Psyllid ID: psy15690

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230------
Protein Sequence
MSITLTKYTLDMEAEQKNLTFQEKHAERLKRLKEIHLKRNESRQLNHQEVVEEDRRKQLPNNWEARKRKAEWILKDEEQRQKALEEGEDYERVKMLNMTVAEAEKFNKKKKNPDVGFSDYQQATARQYNRLVKQMKPDMSKYEEQKKKLGPAFYGDQKTILQGLHSDRPEAVDKMVEDLEKQISKREKYSRRRTHNDDADIDYINERNMKFNKKLERFYGEHTAEIKQNLERGTAI
Secondary Structure (PSIPRED)
ccccccccccccHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
cccEccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHcHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHccHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccc
Coil and Loop (DISEMBL)
MSITLTKYTLDMEAEQKNLTFQEKHAERLKRLKEIHLKRNESRQLNHQEVVEEDRRKQLPNNWEARKRKAEWILKDEEQRQKALEEGEDYERVKMLNMTVAEAEKFnkkkknpdvgfsdyQQATARQYNRLVKQMKPDMSKYEEQKkklgpafygdqktilqglhsdrpeAVDKMVEDLEKQISKREKYsrrrthnddadidYINERNMKFNKKLERFYGEHTAEIKQNLERGTAI
Flexible Loop (DISEMBL)
msitltkytldmeaeqknltfqekHAERLKRLKeihlkrnesrqlnhqevveedrrkqlpnnweaRKRKAEWILKDEEQRQkaleegedyerVKMLNMTVAEAekfnkkkknpdvgfsdyqqATARQYNRLVKQMKPDMSKYEEQKKKLGPAFYGDQKTILQGLHSDRPEAVDKMVEDLEKQiskrekysrrrthnddadidyineRNMKFNKKLERfygehtaeikqnlergtai
Low Complexity Region (SEG)
MSITLTKYTLDMEAEQKNLTFQEKHAERLKRLKEIHLKRNESRQLNHQEVVEEDRRKQLPNNWEARKRKAEWILKDEEQRQKALEEGEDYERVKMLNMTVaeaekfnkkkknPDVGFSDYQQATARQYNRLVKQMKPDMSKYEEQKKKLGPAFYGDQKTILQGLHSDRPEAVDKMVEDLEKQISKREKYSRRRTHNDDADIDYINERNMKFNKKLERFYGEHTAEIKQNLERGTAI
Disordered region (IsUnstruct)
**********************************************************************************************************************************************************************************************************YIN*****FN*KLERFY*****************
Disordered Region (DISOPRED)
*********************************************************************************************KMLNMTVA**************GFSDYQQATARQYNRLVKQM******************************SDRPEAVDKMVE**********************DIDYINERNMKFNKKLERFYGEHTAEIKQNLERGT**
Disordered Region (DISEMBL)
MSITLTKYTLDMEAEQKNLTFQEKHAERLKRLKEIHLKRNESRQLNHQEVVEEDRRKQLPNNWEARKRKAEWILKDEEQRQKALEEGEDYERVKMLNMTVAEAEKFNKKKKNPDVGFSDYQQATARQYNRLVKQMKPDMSKYEEQKKKLGPAFYGDQKTILQGLHSDRPEAVDKMVEDLEKQISKREKYSRRRTHNDDADIDYINERNMKFNKKLERFYGEHTAEIKQNLERGTAI
Disordered Region (DISPRO)
**************************ERLKRLKEIHLKRNESRQLNHQEVVEEDRRKQLPNNWEARKRKAEWILKDEEQRQKALEEGEDYERVKMLNMTVAEAEKFNKKKKNPDVGFSDYQQATARQYNRLVKQMKPDMSKYEEQKKKLGPAFYGDQKTILQGLHSDRPEAVDKMVEDLEKQISKREKYSRRRTHNDDADIDYINERNMKFNKKLERFYGEHTAEIKQNLERGT**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSITLTKYTLDxxxxxxxxxxxxxxxxxxxxxKEIHLKRNESRQLNHQEVVEEDRRKQLPNNWEARKRKAEWILKDEEQRQKALEEGEDYERVKMLNMTVAEAEKFNKKKKNPDVGFSDYQQATARQYNRLVKQMKPDMSKYEEQKKKLGPAFYGDQKTILQGLHSDRPEAVDKMVEDLEKQISKREKYSRRRTHNDDADIDYINERNMKFNKKLERFYGEHTAEIKQNLERGTAI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	236	2.2.26 [Sep-21-2011]
Q9V5Q4	226	Pre-mRNA-splicing factor	yes	N/A	0.936	0.977	0.617	1e-72
Q28XK6	226	Pre-mRNA-splicing factor	yes	N/A	0.919	0.960	0.619	1e-70
Q6DV01	249	Pre-mRNA-splicing factor	N/A	N/A	0.987	0.935	0.581	3e-69
Q8AVQ6	240	Pre-mRNA-splicing factor	N/A	N/A	0.940	0.925	0.586	4e-68
Q6DGP2	238	Pre-mRNA-splicing factor	yes	N/A	0.906	0.899	0.569	5e-68
Q4QRB2	242	Pre-mRNA-splicing factor	yes	N/A	0.944	0.921	0.589	1e-67
Q9D198	242	Pre-mRNA-splicing factor	yes	N/A	0.944	0.921	0.589	1e-67
Q28G05	249	Pre-mRNA-splicing factor	yes	N/A	0.940	0.891	0.591	3e-67
O95926	243	Pre-mRNA-splicing factor	yes	N/A	0.906	0.880	0.597	1e-65
Q612R3	233	Pre-mRNA-splicing factor	N/A	N/A	0.877	0.888	0.454	1e-41

>sp|Q9V5Q4|SYF2_DROME Pre-mRNA-splicing factor Syf2 OS=Drosophila melanogaster GN=Syf2 PE=2 SV=1

 Score =  273 bits (697), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 139/225 (61%), Positives = 170/225 (75%), Gaps = 4/225 (1%)

Query: 16  QKNLTFQEKHAERLKRLKEIHLKRNESRQLNHQEVVEEDRRKQLPNNWEARKRKAEWILK 75
           +K  T  EK AER  RL ++H KR E+R  NHQEVV ED RK+LP NWEARKR+AEWIL 
Sbjct: 2   EKTKTAAEKLAERKARLLDLHKKRQEARTDNHQEVVAEDARKKLPKNWEARKRQAEWILA 61

Query: 76  DEEQRQKALEEGEDYERVKMLNMTVAEAEKFNKKKK---NPDVGFSDYQQATARQYNRLV 132
           D++ R +A   G+DYER+K+L ++  +A++  KKKK   NPD+GFS Y+  TARQYNRLV
Sbjct: 62  DDKARAEAQAAGKDYERLKLLEVSAVDADRIEKKKKRKDNPDLGFSTYEAQTARQYNRLV 121

Query: 133 KQMKP-DMSKYEEQKKKLGPAFYGDQKTILQGLHSDRPEAVDKMVEDLEKQISKREKYSR 191
           K M   D+ KYE QK++LG AFYG   T L     D P A++KMV DLE+QI +R+KYSR
Sbjct: 122 KSMPARDLEKYERQKEELGDAFYGGAHTTLHSRTKDTPGAINKMVTDLEQQIERRKKYSR 181

Query: 192 RRTHNDDADIDYINERNMKFNKKLERFYGEHTAEIKQNLERGTAI 236
           RR +NDDAD+D+INERN KFNKKL+RFY EHTAEIKQNLERGTAI
Sbjct: 182 RRIYNDDADVDFINERNSKFNKKLDRFYSEHTAEIKQNLERGTAI 226

May be involved in pre-mRNA splicing.
Drosophila melanogaster (taxid: 7227)

