Psyllid ID: psy15554

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------34
VVNFLNDLYTLFDRIIKGYDVYKVETIGDAYMVILAVTSVFFICVSVVSFALKTHPDMRVPTIRNSSFFISLDNSTAWVLHKEKTDPHAAFFYVELACNAWFTFELLVRAVVSPNIFQFIRSPVNVIDIIATLSFYTDILLQDKVQQSDILEFFSIIRILRLFKLTRHSPGLKILIHTFKASAKELTLLVFFLVLGIVVFASLVYYAERLQVSPNIFQFIRSPVNVIDIIATLSFYTDILLQDKVQQSDILEFFSIIRILRLFKLTRHSPGLKILIHTFKASAKELTLLVFFLVLGIVVFASLVYYAERLQTLDRLYEYSKLEIAIDYTSLKISSFLDV
cccccHHcHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccEEccccccccccccccccccccHHEEHHHHHHHHHHHHHHHHHHccccHHHccccHHHHHHHHHHHHHHHHHHccccccccEEEEHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccEEEEEEEEccEEEEEEEcccccccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEcccccccccccccccccEEEEEEEEccccc
ccHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHccHcccccccccccccccccccccccccccccccccEHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHcccccccccccccccHHHHEEEEEEEEEEEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHccc
VVNFLNDLYTLFDRIikgydvykvetiGDAYMVILAVTSVFFICVSVVSFalkthpdmrvptirnssffisldnstawvlhkektdphaAFFYVELACNAWFTFELLVRAVvspnifqfirspvNVIDIIATLSFYTDILLQDKVQQSDILEFFSIIRILRLFKLtrhspglkILIHTFKASAKELTLLVFFLVLGIVVFASLVYYAERLQVSPNIFQFIRSPVNVIDIIATLSFYTDILLQDKVQQSDILEFFSIIRILRLFKLtrhspglkILIHTFKASAKELTLLVFFLVLGIVVFASLVYYAERLQTLDRLYEYSKLEIAIDYTSLKISSFLDV
VVNFLNDLYTLFDRIIKGYDVYKVETIGDAYMVILAVTSVFFICVSVVSFalkthpdmrvPTIRNSSFFISLDNSTAWVLHKEKTDPHAAFFYVELACNAWFTFELLVRAVVSPNIFQFIRSPVNVIDIIATLSFYTDILLQDKVQQSDILEFFSIIRILRLFKLTRHSPGLKILIHTFKASAKELTLLVFFLVLGIVVFASLVYYAERLQVSPNIFQFIRSPVNVIDIIATLSFYTDILLQDKVQQSDILEFFSIIRILRLFKLTRHSPGLKILIHTFKASAKELTLLVFFLVLGIVVFASLVYYAERLQTLDRLYEYSKLeiaidytslkissfldv
VVNFLNDLYTLFDRIIKGYDVYKVETIGDAYMVILAvtsvfficvsvvsfALKTHPDMRVPTIRNSSFFISLDNSTAWVLHKEKTDPHAAFFYVELACNAWFTFELLVRAVVSPNIFQFIRSPVNVIDIIATLSFYTDILLQDKVQQSDILEFFSIIRILRLFKLTRHSPGLKILIHTFKASAKELTllvfflvlgivvfASLVYYAERLQVSPNIFQFIRSPVNVIDIIATLSFYTDILLQDKVQQSDILEFFSIIRILRLFKLTRHSPGLKILIHTFKASAKELTllvfflvlgivvfASLVYYAERLQTLDRLYEYSKLEIAIDYTSLKISSFLDV
**NFLNDLYTLFDRIIKGYDVYKVETIGDAYMVILAVTSVFFICVSVVSFALKTHPDMRVPTIRNSSFFISLDNSTAWVLHKEKTDPHAAFFYVELACNAWFTFELLVRAVVSPNIFQFIRSPVNVIDIIATLSFYTDILLQDKVQQSDILEFFSIIRILRLFKLTRHSPGLKILIHTFKASAKELTLLVFFLVLGIVVFASLVYYAERLQVSPNIFQFIRSPVNVIDIIATLSFYTDILLQDKVQQSDILEFFSIIRILRLFKLTRHSPGLKILIHTFKASAKELTLLVFFLVLGIVVFASLVYYAERLQTLDRLYEYSKLEIAIDYTSLKISS****
**NFLNDLYTLFDRIIKGYDVYKVETIGDAYMVILAVTSVFFICVSVVSFALKTHPDMRVPTIRNSSFFISLDNSTAWVLHKEKTDPHAAFFYVELACNAWFTFELLVRAVVSPNIFQFIRSPVNVIDIIATLSFYTDILLQDKVQQSDILEFFSIIRILRLFKLTRHSPGLKILIHTFKASAKELTLLVFFLVLGIVVFASLVYYAERLQVSPNIFQFIRSPVNVIDIIATLSFYTDILLQDKVQQSDILEFFSIIRILRLFKLTRHSPGLKILIHTFKASAKELTLLVFFLVLGIVVFASLVYYAERLQTLDRLYEYSKLEIAIDYTSLKISSFLDV
VVNFLNDLYTLFDRIIKGYDVYKVETIGDAYMVILAVTSVFFICVSVVSFALKTHPDMRVPTIRNSSFFISLDNSTAWVLHKEKTDPHAAFFYVELACNAWFTFELLVRAVVSPNIFQFIRSPVNVIDIIATLSFYTDILLQDKVQQSDILEFFSIIRILRLFKLTRHSPGLKILIHTFKASAKELTLLVFFLVLGIVVFASLVYYAERLQVSPNIFQFIRSPVNVIDIIATLSFYTDILLQDKVQQSDILEFFSIIRILRLFKLTRHSPGLKILIHTFKASAKELTLLVFFLVLGIVVFASLVYYAERLQTLDRLYEYSKLEIAIDYTSLKISSFLDV
VVNFLNDLYTLFDRIIKGYDVYKVETIGDAYMVILAVTSVFFICVSVVSFALKTHPDMRV**********************EKTDPHAAFFYVELACNAWFTFELLVRAVVSPNIFQFIRSPVNVIDIIATLSFYTDILLQDKVQQSDILEFFSIIRILRLFKLTRHSPGLKILIHTFKASAKELTLLVFFLVLGIVVFASLVYYAERLQVSPNIFQFIRSPVNVIDIIATLSFYTDILLQDKVQQSDILEFFSIIRILRLFKLTRHSPGLKILIHTFKASAKELTLLVFFLVLGIVVFASLVYYAERLQTLDRLYEYSKLEIAIDYTSLKISSFLDV
oooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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VVNFLNDLYTLFDRIIKGYDVYKVETIGDAYMVILAVTSVFFICVSVVSFALKTHPDMRVPTIRNSSFFISLDNSTAWVLHKEKTDPHAAFFYVELACNAWFTFELLVRAVVSPNIFQFIRSPVNVIDIIATLSFYTDILLQDKVQQSDILEFFSIIRILRLFKLTRHSPGLKILIHTFKASAKELTLLVFFLVLGIVVFASLVYYAERLQVSPNIFQFIRSPVNVIDIIATLSFYTDILLQDKVQQSDILEFFSIIRILRLFKLTRHSPGLKILIHTFKASAKELTLLVFFLVLGIVVFASLVYYAERLQTLDRLYEYSKLEIAIDYTSLKISSFLDV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query339 2.2.26 [Sep-21-2011]
P17972498 Potassium voltage-gated c no N/A 0.578 0.393 0.611 4e-60
G5EFC3558 Potassium voltage-gated c no N/A 0.598 0.363 0.464 4e-39
Q14B80 642 Potassium voltage-gated c yes N/A 0.516 0.272 0.443 2e-30
P22462 638 Potassium voltage-gated c yes N/A 0.516 0.274 0.443 2e-30
Q96PR1 638 Potassium voltage-gated c no N/A 0.516 0.274 0.443 4e-30
P15388511 Potassium voltage-gated c no N/A 0.536 0.356 0.410 3e-29
P48547511 Potassium voltage-gated c no N/A 0.536 0.356 0.405 5e-29
P25122585 Potassium voltage-gated c no N/A 0.536 0.311 0.410 5e-29
P16390528 Potassium voltage-gated c no N/A 0.528 0.339 0.388 3e-26
Q03721 635 Potassium voltage-gated c no N/A 0.525 0.280 0.393 3e-26
>sp|P17972|KCNAW_DROME Potassium voltage-gated channel protein Shaw OS=Drosophila melanogaster GN=Shaw PE=2 SV=1 Back     alignment and function desciption
 Score =  231 bits (590), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 129/211 (61%), Positives = 161/211 (76%), Gaps = 15/211 (7%)

