]
Probab=98.19 E-value=9.1e-06 Score=79.29 Aligned_cols=128 Identities=21% Similarity=0.236 Sum_probs=94.0
Q ss_pred cCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHHhhhc
Q psy15524 5 QVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSF 84 (930)
Q Consensus 5 ~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~ 84 (930)
.+++.|--.--.+..| -+..+.||-|||++..+|+.-.... |..+=|+...-=||..=++++..+...+
T Consensus 80 RhyDVQLiGgi~L~~G--~iaem~TGEGKTL~a~l~a~l~al~---------g~~vhvvTvNdyLA~RDae~m~~iy~~l 148 (273)
T d1tf5a3 80 FPFKVQLMGGVALHDG--NIAEMKTGEGKTLTSTLPVYLNALT---------GKGVHVVTVNEYLASRDAEQMGKIFEFL 148 (273)
T ss_dssp CCCHHHHHHHHHHHTT--SEEECCTTSCHHHHHHHHHHHHHTT---------SSCEEEEESSHHHHHHHHHHHHHHHHHT
T ss_pred EEehhHHHHHHHHHhh--hheeecCCCcchhHHHHHHHHHHhc---------CCCceEEecCccccchhhhHHhHHHHHc
Confidence 4667776666666666 4999999999999999998766544 4448888888889999899999988877
Q ss_pred CCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHH-HHHhcC-----CCccCCCccEEEEccccccc
Q psy15524 85 TWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLL-DHCKHT-----ETLKFSKVEHLVLDEADRIL 146 (930)
Q Consensus 85 ~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~-~~l~~~-----~~~~l~~l~~vViDE~h~~~ 146 (930)
+ +.+++...+.......... .+||+++|...+- +.++.. .....+.+.+.||||+|.++
T Consensus 149 G-lsvg~~~~~~~~~~r~~~Y--~~di~Ygt~~e~~fDyLrd~~~~~~~~~~~r~~~~aIvDEvDsil 213 (273)
T d1tf5a3 149 G-LTVGLNLNSMSKDEKREAY--AADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVDSIL 213 (273)
T ss_dssp T-CCEEECCTTSCHHHHHHHH--HSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEETHHHHH
T ss_pred C-CCccccccccCHHHHHHHh--hCCceecchhhhhhhhcchhhhcChhhhccCCCCEEEEEcchhhh
Confidence 7 7777776655444333322 5899999998763 444431 22335789999999999764
|
| >d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Exodeoxyribonuclease V alpha chain (RecD) species: Escherichia coli [TaxId: 562]
Probab=97.83 E-value=4.2e-05 Score=80.42 Aligned_cols=82 Identities=17% Similarity=0.213 Sum_probs=59.5
Q ss_pred HHHHhcCCCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHH
Q psy15524 404 KNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTL 483 (930)
Q Consensus 404 ~~l~~~~~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~ 483 (930)
+.+.+.+.-...+..|.+|+..++.++-+++.+|.|||||.+ +.-++..+... ....+.++++++||-.-|.++.
T Consensus 138 ~~~~~~~~~~~~~~~Q~~A~~~al~~~~~vI~G~pGTGKTt~-i~~~l~~l~~~----~~~~~~~I~l~ApTgkAA~~L~ 212 (359)
T d1w36d1 138 QTLDKLFPVSDEINWQKVAAAVALTRRISVISGGPGTGKTTT-VAKLLAALIQM----ADGERCRIRLAAPTGKAAARLT 212 (359)
T ss_dssp HHHHTTCCCTTSCCHHHHHHHHHHTBSEEEEECCTTSTHHHH-HHHHHHHHHHT----CSSCCCCEEEEBSSHHHHHHHH
T ss_pred HHHHHhccCcccccHHHHHHHHHHcCCeEEEEcCCCCCceeh-HHHHHHHHHHH----HhccCCeEEEecCcHHHHHHHH
Confidence 334444444566788999999999888899999999999987 33444444432 1245778999999999888887
Q ss_pred HHHHHhh
Q psy15524 484 EIFTKLC 490 (930)
Q Consensus 484 ~~~~~~~ 490 (930)
+......
T Consensus 213 e~~~~~~ 219 (359)
T d1w36d1 213 ESLGKAL 219 (359)
T ss_dssp HHHTHHH
T ss_pred HHHHHHH
Confidence 7665543
|
| >d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Exodeoxyribonuclease V alpha chain (RecD) species: Escherichia coli [TaxId: 562]
Probab=97.47 E-value=0.00034 Score=73.25 Aligned_cols=73 Identities=19% Similarity=0.206 Sum_probs=53.7
Q ss_pred cCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHHhh
Q psy15524 5 QVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCK 82 (930)
Q Consensus 5 ~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~ 82 (930)
.+.+.|+.|+..++.++-++|.+|.|+|||.... .++..+.... ...+.++++.+||..=+..+.+.......
T Consensus 148 ~~~~~Q~~A~~~al~~~~~vI~G~pGTGKTt~i~-~~l~~l~~~~----~~~~~~I~l~ApTgkAA~~L~e~~~~~~~ 220 (359)
T d1w36d1 148 DEINWQKVAAAVALTRRISVISGGPGTGKTTTVA-KLLAALIQMA----DGERCRIRLAAPTGKAAARLTESLGKALR 220 (359)
T ss_dssp TSCCHHHHHHHHHHTBSEEEEECCTTSTHHHHHH-HHHHHHHHTC----SSCCCCEEEEBSSHHHHHHHHHHHTHHHH
T ss_pred ccccHHHHHHHHHHcCCeEEEEcCCCCCceehHH-HHHHHHHHHH----hccCCeEEEecCcHHHHHHHHHHHHHHHh
Confidence 4578999999999998889999999999998743 2333332211 13456799999999888887777655543
|
| >d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Escherichia coli, RepD [TaxId: 562]
Probab=97.02 E-value=0.00044 Score=71.15 Aligned_cols=71 Identities=20% Similarity=0.113 Sum_probs=53.7
Q ss_pred cCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHHhh
Q psy15524 5 QVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCK 82 (930)
Q Consensus 5 ~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~ 82 (930)
.|+|-|++|+.. ....++|.|+.|||||.+.+.-+...+..... +..++|++++|++++..+.+++.+...
T Consensus 1 ~L~~eQ~~av~~--~~~~~lI~g~aGTGKTt~l~~rv~~ll~~~~~-----~~~~ILvlt~tn~a~~~i~~~~~~~~~ 71 (306)
T d1uaaa1 1 RLNPGQQQAVEF--VTGPCLVLAGAGSGKTRVITNKIAHLIRGCGY-----QARHIAAVTFTNKAAREMKERVGQTLG 71 (306)
T ss_dssp CCCHHHHHHHHC--CSSEEEECCCTTSCHHHHHHHHHHHHHHHHCC-----CGGGEEEEESSHHHHHHHHHHHHHHSC
T ss_pred CcCHHHHHHHhC--CCCCEEEEeeCCccHHHHHHHHHHHHHHhcCC-----ChhHEEEEeCcHHHHHHHHHHHHHhcC
Confidence 489999999975 23469999999999999866555554433211 233599999999999999988877654
|
| >d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Escherichia coli, RepD [TaxId: 562]
Probab=96.96 E-value=0.00064 Score=69.84 Aligned_cols=71 Identities=20% Similarity=0.118 Sum_probs=52.4
Q ss_pred CCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHHHHhhc
Q psy15524 414 QVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCK 491 (930)
Q Consensus 414 ~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~ 491 (930)
+++|-|.+++.. ....++|.|+.|||||.+.+--+...+.... .+..+++|+++|+.++..+.+.+.+...
T Consensus 1 ~L~~eQ~~av~~--~~~~~lI~g~aGTGKTt~l~~rv~~ll~~~~-----~~~~~ILvlt~tn~a~~~i~~~~~~~~~ 71 (306)
T d1uaaa1 1 RLNPGQQQAVEF--VTGPCLVLAGAGSGKTRVITNKIAHLIRGCG-----YQARHIAAVTFTNKAAREMKERVGQTLG 71 (306)
T ss_dssp CCCHHHHHHHHC--CSSEEEECCCTTSCHHHHHHHHHHHHHHHHC-----CCGGGEEEEESSHHHHHHHHHHHHHHSC
T ss_pred CcCHHHHHHHhC--CCCCEEEEeeCCccHHHHHHHHHHHHHHhcC-----CChhHEEEEeCcHHHHHHHHHHHHHhcC
Confidence 478999999965 2456999999999999985544444443311 1234699999999999998888877654
|
| >d1hv8a2 c.37.1.19 (A:211-365) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative DEAD box RNA helicase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=96.77 E-value=0.00062 Score=62.08 Aligned_cols=51 Identities=20% Similarity=0.245 Sum_probs=44.7
Q ss_pred CCceeEEEEcCcchhHHHHHHHHhhhccccccCCcceEEEEEecccchhhhHHHHhhhh
Q psy15524 275 DSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTKK 333 (930)
Q Consensus 275 ~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~ 333 (930)
++|+|.|+.++..+|+..|..+|. ..+.++||||+++++|+.++..|+..|
T Consensus 2 ~nI~~~~i~v~~~~K~~~L~~ll~--------~~~~k~IIF~~s~~~~~~l~~~L~~~g 52 (155)
T d1hv8a2 2 ANIEQSYVEVNENERFEALCRLLK--------NKEFYGLVFCKTKRDTKELASMLRDIG 52 (155)
T ss_dssp SSSEEEEEECCGGGHHHHHHHHHC--------STTCCEEEECSSHHHHHHHHHHHHHTT
T ss_pred CCeEEEEEEeChHHHHHHHHHHHc--------cCCCCEEEEECchHHHHHHHhhhcccc
Confidence 579999999999999999999982 235689999999999999999998654
|
| >d1s2ma2 c.37.1.19 (A:252-422) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative ATP-dependent RNA helicase DHH1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.72 E-value=0.00061 Score=63.26 Aligned_cols=53 Identities=8% Similarity=0.197 Sum_probs=46.7
Q ss_pred CCCceeEEEEcCcchhHHHHHHHHhhhccccccCCcceEEEEEecccchhhhHHHHhhhh
Q psy15524 274 PDSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTKK 333 (930)
Q Consensus 274 ~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~ 333 (930)
..++.|+|..+++.+|...|.++|. .....++||||++++.++.++..|+..|
T Consensus 4 l~~i~q~yi~v~~~~K~~~L~~ll~-------~~~~~k~iVF~~~~~~~~~l~~~L~~~g 56 (171)
T d1s2ma2 4 LKGITQYYAFVEERQKLHCLNTLFS-------KLQINQAIIFCNSTNRVELLAKKITDLG 56 (171)
T ss_dssp CTTEEEEEEECCGGGHHHHHHHHHH-------HSCCSEEEEECSSHHHHHHHHHHHHHHT
T ss_pred ccceEEEEEEcCHHHHHHHHHHHHH-------hCCCCceEEEEeeeehhhHhHHhhhccc
Confidence 5679999999999999999999993 3456799999999999999999998654
|
| >d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Bacillus stearothermophilus, PcrA [TaxId: 1422]
Probab=96.62 E-value=0.0021 Score=66.26 Aligned_cols=71 Identities=23% Similarity=0.193 Sum_probs=54.7
Q ss_pred cCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHHhh
Q psy15524 5 QVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCK 82 (930)
Q Consensus 5 ~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~ 82 (930)
.|++-|++++... +..++|.|+.|||||.+.+--+.+.+.... .+..+++++++++..+.++..++.....
