Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
ID Alignment Graph Length
Definition
E-value Query 96
cd01921 166
cd01921, cyclophilin_RRM, cyclophilin_RRM: cycloph
4e-37 cd01927 148
cd01927, cyclophilin_WD40, cyclophilin_WD40: cyclo
1e-20 pfam00160 144
pfam00160, Pro_isomerase, Cyclophilin type peptidy
1e-19 cd01923 159
cd01923, cyclophilin_RING, cyclophilin_RING: cyclo
7e-19 cd01928 153
cd01928, Cyclophilin_PPIL3_like, Cyclophilin_PPIL3
4e-18 cd01925 171
cd01925, cyclophilin_CeCYP16-like, cyclophilin_CeC
4e-18 cd00317 146
cd00317, cyclophilin, cyclophilin: cyclophilin-typ
1e-17 cd01922 146
cd01922, cyclophilin_SpCYP2_like, cyclophilin_SpCY
1e-17 cd01926 164
cd01926, cyclophilin_ABH_like, cyclophilin_ABH_lik
3e-16 COG0652 158
COG0652, PpiB, Peptidyl-prolyl cis-trans isomerase
3e-15 PTZ00060 183
PTZ00060, PTZ00060, cyclophilin; Provisional
9e-14 PLN03149 186
PLN03149, PLN03149, peptidyl-prolyl isomerase H (c
1e-07 PTZ00221 249
PTZ00221, PTZ00221, cyclophilin; Provisional
2e-04 PRK05972 860
PRK05972, ligD, ATP-dependent DNA ligase; Reviewed
0.001
>gnl|CDD|238902 cd01921, cyclophilin_RRM, cyclophilin_RRM: cyclophilin-type peptidylprolyl cis- trans isomerase domain occuring with a C-terminal RNA recognition motif domain (RRM)
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Score = 122 bits (308), Expect = 4e-37
Identities = 54/96 (56%), Positives = 71/96 (73%), Gaps = 1/96 (1%)
Query: 2 NFIAQTGDPTGVGTGGSSVFGLAYGDHARYYEAETQPKIPHSKPGLVSMVHCGEGLLGSQ 61
+FIAQTGDPTG G GG S++ YG AR++E E P + HSK G VSMV+ G+ L GSQ
Sbjct: 45 DFIAQTGDPTGTGAGGESIYSQLYGRQARFFEPEILPLLKHSKKGTVSMVNAGDNLNGSQ 104
Query: 62 FFITLGPDLKSLN-EHCVFGEIAEGFDILLKLNNAI 96
F+ITLG +L L+ +H VFG++ EGFD+L K+N+AI
Sbjct: 105 FYITLGENLDYLDGKHTVFGQVVEGFDVLEKINDAI 140
This subfamily of the cyclophilin domain family contains a number of eukaryotic cyclophilins having the RRM domain including the nuclear proteins: human hCyP-57, Arabidopsis thaliana AtCYP59, Caenorhabditis elegans CeCyP-44 and Paramecium tetrurelia Kin241. The Kin241 protein has been shown to have a role in cell morphogenesis. Length = 166
>gnl|CDD|238908 cd01927, cyclophilin_WD40, cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain
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Score = 79.8 bits (197), Expect = 1e-20
Identities = 37/94 (39%), Positives = 53/94 (56%), Gaps = 7/94 (7%)
Query: 2 NFIAQTGDPTGVGTGGSSVFGLAYGDHARYYEAETQPKIPHSKPGLVSMVHCGEGLLGSQ 61
F+ QTGDPTG GTGG S++G + +E E P + H +P +SM + G GSQ
Sbjct: 45 GFMIQTGDPTGDGTGGESIWG-------KEFEDEFSPSLKHDRPYTLSMANAGPNTNGSQ 97
Query: 62 FFITLGPDLKSLNEHCVFGEIAEGFDILLKLNNA 95
FFIT N+H VFG + +G D++ ++ N
Sbjct: 98 FFITTVATPWLDNKHTVFGRVVKGMDVVQRIENV 131
This group consists of several hypothetical and putative eukaryotic and bacterial proteins which have a cyclophilin domain and a WD40 domain. Function of the protein is not known. Length = 148
>gnl|CDD|215759 pfam00160, Pro_isomerase, Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
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Score = 77.3 bits (191), Expect = 1e-19
Identities = 38/95 (40%), Positives = 47/95 (49%), Gaps = 14/95 (14%)
Query: 2 NFIAQTGDPTGVGTGGSSVFGLAYGDHARYYEAETQPKIPHSKPGLVSMVHCGEGLLGSQ 61
F+ Q GDPTG GTGG R E K+ H K G +SM G GSQ
Sbjct: 47 GFMIQGGDPTGPGTGG-----------KRSIPDEFVSKLKH-KRGTLSMARSGPNSAGSQ 94
Query: 62 FFITLGPDLKSLN-EHCVFGEIAEGFDILLKLNNA 95
FFITLG D L+ + VFG + EG D++ K+
Sbjct: 95 FFITLG-DAPHLDGGYTVFGRVVEGMDVVEKIEKV 128
The peptidyl-prolyl cis-trans isomerases, also known as cyclophilins, share this domain of about 109 amino acids. Cyclophilins have been found in all organisms studied so far and catalyze peptidyl-prolyl isomerisation during which the peptide bond preceding proline (the peptidyl-prolyl bond) is stabilised in the cis conformation. Mammalian cyclophilin A (CypA) is a major cellular target for the immunosuppressive drug cyclosporin A (CsA). Other roles for cyclophilins may include chaperone and cell signalling function. Length = 144
>gnl|CDD|238904 cd01923, cyclophilin_RING, cyclophilin_RING: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a modified RING finger domain
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Score = 75.5 bits (186), Expect = 7e-19
Identities = 35/94 (37%), Positives = 48/94 (51%), Gaps = 7/94 (7%)
Query: 1 ANFIAQTGDPTGVGTGGSSVFGLAYGDHARYYEAETQPKIPHSKPGLVSMVHCGEGLLGS 60
NF+ Q GDPTG G GG S++G + D E +P + H G++SM + G GS
Sbjct: 46 RNFMIQGGDPTGTGRGGESIWGKPFKD-------EFKPNLSHDGRGVLSMANSGPNTNGS 98
Query: 61 QFFITLGPDLKSLNEHCVFGEIAEGFDILLKLNN 94
QFFIT +H VFG + G + L + N
Sbjct: 99 QFFITYRSCKHLDGKHTVFGRVVGGLETLEAMEN 132
This group includes the nuclear proteins, Human hCyP-60 and Caenorhabditis elegans MOG-6 which, compared to the archetypal cyclophilin Human cyclophilin A exhibit reduced peptidylprolyl cis- trans isomerase activity and lack a residue important for cyclophilin binding. Human hCyP-60 has been shown to physically interact with the proteinase inhibitor peptide eglin c and; C. elegans MOG-6 to physically interact with MEP-1, a nuclear zinc finger protein. MOG-6 has been shown to function in germline sex determination. Length = 159
>gnl|CDD|238909 cd01928, Cyclophilin_PPIL3_like, Cyclophilin_PPIL3_like
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Score = 73.2 bits (180), Expect = 4e-18
Identities = 36/94 (38%), Positives = 52/94 (55%), Gaps = 9/94 (9%)
Query: 2 NFIAQTGDPTGVGTGGSSVFGLAYGDHARYYEAETQPKIPHSKPGLVSMVHCGEGLLGSQ 61
F+ QTGDPTG G GG S++G + +E E + + H G+VSM + G GSQ
Sbjct: 48 GFMVQTGDPTGTGKGGESIWG-------KKFEDEFRETLKHDSRGVVSMANNGPNTNGSQ 100
Query: 62 FFITLGPDLKSLN-EHCVFGEIAEGFDILLKLNN 94
FFIT L+ ++ VFG++ +GF+ L L
Sbjct: 101 FFITYAK-QPHLDGKYTVFGKVIDGFETLDTLEK 133
Proteins similar to Human cyclophilin-like peptidylprolyl cis- trans isomerase (PPIL3). Members of this family lack a key residue important for cyclosporin binding: the tryptophan residue corresponding to W121 in human hCyP-18a; most members have a histidine at this position. The exact function of the protein is not known. Length = 153
>gnl|CDD|238906 cd01925, cyclophilin_CeCYP16-like, cyclophilin_CeCYP16-like: cyclophilin-type peptidylprolyl cis- trans isomerase) (PPIase) domain similar to Caenorhabditis elegans cyclophilin 16
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Score = 73.9 bits (182), Expect = 4e-18
Identities = 38/96 (39%), Positives = 52/96 (54%), Gaps = 10/96 (10%)
Query: 2 NFIAQTGDPTGVGTGGSSVFGLAYGDHARYYEAETQPKIPHSKPGLVSMVHCGEGLLGSQ 61
FI Q GDPTG GTGG S++G + D E ++ ++ GLV M + G+ GSQ
Sbjct: 53 GFIIQGGDPTGTGTGGESIYGEPFKD-------EFHSRLRFNRRGLVGMANAGDDSNGSQ 105
Query: 62 FFITLGPDLKSLNEHCVFGEIAEGFDI--LLKLNNA 95
FF TL + N+H +FG++ G I LLKL
Sbjct: 106 FFFTLDKADELNNKHTLFGKV-TGDTIYNLLKLAEV 140
C. elegans CeCYP-16, compared to the archetypal cyclophilin Human cyclophilin A has, a reduced peptidylprolyl cis- trans isomerase activity, is cyclosporin insensitive and shows an altered substrate preference favoring, hydrophobic, acidic or amide amino acids. Most members of this subfamily have a glutamate residue in the active site at the position equivalent to a tryptophan (W121 in Human cyclophilin A), which has been shown to be important for cyclophilin binding. Length = 171
>gnl|CDD|238194 cd00317, cyclophilin, cyclophilin: cyclophilin-type peptidylprolyl cis- trans isomerases
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Score = 71.9 bits (177), Expect = 1e-17
Identities = 34/94 (36%), Positives = 45/94 (47%), Gaps = 8/94 (8%)
Query: 2 NFIAQTGDPTGVGTGGSSVFGLAYGDHARYYEAETQPKIPHSKPGLVSMVHCGEGLLGSQ 61
F+ Q GDPTG G GGS + E P H + G +SM + G GSQ
Sbjct: 45 GFMIQGGDPTGTGGGGS--------GPGYKFPDENFPLKYHHRRGTLSMANAGPNTNGSQ 96
Query: 62 FFITLGPDLKSLNEHCVFGEIAEGFDILLKLNNA 95
FFIT P +H VFG++ EG D++ K+
Sbjct: 97 FFITTAPTPHLDGKHTVFGKVVEGMDVVDKIERG 130
This family contains eukaryotic, bacterial and archeal proteins which exhibit a peptidylprolyl cis- trans isomerases activity (PPIase, Rotamase) and in addition bind the immunosuppressive drug cyclosporin (CsA). Immunosuppression in vertebrates is believed to be the result of the cyclophilin A-cyclosporin protein drug complex binding to and inhibiting the protein-phosphatase calcineurin. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. Cyclophilins are a diverse family in terms of function and have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. This group contains human cyclophilin 40, a co-chaperone of the hsp90 chaperone system; human cyclophilin A, a chaperone in the HIV-1 infectious process and; human cyclophilin H, a component of the U4/U6 snRNP, whose isomerization or chaperoning activities may play a role in RNA splicing. . Length = 146
>gnl|CDD|238903 cd01922, cyclophilin_SpCYP2_like, cyclophilin_SpCYP2_like: cyclophilin 2-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to Schizosaccharomyces pombe cyp-2
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Score = 71.8 bits (176), Expect = 1e-17
Identities = 33/93 (35%), Positives = 54/93 (58%), Gaps = 7/93 (7%)
Query: 1 ANFIAQTGDPTGVGTGGSSVFGLAYGDHARYYEAETQPKIPHSKPGLVSMVHCGEGLLGS 60
+F+ Q GDPTG G GG+S++G + +E E P++ H+ G++SM + G GS
Sbjct: 44 KDFMIQGGDPTGTGRGGASIYG-------KKFEDEIHPELKHTGAGILSMANAGPNTNGS 96
Query: 61 QFFITLGPDLKSLNEHCVFGEIAEGFDILLKLN 93
QFFITL P +H +FG +++G ++ +
Sbjct: 97 QFFITLAPTPWLDGKHTIFGRVSKGMKVIENMV 129
These proteins bind their respective SNW chromatin binding protein in autologous systems, in a CsA independent manner indicating interaction with a surface outside the PPIase active site. SNW proteins play a basic and broad range role in signaling. Length = 146
>gnl|CDD|238907 cd01926, cyclophilin_ABH_like, cyclophilin_ABH_like: Cyclophilin A, B and H-like cyclophilin-type peptidylprolyl cis- trans isomerase (PPIase) domain
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Score = 68.8 bits (169), Expect = 3e-16
Identities = 39/98 (39%), Positives = 53/98 (54%), Gaps = 17/98 (17%)
Query: 2 NFIAQTGDPT-GVGTGGSSVFGLAYGDHARYYEAETQPKIPHSKPGLVSMVHCGEGLLGS 60
+F+ Q GD T G GTGG S++G + D K+ H+ PGL+SM + G GS
Sbjct: 61 DFMIQGGDFTRGNGTGGKSIYGEKFPDENF--------KLKHTGPGLLSMANAGPNTNGS 112
Query: 61 QFFITLGP----DLKSLNEHCVFGEIAEGFDILLKLNN 94
QFFIT D K H VFG++ EG D++ K+ N
Sbjct: 113 QFFITTVKTPWLDGK----HVVFGKVVEGMDVVKKIEN 146
This family represents the archetypal cystolic cyclophilin similar to human cyclophilins A, B and H. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. These enzymes have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. As cyclophilins, Human hCyP-A, human cyclophilin-B (hCyP-19), S. cerevisiae Cpr1 and C. elegans Cyp-3, are inhibited by the immunosuppressive drug cyclopsporin A (CsA). CsA binds to the PPIase active site. Cyp-3. S. cerevisiae Cpr1 interacts with the Rpd3 - Sin3 complex and in addition is a component of the Set3 complex. S. cerevisiae Cpr1 has also been shown to have a role in Zpr1p nuclear transport. Human cyclophilin H associates with the [U4/U6.U5] tri-snRNP particles of the splicesome. Length = 164
>gnl|CDD|223725 COG0652, PpiB, Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family [Posttranslational modification, protein turnover, chaperones]
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Score = 66.1 bits (162), Expect = 3e-15
Identities = 34/98 (34%), Positives = 47/98 (47%), Gaps = 15/98 (15%)
Query: 2 NFIAQTGDPTG-VGTGGSSVFGLAYGDHARYYEAETQPKIPH-SKPGLVSMVHCGE-GLL 58
F+ Q GDPTG GTGG ++ E K G +SM G+
Sbjct: 47 GFMIQGGDPTGGDGTGGPGPP----------FKDENFALNGDRHKRGTLSMARAGDPNSN 96
Query: 59 GSQFFITLGPDLKSLNE-HCVFGEIAEGFDILLKLNNA 95
GSQFFIT+ D L+ + VFG++ EG D++ K+ N
Sbjct: 97 GSQFFITVV-DNPFLDGKYTVFGQVVEGMDVVDKIKNG 133
>gnl|CDD|240249 PTZ00060, PTZ00060, cyclophilin; Provisional
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Score = 62.9 bits (153), Expect = 9e-14
Identities = 34/89 (38%), Positives = 48/89 (53%), Gaps = 9/89 (10%)
Query: 2 NFIAQTGDPT-GVGTGGSSVFGLAYGDHARYYEAETQPKIPHSKPGLVSMVHCGEGLLGS 60
F+ Q GD T GTGG S++G + D K+ H +PGL+SM + G GS
Sbjct: 77 QFMCQGGDITNHNGTGGESIYGRKFTDE--------NFKLKHDQPGLLSMANAGPNTNGS 128
Query: 61 QFFITLGPDLKSLNEHCVFGEIAEGFDIL 89
QFFIT P +H VFG++ EG +++
Sbjct: 129 QFFITTVPCPWLDGKHVVFGKVIEGMEVV 157
>gnl|CDD|178694 PLN03149, PLN03149, peptidyl-prolyl isomerase H (cyclophilin H); Provisional
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Score = 46.8 bits (111), Expect = 1e-07
Identities = 33/95 (34%), Positives = 49/95 (51%), Gaps = 10/95 (10%)
Query: 2 NFIAQTGD-PTGVGTGGSSVFGLAYGDHARYYEAETQPKIPHSKPGLVSMVHCGEGLLGS 60
+F+ Q GD G GTG S++G + D + A+ H+ PGL+SM + G G
Sbjct: 79 DFMIQGGDFLKGDGTGCVSIYGSKFEDEN--FIAK------HTGPGLLSMANSGPNTNGC 130
Query: 61 QFFITLGPDLKSLNEHCVFGEI-AEGFDILLKLNN 94
QFFIT N+H VFG + +G ++ K+ N
Sbjct: 131 QFFITCAKCDWLDNKHVVFGRVLGDGLLVVRKIEN 165
>gnl|CDD|140248 PTZ00221, PTZ00221, cyclophilin; Provisional
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Score = 38.3 bits (89), Expect = 2e-04
Identities = 21/55 (38%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
Query: 39 KIPHSKPGLVSMVHCGEGLLGSQFFITLGPDLKSLN-EHCVFGEIAEGFDILLKL 92
+ H++ GL++M+ G GS F ITLGP SL+ + VFG+ + +L KL
Sbjct: 143 RHRHTERGLLTMISEGPHTSGSVFGITLGPS-PSLDFKQVVFGKAVDDLSLLEKL 196
>gnl|CDD|235658 PRK05972, ligD, ATP-dependent DNA ligase; Reviewed
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Score = 35.7 bits (83), Expect = 0.001
Identities = 17/37 (45%), Positives = 21/37 (56%)
Query: 27 DHARYYEAETQPKIPHSKPGLVSMVHCGEGLLGSQFF 63
D ARYYEA +PH K VS+V +G+ G FF
Sbjct: 591 DLARYYEAVADWMLPHLKGRPVSLVRAPDGIGGELFF 627
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
>KOG0880|consensus
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Probab=100.00 E-value=1.5e-38 Score=217.41 Aligned_cols=86 Identities=44% Similarity=0.759 Sum_probs=82.0
Q ss_pred CCeEEEeCCCC-CCCCCCCccccCccCCCCCcCCCCcCCCCCCCCCceEEEeecCCCCccceEEEEeCCCCCCCC-CceE
Q psy15677 1 ANFIAQTGDPT-GVGTGGSSVFGLAYGDHARYYEAETQPKIPHSKPGLVSMVHCGEGLLGSQFFITLGPDLKSLN-EHCV 78 (96)
Q Consensus 1 ~~f~iQgGD~~-~~g~gg~~~~~~~~~~~~~~~~~e~~~~l~h~~~G~lsma~~~~~~~~sqFfI~~~~~~~~ld-~~~v 78 (96)
|||||||||++ ++|+|+.|+|| ..|+|||+ .|+|++||.|||||.|||+||||||||+.. .+||| +|+|
T Consensus 95 ~nfmIQGGd~t~g~gtGg~SIyG-------~~F~DENf-~LkH~rpG~lSMAn~GpDtNGsQFfItT~~-t~wLDGkhVV 165 (217)
T KOG0880|consen 95 PNFMIQGGDFTKGDGTGGKSIYG-------EKFPDENF-KLKHDRPGRLSMANAGPDTNGSQFFITTVK-TPWLDGKHVV 165 (217)
T ss_pred cCceeecCccccCCCCCCeEeec-------CCCCCccc-eeecCCCceEeeeccCCCCCCceEEEEecC-CccccCceeE
Confidence 79999999999 88999999999 67999996 999999999999999999999999999986 89999 9999
Q ss_pred EEEEEcCHHHHHHHHhh
Q psy15677 79 FGEIAEGFDILLKLNNA 95 (96)
Q Consensus 79 FG~Vi~G~dvl~~I~~~ 95 (96)
||+|++|||+|.+|+.+
T Consensus 166 FGqVl~Gmdvv~~Ie~~ 182 (217)
T KOG0880|consen 166 FGQVLEGMDVVRKIENV 182 (217)
T ss_pred EeeehhhHHHHHHHHhc
Confidence 99999999999999864
>KOG0546|consensus
Back Show alignment and domain information
Probab=100.00 E-value=1.5e-38 Score=232.93 Aligned_cols=86 Identities=40% Similarity=0.726 Sum_probs=82.5
Q ss_pred CCeEEEeCCCC-CCCCCCCccccCccCCCCCcCCCCcCCCCCCCCCceEEEeecCCCCccceEEEEeCCCCCCCC-CceE
Q psy15677 1 ANFIAQTGDPT-GVGTGGSSVFGLAYGDHARYYEAETQPKIPHSKPGLVSMVHCGEGLLGSQFFITLGPDLKSLN-EHCV 78 (96)
Q Consensus 1 ~~f~iQgGD~~-~~g~gg~~~~~~~~~~~~~~~~~e~~~~l~h~~~G~lsma~~~~~~~~sqFfI~~~~~~~~ld-~~~v 78 (96)
++|||||||++ |+|+||.|||| .+|+||++ .|+|+++++|||||.||||||||||||+.+ +|||| +|+|
T Consensus 71 K~FMiQgGDfs~gnGtGGeSIYG-------~~FdDEnF-~lKHdrpflLSMAN~GpNTNgSQFFITT~p-~PHLdGkHVV 141 (372)
T KOG0546|consen 71 KNFMIQGGDFSEGNGTGGESIYG-------EKFDDENF-ELKHDRPFLLSMANRGPNTNGSQFFITTVP-TPHLDGKHVV 141 (372)
T ss_pred ecceeeccccccCCCCCcccccc-------cccccccc-eeccCcchhhhhhcCCCCCCCcceEEeCCC-CCCcCCceeE
Confidence 58999999999 99999999999 68999986 999999999999999999999999999997 99999 9999
Q ss_pred EEEEEcCHHHHHHHHhh
Q psy15677 79 FGEIAEGFDILLKLNNA 95 (96)
Q Consensus 79 FG~Vi~G~dvl~~I~~~ 95 (96)
||+||.|++||+.|+.+
T Consensus 142 FGqVI~G~~VVr~IEn~ 158 (372)
T KOG0546|consen 142 FGQVIKGKEVVREIENL 158 (372)
T ss_pred EeeEeechhHHHHHhcc
Confidence 99999999999999974
>KOG0881|consensus
Back Show alignment and domain information
Probab=100.00 E-value=9.6e-38 Score=201.71 Aligned_cols=86 Identities=38% Similarity=0.824 Sum_probs=82.2
Q ss_pred CCeEEEeCCCCCCCCCCCccccCccCCCCCcCCCCcCCCCCCCCCceEEEeecCCCCccceEEEEeCCCCCCCC-CceEE
Q psy15677 1 ANFIAQTGDPTGVGTGGSSVFGLAYGDHARYYEAETQPKIPHSKPGLVSMVHCGEGLLGSQFFITLGPDLKSLN-EHCVF 79 (96)
Q Consensus 1 ~~f~iQgGD~~~~g~gg~~~~~~~~~~~~~~~~~e~~~~l~h~~~G~lsma~~~~~~~~sqFfI~~~~~~~~ld-~~~vF 79 (96)
++||||||||+|+|.||.|||| ..|+||..+.|+|..+|+|||||.+||+|+|||||||.+ .+||| +||+|
T Consensus 56 ~DFmiQGGDPTGTGRGGaSIYG-------~kF~DEi~~dLkhTGAGILsMANaGPnTNgSQFFiTLAP-t~~LDGKHTIF 127 (164)
T KOG0881|consen 56 KDFMIQGGDPTGTGRGGASIYG-------DKFEDEIHSDLKHTGAGILSMANAGPNTNGSQFFITLAP-TQWLDGKHTIF 127 (164)
T ss_pred hhheeecCCCCCCCCCcccccc-------chhhhhhhhhhcccchhhhhhhccCCCCCCceEEEEecC-ccccCCcceee
Confidence 6899999999999999999999 569999999999999999999999999999999999997 89999 99999
Q ss_pred EEEEcCHHHHHHHHh
Q psy15677 80 GEIAEGFDILLKLNN 94 (96)
Q Consensus 80 G~Vi~G~dvl~~I~~ 94 (96)
|||..||+|+++|-.
