Psyllid ID: psy1561

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-----
IVRPNSALLVIDVQNDFISGTLNLSQCSAKQNGLQALFRNDKGKIYALKDNELEETFAVFDLNQDGLIDREEFAFCWNRWIKVVIEPINKLLDTVNFNAVFYSLDWHPSNHVSFIDNIKLRKIHHTSTIQPEDAQTYDTVVFDGDTPIRQRLWPRHCVQDSWGAELHKDLKVVDNAIKVYKGTDPEVDSYSVFWDNKKLKGTSLAKQLEAKKVTDVYVCGLAYDVCVGASAIDAITIGYRTILIEDCCRGVDMDDMERTRNTILENYGSCVQSDEVLGQHENTRK
ccccccEEEEEEEEcccccccccccccccccccccccccccccccccccccccccEEEEEEcccccccccccccccccccccHHHHHHHHHHHcccccEEEEEcccccccccccccccccccccccccccccccccccEEEcccccccccccccccccccccccccccccccccccEEEEcccccccccccccccccccccccHHHHHHHccccEEEEEEEccHHHHHHHHHHHHHcccEEEEEcccEEEEccccHHHHHHHHHHcccEEEEcHHHHHHHHcccc
ccccEEEEEEEEccHcccccccccHHHHHHHHHHHHHHHHccccEEEcEccccccEEEEEEccccccccccccccccccHHHHHHHHHHHHHHcccccEEEEEccccccccccHHHcccccEcccccccccccccccccEEEccccccccEcEccccEcccHHHcEcccccccHHEEEEEcccccccccEHHEEcccccccccHHHHHHHccccEEEEEEEccccHHHHHHHHHHHcccEEEEEEEEEEcccHHHHHHHHHHHHHcccEEEEHHHHHHHHccccc
IVRPNSALLVIDVQNdfisgtlnlsqcsAKQNGLQALfrndkgkiyalkdneleETFAVFdlnqdglidreefAFCWNRWIKVVIEPINKLLDTVNFNAVFYsldwhpsnhvsfidniklrkihhtstiqpedaqtydtvvfdgdtpirqrlwprhcvqdswgaelhKDLKVVDNAIKVykgtdpevdsysvfwdnkklkgtSLAKqleakkvtDVYVCGLAYDVCVGASAIDAITIGYRTILIEdccrgvdmddmeRTRNTILENygscvqsdevlgqhentrk
IVRPNSALLVIDVQNDFISGTLNLSQCSAKQNGLQALFRNDKGKIYALKDNELEETFAVFDLNQDGLIDREEFAFCWNRWIKVVIEPINKLLDTVNFNAVFYSLDWHPSNHVSFIDNIKLRKIHHTstiqpedaqtydTVVFDGDTPIRQRLWPRHCVQDSWGAELHKDLKVVDNAIKVYkgtdpevdsysvfwdnKKLKgtslakqleakkvtDVYVCGLAYDVCVGASAIDAITIGYRTILIEDCCRGVDMDDMERTRNTIlenygscvqsdevlgqhentrk
IVRPNSALLVIDVQNDFISGTLNLSQCSAKQNGLQALFRNDKGKIYALKDNELEETFAVFDLNQDGLIDREEFAFCWNRWIKVVIEPINKLLDTVNFNAVFYSLDWHPSNHVSFIDNIKLRKIHHTSTIQPEDAQTYDTVVFDGDTPIRQRLWPRHCVQDSWGAELHKDLKVVDNAIKVYKGTDPEVDSYSVFWDNKKLKGTSLAKQLEAKKVTDVYVCGLAYDVCVGASAIDAITIGYRTILIEDCCRGVDMDDMERTRNTILENYGSCVQSDEVLGQHENTRK
******ALLVIDVQNDFISGTLNLSQCSAKQNGLQALFRNDKGKIYALKDNELEETFAVFDLNQDGLIDREEFAFCWNRWIKVVIEPINKLLDTVNFNAVFYSLDWHPSNHVSFIDNIKLRKIHHTSTIQPEDAQTYDTVVFDGDTPIRQRLWPRHCVQDSWGAELHKDLKVVDNAIKVYKGTDPEVDSYSVFWDNKKLKGTSLAKQLEAKKVTDVYVCGLAYDVCVGASAIDAITIGYRTILIEDCCRGVDMDDMERTRNTILENYGSCV**************
***PNSALLVIDVQNDFISGTLNLSQCSAKQNGLQAL************DNELEETFAVFDLNQDGLIDREEFAFCWNRWIKVVIEPINKLLDTVNFNAVFYSLDWHPSNHVSFIDNIKLRKIHHTSTIQPEDAQTYDTVVFDGDTPIRQRLWPRHCVQDSWGAELHKDLKVVDNAIKVYKGTDPEVDSYSVFWDNKKLKGTSLAKQLEAKKVTDVYVCGLAYDVCVGASAIDAITIGYRTILIEDCCRGVDMDDMERTRNTILENYGSCVQSDEV*********
IVRPNSALLVIDVQNDFISGTLNLSQCSAKQNGLQALFRNDKGKIYALKDNELEETFAVFDLNQDGLIDREEFAFCWNRWIKVVIEPINKLLDTVNFNAVFYSLDWHPSNHVSFIDNIKLRKIHHTSTIQPEDAQTYDTVVFDGDTPIRQRLWPRHCVQDSWGAELHKDLKVVDNAIKVYKGTDPEVDSYSVFWDNKKLKGTSLAKQLEAKKVTDVYVCGLAYDVCVGASAIDAITIGYRTILIEDCCRGVDMDDMERTRNTILENYGSCVQSDEVLGQHENTRK
IVRPNSALLVIDVQNDFISGTLNLSQCSAKQNGLQALFRNDKGKIYALKDNELEETFAVFDLNQDGLIDREEFAFCWNRWIKVVIEPINKLLDTVNFNAVFYSLDWHPSNHVSFIDNIKLRKIHHTSTIQPEDAQTYDTVVFDGDTPIRQRLWPRHCVQDSWGAELHKDLKVVDNAIKVYKGTDPEVDSYSVFWDNKKLKGTSLAKQLEAKKVTDVYVCGLAYDVCVGASAIDAITIGYRTILIEDCCRGVDMDDMERTRNTILENYGSCVQSDEVLGQHE****
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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IVRPNSALLVIDVQNDFISGTLNLSQCSAKQNGLQALFRNDKGKIYALKDNELEETFAVFDLNQDGLIDREEFAFCWNRWIKVVIEPINKLLDTVNFNAVFYSLDWHPSNHVSFIDNIKLRKIHHTSTIQPEDAQTYDTVVFDGDTPIRQRLWPRHCVQDSWGAELHKDLKVVDNAIKVYKGTDPEVDSYSVFWDNKKLKGTSLAKQLEAKKVTDVYVCGLAYDVCVGASAIDAITIGYRTILIEDCCRGVDMDDMERTRNTILENYGSCVQSDEVLGQHENTRK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query285 2.2.26 [Sep-21-2011]
P21369213 Pyrazinamidase/nicotinami N/A N/A 0.519 0.694 0.377 2e-22
P53184216 Nicotinamidase OS=Sacchar yes N/A 0.578 0.763 0.329 8e-18
Q9USS0220 Nicotinamidase OS=Schizos yes N/A 0.529 0.686 0.308 1e-11
Q88FY5213 Maleamate amidohydrolase yes N/A 0.273 0.366 0.346 0.0004
>sp|P21369|PNCA_ECOLI Pyrazinamidase/nicotinamidase OS=Escherichia coli (strain K12) GN=pncA PE=3 SV=1 Back     alignment and function desciption
 Score =  106 bits (264), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 63/167 (37%), Positives = 87/167 (52%), Gaps = 19/167 (11%)

Query: 89  NKLLD--TVNFNAVFYSLDWHPSNHVSFIDNIKLRKIHHTSTIQPEDAQTYDTVVFDGDT 146
           N+L+D       AV  S DWHP+NH SF                    + Y     DG  
Sbjct: 34  NRLIDWCQSRGEAVIASQDWHPANHGSFASQ--------------HGVEPYTPGQLDG-- 77

Query: 147 PIRQRLWPRHCVQDSWGAELHKDLKVVDNAIKVYKGTDPEVDSYSVFWDNKKLKGTSLAK 206
            + Q  WP HCVQ+S GA+LH  L     A   +KG +P VDSYS F+DN + + TSL  
Sbjct: 78  -LPQTFWPDHCVQNSEGAQLHPLLHQKAIAAVFHKGENPLVDSYSAFFDNGRRQKTSLDD 136

Query: 207 QLEAKKVTDVYVCGLAYDVCVGASAIDAITIGYRTILIEDCCRGVDM 253
            L   ++ ++ V GLA D CV  + +DA+ +GY+  +I D CRGV++
Sbjct: 137 WLRDHEIDELIVMGLATDYCVKFTVLDALQLGYKVNVITDGCRGVNI 183