T Consensus 11 ~L~~eQ~~~v~~~--~g~~lV~g~aGSGKTt~l~~ri~~ll~~~~-----~~p~~il~lt~t~~aa~~~~~~~~~~~~ 81 (318)
T d1pjra1 11 HLNKEQQEAVRTT--EGPLLIMAGAGSGKTRVLTHRIAYLMAEKH-----VAPWNILAITFTNKAAREMRERVQSLLG 81 (318)
T ss_dssp TSCHHHHHHHHCC--SSCEEEEECTTSCHHHHHHHHHHHHHHTTC-----CCGGGEEEEESSHHHHHHHHHHHHHHHG
T ss_pred hCCHHHHHHHhCC--CCCEEEEecCCccHHHHHHHHHHHHHHcCC-----CCHHHeEeEeccHHHHHHHHHHHHhhcc
Confidence 4899999999853 447999999999999987666655554311 1223599999999999999998877654
|
| >d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Bacillus stearothermophilus, PcrA [TaxId: 1422]
Probab=96.44 E-value=0.0032 Score=64.84 Aligned_cols=71 Identities=23% Similarity=0.193 Sum_probs=53.3
Q ss_pred CCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHHHHhhc
Q psy15524 414 QVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCK 491 (930)
Q Consensus 414 ~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~ 491 (930)
.+++-|.+++... +..++|.|+.|||||.+.+--+...+.... .+..+++++++|+.++..+...+.....
T Consensus 11 ~L~~eQ~~~v~~~--~g~~lV~g~aGSGKTt~l~~ri~~ll~~~~-----~~p~~il~lt~t~~aa~~~~~~~~~~~~ 81 (318)
T d1pjra1 11 HLNKEQQEAVRTT--EGPLLIMAGAGSGKTRVLTHRIAYLMAEKH-----VAPWNILAITFTNKAAREMRERVQSLLG 81 (318)
T ss_dssp TSCHHHHHHHHCC--SSCEEEEECTTSCHHHHHHHHHHHHHHTTC-----CCGGGEEEEESSHHHHHHHHHHHHHHHG
T ss_pred hCCHHHHHHHhCC--CCCEEEEecCCccHHHHHHHHHHHHHHcCC-----CCHHHeEeEeccHHHHHHHHHHHHhhcc
Confidence 4788999999753 456999999999999986555554444311 1234699999999999999888876543
|
| >d1t5ia_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Spliceosome RNA helicase BAT1 (UAP56) species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.14 E-value=0.0018 Score=59.61 Aligned_cols=50 Identities=14% Similarity=0.151 Sum_probs=43.9
Q ss_pred ceeEEEEcCcchhHHHHHHHHhhhccccccCCcceEEEEEecccchhhhHHHHhhhh
Q psy15524 277 LKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTKK 333 (930)
Q Consensus 277 i~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~ 333 (930)
++|+|+.+.+.+|...|.++|. .....++||||++++.++.++..|.+.+
T Consensus 2 l~q~~v~~~~~~K~~~L~~ll~-------~~~~~k~iIF~~~~~~~~~l~~~L~~~~ 51 (168)
T d1t5ia_ 2 LQQYYVKLKDNEKNRKLFDLLD-------VLEFNQVVIFVKSVQRCIALAQLLVEQN 51 (168)
T ss_dssp CEEEEEECCGGGHHHHHHHHHH-------HSCCSSEEEECSSHHHHHHHHHHHHHTT
T ss_pred cEEEEEEeChHHHHHHHHHHHH-------hCCCCeEEEEEeeeecchhhhhhhcccc
Confidence 7899999999999999999994 3456789999999999999999998654
|
| >d1fuka_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Initiation factor 4a species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.02 E-value=0.0023 Score=58.49 Aligned_cols=51 Identities=16% Similarity=0.209 Sum_probs=41.8
Q ss_pred ceeEEEEcCc-chhHHHHHHHHhhhccccccCCcceEEEEEecccchhhhHHHHhhhhh
Q psy15524 277 LKQHFIVTPP-KLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTKKK 334 (930)
Q Consensus 277 i~~~~~~~~~-~~k~~~l~~~l~~~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~ 334 (930)
|+|+|+.+.. +.|+..|..++. .....++||||+++..++.++..|...+.
T Consensus 1 I~q~~~~v~~~e~K~~~L~~ll~-------~~~~~k~iIF~~s~~~~~~l~~~L~~~~~ 52 (162)
T d1fuka_ 1 IKQFYVNVEEEEYKYECLTDLYD-------SISVTQAVIFCNTRRKVEELTTKLRNDKF 52 (162)
T ss_dssp CEEEEEEEESGGGHHHHHHHHHH-------HTTCSCEEEEESSHHHHHHHHHHHHHTTC
T ss_pred CEEEEEEeCCcHHHHHHHHHHHH-------hCCCCcEEEEEEEEchHHHHHHHHhhcCc
Confidence 5788888865 559999999983 34567999999999999999999977653
|
| >d2j0sa2 c.37.1.19 (A:244-411) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Probable ATP-dependent RNA helicase DDX48 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.70 E-value=0.0033 Score=57.73 Aligned_cols=53 Identities=17% Similarity=0.289 Sum_probs=44.5
Q ss_pred CCCceeEEEEcCcc-hhHHHHHHHHhhhccccccCCcceEEEEEecccchhhhHHHHhhhh
Q psy15524 274 PDSLKQHFIVTPPK-LRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTKK 333 (930)
Q Consensus 274 ~~~i~~~~~~~~~~-~k~~~l~~~l~~~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~ 333 (930)
..+++|+|+.++.. .|...|..++. .....++||||++++.|+.++..|+..+
T Consensus 5 l~~i~q~~v~v~~~~~K~~~L~~ll~-------~~~~~k~iiF~~~~~~~~~~~~~l~~~~ 58 (168)
T d2j0sa2 5 LEGIKQFFVAVEREEWKFDTLCDLYD-------TLTITQAVIFCNTKRKVDWLTEKMREAN 58 (168)
T ss_dssp CTTEEEEEEEESSTTHHHHHHHHHHH-------HHTSSEEEEECSSHHHHHHHHHHHHHTT
T ss_pred CCCcEEEEEEecChHHHHHHHHHHHH-------hCCCCceEEEeeeHHHHHHHHHHhhhcc
Confidence 47899999998764 59999999984 3456799999999999999999998653
|
| >d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=95.68 E-value=0.042 Score=51.98 Aligned_cols=36 Identities=11% Similarity=0.140 Sum_probs=27.1
Q ss_pred CcHHHHHHHHHhh----cCC---cEEEEcCCCChHHHHHHHHH
Q psy15524 6 VTTVQQLSIQPIL----DGG---DVLVRSQTGSGKTLAYAIPI 41 (930)
Q Consensus 6 l~~~Q~~ai~~~~----~g~---~~lv~apTGsGKT~~~~l~~ 41 (930)
++|||..++..+. .++ .+|++||.|+|||.....-+
T Consensus 3 ~yPw~~~~~~~l~~~~~~~~l~h~lLl~Gp~G~GKtt~a~~~a 45 (207)
T d1a5ta2 3 WYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALS 45 (207)
T ss_dssp CCGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHH
T ss_pred CCcccHHHHHHHHHHHHcCCcCeEEEEECCCCCcHHHHHHHHH
Confidence 5789988887653 333 49999999999998655444
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=95.64 E-value=0.052 Score=51.55 Aligned_cols=45 Identities=18% Similarity=0.313 Sum_probs=29.8
Q ss_pred CccEEEEccccccccc-CcHHHHHHHHHHHhhcCCCceEEEEEeecCCC
Q psy15524 133 KVEHLVLDEADRILDQ-GYERDIAEFLEILKKQKPQFQSILLSATLTPA 180 (930)
Q Consensus 133 ~l~~vViDE~h~~~~~-~~~~~~~~i~~~l~~~~~~~~~i~lSAT~~~~ 180 (930)
..++++||++|.+... ..+..+-.++..+...+ ..+.+|+..++.
T Consensus 97 ~~dll~iDDi~~i~~~~~~~~~lf~lin~~~~~~---~~iiits~~~p~ 142 (213)
T d1l8qa2 97 SVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLE---KQIILASDRHPQ 142 (213)
T ss_dssp TCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTT---CEEEEEESSCGG
T ss_pred hccchhhhhhhhhcCchHHHHHHHHHHHHHhhcc---ceEEEecCCcch
Confidence 5789999999998754 34455666777666544 345556665543
|
| >d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=95.52 E-value=0.053 Score=51.26 Aligned_cols=43 Identities=12% Similarity=0.135 Sum_probs=28.6
Q ss_pred cccceEEEEecchhhhhcCcHHHHHHHHHHHhhcCccceEEEEcccc
Q psy15524 540 FSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATL 586 (930)
Q Consensus 540 ~~~l~~lVlDEah~l~~~g~~~~l~~i~~~l~~~~~~~q~vl~SAT~ 586 (930)
....+++|+||+|.+.. .....+++.+...+....+++.+-.+
T Consensus 106 ~~~~kviIide~d~l~~----~a~n~Llk~lEep~~~~~fIl~t~~~ 148 (207)
T d1a5ta2 106 LGGAKVVWVTDAALLTD----AAANALLKTLEEPPAETWFFLATREP 148 (207)
T ss_dssp TSSCEEEEESCGGGBCH----HHHHHHHHHHTSCCTTEEEEEEESCG
T ss_pred cCccceEEechhhhhhh----hhhHHHHHHHHhhcccceeeeeecCh
Confidence 34678999999998864 34566777777655555555554433
|
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=95.29 E-value=0.2 Score=48.20 Aligned_cols=51 Identities=20% Similarity=0.295 Sum_probs=33.6
Q ss_pred CCCCCCCCCCCCCHHHHHHHHhcCCCCCCCHHHHHhHHhhhcC---CcEEEEccCCCchhHHhhHHHHHHHH
Q psy15524 387 FAPTSYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDG---GDVLVRSQTGSGKTLAYAIPIIQKLQ 455 (930)
Q Consensus 387 ~~~~~f~~l~~l~~~~~~~l~~~~~~~~~~~iQ~~~i~~il~~---~d~lv~a~TGsGKTl~~~lp~l~~l~ 455 (930)
+.+.+|+++ -.++.+.+.|... +.++ ..+++.+|+|+|||.++. .+...+.