Query: 8   LYTLFDRIIKGYDVYKVETIGDAYMVILAVTSVFFICVSVVSFALKTHPDMRVPTIRNSS 67
           +++LFD   + Y     +TIG        V SVFFIC+S++SF LKTHPDMRVP +RN +
Sbjct: 160 IWSLFD---EPYSSNAAKTIG--------VVSVFFICISILSFCLKTHPDMRVPIVRNIT 208

Query: 68  FFISLDNSTAWVLHKEKTDPHAAFFYVELACNAWFTFELLVRAVVSPNIFQFIRSPVNVI 127
              + + S  W L K +T+ H AFFY+E  CNAWFTFE+LVR + SPN ++FI+S VN+I
Sbjct: 209 V-KTANGSNGWFLDKTQTNAHIAFFYIECVCNAWFTFEILVRFISSPNKWEFIKSSVNII 267

Query: 128 DIIATLSFYTDILLQ---DKVQQSDILEFFSIIRILRLFKLTRHSPGLKILIHTFKASAK 184
           D IATLSFY D++LQ     ++ +DILEFFSIIRI+RLFKLTRHS GLKILI TF+ASAK
Sbjct: 268 DYIATLSFYIDLVLQRFASHLENADILEFFSIIRIMRLFKLTRHSSGLKILIQTFRASAK 327

Query: 185 ELTLLVFFLVLGIVVFASLVYYAERLQVSPN 215
           ELTLLVFFLVLGIV+FASLVYYAER+Q +P+
Sbjct: 328 ELTLLVFFLVLGIVIFASLVYYAERIQPNPH 358
Mediates the voltage-dependent potassium ion permeability of excitable membranes. Assuming opened or closed conformations in response to the voltage difference across the membrane, the protein forms a potassium-selective channel through which potassium ions may pass in accordance with their electrochemical gradient.
Drosophila melanogaster (taxid: 7227)
>sp|G5EFC3|KCNAG_CAEEL Potassium voltage-gated channel protein egl-36 OS=Caenorhabditis elegans GN=egl-36 PE=1 SV=1 Back     alignment and function description
>sp|Q14B80|KCNC2_MOUSE Potassium voltage-gated channel subfamily C member 2 OS=Mus musculus GN=Kcnc2 PE=1 SV=1 Back     alignment and function description
>sp|P22462|KCNC2_RAT Potassium voltage-gated channel subfamily C member 2 OS=Rattus norvegicus GN=Kcnc2 PE=1 SV=1 Back     alignment and function description
>sp|Q96PR1|KCNC2_HUMAN Potassium voltage-gated channel subfamily C member 2 OS=Homo sapiens GN=KCNC2 PE=1 SV=1 Back     alignment and function description
>sp|P15388|KCNC1_MOUSE Potassium voltage-gated channel subfamily C member 1 OS=Mus musculus GN=Kcnc1 PE=2 SV=1 Back     alignment and function description
>sp|P48547|KCNC1_HUMAN Potassium voltage-gated channel subfamily C member 1 OS=Homo sapiens GN=KCNC1 PE=2 SV=1 Back     alignment and function description
>sp|P25122|KCNC1_RAT Potassium voltage-gated channel subfamily C member 1 OS=Rattus norvegicus GN=Kcnc1 PE=2 SV=1 Back     alignment and function description
>sp|P16390|KCNA3_MOUSE Potassium voltage-gated channel subfamily A member 3 OS=Mus musculus GN=Kcna3 PE=2 SV=3 Back     alignment and function description
>sp|Q03721|KCNC4_HUMAN Potassium voltage-gated channel subfamily C member 4 OS=Homo sapiens GN=KCNC4 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query339
328707216 601 PREDICTED: potassium voltage-gated chann 0.551 0.311 0.691 4e-64
321475342 508 hypothetical protein DAPPUDRAFT_44795 [D 0.530 0.354 0.653 2e-63
443684694 604 hypothetical protein CAPTEDRAFT_218764 [ 0.613 0.344 0.603 7e-62
241860160 481 voltage-gated channel, putative [Ixodes 0.528 0.372 0.701 1e-61
427798781 451 Putative potassium voltage-gated channel 0.528 0.396 0.701 1e-61
321473965 486 hypothetical protein DAPPUDRAFT_46499 [D 0.530 0.370 0.704 7e-61
158296934 454 AGAP008200-PA [Anopheles gambiae str. PE 0.533 0.398 0.686 1e-59
1100227 489 Shaw potassium channel [Panulirus interr 0.578 0.400 0.611 2e-59
328723490 471 PREDICTED: potassium voltage-gated chann 0.589 0.424 0.595 4e-59
325297082 514 Shaw potassium channel Kv3.1a [Aplysia c 0.584 0.385 0.608 7e-59
>gi|328707216|ref|XP_001951310.2| PREDICTED: potassium voltage-gated channel protein Shaw-like [Acyrthosiphon pisum] Back     alignment and taxonomy information
 Score =  251 bits (641), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 137/198 (69%), Positives = 157/198 (79%), Gaps = 11/198 (5%)

Query: 34  ILAVTSVFFICVSVVSFALKTHPDMRVPTIRN------SSFFISLDNSTAWVLHKEKTDP 87
           ++AV SVFFICVSV+SFALKTHPD+RV T+RN             D    WVL K++TDP
Sbjct: 170 VVAVISVFFICVSVLSFALKTHPDLRVATLRNVTVPKDRPPAPGEDPPMEWVLSKDRTDP 229

Query: 88  HAAFFYVELACNAWFTFELLVRAVVSPNIFQFIRSPVNVIDIIATLSFYTDILLQD---- 143
           H AFFYVEL CN WFTFELL R++V+PN+  F +SPVN+ID +ATLSFYTD +LQ     
Sbjct: 230 HEAFFYVELVCNVWFTFELLARSIVTPNLVHFAKSPVNIIDFVATLSFYTDTMLQSTLAH 289

Query: 144 KVQQSDILEFFSIIRILRLFKLTRHSPGLKILIHTFKASAKELTLLVFFLVLGIVVFASL 203
           +   ++ILEFFSIIRILRLFKLTRHSPGLKILIHTFKASAKELTLLVFFLVLGIVVFASL
Sbjct: 290 RFDNTEILEFFSIIRILRLFKLTRHSPGLKILIHTFKASAKELTLLVFFLVLGIVVFASL 349

Query: 204 VYYAERLQVSP-NIFQFI 220
           VYYAERLQ +P N F+ I
Sbjct: 350 VYYAERLQANPQNDFKSI 367

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|321475342|gb|EFX86305.1| hypothetical protein DAPPUDRAFT_44795 [Daphnia pulex] Back     alignment and taxonomy information
>gi|443684694|gb|ELT88551.1| hypothetical protein CAPTEDRAFT_218764 [Capitella teleta] Back     alignment and taxonomy information
>gi|241860160|ref|XP_002416271.1| voltage-gated channel, putative [Ixodes scapularis] gi|215510485|gb|EEC19938.1| voltage-gated channel, putative [Ixodes scapularis] Back     alignment and taxonomy information
>gi|427798781|gb|JAA64842.1| Putative potassium voltage-gated channel protein shaw, partial [Rhipicephalus pulchellus] Back     alignment and taxonomy information
>gi|321473965|gb|EFX84931.1| hypothetical protein DAPPUDRAFT_46499 [Daphnia pulex] Back     alignment and taxonomy information
>gi|158296934|ref|XP_317268.4| AGAP008200-PA [Anopheles gambiae str. PEST] gi|157014951|gb|EAA12472.5| AGAP008200-PA [Anopheles gambiae str. PEST] Back     alignment and taxonomy information
>gi|1100227|gb|AAB39267.1| Shaw potassium channel [Panulirus interruptus] Back     alignment and taxonomy information
>gi|328723490|ref|XP_001951251.2| PREDICTED: potassium voltage-gated channel protein Shaw-like [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|325297082|ref|NP_001191546.1| Shaw potassium channel Kv3.1a [Aplysia californica] gi|3219511|gb|AAC23503.1| Shaw potassium channel Kv3.1a [Aplysia californica] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query339
FB|FBgn0003386498 Shaw "Shaker cognate w" [Droso 0.495 0.337 0.595 1.6e-47
FB|FBgn0085395 941 Shawl "Shaw-like" [Drosophila 0.445 0.160 0.561 6.8e-40
WB|WBGene00004793479 shw-3 [Caenorhabditis elegans 0.548 0.388 0.451 1e-36
WB|WBGene00008819619 shw-1 [Caenorhabditis elegans 0.539 0.295 0.471 3.4e-33
WB|WBGene00001202558 egl-36 [Caenorhabditis elegans 0.530 0.322 0.413 6.5e-33
UNIPROTKB|D4A377408 Kcnc2 "Potassium voltage-gated 0.466 0.387 0.4 4.6e-25
UNIPROTKB|F1PGG2569 KCNC2 "Uncharacterized protein 0.466 0.277 0.394 3.3e-24
UNIPROTKB|Q96PR1 638 KCNC2 "Potassium voltage-gated 0.466 0.247 0.4 3.5e-24
RGD|628829 638 Kcnc2 "potassium voltage gated 0.466 0.247 0.4 3.5e-24
UNIPROTKB|J9P810 624 KCNC2 "Uncharacterized protein 0.466 0.253 0.394 4.3e-24
FB|FBgn0003386 Shaw "Shaker cognate w" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 497 (180.0 bits), Expect = 1.6e-47, P = 1.6e-47
 Identities = 103/173 (59%), Positives = 125/173 (72%)

