Psyllid ID: psy15646

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------39
PATIKPIPTGPPPQLSSTTPTSSNATKIPPTSTSTADVKSFGSPAQLTSSPLGVSTTGTANSTPIKPSANTSLGGQLNTSQIGGNLNTSGQIGGPLNTSGQLNSSQTGSGQTTPHKFQIQMPHESLSVIKKQLETSPLIKQSLEQANESDDETPANDHDPLPDFKPIIPLPDEVPVTTGEENETVLFEQRAKLYRFVDKEWKERGVGQLKLLKNKDTGKVRLLMRRDIVHKICANHFLHQDMELKPMPNTKQAYIWFAQDYADEVVSDEQLCAKFKLPEDAERFRSVTTGEENETVLFEQRAKLYRFVDKEWKERGVGQLKLLKNKDTGKVRLLMRRDIVHKICANHFLHQDMELKPMSNTKQAYIWFAQDYADEVVSDRFDSGNCNC
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEEEEEcccccEEEEEEEEEEEEEcccccEEEEEEEcccccEEEccccccccEEEEccccccEEEEEEEccccccHHHHHHHHccccHHHHHHHHHcccccccHHHHHHcccEEEEEcccccEEEEEEEEEEEEEcccccEEEEEEEcccccEEEccccccccEEEEccccccEEEEEEcccccHHHHHHHccccccc
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEcEEEcccccEEEEcccccHHHHHHHcEEEEEccHHHHHHcccccEEEEEcccccEEEEEEEcccEEEEEEccEEccccEEccccccccEEEEEEcccccccccHHHHEEEcccHHHHHHHHHHHccHHHHHHHHHHHHHHHHccHHHHHHcccccEEEEEcccccEEEEEEEcHcEEEEEEcEEEccccEEccccccccEEEEEEccccHHHEEEEEccccccc
patikpiptgpppqlssttptssnatkipptststadvksfgspaqltssplgvsttgtanstpikpsantslggqlntsqiggnlntsgqiggplntsgqlnssqtgsgqttphkfqiqmpHESLSVIKKQLETSPLIKQSLEQanesddetpandhdplpdfkpiiplpdevpvttgeeneTVLFEQRAKLYRFVDKEwkergvgqlkllknkdtgkvRLLMRRDIVHKICANhflhqdmelkpmpntkQAYIWFAQDYadevvsdeqlcakfklpedaerfrsvttgeeneTVLFEQRAKLYRFVDKEwkergvgqlkllknkdtgkvRLLMRRDIVHKICANhflhqdmelkpmsntkQAYIWFAQDYADEvvsdrfdsgncnc
patikpiptgpppqlssttptssnatkippTSTSTADVKSFGspaqltssplgvsTTGTANSTPIKPSANTSLGGQLNTSQIGGNLNTSGQIGGPLNTSGQLNSSQTGSGQTTPHKFQIQMPHESLSVIKKQLETSPLIKQSLEQANESDDETPANDHDPLPDFKPIIPLPDEVPVTTGEENETVLFEQRAKLYRFVdkewkergvgqlkllknkdtgkvrlLMRRDIVHKICANHFlhqdmelkpmPNTKQAYIWFAQDYADEVVSDEQLCAKfklpedaerfrsvttgeenetvlfeqrAKLYRFVdkewkergvgqlkllknkdtgkvrlLMRRDIVHKICANHFlhqdmelkpMSNTKQAYIWFAQDYADEVVSDRfdsgncnc
PATIKPIptgpppqlssttptssNATKIPPTSTSTADVKSFGSPAQLTSSPLGVSTTGTANSTPIKPSANTSLGGQLNTSQIGGNLNTSGQIGGPLNTSGQLNSSQTGSGQTTPHKFQIQMPHESLSVIKKQLETSPLIKQSLEQANESDDETPANDHDPLPDFKPIIPLPDEVPVTTGEENETVLFEQRAKLYRFVDKEWKERGVGQLKLLKNKDTGKVRLLMRRDIVHKICANHFLHQDMELKPMPNTKQAYIWFAQDYADEVVSDEQLCAKFKLPEDAERFRSVTTGEENETVLFEQRAKLYRFVDKEWKERGVGQLKLLKNKDTGKVRLLMRRDIVHKICANHFLHQDMELKPMSNTKQAYIWFAQDYADEVVSDRFDSGNCNC
*************************************************************************************************************************************************************************************NETVLFEQRAKLYRFVDKEWKERGVGQLKLLKNKDTGKVRLLMRRDIVHKICANHFLHQDMELKPMPNTKQAYIWFAQDYADEVVSDEQLCAKFKLPEDAERFRSVTTGEENETVLFEQRAKLYRFVDKEWKERGVGQLKLLKNKDTGKVRLLMRRDIVHKICANHFLHQDMELKPMSNTKQAYIWFAQDYADEVVS**********
************************************************************************************************************************************************************************************ENETVLFEQRAKLYRFVDKEWKERGVGQLKLLKNKDTGKVRLLMRRDIVHKICANHFLHQDMELKPMPNTKQAYIWFAQDYADEVVSDEQLCAKFKLPEDAERFRSVTTGEENETVLFEQRAKLYRFVDKEWKERGVGQLKLLKNKDTGKVRLLMRRDIVHKICANHFLHQDMELKPMSNTKQAYIWFAQDYADEVVSDRFDSGNC**
***************************************SFGSPAQLTSSPLGVSTTGTANSTPIKPSANTSLGGQLNTSQIGGNLNTSGQIGGPLNTSG****************FQIQMPHESLSVIKKQLETSPLIKQSL*************DHDPLPDFKPIIPLPDEVPVTTGEENETVLFEQRAKLYRFVDKEWKERGVGQLKLLKNKDTGKVRLLMRRDIVHKICANHFLHQDMELKPMPNTKQAYIWFAQDYADEVVSDEQLCAKFKLPEDAERFRSVTTGEENETVLFEQRAKLYRFVDKEWKERGVGQLKLLKNKDTGKVRLLMRRDIVHKICANHFLHQDMELKPMSNTKQAYIWFAQDYADEVVSD*********
***************************************************************************************************************************************************************PLPDFKPIIPLPDEVPVTTGEENETVLFEQRAKLYRFVDKEWKERGVGQLKLLKNKDTGKVRLLMRRDIVHKICANHFLHQDMELKPMPNTKQAYIWFAQDYADEVVSDEQLCAKFKLPEDAERFRSVTTGEENETVLFEQRAKLYRFVDKEWKERGVGQLKLLKNKDTGKVRLLMRRDIVHKICANHFLHQDMELKPMSNTKQAYIWFAQDYADEVVSDRFDSGN**C
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooo
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PATIKPIPTGPPPQLSSTTPTSSNATKIPPTSTSTADVKSFGSPAQLTSSPLGVSTTGTANSTPIKPSANTSLGGQLNTSQIGGNLNTSGQIGGPLNTSGQLNSSQTGSGQTTPHKFQIQMPHESLSVIKKQLETSPLIKQSLEQANESDDETPANDHDPLPDFKPIIPLPDEVPVTTGEENETVLFEQRAKLYRFVDKEWKERGVGQLKLLKNKDTGKVRLLMRRDIVHKICANHFLHQDMELKPMPNTKQAYIWFAQDYADEVVSDEQLCAKFKLPEDAERFRSVTTGEENETVLFEQRAKLYRFVDKEWKERGVGQLKLLKNKDTGKVRLLMRRDIVHKICANHFLHQDMELKPMSNTKQAYIWFAQDYADEVVSDRFDSGNCNC
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query388 2.2.26 [Sep-21-2011]
Q9ERU9 3053 E3 SUMO-protein ligase Ra yes N/A 0.391 0.049 0.468 1e-35
P49792 3224 E3 SUMO-protein ligase Ra yes N/A 0.345 0.041 0.5 2e-35
A6NKT7 1758 RanBP2-like and GRIP doma no N/A 0.682 0.150 0.344 2e-31
O14715 1765 RANBP2-like and GRIP doma no N/A 0.685 0.150 0.338 2e-31
Q99666 1765 RANBP2-like and GRIP doma no N/A 0.685 0.150 0.335 3e-31
P0DJD0 1748 RANBP2-like and GRIP doma no N/A 0.688 0.152 0.343 6e-31
P0DJD1 1756 RANBP2-like and GRIP doma no N/A 0.688 0.152 0.343 6e-31
Q7Z3J3 1758 RanBP2-like and GRIP doma no N/A 0.690 0.152 0.337 1e-30
P48820 1085 E3 SUMO-protein ligase Ra no N/A 0.317 0.113 0.480 9e-30
Q3T0M7206 Ran-specific GTPase-activ no N/A 0.347 0.655 0.46 8e-27
>sp|Q9ERU9|RBP2_MOUSE E3 SUMO-protein ligase RanBP2 OS=Mus musculus GN=Ranbp2 PE=1 SV=2 Back     alignment and function desciption
 Score =  150 bits (379), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 75/160 (46%), Positives = 107/160 (66%), Gaps = 8/160 (5%)

Query: 144  EQANESDDETPANDH----DPLPDFKPIIPLPDEVPVTTGEENETVLFEQRAKLYRF--V 197
            E AN+S +    + H    D  P F+P++PLPD++ V TGEE+E   F  RAKL+RF   
Sbjct: 1142 ELANKSHETDGGSAHGDEEDDGPHFEPVVPLPDKIEVKTGEEDEEEFFCNRAKLFRFDGE 1201