T Consensus 6 yrP~~~~dl-ig~~~~~~~L~~~----------------i~~~~~~~~~Ll~Gp~G~GKtt~a~-~~~~~l~ 59 (239)
T d1njfa_ 6 WRPQTFADV-VGQEHVLTALANG----------------LSLGRIHHAYLFSGTRGVGKTSIAR-LLAKGLN 59 (239)
T ss_dssp TCCSSGGGS-CSCHHHHHHHHHH----------------HHTTCCCSEEEEECSTTSSHHHHHH-HHHHHHH
T ss_pred hCCCCHHHc-cChHHHHHHHHHH----------------HHcCCCCeeEEEECCCCCcHHHHHH-HHHHHhc
Confidence 456788998 5677777766531 1122 238999999999998754 4444444
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.05 E-value=0.087 Score=50.35 Aligned_cols=45 Identities=18% Similarity=0.237 Sum_probs=30.1
Q ss_pred CCCCCCCCCCCCCHHHHHHHHhcCCCCCCCHHHHHhHHhhhcC--CcEEEEccCCCchhHHhhH
Q psy15524 387 FAPTSYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDG--GDVLVRSQTGSGKTLAYAI 448 (930)
Q Consensus 387 ~~~~~f~~l~~l~~~~~~~l~~~~~~~~~~~iQ~~~i~~il~~--~d~lv~a~TGsGKTl~~~l 448 (930)
+.+.+|+++ --++.+++.|.+. +.++ .++++.||.|+|||.++-+
T Consensus 9 yrP~~~~d~-ig~~~~~~~L~~~----------------~~~~~~~~~ll~Gp~G~GKTt~a~~ 55 (224)
T d1sxjb2 9 YRPQVLSDI-VGNKETIDRLQQI----------------AKDGNMPHMIISGMPGIGKTTSVHC 55 (224)
T ss_dssp TCCSSGGGC-CSCTHHHHHHHHH----------------HHSCCCCCEEEECSTTSSHHHHHHH
T ss_pred hCCCCHHHh-cCCHHHHHHHHHH----------------HHcCCCCeEEEECCCCCCchhhHHH
Confidence 556788888 5556666666431 1222 2589999999999987433
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.88 E-value=0.027 Score=55.25 Aligned_cols=54 Identities=15% Similarity=0.263 Sum_probs=34.2
Q ss_pred cCCCCCCCCCCCCCHHHHHHHHhcCCCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHH
Q psy15524 386 LFAPTSYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKL 454 (930)
Q Consensus 386 ~~~~~~f~~l~~l~~~~~~~l~~~~~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l 454 (930)
-+.+.+|+++ .-+..+.+.|.....-. .....+++.||.|+|||... ..+.+.+
T Consensus 4 ky~P~~~~di-ig~~~~~~~L~~~~~~~-------------~~~~~lll~Gp~G~GKTt~~-~~la~~l 57 (252)
T d1sxje2 4 KYRPKSLNAL-SHNEELTNFLKSLSDQP-------------RDLPHLLLYGPNGTGKKTRC-MALLESI 57 (252)
T ss_dssp TTCCCSGGGC-CSCHHHHHHHHTTTTCT-------------TCCCCEEEECSTTSSHHHHH-HTHHHHH
T ss_pred ccCCCCHHHc-cCcHHHHHHHHHHHHcC-------------CCCCeEEEECCCCCCHHHHH-HHHHHhh
Confidence 3556789998 66777877776321100 01235899999999999863 3344443
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=94.79 E-value=0.14 Score=47.96 Aligned_cols=54 Identities=19% Similarity=0.230 Sum_probs=33.5
Q ss_pred CCc-EEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEc--cCHHHHHHHHHHHHHhhc
Q psy15524 429 GGD-VLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIIL--PTRELALQTLEIFTKLCK 491 (930)
Q Consensus 429 ~~d-~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~--PtreLa~Q~~~~~~~~~~ 491 (930)
.++ +++.+|||+|||.+..--+. ++.. .|.++.+++ ..|.-|.++.+.+.+...
T Consensus 9 ~~~vi~lvGp~GvGKTTTiaKLA~-~~~~--------~g~kV~lit~Dt~R~gA~eQL~~~a~~l~ 65 (207)
T d1ls1a2 9 DRNLWFLVGLQGSGKTTTAAKLAL-YYKG--------KGRRPLLVAADTQRPAAREQLRLLGEKVG 65 (207)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHH-HHHH--------TTCCEEEEECCSSCHHHHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH-HHHH--------CCCcEEEEecccccchHHHHHHHHHHhcC
Confidence 345 56699999999987443333 2322 144455555 367777777776666553
|
| >d1t5la1 c.37.1.19 (A:2-414) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Nucleotide excision repair enzyme UvrB species: Bacillus caldotenax [TaxId: 1395]
Probab=94.61 E-value=0.024 Score=59.42 Aligned_cols=62 Identities=23% Similarity=0.308 Sum_probs=45.1
Q ss_pred HHHHhHHhhhc----C-CcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHHHHhhc
Q psy15524 418 VQQLSIQPILD----G-GDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCK 491 (930)
Q Consensus 418 iQ~~~i~~il~----~-~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~ 491 (930)
-|=+||..+.+ | ++.++.+-||||||++. ..++... +..+|||+|+..+|.|+++.+..++.
T Consensus 15 DQP~aI~~l~~~l~~g~~~q~l~GltGS~ka~~i-A~l~~~~-----------~rp~LVVt~n~~~A~qL~~dL~~~l~ 81 (413)
T d1t5la1 15 DQPQAIAKLVDGLRRGVKHQTLLGATGTGKTFTI-SNVIAQV-----------NKPTLVIAHNKTLAGQLYSELKEFFP 81 (413)
T ss_dssp THHHHHHHHHHHHHHTCSEEEEEECTTSCHHHHH-HHHHHHH-----------TCCEEEECSSHHHHHHHHHHHHHHCT
T ss_pred CCHHHHHHHHHHHhcCCCcEEEeCCCCcHHHHHH-HHHHHHh-----------CCCEEEEeCCHHHHHHHHHHHHHHcC
Confidence 35555544443 4 56889999999999752 3333332 33489999999999999999999874
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=93.90 E-value=0.15 Score=48.12 Aligned_cols=46 Identities=20% Similarity=0.299 Sum_probs=29.5
Q ss_pred cccceEEEEecchhhhhc-CcHHHHHHHHHHHhhcCccceEEEEccccCH
Q psy15524 540 FSKVEHLVLDEADRILDQ-GYERDIAEFLEILKKQKPQFQSILLSATLTP 588 (930)
Q Consensus 540 ~~~l~~lVlDEah~l~~~-g~~~~l~~i~~~l~~~~~~~q~vl~SAT~~~ 588 (930)
+...++++||++|.+... .++..+..++..+... +.++++ |++.++
T Consensus 95 ~~~~dll~iDDi~~i~~~~~~~~~lf~lin~~~~~--~~~iii-ts~~~p 141 (213)
T d1l8qa2 95 YKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLL--EKQIIL-ASDRHP 141 (213)
T ss_dssp HHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHT--TCEEEE-EESSCG
T ss_pred HhhccchhhhhhhhhcCchHHHHHHHHHHHHHhhc--cceEEE-ecCCcc
Confidence 345789999999998643 3456667777776542 445555 544443
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=93.76 E-value=0.12 Score=50.00 Aligned_cols=17 Identities=35% Similarity=0.376 Sum_probs=14.8
Q ss_pred CcEEEEccCCCchhHHh
Q psy15524 430 GDVLVRSQTGSGKTLAY 446 (930)
Q Consensus 430 ~d~lv~a~TGsGKTl~~ 446 (930)
+.+++.+|.|+|||+..
T Consensus 43 ~giLl~GppGtGKT~la 59 (247)
T d1ixza_ 43 KGVLLVGPPGVGKTHLA 59 (247)
T ss_dssp SEEEEECCTTSSHHHHH
T ss_pred ceEEEecCCCCChhHHH
Confidence 56999999999999863
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=93.61 E-value=0.28 Score=46.77 Aligned_cols=46 Identities=20% Similarity=0.229 Sum_probs=30.8
Q ss_pred cCCCCCCCCCCCCCHHHHHHHHhcCCCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHh
Q psy15524 386 LFAPTSYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAY 446 (930)
Q Consensus 386 ~~~~~~f~~l~~l~~~~~~~l~~~~~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~ 446 (930)
-+.+.+|+++ -.+..+.+.|.... +.. ...++++.||+|+|||.++
T Consensus 17 ky~P~~~~di-ig~~~~~~~l~~~i--------~~~------~~~~lll~Gp~G~GKTtla 62 (231)
T d1iqpa2 17 KYRPQRLDDI-VGQEHIVKRLKHYV--------KTG------SMPHLLFAGPPGVGKTTAA 62 (231)
T ss_dssp HTCCCSTTTC-CSCHHHHHHHHHHH--------HHT------CCCEEEEESCTTSSHHHHH
T ss_pred HhCCCCHHHc-cCcHHHHHHHHHHH--------HcC------CCCeEEEECCCCCcHHHHH
Confidence 4566789998 56677776665311 100 1245999999999999864
|
| >d2eyqa5 c.37.1.19 (A:779-989) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Transcription-repair coupling factor, TRCF species: Escherichia coli [TaxId: 562]
Probab=93.43 E-value=0.14 Score=47.53 Aligned_cols=105 Identities=12% Similarity=0.113 Sum_probs=72.6
Q ss_pred CCeEEEEEcccHHHHHHHHHHHHHHhhhcCCceeEEeeCCCchHHHHHH----hcCCCcEEEEChHHHHHHHhcCCCccC
Q psy15524 56 DGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKAR----IRKGISILVATPGRLLDHCKHTETLKF 131 (930)
Q Consensus 56 ~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~----l~~~~~Ilv~Tp~~l~~~l~~~~~~~l 131 (930)
.|.++.||+|..+-+...++.+++.+. ..++.++.|..+..+.... ..+..+|||||+ .+. ..++.