Query:    52 LKTHPDMRVPTIRNSSFFISLDNSTAWVLHKEKTDPHAAFFYVELACNAWFTFELLVRAV 111
             LKTHPDMRVP +RN +   + + S  W L K +T+ H AFFY+E  CNAWFTFE+LVR +
Sbjct:   193 LKTHPDMRVPIVRNITVKTA-NGSNGWFLDKTQTNAHIAFFYIECVCNAWFTFEILVRFI 251

Query:   112 VSPNIFQFIRSPVNVIDIIATLSFYTDILLQ---DKVQQSDILEFFSIIRILRLFKLTRH 168
              SPN ++FI+S VN+ID IATLSFY D++LQ     ++ +DILEFFSIIRI+RLFKLTRH
Sbjct:   252 SSPNKWEFIKSSVNIIDYIATLSFYIDLVLQRFASHLENADILEFFSIIRIMRLFKLTRH 311

Query:   169 SPGLKILIHTFKASAKELTXXXXXXXXXXXXXASLVYYAERLQVSP-NIFQFI 220
             S GLKILI TF+ASAKELT             ASLVYYAER+Q +P N F  I
Sbjct:   312 SSGLKILIQTFRASAKELTLLVFFLVLGIVIFASLVYYAERIQPNPHNDFNSI 364
GO:0005886 "plasma membrane" evidence=ISS
GO:0016021 "integral to membrane" evidence=NAS
GO:0005249 "voltage-gated potassium channel activity" evidence=NAS;TAS
GO:0006813 "potassium ion transport" evidence=IEA;NAS;TAS
GO:0008076 "voltage-gated potassium channel complex" evidence=IEA;TAS
GO:0051260 "protein homooligomerization" evidence=IEA
GO:0055085 "transmembrane transport" evidence=IEA
GO:0030431 "sleep" evidence=IMP
GO:0005251 "delayed rectifier potassium channel activity" evidence=IBA
FB|FBgn0085395 Shawl "Shaw-like" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
WB|WBGene00004793 shw-3 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
WB|WBGene00008819 shw-1 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
WB|WBGene00001202 egl-36 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
UNIPROTKB|D4A377 Kcnc2 "Potassium voltage-gated channel subfamily C member 2" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1PGG2 KCNC2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q96PR1 KCNC2 "Potassium voltage-gated channel subfamily C member 2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
RGD|628829 Kcnc2 "potassium voltage gated channel, Shaw-related subfamily, member 2" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|J9P810 KCNC2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query339
pfam00520194 pfam00520, Ion_trans, Ion transport protein 9e-14
smart00044194 smart00044, CYCc, Adenylyl- / guanylyl cyclase, ca 4e-13
pfam00211184 pfam00211, Guanylate_cyc, Adenylate and Guanylate 4e-10
pfam00520194 pfam00520, Ion_trans, Ion transport protein 4e-08
cd07302177 cd07302, CHD, cyclase homology domain 5e-08
cd07556133 cd07556, Nucleotidyl_cyc_III, Class III nucleotidy 6e-05
>gnl|CDD|215968 pfam00520, Ion_trans, Ion transport protein Back     alignment and domain information 
 Score = 68.5 bits (168), Expect = 9e-14
 Identities = 33/144 (22%), Positives = 61/144 (42%), Gaps = 3/144 (2%)

Query: 93  YVELACNAWFTFELLVRAVVSPNIFQFIRSPVNVIDIIATLSFYTDILLQDKVQQSDILE 152
            ++      FT E+L++ +      ++ RSP N++D +  L     ++L    + S +L 
Sbjct: 1   ILDYVFTVIFTLEMLLKFIALGFKRKYFRSPWNILDFLVVLPSLVSLILFLLGEDSGLLR 60

Query: 153 FFSIIRILRLFKLTRHSPGLKILIHTFKASAK---ELTLLVFFLVLGIVVFASLVYYAER 209
              ++R+LRL +L R  PGL+ L+ +   S K    L LL+  L+    +    ++  E 
Sbjct: 61  VLRLLRLLRLLRLLRRFPGLRTLLQSLGRSLKSLLNLLLLLLLLLFIFAIIGVQLFGGEL 120

Query: 210 LQVSPNIFQFIRSPVNVIDIIATL 233
            +        I    N       L
Sbjct: 121 DKCCDKNENPINGNSNFDSYGEAL 144

This family contains Sodium, Potassium, Calcium ion channels. This family is 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some sub-families (e.g. Na channels) the domain is repeated four times, whereas in others (e.g. K channels) the protein forms as a tetramer in the membrane. A bacterial structure of the protein is known for the last two helices but is not the Pfam family due to it lacking the first four helices. Length = 194
>gnl|CDD|214485 smart00044, CYCc, Adenylyl- / guanylyl cyclase, catalytic domain Back     alignment and domain information
>gnl|CDD|201086 pfam00211, Guanylate_cyc, Adenylate and Guanylate cyclase catalytic domain Back     alignment and domain information
>gnl|CDD|215968 pfam00520, Ion_trans, Ion transport protein Back     alignment and domain information
>gnl|CDD|143636 cd07302, CHD, cyclase homology domain Back     alignment and domain information
>gnl|CDD|143637 cd07556, Nucleotidyl_cyc_III, Class III nucleotidyl cyclases Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 339
KOG3713|consensus477 100.0
KOG1545|consensus507 100.0
KOG4390|consensus 632 99.97
KOG3713|consensus477 99.95
KOG1545|consensus507 99.94
KOG1419|consensus 654 99.88
KOG4390|consensus 632 99.88
KOG2302|consensus 1956 99.73
KOG1419|consensus 654 99.6
KOG2301|consensus 1592 99.51
PLN03192 823 Voltage-dependent potassium channel; Provisional 99.41
PF00520200 Ion_trans: Ion transport protein calcium channel s 99.31
KOG1420|consensus 1103 99.31
KOG2301|consensus 1592 99.21
KOG2302|consensus 1956 99.08
KOG0498|consensus 727 98.74
KOG0501|consensus 971 98.45
PF00520200 Ion_trans: Ion transport protein calcium channel s 98.31
PLN03223 1634 Polycystin cation channel protein; Provisional 97.58
KOG0500|consensus 536 97.53
PF08016425 PKD_channel: Polycystin cation channel; InterPro: 97.21
PRK10537 393 voltage-gated potassium channel; Provisional 97.19
KOG3599|consensus798 97.09
PF0788579 Ion_trans_2: Ion channel; InterPro: IPR013099 This 97.07
PLN03192 823 Voltage-dependent potassium channel; Provisional 96.87
PRK10537 393 voltage-gated potassium channel; Provisional 96.06
PLN03223 1634 Polycystin cation channel protein; Provisional 95.98
PF08016425 PKD_channel: Polycystin cation channel; InterPro: 95.37
KOG0499|consensus 815 94.54
KOG1023|consensus484 93.62
KOG4404|consensus 350 93.56
KOG1420|consensus 1103 93.48
KOG4171|consensus671 92.75
KOG1418|consensus 433 91.25
KOG0498|consensus 727 90.34
TIGR00870743 trp transient-receptor-potential calcium channel p 90.16
KOG3599|consensus 798 88.06
PF0788579 Ion_trans_2: Ion channel; InterPro: IPR013099 This 87.19
KOG3193|consensus 1087 86.21
>KOG3713|consensus Back     alignment and domain information 
Probab=100.00  E-value=1.7e-44  Score=343.08  Aligned_cols=257  Identities=33%  Similarity=0.612  Sum_probs=230.7