>sp|Q28XK6|SYF2_DROPS Pre-mRNA-splicing factor Syf2 OS=Drosophila pseudoobscura pseudoobscura GN=Syf2 PE=3 SV=1

 Score =  266 bits (679), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 137/221 (61%), Positives = 170/221 (76%), Gaps = 4/221 (1%)

Query: 20  TFQEKHAERLKRLKEIHLKRNESRQLNHQEVVEEDRRKQLPNNWEARKRKAEWILKDEEQ 79
           +  +K AER  RL ++H KR E+R  NHQEVV ED RK+LP NWEARKR+AEW+L D++ 
Sbjct: 6   SASDKLAERKARLLDLHKKRQEARTDNHQEVVAEDARKKLPKNWEARKRQAEWLLADDKA 65

Query: 80  RQKALEEGEDYERVKMLNMTVAEAEKFNKKKK---NPDVGFSDYQQATARQYNRLVKQMK 136
           R+ A   G+DYER+K+L ++  +AE+  KKKK   NPD+GFS Y+  TARQY+RLVK M 
Sbjct: 66  REDAQAAGKDYERLKLLEVSAIDAERIEKKKKRKDNPDLGFSTYEAQTARQYSRLVKGMP 125

Query: 137 P-DMSKYEEQKKKLGPAFYGDQKTILQGLHSDRPEAVDKMVEDLEKQISKREKYSRRRTH 195
             DM KYE+QK +LG AFYG   T L  L  D P A++KMV DL++QI +R+KYSRRR +
Sbjct: 126 ARDMEKYEKQKAELGEAFYGGPHTTLHALTKDTPAAINKMVNDLDQQIERRKKYSRRRIY 185

Query: 196 NDDADIDYINERNMKFNKKLERFYGEHTAEIKQNLERGTAI 236
           NDDAD+D+INERN KFNKKL+RFYGEHTAEIKQNLERGTAI
Sbjct: 186 NDDADVDFINERNSKFNKKLDRFYGEHTAEIKQNLERGTAI 226

May be involved in pre-mRNA splicing.

Drosophila pseudoobscura pseudoobscura (taxid: 46245)

>sp|Q6DV01|SYF2_GECJA Pre-mRNA-splicing factor syf2 OS=Gecko japonicus GN=syf2 PE=2 SV=1

 Score =  261 bits (667), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 139/239 (58%), Positives = 182/239 (76%), Gaps = 6/239 (2%)

Query: 1   MSIT-LTKYTLDMEAEQKNLTFQEKHAERLKRLKEIHLKRNESRQLNHQEVVEEDRRKQL 59
           M+IT +++    + AE    T  +K  E L++ +E+HLKRNE+R+LNHQEVVEED+R +L
Sbjct: 14  MAITGISEDPASIAAED---TAAQKREEHLRKFRELHLKRNEARKLNHQEVVEEDKRLKL 70

Query: 60  PNNWEARKRKAEWILKDEEQRQKALEEGEDYERVKMLNMTVAEAEKF--NKKKKNPDVGF 117
           P NWEA+K + EW LK EE++++ + +GEDYERVK+L ++  +AE+F   +KK+NPD+GF
Sbjct: 71  PANWEAKKSRLEWELKVEEKKKECVAKGEDYERVKLLEISAEDAERFERKRKKRNPDLGF 130

Query: 118 SDYQQATARQYNRLVKQMKPDMSKYEEQKKKLGPAFYGDQKTILQGLHSDRPEAVDKMVE 177
           SDY  A  RQY RL +Q+KPD+ KY + +++ G  FY    ++L G H    E VDKMVE
Sbjct: 131 SDYAAAQMRQYQRLTRQIKPDLEKYAKLREESGEEFYPTSNSLLHGTHVPCKEGVDKMVE 190

Query: 178 DLEKQISKREKYSRRRTHNDDADIDYINERNMKFNKKLERFYGEHTAEIKQNLERGTAI 236
           DLEKQI KREKYSRRR +NDDADIDYINERN KFNKK ERFYG++TAEIKQNLERGTA+
Sbjct: 191 DLEKQIQKREKYSRRRPYNDDADIDYINERNAKFNKKAERFYGKYTAEIKQNLERGTAV 249

May be involved in pre-mRNA splicing.

Gecko japonicus (taxid: 146911)

>sp|Q8AVQ6|SYF2_XENLA Pre-mRNA-splicing factor syf2 OS=Xenopus laevis GN=syf2 PE=2 SV=1

 Score =  257 bits (657), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 132/225 (58%), Positives = 173/225 (76%), Gaps = 3/225 (1%)

Query: 14  AEQKNLTFQEKHAERLKRLKEIHLKRNESRQLNHQEVVEEDRRKQLPNNWEARKRKAEWI 73
           A  ++L  Q++ A RL++ +E+HLK NE+R+LNHQEVVEED+R++LP+NWEARK + EW 
Sbjct: 17  ASAEDLAAQKREA-RLRKFRELHLKTNEARKLNHQEVVEEDKRQKLPSNWEARKARLEWE 75

Query: 74  LKDEEQRQKALEEGEDYERVKMLNMTVAEAEKF--NKKKKNPDVGFSDYQQATARQYNRL 131
           LK+EE++++    G D+ER K+L ++  +AE++   KK+KNPD+GFSDY  A  RQY RL
Sbjct: 76  LKNEEKKRECAANGVDFERAKLLEISAEDAERWERKKKRKNPDLGFSDYAAAQLRQYQRL 135

Query: 132 VKQMKPDMSKYEEQKKKLGPAFYGDQKTILQGLHSDRPEAVDKMVEDLEKQISKREKYSR 191
            KQ+KPDM +YE +K+K G  FY    ++  G H      +D+MV DLEKQI KREKYSR
Sbjct: 136 TKQIKPDMEEYEMEKEKQGELFYPTSDSLYHGTHVPSQSGIDRMVTDLEKQIEKREKYSR 195

Query: 192 RRTHNDDADIDYINERNMKFNKKLERFYGEHTAEIKQNLERGTAI 236
           RR +NDDADIDYINERN KFNKK ERFYG++TAEIKQNLERGTA+
Sbjct: 196 RRAYNDDADIDYINERNAKFNKKAERFYGKYTAEIKQNLERGTAV 240

May be involved in pre-mRNA splicing.

Xenopus laevis (taxid: 8355)

>sp|Q6DGP2|SYF2_DANRE Pre-mRNA-splicing factor syf2 OS=Danio rerio GN=syf2 PE=2 SV=1

 Score =  257 bits (656), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 123/216 (56%), Positives = 170/216 (78%), Gaps = 2/216 (0%)

Query: 23  EKHAERLKRLKEIHLKRNESRQLNHQEVVEEDRRKQLPNNWEARKRKAEWILKDEEQRQK 82
           +K  ERL++ +E+H KRNE+R+LNHQEVVEED+R +LP+NWEA+K + E+ L  ++++++
Sbjct: 23  QKREERLRKFRELHFKRNEARKLNHQEVVEEDKRLKLPSNWEAKKARLEYELLVDQKKKE 82

Query: 83  ALEEGEDYERVKMLNMTVAEAEKF--NKKKKNPDVGFSDYQQATARQYNRLVKQMKPDMS 140
             E GEDY+RVK+L ++  +AE++   KKK+NPD GFS Y +A  RQY RL KQ+KPDM 
Sbjct: 83  CAERGEDYDRVKLLEISAEDAERWERKKKKRNPDPGFSGYAEAQLRQYQRLTKQIKPDME 142

Query: 141 KYEEQKKKLGPAFYGDQKTILQGLHSDRPEAVDKMVEDLEKQISKREKYSRRRTHNDDAD 200
            YE+QK++ G  F+    +++ G H    +++++MV+D+EKQI KR KYSRRR +NDDAD
Sbjct: 143 NYEKQKEECGEDFHPTSNSLIYGTHVPSKDSINRMVDDVEKQIEKRAKYSRRRAYNDDAD 202

Query: 201 IDYINERNMKFNKKLERFYGEHTAEIKQNLERGTAI 236
           IDYINERN KFNKK ERFYG++TAEIKQNLERGTA+
Sbjct: 203 IDYINERNAKFNKKAERFYGKYTAEIKQNLERGTAV 238

May be involved in pre-mRNA splicing.

