Psyllid ID: psy15540

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80-------
Protein Sequence
MGTILGWTSPAGDRLIAGEYPFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSVSRHGSIH
Secondary Structure (PSIPRED)
ccccEEEHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHcccc
Secondary Structure Prediction (SSPRO)
cccEEccccccHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHcccccc
Coil and Loop (DISEMBL)
mgtilgwtspagdrliageypfpvtesdlsfigssmalgavfgspvvgnlvdtvgrknTMLLLAVPTLVGWGLIIWSQsvsrhgsih
Flexible Loop (DISEMBL)
mgtilgwtspagdrLIAGEYPFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSVSRHGSIH
Low Complexity Region (SEG)
MGTILGWTSPAGDRLIAGEYPFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSVSRHGSIH
Disordered region (IsUnstruct)
***ILGWTSPAGDRLIAGEYPFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQ*********
Disordered Region (DISOPRED)
MGTILGWTSPAGDRLIAGEYPFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSVSRHGSIH
Disordered Region (DISEMBL)
MGTILGWTSPAGDRLIAGEYPFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQS********
Disordered Region (DISPRO)
MGTILGWTSPAGDRLIAGEYPFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSVSR*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiHHHHHHHHHHHHHHHHHHHHooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MGTILGWTSPAGDRLIAGEYPFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSVSRHGSIH
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	87	2.2.26 [Sep-21-2011]
Q8GXK5	482	Sugar transporter ERD6-li	yes	N/A	0.885	0.159	0.3	0.0001
A9ZSY3	505	Facilitated trehalose tra	N/A	N/A	0.758	0.130	0.362	0.0003

>sp|Q8GXK5|EDL14_ARATH Sugar transporter ERD6-like 14 OS=Arabidopsis thaliana GN=At4g04750 PE=2 SV=2

 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/80 (30%), Positives = 44/80 (55%), Gaps = 3/80 (3%)

Query: 1   MGTILGWTSPAGDRLIAGEYPFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTM 60
            G I+G+T+P    ++       ++ +D SF GS + +G + G+ + G L D VGR  T+
Sbjct: 50  FGCIVGYTAPTQSSIMK---DLNLSIADFSFFGSILTVGLILGALICGKLADLVGRVYTI 106

Query: 61  LLLAVPTLVGWGLIIWSQSV 80
            +  +  L+GW  I +++ V
Sbjct: 107 WITNILVLIGWLAIAFAKDV 126

Sugar transporter.
Arabidopsis thaliana (taxid: 3702)

>sp|A9ZSY3|TRET1_BOMMO Facilitated trehalose transporter Tret1 OS=Bombyx mori GN=Tret1 PE=1 SV=1

 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 42/69 (60%), Gaps = 3/69 (4%)

Query: 6   GWTSPAGDRLIAGEYPFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAV 65
           G+TSPA   ++       +T+ +++++G  M L A+ G  V G L++ +GRK T++  AV
Sbjct: 70  GYTSPA---VLTMNITLDITKEEITWVGGLMPLAALVGGIVGGPLIEYLGRKKTIMGTAV 126

Query: 66  PTLVGWGLI 74
           P  +GW LI
Sbjct: 127 PFTIGWMLI 135

High-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph.

Bombyx mori (taxid: 7091)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	87
328696470	508	PREDICTED: facilitated trehalose transpo	0.931	0.159	0.530	8e-19
193575619	489	PREDICTED: facilitated trehalose transpo	0.919	0.163	0.525	3e-18
289742799	479	solute carrier family 2 [Glossina morsit	0.919	0.167	0.562	6e-18
251736857	489	sugar transporter 1 [Sitobion avenae]	0.919	0.163	0.5	2e-17
193596719	528	PREDICTED: facilitated trehalose transpo	0.919	0.151	0.512	6e-17
195428086	552	GK17357 [Drosophila willistoni] gi|19415	0.908	0.143	0.437	5e-12
195166725	467	GL22895 [Drosophila persimilis] gi|19410	0.896	0.167	0.475	1e-11
198466442	549	GA23919 [Drosophila pseudoobscura pseudo	0.896	0.142	0.475	1e-11
24663515	471	CG10960, isoform A [Drosophila melanogas	0.908	0.167	0.456	4e-11
24663511	539	CG10960, isoform B [Drosophila melanogas	0.908	0.146	0.456	4e-11

>gi|328696470|ref|XP_001943804.2| PREDICTED: facilitated trehalose transporter Tret1-like [Acyrthosiphon pisum]

 Score = 97.4 bits (241), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 43/81 (53%), Positives = 61/81 (75%)

Query: 1   MGTILGWTSPAGDRLIAGEYPFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTM 60
           MGT LGWTSPAG  +  G+Y FP+T+ D+S+I S M LGA+ G P +G LV+ +GRK+ M
Sbjct: 81  MGTTLGWTSPAGPMMAHGQYGFPITDDDISWIASCMPLGAMLGCPFMGGLVNKLGRKSLM 140

Query: 61  LLLAVPTLVGWGLIIWSQSVS 81
           ++L +P L+GW +IIW+ SV+
Sbjct: 141 IMLTIPALLGWAMIIWADSVT 161

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|193575619|ref|XP_001942953.1| PREDICTED: facilitated trehalose transporter Tret1-like [Acyrthosiphon pisum]

 Score = 95.9 bits (237), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 42/80 (52%), Positives = 59/80 (73%)

Query: 2   GTILGWTSPAGDRLIAGEYPFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTML 61
           GT LGWT+PAG  +   +Y F ++  +L++IG+ M LGA+ G PV   LVD +GRKN ML
Sbjct: 43  GTALGWTAPAGPMMENNQYSFVISNENLAWIGACMPLGAMLGCPVTAGLVDKLGRKNMML 102

Query: 62  LLAVPTLVGWGLIIWSQSVS 81
           +L +PTLVGW +IIW++SV+
Sbjct: 103 MLCIPTLVGWAMIIWAESVA 122

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|289742799|gb|ADD20147.1| solute carrier family 2 [Glossina morsitans morsitans]

 Score = 94.7 bits (234), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 45/80 (56%), Positives = 60/80 (75%)

Query: 2   GTILGWTSPAGDRLIAGEYPFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTML 61
           GT+LGWTSPA +RLI GEY FPV+ +  S+IGS+M LGA F    +G L++ +GRK TML
Sbjct: 29  GTLLGWTSPAQNRLIGGEYGFPVSTAAFSWIGSAMTLGAAFICIPIGFLINMIGRKLTML 88

Query: 62  LLAVPTLVGWGLIIWSQSVS 81
           LL +P  +GW L+IW+Q+V 
Sbjct: 89  LLVLPFTLGWALLIWAQNVE 108

Source: Glossina morsitans morsitans

Species: Glossina morsitans

Genus: Glossina

Family: Glossinidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|251736857|gb|ACT10281.1| sugar transporter 1 [Sitobion avenae]

 Score = 92.8 bits (229), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 40/80 (50%), Positives = 58/80 (72%)

Query: 2   GTILGWTSPAGDRLIAGEYPFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTML 61
           GT LGWT+PAG  +   +Y F ++   L++IG+ M LGA+ G PV   LVD +GRKN M+
Sbjct: 43  GTALGWTAPAGPMMENNQYSFVISNESLAWIGACMPLGAMLGCPVTAGLVDKLGRKNMMI 102

Query: 62  LLAVPTLVGWGLIIWSQSVS 81
           +L +PTLVGW ++IW++SV+
Sbjct: 103 MLCIPTLVGWAMMIWAESVA 122

Source: Sitobion avenae

Species: Sitobion avenae

Genus: Sitobion

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|193596719|ref|XP_001950031.1| PREDICTED: facilitated trehalose transporter Tret1-like isoform 1 [Acyrthosiphon pisum] gi|328696681|ref|XP_003240096.1| PREDICTED: facilitated trehalose transporter Tret1-like isoform 2 [Acyrthosiphon pisum]

 Score = 91.3 bits (225), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 41/80 (51%), Positives = 60/80 (75%)

Query: 1   MGTILGWTSPAGDRLIAGEYPFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTM 60
           MGT LGWT+PAG  +  G+Y F +T  ++S+I S M LGA+ G PV+ +LV+ +GRK+ M
Sbjct: 88  MGTTLGWTAPAGPMMENGQYGFQITVENVSWIASVMPLGAMLGCPVMASLVNKLGRKHLM 147

Query: 61  LLLAVPTLVGWGLIIWSQSV 80
           ++L +PTL GW +IIW++SV
Sbjct: 148 IMLTIPTLFGWAMIIWAKSV 167

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195428086|ref|XP_002062105.1| GK17357 [Drosophila willistoni] gi|194158190|gb|EDW73091.1| GK17357 [Drosophila willistoni]

 Score = 75.1 bits (183), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 35/80 (43%), Positives = 55/80 (68%), Gaps = 1/80 (1%)

Query: 3   TILGWTSPAGDRLIAG-EYPFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTML 61
           T+LGWTSPA   ++   +Y FPV +   S++ S+M LGA      +G L++ +GRK TML
Sbjct: 113 TLLGWTSPAQTEIVDNPDYAFPVNDDQFSWVSSAMTLGAACVCIPIGFLINMIGRKWTML 172

Query: 62  LLAVPTLVGWGLIIWSQSVS 81
            L +P L+GWGL+IW+++++
Sbjct: 173 FLVLPFLLGWGLLIWAKNLA 192

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195166725|ref|XP_002024185.1| GL22895 [Drosophila persimilis] gi|194107540|gb|EDW29583.1| GL22895 [Drosophila persimilis]

 Score = 73.9 bits (180), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 38/80 (47%), Positives = 55/80 (68%), Gaps = 2/80 (2%)

Query: 3   TILGWTSPAGDRLIAGE--YPFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTM 60
           T+LGWTSPA  +++ G   Y FPV+ +  S++GSS+ LGA      +G L+  +GRK TM
Sbjct: 99  TVLGWTSPAQPQIVDGGEGYDFPVSGTQFSWVGSSINLGAACVCIPIGFLISLIGRKLTM 158

Query: 61  LLLAVPTLVGWGLIIWSQSV 80
           L+L +P LVGW ++IW+ SV
Sbjct: 159 LMLVLPFLVGWAMLIWAPSV 178

Source: Drosophila persimilis

Species: Drosophila persimilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|198466442|ref|XP_002135189.1| GA23919 [Drosophila pseudoobscura pseudoobscura] gi|198150603|gb|EDY73816.1| GA23919 [Drosophila pseudoobscura pseudoobscura]

 Score = 73.6 bits (179), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 38/80 (47%), Positives = 55/80 (68%), Gaps = 2/80 (2%)

Query: 3   TILGWTSPAGDRLIAGE--YPFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTM 60
           T+LGWTSPA  +++ G   Y FPV+ +  S++GSS+ LGA      +G L+  +GRK TM
Sbjct: 99  TVLGWTSPAQPQIVDGGEGYDFPVSGTQFSWVGSSINLGAACVCIPIGFLISLIGRKLTM 158

Query: 61  LLLAVPTLVGWGLIIWSQSV 80
           L+L +P LVGW ++IW+ SV
Sbjct: 159 LMLVLPFLVGWAMLIWAPSV 178

Source: Drosophila pseudoobscura pseudoobscura

Species: Drosophila pseudoobscura

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|24663515|ref|NP_729842.1| CG10960, isoform A [Drosophila melanogaster] gi|24663519|ref|NP_729843.1| CG10960, isoform C [Drosophila melanogaster] gi|23093592|gb|AAN11863.1| CG10960, isoform A [Drosophila melanogaster] gi|23093593|gb|AAN11864.1| CG10960, isoform C [Drosophila melanogaster]

 Score = 72.0 bits (175), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 37/81 (45%), Positives = 55/81 (67%), Gaps = 2/81 (2%)

Query: 3   TILGWTSPAGDRLI-AGE-YPFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTM 60
           T+LGWTSPA   ++  GE Y FPV +   S++GS+M LGA      +G L++ +GRK TM
Sbjct: 31  TVLGWTSPAETEIVDRGEGYDFPVDKDQFSWVGSAMTLGAACVCIPIGFLINMIGRKWTM 90

Query: 61  LLLAVPTLVGWGLIIWSQSVS 81
           L L +P ++GW ++IW+ +VS
Sbjct: 91  LFLVLPFILGWTMLIWAVNVS 111

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|24663511|ref|NP_648605.1| CG10960, isoform B [Drosophila melanogaster] gi|7294533|gb|AAF49874.1| CG10960, isoform B [Drosophila melanogaster] gi|21428998|gb|AAM50218.1| HL01062p [Drosophila melanogaster] gi|220943584|gb|ACL84335.1| CG10960-PA [synthetic construct] gi|220953532|gb|ACL89309.1| CG10960-PA [synthetic construct]

 Score = 72.0 bits (175), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 37/81 (45%), Positives = 55/81 (67%), Gaps = 2/81 (2%)

Query: 3   TILGWTSPAGDRLI-AGE-YPFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTM 60
           T+LGWTSPA   ++  GE Y FPV +   S++GS+M LGA      +G L++ +GRK TM
Sbjct: 99  TVLGWTSPAETEIVDRGEGYDFPVDKDQFSWVGSAMTLGAACVCIPIGFLINMIGRKWTM 158

Query: 61  LLLAVPTLVGWGLIIWSQSVS 81
           L L +P ++GW ++IW+ +VS
Sbjct: 159 LFLVLPFILGWTMLIWAVNVS 179

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	87
FB|FBgn0036316	539	CG10960 [Drosophila melanogast	0.919	0.148	0.463	1e-14
FB|FBgn0034247	465	CG6484 [Drosophila melanogaste	0.931	0.174	0.353	3.5e-10
FB|FBgn0028560	444	sut4 "sugar transporter 4" [Dr	0.931	0.182	0.341	1.4e-09
FB|FBgn0031522	466	CG3285 [Drosophila melanogaste	0.908	0.169	0.407	1.6e-09
FB|FBgn0037485	438	CG14606 [Drosophila melanogast	0.919	0.182	0.378	4.9e-09
UNIPROTKB|F1RS19	478	SLC2A8 "Uncharacterized protei	0.908	0.165	0.387	3e-07
FB|FBgn0031523	466	CG15408 [Drosophila melanogast	0.896	0.167	0.353	3.7e-07
UNIPROTKB|F1NDA6	482	SLC2A8 "Uncharacterized protei	0.908	0.163	0.362	1.7e-06
UNIPROTKB|A5LGM7	504	Tret1 "Facilitated trehalose t	0.678	0.117	0.406	1.9e-06
UNIPROTKB|A9ZSY3	505	Tret1 "Facilitated trehalose t	0.816	0.140	0.351	1.9e-06

FB|FBgn0036316 CG10960 [Drosophila melanogaster (taxid:7227)]

 Score = 196 (74.1 bits), Expect = 1.0e-14, P = 1.0e-14
 Identities = 38/82 (46%), Positives = 56/82 (68%)

Query:     2 GTILGWTSPAGDRLI-AGE-YPFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNT 59
             GT+LGWTSPA   ++  GE Y FPV +   S++GS+M LGA      +G L++ +GRK T
Sbjct:    98 GTVLGWTSPAETEIVDRGEGYDFPVDKDQFSWVGSAMTLGAACVCIPIGFLINMIGRKWT 157

Query:    60 MLLLAVPTLVGWGLIIWSQSVS 81
             ML L +P ++GW ++IW+ +VS
Sbjct:   158 MLFLVLPFILGWTMLIWAVNVS 179

GO:0005355 "glucose transmembrane transporter activity" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0046427 "positive regulation of JAK-STAT cascade" evidence=IMP

FB|FBgn0034247 CG6484 [Drosophila melanogaster (taxid:7227)]

 Score = 153 (58.9 bits), Expect = 3.5e-10, P = 3.5e-10
 Identities = 29/82 (35%), Positives = 50/82 (60%)

Query:     1 MGTILGWTSPAGDRLIAG-EYPFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNT 59
             MG  +GW+SP  + +    EY FP++ S   ++ S + LGA      +G  +D +GR+ T
Sbjct:    23 MGASIGWSSPVENMITVNTEYGFPISSSQFGWVSSLLTLGATVICIPIGFAIDWIGRRPT 82

Query:    60 MLLLAVPTLVGWGLIIWSQSVS 81
             ML L  P +VGW L++++++V+
Sbjct:    83 MLALIPPYMVGWVLMLFAKNVT 104

GO:0005355 "glucose transmembrane transporter activity" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

FB|FBgn0028560 sut4 "sugar transporter 4" [Drosophila melanogaster (taxid:7227)]

 Score = 147 (56.8 bits), Expect = 1.4e-09, P = 1.4e-09
 Identities = 28/82 (34%), Positives = 47/82 (57%)

Query:     1 MGTILGWTSPAGDRLI-AGEYPFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNT 59
             +G ++GW+ P  + +  +  Y F   +++   +GS M LGA F    VG L+  +GRK T
Sbjct:    20 LGAVIGWSGPVENEVKNSNAYNFTPRQTEWGLVGSLMTLGAAFSCIPVGVLIGKIGRKTT 79

Query:    60 MLLLAVPTLVGWGLIIWSQSVS 81
             ML+L  P  +GW LI+ +  ++
Sbjct:    80 MLILLPPFFIGWLLILLASHIA 101

GO:0005355 "glucose transmembrane transporter activity" evidence=ISS

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

FB|FBgn0031522 CG3285 [Drosophila melanogaster (taxid:7227)]

 Score = 147 (56.8 bits), Expect = 1.6e-09, P = 1.6e-09
 Identities = 33/81 (40%), Positives = 47/81 (58%)

Query:     2 GTILGWTSPAGDRLIAGEYP--FPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNT 59
             G  +GW SP    L   E P  FPV  S +S+IGS + +G+V G+ + G L+D +GRK  
Sbjct:    40 GLGVGWMSPVMRDLQTDESPLDFPVLVSQVSWIGSLVGIGSVMGNLIAGLLMDRIGRKMV 99

Query:    60 MLLLAVPTLVGWGLIIWSQSV 80
             +  +A+P    W LI + QSV
Sbjct:   100 LFFIAIPYTTFWCLIYFVQSV 120

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

FB|FBgn0037485 CG14606 [Drosophila melanogaster (taxid:7227)]

 Score = 142 (55.0 bits), Expect = 4.9e-09, P = 4.9e-09
 Identities = 31/82 (37%), Positives = 50/82 (60%)

Query:     2 GTILGWTSPAGDRLIAGEYPF--PVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNT 59
             G  +GW SP+   L + E P   P+T +  S++GS + LG++ G+ + G L+D +GRK  
Sbjct:     6 GIAVGWLSPSLRLLASDESPLGDPLTITQASWVGSLIGLGSLTGNIIFGLLLDRLGRKVC 65

Query:    60 MLLLAVPTLVGWGLIIWSQSVS 81
             M  LA+P ++ W LI  +Q V+
Sbjct:    66 MYFLAIPNMIYWILIYSAQDVT 87

GO:0015149 "hexose transmembrane transporter activity" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0006911 "phagocytosis, engulfment" evidence=IMP

UNIPROTKB|F1RS19 SLC2A8 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 126 (49.4 bits), Expect = 3.0e-07, P = 3.0e-07
 Identities = 31/80 (38%), Positives = 47/80 (58%)

Query:     2 GTILGWTSPAGDRLIAGEYPFPVTESDL-SFIGSSMALGAVFGSPVVGNLVDTVGRKNTM 60
             G +LG++SPA   L     P P  ++D  S+ G+ + LGA  G  + G LVD  GRK ++
Sbjct:    41 GFVLGYSSPAIPSLRRAAPPAPRLDNDATSWFGAIVTLGAAVGGVLGGWLVDRAGRKLSL 100

Query:    61 LLLAVPTLVGWGLIIWSQSV 80
             LL  VP + G+ +I  +Q+V
Sbjct:   101 LLCTVPFVAGFAIITAAQNV 120

GO:0016021 "integral to membrane" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

FB|FBgn0031523 CG15408 [Drosophila melanogaster (taxid:7227)]

 Score = 125 (49.1 bits), Expect = 3.7e-07, P = 3.7e-07
 Identities = 29/82 (35%), Positives = 51/82 (62%)

Query:     2 GTILGWTSPAGDRLIAGEYP--FPV-TESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKN 58
             G  +GW SP   R +  + P  F V +E ++S++GS + +G+V G+ ++G L+  +G K 
Sbjct:    35 GIGIGWLSPTL-RKLQSDSPAGFEVKSEFEISWVGSMLGMGSVTGNILIGCLLGRLGSKR 93

Query:    59 TMLLLAVPTLVGWGLIIWSQSV 80
              +LL+A+P    W L+ ++QSV
Sbjct:    94 CLLLIAIPHSCFWILVYFAQSV 115

GO:0005353 "fructose transmembrane transporter activity" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

UNIPROTKB|F1NDA6 SLC2A8 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 119 (46.9 bits), Expect = 1.7e-06, P = 1.7e-06
 Identities = 29/80 (36%), Positives = 49/80 (61%)

Query:     2 GTILGWTSPAGDRLIAGEYP-FPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTM 60
             G +LG++SPA   L   + P   +  +  S+ GS + LGA  G  + G LVD +GRK ++
Sbjct:    41 GFVLGYSSPAIPELRKIDNPKLRLDSNQASWFGSIVTLGAAAGGILGGYLVDKIGRKLSL 100

Query:    61 LLLAVPTLVGWGLIIWSQSV 80
             +L ++P + G+ +II +Q+V
Sbjct:   101 MLCSIPFVSGYIVIISAQNV 120

GO:0001666 "response to hypoxia" evidence=IEA

GO:0005355 "glucose transmembrane transporter activity" evidence=IEA

GO:0005536 "glucose binding" evidence=IEA

GO:0005887 "integral to plasma membrane" evidence=IEA

GO:0008286 "insulin receptor signaling pathway" evidence=IEA

GO:0043231 "intracellular membrane-bounded organelle" evidence=IEA

UNIPROTKB|A5LGM7 Tret1 "Facilitated trehalose transporter Tret1" [Polypedilum vanderplanki (taxid:319348)]

 Score = 119 (46.9 bits), Expect = 1.9e-06, P = 1.9e-06
 Identities = 24/59 (40%), Positives = 36/59 (61%)

Query:    22 FPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSV 80
             F VTE + S++G  M L  + G    G  ++ +GRKNT+L  AVP +V W LI ++ S+
Sbjct:    79 FKVTEQEASWVGGIMPLAGLAGGIAGGPFIEYLGRKNTILATAVPFIVAWLLIAFANSI 137

GO:0015574 "trehalose transmembrane transporter activity" evidence=IDA

GO:0015771 "trehalose transport" evidence=IDA

GO:0044459 "plasma membrane part" evidence=IDA

GO:0015767 "lactose transport" evidence=IDA

GO:0015768 "maltose transport" evidence=IDA

GO:0015770 "sucrose transport" evidence=IDA

UNIPROTKB|A9ZSY3 Tret1 "Facilitated trehalose transporter Tret1" [Bombyx mori (taxid:7091)]

 Score = 119 (46.9 bits), Expect = 1.9e-06, P = 1.9e-06
 Identities = 26/74 (35%), Positives = 44/74 (59%)

Query:     1 MGTILGWTSPAGDRLIAGEYPFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTM 60
             +G   G+TSPA   ++       +T+ +++++G  M L A+ G  V G L++ +GRK T+
Sbjct:    65 VGFSSGYTSPA---VLTMNITLDITKEEITWVGGLMPLAALVGGIVGGPLIEYLGRKKTI 121

Query:    61 LLLAVPTLVGWGLI 74
             +  AVP  +GW LI
Sbjct:   122 MGTAVPFTIGWMLI 135

GO:0015574 "trehalose transmembrane transporter activity" evidence=IDA

GO:0015771 "trehalose transport" evidence=IDA

GO:0044459 "plasma membrane part" evidence=IDA

GO:0015767 "lactose transport" evidence=IDA

GO:0015768 "maltose transport" evidence=IDA

GO:0015770 "sucrose transport" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	87
pfam00083	449	pfam00083, Sugar_tr, Sugar (and other) transporter	4e-04

>gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter

 Score = 36.9 bits (86), Expect = 4e-04
 Identities = 15/51 (29%), Positives = 25/51 (49%)

Query: 27 SDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWS 77
               I S  ++G + GS   G L D  GRK ++L+  V  ++G  L  ++
Sbjct: 46 VLSGLIVSIFSVGCLIGSLFAGKLGDRFGRKKSLLIGNVLFVIGALLQGFA 96