Q ss_pred             HHhhccccceeeccccchhhhHhhHhHHHHHhhhheeeEEecccCCccccccCccccccCCCCcccccccccCCCCchhh
Q psy15554         13 DRIIKGYDVYKVETIGDAYMVILAVTSVFFICVSVVSFALKTHPDMRVPTIRNSSFFISLDNSTAWVLHKEKTDPHAAFF   92 (339)
Q Consensus        13 ~~~~~~~~~~~~~~~~s~~~~~~~~~i~~~I~ls~i~~~l~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~   92 (339)
                      -+.+++.+.++|+|+||.+||+|+..+.++|++|++.+|++|+|++|.++.++.....        +.++...+.++.+.
T Consensus       172 ~~~r~rlW~~~E~P~SS~~Ak~fa~~Sv~FVlvSiv~lcL~T~pe~q~~~~~~~~~~~--------~~~~~~~~~~p~l~  243 (477)
T KOG3713|consen  172 GRLRRRLWALLENPGSSLAAKVFAVLSVLFVLVSIVGLCLGTLPEFQVPDKQGEGLLV--------NVEKIESEPHPILT  243 (477)
T ss_pred             hhHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHHcCCHhhhchhhccccccc--------cccccCCCCCCchH
Confidence            3577788889999999999999999999999999999999999999987654221111        22444667788899


Q ss_pred             hhhhHHHHHHHHHHHHhhhccCcchhhccccccchhhhhhhHHHHHHHHcc--------ccccchhHHHHHhhhhhhccc
Q psy15554         93 YVELACNAWFTFELLVRAVVSPNIFQFIRSPVNVIDIIATLSFYTDILLQD--------KVQQSDILEFFSIIRILRLFK  164 (339)
Q Consensus        93 ~ie~~~~~iF~~E~~lrl~~a~~~~~y~~~~~niiDl~~ilp~~v~~~~~~--------~~~~~~~lr~lRllRllRilr  164 (339)
                      ++|.+|.++||+||++|+..+|+|.+|++++.|+||+++++|+|+++.+..        ..++...+|++|++|++|++|
T Consensus       244 ~vE~vCi~WFT~E~llR~~~~P~k~~F~k~pLNIIDllAIlPFYielll~~~~~~~~~~l~~~~~vvrvlR~lRI~RI~K  323 (477)
T KOG3713|consen  244 YVETVCIAWFTFEYLLRFLVAPNKLEFFKSPLNIIDLLAILPFYLELLLTLFGGESLKELENAGLVVRVLRVLRILRIFK  323 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCchHHHHHhCcchHHHHHHHHHHHHHHHHHHhccchHHHHhhhhhhHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999977763        133447899999999999999


Q ss_pred             ccccCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcceeecCccceeeeEEeccc--chhhhhc
Q psy15554        165 LTRHSPGLKILIHTFKASAKELTLLVFFLVLGIVVFASLVYYAERLQVSPNIFQFIRSPVNVIDIIATLSF--YTDILLQ  242 (339)
Q Consensus       165 l~r~~~~l~~l~~tl~~s~~~l~~l~~~~~i~v~iFa~~iy~~er~~~~~~~~~f~~~~~al~~~i~tltt--Ygdi~p~  242 (339)
                      |.|++.|+|.++.|++++.++++.+++++.+++.+||..+||+|+  ..|++ .|.++|.++||+++||||  |||++|.
T Consensus       324 LaRhS~GLr~lg~Tlr~S~~ElglLllfL~~GI~iFStlvY~~Ek--~~~~~-~FtSIPa~~WWaiVTMTTVGYGDm~P~  400 (477)
T KOG3713|consen  324 LARHSTGLRTLGLTLRRSYRELGLLLLFLAVGIVIFSTLVYFAEK--DEPDT-KFTSIPAGFWWAVVTMTTVGYGDMVPV  400 (477)
T ss_pred             HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--cCCCC-CCccccchhheeeEEEeeecccCcccc
Confidence            999999999999999999999999999999999999999999999  66766 699999999999999999  9999999


Q ss_pred             ccccchhhhhHHHHHHHhhhcccccCchHHHHHHHHHHHHHHHHH
Q psy15554        243 DKVQQSDILEFFSIIRILRLFKLTRHSPGLKILIHTFKASAKELT  287 (339)
Q Consensus       243 t~~g~~~~l~~lrilri~ri~kL~r~~~~l~~L~~~~~~~~~~l~  287 (339)
                      |..|+  ++...+++.+.-++.|     ++.++.+.+.+..++..
T Consensus       401 T~~Gk--lvas~cil~GVLvlAl-----PItiIv~nF~~~y~~~k  438 (477)
T KOG3713|consen  401 TVLGK--LVASLCILCGVLVLAL-----PITIIVNNFSMYYSELK  438 (477)
T ss_pred             ccchH--HHHHHHHHHhHHHhhc-----chHhHhhhHHHHHHHHH
Confidence            99998  9999999999999999     99999999988887754

>KOG1545|consensus Back     alignment and domain information
>KOG4390|consensus Back     alignment and domain information
>KOG3713|consensus Back     alignment and domain information
>KOG1545|consensus Back     alignment and domain information
>KOG1419|consensus Back     alignment and domain information
>KOG4390|consensus Back     alignment and domain information
>KOG2302|consensus Back     alignment and domain information
>KOG1419|consensus Back     alignment and domain information
>KOG2301|consensus Back     alignment and domain information
>PLN03192 Voltage-dependent potassium channel; Provisional Back     alignment and domain information
>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins Back     alignment and domain information
>KOG1420|consensus Back     alignment and domain information
>KOG2301|consensus Back     alignment and domain information
>KOG2302|consensus Back     alignment and domain information
>KOG0498|consensus Back     alignment and domain information
>KOG0501|consensus Back     alignment and domain information
>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins Back     alignment and domain information
>PLN03223 Polycystin cation channel protein; Provisional Back     alignment and domain information
>KOG0500|consensus Back     alignment and domain information
>PF08016 PKD_channel: Polycystin cation channel; InterPro: IPR013122 Polycystic kidney diseases (PKD) are disorders characterised by large numbers of cysts distributed throughout grossly-enlarged kidneys Back     alignment and domain information
>PRK10537 voltage-gated potassium channel; Provisional Back     alignment and domain information
>KOG3599|consensus Back     alignment and domain information
>PF07885 Ion_trans_2: Ion channel; InterPro: IPR013099 This entry includes the two membrane helix type ion channels found in bacteria [] Back     alignment and domain information
>PLN03192 Voltage-dependent potassium channel; Provisional Back     alignment and domain information
>PRK10537 voltage-gated potassium channel; Provisional Back     alignment and domain information
>PLN03223 Polycystin cation channel protein; Provisional Back     alignment and domain information
>PF08016 PKD_channel: Polycystin cation channel; InterPro: IPR013122 Polycystic kidney diseases (PKD) are disorders characterised by large numbers of cysts distributed throughout grossly-enlarged kidneys Back     alignment and domain information
>KOG0499|consensus Back     alignment and domain information
>KOG1023|consensus Back     alignment and domain information
>KOG4404|consensus Back     alignment and domain information
>KOG1420|consensus Back     alignment and domain information
>KOG4171|consensus Back     alignment and domain information
>KOG1418|consensus Back     alignment and domain information
>KOG0498|consensus Back     alignment and domain information
>TIGR00870 trp transient-receptor-potential calcium channel protein Back     alignment and domain information
>KOG3599|consensus Back     alignment and domain information
>PF07885 Ion_trans_2: Ion channel; InterPro: IPR013099 This entry includes the two membrane helix type ion channels found in bacteria [] Back     alignment and domain information
>KOG3193|consensus Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query339
2r9r_B514 Shaker Family Voltage Dependent Potassium Channel ( 8e-18
2r9r_B 514 Shaker Family Voltage Dependent Potassium Channel ( 2e-10
3lnm_B514 F233w Mutant Of The Kv2.1 Paddle-Kv1.2 Chimera Chan 3e-17
3lnm_B 514 F233w Mutant Of The Kv2.1 Paddle-Kv1.2 Chimera Chan 2e-10
2a79_B499 Mammalian Shaker Kv1.2 Potassium Channel- Beta Subu 3e-15
2a79_B 499 Mammalian Shaker Kv1.2 Potassium Channel- Beta Subu 6e-08
3lut_B499 A Structural Model For The Full-Length Shaker Potas 3e-15
3lut_B 499 A Structural Model For The Full-Length Shaker Potas 6e-08
3uvj_A225 Crystal Structure Of The Catalytic Domain Of The He 6e-05
2wz1_A219 Structure Of The Catalytic Domain Of Human Soluble 4e-04
3et6_A190 The Crystal Structure Of The Catalytic Domain Of A 6e-04
3et6_B190 The Crystal Structure Of The Catalytic Domain Of A 6e-04
>pdb|2R9R|B Chain B, Shaker Family Voltage Dependent Potassium Channel (Kv1.2-Kv2.1 Paddle Chimera Channel) In Association With Beta Subunit Length = 514 Back     alignment and structure 
Iteration: 1