Query: 198  DKEWKERGVGQLKLLKNKDTGKVRLLMRRDIVHKICANHFLHQDMELKPMPNTKQAYIWF 257
             KEWKERG+G +K+L++K +GK+RLLMRR+ V KICANH++  DM+L P   + ++++W 
Sbjct: 1202 SKEWKERGIGNVKILRHKTSGKIRLLMRREQVLKICANHYISPDMKLTPNAGSDRSFVWH 1261

Query: 258  AQDYADEVVSDEQLCAKFKLPEDAERFRSVTTGEENETVL 297
            A DYADE+   EQL  +FK PE+A  F+     EE + +L
Sbjct: 1262 ALDYADELPKPEQLAIRFKTPEEAALFK--CKFEEAQNIL 1299
E3 SUMO-protein ligase which facilitates SUMO1 and SUMO2 conjugation by UBE2I. Involved in transport factor (Ran-GTP, karyopherin)-mediated protein import via the F-G repeat-containing domain which acts as a docking site for substrates. Could also have isomerase or chaperone activity and may bind RNA or DNA. Component of the nuclear export pathway. Specific docking site for the nuclear export factor exportin-1.
Mus musculus (taxid: 10090)
EC: 5EC: .EC: 2EC: .EC: 1EC: .EC: 8
>sp|P49792|RBP2_HUMAN E3 SUMO-protein ligase RanBP2 OS=Homo sapiens GN=RANBP2 PE=1 SV=2 Back     alignment and function description
>sp|A6NKT7|RGPD3_HUMAN RanBP2-like and GRIP domain-containing protein 3 OS=Homo sapiens GN=RGPD3 PE=2 SV=2 Back     alignment and function description
>sp|O14715|RGPD8_HUMAN RANBP2-like and GRIP domain-containing protein 8 OS=Homo sapiens GN=RGPD8 PE=1 SV=2 Back     alignment and function description
>sp|Q99666|RGPD5_HUMAN RANBP2-like and GRIP domain-containing protein 5/6 OS=Homo sapiens GN=RGPD5 PE=1 SV=3 Back     alignment and function description
>sp|P0DJD0|RGPD1_HUMAN RANBP2-like and GRIP domain-containing protein 1 OS=Homo sapiens GN=RGPD1 PE=2 SV=1 Back     alignment and function description
>sp|P0DJD1|RGPD2_HUMAN RANBP2-like and GRIP domain-containing protein 2 OS=Homo sapiens GN=RGPD2 PE=2 SV=1 Back     alignment and function description
>sp|Q7Z3J3|RGPD4_HUMAN RanBP2-like and GRIP domain-containing protein 4 OS=Homo sapiens GN=RGPD4 PE=2 SV=3 Back     alignment and function description
>sp|P48820|RBP2_BOVIN E3 SUMO-protein ligase RanBP2 (Fragment) OS=Bos taurus GN=RANBP2 PE=2 SV=2 Back     alignment and function description
>sp|Q3T0M7|RANG_BOVIN Ran-specific GTPase-activating protein OS=Bos taurus GN=RANBP1 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query388
156546701 2907 PREDICTED: hypothetical protein LOC10012 0.461 0.061 0.515 2e-46
357605898 2799 putative ran-binding protein [Danaus ple 0.623 0.086 0.416 2e-46
91079160 2779 PREDICTED: similar to ran-binding protei 0.407 0.056 0.586 2e-45
328717652 2308 PREDICTED: e3 SUMO-protein ligase RanBP2 0.505 0.084 0.463 4e-44
307172622 2907 E3 SUMO-protein ligase RanBP2 [Camponotu 0.373 0.049 0.591 5e-42
307201149 2969 E3 SUMO-protein ligase RanBP2 [Harpegnat 0.579 0.075 0.409 5e-42
322782969 2855 hypothetical protein SINV_12257 [Solenop 0.371 0.050 0.579 6e-42
350408484 2846 PREDICTED: hypothetical protein LOC10074 0.463 0.063 0.474 6e-41
328786667 2830 PREDICTED: LOW QUALITY PROTEIN: e3 SUMO- 0.448 0.061 0.455 7e-41
240991855 2674 ran-binding protein (RanBP), putative [I 0.314 0.045 0.650 1e-40
>gi|156546701|ref|XP_001604378.1| PREDICTED: hypothetical protein LOC100120774 [Nasonia vitripennis] Back     alignment and taxonomy information
 Score =  192 bits (489), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 101/196 (51%), Positives = 127/196 (64%), Gaps = 17/196 (8%)

Query: 106  QTGSGQTTPHKFQIQMPHESL---SVIKKQLE-----TSPLIKQSLEQ--------ANES 149
            Q    +  PH +QI MP +     +VI   L      +SP+IK    Q        +  S
Sbjct: 1196 QFQGNEQVPHSYQISMPSQPTIPTTVILPPLSATLTISSPIIKPQDNQNSSIVSTGSRHS 1255

Query: 150  DDETPANDHDPLPDFKPIIPLPDEVPVTTGEENETVLFEQRAKLYRFVDKEWKERGVGQL 209
              +    +HDP+PDF PIIPLPDEVPVTTGEENE  L+  RAKL+RFVDKEWKERG+G +
Sbjct: 1256 SSDVTEVEHDPIPDFAPIIPLPDEVPVTTGEENEEELYCARAKLFRFVDKEWKERGIGNV 1315

Query: 210  KLLKNKDTGKVRLLMRRDIVHKICANHFLHQDMELKPMPNTKQAYIWFAQDYADEVVSDE 269
            KLLKN + GK+RLLMRR+ V KICANH L +DMEL  M N ++AYIW A D+ADE +  E
Sbjct: 1316 KLLKNTE-GKIRLLMRREQVLKICANHMLRKDMELTMMKNNEKAYIWVANDFADEELRLE 1374

Query: 270  QLCAKFKLPEDAERFR 285
            +LC +FK  E+A  F+
Sbjct: 1375 KLCIRFKTVEEAASFK 1390

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|357605898|gb|EHJ64822.1| putative ran-binding protein [Danaus plexippus] Back     alignment and taxonomy information
>gi|91079160|ref|XP_967064.1| PREDICTED: similar to ran-binding protein [Tribolium castaneum] gi|270003619|gb|EFA00067.1| hypothetical protein TcasGA2_TC002881 [Tribolium castaneum] Back     alignment and taxonomy information
>gi|328717652|ref|XP_001952671.2| PREDICTED: e3 SUMO-protein ligase RanBP2-like [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|307172622|gb|EFN63981.1| E3 SUMO-protein ligase RanBP2 [Camponotus floridanus] Back     alignment and taxonomy information
>gi|307201149|gb|EFN81060.1| E3 SUMO-protein ligase RanBP2 [Harpegnathos saltator] Back     alignment and taxonomy information
>gi|322782969|gb|EFZ10687.1| hypothetical protein SINV_12257 [Solenopsis invicta] Back     alignment and taxonomy information
>gi|350408484|ref|XP_003488418.1| PREDICTED: hypothetical protein LOC100740739 [Bombus impatiens] Back     alignment and taxonomy information
>gi|328786667|ref|XP_001122024.2| PREDICTED: LOW QUALITY PROTEIN: e3 SUMO-protein ligase RanBP2 [Apis mellifera] Back     alignment and taxonomy information
>gi|240991855|ref|XP_002404439.1| ran-binding protein (RanBP), putative [Ixodes scapularis] gi|215491566|gb|EEC01207.1| ran-binding protein (RanBP), putative [Ixodes scapularis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query388
RGD|1560047 3055 Ranbp2 "RAN binding protein 2" 0.641 0.081 0.369 3.7e-59
FB|FBgn0039302 2695 Nup358 "Nucleoporin 358kD" [Dr 0.613 0.088 0.388 9.1e-59
UNIPROTKB|P49792 3224 RANBP2 "E3 SUMO-protein ligase 0.652 0.078 0.364 3.8e-58
MGI|MGI:894323 3053 Ranbp2 "RAN binding protein 2" 0.641 0.081 0.366 8.8e-58
UNIPROTKB|F1PA81 3047 F1PA81 "Uncharacterized protei 0.389 0.049 0.474 2.3e-57
UNIPROTKB|F1MXS1 3035 RANBP2 "Putative peptidyl-prol 0.634 0.081 0.381 1.2e-56
UNIPROTKB|E9PGT0 2248 RANBP2 "Putative peptidyl-prol 0.646 0.111 0.369 1.2e-56
UNIPROTKB|F1SU29 2808 RANBP2 "Uncharacterized protei 0.634 0.087 0.371 5.1e-55
UNIPROTKB|P0DJD0 1748 RGPD1 "RANBP2-like and GRIP do 0.646 0.143 0.358 5.8e-54
UNIPROTKB|F8VYC4 1756 RGPD1 "RANBP2-like and GRIP do 0.646 0.142 0.358 5.9e-54
RGD|1560047 Ranbp2 "RAN binding protein 2" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
 Score = 396 (144.5 bits), Expect = 3.7e-59, Sum P(2) = 3.7e-59
 Identities = 98/265 (36%), Positives = 145/265 (54%)

Query:    40 SFGSPAQLTSSPLGVSTTGTANSTPIKPSANTSLGGQLNTSQIGGNLNTSGQIGGPLNTS 99
             +F SP  +T SP    +T  +NS  +     TS    L      G    S Q GG  NT 
Sbjct:  1044 TFSSPQVVTQSP----STAYSNSESLL-GLLTS-DKPLQGDGYSGLKPISAQTGGSRNTF 1097

Query:   100 --GQLNSSQTGSGQTTPHKFQIQMPHESLSVIK--KQLETSPLIKQSLEQANESDDETPA 155
               G  ++     G      F  +   +  +     K + T+P   +   +++E+D  +  
Sbjct:  1098 SFGSKSTLTENMGPNQQKNFGFRRSDDMFTFHGPGKSIFTTPT-SELANKSHETDGGSAH 1156