T Consensus 30 rGgQvy~V~p~I~~~e~~~~~l~~~~p---~~~i~~lHGkm~~~eke~im~~F~~g~~~ILv~Tt-----vIE--vGiDv 99 (211)
T d2eyqa5 30 RGGQVYYLYNDVENIQKAAERLAELVP---EARIAIGHGQMRERELERVMNDFHHQRFNVLVCTT-----IIE--TGIDI 99 (211)
T ss_dssp TTCEEEEECCCSSCHHHHHHHHHHHCT---TSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESS-----TTG--GGSCC
T ss_pred cCCeEEEEEcCccchhhHHHHHHHhCC---ceEEEEEEeccCHHHHHHHHHHHHcCCcceEEEeh-----hhh--hccCC
Confidence 478899999999988888888888754 4678888887765544332 245699999995 222 56788
Q ss_pred CCccEEEEcccccccccCcHHHHHHHHHHHhhcCCCceEEEEE
Q psy15524 132 SKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLS 174 (930)
Q Consensus 132 ~~l~~vViDE~h~~~~~~~~~~~~~i~~~l~~~~~~~~~i~lS 174 (930)
.+..++||..||++. -.++..+..+.-......-.++++
T Consensus 100 pnA~~iiI~~a~rfG----LaQLhQLRGRVGR~~~~s~c~l~~ 138 (211)
T d2eyqa5 100 PTANTIIIERADHFG----LAQLHQLRGRVGRSHHQAYAWLLT 138 (211)
T ss_dssp TTEEEEEETTTTSSC----HHHHHHHHTTCCBTTBCEEEEEEE
T ss_pred CCCcEEEEecchhcc----ccccccccceeeecCccceEEEEe
Confidence 999999999999763 244555555544333333344444
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.37 E-value=0.17 Score=48.15 Aligned_cols=43 Identities=19% Similarity=0.279 Sum_probs=29.3
Q ss_pred CCCCCCCCCCCCCHHHHHHHHhcCCCCCCCHHHHHhHHhhhcC--CcEEEEccCCCchhHHh
Q psy15524 387 FAPTSYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDG--GDVLVRSQTGSGKTLAY 446 (930)
Q Consensus 387 ~~~~~f~~l~~l~~~~~~~l~~~~~~~~~~~iQ~~~i~~il~~--~d~lv~a~TGsGKTl~~ 446 (930)
+.+.+|+++ --++.+++.|... +.++ .++++.||+|+|||.+.
T Consensus 8 yrP~~~~di-vg~~~~~~~L~~~----------------i~~~~~~~lLl~Gp~G~GKttl~ 52 (227)
T d1sxjc2 8 YRPETLDEV-YGQNEVITTVRKF----------------VDEGKLPHLLFYGPPGTGKTSTI 52 (227)
T ss_dssp TCCSSGGGC-CSCHHHHHHHHHH----------------HHTTCCCCEEEECSSSSSHHHHH
T ss_pred hCCCCHHHc-cCcHHHHHHHHHH----------------HHcCCCCeEEEECCCCCChhHHH
Confidence 456788888 5567777766532 1122 24899999999999753
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.29 E-value=0.1 Score=50.15 Aligned_cols=44 Identities=18% Similarity=0.308 Sum_probs=27.4
Q ss_pred CCCCCCCCCCCCCHHHHHHHHhcCCCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHH
Q psy15524 387 FAPTSYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLA 445 (930)
Q Consensus 387 ~~~~~f~~l~~l~~~~~~~l~~~~~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~ 445 (930)
+.+.+|+++ --++.+.+.|.....-. ...++++.||+|+|||..
T Consensus 6 y~P~~~~di-ig~~~~~~~l~~~i~~~--------------~~~~lll~Gp~G~GKTtl 49 (237)
T d1sxjd2 6 YRPKNLDEV-TAQDHAVTVLKKTLKSA--------------NLPHMLFYGPPGTGKTST 49 (237)
T ss_dssp TCCSSTTTC-CSCCTTHHHHHHHTTCT--------------TCCCEEEECSTTSSHHHH
T ss_pred hCCCCHHHc-cCcHHHHHHHHHHHHcC--------------CCCeEEEECCCCCChHHH
Confidence 456778888 44555555554321100 113489999999999976
|
| >d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: gamma subunit of DNA polymerase III, N-domain species: Thermotoga maritima [TaxId: 2336]
Probab=93.07 E-value=0.29 Score=45.42 Aligned_cols=43 Identities=12% Similarity=0.220 Sum_probs=30.7
Q ss_pred ccceEEEEecchhhhhcCcHHHHHHHHHHHhhcCccceEEEEccccC
Q psy15524 541 SKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLT 587 (930)
Q Consensus 541 ~~l~~lVlDEah~l~~~g~~~~l~~i~~~l~~~~~~~q~vl~SAT~~ 587 (930)
...+++|+||||+|.. .....+++.+...+....+++.|..+.
T Consensus 78 ~~~KviIId~ad~l~~----~aqNaLLK~LEEPp~~t~fiLit~~~~ 120 (198)
T d2gnoa2 78 YTRKYVIVHDCERMTQ----QAANAFLKALEEPPEYAVIVLNTRRWH 120 (198)
T ss_dssp SSSEEEEETTGGGBCH----HHHHHTHHHHHSCCTTEEEEEEESCGG
T ss_pred CCCEEEEEeCccccch----hhhhHHHHHHhCCCCCceeeeccCChh
Confidence 4568999999999864 445667777776556777777766543
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=92.98 E-value=0.47 Score=44.16 Aligned_cols=50 Identities=18% Similarity=0.319 Sum_probs=29.8
Q ss_pred EEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEc-c-CHHHHHHHHHHHHHhh
Q psy15524 432 VLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIIL-P-TRELALQTLEIFTKLC 490 (930)
Q Consensus 432 ~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~-P-treLa~Q~~~~~~~~~ 490 (930)
+++.+|||+|||.+..=-+ .++.. .|.++.+++ - .|.=|.++.+.+.+..
T Consensus 12 i~lvGptGvGKTTTiAKLA-~~~~~--------~g~kV~lit~Dt~R~gA~eQL~~~a~~l 63 (211)
T d2qy9a2 12 ILMVGVNGVGKTTTIGKLA-RQFEQ--------QGKSVMLAAGDTFRAAAVEQLQVWGQRN 63 (211)
T ss_dssp EEEECCTTSCHHHHHHHHH-HHHHT--------TTCCEEEECCCTTCHHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHH-HHHHH--------CCCcEEEEecccccccchhhhhhhhhhc
Confidence 5679999999999744333 23332 234454444 3 3666666666655554
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=92.68 E-value=0.48 Score=44.15 Aligned_cols=51 Identities=16% Similarity=0.188 Sum_probs=25.8
Q ss_pred EEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEc-c-CHHHHHHHHHHHHHhhc
Q psy15524 432 VLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIIL-P-TRELALQTLEIFTKLCK 491 (930)
Q Consensus 432 ~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~-P-treLa~Q~~~~~~~~~~ 491 (930)
+++.+|||+|||.+..=-+ .++.. .|.++.+++ - .|.=|.++.+.+.+..+
T Consensus 15 i~lvGptGvGKTTTiAKLA-~~~~~--------~g~kV~lit~Dt~R~ga~eQL~~~a~~l~ 67 (211)
T d1j8yf2 15 IMLVGVQGTGKATTAGKLA-YFYKK--------KGFKVGLVGADVYRPAALEQLQQLGQQIG 67 (211)
T ss_dssp EEEECSCCC----HHHHHH-HHHHH--------TTCCEEEEECCCSSHHHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHH-HHHHH--------CCCceEEEEeeccccchhHHHHHhccccC
Confidence 5668999999998744333 33332 133344444 3 46666666666655543
|
| >d1t5la1 c.37.1.19 (A:2-414) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Nucleotide excision repair enzyme UvrB species: Bacillus caldotenax [TaxId: 1395]
Probab=92.35 E-value=0.072 Score=55.71 Aligned_cols=66 Identities=21% Similarity=0.300 Sum_probs=49.2
Q ss_pred cCcHHHHHHHHHhhc----C-CcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHH
Q psy15524 5 QVTTVQQLSIQPILD----G-GDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTK 79 (930)
Q Consensus 5 ~l~~~Q~~ai~~~~~----g-~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~ 79 (930)
.|+--|=+||..+.+ | ++.++.+-||||||++.. .++.... ..+|||+|+..+|.|+++.|+.
T Consensus 11 ~p~gDQP~aI~~l~~~l~~g~~~q~l~GltGS~ka~~iA-~l~~~~~-----------rp~LVVt~n~~~A~qL~~dL~~ 78 (413)
T d1t5la1 11 EPQGDQPQAIAKLVDGLRRGVKHQTLLGATGTGKTFTIS-NVIAQVN-----------KPTLVIAHNKTLAGQLYSELKE 78 (413)
T ss_dssp CCCTTHHHHHHHHHHHHHHTCSEEEEEECTTSCHHHHHH-HHHHHHT-----------CCEEEECSSHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHhcCCCcEEEeCCCCcHHHHHHH-HHHHHhC-----------CCEEEEeCCHHHHHHHHHHHHH
Confidence 366677777776654 4 568999999999997532 3333321 1289999999999999999999
Q ss_pred Hhh
Q psy15524 80 LCK 82 (930)
Q Consensus 80 ~~~ 82 (930)
++.