Escherichia coli (strain K12) (taxid: 83333)
EC: 3EC: .EC: 5EC: .EC: 1EC: .EC: 1EC: 9
>sp|P53184|PNC1_YEAST Nicotinamidase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PNC1 PE=1 SV=1 Back     alignment and function description
>sp|Q9USS0|PNC1_SCHPO Nicotinamidase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pnc1 PE=3 SV=2 Back     alignment and function description
>sp|Q88FY5|NICF_PSEPK Maleamate amidohydrolase OS=Pseudomonas putida (strain KT2440) GN=nicF PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query285
270014887302 hypothetical protein TcasGA2_TC010874 [T 0.849 0.801 0.672 2e-99
347965895371 AGAP001435-PA [Anopheles gambiae str. PE 0.866 0.665 0.609 1e-96
91092748332 PREDICTED: similar to pyrazinamidase/nic 0.849 0.728 0.599 3e-96
157167903355 pyrazinamidase/nicotinamidase [Aedes aeg 0.849 0.681 0.613 4e-96
383865508 585 PREDICTED: uncharacterized protein LOC10 0.849 0.413 0.588 3e-94
195450156357 GK22349 [Drosophila willistoni] gi|19416 0.905 0.722 0.567 3e-93
195112126357 GI22421 [Drosophila mojavensis] gi|19391 0.870 0.694 0.572 1e-92
340711590 586 PREDICTED: hypothetical protein LOC10065 0.849 0.412 0.581 3e-92
390179623341 GA27584 [Drosophila pseudoobscura pseudo 0.905 0.756 0.564 3e-92
307183363 582 Exosome complex exonuclease RRP4 [Campon 0.870 0.426 0.568 3e-92
>gi|270014887|gb|EFA11335.1| hypothetical protein TcasGA2_TC010874 [Tribolium castaneum] Back     alignment and taxonomy information
 Score =  368 bits (944), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 166/247 (67%), Positives = 206/247 (83%), Gaps = 5/247 (2%)

Query: 35  QALFRNDKGKIYALKDNELEETFAVFDLNQDGLIDREEFAFCWNRWIKV-----VIEPIN 89
           +ALFRNDKGKIY L++ +L ETF VFD N DG IDREEF FCWN WIK+     V+EPIN
Sbjct: 26  RALFRNDKGKIYNLEEEKLRETFNVFDGNNDGFIDREEFVFCWNHWIKIQNGLEVVEPIN 85

Query: 90  KLLDTVNFNAVFYSLDWHPSNHVSFIDNIKLRKIHHTSTIQPEDAQTYDTVVFDGDTPIR 149
            LLDTV F+ VFYSLDWHPSNHVSFIDNI  R+IH +S +  E+AQTYDTV+F G  P++
Sbjct: 86  HLLDTVQFDVVFYSLDWHPSNHVSFIDNIGQREIHPSSPVTAENAQTYDTVIFAGPPPMK 145

Query: 150 QRLWPRHCVQDSWGAELHKDLKVVDNAIKVYKGTDPEVDSYSVFWDNKKLKGTSLAKQLE 209
           QRLWPRHCVQD+WG+ELHKDLKVV+N+IKVYKGT+P+VDSYSVFWDNKK+  T+L  QL 
Sbjct: 146 QRLWPRHCVQDTWGSELHKDLKVVENSIKVYKGTNPDVDSYSVFWDNKKMTDTTLCAQLR 205

Query: 210 AKKVTDVYVCGLAYDVCVGASAIDAITIGYRTILIEDCCRGVDMDDMERTRNTILENYGS 269
            +  TD+Y+CGLAYDVCVGA+A+DA+ IGYRTIL++DC RGVD+ D+E+T+NT+++N G 
Sbjct: 206 MRNATDIYICGLAYDVCVGATAVDALAIGYRTILLDDCSRGVDLMDIEKTKNTVIKNNGV 265

Query: 270 CVQSDEV 276
            + S++V
Sbjct: 266 IINSNQV 272

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|347965895|ref|XP_321695.5| AGAP001435-PA [Anopheles gambiae str. PEST] gi|333470305|gb|EAA01751.5| AGAP001435-PA [Anopheles gambiae str. PEST] Back     alignment and taxonomy information
>gi|91092748|ref|XP_973348.1| PREDICTED: similar to pyrazinamidase/nicotinamidase [Tribolium castaneum] Back     alignment and taxonomy information
>gi|157167903|ref|XP_001662895.1| pyrazinamidase/nicotinamidase [Aedes aegypti] gi|108881512|gb|EAT45737.1| AAEL002995-PA [Aedes aegypti] Back     alignment and taxonomy information
>gi|383865508|ref|XP_003708215.1| PREDICTED: uncharacterized protein LOC100879942 [Megachile rotundata] Back     alignment and taxonomy information
>gi|195450156|ref|XP_002072389.1| GK22349 [Drosophila willistoni] gi|194168474|gb|EDW83375.1| GK22349 [Drosophila willistoni] Back     alignment and taxonomy information
>gi|195112126|ref|XP_002000627.1| GI22421 [Drosophila mojavensis] gi|193917221|gb|EDW16088.1| GI22421 [Drosophila mojavensis] Back     alignment and taxonomy information
>gi|340711590|ref|XP_003394358.1| PREDICTED: hypothetical protein LOC100650841 [Bombus terrestris] Back     alignment and taxonomy information
>gi|390179623|ref|XP_002138089.2| GA27584 [Drosophila pseudoobscura pseudoobscura] gi|388859924|gb|EDY68647.2| GA27584 [Drosophila pseudoobscura pseudoobscura] Back     alignment and taxonomy information
>gi|307183363|gb|EFN70221.1| Exosome complex exonuclease RRP4 [Camponotus floridanus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query285
FB|FBgn0051216357 Naam "Nicotinamide amidase" [D 0.789 0.630 0.588 7.5e-73
WB|WBGene00013336316 pnc-2 [Caenorhabditis elegans 0.645 0.582 0.341 3.9e-35
WB|WBGene00021395335 pnc-1 [Caenorhabditis elegans 0.663 0.564 0.326 1e-34
DICTYBASE|DDB_G0293618209 pncA "nicotinamidase" [Dictyos 0.638 0.870 0.361 1.7e-34
UNIPROTKB|Q9KLN1206 VC_A0712 "Pyrazinamidase/nicot 0.375 0.519 0.439 3e-30
TIGR_CMR|VC_A0712206 VC_A0712 "pyrazinamidase/nicot 0.375 0.519 0.439 3e-30
UNIPROTKB|P21369213 pncA "pyrazinamidase / nicotin 0.529 0.708 0.357 1.2e-24
SGD|S000003005216 PNC1 "Nicotinamidase that conv 0.578 0.763 0.329 1e-23
UNIPROTKB|G4MWG0230 MGG_08976 "Nicotinamidase" [Ma 0.642 0.795 0.343 5.4e-23
TIGR_CMR|GSU_2290201 GSU_2290 "pyrazinamidase/nicot 0.459 0.651 0.392 6.9e-23
FB|FBgn0051216 Naam "Nicotinamide amidase" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 736 (264.1 bits), Expect = 7.5e-73, P = 7.5e-73
 Identities = 133/226 (58%), Positives = 173/226 (76%)

Query:    57 FAVFDLNQDGLIDREEFAFCW-NRWIKVVIEPINKLLDTVNFNAVFYSLDWHPSNHVSFI 115
             F + D+  D +    + + C   +    ++EPINKLLDTV+F+AVFYSLDWHPS+HVSFI
Sbjct:    99 FLIVDVQNDFISGSLDISNCSAQQQGHEILEPINKLLDTVDFDAVFYSLDWHPSDHVSFI 158

Query:   116 DNIKLRKIHHTSTIQPEDAQTYDTVVFDGDTPIRQRLWPRHCVQDSWGAELHKDLKVVDN 175
             DN+K+R +  +S +  + A+ +DTV+F G  P++QRLWPRHCVQDSWGAELHKDLKVVD+
Sbjct:   159 DNVKMRPMDESSALDSDSAKVFDTVIFAGPPPMKQRLWPRHCVQDSWGAELHKDLKVVDH 218

Query:   176 AIKVYKGTDPEVDSYSVFWDNKKLKGTSLAKQLEAKKVTDVYVCGLAYDVCVGASAIDAI 235
              IKVYKGT+PEVDSYSVFWDNKKL  T+L  QL+ K  TD+YVCGLAYDVCVGA+A+DA+
Sbjct:   219 GIKVYKGTNPEVDSYSVFWDNKKLSDTTLNAQLKMKGATDIYVCGLAYDVCVGATAVDAL 278

Query:   236 TIGYRTILIEDCCRGVDMDDMERTRNTILENYGSCVQSDEVLGQHE 281
             + GYRTILI+DCCRG D+ D+E T+  +  + G  V +++V    E
Sbjct:   279 SAGYRTILIDDCCRGTDVHDIEHTKEKVNTSDGVIVHTNQVKAMAE 324
GO:0008152 "metabolic process" evidence=IEA
GO:0005509 "calcium ion binding" evidence=IEA
GO:0008936 "nicotinamidase activity" evidence=IDA
GO:0006979 "response to oxidative stress" evidence=IMP
GO:0008340 "determination of adult lifespan" evidence=IMP
GO:0043524 "negative regulation of neuron apoptotic process" evidence=IDA
WB|WBGene00013336 pnc-2 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
WB|WBGene00021395 pnc-1 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0293618 pncA "nicotinamidase" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
UNIPROTKB|Q9KLN1 VC_A0712 "Pyrazinamidase/nicotinamidase" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] Back     alignment and assigned GO terms
TIGR_CMR|VC_A0712 VC_A0712 "pyrazinamidase/nicotinamidase" [Vibrio cholerae O1 biovar El Tor (taxid:686)] Back     alignment and assigned GO terms
UNIPROTKB|P21369 pncA "pyrazinamidase / nicotinamidase" [Escherichia coli K-12 (taxid:83333)] Back     alignment and assigned GO terms
SGD|S000003005 PNC1 "Nicotinamidase that converts nicotinamide to nicotinic acid" [Saccharomyces cerevisiae (taxid:4932)] Back     alignment and assigned GO terms
UNIPROTKB|G4MWG0 MGG_08976 "Nicotinamidase" [Magnaporthe oryzae 70-15 (taxid:242507)] Back     alignment and assigned GO terms
TIGR_CMR|GSU_2290 GSU_2290 "pyrazinamidase/nicotinamidase, putative" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query285
cd01011196 cd01011, nicotinamidase, Nicotinamidase/pyrazinami 3e-68
PTZ00331212 PTZ00331, PTZ00331, alpha/beta hydrolase; Provisio 3e-55
PRK11609212 PRK11609, PRK11609, nicotinamidase/pyrazinamidase; 4e-38
cd00431161 cd00431, cysteine_hydrolases, Cysteine hydrolases; 2e-30
COG1335205 COG1335, PncA, Amidases related to nicotinamidase 2e-27
pfam00857173 pfam00857, Isochorismatase, Isochorismatase family 9e-18
cd01015179 cd01015, CSHase, N-carbamoylsarcosine amidohydrola 5e-08
cd01014155 cd01014, nicotinamidase_related, Nicotinamidase_ r 1e-07
cd01012157 cd01012, YcaC_related, YcaC related amidohydrolase 7e-05
pfam1320225 pfam13202, EF_hand_3, EF hand 9e-04
pfam1383353 pfam13833, EF_hand_6, EF-hand domain pair 0.001
PRK11440188 PRK11440, PRK11440, putative hydrolase; Provisiona 0.001
cd0005163 cd00051, EFh, EF-hand, calcium binding motif; A di 0.001
pfam0003629 pfam00036, efhand, EF hand 0.003
smart0005429 smart00054, EFh, EF-hand, calcium binding motif 0.004
>gnl|CDD|238493 cd01011, nicotinamidase, Nicotinamidase/pyrazinamidase (PZase) Back     alignment and domain information 
 Score =  209 bits (535), Expect = 3e-68
 Identities = 69/177 (38%), Positives = 94/177 (53%), Gaps = 18/177 (10%)