Query:   156 NDH-DPLPDFKPIIPLPDEVPVTTGEENETVLFEQRAKLYRF--VDKEWKERGVGQLKLL 212
              D  D  P F+P++PLPD++ V TGEE+E   F  RAKL+RF    KEWKERG+G +K+L
Sbjct:  1157 GDEEDDGPHFEPVVPLPDKIEVKTGEEDEEEFFCNRAKLFRFDGESKEWKERGIGNVKIL 1216

Query:   213 KNKDTGKVRLLMRRDIVHKICANHFLHQDMELKPMPNTKQAYIWFAQDYADEVVSDEQLC 272
             ++K +GK+RLLMRR+ V KICANH++  DM+L P   + ++++W A DYADE+   EQL 
Sbjct:  1217 RHKTSGKIRLLMRREQVLKICANHYISPDMKLTPNAGSDRSFVWHALDYADELPKPEQLA 1276

Query:   273 AKFKLPEDAERFRSVTTGEENETVL 297
              +FK PE+A  F+     EE + +L
Sbjct:  1277 IRFKTPEEAALFKCKF--EEAQNIL 1299
GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=IEA
GO:0005515 "protein binding" evidence=IPI
GO:0005622 "intracellular" evidence=IEA
GO:0005643 "nuclear pore" evidence=ISO
GO:0006457 "protein folding" evidence=IEA
GO:0008270 "zinc ion binding" evidence=IEA
GO:0016925 "protein sumoylation" evidence=ISO
GO:0031965 "nuclear membrane" evidence=ISO
GO:0042405 "nuclear inclusion body" evidence=ISO
GO:0044615 "nuclear pore nuclear basket" evidence=ISO
GO:0046907 "intracellular transport" evidence=IEA
FB|FBgn0039302 Nup358 "Nucleoporin 358kD" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|P49792 RANBP2 "E3 SUMO-protein ligase RanBP2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:894323 Ranbp2 "RAN binding protein 2" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F1PA81 F1PA81 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1MXS1 RANBP2 "Putative peptidyl-prolyl cis-trans isomerase" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E9PGT0 RANBP2 "Putative peptidyl-prolyl cis-trans isomerase" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1SU29 RANBP2 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|P0DJD0 RGPD1 "RANBP2-like and GRIP domain-containing protein 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F8VYC4 RGPD1 "RANBP2-like and GRIP domain-containing protein 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query388
cd13171112 cd13171, RanBD1_RanBP2_insect-like, Ran-binding pr 6e-57
cd13176116 cd13176, RanBD1_RanBD3_RanBP2_mammal-like, Ran-bin 7e-51
cd00835111 cd00835, RanBD_family, Ran-binding domain 1e-48
cd13171112 cd13171, RanBD1_RanBP2_insect-like, Ran-binding pr 3e-47
smart00160130 smart00160, RanBD, Ran-binding domain 1e-46
cd13179126 cd13179, RanBD_RanBP1, Ran-binding domain 2e-45
pfam00638122 pfam00638, Ran_BP1, RanBP1 domain 7e-43
cd13176116 cd13176, RanBD1_RanBD3_RanBP2_mammal-like, Ran-bin 2e-42
cd00835111 cd00835, RanBD_family, Ran-binding domain 3e-40
cd13172113 cd13172, RanBD2_RanBP2_insect-like, Ran-binding pr 3e-39
cd13179126 cd13179, RanBD_RanBP1, Ran-binding domain 1e-38
pfam00638122 pfam00638, Ran_BP1, RanBP1 domain 3e-37
cd13177117 cd13177, RanBD2_RanBP2_mammal-like, Ran-binding pr 2e-36
smart00160130 smart00160, RanBD, Ran-binding domain 3e-36
cd13173110 cd13173, RanBD3_RanBP2_insect-like, Ran-binding pr 7e-36
cd13178117 cd13178, RanBD4_RanBP2_mammal-like, Ran-binding pr 7e-33
cd13172113 cd13172, RanBD2_RanBP2_insect-like, Ran-binding pr 1e-32
cd13173110 cd13173, RanBD3_RanBP2_insect-like, Ran-binding pr 2e-32
cd13174113 cd13174, RanBD4_RanBP2_insect-like, Ran-binding pr 9e-31
cd13177117 cd13177, RanBD2_RanBP2_mammal-like, Ran-binding pr 4e-29
cd13178117 cd13178, RanBD4_RanBP2_mammal-like, Ran-binding pr 3e-28
cd13174113 cd13174, RanBD4_RanBP2_insect-like, Ran-binding pr 5e-26
COG5171211 COG5171, YRB1, Ran GTPase-activating protein (Ran- 6e-26
COG5171211 COG5171, YRB1, Ran GTPase-activating protein (Ran- 1e-21
cd13175106 cd13175, RanBD5_RanBP2_insect-like, Ran-binding pr 2e-15
cd13181111 cd13181, RanBD_NUP2, Nucleoporin 2 Ran-binding dom 7e-13
cd13175106 cd13175, RanBD5_RanBP2_insect-like, Ran-binding pr 1e-12
cd13181111 cd13181, RanBD_NUP2, Nucleoporin 2 Ran-binding dom 1e-12
cd13170109 cd13170, RanBD_NUP50, Nucleoporin 50 Ran-binding d 1e-12
cd13170109 cd13170, RanBD_NUP50, Nucleoporin 50 Ran-binding d 1e-12
cd13169112 cd13169, RanBD_NUP50_plant, Ran-binding protein 2, 7e-10
cd13169112 cd13169, RanBD_NUP50_plant, Ran-binding protein 2, 1e-08
pfam05109830 pfam05109, Herpes_BLLF1, Herpes virus major outer 2e-04
>gnl|CDD|241325 cd13171, RanBD1_RanBP2_insect-like, Ran-binding protein 2, Ran binding domain repeat 1 Back     alignment and domain information 
 Score =  181 bits (461), Expect = 6e-57
 Identities = 71/112 (63%), Positives = 85/112 (75%)

Query: 183 ETVLFEQRAKLYRFVDKEWKERGVGQLKLLKNKDTGKVRLLMRRDIVHKICANHFLHQDM 242
           E VLF  RAKL+R+VDKEWKERG+G LK+LKN  TGKVRLLMRR+ VHK+CANHF+ +DM
Sbjct: 1   EEVLFCARAKLFRYVDKEWKERGIGNLKILKNPATGKVRLLMRREQVHKVCANHFITKDM 60

Query: 243 ELKPMPNTKQAYIWFAQDYADEVVSDEQLCAKFKLPEDAERFRSVTTGEENE 294
           EL PM    +AYIW A D+ADEVV  E+LC +FK  E A+ FR V T  + E
Sbjct: 61  ELTPMDKEDKAYIWAANDFADEVVVLEKLCVRFKTVELAKEFRDVFTKAKKE 112