T Consensus 79 ~l~ 81 (413)
T d1t5la1 79 FFP 81 (413)
T ss_dssp HCT
T ss_pred HcC
Confidence 864
|
| >d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: gamma subunit of DNA polymerase III, N-domain species: Thermotoga maritima [TaxId: 2336]
Probab=92.07 E-value=0.77 Score=42.36 Aligned_cols=42 Identities=12% Similarity=0.227 Sum_probs=29.3
Q ss_pred CCccEEEEcccccccccCcHHHHHHHHHHHhhcCCCceEEEEEeec
Q psy15524 132 SKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATL 177 (930)
Q Consensus 132 ~~l~~vViDE~h~~~~~~~~~~~~~i~~~l~~~~~~~~~i~lSAT~ 177 (930)
..-+.+||||||.|.. .....++..+..-+.+..+++.|..+
T Consensus 78 ~~~KviIId~ad~l~~----~aqNaLLK~LEEPp~~t~fiLit~~~ 119 (198)
T d2gnoa2 78 YTRKYVIVHDCERMTQ----QAANAFLKALEEPPEYAVIVLNTRRW 119 (198)
T ss_dssp SSSEEEEETTGGGBCH----HHHHHTHHHHHSCCTTEEEEEEESCG
T ss_pred CCCEEEEEeCccccch----hhhhHHHHHHhCCCCCceeeeccCCh
Confidence 4568999999999964 33355666666655667777766554
|
| >d1oywa3 c.37.1.19 (A:207-406) RecQ helicase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecQ helicase domain species: Escherichia coli [TaxId: 562]
Probab=92.05 E-value=0.038 Score=51.83 Aligned_cols=50 Identities=10% Similarity=0.238 Sum_probs=39.3
Q ss_pred CCceeEEEEcCcchhHHHHHHHHhhhccccccCCcceEEEEEecccchhhhHHHHhhhh
Q psy15524 275 DSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTKK 333 (930)
Q Consensus 275 ~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~ 333 (930)
+||. |.+++..+|+..|..+|. ...+.++||||+|++.++.++..|...+
T Consensus 5 pNi~--y~v~~~~~k~~~L~~~l~-------~~~~~~~IIF~~t~~~~~~l~~~l~~~~ 54 (200)
T d1oywa3 5 PNIR--YMLMEKFKPLDQLMRYVQ-------EQRGKSGIIYCNSRAKVEDTAARLQSKG 54 (200)
T ss_dssp TTEE--EEEEECSSHHHHHHHHHH-------HTTTCCEEEECSSHHHHHHHHHHHHHTT
T ss_pred CCcE--EEEEcCCcHHHHHHHHHH-------hcCCCCEEEEEeeehhhHHhhhhhccCC
Confidence 4453 444566788999999883 3456789999999999999999998754
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=92.00 E-value=0.19 Score=46.86 Aligned_cols=53 Identities=25% Similarity=0.110 Sum_probs=33.0
Q ss_pred CcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEc--cCHHHHHHHHHHHHHhhc
Q psy15524 430 GDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIIL--PTRELALQTLEIFTKLCK 491 (930)
Q Consensus 430 ~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~--PtreLa~Q~~~~~~~~~~ 491 (930)
+-+++.+|||+|||.+..=-+ .++.. .|.++.+++ ..|.=|.++.+.+.+.++
T Consensus 7 ~vi~lvGptGvGKTTTiaKLA-~~~~~--------~g~kV~lit~Dt~R~gA~eQL~~~a~~l~ 61 (207)
T d1okkd2 7 RVVLVVGVNGVGKTTTIAKLG-RYYQN--------LGKKVMFCAGDTFRAAGGTQLSEWGKRLS 61 (207)
T ss_dssp SEEEEECSTTSSHHHHHHHHH-HHHHT--------TTCCEEEECCCCSSTTHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHH-HHHHH--------CCCcEEEEEeccccccchhhHhhcccccC
Confidence 346789999999999844332 23322 234455554 347777777777666654
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=91.21 E-value=0.31 Score=45.56 Aligned_cols=51 Identities=18% Similarity=0.245 Sum_probs=29.6
Q ss_pred EEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEc-cCHHHHHHHHHHHHHhh
Q psy15524 432 VLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIIL-PTRELALQTLEIFTKLC 490 (930)
Q Consensus 432 ~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~-PtreLa~Q~~~~~~~~~ 490 (930)
+++.+|||+|||.+..--+ .++... +..-+||-+ ..|.=|.++.+.+.+..
T Consensus 14 i~lvGptGvGKTTTiAKLA-a~~~~~-------~~kV~lit~Dt~R~gA~eQL~~~a~~l 65 (213)
T d1vmaa2 14 IMVVGVNGTGKTTSCGKLA-KMFVDE-------GKSVVLAAADTFRAAAIEQLKIWGERV 65 (213)
T ss_dssp EEEECCTTSSHHHHHHHHH-HHHHHT-------TCCEEEEEECTTCHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH-HHHHHC-------CCceEEEeecccccchhHHHHHHhhhc
Confidence 5779999999999844333 333331 122334444 35666666666665544
|
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=90.07 E-value=2.4 Score=40.13 Aligned_cols=39 Identities=13% Similarity=0.306 Sum_probs=23.9
Q ss_pred CCccEEEEcccccccccCcHHHHHHHHHHHhhcCCCceEEEEE
Q psy15524 132 SKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLS 174 (930)
Q Consensus 132 ~~l~~vViDE~h~~~~~~~~~~~~~i~~~l~~~~~~~~~i~lS 174 (930)
...+++||||+|.|.... ...++..+...++.+.+|+.|
T Consensus 114 ~~~kviiIde~d~l~~~~----q~~Llk~lE~~~~~~~~il~t 152 (239)
T d1njfa_ 114 GRFKVYLIDEVHMLSRHS----FNALLKTLEEPPEHVKFLLAT 152 (239)
T ss_dssp SSSEEEEEETGGGSCHHH----HHHHHHHHHSCCTTEEEEEEE
T ss_pred CCCEEEEEECcccCCHHH----HHHHHHHHhcCCCCeEEEEEc
Confidence 356799999999985332 234455555444555555544
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=89.92 E-value=0.27 Score=47.51 Aligned_cols=45 Identities=24% Similarity=0.380 Sum_probs=26.3
Q ss_pred eEEEEecchhhhhcC------cHHHHHHHHHHHhhcCc-cceEEEEccccCH
Q psy15524 544 EHLVLDEADRILDQG------YERDIAEFLEILKKQKP-QFQSILLSATLTP 588 (930)
Q Consensus 544 ~~lVlDEah~l~~~g------~~~~l~~i~~~l~~~~~-~~q~vl~SAT~~~ 588 (930)
.+|++||+|.+.+.. -...+..++..+..... ..+++++-+|-.+
T Consensus 102 ~il~iDEid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~tTn~~ 153 (246)
T d1d2na_ 102 SCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRK 153 (246)
T ss_dssp EEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCH
T ss_pred ceeehhhhhhHhhhcccccchhHHHHHHHHHHhcCCCccccceeeeeccCCh
Confidence 589999999986532 23445555555554322 3355666565433
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.82 E-value=0.63 Score=43.89 Aligned_cols=43 Identities=14% Similarity=0.100 Sum_probs=26.1
Q ss_pred CCCccEEEEcccccccccCcHHHHHHHHHHHhhcCCCceEEEEEeec
Q psy15524 131 FSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATL 177 (930)
Q Consensus 131 l~~l~~vViDE~h~~~~~~~~~~~~~i~~~l~~~~~~~~~i~lSAT~ 177 (930)
...-+++|+||+|.+.+.. ...++..+........+++.+...
T Consensus 99 ~~~~kviiiDe~d~~~~~~----~~~ll~~~e~~~~~~~~i~~~~~~ 141 (224)
T d1sxjb2 99 PGKHKIVILDEADSMTAGA----QQALRRTMELYSNSTRFAFACNQS 141 (224)
T ss_dssp TTCCEEEEEESGGGSCHHH----HHTTHHHHHHTTTTEEEEEEESCG
T ss_pred CcceEEEEEecccccchhH----HHHHhhhccccccceeeeeccCch
Confidence 4556799999999987543 223344444444455566655544
|
| >d1c4oa1 c.37.1.19 (A:2-409) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Nucleotide excision repair enzyme UvrB species: Thermus thermophilus [TaxId: 274]
Probab=88.64 E-value=0.34 Score=50.47 Aligned_cols=66 Identities=30% Similarity=0.394 Sum_probs=46.1
Q ss_pred CCCHHHHHhHHhhh----cCC-cEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHHHH
Q psy15524 414 QVTTVQQLSIQPIL----DGG-DVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTK 488 (930)
Q Consensus 414 ~~~~iQ~~~i~~il----~~~-d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~ 488 (930)
+|+--|-+||..++ .|+ .+.+.+.||||||++ +..+++.. +..+|||+|+.+.|.++++.+..
T Consensus 8 ~p~~dqp~aI~~l~~~L~~g~~~~~L~GlsgS~ka~~-~A~l~~~~-----------~rp~LvVt~~~~~A~~l~~dL~~ 75 (408)
T d1c4oa1 8 SPKGDQPKAIAGLVEALRDGERFVTLLGATGTGKTVT-MAKVIEAL-----------GRPALVLAPNKILAAQLAAEFRE 75 (408)
T ss_dssp CCCTTHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHH-HHHHHHHH-----------TCCEEEEESSHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHhcCCCcEEEecCCCCHHHHH-HHHHHHHh-----------CCCEEEEeCCHHHHHHHHHHHHH
Confidence 34444555666544 344 478899999999975 22233222 23489999999999999999998
Q ss_pred hhc
Q psy15524 489 LCK 491 (930)
Q Consensus 489 ~~~ 491 (930)
++.
T Consensus 76 ~l~ 78 (408)
T d1c4oa1 76 LFP 78 (408)
T ss_dssp HCT
T ss_pred hcC
Confidence 875
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.46 E-value=0.99 Score=42.48 Aligned_cols=18 Identities=28% Similarity=0.414 Sum_probs=15.0
Q ss_pred cEEEEcCCCChHHHHHHH
Q psy15524 22 DVLVRSQTGSGKTLAYAI 39 (930)
Q Consensus 22 ~~lv~apTGsGKT~~~~l 39 (930)
++|++||+|+|||....+
T Consensus 37 ~lLl~Gp~G~GKttl~~~ 54 (227)
T d1sxjc2 37 HLLFYGPPGTGKTSTIVA 54 (227)
T ss_dssp CEEEECSSSSSHHHHHHH
T ss_pred eEEEECCCCCChhHHHHH
Confidence 599999999999975443
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=88.19 E-value=0.74 Score=44.42 Aligned_cols=17 Identities=41% Similarity=0.536 Sum_probs=14.9
Q ss_pred CcEEEEccCCCchhHHh
Q psy15524 430 GDVLVRSQTGSGKTLAY 446 (930)
Q Consensus 430 ~d~lv~a~TGsGKTl~~ 446 (930)
+.+++.+|+|+|||+..
T Consensus 46 ~~iLL~GppGtGKT~la 62 (256)
T d1lv7a_ 46 KGVLMVGPPGTGKTLLA 62 (256)
T ss_dssp CEEEEECCTTSCHHHHH
T ss_pred CeEEeeCCCCCCccHHH
Confidence 56999999999999863
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=88.16 E-value=0.94 Score=41.99 Aligned_cols=54 Identities=19% Similarity=0.230 Sum_probs=32.8
Q ss_pred cCCc-EEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEc--ccHHHHHHHHHHHHHHh
Q psy15524 19 DGGD-VLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIIL--PTRELALQTLEIFTKLC 81 (930)
Q Consensus 19 ~g~~-~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~--P~~~L~~q~~~~~~~~~ 81 (930)
..++ +++++|||+|||....--+.. +... +.++.+++ ..|.=+.+|.+.+.+..