 Score = 87.8 bits (216), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 52/131 (39%), Positives = 72/131 (54%), Gaps = 10/131 (7%)
Query: 85  TDPHAAFFYVELACNAWFTFELLVRAVVSPNIFQFIRSPVNVIDIIATLSFYTDILLQDK 144
           TDP   FF VE  C  WF+FE LVR    P+   F  + +N+IDI+A + +Y  I L + 
Sbjct: 238 TDP---FFIVETLCIIWFSFEFLVRFFACPSKAGFFTNIMNIIDIVAIIPYYVTIFLTES 294
Query: 145 VQQ-------SDILEFFSIIRILRLFKLTRHSPGLKILIHTFKASAKELTXXXXXXXXXX 197
            +          +++ F I+RILR+FKL+RHS GL+IL  T KAS +EL           
Sbjct: 295 NKSVLQFQNVRRVVQIFRIMRILRIFKLSRHSKGLQILGQTLKASMRELGLLIFFLFIGV 354
Query: 198 XXXASLVYYAE 208
              +S VY+AE
Sbjct: 355 ILFSSAVYFAE 365
>pdb|2R9R|B Chain B, Shaker Family Voltage Dependent Potassium Channel (Kv1.2-Kv2.1 Paddle Chimera Channel) In Association With Beta Subunit Length = 514 Back     alignment and structure
>pdb|3LNM|B Chain B, F233w Mutant Of The Kv2.1 Paddle-Kv1.2 Chimera Channel Length = 514 Back     alignment and structure
>pdb|3LNM|B Chain B, F233w Mutant Of The Kv2.1 Paddle-Kv1.2 Chimera Channel Length = 514 Back     alignment and structure
>pdb|2A79|B Chain B, Mammalian Shaker Kv1.2 Potassium Channel- Beta Subunit Complex Length = 499 Back     alignment and structure
>pdb|2A79|B Chain B, Mammalian Shaker Kv1.2 Potassium Channel- Beta Subunit Complex Length = 499 Back     alignment and structure
>pdb|3LUT|B Chain B, A Structural Model For The Full-Length Shaker Potassium Channel Kv1.2 Length = 499 Back     alignment and structure
>pdb|3LUT|B Chain B, A Structural Model For The Full-Length Shaker Potassium Channel Kv1.2 Length = 499 Back     alignment and structure
>pdb|3UVJ|A Chain A, Crystal Structure Of The Catalytic Domain Of The Heterodimeric Human Soluble Guanylate Cyclase 1. Length = 225 Back     alignment and structure
>pdb|2WZ1|A Chain A, Structure Of The Catalytic Domain Of Human Soluble Guanylate Cyclase 1 Beta 3. Length = 219 Back     alignment and structure
>pdb|3ET6|A Chain A, The Crystal Structure Of The Catalytic Domain Of A Eukaryotic Guanylate Cyclase Length = 190 Back     alignment and structure
>pdb|3ET6|B Chain B, The Crystal Structure Of The Catalytic Domain Of A Eukaryotic Guanylate Cyclase Length = 190 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query339
2r9r_B514 Paddle chimera voltage gated potassium channel KV; 3e-49
2r9r_B 514 Paddle chimera voltage gated potassium channel KV; 2e-29
3beh_A355 MLL3241 protein; transmembrane protein, membrane p 2e-34
3beh_A 355 MLL3241 protein; transmembrane protein, membrane p 9e-25
1orq_C223 Potassium channel; voltage-dependent, KVAP, FAB co 4e-21
1orq_C223 Potassium channel; voltage-dependent, KVAP, FAB co 1e-13
3uvj_A225 Guanylate cyclase soluble subunit alpha-3; nitric 2e-17
1yk9_A204 Adenylate cyclase; beta-alpha-beta sandwich, struc 2e-16
2wz1_A219 Guanylate cyclase soluble subunit beta-1; lyase, G 1e-14
1azs_A220 VC1; complex (lyase/hydrolase), hydrolase, signal 3e-14
1ab8_A220 Adenylyl cyclase; lyase, complex (transferase-inhi 3e-14
3et6_A190 Soluble guanylyl cyclase beta; guanylate cyclase, 7e-13
3pjs_K166 KCSA, voltage-gated potassium channel; ION channel 3e-09
3pjs_K166 KCSA, voltage-gated potassium channel; ION channel 5e-09
2a9h_A155 Voltage-gated potassium channel; potassium channel 2e-08
2a9h_A155 Voltage-gated potassium channel; potassium channel 2e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-08
1fx2_A235 Receptor-type adenylate cyclase gresag 4.1; CAMP, 2e-08
2ih3_C122 Voltage-gated potassium channel; ION channel D-ami 1e-07
2ih3_C122 Voltage-gated potassium channel; ION channel D-ami 2e-07
1y10_A407 Hypothetical protein RV1264/MT1302; adenylyl cycla 3e-07
2kyh_A147 KVAP, voltage-gated potassium channel; ION channel 5e-07
2kyh_A147 KVAP, voltage-gated potassium channel; ION channel 4e-04
1ors_C132 Potassium channel; voltage-dependent, voltage sens 5e-06
4dxw_A229 Navrh, ION transport protein; tetrameric, voltage- 2e-05
3rvy_A285 ION transport protein; tetrameric ION channel, vol 2e-04
3eff_K139 Voltage-gated potassium channel; FULL length KCSA, 3e-04
3eff_K139 Voltage-gated potassium channel; FULL length KCSA, 5e-04
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B* Length = 514 Back     alignment and structure
 Score =  171 bits (434), Expect = 3e-49
 Identities = 72/195 (36%), Positives = 111/195 (56%), Gaps = 9/195 (4%)

Query: 34  ILAVTSVFFICVSVVSFALKTHPDMRVPTIRNSSFFISLDNST-AWVLHKEKTDPHAAFF 92
           I+A+ SV  I +S+VSF L+T P  R          ++    + + + +++ T     FF
Sbjct: 183 IIAIVSVMVILISIVSFCLETLPIFRDENEDMHGGGVTFHTYSQSTIGYQQSTSFTDPFF 242

Query: 93  YVELACNAWFTFELLVRAVVSPNIFQFIRSPVNVIDIIATLSFYTDILLQDKVQQSD--- 149
            VE  C  WF+FE LVR    P+   F  + +N+IDI+A + +Y  I L +  +      
Sbjct: 243 IVETLCIIWFSFEFLVRFFACPSKAGFFTNIMNIIDIVAIIPYYVTIFLTESNKSVLQFQ 302

Query: 150 ----ILEFFSIIRILRLFKLTRHSPGLKILIHTFKASAKELTLLVFFLVLGIVVFASLVY 205
               +++ F I+RILR+FKL+RHS GL+IL  T KAS +EL LL+FFL +G+++F+S VY
Sbjct: 303 NVRRVVQIFRIMRILRIFKLSRHSKGLQILGQTLKASMRELGLLIFFLFIGVILFSSAVY 362