Length = 449

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	87
PRK09705	393	cynX putative cyanate transporter; Provisional	99.18
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.1
PRK03633	381	putative MFS family transporter protein; Provision	99.07
PRK10091	382	MFS transport protein AraJ; Provisional	99.07
PRK03545	390	putative arabinose transporter; Provisional	99.04
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.04
TIGR00891	405	2A0112 putative sialic acid transporter.	99.03
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	99.02
PRK14995	495	methyl viologen resistance protein SmvA; Provision	99.01
PRK15403	413	multidrug efflux system protein MdtM; Provisional	98.99
TIGR00898	505	2A0119 cation transport protein.	98.99
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	98.97
PRK10077	479	xylE D-xylose transporter XylE; Provisional	98.96
PRK12307	426	putative sialic acid transporter; Provisional	98.95
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	98.95
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	98.95
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	98.94
KOG0254|consensus	513		98.93
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	98.92
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	98.92
PRK10213	394	nepI ribonucleoside transporter; Reviewed	98.92
PRK10133	438	L-fucose transporter; Provisional	98.92
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	98.91
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	98.91
PRK11652	394	emrD multidrug resistance protein D; Provisional	98.9
PRK03699	394	putative transporter; Provisional	98.9
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	98.89
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	98.88
TIGR00896	355	CynX cyanate transporter. This family of proteins	98.88
PRK11043	401	putative transporter; Provisional	98.88
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	98.86
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	98.84
TIGR00893	399	2A0114 d-galactonate transporter.	98.84
PLN00028	476	nitrate transmembrane transporter; Provisional	98.84
PRK03893	496	putative sialic acid transporter; Provisional	98.83
PRK11663	434	regulatory protein UhpC; Provisional	98.83
KOG0255|consensus	521		98.83
PRK10473	392	multidrug efflux system protein MdtL; Provisional	98.82
TIGR00900	365	2A0121 H+ Antiporter protein.	98.81
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	98.79
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	98.78
PRK05122	399	major facilitator superfamily transporter; Provisi	98.78
TIGR00895	398	2A0115 benzoate transport.	98.77
PRK10504	471	putative transporter; Provisional	98.77
TIGR00892	455	2A0113 monocarboxylate transporter 1.	98.77
PRK10642	490	proline/glycine betaine transporter; Provisional	98.76
PRK12382	392	putative transporter; Provisional	98.73
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	98.73
PF06779	85	DUF1228: Protein of unknown function (DUF1228); In	98.7
KOG1330|consensus	493		98.69
PRK09874	408	drug efflux system protein MdtG; Provisional	98.68
PRK10054	395	putative transporter; Provisional	98.68
PRK10406	432	alpha-ketoglutarate transporter; Provisional	98.64
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	98.6
PRK10207	489	dipeptide/tripeptide permease B; Provisional	98.59
TIGR00897	402	2A0118 polyol permease family. This family of prot	98.59
PRK11195	393	lysophospholipid transporter LplT; Provisional	98.58
PRK15075	434	citrate-proton symporter; Provisional	98.55
PF12832	77	MFS_1_like: MFS_1 like family	98.55
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	98.54
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	98.53
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	98.52
TIGR00805	633	oat sodium-independent organic anion transporter.	98.48
PRK11646	400	multidrug resistance protein MdtH; Provisional	98.48
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	98.45
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	98.43
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	98.41
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	98.4
PRK09528	420	lacY galactoside permease; Reviewed	98.39
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	98.39
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	98.38
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	98.36
KOG2504|consensus	509		98.36
KOG2615|consensus	451		98.33
PTZ00207	591	hypothetical protein; Provisional	98.31
PRK09952	438	shikimate transporter; Provisional	98.31
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	98.3
PRK15462	493	dipeptide/tripeptide permease D; Provisional	98.27
KOG0569|consensus	485		98.26
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	98.25
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	98.24
KOG0252|consensus	538		98.23
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	98.23
KOG2532|consensus	466		98.18
TIGR00901	356	2A0125 AmpG-related permease.	98.17
PRK09584	500	tppB putative tripeptide transporter permease; Rev	98.14
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	98.13
PRK10489	417	enterobactin exporter EntS; Provisional	98.12
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	98.07
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	98.06
PRK11902	402	ampG muropeptide transporter; Reviewed	98.03
PRK15011	393	sugar efflux transporter B; Provisional	98.0
PRK03699	394	putative transporter; Provisional	97.98
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	97.97
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	97.97
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	97.96
KOG3764|consensus	464		97.92
PRK15011	393	sugar efflux transporter B; Provisional	97.91
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	97.91
PRK09528	420	lacY galactoside permease; Reviewed	97.89
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	97.87
KOG0253|consensus	528		97.86
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	97.85
PRK10133	438	L-fucose transporter; Provisional	97.83
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	97.83
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	97.81
PRK10473	392	multidrug efflux system protein MdtL; Provisional	97.79
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	97.77
PRK10642	490	proline/glycine betaine transporter; Provisional	97.77
TIGR00896	355	CynX cyanate transporter. This family of proteins	97.76
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	97.74
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	97.73
PRK03893	496	putative sialic acid transporter; Provisional	97.73
TIGR00891	405	2A0112 putative sialic acid transporter.	97.72
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	97.71
PRK03633	381	putative MFS family transporter protein; Provision	97.7
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	97.7
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	97.69
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	97.69
PRK10091	382	MFS transport protein AraJ; Provisional	97.67
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	97.67
PRK10077	479	xylE D-xylose transporter XylE; Provisional	97.67
PRK09705	393	cynX putative cyanate transporter; Provisional	97.66
PRK15075	434	citrate-proton symporter; Provisional	97.65
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	97.64
KOG0569|consensus	485		97.64
PRK12307	426	putative sialic acid transporter; Provisional	97.61
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	97.6
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	97.6
TIGR00901	356	2A0125 AmpG-related permease.	97.59
KOG3762|consensus	618		97.58
PRK03545	390	putative arabinose transporter; Provisional	97.55
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	97.55
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	97.54
PRK09952	438	shikimate transporter; Provisional	97.51
PRK10406	432	alpha-ketoglutarate transporter; Provisional	97.5
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	97.46
TIGR00895	398	2A0115 benzoate transport.	97.45
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	97.44
TIGR00897	402	2A0118 polyol permease family. This family of prot	97.44
TIGR00900	365	2A0121 H+ Antiporter protein.	97.43
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	97.42
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	97.42
PRK11010	491	ampG muropeptide transporter; Validated	97.38
PRK11010	491	ampG muropeptide transporter; Validated	97.36
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	97.36
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	97.35
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	97.35
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	97.34
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	97.33
PRK14995	495	methyl viologen resistance protein SmvA; Provision	97.33
PF13347	428	MFS_2: MFS/sugar transport protein	97.3
PLN00028	476	nitrate transmembrane transporter; Provisional	97.26
PRK10504	471	putative transporter; Provisional	97.23
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	97.23
PRK10489	417	enterobactin exporter EntS; Provisional	97.2
PRK05122	399	major facilitator superfamily transporter; Provisi	97.11
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	97.1
PRK09874	408	drug efflux system protein MdtG; Provisional	97.09
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	97.09
PRK09669	444	putative symporter YagG; Provisional	97.08
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	97.08
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	97.06
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	97.05
COG2270	438	Permeases of the major facilitator superfamily [Ge	96.93
PRK11902	402	ampG muropeptide transporter; Reviewed	96.93
PRK12382	392	putative transporter; Provisional	96.93
KOG2533|consensus	495		96.9
TIGR00788	468	fbt folate/biopterin transporter. The only functio	96.87
KOG0254|consensus	513		96.85
PRK10429	473	melibiose:sodium symporter; Provisional	96.84
PRK09848	448	glucuronide transporter; Provisional	96.83
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	96.8
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	96.8
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	96.78
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	96.75
PRK10429	473	melibiose:sodium symporter; Provisional	96.74
TIGR00893	399	2A0114 d-galactonate transporter.	96.73
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	96.71
PRK10213	394	nepI ribonucleoside transporter; Reviewed	96.71
COG0477	338	ProP Permeases of the major facilitator superfamil	96.67
PRK11043	401	putative transporter; Provisional	96.65
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	96.61
COG2211	467	MelB Na+/melibiose symporter and related transport	96.61
PRK11195	393	lysophospholipid transporter LplT; Provisional	96.6
KOG0253|consensus	528		96.59
PRK09848	448	glucuronide transporter; Provisional	96.55
TIGR00898	505	2A0119 cation transport protein.	96.47
KOG2504|consensus	509		96.46
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	96.4
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	96.36
PRK11462	460	putative transporter; Provisional	96.2
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	96.18
PRK09669	444	putative symporter YagG; Provisional	96.14
PRK11663	434	regulatory protein UhpC; Provisional	96.05
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	95.98
KOG4686|consensus	459		95.73
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	95.69
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	95.63
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	95.62
PF13347	428	MFS_2: MFS/sugar transport protein	95.57
PRK10054	395	putative transporter; Provisional	95.53
TIGR00892	455	2A0113 monocarboxylate transporter 1.	95.4
TIGR00788	468	fbt folate/biopterin transporter. The only functio	94.92
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	94.61
TIGR00805	633	oat sodium-independent organic anion transporter.	94.58
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	94.47
KOG2563|consensus	480		94.33
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	94.33
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	94.3
KOG3626|consensus	735		94.28
KOG2816|consensus	463		94.15
PRK11646	400	multidrug resistance protein MdtH; Provisional	94.02
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	93.7
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	93.61
KOG2325|consensus	488		93.34
KOG4332|consensus	454		92.88
KOG2533|consensus	495		92.5
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	92.34
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	92.19
PRK11652	394	emrD multidrug resistance protein D; Provisional	92.0
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	90.88
PRK11462	460	putative transporter; Provisional	90.45
KOG0252|consensus	538		89.94
KOG0637|consensus	498		89.42
KOG2532|consensus	466		89.33
KOG4686|consensus	459		89.28
KOG3764|consensus	464		88.88
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	88.77
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	87.65
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	87.34
COG2270	438	Permeases of the major facilitator superfamily [Ge	87.28
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	87.1
PRK15403	413	multidrug efflux system protein MdtM; Provisional	86.99
KOG2816|consensus	463		86.65
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	85.59
KOG3574|consensus	510		83.92
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	83.22
PRK09584	500	tppB putative tripeptide transporter permease; Rev	82.35
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	81.99
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	81.57
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	81.47
COG2211	467	MelB Na+/melibiose symporter and related transport	81.4
PRK15462	493	dipeptide/tripeptide permease D; Provisional	80.12

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.18  E-value=3.1e-11  Score=75.85  Aligned_cols=74  Identities=9%  Similarity=-0.099  Sum_probs=67.6

Q ss_pred             eccccccccccCCCCCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhcccccc
Q psy15540          7 WTSPAGDRLIAGEYPFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSVSRH   83 (87)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~a~~~~~l   83 (87)
                      ...+..|.+++   +++.+.++.++..+.+.++..+++++.|++.||+|||+++..+..+..++.+.+++++++..+
T Consensus        27 ~~~~~lp~i~~---~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~~~~~~~a~~~~~l  100 (393)
T PRK09705         27 SVGPLLPQLRQ---ASGMSFSVAALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAVGALMRELYPQSALL  100 (393)
T ss_pred             ccchhHHHHHH---HhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHCcchHHH
Confidence            34566777777   899999999999999999999999999999999999999999999999999999999987654

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.10  E-value=6.3e-11  Score=72.84  Aligned_cols=72  Identities=18%  Similarity=0.214  Sum_probs=64.5

Q ss_pred             cccccccccCCCCCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhcccccc
Q psy15540          9 SPAGDRLIAGEYPFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSVSRH   83 (87)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~a~~~~~l   83 (87)
                      .+..|.+.+   +++.++++.++..+.+.++..++.++.|+++||+|||+++..+..+..++.+.++++++++.+
T Consensus        23 ~~~~~~~~~---~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~   94 (377)
T TIGR00890        23 TLLAPPLGR---YFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYAIADSLAAL   94 (377)
T ss_pred             hhHHHHHHH---HhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHHHHHHHHHHHHHHH
Confidence            345666766   889999999999999999999999999999999999999999999999999999988887654

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.07  E-value=1.3e-10  Score=72.69  Aligned_cols=77  Identities=12%  Similarity=0.110  Sum_probs=67.6

Q ss_pred             eeeeccccccccccCCCCCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhcccccc
Q psy15540          4 ILGWTSPAGDRLIAGEYPFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSVSRH   83 (87)
Q Consensus         4 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~a~~~~~l   83 (87)
                      ..+..++..|.+++   +++.++.+.++..+.+.++..+++++.|+++||+|||+.+..+..+..++....+++++++.+
T Consensus        21 ~~~~~~~~lp~~~~---~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~~~~~~~~~~~~~~~~~~~l   97 (381)
T PRK03633         21 AIAVLNTLVPLWLA---QEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLASLIFAAGCAGLGLMVGFWSW   97 (381)
T ss_pred             hhhhHHHHHHHHHH---HcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHH
Confidence            34556677787877   789999999999999999999999999999999999999999999999998888888887553

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.07  E-value=9.2e-11  Score=73.37  Aligned_cols=74  Identities=19%  Similarity=0.223  Sum_probs=65.9

Q ss_pred             ccccccccccCCCCCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhccccccc
Q psy15540          8 TSPAGDRLIAGEYPFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSVSRHG   84 (87)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~a~~~~~l~   84 (87)
                      ..+.+|.+.+   +++.+.++.++..+...++..+++++.|+++||+|||+++..+..+..++.++++++++++.+.
T Consensus        22 ~~~~l~~~~~---~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~l~~~~~~~~~l~   95 (382)
T PRK10091         22 IMGVLTELAH---DVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAMFTLSSSYLMLA   95 (382)
T ss_pred             HHhChHHHHH---HcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHHhCcHHHHH
Confidence            3456677776   8899999999999999999999999999999999999999999999999999999998876543

>PRK03545 putative arabinose transporter; Provisional

Probab=99.04  E-value=4e-10  Score=70.60  Aligned_cols=71  Identities=13%  Similarity=0.050  Sum_probs=63.4

Q ss_pred             ccccccccCCCCCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhcccccc
Q psy15540         10 PAGDRLIAGEYPFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSVSRH   83 (87)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~a~~~~~l   83 (87)
                      +..|.+.+   +++.++++.++..+.+.++..++.++.|++.||+|||+++..+..+..++.+.+.++++++.+
T Consensus        30 ~~~~~l~~---~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l  100 (390)
T PRK03545         30 GLLSDIAQ---SFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFIASHVLSALAWNFTVL  100 (390)
T ss_pred             cchHHHHh---HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHhccHHHH
Confidence            44566666   899999999999999999999999999999999999999999999999999999998887654

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.04  E-value=4.2e-10  Score=71.28  Aligned_cols=70  Identities=7%  Similarity=0.026  Sum_probs=62.6

Q ss_pred             cccccccCCCCCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhcccccc
Q psy15540         11 AGDRLIAGEYPFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSVSRH   83 (87)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~a~~~~~l   83 (87)
                      ..|.+++   +++.+.++.++..+.+.++..+++++.|++.||+|||+++..+.++..++...++++++++.+
T Consensus        30 ~~~~l~~---~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~l   99 (412)
T TIGR02332        30 AGLTMGK---DLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLWGIASTATMFATGPESL   99 (412)
T ss_pred             HHHhhHh---hcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence            3455555   899999999999999999999999999999999999999999999999999999998887654

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.03  E-value=1.7e-10  Score=71.78  Aligned_cols=72  Identities=18%  Similarity=0.118  Sum_probs=63.1

Q ss_pred             cccccccccCCCCCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhcccccc
Q psy15540          9 SPAGDRLIAGEYPFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSVSRH   83 (87)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~a~~~~~l   83 (87)
                      .+..|.+++   +++.++.+.+++.+...++..++.++.|+++||+|||+++..+..+..++.+.+.++++++.+
T Consensus        32 ~~~~~~l~~---~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l  103 (405)
T TIGR00891        32 ALVLAEVAG---EFGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIVLFSAGTLACGFAPGYITM  103 (405)
T ss_pred             HHHHHHHHH---HhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHHHH
Confidence            445566666   889999999999999999999999999999999999999999999999988888888876543

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=99.02  E-value=4.4e-10  Score=71.05  Aligned_cols=73  Identities=21%  Similarity=0.181  Sum_probs=67.0

Q ss_pred             cccccccccCCCCCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhccccccc
Q psy15540          9 SPAGDRLIAGEYPFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSVSRHG   84 (87)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~a~~~~~l~   84 (87)
                      .+.+|.+.+   +++.++.+.+++.+.+.++..++.|+...+.||+.||++++....++.++.+++++++|++.+.
T Consensus        33 ~gLLp~iA~---dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lFi~~n~l~alAp~f~~Ll  105 (394)
T COG2814          33 VGLLPPIAA---DLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLSALAPSFAVLL  105 (394)
T ss_pred             HhchHHHHH---HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHhccHHHHH
Confidence            345666666   8999999999999999999999999999999999999999999999999999999999997653

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=99.01  E-value=4.3e-10  Score=72.66  Aligned_cols=72  Identities=18%  Similarity=0.065  Sum_probs=64.8

Q ss_pred             cccccccccCCCCCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhcccccc
Q psy15540          9 SPAGDRLIAGEYPFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSVSRH   83 (87)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~a~~~~~l   83 (87)
                      +...|.+.+   +++.++++.+|..+.+.++.....++.|+++||+|||+++..+..+..++.+.++.+++++.+
T Consensus        26 ~~a~p~i~~---~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~~~~~~~~~a~~~~~l   97 (495)
T PRK14995         26 HVAAPTLSM---TLGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLFGLASLAAAFSPTASWL   97 (495)
T ss_pred             HHHHHHHHH---HhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHcCCHHHH
Confidence            445677766   899999999999999999999999999999999999999999999999999999999887654

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=98.99  E-value=6e-10  Score=70.62  Aligned_cols=73  Identities=16%  Similarity=0.175  Sum_probs=63.8

Q ss_pred             ccccccccccCCCCCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhcccccc
Q psy15540          8 TSPAGDRLIAGEYPFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSVSRH   83 (87)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~a~~~~~l   83 (87)
                      ..|.+|.+.+   +++.++.+.++..+++.++..++.++.|+++||+|||+++..+..+..++.+.+..+++++.+
T Consensus        35 ~~p~l~~i~~---~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l  107 (413)
T PRK15403         35 IQPGIINVVR---DFNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLFTTSMTQF  107 (413)
T ss_pred             hccCHHHHHH---HhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHHHcCCHHHH
Confidence            4455566655   788999999999999999999999999999999999999999999999999999988887554

>TIGR00898 2A0119 cation transport protein

Probab=98.99  E-value=9.5e-10  Score=70.84  Aligned_cols=70  Identities=24%  Similarity=0.354  Sum_probs=61.7

Q ss_pred             cccccccCCCCCccc---cchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhcccccc
Q psy15540         11 AGDRLIAGEYPFPVT---ESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSVSRH   83 (87)
Q Consensus        11 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~a~~~~~l   83 (87)
                      ..|.+.+   +++++   +.+.++..+++.++..++.++.|+++||+|||+++..+.++..++.+..+++++++.+
T Consensus       111 ~~~~i~~---e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~  183 (505)
T TIGR00898       111 FSSTIVT---EWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVF  183 (505)
T ss_pred             ccccEEE---EecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHcccHHHH
Confidence            3455555   78888   7889999999999999999999999999999999999999999999999988887654

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=98.97  E-value=2.5e-10  Score=77.08  Aligned_cols=73  Identities=18%  Similarity=0.139  Sum_probs=63.6

Q ss_pred             ccccccccccCCCCCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhcccccc
Q psy15540          8 TSPAGDRLIAGEYPFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSVSRH   83 (87)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~a~~~~~l   83 (87)
                      .+.++|.+..   +++++..+.+++.++..++..++++++|+++||+|||++++++.++..++.++++++++++.+
T Consensus       186 is~ilp~i~~---~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~GRR~~lii~lil~~i~~ll~afa~s~~~l  258 (742)
T TIGR01299       186 VGFVLPSAEK---DLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLSVNGFFAFFSSFVQGYGFF  258 (742)
T ss_pred             HHHHHHHHHH---HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence            3445566666   788999999999999999999999999999999999999999999999999988888876554

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=98.96  E-value=1.2e-09  Score=69.77  Aligned_cols=75  Identities=20%  Similarity=0.235  Sum_probs=58.5

Q ss_pred             ceeeeeccccccccccC-----CCCCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHH
Q psy15540          2 GTILGWTSPAGDRLIAG-----EYPFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIW   76 (87)
Q Consensus         2 g~~~g~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~   76 (87)
                      |+..++.++..|.+++.     ..+++.++++.++..+.+.++..+++++.|+++||+|||+++..+..+..++.+.+++
T Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~Grr~~~~~~~~l~~i~~~~~~~  104 (479)
T PRK10077         25 GYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISALGSAW  104 (479)
T ss_pred             CcccceehHhHHHHHHHhcccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHh
Confidence            34444455555544442     1234778889999999999999999999999999999999999999998887776665

>PRK12307 putative sialic acid transporter; Provisional

Probab=98.95  E-value=3.8e-10  Score=71.17  Aligned_cols=72  Identities=26%  Similarity=0.296  Sum_probs=62.7

Q ss_pred             cccccccccCCCCCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhcccccc
Q psy15540          9 SPAGDRLIAGEYPFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSVSRH   83 (87)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~a~~~~~l   83 (87)
                      .+..|.+++   +++.++.+.++..+...++..++.++.|+++||+|||+++..+.....++...++++++++.+
T Consensus        38 ~~~~~~i~~---~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l  109 (426)
T PRK12307         38 FYIMYLIKA---DLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYSVGTGLSGLASGVIML  109 (426)
T ss_pred             HHHHHHHHH---HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence            344555555   789999999999999999999999999999999999999999999999999888888776543

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=98.95  E-value=5.6e-10  Score=69.21  Aligned_cols=74  Identities=20%  Similarity=0.143  Sum_probs=64.4

Q ss_pred             eccccccccccCCCCCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhcccccc
Q psy15540          7 WTSPAGDRLIAGEYPFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSVSRH   83 (87)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~a~~~~~l   83 (87)
                      ...+..|.+.+   +++.++++.++..+...++..++.++.|+++||+|||+.+..+..+..++.+....+++++.+
T Consensus        23 ~~~~~~p~~~~---~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~   96 (385)
T TIGR00710        23 MYLPAFPEIAA---DLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALSNNIETL   96 (385)
T ss_pred             HhcccHHHHHH---HhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHccHHHH
Confidence            34556677766   889999999999999999999999999999999999999999999999888888888776543

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=98.95  E-value=4.9e-10  Score=71.09  Aligned_cols=72  Identities=17%  Similarity=0.090  Sum_probs=64.5

Q ss_pred             ceeeeeccccccccccCCCCCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHH
Q psy15540          2 GTILGWTSPAGDRLIAGEYPFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIW   76 (87)
Q Consensus         2 g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~   76 (87)
                      |+.++...+..|.+++   +++.++.+.+++.+...++..++.++.+++.||+|||+++..+..+..++..++..
T Consensus        16 G~~~~~~~~l~~~~~~---~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l~~~   87 (410)
T TIGR00885        16 GFANDITNPMVPQFQQ---AFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFLFWP   87 (410)
T ss_pred             HHHHHhHHHHHHHHHH---HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHH
Confidence            4556677788888888   89999999999999999999999999999999999999999999999888877644

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=98.94  E-value=1.2e-09  Score=67.42  Aligned_cols=72  Identities=18%  Similarity=0.113  Sum_probs=62.8

Q ss_pred             cccccc-cccCCCCCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhc-ccccc
Q psy15540          9 SPAGDR-LIAGEYPFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQ-SVSRH   83 (87)
Q Consensus         9 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~a~-~~~~l   83 (87)
                      .+..|. +++   +++.++.+.+++.+...++..++.++.|+++||+|||+.+..+.++..++.+..++++ +++.+
T Consensus        21 ~~~~~~~~~~---~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~~~~~~~~~~   94 (366)
T TIGR00886        21 SPLAVQMIKD---DLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGLAVQSYSVL   94 (366)
T ss_pred             HHhhhHHHHH---HhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence            445563 555   8899999999999999999999999999999999999999999999999998888887 66543

>KOG0254|consensus

Probab=98.93  E-value=2.5e-09  Score=69.50  Aligned_cols=79  Identities=33%  Similarity=0.346  Sum_probs=63.2

Q ss_pred             eeeccccccccccCCC--CCcccc--chhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhccc
Q psy15540          5 LGWTSPAGDRLIAGEY--PFPVTE--SDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSV   80 (87)
Q Consensus         5 ~g~~~~~~~~~~~~~~--~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~a~~~   80 (87)
                      .|+.+++...++....  +...+.  .+.+++.+...+++.+++++.|.++|++|||++++.+.+.+.++.+++++++|.
T Consensus        63 ~g~~s~~~~~~~~~~~~~~~~~~~~~~~~s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a~~~  142 (513)
T KOG0254|consen   63 IGGISGALDFLQRFASLYDLSTGEYSVRQGLLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALAPSW  142 (513)
T ss_pred             cccchhhHHHHHhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhH
Confidence            4566666666655311  112222  355999999999999999999999999999999999999999999999999987


Q ss_pred             ccc
Q psy15540         81 SRH   83 (87)
Q Consensus        81 ~~l   83 (87)
                      .++
T Consensus       143 ~~l  145 (513)
T KOG0254|consen  143 YQL  145 (513)
T ss_pred             HHH
Confidence            654

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=98.92  E-value=5.6e-10  Score=70.03  Aligned_cols=72  Identities=18%  Similarity=0.166  Sum_probs=61.7

Q ss_pred             cccccccccCCCCCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhcccccc
Q psy15540          9 SPAGDRLIAGEYPFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSVSRH   83 (87)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~a~~~~~l   83 (87)
                      ....|.+.+   +++.++++.+++.+...++..+++++.|+++||+|||+++..+..+..++.+...++++++.+
T Consensus        35 ~~~~~~~~~---~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~  106 (406)
T PRK11551         35 GVAAPRMAQ---EFGLDVAQMGWAFSAGILGLLPGALLGGRLADRIGRKRILIVSVALFGLFSLATAQAWDFPSL  106 (406)
T ss_pred             HHHHHHHHH---HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhccHHHH
Confidence            344556666   789999999999999999999999999999999999999999998888888888887776543

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=98.92  E-value=6.7e-10  Score=70.92  Aligned_cols=74  Identities=15%  Similarity=0.154  Sum_probs=64.4

Q ss_pred             eccccccccccCCCCCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhcccccc
Q psy15540          7 WTSPAGDRLIAGEYPFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSVSRH   83 (87)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~a~~~~~l   83 (87)
                      ..++..|.+.+   +++.++++.++..+.+.++..++.++.|+++||+|||+.+..+..+..++...+..++++..+
T Consensus        20 ~~~~~~p~~~~---~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l   93 (485)
T TIGR00711        20 IVNVAIPTIAG---DLGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSLLCGVAPNLELM   93 (485)
T ss_pred             HHHHHHHHHHH---hcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHHHHhCcCCHHHH
Confidence            34455666666   889999999999999999999999999999999999999999999999999988888776543

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=98.92  E-value=2.2e-09  Score=67.72  Aligned_cols=70  Identities=17%  Similarity=0.173  Sum_probs=61.4

Q ss_pred             cccccccCCCCCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhcccccc
Q psy15540         11 AGDRLIAGEYPFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSVSRH   83 (87)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~a~~~~~l   83 (87)
                      ..|.+.+   +++.++++.++..+...++..++.++.|++.||+|||+.+..+.++..++.+...++++++.+
T Consensus        42 ~l~~~~~---~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l  111 (394)
T PRK10213         42 LLTPMAQ---DLGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLVSFANSFSLL  111 (394)
T ss_pred             hHHHHHH---HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHChHHHH
Confidence            3455555   789999999999999999999999999999999999999999999999998888888776654

>PRK10133 L-fucose transporter; Provisional

Probab=98.92  E-value=4.9e-10  Score=71.62  Aligned_cols=73  Identities=14%  Similarity=0.077  Sum_probs=62.4

Q ss_pred             eccccccccccCCCCCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHH---HHhccccc
Q psy15540          7 WTSPAGDRLIAGEYPFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLI---IWSQSVSR   82 (87)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~---~~a~~~~~   82 (87)
                      ...+..|.+++   +++.++++.++..+.+.++..++.++.|++.||+|||+++..+..+..++.+++   ..++++..
T Consensus        44 ~~~~~~p~i~~---~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~~~~~l~~~~~~a~~~~~  119 (438)
T PRK10133         44 LNDILLPQFQQ---AFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTL  119 (438)
T ss_pred             HHHHHHHHHHH---HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhcCCHHH
Confidence            34455677766   899999999999999999999999999999999999999999999999988775   34566654

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=98.91  E-value=1.2e-09  Score=67.82  Aligned_cols=74  Identities=22%  Similarity=0.236  Sum_probs=64.6

Q ss_pred             eeccccccccccCCCCCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhccccc
Q psy15540          6 GWTSPAGDRLIAGEYPFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSVSR   82 (87)
Q Consensus         6 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~a~~~~~   82 (87)
                      +...|..|.+.+   +++.++++.++..+...++..++.++.|+++||+|||+.+..+..+..++......+++++.
T Consensus         8 ~~~~p~~~~~~~---~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~   81 (377)
T PRK11102          8 DMYLPALPVIAA---DFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQTIDQ   81 (377)
T ss_pred             HHHhccHHHHHH---HhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHccHHH
Confidence            344567777777   78999999999999999999999999999999999999999999999988888888777644

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=98.91  E-value=1.2e-09  Score=67.23  Aligned_cols=71  Identities=15%  Similarity=0.111  Sum_probs=62.2

Q ss_pred             ccccccccCCCCCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhcccccc
Q psy15540         10 PAGDRLIAGEYPFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSVSRH   83 (87)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~a~~~~~l   83 (87)
                      ...|.+.+   +++.++++.+++.+...++..++.++.|+++||+|||+.+..+..+..++.++..++++++.+
T Consensus        16 ~~~~~~~~---~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (379)
T TIGR00881        16 LAMPYLVE---EIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFSTSLWVM   86 (379)
T ss_pred             hhhHHHHH---HhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHhhhHHHH
Confidence            34456666   789999999999999999999999999999999999999999999999999888888776543

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=98.90  E-value=2.4e-09  Score=67.08  Aligned_cols=71  Identities=20%  Similarity=0.250  Sum_probs=61.7

Q ss_pred             cccccccccCCCCCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhccccc
Q psy15540          9 SPAGDRLIAGEYPFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSVSR   82 (87)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~a~~~~~   82 (87)
                      .+..|.+.+   +++.++.+.++..+...++..++.++.|+++||+|||+.+..+.....++......++++..
T Consensus        28 ~p~~~~i~~---~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~   98 (394)
T PRK11652         28 VPAIADMAR---DLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVALFAHSLTV   98 (394)
T ss_pred             hccHHHHHH---HhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHccHHH
Confidence            345566666   88999999999999999999999999999999999999999999888888888887776543

>PRK03699 putative transporter; Provisional

Probab=98.90  E-value=2.1e-09  Score=67.59  Aligned_cols=72  Identities=11%  Similarity=0.094  Sum_probs=62.3

Q ss_pred             cccccccccCCCCCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhcccccc
Q psy15540          9 SPAGDRLIAGEYPFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSVSRH   83 (87)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~a~~~~~l   83 (87)
                      .+..|.+.+   +++.++++.++..+...++..++.++.|++.||+|||+++..+.++..++.....++++++.+
T Consensus        27 g~~~~~i~~---~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~l~~~~~~~~~~   98 (394)
T PRK03699         27 GMVMGPIAE---YFNLPVSSMSNTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGFALMILAVAGLMFSHSLALF   98 (394)
T ss_pred             hhhhHHHHH---HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcchHHHH
Confidence            344566666   789999999999999999999999999999999999999999999988888888888776543

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=98.89  E-value=2.2e-09  Score=67.35  Aligned_cols=60  Identities=12%  Similarity=0.068  Sum_probs=50.3

Q ss_pred             ccccccccccCCCCCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHH
Q psy15540          8 TSPAGDRLIAGEYPFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVG   70 (87)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~   70 (87)
                      ..+..|.+.+   ++++++.+.+++.+.+.++..+++++.|+++||+|||+++..+......+
T Consensus        10 ~~~~lp~i~~---~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~   69 (368)
T TIGR00903        10 FSPVLSLVAE---DIDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAA   69 (368)
T ss_pred             HHhhHHHHHH---HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHH
Confidence            4566777777   89999999999999999999999999999999999998766555544443