Query: 84  VIEPINKLLDTVNFNAVFYSLDWHPSNHVSFIDNIKLRKIHHTSTIQPEDAQTYDTVVFD 143
           ++  IN LL    ++ V  + DWHP+NH SF  N                   + T    
Sbjct: 27  IVPLINALLSLFQYDLVVATQDWHPANHASFASN-------------HPGQMPFIT---- 69

Query: 144 GDTPIRQRLWPRHCVQDSWGAELHKDLKVVDNAIKVYKGTDPEVDSYSVFWDNKKLKGTS 203
              P  Q LWP HCVQ + GAELH  L V D  + V KGT+P++DSYS F+DN +   T 
Sbjct: 70  -LPPGPQVLWPDHCVQGTPGAELHPGLPVPDIDLIVRKGTNPDIDSYSAFFDNDRRSSTG 128

Query: 204 LAKQLEAKKVTDVYVCGLAYDVCVGASAIDAITIGYRTILIEDCCRGVDMDDMERTR 260
           LA+ L  + +  V V GLA D CV A+A+DA+  G+   ++ED CR VD + +ER  
Sbjct: 129 LAEYLRERGIDRVDVVGLATDYCVKATALDALKAGFEVRVLEDACRAVDPETIERAI 185

Nicotinamidase, a ubiquitous enzyme in prokaryotes, converts nicotinamide to nicotinic acid (niacin) and ammonia, which in turn can be recycled to make nicotinamide adenine dinucleotide (NAD). The same enzyme is also called pyrazinamidase, because in converts the tuberculosis drug pyrazinamide (PZA) into its active form pyrazinoic acid (POA). Length = 196
>gnl|CDD|240363 PTZ00331, PTZ00331, alpha/beta hydrolase; Provisional Back     alignment and domain information
>gnl|CDD|183228 PRK11609, PRK11609, nicotinamidase/pyrazinamidase; Provisional Back     alignment and domain information
>gnl|CDD|238245 cd00431, cysteine_hydrolases, Cysteine hydrolases; This family contains amidohydrolases, like CSHase (N-carbamoylsarcosine amidohydrolase), involved in creatine metabolism and nicotinamidase, converting nicotinamide to nicotinic acid and ammonia in the pyridine nucleotide cycle Back     alignment and domain information
>gnl|CDD|224254 COG1335, PncA, Amidases related to nicotinamidase [Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information
>gnl|CDD|216156 pfam00857, Isochorismatase, Isochorismatase family Back     alignment and domain information
>gnl|CDD|238497 cd01015, CSHase, N-carbamoylsarcosine amidohydrolase (CSHase) hydrolyzes N-carbamoylsarcosine to sarcosine, carbon dioxide and ammonia Back     alignment and domain information
>gnl|CDD|238496 cd01014, nicotinamidase_related, Nicotinamidase_ related amidohydrolases Back     alignment and domain information
>gnl|CDD|238494 cd01012, YcaC_related, YcaC related amidohydrolases; E Back     alignment and domain information
>gnl|CDD|205383 pfam13202, EF_hand_3, EF hand Back     alignment and domain information
>gnl|CDD|222407 pfam13833, EF_hand_6, EF-hand domain pair Back     alignment and domain information
>gnl|CDD|183137 PRK11440, PRK11440, putative hydrolase; Provisional Back     alignment and domain information
>gnl|CDD|238008 cd00051, EFh, EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands Back     alignment and domain information
>gnl|CDD|200946 pfam00036, efhand, EF hand Back     alignment and domain information
>gnl|CDD|197492 smart00054, EFh, EF-hand, calcium binding motif Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 285
KOG4003|consensus223 100.0
PTZ00331212 alpha/beta hydrolase; Provisional 100.0
PRK11609212 nicotinamidase/pyrazinamidase; Provisional 100.0
cd01011196 nicotinamidase Nicotinamidase/pyrazinamidase (PZas 100.0
PRK11440188 putative hydrolase; Provisional 100.0
PF00857174 Isochorismatase: Isochorismatase family; InterPro: 100.0
cd01015179 CSHase N-carbamoylsarcosine amidohydrolase (CSHase 100.0
PLN02621197 nicotinamidase 100.0
COG1335205 PncA Amidases related to nicotinamidase [Secondary 100.0
TIGR03614226 RutB pyrimidine utilization protein B. RL Proc Nat 100.0
cd01013203 isochorismatase Isochorismatase, also known as 2,3 100.0
PLN02743239 nicotinamidase 100.0
cd00431161 cysteine_hydrolases Cysteine hydrolases; This fami 100.0
cd01012157 YcaC_related YcaC related amidohydrolases; E.coli 99.97
cd01014155 nicotinamidase_related Nicotinamidase_ related ami 99.97
COG1535218 EntB Isochorismate hydrolase [Secondary metabolite 99.89
KOG4044|consensus201 99.56
PF0003629 EF-hand_1: EF hand; InterPro: IPR018248 Many calci 95.47
PF1320225 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ 93.46
PF1340531 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J 91.05
PF1383354 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 87.44
>KOG4003|consensus Back     alignment and domain information 
Probab=100.00  E-value=7.1e-47  Score=316.92  Aligned_cols=213  Identities=31%  Similarity=0.513  Sum_probs=179.4

Q ss_pred             ceEEEEEeeeccCCcccCCCccchhhcccccceeccCCCCcchhchHHHHHHHHHHHhcCCCcchhhhhhhhhccchhhh
Q psy1561           5 NSALLVIDVQNDFISGTLNLSQCSAKQNGLQALFRNDKGKIYALKDNELEETFAVFDLNQDGLIDREEFAFCWNRWIKVV   84 (285)
Q Consensus         5 ~~aLliiD~QndF~~G~L~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wi~~i   84 (285)
                      +.+||||||||||++|++......+             |.                                     ..|
T Consensus         1 ~~~l~vvd~qndfi~~~~~~~s~~E-------------~~-------------------------------------~~i   30 (223)
T KOG4003|consen    1 MKTLIVVDMQNDFISPLGSLTSVPE-------------GE-------------------------------------ELI   30 (223)
T ss_pred             CceEEEEeccccccccccccccCCC-------------ch-------------------------------------hhh
Confidence            5799999999999998877753221             11                                     025


Q ss_pred             HHHHHHHHhhc-CCCeEEEEeccCCCCCCchhhccccccCCCCCCCCCCCCCccceeeecCCCCcccccCCccccCCCCC
Q psy1561          85 IEPINKLLDTV-NFNAVFYSLDWHPSNHVSFIDNIKLRKIHHTSTIQPEDAQTYDTVVFDGDTPIRQRLWPRHCVQDSWG  163 (285)
Q Consensus        85 v~~I~~L~~~~-~~~~Ii~T~D~Hp~~h~sF~~~~~~~~~~p~~~i~~~~~~~~~~~~~~~~~~~~~~~WP~Hcv~Gt~G  163 (285)
                      .|.++.|.+.- .|+.|++|.||||.+|+||.+++..+.|.|..  +...+++|+.+..      +..+||.||+++|||
T Consensus        31 ~Pi~~lLq~~d~dw~~Vv~TKDwHP~~HiSF~~~h~~~~p~~~~--t~~~~~~~d~V~~------~~vl~p~HCv~ntwG  102 (223)
T KOG4003|consen   31 NPISDLLQDADRDWHRVVVTKDWHPSRHISFAKNHKDKEPYSTY--TYHSPRPGDDVTQ------EGILWPVHCVKNTWG  102 (223)
T ss_pred             ccHHHHHHhcccccceEEEecccCcccceehhhhccCCCCCCCC--cccCCCcCCchhe------eeecchhhhhccCCC
Confidence            55555555433 36799999999999999999988776665543  4445667777643      235899999999999