Query: 206 YAERLQVSPNIFQFI 220
           +AE      + F  I
Sbjct: 363 FAEA-DERDSQFPSI 376
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B* Length = 514 Back     alignment and structure
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A* Length = 355 Back     alignment and structure
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A* Length = 355 Back     alignment and structure
>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A Length = 223 Back     alignment and structure
>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A Length = 223 Back     alignment and structure
>3uvj_A Guanylate cyclase soluble subunit alpha-3; nitric oxide, structural genomics, structural genomics conso SGC, CGMP biosynthesis; 2.08A {Homo sapiens} Length = 225 Back     alignment and structure
>1yk9_A Adenylate cyclase; beta-alpha-beta sandwich, structural genomics, PSI, protein structure initiative; 2.70A {Mycobacterium tuberculosis} Length = 204 Back     alignment and structure
>2wz1_A Guanylate cyclase soluble subunit beta-1; lyase, GUCY1, metal-binding, CGMP biosynthesis, nucleotide-B cyclase, GUCY1B3, GTP-binding; 1.63A {Homo sapiens} PDB: 3uvj_B Length = 219 Back     alignment and structure
>1azs_A VC1; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Canis lupus familiaris} SCOP: d.58.29.1 PDB: 1cs4_A* 1u0h_A* 2gvd_A* 2gvz_A* 3c14_A* 3c15_A* 3c16_A* 3e8a_A* 3g82_A* 3maa_A* 1cul_A* 1cjk_A* 1cju_A* 1cjv_A* 1cjt_A* 1tl7_A* Length = 220 Back     alignment and structure
>1ab8_A Adenylyl cyclase; lyase, complex (transferase-inhibitor); HET: FOK; 2.20A {Rattus norvegicus} SCOP: d.58.29.1 PDB: 1azs_B* 1cjk_B* 1cjt_B* 1cju_B* 1cjv_B* 1cs4_B* 1tl7_B* 1u0h_B* 2gvd_B* 2gvz_B* 3c14_B* 3c15_B* 3c16_B* 3e8a_B* 3g82_B* 3maa_B* 1cul_B* Length = 220 Back     alignment and structure
>3et6_A Soluble guanylyl cyclase beta; guanylate cyclase, dimethylarsenic, lyase, membrane, transmembrane; 2.55A {Chlamydomonas reinhardtii} PDB: 3et6_B Length = 190 Back     alignment and structure
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A Length = 166 Back     alignment and structure
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A Length = 166 Back     alignment and structure
>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1 Length = 155 Back     alignment and structure
>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1 Length = 155 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1fx2_A Receptor-type adenylate cyclase gresag 4.1; CAMP, trypanosomes, adenylyl cyclases, monomer-dimer, catalysis, lyase; 1.46A {Trypanosoma brucei} SCOP: d.58.29.1 PDB: 1fx4_A Length = 235 Back     alignment and structure
>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ... Length = 122 Back     alignment and structure
>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ... Length = 122 Back     alignment and structure
>1y10_A Hypothetical protein RV1264/MT1302; adenylyl cyclase fold, lyase; HET: 1PE; 2.30A {Mycobacterium tuberculosis} PDB: 1y11_A* Length = 407 Back     alignment and structure
>2kyh_A KVAP, voltage-gated potassium channel; ION channel, membrane protein; NMR {Aeropyrum pernix} Length = 147 Back     alignment and structure
>2kyh_A KVAP, voltage-gated potassium channel; ION channel, membrane protein; NMR {Aeropyrum pernix} Length = 147 Back     alignment and structure
>1ors_C Potassium channel; voltage-dependent, voltage sensor, KVAP, FAB complex, membrane protein; 1.90A {Aeropyrum pernix} SCOP: f.14.1.1 Length = 132 Back     alignment and structure
>4dxw_A Navrh, ION transport protein; tetrameric, voltage-gated sodium channel, sodium selective, gated ION channel; HET: BNG PX4; 3.05A {Alpha proteobacterium HIMB114} Length = 229 Back     alignment and structure
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 3rw0_A* Length = 285 Back     alignment and structure
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans} Length = 139 Back     alignment and structure
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans} Length = 139 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query339
2r9r_B514 Paddle chimera voltage gated potassium channel KV; 99.96
1orq_C223 Potassium channel; voltage-dependent, KVAP, FAB co 99.91
3beh_A355 MLL3241 protein; transmembrane protein, membrane p 99.9
3rvy_A285 ION transport protein; tetrameric ION channel, vol 99.88
4dxw_A229 Navrh, ION transport protein; tetrameric, voltage- 99.86
1ors_C132 Potassium channel; voltage-dependent, voltage sens 99.82
2r9r_B 514 Paddle chimera voltage gated potassium channel KV; 99.66
2kyh_A147 KVAP, voltage-gated potassium channel; ION channel 99.59
4dxw_A229 Navrh, ION transport protein; tetrameric, voltage- 99.5
3rvy_A285 ION transport protein; tetrameric ION channel, vol 99.49
1orq_C223 Potassium channel; voltage-dependent, KVAP, FAB co 99.46
3beh_A 355 MLL3241 protein; transmembrane protein, membrane p 99.46
2a9h_A155 Voltage-gated potassium channel; potassium channel 99.35
2ih3_C122 Voltage-gated potassium channel; ION channel D-ami 99.2
2a9h_A155 Voltage-gated potassium channel; potassium channel 99.07
1ors_C132 Potassium channel; voltage-dependent, voltage sens 99.06
2ih3_C122 Voltage-gated potassium channel; ION channel D-ami 98.87
2k1e_A103 Water soluble analogue of potassium channel, KCSA; 98.45
2kyh_A147 KVAP, voltage-gated potassium channel; ION channel 98.2
3ukm_A280 Potassium channel subfamily K member 1; membrane p 98.11
3um7_A309 Potassium channel subfamily K member 4; potassium 98.1
3eff_K139 Voltage-gated potassium channel; FULL length KCSA, 98.06
2k1e_A103 Water soluble analogue of potassium channel, KCSA; 97.89
4h33_A137 LMO2059 protein; bilayers, KVLM, lipidic cubic pha 97.84
1p7b_A 333 Integral membrane channel and cytosolic domains; t 97.46
2q67_A114 Potassium channel protein; inverted teepee, helix 97.38
1p7b_A 333 Integral membrane channel and cytosolic domains; t 97.38
3ouf_A97 Potassium channel protein; ION channel, membrane, 97.26
3eff_K139 Voltage-gated potassium channel; FULL length KCSA, 97.25
1xl4_A 301 Inward rectifier potassium channel; integral membr 97.2
3ldc_A82 Calcium-gated potassium channel MTHK; transmembran 97.08
3vou_A148 ION transport 2 domain protein, voltage-gated SOD 97.06
2qks_A 321 KIR3.1-prokaryotic KIR channel chimera; G-protein 97.04
1xl4_A 301 Inward rectifier potassium channel; integral membr 96.91
4h33_A137 LMO2059 protein; bilayers, KVLM, lipidic cubic pha 96.83
3pjs_K166 KCSA, voltage-gated potassium channel; ION channel 96.67
2qks_A 321 KIR3.1-prokaryotic KIR channel chimera; G-protein 96.41
2q67_A114 Potassium channel protein; inverted teepee, helix 95.5
4gx0_A 565 TRKA domain protein; membrane protein, ION channel 95.42
3pjs_K166 KCSA, voltage-gated potassium channel; ION channel 94.88
3vou_A148 ION transport 2 domain protein, voltage-gated SOD 94.16
3sya_A 340 G protein-activated inward rectifier potassium CH; 94.13
3ukm_A280 Potassium channel subfamily K member 1; membrane p 94.13
3um7_A309 Potassium channel subfamily K member 4; potassium 93.94
1lnq_A 336 MTHK channels, potassium channel related protein; 93.41
3ouf_A97 Potassium channel protein; ION channel, membrane, 92.98
3ldc_A82 Calcium-gated potassium channel MTHK; transmembran 92.3
3spc_A 343 Inward-rectifier K+ channel KIR2.2; PIP, membrane 90.79
2lcm_A28 Voltage-dependent N-type calcium channel subunit; 90.43
1lnq_A 336 MTHK channels, potassium channel related protein; 89.13
4gx0_A 565 TRKA domain protein; membrane protein, ION channel 87.6
3spc_A 343 Inward-rectifier K+ channel KIR2.2; PIP, membrane 86.84
3sya_A 340 G protein-activated inward rectifier potassium CH; 84.33
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B* Back     alignment and structure
Probab=99.96  E-value=1.3e-30  Score=259.36  Aligned_cols=255  Identities=32%  Similarity=0.493  Sum_probs=200.4

Q ss_pred             hhccccceeeccccchhhhHhhHhHHHHHhhhheeeEEecccCCccccccCcccc---ccCCCCcccccccccCCCCchh
Q psy15554         15 IIKGYDVYKVETIGDAYMVILAVTSVFFICVSVVSFALKTHPDMRVPTIRNSSFF---ISLDNSTAWVLHKEKTDPHAAF   91 (339)
Q Consensus        15 ~~~~~~~~~~~~~~s~~~~~~~~~i~~~I~ls~i~~~l~t~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l   91 (339)
                      +++..+.+.|+|.+|.++++|+.+++++|++|++.+++||.|+++.+.....+..   ...++++  ....+.......+
T Consensus       164 ~r~~lw~l~e~p~sS~~a~~f~~~~i~~Illsii~~~leT~p~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l  241 (514)
T 2r9r_B          164 FQRQVWLLFEYPESSGPARIIAIVSVMVILISIVSFCLETLPIFRDENEDMHGGGVTFHTYSQST--IGYQQSTSFTDPF  241 (514)
T ss_dssp             SHHHHHHTTTCTTSCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHTCSTTTTSCCCCHHHHHHHH--HSSCCCTTCCCHH
T ss_pred             HHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHhhhhcccccccccccccccccccccccccc--ccccccchhhhHH
Confidence            4455556678999999999999999999999999999999887643211000000   0000000  0111234467789