T Consensus 8 ~~~~vi~lvGp~GvGKTTTiaKLA~~-~~~~--------g~kV~lit~Dt~R~gA~eQL~~~a~~l 64 (207)
T d1ls1a2 8 KDRNLWFLVGLQGSGKTTTAAKLALY-YKGK--------GRRPLLVAADTQRPAAREQLRLLGEKV 64 (207)
T ss_dssp CSSEEEEEECCTTTTHHHHHHHHHHH-HHHT--------TCCEEEEECCSSCHHHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHH-HHHC--------CCcEEEEecccccchHHHHHHHHHHhc
Confidence 3445 466999999999875544433 3221 23355555 35777777766666554
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=88.05 E-value=0.84 Score=43.79 Aligned_cols=18 Identities=33% Similarity=0.344 Sum_probs=15.3
Q ss_pred CcEEEEcCCCChHHHHHH
Q psy15524 21 GDVLVRSQTGSGKTLAYA 38 (930)
Q Consensus 21 ~~~lv~apTGsGKT~~~~ 38 (930)
+.+|+.||+|+|||...-
T Consensus 43 ~giLl~GppGtGKT~la~ 60 (247)
T d1ixza_ 43 KGVLLVGPPGVGKTHLAR 60 (247)
T ss_dssp SEEEEECCTTSSHHHHHH
T ss_pred ceEEEecCCCCChhHHHH
Confidence 469999999999998643
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.89 E-value=0.4 Score=45.73 Aligned_cols=27 Identities=22% Similarity=0.319 Sum_probs=18.8
Q ss_pred HHHHHhhcC---CcEEEEcCCCChHHHHHH
Q psy15524 12 LSIQPILDG---GDVLVRSQTGSGKTLAYA 38 (930)
Q Consensus 12 ~ai~~~~~g---~~~lv~apTGsGKT~~~~ 38 (930)
+.+..++++ .+++++||+|+|||....
T Consensus 22 ~~l~~~i~~~~~~~lll~Gp~G~GKTtl~~ 51 (237)
T d1sxjd2 22 TVLKKTLKSANLPHMLFYGPPGTGKTSTIL 51 (237)
T ss_dssp HHHHHHTTCTTCCCEEEECSTTSSHHHHHH
T ss_pred HHHHHHHHcCCCCeEEEECCCCCChHHHHH
Confidence 444444433 359999999999997533
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=87.68 E-value=3.7 Score=37.79 Aligned_cols=50 Identities=16% Similarity=0.199 Sum_probs=24.4
Q ss_pred EEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEE-EEEcc-cHHHHHHHHHHHHHHh
Q psy15524 23 VLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYA-VIILP-TRELALQTLEIFTKLC 81 (930)
Q Consensus 23 ~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~-lvl~P-~~~L~~q~~~~~~~~~ 81 (930)
+++++|||+|||....--+. ++... +.++ ++-+- .|.=+.+|.+.+.+..
T Consensus 15 i~lvGptGvGKTTTiAKLA~-~~~~~--------g~kV~lit~Dt~R~ga~eQL~~~a~~l 66 (211)
T d1j8yf2 15 IMLVGVQGTGKATTAGKLAY-FYKKK--------GFKVGLVGADVYRPAALEQLQQLGQQI 66 (211)
T ss_dssp EEEECSCCC----HHHHHHH-HHHHT--------TCCEEEEECCCSSHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH-HHHHC--------CCceEEEEeeccccchhHHHHHhcccc
Confidence 56689999999998654443 33221 2224 44443 3555555555554443
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=87.56 E-value=0.25 Score=51.58 Aligned_cols=37 Identities=24% Similarity=0.361 Sum_probs=24.6
Q ss_pred HHHHHhHHhhhcCCc--EEEEccCCCchhHHhhHHHHHHH
Q psy15524 417 TVQQLSIQPILDGGD--VLVRSQTGSGKTLAYAIPIIQKL 454 (930)
Q Consensus 417 ~iQ~~~i~~il~~~d--~lv~a~TGsGKTl~~~lp~l~~l 454 (930)
+.|.+.+..++.... +++.+|||||||.+ +..+++.+
T Consensus 144 ~~~~~~l~~l~~~~~GliLvtGpTGSGKSTT-l~~~l~~~ 182 (401)
T d1p9ra_ 144 AHNHDNFRRLIKRPHGIILVTGPTGSGKSTT-LYAGLQEL 182 (401)
T ss_dssp HHHHHHHHHHHTSSSEEEEEECSTTSCHHHH-HHHHHHHH
T ss_pred HHHHHHHHHHHhhhhceEEEEcCCCCCccHH-HHHHhhhh
Confidence 334444445554443 88999999999987 45556555
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=87.26 E-value=0.18 Score=50.85 Aligned_cols=51 Identities=29% Similarity=0.289 Sum_probs=34.0
Q ss_pred HHHHHHHH-hhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHH
Q psy15524 9 VQQLSIQP-ILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTREL 69 (930)
Q Consensus 9 ~Q~~ai~~-~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L 69 (930)
.+...+.. +..++|++|++|||||||.. +-+++..+ .+..+++.+--+.||
T Consensus 154 ~~~~~l~~~v~~~~nili~G~tgSGKTT~-l~al~~~i---------~~~~rivtiEd~~El 205 (323)
T d1g6oa_ 154 QAISAIKDGIAIGKNVIVCGGTGSGKTTY-IKSIMEFI---------PKEERIISIEDTEEI 205 (323)
T ss_dssp HHHHHHHHHHHHTCCEEEEESTTSSHHHH-HHHHGGGS---------CTTCCEEEEESSCCC
T ss_pred HHHHHHHHHHHhCCCEEEEeeccccchHH-HHHHhhhc---------ccccceeeccchhhh
Confidence 33444443 45788999999999999984 34444332 224458888888886
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.14 E-value=0.49 Score=45.53 Aligned_cols=39 Identities=13% Similarity=0.322 Sum_probs=23.1
Q ss_pred CCccEEEEcccccccccCcHHHHHHHHHHHhhcCCCceEEEEE
Q psy15524 132 SKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLS 174 (930)
Q Consensus 132 ~~l~~vViDE~h~~~~~~~~~~~~~i~~~l~~~~~~~~~i~lS 174 (930)
.....+||||+|.+.... ...+...+.....++.+|+.+
T Consensus 130 ~~~~iiiide~d~l~~~~----~~~l~~~~e~~~~~~~~Il~t 168 (252)
T d1sxje2 130 HRYKCVIINEANSLTKDA----QAALRRTMEKYSKNIRLIMVC 168 (252)
T ss_dssp -CCEEEEEECTTSSCHHH----HHHHHHHHHHSTTTEEEEEEE
T ss_pred CCceEEEecccccccccc----chhhhcccccccccccceeee
Confidence 456799999999985432 233444444444555666544
|
| >d1c4oa2 c.37.1.19 (A:410-583) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Nucleotide excision repair enzyme UvrB species: Thermus thermophilus [TaxId: 274]
Probab=87.12 E-value=1.2 Score=39.73 Aligned_cols=76 Identities=17% Similarity=0.142 Sum_probs=57.7
Q ss_pred CeEEEEEcccHHHHHHHHHHHHHHhhhcCCceeEEeeCCCchHHHHHH----hcCCCcEEEEChHHHHHHHhcCCCccCC
Q psy15524 57 GIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKAR----IRKGISILVATPGRLLDHCKHTETLKFS 132 (930)
Q Consensus 57 ~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~----l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~ 132 (930)
+.++||.++++.-+..+.+.|.+.+ +....+.|+.+..+.... ..+..+|||+|. .+ ...++..
T Consensus 31 g~r~lvfc~t~~~~~~l~~~L~~~G-----i~a~~~Hg~~~~~eR~~~l~~F~~G~~~vLVaT~-----v~--~~GiDip 98 (174)
T d1c4oa2 31 GERTLVTVLTVRMAEELTSFLVEHG-----IRARYLHHELDAFKRQALIRDLRLGHYDCLVGIN-----LL--REGLDIP 98 (174)
T ss_dssp TCEEEEECSSHHHHHHHHHHHHHTT-----CCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESC-----CC--CTTCCCT
T ss_pred CCcEEEEEcchhHHHHHHHHHHhcC-----CceEEEecccchHHHHHHHHHHHCCCeEEEEeee-----ee--eeeccCC
Confidence 6679999999999999999888754 667778888765444332 235599999993 22 3678899
Q ss_pred CccEEEEccccc
Q psy15524 133 KVEHLVLDEADR 144 (930)
Q Consensus 133 ~l~~vViDE~h~ 144 (930)
++++||+=.++.
T Consensus 99 ~V~~Vi~~~~~~ 110 (174)
T d1c4oa2 99 EVSLVAILDADK 110 (174)
T ss_dssp TEEEEEETTTTS
T ss_pred CCcEEEEecccc
Confidence 999999866664
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=86.68 E-value=2.1 Score=40.20 Aligned_cols=19 Identities=32% Similarity=0.338 Sum_probs=15.8
Q ss_pred CcEEEEcCCCChHHHHHHH
Q psy15524 21 GDVLVRSQTGSGKTLAYAI 39 (930)
Q Consensus 21 ~~~lv~apTGsGKT~~~~l 39 (930)
.++|++||+|+|||.+.-.
T Consensus 46 ~~lll~Gp~G~GKTtla~~ 64 (231)
T d1iqpa2 46 PHLLFAGPPGVGKTTAALA 64 (231)
T ss_dssp CEEEEESCTTSSHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHH
Confidence 4799999999999986443
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=86.02 E-value=0.88 Score=42.15 Aligned_cols=52 Identities=25% Similarity=0.087 Sum_probs=32.6
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEc--ccHHHHHHHHHHHHHHh
Q psy15524 21 GDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIIL--PTRELALQTLEIFTKLC 81 (930)
Q Consensus 21 ~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~--P~~~L~~q~~~~~~~~~ 81 (930)
+-+++++|||+|||....--+. ++.. .+.++.+++ ..|.=+.+|.+.+.+..
T Consensus 7 ~vi~lvGptGvGKTTTiaKLA~-~~~~--------~g~kV~lit~Dt~R~gA~eQL~~~a~~l 60 (207)
T d1okkd2 7 RVVLVVGVNGVGKTTTIAKLGR-YYQN--------LGKKVMFCAGDTFRAAGGTQLSEWGKRL 60 (207)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH-HHHT--------TTCCEEEECCCCSSTTHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH-HHHH--------CCCcEEEEEeccccccchhhHhhccccc
Confidence 3478899999999998655443 3322 123355555 34677777777666654
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=85.95 E-value=0.24 Score=49.75 Aligned_cols=18 Identities=33% Similarity=0.383 Sum_probs=15.8
Q ss_pred CCcEEEEccCCCchhHHh
Q psy15524 429 GGDVLVRSQTGSGKTLAY 446 (930)
Q Consensus 429 ~~d~lv~a~TGsGKTl~~ 446 (930)
.+.+++.+|||+|||+.+
T Consensus 49 ~~~iLl~GPpG~GKT~lA 66 (309)
T d1ofha_ 49 PKNILMIGPTGVGKTEIA 66 (309)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 477999999999999864
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=85.75 E-value=0.55 Score=45.43 Aligned_cols=18 Identities=39% Similarity=0.499 Sum_probs=15.4
Q ss_pred CcEEEEcCCCChHHHHHH
Q psy15524 21 GDVLVRSQTGSGKTLAYA 38 (930)
Q Consensus 21 ~~~lv~apTGsGKT~~~~ 38 (930)
+.+|+.+|+|+|||...-
T Consensus 46 ~~iLL~GppGtGKT~la~ 63 (256)
T d1lv7a_ 46 KGVLMVGPPGTGKTLLAK 63 (256)
T ss_dssp CEEEEECCTTSCHHHHHH
T ss_pred CeEEeeCCCCCCccHHHH
Confidence 569999999999998643
|
| >d1jr6a_ c.37.1.14 (A:) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Probab=85.73 E-value=0.13 Score=44.69 Aligned_cols=28 Identities=14% Similarity=0.125 Sum_probs=24.4
Q ss_pred CCcceEEEEEecccchhhhHHHHhhhhh
Q psy15524 307 DEESKMLVFMATQDMADYHTELLSTKKK 334 (930)
Q Consensus 307 ~~~~~~iVF~~s~~~~~~l~~~L~~~~~ 334 (930)
..++++||||+|+++|+.+++.|+..|.