Q ss_pred             ccccccccccccceecccCCCCCCCccccccccccCCCccHHHHHHhCCccEEEEEcccCchhHHHHHHHHHhCCCeEEE
Q psy1561         164 AELHKDLKVVDNAIKVYKGTDPEVDSYSVFWDNKKLKGTSLAKQLEAKKVTDVYVCGLAYDVCVGASAIDAITIGYRTIL  243 (285)
Q Consensus       164 ~el~~eL~~~~~~~vi~K~~~~~~e~ySaF~~~~~~~~t~L~~~Lr~~gi~~viv~Gvatd~CV~~Ta~da~~~G~~v~V  243 (285)
                      .++++++.......+|.||.+++.|+||||+|+++++.|+|..+|++++|+.|+|+|+|+|+||+.||++|...||+++|
T Consensus       103 ~d~~~~~~~~~~~~~I~KG~D~~~eSYSaF~D~~GR~kt~L~~~L~k~~Id~V~IAGvA~DICVk~TaL~A~~~~y~t~v  182 (223)
T KOG4003|consen  103 VDQIMDQVVTKHIKIIDKGFDTDRESYSAFHDIWGRHKTDLNKYLEKHHIDEVYIAGVALDICVKATALSAAELGYKTTV  182 (223)
T ss_pred             CCcchhhhhhhheeecccCcchhHHHHHHHhhhcccchhhHHHHHHHcCCCeEEEeehhhHHHHHHHHhhHHHhCcceee
Confidence            99999999888889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eCCCCccCCHHHHHHHHHHHHHcCCEEEeHHH
Q psy1561         244 IEDCCRGVDMDDMERTRNTILENYGSCVQSDE  275 (285)
Q Consensus       244 v~Da~~~~~~~~~~~al~~m~~~g~~vits~e  275 (285)
                      +..|+++.+.+.++.+...+...+..+++-++
T Consensus       183 I~E~~~Gsst~si~~~~~~F~k~k~e~IS~~~  214 (223)
T KOG4003|consen  183 ILEYTRGSSTPSISDDPEVFNKVKEELISHNI  214 (223)
T ss_pred             ehhhhccCCCcccccCHHHHHHhhHHHhhccc
Confidence            99999999999999988888888888777544

>PTZ00331 alpha/beta hydrolase; Provisional Back     alignment and domain information
>PRK11609 nicotinamidase/pyrazinamidase; Provisional Back     alignment and domain information
>cd01011 nicotinamidase Nicotinamidase/pyrazinamidase (PZase) Back     alignment and domain information
>PRK11440 putative hydrolase; Provisional Back     alignment and domain information
>PF00857 Isochorismatase: Isochorismatase family; InterPro: IPR000868 This is a family of hydrolase enzymes Back     alignment and domain information
>cd01015 CSHase N-carbamoylsarcosine amidohydrolase (CSHase) hydrolyzes N-carbamoylsarcosine to sarcosine, carbon dioxide and ammonia Back     alignment and domain information
>PLN02621 nicotinamidase Back     alignment and domain information
>COG1335 PncA Amidases related to nicotinamidase [Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information
>TIGR03614 RutB pyrimidine utilization protein B Back     alignment and domain information
>cd01013 isochorismatase Isochorismatase, also known as 2,3 dihydro-2,3 dihydroxybenzoate synthase, catalyses the conversion of isochorismate, in the presence of water, to 2,3-dihydroxybenzoate and pyruvate, via the hydrolysis of a vinyl ether, an uncommon reaction in biological systems Back     alignment and domain information
>PLN02743 nicotinamidase Back     alignment and domain information
>cd00431 cysteine_hydrolases Cysteine hydrolases; This family contains amidohydrolases, like CSHase (N-carbamoylsarcosine amidohydrolase), involved in creatine metabolism and nicotinamidase, converting nicotinamide to nicotinic acid and ammonia in the pyridine nucleotide cycle Back     alignment and domain information
>cd01012 YcaC_related YcaC related amidohydrolases; E Back     alignment and domain information
>cd01014 nicotinamidase_related Nicotinamidase_ related amidohydrolases Back     alignment and domain information
>COG1535 EntB Isochorismate hydrolase [Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information
>KOG4044|consensus Back     alignment and domain information
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand Back     alignment and domain information
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A Back     alignment and domain information
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B Back     alignment and domain information
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query285
2wt9_A235 Acinetobacter Baumanii Nicotinamidase Pyrazinamidea 3e-26
2wta_A213 Acinetobacter Baumanii Nicotinamidase Pyrazinamidea 7e-25
1im5_A180 Crystal Structure Of Pyrazinamidase Of Pyrococcus H 3e-20
2h0r_A216 Structure Of The Yeast Nicotinamidase Pnc1p Length 6e-19
3v8e_A216 Crystal Structure Of The Yeast Nicotinamidase Pnc1p 9e-18
3r2j_A227 Crystal Structure Of Pnc1 From L. Infantum In Compl 2e-17
3pl1_A186 Determination Of The Crystal Structure Of The Pyraz 8e-08
3o90_A211 High Resolution Crystal Structures Of Streptococcus 5e-05
3s2s_A217 The Crystal Structure Of PyrazinamidaseNICOTINAMIDA 2e-04
3eef_A182 Crystal Structure Of N-Carbamoylsarcosine Amidase F 2e-04
3o94_A211 High Resolution Crystal Structures Of Streptococcus 5e-04
3o91_A211 High Resolution Crystal Structures Of Streptococcus 6e-04
>pdb|2WT9|A Chain A, Acinetobacter Baumanii Nicotinamidase Pyrazinamidease Length = 235 Back     alignment and structure 
Iteration: 1

 Score =  115 bits (288), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 64/197 (32%), Positives = 104/197 (52%), Gaps = 19/197 (9%)
Query: 84  VIEPINKLLDTVNFNAVFYSLDWHPSNHVSFIDNIKLRKIHHTSTIQPEDAQTYDTVVFD 143
           +I  IN+L     F  V  + DWHP NH+SF  N   +             Q ++T+  D
Sbjct: 56  IIPTINQLAGC--FENVVLTQDWHPDNHISFAANHPGK-------------QPFETIELD 100
Query: 144 GDTPIRQRLWPRHCVQDSWGAELHKDLKVVDNAIKVYKGTDPEVDSYSVFWDNKKLKGTS 203
             +   Q LWP+HC+Q +  AE H DL +    + + KG    +DSYS F +      T 
Sbjct: 101 YGS---QVLWPKHCIQGTHDAEFHPDLNIPTAQLIIRKGFHAHIDSYSAFMEADHTTMTG 157
Query: 204 LAKQLEAKKVTDVYVCGLAYDVCVGASAIDAITIGYRTILIEDCCRGVDMD-DMERTRNT 262
           L   L+ + +  VYV G+A D CV  +A+DA+  G++T++IED C+G+D++  +E+   T
Sbjct: 158 LTGYLKERGIDTVYVVGIATDFCVAWTALDAVKQGFKTLVIEDACKGIDLNGSLEQAWQT 217
Query: 263 ILENYGSCVQSDEVLGQ 279
           + +     +QS ++L +
Sbjct: 218 MQQQGVVRIQSTDLLNE 234
>pdb|1IM5|A Chain A, Crystal Structure Of Pyrazinamidase Of Pyrococcus Horikoshii In Complex With Zinc Length = 180 Back     alignment and structure
>pdb|2H0R|A Chain A, Structure Of The Yeast Nicotinamidase Pnc1p Length = 216 Back     alignment and structure
>pdb|3V8E|A Chain A, Crystal Structure Of The Yeast Nicotinamidase Pnc1p Bound To The Inhibitor Nicotinaldehyde Length = 216 Back     alignment and structure
>pdb|3R2J|A Chain A, Crystal Structure Of Pnc1 From L. Infantum In Complex With Nicotinate Length = 227 Back     alignment and structure
>pdb|3PL1|A Chain A, Determination Of The Crystal Structure Of The Pyrazinamidase From M.Tuberculosis : A Structure-Function Analysis For Prediction Resistance To Pyrazinamide Length = 186 Back     alignment and structure
>pdb|3O90|A Chain A, High Resolution Crystal Structures Of Streptococcus Pneumoniae Nicotinamidase With Trapped Intermediates Provide Insights Into Catalytic Mechanism And Inhibition By Aldehydes Length = 211 Back     alignment and structure
>pdb|3S2S|A Chain A, The Crystal Structure Of PyrazinamidaseNICOTINAMIDASE FROM Streptococcus Mutans Ua159 Length = 217 Back     alignment and structure
>pdb|3EEF|A Chain A, Crystal Structure Of N-Carbamoylsarcosine Amidase From Thermoplasma Acidophilum Length = 182 Back     alignment and structure
>pdb|3O94|A Chain A, High Resolution Crystal Structures Of Streptococcus Pneumoniae Nicotinamidase With Trapped Intermediates Provide Insights Into Catalytic Mechanism And Inhibition By Aldehydes Length = 211 Back     alignment and structure
>pdb|3O91|A Chain A, High Resolution Crystal Structures Of Streptococcus Pneumoniae Nicotinamidase With Trapped Intermediates Provide Insights Into Catalytic Mechanism And Inhibition By Aldehydes Length = 211 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query285
3r2j_A227 Alpha/beta-hydrolase-like protein; nicotinamidase, 3e-57
2wt9_A235 Nicotinamidase; hydrolase, pyrazinamidase; HET: GO 9e-57
3v8e_A216 Nicotinamidase; hydrolase; HET: JJJ; 2.71A {Saccha 4e-52
3gbc_A186 Pyrazinamidase/nicotinamidas PNCA; nicotinamidase 9e-49
1im5_A180 180AA long hypothetical pyrazinamidase/nicotinamid 2e-45
1im5_A180 180AA long hypothetical pyrazinamidase/nicotinamid 8e-04
3o94_A211 Nicotinamidase; hydrolase; 1.60A {Streptococcus pn 1e-42
3hb7_A204 Isochorismatase hydrolase; PS structural genomics, 5e-35
3hu5_A204 Isochorismatase family protein; structural genomic 2e-30
3eef_A182 N-carbamoylsarcosine amidase related protein; stru 1e-29
2fq1_A287 Isochorismatase; ENTB, NRPS, multi-domain, ACP, hy 1e-24
1nf9_A207 Phenazine biosynthesis protein PHZD; isochorismata 1e-23
3kl2_A226 Putative isochorismatase; structural genomics, unk 6e-23
3txy_A199 Isochorismatase family protein family; structural 6e-22
1nba_A264 N-carbamoylsarcosine amidohydrolase; hydrolase(IN 2e-21
3ot4_A236 Putative isochorismatase; NICF, maleamate hydrolas 6e-21
3irv_A233 Cysteine hydrolase; structural genomics, PSI-2, pr 4e-19
1j2r_A199 Hypothetical isochorismatase family protein YECD; 4e-18
3oqp_A211 Putative isochorismatase; catalytic triad, structu 3e-17
3oqp_A211 Putative isochorismatase; catalytic triad, structu 7e-04
3lqy_A190 Putative isochorismatase hydrolase; structural gen 2e-16
2a67_A167 Isochorismatase family protein; structural genomic 3e-13
2a67_A167 Isochorismatase family protein; structural genomic 2e-04
3mcw_A198 Putative hydrolase; isochorismatase family, struct 1e-12
3mcw_A198 Putative hydrolase; isochorismatase family, struct 2e-04
1yac_A208 Ycacgp, YCAC gene product; unknown bacterial hydro 2e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-07
1yzv_A204 Hypothetical protein; structural genomics, PSI, pr 6e-06
2hps_A186 Coelenterazine-binding protein with bound coelent; 3e-05
3li6_A66 Calcium-binding protein; calcium signaling protein 3e-04
2b34_A199 F35G2.2, MAR1 ribonuclease; isochorismatase family 3e-04
1nya_A176 Calerythrin; EF-hand, metal binding protein; NMR { 4e-04
2hpk_A208 Photoprotein berovin; structural genomics, PSI, pr 4e-04
2bec_A202 Calcineurin B homologous protein 2; calcineurin-ho 4e-04
1x9g_A200 Putative MAR1; structural genomics, protein struct 8e-04
1tiz_A67 Calmodulin-related protein, putative; helix-turn-h 8e-04
>3r2j_A Alpha/beta-hydrolase-like protein; nicotinamidase, cytoplasmic; 2.68A {Leishmania infantum} Length = 227 Back     alignment and structure
 Score =  182 bits (464), Expect = 3e-57
 Identities = 54/200 (27%), Positives = 82/200 (41%), Gaps = 33/200 (16%)