Q ss_pred             hhhhhHHHHHHHHHHHHhhhccCcchhhccccccchhhhhhhHHHHHHHHccc-------cccchhHHHHHhhhhhhccc
Q psy15554         92 FYVELACNAWFTFELLVRAVVSPNIFQFIRSPVNVIDIIATLSFYTDILLQDK-------VQQSDILEFFSIIRILRLFK  164 (339)
Q Consensus        92 ~~ie~~~~~iF~~E~~lrl~~a~~~~~y~~~~~niiDl~~ilp~~v~~~~~~~-------~~~~~~lr~lRllRllRilr  164 (339)
                      ..+|.+|+++|++|+++|+++++.|.+|++++||++|+++++|+++.+.....       ......+|++|++|++|++|
T Consensus       242 ~~ie~i~~~iFtiE~ilR~~~~~~k~~Y~ks~wniiDli~iip~~i~l~~~~~~~~~~~~~~~~~~lrvlRllRvlRilk  321 (514)
T 2r9r_B          242 FIVETLCIIWFSFEFLVRFFACPSKAGFFTNIMNIIDIVAIIPYYVTIFLTESNKSVLQFQNVRRVVQIFRIMRILRIFK  321 (514)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHSSCSSSSTTSHHHHHHHHTTHHHHHHHHHHHTSCSHHHHHTTHHHHHHHHHHGGGGGGG
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCcHHHHHhchhHHHHHHHHHHHHHHHHhhhccccchhhhhHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999988776421       11245789999999999999


Q ss_pred             ccccCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcceeecCccceeeeEEeccc--chhhhhc
Q psy15554        165 LTRHSPGLKILIHTFKASAKELTLLVFFLVLGIVVFASLVYYAERLQVSPNIFQFIRSPVNVIDIIATLSF--YTDILLQ  242 (339)
Q Consensus       165 l~r~~~~l~~l~~tl~~s~~~l~~l~~~~~i~v~iFa~~iy~~er~~~~~~~~~f~~~~~al~~~i~tltt--Ygdi~p~  242 (339)
                      +.|+.++++.+..++..+.+++..+++++++++.+||+.+|+.|+  ..++. .|.+.++++||+++|+||  |||+.|.
T Consensus       322 L~r~~~~l~~l~~tl~~s~~~l~~ll~~l~i~~~if~~~~~~~e~--~~~~~-~F~s~~~a~y~~~vT~TTvGYGDi~P~  398 (514)
T 2r9r_B          322 LSRHSKGLQILGQTLKASMRELGLLIFFLFIGVILFSSAVYFAEA--DERDS-QFPSIPDAFWWAVVSMTTVGYGDMVPT  398 (514)
T ss_dssp             GGGSCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHT--TCTTC-SCSSHHHHHHHHHHHHTTCCCSSSCCC
T ss_pred             HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhheeec--cCCCc-cccchhhhhheeeeEEEecccCCCCCC
Confidence            999999999999999999999998888888889999999988887  33444 688999999999999999  9999999


Q ss_pred             ccccchhhhhHHHHHHHhhhcccccCchHHHHHHHHHHH
Q psy15554        243 DKVQQSDILEFFSIIRILRLFKLTRHSPGLKILIHTFKA  281 (339)
Q Consensus       243 t~~g~~~~l~~lrilri~ri~kL~r~~~~l~~L~~~~~~  281 (339)
                      +..|+  ++.++.++-++-++.+     .+.++...+.+
T Consensus       399 t~~gr--~f~~~~~l~G~~~l~l-----~iavI~~~f~~  430 (514)
T 2r9r_B          399 TIGGK--IVGSLCAIAGVLTIAL-----PVPVIVSNFNY  430 (514)
T ss_dssp             SHHHH--HHHHHHHHHHHHHHHT-----THHHHHHHHHH
T ss_pred             CcchH--hhehhHHHHHHHHHHH-----HHHHHHHHHHH
Confidence            98887  6777777777777766     34555554444
>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A Back     alignment and structure
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A* Back     alignment and structure
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A* Back     alignment and structure
>4dxw_A Navrh, ION transport protein; tetrameric, voltage-gated sodium channel, sodium selective, gated ION channel; HET: BNG PX4; 3.05A {Alpha proteobacterium HIMB114} Back     alignment and structure
>1ors_C Potassium channel; voltage-dependent, voltage sensor, KVAP, FAB complex, membrane protein; 1.90A {Aeropyrum pernix} SCOP: f.14.1.1 Back     alignment and structure
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B* Back     alignment and structure
>2kyh_A KVAP, voltage-gated potassium channel; ION channel, membrane protein; NMR {Aeropyrum pernix} Back     alignment and structure
>4dxw_A Navrh, ION transport protein; tetrameric, voltage-gated sodium channel, sodium selective, gated ION channel; HET: BNG PX4; 3.05A {Alpha proteobacterium HIMB114} Back     alignment and structure
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A* Back     alignment and structure
>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A Back     alignment and structure
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A* Back     alignment and structure
>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1 Back     alignment and structure
>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ... Back     alignment and structure
>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1 Back     alignment and structure
>1ors_C Potassium channel; voltage-dependent, voltage sensor, KVAP, FAB complex, membrane protein; 1.90A {Aeropyrum pernix} SCOP: f.14.1.1 Back     alignment and structure
>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ... Back     alignment and structure
>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A Back     alignment and structure
>2kyh_A KVAP, voltage-gated potassium channel; ION channel, membrane protein; NMR {Aeropyrum pernix} Back     alignment and structure
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens} Back     alignment and structure
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens} Back     alignment and structure
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans} Back     alignment and structure
>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A Back     alignment and structure
>4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A Back     alignment and structure
>1p7b_A Integral membrane channel and cytosolic domains; transmembrane helices, ION conduction, immunoglobulin fold, assembly; 3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16 f.14.1.1 PDB: 2wll_B* 2wll_A* Back     alignment and structure
>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A Back     alignment and structure
>1p7b_A Integral membrane channel and cytosolic domains; transmembrane helices, ION conduction, immunoglobulin fold, assembly; 3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16 f.14.1.1 PDB: 2wll_B* 2wll_A* Back     alignment and structure
>3ouf_A Potassium channel protein; ION channel, membrane, membrane protein; 1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A 3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A 3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A Back     alignment and structure
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans} Back     alignment and structure
>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION channel, inwardly rectifying channel, metal transport; 2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A* 2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A* 2x6a_A* Back     alignment and structure
>3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel, open conformation, IO transport; 1.45A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3lde_A 4hyo_A 4hz3_D 3r65_A 3ous_A 3ldd_A Back     alignment and structure
>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis} Back     alignment and structure
>2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward rectifier, potassium channel selectivity filter, metal transport; HET: BNG; 2.20A {Burkholderia xenovorans} Back     alignment and structure
>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION channel, inwardly rectifying channel, metal transport; 2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A* 2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A* 2x6a_A* Back     alignment and structure
>4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A Back     alignment and structure
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A Back     alignment and structure
>2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward rectifier, potassium channel selectivity filter, metal transport; HET: BNG; 2.20A {Burkholderia xenovorans} Back     alignment and structure
>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A Back     alignment and structure
>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A* Back     alignment and structure
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A Back     alignment and structure
>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis} Back     alignment and structure
>3sya_A G protein-activated inward rectifier potassium CH; ION channel, potassium channel, inward rectification, sodium PIP2 binding, G protein binding; HET: PIO; 2.98A {Mus musculus} PDB: 3syo_A 3syc_A 3syp_A 3syq_A* Back     alignment and structure
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens} Back     alignment and structure
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens} Back     alignment and structure
>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A Back     alignment and structure
>3ouf_A Potassium channel protein; ION channel, membrane, membrane protein; 1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A 3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A 3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A Back     alignment and structure
>3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel, open conformation, IO transport; 1.45A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3lde_A 4hyo_A 4hz3_D 3r65_A 3ous_A 3ldd_A Back     alignment and structure
>3spc_A Inward-rectifier K+ channel KIR2.2; PIP, membrane protein, lipid, receptor, metal transport; HET: P8P; 2.45A {Gallus gallus} PDB: 3jyc_A* 3spi_A* 3sph_A* 3spj_A 3spg_A* Back     alignment and structure
>2lcm_A Voltage-dependent N-type calcium channel subunit; voltage sensor peptide, membrane protein; NMR {Homo sapiens} Back     alignment and structure
>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A Back     alignment and structure
>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A* Back     alignment and structure
>3spc_A Inward-rectifier K+ channel KIR2.2; PIP, membrane protein, lipid, receptor, metal transport; HET: P8P; 2.45A {Gallus gallus} PDB: 3jyc_A* 3spi_A* 3sph_A* 3spj_A 3spg_A* Back     alignment and structure
>3sya_A G protein-activated inward rectifier potassium CH; ION channel, potassium channel, inward rectification, sodium PIP2 binding, G protein binding; HET: PIO; 2.98A {Mus musculus} PDB: 3syo_A 3syc_A 3syp_A 3syq_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 339
d1orsc_132 f.14.1.1 (C:) Potassium channel KVAP {Archaeon Aer 6e-06
d1orsc_132 f.14.1.1 (C:) Potassium channel KVAP {Archaeon Aer 9e-04
d1fx2a_235 d.58.29.1 (A:) Receptor-type monomeric adenylyl cy 3e-04
>d1orsc_ f.14.1.1 (C:) Potassium channel KVAP {Archaeon Aeropyrum pernix [TaxId: 56636]} Length = 132 Back     information, alignment and structure