Danio rerio (taxid: 7955)

>sp|Q4QRB2|SYF2_RAT Pre-mRNA-splicing factor SYF2 OS=Rattus norvegicus GN=Syf2 PE=2 SV=1

 Score =  256 bits (653), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 135/229 (58%), Positives = 176/229 (76%), Gaps = 6/229 (2%)

Query: 14  AEQKNLTFQE----KHAERLKRLKEIHLKRNESRQLNHQEVVEEDRRKQLPNNWEARKRK 69
           AE + L  +E    K  +RL++ +E+HLKRNE+R+LNHQEVVEED+R +LP NWEA+K +
Sbjct: 14  AEARPLAAEELAAQKREQRLRKFRELHLKRNEARKLNHQEVVEEDKRLKLPANWEAKKAR 73

Query: 70  AEWILKDEEQRQKALEEGEDYERVKMLNMTVAEAEKF--NKKKKNPDVGFSDYQQATARQ 127
            EW L++EE++++    GEDYE+VK+L ++  +AE++   KKKKNPD+GFSDY  A  RQ
Sbjct: 74  LEWELQEEEKKKECAARGEDYEKVKLLEISAEDAERWERRKKKKNPDLGFSDYAAAQLRQ 133

Query: 128 YNRLVKQMKPDMSKYEEQKKKLGPAFYGDQKTILQGLHSDRPEAVDKMVEDLEKQISKRE 187
           Y+RL KQ+KPDM  YE Q++K G  F+    ++L G H    E +D+MV DLEKQI KR+
Sbjct: 134 YHRLTKQIKPDMESYERQREKHGEDFFPTSNSLLHGTHVPSSEEIDRMVLDLEKQIEKRD 193

Query: 188 KYSRRRTHNDDADIDYINERNMKFNKKLERFYGEHTAEIKQNLERGTAI 236
           KYSRRR +NDDADIDYINERN KFNKK ERFYG++TAEIKQNLERGTA+
Sbjct: 194 KYSRRRPYNDDADIDYINERNAKFNKKAERFYGKYTAEIKQNLERGTAV 242

May be involved in pre-mRNA splicing.

Rattus norvegicus (taxid: 10116)

>sp|Q9D198|SYF2_MOUSE Pre-mRNA-splicing factor SYF2 OS=Mus musculus GN=Syf2 PE=2 SV=1

 Score =  256 bits (653), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 135/229 (58%), Positives = 176/229 (76%), Gaps = 6/229 (2%)

Query: 14  AEQKNLTFQE----KHAERLKRLKEIHLKRNESRQLNHQEVVEEDRRKQLPNNWEARKRK 69
           AE + L  +E    K  +RL++ +E+HLKRNE+R+LNHQEVVEED+R +LP NWEA+K +
Sbjct: 14  AEARPLAAEELAAQKREQRLRKFRELHLKRNEARKLNHQEVVEEDKRLKLPANWEAKKAR 73

Query: 70  AEWILKDEEQRQKALEEGEDYERVKMLNMTVAEAEKF--NKKKKNPDVGFSDYQQATARQ 127
            EW L++EE++++    GEDYE+VK+L ++  +AE++   KKKKNPD+GFSDY  A  RQ
Sbjct: 74  LEWELQEEEKKKECAARGEDYEKVKLLEISAEDAERWERRKKKKNPDLGFSDYAAAQLRQ 133

Query: 128 YNRLVKQMKPDMSKYEEQKKKLGPAFYGDQKTILQGLHSDRPEAVDKMVEDLEKQISKRE 187
           Y+RL KQ+KPDM  YE Q++K G  F+    ++L G H    E +D+MV DLEKQI KR+
Sbjct: 134 YHRLTKQIKPDMESYERQREKHGEDFFPTSNSLLHGTHVPSSEEIDRMVLDLEKQIEKRD 193

Query: 188 KYSRRRTHNDDADIDYINERNMKFNKKLERFYGEHTAEIKQNLERGTAI 236
           KYSRRR +NDDADIDYINERN KFNKK ERFYG++TAEIKQNLERGTA+
Sbjct: 194 KYSRRRPYNDDADIDYINERNAKFNKKAERFYGKYTAEIKQNLERGTAV 242

May be involved in pre-mRNA splicing.

Mus musculus (taxid: 10090)

>sp|Q28G05|SYF2_XENTR Pre-mRNA-splicing factor syf2 OS=Xenopus tropicalis GN=syf2 PE=2 SV=1

 Score =  254 bits (650), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 133/225 (59%), Positives = 174/225 (77%), Gaps = 3/225 (1%)

Query: 14  AEQKNLTFQEKHAERLKRLKEIHLKRNESRQLNHQEVVEEDRRKQLPNNWEARKRKAEWI 73
           A  ++L  Q++ A RL++ +E+HLK NE+R+LNHQEVVEED+R++LP+NWEARK + EW 
Sbjct: 26  ASTEDLAAQKREA-RLRKFRELHLKTNEARKLNHQEVVEEDKRQKLPSNWEARKARLEWE 84

Query: 74  LKDEEQRQKALEEGEDYERVKMLNMTVAEAEKF--NKKKKNPDVGFSDYQQATARQYNRL 131
           LK+EE++++    G DYER K+L ++  +AE++   KK+KNPD+GFSDY  A  RQY RL
Sbjct: 85  LKEEEKKRECAANGVDYERAKLLEISAEDAERWERKKKRKNPDLGFSDYAAAQLRQYQRL 144

Query: 132 VKQMKPDMSKYEEQKKKLGPAFYGDQKTILQGLHSDRPEAVDKMVEDLEKQISKREKYSR 191
            KQ+KPDM +YE +K+K G  FY   +++  G H      +D+MV DLEKQI KREKYSR
Sbjct: 145 TKQIKPDMEEYEMEKQKQGEMFYPTSESLYHGTHIPSQSGIDRMVTDLEKQIEKREKYSR 204

Query: 192 RRTHNDDADIDYINERNMKFNKKLERFYGEHTAEIKQNLERGTAI 236
           RR +NDDADIDYINERN KFNKK ERFYG++TAEIKQNLERGTA+
Sbjct: 205 RRAYNDDADIDYINERNAKFNKKAERFYGKYTAEIKQNLERGTAV 249

May be involved in pre-mRNA splicing.