Query: 84  VIEPINKLLDTVNFNAVFYSLDWHPSNHVSFIDNIKLRKIHHTSTIQPEDAQTYDTVVFD 143
           +++ IN +   + F     + DWHP NH SF+ +                          
Sbjct: 61  LLDGINAVSSQLPFRYQVATQDWHPENHCSFVTHGGP----------------------- 97

Query: 144 GDTPIRQRLWPRHCVQDSWGAELHKDLKVVDNAIKVYKGTDPEVDSYSVFWDNKKLKGTS 203
                    WP HCVQ S GA+LH  L        + KG   + DSYS F ++     T 
Sbjct: 98  ---------WPPHCVQGSAGAQLHAGLHTQRINAVIRKGVTQQADSYSAFVEDNG-VSTG 147

Query: 204 LAKQLEAKKVTDVYVCGLAYDVCVGASAIDAITIGYRTILIEDCCRGVDMDDMERTRNTI 263
           LA  L +     V+VCG+AYD CV  +A+DA   G+  +L+ED    VD          +
Sbjct: 148 LAGLLHSIGARRVFVCGVAYDFCVFFTAMDARKNGFSVVLLEDLTAAVDDAAWSARTAEL 207

Query: 264 LENYGSCVQSDEVLGQHENT 283
            +     ++S  ++ +   T
Sbjct: 208 KDAGVVLLKSSALVAEGTQT 227
>2wt9_A Nicotinamidase; hydrolase, pyrazinamidase; HET: GOL; 1.65A {Acinetobacter baumannii} PDB: 2wta_A* Length = 235 Back     alignment and structure
>3v8e_A Nicotinamidase; hydrolase; HET: JJJ; 2.71A {Saccharomyces cerevisiae} PDB: 2h0r_A Length = 216 Back     alignment and structure
>1im5_A 180AA long hypothetical pyrazinamidase/nicotinamidase; pyrazinamide, tuberculosis, PZA resistance, drug resistance, metal ION catalysis; 1.65A {Pyrococcus horikoshii} SCOP: c.33.1.3 PDB: 1ilw_A Length = 180 Back     alignment and structure
>1im5_A 180AA long hypothetical pyrazinamidase/nicotinamidase; pyrazinamide, tuberculosis, PZA resistance, drug resistance, metal ION catalysis; 1.65A {Pyrococcus horikoshii} SCOP: c.33.1.3 PDB: 1ilw_A Length = 180 Back     alignment and structure
>3o94_A Nicotinamidase; hydrolase; 1.60A {Streptococcus pneumoniae} PDB: 3o90_A 3o91_A* 3o92_A* 3o93_A* Length = 211 Back     alignment and structure
>3hb7_A Isochorismatase hydrolase; PS structural genomics, midwest center for structural genomics structure initiative; 2.30A {Alkaliphilus metalliredigens} Length = 204 Back     alignment and structure
>3hu5_A Isochorismatase family protein; structural genomics, protein structure INI NEW YORK structural genomix research consortium, nysgxrc; 1.50A {Desulfovibrio vulgaris} Length = 204 Back     alignment and structure
>3eef_A N-carbamoylsarcosine amidase related protein; structural genomics, protein structure initiative, midwest center for structural genomics; 2.35A {Thermoplasma acidophilum} Length = 182 Back     alignment and structure
>2fq1_A Isochorismatase; ENTB, NRPS, multi-domain, ACP, hydrolase; 2.30A {Escherichia coli} Length = 287 Back     alignment and structure
>1nf9_A Phenazine biosynthesis protein PHZD; isochorismatase, enzyme, phenazine pathway, hydrolase; HET: BOG; 1.50A {Pseudomonas aeruginosa} SCOP: c.33.1.3 PDB: 1nf8_A* 3r77_A* Length = 207 Back     alignment and structure
>3kl2_A Putative isochorismatase; structural genomics, unknown function, PSI-2, protein struct initiative; 2.30A {Streptomyces avermitilis} Length = 226 Back     alignment and structure
>3txy_A Isochorismatase family protein family; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.70A {Burkholderia thailandensis} Length = 199 Back     alignment and structure
>1nba_A N-carbamoylsarcosine amidohydrolase; hydrolase(IN linear amides); 2.00A {Arthrobacter SP} SCOP: c.33.1.3 Length = 264 Back     alignment and structure
>3ot4_A Putative isochorismatase; NICF, maleamate hydrolase, hydrol; 2.40A {Bordetella bronchiseptica} PDB: 3uao_A Length = 236 Back     alignment and structure
>3irv_A Cysteine hydrolase; structural genomics, PSI-2, protein structure initiative, CY hydrolase; 1.60A {Pseudomonas syringae PV} Length = 233 Back     alignment and structure
>1j2r_A Hypothetical isochorismatase family protein YECD; parallel beta-sheet 3-2-1-4-5-6, alpha-beta-alpha motif, TET structural genomics; 1.30A {Escherichia coli} SCOP: c.33.1.3 Length = 199 Back     alignment and structure
>3oqp_A Putative isochorismatase; catalytic triad, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; 1.22A {Burkholderia xenovorans} Length = 211 Back     alignment and structure
>3oqp_A Putative isochorismatase; catalytic triad, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; 1.22A {Burkholderia xenovorans} Length = 211 Back     alignment and structure
>2a67_A Isochorismatase family protein; structural genomics, PSI, protein structure initiative, MIDW center for structural genomics, MCSG; 2.00A {Enterococcus faecalis} Length = 167 Back     alignment and structure
>2a67_A Isochorismatase family protein; structural genomics, PSI, protein structure initiative, MIDW center for structural genomics, MCSG; 2.00A {Enterococcus faecalis} Length = 167 Back     alignment and structure
>3mcw_A Putative hydrolase; isochorismatase family, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.06A {Chromobacterium violaceum} Length = 198 Back     alignment and structure
>3mcw_A Putative hydrolase; isochorismatase family, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.06A {Chromobacterium violaceum} Length = 198 Back     alignment and structure
>1yac_A Ycacgp, YCAC gene product; unknown bacterial hydrolase, three layer alpha-beta-alpha SA topology, ENTB homolog, cshase homolog; 1.80A {Escherichia coli} SCOP: c.33.1.3 Length = 208 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1yzv_A Hypothetical protein; structural genomics, PSI, protein structure initiative, STRU genomics of pathogenic protozoa consortium, SGPP; 2.00A {Trypanosoma cruzi} Length = 204 Back     alignment and structure
>2hps_A Coelenterazine-binding protein with bound coelent; bioluminescence, southeast collabora structural genomics, secsg, structural genomics, PSI; HET: CTZ; 1.72A {Renilla muelleri} PDB: 2hq8_A Length = 186 Back     alignment and structure
>3li6_A Calcium-binding protein; calcium signaling protein, assemble free energy, dynamic behaviour, cytoskeleton, metal binding; 2.50A {Entamoeba histolytica} Length = 66 Back     alignment and structure
>2b34_A F35G2.2, MAR1 ribonuclease; isochorismatase family, structural genomics, PSI, protein structure initiative; 2.14A {Caenorhabditis elegans} Length = 199 Back     alignment and structure
>1nya_A Calerythrin; EF-hand, metal binding protein; NMR {Saccharopolyspora erythraea} SCOP: a.39.1.5 Length = 176 Back     alignment and structure
>2hpk_A Photoprotein berovin; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics, secsg; 2.00A {Beroe abyssicola} Length = 208 Back     alignment and structure
>2bec_A Calcineurin B homologous protein 2; calcineurin-homologous protein, calcium-binding protein, NHE1 regulating protein; 2.70A {Homo sapiens} Length = 202 Back     alignment and structure
>1x9g_A Putative MAR1; structural genomics, protein structure initiative, SGPP, PSI structural genomics of pathogenic protozoa consortium; 2.41A {Leishmania donovani} SCOP: c.33.1.3 PDB: 1xn4_A Length = 200 Back     alignment and structure
>1tiz_A Calmodulin-related protein, putative; helix-turn-helix, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: a.39.1.5 Length = 67 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query285
3v8e_A216 Nicotinamidase; hydrolase; HET: JJJ; 2.71A {Saccha 100.0
2wt9_A235 Nicotinamidase; hydrolase, pyrazinamidase; HET: GO 100.0
3r2j_A227 Alpha/beta-hydrolase-like protein; nicotinamidase, 100.0
3gbc_A186 Pyrazinamidase/nicotinamidas PNCA; nicotinamidase 100.0
3hb7_A204 Isochorismatase hydrolase; PS structural genomics, 100.0
1im5_A180 180AA long hypothetical pyrazinamidase/nicotinamid 100.0
3eef_A182 N-carbamoylsarcosine amidase related protein; stru 100.0
3o94_A211 Nicotinamidase; hydrolase; 1.60A {Streptococcus pn 100.0
3hu5_A204 Isochorismatase family protein; structural genomic 100.0
3irv_A233 Cysteine hydrolase; structural genomics, PSI-2, pr 100.0
3kl2_A226 Putative isochorismatase; structural genomics, unk 100.0
3lqy_A190 Putative isochorismatase hydrolase; structural gen 100.0
1j2r_A199 Hypothetical isochorismatase family protein YECD; 100.0
3tg2_A223 Vibriobactin-specific isochorismatase; hydrolase; 100.0
3ot4_A236 Putative isochorismatase; NICF, maleamate hydrolas 100.0
1nf9_A207 Phenazine biosynthesis protein PHZD; isochorismata 100.0
1nba_A264 N-carbamoylsarcosine amidohydrolase; hydrolase(IN 100.0
3txy_A199 Isochorismatase family protein family; structural 100.0
3oqp_A211 Putative isochorismatase; catalytic triad, structu 100.0
3mcw_A198 Putative hydrolase; isochorismatase family, struct 100.0
4h17_A197 Hydrolase, isochorismatase family; rossmann-like f 100.0
2fq1_A287 Isochorismatase; ENTB, NRPS, multi-domain, ACP, hy 100.0
2a67_A167 Isochorismatase family protein; structural genomic 100.0
1yac_A208 Ycacgp, YCAC gene product; unknown bacterial hydro 100.0
2b34_A199 F35G2.2, MAR1 ribonuclease; isochorismatase family 99.98
1x9g_A200 Putative MAR1; structural genomics, protein struct 99.97
1yzv_A204 Hypothetical protein; structural genomics, PSI, pr 99.97
3nxa_A100 Protein S100-A16; S100 family, calcium binding pro 84.03
3zwh_A104 Protein S100-A4; Ca-binding protein-motor protein 82.6
3n22_A98 Protein S100-A2; EF-hand, calcium-binding, zinc-bi 80.11
>3v8e_A Nicotinamidase; hydrolase; HET: JJJ; 2.71A {Saccharomyces cerevisiae} PDB: 2h0r_A Back     alignment and structure
Probab=100.00  E-value=6.9e-50  Score=353.00  Aligned_cols=205  Identities=31%  Similarity=0.562  Sum_probs=174.5