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=98.88  E-value=2.2e-09  Score=67.55  Aligned_cols=71  Identities=20%  Similarity=0.234  Sum_probs=61.0

Q ss_pred             cccccccccCCCCCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhccccc
Q psy15540          9 SPAGDRLIAGEYPFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSVSR   82 (87)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~a~~~~~   82 (87)
                      .+..|.+.+   +++.++++.++..+.+.++..++.++.|+++||+|||+.+..+.....++.+....+++++.
T Consensus        33 ~~~~~~~~~---~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~  103 (406)
T PRK15402         33 QPGMLAVVE---DFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFFILTCLAILLAQSIEQ  103 (406)
T ss_pred             hcchHHHHH---HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHccHHH
Confidence            344555555   78999999999999999999999999999999999999999999888888888888777654

>TIGR00896 CynX cyanate transporter

Probab=98.88  E-value=3.1e-09  Score=65.80  Aligned_cols=70  Identities=10%  Similarity=0.047  Sum_probs=59.1

Q ss_pred             ccccccccccCCCCCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhcccc
Q psy15540          8 TSPAGDRLIAGEYPFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSVS   81 (87)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~a~~~~   81 (87)
                      ..+..|.+++   +++.++++.++..+...++..++.++.|+++||+|||+++..+.+...++.... .+++.+
T Consensus        19 ~~~~lp~l~~---~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~~~~~   88 (355)
T TIGR00896        19 VGPLLPQIRS---ALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-SAPGTA   88 (355)
T ss_pred             CcccHHHHHH---HhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-HhccHH
Confidence            4566777777   899999999999999999999999999999999999999999887777766655 444443

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>PRK11043 putative transporter; Provisional

Probab=98.88  E-value=2.3e-09  Score=67.29  Aligned_cols=71  Identities=25%  Similarity=0.264  Sum_probs=61.1

Q ss_pred             ccccccccCCCCCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhcccccc
Q psy15540         10 PAGDRLIAGEYPFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSVSRH   83 (87)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~a~~~~~l   83 (87)
                      |..|.+.+   +++.++++.++..++..++..++.++.|+++||+|||+.+..+..+..++.....++++++.+
T Consensus        27 p~~~~i~~---~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l   97 (401)
T PRK11043         27 PAFKAIQA---DLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWVESAAQL   97 (401)
T ss_pred             hhHHHHHH---HHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence            44455555   789999999999999999999999999999999999999999998888888888887776543

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=98.86  E-value=2e-09  Score=69.06  Aligned_cols=64  Identities=17%  Similarity=0.252  Sum_probs=54.5

Q ss_pred             ccccccccCCCCCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHH
Q psy15540         10 PAGDRLIAGEYPFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIW   76 (87)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~   76 (87)
                      ...|.+.+   +++.+..+.+++.+.+.++..++.++.|+++||+|||+++..+.++..+..+..+.
T Consensus        50 ~~~~~i~~---~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~  113 (467)
T PRK09556         50 AAQNDMIS---TYGLSTTELGMIGLGFSITYGVGKTLVGYYADGKNTKQFLPFLLILSAICMLGFGA  113 (467)
T ss_pred             hhhHHHHH---hcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhccCccchHHHHHHHHHHHHHHHHH
Confidence            44566666   89999999999999999999999999999999999999998887777766655554

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=98.84  E-value=2.9e-09  Score=65.12  Aligned_cols=70  Identities=24%  Similarity=0.352  Sum_probs=57.8

Q ss_pred             ccccc-ccccCCCCCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhcccc
Q psy15540          9 SPAGD-RLIAGEYPFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSVS   81 (87)
Q Consensus         9 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~a~~~~   81 (87)
                      .+..| .+.+   +++.++++.+++.+...++..++.++.|+++||+|||+++..+.++..++.....++++.+
T Consensus        16 ~~~~~~~~~~---~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~   86 (352)
T PF07690_consen   16 SPALPLYLAE---ELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAFASNFW   86 (352)
T ss_dssp             HHHHH-HHHC---CSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHCCHH
T ss_pred             HHHHHHHHHH---ccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhhhhhHH
Confidence            34455 5555   8899999999999999999999999999999999999999999999988866666655544

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>TIGR00893 2A0114 d-galactonate transporter

Probab=98.84  E-value=2.7e-09  Score=65.73  Aligned_cols=71  Identities=21%  Similarity=0.210  Sum_probs=61.6

Q ss_pred             ccccccccCCCCCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhcccccc
Q psy15540         10 PAGDRLIAGEYPFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSVSRH   83 (87)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~a~~~~~l   83 (87)
                      ...|.+++   +++.++.+.+++.+...++..++.++.|+++||+|||+.+..+..+..++....+++++++.+
T Consensus        15 ~~~~~~~~---~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (399)
T TIGR00893        15 FAAPMLQE---DLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAGAYVSL   85 (399)
T ss_pred             HhHHHHHH---hhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHHcCHHHH
Confidence            34455655   789999999999999999999999999999999999999999999988888888887776543

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=98.84  E-value=4.8e-09  Score=67.69  Aligned_cols=72  Identities=18%  Similarity=0.195  Sum_probs=61.5

Q ss_pred             cccccccccCCCCCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhcccccc
Q psy15540          9 SPAGDRLIAGEYPFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSVSRH   83 (87)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~a~~~~~l   83 (87)
                      .+..|.+++   +++++..+.++..+...++..++.++.|+++||+|||+++..+.+...++.++.++++++..+
T Consensus        56 ~~~~~~l~~---~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~s~~~l  127 (476)
T PLN00028         56 APLLPIIRD---NLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAVFCMSLVSSATGF  127 (476)
T ss_pred             HHHHHHHHH---HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence            344566666   889999999999999999999999999999999999999999988888888888887776543

>PRK03893 putative sialic acid transporter; Provisional

Probab=98.83  E-value=1.8e-09  Score=69.33  Aligned_cols=72  Identities=18%  Similarity=0.161  Sum_probs=62.2

Q ss_pred             ccccccccccCCCCCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhccccc
Q psy15540          8 TSPAGDRLIAGEYPFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSVSR   82 (87)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~a~~~~~   82 (87)
                      ..+..|.+.+   ++++++++.+++.+...++..++.++.|+++||+|||+.+..+..+..++.+...++++++.
T Consensus        39 ~~~~~~~i~~---~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~  110 (496)
T PRK03893         39 ITLVLTEVQG---EFGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIVLFSVGTLACGFAPGYWT  110 (496)
T ss_pred             HHHHHHHHHH---HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence            3445566666   78999999999999999999999999999999999999999999888888888888777654

>PRK11663 regulatory protein UhpC; Provisional

Probab=98.83  E-value=4.9e-09  Score=66.76  Aligned_cols=72  Identities=17%  Similarity=0.110  Sum_probs=63.2

Q ss_pred             cccccccccCCCCCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhcccccc
Q psy15540          9 SPAGDRLIAGEYPFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSVSRH   83 (87)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~a~~~~~l   83 (87)
                      +...|.+.+   +++.++++.+++.+...++..++.++.|++.||+|||+++..+.++..++.+..+++++++.+
T Consensus        43 ~~~~~~~~~---~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l  114 (434)
T PRK11663         43 NAAMPEMLA---DLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATGIINILFGFSSSLWAF  114 (434)
T ss_pred             HHhhHHHHH---hcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHHHHHHHHHHHhHHHHH
Confidence            344566666   789999999999999999999999999999999999999999999999999988888877644

>KOG0255|consensus

Probab=98.83  E-value=7.4e-09  Score=67.22  Aligned_cols=64  Identities=20%  Similarity=0.164  Sum_probs=57.2

Q ss_pred             CCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhccccccc
Q psy15540         21 PFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSVSRHG   84 (87)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~a~~~~~l~   84 (87)
                      .+..+.....+..+++.+|..+|++++|+++||+|||++++.+..+..++.+..++++|++.+.
T Consensus       112 ~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~~~~~~~  175 (521)
T KOG0255|consen  112 LVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAPNYWMFL  175 (521)
T ss_pred             eeeCcHhHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHhCcHHHHH
Confidence            3455666778899999999999999999999999999999999999999999999999987653

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=98.82  E-value=5.8e-09  Score=65.33  Aligned_cols=70  Identities=20%  Similarity=0.152  Sum_probs=61.0

Q ss_pred             ccccccccCCCCCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhccccc
Q psy15540         10 PAGDRLIAGEYPFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSVSR   82 (87)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~a~~~~~   82 (87)
                      +..|.+.+   +++.++++.++..+.+.++..++.++.|+++||+|||+.+..+..+..++......+++...
T Consensus        24 ~~lp~~~~---~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~~~~~~~   93 (392)
T PRK10473         24 VGLPRIAA---DLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSLAETSSL   93 (392)
T ss_pred             hhHHHHHH---HhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHHHhCcHHH
Confidence            45666666   78999999999999999999999999999999999999999999998888888887776543

>TIGR00900 2A0121 H+ Antiporter protein

Probab=98.81  E-value=2.3e-09  Score=65.81  Aligned_cols=68  Identities=24%  Similarity=0.142  Sum_probs=57.0

Q ss_pred             ccccccccccCCCCCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhc
Q psy15540          8 TSPAGDRLIAGEYPFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQ   78 (87)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~a~   78 (87)
                      ..+.+|.+..   +.+.++.+.+++.+...++..++.++.|+++||+|||+++..+..+..++.....++.
T Consensus        18 ~~~~~~~~~~---~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~   85 (365)
T TIGR00900        18 TQVALPLYVL---AGTGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFVA   85 (365)
T ss_pred             HHHHHHHHHH---HhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHHHH
Confidence            3344555555   6788889999999999999999999999999999999999998888877777776665

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=98.79  E-value=4.8e-09  Score=63.83  Aligned_cols=73  Identities=29%  Similarity=0.355  Sum_probs=61.8

Q ss_pred             eccccccccccCCCCCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhccccc
Q psy15540          7 WTSPAGDRLIAGEYPFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSVSR   82 (87)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~a~~~~~   82 (87)
                      ...+..|.+.+   +.+.++++.++..+...++..++.++.|+++||+|||+.+..+.....++.+.....++++.
T Consensus        17 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~   89 (352)
T cd06174          17 LLSPALPLLAE---DLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAFASSLWL   89 (352)
T ss_pred             hhHhhHHHHHH---HcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHHHHHHHHHhccHHH
Confidence            34455566665   67889999999999999999999999999999999999999999999988888887766543

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>TIGR00899 2A0120 sugar efflux transporter

Probab=98.78  E-value=5.4e-09  Score=64.70  Aligned_cols=76  Identities=11%  Similarity=0.117  Sum_probs=58.7

Q ss_pred             eeeecccccccc-ccCCCCCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHH-HHHHHHHHHHHHHHhcccc
Q psy15540          4 ILGWTSPAGDRL-IAGEYPFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLL-LAVPTLVGWGLIIWSQSVS   81 (87)
Q Consensus         4 ~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~-~~~~~~~~~~~~~~a~~~~   81 (87)
                      ..+...+.+|.. ++   +++.++.+.+++.+.+.+...+..++.|.++||+|||+.++. +.....++....+++++++
T Consensus        12 ~~~~~~~~l~~~l~~---~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~   88 (375)
T TIGR00899        12 AGALQFPTLSLFLSE---EVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALACLLFAWNRNYF   88 (375)
T ss_pred             HHHHHhhHHHHHHHc---ccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHhcchHH
Confidence            445556666654 44   789999999999999999889999999999999999887665 4555556667777777765


Q ss_pred             c
Q psy15540         82 R   82 (87)
Q Consensus        82 ~   82 (87)
                      .
T Consensus        89 ~   89 (375)
T TIGR00899        89 L   89 (375)
T ss_pred             H
Confidence            4

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=98.78  E-value=4e-09  Score=66.14  Aligned_cols=67  Identities=15%  Similarity=0.126  Sum_probs=54.7

Q ss_pred             eecccccccc-ccCCCCCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHH
Q psy15540          6 GWTSPAGDRL-IAGEYPFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLII   75 (87)
Q Consensus         6 g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~   75 (87)
                      +...+.+|.. ++   +++.++++.++..+...++..++.++.|+++||+|||+++..+.++..++.+...
T Consensus        32 ~~~~~~l~~~i~~---~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~   99 (399)
T PRK05122         32 GLPLAVLPGYVHD---QLGFSAFLAGLVISLQYLATLLSRPHAGRYADTLGPKKAVVFGLCGCALSGLLYL   99 (399)
T ss_pred             HHHHHHHHHHHHH---hcCccHHHHHHHHHHHHHHHHHhchhhHhHHhccCCcchHHHHHHHHHHHHHHHH
Confidence            3344555553 34   7889999999999999999999999999999999999999998887766555443

>TIGR00895 2A0115 benzoate transport

Probab=98.77  E-value=6.9e-09  Score=64.31  Aligned_cols=70  Identities=26%  Similarity=0.304  Sum_probs=59.9

Q ss_pred             ccccccccCCCCCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhccccc
Q psy15540         10 PAGDRLIAGEYPFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSVSR   82 (87)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~a~~~~~   82 (87)
                      ...|.+.+   +++.++.+.+++.+...++..++.++.|+++||+|||+.+..+..+..++.....++++++.
T Consensus        38 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  107 (398)
T TIGR00895        38 FAAPAISA---EWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILLFSVFTLLCALATNVTQ  107 (398)
T ss_pred             hhHHHHhh---ccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHccchHH
Confidence            34555555   78889999999999999999999999999999999999999999888888888887776543

>PRK10504 putative transporter; Provisional

Probab=98.77  E-value=5.3e-09  Score=66.94  Aligned_cols=71  Identities=18%  Similarity=0.169  Sum_probs=60.5

Q ss_pred             cccccccccCCCCCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhccccc
Q psy15540          9 SPAGDRLIAGEYPFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSVSR   82 (87)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~a~~~~~   82 (87)
                      ++..|.+.+   +++.++.+.++..+.+.++..++.++.|+++||+|||+++..+..+..++.+.+.++++.+.
T Consensus        30 ~~~~p~~~~---~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~  100 (471)
T PRK10504         30 NTALPSMAQ---SLGESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLGSLFCALSGTLNE  100 (471)
T ss_pred             HHHHHHHHH---HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHhCCHHH
Confidence            445666666   78999999999999999999999999999999999999999988888888887777776543

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=98.77  E-value=1e-08  Score=65.78  Aligned_cols=69  Identities=23%  Similarity=0.231  Sum_probs=59.8

Q ss_pred             ccccccCCCCCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhcccccc
Q psy15540         12 GDRLIAGEYPFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSVSRH   83 (87)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~a~~~~~l   83 (87)
                      .|.+..   +++.+.++.++..+...++..++.++.|+++||+|||++++.+.++..++.+.++++++++.+
T Consensus        42 ~~~i~~---~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l  110 (455)
T TIGR00892        42 FKELQQ---IFQATYSETAWISSIMLAVLYAGGPISSILVNRFGCRPVVIAGGLLASLGMILASFSSNVIEL  110 (455)
T ss_pred             HHHHHH---HhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHcCchHHHHhhHHHHHHHHHHHHHhhhHHHH
Confidence            445555   789999999999999999889999999999999999999999998888888888888776543

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=98.76  E-value=5.2e-09  Score=67.61  Aligned_cols=50  Identities=22%  Similarity=0.066  Sum_probs=46.0

Q ss_pred             HHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhccccc
Q psy15540         33 GSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSVSR   82 (87)
Q Consensus        33 ~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~a~~~~~   82 (87)
                      .++..++..++.++.|+++||+|||+++..+.++..++.+.+++++++..
T Consensus        63 ~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~~l~~i~~~~~a~~~~~~~  112 (490)
T PRK10642         63 FSVPFLIRPLGGLFFGMLGDKYGRQKILAITIVIMSISTFCIGLIPSYAT  112 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhcccHHH
Confidence            46677889999999999999999999999999999999999999999764

>PRK12382 putative transporter; Provisional

Probab=98.73  E-value=1.8e-08  Score=63.15  Aligned_cols=62  Identities=15%  Similarity=0.073  Sum_probs=51.6

Q ss_pred             eccccccc-cccCCCCCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHH
Q psy15540          7 WTSPAGDR-LIAGEYPFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGW   71 (87)
Q Consensus         7 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~   71 (87)
                      ...|.+|. +++   +++.++++.+++.+.+.++..+++++.|+++||+|||+.+..+.+...++.
T Consensus        33 ~~~p~l~~~l~~---~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~   95 (392)
T PRK12382         33 LPLPVIPLFVHH---DLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGLAG   95 (392)
T ss_pred             HHhhhhhHHHHH---hcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHH
Confidence            34455554 345   789999999999999999999999999999999999999998877665544

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=98.73  E-value=2.4e-08  Score=63.04  Aligned_cols=56  Identities=25%  Similarity=0.353  Sum_probs=50.0

Q ss_pred             cccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhcc
Q psy15540         24 VTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQS   79 (87)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~a~~   79 (87)
                      .+..+.+++.+.+.++..++.++.|+++||+|||+++..+..+..++.++.....+
T Consensus        68 ~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~  123 (481)
T TIGR00879        68 YSSSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAAF  123 (481)
T ss_pred             CChhHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHHHHHHHHHHHHHhcc
Confidence            44789999999999999999999999999999999999999999888888865543

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters

Probab=98.70  E-value=6.5e-08  Score=49.23  Aligned_cols=72  Identities=14%  Similarity=0.090  Sum_probs=64.6

Q ss_pred             cccccccccCCCCCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhcccccc
Q psy15540          9 SPAGDRLIAGEYPFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSVSRH   83 (87)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~a~~~~~l   83 (87)
                      .|.+|.+++   +.+++.++.+++.+...+|..+|++....+.++.++|+.+..+.+...+....+++.++...+
T Consensus        12 TplLP~M~~---~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~~~~~~w   83 (85)
T PF06779_consen   12 TPLLPLMQA---DGGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALTHSFWLW   83 (85)
T ss_pred             HhHhHHHHH---hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhchHHH
Confidence            467788888   899999999999999999999999999999999888899999999999999999988876543

Note that many members are hypothetical proteins.

>KOG1330|consensus

Probab=98.69  E-value=4.6e-09  Score=67.44  Aligned_cols=65  Identities=17%  Similarity=0.160  Sum_probs=60.4

Q ss_pred             CCCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhccccccc
Q psy15540         20 YPFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSVSRHG   84 (87)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~a~~~~~l~   84 (87)
                      +.++++++..+++.+.+.+..++..|++|+++||++||+++.++..+..++.+.+++...++++.
T Consensus        61 ~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW~~Av~~~~fs~~Fwq~~  125 (493)
T KOG1330|consen   61 TYFNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFIWTLAVFASGFSNHFWQVL  125 (493)
T ss_pred             HhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHHHHHHHHHHHHHHHHHHH
Confidence            37899999999999999999999999999999999999999999999999999999987777653

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=98.68  E-value=1.9e-08  Score=63.07  Aligned_cols=75  Identities=23%  Similarity=0.168  Sum_probs=58.5

Q ss_pred             eeccccccccccCCCCCccccch-----hHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhccc
Q psy15540          6 GWTSPAGDRLIAGEYPFPVTESD-----LSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSV   80 (87)
Q Consensus         6 g~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~a~~~   80 (87)
                      +...+.+|.+.+   +++.+..+     .++..+...++..++.++.|+++||+|||+.+..+.....++.+....++++
T Consensus        31 ~~~~~~l~~~~~---~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~  107 (408)
T PRK09874         31 SLVMPFLPLYVE---QLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIMLLRSALGMGIVMVLMGLAQNI  107 (408)
T ss_pred             HHhhhhHHHHHH---HhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHHHHHHHHHHHHHHHHHhhH
Confidence            344556666666   66666544     4778888889999999999999999999999999988888888777777665


Q ss_pred             ccc
Q psy15540         81 SRH   83 (87)
Q Consensus        81 ~~l   83 (87)
                      +.+
T Consensus       108 ~~~  110 (408)
T PRK09874        108 WQF  110 (408)
T ss_pred             HHH
Confidence            543

>PRK10054 putative transporter; Provisional

Probab=98.68  E-value=3.3e-08  Score=62.45  Aligned_cols=62  Identities=19%  Similarity=0.145  Sum_probs=55.3

Q ss_pred             CCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhccccc
Q psy15540         21 PFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSVSR   82 (87)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~a~~~~~   82 (87)
                      +++.++.+.++..+...++..+.+++.|+++||+|||+++..+.....++.+...++++++.
T Consensus        37 ~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~~~~~~~~~   98 (395)
T PRK10054         37 QYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAIPLVNNVTL   98 (395)
T ss_pred             HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHhHHHH
Confidence            68999999999999999999999999999999999999999988888888877777777643

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=98.64  E-value=1.9e-08  Score=63.99  Aligned_cols=51  Identities=22%  Similarity=0.174  Sum_probs=43.8

Q ss_pred             HHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhcccc
Q psy15540         31 FIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSVS   81 (87)
Q Consensus        31 ~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~a~~~~   81 (87)
                      ...+...++..++.++.|+++||+|||+++..+..+..++.+.+++++++.
T Consensus        67 ~~~~~~~~~~~ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~  117 (432)
T PRK10406         67 GVFAAGFLMRPIGGWLFGRIADKHGRKKSMLISVCMMCFGSLVIACLPGYE  117 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhhcCCch
Confidence            334455667779999999999999999999999999999999999988764

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=98.60  E-value=8e-08  Score=61.55  Aligned_cols=64  Identities=14%  Similarity=0.131  Sum_probs=55.7

Q ss_pred             cccccccCCCCCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhc
Q psy15540         11 AGDRLIAGEYPFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQ   78 (87)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~a~   78 (87)
                      ..|.+.+   + +.+..+.++..+...++..+++++.|+++||+|||+++..+.++..+..+..++++
T Consensus        51 ~~p~l~~---~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~i~~~~~~~~~  114 (452)
T PRK11273         51 AMPYLVE---Q-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVP  114 (452)
T ss_pred             hhHHHHH---c-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHHHHHHHHHhhh
Confidence            4455555   6 88999999999999999999999999999999999999999988888887777653

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=98.59  E-value=5.2e-08  Score=63.33  Aligned_cols=59  Identities=17%  Similarity=0.085  Sum_probs=53.7

Q ss_pred             CCccccchhHHHHHHhhHhhhhhhhhhhhhhhh-hchhHHHHHHHHHHHHHHHHHHHhcc
Q psy15540         21 PFPVTESDLSFIGSSMALGAVFGSPVVGNLVDT-VGRKNTMLLLAVPTLVGWGLIIWSQS   79 (87)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~grr~~~~~~~~~~~~~~~~~~~a~~   79 (87)
                      +++.++++..+..+.+........++.|+++|| +|||+++..+.++..++.+.++++.+
T Consensus        44 ~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g~~~~~~~~~  103 (489)
T PRK10207         44 QLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAIGYFMTGMSLL  103 (489)
T ss_pred             HcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHHHHHHHHHhcc
Confidence            688899999999999888888889999999999 99999999999999999988888765

>TIGR00897 2A0118 polyol permease family

Probab=98.59  E-value=5.2e-08  Score=61.50  Aligned_cols=63  Identities=11%  Similarity=0.114  Sum_probs=53.5

Q ss_pred             cccccccccCCCCCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHH
Q psy15540          9 SPAGDRLIAGEYPFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLI   74 (87)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~   74 (87)
                      .+..+.+.+   +++.++++.++..+.+.++..++.++.|+++||+|||+.+..+..+..++.+.+
T Consensus        33 ~~~~~~~~~---~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~~~   95 (402)
T TIGR00897        33 QGWLSPFLK---ALGLSPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGHAAF   95 (402)
T ss_pred             HHhHHHHHH---HhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHH
Confidence            334455555   678999999999999999999999999999999999999999888888776554

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=98.58  E-value=1e-07  Score=60.15  Aligned_cols=59  Identities=15%  Similarity=0.271  Sum_probs=51.5

Q ss_pred             CCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhcc
Q psy15540         21 PFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQS   79 (87)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~a~~   79 (87)
                      +++.++.+.++..+.+.+...+..++.|+++||+|||+++..+..+..++.+.+.++.+
T Consensus        32 ~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~~~~~   90 (393)
T PRK11195         32 ELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLMLFGIH   90 (393)
T ss_pred             HcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHHHHHHH
Confidence            67778888999999999999999999999999999999999999888877766655444

>PRK15075 citrate-proton symporter; Provisional

Probab=98.55  E-value=1.2e-07  Score=60.48  Aligned_cols=70  Identities=17%  Similarity=0.208  Sum_probs=52.3

Q ss_pred             ccccccccCCCCCccccchhHHH-HHHh-----hHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhccccc
Q psy15540         10 PAGDRLIAGEYPFPVTESDLSFI-GSSM-----ALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSVSR   82 (87)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~-----~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~a~~~~~   82 (87)
                      ...|.+.+   +++.++.+.+.. .+..     .++..+++++.|+++||+|||+.++.+..+..++...+++++++..
T Consensus        36 ~~~~~i~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~l~~~~~~~~~  111 (434)
T PRK15075         36 FYATAIAK---TFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRRKGLIVTLSIMASGTLLIAFVPGYAT  111 (434)
T ss_pred             HHHHHHHH---HhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHhCCcHHH
Confidence            34455555   777777665433 2222     2333568899999999999999999999999999999999988653

>PF12832 MFS_1_like: MFS_1 like family

Probab=98.55  E-value=8.9e-08  Score=47.98  Aligned_cols=46  Identities=20%  Similarity=0.368  Sum_probs=42.1

Q ss_pred             CCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHH
Q psy15540         21 PFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVP   66 (87)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~   66 (87)
                      +.++++.+.+.+.++..+...++++++|.++||++|++........
T Consensus        29 ~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~   74 (77)
T PF12832_consen   29 QLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLF   74 (77)
T ss_pred             hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHH
Confidence            7899999999999999999999999999999999999987766554

>TIGR00889 2A0110 nucleoside transporter

Probab=98.54  E-value=1.1e-07  Score=60.51  Aligned_cols=61  Identities=10%  Similarity=0.100  Sum_probs=51.2

Q ss_pred             CCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhch-hHHHHHHHHHHHHHHHHHHHhcccc
Q psy15540         21 PFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGR-KNTMLLLAVPTLVGWGLIIWSQSVS   81 (87)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr-r~~~~~~~~~~~~~~~~~~~a~~~~   81 (87)
                      +++.+.++.+++.+...++..+++++.|.++||+|| |+++.++.....+......+.++++
T Consensus        32 ~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~~~~~~~~~~~   93 (418)
T TIGR00889        32 TLHFSGAEIGWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGALLLFFAAQVTTPA   93 (418)
T ss_pred             hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhcCHH
Confidence            689999999999999999999999999999999965 7777777777767666666666544

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=98.53  E-value=1.1e-07  Score=61.59  Aligned_cols=60  Identities=17%  Similarity=0.081  Sum_probs=54.9

Q ss_pred             CccccchhHHHHHHhhHhhhhhhhhhhhhhhh-hchhHHHHHHHHHHHHHHHHHHHhcccc
Q psy15540         22 FPVTESDLSFIGSSMALGAVFGSPVVGNLVDT-VGRKNTMLLLAVPTLVGWGLIIWSQSVS   81 (87)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~grr~~~~~~~~~~~~~~~~~~~a~~~~   81 (87)
                      ++.++.+.+++.+.+.++..+++++.|+++|| +|||+++..+.++..++.+..++++++.
T Consensus        43 lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~~~~~~~~~~~  103 (475)
T TIGR00924        43 LGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFMLAMSIYPD  103 (475)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhcccHh
Confidence            78999999999999999999999999999999 8999999999999999888888776543

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=98.52  E-value=2e-07  Score=60.36  Aligned_cols=63  Identities=8%  Similarity=0.040  Sum_probs=56.2

Q ss_pred             CCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHh-----cccccc
Q psy15540         21 PFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWS-----QSVSRH   83 (87)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~a-----~~~~~l   83 (87)
                      +++++++|.+++.++..++..+..++.|++.||+|.|+++..+.++..+..+..+++     ++++.+
T Consensus        64 ~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~i~~~~~~~a~~~~~~s~~~l  131 (462)
T PRK15034         64 GFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILIIPCVWLGIAVQNPNTPFGIF  131 (462)
T ss_pred             hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHcccCCCHHHH
Confidence            689999999999999999999998999999999999999999999999888888876     555543