T Consensus 33 ~~~~k~IVFc~t~~~ae~la~~L~~~G~ 60 (138)
T d1jr6a_ 33 IKGGRHLIFCHSKKKCDELAAKLVALGI 60 (138)
T ss_dssp HTTSCEEEECSCHHHHHHHHHHHHHHTC
T ss_pred cCCCCEEEEeCcHHHHHHHHHHHhcccc
Confidence 3567999999999999999999987763
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=84.74 E-value=0.58 Score=43.50 Aligned_cols=49 Identities=20% Similarity=0.330 Sum_probs=28.8
Q ss_pred EEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEc-cc-HHHHHHHHHHHHHH
Q psy15524 23 VLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIIL-PT-RELALQTLEIFTKL 80 (930)
Q Consensus 23 ~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~-P~-~~L~~q~~~~~~~~ 80 (930)
+++++|||+|||....--+. ++... +.++.+++ -| |.=+.+|.+.+.+.
T Consensus 12 i~lvGptGvGKTTTiAKLA~-~~~~~--------g~kV~lit~Dt~R~gA~eQL~~~a~~ 62 (211)
T d2qy9a2 12 ILMVGVNGVGKTTTIGKLAR-QFEQQ--------GKSVMLAAGDTFRAAAVEQLQVWGQR 62 (211)
T ss_dssp EEEECCTTSCHHHHHHHHHH-HHHTT--------TCCEEEECCCTTCHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH-HHHHC--------CCcEEEEecccccccchhhhhhhhhh
Confidence 56799999999998665443 33221 22355554 33 55566555555444
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=84.64 E-value=3.1 Score=39.75 Aligned_cols=24 Identities=17% Similarity=0.289 Sum_probs=17.8
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHH
Q psy15524 21 GDVLVRSQTGSGKTLAYAIPIIQKL 45 (930)
Q Consensus 21 ~~~lv~apTGsGKT~~~~l~~l~~l 45 (930)
.++++.||+|+|||.+.- .+...+
T Consensus 44 ~~lll~GppGtGKT~l~~-~l~~~l 67 (276)
T d1fnna2 44 PRATLLGRPGTGKTVTLR-KLWELY 67 (276)
T ss_dssp CEEEEECCTTSSHHHHHH-HHHHHH
T ss_pred CceEEECCCCCCHHHHHH-HHHHHH
Confidence 579999999999997643 344444
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=84.60 E-value=0.17 Score=51.17 Aligned_cols=53 Identities=26% Similarity=0.224 Sum_probs=34.9
Q ss_pred HHHHHhHHhh-hcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHH
Q psy15524 417 TVQQLSIQPI-LDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELA 479 (930)
Q Consensus 417 ~iQ~~~i~~i-l~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa 479 (930)
+-+...+..+ ..+++++++++||||||.. +-.++..+ .+..+++.+--+.||.
T Consensus 153 ~~~~~~l~~~v~~~~nili~G~tgSGKTT~-l~al~~~i---------~~~~rivtiEd~~El~ 206 (323)
T d1g6oa_ 153 EQAISAIKDGIAIGKNVIVCGGTGSGKTTY-IKSIMEFI---------PKEERIISIEDTEEIV 206 (323)
T ss_dssp HHHHHHHHHHHHHTCCEEEEESTTSSHHHH-HHHHGGGS---------CTTCCEEEEESSCCCC
T ss_pred HHHHHHHHHHHHhCCCEEEEeeccccchHH-HHHHhhhc---------ccccceeeccchhhhh
Confidence 4444444443 3578999999999999975 33333221 2356788888888873
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=84.17 E-value=1.5 Score=40.60 Aligned_cols=49 Identities=20% Similarity=0.272 Sum_probs=28.4
Q ss_pred EEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEE-EEEcc-cHHHHHHHHHHHHHH
Q psy15524 23 VLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYA-VIILP-TRELALQTLEIFTKL 80 (930)
Q Consensus 23 ~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~-lvl~P-~~~L~~q~~~~~~~~ 80 (930)
+++++|||+|||....--+.. +... +.++ |+-+- .|.=+.+|.+.+.+.
T Consensus 14 i~lvGptGvGKTTTiAKLAa~-~~~~--------~~kV~lit~Dt~R~gA~eQL~~~a~~ 64 (213)
T d1vmaa2 14 IMVVGVNGTGKTTSCGKLAKM-FVDE--------GKSVVLAAADTFRAAAIEQLKIWGER 64 (213)
T ss_dssp EEEECCTTSSHHHHHHHHHHH-HHHT--------TCCEEEEEECTTCHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH-HHHC--------CCceEEEeecccccchhHHHHHHhhh
Confidence 677999999999986544433 3321 1224 44444 455566555555444
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=83.67 E-value=0.22 Score=52.66 Aligned_cols=19 Identities=32% Similarity=0.352 Sum_probs=16.3
Q ss_pred CCcEEEEcCCCChHHHHHH
Q psy15524 20 GGDVLVRSQTGSGKTLAYA 38 (930)
Q Consensus 20 g~~~lv~apTGsGKT~~~~ 38 (930)
.+|+|+.+|||+|||+.+-
T Consensus 49 ksNILliGPTGvGKTlLAr 67 (443)
T d1g41a_ 49 PKNILMIGPTGVGKTEIAR 67 (443)
T ss_dssp CCCEEEECCTTSSHHHHHH
T ss_pred cccEEEECCCCCCHHHHHH
Confidence 4699999999999999643
|
| >d1xbta1 c.37.1.24 (A:18-150) Thymidine kinase, TK1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Type II thymidine kinase domain: Thymidine kinase, TK1, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.58 E-value=1.8 Score=36.81 Aligned_cols=36 Identities=14% Similarity=0.173 Sum_probs=25.7
Q ss_pred EEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCH
Q psy15524 432 VLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTR 476 (930)
Q Consensus 432 ~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~Ptr 476 (930)
-++.+|..||||.- ++-.+.+... .|.+++++-|..
T Consensus 5 ~li~GpMfsGKTt~-Li~~~~~~~~--------~g~~v~~ikp~~ 40 (133)
T d1xbta1 5 QVILGPMFSGKSTE-LMRRVRRFQI--------AQYKCLVIKYAK 40 (133)
T ss_dssp EEEECCTTSCHHHH-HHHHHHHHHT--------TTCCEEEEEETT
T ss_pred EEEEecccCHHHHH-HHHHHHHHHH--------cCCcEEEEeccc
Confidence 46789999999985 5555544432 366799998863
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=83.52 E-value=0.28 Score=49.27 Aligned_cols=19 Identities=32% Similarity=0.352 Sum_probs=16.5
Q ss_pred CCcEEEEcCCCChHHHHHH
Q psy15524 20 GGDVLVRSQTGSGKTLAYA 38 (930)
Q Consensus 20 g~~~lv~apTGsGKT~~~~ 38 (930)
.+++|+++|||+|||+.+-
T Consensus 49 ~~~iLl~GPpG~GKT~lAk 67 (309)
T d1ofha_ 49 PKNILMIGPTGVGKTEIAR 67 (309)
T ss_dssp CCCEEEECCTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 4789999999999999653
|
| >d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Bacterial conjugative coupling protein TrwB species: Escherichia coli [TaxId: 562]
Probab=83.48 E-value=0.49 Score=49.92 Aligned_cols=45 Identities=22% Similarity=0.268 Sum_probs=32.2
Q ss_pred hcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHH
Q psy15524 427 LDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELAL 480 (930)
Q Consensus 427 l~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~ 480 (930)
...++++|.|+||||||.+. ..++..+.. .|..++|+=|.-++..
T Consensus 48 ~~~~H~~I~G~tGsGKT~~l-~~li~~~~~--------~g~~~iiiD~kge~~~ 92 (433)
T d1e9ra_ 48 AEPRHLLVNGATGTGKSVLL-RELAYTGLL--------RGDRMVIVDPNGDMLS 92 (433)
T ss_dssp GGGGCEEEEECTTSSHHHHH-HHHHHHHHH--------TTCEEEEEEETTHHHH
T ss_pred cccceEEEEeCCCCcHHHHH-HHHHHHHHh--------CCCCEEEEeCChhHHH
Confidence 44578999999999999764 444444443 2566888899887643
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=83.38 E-value=1.1 Score=43.68 Aligned_cols=149 Identities=15% Similarity=0.079 Sum_probs=66.2
Q ss_pred hcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHHhhhcCCceeEEe----e
Q psy15524 18 LDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWL----T 93 (930)
Q Consensus 18 ~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~----~ 93 (930)
..|.=+++.|+||+|||...+-.+.+.... .+.++++++.... ..++..++............... .
T Consensus 33 ~~G~l~vi~G~~G~GKT~~~~~la~~~a~~--------~g~~v~~~s~E~~-~~~~~~r~~~~~~~~~~~~~~~~~~~~~ 103 (277)
T d1cr2a_ 33 RGGEVIMVTSGSGMGKSTFVRQQALQWGTA--------MGKKVGLAMLEES-VEETAEDLIGLHNRVRLRQSDSLKREII 103 (277)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHHHHHHHT--------SCCCEEEEESSSC-HHHHHHHHHHHHTTCCGGGCHHHHHHHH
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHhhhhh--------cccceeEeeeccc-hhhHHhHHHHHhhcCCchhhcccccchh
Confidence 345668999999999996544333333221 2445888885533 33334443333222110000000 0
Q ss_pred CCCchHHHHHHhcCCCcEE------EEChHHHHHHHhcCCCccCCCccEEEEcccccccccC----cHHHHHHHHHHHhh
Q psy15524 94 GGEKMKSEKARIRKGISIL------VATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQG----YERDIAEFLEILKK 163 (930)
Q Consensus 94 g~~~~~~~~~~l~~~~~Il------v~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~----~~~~~~~i~~~l~~ 163 (930)
...........+.....+. -.++..+...+.. ...-.++++||||=.+.+.... ....+..+...++.