T Consensus 128 GRV~~Gm~vikr~G~ 142 (164)
T KOG0881|consen 128 GRVCSGMEVIKRMGM 142 (164)
T ss_pred hhhhhhHHHHHhhcc
Confidence 999999999998854
>KOG0882|consensus
Back Show alignment and domain information
Probab=100.00 E-value=2.7e-35 Score=220.69 Aligned_cols=87 Identities=43% Similarity=0.788 Sum_probs=84.0
Q ss_pred CCeEEEeCCCCCCCCCCCccccCccCCCCCcCCCCcCCCCCCCCCceEEEeecCCCCccceEEEEeCCCCCCCC-CceEE
Q psy15677 1 ANFIAQTGDPTGVGTGGSSVFGLAYGDHARYYEAETQPKIPHSKPGLVSMVHCGEGLLGSQFFITLGPDLKSLN-EHCVF 79 (96)
Q Consensus 1 ~~f~iQgGD~~~~g~gg~~~~~~~~~~~~~~~~~e~~~~l~h~~~G~lsma~~~~~~~~sqFfI~~~~~~~~ld-~~~vF 79 (96)
++||||+|||.|+|+||.|||| +-|+||+++.|+|++|-+|||||+|||+||||||||..+ .|||| +||||
T Consensus 451 k~fmiqtgdp~g~gtggesiwg-------~dfedefh~~lrhdrpft~smanag~ntngsqffit~~~-tpwld~khtvf 522 (558)
T KOG0882|consen 451 KGFMIQTGDPLGDGTGGESIWG-------KDFEDEFHPNLRHDRPFTVSMANAGPNTNGSQFFITTVP-TPWLDGKHTVF 522 (558)
T ss_pred hhheeecCCCCCCCCCCccccc-------ccchhhcCcccccCCCceEEecccCCCCCCceEEEEecC-ccccCCcceeE
Confidence 5899999999999999999999 569999999999999999999999999999999999997 89999 99999
Q ss_pred EEEEcCHHHHHHHHhh
Q psy15677 80 GEIAEGFDILLKLNNA 95 (96)
Q Consensus 80 G~Vi~G~dvl~~I~~~ 95 (96)
|||..|||||++|+++
T Consensus 523 grv~~gm~vvqri~~v 538 (558)
T KOG0882|consen 523 GRVTAGMDVVQRIEQV 538 (558)
T ss_pred EEEecchhHHhHhhhc
Confidence 9999999999999985
>KOG0883|consensus
Back Show alignment and domain information
Probab=100.00 E-value=3.1e-35 Score=217.53 Aligned_cols=86 Identities=41% Similarity=0.772 Sum_probs=83.4
Q ss_pred CeEEEeCCCCCCCCCCCccccCccCCCCCcCCCCcCCCCCCCCCceEEEeecCCCCccceEEEEeCCCCCCCC-CceEEE
Q psy15677 2 NFIAQTGDPTGVGTGGSSVFGLAYGDHARYYEAETQPKIPHSKPGLVSMVHCGEGLLGSQFFITLGPDLKSLN-EHCVFG 80 (96)
Q Consensus 2 ~f~iQgGD~~~~g~gg~~~~~~~~~~~~~~~~~e~~~~l~h~~~G~lsma~~~~~~~~sqFfI~~~~~~~~ld-~~~vFG 80 (96)
+||||||||+|+|.||.|||| ++|.||+.+.|+|+.||+|||||+|||+|||||||++++ +.+|| +|||||
T Consensus 325 nFmiQGGDPTGTG~GGeSiWg-------KpFkDEf~~~l~H~gRGvlSMANsGpnTNgSQFFItyrs-ckhLd~KHTIFG 396 (518)
T KOG0883|consen 325 NFMIQGGDPTGTGRGGESIWG-------KPFKDEFCSNLSHDGRGVLSMANSGPNTNGSQFFITYRS-CKHLDNKHTIFG 396 (518)
T ss_pred HHeeeCCCCCCCCCCCccccC-------CccccccCCCCCcCCcceEeeccCCCCCCCceEEEEecc-hhhccccceeee
Confidence 799999999999999999999 689999999999999999999999999999999999996 89999 999999
Q ss_pred EEEcCHHHHHHHHhh
Q psy15677 81 EIAEGFDILLKLNNA 95 (96)
Q Consensus 81 ~Vi~G~dvl~~I~~~ 95 (96)
||+.|+|+|.+|+++
T Consensus 397 rvVGGldtL~amEnv 411 (518)
T KOG0883|consen 397 RVVGGLDTLTAMENV 411 (518)
T ss_pred eeeccHHHHHHHhcC
Confidence 999999999999976
>KOG0884|consensus
Back Show alignment and domain information
Probab=100.00 E-value=4.1e-35 Score=188.65 Aligned_cols=87 Identities=40% Similarity=0.711 Sum_probs=83.4
Q ss_pred CCeEEEeCCCCCCCCCCCccccCccCCCCCcCCCCcCCCCCCCCCceEEEeecCCCCccceEEEEeCCCCCCCC-CceEE
Q psy15677 1 ANFIAQTGDPTGVGTGGSSVFGLAYGDHARYYEAETQPKIPHSKPGLVSMVHCGEGLLGSQFFITLGPDLKSLN-EHCVF 79 (96)
Q Consensus 1 ~~f~iQgGD~~~~g~gg~~~~~~~~~~~~~~~~~e~~~~l~h~~~G~lsma~~~~~~~~sqFfI~~~~~~~~ld-~~~vF 79 (96)
||||+|+|||+..|.||.|||| ..|+||....|+|+.||+|||||++|++|+||||||.+. .|+|| +|+||
T Consensus 47 ~~f~v~~~~~~~tgrgg~siwg-------~~fede~~~~lkh~~rg~vsmanngp~tn~sqffity~k-q~hldmkytvf 118 (161)
T KOG0884|consen 47 KGFMVQTGDPTHTGRGGNSIWG-------KKFEDEYSEYLKHNVRGVVSMANNGPNTNGSQFFITYGK-QPHLDMKYTVF 118 (161)
T ss_pred CCcEEEeCCCCCCCCCCccccC-------CcchHHHHHHHhhccceeEEcccCCCCCCCceEEEEecC-CCccceeEeee
Confidence 7999999999999999999999 679999998999999999999999999999999999995 89999 99999
Q ss_pred EEEEcCHHHHHHHHhh
Q psy15677 80 GEIAEGFDILLKLNNA 95 (96)
Q Consensus 80 G~Vi~G~dvl~~I~~~ 95 (96)
|+||+|+|.|++|+++
T Consensus 119 gkvidg~etldele~l 134 (161)
T KOG0884|consen 119 GKVIDGLETLDELEKL 134 (161)
T ss_pred eeeccchhhHHHHhhc
Confidence 9999999999999874
>COG0652 PpiB Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family [Posttranslational modification, protein turnover, chaperones]
Back Show alignment and domain information
Probab=100.00 E-value=7.6e-34 Score=190.18 Aligned_cols=83 Identities=39% Similarity=0.641 Sum_probs=73.8
Q ss_pred CCeEEEeCCCCCC-CCCCCccccCccCCCCCcCCCCcCCCCCCCC--CceEEEeecC-CCCccceEEEEeCCCCCCCC-C
Q psy15677 1 ANFIAQTGDPTGV-GTGGSSVFGLAYGDHARYYEAETQPKIPHSK--PGLVSMVHCG-EGLLGSQFFITLGPDLKSLN-E 75 (96)
Q Consensus 1 ~~f~iQgGD~~~~-g~gg~~~~~~~~~~~~~~~~~e~~~~l~h~~--~G~lsma~~~-~~~~~sqFfI~~~~~~~~ld-~ 75 (96)
|+||||||||+++ |.++.+ +.|++|+. ...|.+ +|+|||||++ |++|+|||||++.+ .|||| +
T Consensus 46 ~~FmiQgGd~~~~~g~gg~~----------~~f~~E~~-~~~~~~~~~G~lsMA~~g~P~t~~SQFFI~~~~-~~~Ld~~ 113 (158)
T COG0652 46 PGFMIQGGDPTGGDGTGGPG----------PPFKDENF-ALNGDRHKRGTLSMARAGDPNSNGSQFFITVVD-NPFLDGK 113 (158)
T ss_pred cCceeecCCCCCCCCCCCCC----------CCCccccc-ccccccCCcceEeEcccCCcCCccCeEEEEecC-CcccCCC
Confidence 7999999999966 888877 45899975 444555 8999999999 99999999999996 89999 9
Q ss_pred ceEEEEEEcCHHHHHHHHhh
Q psy15677 76 HCVFGEIAEGFDILLKLNNA 95 (96)
Q Consensus 76 ~~vFG~Vi~G~dvl~~I~~~ 95 (96)
|+|||+|++|||||++|++.
T Consensus 114 ytVFG~Vv~GmdvvdkI~~~ 133 (158)
T COG0652 114 YTVFGQVVEGMDVVDKIKNG 133 (158)
T ss_pred CcEEEEEehhHHHHHHHHcC
Confidence 99999999999999999873
>KOG0879|consensus
Back Show alignment and domain information
Probab=100.00 E-value=2.1e-34 Score=188.03 Aligned_cols=86 Identities=38% Similarity=0.685 Sum_probs=81.4
Q ss_pred CCeEEEeCCCC-CCCCCCCccccCccCCCCCcCCCCcCCCCCCCCCceEEEeecCCCCccceEEEEeCCCCCCCC-CceE
Q psy15677 1 ANFIAQTGDPT-GVGTGGSSVFGLAYGDHARYYEAETQPKIPHSKPGLVSMVHCGEGLLGSQFFITLGPDLKSLN-EHCV 78 (96)
Q Consensus 1 ~~f~iQgGD~~-~~g~gg~~~~~~~~~~~~~~~~~e~~~~l~h~~~G~lsma~~~~~~~~sqFfI~~~~~~~~ld-~~~v 78 (96)
++|||||||+. ++|+|-.|||+ ..|+||++ .|+|+.||+|||||+++++||+|||||..+ +.||| +|+|
T Consensus 70 kdFMiQgGDFv~gDGtG~~sIy~-------~~F~DENF-tlkH~~PGlLSMANsG~~tNGCQFFITcak-cdfLD~KHVV 140 (177)
T KOG0879|consen 70 KDFMIQGGDFVNGDGTGVASIYG-------STFPDENF-TLKHDGPGLLSMANSGKDTNGCQFFITCAK-CDFLDGKHVV 140 (177)
T ss_pred hhheeccCceecCCCceEEEEcC-------CCCCCcce-eeecCCCceeeccccCCCCCCceEEEEecc-cccccCceEE
Confidence 58999999987 99999999999 57999986 999999999999999999999999999985 89999 9999
Q ss_pred EEEEEcCHHHHHHHHhh
Q psy15677 79 FGEIAEGFDILLKLNNA 95 (96)
Q Consensus 79 FG~Vi~G~dvl~~I~~~ 95 (96)
||||++|+.++++||.+
T Consensus 141 FGrvldGlli~rkIEnv 157 (177)
T KOG0879|consen 141 FGRVLDGLLIMRKIENV 157 (177)
T ss_pred EeeeehhhhhhhhhhcC
Confidence 99999999999999975
>cd01927 cyclophilin_WD40 cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain
Back Show alignment and domain information
Probab=100.00 E-value=7e-33 Score=183.95 Aligned_cols=87 Identities=43% Similarity=0.783 Sum_probs=81.3
Q ss_pred CCeEEEeCCCCCCCCCCCccccCccCCCCCcCCCCcCCCCCCCCCceEEEeecCCCCccceEEEEeCCCCCCCC-CceEE
Q psy15677 1 ANFIAQTGDPTGVGTGGSSVFGLAYGDHARYYEAETQPKIPHSKPGLVSMVHCGEGLLGSQFFITLGPDLKSLN-EHCVF 79 (96)
Q Consensus 1 ~~f~iQgGD~~~~g~gg~~~~~~~~~~~~~~~~~e~~~~l~h~~~G~lsma~~~~~~~~sqFfI~~~~~~~~ld-~~~vF 79 (96)
|+||||+||+.++|.++.++|+ ..|++|..+.++|.++|+||||++++++++|||||++.+ .|+|| +|+||
T Consensus 44 ~~f~iq~Gd~~~~g~g~~~~~~-------~~~~~e~~~~~~h~~~G~l~ma~~~~~s~~SqFfIt~~~-~p~Ldg~~tvF 115 (148)
T cd01927 44 KGFMIQTGDPTGDGTGGESIWG-------KEFEDEFSPSLKHDRPYTLSMANAGPNTNGSQFFITTVA-TPWLDNKHTVF 115 (148)
T ss_pred CCcEEEecccCCCCCCCCcccC-------CccccccccccCcCCCeEEEEeeCCCCCCCceEEEEcCC-CcccCCCceEE
Confidence 7899999999999999999998 568899877899999999999999999999999999986 89999 99999
Q ss_pred EEEEcCHHHHHHHHhh
Q psy15677 80 GEIAEGFDILLKLNNA 95 (96)
Q Consensus 80 G~Vi~G~dvl~~I~~~ 95 (96)
|||++|||||++|+++
T Consensus 116 G~V~~G~dvl~~I~~~ 131 (148)
T cd01927 116 GRVVKGMDVVQRIENV 131 (148)
T ss_pred EEEEcCHHHHHHHHcC
Confidence 9999999999999875
This group consists of several hypothetical and putative eukaryotic and bacterial proteins which have a cyclophilin domain and a WD40 domain. Function of the protein is not known.
>cd01922 cyclophilin_SpCYP2_like cyclophilin_SpCYP2_like: cyclophilin 2-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to Schizosaccharomyces pombe cyp-2
Back Show alignment and domain information
Probab=100.00 E-value=1.3e-32 Score=182.33 Aligned_cols=87 Identities=39% Similarity=0.838 Sum_probs=80.8
Q ss_pred CCeEEEeCCCCCCCCCCCccccCccCCCCCcCCCCcCCCCCCCCCceEEEeecCCCCccceEEEEeCCCCCCCC-CceEE
Q psy15677 1 ANFIAQTGDPTGVGTGGSSVFGLAYGDHARYYEAETQPKIPHSKPGLVSMVHCGEGLLGSQFFITLGPDLKSLN-EHCVF 79 (96)
Q Consensus 1 ~~f~iQgGD~~~~g~gg~~~~~~~~~~~~~~~~~e~~~~l~h~~~G~lsma~~~~~~~~sqFfI~~~~~~~~ld-~~~vF 79 (96)
|+|||||||++++|.++.++|+ ..|++|..+.++|.++|+||||+++|++++|||||++.+ .|+|| +|+||
T Consensus 44 ~~f~iq~Gd~~~~g~~~~~~~~-------~~~~~e~~~~~~h~~~G~l~ma~~~~~s~~sqFfIt~~~-~p~Ld~~~tvF 115 (146)
T cd01922 44 KDFMIQGGDPTGTGRGGASIYG-------KKFEDEIHPELKHTGAGILSMANAGPNTNGSQFFITLAP-TPWLDGKHTIF 115 (146)
T ss_pred CCcEEEecccCCCCCCcccccC-------CCcccccccCcCCCCCeEEEEeeCCCCCCccEEEEEcCC-CcccCCCCCEE
Confidence 6899999999998999999998 568888767899999999999999999999999999996 89999 99999
Q ss_pred EEEEcCHHHHHHHHhh
Q psy15677 80 GEIAEGFDILLKLNNA 95 (96)
Q Consensus 80 G~Vi~G~dvl~~I~~~ 95 (96)
|||++|||||++|+++
T Consensus 116 G~V~~G~dvl~~I~~~ 131 (146)
T cd01922 116 GRVSKGMKVIENMVEV 131 (146)
T ss_pred EEEEcCHHHHHHHHhC
Confidence 9999999999999975
These proteins bind their respective SNW chromatin binding protein in autologous systems, in a CsA independent manner indicating interaction with a surface outside the PPIase active site. SNW proteins play a basic and broad range role in signaling.
>cd01921 cyclophilin_RRM cyclophilin_RRM: cyclophilin-type peptidylprolyl cis- trans isomerase domain occuring with a C-terminal RNA recognition motif domain (RRM)
Back Show alignment and domain information
Probab=100.00 E-value=2.3e-32 Score=184.38 Aligned_cols=95 Identities=56% Similarity=0.998 Sum_probs=84.4
Q ss_pred CCeEEEeCCCCCCCCCCCccccCccCCCCCcCCCCcCCCCCCCCCceEEEeecCCCCccceEEEEeCCCCCCCC-CceEE
Q psy15677 1 ANFIAQTGDPTGVGTGGSSVFGLAYGDHARYYEAETQPKIPHSKPGLVSMVHCGEGLLGSQFFITLGPDLKSLN-EHCVF 79 (96)
Q Consensus 1 ~~f~iQgGD~~~~g~gg~~~~~~~~~~~~~~~~~e~~~~l~h~~~G~lsma~~~~~~~~sqFfI~~~~~~~~ld-~~~vF 79 (96)
|+|||||||+.++++++.++|+.......+.+++|..+.++|+++|+||||++++++++|||||++.+..|+|| +|+||
T Consensus 44 ~~f~iQgGd~~~~g~~~~~~~~~~~~~~~~~~~~e~~~~~~h~~~G~l~ma~~~~~~~~SQFfIt~~~~~~~Ldg~~tvF 123 (166)
T cd01921 44 KDFIAQTGDPTGTGAGGESIYSQLYGRQARFFEPEILPLLKHSKKGTVSMVNAGDNLNGSQFYITLGENLDYLDGKHTVF 123 (166)
T ss_pred CCceEEECCcCCCCCCCcccccccccccCcccCcccCCccccCCceEEEEeECCCCCccceEEEEcCCCCcccCCCccEE
Confidence 68999999999999999888875544444568888877899999999999999999999999999975579999 99999
Q ss_pred EEEEcCHHHHHHHHhh
Q psy15677 80 GEIAEGFDILLKLNNA 95 (96)
Q Consensus 80 G~Vi~G~dvl~~I~~~ 95 (96)
|||++|||||++|+++
T Consensus 124 G~Vi~G~dvv~~I~~~ 139 (166)
T cd01921 124 GQVVEGFDVLEKINDA 139 (166)
T ss_pred EEEEcCHHHHHHHHcC
Confidence 9999999999999875
This subfamily of the cyclophilin domain family contains a number of eukaryotic cyclophilins having the RRM domain including the nuclear proteins: human hCyP-57, Arabidopsis thaliana AtCYP59, Caenorhabditis elegans CeCyP-44 and Paramecium tetrurelia Kin241. The Kin241 protein has been shown to have a role in cell morphogenesis.