Q ss_pred             eEEEEEeeeccCC--cccCCCccchhhcccccceeccCCCCcchhchHHHHHHHHHHHhcCCCcchhhhhhhhhccchhh
Q psy1561           6 SALLVIDVQNDFI--SGTLNLSQCSAKQNGLQALFRNDKGKIYALKDNELEETFAVFDLNQDGLIDREEFAFCWNRWIKV   83 (285)
Q Consensus         6 ~aLliiD~QndF~--~G~L~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wi~~   83 (285)
                      +|||||||||||+  +|+|+++++.                                                      +
T Consensus         2 ~ALlvID~QndF~~p~G~l~v~~~~------------------------------------------------------~   27 (216)
T 3v8e_A            2 KTLIVVDMQNDFISPLGSLTVPKGE------------------------------------------------------E   27 (216)
T ss_dssp             EEEEEECCBHHHHSTTSTTCCTTGG------------------------------------------------------G
T ss_pred             cEEEEEcCcccccCCCCcccCCCHH------------------------------------------------------H
Confidence            7999999999999  6999987643                                                      3


Q ss_pred             hHHHHHHHHhhcC--CCeEEEEeccCCCCCCchhhccccccCCCCCCCCCCCCCccceeeecCCCCcccccCCccccCCC
Q psy1561          84 VIEPINKLLDTVN--FNAVFYSLDWHPSNHVSFIDNIKLRKIHHTSTIQPEDAQTYDTVVFDGDTPIRQRLWPRHCVQDS  161 (285)
Q Consensus        84 iv~~I~~L~~~~~--~~~Ii~T~D~Hp~~h~sF~~~~~~~~~~p~~~i~~~~~~~~~~~~~~~~~~~~~~~WP~Hcv~Gt  161 (285)
                      ++++|++|++.+|  +.+||+|+||||++|++|++++++.  .|++.++.....+      .+....++.+||+||++||
T Consensus        28 iv~~i~~ll~~~r~~~~~Vi~t~d~H~~~h~sf~~~~~g~--~~f~~~~~~~p~~------~~~~~~~~~~wp~hcv~gt   99 (216)
T 3v8e_A           28 LINPISDLMQDADRDWHRIVVTRDWHPSRHISFAKNHKDK--EPYSTYTYHSPRP------GDDSTQEGILWPVHCVKNT   99 (216)
T ss_dssp             GHHHHHHHHHCGGGCEEEEEEEEECBCTTCTTBGGGSTTC--CTTCEEEEECSST------TCCCEEEEECBCSCCBTTS
T ss_pred             HHHHHHHHHHHHhhcCCEEEEecccCCCcCcchHhcCCCC--CCcceeecccccc------ccccccccccCchhhcCCC
Confidence            9999999999765  5699999999999999999875432  2332221111100      0112245678999999999


Q ss_pred             CCccccccccc---cccceecccCCCCCCCccccccccccCCCccHHHHHHhCCccEEEEEcccCchhHHHHHHHHHhCC
Q psy1561         162 WGAELHKDLKV---VDNAIKVYKGTDPEVDSYSVFWDNKKLKGTSLAKQLEAKKVTDVYVCGLAYDVCVGASAIDAITIG  238 (285)
Q Consensus       162 ~G~el~~eL~~---~~~~~vi~K~~~~~~e~ySaF~~~~~~~~t~L~~~Lr~~gi~~viv~Gvatd~CV~~Ta~da~~~G  238 (285)
                      +|++|+++|.+   .+.+.+|.|++++++++||+|++++...+|+|.++|+++|+++|+|||++|++||.+|+++|.++|
T Consensus       100 ~G~ei~~~l~~~~~~~~~~vi~K~~~~~~~~ySaF~~~~~~~~t~L~~~L~~~gi~~l~i~G~~t~~CV~~Ta~~a~~~g  179 (216)
T 3v8e_A          100 WGSQLVDQIMDQVVTKHIKIVDKGFLTDREYYSAFHDIWNFHKTDMNKYLEKHHTDEVYIVGVALEYXVKATAISAAELG  179 (216)
T ss_dssp             GGGSBCHHHHHHHHHHTCEEEEECCSTTSCCCSSSBCTTSCSBCSHHHHHHHTTCCEEEEEEECTTTHHHHHHHHHHHTT
T ss_pred             CccccCHhHHhhhccCccEEEECCccCCCccccccccCCcCCCchHHHHHHhCCCCEEEEEEeccccHHHHHHHHHHHCC
Confidence            99999999998   357899999999999999999887777799999999999999999999999999999999999999