Xenopus tropicalis (taxid: 8364)

>sp|O95926|SYF2_HUMAN Pre-mRNA-splicing factor SYF2 OS=Homo sapiens GN=SYF2 PE=1 SV=1

 Score =  249 bits (636), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 129/216 (59%), Positives = 169/216 (78%), Gaps = 2/216 (0%)

Query: 23  EKHAERLKRLKEIHLKRNESRQLNHQEVVEEDRRKQLPNNWEARKRKAEWILKDEEQRQK 82
           +K  +RL++ +E+HL RNE+R+LNHQEVVEED+R +LP NWEA+K + EW LK+EE++++
Sbjct: 28  QKREQRLRKFRELHLMRNEARKLNHQEVVEEDKRLKLPANWEAKKARLEWELKEEEKKKE 87

Query: 83  ALEEGEDYERVKMLNMTVAEAEKF--NKKKKNPDVGFSDYQQATARQYNRLVKQMKPDMS 140
               GEDYE+VK+L ++  +AE++   KK+KNPD+GFSDY  A  RQY+RL KQ+KPDM 
Sbjct: 88  CAARGEDYEKVKLLEISAEDAERWERKKKRKNPDLGFSDYAAAQLRQYHRLTKQIKPDME 147

Query: 141 KYEEQKKKLGPAFYGDQKTILQGLHSDRPEAVDKMVEDLEKQISKREKYSRRRTHNDDAD 200
            YE  ++K G  F+    ++L G H    E +D+MV DLEKQI KR+KYSRRR +NDDAD
Sbjct: 148 TYERLREKHGEEFFPTSNSLLHGTHVPSTEEIDRMVIDLEKQIEKRDKYSRRRPYNDDAD 207

Query: 201 IDYINERNMKFNKKLERFYGEHTAEIKQNLERGTAI 236
           IDYINERN KFNKK ERFYG++TAEIKQNLERGTA+
Sbjct: 208 IDYINERNAKFNKKAERFYGKYTAEIKQNLERGTAV 243

May be involved in pre-mRNA splicing.

Homo sapiens (taxid: 9606)

>sp|Q612R3|SYF2_CAEBR Pre-mRNA-splicing factor syf-2 OS=Caenorhabditis briggsae GN=syf-2 PE=3 SV=2

 Score =  169 bits (428), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 96/211 (45%), Positives = 148/211 (70%), Gaps = 4/211 (1%)

Query: 30  KRLKEIHLKRNESRQLNHQEVVEEDRRKQLPNNWEARKRKAEWILKDEEQRQKALEEGED 89
           +R +++H  R ++R+ NH +VVEEDRRK+LP N+EA+K + +W +K+ + R++A ++G D
Sbjct: 23  QRFRDLHKMRQKARKENHAQVVEEDRRKKLPKNFEAKKERDQWQVKELQDRKEAEDKGLD 82

Query: 90  YERVKMLNMTVAEAEKF---NKKKKNPDVGFSDYQQATARQYNRLVKQMKPDMSKYEEQK 146
           YERV+ L M+    EK     K+KKNPD GF+ Y+  T RQ+ RL   + PD+  Y++ K
Sbjct: 83  YERVRSLEMSADVTEKLEQKRKRKKNPDQGFASYEDMTLRQHTRLTAALDPDLESYKKMK 142

Query: 147 KKLGP-AFYGDQKTILQGLHSDRPEAVDKMVEDLEKQISKREKYSRRRTHNDDADIDYIN 205
           + +G   FY    T++ G H     A+D++V+D+  Q+ +RE+Y RRR ++ DA IDYIN
Sbjct: 143 ECVGGDQFYPTADTLIHGNHYPTTSAMDRLVKDVHGQVKRREQYHRRRLYDPDAPIDYIN 202

Query: 206 ERNMKFNKKLERFYGEHTAEIKQNLERGTAI 236
           E+N KFNKKL+++YG++T +IK +LERGTAI
Sbjct: 203 EKNKKFNKKLDKYYGKYTEDIKDDLERGTAI 233

May be involved in pre-mRNA splicing.

Caenorhabditis briggsae (taxid: 6238)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	236
350408898	230	PREDICTED: pre-mRNA-splicing factor syf2	0.961	0.986	0.678	2e-86
340724179	230	PREDICTED: pre-mRNA-splicing factor syf2	0.961	0.986	0.678	2e-86
328786043	231	PREDICTED: pre-mRNA-splicing factor Syf2	0.919	0.939	0.695	4e-83
380021853	229	PREDICTED: pre-mRNA-splicing factor Syf2	0.919	0.947	0.695	6e-83
383854545	232	PREDICTED: pre-mRNA-splicing factor syf2	0.957	0.974	0.668	2e-82
307202962	231	Pre-mRNA-splicing factor Syf2 [Harpegnat	0.902	0.922	0.689	9e-82
157111428	236	hypothetical protein AaeL_AAEL005880 [Ae	0.919	0.919	0.665	1e-81
158293148	235	AGAP010515-PA [Anopheles gambiae str. PE	0.919	0.923	0.674	2e-81
170044130	244	pre-mRNA-splicing factor Syf2 [Culex qui	0.995	0.963	0.615	1e-80
307170734	232	Pre-mRNA-splicing factor Syf2 [Camponotu	0.902	0.918	0.680	2e-80

>gi|350408898|ref|XP_003488549.1| PREDICTED: pre-mRNA-splicing factor syf2-like [Bombus impatiens]

 Score =  324 bits (830), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 156/230 (67%), Positives = 190/230 (82%), Gaps = 3/230 (1%)

Query: 10  LDMEAEQKNLTFQEKHAERLKRLKEIHLKRNESRQLNHQEVVEEDRRKQLPNNWEARKRK 69
           +D E      +  EKHAER+KRL+E+H+KRNE+RQ NH+EV+EED+R +LP+NWE+RKR+
Sbjct: 1   MDNENANNEKSLAEKHAERMKRLRELHVKRNEARQQNHKEVIEEDKRSKLPSNWESRKRQ 60

Query: 70  AEWILKDEEQRQKALEEGEDYERVKMLNMTVAEAEKFNKKKKN---PDVGFSDYQQATAR 126
           AEWI++DE  R+ A E+GEDYER K+L++   EAE+  +KKKN   PD GFSDY+QA  R
Sbjct: 61  AEWIVQDEAARKAAQEKGEDYERTKLLHIDATEAERIARKKKNRKNPDPGFSDYEQAAIR 120

Query: 127 QYNRLVKQMKPDMSKYEEQKKKLGPAFYGDQKTILQGLHSDRPEAVDKMVEDLEKQISKR 186
           QYNRLVK +KP+M  Y+E K+KLGPAFYGD+ TIL GLH D+ EAVDKMVEDLEKQI+KR
Sbjct: 121 QYNRLVKNIKPNMDSYDEAKEKLGPAFYGDRNTILHGLHEDKKEAVDKMVEDLEKQIAKR 180

Query: 187 EKYSRRRTHNDDADIDYINERNMKFNKKLERFYGEHTAEIKQNLERGTAI 236
           E+YSRRR HNDDADIDYINERN KFN+KLERFYGE+T E K NLERGTAI
Sbjct: 181 ERYSRRRMHNDDADIDYINERNAKFNQKLERFYGEYTRETKLNLERGTAI 230

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340724179|ref|XP_003400461.1| PREDICTED: pre-mRNA-splicing factor syf2-like [Bombus terrestris]

 Score =  324 bits (830), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 156/230 (67%), Positives = 190/230 (82%), Gaps = 3/230 (1%)

Query: 10  LDMEAEQKNLTFQEKHAERLKRLKEIHLKRNESRQLNHQEVVEEDRRKQLPNNWEARKRK 69
           +D E      +  EKHAER+KRL+E+H+KRNE+RQ NH+EV+EED+R +LP+NWE+RKR+
Sbjct: 1   MDNENANNEKSLAEKHAERMKRLRELHVKRNEARQQNHKEVIEEDKRSKLPSNWESRKRQ 60

Query: 70  AEWILKDEEQRQKALEEGEDYERVKMLNMTVAEAEKFNKKKKN---PDVGFSDYQQATAR 126
           AEWI++DE  R+ A E+GEDYER K+L++   EAE+  +KKKN   PD GFSDY+QA  R
Sbjct: 61  AEWIVQDEAARKAAQEKGEDYERTKLLHIDATEAERIARKKKNRKNPDPGFSDYEQAAIR 120

Query: 127 QYNRLVKQMKPDMSKYEEQKKKLGPAFYGDQKTILQGLHSDRPEAVDKMVEDLEKQISKR 186
           QYNRLVK +KP+M  Y+E K+KLGPAFYGD+ TIL GLH D+ EAVDKMVEDLEKQI+KR
Sbjct: 121 QYNRLVKNIKPNMDSYDETKEKLGPAFYGDRNTILHGLHEDKKEAVDKMVEDLEKQIAKR 180