>TIGR00805 oat sodium-independent organic anion transporter

Probab=98.48  E-value=1.2e-08  Score=68.15  Aligned_cols=71  Identities=14%  Similarity=0.101  Sum_probs=65.1

Q ss_pred             eeeccccccccccCCCCCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhc
Q psy15540          5 LGWTSPAGDRLIAGEYPFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQ   78 (87)
Q Consensus         5 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~a~   78 (87)
                      .++.++.++.+++   ++++++.+.+++.+.+.++..++.++.+++.||.|||+.+.++.++..++.+++++.+
T Consensus        49 ~g~~~~~l~~iek---~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~alph  119 (633)
T TIGR00805        49 NGLVNSSLTTIER---RFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLLSLPH  119 (633)
T ss_pred             HHHHHhhchhhhh---hhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHHhChH
Confidence            4677778888887   8999999999999999999999999999999999999999999999999999988764

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=98.48  E-value=2.9e-07  Score=58.28  Aligned_cols=63  Identities=8%  Similarity=-0.053  Sum_probs=56.5

Q ss_pred             CCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhcccccc
Q psy15540         21 PFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSVSRH   83 (87)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~a~~~~~l   83 (87)
                      +.+.++.+.+...+...+...+..++.|+++||+|||+.+..+..+..++.+....+++++.+
T Consensus        40 ~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~l  102 (400)
T PRK11646         40 QLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAIAHEPWLL  102 (400)
T ss_pred             HhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHhccHHHH
Confidence            678899999999999999888889999999999999999999999999999888887776543

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=98.45  E-value=5.9e-07  Score=58.33  Aligned_cols=57  Identities=21%  Similarity=0.252  Sum_probs=50.3

Q ss_pred             ccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhcc
Q psy15540         23 PVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQS   79 (87)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~a~~   79 (87)
                      +.++.+.+++.+...++..+++++.++++||+|||+++..+.++..++.++++++++
T Consensus        52 ~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~~~~~~~~~v~~~~~~~~~~  108 (502)
T TIGR00887        52 PLPSSVSAAVNGSASIGTLAGQLFFGWLADKLGRKRVYGMELIIMIIATVASGLSPG  108 (502)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHccC
Confidence            445567789999999999999999999999999999999999999988888887755

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>TIGR00806 rfc RFC reduced folate carrier

Probab=98.43  E-value=2.3e-07  Score=60.37  Aligned_cols=63  Identities=21%  Similarity=0.136  Sum_probs=58.6

Q ss_pred             CCccccch-hHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhcccccc
Q psy15540         21 PFPVTESD-LSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSVSRH   83 (87)
Q Consensus        21 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~a~~~~~l   83 (87)
                      ++++++++ .+.+.+.+..+..+..++.|+++||+|.|+++..+.+...+..++.+++.+...+
T Consensus        55 elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~Sl~~L  118 (511)
T TIGR00806        55 VLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLGTSVWHM  118 (511)
T ss_pred             HcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88999999 9999999999999999999999999999999999999999999999988776544

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=98.41  E-value=1.7e-07  Score=59.56  Aligned_cols=75  Identities=24%  Similarity=0.141  Sum_probs=68.1

Q ss_pred             ceeeeeccccccccccCCCCCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhcc
Q psy15540          2 GTILGWTSPAGDRLIAGEYPFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQS   79 (87)
Q Consensus         2 g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~a~~   79 (87)
                      |+....+.+.+|.+++   .++++..+.+++...+.-+..+..+..+.+.+|+|+|+.++.+..+..++..++.-+.+
T Consensus        26 G~~~~l~diLip~l~~---~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~~lF~pAa~  100 (422)
T COG0738          26 GFITCLNDILIPHLKE---VFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALFWPAAS  100 (422)
T ss_pred             HHHhhcchhhHHHHHH---HhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhh
Confidence            5666778888999988   89999999999999999999999999999999999999999999999999998865543

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=98.40  E-value=8.7e-07  Score=56.86  Aligned_cols=57  Identities=21%  Similarity=0.076  Sum_probs=51.2

Q ss_pred             CCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHh
Q psy15540         21 PFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWS   77 (87)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~a   77 (87)
                      +++++..+.+++.+.+.++..++.++.|+++||+|||+++..+.++..++.+...++
T Consensus        70 ~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~  126 (465)
T TIGR00894        70 NFKWSGALQGLILSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWA  126 (465)
T ss_pred             CCCCCHHHhhHHHHHHHHHHHHHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHH
Confidence            678899999999999999999999999999999999999999988888877776543

>PRK09528 lacY galactoside permease; Reviewed

Probab=98.39  E-value=2.6e-07  Score=58.54  Aligned_cols=48  Identities=25%  Similarity=0.273  Sum_probs=42.8

Q ss_pred             CCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHH
Q psy15540         21 PFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTL   68 (87)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~   68 (87)
                      +++.++.+.+...+...++..+++++.|+++||+|||+++..+.....
T Consensus        40 ~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~~~~~~~   87 (420)
T PRK09528         40 INGLSGTDTGIIFSANSLFALLFQPLYGLISDKLGLKKHLLWIISGLL   87 (420)
T ss_pred             hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence            589999999999999999999999999999999999999877554443

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=98.39  E-value=3.3e-07  Score=57.68  Aligned_cols=48  Identities=21%  Similarity=0.320  Sum_probs=42.8

Q ss_pred             CCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHH
Q psy15540         21 PFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTL   68 (87)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~   68 (87)
                      +++.++.+.++..+...+...++.++.|+++||+|||+.+..+.....
T Consensus        32 ~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~   79 (396)
T TIGR00882        32 VNGLSKTDTGIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIISGLL   79 (396)
T ss_pred             hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence            578999999999999999999999999999999999999887655443

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=98.38  E-value=3.2e-08  Score=62.94  Aligned_cols=58  Identities=28%  Similarity=0.395  Sum_probs=52.2

Q ss_pred             cchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhc---ccccc
Q psy15540         26 ESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQ---SVSRH   83 (87)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~a~---~~~~l   83 (87)
                      +.+.++..+...+|..+|+++.|.++||+|||++++.+..+..++.++..+++   ++..+
T Consensus        45 ~~~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  105 (451)
T PF00083_consen   45 SLLSSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISALLMIIGSILIAFAPSYNNFWML  105 (451)
T ss_pred             HHHHHHHHHHHHhhhcccccccccccccccccccccccccccccccccccccccccccccc
Confidence            34578899999999999999999999999999999999999999999999998   66543

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=98.36  E-value=3.8e-07  Score=60.69  Aligned_cols=61  Identities=20%  Similarity=0.302  Sum_probs=53.9

Q ss_pred             CCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhccccc
Q psy15540         21 PFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSVSR   82 (87)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~a~~~~~   82 (87)
                      +.+- .+...|+.+...++..+.+++.|.++|.+|||..++.+.++..++.++++-++|...
T Consensus        73 diG~-~~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA~~~~~  133 (599)
T PF06609_consen   73 DIGG-SDNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATAQNMNT  133 (599)
T ss_pred             hcCC-CccchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcCCcHHH
Confidence            5553 467788999999999999999999999999999999999999999999998887643

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>KOG2504|consensus

Probab=98.36  E-value=6.3e-07  Score=58.77  Aligned_cols=64  Identities=20%  Similarity=0.280  Sum_probs=59.5

Q ss_pred             CCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhccccccc
Q psy15540         21 PFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSVSRHG   84 (87)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~a~~~~~l~   84 (87)
                      +++.+.++.+|+.++......+..|+.+.+.||+|.|.+.+.+.++..++.++.+++.+.+++.
T Consensus        75 ~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i~G~~v~~~g~~lssF~~~i~~l~  138 (509)
T KOG2504|consen   75 YFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRFGCRTVMIAGGLVAALGLLLSSFATSLWQLY  138 (509)
T ss_pred             HhCCCccHHHHHHHHHHHHHHHhccHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence            7788888899999999999999999999999999999999999999999999999999987654

>KOG2615|consensus

Probab=98.33  E-value=9.8e-07  Score=56.12  Aligned_cols=57  Identities=26%  Similarity=0.350  Sum_probs=51.0

Q ss_pred             cchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhccccc
Q psy15540         26 ESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSVSR   82 (87)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~a~~~~~   82 (87)
                      ..-.+.+.+.+.+...+.++.+|-++||+|||.++..++....+...+.+.+.|+..
T Consensus        67 ~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~F~a  123 (451)
T KOG2615|consen   67 VFYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSRNFAA  123 (451)
T ss_pred             chhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345688899999999999999999999999999999999999999988888888733

>PTZ00207 hypothetical protein; Provisional

Probab=98.31  E-value=3.2e-07  Score=61.02  Aligned_cols=62  Identities=18%  Similarity=0.128  Sum_probs=50.7

Q ss_pred             ccccccCCCCCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHh
Q psy15540         12 GDRLIAGEYPFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWS   77 (87)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~a   77 (87)
                      .+.+.+   +++++..+.+++.+.... .....++.|++.||+|||+++.++.++..++.++++++
T Consensus        50 s~~L~~---~lgls~~~l~~i~svg~~-~g~~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala  111 (591)
T PTZ00207         50 SGAMQA---RYNLTQRDLSTITTVGIA-VGYFLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALT  111 (591)
T ss_pred             HHHHHH---HhCcCHHHHHHHHHHHHH-HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHH
Confidence            345555   789999999988876433 34456678999999999999999999999999999887

>PRK09952 shikimate transporter; Provisional

Probab=98.31  E-value=1.6e-06  Score=55.57  Aligned_cols=48  Identities=27%  Similarity=0.218  Sum_probs=42.4

Q ss_pred             HhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhccccc
Q psy15540         35 SMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSVSR   82 (87)
Q Consensus        35 ~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~a~~~~~   82 (87)
                      +..++..++.++.|+++||+|||+++..+..+..++.+++++++++..
T Consensus        72 ~~~~~~~~g~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~  119 (438)
T PRK09952         72 VGFLFRPLGGVVFGHFGDRLGRKRMLMLTVWMMGIATALIGLLPSFST  119 (438)
T ss_pred             HHHHHHhhHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhcCCcHHH
Confidence            345667788999999999999999999999999999999999998763

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=98.30  E-value=9e-07  Score=56.53  Aligned_cols=56  Identities=13%  Similarity=0.129  Sum_probs=49.9

Q ss_pred             CccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHh
Q psy15540         22 FPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWS   77 (87)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~a   77 (87)
                      .+.++++.++..+.+.++..++.++.|+++||+|||+.+..+..+..++.+.....
T Consensus        56 ~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~  111 (438)
T TIGR00712        56 QGFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAAVMLLMGFV  111 (438)
T ss_pred             cCCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHHHHHHHhcc
Confidence            48899999999999999999999999999999999999998888888777766543

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=98.27  E-value=9.7e-07  Score=57.69  Aligned_cols=56  Identities=16%  Similarity=0.098  Sum_probs=49.1

Q ss_pred             CCccccchhHHHHHHhhHhhhhhhhhhhhhhhhh-chhHHHHHHHHHHHHHHHHHHH
Q psy15540         21 PFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTV-GRKNTMLLLAVPTLVGWGLIIW   76 (87)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-grr~~~~~~~~~~~~~~~~~~~   76 (87)
                      +++.++.+.+.+.+.+.....++++++|+++||+ |||+++..+.++..++......
T Consensus        39 ~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~~   95 (493)
T PRK15462         39 QLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGA   95 (493)
T ss_pred             hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHH
Confidence            5788999999999999999999999999999999 9999999998888877665543

>KOG0569|consensus

Probab=98.26  E-value=2.5e-06  Score=55.64  Aligned_cols=50  Identities=34%  Similarity=0.403  Sum_probs=43.6

Q ss_pred             hHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhc
Q psy15540         29 LSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQ   78 (87)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~a~   78 (87)
                      .+...+++.+|.++|+...++++||+|||..+..+.++...+...+.++.
T Consensus        62 wS~~vs~f~iG~~~Gs~~~~~la~~~GRK~~l~~~~~l~~~~~~~~~~s~  111 (485)
T KOG0569|consen   62 WSLIVSIFFIGGMIGSFSSGLLADRFGRKNALLLSNLLAVLAALLMGLSK  111 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHH
Confidence            57778889999999999999999999999999998888888777776553

>TIGR00883 2A0106 metabolite-proton symporter

Probab=98.25  E-value=3.9e-06  Score=51.96  Aligned_cols=58  Identities=22%  Similarity=0.285  Sum_probs=44.8

Q ss_pred             cccchhHHHHHHh-----hHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhcccc
Q psy15540         24 VTESDLSFIGSSM-----ALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSVS   81 (87)
Q Consensus        24 ~~~~~~~~~~~~~-----~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~a~~~~   81 (87)
                      .++++.+...+..     .++..+++++.|+++||+|||+++..+..+..++...+++++++.
T Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~   89 (394)
T TIGR00883        27 SGDPLVALLATFATFAAGFLARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIGLLPSYA   89 (394)
T ss_pred             CCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhCCChh
Confidence            4555555544432     233456889999999999999999999999999999988888764

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=98.24  E-value=1e-06  Score=56.25  Aligned_cols=70  Identities=17%  Similarity=0.165  Sum_probs=61.2

Q ss_pred             cccccccccCCCCCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhcccc
Q psy15540          9 SPAGDRLIAGEYPFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSVS   81 (87)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~a~~~~   81 (87)
                      +++.+.+..   +++++++|.+++.++..+...+..++.|.+.||+|.|+....+.++..+-.+..+++..+.
T Consensus        34 s~l~~~i~~---~~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~~IP~~~~~~a~~~~  103 (417)
T COG2223          34 SPLGVFIKS---DFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLLLIPCLGLAFAVTYP  103 (417)
T ss_pred             HHHHhhhcc---ccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHHHHHHHHHHHHccCC
Confidence            344455555   8999999999999999999999999999999999999999999999998888888877654

>KOG0252|consensus

Probab=98.23  E-value=2.6e-06  Score=55.33  Aligned_cols=55  Identities=22%  Similarity=0.264  Sum_probs=48.0

Q ss_pred             cccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhc
Q psy15540         24 VTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQ   78 (87)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~a~   78 (87)
                      .++...+.......+|..+|+++.|++.||+|||+++-...++..++++.+++..
T Consensus        81 ~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~GRK~vYG~~liImIi~t~~~~~s~  135 (538)
T KOG0252|consen   81 YPSGVLALVNAAALVGTIFGQLFFGWLGDKFGRKKVYGKELIIMIICSALSGLSV  135 (538)
T ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHHHHhccCC
Confidence            4555678888899999999999999999999999999999999999988666544

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=98.23  E-value=6.8e-07  Score=57.22  Aligned_cols=72  Identities=19%  Similarity=0.141  Sum_probs=63.8

Q ss_pred             cccccccCCCCCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhcccccccc
Q psy15540         11 AGDRLIAGEYPFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSVSRHGS   85 (87)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~a~~~~~l~~   85 (87)
                      ..|.+.+   +.+++.+|.+.+.+.+.+...++-.+.|.++||.++|..+..++++..+..++++++++...+.+
T Consensus        51 a~p~l~e---~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~gLilsai~nil~Gfs~s~~~~~~  122 (448)
T COG2271          51 AMPALIE---DGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLILSAIVNILFGFSPSLFLFAV  122 (448)
T ss_pred             ccHHHHH---hcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeehHHHHHHHHHHHHHhhhhHHHHHHH
Confidence            3455665   77799999999999999999999999999999999999999999999999999999887665544

>KOG2532|consensus

Probab=98.18  E-value=5e-06  Score=54.11  Aligned_cols=61  Identities=18%  Similarity=0.229  Sum_probs=56.9

Q ss_pred             CCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhcccc
Q psy15540         21 PFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSVS   81 (87)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~a~~~~   81 (87)
                      +++.++++.+++.+....|..+++...++++||+|-|+++..+.++..+.+++...+.+..
T Consensus        67 ~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~  127 (466)
T KOG2532|consen   67 EYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIG  127 (466)
T ss_pred             eecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            6788999999999999999999999999999999999999999999999999998876543

>TIGR00901 2A0125 AmpG-related permease

Probab=98.17  E-value=2.4e-06  Score=52.93  Aligned_cols=72  Identities=22%  Similarity=0.211  Sum_probs=51.5

Q ss_pred             ceeeeeccccccccccCCCCCccccchhHHHHHHhhHhhhhhhhhhhhhhhhh-----chhHHH-HHHHHHHHHHHHHHH
Q psy15540          2 GTILGWTSPAGDRLIAGEYPFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTV-----GRKNTM-LLLAVPTLVGWGLII   75 (87)
Q Consensus         2 g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-----grr~~~-~~~~~~~~~~~~~~~   75 (87)
                      |+.++..++..|.+.+   +++++.++.++..+. .+...+ .+++|+++||+     |||+.+ +.+.+...+.....+
T Consensus         1 ~~~~~~~~~~~~~~~~---~~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~   75 (356)
T TIGR00901         1 GLPLGLVGNTLPYWLR---SKNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILS   75 (356)
T ss_pred             CCCchhHHhHHHHHHH---HcCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHH
Confidence            4556677778888888   889999999999755 333334 88999999998     898875 455555555555555


Q ss_pred             Hhc
Q psy15540         76 WSQ   78 (87)
Q Consensus        76 ~a~   78 (87)
                      +.+
T Consensus        76 ~~~   78 (356)
T TIGR00901        76 FLV   78 (356)
T ss_pred             cCC
Confidence            543

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=98.14  E-value=2.9e-06  Score=55.41  Aligned_cols=58  Identities=26%  Similarity=0.326  Sum_probs=48.0

Q ss_pred             CCccccchhHHHHHHhhHhhhhhhhhhhhhhhh-hchhHHHHHHHHHHHHHHHHHHHhc
Q psy15540         21 PFPVTESDLSFIGSSMALGAVFGSPVVGNLVDT-VGRKNTMLLLAVPTLVGWGLIIWSQ   78 (87)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~grr~~~~~~~~~~~~~~~~~~~a~   78 (87)
                      +++.++++..+..+.+.......+++.|+++|| +|||+++..+..+..++...+++++
T Consensus        51 ~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~~~~~  109 (500)
T PRK09584         51 QLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGYALVAWSG  109 (500)
T ss_pred             HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhc
Confidence            688888888888777666656666789999999 5999999999999988888887764

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=98.13  E-value=4.9e-06  Score=52.34  Aligned_cols=54  Identities=19%  Similarity=0.233  Sum_probs=48.6

Q ss_pred             CCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHH
Q psy15540         21 PFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLI   74 (87)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~   74 (87)
                      +++.++.+++.+.........+..++.|.++||+|||+..+.-+++..+.++..
T Consensus        63 ~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl~k  116 (354)
T PF05631_consen   63 SYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCLTK  116 (354)
T ss_pred             HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHH
Confidence            678899999999999999999999999999999999999999999988887643

>PRK10489 enterobactin exporter EntS; Provisional

Probab=98.12  E-value=4.2e-07  Score=57.52  Aligned_cols=61  Identities=20%  Similarity=0.074  Sum_probs=48.7

Q ss_pred             ccccccccCCCCCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHH
Q psy15540         10 PAGDRLIAGEYPFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGL   73 (87)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~   73 (87)
                      +..|.+..   +.+.++.+.+++.+...++..++.++.|+++||+|||+.+..+..+..++...
T Consensus        38 ~~~~~~~~---~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~   98 (417)
T PRK10489         38 VAVPVQIQ---MMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIG   98 (417)
T ss_pred             HHHHHHHH---HHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHH
Confidence            34455544   56678889999999999999999999999999999999888776665554443

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=98.07  E-value=2.4e-06  Score=55.68  Aligned_cols=69  Identities=19%  Similarity=0.208  Sum_probs=52.4

Q ss_pred             cccccccccCCCCCccccchhHHHHHHhhHhhhhhhhhhhhhhh----hhchhHHHHHH-HHHHHHHHHHHHHhccc
Q psy15540          9 SPAGDRLIAGEYPFPVTESDLSFIGSSMALGAVFGSPVVGNLVD----TVGRKNTMLLL-AVPTLVGWGLIIWSQSV   80 (87)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d----~~grr~~~~~~-~~~~~~~~~~~~~a~~~   80 (87)
                      .+..+.+..   +++.+..+.+.+..+..+...+.+|+.|+++|    |+|||+.++.. .....+...+.+++++.
T Consensus        24 ~~~l~~yl~---~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~~~~~~   97 (477)
T TIGR01301        24 LSLLTPYVQ---ELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIGFAADI   97 (477)
T ss_pred             HHHHHHHHH---HcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHHhCchh
Confidence            344444444   67888999999999999999999999999999    59999998875 44445555666665553

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=98.06  E-value=1.2e-05  Score=49.58  Aligned_cols=58  Identities=22%  Similarity=0.322  Sum_probs=48.5

Q ss_pred             CCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhc
Q psy15540         21 PFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQ   78 (87)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~a~   78 (87)
                      +.+.++++.+...+...++..++.+..+++.||+|||+.+..+.....++.......+
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~  291 (377)
T TIGR00890       234 SLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIP  291 (377)
T ss_pred             HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHcc
Confidence            5667777888889999999999999999999999999998888877777766655544

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=98.03  E-value=4.4e-06  Score=52.80  Aligned_cols=72  Identities=17%  Similarity=0.120  Sum_probs=54.8

Q ss_pred             ceeeeeccccccccccCCCCCccccchhHHHHHHhhHhhhhhhhhhhhhhhhh-----chhH-HHHHHHHHHHHHHHHHH
Q psy15540          2 GTILGWTSPAGDRLIAGEYPFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTV-----GRKN-TMLLLAVPTLVGWGLII   75 (87)
Q Consensus         2 g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-----grr~-~~~~~~~~~~~~~~~~~   75 (87)
                      |+.+++..+..|...+   +.+.+.++.+++..+...  .+..+++|+++||+     |||+ .+..+.....+......
T Consensus        12 ~~~~~~~~~~~~~~l~---~~g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~~~l~   86 (402)
T PRK11902         12 GLPLALTSGTLQAWMT---VEGLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASIAAMA   86 (402)
T ss_pred             hhhHHHHHHHHHHHHH---HcCCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHHHHHH
Confidence            4556677777787777   779999999999776665  57789999999999     7775 56676777766666666


Q ss_pred             Hhc
Q psy15540         76 WSQ   78 (87)
Q Consensus        76 ~a~   78 (87)
                      +.+
T Consensus        87 ~~~   89 (402)
T PRK11902         87 FCP   89 (402)
T ss_pred             hcC
Confidence            653

>PRK15011 sugar efflux transporter B; Provisional

Probab=98.00  E-value=1.5e-05  Score=50.32  Aligned_cols=61  Identities=11%  Similarity=0.294  Sum_probs=44.0

Q ss_pred             CCccccchhHHHHHHh-hHhhhhhhhhhhhhhhhhchhHHHH-HHHHHHHHHHHHHHHhccccc
Q psy15540         21 PFPVTESDLSFIGSSM-ALGAVFGSPVVGNLVDTVGRKNTML-LLAVPTLVGWGLIIWSQSVSR   82 (87)
Q Consensus        21 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~l~d~~grr~~~~-~~~~~~~~~~~~~~~a~~~~~   82 (87)
                      +++.++++.++..+.. ..+...+++..++ .||+|||+.++ .+.+...+.....+++++++.
T Consensus        45 ~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~  107 (393)
T PRK15011         45 EVHARPAMVGFFFTGSAVIGILVSQFLAGR-SDKRGDRKSLIVFCCLLGVLACTLFAWNRNYFV  107 (393)
T ss_pred             hcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HhcccchhHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence            7889999999997765 4566666766666 99999998754 445555566666677776654

>PRK03699 putative transporter; Provisional

Probab=97.98  E-value=1.7e-05  Score=50.06  Aligned_cols=60  Identities=17%  Similarity=0.121  Sum_probs=48.6

Q ss_pred             CCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhccc
Q psy15540         21 PFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSV   80 (87)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~a~~~   80 (87)
                      +++.++.+.+.+.+...++..++.+..+++.||++||+.+........+...+....++.
T Consensus       235 ~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~~~~~~  294 (394)
T PRK03699        235 KFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALVLMYLFVNTDDP  294 (394)
T ss_pred             HcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHcCCc
Confidence            568888999999999999999999999999999999998887776665555555444443

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=97.97  E-value=5.8e-06  Score=51.97  Aligned_cols=51  Identities=10%  Similarity=0.078  Sum_probs=43.6

Q ss_pred             eeccccccccccCCCCCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHH
Q psy15540          6 GWTSPAGDRLIAGEYPFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNT   59 (87)
Q Consensus         6 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~   59 (87)
                      +...|.+|.+.+   +++.+..+.++..+...+...++.++.++++||+|||..
T Consensus        21 ~~~~p~l~~~l~---~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~~~~~~   71 (382)
T TIGR00902        21 GIFLPFFPAWLK---GIGLGEEMIGLLIGAALIARFAGGLFFAPLIKDANHIII   71 (382)
T ss_pred             HHHHHHHHHHHH---HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHH
Confidence            445566677776   789999999999999999999999999999999998543

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=97.97  E-value=4.8e-06  Score=44.51  Aligned_cols=48  Identities=27%  Similarity=0.409  Sum_probs=38.6

Q ss_pred             HHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhcccc
Q psy15540         34 SSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSVS   81 (87)
Q Consensus        34 ~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~a~~~~   81 (87)
                      +...++..++.++.+++.||+|||+.+..+.....++.+.....++++
T Consensus         5 ~~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~   52 (141)
T TIGR00880         5 AGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNIT   52 (141)
T ss_pred             EeehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhccHH
Confidence            345677788899999999999999999988888887777776665543

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=97.96  E-value=6.1e-06  Score=52.73  Aligned_cols=73  Identities=18%  Similarity=0.240  Sum_probs=53.7

Q ss_pred             eeccccccccccCCCCCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhc-hhHHHHHHHHHHHHHHHHHHHhcccc
Q psy15540          6 GWTSPAGDRLIAGEYPFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVG-RKNTMLLLAVPTLVGWGLIIWSQSVS   81 (87)
Q Consensus         6 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g-rr~~~~~~~~~~~~~~~~~~~a~~~~   81 (87)
                      |...|..+...+   +.+.+.+|++.+.+...+...++++++|.++||.+ +|+.+.+..++..+........++++
T Consensus        19 G~~~p~~~~~L~---~~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~~~~~~f~   92 (400)
T PF03825_consen   19 GAFLPYLPLYLE---SRGFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLLAFSSSFW   92 (400)
T ss_pred             HHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHhccHH
Confidence            334445555555   67899999999999999999999999999999986 45666666666555555555555554

>KOG3764|consensus

Probab=97.92  E-value=2.5e-05  Score=50.17  Aligned_cols=63  Identities=21%  Similarity=0.267  Sum_probs=57.3

Q ss_pred             CCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhcccccc
Q psy15540         21 PFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSVSRH   83 (87)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~a~~~~~l   83 (87)
                      +.+..+++.+++.....+...+..++.|.+.||+|+|..++++.......++++++..++..+
T Consensus       100 ~~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~sy~~l  162 (464)
T KOG3764|consen  100 SLDRENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGNSYPML  162 (464)
T ss_pred             CccccccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcchhHHH
Confidence            445567789999999999999999999999999999999999999999999999999988754

>PRK15011 sugar efflux transporter B; Provisional

Probab=97.91  E-value=2.6e-05  Score=49.24  Aligned_cols=59  Identities=14%  Similarity=0.133  Sum_probs=43.0

Q ss_pred             CCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhcc
Q psy15540         21 PFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQS   79 (87)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~a~~   79 (87)
                      +++.++.+.+.+.+.......++.++.|+++||+|||+.+..+..............++
T Consensus       246 ~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~  304 (393)
T PRK15011        246 ELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMAHS  304 (393)
T ss_pred             HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhh
Confidence            56778888888877777777888999999999999999877665554443333333333

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=97.91  E-value=3.1e-05  Score=54.45  Aligned_cols=48  Identities=15%  Similarity=0.083  Sum_probs=39.3

Q ss_pred             chhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHH
Q psy15540         27 SDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLI   74 (87)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~   74 (87)
                      ...+++.+++.++..++.++.|+++||+|||++++.+.++..+..++.
T Consensus        47 ~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~   94 (1146)
T PRK08633         47 ILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLI   94 (1146)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHH
Confidence            446888889999999999999999999999999988776555444433