>KOG0111|consensus
Back Show alignment and domain information
Probab=100.00 E-value=2.7e-33 Score=195.30 Aligned_cols=85 Identities=38% Similarity=0.736 Sum_probs=80.9
Q ss_pred CCeEEEeCCCC-CCCCCCCccccCccCCCCCcCCCCcCCCCCCCCCceEEEeecCCCCccceEEEEeCCCCCCCC-CceE
Q psy15677 1 ANFIAQTGDPT-GVGTGGSSVFGLAYGDHARYYEAETQPKIPHSKPGLVSMVHCGEGLLGSQFFITLGPDLKSLN-EHCV 78 (96)
Q Consensus 1 ~~f~iQgGD~~-~~g~gg~~~~~~~~~~~~~~~~~e~~~~l~h~~~G~lsma~~~~~~~~sqFfI~~~~~~~~ld-~~~v 78 (96)
|.|||||||++ ++|+||.|||| ..|.||++ .|+|+.+|+|||||+++|+|||||||++.. ..||| +|+|
T Consensus 191 p~fmcqggdftn~ngtggksiyg-------kkfddenf-~lkht~pgtlsmansgantngsqffict~k-tdwldgkhvv 261 (298)
T KOG0111|consen 191 PKFMCQGGDFTNGNGTGGKSIYG-------KKFDDENF-TLKHTMPGTLSMANSGANTNGSQFFICTEK-TDWLDGKHVV 261 (298)
T ss_pred hhhhccCCccccCCCCCCccccc-------ccccccce-eeecCCCceeeccccCCCCCCceEEEEecc-cccccCceeE
Confidence 67999999999 89999999999 67999986 999999999999999999999999999984 89999 9999
Q ss_pred EEEEEcCHHHHHHHHh
Q psy15677 79 FGEIAEGFDILLKLNN 94 (96)
Q Consensus 79 FG~Vi~G~dvl~~I~~ 94 (96)
||.|++||+||++|++
T Consensus 262 fghv~eg~~vvrq~e~ 277 (298)
T KOG0111|consen 262 FGHVVEGMNVVRQVEQ 277 (298)
T ss_pred EeeecchHHHHHHHHh
Confidence 9999999999999986
>cd01928 Cyclophilin_PPIL3_like Cyclophilin_PPIL3_like
Back Show alignment and domain information
Probab=99.98 E-value=3e-32 Score=181.80 Aligned_cols=87 Identities=41% Similarity=0.749 Sum_probs=80.9
Q ss_pred CCeEEEeCCCCCCCCCCCccccCccCCCCCcCCCCcCCCCCCCCCceEEEeecCCCCccceEEEEeCCCCCCCC-CceEE
Q psy15677 1 ANFIAQTGDPTGVGTGGSSVFGLAYGDHARYYEAETQPKIPHSKPGLVSMVHCGEGLLGSQFFITLGPDLKSLN-EHCVF 79 (96)
Q Consensus 1 ~~f~iQgGD~~~~g~gg~~~~~~~~~~~~~~~~~e~~~~l~h~~~G~lsma~~~~~~~~sqFfI~~~~~~~~ld-~~~vF 79 (96)
|+||||+||+.++|+++.++|+ ..|++|..+.++|+++|+||||++++++++|||||++.+ .|+|| +|+||
T Consensus 47 ~~f~iq~Gd~~~~g~g~~~~~~-------~~~~~e~~~~~~~~~~G~v~ma~~~~~~~~SqFfI~~~~-~~~Ld~~~tvF 118 (153)
T cd01928 47 KGFMVQTGDPTGTGKGGESIWG-------KKFEDEFRETLKHDSRGVVSMANNGPNTNGSQFFITYAK-QPHLDGKYTVF 118 (153)
T ss_pred CCCEEEccccCCCCCCCCccCC-------CccccccccCCCcCCCcEEEEeeCCCCCcccEEEEEeCC-CcccCCCceEE
Confidence 6899999999999999999888 568899877889988999999999999999999999986 79999 99999
Q ss_pred EEEEcCHHHHHHHHhh
Q psy15677 80 GEIAEGFDILLKLNNA 95 (96)
Q Consensus 80 G~Vi~G~dvl~~I~~~ 95 (96)
|||++|||||++|+++
T Consensus 119 G~V~~G~dvl~~I~~~ 134 (153)
T cd01928 119 GKVIDGFETLDTLEKL 134 (153)
T ss_pred EEEEeCHHHHHHHHcC
Confidence 9999999999999975
Proteins similar to Human cyclophilin-like peptidylprolyl cis- trans isomerase (PPIL3). Members of this family lack a key residue important for cyclosporin binding: the tryptophan residue corresponding to W121 in human hCyP-18a; most members have a histidine at this position. The exact function of the protein is not known.
>cd01923 cyclophilin_RING cyclophilin_RING: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a modified RING finger domain
Back Show alignment and domain information
Probab=99.98 E-value=6.5e-32 Score=181.11 Aligned_cols=87 Identities=41% Similarity=0.791 Sum_probs=81.1
Q ss_pred CCeEEEeCCCCCCCCCCCccccCccCCCCCcCCCCcCCCCCCCCCceEEEeecCCCCccceEEEEeCCCCCCCC-CceEE
Q psy15677 1 ANFIAQTGDPTGVGTGGSSVFGLAYGDHARYYEAETQPKIPHSKPGLVSMVHCGEGLLGSQFFITLGPDLKSLN-EHCVF 79 (96)
Q Consensus 1 ~~f~iQgGD~~~~g~gg~~~~~~~~~~~~~~~~~e~~~~l~h~~~G~lsma~~~~~~~~sqFfI~~~~~~~~ld-~~~vF 79 (96)
|+||||+||++++|+++.++|+ ..+++|..+.++|+++|+||||++++++++|||||++.+ .|+|| +|+||
T Consensus 46 ~~~~iq~Gd~~~~g~~~~~~~g-------~~~~~E~~~~~~h~~~G~v~ma~~~~~s~~sqFfIt~~~-~~~Ld~~~~vF 117 (159)
T cd01923 46 RNFMIQGGDPTGTGRGGESIWG-------KPFKDEFKPNLSHDGRGVLSMANSGPNTNGSQFFITYRS-CKHLDGKHTVF 117 (159)
T ss_pred CCcEEEecccCCCCCCCccccC-------CccCcccccCcCcCCCcEEEEeeCCCCCcccEEEEECCC-CcccCCCccEE
Confidence 6899999999999999999998 568888777889999999999999999999999999996 89999 99999
Q ss_pred EEEEcCHHHHHHHHhh
Q psy15677 80 GEIAEGFDILLKLNNA 95 (96)
Q Consensus 80 G~Vi~G~dvl~~I~~~ 95 (96)
|||++|||+|++|+++
T Consensus 118 G~V~~G~~vl~~I~~~ 133 (159)
T cd01923 118 GRVVGGLETLEAMENV 133 (159)
T ss_pred EEEEcCHHHHHHHHcC
Confidence 9999999999999975
This group includes the nuclear proteins, Human hCyP-60 and Caenorhabditis elegans MOG-6 which, compared to the archetypal cyclophilin Human cyclophilin A exhibit reduced peptidylprolyl cis- trans isomerase activity and lack a residue important for cyclophilin binding. Human hCyP-60 has been shown to physically interact with the proteinase inhibitor peptide eglin c and; C. elegans MOG-6 to physically interact with MEP-1, a nuclear zinc finger protein. MOG-6 has been shown to function in germline sex determination.
>KOG0415|consensus
Back Show alignment and domain information
Probab=99.97 E-value=3.9e-31 Score=194.09 Aligned_cols=96 Identities=61% Similarity=1.041 Sum_probs=92.8
Q ss_pred CCeEEEeCCCCCCCCCCCccccCccCCCCCcCCCCcCCCCCCCCCceEEEeecCCCCccceEEEEeCCCCCCCC-CceEE
Q psy15677 1 ANFIAQTGDPTGVGTGGSSVFGLAYGDHARYYEAETQPKIPHSKPGLVSMVHCGEGLLGSQFFITLGPDLKSLN-EHCVF 79 (96)
Q Consensus 1 ~~f~iQgGD~~~~g~gg~~~~~~~~~~~~~~~~~e~~~~l~h~~~G~lsma~~~~~~~~sqFfI~~~~~~~~ld-~~~vF 79 (96)
.+|++|+|||+|+|.||.|||+..+++..++|++|+.|.++|.+.|+|||++.+.|.+||||||||++++.+|| +|+||
T Consensus 47 ~~f~aQTGDPtGtG~GG~si~~~lyG~q~rffeaE~~p~l~Hsk~G~vsmvs~g~n~~gSQF~iTlgenLdyLDg~htvf 126 (479)
T KOG0415|consen 47 RDFTAQTGDPTGTGDGGESIYGVLYGEQARFFEAEFLPKLKHSKMGTVSMVSAGENLNGSQFFITLGENLDYLDGKHTVF 126 (479)
T ss_pred ccceeecCCCCCCCCCcceeeeecccccchhhhhhhcccccccccceEEeecCCcccccceEEEEcccccccccccccee
Confidence 37999999999999999999999999999999999999999999999999999999999999999999999999 99999
Q ss_pred EEEEcCHHHHHHHHhhC
Q psy15677 80 GEIAEGFDILLKLNNAI 96 (96)
Q Consensus 80 G~Vi~G~dvl~~I~~~~ 96 (96)
|+|.||+|+|.+|+.+|
T Consensus 127 GqV~EG~dtl~kiNea~ 143 (479)
T KOG0415|consen 127 GQVAEGFDTLTKINEAI 143 (479)
T ss_pred eehhhhHHHHHHHHHHh
Confidence 99999999999999875
>cd01926 cyclophilin_ABH_like cyclophilin_ABH_like: Cyclophilin A, B and H-like cyclophilin-type peptidylprolyl cis- trans isomerase (PPIase) domain
Back Show alignment and domain information
Probab=99.97 E-value=2.3e-30 Score=174.20 Aligned_cols=86 Identities=44% Similarity=0.773 Sum_probs=78.2
Q ss_pred CCeEEEeCCCC-CCCCCCCccccCccCCCCCcCCCCcCCCCCCCCCceEEEeecCCCCccceEEEEeCCCCCCCC-CceE
Q psy15677 1 ANFIAQTGDPT-GVGTGGSSVFGLAYGDHARYYEAETQPKIPHSKPGLVSMVHCGEGLLGSQFFITLGPDLKSLN-EHCV 78 (96)
Q Consensus 1 ~~f~iQgGD~~-~~g~gg~~~~~~~~~~~~~~~~~e~~~~l~h~~~G~lsma~~~~~~~~sqFfI~~~~~~~~ld-~~~v 78 (96)
|+||||+||+. ++|+++.++|+ ..+++|+. .++|+++|+||||+.++++++|||||++.+ .|+|| +|+|
T Consensus 60 ~~~~iq~Gd~~~~~g~~~~~~~g-------~~~~~e~~-~~~h~~~G~lsma~~~~~~~~sqFfIt~~~-~~~Ld~~~tv 130 (164)
T cd01926 60 PDFMIQGGDFTRGNGTGGKSIYG-------EKFPDENF-KLKHTGPGLLSMANAGPNTNGSQFFITTVK-TPWLDGKHVV 130 (164)
T ss_pred CCcEEEcCCccCCCCCCCCcccC-------CccCCCCc-cccCCCccEEEeeECCCCCcccEEEEEeCC-CCccCCcccE
Confidence 68999999986 78888889998 45788864 789988999999999999999999999996 89999 9999
Q ss_pred EEEEEcCHHHHHHHHhh
Q psy15677 79 FGEIAEGFDILLKLNNA 95 (96)
Q Consensus 79 FG~Vi~G~dvl~~I~~~ 95 (96)
||||++|||||++|+++
T Consensus 131 FG~V~~G~dvl~~i~~~ 147 (164)
T cd01926 131 FGKVVEGMDVVKKIENV 147 (164)
T ss_pred EEEEEEcHHHHHHHHcC
Confidence 99999999999999875
This family represents the archetypal cystolic cyclophilin similar to human cyclophilins A, B and H. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. These enzymes have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. As cyclophilins, Human hCyP-A, human cyclophilin-B (hCyP-19), S. cerevisiae Cpr1 and C. elegans Cyp-3, are inhibited by the immunosuppressive drug cyclopsporin A (CsA). CsA binds to the PPIase active site. Cyp-3. S. cerevisiae Cpr1 interacts with the Rpd3 - Sin3 complex and in addition is a component of the Set3 complex. S. cerevisiae Cpr1 has also been shown to have a role in Zpr1p nuclear transport. Human cyclophilin H associates with the [U4/U6.U5] tri-snRNP particles of the spl
>PLN03149 peptidyl-prolyl isomerase H (cyclophilin H); Provisional
Back Show alignment and domain information
Probab=99.97 E-value=3.8e-30 Score=176.49 Aligned_cols=86 Identities=38% Similarity=0.658 Sum_probs=78.0
Q ss_pred CCeEEEeCCCC-CCCCCCCccccCccCCCCCcCCCCcCCCCCCCCCceEEEeecCCCCccceEEEEeCCCCCCCC-CceE
Q psy15677 1 ANFIAQTGDPT-GVGTGGSSVFGLAYGDHARYYEAETQPKIPHSKPGLVSMVHCGEGLLGSQFFITLGPDLKSLN-EHCV 78 (96)
Q Consensus 1 ~~f~iQgGD~~-~~g~gg~~~~~~~~~~~~~~~~~e~~~~l~h~~~G~lsma~~~~~~~~sqFfI~~~~~~~~ld-~~~v 78 (96)
|+|||||||+. ++|+|+.++|+ ..|++|+. .++|+++|+||||++++++++||||||+.+ .|+|| +|+|
T Consensus 78 ~~f~iqgGd~~~~~g~g~~~~~g-------~~f~~e~~-~~~h~~~G~lsma~~g~~s~~sqFfIt~~~-~p~Ldg~~tV 148 (186)
T PLN03149 78 KDFMIQGGDFLKGDGTGCVSIYG-------SKFEDENF-IAKHTGPGLLSMANSGPNTNGCQFFITCAK-CDWLDNKHVV 148 (186)
T ss_pred CCcEEEcCCcccCCCCCcccccC-------CccCCccc-ccccCCCCEEEEeeCCCCCcccEEEEECCC-CCccCCCceE
Confidence 68999999985 88999999998 45777864 678999999999999999999999999986 89999 9999
Q ss_pred EEEEE-cCHHHHHHHHhh
Q psy15677 79 FGEIA-EGFDILLKLNNA 95 (96)
Q Consensus 79 FG~Vi-~G~dvl~~I~~~ 95 (96)
||||+ +|||||++|+++
T Consensus 149 FG~Vi~eG~dvl~~I~~~ 166 (186)
T PLN03149 149 FGRVLGDGLLVVRKIENV 166 (186)
T ss_pred EEEEEECcHHHHHHHHcC
Confidence 99999 799999999975
>PTZ00060 cyclophilin; Provisional
Back Show alignment and domain information
Probab=99.96 E-value=9.5e-30 Score=174.07 Aligned_cols=86 Identities=42% Similarity=0.764 Sum_probs=78.0
Q ss_pred CCeEEEeCCCC-CCCCCCCccccCccCCCCCcCCCCcCCCCCCCCCceEEEeecCCCCccceEEEEeCCCCCCCC-CceE
Q psy15677 1 ANFIAQTGDPT-GVGTGGSSVFGLAYGDHARYYEAETQPKIPHSKPGLVSMVHCGEGLLGSQFFITLGPDLKSLN-EHCV 78 (96)
Q Consensus 1 ~~f~iQgGD~~-~~g~gg~~~~~~~~~~~~~~~~~e~~~~l~h~~~G~lsma~~~~~~~~sqFfI~~~~~~~~ld-~~~v 78 (96)
|+|+||+||+. ++|+++.++|+ ..+++|.. .++|.++|+||||++++++++|||||++.+ .|+|| +|+|
T Consensus 76 ~~~~iqgGd~~~~~g~~g~~~~g-------~~~~~e~~-~~~h~~~G~lsma~~g~~~~~sqFfIt~~~-~~~Ldg~~tv 146 (183)
T PTZ00060 76 PQFMCQGGDITNHNGTGGESIYG-------RKFTDENF-KLKHDQPGLLSMANAGPNTNGSQFFITTVP-CPWLDGKHVV 146 (183)
T ss_pred CCCeEEeCCccCCCCCCCCcccc-------cccCCccc-cccCCCCCEEEeccCCCCCCcceEEEEeCC-CcccCCCccE
Confidence 78999999987 67888989998 45777854 788998999999999999999999999986 89999 9999
Q ss_pred EEEEEcCHHHHHHHHhh
Q psy15677 79 FGEIAEGFDILLKLNNA 95 (96)
Q Consensus 79 FG~Vi~G~dvl~~I~~~ 95 (96)
||||++|||||++|+++
T Consensus 147 FG~Vi~G~dvl~~I~~~ 163 (183)
T PTZ00060 147 FGKVIEGMEVVRAMEKE 163 (183)
T ss_pred EEEEEccHHHHHHHHcc
Confidence 99999999999999874
>PTZ00221 cyclophilin; Provisional
Back Show alignment and domain information
Probab=99.96 E-value=3.1e-29 Score=178.18 Aligned_cols=82 Identities=33% Similarity=0.462 Sum_probs=73.1
Q ss_pred CeEEEeCCCCCCCCCCCccccCccCCCCCcCCCCcCCCCCCCCCceEEEeecCCCCccceEEEEeCCCCCCCC-CceEEE
Q psy15677 2 NFIAQTGDPTGVGTGGSSVFGLAYGDHARYYEAETQPKIPHSKPGLVSMVHCGEGLLGSQFFITLGPDLKSLN-EHCVFG 80 (96)
Q Consensus 2 ~f~iQgGD~~~~g~gg~~~~~~~~~~~~~~~~~e~~~~l~h~~~G~lsma~~~~~~~~sqFfI~~~~~~~~ld-~~~vFG 80 (96)
+||||+||+++. +.++|| ..|++|+. .++|+++|+||||+++|++++||||||+.+ .|+|| +|+|||
T Consensus 117 ~f~iqgGD~~~~---g~s~~G-------~~f~dE~~-~~~h~~~G~LsMan~GpntngSQFfITl~~-~p~LDgk~vVFG 184 (249)
T PTZ00221 117 NNIIVLGELDSF---NVSSTG-------TPIADEGY-RHRHTERGLLTMISEGPHTSGSVFGITLGP-SPSLDFKQVVFG 184 (249)
T ss_pred CCEEEeCCCCCC---CccCCC-------CcccCccc-cccCCCCCEEEeCcCCCCCccceEEEECCC-CCccCCCceEEE
Confidence 489999998743 346677 56899975 789999999999999999999999999996 89999 999999
Q ss_pred EEEcCHHHHHHHHhh
Q psy15677 81 EIAEGFDILLKLNNA 95 (96)
Q Consensus 81 ~Vi~G~dvl~~I~~~ 95 (96)
||++|||||++|+++
T Consensus 185 rVveGmdVv~kIe~v 199 (249)
T PTZ00221 185 KAVDDLSLLEKLESL 199 (249)
T ss_pred EEEeCHHHHHHHHcC
Confidence 999999999999975
>cd01925 cyclophilin_CeCYP16-like cyclophilin_CeCYP16-like: cyclophilin-type peptidylprolyl cis- trans isomerase) (PPIase) domain similar to Caenorhabditis elegans cyclophilin 16
Back Show alignment and domain information
Probab=99.96 E-value=1e-28 Score=167.31 Aligned_cols=87 Identities=41% Similarity=0.745 Sum_probs=79.2
Q ss_pred CCeEEEeCCCCCCCCCCCccccCccCCCCCcCCCCcCCCCCCCCCceEEEeecCCCCccceEEEEeCCCCCCCC-CceEE
Q psy15677 1 ANFIAQTGDPTGVGTGGSSVFGLAYGDHARYYEAETQPKIPHSKPGLVSMVHCGEGLLGSQFFITLGPDLKSLN-EHCVF 79 (96)
Q Consensus 1 ~~f~iQgGD~~~~g~gg~~~~~~~~~~~~~~~~~e~~~~l~h~~~G~lsma~~~~~~~~sqFfI~~~~~~~~ld-~~~vF 79 (96)
|+|||||||+.++|+++.++|+ ..|++|..+.++|+++|+||||++++++++|||||++.+ .|+|| +|+||
T Consensus 52 ~~f~iQgGd~~~~g~g~~s~~g-------~~~~~E~~~~~~~~~~G~l~ma~~g~~s~~sqFfIt~~~-~~~ldg~~tvF 123 (171)
T cd01925 52 PGFIIQGGDPTGTGTGGESIYG-------EPFKDEFHSRLRFNRRGLVGMANAGDDSNGSQFFFTLDK-ADELNNKHTLF 123 (171)
T ss_pred CCcEEEccccCCCCccCcccCC-------CccCcccccCcCCCCCcEEEECcCCCCCcccEEEEEcCC-CcccCCCceEE
Confidence 7899999999999999999998 568888777888999999999999999999999999986 89999 99999
Q ss_pred EEEEc-CHHHHHHHHhh
Q psy15677 80 GEIAE-GFDILLKLNNA 95 (96)
Q Consensus 80 G~Vi~-G~dvl~~I~~~ 95 (96)
|||++ ++++|++|+++
T Consensus 124 G~V~g~~~~~v~~i~~~ 140 (171)
T cd01925 124 GKVTGDTIYNLLKLAEV 140 (171)
T ss_pred EEEEECcHHHHHHHhcC
Confidence 99994 68889999875
C. elegans CeCYP-16, compared to the archetypal cyclophilin Human cyclophilin A has, a reduced peptidylprolyl cis- trans isomerase activity, is cyclosporin insensitive and shows an altered substrate preference favoring, hydrophobic, acidic or amide amino acids. Most members of this subfamily have a glutamate residue in the active site at the position equivalent to a tryptophan (W121 in Human cyclophilin A), which has been shown to be important for cyclophilin binding.
>KOG0865|consensus
Back Show alignment and domain information
Probab=99.96 E-value=1.9e-29 Score=170.22 Aligned_cols=85 Identities=39% Similarity=0.717 Sum_probs=79.9
Q ss_pred CCeEEEeCCCC-CCCCCCCccccCccCCCCCcCCCCcCCCCCCCCCceEEEeecCCCCccceEEEEeCCCCCCCC-CceE
Q psy15677 1 ANFIAQTGDPT-GVGTGGSSVFGLAYGDHARYYEAETQPKIPHSKPGLVSMVHCGEGLLGSQFFITLGPDLKSLN-EHCV 78 (96)
Q Consensus 1 ~~f~iQgGD~~-~~g~gg~~~~~~~~~~~~~~~~~e~~~~l~h~~~G~lsma~~~~~~~~sqFfI~~~~~~~~ld-~~~v 78 (96)
++||+||||++ ++|+|+.|+|+ +.|+||+. .|+|..+|+|||||.+||+|+|||||++.. ..||| +|+|
T Consensus 61 ~~fm~qggDft~hngtggkSiy~-------ekF~DenF-ilkhtgpGiLSmaNagpntngsqffictak-tewLdgkhVV 131 (167)
T KOG0865|consen 61 PGFMCQGGDFTCHNGTGGKSIYG-------EKFDDENF-ILKHTGPGILSMANAGPNTNGSQFFICTAK-TEWLDGKHVV 131 (167)
T ss_pred cceeeccCcccccCCccceEecc-------cccCCcCc-EEecCCCCeeehhhcCCCccccEEEEEccc-cccccCceeE
Confidence 47999999999 89999999998 46899986 999999999999999999999999999995 79999 9999
Q ss_pred EEEEEcCHHHHHHHHh
Q psy15677 79 FGEIAEGFDILLKLNN 94 (96)
Q Consensus 79 FG~Vi~G~dvl~~I~~ 94 (96)
||+|.+||+++++|+.