Q ss_pred             CeEEEeCCCCccCCHH--HHHHHHHHHHHcCCEEEe
Q psy1561         239 YRTILIEDCCRGVDMD--DMERTRNTILENYGSCVQ  272 (285)
Q Consensus       239 ~~v~Vv~Da~~~~~~~--~~~~al~~m~~~g~~vit  272 (285)
                      |+|+|++|||++++++  .|+.+++.|+..|+.+++
T Consensus       180 ~~v~v~~Da~~~~~~~~~~~~~al~~m~~~Gv~i~~  215 (216)
T 3v8e_A          180 YKTTVLLDYTRPISDDPEVINKVKEELKAHNINVVD  215 (216)
T ss_dssp             CEEEEEEEEEECSSCCHHHHHHHHHHHHHTTCEEEC
T ss_pred             CEEEEeccccCCCCcccHHHHHHHHHHHHcCCEEeC
Confidence            9999999999999988  999999999999999875
>2wt9_A Nicotinamidase; hydrolase, pyrazinamidase; HET: GOL; 1.65A {Acinetobacter baumannii} PDB: 2wta_A* Back     alignment and structure
>3r2j_A Alpha/beta-hydrolase-like protein; nicotinamidase, cytoplasmic; 2.68A {Leishmania infantum} Back     alignment and structure
>3hb7_A Isochorismatase hydrolase; PS structural genomics, midwest center for structural genomics structure initiative; 2.30A {Alkaliphilus metalliredigens} Back     alignment and structure
>1im5_A 180AA long hypothetical pyrazinamidase/nicotinamidase; pyrazinamide, tuberculosis, PZA resistance, drug resistance, metal ION catalysis; 1.65A {Pyrococcus horikoshii} SCOP: c.33.1.3 PDB: 1ilw_A Back     alignment and structure
>3eef_A N-carbamoylsarcosine amidase related protein; structural genomics, protein structure initiative, midwest center for structural genomics; 2.35A {Thermoplasma acidophilum} Back     alignment and structure
>3o94_A Nicotinamidase; hydrolase; 1.60A {Streptococcus pneumoniae} PDB: 3o90_A 3o91_A* 3o92_A* 3o93_A* 3s2s_A Back     alignment and structure
>3hu5_A Isochorismatase family protein; structural genomics, protein structure INI NEW YORK structural genomix research consortium, nysgxrc; 1.50A {Desulfovibrio vulgaris} Back     alignment and structure
>3irv_A Cysteine hydrolase; structural genomics, PSI-2, protein structure initiative, CY hydrolase; 1.60A {Pseudomonas syringae PV} Back     alignment and structure
>3kl2_A Putative isochorismatase; structural genomics, unknown function, PSI-2, protein struct initiative; 2.30A {Streptomyces avermitilis} SCOP: c.33.1.0 Back     alignment and structure
>1j2r_A Hypothetical isochorismatase family protein YECD; parallel beta-sheet 3-2-1-4-5-6, alpha-beta-alpha motif, TET structural genomics; 1.30A {Escherichia coli} SCOP: c.33.1.3 Back     alignment and structure
>3tg2_A Vibriobactin-specific isochorismatase; hydrolase; HET: ISC PGE; 1.10A {Vibrio cholerae} PDB: 3tb4_A* Back     alignment and structure
>3ot4_A Putative isochorismatase; NICF, maleamate hydrolase, hydrol; 2.40A {Bordetella bronchiseptica} PDB: 3uao_A Back     alignment and structure
>1nf9_A Phenazine biosynthesis protein PHZD; isochorismatase, enzyme, phenazine pathway, hydrolase; HET: BOG; 1.50A {Pseudomonas aeruginosa} SCOP: c.33.1.3 PDB: 1nf8_A* 3r77_A* Back     alignment and structure
>1nba_A N-carbamoylsarcosine amidohydrolase; hydrolase(IN linear amides); 2.00A {Arthrobacter SP} SCOP: c.33.1.3 Back     alignment and structure
>3txy_A Isochorismatase family protein family; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.70A {Burkholderia thailandensis} SCOP: c.33.1.0 Back     alignment and structure
>3oqp_A Putative isochorismatase; catalytic triad, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; 1.22A {Burkholderia xenovorans} Back     alignment and structure
>3mcw_A Putative hydrolase; isochorismatase family, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.06A {Chromobacterium violaceum} Back     alignment and structure
>4h17_A Hydrolase, isochorismatase family; rossmann-like fold, structural genomics, joint center for ST genomics, JCSG; 1.60A {Pseudomonas putida KT2440} Back     alignment and structure
>2fq1_A Isochorismatase; ENTB, NRPS, multi-domain, ACP, hydrolase; 2.30A {Escherichia coli} Back     alignment and structure
>2a67_A Isochorismatase family protein; structural genomics, PSI, protein structure initiative, MIDW center for structural genomics, MCSG; 2.00A {Enterococcus faecalis} Back     alignment and structure
>1yac_A Ycacgp, YCAC gene product; unknown bacterial hydrolase, three layer alpha-beta-alpha SA topology, ENTB homolog, cshase homolog; 1.80A {Escherichia coli} SCOP: c.33.1.3 Back     alignment and structure
>2b34_A F35G2.2, MAR1 ribonuclease; isochorismatase family, structural genomics, PSI, protein structure initiative; 2.14A {Caenorhabditis elegans} Back     alignment and structure
>1x9g_A Putative MAR1; structural genomics, protein structure initiative, SGPP, PSI structural genomics of pathogenic protozoa consortium; 2.41A {Leishmania donovani} SCOP: c.33.1.3 PDB: 1xn4_A Back     alignment and structure
>1yzv_A Hypothetical protein; structural genomics, PSI, protein structure initiative, STRU genomics of pathogenic protozoa consortium, SGPP; 2.00A {Trypanosoma cruzi} Back     alignment and structure
>3nxa_A Protein S100-A16; S100 family, calcium binding protein, APO, EF-hand calcium binding proteins, S100 proteins, protein dynamics, binding protein; 2.10A {Homo sapiens} SCOP: a.39.1.0 PDB: 2l0u_A 2l0v_A 2l50_A 2l51_A Back     alignment and structure
>3zwh_A Protein S100-A4; Ca-binding protein-motor protein complex, S100 proteins, EF-; 1.94A {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 285
d1im5a_179 c.33.1.3 (A:) Pyrazinamidase/nicotinamidase {Archa 2e-18
d1im5a_179 c.33.1.3 (A:) Pyrazinamidase/nicotinamidase {Archa 0.003
d1nf9a_207 c.33.1.3 (A:) Phenazine biosynthesis protein PhzD 1e-15
d1j2ra_188 c.33.1.3 (A:) Hypothetical protein YecD {Escherich 5e-14
d1nbaa_253 c.33.1.3 (A:) N-carbamoylsarcosine amidohydrolase 2e-12
d1yaca_204 c.33.1.3 (A:) YcaC {Escherichia coli [TaxId: 562]} 4e-10
d1yaca_204 c.33.1.3 (A:) YcaC {Escherichia coli [TaxId: 562]} 0.004
d1x9ga_192 c.33.1.3 (A:) Ribonuclease MAR1 {Leishmania donova 7e-09
d1x9ga_192 c.33.1.3 (A:) Ribonuclease MAR1 {Leishmania donova 9e-04
d1ctda_34 a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus) 9e-05
d1nyaa_176 a.39.1.5 (A:) Calerythrin {Saccharopolyspora eryth 3e-04
d1jc2a_75 a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus) 0.001
d2opoa181 a.39.1.10 (A:6-86) Polcalcin Che a 3 {Pigweed (Che 0.001
d1fi5a_81 a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus), 0.002
>d1im5a_ c.33.1.3 (A:) Pyrazinamidase/nicotinamidase {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 179 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Isochorismatase-like hydrolases
superfamily: Isochorismatase-like hydrolases
family: Isochorismatase-like hydrolases
domain: Pyrazinamidase/nicotinamidase
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

 Score = 78.8 bits (193), Expect = 2e-18
 Identities = 47/167 (28%), Positives = 70/167 (41%), Gaps = 8/167 (4%)

Query: 106 WHPSNHVSFIDNIKLRKIHHTSTIQPEDAQTYDTVVFDGDTPIRQRLWPRHCVQDSWGAE 165
                    I  +               A              R   WPRHCVQ++ GAE
Sbjct: 20  LPVPEGDKIIPKVNEYIRKFKEKGALIVATRDWHPENHISFRERGGPWPRHCVQNTPGAE 79

Query: 166 LHKDLKVVDNAIKVYKGTDPEVDSYSVFWDNKKLKGTSLAKQLEAKKVTDVYVCGLAYDV 225
              DL   ++A+ + K T+P+ ++YS F          LAK L    V  VY+CG+A + 
Sbjct: 80  FVVDLP--EDAVIISKATEPDKEAYSGFEGTD------LAKILRGNGVKRVYICGVATEY 131

Query: 226 CVGASAIDAITIGYRTILIEDCCRGVDMDDMERTRNTILENYGSCVQ 272
           CV A+A+DA+  G+   L+ D  +G+  +D ER    +       VQ
Sbjct: 132 CVRATALDALKHGFEVYLLRDAVKGIKPEDEERALEEMKSRGIKIVQ 178
>d1im5a_ c.33.1.3 (A:) Pyrazinamidase/nicotinamidase {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 179 Back     information, alignment and structure
>d1nf9a_ c.33.1.3 (A:) Phenazine biosynthesis protein PhzD {Pseudomonas aeruginosa [TaxId: 287]} Length = 207 Back     information, alignment and structure
>d1j2ra_ c.33.1.3 (A:) Hypothetical protein YecD {Escherichia coli [TaxId: 562]} Length = 188 Back     information, alignment and structure
>d1nbaa_ c.33.1.3 (A:) N-carbamoylsarcosine amidohydrolase {Arthrobacter sp. [TaxId: 1667]} Length = 253 Back     information, alignment and structure
>d1yaca_ c.33.1.3 (A:) YcaC {Escherichia coli [TaxId: 562]} Length = 204 Back     information, alignment and structure
>d1yaca_ c.33.1.3 (A:) YcaC {Escherichia coli [TaxId: 562]} Length = 204 Back     information, alignment and structure
>d1x9ga_ c.33.1.3 (A:) Ribonuclease MAR1 {Leishmania donovani [TaxId: 5661]} Length = 192 Back     information, alignment and structure
>d1x9ga_ c.33.1.3 (A:) Ribonuclease MAR1 {Leishmania donovani [TaxId: 5661]} Length = 192 Back     information, alignment and structure
>d1ctda_ a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus) [TaxId: 9031]} Length = 34 Back     information, alignment and structure
>d1nyaa_ a.39.1.5 (A:) Calerythrin {Saccharopolyspora erythraea [TaxId: 1836]} Length = 176 Back     information, alignment and structure
>d1jc2a_ a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus) [TaxId: 9031]} Length = 75 Back     information, alignment and structure
>d2opoa1 a.39.1.10 (A:6-86) Polcalcin Che a 3 {Pigweed (Chenopodium album) [TaxId: 3559]} Length = 81 Back     information, alignment and structure
>d1fi5a_ a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus), cardiac isoform [TaxId: 9031]} Length = 81 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query285
d1nbaa_253 N-carbamoylsarcosine amidohydrolase {Arthrobacter 100.0
d1im5a_179 Pyrazinamidase/nicotinamidase {Archaeon Pyrococcus 100.0
d1j2ra_188 Hypothetical protein YecD {Escherichia coli [TaxId 100.0
d1nf9a_207 Phenazine biosynthesis protein PhzD {Pseudomonas a 100.0
d1yaca_204 YcaC {Escherichia coli [TaxId: 562]} 99.97
d1x9ga_192 Ribonuclease MAR1 {Leishmania donovani [TaxId: 566 99.95
d1ctda_34 Troponin C {Chicken (Gallus gallus) [TaxId: 9031]} 95.82
d2hf5a133 Troponin C {Human (Homo sapiens), cardiac isoform 93.52
d1k8ua_89 Calcyclin (S100) {Human (Homo sapiens), s100a6 [Ta 85.7
d1fw4a_65 Calmodulin {Cow (Bos taurus) [TaxId: 9913]} 85.37
d1psra_100 Calcyclin (S100) {Human (Homo sapiens), psoriasin 84.15
d1e8aa_87 Calcyclin (S100) {Human (Homo sapiens), calgranuli 82.73
d1tiza_67 Calmodulin-related protein T21P5.17 {Thale cress ( 82.28
d1ksoa_93 Calcyclin (S100) {Human (Homo sapiens), s100a3 [Ta 82.28
d2fcea161 Calmodulin {Cow (Bos taurus) [TaxId: 9913]} 81.73
d1oqpa_77 Caltractin (centrin 2) {Green algae (Chlamydomonas 80.88
d1a4pa_92 Calcyclin (S100) {Human (Homo sapiens), P11 s100a1 80.59
d1jc2a_75 Troponin C {Chicken (Gallus gallus) [TaxId: 9031]} 80.46
d1zfsa193 Calcyclin (S100) {Rat (Rattus norvegicus), s100a1 80.08
>d1nbaa_ c.33.1.3 (A:) N-carbamoylsarcosine amidohydrolase {Arthrobacter sp. [TaxId: 1667]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Isochorismatase-like hydrolases
superfamily: Isochorismatase-like hydrolases
family: Isochorismatase-like hydrolases
domain: N-carbamoylsarcosine amidohydrolase
species: Arthrobacter sp. [TaxId: 1667]