>PRK09528 lacY galactoside permease; Reviewed

Probab=97.89  E-value=3.5e-05  Score=48.99  Aligned_cols=60  Identities=12%  Similarity=0.034  Sum_probs=49.5

Q ss_pred             ccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhccccc
Q psy15540         23 PVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSVSR   82 (87)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~a~~~~~   82 (87)
                      +.+..+.+.+.++..++..++.++.+++.||+|||+.+..+..+..++..+..++++.+.
T Consensus       258 ~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~~~~~~  317 (420)
T PRK09528        258 EQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFATGPLE  317 (420)
T ss_pred             CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhcccHHH
Confidence            445566788888888888899999999999999999998888888887777777776654

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=97.87  E-value=3.6e-05  Score=48.47  Aligned_cols=59  Identities=19%  Similarity=0.342  Sum_probs=46.4

Q ss_pred             CCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhcc
Q psy15540         21 PFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQS   79 (87)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~a~~   79 (87)
                      +.+.++.+.+...+...++..++.+..+++.||+|||+.+..+.+...++.......++
T Consensus       249 ~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~  307 (406)
T PRK11551        249 GQGLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAAPS  307 (406)
T ss_pred             hCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCc
Confidence            46788888999999999999999999999999999999887766555555444444443

>KOG0253|consensus

Probab=97.86  E-value=1e-05  Score=51.81  Aligned_cols=63  Identities=24%  Similarity=0.179  Sum_probs=58.2

Q ss_pred             CCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhcccccc
Q psy15540         21 PFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSVSRH   83 (87)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~a~~~~~l   83 (87)
                      .++.++-+.+.++.....+..+++..++..+|++|||+.+........+...+.+.++|+.++
T Consensus       107 ~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~~grr~~f~~T~l~t~v~~~is~~spnf~~L  169 (528)
T KOG0253|consen  107 VWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADTIGRRKGFNLTFLVTGVFGVISGASPNFASL  169 (528)
T ss_pred             hhchhhhhhhHHHHHHHhhhhhhhhhhheehhhhhcchhhhhhHHHHHHHHHhhcCCCCeehh
Confidence            678888899999999999999999999999999999999999999999999999999988654

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=97.85  E-value=4.1e-05  Score=46.63  Aligned_cols=59  Identities=22%  Similarity=0.406  Sum_probs=51.6

Q ss_pred             CccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhH-HHHHHHHHHHHHHHHHHHhccc
Q psy15540         22 FPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKN-TMLLLAVPTLVGWGLIIWSQSV   80 (87)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~-~~~~~~~~~~~~~~~~~~a~~~   80 (87)
                      .+.++.+.+...+...++..++.++.+++.||+|||+ .+..+..+..++.......++.
T Consensus       206 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  265 (352)
T cd06174         206 LGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSL  265 (352)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccH
Confidence            4778889999999999999999999999999999999 8888888888888777766653

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PRK10133 L-fucose transporter; Provisional

Probab=97.83  E-value=7.4e-05  Score=48.14  Aligned_cols=58  Identities=7%  Similarity=-0.080  Sum_probs=48.3

Q ss_pred             CCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhc
Q psy15540         21 PFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQ   78 (87)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~a~   78 (87)
                      ..+.++.+.+.......++..++.+..+++.||+|||+++..+..+..+......+.+
T Consensus       289 ~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~  346 (438)
T PRK10133        289 IPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAG  346 (438)
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcC
Confidence            5788999999999999999999999999999999999998887766655554444433

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=97.83  E-value=1.6e-05  Score=49.93  Aligned_cols=50  Identities=12%  Similarity=0.078  Sum_probs=43.0

Q ss_pred             eeeccccccccccCCCCCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchh
Q psy15540          5 LGWTSPAGDRLIAGEYPFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRK   57 (87)
Q Consensus         5 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr   57 (87)
                      +|...|.+|.+.+   +.+.+.++.++..+...+...++.++.+++.||+|||
T Consensus        20 ~g~~~p~l~~~l~---~~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~g~~   69 (382)
T PRK11128         20 YGVFLPFWSVWLK---GQGYTPETIGLLLGAGLVARFLGSLLIAPRVKDPSQL   69 (382)
T ss_pred             HHHHhhhHHHHHH---hcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcch
Confidence            3455566666666   7899999999999999999999999999999999984

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=97.81  E-value=2.7e-05  Score=49.45  Aligned_cols=59  Identities=17%  Similarity=0.227  Sum_probs=48.1

Q ss_pred             CCccccchhHHHHHHhhHhhhhhhhhhhhhhhh----hchhH-HHHHHHHHHHHHHHHHHHhcc
Q psy15540         21 PFPVTESDLSFIGSSMALGAVFGSPVVGNLVDT----VGRKN-TMLLLAVPTLVGWGLIIWSQS   79 (87)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~----~grr~-~~~~~~~~~~~~~~~~~~a~~   79 (87)
                      ++++++.+.+.+.++..+...+..|+.|+++||    +|||+ .++.+.....++.+.....++
T Consensus        29 ~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~~~   92 (437)
T TIGR00792        29 VLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTTPD   92 (437)
T ss_pred             ccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhCCC
Confidence            689999999999999999999999999999998    67755 455676777766666665554

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=97.79  E-value=6.1e-05  Score=47.36  Aligned_cols=58  Identities=14%  Similarity=-0.042  Sum_probs=47.8

Q ss_pred             CCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhc
Q psy15540         21 PFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQ   78 (87)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~a~   78 (87)
                      +++.++.+.+...+...++..++.++.+++.||+|||+.+..+..+..++.......+
T Consensus       233 ~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~  290 (392)
T PRK10473        233 QMGFSRGEYAIIMALTAGVSMTVSFSTPFALGIFKPRTLMLTSQVLFLAAGITLALSP  290 (392)
T ss_pred             HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5677888888888888889999999999999999999999888877776666555443

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=97.77  E-value=6e-05  Score=48.68  Aligned_cols=46  Identities=17%  Similarity=0.201  Sum_probs=39.4

Q ss_pred             CCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHH
Q psy15540         21 PFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVP   66 (87)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~   66 (87)
                      +++.+..+.++..+...++..++.+..|+++||++||+.+......
T Consensus       288 ~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~  333 (467)
T PRK09556        288 ELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRALVACIAL  333 (467)
T ss_pred             ccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHH
Confidence            6788888999999989999999999999999999999876654433

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=97.77  E-value=3.6e-05  Score=50.02  Aligned_cols=48  Identities=27%  Similarity=0.423  Sum_probs=39.0

Q ss_pred             CCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHH
Q psy15540         21 PFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTL   68 (87)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~   68 (87)
                      +.+.++.+.........++..++.+..++++||+|||+.+..+.+...
T Consensus       280 ~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~  327 (490)
T PRK10642        280 NLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALF  327 (490)
T ss_pred             hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence            456777777777777888899999999999999999998887765433

>TIGR00896 CynX cyanate transporter

Probab=97.76  E-value=6.9e-05  Score=46.52  Aligned_cols=57  Identities=18%  Similarity=0.245  Sum_probs=44.1

Q ss_pred             CCccccchhHHHHHHhhHhhhhhhhhhhhhhhhh-chhHHHHHHHHHHHHHHHHHHHh
Q psy15540         21 PFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTV-GRKNTMLLLAVPTLVGWGLIIWS   77 (87)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-grr~~~~~~~~~~~~~~~~~~~a   77 (87)
                      +.+.++++.+...+...++..++++..+++.||+ +||+.+..+.....++.....+.
T Consensus       226 ~~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~  283 (355)
T TIGR00896       226 SHGASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLFA  283 (355)
T ss_pred             HcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHh
Confidence            4578888999999999999999999999999999 56666666666555555444443

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=97.74  E-value=6e-05  Score=47.45  Aligned_cols=62  Identities=11%  Similarity=0.173  Sum_probs=55.0

Q ss_pred             CCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhccccc
Q psy15540         21 PFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSVSR   82 (87)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~a~~~~~   82 (87)
                      +.+.++.+.+.+.+...++..+..+..+.+.||+|+|+.+..+.+...+.....+++++.+.
T Consensus       234 ~~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~  295 (382)
T TIGR00902       234 AAGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGAIEAFPL  295 (382)
T ss_pred             HCCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhHhhHHH
Confidence            57889999999988888888999999999999999999999999999988888888777654

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=97.73  E-value=7.9e-05  Score=47.20  Aligned_cols=55  Identities=16%  Similarity=0.037  Sum_probs=45.1

Q ss_pred             CCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHH
Q psy15540         21 PFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLII   75 (87)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~   75 (87)
                      +.+.+..+.++......++..++.++.+++.||+|||+.+..+..+..++.....
T Consensus       313 ~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~  367 (481)
T TIGR00879       313 NAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLG  367 (481)
T ss_pred             HcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence            5677777788888888888999999999999999999998888776666555544

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>PRK03893 putative sialic acid transporter; Provisional

Probab=97.73  E-value=9.9e-05  Score=47.68  Aligned_cols=52  Identities=15%  Similarity=0.063  Sum_probs=44.3

Q ss_pred             CCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHH
Q psy15540         21 PFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWG   72 (87)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~   72 (87)
                      +.+.++.+.+++.+...++..++.++.++++||+|||+.+..+..+..+..+
T Consensus       305 ~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~  356 (496)
T PRK03893        305 DLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLII  356 (496)
T ss_pred             hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence            6788889999999999999999999999999999999988877665554443

>TIGR00891 2A0112 putative sialic acid transporter

Probab=97.72  E-value=4.4e-05  Score=47.64  Aligned_cols=47  Identities=21%  Similarity=0.286  Sum_probs=41.4

Q ss_pred             CCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHH
Q psy15540         21 PFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPT   67 (87)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~   67 (87)
                      +.+.++.+.+++.+...++..++.+..+++.||+|||+.+..+....
T Consensus       268 ~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~  314 (405)
T TIGR00891       268 DLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAG  314 (405)
T ss_pred             HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhhHHHHHHH
Confidence            56788889999999999999999999999999999999888776654

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=97.71  E-value=9.7e-05  Score=50.70  Aligned_cols=51  Identities=20%  Similarity=0.207  Sum_probs=42.2

Q ss_pred             HHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhccc
Q psy15540         30 SFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSV   80 (87)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~a~~~   80 (87)
                      .....+..++..++.++.++++||+|||+++..+.++..++.++.+++++.
T Consensus       598 ~~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~~s~  648 (742)
T TIGR01299       598 YFVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFGNSE  648 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHccH
Confidence            445566778889999999999999999999999988888887777766543

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>PRK03633 putative MFS family transporter protein; Provisional

Probab=97.70  E-value=3e-05  Score=48.67  Aligned_cols=57  Identities=14%  Similarity=0.241  Sum_probs=45.0

Q ss_pred             ccccccCCCCCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHH
Q psy15540         12 GDRLIAGEYPFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGW   71 (87)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~   71 (87)
                      +|.+.+   +.+.++++.+...+...++..++.+..+++.||+|||+.+..+.....++.
T Consensus       223 lp~~~~---~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~  279 (381)
T PRK03633        223 MPLYLN---HQGMSDASIGFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGS  279 (381)
T ss_pred             HHHHHH---HcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHH
Confidence            454444   457788888888888889999999999999999999998877666555544

>TIGR01272 gluP glucose/galactose transporter

Probab=97.70  E-value=0.00021  Score=44.21  Aligned_cols=56  Identities=9%  Similarity=0.012  Sum_probs=47.3

Q ss_pred             CCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHH
Q psy15540         21 PFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIW   76 (87)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~   76 (87)
                      .++.++++.+...+.+..+..+|.+..+++.||+|+|+.+..+..+..++.++...
T Consensus       172 ~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~~l~~~  227 (310)
T TIGR01272       172 ALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLLSIGAAL  227 (310)
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHH
Confidence            46888999999999999999999999999999999999888777766665544443

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>TIGR00899 2A0120 sugar efflux transporter

Probab=97.69  E-value=8.9e-05  Score=46.02  Aligned_cols=59  Identities=15%  Similarity=0.133  Sum_probs=42.7

Q ss_pred             CCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhcc
Q psy15540         21 PFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQS   79 (87)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~a~~   79 (87)
                      +.+.++.+.+++..........+.+..+++.||+|||+.+..+.....+........++
T Consensus       229 ~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~  287 (375)
T TIGR00899       229 ELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAADNS  287 (375)
T ss_pred             HcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHH
Confidence            56778888888777766666777889999999999999888766655444433333333

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=97.69  E-value=2.6e-05  Score=49.97  Aligned_cols=58  Identities=19%  Similarity=0.239  Sum_probs=50.0

Q ss_pred             CCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhc
Q psy15540         21 PFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQ   78 (87)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~a~   78 (87)
                      +++.++.+.+.......+...+..+.+|+++||+|.+++.........+.........
T Consensus       248 ~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~~~f~~~~~~~~~l~~~~  305 (417)
T COG2223         248 QFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGRRVTLAVFVGMALAAALLSLFL  305 (417)
T ss_pred             hcCCChhhHHHHHHHHHHHHHHHHhccchhhhhccchhHHHHHHHHHHHHHHHHHccc
Confidence            7889999999999998888899999999999999999999988888777766665543

>PRK10091 MFS transport protein AraJ; Provisional

Probab=97.67  E-value=9.7e-05  Score=46.48  Aligned_cols=54  Identities=17%  Similarity=0.233  Sum_probs=45.7

Q ss_pred             CCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHH
Q psy15540         21 PFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLI   74 (87)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~   74 (87)
                      ..+.++++.+++.+...++..++.++.+++.||+|+|+.+..+..+..++.+..
T Consensus       229 ~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~~~~~~~~~~~~~i~~~~~  282 (382)
T PRK10091        229 ISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRYSPLRIAAVTDFIIVLALLML  282 (382)
T ss_pred             hcCCCHHHHHHHHHHHHHHHHHHhHHHheeccccCchhHHHHHHHHHHHHHHHH
Confidence            468888999999999999999999999999999999998887776666555443

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=97.67  E-value=9.1e-05  Score=45.88  Aligned_cols=55  Identities=18%  Similarity=0.267  Sum_probs=43.3

Q ss_pred             CCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHH
Q psy15540         21 PFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLII   75 (87)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~   75 (87)
                      .++.++.+.+.+.+...+...++.++.++++||+|||+.+..+......+.....
T Consensus       255 ~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~  309 (366)
T TIGR00886       255 QFGLSKVTAGAYASLGGLLGSLARPLGGAISDRLGGARKLLMSFLGVAMGAFLVV  309 (366)
T ss_pred             HcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhhccchhHHHHHHHHHHHHHHHH
Confidence            5677888888888888888899999999999999998877766655554444333

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=97.67  E-value=0.00013  Score=46.94  Aligned_cols=56  Identities=13%  Similarity=-0.023  Sum_probs=43.9

Q ss_pred             CCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHH
Q psy15540         21 PFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIW   76 (87)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~   76 (87)
                      +.+.+.....+......+...++.++.+++.||+|||+.++.+.++..++.+....
T Consensus       300 ~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~  355 (479)
T PRK10077        300 TLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGT  355 (479)
T ss_pred             HcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHH
Confidence            45666666666666677788889999999999999999999888887776665543

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=97.66  E-value=0.00012  Score=46.27  Aligned_cols=54  Identities=19%  Similarity=0.243  Sum_probs=45.5

Q ss_pred             CCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHH
Q psy15540         21 PFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLI   74 (87)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~   74 (87)
                      +.+.++++.+...+...++..++.+..+++.||++||+.+..+..+..++....
T Consensus       234 ~~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~  287 (393)
T PRK09705        234 EIGASAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGF  287 (393)
T ss_pred             HcCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHH
Confidence            457888889999999999999999999999999999998888776666555443

>PRK15075 citrate-proton symporter; Provisional

Probab=97.65  E-value=0.00011  Score=46.96  Aligned_cols=46  Identities=17%  Similarity=0.367  Sum_probs=38.6

Q ss_pred             CCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHH
Q psy15540         21 PFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVP   66 (87)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~   66 (87)
                      ..+.++.+.++......++..++.+..|+++||+|||+.+..+...
T Consensus       268 ~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~  313 (434)
T PRK15075        268 VLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVL  313 (434)
T ss_pred             hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence            4677888888888888888899999999999999999987765443

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=97.64  E-value=0.00017  Score=44.81  Aligned_cols=55  Identities=16%  Similarity=0.181  Sum_probs=45.6

Q ss_pred             CCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHH
Q psy15540         21 PFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLII   75 (87)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~   75 (87)
                      +.+.++.+.+.+.+...++..++.++.+++.||+|||+.+..+..+..++..+..
T Consensus       236 ~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~  290 (385)
T TIGR00710       236 IMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKWGAKSLLRMGLILFAVSAVLLE  290 (385)
T ss_pred             HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHH
Confidence            5677888899999989999999999999999999999988877766665554444

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>KOG0569|consensus

Probab=97.64  E-value=0.00019  Score=47.11  Aligned_cols=57  Identities=16%  Similarity=0.211  Sum_probs=49.6

Q ss_pred             CCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHh
Q psy15540         21 PFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWS   77 (87)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~a   77 (87)
                      +-++++++..+.+........+..+.+..+.||.|||+.++.+..+..+..+++..+
T Consensus       299 ~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~~~~~~~~~~~~~  355 (485)
T KOG0569|consen  299 TAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISLSLMAVALLLMSIA  355 (485)
T ss_pred             HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHH
Confidence            457888889999999999999999999999999999999999998888777766543

>PRK12307 putative sialic acid transporter; Provisional

Probab=97.61  E-value=0.00018  Score=45.62  Aligned_cols=52  Identities=21%  Similarity=0.163  Sum_probs=42.4

Q ss_pred             CCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHH
Q psy15540         21 PFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWG   72 (87)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~   72 (87)
                      +.+.++.+.+...+...++..++.++.+++.||+|||+.+..+.++..+...
T Consensus       260 ~~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~  311 (426)
T PRK12307        260 GEGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMSFLFIF  311 (426)
T ss_pred             HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence            4567777888888888899999999999999999999988877766554443

>TIGR00883 2A0106 metabolite-proton symporter

Probab=97.60  E-value=0.00022  Score=44.24  Aligned_cols=47  Identities=15%  Similarity=0.299  Sum_probs=39.5

Q ss_pred             CCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHH
Q psy15540         21 PFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPT   67 (87)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~   67 (87)
                      +.+.++++.+.......++..++.++.++++||+|||+.+.....+.
T Consensus       249 ~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~  295 (394)
T TIGR00883       249 TLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLA  295 (394)
T ss_pred             hcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHH
Confidence            56778888888888888999999999999999999999877554443

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=97.60  E-value=0.00017  Score=46.38  Aligned_cols=55  Identities=15%  Similarity=0.196  Sum_probs=47.1

Q ss_pred             CCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHH
Q psy15540         21 PFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLII   75 (87)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~   75 (87)
                      ..+.++.+.++......++..++.++.+++.||+|||+.+..+..+..++..+..
T Consensus       285 ~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~g~~~~~~~~~~~~  339 (485)
T TIGR00711       285 VLGYTALQAGLHILPVGLAPMLSSPIAGRMGDKIDPRKLVTIGLILYAVGFYWRA  339 (485)
T ss_pred             hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHh
Confidence            4677888899998888899999999999999999999998888877777666554

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>TIGR00901 2A0125 AmpG-related permease

Probab=97.59  E-value=0.00015  Score=45.01  Aligned_cols=55  Identities=13%  Similarity=0.308  Sum_probs=43.1

Q ss_pred             CCccccchhHHHHHHhh-HhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHH
Q psy15540         21 PFPVTESDLSFIGSSMA-LGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLII   75 (87)
Q Consensus        21 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~   75 (87)
                      +.+.++++.+....... ++..++.++.+++.||+|||+.+..+.++..+......
T Consensus       238 ~~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~  293 (356)
T TIGR00901       238 DMGFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNILYALLLFGIVQALTNAGFV  293 (356)
T ss_pred             HcCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence            46778888887777655 67788999999999999999988887777666555444

>KOG3762|consensus

Probab=97.58  E-value=7.3e-05  Score=49.64  Aligned_cols=49  Identities=16%  Similarity=0.280  Sum_probs=43.4

Q ss_pred             CCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHH
Q psy15540         21 PFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLV   69 (87)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~   69 (87)
                      ++|+++.+.+.+..+-.+..+++.|++|+++||+.+|+-++.+..+..+
T Consensus        40 QLGl~p~~~Gtl~g~~P~v~~L~~P~~g~~Adr~r~~r~lllgsl~~~v   88 (618)
T KOG3762|consen   40 QLGLNPAVVGTLTGTLPLVEFLAAPLWGFLADRYRKRRPLLLGSLLLSV   88 (618)
T ss_pred             HcCCCHHHhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCchhHHHHHHHH
Confidence            8899999999999999999999999999999999999887776655543

>PRK03545 putative arabinose transporter; Provisional

Probab=97.55  E-value=0.00026  Score=44.62  Aligned_cols=43  Identities=9%  Similarity=0.057  Sum_probs=36.3

Q ss_pred             CCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHH
Q psy15540         21 PFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLL   63 (87)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~   63 (87)
                      +.+.++.+.+++.+...++..++.++.+++.||++||+.....
T Consensus       235 ~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~  277 (390)
T PRK03545        235 VAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRHPSGFLLIAI  277 (390)
T ss_pred             hcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence            4677888899998888899999999999999999988754433

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=97.55  E-value=0.00028  Score=44.41  Aligned_cols=62  Identities=18%  Similarity=0.241  Sum_probs=50.8

Q ss_pred             CCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhccccc
Q psy15540         21 PFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSVSR   82 (87)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~a~~~~~   82 (87)
                      +.+.++.+.+.+.+...++..+..+..+++.||+|+|+.+..+.....+..+....+++.+.
T Consensus       234 ~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  295 (382)
T PRK11128        234 AAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGSTTALPW  295 (382)
T ss_pred             HCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence            56778888888888888888888899999999999999988888887777766666666543

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=97.54  E-value=0.00024  Score=44.31  Aligned_cols=48  Identities=10%  Similarity=-0.003  Sum_probs=41.2

Q ss_pred             CCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHH
Q psy15540         21 PFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTL   68 (87)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~   68 (87)
                      +.+.++.+.+.......++..++.++.+++.||+|||+.+..+.....
T Consensus       224 ~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~  271 (377)
T PRK11102        224 LNGVSPQNFGYYFALNIVFLFVMTIINSRFVRRVGALNMLRFGLWIQF  271 (377)
T ss_pred             HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence            457788889999999999999999999999999999998887765433

>PRK09952 shikimate transporter; Provisional

Probab=97.51  E-value=0.00037  Score=44.82  Aligned_cols=49  Identities=16%  Similarity=0.139  Sum_probs=35.0

Q ss_pred             CCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHH
Q psy15540         21 PFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLV   69 (87)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~   69 (87)
                      +.+.+++..........+...++.+..|+++||+|||+.+..+.++..+
T Consensus       280 ~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~  328 (438)
T PRK09952        280 NLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTL  328 (438)
T ss_pred             hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence            4566665554455555566677888999999999999988877655444

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=97.50  E-value=0.00032  Score=44.92  Aligned_cols=47  Identities=21%  Similarity=0.289  Sum_probs=37.5

Q ss_pred             CCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHH
Q psy15540         21 PFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPT   67 (87)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~   67 (87)
                      +.+.+..+.+...+...+...++.++.|+++||+|||+.+....++.
T Consensus       273 ~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~  319 (432)
T PRK10406        273 TAGMHANVASGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLA  319 (432)
T ss_pred             hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHH
Confidence            46777778888888777777888889999999999999877665543

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=97.46  E-value=8.3e-05  Score=46.81  Aligned_cols=60  Identities=18%  Similarity=0.173  Sum_probs=45.7

Q ss_pred             ceeeeeccccccccccCCCCCccccchhHHHH--HHhhHhhhhhhhhh-hhhhhhhchhHHHHHHH
Q psy15540          2 GTILGWTSPAGDRLIAGEYPFPVTESDLSFIG--SSMALGAVFGSPVV-GNLVDTVGRKNTMLLLA   64 (87)
Q Consensus         2 g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~-g~l~d~~grr~~~~~~~   64 (87)
                      |+.++...|.+|...+   +.+.+.++.+.+.  .+......+..|+. ++..||+|||+..++..
T Consensus        14 g~~~~~~~p~lp~~l~---~~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~~~i~~~   76 (390)
T TIGR02718        14 GIPIGLAMDALPTLLR---EDGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRLGRRRSWVLPM   76 (390)
T ss_pred             HhHHHHHHHHHHHHHH---HcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCcchhHHHHH
Confidence            4556667778888888   7899999999974  55677777777777 55799999999865554

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>TIGR00895 2A0115 benzoate transport

Probab=97.45  E-value=0.00034  Score=43.47  Aligned_cols=43  Identities=33%  Similarity=0.414  Sum_probs=36.5

Q ss_pred             CCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHH
Q psy15540         21 PFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLL   63 (87)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~   63 (87)
                      +.+.++.+.+...+...++..++.++.+++.||+|||+.....
T Consensus       279 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  321 (398)
T TIGR00895       279 ELGFSLSLAATGGALFNFGGVIGSIIFGWLADRLGPRVTALLL  321 (398)
T ss_pred             HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHH
Confidence            5677888889999999999999999999999999999554433

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=97.44  E-value=0.00031  Score=45.04  Aligned_cols=58  Identities=12%  Similarity=0.217  Sum_probs=48.6

Q ss_pred             CCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhcc
Q psy15540         21 PFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQS   79 (87)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~a~~   79 (87)
                      ..+++++..++....+.++..+|....|++.|| +.|+.+.....+..+......+..+
T Consensus       241 v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~~l~~~~~l~a~~~l~l~~~~~  298 (394)
T COG2814         241 VAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR-GPRRALIAALLLLALALLALTFTGA  298 (394)
T ss_pred             ccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc-cchhHHHHHHHHHHHHHHHHHHhcc
Confidence            678899999999999999999999999999999 8888888877776666655555444

>TIGR00897 2A0118 polyol permease family

Probab=97.44  E-value=0.00033  Score=44.43  Aligned_cols=41  Identities=17%  Similarity=0.174  Sum_probs=35.8

Q ss_pred             CCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHH
Q psy15540         21 PFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTML   61 (87)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~   61 (87)
                      +.+.++.+.+...+...++..++.+..|+++||+|||+.+.
T Consensus       251 ~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~  291 (402)
T TIGR00897       251 ELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVR  291 (402)
T ss_pred             HcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHH
Confidence            56788888888888888999999999999999999988654

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>TIGR00900 2A0121 H+ Antiporter protein

Probab=97.43  E-value=0.00032  Score=43.10  Aligned_cols=57  Identities=14%  Similarity=0.131  Sum_probs=47.2

Q ss_pred             CccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhc
Q psy15540         22 FPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQ   78 (87)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~a~   78 (87)
                      ++.++.+.+.......++..++.+..+++.||++||+.+..+.....+......+.+
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (365)
T TIGR00900       242 LGRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAILVVGLTP  298 (365)
T ss_pred             hCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhhc
Confidence            677888899999999999999999999999999999988877666666655555544

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=97.42  E-value=0.00035  Score=42.32  Aligned_cols=61  Identities=28%  Similarity=0.451  Sum_probs=52.4

Q ss_pred             cccccCCCCCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHh
Q psy15540         13 DRLIAGEYPFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWS   77 (87)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~a   77 (87)
                      |.+++   .++.+.+|...+.+...+|..+| ++.|.+.|++|+|.++.++.+....+......+
T Consensus        26 ~~Lk~---~l~~sq~~l~~l~~~~~~G~~~G-~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~   86 (250)
T PF06813_consen   26 PQLKS---RLGYSQSQLNTLSTAGDIGSYFG-ILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLA   86 (250)
T ss_pred             HHHHH---HhCCCHHHHHHHHHHHHHHhhcc-HHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHH
Confidence            44555   78999999999999999999886 777999999999999999999988887776654

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=97.42  E-value=0.0005  Score=43.41  Aligned_cols=60  Identities=10%  Similarity=0.048  Sum_probs=46.3

Q ss_pred             ccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhccccc
Q psy15540         23 PVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSVSR   82 (87)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~a~~~~~   82 (87)
                      +.+..+.+...+...+...++.+..+++.||+|||+.+..+..+..+.......+++.+.
T Consensus       250 ~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~~~~~~  309 (396)
T TIGR00882       250 QQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFATTALE  309 (396)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhcCChHH
Confidence            344456677777777888888899999999999999998888877777666666665543