T Consensus 132 fGkv~eGm~iv~a~e~ 147 (167)
T KOG0865|consen 132 FGKVKEGMDIVEAMER 147 (167)
T ss_pred cCceEcccchhhhhhc
Confidence 9999999999999985
>cd01924 cyclophilin_TLP40_like cyclophilin_TLP40_like: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) similar ot the Spinach thylakoid lumen protein TLP40
Back Show alignment and domain information
Probab=99.95 E-value=9.6e-28 Score=163.38 Aligned_cols=91 Identities=32% Similarity=0.518 Sum_probs=68.1
Q ss_pred CCeEEEeCCCCCCCCCC---------------------CccccCccCCCCCcCCCCcCCCCCCCCCceEEEeecC--CCC
Q psy15677 1 ANFIAQTGDPTGVGTGG---------------------SSVFGLAYGDHARYYEAETQPKIPHSKPGLVSMVHCG--EGL 57 (96)
Q Consensus 1 ~~f~iQgGD~~~~g~gg---------------------~~~~~~~~~~~~~~~~~e~~~~l~h~~~G~lsma~~~--~~~ 57 (96)
|+|||||||+++++.+. .++|+..... ....+++ +.+.|+.+|+||||+++ |++
T Consensus 44 ~~fviQgGdp~~~~~~~~~~~~~~~~~~p~e~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~G~laMa~~~~~~ns 120 (176)
T cd01924 44 GGFVVQTGDPQGKNPGFPDPETGKSRTIPLEIKPEGQKQPVYGKTLEE--AGRYDEQ-PVLPFNAFGAIAMARTEFDPNS 120 (176)
T ss_pred CCcEEEecCCCCCCCCcccccccccccccceecccCCCCCccCccccc--ccccccc-cccccCCCCeEEEccCCCCCCC
Confidence 68999999998654332 2344421000 0012333 35566679999999988 699
Q ss_pred ccceEEEEeCC------CCCCCC-CceEEEEEEcCHHHHHHHHh
Q psy15677 58 LGSQFFITLGP------DLKSLN-EHCVFGEIAEGFDILLKLNN 94 (96)
Q Consensus 58 ~~sqFfI~~~~------~~~~ld-~~~vFG~Vi~G~dvl~~I~~ 94 (96)
++|||||++.+ ..|+|| +|+|||||++|||||++|++
T Consensus 121 ~~SQFfI~~~~~~~~~~~~~~Ldg~ytVFG~VveG~dvl~~I~~ 164 (176)
T cd01924 121 ASSQFFFLLKDNELTPSRNNVLDGRYAVFGYVTDGLDILRELKV 164 (176)
T ss_pred ccceEEEEeccccccCCCCCccCCCceEEEEEecCHHHHHhhcC
Confidence 99999999983 489999 99999999999999999975
Compared to the archetypal cyclophilin Human cyclophilin A, these proteins have similar peptidylprolyl cis- trans isomerase activity and reduced affinity for cyclosporin A. Spinach TLP40 has been shown to have a dual function as a folding catalyst and regulator of dephosphorylation.
>cd01920 cyclophilin_EcCYP_like cyclophilin_EcCYP_like: cyclophilin-type A-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to the cytosolic E
Back Show alignment and domain information
Probab=99.94 E-value=7e-27 Score=156.16 Aligned_cols=84 Identities=27% Similarity=0.355 Sum_probs=67.4
Q ss_pred CCeEEEeCCCCCCCCCCCccccCccCCCCCcCCCCcCCCCCCCCCceEEEeecC-CCCccceEEEEeCCCCCCCC-----
Q psy15677 1 ANFIAQTGDPTGVGTGGSSVFGLAYGDHARYYEAETQPKIPHSKPGLVSMVHCG-EGLLGSQFFITLGPDLKSLN----- 74 (96)
Q Consensus 1 ~~f~iQgGD~~~~g~gg~~~~~~~~~~~~~~~~~e~~~~l~h~~~G~lsma~~~-~~~~~sqFfI~~~~~~~~ld----- 74 (96)
|+||||+||+...+.+ ..++ ..+++|....++ +++|+||||+++ |++++|||||++.+ .++||
T Consensus 44 ~~f~iQ~Gd~~~~~~~--~~~~-------~~~~~e~~~~~~-~~~G~v~ma~~~~~~s~~SqFfI~~~~-~~~ld~~~~~ 112 (155)
T cd01920 44 SGFVIQGGGFTPDLAQ--KETL-------KPIKNEAGNGLS-NTRGTIAMARTNAPDSATSQFFINLKD-NASLDYQNEQ 112 (155)
T ss_pred CCcEEEeCCCCCCCCc--cccC-------CcccCccccccc-CCceEEEECCCCCCCCccceEEEECCC-chhcCCcccC
Confidence 7899999999854333 2223 346777554444 569999999976 99999999999996 78998
Q ss_pred -CceEEEEEEcCHHHHHHHHhh
Q psy15677 75 -EHCVFGEIAEGFDILLKLNNA 95 (96)
Q Consensus 75 -~~~vFG~Vi~G~dvl~~I~~~ 95 (96)
+|+|||+|++|||||++|+++
T Consensus 113 ~~ytvFG~V~eG~dvl~~I~~~ 134 (155)
T cd01920 113 WGYTVFGEVTEGMDVVDKIAGV 134 (155)
T ss_pred CCccEEEEEecCHHHHHHHHcC
Confidence 389999999999999999976
coli cyclophilin A and Streptomyces antibioticus SanCyp18. Compared to the archetypal cyclophilin Human cyclophilin A, these have reduced affinity for cyclosporin A. E. coli cyclophilin A has a similar peptidylprolyl cis- trans isomerase activity to the human cyclophilin A. Most members of this subfamily contain a phenylalanine residue at the position equivalent to Human cyclophilin W121, where a tyrptophan has been shown to be important for cyclophilin binding.
>PRK10791 peptidyl-prolyl cis-trans isomerase B (rotamase B); Provisional
Back Show alignment and domain information
Probab=99.94 E-value=1.3e-26 Score=156.20 Aligned_cols=83 Identities=25% Similarity=0.399 Sum_probs=65.9
Q ss_pred CCeEEEeCCCC-CCCCCCCccccCccCCCCCcCCCCcCCCCCCCCCceEEEeecC-CCCccceEEEEeCCCCCCCC----
Q psy15677 1 ANFIAQTGDPT-GVGTGGSSVFGLAYGDHARYYEAETQPKIPHSKPGLVSMVHCG-EGLLGSQFFITLGPDLKSLN---- 74 (96)
Q Consensus 1 ~~f~iQgGD~~-~~g~gg~~~~~~~~~~~~~~~~~e~~~~l~h~~~G~lsma~~~-~~~~~sqFfI~~~~~~~~ld---- 74 (96)
|+|||||||+. +.+. ..++ ..+++|....++| ++|+||||+.+ |++++|||||++.+ .++||
T Consensus 46 ~~f~iQgGd~~~~~~~---~~~~-------~~~~~e~~~~~~~-~~G~lsma~~~~p~s~~SQFfI~~~~-~~~ld~~~~ 113 (164)
T PRK10791 46 NGFMIQGGGFEPGMKQ---KATK-------EPIKNEANNGLKN-TRGTLAMARTQAPHSATAQFFINVVD-NDFLNFSGE 113 (164)
T ss_pred cCcEEEeCCcCCCCCc---CCCC-------CCcCCcccccccC-CCcEEEECCCCCcCCccceEEEEecC-chhhccccc
Confidence 68999999975 2221 1233 3577776556666 58999999986 99999999999986 56664
Q ss_pred -----CceEEEEEEcCHHHHHHHHhh
Q psy15677 75 -----EHCVFGEIAEGFDILLKLNNA 95 (96)
Q Consensus 75 -----~~~vFG~Vi~G~dvl~~I~~~ 95 (96)
+|+|||||++|||||++|+++
T Consensus 114 ~~d~~~~tvFG~V~eG~dvl~~I~~~ 139 (164)
T PRK10791 114 SLQGWGYCVFAEVVEGMDVVDKIKGV 139 (164)
T ss_pred ccCCCCccEEEEEecCHHHHHHHHcC
Confidence 599999999999999999875
>PRK10903 peptidyl-prolyl cis-trans isomerase A (rotamase A); Provisional
Back Show alignment and domain information
Probab=99.94 E-value=2e-26 Score=158.57 Aligned_cols=84 Identities=23% Similarity=0.324 Sum_probs=67.3
Q ss_pred CCeEEEeCCCCCCCCCCCccccCccCCCCCcCCCCcCCCCCCCCCceEEEeecC-CCCccceEEEEeCCCCCCCC-----
Q psy15677 1 ANFIAQTGDPTGVGTGGSSVFGLAYGDHARYYEAETQPKIPHSKPGLVSMVHCG-EGLLGSQFFITLGPDLKSLN----- 74 (96)
Q Consensus 1 ~~f~iQgGD~~~~g~gg~~~~~~~~~~~~~~~~~e~~~~l~h~~~G~lsma~~~-~~~~~sqFfI~~~~~~~~ld----- 74 (96)
|+|||||||+.+...+ ..++ ..+++|....++| ++|+||||+++ +++++|||||++.+ .++||
T Consensus 75 ~~f~iQgG~~~~~~~~--~~~~-------~~~~~e~~~~l~~-~~G~lama~~~~~~sn~SQFfIt~~~-~~~ld~~~~d 143 (190)
T PRK10903 75 PGFMIQGGGFTEQMQQ--KKPN-------PPIKNEADNGLRN-TRGTIAMARTADKDSATSQFFINVAD-NAFLDHGQRD 143 (190)
T ss_pred CCceEEeCCcCCCCCC--CCCC-------CcccCcccccCcC-CCcEEEeCCCCCCCCcccEEEEECcC-cccccCCccC
Confidence 7999999998754322 2233 3577776555545 59999999976 99999999999996 67776
Q ss_pred -CceEEEEEEcCHHHHHHHHhh
Q psy15677 75 -EHCVFGEIAEGFDILLKLNNA 95 (96)
Q Consensus 75 -~~~vFG~Vi~G~dvl~~I~~~ 95 (96)
+|+|||+|++|||||++|+++
T Consensus 144 g~ytvFG~V~eG~dvl~~I~~~ 165 (190)
T PRK10903 144 FGYAVFGKVVKGMDVADKISQV 165 (190)
T ss_pred CCccEEEEEecCHHHHHHHHcC
Confidence 699999999999999999975
>cd00317 cyclophilin cyclophilin: cyclophilin-type peptidylprolyl cis- trans isomerases
Back Show alignment and domain information
Probab=99.93 E-value=8.9e-26 Score=148.42 Aligned_cols=86 Identities=42% Similarity=0.709 Sum_probs=73.8
Q ss_pred CCeEEEeCCCCCCCCCCCccccCccCCCCCcCCCCcCCCCCCCCCceEEEeecCCCCccceEEEEeCCCCCCCC-CceEE
Q psy15677 1 ANFIAQTGDPTGVGTGGSSVFGLAYGDHARYYEAETQPKIPHSKPGLVSMVHCGEGLLGSQFFITLGPDLKSLN-EHCVF 79 (96)
Q Consensus 1 ~~f~iQgGD~~~~g~gg~~~~~~~~~~~~~~~~~e~~~~l~h~~~G~lsma~~~~~~~~sqFfI~~~~~~~~ld-~~~vF 79 (96)
|+|+||+||+...+.++ +.++ +.+++|..+...|.++|+|+|+++++++++|||||++.+ .++|| +|+||
T Consensus 44 ~~~~iq~Gd~~~~~~~~-~~~~-------~~~~~E~~~~~~~~~~G~v~~~~~~~~~~~sqF~Itl~~-~~~ld~~~~vf 114 (146)
T cd00317 44 PGFMIQGGDPTGTGGGG-SGPG-------YKFPDENFPLKYHHRRGTLSMANAGPNTNGSQFFITTAP-TPHLDGKHTVF 114 (146)
T ss_pred CCCeEEECCCCCCCCCC-CcCC-------CccCCccccCcCcCCCcEEEEeeCCCCCcccEEEEECCC-CcccCCCceEE
Confidence 68999999998554432 3344 568889887766888999999999999999999999986 89999 99999
Q ss_pred EEEEcCHHHHHHHHhh
Q psy15677 80 GEIAEGFDILLKLNNA 95 (96)
Q Consensus 80 G~Vi~G~dvl~~I~~~ 95 (96)
|||++||++|++|+++
T Consensus 115 G~V~~G~~vl~~I~~~ 130 (146)
T cd00317 115 GKVVEGMDVVDKIERG 130 (146)
T ss_pred EEEeCCHHHHHHHHcC
Confidence 9999999999999875
This family contains eukaryotic, bacterial and archeal proteins which exhibit a peptidylprolyl cis- trans isomerases activity (PPIase, Rotamase) and in addition bind the immunosuppressive drug cyclosporin (CsA). Immunosuppression in vertebrates is believed to be the result of the cyclophilin A-cyclosporin protein drug complex binding to and inhibiting the protein-phosphatase calcineurin. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. Cyclophilins are a diverse family in terms of function and have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. This group contains human cyclophilin 40, a co-chaperone of the hsp90 chaperone system; human cyclophilin A, a chaperone in the HIV-1 infectious process and; human cyclophilin H, a component of the U4/U6 snRNP
>KOG0885|consensus
Back Show alignment and domain information
Probab=99.93 E-value=1.8e-26 Score=170.00 Aligned_cols=76 Identities=45% Similarity=0.864 Sum_probs=73.4
Q ss_pred CCeEEEeCCCCCCCCCCCccccCccCCCCCcCCCCcCCCCCCCCCceEEEeecCCCCccceEEEEeCCCCCCCC-CceEE
Q psy15677 1 ANFIAQTGDPTGVGTGGSSVFGLAYGDHARYYEAETQPKIPHSKPGLVSMVHCGEGLLGSQFFITLGPDLKSLN-EHCVF 79 (96)
Q Consensus 1 ~~f~iQgGD~~~~g~gg~~~~~~~~~~~~~~~~~e~~~~l~h~~~G~lsma~~~~~~~~sqFfI~~~~~~~~ld-~~~vF 79 (96)
|+|++|||||+++|+||.|||| ++|.+|++++|++.++|+|+|||.+.+.||||||+||++ +|+|+ +|++|
T Consensus 59 p~f~~Qggdp~~~gtGgesiyg-------~~fadE~h~Rlrf~rrGlvgmana~~~~ngsqFfftl~~-~~el~nk~tiF 130 (439)
T KOG0885|consen 59 PGFLVQGGDPTGTGTGGESIYG-------RPFADEFHPRLRFNRRGLVGMANAGNDDNGSQFFFTLGD-TPELNNKHTIF 130 (439)
T ss_pred cchhcccCCCCCCCCCcccccc-------ccchhhcCcceeeeccceeeecccCCCCCCceEEEEecC-ChHhcccCcee
Confidence 7999999999999999999999 689999999999999999999999999999999999997 89999 99999
Q ss_pred EEEEc
Q psy15677 80 GEIAE 84 (96)
Q Consensus 80 G~Vi~ 84 (96)
|+|+.
T Consensus 131 GKVtG 135 (439)
T KOG0885|consen 131 GKVTG 135 (439)
T ss_pred eeecc
Confidence 99985
>PF00160 Pro_isomerase: Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD; InterPro: IPR002130 Cyclophilin [] is the major high-affinity binding protein in vertebrates for the immunosuppressive drug cyclosporin A (CSA), but is also found in other organisms
Back Show alignment and domain information
Probab=99.89 E-value=4.7e-23 Score=136.48 Aligned_cols=86 Identities=43% Similarity=0.644 Sum_probs=69.5
Q ss_pred CCeEEEeCCCCCCCCCCC--ccccCccCCCCCcCCCCcC-CCCCCCCCceEEEeecC--CCCccceEEEEeCCCCCCCC-
Q psy15677 1 ANFIAQTGDPTGVGTGGS--SVFGLAYGDHARYYEAETQ-PKIPHSKPGLVSMVHCG--EGLLGSQFFITLGPDLKSLN- 74 (96)
Q Consensus 1 ~~f~iQgGD~~~~g~gg~--~~~~~~~~~~~~~~~~e~~-~~l~h~~~G~lsma~~~--~~~~~sqFfI~~~~~~~~ld- 74 (96)
|+++||+||+.+.+..+. ...+ ..+++|.. ..+.| ++|+|+|++.+ +++++|||||+|.+ .++||
T Consensus 47 ~~~~i~~G~~~~~~~~~~~~~~~~-------~~~~~E~~~~~~~~-~~G~v~~~~~~~~~~~~~sqF~I~l~~-~~~ld~ 117 (155)
T PF00160_consen 47 PNFVIQGGDPTGNGGYGREDSTGG-------EPIPDEFNPSLLKH-RRGLVSMARSGKDPNSNGSQFFITLSD-APHLDG 117 (155)
T ss_dssp TTTEEEESSTTTSSSSTSEEBTTB-------SCBSSSGBTTSSSS-STTEEEEEBSSSSTTEBSSEEEEESSC-GGGGTT
T ss_pred ccceeeeeeccCCCCcccccccCc-------cccccccccccccc-cceeeeecccccCCCCCCceEEeeccC-CCcccc
Confidence 689999999986544111 1122 35888874 35667 69999999986 89999999999996 79999
Q ss_pred CceEEEEEEcCHHHHHHHHhh
Q psy15677 75 EHCVFGEIAEGFDILLKLNNA 95 (96)
Q Consensus 75 ~~~vFG~Vi~G~dvl~~I~~~ 95 (96)
+|+|||+|++||+||++|+++
T Consensus 118 ~~~vfG~V~~G~~vl~~i~~~ 138 (155)
T PF00160_consen 118 KYTVFGRVIEGMDVLDKIEAG 138 (155)
T ss_dssp TSEEEEEEEEHHHHHHHHHTS
T ss_pred ceeeeeEEehhHHHHHHHHCC
Confidence 999999999999999999874
It exhibits a peptidyl-prolyl cis-trans isomerase activity (5.2.1.8 from EC) (PPIase or rotamase). PPIase is an enzyme that accelerates protein folding by catalysing the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides []. It is probable that CSA mediates some of its effects via an forming a tight complex with cyclophilin that inhibits the phosphatase activity of calcineurin [], []. Cyclophilin A is a cytosolic and highly abundant protein. The protein belongs to a family of isozymes, including cyclophilins B and C, and natural killer cell cyclophilin-related protein [, , ]. Major isoforms have been found throughout the cell, including the ER, and some are even secreted. The sequences of the different forms of cyclophilin-type PPIases are well conserved. Note: FKBP's, a family of proteins that bind the immunosuppressive drug FK506, are also PPIases, but their sequence is not at all related to that of cyclophilin (see IPR001179 from INTERPRO).; GO: 0003755 peptidyl-prolyl cis-trans isomerase activity, 0006457 protein folding; PDB: 1Z81_A 1IHG_A 1IIP_A 3PMP_B 3O7T_A 2B71_A 1QNG_A 1QNH_A 2HQJ_A 2RMC_G ....
>TIGR03268 methan_mark_3 putative methanogenesis marker protein 3
Back Show alignment and domain information
Probab=94.65 E-value=0.062 Score=42.09 Aligned_cols=53 Identities=23% Similarity=0.355 Sum_probs=38.5
Q ss_pred CCCCcCCCCCCCCCceEEEeecCCCCccceEEEEeCCCCCCCCCceEEEEEEcCHHHHH
Q psy15677 32 YEAETQPKIPHSKPGLVSMVHCGEGLLGSQFFITLGPDLKSLNEHCVFGEIAEGFDILL 90 (96)
Q Consensus 32 ~~~e~~~~l~h~~~G~lsma~~~~~~~~sqFfI~~~~~~~~ld~~~vFG~Vi~G~dvl~ 90 (96)
.+.|+. .-.++|+|++-+.|.+.. ..||--.+..+.+ .|+|+|+|+.|||+++
T Consensus 247 ~p~En~---~~R~rGtVTVRn~G~G~G--~VYIYredr~ss~-sHtvVG~V~~GiELid 299 (503)
T TIGR03268 247 KPEENI---EKRRRGAVTVRNSGVGEG--RVYIYREDRPSSL-SHNVVGHVTRGIELID 299 (503)
T ss_pred CCcccc---CcccceeEEEEeeccCce--eEEEEcCCCCCCc-ccceeEEEecceeeee
Confidence 455543 234589999999886654 7888776522222 6999999999999875
A single member of this protein family is found in each of the first ten complete genome sequences of archaeal methanogens, and nowhere else. This protein family was detected by the method of partial phylogenetic profiling (see Haft, et al., 2006). The functions of proteins in this family are unknown, but their role is likely one essential to methanogenesis.