RanBP2 (also called E3 SUMO-protein ligase RanBP2, 358 kDa nucleoporin, and nuclear pore complex (NPC) protein Nup358) is a giant nucleoporin that localizes to the cytosolic face of the NPC. RanBP2 contains a leucine-rich region, 8 zinc-finger motifs, a cyclophilin A homologous domain, and 4 RanBDs. Ran is a Ras-like nuclear small GTPase, which regulates receptor-mediated transport between the nucleus and the cytoplasm. RanGTP hydrolysis is stimulated by RanGAP together with the Ran-binding domain containing acessory proteins RanBP1 and RanBP2. These accessory proteins stabilize the active GTP-bound form of Ran. All eukaryotic cells contain RanBP1, but in vertebrates however, the main RanBP seems to be RanBP2. There is no RanBP2 ortholog in yeast. Transport complex disassembly is accomplished by a small ubiquitin-related modifier-1 (SUMO-1)-modified version of RanGAP that is bound to RanBP2. RanBP1 acts as a second line of defense against exported RanGTP-importin complexes which have escaped from dissociation by RanBP2. RanBP2 also interacts with the importin subunit beta-1. RabBD shares structural similarity to the PH domain, but lacks detectable sequence similarity. The members here include insects and nematodes. The first RanBD is present in this hierarchy. Length = 112
>gnl|CDD|241330 cd13176, RanBD1_RanBD3_RanBP2_mammal-like, Ran-binding protein 2, Ran binding domain repeats 1 and 3 Back     alignment and domain information
>gnl|CDD|241232 cd00835, RanBD_family, Ran-binding domain Back     alignment and domain information
>gnl|CDD|241325 cd13171, RanBD1_RanBP2_insect-like, Ran-binding protein 2, Ran binding domain repeat 1 Back     alignment and domain information
>gnl|CDD|197549 smart00160, RanBD, Ran-binding domain Back     alignment and domain information
>gnl|CDD|241333 cd13179, RanBD_RanBP1, Ran-binding domain Back     alignment and domain information
>gnl|CDD|109686 pfam00638, Ran_BP1, RanBP1 domain Back     alignment and domain information
>gnl|CDD|241330 cd13176, RanBD1_RanBD3_RanBP2_mammal-like, Ran-binding protein 2, Ran binding domain repeats 1 and 3 Back     alignment and domain information
>gnl|CDD|241232 cd00835, RanBD_family, Ran-binding domain Back     alignment and domain information
>gnl|CDD|241326 cd13172, RanBD2_RanBP2_insect-like, Ran-binding protein 2, Ran binding domain repeat 2 Back     alignment and domain information
>gnl|CDD|241333 cd13179, RanBD_RanBP1, Ran-binding domain Back     alignment and domain information
>gnl|CDD|109686 pfam00638, Ran_BP1, RanBP1 domain Back     alignment and domain information
>gnl|CDD|241331 cd13177, RanBD2_RanBP2_mammal-like, Ran-binding protein 2, Ran binding domain repeats 2 Back     alignment and domain information
>gnl|CDD|197549 smart00160, RanBD, Ran-binding domain Back     alignment and domain information
>gnl|CDD|241327 cd13173, RanBD3_RanBP2_insect-like, Ran-binding protein 2, Ran binding domain repeat 3 Back     alignment and domain information
>gnl|CDD|241332 cd13178, RanBD4_RanBP2_mammal-like, Ran-binding protein 2, Ran binding domain repeats 2 and 4 Back     alignment and domain information
>gnl|CDD|241326 cd13172, RanBD2_RanBP2_insect-like, Ran-binding protein 2, Ran binding domain repeat 2 Back     alignment and domain information
>gnl|CDD|241327 cd13173, RanBD3_RanBP2_insect-like, Ran-binding protein 2, Ran binding domain repeat 3 Back     alignment and domain information
>gnl|CDD|241328 cd13174, RanBD4_RanBP2_insect-like, Ran-binding protein 2, Ran binding domain repeat 4 Back     alignment and domain information
>gnl|CDD|241331 cd13177, RanBD2_RanBP2_mammal-like, Ran-binding protein 2, Ran binding domain repeats 2 Back     alignment and domain information
>gnl|CDD|241332 cd13178, RanBD4_RanBP2_mammal-like, Ran-binding protein 2, Ran binding domain repeats 2 and 4 Back     alignment and domain information
>gnl|CDD|241328 cd13174, RanBD4_RanBP2_insect-like, Ran-binding protein 2, Ran binding domain repeat 4 Back     alignment and domain information
>gnl|CDD|227499 COG5171, YRB1, Ran GTPase-activating protein (Ran-binding protein) [Intracellular trafficking and secretion] Back     alignment and domain information
>gnl|CDD|227499 COG5171, YRB1, Ran GTPase-activating protein (Ran-binding protein) [Intracellular trafficking and secretion] Back     alignment and domain information
>gnl|CDD|241329 cd13175, RanBD5_RanBP2_insect-like, Ran-binding protein 2, Ran binding domain repeat 5 Back     alignment and domain information
>gnl|CDD|241335 cd13181, RanBD_NUP2, Nucleoporin 2 Ran-binding domain Back     alignment and domain information
>gnl|CDD|241329 cd13175, RanBD5_RanBP2_insect-like, Ran-binding protein 2, Ran binding domain repeat 5 Back     alignment and domain information
>gnl|CDD|241335 cd13181, RanBD_NUP2, Nucleoporin 2 Ran-binding domain Back     alignment and domain information
>gnl|CDD|241324 cd13170, RanBD_NUP50, Nucleoporin 50 Ran-binding domain Back     alignment and domain information
>gnl|CDD|241324 cd13170, RanBD_NUP50, Nucleoporin 50 Ran-binding domain Back     alignment and domain information
>gnl|CDD|241323 cd13169, RanBD_NUP50_plant, Ran-binding protein 2, repeat 1 Back     alignment and domain information
>gnl|CDD|241323 cd13169, RanBD_NUP50_plant, Ran-binding protein 2, repeat 1 Back     alignment and domain information
>gnl|CDD|218439 pfam05109, Herpes_BLLF1, Herpes virus major outer envelope glycoprotein (BLLF1) Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 388
smart00160130 RanBD Ran-binding domain. Domain of apporximately 100.0
cd00835122 RanBD Ran-binding domain. Ran-binding domain; This 100.0
PF00638122 Ran_BP1: RanBP1 domain; InterPro: IPR000156 Ran is 100.0
COG5171211 YRB1 Ran GTPase-activating protein (Ran-binding pr 100.0
cd00835122 RanBD Ran-binding domain. Ran-binding domain; This 99.96
smart00160130 RanBD Ran-binding domain. Domain of apporximately 99.96
PF00638122 Ran_BP1: RanBP1 domain; InterPro: IPR000156 Ran is 99.95
COG5171211 YRB1 Ran GTPase-activating protein (Ran-binding pr 99.94
KOG0864|consensus215 99.91
KOG2724|consensus487 99.75
KOG0864|consensus215 99.67
KOG0866|consensus327 99.35
KOG2724|consensus487 99.08
cd00837104 EVH1 EVH1 (Enabled, Vasp-Homology) or WASP Homolog 99.04
cd00837104 EVH1 EVH1 (Enabled, Vasp-Homology) or WASP Homolog 98.79
KOG0866|consensus327 98.46
PF00568111 WH1: WH1 domain; InterPro: IPR000697 The EVH1 (WH1 98.2
cd01207111 Ena-Vasp Enabled-VASP-type homology (EVH1) domain. 98.06
cd01206111 Homer Homer type EVH1 domain. Homer type EVH1 doma 97.84
PF00568111 WH1: WH1 domain; InterPro: IPR000697 The EVH1 (WH1 97.77
cd01207111 Ena-Vasp Enabled-VASP-type homology (EVH1) domain. 97.7
cd01206111 Homer Homer type EVH1 domain. Homer type EVH1 doma 97.19
smart00461106 WH1 WASP homology region 1. Region of the Wiskott- 96.55
smart00461106 WH1 WASP homology region 1. Region of the Wiskott- 96.32
PF08553 794 VID27: VID27 cytoplasmic protein; InterPro: IPR013 93.09
KOG4590|consensus 409 81.55
>smart00160 RanBD Ran-binding domain Back     alignment and domain information 
Probab=100.00  E-value=5.4e-38  Score=274.39  Aligned_cols=123  Identities=54%  Similarity=0.979  Sum_probs=117.5

Q ss_pred             ceeccCCCCccccccCccccEEEEEEeeeEEeecc--cccceeeeEEEEEEEeCCC-CcEEEEEEeCCeeeeEeccccCc
Q psy15646        164 FKPIIPLPDEVPVTTGEENETVLFEQRAKLYRFVD--KEWKERGVGQLKLLKNKDT-GKVRLLMRRDIVHKICANHFLHQ  240 (388)
Q Consensus       164 f~Piv~LP~~vev~TGEEdEe~lF~~RaKLyrf~~--k~WKERGvG~LKIlk~k~t-gk~RLLMRrdqv~KV~lN~~I~~  240 (388)
                      |+||++||+ |||+||||||++||+.|||||+|++  ++|+|||+|+||||+++++ +++|||||+|+++||||||+|++
T Consensus         1 ~~~~~~l~~-ve~~tgEE~E~~lf~~r~KL~~~~~~~~~WkerG~G~lki~~~~~~~~~~RivmR~~~~~kv~lN~~i~~   79 (130)
T smart00160        1 FKPVVPLPD-VEVKTGEEDEEVIFSARAKLYRFANDKKEWKERGVGDLKILKSKDNGGKVRIVMRRDGVLKVCANHPIFK   79 (130)
T ss_pred             CCCcccCcc-ccccCCCcCeEEEEEEEeEEEEEcCCCCCCeeccEEEEEEEEcCCCCCeEEEEEEECCCceEEeccEecC
Confidence            789999996 9999999999999999999999985  7999999999999999999 89999999999999999999999


Q ss_pred             CceEeecCCCCcEEEEEeecCCccccccceeeeecCChhhHHhhccc
Q psy15646        241 DMELKPMPNTKQAYIWFAQDYADEVVSDEQLCAKFKLPEDAERFRSV  287 (388)
Q Consensus       241 ~M~~~~~~~s~ks~~w~a~D~aDee~k~et~~IRFKt~e~A~eFksV  287 (388)
                      +|+++++.++.++|+|.+.|++|++.++++|+|||+++++|++|..+
T Consensus        80 ~~~~~~~~~~~~~~~~~~~d~~d~~~~~~~~~irfk~~e~a~~f~~~  126 (130)
T smart00160       80 SMTLKPLAGSNRALKWTPEDFADDIPKLVLYAVRFKTKEEADSFKNI  126 (130)
T ss_pred             CcEEeecCCCcceEEEeeeecCCCCCceEEEEEEeCCHHHHHHHHHH
Confidence            99999988888999999999999999999999999999999999753