Query: 187 EKYSRRRTHNDDADIDYINERNMKFNKKLERFYGEHTAEIKQNLERGTAI 236
           E+YSRRR HNDDADIDYINERN KFN+KLERFYGE+T E K NLERGTAI
Sbjct: 181 ERYSRRRMHNDDADIDYINERNAKFNQKLERFYGEYTRETKLNLERGTAI 230

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328786043|ref|XP_394026.2| PREDICTED: pre-mRNA-splicing factor Syf2-like [Apis mellifera]

 Score =  313 bits (802), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 153/220 (69%), Positives = 185/220 (84%), Gaps = 3/220 (1%)

Query: 20  TFQEKHAERLKRLKEIHLKRNESRQLNHQEVVEEDRRKQLPNNWEARKRKAEWILKDEEQ 79
           +  +KHAER+KRL+E+H KRNE+RQ NH+EVVEED+R +LP+NW +RKR+AEWI++DE  
Sbjct: 12  SLADKHAERMKRLRELHTKRNEARQQNHKEVVEEDKRNKLPSNWASRKRQAEWIIQDEAA 71

Query: 80  RQKALEEGEDYERVKMLNMTVAEAEKFNKKKKN---PDVGFSDYQQATARQYNRLVKQMK 136
           R+ A E+GEDYER+K+L++   EAE+  +KKKN   PD GFSDY+QA  RQYNRLVK +K
Sbjct: 72  RKAAQEKGEDYERMKLLHIDATEAERIARKKKNKKNPDPGFSDYEQAAIRQYNRLVKNIK 131

Query: 137 PDMSKYEEQKKKLGPAFYGDQKTILQGLHSDRPEAVDKMVEDLEKQISKREKYSRRRTHN 196
           P+M  YEE K KLGPAFYGD+ TIL GLH D+ EA+DKMVEDLEKQI+KR+KYSRRR HN
Sbjct: 132 PNMDSYEEAKDKLGPAFYGDKNTILHGLHEDKKEAIDKMVEDLEKQIAKRDKYSRRRMHN 191

Query: 197 DDADIDYINERNMKFNKKLERFYGEHTAEIKQNLERGTAI 236
           DDADIDYINERN KFN+KLERFYGE+T E K NLERGTAI
Sbjct: 192 DDADIDYINERNAKFNQKLERFYGEYTRETKLNLERGTAI 231

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380021853|ref|XP_003694771.1| PREDICTED: pre-mRNA-splicing factor Syf2-like [Apis florea]

 Score =  312 bits (800), Expect = 6e-83,   Method: Compositional matrix adjust.
 Identities = 153/220 (69%), Positives = 185/220 (84%), Gaps = 3/220 (1%)

Query: 20  TFQEKHAERLKRLKEIHLKRNESRQLNHQEVVEEDRRKQLPNNWEARKRKAEWILKDEEQ 79
           +  +KHAER+KRL+E+H KRNE+RQ NH+EVVEED+R +LP+NW +RKR+AEWI++DE  
Sbjct: 10  SLADKHAERMKRLRELHTKRNEARQQNHKEVVEEDKRNKLPSNWASRKRQAEWIIQDEAA 69

Query: 80  RQKALEEGEDYERVKMLNMTVAEAEKFNKKKKN---PDVGFSDYQQATARQYNRLVKQMK 136
           R+ A E+GEDYER+K+L++   EAE+  +KKKN   PD GFSDY+QA  RQYNRLVK +K
Sbjct: 70  RKAAQEKGEDYERMKLLHIDATEAERIARKKKNKKNPDPGFSDYEQAAIRQYNRLVKNIK 129

Query: 137 PDMSKYEEQKKKLGPAFYGDQKTILQGLHSDRPEAVDKMVEDLEKQISKREKYSRRRTHN 196
           P+M  YEE K KLGPAFYGD+ TIL GLH D+ EA+DKMVEDLEKQI+KR+KYSRRR HN
Sbjct: 130 PNMDSYEEAKDKLGPAFYGDKNTILHGLHEDKKEAIDKMVEDLEKQIAKRDKYSRRRMHN 189

Query: 197 DDADIDYINERNMKFNKKLERFYGEHTAEIKQNLERGTAI 236
           DDADIDYINERN KFN+KLERFYGE+T E K NLERGTAI
Sbjct: 190 DDADIDYINERNAKFNQKLERFYGEYTRETKLNLERGTAI 229

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383854545|ref|XP_003702781.1| PREDICTED: pre-mRNA-splicing factor syf2-like [Megachile rotundata]

 Score =  310 bits (795), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 153/229 (66%), Positives = 190/229 (82%), Gaps = 3/229 (1%)

Query: 11  DMEAEQKNLTFQEKHAERLKRLKEIHLKRNESRQLNHQEVVEEDRRKQLPNNWEARKRKA 70
           D +  +K  +  EKHAER+KRL+E+H KRNE+RQ NH+EV+EED+R +LP+NWE+RKR+A
Sbjct: 4   DNKTTEKEKSAAEKHAERMKRLRELHTKRNEARQQNHKEVIEEDKRSKLPSNWESRKRQA 63

Query: 71  EWILKDEEQRQKALEEGEDYERVKMLNMTVAEAEKFNKKKKN---PDVGFSDYQQATARQ 127
           EWI++DE  ++ A E+GEDY+R K+L++   EAE+  +KKKN   PD GFSDY+QA  RQ
Sbjct: 64  EWIMQDEAAKKLAQEKGEDYDRTKLLHIDATEAERIARKKKNKKNPDPGFSDYEQAAIRQ 123

Query: 128 YNRLVKQMKPDMSKYEEQKKKLGPAFYGDQKTILQGLHSDRPEAVDKMVEDLEKQISKRE 187
           YNRLVK +KP+M  YEE ++KLGPAFYGD+ TIL GLH D+ EA+DKMVEDLEKQI+KR+
Sbjct: 124 YNRLVKNVKPNMESYEEAREKLGPAFYGDRNTILHGLHEDKKEAIDKMVEDLEKQIAKRD 183

Query: 188 KYSRRRTHNDDADIDYINERNMKFNKKLERFYGEHTAEIKQNLERGTAI 236
           KYSRRR HNDDADIDYINERN KFN+KLERFYGE+T E K NLERGTAI
Sbjct: 184 KYSRRRMHNDDADIDYINERNAKFNQKLERFYGEYTRETKLNLERGTAI 232

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307202962|gb|EFN82182.1| Pre-mRNA-splicing factor Syf2 [Harpegnathos saltator]

 Score =  308 bits (790), Expect = 9e-82,   Method: Compositional matrix adjust.
 Identities = 149/216 (68%), Positives = 178/216 (82%), Gaps = 3/216 (1%)

Query: 24  KHAERLKRLKEIHLKRNESRQLNHQEVVEEDRRKQLPNNWEARKRKAEWILKDEEQRQKA 83
           KHAER+KRLK++H KRN++R  NH+EVVEED+R +LP NWE+RKRKAEWI++DE  R++A
Sbjct: 16  KHAERMKRLKDLHGKRNQARMENHKEVVEEDKRNKLPTNWESRKRKAEWIMQDEAARKEA 75

Query: 84  LEEGEDYERVKMLNMTVAEAEKFNKKKK---NPDVGFSDYQQATARQYNRLVKQMKPDMS 140
             +GEDYER K+L +   EAE+  +KK+   NPD GFSDY+QA  R YNRLVK +KP+M 
Sbjct: 76  EAKGEDYERQKLLQIDATEAERIARKKRSKQNPDPGFSDYEQAAIRSYNRLVKNIKPNME 135