>PRK00969 hypothetical protein; Provisional
Back Show alignment and domain information
Probab=94.28 E-value=0.088 Score=41.33 Aligned_cols=53 Identities=21% Similarity=0.320 Sum_probs=38.4
Q ss_pred CCCCcCCCCCCCCCceEEEeecCCCCccceEEEEeCCCCCCCCCceEEEEEEcCHHHHH
Q psy15677 32 YEAETQPKIPHSKPGLVSMVHCGEGLLGSQFFITLGPDLKSLNEHCVFGEIAEGFDILL 90 (96)
Q Consensus 32 ~~~e~~~~l~h~~~G~lsma~~~~~~~~sqFfI~~~~~~~~ld~~~vFG~Vi~G~dvl~ 90 (96)
.+.|+. .-.++|+|++-+.|.+.. ..||--.+ .+.--.|+|+|+|+.|||+++
T Consensus 250 ~p~En~---~~R~~GtVTVRt~G~g~G--~vYIyred-r~ss~sHtvVG~V~~GiELi~ 302 (508)
T PRK00969 250 IPEENF---EPRRRGTVTVRTAGVGVG--KVYIYRED-RPSSLSHTVVGRVTHGIELID 302 (508)
T ss_pred CCcccc---CccccceEEEEeeccCce--eEEEECCC-CCCCccceeEEEEecceeeee
Confidence 455543 234589999999886654 78997765 222226999999999999875
>COG4070 Predicted peptidyl-prolyl cis-trans isomerase (rotamase), cyclophilin family [Posttranslational modification, protein turnover, chaperones]
Back Show alignment and domain information
Probab=88.26 E-value=0.4 Score=37.02 Aligned_cols=53 Identities=23% Similarity=0.377 Sum_probs=37.0
Q ss_pred CCCCcCCCCCCCCCceEEEeecCCCCccceEEEEeCCCCCCCCCceEEEEEEcCHHHHH
Q psy15677 32 YEAETQPKIPHSKPGLVSMVHCGEGLLGSQFFITLGPDLKSLNEHCVFGEIAEGFDILL 90 (96)
Q Consensus 32 ~~~e~~~~l~h~~~G~lsma~~~~~~~~sqFfI~~~~~~~~ld~~~vFG~Vi~G~dvl~ 90 (96)
.+.|+. .+ ..+|.+++-|.|-++. .-||.-.+..+.| .|.|.|||++||++++
T Consensus 249 ~~~en~-d~--RerG~iTvRn~GvgeG--rvYIyRedR~ss~-sHnvVGrV~eGiELid 301 (512)
T COG4070 249 VPEENF-DL--RERGAITVRNVGVGEG--RVYIYREDRPSSL-SHNVVGRVIEGIELID 301 (512)
T ss_pred CChhhh-hh--hhcceEEEEeeecccc--eEEEEecCCCCcc-ccceeeeeecceEEEE
Confidence 455543 32 3489999999886544 6788776532323 6999999999999875
>KOG0882|consensus
Back Show alignment and domain information
Probab=82.70 E-value=4.3 Score=32.07 Aligned_cols=58 Identities=12% Similarity=0.133 Sum_probs=44.1
Q ss_pred cCCCCCCCCCceEEEeecCCCCccceEEEEeCCCCCCCC-CceEEEEEEcCHHHHHHHHhh
Q psy15677 36 TQPKIPHSKPGLVSMVHCGEGLLGSQFFITLGPDLKSLN-EHCVFGEIAEGFDILLKLNNA 95 (96)
Q Consensus 36 ~~~~l~h~~~G~lsma~~~~~~~~sqFfI~~~~~~~~ld-~~~vFG~Vi~G~dvl~~I~~~ 95 (96)
....++|+ .-++........-.+-+|++.-.. .+-+. +..|||+|..+-++++.|+++
T Consensus 184 l~~~~K~e-TdLy~f~K~Kt~pts~Efsp~g~q-istl~~DrkVR~F~~KtGklvqeiDE~ 242 (558)
T KOG0882|consen 184 LNFELKHE-TDLYGFPKAKTEPTSFEFSPDGAQ-ISTLNPDRKVRGFVFKTGKLVQEIDEV 242 (558)
T ss_pred cccccccc-chhhcccccccCccceEEccccCc-ccccCcccEEEEEEeccchhhhhhhcc
Confidence 34578887 567777666655556688887764 66777 999999999999999998764
>TIGR03268 methan_mark_3 putative methanogenesis marker protein 3
Back Show alignment and domain information
Probab=80.70 E-value=3.7 Score=32.46 Aligned_cols=52 Identities=10% Similarity=0.091 Sum_probs=38.8
Q ss_pred CCCceEEEeecCCCCccceEEEEeCCCCCCC--C-CceEEEEEEcCHHHHHHHHh
Q psy15677 43 SKPGLVSMVHCGEGLLGSQFFITLGPDLKSL--N-EHCVFGEIAEGFDILLKLNN 94 (96)
Q Consensus 43 ~~~G~lsma~~~~~~~~sqFfI~~~~~~~~l--d-~~~vFG~Vi~G~dvl~~I~~ 94 (96)
..++.|.+.-+|-+...+.+-|.-.+..... . ..-+||+|+.|..+|+++..
T Consensus 110 y~r~DV~lg~~G~d~~~thLIfsk~~h~~~YG~p~~~gvigrvi~Gk~vl~~L~~ 164 (503)
T TIGR03268 110 YERWDVILSLSGFDPDETHIIFSKKRHAAEYGVPDENGIIARVVGGKRVIDRLSD 164 (503)
T ss_pred eecccEEEEccCCCCCCceEEEEecchhhhhCCCCCCCEEEEEccchhhHhhccC
Confidence 3478899999997777777777666533222 3 56899999999999998753
A single member of this protein family is found in each of the first ten complete genome sequences of archaeal methanogens, and nowhere else. This protein family was detected by the method of partial phylogenetic profiling (see Haft, et al., 2006). The functions of proteins in this family are unknown, but their role is likely one essential to methanogenesis.
>PRK00969 hypothetical protein; Provisional
Back Show alignment and domain information
Probab=80.39 E-value=3.4 Score=32.72 Aligned_cols=52 Identities=13% Similarity=0.144 Sum_probs=37.5
Q ss_pred CCCceEEEeecCCCCccceEEEEeCCCCCCCC--CceEEEEEEcCHHHHHHHHh
Q psy15677 43 SKPGLVSMVHCGEGLLGSQFFITLGPDLKSLN--EHCVFGEIAEGFDILLKLNN 94 (96)
Q Consensus 43 ~~~G~lsma~~~~~~~~sqFfI~~~~~~~~ld--~~~vFG~Vi~G~dvl~~I~~ 94 (96)
..++.|.+..+|-+...+.+-|.-.+...... .--+||+|+.|..+|+++.+
T Consensus 114 y~r~DV~lg~~G~dp~~thLIfsk~~h~a~YG~p~~gv~grVi~Gk~vl~~L~~ 167 (508)
T PRK00969 114 YERWDVVLSLSGFDPSETHLIFSKRDHSADYGAPNDGVIGRVVGGKRVLDRLTD 167 (508)
T ss_pred eecccEEEEccCCCCCCceEEEEecchhhhhCCCCCCceEEEccchhhHhhccC
Confidence 34788999999977666666666654322222 23899999999999998764
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
ID Alignment Graph Length
Definition
E-value Query 96
d1xwna1 166
b.62.1.1 (A:1-166) Peptidyl-prolyl cis-trans isome
3e-15 d2ok3a1 159
b.62.1.1 (A:1-159) Cyclophilin-like protein PPIL3B
2e-12 d1qnga_ 170
b.62.1.1 (A:) Cyclophilin (eukaryotic) {Plasmodium
3e-11 d1zkca1 178
b.62.1.1 (A:280-457) Peptidyl-prolyl cis-trans iso
1e-10 d2cfea1 162
b.62.1.1 (A:1-162) Cyclophilin-like allergen Mal s
9e-10 d2b71a1 169
b.62.1.1 (A:23-191) Cyclophilin-like protein PY006
1e-09 d2rmca_ 182
b.62.1.1 (A:) Cyclophilin (eukaryotic) {Mouse (Mus
4e-09 d1xo7a_ 166
b.62.1.1 (A:) Cyclophilin (eukaryotic) {Trypanosom
7e-09 d1a33a_ 174
b.62.1.1 (A:) Cyclophilin (eukaryotic) {Nematode (
8e-09 d2fu0a1 155
b.62.1.1 (A:5-159) Putative cyclophilin PFE0505w {
9e-09 d1w74a_ 171
b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase
1e-08 d1h0pa_ 182
b.62.1.1 (A:) Cyclophilin (eukaryotic) {Caenorhabd
1e-08 d2igva1 172
b.62.1.1 (A:1-172) Cyclophilin (eukaryotic) {Caeno
1e-08 d1ihga2 195
b.62.1.1 (A:2-196) Cyclophilin 40 isomerase domain
4e-08 d2a2na1 164
b.62.1.1 (A:483-646) Peptidylprolyl isomerase doma
1e-07 d2c3ba1 171
b.62.1.1 (A:1-171) Cyclophilin (eukaryotic) {Asper
8e-07 d1qoia_ 173
b.62.1.1 (A:) Cyclophilin (eukaryotic) {Human (Hom
3e-06 d2z6wa1 164
b.62.1.1 (A:2-165) Mitochondrial peptidyl-prolyl c
1e-05 d1z81a1 186
b.62.1.1 (A:25-210) Cyclophilin (eukaryotic) {Plas
9e-05 d1v9ta_ 166
b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase
3e-04
>d1xwna1 b.62.1.1 (A:1-166) Peptidyl-prolyl cis-trans isomerase-like 1, PPIL1 {Human (Homo sapiens) [TaxId: 9606]} Length = 166
Back Hide information, alignment and structure
class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase-like 1, PPIL1
species: Human (Homo sapiens) [TaxId: 9606]
Score = 64.4 bits (156), Expect = 3e-15
Identities = 30/94 (31%), Positives = 52/94 (55%), Gaps = 7/94 (7%)
Query: 2 NFIAQTGDPTGVGTGGSSVFGLAYGDHARYYEAETQPKIPHSKPGLVSMVHCGEGLLGSQ 61
+F+ Q GDPTG G GG+S++G + +E E P + + G+++M + G GSQ
Sbjct: 59 DFMIQGGDPTGTGRGGASIYG-------KQFEDELHPDLKFTGAGILAMANAGPDTNGSQ 111
Query: 62 FFITLGPDLKSLNEHCVFGEIAEGFDILLKLNNA 95
FF+TL P +H +FG + +G ++ ++
Sbjct: 112 FFVTLAPTQWLDGKHTIFGRVCQGIGMVNRVGMV 145
>d2ok3a1 b.62.1.1 (A:1-159) Cyclophilin-like protein PPIL3B {Human (Homo sapiens) [TaxId: 9606]} Length = 159
Back Show information, alignment and structure
class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin-like protein PPIL3B
species: Human (Homo sapiens) [TaxId: 9606]
Score = 57.1 bits (137), Expect = 2e-12
Identities = 35/94 (37%), Positives = 52/94 (55%), Gaps = 7/94 (7%)
Query: 2 NFIAQTGDPTGVGTGGSSVFGLAYGDHARYYEAETQPKIPHSKPGLVSMVHCGEGLLGSQ 61
F+ QTGDPTG G GG+S++G + +E E + H+ G+VSM + G GSQ
Sbjct: 48 GFMVQTGDPTGTGRGGNSIWG-------KKFEDEYSEYLKHNVRGVVSMANNGPNTNGSQ 100
Query: 62 FFITLGPDLKSLNEHCVFGEIAEGFDILLKLNNA 95
FFIT G ++ VFG++ +G + L +L
Sbjct: 101 FFITYGKQPHLDMKYTVFGKVIDGLETLDELEKL 134
>d1qnga_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Plasmodium falciparum [TaxId: 5833]} Length = 170
Back Show information, alignment and structure
class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Plasmodium falciparum [TaxId: 5833]
Score = 54.5 bits (130), Expect = 3e-11
Identities = 32/95 (33%), Positives = 50/95 (52%), Gaps = 9/95 (9%)
Query: 2 NFIAQTGDP-TGVGTGGSSVFGLAYGDHARYYEAETQPKIPHSKPGLVSMVHCGEGLLGS 60
F+ Q GD G G+GG S++G ++ D + H +PGL+SM + G S
Sbjct: 65 QFMCQGGDITNGNGSGGESIYGRSFTDEN--------FNMKHDQPGLLSMANAGPNTNSS 116
Query: 61 QFFITLGPDLKSLNEHCVFGEIAEGFDILLKLNNA 95
QFFITL P +H VFG++ EG +++ ++
Sbjct: 117 QFFITLVPCPWLDGKHVVFGKVIEGMNVVREMEKE 151
>d1zkca1 b.62.1.1 (A:280-457) Peptidyl-prolyl cis-trans isomerase-like 2, Cyclophilin-60, PPI domain {Human (Homo sapiens) [TaxId: 9606]} Length = 178
Back Show information, alignment and structure
class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase-like 2, Cyclophilin-60, PPI domain
species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.8 bits (126), Expect = 1e-10
Identities = 35/94 (37%), Positives = 51/94 (54%), Gaps = 7/94 (7%)
Query: 2 NFIAQTGDPTGVGTGGSSVFGLAYGDHARYYEAETQPKIPHSKPGLVSMVHCGEGLLGSQ 61
NF+ Q GDPTG GTGG S +G + ++ E +P + H+ G++SM + G SQ
Sbjct: 48 NFVIQGGDPTGTGTGGESYWG-------KPFKDEFRPNLSHTGRGILSMANSGPNSNRSQ 100
Query: 62 FFITLGPDLKSLNEHCVFGEIAEGFDILLKLNNA 95
FFIT +H +FG + GFD+L + N
Sbjct: 101 FFITFRSCAYLDKKHTIFGRVVGGFDVLTAMENV 134
>d2cfea1 b.62.1.1 (A:1-162) Cyclophilin-like allergen Mal s 6 {Malassezia sympodialis [TaxId: 76777]} Length = 162
Back Show information, alignment and structure
class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin-like allergen Mal s 6
species: Malassezia sympodialis [TaxId: 76777]
Score = 50.1 bits (119), Expect = 9e-10
Identities = 34/94 (36%), Positives = 51/94 (54%), Gaps = 9/94 (9%)
Query: 2 NFIAQTGDPT-GVGTGGSSVFGLAYGDHARYYEAETQPKIPHSKPGLVSMVHCGEGLLGS 60
+F+ Q GD T G GTGG S++G A+ ++ H+KPGL+SM + G GS
Sbjct: 57 DFMLQGGDFTAGNGTGGKSIYG--------AKFADENFQLKHNKPGLLSMANAGPNTNGS 108
Query: 61 QFFITLGPDLKSLNEHCVFGEIAEGFDILLKLNN 94
QFFIT +H VFGE+ +G +++ +
Sbjct: 109 QFFITTVVTSWLDGKHVVFGEVIDGMNVVKAIEA 142
>d2b71a1 b.62.1.1 (A:23-191) Cyclophilin-like protein PY00693 {Plasmodium yoelii [TaxId: 5861]} Length = 169
Back Show information, alignment and structure
class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin-like protein PY00693
species: Plasmodium yoelii [TaxId: 5861]
Score = 49.8 bits (118), Expect = 1e-09
Identities = 18/69 (26%), Positives = 34/69 (49%)
Query: 27 DHARYYEAETQPKIPHSKPGLVSMVHCGEGLLGSQFFITLGPDLKSLNEHCVFGEIAEGF 86
+ Y+E E ++ H+ G++SM + G SQFFITL P +H +F +++
Sbjct: 82 IYGEYFEDEINKELKHTGAGILSMSNNGPNTNSSQFFITLAPLPHLDGKHTIFARVSKNM 141
Query: 87 DILLKLNNA 95
+ + +
Sbjct: 142 TCIENIASV 150
>d2rmca_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Mouse (Mus musculus), variant C [TaxId: 10090]} Length = 182
Back Show information, alignment and structure
class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Mouse (Mus musculus), variant C [TaxId: 10090]
Score = 48.7 bits (115), Expect = 4e-09
Identities = 31/95 (32%), Positives = 45/95 (47%), Gaps = 9/95 (9%)
Query: 2 NFIAQTGDPT-GVGTGGSSVFGLAYGDHARYYEAETQPKIPHSKPGLVSMVHCGEGLLGS 60
+F+ Q GD T GTGG S++G + K+ H G VSM + G GS
Sbjct: 63 DFMIQGGDFTARDGTGGMSIYG--------ETFPDENFKLKHYGIGWVSMANAGPDTNGS 114
Query: 61 QFFITLGPDLKSLNEHCVFGEIAEGFDILLKLNNA 95
QFFITL +H VFG++ +G ++ +
Sbjct: 115 QFFITLTKPTWLDGKHVVFGKVLDGMTVVHSIELQ 149
>d1xo7a_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Trypanosoma cruzi [TaxId: 5693]} Length = 166
Back Show information, alignment and structure
class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Trypanosoma cruzi [TaxId: 5693]
Score = 47.9 bits (113), Expect = 7e-09
Identities = 33/95 (34%), Positives = 45/95 (47%), Gaps = 10/95 (10%)
Query: 2 NFIAQTGDPT-GVGTGGSSVFGLAYGDHARYYEAETQPKIPHSKPGLVSMVHCGEGLLGS 60
NF+ Q GD T GTGG S++G + + G VSM + G GS
Sbjct: 61 NFMIQGGDFTNFDGTGGKSIYG---------TRFDDENLKIKHFVGAVSMANAGPNSNGS 111
Query: 61 QFFITLGPDLKSLNEHCVFGEIAEGFDILLKLNNA 95
QFF+T P H VFG++ EG D++ K+ N
Sbjct: 112 QFFVTTAPTPWLDGRHVVFGKVVEGMDVVKKVENT 146
>d1a33a_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Nematode (Brugia malayi) [TaxId: 6279]} Length = 174
Back Show information, alignment and structure
class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Nematode (Brugia malayi) [TaxId: 6279]
Score = 47.9 bits (113), Expect = 8e-09
Identities = 35/95 (36%), Positives = 49/95 (51%), Gaps = 9/95 (9%)
Query: 2 NFIAQTGDPT-GVGTGGSSVFGLAYGDHARYYEAETQPKIPHSKPGLVSMVHCGEGLLGS 60
NF+ Q GD T G GTGG S++G + D + H +P +VSM + G GS
Sbjct: 67 NFMIQGGDFTKGDGTGGESIYGGMFDDEE--------FVMKHDEPFVVSMANKGPNTNGS 118
Query: 61 QFFITLGPDLKSLNEHCVFGEIAEGFDILLKLNNA 95
QFFIT P N H VFG++ G +++ K+
Sbjct: 119 QFFITTTPAPHLNNIHVVFGKVVSGQEVVTKIEYL 153
>d2fu0a1 b.62.1.1 (A:5-159) Putative cyclophilin PFE0505w {Plasmodium falciparum [TaxId: 5833]} Length = 155
Back Show information, alignment and structure
class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Putative cyclophilin PFE0505w
species: Plasmodium falciparum [TaxId: 5833]
Score = 47.6 bits (112), Expect = 9e-09
Identities = 38/94 (40%), Positives = 53/94 (56%), Gaps = 7/94 (7%)
Query: 2 NFIAQTGDPTGVGTGGSSVFGLAYGDHARYYEAETQPKIPHSKPGLVSMVHCGEGLLGSQ 61
+F+ QTGDP+G GTGG S++G + D + HSKP +VSM +CG GSQ
Sbjct: 49 HFMVQTGDPSGDGTGGESIWGNEFEDEF-------FDHLNHSKPFMVSMANCGPNTNGSQ 101
Query: 62 FFITLGPDLKSLNEHCVFGEIAEGFDILLKLNNA 95
FFIT P +H VFG++ +G I+L +
Sbjct: 102 FFITTVPCPWLDFKHTVFGKVTQGSKIVLDIEKV 135
>d1w74a_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA {Mycobacterium tuberculosis [TaxId: 1773]} Length = 171
Back Show information, alignment and structure
class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase A, PpiA
species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 47.5 bits (112), Expect = 1e-08
Identities = 32/96 (33%), Positives = 46/96 (47%), Gaps = 12/96 (12%)
Query: 2 NFIAQTGDPTGVGTGGSSVFGLAYGDHARYYEAETQPKIPHSKPGLVSMVHCGEGLLGSQ 61
F+ Q GDPTG G GG + E P++ KP L++M + G G GSQ
Sbjct: 66 GFMIQGGDPTGTGRGG----------PGYKFADEFHPELQFDKPYLLAMANAGPGTNGSQ 115
Query: 62 FFITLGPDLKSLNEHCVFGEI--AEGFDILLKLNNA 95
FFIT+G H +FGE+ AE ++ ++
Sbjct: 116 FFITVGKTPHLNRRHTIFGEVIDAESQRVVEAISKT 151
>d1h0pa_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Caenorhabditis elegans, isoform 5 [TaxId: 6239]} Length = 182
Back Show information, alignment and structure
class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Caenorhabditis elegans, isoform 5 [TaxId: 6239]
Score = 47.5 bits (112), Expect = 1e-08
Identities = 35/95 (36%), Positives = 47/95 (49%), Gaps = 9/95 (9%)
Query: 2 NFIAQTGDPT-GVGTGGSSVFGLAYGDHARYYEAETQPKIPHSKPGLVSMVHCGEGLLGS 60
+F+ Q GD T G GTGG S++G A+ K+ H G +SM + G GS
Sbjct: 62 DFMIQGGDFTRGDGTGGRSIYG--------EKFADENFKLKHYGAGWLSMANAGADTNGS 113
Query: 61 QFFITLGPDLKSLNEHCVFGEIAEGFDILLKLNNA 95
QFFIT H VFG+I EG D++ K+
Sbjct: 114 QFFITTVKTPWLDGRHVVFGKILEGMDVVRKIEQT 148
>d2igva1 b.62.1.1 (A:1-172) Cyclophilin (eukaryotic) {Caenorhabditis elegans, isoform 3 [TaxId: 6239]} Length = 172
Back Show information, alignment and structure
class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Caenorhabditis elegans, isoform 3 [TaxId: 6239]
Score = 47.1 bits (111), Expect = 1e-08
Identities = 32/94 (34%), Positives = 47/94 (50%), Gaps = 9/94 (9%)
Query: 2 NFIAQTGDP-TGVGTGGSSVFGLAYGDHARYYEAETQPKIPHSKPGLVSMVHCGEGLLGS 60
NF+ Q GD G GTGG S++G + D K H+ PG++SM + G GS
Sbjct: 66 NFMIQGGDFTRGNGTGGESIYGEKFPD--------ENFKEKHTGPGVLSMANAGPNTNGS 117
Query: 61 QFFITLGPDLKSLNEHCVFGEIAEGFDILLKLNN 94
QFF+ +H VFG + EG D++ + +
Sbjct: 118 QFFLCTVKTEWLDGKHVVFGRVVEGLDVVKAVES 151
>d1ihga2 b.62.1.1 (A:2-196) Cyclophilin 40 isomerase domain {Cow (Bos taurus) [TaxId: 9913]} Length = 195
Back Show information, alignment and structure
class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin 40 isomerase domain
species: Cow (Bos taurus) [TaxId: 9913]
Score = 46.0 bits (108), Expect = 4e-08
Identities = 33/95 (34%), Positives = 44/95 (46%), Gaps = 9/95 (9%)
Query: 2 NFIAQTGD-PTGVGTGGSSVFGLAYGDHARYYEAETQPKIPHSKPGLVSMVHCGEGLLGS 60
F+ Q GD GTGG S++G + D H K GL+SM + G GS
Sbjct: 78 KFMIQGGDFSNQNGTGGESIYGEKFEDEN--------FHYKHDKEGLLSMANAGSNTNGS 129
Query: 61 QFFITLGPDLKSLNEHCVFGEIAEGFDILLKLNNA 95
QFFIT P +H VFG++ +G + L N
Sbjct: 130 QFFITTVPTPHLDGKHVVFGQVIKGMGVAKILENV 164
>d2a2na1 b.62.1.1 (A:483-646) Peptidylprolyl isomerase domain and WD repeat-containing protein 1, PPWD1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 164
Back Show information, alignment and structure
class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidylprolyl isomerase domain and WD repeat-containing protein 1, PPWD1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.6 bits (104), Expect = 1e-07