Domain of apporximately 150 residues that stabilises the GTP-bound form of Ran (the Ras-like nuclear small GTPase).
>cd00835 RanBD Ran-binding domain Back     alignment and domain information
>PF00638 Ran_BP1: RanBP1 domain; InterPro: IPR000156 Ran is an evolutionary conserved member of the Ras superfamily that regulates all receptor-mediated transport between the nucleus and the cytoplasm Back     alignment and domain information
>COG5171 YRB1 Ran GTPase-activating protein (Ran-binding protein) [Intracellular trafficking and secretion] Back     alignment and domain information
>cd00835 RanBD Ran-binding domain Back     alignment and domain information
>smart00160 RanBD Ran-binding domain Back     alignment and domain information
>PF00638 Ran_BP1: RanBP1 domain; InterPro: IPR000156 Ran is an evolutionary conserved member of the Ras superfamily that regulates all receptor-mediated transport between the nucleus and the cytoplasm Back     alignment and domain information
>COG5171 YRB1 Ran GTPase-activating protein (Ran-binding protein) [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG0864|consensus Back     alignment and domain information
>KOG2724|consensus Back     alignment and domain information
>KOG0864|consensus Back     alignment and domain information
>KOG0866|consensus Back     alignment and domain information
>KOG2724|consensus Back     alignment and domain information
>cd00837 EVH1 EVH1 (Enabled, Vasp-Homology) or WASP Homology (WH1) domain Back     alignment and domain information
>cd00837 EVH1 EVH1 (Enabled, Vasp-Homology) or WASP Homology (WH1) domain Back     alignment and domain information
>KOG0866|consensus Back     alignment and domain information
>PF00568 WH1: WH1 domain; InterPro: IPR000697 The EVH1 (WH1, RanBP1-WASP) domain is found in multi-domain proteins implicated in a diverse range of signalling, nuclear transport and cytoskeletal events Back     alignment and domain information
>cd01207 Ena-Vasp Enabled-VASP-type homology (EVH1) domain Back     alignment and domain information
>cd01206 Homer Homer type EVH1 domain Back     alignment and domain information
>PF00568 WH1: WH1 domain; InterPro: IPR000697 The EVH1 (WH1, RanBP1-WASP) domain is found in multi-domain proteins implicated in a diverse range of signalling, nuclear transport and cytoskeletal events Back     alignment and domain information
>cd01207 Ena-Vasp Enabled-VASP-type homology (EVH1) domain Back     alignment and domain information
>cd01206 Homer Homer type EVH1 domain Back     alignment and domain information
>smart00461 WH1 WASP homology region 1 Back     alignment and domain information
>smart00461 WH1 WASP homology region 1 Back     alignment and domain information
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins Back     alignment and domain information
>KOG4590|consensus Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query388
1rrp_B134 Structure Of The Ran-Gppnhp-Ranbd1 Complex Length = 4e-34
1rrp_B134 Structure Of The Ran-Gppnhp-Ranbd1 Complex Length = 2e-24
1k5d_B201 Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Compl 6e-28
1k5d_B201 Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Compl 8e-22
1xke_A130 Solution Structure Of The Second Ran-Binding Domain 6e-28
1xke_A130 Solution Structure Of The Second Ran-Binding Domain 5e-23
4gpt_B140 Crystal Structure Of Kpt251 In Complex With Crm1-ra 1e-20
4gpt_B140 Crystal Structure Of Kpt251 In Complex With Crm1-ra 3e-18
3m1i_B191 Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex 1e-20
3m1i_B191 Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex 2e-18
4gmx_B141 Crystal Structure Of Kpt185 In Complex With Crm1-Ra 3e-20
4gmx_B141 Crystal Structure Of Kpt185 In Complex With Crm1-Ra 7e-18
4hat_B140 Crystal Structure Of Crm1 Inhibitor Leptomycin B In 3e-20
4hat_B140 Crystal Structure Of Crm1 Inhibitor Leptomycin B In 8e-18
3n7c_A130 Crystal Structure Of The Ran Binding Domain From Th 2e-07
3oan_A130 Crystal Structure Of The Ran Binding Domain From Th 2e-07
>pdb|1RRP|B Chain B, Structure Of The Ran-Gppnhp-Ranbd1 Complex Length = 134 Back     alignment and structure 
Iteration: 1

 Score =  142 bits (357), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 65/125 (52%), Positives = 92/125 (73%), Gaps = 2/125 (1%)
Query: 164 FKPIIPLPDEVPVTTGEENETVLFEQRAKLYRF--VDKEWKERGVGQLKLLKNKDTGKVR 221
           F+P++PLPD++ V TGEE+E   F  RAKL+RF    KEWKERG+G +K+L++K +GK+R
Sbjct: 2   FEPVVPLPDKIEVKTGEEDEEEFFCNRAKLFRFDVESKEWKERGIGNVKILRHKTSGKIR 61
Query: 222 LLMRRDIVHKICANHFLHQDMELKPMPNTKQAYIWFAQDYADEVVSDEQLCAKFKLPEDA 281
           LLMRR+ V KICANH++  DM+L P   + ++++W A DYADE+   EQL  +FK PE+A
Sbjct: 62  LLMRREQVLKICANHYISPDMKLTPNAGSDRSFVWHALDYADELPKPEQLAIRFKTPEEA 121
Query: 282 ERFRS 286
             F+ 
Sbjct: 122 ALFKC 126
>pdb|1RRP|B Chain B, Structure Of The Ran-Gppnhp-Ranbd1 Complex Length = 134 Back     alignment and structure
>pdb|1K5D|B Chain B, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex Length = 201 Back     alignment and structure
>pdb|1K5D|B Chain B, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex Length = 201 Back     alignment and structure
>pdb|1XKE|A Chain A, Solution Structure Of The Second Ran-Binding Domain From Human Ranbp2 Length = 130 Back     alignment and structure
>pdb|1XKE|A Chain A, Solution Structure Of The Second Ran-Binding Domain From Human Ranbp2 Length = 130 Back     alignment and structure
>pdb|4GPT|B Chain B, Crystal Structure Of Kpt251 In Complex With Crm1-ran-ranbp1 Length = 140 Back     alignment and structure
>pdb|4GPT|B Chain B, Crystal Structure Of Kpt251 In Complex With Crm1-ran-ranbp1 Length = 140 Back     alignment and structure
>pdb|3M1I|B Chain B, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp) Length = 191 Back     alignment and structure
>pdb|3M1I|B Chain B, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp) Length = 191 Back     alignment and structure
>pdb|4GMX|B Chain B, Crystal Structure Of Kpt185 In Complex With Crm1-Ran-Ranbp1 Length = 141 Back     alignment and structure
>pdb|4GMX|B Chain B, Crystal Structure Of Kpt185 In Complex With Crm1-Ran-Ranbp1 Length = 141 Back     alignment and structure
>pdb|4HAT|B Chain B, Crystal Structure Of Crm1 Inhibitor Leptomycin B In Complex With Crm1- Ran-ranbp1 Length = 140 Back     alignment and structure
>pdb|4HAT|B Chain B, Crystal Structure Of Crm1 Inhibitor Leptomycin B In Complex With Crm1- Ran-ranbp1 Length = 140 Back     alignment and structure
>pdb|3N7C|A Chain A, Crystal Structure Of The Ran Binding Domain From The Nuclear Complex Component Nup2 From Ashbya Gossypii Length = 130 Back     alignment and structure
>pdb|3OAN|A Chain A, Crystal Structure Of The Ran Binding Domain From The Nuclear Complex Component Nup2 From Ashbya Gossypii Length = 130 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query388
1rrp_B134 Nuclear pore complex protein NUP358; complex (smal 7e-43
1rrp_B134 Nuclear pore complex protein NUP358; complex (smal 1e-28
1k5d_B201 RAN-specific GTPase-activating protein; ranbp1, ra 2e-38
1k5d_B201 RAN-specific GTPase-activating protein; ranbp1, ra 3e-26
2ec1_A125 Nucleoporin 50 kDa; ranbp domain, nuclear pore-ass 8e-38
2ec1_A125 Nucleoporin 50 kDa; ranbp domain, nuclear pore-ass 5e-32
1xke_A130 RAN-binding protein 2; beta barrel, pleckstrin-hom 1e-35
1xke_A130 RAN-binding protein 2; beta barrel, pleckstrin-hom 6e-29
3m1i_B191 RAN-specific GTPase-activating protein 1; heat rep 4e-35
3m1i_B191 RAN-specific GTPase-activating protein 1; heat rep 3e-23
3n7c_A130 ABR034WP; nuclear pore complex, NUP2, RAN-binding 3e-33
3n7c_A130 ABR034WP; nuclear pore complex, NUP2, RAN-binding 1e-27
2y8g_A138 Ranbp3-B, RAN-binding protein 3; protein transport 9e-30
2y8g_A138 Ranbp3-B, RAN-binding protein 3; protein transport 1e-26
2crf_A150 RAN binding protein 3; RAN_BP1 domain, ranbp3, str 2e-29
2crf_A150 RAN binding protein 3; RAN_BP1 domain, ranbp3, str 1e-24
1evh_A112 WH1 domain, protein (MENA EVH1 domain); molecular 9e-14
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-04
>1rrp_B Nuclear pore complex protein NUP358; complex (small GTPase/nuclear protein), small GTPase, nuclear transport; HET: GNP; 2.96A {Homo sapiens} SCOP: b.55.1.3 Length = 134 Back     alignment and structure
 Score =  145 bits (367), Expect = 7e-43
 Identities = 65/126 (51%), Positives = 92/126 (73%), Gaps = 2/126 (1%)

Query: 164 FKPIIPLPDEVPVTTGEENETVLFEQRAKLYRFV--DKEWKERGVGQLKLLKNKDTGKVR 221
           F+P++PLPD++ V TGEE+E   F  RAKL+RF    KEWKERG+G +K+L++K +GK+R
Sbjct: 2   FEPVVPLPDKIEVKTGEEDEEEFFCNRAKLFRFDVESKEWKERGIGNVKILRHKTSGKIR 61

Query: 222 LLMRRDIVHKICANHFLHQDMELKPMPNTKQAYIWFAQDYADEVVSDEQLCAKFKLPEDA 281
           LLMRR+ V KICANH++  DM+L P   + ++++W A DYADE+   EQL  +FK PE+A
Sbjct: 62  LLMRREQVLKICANHYISPDMKLTPNAGSDRSFVWHALDYADELPKPEQLAIRFKTPEEA 121