Probab=100.00  E-value=3.2e-40  Score=295.50  Aligned_cols=187  Identities=19%  Similarity=0.238  Sum_probs=161.9

Q ss_pred             CCceEEEEEeeeccCCc--ccCCCccchhhcccccceeccCCCCcchhchHHHHHHHHHHHhcCCCcchhhhhhhhhccc
Q psy1561           3 RPNSALLVIDVQNDFIS--GTLNLSQCSAKQNGLQALFRNDKGKIYALKDNELEETFAVFDLNQDGLIDREEFAFCWNRW   80 (285)
Q Consensus         3 ~~~~aLliiD~QndF~~--G~L~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w   80 (285)
                      ..|+|||||||||||++  |.+..++.                                                     
T Consensus        36 g~r~ALlvID~QndF~~p~~~~~~~~~-----------------------------------------------------   62 (253)
T d1nbaa_          36 GNRPAVIHIDLANAWTQPGHPFSCPGM-----------------------------------------------------   62 (253)
T ss_dssp             CSSEEEEEESCBHHHHSSSSTTCCSCH-----------------------------------------------------
T ss_pred             CCcceEEEEcCcccccCCCCcccccCH-----------------------------------------------------
Confidence            36899999999999995  66655542                                                     


Q ss_pred             hhhhHHHHHHHHhhcC--CCeEEEEeccCCCCCCchhhccccccCCCCCCCCCCCCCccceeeecCCCCcccccCCcccc
Q psy1561          81 IKVVIEPINKLLDTVN--FNAVFYSLDWHPSNHVSFIDNIKLRKIHHTSTIQPEDAQTYDTVVFDGDTPIRQRLWPRHCV  158 (285)
Q Consensus        81 i~~iv~~I~~L~~~~~--~~~Ii~T~D~Hp~~h~sF~~~~~~~~~~p~~~i~~~~~~~~~~~~~~~~~~~~~~~WP~Hcv  158 (285)
                       .+++++|++|++.+|  ..+||+|+++|++++.+++.+..+                          ......++.||.
T Consensus        63 -~~iv~~i~~Li~aaR~~gipVI~~~~~~~~~~~~~~~~~~~--------------------------~~~~~~~~~~~~  115 (253)
T d1nbaa_          63 -ETIIPNVQRINEAARAKGVPVFYTTNVYRNRDASSGTNDMG--------------------------LWYSKIPTETLP  115 (253)
T ss_dssp             -HHHHHHHHHHHHHHHHHTCCEEEEEECBSCCCTTSTTCSCG--------------------------GGGGTSCGGGCB
T ss_pred             -HHHHHHHHHHHHHHHHcCCCEEEEEeccCCCcccccccccc--------------------------ccccccCccccC
Confidence             248899999999875  469999999998877655432110                          011234567889


Q ss_pred             CCCCCccccccccccccceecccCCCCCCCccccccccccCCCccHHHHHHhCCccEEEEEcccCchhHHHHHHHHHhCC
Q psy1561         159 QDSWGAELHKDLKVVDNAIKVYKGTDPEVDSYSVFWDNKKLKGTSLAKQLEAKKVTDVYVCGLAYDVCVGASAIDAITIG  238 (285)
Q Consensus       159 ~Gt~G~el~~eL~~~~~~~vi~K~~~~~~e~ySaF~~~~~~~~t~L~~~Lr~~gi~~viv~Gvatd~CV~~Ta~da~~~G  238 (285)
                      .|++|++++++|.+.++|.+|.|+      +||+|+      +|+|+.+|+++||++|||||++||+||.+|+++|+++|
T Consensus       116 ~gt~ga~i~~~l~p~~~d~vi~K~------~~SaF~------~T~L~~~Lr~~gI~~liv~Gv~Td~CV~~Ta~dA~~~G  183 (253)
T d1nbaa_         116 ADSYWAQIDDRIAPADGEVVIEKN------RASAFP------GTNLELFLTSNRIDTLIVTGATAAGCVRHTVEDAIAKG  183 (253)
T ss_dssp             TTSGGGSBCGGGCCCTTCEEEEES------SSSSST------TSSHHHHHHHTTCCEEEEEEECTTTHHHHHHHHHHHHT
T ss_pred             CCCcccccccccCCCCCCeeeecc------cccccc------CccHHHHHhhhccceEEEEeecccchHHHHHHHHHHCC
Confidence            999999999999999999999998      699997      99999999999999999999999999999999999999


Q ss_pred             CeEEEeCCCCccCCHHHHHHHHHHHHHcCCEEEeHHHHHHHhh
Q psy1561         239 YRTILIEDCCRGVDMDDMERTRNTILENYGSCVQSDEVLGQHE  281 (285)
Q Consensus       239 ~~v~Vv~Da~~~~~~~~~~~al~~m~~~g~~vits~e~i~~l~  281 (285)
                      |+|+|++|||++++++.|+.+|+.|...++.|++++++++.|+
T Consensus       184 y~V~Vv~DA~as~~~e~h~~aL~~m~~~~g~V~~t~eil~~L~  226 (253)
T d1nbaa_         184 FRPIIPRETIGDRVPGVVQWNLYDIDNKFGDVESTDSVVQYLD  226 (253)
T ss_dssp             CEEEEEGGGEECSSSSHHHHHHHHHHHHTCEEECHHHHHHHHH
T ss_pred             CEEEEeccccCCCCHHHHHHHHHHHHhcCCEEecHHHHHHHHH
Confidence            9999999999999999999999999999999999999999885
>d1im5a_ c.33.1.3 (A:) Pyrazinamidase/nicotinamidase {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1j2ra_ c.33.1.3 (A:) Hypothetical protein YecD {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1nf9a_ c.33.1.3 (A:) Phenazine biosynthesis protein PhzD {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1yaca_ c.33.1.3 (A:) YcaC {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1x9ga_ c.33.1.3 (A:) Ribonuclease MAR1 {Leishmania donovani [TaxId: 5661]} Back     information, alignment and structure
>d1ctda_ a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus) [TaxId: 9031]} Back     information, alignment and structure
>d2hf5a1 a.39.1.5 (A:81-113) Troponin C {Human (Homo sapiens), cardiac isoform [TaxId: 9606]} Back     information, alignment and structure
>d1k8ua_ a.39.1.2 (A:) Calcyclin (S100) {Human (Homo sapiens), s100a6 [TaxId: 9606]} Back     information, alignment and structure
>d1fw4a_ a.39.1.5 (A:) Calmodulin {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1psra_ a.39.1.2 (A:) Calcyclin (S100) {Human (Homo sapiens), psoriasin s100a7 [TaxId: 9606]} Back     information, alignment and structure
>d1e8aa_ a.39.1.2 (A:) Calcyclin (S100) {Human (Homo sapiens), calgranulin C, s100a12 [TaxId: 9606]} Back     information, alignment and structure
>d1tiza_ a.39.1.5 (A:) Calmodulin-related protein T21P5.17 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1ksoa_ a.39.1.2 (A:) Calcyclin (S100) {Human (Homo sapiens), s100a3 [TaxId: 9606]} Back     information, alignment and structure
>d2fcea1 a.39.1.5 (A:84-144) Calmodulin {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1oqpa_ a.39.1.5 (A:) Caltractin (centrin 2) {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} Back     information, alignment and structure
>d1a4pa_ a.39.1.2 (A:) Calcyclin (S100) {Human (Homo sapiens), P11 s100a10, calpactin [TaxId: 9606]} Back     information, alignment and structure
>d1jc2a_ a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus) [TaxId: 9031]} Back     information, alignment and structure
>d1zfsa1 a.39.1.2 (A:1-93) Calcyclin (S100) {Rat (Rattus norvegicus), s100a1 [TaxId: 10116]} Back     information, alignment and structure