Identities = 33/94 (35%), Positives = 49/94 (52%), Gaps = 7/94 (7%)
Query: 2 NFIAQTGDPTGVGTGGSSVFGLAYGDHARYYEAETQPKIPHSKPGLVSMVHCGEGLLGSQ 61
F+ QTGDPTG G GG +E E + H +P +SM + G GSQ
Sbjct: 57 GFMIQTGDPTGTGMGG-------ESIWGGEFEDEFHSTLRHDRPYTLSMANAGSNTNGSQ 109
Query: 62 FFITLGPDLKSLNEHCVFGEIAEGFDILLKLNNA 95
FFIT+ P N+H VFG + +G +++ +++N
Sbjct: 110 FFITVVPTPWLDNKHTVFGRVTKGMEVVQRISNV 143
>d2c3ba1 b.62.1.1 (A:1-171) Cyclophilin (eukaryotic) {Aspergillus fumigatus [TaxId: 5085]} Length = 171
Back Show information, alignment and structure
class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Aspergillus fumigatus [TaxId: 5085]
Score = 42.5 bits (99), Expect = 8e-07
Identities = 32/97 (32%), Positives = 47/97 (48%), Gaps = 11/97 (11%)
Query: 2 NFIAQTGDP-TGVGTGGSSVFGLAYGDHARYYEAETQPKIPHSKPGLVSMVHCGEGLLGS 60
NF+ Q GD G GTGG S++G A+ H K G++SM + G GS
Sbjct: 62 NFMIQGGDFTRGNGTGGRSIYG--------DKFADENFSRKHDKKGILSMANAGPNTNGS 113
Query: 61 QFFITLGPDLKSLNEHCVFGEIAE--GFDILLKLNNA 95
QFFIT +H VFGE+A+ + ++ ++
Sbjct: 114 QFFITTAVTSWLDGKHVVFGEVADEKSYSVVKEIEAL 150
>d1qoia_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Human (Homo sapiens), U4/U6 snRNP-specific cyclophilin snucyp-20 [TaxId: 9606]} Length = 173
Back Show information, alignment and structure
class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Human (Homo sapiens), U4/U6 snRNP-specific cyclophilin snucyp-20 [TaxId: 9606]
Score = 41.0 bits (95), Expect = 3e-06
Identities = 29/93 (31%), Positives = 39/93 (41%), Gaps = 3/93 (3%)
Query: 3 FIAQTGDPTGVGTGGSSVFGLAYGDHARYYEAETQPKIPHSKPGLVSMVHCGEGLLGSQF 62
I G G G R A+ K+ HS PGL+SM + G G QF
Sbjct: 64 VIKDFMIQGGDFVNG---DGTGVASIYRGPFADENFKLRHSAPGLLSMANSGPSTNGCQF 120
Query: 63 FITLGPDLKSLNEHCVFGEIAEGFDILLKLNNA 95
FIT +H VFG+I +G ++ K+ N
Sbjct: 121 FITCSKCDWLDGKHVVFGKIIDGLLVMRKIENV 153
>d2z6wa1 b.62.1.1 (A:2-165) Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F {Human (Homo sapiens) [TaxId: 9606]} Length = 164
Back Show information, alignment and structure
class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F
species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.4 bits (91), Expect = 1e-05
Identities = 30/95 (31%), Positives = 45/95 (47%), Gaps = 9/95 (9%)
Query: 2 NFIAQTGD-PTGVGTGGSSVFGLAYGDHARYYEAETQPKIPHSKPGLVSMVHCGEGLLGS 60
+F+ Q GD GTGG S++G + + H PG++SM + G GS
Sbjct: 58 SFMCQAGDFTNHNGTGGKSIYG--------SRFPDENFTLKHVGPGVLSMANAGPNTNGS 109
Query: 61 QFFITLGPDLKSLNEHCVFGEIAEGFDILLKLNNA 95
QFFI +H VFG + EG D++ K+ +
Sbjct: 110 QFFICTIKTDWLDGKHVVFGHVIEGMDVVKKIESF 144
>d1z81a1 b.62.1.1 (A:25-210) Cyclophilin (eukaryotic) {Plasmodium yoelii [TaxId: 5861]} Length = 186
Back Show information, alignment and structure
class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Plasmodium yoelii [TaxId: 5861]
Score = 36.8 bits (84), Expect = 9e-05
Identities = 23/84 (27%), Positives = 32/84 (38%), Gaps = 2/84 (2%)
Query: 14 GTGGSSVFGLAYGDHARYYEAETQPKIPHSKPGLVSMVHCGEGLLGSQFFITLGPDLKSL 73
G + G + I H K GL+SM + G G QFFIT
Sbjct: 82 GGDFINHNGSGSLSIYGEKFDDENFDIKHDKEGLLSMANSGPNTNGCQFFITTKKCEWLD 141
Query: 74 NEHCVFGEIAEG--FDILLKLNNA 95
++ VFG I + +L K+ N
Sbjct: 142 GKNVVFGRIIDNDSLLLLKKIENV 165
>d1v9ta_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA {Escherichia coli [TaxId: 562]} Length = 166
Back Show information, alignment and structure
class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase A, PpiA
species: Escherichia coli [TaxId: 562]
Score = 35.3 bits (80), Expect = 3e-04
Identities = 12/76 (15%), Positives = 29/76 (38%), Gaps = 5/76 (6%)
Query: 25 YGDHARYYEAETQPKIPHSKPGLVSMVHCGEGLLGSQFFITLGPDLKSLNE-----HCVF 79
+ E + +++ + + SQFFI + + + + VF
Sbjct: 66 QKKPNPPIKNEADNGLRNTRGTIAMARTADKDSATSQFFINVADNAFLDHGQRDFGYAVF 125
Query: 80 GEIAEGFDILLKLNNA 95
G++ +G D+ K++
Sbjct: 126 GKVVKGMDVADKISQV 141
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
ID Alignment Graph Length
Definition
Probability Query 96
d2ok3a1 159
Cyclophilin-like protein PPIL3B {Human (Homo sapie
99.96 d1xwna1 166
Peptidyl-prolyl cis-trans isomerase-like 1, PPIL1
99.96 d1zkca1 178
Peptidyl-prolyl cis-trans isomerase-like 2, Cyclop
99.96 d2fu0a1 155
Putative cyclophilin PFE0505w {Plasmodium falcipar
99.96 d2b71a1 169
Cyclophilin-like protein PY00693 {Plasmodium yoeli
99.95 d1qnga_ 170
Cyclophilin (eukaryotic) {Plasmodium falciparum [T
99.95 d2cfea1 162
Cyclophilin-like allergen Mal s 6 {Malassezia symp
99.95 d2r99a1 161
Mitochondrial peptidyl-prolyl cis-trans isomerase,
99.95 d2igva1 172
Cyclophilin (eukaryotic) {Caenorhabditis elegans,
99.95 d2z6wa1 164
Mitochondrial peptidyl-prolyl cis-trans isomerase,
99.95 d1h0pa_ 182
Cyclophilin (eukaryotic) {Caenorhabditis elegans,
99.94 d2rmca_ 182
Cyclophilin (eukaryotic) {Mouse (Mus musculus), va
99.94 d1xo7a_ 166
Cyclophilin (eukaryotic) {Trypanosoma cruzi [TaxId
99.94 d1qoia_ 173
Cyclophilin (eukaryotic) {Human (Homo sapiens), U4
99.94 d1ihga2 195
Cyclophilin 40 isomerase domain {Cow (Bos taurus)
99.94 d1a33a_ 174
Cyclophilin (eukaryotic) {Nematode (Brugia malayi)
99.94 d1w74a_ 171
Peptidyl-prolyl cis-trans isomerase A, PpiA {Mycob
99.94 d2a2na1 164
Peptidylprolyl isomerase domain and WD repeat-cont
99.93 d2c3ba1 171
Cyclophilin (eukaryotic) {Aspergillus fumigatus [T
99.93 d1z81a1 186
Cyclophilin (eukaryotic) {Plasmodium yoelii [TaxId
99.93 d1v9ta_ 166
Peptidyl-prolyl cis-trans isomerase A, PpiA {Esche
99.91 d1lopa_ 164
Peptidyl-prolyl cis-trans isomerase A, PpiA {Esche
99.91
>d2ok3a1 b.62.1.1 (A:1-159) Cyclophilin-like protein PPIL3B {Human (Homo sapiens) [TaxId: 9606]}
Back Hide information, alignment and structure
class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin-like protein PPIL3B
species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=9.2e-30 Score=167.60 Aligned_cols=87 Identities=41% Similarity=0.741 Sum_probs=78.0
Q ss_pred CCeEEEeCCCCCCCCCCCccccCccCCCCCcCCCCcCCCCCCCCCceEEEeecCCCCccceEEEEeCCCCCCCC-CceEE
Q psy15677 1 ANFIAQTGDPTGVGTGGSSVFGLAYGDHARYYEAETQPKIPHSKPGLVSMVHCGEGLLGSQFFITLGPDLKSLN-EHCVF 79 (96)
Q Consensus 1 ~~f~iQgGD~~~~g~gg~~~~~~~~~~~~~~~~~e~~~~l~h~~~G~lsma~~~~~~~~sqFfI~~~~~~~~ld-~~~vF 79 (96)
|+|+||+||+...+.++...|+ ..++.|..+.++|.++|+||||++++++++|||||++.+ .|+|| +|+||
T Consensus 47 ~~~~iq~Gd~~~~~~~~~~~~~-------~~~~~e~~~~~~~~~~G~lsma~~~~~s~~sqFfIt~~~-~p~ld~~~tvF 118 (159)
T d2ok3a1 47 KGFMVQTGDPTGTGRGGNSIWG-------KKFEDEYSEYLKHNVRGVVSMANNGPNTNGSQFFITYGK-QPHLDMKYTVF 118 (159)
T ss_dssp TTTEEEECCTTSSSSCCCCTTS-------SCBCCCCCTTCCSCSTTEEEECCSSTTCBCSCEEEESSC-CGGGTTTSCEE
T ss_pred CCeEEEeCCccccCCCCcccCC-------CccccccccCCCCCCCeEEEEeeCCCCCcCcceEeeecc-CcccccceEEE
Confidence 6899999999877777777676 457777777899999999999999999999999999996 79999 99999
Q ss_pred EEEEcCHHHHHHHHhh
Q psy15677 80 GEIAEGFDILLKLNNA 95 (96)
Q Consensus 80 G~Vi~G~dvl~~I~~~ 95 (96)
|||++||+||++|+++
T Consensus 119 G~V~~G~~vl~~I~~~ 134 (159)
T d2ok3a1 119 GKVIDGLETLDELEKL 134 (159)
T ss_dssp EEEEECHHHHHHHHTC
T ss_pred EecccchHHHHHHHcC
Confidence 9999999999999875
>d1xwna1 b.62.1.1 (A:1-166) Peptidyl-prolyl cis-trans isomerase-like 1, PPIL1 {Human (Homo sapiens) [TaxId: 9606]}
Back Show information, alignment and structure
class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase-like 1, PPIL1
species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=1.5e-29 Score=167.73 Aligned_cols=87 Identities=36% Similarity=0.801 Sum_probs=80.1
Q ss_pred CCeEEEeCCCCCCCCCCCccccCccCCCCCcCCCCcCCCCCCCCCceEEEeecCCCCccceEEEEeCCCCCCCC-CceEE
Q psy15677 1 ANFIAQTGDPTGVGTGGSSVFGLAYGDHARYYEAETQPKIPHSKPGLVSMVHCGEGLLGSQFFITLGPDLKSLN-EHCVF 79 (96)
Q Consensus 1 ~~f~iQgGD~~~~g~gg~~~~~~~~~~~~~~~~~e~~~~l~h~~~G~lsma~~~~~~~~sqFfI~~~~~~~~ld-~~~vF 79 (96)
|+|+||+||+++.+.++.+.++ ..+++|..+.+.|.++|+|||+++++++++|||||++.+ .++|| +|+||
T Consensus 58 ~~~~iq~Gd~~~~~~~~~~~~~-------~~~~~e~~~~~~~~~~G~lsm~~~~~~s~~sqFfI~~~~-~~~ld~~~tvF 129 (166)
T d1xwna1 58 KDFMIQGGDPTGTGRGGASIYG-------KQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAP-TQWLDGKHTIF 129 (166)
T ss_dssp TTTEEEECCSTTTTSSCCCSSC-------SCCCCCCCTTCCSCSSSEEEEEEEETTEEEEEEEEECSC-CSTTTTTSEEE
T ss_pred ccEEEEeCCCCCCCCCCccCCC-------CccccccCCCCCCCCCeEEEecccCCCCCCcceEEeecC-hhhccccceEE
Confidence 6899999999988888888887 568888777899999999999999999999999999996 79999 99999
Q ss_pred EEEEcCHHHHHHHHhh
Q psy15677 80 GEIAEGFDILLKLNNA 95 (96)
Q Consensus 80 G~Vi~G~dvl~~I~~~ 95 (96)
|||++|||||++|+++
T Consensus 130 G~Vi~G~dvl~~I~~~ 145 (166)
T d1xwna1 130 GRVCQGIGMVNRVGMV 145 (166)
T ss_dssp EECSSCHHHHHHHHHS
T ss_pred EEEechHHHHHHHHhC
Confidence 9999999999999875
>d1zkca1 b.62.1.1 (A:280-457) Peptidyl-prolyl cis-trans isomerase-like 2, Cyclophilin-60, PPI domain {Human (Homo sapiens) [TaxId: 9606]}
Back Show information, alignment and structure
class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase-like 2, Cyclophilin-60, PPI domain
species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=4.5e-29 Score=167.04 Aligned_cols=87 Identities=41% Similarity=0.796 Sum_probs=80.2
Q ss_pred CCeEEEeCCCCCCCCCCCccccCccCCCCCcCCCCcCCCCCCCCCceEEEeecCCCCccceEEEEeCCCCCCCC-CceEE
Q psy15677 1 ANFIAQTGDPTGVGTGGSSVFGLAYGDHARYYEAETQPKIPHSKPGLVSMVHCGEGLLGSQFFITLGPDLKSLN-EHCVF 79 (96)
Q Consensus 1 ~~f~iQgGD~~~~g~gg~~~~~~~~~~~~~~~~~e~~~~l~h~~~G~lsma~~~~~~~~sqFfI~~~~~~~~ld-~~~vF 79 (96)
|+|+||+||+..+++++.+.++ ..+++|..+.++|.++|+||||++++++++|||||++.+ .++|| +|+||
T Consensus 47 ~~~~iq~Gd~~~~~~~~~~~~~-------~~~~~E~~~~l~~~~~G~lsma~~~~~s~~sqF~It~~~-~~~ld~~~~vF 118 (178)
T d1zkca1 47 RNFVIQGGDPTGTGTGGESYWG-------KPFKDEFRPNLSHTGRGILSMANSGPNSNRSQFFITFRS-CAYLDKKHTIF 118 (178)
T ss_dssp TTTEEEECCTTSSSSCCCBTTB-------SCBCCCCCTTCCSCSTTEEEECCSSTTCBCSCEEEESSC-CGGGTTTSCEE
T ss_pred ceeEEecCCccCCCCCCcccCC-------CCcCCccccccCCCCCeEEEEeecCCCCccceeeccccC-CcccCCcceEE
Confidence 6899999999988888888777 578888777899999999999999999999999999996 79999 99999
Q ss_pred EEEEcCHHHHHHHHhh
Q psy15677 80 GEIAEGFDILLKLNNA 95 (96)
Q Consensus 80 G~Vi~G~dvl~~I~~~ 95 (96)
|||++|||||++|+++
T Consensus 119 G~Vv~G~dvl~~I~~~ 134 (178)
T d1zkca1 119 GRVVGGFDVLTAMENV 134 (178)
T ss_dssp EEEEECHHHHHHHHHS
T ss_pred EEeeCcHHHHHHHHcC
Confidence 9999999999999875
>d2fu0a1 b.62.1.1 (A:5-159) Putative cyclophilin PFE0505w {Plasmodium falciparum [TaxId: 5833]}
Back Show information, alignment and structure
class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Putative cyclophilin PFE0505w
species: Plasmodium falciparum [TaxId: 5833]
Probab=99.96 E-value=4.1e-29 Score=163.66 Aligned_cols=87 Identities=46% Similarity=0.809 Sum_probs=80.4
Q ss_pred CCeEEEeCCCCCCCCCCCccccCccCCCCCcCCCCcCCCCCCCCCceEEEeecCCCCccceEEEEeCCCCCCCC-CceEE
Q psy15677 1 ANFIAQTGDPTGVGTGGSSVFGLAYGDHARYYEAETQPKIPHSKPGLVSMVHCGEGLLGSQFFITLGPDLKSLN-EHCVF 79 (96)
Q Consensus 1 ~~f~iQgGD~~~~g~gg~~~~~~~~~~~~~~~~~e~~~~l~h~~~G~lsma~~~~~~~~sqFfI~~~~~~~~ld-~~~vF 79 (96)
|+||||+||+.+.+.++.+.++ ..+++|....++|.++|+++|+++++++++|||||++.+ .|+|| +|+||
T Consensus 48 ~~~~iq~Gd~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~sqFfI~~~~-~~~ld~~~tvF 119 (155)
T d2fu0a1 48 KHFMVQTGDPSGDGTGGESIWG-------NEFEDEFFDHLNHSKPFMVSMANCGPNTNGSQFFITTVP-CPWLDFKHTVF 119 (155)
T ss_dssp TTTEEEECCTTSSSSCCCCTTS-------SCBCCCCBTTBCSSSSSEEEECCSSTTCBCSCEEEESSC-CGGGTTTSCEE
T ss_pred ecceeeccCCCCCCcCCcccCC-------CccccccccccccCCccEEEecccCCCCCCccceecccC-ccccccceEEE
Confidence 6899999999988888888887 568888888899999999999999999999999999996 89999 99999
Q ss_pred EEEEcCHHHHHHHHhh
Q psy15677 80 GEIAEGFDILLKLNNA 95 (96)
Q Consensus 80 G~Vi~G~dvl~~I~~~ 95 (96)
|||++|||||++|+++
T Consensus 120 G~Vi~G~~vv~~I~~~ 135 (155)
T d2fu0a1 120 GKVTQGSKIVLDIEKV 135 (155)
T ss_dssp EEEEECHHHHHHHHTS
T ss_pred EEEeccHHHHHHHHhC
Confidence 9999999999999875
>d2b71a1 b.62.1.1 (A:23-191) Cyclophilin-like protein PY00693 {Plasmodium yoelii [TaxId: 5861]}
Back Show information, alignment and structure
class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin-like protein PY00693
species: Plasmodium yoelii [TaxId: 5861]
Probab=99.95 E-value=1e-28 Score=164.06 Aligned_cols=87 Identities=38% Similarity=0.780 Sum_probs=78.7
Q ss_pred CCeEEEeCCCCCCCCCCCccccCccCCCCCcCCCCcCCCCCCCCCceEEEeecCCCCccceEEEEeCCCCCCCC-CceEE
Q psy15677 1 ANFIAQTGDPTGVGTGGSSVFGLAYGDHARYYEAETQPKIPHSKPGLVSMVHCGEGLLGSQFFITLGPDLKSLN-EHCVF 79 (96)
Q Consensus 1 ~~f~iQgGD~~~~g~gg~~~~~~~~~~~~~~~~~e~~~~l~h~~~G~lsma~~~~~~~~sqFfI~~~~~~~~ld-~~~vF 79 (96)
|+|++|+||+.+.+.++.+.+. ..+++|..+.++|.++|+|+|++++|++++|||||++++ .|+|| +|+||
T Consensus 63 ~~~~iq~g~~~~~~~~~~~~~~-------~~~~~e~~~~l~h~~~g~ls~~~~~p~s~~sqFfIt~~~-~~~ld~~~tvF 134 (169)
T d2b71a1 63 PNFVIQGGDPTGTGKGGKSIYG-------EYFEDEINKELKHTGAGILSMSNNGPNTNSSQFFITLAP-LPHLDGKHTIF 134 (169)
T ss_dssp TTTEEEEEETTSSSSCCCBTTB-------SCBCCCCCTTCCCCSTTEEEECCSSTTCBSSCEEEESSC-CGGGTTTSCEE
T ss_pred ceeeEeccccccccCCCccccc-------cccccccccccCCCCcEEEEhhhCCCCCCCCEEEEecCC-cchhhhhccee
Confidence 6899999999987777777666 467888777899999999999999999999999999996 79999 99999
Q ss_pred EEEEcCHHHHHHHHhh
Q psy15677 80 GEIAEGFDILLKLNNA 95 (96)
Q Consensus 80 G~Vi~G~dvl~~I~~~ 95 (96)
|||++|||||++|+++
T Consensus 135 G~Vv~G~dvl~~I~~~ 150 (169)
T d2b71a1 135 ARVSKNMTCIENIASV 150 (169)
T ss_dssp EEEEECHHHHHHHHTS
T ss_pred eEEeccHHHHHHHHhC
Confidence 9999999999999875
>d1qnga_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Plasmodium falciparum [TaxId: 5833]}
Back Show information, alignment and structure
class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Plasmodium falciparum [TaxId: 5833]
Probab=99.95 E-value=2.9e-28 Score=161.77 Aligned_cols=86 Identities=41% Similarity=0.782 Sum_probs=75.3
Q ss_pred CCeEEEeCCCC-CCCCCCCccccCccCCCCCcCCCCcCCCCCCCCCceEEEeecCCCCccceEEEEeCCCCCCCC-CceE
Q psy15677 1 ANFIAQTGDPT-GVGTGGSSVFGLAYGDHARYYEAETQPKIPHSKPGLVSMVHCGEGLLGSQFFITLGPDLKSLN-EHCV 78 (96)
Q Consensus 1 ~~f~iQgGD~~-~~g~gg~~~~~~~~~~~~~~~~~e~~~~l~h~~~G~lsma~~~~~~~~sqFfI~~~~~~~~ld-~~~v 78 (96)
|+|+||+||+. +++.++...++ ..++++.. .+.|+++|+||||++++++++|||||++.+ .|+|| +|+|
T Consensus 64 ~~~~iq~g~~~~~~~~~~~~~~~-------~~~~~~~~-~~~~~~~G~lsma~~~~~s~~sqFfIt~~~-~~~Ld~~~~v 134 (170)
T d1qnga_ 64 PQFMCQGGDITNGNGSGGESIYG-------RSFTDENF-NMKHDQPGLLSMANAGPNTNSSQFFITLVP-CPWLDGKHVV 134 (170)
T ss_dssp TTTEEEECCTTTSSSSCCCBTTB-------SCBCCCCC-CSCCCSTTEEEECCSSTTCBCSCEEEESSC-CGGGTTTSCE
T ss_pred eCceEEecCccCCCCCCCcccCC-------Cccccccc-cccCCCCeEEEEeecCCCCccccceeccCC-cccccccccE
Confidence 68999999987 66677767776 45666654 778988999999999999999999999996 79999 9999
Q ss_pred EEEEEcCHHHHHHHHhh
Q psy15677 79 FGEIAEGFDILLKLNNA 95 (96)
Q Consensus 79 FG~Vi~G~dvl~~I~~~ 95 (96)
||||++|||||++|+++
T Consensus 135 FG~Vv~Gmdvl~~I~~~ 151 (170)
T d1qnga_ 135 FGKVIEGMNVVREMEKE 151 (170)
T ss_dssp EEEEEECHHHHHHHHTT
T ss_pred EeEEeccHHHHHHHHhc
Confidence 99999999999999863
>d2cfea1 b.62.1.1 (A:1-162) Cyclophilin-like allergen Mal s 6 {Malassezia sympodialis [TaxId: 76777]}
Back Show information, alignment and structure
class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin-like allergen Mal s 6
species: Malassezia sympodialis [TaxId: 76777]
Probab=99.95 E-value=4.6e-28 Score=159.91 Aligned_cols=85 Identities=41% Similarity=0.747 Sum_probs=75.3
Q ss_pred CCeEEEeCCCC-CCCCCCCccccCccCCCCCcCCCCcCCCCCCCCCceEEEeecCCCCccceEEEEeCCCCCCCC-CceE
Q psy15677 1 ANFIAQTGDPT-GVGTGGSSVFGLAYGDHARYYEAETQPKIPHSKPGLVSMVHCGEGLLGSQFFITLGPDLKSLN-EHCV 78 (96)
Q Consensus 1 ~~f~iQgGD~~-~~g~gg~~~~~~~~~~~~~~~~~e~~~~l~h~~~G~lsma~~~~~~~~sqFfI~~~~~~~~ld-~~~v 78 (96)
|+|+||+||+. +++.++.+.+. ..+++|+. .++|+++|+|||++.++++++|||||++.+ .++|| +|+|
T Consensus 56 ~~~~iq~G~~~~~~~~~~~~~~~-------~~~~~e~~-~~~h~~~G~vsm~~~~~~s~~sqF~I~~~~-~~~ld~~~~v 126 (162)
T d2cfea1 56 PDFMLQGGDFTAGNGTGGKSIYG-------AKFADENF-QLKHNKPGLLSMANAGPNTNGSQFFITTVV-TSWLDGKHVV 126 (162)
T ss_dssp TTTEEEECCTTTSSSSCCCBTTB-------SCBCCCCC-CSCCCSTTEEEECCSSTTCBSSCEEEESSC-CGGGTTTSCE
T ss_pred ecceEecCCCCCCCCCCCcccCC-------CccccccC-CCCCCCceEEEEeecCCCCCCcceEEeecC-CccccccceE
Confidence 68999999987 66677777766 45777764 789999999999999999999999999996 89999 9999
Q ss_pred EEEEEcCHHHHHHHHh
Q psy15677 79 FGEIAEGFDILLKLNN 94 (96)
Q Consensus 79 FG~Vi~G~dvl~~I~~ 94 (96)
||||++|||||++|+.