Query: 141 KYEEQKKKLGPAFYGDQKTILQGLHSDRPEAVDKMVEDLEKQISKREKYSRRRTHNDDAD 200
            YEE K+KLG AFYGD+ TIL GLH D+ EA+DKMV +LEKQI+KREKYSRRR HNDDAD
Sbjct: 136 AYEESKEKLGAAFYGDRNTILHGLHEDKKEAIDKMVTNLEKQIAKREKYSRRRMHNDDAD 195

Query: 201 IDYINERNMKFNKKLERFYGEHTAEIKQNLERGTAI 236
           IDYINERN KFN+KLERFYGEHT E K NLERGTAI
Sbjct: 196 IDYINERNAKFNQKLERFYGEHTRETKLNLERGTAI 231

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157111428|ref|XP_001651561.1| hypothetical protein AaeL_AAEL005880 [Aedes aegypti] gi|108878389|gb|EAT42614.1| AAEL005880-PA [Aedes aegypti]

 Score =  308 bits (789), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 147/221 (66%), Positives = 184/221 (83%), Gaps = 4/221 (1%)

Query: 20  TFQEKHAERLKRLKEIHLKRNESRQLNHQEVVEEDRRKQLPNNWEARKRKAEWILKDEEQ 79
           +F EKHAER++RLK++H++RNE+R  NHQEV+ ED RK+LP NWEARKR+A+W++ D + 
Sbjct: 16  SFAEKHAERMERLKKLHMQRNEARNSNHQEVIAEDERKKLPANWEARKRQADWLIDDSKA 75

Query: 80  RQKALEEGEDYERVKMLNMTVAEAEKFNK---KKKNPDVGFSDYQQATARQYNRLVKQMK 136
           + +A  +G DY RVK++ ++ AEAE+F+K   KKKN D GFSDY+  TARQYNRLVK M+
Sbjct: 76  KAEAEAKGLDYNRVKLMKVSAAEAERFDKLRSKKKNADPGFSDYEAQTARQYNRLVKNME 135

Query: 137 P-DMSKYEEQKKKLGPAFYGDQKTILQGLHSDRPEAVDKMVEDLEKQISKREKYSRRRTH 195
           P D+ KYEEQK++ G AFYG    +LQGLH D P A+DKMV+DLE+QI KR+K+SRRRTH
Sbjct: 136 PRDLIKYEEQKERYGDAFYGGPNVVLQGLHKDTPVAIDKMVKDLEQQIDKRKKFSRRRTH 195

Query: 196 NDDADIDYINERNMKFNKKLERFYGEHTAEIKQNLERGTAI 236
           NDDADIDYINE+N +FNKKLERFYGEHTAEIKQNLERGTAI
Sbjct: 196 NDDADIDYINEKNARFNKKLERFYGEHTAEIKQNLERGTAI 236

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|158293148|ref|XP_314488.4| AGAP010515-PA [Anopheles gambiae str. PEST] gi|157016819|gb|EAA09888.4| AGAP010515-PA [Anopheles gambiae str. PEST]

 Score =  308 bits (788), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 149/221 (67%), Positives = 180/221 (81%), Gaps = 4/221 (1%)

Query: 20  TFQEKHAERLKRLKEIHLKRNESRQLNHQEVVEEDRRKQLPNNWEARKRKAEWILKDEEQ 79
           TF EKHAER+ RLK++H +RNE+R  NHQEV+ E  RK+LP NWE+R+R+AEW++ D + 
Sbjct: 15  TFAEKHAERMARLKQLHTQRNEARASNHQEVIAEHERKKLPANWESRQRQAEWLMGDLKA 74

Query: 80  RQKALEEGEDYERVKMLNMTVAEAEKFNK---KKKNPDVGFSDYQQATARQYNRLVKQMK 136
           R +A E+G DY RVKMLN++ AEA++ +K   KK+N D GFSDY+  TARQYNRLVK M 
Sbjct: 75  RTEAEEKGLDYNRVKMLNVSAAEADRIDKLKAKKRNADPGFSDYEAQTARQYNRLVKAMP 134

Query: 137 P-DMSKYEEQKKKLGPAFYGDQKTILQGLHSDRPEAVDKMVEDLEKQISKREKYSRRRTH 195
           P D+ KYEEQK+K G AFYG    ILQGLH D P A+D MV+DLE QI+KR+K+SRRRTH
Sbjct: 135 PRDLVKYEEQKEKYGDAFYGGPNVILQGLHKDTPAAIDNMVKDLEGQIAKRKKFSRRRTH 194

Query: 196 NDDADIDYINERNMKFNKKLERFYGEHTAEIKQNLERGTAI 236
           NDDADIDYINE+N +FNKKLERFYGEHTAEIKQNLERGTAI
Sbjct: 195 NDDADIDYINEKNARFNKKLERFYGEHTAEIKQNLERGTAI 235

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170044130|ref|XP_001849711.1| pre-mRNA-splicing factor Syf2 [Culex quinquefasciatus] gi|167867392|gb|EDS30775.1| pre-mRNA-splicing factor Syf2 [Culex quinquefasciatus]

 Score =  305 bits (780), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 149/242 (61%), Positives = 186/242 (76%), Gaps = 7/242 (2%)

Query: 2   SITLTKYTLDMEAEQKNL---TFQEKHAERLKRLKEIHLKRNESRQLNHQEVVEEDRRKQ 58
           S T T  + D      ++   T  EKHAER+ RLK +HL+RNE+R  NH EV+ ED RK+
Sbjct: 3   SSTATAPSTDPGPSSSSIAPKTAAEKHAERMARLKNLHLQRNEARVSNHSEVLAEDERKK 62

Query: 59  LPNNWEARKRKAEWILKDEEQRQKALEEGEDYERVKMLNMTVAEAEKFNK---KKKNPDV 115
           LP NWEARKR+A+W++ D + R +A  +G DY RVK++ ++ AEA++F+K   KKKN D 
Sbjct: 63  LPTNWEARKRQADWLIDDSKARAEAEAKGLDYNRVKLMKVSAAEADRFDKLKSKKKNADP 122

Query: 116 GFSDYQQATARQYNRLVKQMKP-DMSKYEEQKKKLGPAFYGDQKTILQGLHSDRPEAVDK 174
           GFSDY+  TARQYNRL+K M+P D+ KYEEQK + G AFYG    +LQG+H D P A+DK
Sbjct: 123 GFSDYEAQTARQYNRLIKTMEPRDLVKYEEQKAQYGDAFYGGPNVVLQGMHKDSPGAIDK 182

Query: 175 MVEDLEKQISKREKYSRRRTHNDDADIDYINERNMKFNKKLERFYGEHTAEIKQNLERGT 234
           MV+DLE+QI KR+K+SRRRTHNDDADIDYINE+N +FNKKLERFYGEHTAEIKQNLERGT
Sbjct: 183 MVKDLEQQIDKRKKFSRRRTHNDDADIDYINEKNARFNKKLERFYGEHTAEIKQNLERGT 242

Query: 235 AI 236
           AI
Sbjct: 243 AI 244

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307170734|gb|EFN62859.1| Pre-mRNA-splicing factor Syf2 [Camponotus floridanus]

 Score =  304 bits (778), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 147/216 (68%), Positives = 179/216 (82%), Gaps = 3/216 (1%)

Query: 24  KHAERLKRLKEIHLKRNESRQLNHQEVVEEDRRKQLPNNWEARKRKAEWILKDEEQRQKA 83
           K+ ER+KRL+++H KRNE+R  NH+EVVEED+R +LP NWE+RKR+AEWI++DE  R++A
Sbjct: 17  KYQERMKRLRDLHAKRNEARMQNHKEVVEEDKRNKLPANWESRKRQAEWIMQDEAARKEA 76