Query: 282 ERFRSV 287
             F+  
Sbjct: 122 ALFKCK 127
>1rrp_B Nuclear pore complex protein NUP358; complex (small GTPase/nuclear protein), small GTPase, nuclear transport; HET: GNP; 2.96A {Homo sapiens} SCOP: b.55.1.3 Length = 134 Back     alignment and structure
>1k5d_B RAN-specific GTPase-activating protein; ranbp1, rangap, GAP, signal transduction, nuclear transport, GTP hydrolysis, ground state; HET: GNP; 2.70A {Homo sapiens} SCOP: b.55.1.3 PDB: 1k5g_B* Length = 201 Back     alignment and structure
>1k5d_B RAN-specific GTPase-activating protein; ranbp1, rangap, GAP, signal transduction, nuclear transport, GTP hydrolysis, ground state; HET: GNP; 2.70A {Homo sapiens} SCOP: b.55.1.3 PDB: 1k5g_B* Length = 201 Back     alignment and structure
>2ec1_A Nucleoporin 50 kDa; ranbp domain, nuclear pore-associated protein 60 kDa-like, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 125 Back     alignment and structure
>2ec1_A Nucleoporin 50 kDa; ranbp domain, nuclear pore-associated protein 60 kDa-like, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 125 Back     alignment and structure
>1xke_A RAN-binding protein 2; beta barrel, pleckstrin-homology (PH) domain, phosphotyrosine-binding (PTB) domain, protein transport; NMR {Homo sapiens} SCOP: b.55.1.3 Length = 130 Back     alignment and structure
>1xke_A RAN-binding protein 2; beta barrel, pleckstrin-homology (PH) domain, phosphotyrosine-binding (PTB) domain, protein transport; NMR {Homo sapiens} SCOP: b.55.1.3 Length = 130 Back     alignment and structure
>3m1i_B RAN-specific GTPase-activating protein 1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} Length = 191 Back     alignment and structure
>3m1i_B RAN-specific GTPase-activating protein 1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} Length = 191 Back     alignment and structure
>3n7c_A ABR034WP; nuclear pore complex, NUP2, RAN-binding domain, nucleoporin, structural genomics, PSI-2, protein structure initiative; 2.26A {Ashbya gossypii} PDB: 3oan_A Length = 130 Back     alignment and structure
>3n7c_A ABR034WP; nuclear pore complex, NUP2, RAN-binding domain, nucleoporin, structural genomics, PSI-2, protein structure initiative; 2.26A {Ashbya gossypii} PDB: 3oan_A Length = 130 Back     alignment and structure
>2y8g_A Ranbp3-B, RAN-binding protein 3; protein transport, CRM1-mediated nuclear export; 1.61A {Homo sapiens} PDB: 2y8f_A Length = 138 Back     alignment and structure
>2y8g_A Ranbp3-B, RAN-binding protein 3; protein transport, CRM1-mediated nuclear export; 1.61A {Homo sapiens} PDB: 2y8f_A Length = 138 Back     alignment and structure
>2crf_A RAN binding protein 3; RAN_BP1 domain, ranbp3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.55.1.3 Length = 150 Back     alignment and structure
>2crf_A RAN binding protein 3; RAN_BP1 domain, ranbp3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.55.1.3 Length = 150 Back     alignment and structure
>1evh_A WH1 domain, protein (MENA EVH1 domain); molecular recognition, actin dynamics, contractIle protein; 1.80A {Mus musculus} SCOP: b.55.1.4 PDB: 2xqn_M 2iyb_A Length = 112 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query388
1rrp_B134 Nuclear pore complex protein NUP358; complex (smal 100.0
3m1i_B191 RAN-specific GTPase-activating protein 1; heat rep 100.0
4hat_B140 RAN-specific GTPase-activating protein 1; heat rep 100.0
1k5d_B201 RAN-specific GTPase-activating protein; ranbp1, ra 100.0
1xke_A130 RAN-binding protein 2; beta barrel, pleckstrin-hom 100.0
2crf_A150 RAN binding protein 3; RAN_BP1 domain, ranbp3, str 100.0
3n7c_A130 ABR034WP; nuclear pore complex, NUP2, RAN-binding 100.0
2y8g_A138 Ranbp3-B, RAN-binding protein 3; protein transport 100.0
2ec1_A125 Nucleoporin 50 kDa; ranbp domain, nuclear pore-ass 100.0
1xke_A130 RAN-binding protein 2; beta barrel, pleckstrin-hom 99.97
4hat_B140 RAN-specific GTPase-activating protein 1; heat rep 99.97
1rrp_B134 Nuclear pore complex protein NUP358; complex (smal 99.97
3m1i_B191 RAN-specific GTPase-activating protein 1; heat rep 99.97
1k5d_B201 RAN-specific GTPase-activating protein; ranbp1, ra 99.96
3n7c_A130 ABR034WP; nuclear pore complex, NUP2, RAN-binding 99.96
2y8g_A138 Ranbp3-B, RAN-binding protein 3; protein transport 99.96
2crf_A150 RAN binding protein 3; RAN_BP1 domain, ranbp3, str 99.96
2ec1_A125 Nucleoporin 50 kDa; ranbp domain, nuclear pore-ass 99.95
1qc6_A130 EVH1 domain from ENA/VAsp-like protein; AN incompl 99.42
1qc6_A130 EVH1 domain from ENA/VAsp-like protein; AN incompl 99.16
1ddw_A120 GLGF-domain protein homer; pleckstrin homology dom 99.0
1i2h_A168 PSD-ZIP45(homer-1C/VESL-1L); enabled VAsp homology 98.85
1egx_A115 VAsp, vasodilator-stimulated phosphoprotein; EVH1, 98.44
1evh_A112 WH1 domain, protein (MENA EVH1 domain); molecular 98.44
1ddw_A120 GLGF-domain protein homer; pleckstrin homology dom 98.44
1i2h_A168 PSD-ZIP45(homer-1C/VESL-1L); enabled VAsp homology 98.39
2jp2_A126 Spred-2, sprouty-related, EVH1 domain-containing p 98.06
1xod_A118 Spred1; sprouty, EVH1, peptide-binding, signaling 98.06
1evh_A112 WH1 domain, protein (MENA EVH1 domain); molecular 98.05
1egx_A115 VAsp, vasodilator-stimulated phosphoprotein; EVH1, 98.03
2jp2_A126 Spred-2, sprouty-related, EVH1 domain-containing p 97.61
1xod_A118 Spred1; sprouty, EVH1, peptide-binding, signaling 97.61
3syx_A130 Sprouty-related, EVH1 domain-containing protein 1; 97.11
3syx_A130 Sprouty-related, EVH1 domain-containing protein 1; 94.59
1mke_A152 WIP - N-WAsp, fusion protein consisting of wiskott 94.13
2ifs_A169 N-WAsp, wiskott-aldrich syndrome protien ineractin 93.36
1mke_A152 WIP - N-WAsp, fusion protein consisting of wiskott 89.61
2ifs_A169 N-WAsp, wiskott-aldrich syndrome protien ineractin 88.87
>1rrp_B Nuclear pore complex protein NUP358; complex (small GTPase/nuclear protein), small GTPase, nuclear transport; HET: GNP; 2.96A {Homo sapiens} SCOP: b.55.1.3 Back     alignment and structure
Probab=100.00  E-value=2e-43  Score=308.67  Aligned_cols=124  Identities=52%  Similarity=0.999  Sum_probs=120.4

Q ss_pred             CceeccCCCCccccccCccccEEEEEEeeeEEeecc--cccceeeeEEEEEEEeCCCCcEEEEEEeCCeeeeEeccccCc
Q psy15646        163 DFKPIIPLPDEVPVTTGEENETVLFEQRAKLYRFVD--KEWKERGVGQLKLLKNKDTGKVRLLMRRDIVHKICANHFLHQ  240 (388)
Q Consensus       163 ~f~Piv~LP~~vev~TGEEdEe~lF~~RaKLyrf~~--k~WKERGvG~LKIlk~k~tgk~RLLMRrdqv~KV~lN~~I~~  240 (388)
                      ||+|||+||++|+|+||||||++||+.|||||+|++  ++|+|||+|.||||+|++++++|||||+|+++||||||+|++
T Consensus         1 ~~~pi~~l~~~vev~tGEE~E~~lf~~raKL~~~~~~~~~WkerG~G~lkil~~k~~~k~RlvmR~d~~~kv~lN~~i~~   80 (134)
T 1rrp_B            1 HFEPVVPLPDKIEVKTGEEDEEEFFCNRAKLFRFDVESKEWKERGIGNVKILRHKTSGKIRLLMRREQVLKICANHYISP   80 (134)
T ss_dssp             CCCCSSCCCCCCCCCCSCCSEEEEEEEEEEEEEECSSSSCEEEEEEEEEEEEEESSSCCCEEEEECTTTCCEEECCBCCS
T ss_pred             CcccceECCceEeecCCCcCeEEEEEEEEEEEEEcccCCCcccCcEEEEEEEEECCCCeEEEEEEEcCCCcEEEEeEecC
Confidence            799999999999999999999999999999999974  899999999999999999999999999999999999999999