T Consensus 127 FG~Vi~G~dvl~~I~~ 142 (162)
T d2cfea1 127 FGEVIDGMNVVKAIEA 142 (162)
T ss_dssp EEEEEECHHHHHHHHT
T ss_pred EEEEEehHHHHHHHhc
Confidence 9999999999999975
>d2r99a1 b.62.1.1 (A:139-299) Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F {Human (Homo sapiens) [TaxId: 9606]}
Back Show information, alignment and structure
class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F
species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.95 E-value=4.9e-28 Score=159.71 Aligned_cols=85 Identities=41% Similarity=0.755 Sum_probs=73.7
Q ss_pred CCeEEEeCCCC-CCCCCCCccccCccCCCCCcCCCCcCCCCCCCCCceEEEeecCCCCccceEEEEeCCCCCCCC-CceE
Q psy15677 1 ANFIAQTGDPT-GVGTGGSSVFGLAYGDHARYYEAETQPKIPHSKPGLVSMVHCGEGLLGSQFFITLGPDLKSLN-EHCV 78 (96)
Q Consensus 1 ~~f~iQgGD~~-~~g~gg~~~~~~~~~~~~~~~~~e~~~~l~h~~~G~lsma~~~~~~~~sqFfI~~~~~~~~ld-~~~v 78 (96)
|+|+||+||+. .++.++.+.++ ..++++. +.++|.++|+|+||+++|++++|||||++.+ .++|| +|+|
T Consensus 56 ~~~~iq~G~~~~~~~~~~~~~~~-------~~~~~~~-~~~~~~~~G~ls~~~~~~~s~~sqFfI~~~~-~~~Ldg~~tv 126 (161)
T d2r99a1 56 PQFMCQGGDFTNHNGTGGKSIYG-------KKFDDEN-FILKHTGPGLLSMANSGPNTNGSQFFLTCDK-TDWLDGKHVV 126 (161)
T ss_dssp TTTEEEECCTTTSSSSCCCBTTB-------SCBCCCC-CCSCCCSSSEEEECCSSTTCBCSCEEEESSC-CGGGTTTSCE
T ss_pred EeeeEEeeeccCCCCCCCccccC-------ccccccc-cccccccceeeeecccCCCCcCcceEeccCC-ccccCCcceE
Confidence 78999999998 45566677776 3344454 4788999999999999999999999999996 89999 9999
Q ss_pred EEEEEcCHHHHHHHHh
Q psy15677 79 FGEIAEGFDILLKLNN 94 (96)
Q Consensus 79 FG~Vi~G~dvl~~I~~ 94 (96)
||||++|||||++|+.
T Consensus 127 FG~Vv~G~dvl~~I~~ 142 (161)
T d2r99a1 127 FGEVTEGLDVLRQIEA 142 (161)
T ss_dssp EEEEEECHHHHHHHHT
T ss_pred EEEEeehHHHHHHHHc
Confidence 9999999999999975
>d2igva1 b.62.1.1 (A:1-172) Cyclophilin (eukaryotic) {Caenorhabditis elegans, isoform 3 [TaxId: 6239]}
Back Show information, alignment and structure
class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Caenorhabditis elegans, isoform 3 [TaxId: 6239]
Probab=99.95 E-value=5.2e-28 Score=160.86 Aligned_cols=85 Identities=40% Similarity=0.718 Sum_probs=76.1
Q ss_pred CCeEEEeCCCC-CCCCCCCccccCccCCCCCcCCCCcCCCCCCCCCceEEEeecCCCCccceEEEEeCCCCCCCC-CceE
Q psy15677 1 ANFIAQTGDPT-GVGTGGSSVFGLAYGDHARYYEAETQPKIPHSKPGLVSMVHCGEGLLGSQFFITLGPDLKSLN-EHCV 78 (96)
Q Consensus 1 ~~f~iQgGD~~-~~g~gg~~~~~~~~~~~~~~~~~e~~~~l~h~~~G~lsma~~~~~~~~sqFfI~~~~~~~~ld-~~~v 78 (96)
|+++||+||+. ++++++..+++ ..+++|.. .+.|..+|+||||+++|++++|||||++.+ .|+|| +|+|
T Consensus 65 ~~~~i~~G~~~~~~~~~~~~~~~-------~~~~~e~~-~~~~~~~G~lsma~~~~~~~~sqFfIt~~~-~~~ld~~~~v 135 (172)
T d2igva1 65 PNFMIQGGDFTRGNGTGGESIYG-------EKFPDENF-KEKHTGPGVLSMANAGPNTNGSQFFLCTVK-TEWLDGKHVV 135 (172)
T ss_dssp TTTEEEECCTTTSSSSCCCBTTB-------SCBCCCCC-CSCCCSTTEEEECCSSTTCBSSCEEEESSC-CGGGTTTSCE
T ss_pred ecceEEcCCccCCCCCCCcccCC-------CccCcccc-ccccCCCcEEEEeecCCCCcCceeEeeecC-CcccCCceeE
Confidence 68999999987 67888888777 46788875 667778999999999999999999999996 89999 9999
Q ss_pred EEEEEcCHHHHHHHHh
Q psy15677 79 FGEIAEGFDILLKLNN 94 (96)
Q Consensus 79 FG~Vi~G~dvl~~I~~ 94 (96)
||||++|||||++|++
T Consensus 136 FG~Vv~Gmdvl~~I~~ 151 (172)
T d2igva1 136 FGRVVEGLDVVKAVES 151 (172)
T ss_dssp EEEEEECHHHHHHHHT
T ss_pred EEEEeccHHHHHHHHc
Confidence 9999999999999976
>d2z6wa1 b.62.1.1 (A:2-165) Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F {Human (Homo sapiens) [TaxId: 9606]}
Back Show information, alignment and structure
class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F
species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.95 E-value=1.5e-27 Score=157.63 Aligned_cols=86 Identities=38% Similarity=0.678 Sum_probs=74.5
Q ss_pred CCeEEEeCCCC-CCCCCCCccccCccCCCCCcCCCCcCCCCCCCCCceEEEeecCCCCccceEEEEeCCCCCCCC-CceE
Q psy15677 1 ANFIAQTGDPT-GVGTGGSSVFGLAYGDHARYYEAETQPKIPHSKPGLVSMVHCGEGLLGSQFFITLGPDLKSLN-EHCV 78 (96)
Q Consensus 1 ~~f~iQgGD~~-~~g~gg~~~~~~~~~~~~~~~~~e~~~~l~h~~~G~lsma~~~~~~~~sqFfI~~~~~~~~ld-~~~v 78 (96)
|+|++|+||++ .++.++...++ ..++++.. .+.|.++|+||||++++++++|||||++.+ .++|| +|+|
T Consensus 57 ~~~~iq~g~~~~~~~~~~~~~~~-------~~~~~~~~-~~~~~~~G~lsma~~~~~s~~sqFfi~~~~-~~~ldg~ytV 127 (164)
T d2z6wa1 57 PSFMCQAGDFTNHNGTGGKSIYG-------SRFPDENF-TLKHVGPGVLSMANAGPNTNGSQFFICTIK-TDWLDGKHVV 127 (164)
T ss_dssp TTTEEEECCTTTSSSSCCCBTTB-------SCBCCCCC-CSCCCSTTEEEECCSSTTCBCSCEEEESSC-CGGGTTTSCE
T ss_pred ccceEecCCccCCCCCCCccccC-------CcCCcccc-ccccCCccEEEEecCCCCCCCcceeccccC-CCcccccceE
Confidence 68999999998 46677777777 34566654 677778999999999999999999999986 89999 9999
Q ss_pred EEEEEcCHHHHHHHHhh
Q psy15677 79 FGEIAEGFDILLKLNNA 95 (96)
Q Consensus 79 FG~Vi~G~dvl~~I~~~ 95 (96)
||||++|||||++|+++
T Consensus 128 FG~Vv~G~dvl~~I~~~ 144 (164)
T d2z6wa1 128 FGHVIEGMDVVKKIESF 144 (164)
T ss_dssp EEEEEECHHHHHHHHHT
T ss_pred EEEecccHHHHHHHHhC
Confidence 99999999999999874
>d1h0pa_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Caenorhabditis elegans, isoform 5 [TaxId: 6239]}
Back Show information, alignment and structure
class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Caenorhabditis elegans, isoform 5 [TaxId: 6239]
Probab=99.94 E-value=2.8e-27 Score=158.51 Aligned_cols=86 Identities=43% Similarity=0.706 Sum_probs=76.2
Q ss_pred CCeEEEeCCCC-CCCCCCCccccCccCCCCCcCCCCcCCCCCCCCCceEEEeecCCCCccceEEEEeCCCCCCCC-CceE
Q psy15677 1 ANFIAQTGDPT-GVGTGGSSVFGLAYGDHARYYEAETQPKIPHSKPGLVSMVHCGEGLLGSQFFITLGPDLKSLN-EHCV 78 (96)
Q Consensus 1 ~~f~iQgGD~~-~~g~gg~~~~~~~~~~~~~~~~~e~~~~l~h~~~G~lsma~~~~~~~~sqFfI~~~~~~~~ld-~~~v 78 (96)
|+|+||+||+. ++++++.+.++ ..++++.. ...|..+|+++||++++++++|||||++.+ .++|| +|+|
T Consensus 61 ~~~~iq~G~~~~~~~~g~~~~~~-------~~~~~~~~-~~~~~~~G~~~~a~~g~~s~~sqFfIt~~~-~~~ldg~ytv 131 (182)
T d1h0pa_ 61 ADFMIQGGDFTRGDGTGGRSIYG-------EKFADENF-KLKHYGAGWLSMANAGADTNGSQFFITTVK-TPWLDGRHVV 131 (182)
T ss_dssp TTTEEEECCTTTSSSSCCCBTTB-------SCBCCCCC-CSCCCSTTEEEECCSSTTCBCSCEEEESSC-CGGGTTTSCE
T ss_pred ecceEEcCCCCCCCCCCCCCCCC-------CccCcccc-cccccCCceeeecccCCCCcCccccccccc-ccccccccee
Confidence 68999999988 77888888887 45666654 667778999999999999999999999996 89999 9999
Q ss_pred EEEEEcCHHHHHHHHhh
Q psy15677 79 FGEIAEGFDILLKLNNA 95 (96)
Q Consensus 79 FG~Vi~G~dvl~~I~~~ 95 (96)
||||++|||||++|+++
T Consensus 132 FG~Vi~G~dvl~~I~~~ 148 (182)
T d1h0pa_ 132 FGKILEGMDVVRKIEQT 148 (182)
T ss_dssp EEEEEECHHHHHHHHTS
T ss_pred EEEEeehHHHHHHHHhc
Confidence 99999999999999875
>d2rmca_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Mouse (Mus musculus), variant C [TaxId: 10090]}
Back Show information, alignment and structure
class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Mouse (Mus musculus), variant C [TaxId: 10090]
Probab=99.94 E-value=4.2e-27 Score=157.74 Aligned_cols=86 Identities=38% Similarity=0.630 Sum_probs=75.4
Q ss_pred CCeEEEeCCCC-CCCCCCCccccCccCCCCCcCCCCcCCCCCCCCCceEEEeecCCCCccceEEEEeCCCCCCCC-CceE
Q psy15677 1 ANFIAQTGDPT-GVGTGGSSVFGLAYGDHARYYEAETQPKIPHSKPGLVSMVHCGEGLLGSQFFITLGPDLKSLN-EHCV 78 (96)
Q Consensus 1 ~~f~iQgGD~~-~~g~gg~~~~~~~~~~~~~~~~~e~~~~l~h~~~G~lsma~~~~~~~~sqFfI~~~~~~~~ld-~~~v 78 (96)
|+|++|+||+. .+++++.++++ ..+++++. .+.|.++|+||||++++++++|||||++.+ .++|| +|+|
T Consensus 62 ~~~~iq~G~~~~~~~~~~~~~~~-------~~~~~~~~-~~~~~~~G~lsma~~~~~s~~sqFfI~~~~-~~~ld~~~~v 132 (182)
T d2rmca_ 62 KDFMIQGGDFTARDGTGGMSIYG-------ETFPDENF-KLKHYGIGWVSMANAGPDTNGSQFFITLTK-PTWLDGKHVV 132 (182)
T ss_dssp TTTEEEECCCSSSSSSCCCBTTB-------SCBCCCCC-CSCCCSTTEEEECCSSTTCBCSCEEEESSC-CGGGTTTSCE
T ss_pred cCceEEcCCCCCCCCCCCCCCcC-------Cccccccc-ccccCCCccEehhhcCCCccCccccccccC-CchhcccceE
Confidence 68999999987 56777777777 45666764 667778999999999999999999999996 79999 9999
Q ss_pred EEEEEcCHHHHHHHHhh
Q psy15677 79 FGEIAEGFDILLKLNNA 95 (96)
Q Consensus 79 FG~Vi~G~dvl~~I~~~ 95 (96)
||||++|||||++|+++
T Consensus 133 FG~Vi~G~dvl~~I~~~ 149 (182)
T d2rmca_ 133 FGKVLDGMTVVHSIELQ 149 (182)
T ss_dssp EEEEEECHHHHHHHHTS
T ss_pred EEEEechHHHHHHHHhC
Confidence 99999999999999874
>d1xo7a_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Trypanosoma cruzi [TaxId: 5693]}
Back Show information, alignment and structure
class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Trypanosoma cruzi [TaxId: 5693]
Probab=99.94 E-value=4.8e-27 Score=155.28 Aligned_cols=85 Identities=44% Similarity=0.706 Sum_probs=71.8
Q ss_pred CCeEEEeCCCC-CCCCCCCccccCccCCCCCcCCCCcCCCCCCCCCceEEEeecCCCCccceEEEEeCCCCCCCC-CceE
Q psy15677 1 ANFIAQTGDPT-GVGTGGSSVFGLAYGDHARYYEAETQPKIPHSKPGLVSMVHCGEGLLGSQFFITLGPDLKSLN-EHCV 78 (96)
Q Consensus 1 ~~f~iQgGD~~-~~g~gg~~~~~~~~~~~~~~~~~e~~~~l~h~~~G~lsma~~~~~~~~sqFfI~~~~~~~~ld-~~~v 78 (96)
|++++|+||+. .+++++.+.++ ..++++.. .. |..+|+|+||+++|++++|||||++++ .++|| +|+|
T Consensus 60 ~~~~iq~G~~~~~~~~~~~~~~~-------~~~~~~~~-~~-~~~~G~l~~a~~g~~s~~sqFfIt~~~-~~~ld~~~~v 129 (166)
T d1xo7a_ 60 RNFMIQGGDFTNFDGTGGKSIYG-------TRFDDENL-KI-KHFVGAVSMANAGPNSNGSQFFVTTAP-TPWLDGRHVV 129 (166)
T ss_dssp TTTEEEECCTTTSSSSCCCBTTB-------SCBCCCCC-CS-CCCTTEEEECCSSTTCBCSCEEEESSC-CGGGTTTSCE
T ss_pred CCCEEEeCCCCCCCCCCCCCCCC-------cccccccc-cc-cccccceeecccCCCCCCCeeEEccCC-ccccCcccee
Confidence 68999999987 66777777666 34455543 44 445899999999999999999999997 79999 9999
Q ss_pred EEEEEcCHHHHHHHHhh
Q psy15677 79 FGEIAEGFDILLKLNNA 95 (96)
Q Consensus 79 FG~Vi~G~dvl~~I~~~ 95 (96)
||||++|||+|++|+++
T Consensus 130 fG~Vi~G~~vl~~I~~~ 146 (166)
T d1xo7a_ 130 FGKVVEGMDVVKKVENT 146 (166)
T ss_dssp EEEEEECHHHHHHHHTS
T ss_pred eeEEeeHHHHHHHHHcC
Confidence 99999999999999875
>d1qoia_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Human (Homo sapiens), U4/U6 snRNP-specific cyclophilin snucyp-20 [TaxId: 9606]}
Back Show information, alignment and structure
class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Human (Homo sapiens), U4/U6 snRNP-specific cyclophilin snucyp-20 [TaxId: 9606]
Probab=99.94 E-value=7.1e-27 Score=155.14 Aligned_cols=86 Identities=40% Similarity=0.667 Sum_probs=71.0
Q ss_pred CCeEEEeCCCC-CCCCCCCccccCccCCCCCcCCCCcCCCCCCCCCceEEEeecCCCCccceEEEEeCCCCCCCC-CceE
Q psy15677 1 ANFIAQTGDPT-GVGTGGSSVFGLAYGDHARYYEAETQPKIPHSKPGLVSMVHCGEGLLGSQFFITLGPDLKSLN-EHCV 78 (96)
Q Consensus 1 ~~f~iQgGD~~-~~g~gg~~~~~~~~~~~~~~~~~e~~~~l~h~~~G~lsma~~~~~~~~sqFfI~~~~~~~~ld-~~~v 78 (96)
|+|++|+||+. +.+......+. ..++++.. ...|.++|+|+||+++|++++|||||++.+ .|+|| +|+|
T Consensus 66 ~~~~~q~G~~~~~~~~~~~~~~~-------~~~~~~~~-~~~~~~~G~l~ma~~~~~s~~sqFfI~~~~-~~~ldg~~tv 136 (173)
T d1qoia_ 66 KDFMIQGGDFVNGDGTGVASIYR-------GPFADENF-KLRHSAPGLLSMANSGPSTNGCQFFITCSK-CDWLDGKHVV 136 (173)
T ss_dssp TTTEEEECCTTTSSSCCCCCTTS-------SCBCCCCC-CSCCCSTTEEEECCSSTTCBCSCEEEESSC-CGGGTTTSCE
T ss_pred cceeeccCCcccCCcceeecccC-------Cccccccc-ccccCCCcEEEeeecCCCCCCceeeeeccC-CccCCcceeE
Confidence 68999999987 44444444444 34566654 456667999999999999999999999986 89999 9999
Q ss_pred EEEEEcCHHHHHHHHhh
Q psy15677 79 FGEIAEGFDILLKLNNA 95 (96)
Q Consensus 79 FG~Vi~G~dvl~~I~~~ 95 (96)
||||++|||||++|+++
T Consensus 137 FG~Vi~G~dvl~~I~~~ 153 (173)
T d1qoia_ 137 FGKIIDGLLVMRKIENV 153 (173)
T ss_dssp EEEEEECHHHHHHHHTS
T ss_pred EEEEechHHHHHHHHhC
Confidence 99999999999999874
>d1ihga2 b.62.1.1 (A:2-196) Cyclophilin 40 isomerase domain {Cow (Bos taurus) [TaxId: 9913]}
Back Show information, alignment and structure
class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin 40 isomerase domain
species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.94 E-value=6.8e-27 Score=158.24 Aligned_cols=86 Identities=41% Similarity=0.696 Sum_probs=75.0
Q ss_pred CCeEEEeCCCC-CCCCCCCccccCccCCCCCcCCCCcCCCCCCCCCceEEEeecCCCCccceEEEEeCCCCCCCC-CceE
Q psy15677 1 ANFIAQTGDPT-GVGTGGSSVFGLAYGDHARYYEAETQPKIPHSKPGLVSMVHCGEGLLGSQFFITLGPDLKSLN-EHCV 78 (96)
Q Consensus 1 ~~f~iQgGD~~-~~g~gg~~~~~~~~~~~~~~~~~e~~~~l~h~~~G~lsma~~~~~~~~sqFfI~~~~~~~~ld-~~~v 78 (96)
|++++|+||+. ..+.++...++ ..+++|+. .++|+++|+|+|+++++++++|||||++++ .++|| +|+|