>PRK11010 ampG muropeptide transporter; Validated

Probab=97.38  E-value=0.00011  Score=48.09  Aligned_cols=67  Identities=15%  Similarity=0.110  Sum_probs=43.5

Q ss_pred             eeccccccccccCCCCCccccchhHHHHHHhhHhhhhhhhhhhhhhhhh-----chhHH-HHHHHHHHHHHHHHHHHh
Q psy15540          6 GWTSPAGDRLIAGEYPFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTV-----GRKNT-MLLLAVPTLVGWGLIIWS   77 (87)
Q Consensus         6 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-----grr~~-~~~~~~~~~~~~~~~~~a   77 (87)
                      +...+..|...+   +.+.+.++.+.+... ... ....+++++++||+     |||+. +..+.+...++....++.
T Consensus        29 ~~~~~~l~~~l~---~~g~~~~~ig~~~~~-~~~-~~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i~~~~~~~~~a~~  101 (491)
T PRK11010         29 ALTSGTLQAWMT---VENIDLKTIGFFSLV-GQA-YVFKFLWSPLMDRYTPPFLGRRRGWLLATQLLLLVAIAAMGFL  101 (491)
T ss_pred             HHHHHHHHHHHH---hCCCCHHHHHHHHHH-HHH-HHHHHHHHHHHHcccccCCCCchHHHHHHHHHHHHHHHHHHHc
Confidence            334444555555   567777788876332 222 25789999999999     99986 446666666666666554

>PRK11010 ampG muropeptide transporter; Validated

Probab=97.36  E-value=0.00054  Score=44.85  Aligned_cols=49  Identities=10%  Similarity=0.198  Sum_probs=39.6

Q ss_pred             CCccccchhHHHHH-HhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHH
Q psy15540         21 PFPVTESDLSFIGS-SMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLV   69 (87)
Q Consensus        21 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~   69 (87)
                      +.+.++++.++... ...++..++.++.|+++||+|||+.+..+..+..+
T Consensus       252 ~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l  301 (491)
T PRK11010        252 GVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGV  301 (491)
T ss_pred             hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence            57889999999874 56688999999999999999998877765554443

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=97.36  E-value=0.0003  Score=46.22  Aligned_cols=74  Identities=18%  Similarity=0.093  Sum_probs=55.4

Q ss_pred             eeeccccccccccC-CCCCccccchhHHHHHHhhHhhhhhhhhhhhhhhh-hchhHHHHHHHHHHHHHHHHHHHhc
Q psy15540          5 LGWTSPAGDRLIAG-EYPFPVTESDLSFIGSSMALGAVFGSPVVGNLVDT-VGRKNTMLLLAVPTLVGWGLIIWSQ   78 (87)
Q Consensus         5 ~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~grr~~~~~~~~~~~~~~~~~~~a~   78 (87)
                      ||......-++... .+.++.++++..-+.+.+..-....+.++|+++|| +|+|+++..+.++..++-+..+..+
T Consensus        38 YGmraiL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGail~~iGh~~L~~~~  113 (498)
T COG3104          38 YGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISS  113 (498)
T ss_pred             hhhHHHHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccc
Confidence            34444444444442 11255888888888888887778889999999999 5999999999999999888877663

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=97.35  E-value=0.00064  Score=43.02  Aligned_cols=56  Identities=9%  Similarity=0.078  Sum_probs=43.8

Q ss_pred             CCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHH
Q psy15540         21 PFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIW   76 (87)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~   76 (87)
                      +++.++.+.++.......+..++.+..+++.||++||+.+..+.+...++......
T Consensus       245 ~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~  300 (406)
T PRK15402        245 GEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRRPLRSLIRMGLWPMVAGLLLAAL  300 (406)
T ss_pred             HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH
Confidence            46777888887777777788889999999999999999888877766555554443

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=97.35  E-value=0.00044  Score=44.07  Aligned_cols=66  Identities=14%  Similarity=0.127  Sum_probs=58.4

Q ss_pred             cccccccccCCCCCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHh
Q psy15540          9 SPAGDRLIAGEYPFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWS   77 (87)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~a   77 (87)
                      .|.++.++.   +.+.+.+..+.++++..+......++..++++|+|.++.+..+.++..++..+-...
T Consensus        32 gPLL~~Ir~---~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli~~G~~iR~~~   97 (395)
T COG2807          32 GPLLDEIRQ---DLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLIAAGILIRSLG   97 (395)
T ss_pred             hhhHHHHHH---HhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHhcc
Confidence            345556666   899999999999999999999999999999999999999999999999988877654

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=97.34  E-value=0.00045  Score=49.03  Aligned_cols=36  Identities=17%  Similarity=0.247  Sum_probs=30.4

Q ss_pred             chhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHH
Q psy15540         27 SDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLL   62 (87)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~   62 (87)
                      ...++..+.+.+...+..++.|+++||+|||+++..
T Consensus        52 ~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~   87 (1140)
T PRK06814         52 ALVTLAGAVFILPFFIFSALAGQLADKYDKAKLAKI   87 (1140)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHH
Confidence            346777778889999999999999999999997643

>TIGR00889 2A0110 nucleoside transporter

Probab=97.33  E-value=0.00085  Score=43.02  Aligned_cols=51  Identities=20%  Similarity=0.230  Sum_probs=42.4

Q ss_pred             cchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHH
Q psy15540         26 ESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIW   76 (87)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~   76 (87)
                      ..+.+...+...+...++.++.++++||+|||+++..+.+...++......
T Consensus       250 ~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~  300 (418)
T TIGR00889       250 VKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAY  300 (418)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHH
Confidence            356688888888888888999999999999999999998888777655554

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=97.33  E-value=0.00066  Score=44.34  Aligned_cols=55  Identities=11%  Similarity=0.120  Sum_probs=46.0

Q ss_pred             CCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHH
Q psy15540         21 PFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLII   75 (87)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~   75 (87)
                      ..+.++.+.+.......++..++.++.|++.||+|||+.+..+.++..++.....
T Consensus       289 v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~g~~~~~~~~~~l~  343 (495)
T PRK14995        289 VHGLSPLEAGMFMLPVMVASGFSGPIAGILVSRLGLRLVATGGMALSALSFYGLA  343 (495)
T ss_pred             HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHH
Confidence            4678888999998888899999999999999999999988877777766655443

>PF13347 MFS_2: MFS/sugar transport protein

Probab=97.30  E-value=0.00015  Score=46.41  Aligned_cols=52  Identities=19%  Similarity=0.358  Sum_probs=45.8

Q ss_pred             chhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhc
Q psy15540         27 SDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQ   78 (87)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~a~   78 (87)
                      +..+.+.....++..++.+++++++||+|||+++..+..+..++.++..+.+
T Consensus       260 ~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~  311 (428)
T PF13347_consen  260 GLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLFFLG  311 (428)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHHHHH
Confidence            5667777788889999999999999999999999999999998888877765

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=97.26  E-value=0.00062  Score=44.32  Aligned_cols=37  Identities=27%  Similarity=0.421  Sum_probs=33.8

Q ss_pred             CCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchh
Q psy15540         21 PFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRK   57 (87)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr   57 (87)
                      +.+.++.+.+.+.++..++..++.++.|+++||++||
T Consensus       282 ~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r  318 (476)
T PLN00028        282 RFGLSLETAGAIAASFGLMNLFARPAGGYLSDVAARR  318 (476)
T ss_pred             hcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHh
Confidence            5688888899999999999999999999999999976

>PRK10504 putative transporter; Provisional

Probab=97.23  E-value=0.0011  Score=42.71  Aligned_cols=56  Identities=13%  Similarity=0.130  Sum_probs=44.7

Q ss_pred             CCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHH
Q psy15540         21 PFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIW   76 (87)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~   76 (87)
                      ..+.++.+.++......++...+.++.+++.||+|||+.+..+.....+...+..+
T Consensus       291 ~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~  346 (471)
T PRK10504        291 GLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRFGYRRVLVATTLGLALVSLLFML  346 (471)
T ss_pred             HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHh
Confidence            35777788888888788888888899999999999999988887777666555544

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=97.23  E-value=0.0013  Score=41.82  Aligned_cols=53  Identities=19%  Similarity=0.317  Sum_probs=42.0

Q ss_pred             ccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHh
Q psy15540         25 TESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWS   77 (87)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~a   77 (87)
                      ++.+.+++.+...++..++.++.++++||+|||+.+..+..+..++.....+.
T Consensus       255 ~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~  307 (437)
T TIGR00792       255 DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFA  307 (437)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHc
Confidence            34566777777888899999999999999999999988877776666555443

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>PRK10489 enterobactin exporter EntS; Provisional

Probab=97.20  E-value=0.00062  Score=43.27  Aligned_cols=60  Identities=18%  Similarity=0.271  Sum_probs=47.6

Q ss_pred             CCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhccc
Q psy15540         21 PFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSV   80 (87)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~a~~~   80 (87)
                      ..+.++.+.+++.+...++..++.++.+++.||.++|+.+..+.....++.+...+.++.
T Consensus       253 ~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  312 (417)
T PRK10489        253 VWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLMPMW  312 (417)
T ss_pred             ccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHccchH
Confidence            367888889999999999999999999999999888877777776666666555555543

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=97.11  E-value=0.0017  Score=40.92  Aligned_cols=53  Identities=15%  Similarity=0.214  Sum_probs=40.4

Q ss_pred             hhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhccc
Q psy15540         28 DLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSV   80 (87)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~a~~~   80 (87)
                      +.++..+...++..++.+..+++.||+|||+.+..+.....++.......++.
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (399)
T PRK05122        250 GAALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLAPSP  302 (399)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccH
Confidence            34555666777888889999999999999998888777777666666655554

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=97.10  E-value=0.002  Score=42.28  Aligned_cols=38  Identities=13%  Similarity=0.043  Sum_probs=30.4

Q ss_pred             HhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHH
Q psy15540         35 SMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWG   72 (87)
Q Consensus        35 ~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~   72 (87)
                      +..+...+..++.|+++||+|+|+++..+.+...+...
T Consensus       294 l~~l~~~l~rplgG~LADRiG~~~vl~~~~i~~~i~~~  331 (462)
T PRK15034        294 FGPFIGAIARSVGGAISDKFGGVRVTLINFIFMAIFSA  331 (462)
T ss_pred             HHHHHHHHHHHhhHHHHHhcCchHHHHHHHHHHHHHHH
Confidence            34566777889999999999999999988876665543

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=97.09  E-value=0.0014  Score=41.20  Aligned_cols=51  Identities=18%  Similarity=0.303  Sum_probs=37.8

Q ss_pred             HHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhccc
Q psy15540         30 SFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSV   80 (87)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~a~~~   80 (87)
                      +.+.+...++..++.+..+++.||+|||+.+..+.....++.+.....++.
T Consensus       261 g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~  311 (408)
T PRK09874        261 GMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFVQTP  311 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHhccH
Confidence            444555667777888889999999999999888877766666555554443

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=97.09  E-value=0.0011  Score=43.34  Aligned_cols=40  Identities=30%  Similarity=0.164  Sum_probs=29.1

Q ss_pred             hhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHH
Q psy15540         36 MALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLII   75 (87)
Q Consensus        36 ~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~   75 (87)
                      ..++..++.+.++++.||+|||+.++.+..+..+......
T Consensus       344 ~~~~~i~g~~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~  383 (502)
T TIGR00887       344 ALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVLG  383 (502)
T ss_pred             HHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHH
Confidence            3445666788899999999999998877766555443333

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>PRK09669 putative symporter YagG; Provisional

Probab=97.08  E-value=0.00085  Score=43.14  Aligned_cols=58  Identities=21%  Similarity=0.281  Sum_probs=45.1

Q ss_pred             CCccccchhHHHHHHhhHhhhhhhhhhhhhhhh----hchhHH-HHHHHHHHHHHHHHHHHhc
Q psy15540         21 PFPVTESDLSFIGSSMALGAVFGSPVVGNLVDT----VGRKNT-MLLLAVPTLVGWGLIIWSQ   78 (87)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~----~grr~~-~~~~~~~~~~~~~~~~~a~   78 (87)
                      ++++++.+.+.+..+..+.-.+..|+.|+++||    +|||+. ++.+.+...+...+....+
T Consensus        39 ~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~p  101 (444)
T PRK09669         39 VFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYTP  101 (444)
T ss_pred             hcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhCC
Confidence            679999999999999999999999999999999    777544 4456566655554444444

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=97.08  E-value=0.0019  Score=42.99  Aligned_cols=53  Identities=15%  Similarity=0.185  Sum_probs=41.5

Q ss_pred             CccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHH
Q psy15540         22 FPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLI   74 (87)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~   74 (87)
                      ..-++...+++.....+-..+..++.|.++||++||++++.+-.+..+.....
T Consensus        40 lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~drrrili~~~~~~~~~~~~L   92 (524)
T PF05977_consen   40 LTGSPLMVALVQAASTLPILLLSLFAGALADRFDRRRILILSQLLRALVALLL   92 (524)
T ss_pred             HhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHH
Confidence            34456677888888888888889999999999999999998777665444333

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=97.06  E-value=0.00014  Score=48.35  Aligned_cols=71  Identities=17%  Similarity=0.137  Sum_probs=0.0

Q ss_pred             eeeeeccccccccccCCCCCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHH
Q psy15540          3 TILGWTSPAGDRLIAGEYPFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIW   76 (87)
Q Consensus         3 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~   76 (87)
                      ...||....+.++++   .+++++++.+++.+.+-++..+..++..++.+|.+|.+.+-.+.++.+++.+++++
T Consensus        17 ~~~g~~~~~lttiEr---RF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~l   87 (539)
T PF03137_consen   17 MVSGYVNSSLTTIER---RFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFAL   87 (539)
T ss_dssp             --------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHH---hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHhc
Confidence            456778888888887   89999999999999999999999999999999998888888899999999888774

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=97.05  E-value=0.0017  Score=40.94  Aligned_cols=47  Identities=15%  Similarity=0.010  Sum_probs=38.7

Q ss_pred             CCccccchhHHHHHHhh-HhhhhhhhhhhhhhhhhchhHHHHHHHHHH
Q psy15540         21 PFPVTESDLSFIGSSMA-LGAVFGSPVVGNLVDTVGRKNTMLLLAVPT   67 (87)
Q Consensus        21 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~l~d~~grr~~~~~~~~~~   67 (87)
                      |.+.++++.++...... .+..++.+..+++.||+|+|+.+..+....
T Consensus       237 ~~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~  284 (390)
T TIGR02718       237 DAGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLA  284 (390)
T ss_pred             hcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            56889999999888765 466778899999999999999888766554

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=96.93  E-value=0.0015  Score=42.36  Aligned_cols=55  Identities=20%  Similarity=0.334  Sum_probs=48.5

Q ss_pred             CCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHH
Q psy15540         21 PFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLII   75 (87)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~   75 (87)
                      ++++++.+...+.....+.+.+|+++.|++.||+|.|+++..+.++..+..+...
T Consensus       282 ~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~  336 (438)
T COG2270         282 DLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLI  336 (438)
T ss_pred             HcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHHH
Confidence            6889999999999999999999999999999999999999988888776555443

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=96.93  E-value=0.0027  Score=40.25  Aligned_cols=50  Identities=14%  Similarity=0.306  Sum_probs=39.1

Q ss_pred             CCccccchhHHHHHHh-hHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHH
Q psy15540         21 PFPVTESDLSFIGSSM-ALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVG   70 (87)
Q Consensus        21 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~   70 (87)
                      +.+.++++.+++.... ..+..++.++.+++.||+|||+.+..+.....+.
T Consensus       239 ~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~  289 (402)
T PRK11902        239 GAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYRSLMLFGVLQAVS  289 (402)
T ss_pred             hcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence            5788888888887654 4567888999999999999998877666555444

>PRK12382 putative transporter; Provisional

Probab=96.93  E-value=0.002  Score=40.60  Aligned_cols=52  Identities=15%  Similarity=0.167  Sum_probs=39.7

Q ss_pred             hHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhccc
Q psy15540         29 LSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSV   80 (87)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~a~~~   80 (87)
                      .+.......++..++.++.+++.||+|||+.+..+..+..++.......++.
T Consensus       251 ~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~  302 (392)
T PRK12382        251 AGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLAPTA  302 (392)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHcccH
Confidence            3444555667778889999999999999999888887777776666665544

>KOG2533|consensus

Probab=96.90  E-value=0.0021  Score=42.55  Aligned_cols=65  Identities=12%  Similarity=-0.002  Sum_probs=55.4

Q ss_pred             CCCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhccccccc
Q psy15540         20 YPFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSVSRHG   84 (87)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~a~~~~~l~   84 (87)
                      ++.+....+.+.+.+++.++..++.++++.+.||+.-.+.+....+...+..++++..+|++.+.
T Consensus        74 edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~~~~s~~~~i  138 (495)
T KOG2533|consen   74 EDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLFGFLTAAVHSFPGLI  138 (495)
T ss_pred             cccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence            36778888999999999999999999999999999988888888888888777777777766543

>TIGR00788 fbt folate/biopterin transporter

Probab=96.87  E-value=0.0012  Score=43.13  Aligned_cols=46  Identities=13%  Similarity=0.132  Sum_probs=38.5

Q ss_pred             CCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhc-----hhHHHHHHHHHH
Q psy15540         21 PFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVG-----RKNTMLLLAVPT   67 (87)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g-----rr~~~~~~~~~~   67 (87)
                      ++++++++.+.+.++..+...+-.+ +|+++||++     ||+.+..+.++.
T Consensus        55 ~lg~s~~~i~~~~sl~~lpw~~K~l-~g~l~D~~~i~G~rRr~~l~~~~~l~  105 (468)
T TIGR00788        55 DLGLDGARYQRLVGLSSLGWALKPF-AGVMSDTFPLFGYTKRWYLVLSGLLG  105 (468)
T ss_pred             hcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCCCCccchHHHHHHHHHH
Confidence            6899999999999999998888655 999999997     777767766555

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>KOG0254|consensus

Probab=96.85  E-value=0.0037  Score=41.13  Aligned_cols=48  Identities=19%  Similarity=0.224  Sum_probs=38.4

Q ss_pred             HHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHh
Q psy15540         30 SFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWS   77 (87)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~a   77 (87)
                      .....+..+...++..+...+.||+|||+.++.+.....++.++.+..
T Consensus       332 ~~~~~~~~~v~~~~t~~~~~lvd~~gRr~lll~s~~~m~~~~~~~~~~  379 (513)
T KOG0254|consen  332 FLASIILGVVNFLGTLVATYLVDRFGRRKLLLFGAAGMSICLVILAVV  379 (513)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHHHHHH
Confidence            444455666677777777999999999999999999998888877754

>PRK10429 melibiose:sodium symporter; Provisional

Probab=96.84  E-value=0.0041  Score=40.51  Aligned_cols=49  Identities=10%  Similarity=0.095  Sum_probs=36.8

Q ss_pred             ccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHH
Q psy15540         25 TESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGL   73 (87)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~   73 (87)
                      +++..+.+.+...++..++.++.++++||+|||+.+..+..+..++.+.
T Consensus       264 ~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~  312 (473)
T PRK10429        264 DADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGV  312 (473)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHH
Confidence            3445566666666788888999999999999999988777665544443

>PRK09848 glucuronide transporter; Provisional

Probab=96.83  E-value=0.0044  Score=39.92  Aligned_cols=57  Identities=26%  Similarity=0.384  Sum_probs=39.9

Q ss_pred             CCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHh
Q psy15540         21 PFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWS   77 (87)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~a   77 (87)
                      .++.++....+......++..++.++.+++.||+|+|+.+..+..+..++.+...+.
T Consensus       258 ~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~  314 (448)
T PRK09848        258 VLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWV  314 (448)
T ss_pred             ecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHc
Confidence            345444433343333456677889999999999999999998888777766655543

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=96.80  E-value=0.004  Score=40.98  Aligned_cols=53  Identities=21%  Similarity=0.271  Sum_probs=44.5

Q ss_pred             CCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchh--HHHHHHHHHHHHHHHH
Q psy15540         21 PFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRK--NTMLLLAVPTLVGWGL   73 (87)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr--~~~~~~~~~~~~~~~~   73 (87)
                      +++.+..+...+.....+.+.+|++.++++.||+|.|  ++++.+..+..+..+.
T Consensus       311 ~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~~  365 (477)
T PF11700_consen  311 VLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWIIIPLY  365 (477)
T ss_pred             hcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHH
Confidence            6788999988888889999999999999999999999  7877777666444433

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=96.80  E-value=0.0019  Score=41.84  Aligned_cols=43  Identities=26%  Similarity=0.378  Sum_probs=35.0

Q ss_pred             CCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHH
Q psy15540         21 PFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLL   63 (87)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~   63 (87)
                      +.|++.++.+.+.+...+...+.+|+.|.+.||.|.||-++..
T Consensus        37 ~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~~   79 (412)
T PF01306_consen   37 VAGLSGTEIGIIFSAGSLFALLAQPVYGFISDKLGLKKHLLWF   79 (412)
T ss_dssp             HH---HHHHHHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHHHH
T ss_pred             ccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchhhhhHHHHHH
Confidence            3689999999999999999999999999999999977765543

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=96.78  E-value=0.0034  Score=40.16  Aligned_cols=37  Identities=8%  Similarity=0.136  Sum_probs=31.9

Q ss_pred             ccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHH
Q psy15540         23 PVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNT   59 (87)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~   59 (87)
                      +.++.+.+.......++..++.+..++++||++||+.
T Consensus       275 ~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~~~r~~  311 (412)
T TIGR02332       275 GSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRLKERKH  311 (412)
T ss_pred             CCcHHHhHHHhhHHHHHHHHHHHHHHHHhcccCccHH
Confidence            4566778888888999999999999999999997764

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=96.75  E-value=0.008  Score=38.59  Aligned_cols=54  Identities=6%  Similarity=-0.076  Sum_probs=41.0

Q ss_pred             cchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhcc
Q psy15540         26 ESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQS   79 (87)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~a~~   79 (87)
                      +...+...+....+..+|.+..+++.||.++|+.+.+......+..++....++
T Consensus       268 ~~~a~~~~~~~~~~~~vGR~~~~~l~~r~~~~~~l~i~~~~~~~~~ll~~~~~~  321 (410)
T TIGR00885       268 AGFAANYNIGAMVIFFISRFIGTWLISYLAAHKVLMAYAIIGMALCLGSIFAGG  321 (410)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            333344555566778899999999999999999988888777777766666554

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>PRK10429 melibiose:sodium symporter; Provisional

Probab=96.74  E-value=0.0027  Score=41.33  Aligned_cols=55  Identities=13%  Similarity=0.126  Sum_probs=42.8

Q ss_pred             CCccccchhHHHHHHhhHhhhhhhhhhhhhhh----hhchhH-HHHHHHHHHHHHHHHHH
Q psy15540         21 PFPVTESDLSFIGSSMALGAVFGSPVVGNLVD----TVGRKN-TMLLLAVPTLVGWGLII   75 (87)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d----~~grr~-~~~~~~~~~~~~~~~~~   75 (87)
                      ..++++...+.+..+..+--.+..|+.|.++|    |+|||+ -++.+.....++..+..
T Consensus        36 v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~~llf   95 (473)
T PRK10429         36 VVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVLFLLF   95 (473)
T ss_pred             hcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHHHHHH
Confidence            56899999999999999999999999999999    669954 44456666555544443

>TIGR00893 2A0114 d-galactonate transporter

Probab=96.73  E-value=0.0021  Score=39.69  Aligned_cols=38  Identities=18%  Similarity=0.212  Sum_probs=33.9

Q ss_pred             CCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhH
Q psy15540         21 PFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKN   58 (87)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~   58 (87)
                      +.+.++.+.++..+...++..++.++.+++.||++||+
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  282 (399)
T TIGR00893       245 ERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRG  282 (399)
T ss_pred             HhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            45777888899999999999999999999999999995

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=96.71  E-value=0.0018  Score=45.89  Aligned_cols=59  Identities=17%  Similarity=0.154  Sum_probs=47.9

Q ss_pred             CCccccc-hhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhcc
Q psy15540         21 PFPVTES-DLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQS   79 (87)
Q Consensus        21 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~a~~   79 (87)
                      .++.+.. +.+++.+...++..++.++.+++.||+++|+.+.++.++..++.+...+..+
T Consensus       262 ~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (1146)
T PRK08633        262 VLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTAPS  321 (1146)
T ss_pred             HhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHhhh
Confidence            5677888 8899999999999999999999999999998887777766666655555444

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=96.71  E-value=0.0044  Score=39.42  Aligned_cols=41  Identities=7%  Similarity=0.048  Sum_probs=33.7

Q ss_pred             CCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHH
Q psy15540         21 PFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTML   61 (87)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~   61 (87)
                      +.+.++++.+.......++..++.++.+++.||.+||....
T Consensus       246 ~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~~~~~l~~  286 (394)
T PRK10213        246 LAGFGVDGLTLVLLSFGIASFVGTSLSSFILKRSVKLALAG  286 (394)
T ss_pred             hcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHH
Confidence            56888888999888899999999999999999965554333

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=96.67  E-value=0.0036  Score=36.81  Aligned_cols=53  Identities=25%  Similarity=0.325  Sum_probs=40.6

Q ss_pred             chhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhcc
Q psy15540         27 SDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQS   79 (87)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~a~~   79 (87)
                      ...++..+...++...+.++.|.+.||+|||+.+..+......+.+...+..+
T Consensus        39 ~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~   91 (338)
T COG0477          39 LLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAPN   91 (338)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhCcc
Confidence            46788888888888888899999999999998777777654455455555443

>PRK11043 putative transporter; Provisional

Probab=96.65  E-value=0.0063  Score=38.46  Aligned_cols=46  Identities=11%  Similarity=0.111  Sum_probs=36.1

Q ss_pred             CCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHH
Q psy15540         21 PFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVP   66 (87)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~   66 (87)
                      +.+.++.+.++......++..++....+++.||+++|+.+......
T Consensus       232 ~~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~~~~~~~~~~~~~  277 (401)
T PRK11043        232 QMGYSPADIGLSYVPQTIAFLVGGYGCRAALQKWGGEQLLPWLLVL  277 (401)
T ss_pred             HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHH
Confidence            4677888888877777778888899999999999999866544433

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=96.61  E-value=0.0025  Score=42.39  Aligned_cols=62  Identities=16%  Similarity=0.202  Sum_probs=54.7

Q ss_pred             CCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhccccc
Q psy15540         21 PFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSVSR   82 (87)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~a~~~~~   82 (87)
                      +++.++...+++.+...+|..+|.+..+.+.+|.++++.+..+.+...+..+..+++++.+.
T Consensus       248 ~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~~~~~~  309 (524)
T PF05977_consen  248 VLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALSPSFWL  309 (524)
T ss_pred             HhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcchHHHH
Confidence            57888999999999999999999999999999999999888888888888888888776543

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=96.61  E-value=0.0075  Score=39.71  Aligned_cols=58  Identities=19%  Similarity=0.206  Sum_probs=48.3

Q ss_pred             CCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhc
Q psy15540         21 PFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQ   78 (87)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~a~   78 (87)
                      ..+.++............+..++.++...+++|+|||+++..+.++..++.....+.+
T Consensus       266 ~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~~  323 (467)
T COG2211         266 VLGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFTP  323 (467)
T ss_pred             EcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhc
Confidence            3455566666777777788888899999999999999999999999999888888776

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=96.60  E-value=0.0038  Score=39.68  Aligned_cols=44  Identities=14%  Similarity=0.187  Sum_probs=39.0

Q ss_pred             CCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHH
Q psy15540         21 PFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLA   64 (87)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~   64 (87)
                      .++.++.+.+...+...++..++.+..+++.||.++|+.+..+.
T Consensus       235 ~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~  278 (393)
T PRK11195        235 ALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLETVLRVLPAGI  278 (393)
T ss_pred             HcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHH
Confidence            56888899999999999999999999999999999988777664

>KOG0253|consensus

Probab=96.59  E-value=0.0047  Score=40.16  Aligned_cols=43  Identities=26%  Similarity=0.262  Sum_probs=36.0