Q ss_pred             CceEeecCCCCcEEEEEeecCCccccccceeeeecCChhhHHhhcc
Q psy15646        241 DMELKPMPNTKQAYIWFAQDYADEVVSDEQLCAKFKLPEDAERFRS  286 (388)
Q Consensus       241 ~M~~~~~~~s~ks~~w~a~D~aDee~k~et~~IRFKt~e~A~eFks  286 (388)
                      +|+++++.+++++|+|++.|++|+++++++|+|||+++|.|++|+.
T Consensus        81 ~m~~~~~~~s~~~~~~~~~d~~d~~~k~~~~~irfk~~e~A~~f~~  126 (134)
T 1rrp_B           81 DMKLTPNAGSDRSFVWHALDYADELPKPEQLAIRFKTPEEAALFKC  126 (134)
T ss_dssp             SCCCBCSTTCTTEEEEEEEECTTSSCEEEEEEEECSSHHHHHHHHH
T ss_pred             CceEeecCCCCeEEEEEcccccCCCCceEEEEEEECCHHHHHHHHH
Confidence            9999999889999999999999999999999999999999999975
>3m1i_B RAN-specific GTPase-activating protein 1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} Back     alignment and structure
>4hat_B RAN-specific GTPase-activating protein 1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_B* 4hav_B* 4haw_B* 4hax_B* 4hay_B* 4haz_B* 4hb0_B* 4hb2_B* 4hb3_B* 4hb4_B* 4gmx_B* 4gpt_B* Back     alignment and structure
>1k5d_B RAN-specific GTPase-activating protein; ranbp1, rangap, GAP, signal transduction, nuclear transport, GTP hydrolysis, ground state; HET: GNP; 2.70A {Homo sapiens} SCOP: b.55.1.3 PDB: 1k5g_B* Back     alignment and structure
>1xke_A RAN-binding protein 2; beta barrel, pleckstrin-homology (PH) domain, phosphotyrosine-binding (PTB) domain, protein transport; NMR {Homo sapiens} SCOP: b.55.1.3 Back     alignment and structure
>2crf_A RAN binding protein 3; RAN_BP1 domain, ranbp3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.55.1.3 Back     alignment and structure
>3n7c_A ABR034WP; nuclear pore complex, NUP2, RAN-binding domain, nucleoporin, structural genomics, PSI-2, protein structure initiative; 2.26A {Ashbya gossypii} PDB: 3oan_A Back     alignment and structure
>2y8g_A Ranbp3-B, RAN-binding protein 3; protein transport, CRM1-mediated nuclear export; 1.61A {Homo sapiens} PDB: 2y8f_A Back     alignment and structure
>2ec1_A Nucleoporin 50 kDa; ranbp domain, nuclear pore-associated protein 60 kDa-like, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1xke_A RAN-binding protein 2; beta barrel, pleckstrin-homology (PH) domain, phosphotyrosine-binding (PTB) domain, protein transport; NMR {Homo sapiens} SCOP: b.55.1.3 Back     alignment and structure
>4hat_B RAN-specific GTPase-activating protein 1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_B* 4hav_B* 4haw_B* 4hax_B* 4hay_B* 4haz_B* 4hb0_B* 4hb2_B* 4hb3_B* 4hb4_B* 4gmx_B* 4gpt_B* Back     alignment and structure
>1rrp_B Nuclear pore complex protein NUP358; complex (small GTPase/nuclear protein), small GTPase, nuclear transport; HET: GNP; 2.96A {Homo sapiens} SCOP: b.55.1.3 Back     alignment and structure
>3m1i_B RAN-specific GTPase-activating protein 1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} Back     alignment and structure
>1k5d_B RAN-specific GTPase-activating protein; ranbp1, rangap, GAP, signal transduction, nuclear transport, GTP hydrolysis, ground state; HET: GNP; 2.70A {Homo sapiens} SCOP: b.55.1.3 PDB: 1k5g_B* Back     alignment and structure
>3n7c_A ABR034WP; nuclear pore complex, NUP2, RAN-binding domain, nucleoporin, structural genomics, PSI-2, protein structure initiative; 2.26A {Ashbya gossypii} PDB: 3oan_A Back     alignment and structure
>2y8g_A Ranbp3-B, RAN-binding protein 3; protein transport, CRM1-mediated nuclear export; 1.61A {Homo sapiens} PDB: 2y8f_A Back     alignment and structure
>2crf_A RAN binding protein 3; RAN_BP1 domain, ranbp3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.55.1.3 Back     alignment and structure
>2ec1_A Nucleoporin 50 kDa; ranbp domain, nuclear pore-associated protein 60 kDa-like, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1qc6_A EVH1 domain from ENA/VAsp-like protein; AN incomplete seven stranded anti-parallel beta barrel closed by AN alpha helix, EVH1 domain; 2.60A {Mus musculus} SCOP: b.55.1.4 Back     alignment and structure
>1qc6_A EVH1 domain from ENA/VAsp-like protein; AN incomplete seven stranded anti-parallel beta barrel closed by AN alpha helix, EVH1 domain; 2.60A {Mus musculus} SCOP: b.55.1.4 Back     alignment and structure
>1ddw_A GLGF-domain protein homer; pleckstrin homology domain fold, signaling protein; 1.70A {Rattus norvegicus} SCOP: b.55.1.4 PDB: 1ddv_A 2p8v_A 1i7a_A* Back     alignment and structure
>1i2h_A PSD-ZIP45(homer-1C/VESL-1L); enabled VAsp homology 1 domain, signaling protein; 1.80A {Rattus norvegicus} SCOP: b.55.1.4 Back     alignment and structure
>1egx_A VAsp, vasodilator-stimulated phosphoprotein; EVH1, VAsp-ENA, poly-proline-binding domain, signaling protein; NMR {Homo sapiens} SCOP: b.55.1.4 Back     alignment and structure
>1evh_A WH1 domain, protein (MENA EVH1 domain); molecular recognition, actin dynamics, contractIle protein; 1.80A {Mus musculus} SCOP: b.55.1.4 PDB: 2xqn_M 2iyb_A Back     alignment and structure
>1ddw_A GLGF-domain protein homer; pleckstrin homology domain fold, signaling protein; 1.70A {Rattus norvegicus} SCOP: b.55.1.4 PDB: 1ddv_A 2p8v_A 1i7a_A* Back     alignment and structure
>1i2h_A PSD-ZIP45(homer-1C/VESL-1L); enabled VAsp homology 1 domain, signaling protein; 1.80A {Rattus norvegicus} SCOP: b.55.1.4 Back     alignment and structure
>2jp2_A Spred-2, sprouty-related, EVH1 domain-containing protein 2; solution structure, structural genomics, structural genomics consortium, SGC; NMR {Homo sapiens} Back     alignment and structure
>1xod_A Spred1; sprouty, EVH1, peptide-binding, signaling protein; 1.15A {Xenopus tropicalis} SCOP: b.55.1.4 PDB: 1tj6_A Back     alignment and structure
>1evh_A WH1 domain, protein (MENA EVH1 domain); molecular recognition, actin dynamics, contractIle protein; 1.80A {Mus musculus} SCOP: b.55.1.4 PDB: 2xqn_M 2iyb_A Back     alignment and structure
>1egx_A VAsp, vasodilator-stimulated phosphoprotein; EVH1, VAsp-ENA, poly-proline-binding domain, signaling protein; NMR {Homo sapiens} SCOP: b.55.1.4 Back     alignment and structure
>2jp2_A Spred-2, sprouty-related, EVH1 domain-containing protein 2; solution structure, structural genomics, structural genomics consortium, SGC; NMR {Homo sapiens} Back     alignment and structure
>1xod_A Spred1; sprouty, EVH1, peptide-binding, signaling protein; 1.15A {Xenopus tropicalis} SCOP: b.55.1.4 PDB: 1tj6_A Back     alignment and structure
>3syx_A Sprouty-related, EVH1 domain-containing protein 1; WH1 domain, human sprouty-related, EVH1 domain-containing PR Q7Z699; 2.45A {Homo sapiens} Back     alignment and structure
>3syx_A Sprouty-related, EVH1 domain-containing protein 1; WH1 domain, human sprouty-related, EVH1 domain-containing PR Q7Z699; 2.45A {Homo sapiens} Back     alignment and structure
>1mke_A WIP - N-WAsp, fusion protein consisting of wiskott-aldrich syndrome protein interacting protein...; polyproline, protein-protein complex; NMR {Rattus norvegicus} SCOP: b.55.1.4 Back     alignment and structure
>2ifs_A N-WAsp, wiskott-aldrich syndrome protien ineracting protein and neural wiskott-aldrich syndrome...; verprolin, polyproline, protein- protein complex; NMR {Homo sapiens} Back     alignment and structure
>1mke_A WIP - N-WAsp, fusion protein consisting of wiskott-aldrich syndrome protein interacting protein...; polyproline, protein-protein complex; NMR {Rattus norvegicus} SCOP: b.55.1.4 Back     alignment and structure
>2ifs_A N-WAsp, wiskott-aldrich syndrome protien ineracting protein and neural wiskott-aldrich syndrome...; verprolin, polyproline, protein- protein complex; NMR {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 388
d1rrpb_134 b.55.1.3 (B:) Nuclear pore complex protein Nup358 1e-51
d1rrpb_134 b.55.1.3 (B:) Nuclear pore complex protein Nup358 6e-36
d1k5db_146 b.55.1.3 (B:) Ran-binding protein 1, Ranbp1 {Human 2e-46
d1k5db_146 b.55.1.3 (B:) Ran-binding protein 1, Ranbp1 {Human 7e-32
d2crfa1137 b.55.1.3 (A:8-144) Ran binding protein 3 {Human (H 4e-39
d2crfa1137 b.55.1.3 (A:8-144) Ran binding protein 3 {Human (H 5e-31
d1xkea1118 b.55.1.3 (A:7-124) Ran-binding protein 2 {Human (H 7e-38
d1xkea1118 b.55.1.3 (A:7-124) Ran-binding protein 2 {Human (H 2e-30
d1egxa_115 b.55.1.4 (A:) Vasodilator-stimulated phosphoprotei 1e-24
d1egxa_115 b.55.1.4 (A:) Vasodilator-stimulated phosphoprotei 1e-18
d1evha_111 b.55.1.4 (A:) Enabled {Mouse (Mus musculus) [TaxId 6e-22
d1evha_111 b.55.1.4 (A:) Enabled {Mouse (Mus musculus) [TaxId 1e-17
>d1rrpb_ b.55.1.3 (B:) Nuclear pore complex protein Nup358 {Human (Homo sapiens) [TaxId: 9606]} Length = 134 Back     information, alignment and structure