Query: 84  LEEGEDYERVKMLNMTVAEAEKFNKKKK---NPDVGFSDYQQATARQYNRLVKQMKPDMS 140
             +GEDYER K+LN+   EAE+  +KK+   NPD GFSDY+QA  R YNRLVK +KP+M 
Sbjct: 77  ETKGEDYERNKLLNIDATEAERIARKKRSKQNPDPGFSDYEQAAIRSYNRLVKNIKPNME 136

Query: 141 KYEEQKKKLGPAFYGDQKTILQGLHSDRPEAVDKMVEDLEKQISKREKYSRRRTHNDDAD 200
            YEE K+KLGPAFYGD+ TIL GLH D+ EA+DKMV +LEKQI+KREKYSRRR HNDDAD
Sbjct: 137 AYEEAKEKLGPAFYGDRNTILHGLHEDKKEAIDKMVTNLEKQIAKREKYSRRRMHNDDAD 196

Query: 201 IDYINERNMKFNKKLERFYGEHTAEIKQNLERGTAI 236
           IDYINERN KFN+KLERFYGE+T E K NLERGTAI
Sbjct: 197 IDYINERNAKFNQKLERFYGEYTRETKLNLERGTAI 232

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	236
UNIPROTKB|F1P0B5	235	SYF2 "Uncharacterized protein"	0.906	0.910	0.583	9.4e-66
MGI|MGI:1915842	242	Syf2 "SYF2 homolog, RNA splici	0.906	0.884	0.574	1.5e-65
RGD|621592	242	Syf2 "SYF2 homolog, RNA splici	0.906	0.884	0.574	1.5e-65
FB|FBgn0033556	226	CG12343 [Drosophila melanogast	0.936	0.977	0.591	2.5e-65
UNIPROTKB|I3LK70	249	SYF2 "Uncharacterized protein"	0.906	0.859	0.569	6.7e-65
UNIPROTKB|Q28XK6	226	Syf2 "Pre-mRNA-splicing factor	0.936	0.977	0.577	6.7e-65
UNIPROTKB|F1N607	235	SYF2 "Uncharacterized protein"	0.906	0.910	0.569	8.5e-65
UNIPROTKB|O95926	243	SYF2 "Pre-mRNA-splicing factor	0.906	0.880	0.569	1.4e-64
ZFIN|ZDB-GENE-040801-170	238	syf2 "SYF2 homolog, RNA splici	0.949	0.941	0.526	2.3e-62
WB|WBGene00019402	234	K04G7.11 [Caenorhabditis elega	0.877	0.884	0.417	1.9e-44

UNIPROTKB|F1P0B5 SYF2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 669 (240.6 bits), Expect = 9.4e-66, P = 9.4e-66
 Identities = 126/216 (58%), Positives = 160/216 (74%)

Query:    23 EKHAERLKRLKEIHLKRNESRQLNHQEVVEEDRRKQLPNNWEARKRKAEWILKDEEQRQK 82
             +K  ERL++ +E+HLKRNE+R+LNHQEVVEED+R +LP NWEA+K + EW LK EE++++
Sbjct:    20 QKREERLRKFRELHLKRNEARKLNHQEVVEEDKRLKLPPNWEAKKARLEWELKVEEKKKE 79

Query:    83 ALEEGEDYERVKMLNMTVXXXXX--XXXXXXXPDVGFSDYQQATARQYNRLVKQMKPDMS 140
                 GEDYERVK+L ++               PD+GFSDY  A  RQY RL +Q+KPD+ 
Sbjct:    80 CAARGEDYERVKLLEISAEDAERWERKKKRKNPDLGFSDYAAAQLRQYQRLTRQIKPDLE 139

Query:   141 KYEEQKKKLGPAFYGDQKTILQGLHSDRPEAVDKMVEDLEKQISKREKYSRRRTHNDDAD 200
             +YE+ K++ G A Y    ++L G H    E +D+MV DLEKQI KREKYSRRR +NDDAD
Sbjct:   140 QYEKLKEQYGEALYPTSDSLLHGTHVPDKEGIDRMVADLEKQIEKREKYSRRRPYNDDAD 199

Query:   201 IDYINERNMKFNKKLERFYGEHTAEIKQNLERGTAI 236
             IDYINERN KFNKK ERFYG++TAEIKQNLERGTA+
Sbjct:   200 IDYINERNAKFNKKAERFYGKYTAEIKQNLERGTAV 235

GO:0071013 "catalytic step 2 spliceosome" evidence=IEA

MGI|MGI:1915842 Syf2 "SYF2 homolog, RNA splicing factor (S. cerevisiae)" [Mus musculus (taxid:10090)]

 Score = 667 (239.9 bits), Expect = 1.5e-65, P = 1.5e-65
 Identities = 124/216 (57%), Positives = 161/216 (74%)

Query:    23 EKHAERLKRLKEIHLKRNESRQLNHQEVVEEDRRKQLPNNWEARKRKAEWILKDEEQRQK 82
             +K  +RL++ +E+HLKRNE+R+LNHQEVVEED+R +LP NWEA+K + EW L++EE++++
Sbjct:    27 QKREQRLRKFRELHLKRNEARKLNHQEVVEEDKRLKLPANWEAKKARLEWELQEEEKKKE 86

Query:    83 ALEEGEDYERVKMLNMTVXXXXX--XXXXXXXPDVGFSDYQQATARQYNRLVKQMKPDMS 140
                 GEDYE+VK+L ++               PD+GFSDY  A  RQY+RL KQ+KPDM 
Sbjct:    87 CAARGEDYEKVKLLEISAEDAERWERRKKKKNPDLGFSDYAAAQLRQYHRLTKQIKPDME 146

Query:   141 KYEEQKKKLGPAFYGDQKTILQGLHSDRPEAVDKMVEDLEKQISKREKYSRRRTHNDDAD 200
              YE Q++K G  F+    ++L G H    E +D+MV DLEKQI KR+KYSRRR +NDDAD
Sbjct:   147 SYERQREKHGEDFFPTSNSLLHGTHVPSSEEIDRMVLDLEKQIEKRDKYSRRRPYNDDAD 206

Query:   201 IDYINERNMKFNKKLERFYGEHTAEIKQNLERGTAI 236
             IDYINERN KFNKK ERFYG++TAEIKQNLERGTA+
Sbjct:   207 IDYINERNAKFNKKAERFYGKYTAEIKQNLERGTAV 242

GO:0000075 "cell cycle checkpoint" evidence=IMP

GO:0001701 "in utero embryonic development" evidence=IMP

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IDA

GO:0005681 "spliceosomal complex" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

GO:0007369 "gastrulation" evidence=IMP

GO:0008380 "RNA splicing" evidence=IEA

GO:0048568 "embryonic organ development" evidence=IMP

GO:0071013 "catalytic step 2 spliceosome" evidence=ISO

RGD|621592 Syf2 "SYF2 homolog, RNA splicing factor (S. cerevisiae)" [Rattus norvegicus (taxid:10116)]

 Score = 667 (239.9 bits), Expect = 1.5e-65, P = 1.5e-65
 Identities = 124/216 (57%), Positives = 161/216 (74%)

Query:    23 EKHAERLKRLKEIHLKRNESRQLNHQEVVEEDRRKQLPNNWEARKRKAEWILKDEEQRQK 82
             +K  +RL++ +E+HLKRNE+R+LNHQEVVEED+R +LP NWEA+K + EW L++EE++++
Sbjct:    27 QKREQRLRKFRELHLKRNEARKLNHQEVVEEDKRLKLPANWEAKKARLEWELQEEEKKKE 86