Q ss_pred             hhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhc
Q psy15540         36 MALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQ   78 (87)
Q Consensus        36 ~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~a~   78 (87)
                      ..+.-..|.++.+++.||+|||++|..+.+++.+..+....+.
T Consensus       390 tslaefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~  432 (528)
T KOG0253|consen  390 TSLAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCK  432 (528)
T ss_pred             HHHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhc
Confidence            3456678899999999999999999999999988877665544

>PRK09848 glucuronide transporter; Provisional

Probab=96.55  E-value=0.0037  Score=40.24  Aligned_cols=49  Identities=18%  Similarity=0.249  Sum_probs=39.5

Q ss_pred             CCccccchhHHHHHHhhHhhhhhhhhhhhhhhhh----chhHHH-HHHHHHHHH
Q psy15540         21 PFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTV----GRKNTM-LLLAVPTLV   69 (87)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~----grr~~~-~~~~~~~~~   69 (87)
                      ..++++.+.+.+.+...+...+..++.|.++||.    |||+.. ..+.+...+
T Consensus        38 ~~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~   91 (448)
T PRK09848         38 VAGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMI   91 (448)
T ss_pred             HcCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHH
Confidence            5789999999999999999999999999999996    767655 444444433

>TIGR00898 2A0119 cation transport protein

Probab=96.47  E-value=0.011  Score=38.55  Aligned_cols=44  Identities=20%  Similarity=0.187  Sum_probs=33.9

Q ss_pred             hhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhcc
Q psy15540         36 MALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQS   79 (87)
Q Consensus        36 ~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~a~~   79 (87)
                      ..+....+.+..+++.||+|||+.+..+.++..++.+...+.++
T Consensus       364 ~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~~  407 (505)
T TIGR00898       364 SGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPV  407 (505)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCC
Confidence            34555667888899999999999999888887777666665543

>KOG2504|consensus

Probab=96.46  E-value=0.0057  Score=40.61  Aligned_cols=63  Identities=16%  Similarity=0.248  Sum_probs=51.8

Q ss_pred             CCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhc--hhHHHHHHHHHHHHHHHHHHHhcccccc
Q psy15540         21 PFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVG--RKNTMLLLAVPTLVGWGLIIWSQSVSRH   83 (87)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g--rr~~~~~~~~~~~~~~~~~~~a~~~~~l   83 (87)
                      +.+.++.+.+.+.++..+...++.+..|+++|+..  ++....++.+...+.....+++.++..+
T Consensus       327 ~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl~~~~~p~~~~~~~l  391 (509)
T KOG2504|consen  327 SLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGLARLFLPFATTYVGL  391 (509)
T ss_pred             hcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHHhccHHHH
Confidence            67889999999999999999999999999999998  4455556667777777777787777443

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=96.40  E-value=0.0047  Score=40.05  Aligned_cols=62  Identities=13%  Similarity=-0.007  Sum_probs=49.6

Q ss_pred             ccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhccccccc
Q psy15540         23 PVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSVSRHG   84 (87)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~a~~~~~l~   84 (87)
                      +.++...+.+.+...+.-...-.+.+++.+|+|.|+.++++.....+-...++++++++.+.
T Consensus       255 ~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~~~~~~i~  316 (412)
T PF01306_consen  255 GQGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFATNPWVIS  316 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT--SHHHHH
T ss_pred             ccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhhcchHHHH
Confidence            34445678888888888888888889999999999999999999999999999999877543

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=96.36  E-value=0.0063  Score=37.29  Aligned_cols=55  Identities=20%  Similarity=0.337  Sum_probs=43.2

Q ss_pred             CCccc-cchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHH
Q psy15540         21 PFPVT-ESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLII   75 (87)
Q Consensus        21 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~   75 (87)
                      +++.+ ..+.+...+...+...++.++.+++.||+++|+..........+......
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  291 (352)
T PF07690_consen  236 VLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRRRRLLIAILLLILGALGLL  291 (352)
T ss_dssp             HHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHC
T ss_pred             ccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHH
Confidence            56777 67888888989999999999999999999988777776666655554443

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>PRK11462 putative transporter; Provisional

Probab=96.20  E-value=0.022  Score=37.16  Aligned_cols=40  Identities=13%  Similarity=0.111  Sum_probs=30.1

Q ss_pred             hhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHH
Q psy15540         28 DLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPT   67 (87)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~   67 (87)
                      ..+.+.....++..++.+++++++||++||+.+..+....
T Consensus       264 ~~~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~  303 (460)
T PRK11462        264 VFVAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNALL  303 (460)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHH
Confidence            3455566677788888999999999999998876544433

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=96.18  E-value=0.012  Score=37.92  Aligned_cols=37  Identities=14%  Similarity=0.037  Sum_probs=31.6

Q ss_pred             CCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchh
Q psy15540         21 PFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRK   57 (87)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr   57 (87)
                      ..+.++.+.++......++..++.+..+++.||+++|
T Consensus       281 ~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~  317 (438)
T TIGR00712       281 VKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFKG  317 (438)
T ss_pred             ccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence            4577888888888888889999999999999999644

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>PRK09669 putative symporter YagG; Provisional

Probab=96.14  E-value=0.025  Score=36.47  Aligned_cols=42  Identities=12%  Similarity=0.182  Sum_probs=31.5

Q ss_pred             hhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHH
Q psy15540         28 DLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLV   69 (87)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~   69 (87)
                      ..+.+.....+...++.+++++++||+|||+.+..+.....+
T Consensus       265 ~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~  306 (444)
T PRK09669        265 LATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVI  306 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHH
Confidence            334455555677778889999999999999998877665544

>PRK11663 regulatory protein UhpC; Provisional

Probab=96.05  E-value=0.028  Score=36.22  Aligned_cols=34  Identities=24%  Similarity=0.204  Sum_probs=31.0

Q ss_pred             CCccccchhHHHHHHhhHhhhhhhhhhhhhhhhh
Q psy15540         21 PFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTV   54 (87)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~   54 (87)
                      +.+.+..+.+...+...++..++.+..|+++||+
T Consensus       273 ~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~  306 (434)
T PRK11663        273 TLGVDLVTANSAVSMFELGGFIGALVAGWGSDKL  306 (434)
T ss_pred             ccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHh
Confidence            5688888889999999999999999999999999

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=95.98  E-value=0.022  Score=36.81  Aligned_cols=38  Identities=16%  Similarity=0.155  Sum_probs=31.5

Q ss_pred             CCccccchhHHHHHHhhHhhhhhhhhhhhhhhhh--chhH
Q psy15540         21 PFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTV--GRKN   58 (87)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~--grr~   58 (87)
                      +.+.+.++.++......++..++.++.|+++||+  +||.
T Consensus       283 ~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~  322 (452)
T PRK11273        283 VKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRG  322 (452)
T ss_pred             hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcc
Confidence            4577778888888888888889999999999999  5554

>KOG4686|consensus

Probab=95.73  E-value=0.0094  Score=37.67  Aligned_cols=47  Identities=21%  Similarity=0.088  Sum_probs=39.1

Q ss_pred             CCCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHH
Q psy15540         20 YPFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVP   66 (87)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~   66 (87)
                      +.+++++.+.+.+.+..........++.|.++||+||+...+.+..+
T Consensus       293 ~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~  339 (459)
T KOG4686|consen  293 KRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACI  339 (459)
T ss_pred             HhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHH
Confidence            37899999999998888888888899999999999999776654433

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=95.69  E-value=0.036  Score=36.30  Aligned_cols=58  Identities=17%  Similarity=0.176  Sum_probs=41.9

Q ss_pred             CCccccchhHHHHHHhhHhhhhhhhhhhhhhhhh--chhHHHHHHH-HHHHHHHHHHHHhc
Q psy15540         21 PFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTV--GRKNTMLLLA-VPTLVGWGLIIWSQ   78 (87)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~--grr~~~~~~~-~~~~~~~~~~~~a~   78 (87)
                      ..+.+.....+..+++-+++..|++++|+++||.  |||...-+.+ +...++....-.++
T Consensus       282 ~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~~~i~~~~~~~w~~~  342 (448)
T COG2271         282 VKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFMLLITASLVLYWLAP  342 (448)
T ss_pred             hcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHcCC
Confidence            5688899999999999999999999999999997  5665444333 33333333333444

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=95.63  E-value=0.029  Score=38.49  Aligned_cols=70  Identities=16%  Similarity=0.210  Sum_probs=53.3

Q ss_pred             eeeccccccccccCCCCCccccchhHHHHHHhhHhhhhhhhhhhhhhhh-hchhHHHHHHHHHHHHHHHHHHHh
Q psy15540          5 LGWTSPAGDRLIAGEYPFPVTESDLSFIGSSMALGAVFGSPVVGNLVDT-VGRKNTMLLLAVPTLVGWGLIIWS   77 (87)
Q Consensus         5 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~grr~~~~~~~~~~~~~~~~~~~a   77 (87)
                      ||.......++..   .++.+++....+...+.....+.+.+.|+++|+ +||++++..+.++..++..+.+++
T Consensus         4 YGm~aiLvlYl~~---~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~   74 (654)
T TIGR00926         4 YGMRTILVLYFLN---FLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFG   74 (654)
T ss_pred             eecHHHHHHHHHH---HcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhc
Confidence            3444445555555   678888888888888887788889999999986 688899998888888887776654

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=95.62  E-value=0.022  Score=35.18  Aligned_cols=35  Identities=20%  Similarity=0.230  Sum_probs=30.6

Q ss_pred             CCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhc
Q psy15540         21 PFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVG   55 (87)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g   55 (87)
                      +.+.++.+.+...+...++..++.++.+++.||..
T Consensus       246 ~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~  280 (379)
T TIGR00881       246 EKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLF  280 (379)
T ss_pred             HhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHc
Confidence            56778888899999999999999999999999863

>PF13347 MFS_2: MFS/sugar transport protein

Probab=95.57  E-value=0.0046  Score=39.63  Aligned_cols=57  Identities=16%  Similarity=0.204  Sum_probs=45.9

Q ss_pred             CCccccchhHHHHHHhhHhhhhhhhhhhhhhh----hhchhHHHH-HHHHHHHHHHHHHHHh
Q psy15540         21 PFPVTESDLSFIGSSMALGAVFGSPVVGNLVD----TVGRKNTML-LLAVPTLVGWGLIIWS   77 (87)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d----~~grr~~~~-~~~~~~~~~~~~~~~a   77 (87)
                      ..++++...+.+.....+-..+..|+.|.++|    |+|||+..+ .+.....++..+....
T Consensus        31 ~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~   92 (428)
T PF13347_consen   31 VLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSP   92 (428)
T ss_pred             HcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhcc
Confidence            56899999999999988889999999999999    899887766 4666666666555544

>PRK10054 putative transporter; Provisional

Probab=95.53  E-value=0.026  Score=35.95  Aligned_cols=55  Identities=15%  Similarity=0.030  Sum_probs=38.9

Q ss_pred             CccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHH
Q psy15540         22 FPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIW   76 (87)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~   76 (87)
                      .+.++...+.......+......+..+.+.||.++|+.+..+..+..++.....+
T Consensus       239 ~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~  293 (395)
T PRK10054        239 SDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAANIRPLMTAGTLCFVIGLVGFIF  293 (395)
T ss_pred             cchHHHHHHHHHHhhhhheeeehhHHHHHHccCCchhHHHHHHHHHHHHHHHHHH
Confidence            3445555666666666665666778889999999999888887777666655554

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=95.40  E-value=0.043  Score=35.68  Aligned_cols=61  Identities=15%  Similarity=0.142  Sum_probs=40.0

Q ss_pred             CCccccchhHHHHHHhhHhhhhhhhhhhhhhhh--hchhHHHHHH--HHHHHHHHHHHHHhcccc
Q psy15540         21 PFPVTESDLSFIGSSMALGAVFGSPVVGNLVDT--VGRKNTMLLL--AVPTLVGWGLIIWSQSVS   81 (87)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~--~grr~~~~~~--~~~~~~~~~~~~~a~~~~   81 (87)
                      +.+.++.+.+...+...++..++.++.+++.||  +++|+.....  ........++....++++
T Consensus       270 ~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~  334 (455)
T TIGR00892       270 DKGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCALAGDYT  334 (455)
T ss_pred             HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHHhchHH
Confidence            467888899999999999999999999999997  3344333332  222233333444445443

>TIGR00788 fbt folate/biopterin transporter

Probab=94.92  E-value=0.1  Score=34.21  Aligned_cols=55  Identities=11%  Similarity=-0.054  Sum_probs=48.3

Q ss_pred             CCCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHH
Q psy15540         20 YPFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLI   74 (87)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~   74 (87)
                      +..+.++.+.+.......++..++....+.+.+|++.|+.+..+.++..++....
T Consensus       281 ~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~  335 (468)
T TIGR00788       281 QCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFD  335 (468)
T ss_pred             ccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCc
Confidence            3678999999999999999999999999999999999999999888887766443

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=94.61  E-value=0.047  Score=35.35  Aligned_cols=37  Identities=22%  Similarity=0.138  Sum_probs=33.0

Q ss_pred             CCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchh
Q psy15540         21 PFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRK   57 (87)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr   57 (87)
                      ..+.+..+.++..++..++..++.++.|+++||.++|
T Consensus       291 ~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~~~~  327 (465)
T TIGR00894       291 VLRVSGKENGLLSSLPYLFAWLCSIFAGYLADFLKSS  327 (465)
T ss_pred             HhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            5678888999999999999999999999999998765

>TIGR00805 oat sodium-independent organic anion transporter

Probab=94.58  E-value=0.073  Score=36.36  Aligned_cols=51  Identities=12%  Similarity=0.257  Sum_probs=38.5

Q ss_pred             CCccccchhHHHHHHhhH-hhhhhhhhhhhhhhhhc--hhHHHHHHHHHHHHHH
Q psy15540         21 PFPVTESDLSFIGSSMAL-GAVFGSPVVGNLVDTVG--RKNTMLLLAVPTLVGW   71 (87)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~l~d~~g--rr~~~~~~~~~~~~~~   71 (87)
                      +++.++.+.+++.....+ +..++.++.|+++||++  .|+.+..+.+...++.
T Consensus       360 ~~g~s~~~ag~l~~~~~i~~~~vG~~l~G~l~~r~~~~~~~~~~~~~~~~~~~~  413 (633)
T TIGR00805       360 QYGISSAEANFLIGVVNLPAAGLGYLIGGFIMKKFKLNVKKAAYFAICLSTLSY  413 (633)
T ss_pred             HcCCcHHHHHHHhhhhhhhHHHHHHhhhhheeeeecccHHHHHHHHHHHHHHHH
Confidence            678899999998887665 66889999999999998  4455555555555443

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=94.47  E-value=0.056  Score=35.22  Aligned_cols=59  Identities=12%  Similarity=0.140  Sum_probs=51.0

Q ss_pred             CccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhccc
Q psy15540         22 FPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSV   80 (87)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~a~~~   80 (87)
                      .+.++.+.+...+.+..+.++|.+...++.+|+...+.+....+...+..+...++++.
T Consensus       267 ~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~~~~k~Laf~a~~~ill~~~~~l~~g~  325 (422)
T COG0738         267 LGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRIKPEKYLAFYALIAILLLLAVALIGGV  325 (422)
T ss_pred             CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHhcCh
Confidence            67888999999999999999999999999999999999988887777767667666663

>KOG2563|consensus

Probab=94.33  E-value=0.11  Score=34.34  Aligned_cols=58  Identities=16%  Similarity=0.087  Sum_probs=50.1

Q ss_pred             CCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhcc
Q psy15540         21 PFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQS   79 (87)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~a~~   79 (87)
                      .++ +.+...|+..++.+....-.+...|+.||+|-|....++..+..++..+...+..
T Consensus        74 ~Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llgt~ln~iGa~Ir~iss~  131 (480)
T KOG2563|consen   74 FYG-SSSAADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLLGTVLNGIGAWIRLISSL  131 (480)
T ss_pred             Hhc-chHHHHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHHHHHHHHHHHHHhhhccC
Confidence            345 6777889999999888888999999999999999999999999999888776644

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=94.33  E-value=0.12  Score=33.36  Aligned_cols=59  Identities=14%  Similarity=0.130  Sum_probs=46.2

Q ss_pred             CCccccchhHHHHHHhhHhhhhhhhhhhhhhh-hhchhHHHHHHHHHHHHHHHHHHHhcc
Q psy15540         21 PFPVTESDLSFIGSSMALGAVFGSPVVGNLVD-TVGRKNTMLLLAVPTLVGWGLIIWSQS   79 (87)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d-~~grr~~~~~~~~~~~~~~~~~~~a~~   79 (87)
                      |-+.++.+.+++.+...+.....++....+++ +-++|+..........++...+.+++.
T Consensus       237 ~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~~G~~~~P~  296 (395)
T COG2807         237 DRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVGLVGLLLAPG  296 (395)
T ss_pred             HcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhh
Confidence            67899999999999999999999999999988 455666666666666666666655553

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=94.30  E-value=0.26  Score=27.91  Aligned_cols=43  Identities=12%  Similarity=0.040  Sum_probs=32.9

Q ss_pred             HHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHH
Q psy15540         32 IGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLI   74 (87)
Q Consensus        32 ~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~   74 (87)
                      -.++......+.+++.+.+.++.|.|+.++++.+...+.....
T Consensus        42 slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~   84 (156)
T PF05978_consen   42 SLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASF   84 (156)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence            3344555667778888999999999999999998887655443

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>KOG3626|consensus

Probab=94.28  E-value=0.005  Score=42.51  Aligned_cols=72  Identities=17%  Similarity=0.115  Sum_probs=63.2

Q ss_pred             eeeeeccccccccccCCCCCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHh
Q psy15540          3 TILGWTSPAGDRLIAGEYPFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWS   77 (87)
Q Consensus         3 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~a   77 (87)
                      +..+|.++.+..+++   .+++++++.+++.+.+-++..+...+..+...|..|.+.+-.+.++.+++.+++++-
T Consensus       111 l~~~y~~s~IttiEr---RF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lgsll~alP  182 (735)
T KOG3626|consen  111 LYVGYFNSVITTIER---RFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLGSLLFALP  182 (735)
T ss_pred             hhhhhhhhhhhhhhh---hcCCCCCcceeEeeecccchhhhhHhHHHhccccCccceeeechhHHHHHHHHHhCh
Confidence            344677777777777   899999999999999999999999999999999999999889999999999888743

>KOG2816|consensus

Probab=94.15  E-value=0.2  Score=33.15  Aligned_cols=42  Identities=29%  Similarity=0.428  Sum_probs=34.0

Q ss_pred             hHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhc
Q psy15540         37 ALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQ   78 (87)
Q Consensus        37 ~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~a~   78 (87)
                      .+...+.++..|.++||+|||..+........+......+..
T Consensus        72 ~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~~~~  113 (463)
T KOG2816|consen   72 GLLTLISSPLIGALSDRYGRKVVLLLPLFGTILPALCLLFQG  113 (463)
T ss_pred             HHHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHHHHHHH
Confidence            566777899999999999999999988888777666665544

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=94.02  E-value=0.19  Score=32.16  Aligned_cols=58  Identities=5%  Similarity=-0.124  Sum_probs=35.1

Q ss_pred             cccchhHHHHHHhhHhhhhhhhhhhhhh-hhhchhHHHHHHHHHHHHHHHHHHHhcccc
Q psy15540         24 VTESDLSFIGSSMALGAVFGSPVVGNLV-DTVGRKNTMLLLAVPTLVGWGLIIWSQSVS   81 (87)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~-d~~grr~~~~~~~~~~~~~~~~~~~a~~~~   81 (87)
                      .++.+.+++.+...++........+... ||++.|+.+..+..+..++......++++.
T Consensus       240 ~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~~~~  298 (400)
T PRK11646        240 GSPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMVSNLQ  298 (400)
T ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhhhHH
Confidence            3566777777766655544444445544 556666666677766666666666665543

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=93.70  E-value=0.1  Score=37.53  Aligned_cols=52  Identities=12%  Similarity=-0.055  Sum_probs=40.9

Q ss_pred             CCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHH
Q psy15540         21 PFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWG   72 (87)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~   72 (87)
                      .++.++.+.+++.+...++..++.+..+++.|+.++++.+..+.+...+..+
T Consensus       255 ~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~  306 (1140)
T PRK06814        255 TLGGDENVATLFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGLFGL  306 (1140)
T ss_pred             HcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHHHHH
Confidence            4688889999999999999999999999999888777655555544444443

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=93.61  E-value=0.0046  Score=39.63  Aligned_cols=39  Identities=15%  Similarity=0.263  Sum_probs=29.0

Q ss_pred             hhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHH
Q psy15540         36 MALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLI   74 (87)
Q Consensus        36 ~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~   74 (87)
                      ..+...++.+...++.||+|||+.++.+.....+.....
T Consensus       295 ~~~~~~~~~~~~~~~~~~~GRr~~~i~~~~~~~~~~~~~  333 (451)
T PF00083_consen  295 LGLVNFLGTLLAIFLIDRFGRRKLLIIGLLLMAICSLIL  333 (451)
T ss_pred             ccccccccccccccccccccccccccccccccccccccc
Confidence            334555667777799999999999888887766655544

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>KOG2325|consensus

Probab=93.34  E-value=0.21  Score=33.33  Aligned_cols=54  Identities=17%  Similarity=0.214  Sum_probs=46.7

Q ss_pred             CCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhch-hHHHHHHHHHHHHHHHHH
Q psy15540         21 PFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGR-KNTMLLLAVPTLVGWGLI   74 (87)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr-r~~~~~~~~~~~~~~~~~   74 (87)
                      |.+-+.+-.++..++..++..+.++..++=.+|.++ |+-++.++++..++.++-
T Consensus        65 D~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~ii~~~g~llY  119 (488)
T KOG2325|consen   65 DPTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVSFLIAIIGNLLY  119 (488)
T ss_pred             CCCCCcchhhHHHHHHHHHHHhcchhhcccccccCCcccCHHHHHHHHHHHHHHH
Confidence            356667778999999999999999999999999995 667788999988888877

>KOG4332|consensus

Probab=92.88  E-value=0.038  Score=34.82  Aligned_cols=59  Identities=15%  Similarity=0.182  Sum_probs=35.9

Q ss_pred             CCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhccc
Q psy15540         21 PFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSV   80 (87)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~a~~~   80 (87)
                      .++..+-+++.+.....-..+.-..+.|.++||-|||+..+.-++...+.++ .-.++.|
T Consensus        66 tYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDkqGRKracvtycitYiLsCi-TKhSpqY  124 (454)
T KOG4332|consen   66 TYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILSCI-TKHSPQY  124 (454)
T ss_pred             hcCccCCccceeeecccchHHHHHHHHHHHHhhhccccceeeehHHHHHHHH-hhcCCce
Confidence            4555666666555544444444455668899999999987666665555443 3334444

>KOG2533|consensus

Probab=92.50  E-value=0.27  Score=32.90  Aligned_cols=49  Identities=14%  Similarity=0.238  Sum_probs=40.0

Q ss_pred             CccccchhHHHHHHhhHhhhhhhhhhhhhhhh----hchhHHHHHHHHHHHHH
Q psy15540         22 FPVTESDLSFIGSSMALGAVFGSPVVGNLVDT----VGRKNTMLLLAVPTLVG   70 (87)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~----~grr~~~~~~~~~~~~~   70 (87)
                      .+.++.+...+.+.+.++..++.+++|+++||    ..+|........+....
T Consensus       304 ~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~~~~~~~~~~~~~~  356 (495)
T KOG2533|consen  304 GGYSELQANLLSTPYDVGGIVGLILAGYLSDRLKTIFARRLLFIVFLCLYAII  356 (495)
T ss_pred             CCcChHHhccccchHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence            46788899999999999999999999999999    77777766655555443

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=92.34  E-value=0.37  Score=32.03  Aligned_cols=49  Identities=20%  Similarity=0.325  Sum_probs=35.9

Q ss_pred             hHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHH-HHHHHHHHHh
Q psy15540         29 LSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPT-LVGWGLIIWS   77 (87)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~-~~~~~~~~~a   77 (87)
                      .+...++..+...+..|+.|.++|+-++||-++....+. .+......+.
T Consensus        72 ~~~~~sis~l~~all~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~v  121 (477)
T PF11700_consen   72 WLYANSISGLLQALLAPFLGAIADYGGRRKRFLLIFTLLGVLATALLWFV  121 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHh
Confidence            456677788888888999999999999998877655444 4455555543

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=92.19  E-value=0.18  Score=32.89  Aligned_cols=57  Identities=19%  Similarity=0.172  Sum_probs=41.1

Q ss_pred             CCccccchhHHHHHHhhHhhhhhhhhhhhhhhhh-----chhHHHHHHHHHHHHHHHHHHHhc
Q psy15540         21 PFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTV-----GRKNTMLLLAVPTLVGWGLIIWSQ   78 (87)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-----grr~~~~~~~~~~~~~~~~~~~a~   78 (87)
                      ++++++.+...+.+...+-..+ -++.|.++|.+     .||+-++++.++...+....+..+
T Consensus        19 ~l~ls~~~~~~~~~~~~lPw~~-Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~   80 (433)
T PF03092_consen   19 DLGLSPAQLQRLSSLASLPWSI-KPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLP   80 (433)
T ss_pred             HcCCCHHHHHHHHHHHhCchHH-hhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcc
Confidence            7899999999988887777555 66779999987     456656667766655555444433

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=92.00  E-value=0.77  Score=29.03  Aligned_cols=38  Identities=13%  Similarity=0.051  Sum_probs=30.2

Q ss_pred             CCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhH
Q psy15540         21 PFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKN   58 (87)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~   58 (87)
                      .++.++.+.+++.....++..++.++.+++.||++|+.
T Consensus       237 ~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~  274 (394)
T PRK11652        237 VLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLM  274 (394)
T ss_pred             HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            36777788888888888888888888899999887443

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=90.88  E-value=0.28  Score=25.70  Aligned_cols=46  Identities=28%  Similarity=0.564  Sum_probs=33.9

Q ss_pred             chhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHH
Q psy15540         27 SDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWG   72 (87)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~   72 (87)
                      ...+.......++..+++...+.+.|..|.|..+........+..+
T Consensus        87 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (141)
T TIGR00880        87 VALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFI  132 (141)
T ss_pred             HHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHH
Confidence            3456666677788888999999999999988877766655554443

>PRK11462 putative transporter; Provisional

Probab=90.45  E-value=0.76  Score=30.17  Aligned_cols=58  Identities=16%  Similarity=0.092  Sum_probs=43.7

Q ss_pred             CCccccchhHHHHHHhhHhhhhhhhhhhhhhhh----hchhHHHH-HHHHHHHHHHHHHHHhc
Q psy15540         21 PFPVTESDLSFIGSSMALGAVFGSPVVGNLVDT----VGRKNTML-LLAVPTLVGWGLIIWSQ   78 (87)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~----~grr~~~~-~~~~~~~~~~~~~~~a~   78 (87)
                      ..++++...+.+..+.-+--.+.-|+.|.++||    +|||+..+ .+.+...+...+....+
T Consensus        39 ~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~p  101 (460)
T PRK11462         39 IFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTP  101 (460)
T ss_pred             hhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhCC
Confidence            568888888988888888888889999999996    68876666 45566666655544444

>KOG0252|consensus

Probab=89.94  E-value=0.38  Score=32.33  Aligned_cols=42  Identities=19%  Similarity=0.086  Sum_probs=34.4

Q ss_pred             HhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhcc
Q psy15540         38 LGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQS   79 (87)
Q Consensus        38 ~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~a~~   79 (87)
                      .+...|.++...+.|+.|||+..+-+.....+..+..+...|
T Consensus       359 ~~~vPGyw~tv~~id~iGRk~iq~~GF~~~~i~~~~~~~~y~  400 (538)
T KOG0252|consen  359 CSTVPGYWFTVYFIDIIGRKYIQLMGFFIMTIFFFVIAGPYN  400 (538)
T ss_pred             HccCCceeEEEEEeehhhhHHHHHhhHHHHHHHHHHHcCCcc
Confidence            344458889999999999999999999998888777766554

>KOG0637|consensus

Probab=89.42  E-value=0.12  Score=34.30  Aligned_cols=61  Identities=23%  Similarity=0.275  Sum_probs=38.7