class: Membrane and cell surface proteins and peptides
fold: Voltage-gated potassium channels
superfamily: Voltage-gated potassium channels
family: Voltage-gated potassium channels
domain: Potassium channel KVAP
species: Archaeon Aeropyrum pernix [TaxId: 56636]

 Score = 43.0 bits (101), Expect = 6e-06
 Identities = 15/106 (14%), Positives = 37/106 (34%), Gaps = 5/106 (4%)

Query: 81  HKEKTDPHAAFFYVELACNAWFTFELLVRAVVSPNIFQFIRSPVNVIDIIATLSFYTDIL 140
            +   +     + V+L        +   RA  S +   +++    + +I A +      L
Sbjct: 29  MQLSGEYLVRLYLVDLILVIILWADYAYRAYKSGDPAGYVKK--TLYEIPALVPAGLLAL 86

Query: 141 LQDKVQQSDILEFFSIIRILRLFKLTRHSPGLKILIHTFKASAKEL 186
           ++        L  F ++R+LR  ++          +     +A +L
Sbjct: 87  IE---GHLAGLGLFRLVRLLRFLRILLIISRGSKFLSAIADAADKL 129
>d1orsc_ f.14.1.1 (C:) Potassium channel KVAP {Archaeon Aeropyrum pernix [TaxId: 56636]} Length = 132 Back     information, alignment and structure
>d1fx2a_ d.58.29.1 (A:) Receptor-type monomeric adenylyl cyclase {Trypanosome (Trypanosoma brucei), different isoform [TaxId: 5691]} Length = 235 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query339
d1orsc_132 Potassium channel KVAP {Archaeon Aeropyrum pernix 99.74
d2h8pc157 Potassium channel protein {Streptomyces coelicolor 99.49
d1r3jc_103 Potassium channel protein {Streptomyces coelicolor 98.77
d1orsc_132 Potassium channel KVAP {Archaeon Aeropyrum pernix 98.58
d2h8pc157 Potassium channel protein {Streptomyces coelicolor 98.34
d1r3jc_103 Potassium channel protein {Streptomyces coelicolor 98.33
d1xl4a2116 Inward rectifier potassium channel kirbac3.1 {Magn 97.61
d1p7ba2116 Inward rectifier potassium channel Kirbac1.1 {Burk 97.41
d1p7ba2116 Inward rectifier potassium channel Kirbac1.1 {Burk 96.87
d1xl4a2116 Inward rectifier potassium channel kirbac3.1 {Magn 96.29
d1lnqa280 Potassium channel-related protein MthK {Archaeon M 94.61
d1lnqa280 Potassium channel-related protein MthK {Archaeon M 88.36
>d1orsc_ f.14.1.1 (C:) Potassium channel KVAP {Archaeon Aeropyrum pernix [TaxId: 56636]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: Voltage-gated potassium channels
superfamily: Voltage-gated potassium channels
family: Voltage-gated potassium channels
domain: Potassium channel KVAP
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=99.74  E-value=1.9e-19  Score=145.39  Aligned_cols=124  Identities=14%  Similarity=0.187  Sum_probs=106.9

Q ss_pred             hHhhHhHHHHHhhhheeeEEecccCCccccccCccccccCCCCcccccccccCCCCchhhhhhhHHHHHHHHHHHHhhhc
Q psy15554         33 VILAVTSVFFICVSVVSFALKTHPDMRVPTIRNSSFFISLDNSTAWVLHKEKTDPHAAFFYVELACNAWFTFELLVRAVV  112 (339)
Q Consensus        33 ~~~~~~i~~~I~ls~i~~~l~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ie~~~~~iF~~E~~lrl~~  112 (339)
                      ..++..+.+++++|++.+++||.|+..                         +++...+..+|.+++++|++||++|+++
T Consensus         6 p~~e~~i~~lillnvi~~~let~~~~~-------------------------~~~~~~l~~~e~v~~~iF~~E~~lrl~~   60 (132)
T d1orsc_           6 PLVELGVSYAALLSVIVVVVEYTMQLS-------------------------GEYLVRLYLVDLILVIILWADYAYRAYK   60 (132)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHSCCC-------------------------SHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhccccc-------------------------hhhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            468999999999999999999966542                         2345678999999999999999999999


Q ss_pred             cCcchhhccccccchhhhhhhHHHHHHHHccccccchhHHHHHhhhhhhcccccccCcchhHHHHHHHHHHHHH
Q psy15554        113 SPNIFQFIRSPVNVIDIIATLSFYTDILLQDKVQQSDILEFFSIIRILRLFKLTRHSPGLKILIHTFKASAKEL  186 (339)
Q Consensus       113 a~~~~~y~~~~~niiDl~~ilp~~v~~~~~~~~~~~~~lr~lRllRllRilrl~r~~~~l~~l~~tl~~s~~~l  186 (339)
                      +++|.+|.+  ||++|+++++|.+.....+   +..+.+|.+|++|++|++|+.|..++.+.+..++.++.+++
T Consensus        61 ~~~~~~~~~--~~~iDl~ai~p~~~~~~~~---~~~~~lr~lR~~R~~R~lrl~~~~~~~~~ll~ai~~s~~~l  129 (132)
T d1orsc_          61 SGDPAGYVK--KTLYEIPALVPAGLLALIE---GHLAGLGLFRLVRLLRFLRILLIISRGSKFLSAIADAADKL  129 (132)
T ss_dssp             TTSTTTTTT--TCGGGTGGGSCHHHHHHHH---HHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCccceeCC--cchHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            999888875  4999999999999887654   24567889999999999999999999999999999888876
>d2h8pc1 f.14.1.1 (C:22-78) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]} Back     information, alignment and structure
>d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]} Back     information, alignment and structure
>d1orsc_ f.14.1.1 (C:) Potassium channel KVAP {Archaeon Aeropyrum pernix [TaxId: 56636]} Back     information, alignment and structure
>d2h8pc1 f.14.1.1 (C:22-78) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]} Back     information, alignment and structure
>d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]} Back     information, alignment and structure
>d1xl4a2 f.14.1.1 (A:23-138) Inward rectifier potassium channel kirbac3.1 {Magnetospirillum magnetotacticum [TaxId: 188]} Back     information, alignment and structure
>d1p7ba2 f.14.1.1 (A:36-151) Inward rectifier potassium channel Kirbac1.1 {Burkholderia pseudomallei [TaxId: 28450]} Back     information, alignment and structure
>d1p7ba2 f.14.1.1 (A:36-151) Inward rectifier potassium channel Kirbac1.1 {Burkholderia pseudomallei [TaxId: 28450]} Back     information, alignment and structure
>d1xl4a2 f.14.1.1 (A:23-138) Inward rectifier potassium channel kirbac3.1 {Magnetospirillum magnetotacticum [TaxId: 188]} Back     information, alignment and structure
>d1lnqa2 f.14.1.1 (A:19-98) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} Back     information, alignment and structure
>d1lnqa2 f.14.1.1 (A:19-98) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} Back     information, alignment and structure