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~vvID~l~~l~~~~~~~~~~~~~~~~~~~l~~ 181 (277)
T d1cr2a_ 104 ENGKFDQWFDELFGNDTFHLYDSFAEAETDRLLAKLAY--MRSGLGCDVIILDHISIVVSASGESDERKMIDNLMTKLKG 181 (277)
T ss_dssp HTSHHHHHHHHHHSSSCEEEECCC-CCCHHHHHHHHHH--HHHTTCCSEEEEEEEEC----------CHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHhhccceeeeeccccchhHHHHHHHhhh--hhhccCcceEEEcccccccccccccchhHHHHHHHHHHHH
Confidence 0001111112222221121 2234444443321 1123468899999998775332 22345555555553
Q ss_pred cC--CCceEEEEEeec
Q psy15524 164 QK--PQFQSILLSATL 177 (930)
Q Consensus 164 ~~--~~~~~i~lSAT~ 177 (930)
.. .++.+++++-+-
T Consensus 182 lA~~~~i~vi~~~q~~ 197 (277)
T d1cr2a_ 182 FAKSTGVVLVVICHLK 197 (277)
T ss_dssp HHHHHCCEEEEEEECC
T ss_pred Hhhhccccceeecccc
Confidence 22 345666665543
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=82.99 E-value=0.57 Score=48.69 Aligned_cols=40 Identities=25% Similarity=0.374 Sum_probs=30.8
Q ss_pred CcHHHHHHHHHhhcCCc--EEEEcCCCChHHHHHHHHHHHHHH
Q psy15524 6 VTTVQQLSIQPILDGGD--VLVRSQTGSGKTLAYAIPIIQKLQ 46 (930)
Q Consensus 6 l~~~Q~~ai~~~~~g~~--~lv~apTGsGKT~~~~l~~l~~l~ 46 (930)
+.+.|.+.+..++.... +|+++|||||||.. +..+++.+.
T Consensus 142 ~~~~~~~~l~~l~~~~~GliLvtGpTGSGKSTT-l~~~l~~~~ 183 (401)
T d1p9ra_ 142 MTAHNHDNFRRLIKRPHGIILVTGPTGSGKSTT-LYAGLQELN 183 (401)
T ss_dssp CCHHHHHHHHHHHTSSSEEEEEECSTTSCHHHH-HHHHHHHHC
T ss_pred ccHHHHHHHHHHHhhhhceEEEEcCCCCCccHH-HHHHhhhhc
Confidence 57888888988876554 99999999999986 444556553
|
| >d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: NTPase P4 species: Bacteriophage phi-12 [TaxId: 161736]
Probab=82.95 E-value=0.15 Score=51.10 Aligned_cols=44 Identities=9% Similarity=0.203 Sum_probs=26.1
Q ss_pred eEEEEecchhhhhcC--------cHHHHHHHHHHHhhcCccceEEEEccccC
Q psy15524 544 EHLVLDEADRILDQG--------YERDIAEFLEILKKQKPQFQSILLSATLT 587 (930)
Q Consensus 544 ~~lVlDEah~l~~~g--------~~~~l~~i~~~l~~~~~~~q~vl~SAT~~ 587 (930)
.+|++||+|.+...+ -...+..++..+........++.+-||-+
T Consensus 184 ~ilf~DEid~~~~~r~~~~~~~~~~r~v~~lL~e~dg~~~~~~v~viaatN~ 235 (321)
T d1w44a_ 184 RVIVIDSLKNVIGAAGGNTTSGGISRGAFDLLSDIGAMAASRGCVVIASLNP 235 (321)
T ss_dssp SEEEEECCTTTC-----------CCHHHHHHHHHHHHHHHHHTCEEEEECCC
T ss_pred cEEEeehhhhhccccccCCCCCcchhhhhhhhhhccccccCCCeEEEEeCCC
Confidence 489999999986322 12455566555543222345677778865
|
| >d1t5la2 c.37.1.19 (A:415-595) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Nucleotide excision repair enzyme UvrB species: Bacillus caldotenax [TaxId: 1395]
Probab=81.65 E-value=2.5 Score=38.02 Aligned_cols=77 Identities=17% Similarity=0.160 Sum_probs=58.4
Q ss_pred CeEEEEEcccHHHHHHHHHHHHHHhhhcCCceeEEeeCCCchHHHHHHh----cCCCcEEEEChHHHHHHHhcCCCccCC
Q psy15524 57 GIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARI----RKGISILVATPGRLLDHCKHTETLKFS 132 (930)
Q Consensus 57 ~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l----~~~~~Ilv~Tp~~l~~~l~~~~~~~l~ 132 (930)
+.+++|.+++++-+..+...+++.+ +.+..+.|+.+..+....+ .+..+|||||. .+ ...++..
T Consensus 31 ~~~~iif~~~~~~~~~~~~~l~~~g-----~~~~~~hg~~~~~eR~~~l~~Fr~g~~~vLVaTd-----v~--~rGiDip 98 (181)
T d1t5la2 31 NERTLVTTLTKKMAEDLTDYLKEAG-----IKVAYLHSEIKTLERIEIIRDLRLGKYDVLVGIN-----LL--REGLDIP 98 (181)
T ss_dssp TCEEEEECSSHHHHHHHHHHHHTTT-----CCEEEECSSCCHHHHHHHHHHHHHTSCSEEEESC-----CC--SSSCCCT
T ss_pred CCeEEEEeehhhhhHHHHHHHHhCC-----cceeEecCCccHHHHHHHHHHHHCCCCCEEEehh-----HH--HccCCCC
Confidence 4579999999999998888887653 6677788887755444333 35699999993 22 3678899
Q ss_pred CccEEEEcccccc
Q psy15524 133 KVEHLVLDEADRI 145 (930)
Q Consensus 133 ~l~~vViDE~h~~ 145 (930)
++++||.-++...
T Consensus 99 ~v~~VI~~d~p~~ 111 (181)
T d1t5la2 99 EVSLVAILDADKE 111 (181)
T ss_dssp TEEEEEETTTTSC
T ss_pred CCCEEEEecCCcc
Confidence 9999999888753
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=81.46 E-value=0.29 Score=51.66 Aligned_cols=17 Identities=35% Similarity=0.448 Sum_probs=15.3
Q ss_pred CCcEEEEccCCCchhHH
Q psy15524 429 GGDVLVRSQTGSGKTLA 445 (930)
Q Consensus 429 ~~d~lv~a~TGsGKTl~ 445 (930)
.+|+++.+|||+|||+.
T Consensus 49 ksNILliGPTGvGKTlL 65 (443)
T d1g41a_ 49 PKNILMIGPTGVGKTEI 65 (443)
T ss_dssp CCCEEEECCTTSSHHHH
T ss_pred cccEEEECCCCCCHHHH
Confidence 46899999999999985
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=80.98 E-value=3 Score=39.21 Aligned_cols=43 Identities=19% Similarity=0.221 Sum_probs=28.4
Q ss_pred HHHhhc-----CCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcc
Q psy15524 14 IQPILD-----GGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILP 65 (930)
Q Consensus 14 i~~~~~-----g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P 65 (930)
++.++. |.-+++.+|+|+|||...+--+.+.+. .+..+++++-
T Consensus 15 LD~~l~GGi~~gsl~li~G~pGsGKT~l~~qia~~~~~---------~~~~~~~is~ 62 (242)
T d1tf7a2 15 LDEMCGGGFFKDSIILATGATGTGKTLLVSRFVENACA---------NKERAILFAY 62 (242)
T ss_dssp HHHHTTSSEESSCEEEEEECTTSSHHHHHHHHHHHHHT---------TTCCEEEEES
T ss_pred HHHhhcCCCcCCeEEEEEeCCCCCHHHHHHHHHHHHHH---------hccccceeec
Confidence 455554 456999999999999875555544332 2445777764
|
| >d1gkub2 c.37.1.16 (B:251-498) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Helicase-like "domain" of reverse gyrase domain: Helicase-like "domain" of reverse gyrase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=80.31 E-value=0.27 Score=47.61 Aligned_cols=38 Identities=16% Similarity=0.155 Sum_probs=31.4
Q ss_pred cchhHHHHHHHHhhhccccccCCcceEEEEEecccchhhhHHHHhh
Q psy15524 286 PKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLST 331 (930)
Q Consensus 286 ~~~k~~~l~~~l~~~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~ 331 (930)
+++|+..|..+|. ..+.++||||+|++.|+.++.+|+.
T Consensus 10 ~~~~~~~l~~~l~--------~~~~~~iif~~~~~~~~~l~~~l~~ 47 (248)
T d1gkub2 10 NDESISTLSSILE--------KLGTGGIIYARTGEEAEEIYESLKN 47 (248)
T ss_dssp SCCCTTTTHHHHT--------TSCSCEEEEESSHHHHHHHHHTTTT
T ss_pred CchHHHHHHHHHH--------HhCCCEEEEECCHHHHHHHHHHHHH
Confidence 5678888888882 2356899999999999999999963
|
| >d1c4oa1 c.37.1.19 (A:2-409) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Nucleotide excision repair enzyme UvrB species: Thermus thermophilus [TaxId: 274]
Probab=80.16 E-value=0.98 Score=46.76 Aligned_cols=66 Identities=30% Similarity=0.395 Sum_probs=46.5
Q ss_pred cCcHHHHHHHHHhh----cCCc-EEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHH
Q psy15524 5 QVTTVQQLSIQPIL----DGGD-VLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTK 79 (930)
Q Consensus 5 ~l~~~Q~~ai~~~~----~g~~-~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~ 79 (930)
+|+.-|-+||..+. .|.. +.+.+-+||+|+++.. .+..... ..+|||+|+...|.++++.+..
T Consensus 8 ~p~~dqp~aI~~l~~~L~~g~~~~~L~GlsgS~ka~~~A-~l~~~~~-----------rp~LvVt~~~~~A~~l~~dL~~ 75 (408)
T d1c4oa1 8 SPKGDQPKAIAGLVEALRDGERFVTLLGATGTGKTVTMA-KVIEALG-----------RPALVLAPNKILAAQLAAEFRE 75 (408)
T ss_dssp CCCTTHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHH-HHHHHHT-----------CCEEEEESSHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHH-HHHHHhC-----------CCEEEEeCCHHHHHHHHHHHHH
Confidence 34555666776654 4544 7889999999997422 2222221 1289999999999999999998
Q ss_pred Hhh
Q psy15524 80 LCK 82 (930)
Q Consensus 80 ~~~ 82 (930)
+..
T Consensus 76 ~l~ 78 (408)
T d1c4oa1 76 LFP 78 (408)
T ss_dssp HCT
T ss_pred hcC
Confidence 864
|