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Ran-binding domain
domain: Nuclear pore complex protein Nup358
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  166 bits (423), Expect = 1e-51
 Identities = 65/126 (51%), Positives = 92/126 (73%), Gaps = 2/126 (1%)

Query: 164 FKPIIPLPDEVPVTTGEENETVLFEQRAKLYRFV--DKEWKERGVGQLKLLKNKDTGKVR 221
           F+P++PLPD++ V TGEE+E   F  RAKL+RF    KEWKERG+G +K+L++K +GK+R
Sbjct: 2   FEPVVPLPDKIEVKTGEEDEEEFFCNRAKLFRFDVESKEWKERGIGNVKILRHKTSGKIR 61

Query: 222 LLMRRDIVHKICANHFLHQDMELKPMPNTKQAYIWFAQDYADEVVSDEQLCAKFKLPEDA 281
           LLMRR+ V KICANH++  DM+L P   + ++++W A DYADE+   EQL  +FK PE+A
Sbjct: 62  LLMRREQVLKICANHYISPDMKLTPNAGSDRSFVWHALDYADELPKPEQLAIRFKTPEEA 121

Query: 282 ERFRSV 287
             F+  
Sbjct: 122 ALFKCK 127
>d1rrpb_ b.55.1.3 (B:) Nuclear pore complex protein Nup358 {Human (Homo sapiens) [TaxId: 9606]} Length = 134 Back     information, alignment and structure
>d1k5db_ b.55.1.3 (B:) Ran-binding protein 1, Ranbp1 {Human (Homo sapiens) [TaxId: 9606]} Length = 146 Back     information, alignment and structure
>d1k5db_ b.55.1.3 (B:) Ran-binding protein 1, Ranbp1 {Human (Homo sapiens) [TaxId: 9606]} Length = 146 Back     information, alignment and structure
>d2crfa1 b.55.1.3 (A:8-144) Ran binding protein 3 {Human (Homo sapiens) [TaxId: 9606]} Length = 137 Back     information, alignment and structure
>d2crfa1 b.55.1.3 (A:8-144) Ran binding protein 3 {Human (Homo sapiens) [TaxId: 9606]} Length = 137 Back     information, alignment and structure
>d1xkea1 b.55.1.3 (A:7-124) Ran-binding protein 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 118 Back     information, alignment and structure
>d1xkea1 b.55.1.3 (A:7-124) Ran-binding protein 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 118 Back     information, alignment and structure
>d1egxa_ b.55.1.4 (A:) Vasodilator-stimulated phosphoprotein (VASP) {Human (Homo sapiens) [TaxId: 9606]} Length = 115 Back     information, alignment and structure
>d1egxa_ b.55.1.4 (A:) Vasodilator-stimulated phosphoprotein (VASP) {Human (Homo sapiens) [TaxId: 9606]} Length = 115 Back     information, alignment and structure
>d1evha_ b.55.1.4 (A:) Enabled {Mouse (Mus musculus) [TaxId: 10090]} Length = 111 Back     information, alignment and structure
>d1evha_ b.55.1.4 (A:) Enabled {Mouse (Mus musculus) [TaxId: 10090]} Length = 111 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query388
d1rrpb_134 Nuclear pore complex protein Nup358 {Human (Homo s 100.0
d1k5db_146 Ran-binding protein 1, Ranbp1 {Human (Homo sapiens 100.0
d1xkea1118 Ran-binding protein 2 {Human (Homo sapiens) [TaxId 100.0
d2crfa1137 Ran binding protein 3 {Human (Homo sapiens) [TaxId 99.98
d1rrpb_134 Nuclear pore complex protein Nup358 {Human (Homo s 99.96
d1k5db_146 Ran-binding protein 1, Ranbp1 {Human (Homo sapiens 99.96
d1xkea1118 Ran-binding protein 2 {Human (Homo sapiens) [TaxId 99.94
d2crfa1137 Ran binding protein 3 {Human (Homo sapiens) [TaxId 99.94
d1evha_111 Enabled {Mouse (Mus musculus) [TaxId: 10090]} 99.91
d1egxa_115 Vasodilator-stimulated phosphoprotein (VASP) {Huma 99.9
d1evha_111 Enabled {Mouse (Mus musculus) [TaxId: 10090]} 99.82
d1egxa_115 Vasodilator-stimulated phosphoprotein (VASP) {Huma 99.79
d1mkea1114 Actin regulatory protein WASP {Rat (Rattus norvegi 98.56
d1mkea1114 Actin regulatory protein WASP {Rat (Rattus norvegi 98.33
d1i2ha_145 Homer {Rat (Rattus norvegicus) [TaxId: 10116]} 97.96
d1i2ha_145 Homer {Rat (Rattus norvegicus) [TaxId: 10116]} 97.19
d1xoda1114 Sprouty-related, EVH1 domain-containing protein 1, 96.98
d1xoda1114 Sprouty-related, EVH1 domain-containing protein 1, 96.34
>d1rrpb_ b.55.1.3 (B:) Nuclear pore complex protein Nup358 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Ran-binding domain
domain: Nuclear pore complex protein Nup358
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.3e-42  Score=296.65  Aligned_cols=124  Identities=52%  Similarity=0.999  Sum_probs=120.3

Q ss_pred             CceeccCCCCccccccCccccEEEEEEeeeEEeecc--cccceeeeEEEEEEEeCCCCcEEEEEEeCCeeeeEeccccCc
Q psy15646        163 DFKPIIPLPDEVPVTTGEENETVLFEQRAKLYRFVD--KEWKERGVGQLKLLKNKDTGKVRLLMRRDIVHKICANHFLHQ  240 (388)
Q Consensus       163 ~f~Piv~LP~~vev~TGEEdEe~lF~~RaKLyrf~~--k~WKERGvG~LKIlk~k~tgk~RLLMRrdqv~KV~lN~~I~~  240 (388)
                      ||+|||+||++|+++||||||++||+.|||||+|++  ++|+|||+|+||||++++++++|||||+|++++|||||.|++
T Consensus         1 ~f~p~~~l~~~v~~~tgEE~E~~if~~r~KL~~~~~~~~~WkerGvG~lkil~~~~t~~~RlvmR~d~~~kv~lN~~i~~   80 (134)
T d1rrpb_           1 HFEPVVPLPDKIEVKTGEEDEEEFFCNRAKLFRFDVESKEWKERGIGNVKILRHKTSGKIRLLMRREQVLKICANHYISP   80 (134)
T ss_dssp             CCCCSSCCCCCCCCCCSCCSEEEEEEEEEEEEEECSSSSCEEEEEEEEEEEEEESSSCCCEEEEECTTTCCEEECCBCCS
T ss_pred             CccCcccCCCccceecCccCcEEEEEEeeEEEEEcCCCCceeeeeEEEEEEEEcCCCCcEEEEEEEcCCCcEEEEEEECC
Confidence            799999999999999999999999999999999974  799999999999999999999999999999999999999999


Q ss_pred             CceEeecCCCCcEEEEEeecCCccccccceeeeecCChhhHHhhcc
Q psy15646        241 DMELKPMPNTKQAYIWFAQDYADEVVSDEQLCAKFKLPEDAERFRS  286 (388)
Q Consensus       241 ~M~~~~~~~s~ks~~w~a~D~aDee~k~et~~IRFKt~e~A~eFks  286 (388)
                      +|+++++.++.++|+|++.|++|++.++++|+|||+++++|++|+.
T Consensus        81 ~~~~~~~~~~~~~~~~~~~d~~~~~~k~~~~~lrfk~~e~a~~f~~  126 (134)
T d1rrpb_          81 DMKLTPNAGSDRSFVWHALDYADELPKPEQLAIRFKTPEEAALFKC  126 (134)
T ss_dssp             SCCCBCSTTCTTEEEEEEEECTTSSCEEEEEEEECSSHHHHHHHHH
T ss_pred             CcEEeecCCCceEEEEEeeccCCCCCcEEEEEEEECCHHHHHHHHH
Confidence            9999999889999999999999999999999999999999999975
>d1k5db_ b.55.1.3 (B:) Ran-binding protein 1, Ranbp1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xkea1 b.55.1.3 (A:7-124) Ran-binding protein 2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2crfa1 b.55.1.3 (A:8-144) Ran binding protein 3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1rrpb_ b.55.1.3 (B:) Nuclear pore complex protein Nup358 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1k5db_ b.55.1.3 (B:) Ran-binding protein 1, Ranbp1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xkea1 b.55.1.3 (A:7-124) Ran-binding protein 2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2crfa1 b.55.1.3 (A:8-144) Ran binding protein 3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1evha_ b.55.1.4 (A:) Enabled {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1egxa_ b.55.1.4 (A:) Vasodilator-stimulated phosphoprotein (VASP) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1evha_ b.55.1.4 (A:) Enabled {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1egxa_ b.55.1.4 (A:) Vasodilator-stimulated phosphoprotein (VASP) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1mkea1 b.55.1.4 (A:31-144) Actin regulatory protein WASP {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1mkea1 b.55.1.4 (A:31-144) Actin regulatory protein WASP {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1i2ha_ b.55.1.4 (A:) Homer {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1i2ha_ b.55.1.4 (A:) Homer {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1xoda1 b.55.1.4 (A:10-123) Sprouty-related, EVH1 domain-containing protein 1, Spred-1 {Western clawed frog (Xenopus tropicalis) [TaxId: 8364]} Back     information, alignment and structure
>d1xoda1 b.55.1.4 (A:10-123) Sprouty-related, EVH1 domain-containing protein 1, Spred-1 {Western clawed frog (Xenopus tropicalis) [TaxId: 8364]} Back     information, alignment and structure