Q ss_pred             CCccccchhHHHHHHhhHhhhhhhhhhhhhhh----hhchhHHHHHHHHH-HHHHHHHHHHhcccc
Q psy15540         21 PFPVTESDLSFIGSSMALGAVFGSPVVGNLVD----TVGRKNTMLLLAVP-TLVGWGLIIWSQSVS   81 (87)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d----~~grr~~~~~~~~~-~~~~~~~~~~a~~~~   81 (87)
                      +.+++....+.+-....+...+.+|+.|..+|    |+|||+-++....+ ..++.++...+++..
T Consensus        61 ~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~i~~~l~Lig~aaDig  126 (498)
T KOG0637|consen   61 SLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLLIAVSLFLIGYAADIG  126 (498)
T ss_pred             HcCCCcccccccccccccccceecccccccccccccccccccchHHHhhHHHHHHHhhhhhHhhhh
Confidence            34555555555545555556666888888887    58899888765544 455666666666543

>KOG2532|consensus

Probab=89.33  E-value=0.72  Score=30.67  Aligned_cols=36  Identities=17%  Similarity=0.156  Sum_probs=33.5

Q ss_pred             CCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhch
Q psy15540         21 PFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGR   56 (87)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr   56 (87)
                      .++.+..+.+++.++..+...+....+|.++||.-+
T Consensus       288 VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~  323 (466)
T KOG2532|consen  288 VLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTF  323 (466)
T ss_pred             HhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            578899999999999999999999999999999866

>KOG4686|consensus

Probab=89.28  E-value=0.17  Score=32.27  Aligned_cols=70  Identities=13%  Similarity=0.172  Sum_probs=45.2

Q ss_pred             eeeccccccccccCCCCCccccchhHHHHHHhhHhhhhhhhhhhhhhhh-hchhHHHHHHHHHHHHHHHHHH
Q psy15540          5 LGWTSPAGDRLIAGEYPFPVTESDLSFIGSSMALGAVFGSPVVGNLVDT-VGRKNTMLLLAVPTLVGWGLII   75 (87)
Q Consensus         5 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~grr~~~~~~~~~~~~~~~~~~   75 (87)
                      ++|++|..-..+- ..+.+++..+..++.+.+..-+.+-|++.|++.|| +|-|..-++-+....++.++++
T Consensus        58 fcyd~p~alq~~f-k~d~ni~~akftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~fv~~GqliFa  128 (459)
T KOG4686|consen   58 FCYDAPGALQIDF-KLDSNIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIFVFLGQLIFA  128 (459)
T ss_pred             eecCCchhhhhhh-hcccccceeeeeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHHHHHHHHHHH
Confidence            4555554322111 22567777888999999999999999999999986 4555444444444445554444

>KOG3764|consensus

Probab=88.88  E-value=0.21  Score=32.92  Aligned_cols=63  Identities=17%  Similarity=0.095  Sum_probs=41.6

Q ss_pred             CccccchhHHHHHHhhHhhhhhhhhhhhhhhhhc--hhHHHHHHHHHHHHHHHHHHHhccccccc
Q psy15540         22 FPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVG--RKNTMLLLAVPTLVGWGLIIWSQSVSRHG   84 (87)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g--rr~~~~~~~~~~~~~~~~~~~a~~~~~l~   84 (87)
                      +..+.++.+...--..+...+++.+.+.++||++  |-..-..+.+..........+++++.++.
T Consensus       301 m~~p~w~~G~~fLp~~~~y~ig~~lfg~la~k~~~~~wl~~~~gl~~~G~~~~~iP~~~~~~~L~  365 (464)
T KOG3764|consen  301 MFTPGWEVGLAFLPASLSYAIGTNLFGKLADKYPHLRWLLSLGGLATVGVSSGPIPFATSIAQLW  365 (464)
T ss_pred             ccCCCcceeeeecccccchhccCchHHHHHHhcCchhHHHHHHHHHHHHHHhchhHhhhhHHHHh
Confidence            3434446666555567788899999999999999  53433445555555555556777765543

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=88.77  E-value=1.7  Score=27.76  Aligned_cols=39  Identities=18%  Similarity=0.198  Sum_probs=20.0

Q ss_pred             ccccccCCCCCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchh
Q psy15540         12 GDRLIAGEYPFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRK   57 (87)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr   57 (87)
                      .|.+.+   +.+.+.+ .+....+..+...++   .++++||..||
T Consensus       215 lp~~L~---~~g~s~~-~~~~~~l~~~~g~~g---~~~~~d~~~r~  253 (368)
T TIGR00903       215 LEAALR---PAGLEDI-AGDAVALAILAGLIG---VAVIPDRVARA  253 (368)
T ss_pred             HHHHHH---HCCCChH-HHHHHHHHHHHHHHH---HHHhhHHhhhh
Confidence            344444   3344433 455555555544444   46677776544

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=87.65  E-value=2.8  Score=27.57  Aligned_cols=57  Identities=21%  Similarity=0.333  Sum_probs=44.8

Q ss_pred             CCccccchhHHHHHHhhHhhhhhhhhhhhhhh-hhchhHHHHHHHHHHHHHHHHHHHh
Q psy15540         21 PFPVTESDLSFIGSSMALGAVFGSPVVGNLVD-TVGRKNTMLLLAVPTLVGWGLIIWS   77 (87)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d-~~grr~~~~~~~~~~~~~~~~~~~a   77 (87)
                      .++.+..|.+.++.....|..++-...+.+.. |.++|+.-..++....++.....++
T Consensus       238 Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a  295 (403)
T PF03209_consen  238 VFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILA  295 (403)
T ss_pred             HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHH
Confidence            57899999999999999999999888887755 7777777777777776655554433

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=87.34  E-value=0.58  Score=30.38  Aligned_cols=54  Identities=19%  Similarity=0.174  Sum_probs=41.8

Q ss_pred             cccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHh
Q psy15540         24 VTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWS   77 (87)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~a   77 (87)
                      .+.+..+...++..+.-.+.-...+++..|+|.|+++.++.+...+-..+.+..
T Consensus       240 ~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~  293 (400)
T PF03825_consen  240 YSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAYF  293 (400)
T ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHh
Confidence            344455555555556556666778999999999999999999999988888877

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=87.28  E-value=2.6  Score=28.04  Aligned_cols=52  Identities=12%  Similarity=0.201  Sum_probs=36.1

Q ss_pred             hhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHH-HHHHHHHHHHHHhcc
Q psy15540         28 DLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLA-VPTLVGWGLIIWSQS   79 (87)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~-~~~~~~~~~~~~a~~   79 (87)
                      ..+...++..+-..+-.|..|..+|+.|+||-..... .+..+......++++
T Consensus        59 ~~gy~~aia~llia~LapiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~~i~~  111 (438)
T COG2270          59 YWGYASAIAGLLIALLAPILGTIADYPGPRKKFFGFFTAIGIISTFLLWFIPP  111 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHHhCC
Confidence            3455666666667777889999999999997766544 444555666666655

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=87.10  E-value=3.7  Score=27.57  Aligned_cols=53  Identities=9%  Similarity=0.137  Sum_probs=41.1

Q ss_pred             ccchhHHHHHHhhHhhhhh-hhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHh
Q psy15540         25 TESDLSFIGSSMALGAVFG-SPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWS   77 (87)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~-~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~a   77 (87)
                      +.+...++.+...+...+. .++.+++++|++|++.+......+.....++++.
T Consensus        41 gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~v   94 (472)
T TIGR00769        41 GAEIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVISPFLGFFALFAFV   94 (472)
T ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHH
Confidence            4467888888877665665 8889999999999999988777777666665543

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=86.99  E-value=2.6  Score=27.18  Aligned_cols=38  Identities=13%  Similarity=0.185  Sum_probs=26.3

Q ss_pred             CCccccchhHHHHHHhhHhhhhhhhhhhhhh-hhhchhH
Q psy15540         21 PFPVTESDLSFIGSSMALGAVFGSPVVGNLV-DTVGRKN   58 (87)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~-d~~grr~   58 (87)
                      ..+.++.+.++.......+..++..+.+.+. |+.++|.
T Consensus       248 ~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~~~~~~  286 (413)
T PRK15403        248 AGGMTTSQFAWTQVPVFGAVIVANAIVARFVKDPTEPRF  286 (413)
T ss_pred             hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhH
Confidence            4578888888887767777777777776654 5555443

>KOG2816|consensus

Probab=86.65  E-value=3.5  Score=27.57  Aligned_cols=63  Identities=13%  Similarity=0.110  Sum_probs=50.1

Q ss_pred             CCccccchhHHHHHHhhHhhhhhhhhhh-hhhhhhchhHHHHHHHHHHHHHHHHHHHhcccccc
Q psy15540         21 PFPVTESDLSFIGSSMALGAVFGSPVVG-NLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSVSRH   83 (87)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~l~d~~grr~~~~~~~~~~~~~~~~~~~a~~~~~l   83 (87)
                      .++.++.+.+.+.+.......++..+.. .+...+|-|+....+...-.+...+.+++++.+++
T Consensus       271 ~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~~~~~af~~~~w~~  334 (463)
T KOG2816|consen  271 KFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSILGEKRLISLGLLSEFLQLLLFAFATETWMM  334 (463)
T ss_pred             ecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHhccchhh
Confidence            6788899998777776666666655555 78999999998888888888999999999887763

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=85.59  E-value=3.1  Score=27.51  Aligned_cols=45  Identities=18%  Similarity=0.301  Sum_probs=35.3

Q ss_pred             hhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHH
Q psy15540         28 DLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWG   72 (87)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~   72 (87)
                      ..++......+|..+++++.+.+.|.+|-|..+....+...++.+
T Consensus       142 ~~~~~~~~~niG~~ig~~l~g~l~~~~g~~~~f~~~~~~~~~~~l  186 (475)
T TIGR00924       142 GFTLFYMSINIGSFISPLLAGVIAENYGYHVGFNLAAVGMVIGLL  186 (475)
T ss_pred             eehhHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHH
Confidence            457777788899999999999999999999888776654444433

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>KOG3574|consensus

Probab=83.92  E-value=1.3  Score=29.45  Aligned_cols=55  Identities=18%  Similarity=0.169  Sum_probs=35.6

Q ss_pred             ceeeeeccccccccccCCCCCccccchhHHHHHHhhHhhhhhhhhhhhhhh-----hhchhHHHHH
Q psy15540          2 GTILGWTSPAGDRLIAGEYPFPVTESDLSFIGSSMALGAVFGSPVVGNLVD-----TVGRKNTMLL   62 (87)
Q Consensus         2 g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d-----~~grr~~~~~   62 (87)
                      |+.+|... .+|.+.+   .-+.+-++++.+...+.-  ..--+.+.++.|     |+|||+.-++
T Consensus        44 GiP~GL~~-~iP~lL~---ak~vSyt~~a~fS~ay~P--~sLKllWaPiVDs~y~k~~GrrksWvv  103 (510)
T KOG3574|consen   44 GIPLGLIG-AIPLLLQ---AKGVSYTSQAIFSFAYWP--FSLKLLWAPIVDSVYSKRFGRRKSWVV  103 (510)
T ss_pred             CCchhHhh-hhHHHhc---CCCcchhhhhhhhhhhhH--HHHHHHHHhhhHHHHHHhhccccceee
Confidence            55666666 6787776   556676666665443321  112456788888     9999987654

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=83.22  E-value=3.4  Score=27.19  Aligned_cols=54  Identities=15%  Similarity=0.063  Sum_probs=38.5

Q ss_pred             CCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhc-----hhHHHHHHH-HHHHHHHHHHH
Q psy15540         21 PFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVG-----RKNTMLLLA-VPTLVGWGLII   75 (87)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g-----rr~~~~~~~-~~~~~~~~~~~   75 (87)
                      |++++....+.+.++..+.... .+..|+.+|+.+     ||.-++... ++...+..+.+
T Consensus         9 EL~vpA~lv~~lval~~~~ap~-R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap   68 (403)
T PF03209_consen    9 ELGVPAWLVALLVALHYLVAPL-RVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAP   68 (403)
T ss_pred             HhccHHHHHHHHHHHHHHHHHH-HHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHH
Confidence            5677777788888877777655 888899999999     997777644 44444444433

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=82.35  E-value=6.8  Score=26.19  Aligned_cols=43  Identities=19%  Similarity=0.203  Sum_probs=33.7

Q ss_pred             hHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHH
Q psy15540         29 LSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGW   71 (87)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~   71 (87)
                      .+.......+|..++++..+++.|++|-|..+.+..+...++.
T Consensus       152 ~~~~~~~~~iG~~~gp~i~g~l~~~~g~~~~F~i~~i~~~i~~  194 (500)
T PRK09584        152 FTMYYMSINIGSFFSMLATPWLAAKYGWSVAFALSVVGMLITV  194 (500)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHH
Confidence            4555667788999999999999999999998887765444443

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=81.99  E-value=7.2  Score=25.84  Aligned_cols=60  Identities=22%  Similarity=0.183  Sum_probs=41.0

Q ss_pred             CccccchhH-HHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhcccc
Q psy15540         22 FPVTESDLS-FIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSVS   81 (87)
Q Consensus        22 ~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~a~~~~   81 (87)
                      .+++++|.. -+.-..........++...+.|..+.|++++...+...+...+.-+.++..
T Consensus        35 kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~~sv~   95 (412)
T PF01770_consen   35 KNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLFGTSVL   95 (412)
T ss_pred             cCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHCcHH
Confidence            566766653 222233344555566677899999999999998888777777766666544

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=81.57  E-value=4.1  Score=27.05  Aligned_cols=47  Identities=15%  Similarity=-0.009  Sum_probs=39.7

Q ss_pred             CccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHH
Q psy15540         22 FPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTL   68 (87)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~   68 (87)
                      -|.++...+.+-+...+....+.+...++.+|+|..+.=..+.....
T Consensus       288 ~G~s~~~igi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~  334 (432)
T PF06963_consen  288 QGYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQW  334 (432)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHH
Confidence            38899999999999999999999999999999998877666655443

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>TIGR01272 gluP glucose/galactose transporter

Probab=81.47  E-value=3.6  Score=25.63  Aligned_cols=33  Identities=24%  Similarity=0.239  Sum_probs=25.7

Q ss_pred             HHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHH
Q psy15540         30 SFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLL   62 (87)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~   62 (87)
                      +-+.....+|..+.+++.|.++|+.|.+..+.+
T Consensus       267 sai~~~~~~Gg~i~P~l~G~lad~~g~~~a~~v  299 (310)
T TIGR01272       267 SGILCLAIVGGAIVPLLQGSLADCLGIQLAFAL  299 (310)
T ss_pred             HHHHHHHHhcchHHHHHHHHHHHhccchHHHHH
Confidence            334456678888889999999999998877653

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=81.40  E-value=4.7  Score=27.11  Aligned_cols=59  Identities=20%  Similarity=0.197  Sum_probs=45.7

Q ss_pred             CCccccchhHHHHHHhhHhhhhhhhhhhhhhhh----hchhHHHH-HHHHHHHHHHHHHHHhcc
Q psy15540         21 PFPVTESDLSFIGSSMALGAVFGSPVVGNLVDT----VGRKNTML-LLAVPTLVGWGLIIWSQS   79 (87)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~----~grr~~~~-~~~~~~~~~~~~~~~a~~   79 (87)
                      ..|+++...+.+..+.-+-=++.-|+.|.+.||    +|||+-.+ .+.+...+...++..+++
T Consensus        42 v~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~l~F~~p~  105 (467)
T COG2211          42 VFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVLLFITPD  105 (467)
T ss_pred             ccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHHHHHHcCCC
Confidence            568888888888888878888888999999986    56655544 566888888877777775

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=80.12  E-value=7.1  Score=26.36  Aligned_cols=47  Identities=15%  Similarity=0.195  Sum_probs=36.2

Q ss_pred             hhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHH
Q psy15540         28 DLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLI   74 (87)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~   74 (87)
                      ..++......++..+++.+.+++.+++|-+..+..+.+...++.+..
T Consensus       139 gf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~iaaigm~l~li~~  185 (493)
T PRK15462        139 GFSLMYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAVGMIAGLVIF  185 (493)
T ss_pred             eehHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHH
Confidence            46777777778999999999999999999998877665554444443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	87
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.21
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.1
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	98.98
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	98.97
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	98.86
2xut_A	524	Proton/peptide symporter family protein; transport	98.65
2cfq_A	417	Lactose permease; transport, transport mechanism,	98.49
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	98.04
2cfq_A	417	Lactose permease; transport, transport mechanism,	97.61
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	97.44
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	97.22
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	95.25
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	93.19

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.21  E-value=2.9e-12  Score=80.49  Aligned_cols=53  Identities=23%  Similarity=0.375  Sum_probs=48.3

Q ss_pred             cccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHH
Q psy15540         24 VTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIW   76 (87)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~   76 (87)
                      .++++.+++.+.+.+|..+|++++|+++||+|||+++..+.++..++.+.+++
T Consensus        52 ~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~  104 (491)
T 4gc0_A           52 AANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAW  104 (491)
T ss_dssp             HHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHH
Confidence            34456789999999999999999999999999999999999999999999885

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.10  E-value=2.7e-11  Score=74.97  Aligned_cols=75  Identities=13%  Similarity=0.076  Sum_probs=65.4

Q ss_pred             eeccccccccccCCCCCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHH---HHhccccc
Q psy15540          6 GWTSPAGDRLIAGEYPFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLI---IWSQSVSR   82 (87)
Q Consensus         6 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~---~~a~~~~~   82 (87)
                      +...+..|.+.+   +++.++++.+++.+...++..++.++.|+++||+|||+++..+.++..++.++.   ..+++++.
T Consensus        43 ~~~~~~~~~~~~---~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~  119 (438)
T 3o7q_A           43 NLNDILLPQFQQ---AFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTL  119 (438)
T ss_dssp             HHHHHHHHHHHH---HSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HhHHHHHHHHHH---HcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccccccHHH
Confidence            344555677776   889999999999999999999999999999999999999999999999999988   77777655


Q ss_pred             c
Q psy15540         83 H   83 (87)
Q Consensus        83 l   83 (87)
                      +
T Consensus       120 l  120 (438)
T 3o7q_A          120 F  120 (438)
T ss_dssp             H
T ss_pred             H
Confidence            4

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=98.98  E-value=4.3e-10  Score=69.75  Aligned_cols=71  Identities=14%  Similarity=0.124  Sum_probs=62.5

Q ss_pred             cccccccccCCCCCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHH----hcccccc
Q psy15540          9 SPAGDRLIAGEYPFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIW----SQSVSRH   83 (87)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~----a~~~~~l   83 (87)
                      .+..|.+.+   ++ .++.+.+++.+...++..++.++.|+++||+|||+++..+.++..++.++.++    +++++.+
T Consensus        48 ~~~~~~~~~---~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l  122 (451)
T 1pw4_A           48 ALAMPYLVE---QG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVM  122 (451)
T ss_dssp             HHHHHHTTS---ST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHH
T ss_pred             HHHHHHHHH---Hh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhccccHHHH
Confidence            344555655   77 89999999999999999999999999999999999999999999999999998    7776654

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=98.97  E-value=1e-10  Score=71.43  Aligned_cols=73  Identities=16%  Similarity=0.142  Sum_probs=63.8

Q ss_pred             ccccccccccCCCCCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhcccccc
Q psy15540          8 TSPAGDRLIAGEYPFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSVSRH   83 (87)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~a~~~~~l   83 (87)
                      ..+..|.+.+   +++.++++.+++.+...++..++.++.|+++||+|||+++..+.....++.....++++++.+
T Consensus        19 ~~~~~~~~~~---~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l   91 (375)
T 2gfp_A           19 YIPAIADMAR---DLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTSSLTVL   91 (375)
T ss_dssp             HHHHHHHHHT---TSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhhhhHHHHH---HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhccHHHH
Confidence            3455566666   889999999999999999999999999999999999999999999999999888888776543

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=98.86  E-value=4.6e-09  Score=66.05  Aligned_cols=63  Identities=14%  Similarity=0.163  Sum_probs=58.3

Q ss_pred             CCccccchhHHHHHHhhHhhhhhhhhhhhhhhh-hchhHHHHHHHHHHHHHHHHHHHhcccccc
Q psy15540         21 PFPVTESDLSFIGSSMALGAVFGSPVVGNLVDT-VGRKNTMLLLAVPTLVGWGLIIWSQSVSRH   83 (87)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~grr~~~~~~~~~~~~~~~~~~~a~~~~~l   83 (87)
                      +++.++.+.+++.+...++..+++++.|+++|| +|||+++..+.++..++.++.+++++++.+
T Consensus        48 ~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~  111 (491)
T 4aps_A           48 DLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASAL  111 (491)
T ss_dssp             SCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHH
T ss_pred             hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence            589999999999999999999999999999999 899999999999999999999988877554

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=98.65  E-value=2.2e-08  Score=63.46  Aligned_cols=59  Identities=24%  Similarity=0.273  Sum_probs=54.6

Q ss_pred             cccchhHHHHHHhhHhhhhhhhhhhhhhhhh-chhHHHHHHHHHHHHHHHHHHHhc-cccc
Q psy15540         24 VTESDLSFIGSSMALGAVFGSPVVGNLVDTV-GRKNTMLLLAVPTLVGWGLIIWSQ-SVSR   82 (87)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-grr~~~~~~~~~~~~~~~~~~~a~-~~~~   82 (87)
                      .++.+.+++.+.+.++..++.++.|+++||+ |||+++..+.++..++.++..+++ +++.
T Consensus        51 ~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~  111 (524)
T 2xut_A           51 LRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQG  111 (524)
T ss_dssp             TTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCHHH
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcccHHH
Confidence            8999999999999999999999999999999 999999999999999998888887 6554

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=98.49  E-value=5.3e-08  Score=60.58  Aligned_cols=58  Identities=22%  Similarity=0.271  Sum_probs=48.0

Q ss_pred             ccccccccCCCCCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHH
Q psy15540         10 PAGDRLIAGEYPFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLV   69 (87)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~   69 (87)
                      +..|....  ++++.++.+.+++.+...++..+++++.|+++||+|||+++..+..+..+
T Consensus        28 ~~~~~~l~--~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~   85 (417)
T 2cfq_A           28 PFFPIWLH--DINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLV   85 (417)
T ss_dssp             TTHHHHHH--TTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTS
T ss_pred             HHHHHHHH--HHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence            44554333  16789999999999999999999999999999999999999887766543

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=98.04  E-value=6.4e-06  Score=50.92  Aligned_cols=60  Identities=7%  Similarity=-0.086  Sum_probs=52.4

Q ss_pred             CCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhccc
Q psy15540         21 PFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSV   80 (87)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~a~~~   80 (87)
                      .++.++.+.++..+...++..++.++.+++.||+|||+.+..+..+..++.+...+.++.
T Consensus       289 ~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~  348 (438)
T 3o7q_A          289 IPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGH  348 (438)
T ss_dssp             STTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCHH
T ss_pred             cCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcCCc
Confidence            458889999999999999999999999999999999999999888888877777766554

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=97.61  E-value=6.2e-05  Score=46.80  Aligned_cols=54  Identities=15%  Similarity=0.060  Sum_probs=40.6

Q ss_pred             cchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhcc
Q psy15540         26 ESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQS   79 (87)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~a~~   79 (87)
                      ....+...+...++..++.+..++++||+|||+.+..+.....+......+.++
T Consensus       258 ~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~  311 (417)
T 2cfq_A          258 TRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATS  311 (417)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCS
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            344566667777778888999999999999999988877777666555554444

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=97.44  E-value=0.00019  Score=44.41  Aligned_cols=57  Identities=11%  Similarity=0.070  Sum_probs=46.5

Q ss_pred             CCccccchhHHHHHHhhHhhhhhhhhhhhhhhhh--chhHHHHHHHHHHH-HHHHHHHHh
Q psy15540         21 PFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTV--GRKNTMLLLAVPTL-VGWGLIIWS   77 (87)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~--grr~~~~~~~~~~~-~~~~~~~~a   77 (87)
                      .++.++.+.+++.+...++..++.++.+++.||+  |||+.+..+..+.. ++.....+.
T Consensus       282 ~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  341 (451)
T 1pw4_A          282 VKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMN  341 (451)
T ss_dssp             BSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSC
T ss_pred             hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHh
Confidence            4788899999999999999999999999999999  99998887776655 444444433

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=97.22  E-value=0.00052  Score=43.07  Aligned_cols=54  Identities=13%  Similarity=-0.003  Sum_probs=40.4

Q ss_pred             CccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHH
Q psy15540         22 FPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLII   75 (87)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~   75 (87)
                      .+.+............+...++.++.+++.||+|||+.++.+.....++.+..+
T Consensus       307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~  360 (491)
T 4gc0_A          307 LGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLG  360 (491)
T ss_dssp             SSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHH
Confidence            344455555666667778888899999999999999998888777666555443

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=95.25  E-value=0.0069  Score=38.00  Aligned_cols=55  Identities=11%  Similarity=-0.020  Sum_probs=35.6

Q ss_pred             CccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHH-----HHHHHHHHHHHHHHH
Q psy15540         22 FPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTML-----LLAVPTLVGWGLIIW   76 (87)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~-----~~~~~~~~~~~~~~~   76 (87)
                      .+.+..+.++..+...++..++.++.+++.||+|||+...     .+..+..++..+...
T Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~  373 (491)
T 4aps_A          314 VDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAI  373 (491)
T ss_dssp             CCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHH
T ss_pred             hccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHH
Confidence            3444456677777777888888999999999999986544     455554444444333

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=93.19  E-value=0.034  Score=33.65  Aligned_cols=36  Identities=14%  Similarity=0.090  Sum_probs=32.4

Q ss_pred             CccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchh
Q psy15540         22 FPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRK   57 (87)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr   57 (87)
                      .+.++.+.+.+.+...++..++.+..+++.||.+||
T Consensus       230 ~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~  265 (375)
T 2gfp_A          230 LGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTL  265 (375)
T ss_dssp             HHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHH
T ss_pred             hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            677888899999999999999999999999999884

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	87
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	98.97
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	98.92
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	97.22
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	96.26

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=98.97  E-value=6.4e-10  Score=67.13  Aligned_cols=58  Identities=12%  Similarity=0.107  Sum_probs=54.0

Q ss_pred             CCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhc
Q psy15540         21 PFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQ   78 (87)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~a~   78 (87)
                      +.+.++++.+++.+.+.++..++.++.|+++||+|||+++..+.++..++.+++++++
T Consensus        53 ~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~  110 (447)
T d1pw4a_          53 EQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVP  110 (447)
T ss_dssp             SSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred             HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhhccccc
Confidence            5799999999999999999999999999999999999999999999998888887664

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=98.92  E-value=8e-11  Score=69.72  Aligned_cols=69  Identities=20%  Similarity=0.176  Sum_probs=56.7

Q ss_pred             ccccccc-cccCCCCCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhcc
Q psy15540          8 TSPAGDR-LIAGEYPFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQS   79 (87)
Q Consensus         8 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~a~~   79 (87)
                      ..+..|. +.+   +++.++++.+++.+...++..++.++.|+++||+|||++++.+.....++........+
T Consensus        26 ~~~~l~~~l~~---~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~~~~~~~~   95 (417)
T d1pv7a_          26 YFPFFPIWLHD---INHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIF   95 (417)
T ss_dssp             HHHHHHHHHHH---HHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHHHHHHHHHHTHHHHHHHTH
T ss_pred             HHHHHHHHHHH---ccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHhhh
Confidence            3445554 333   57899999999999999999999999999999999999999888888777776665543

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=97.22  E-value=0.00022  Score=41.42  Aligned_cols=60  Identities=13%  Similarity=0.029  Sum_probs=49.5

Q ss_pred             ccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhccccc
Q psy15540         23 PVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSVSR   82 (87)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~a~~~~~   82 (87)
                      +.+....+.......++..++....+++.||.|||+.+..+..+..+......+.++.+.
T Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (417)
T d1pv7a_         255 EQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALE  314 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCCCHHH
T ss_pred             ccchhhhcccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhccccccccch
Confidence            444556677777788888899999999999999999999999999888888887776543

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=96.26  E-value=0.0055  Score=36.13  Aligned_cols=42  Identities=17%  Similarity=0.029  Sum_probs=36.1

Q ss_pred             CCccccchhHHHHHHhhHhhhhhhhhhhhhhhhhchhHHHHH
Q psy15540         21 PFPVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLL   62 (87)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~   62 (87)
                      ..+.+..+.++......++..++.++.+++.||++||+....
T Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  320 (447)
T d1pw4a_         279 VKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGAT  320 (447)
T ss_dssp             BSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHH
T ss_pred             ccccccchhhhhhhcchhhhhhhhhhhhhhhhhccccccccc
Confidence            567888899999999999999999999999999998764443