T Consensus 77 ~~~~i~~G~~~~~~~~~~~~~~~-------~~~~~~~~-~~~h~~~G~lsm~~~~~~s~~SqFfItl~~-~~~LDg~ytV 147 (195)
T d1ihga2 77 KKFMIQGGDFSNQNGTGGESIYG-------EKFEDENF-HYKHDKEGLLSMANAGSNTNGSQFFITTVP-TPHLDGKHVV 147 (195)
T ss_dssp TTTEEEECCTTTSSSSCCCBTTB-------SCBCCCCC-CBCCCSTTEEEECCSSTTCBCSCEEEESSC-CGGGTTTSCE
T ss_pred cCceeecCCccCCCCCCCccCCC-------Cccccccc-CcccCcceEEeeeecCCCCCCceeEeeccC-CcccCCcceE
Confidence 68999999987 45666666666 45677765 778999999999999999999999999996 89999 9999
Q ss_pred EEEEEcCHHHHHHHHhh
Q psy15677 79 FGEIAEGFDILLKLNNA 95 (96)
Q Consensus 79 FG~Vi~G~dvl~~I~~~ 95 (96)
||||++|||||++|+++
T Consensus 148 FG~Vv~Gmdvl~~I~~~ 164 (195)
T d1ihga2 148 FGQVIKGMGVAKILENV 164 (195)
T ss_dssp EEEEEECHHHHHHHHTS
T ss_pred EEEEecCHHHHHHHHcC
Confidence 99999999999999864
>d1a33a_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Nematode (Brugia malayi) [TaxId: 6279]}
Back Show information, alignment and structure
class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Nematode (Brugia malayi) [TaxId: 6279]
Probab=99.94 E-value=1.1e-26 Score=154.36 Aligned_cols=86 Identities=42% Similarity=0.697 Sum_probs=74.0
Q ss_pred CCeEEEeCCCC-CCCCCCCccccCccCCCCCcCCCCcCCCCCCCCCceEEEeecCCCCccceEEEEeCCCCCCCC-CceE
Q psy15677 1 ANFIAQTGDPT-GVGTGGSSVFGLAYGDHARYYEAETQPKIPHSKPGLVSMVHCGEGLLGSQFFITLGPDLKSLN-EHCV 78 (96)
Q Consensus 1 ~~f~iQgGD~~-~~g~gg~~~~~~~~~~~~~~~~~e~~~~l~h~~~G~lsma~~~~~~~~sqFfI~~~~~~~~ld-~~~v 78 (96)
|+|++|+||+. ++++++.+.+. ....++ ...++|+++|+|+|++.+|++++|||||++.+ .|+|| +|+|
T Consensus 66 ~~~~iq~g~~~~~~~~~~~~~~~-------~~~~~~-~~~~~~~~~g~l~~~~~~~~s~~sqFfI~~~~-~p~ld~~~~v 136 (174)
T d1a33a_ 66 KNFMIQGGDFTKGDGTGGESIYG-------GMFDDE-EFVMKHDEPFVVSMANKGPNTNGSQFFITTTP-APHLNNIHVV 136 (174)
T ss_dssp TTTEEEECCTTTSSSSCCCCTTS-------SCBCCC-CSCSCCCSTTEEEECCSSTTCBCSCEEEESSC-CGGGTTTSCE
T ss_pred eCCEEeeCCCCCCCCCCCCCccC-------cccccc-ccccccCcceeeeeeccCCCCCCcccccccCC-ccccccccee
Confidence 68999999997 66777777766 223333 45788999999999999999999999999996 89999 9999
Q ss_pred EEEEEcCHHHHHHHHhh
Q psy15677 79 FGEIAEGFDILLKLNNA 95 (96)
Q Consensus 79 FG~Vi~G~dvl~~I~~~ 95 (96)
||||++|||||++|+++
T Consensus 137 FG~VveG~dvl~~I~~~ 153 (174)
T d1a33a_ 137 FGKVVSGQEVVTKIEYL 153 (174)
T ss_dssp EEEEEECHHHHHHHHTS
T ss_pred EEEEechHHHHHHHHhC
Confidence 99999999999999875
>d1w74a_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA {Mycobacterium tuberculosis [TaxId: 1773]}
Back Show information, alignment and structure
class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase A, PpiA
species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.94 E-value=6.3e-27 Score=155.17 Aligned_cols=84 Identities=39% Similarity=0.731 Sum_probs=72.9
Q ss_pred CCeEEEeCCCCCCCCCCCccccCccCCCCCcCCCCcCCCCCCCCCceEEEeecCCCCccceEEEEeCCCCCCCC-CceEE
Q psy15677 1 ANFIAQTGDPTGVGTGGSSVFGLAYGDHARYYEAETQPKIPHSKPGLVSMVHCGEGLLGSQFFITLGPDLKSLN-EHCVF 79 (96)
Q Consensus 1 ~~f~iQgGD~~~~g~gg~~~~~~~~~~~~~~~~~e~~~~l~h~~~G~lsma~~~~~~~~sqFfI~~~~~~~~ld-~~~vF 79 (96)
|++++|+||+.+.+.++.. ..+++|..+.++|+++|+|+|++.+|++++|||||++.+ .|+|| +|+||
T Consensus 65 ~~~~iq~g~~~~~~~~~~~----------~~~~~e~~~~~~~~~~g~v~~~~~~~~s~~sqFfIt~~~-~p~ld~~~tVF 133 (171)
T d1w74a_ 65 QGFMIQGGDPTGTGRGGPG----------YKFADEFHPELQFDKPYLLAMANAGPGTNGSQFFITVGK-TPHLNRRHTIF 133 (171)
T ss_dssp TTTEEEECCTTSSSSCCSS----------CCBCCCCCTTCCSCSSSEEEECCSSTTCBSSCEEEESSC-CGGGTTTSCEE
T ss_pred CCceeEcccccCCCCCCcc----------cccccccCCCcCCCCCEEEEEEecCCCCCCcceEeeccC-CCccccccEEE
Confidence 6899999999876665433 235667667899999999999999999999999999996 79999 99999
Q ss_pred EEEE--cCHHHHHHHHhh
Q psy15677 80 GEIA--EGFDILLKLNNA 95 (96)
Q Consensus 80 G~Vi--~G~dvl~~I~~~ 95 (96)
|||+ ||||||++|+++
T Consensus 134 G~Vv~geGmdvl~~I~~~ 151 (171)
T d1w74a_ 134 GEVIDAESQRVVEAISKT 151 (171)
T ss_dssp EEECSHHHHHHHHHHHTS
T ss_pred EEEeccccHHHHHHHHcC
Confidence 9999 599999999875
>d2a2na1 b.62.1.1 (A:483-646) Peptidylprolyl isomerase domain and WD repeat-containing protein 1, PPWD1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Back Show information, alignment and structure
class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidylprolyl isomerase domain and WD repeat-containing protein 1, PPWD1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.93 E-value=2.1e-26 Score=151.60 Aligned_cols=87 Identities=40% Similarity=0.780 Sum_probs=73.9
Q ss_pred CCeEEEeCCCCCCCCCCCccccCccCCCCCcCCCCcCCCCCCCCCceEEEeecCCCCccceEEEEeCCCCCCCC-CceEE
Q psy15677 1 ANFIAQTGDPTGVGTGGSSVFGLAYGDHARYYEAETQPKIPHSKPGLVSMVHCGEGLLGSQFFITLGPDLKSLN-EHCVF 79 (96)
Q Consensus 1 ~~f~iQgGD~~~~g~gg~~~~~~~~~~~~~~~~~e~~~~l~h~~~G~lsma~~~~~~~~sqFfI~~~~~~~~ld-~~~vF 79 (96)
|+|++|+||+.+...++..... ..++++..+.++|+++|+|+|++.++++++|||||++++ .|+|| +|+||
T Consensus 56 ~~~~iq~G~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~l~~~~~~~~s~~sqFfI~~~~-~~~ld~~~tVF 127 (164)
T d2a2na1 56 KGFMIQTGDPTGTGMGGESIWG-------GEFEDEFHSTLRHDRPYTLSMANAGSNTNGSQFFITVVP-TPWLDNKHTVF 127 (164)
T ss_dssp TTTEEEECCTTSSSSCCCCTTS-------SCBCCCCCTTCCSCSSSEEEECCSSTTCBCSCEEEESSC-CGGGTTTSCEE
T ss_pred eeeeEeecccccccCCCceeee-------cccccccccccccCccceeehhhcCCCCCcccceecccC-ccccccceeEE
Confidence 6899999999865554433332 245666667899999999999999999999999999997 79999 99999
Q ss_pred EEEEcCHHHHHHHHhh
Q psy15677 80 GEIAEGFDILLKLNNA 95 (96)
Q Consensus 80 G~Vi~G~dvl~~I~~~ 95 (96)
|||++|||||++|+++
T Consensus 128 G~V~~G~dvv~~I~~~ 143 (164)
T d2a2na1 128 GRVTKGMEVVQRISNV 143 (164)
T ss_dssp EEEEECHHHHHHHHTS
T ss_pred EEecChHHHHHHHHcC
Confidence 9999999999999864
>d2c3ba1 b.62.1.1 (A:1-171) Cyclophilin (eukaryotic) {Aspergillus fumigatus [TaxId: 5085]}
Back Show information, alignment and structure
class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Aspergillus fumigatus [TaxId: 5085]
Probab=99.93 E-value=1.3e-27 Score=158.91 Aligned_cols=86 Identities=40% Similarity=0.689 Sum_probs=51.7
Q ss_pred CCeEEEeCCCC-CCCCCCCccccCccCCCCCcCCCCcCCCCCCCCCceEEEeecCCCCccceEEEEeCCCCCCCC-CceE
Q psy15677 1 ANFIAQTGDPT-GVGTGGSSVFGLAYGDHARYYEAETQPKIPHSKPGLVSMVHCGEGLLGSQFFITLGPDLKSLN-EHCV 78 (96)
Q Consensus 1 ~~f~iQgGD~~-~~g~gg~~~~~~~~~~~~~~~~~e~~~~l~h~~~G~lsma~~~~~~~~sqFfI~~~~~~~~ld-~~~v 78 (96)
|+|++|+||+. ++++++.+.++ ..+.++. +.++|+++|+||||+++|++++|||||++.+ .|+|| +|+|
T Consensus 61 ~~~~iq~G~~~~~~~~~~~~~~~-------~~~~~~~-~~~~~~~~G~lsma~~~~~s~~sqFfI~~~~-~~~ldg~~tv 131 (171)
T d2c3ba1 61 PNFMIQGGDFTRGNGTGGRSIYG-------DKFADEN-FSRKHDKKGILSMANAGPNTNGSQFFITTAV-TSWLDGKHVV 131 (171)
T ss_dssp TTTEEEECC------------------------------CHHHHHTCEEEEC---------CEEEECSC-CTTCCSCCEE
T ss_pred EEEeeEcCCccCCCCCCCCcCCC-------Ccccccc-ccccCCCCceEEeeecCCCCCCcceeeccCC-ccccCCCceE
Confidence 68999999987 66666666665 3345454 4778888999999999999999999999996 89999 9999
Q ss_pred EEEEEc--CHHHHHHHHhh
Q psy15677 79 FGEIAE--GFDILLKLNNA 95 (96)
Q Consensus 79 FG~Vi~--G~dvl~~I~~~ 95 (96)
||||++ |||||++|+++
T Consensus 132 FG~Vie~~G~dvl~~I~~~ 150 (171)
T d2c3ba1 132 FGEVADEKSYSVVKEIEAL 150 (171)
T ss_dssp EEEECSHHHHHHHHHHHTT
T ss_pred EEEEEeccCHHHHHHHHcC
Confidence 999995 99999999864
>d1z81a1 b.62.1.1 (A:25-210) Cyclophilin (eukaryotic) {Plasmodium yoelii [TaxId: 5861]}
Back Show information, alignment and structure
class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Plasmodium yoelii [TaxId: 5861]
Probab=99.93 E-value=4.5e-26 Score=153.10 Aligned_cols=86 Identities=36% Similarity=0.605 Sum_probs=73.3
Q ss_pred CCeEEEeCCCC-CCCCCCCccccCccCCCCCcCCCCcCCCCCCCCCceEEEeecCCCCccceEEEEeCCCCCCCC-CceE
Q psy15677 1 ANFIAQTGDPT-GVGTGGSSVFGLAYGDHARYYEAETQPKIPHSKPGLVSMVHCGEGLLGSQFFITLGPDLKSLN-EHCV 78 (96)
Q Consensus 1 ~~f~iQgGD~~-~~g~gg~~~~~~~~~~~~~~~~~e~~~~l~h~~~G~lsma~~~~~~~~sqFfI~~~~~~~~ld-~~~v 78 (96)
|+|++|+||+. ..+.+....++ ..++++.. .++|+++|+++|++.+|++++|||||++++ .|+|| +|+|
T Consensus 76 ~~~~i~~G~~~~~~~~~~~~~~~-------~~~~~~~~-~~~~~~~G~~~~~~~g~~~~~sqFfIt~~~-~p~Ldg~~tV 146 (186)
T d1z81a1 76 KEFMIQGGDFINHNGSGSLSIYG-------EKFDDENF-DIKHDKEGLLSMANSGPNTNGCQFFITTKK-CEWLDGKNVV 146 (186)
T ss_dssp TTTEEEECCTTTSSSCCCCBTTB-------SCCCCCCC-CSCCCSTTEEEECCSSSSCCCSCEEEESSC-CGGGBTTBCE
T ss_pred cceeeecCCccccCCcccccccC-------Cccccccc-ccccCCCccchhhhcCCCccccceeeeccc-ccccCCCccE
Confidence 68999999987 44555556666 44666654 778989999999999999999999999996 89999 9999
Q ss_pred EEEEEcC--HHHHHHHHhh
Q psy15677 79 FGEIAEG--FDILLKLNNA 95 (96)
Q Consensus 79 FG~Vi~G--~dvl~~I~~~ 95 (96)
||||++| ||||++|+++
T Consensus 147 FG~Vv~G~~mdvv~kI~~~ 165 (186)
T d1z81a1 147 FGRIIDNDSLLLLKKIENV 165 (186)
T ss_dssp EEEECSHHHHHHHHHHHHS
T ss_pred EEEEEeCccHHHHHHHhcc
Confidence 9999998 9999999864
>d1v9ta_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA {Escherichia coli [TaxId: 562]}
Back Show information, alignment and structure
class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase A, PpiA
species: Escherichia coli [TaxId: 562]
Probab=99.91 E-value=6e-25 Score=145.10 Aligned_cols=84 Identities=23% Similarity=0.329 Sum_probs=67.8
Q ss_pred CCeEEEeCCCCCCCCCCCccccCccCCCCCcCCCCcCCCCCCCCCceEEEeecC-CCCccceEEEEeCCCCCCCC-C---
Q psy15677 1 ANFIAQTGDPTGVGTGGSSVFGLAYGDHARYYEAETQPKIPHSKPGLVSMVHCG-EGLLGSQFFITLGPDLKSLN-E--- 75 (96)
Q Consensus 1 ~~f~iQgGD~~~~g~gg~~~~~~~~~~~~~~~~~e~~~~l~h~~~G~lsma~~~-~~~~~sqFfI~~~~~~~~ld-~--- 75 (96)
|+|++|+||+...... ..++ ..+++|..+.++|. +|.|+|+++. +++++|||||++.+ .++|| .
T Consensus 51 ~~~~iq~G~~~~~~~~--~~~~-------~~~~~e~~~~~~~~-rg~v~~~~~~~~~s~~sqFfI~~~~-~~~ld~~~~~ 119 (166)
T d1v9ta_ 51 PGFMIQGGGFTEQMQQ--KKPN-------PPIKNEADNGLRNT-RGTIAMARTADKDSATSQFFINVAD-NAFLDHGQRD 119 (166)
T ss_dssp TTTEEEESSBCTTCCB--CCCC-------CCBCCCGGGSCCCC-TTEEEECCCSSTTCBCSCEEEESSC-CGGGSCCSSC
T ss_pred EEeecccCCcCCcccc--cCCC-------CCcccccccccccc-CCEEEEEeeecCCCcccccccccCC-cccccccccc
Confidence 6899999998732221 2233 45788877778786 8999999855 99999999999996 68887 4
Q ss_pred --ceEEEEEEcCHHHHHHHHhh
Q psy15677 76 --HCVFGEIAEGFDILLKLNNA 95 (96)
Q Consensus 76 --~~vFG~Vi~G~dvl~~I~~~ 95 (96)
|+|||+|++|||||++|+++
T Consensus 120 ~~~tvfG~VveG~dvl~~I~~~ 141 (166)
T d1v9ta_ 120 FGYAVFGKVVKGMDVADKISQV 141 (166)
T ss_dssp CCCCEEEEEEECHHHHHHHHTS
T ss_pred CCEEEeeEEeccHHHHHHHHhC
Confidence 79999999999999999875
>d1lopa_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA {Escherichia coli [TaxId: 562]}
Back Show information, alignment and structure
class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase A, PpiA
species: Escherichia coli [TaxId: 562]
Probab=99.91 E-value=1.1e-24 Score=143.65 Aligned_cols=85 Identities=20% Similarity=0.286 Sum_probs=67.9
Q ss_pred CCeEEEeCCCCCCCCCCCccccCccCCCCCcCCCCcCCCCCCCCCceEEEeec-CCCCccceEEEEeCCC-------CCC
Q psy15677 1 ANFIAQTGDPTGVGTGGSSVFGLAYGDHARYYEAETQPKIPHSKPGLVSMVHC-GEGLLGSQFFITLGPD-------LKS 72 (96)
Q Consensus 1 ~~f~iQgGD~~~~g~gg~~~~~~~~~~~~~~~~~e~~~~l~h~~~G~lsma~~-~~~~~~sqFfI~~~~~-------~~~ 72 (96)
|+|++|+||+.....+ ..++ ..+++|....++|. +|.|+|+++ +|++++|||||++.+. .|+
T Consensus 46 ~~~~iq~G~~~~~~~~--~~~~-------~~~~~e~~~~~~h~-~g~l~~~~~~~~~~~~sqFfi~~~~~~~~~~~~~~~ 115 (164)
T d1lopa_ 46 NGFMIQGGGFEPGMKQ--KATK-------EPIKNEANNGLKNT-RGTLAMARTQAPHSATAQFFINVVDNDFLNFSGESL 115 (164)
T ss_dssp TTTEEEESSEETTTEE--CCCC-------CCBCCCCCSSCCCC-TTEEEECCCSSTTCBCSCEEEESSCCGGGSCCSSST
T ss_pred CCceeeeeccccCCcC--CccC-------CCccccccccccce-eeEEEEeccCCCCCccceeeeeccccccccccCCCc
Confidence 6899999998632222 1223 45778876788887 799999976 5999999999999852 378
Q ss_pred CC-CceEEEEEEcCHHHHHHHHhh
Q psy15677 73 LN-EHCVFGEIAEGFDILLKLNNA 95 (96)
Q Consensus 73 ld-~~~vFG~Vi~G~dvl~~I~~~ 95 (96)
|| +|+|||||++|||||++|+++
T Consensus 116 ~~~~ytvFG~Vv~G~dvl~~I~~~ 139 (164)
T d1lopa_ 116 QGWGYCVFAEVVDGMDEVDKIKGV 139 (164)
T ss_dssp TTSCCCEEEEEEECHHHHHHHHTS
T ss_pred CCCceeecCEEeccHHHHHHHHhC
Confidence 89 999999999999999999874