Query:    83 ALEEGEDYERVKMLNMTVXXXXX--XXXXXXXPDVGFSDYQQATARQYNRLVKQMKPDMS 140
                 GEDYE+VK+L ++               PD+GFSDY  A  RQY+RL KQ+KPDM 
Sbjct:    87 CAARGEDYEKVKLLEISAEDAERWERRKKKKNPDLGFSDYAAAQLRQYHRLTKQIKPDME 146

Query:   141 KYEEQKKKLGPAFYGDQKTILQGLHSDRPEAVDKMVEDLEKQISKREKYSRRRTHNDDAD 200
              YE Q++K G  F+    ++L G H    E +D+MV DLEKQI KR+KYSRRR +NDDAD
Sbjct:   147 SYERQREKHGEDFFPTSNSLLHGTHVPSSEEIDRMVLDLEKQIEKRDKYSRRRPYNDDAD 206

Query:   201 IDYINERNMKFNKKLERFYGEHTAEIKQNLERGTAI 236
             IDYINERN KFNKK ERFYG++TAEIKQNLERGTA+
Sbjct:   207 IDYINERNAKFNKKAERFYGKYTAEIKQNLERGTAV 242

GO:0000075 "cell cycle checkpoint" evidence=ISO

GO:0001701 "in utero embryonic development" evidence=ISO

GO:0005634 "nucleus" evidence=ISO

GO:0006397 "mRNA processing" evidence=IEA

GO:0007369 "gastrulation" evidence=ISO

GO:0008380 "RNA splicing" evidence=IEA

GO:0048568 "embryonic organ development" evidence=ISO

GO:0071013 "catalytic step 2 spliceosome" evidence=IEA;ISO

FB|FBgn0033556 CG12343 [Drosophila melanogaster (taxid:7227)]

 Score = 665 (239.2 bits), Expect = 2.5e-65, P = 2.5e-65
 Identities = 133/225 (59%), Positives = 161/225 (71%)

Query:    16 QKNLTFQEKHAERLKRLKEIHLKRNESRQLNHQEVVEEDRRKQLPNNWEARKRKAEWILK 75
             +K  T  EK AER  RL ++H KR E+R  NHQEVV ED RK+LP NWEARKR+AEWIL 
Sbjct:     2 EKTKTAAEKLAERKARLLDLHKKRQEARTDNHQEVVAEDARKKLPKNWEARKRQAEWILA 61

Query:    76 DEEQRQKALEEGEDYERVKMLNMTVXXXXXXXXXXXX---PDVGFSDYQQATARQYNRLV 132
             D++ R +A   G+DYER+K+L ++                PD+GFS Y+  TARQYNRLV
Sbjct:    62 DDKARAEAQAAGKDYERLKLLEVSAVDADRIEKKKKRKDNPDLGFSTYEAQTARQYNRLV 121

Query:   133 KQMKP-DMSKYEEQKKKLGPAFYGDQKTILQGLHSDRPEAVDKMVEDLEKQISKREKYSR 191
             K M   D+ KYE QK++LG AFYG   T L     D P A++KMV DLE+QI +R+KYSR
Sbjct:   122 KSMPARDLEKYERQKEELGDAFYGGAHTTLHSRTKDTPGAINKMVTDLEQQIERRKKYSR 181

Query:   192 RRTHNDDADIDYINERNMKFNKKLERFYGEHTAEIKQNLERGTAI 236
             RR +NDDAD+D+INERN KFNKKL+RFY EHTAEIKQNLERGTAI
Sbjct:   182 RRIYNDDADVDFINERNSKFNKKLDRFYSEHTAEIKQNLERGTAI 226

GO:0000398 "mRNA splicing, via spliceosome" evidence=IC

GO:0071011 "precatalytic spliceosome" evidence=IDA

GO:0071013 "catalytic step 2 spliceosome" evidence=IDA

GO:0022008 "neurogenesis" evidence=IMP

UNIPROTKB|I3LK70 SYF2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 661 (237.7 bits), Expect = 6.7e-65, P = 6.7e-65
 Identities = 123/216 (56%), Positives = 160/216 (74%)

Query:    23 EKHAERLKRLKEIHLKRNESRQLNHQEVVEEDRRKQLPNNWEARKRKAEWILKDEEQRQK 82
             +K  +RL++ +E+HLKRNE+R+LNHQEVVEED+R +LP NWEA+K + EW L++EE++++
Sbjct:    34 QKREQRLRKFRELHLKRNEARKLNHQEVVEEDKRLKLPANWEAKKARLEWELQEEEKKKE 93

Query:    83 ALEEGEDYERVKMLNMTVXXXXX--XXXXXXXPDVGFSDYQQATARQYNRLVKQMKPDMS 140
                 GEDYE+VK+L ++               PD+GFSDY  A  RQY+RL KQ+KPDM 
Sbjct:    94 CAARGEDYEKVKLLEISAEDAERWERKKRRKNPDLGFSDYAAAQLRQYHRLTKQIKPDME 153

Query:   141 KYEEQKKKLGPAFYGDQKTILQGLHSDRPEAVDKMVEDLEKQISKREKYSRRRTHNDDAD 200
              YE  ++K G  F+    ++L G H    E +D+MV DLEKQI KR+KYSRRR +NDDAD
Sbjct:   154 TYERLREKHGEEFFPTSNSLLHGTHVPSTEEIDRMVVDLEKQIEKRDKYSRRRPYNDDAD 213

Query:   201 IDYINERNMKFNKKLERFYGEHTAEIKQNLERGTAI 236
             IDYINERN KFNKK ERFYG++TAEIKQNLERGTA+
Sbjct:   214 IDYINERNAKFNKKAERFYGKYTAEIKQNLERGTAV 249

GO:0071013 "catalytic step 2 spliceosome" evidence=IEA

UNIPROTKB|Q28XK6 Syf2 "Pre-mRNA-splicing factor Syf2" [Drosophila pseudoobscura pseudoobscura (taxid:46245)]

 Score = 661 (237.7 bits), Expect = 6.7e-65, P = 6.7e-65
 Identities = 130/225 (57%), Positives = 164/225 (72%)

Query:    16 QKNLTFQEKHAERLKRLKEIHLKRNESRQLNHQEVVEEDRRKQLPNNWEARKRKAEWILK 75
             +++ +  +K AER  RL ++H KR E+R  NHQEVV ED RK+LP NWEARKR+AEW+L 
Sbjct:     2 EQSKSASDKLAERKARLLDLHKKRQEARTDNHQEVVAEDARKKLPKNWEARKRQAEWLLA 61

Query:    76 DEEQRQKALEEGEDYERVKMLNMTVXXXXXXXXXXXX---PDVGFSDYQQATARQYNRLV 132
             D++ R+ A   G+DYER+K+L ++                PD+GFS Y+  TARQY+RLV
Sbjct:    62 DDKAREDAQAAGKDYERLKLLEVSAIDAERIEKKKKRKDNPDLGFSTYEAQTARQYSRLV 121

Query:   133 KQMKP-DMSKYEEQKKKLGPAFYGDQKTILQGLHSDRPEAVDKMVEDLEKQISKREKYSR 191
             K M   DM KYE+QK +LG AFYG   T L  L  D P A++KMV DL++QI +R+KYSR
Sbjct:   122 KGMPARDMEKYEKQKAELGEAFYGGPHTTLHALTKDTPAAINKMVNDLDQQIERRKKYSR 181

Query:   192 RRTHNDDADIDYINERNMKFNKKLERFYGEHTAEIKQNLERGTAI 236
             RR +NDDAD+D+INERN KFNKKL+RFYGEHTAEIKQNLERGTAI
Sbjct:   182 RRIYNDDADVDFINERNSKFNKKLDRFYGEHTAEIKQNLERGTAI 226

GO:0000398 "mRNA splicing, via spliceosome" evidence=ISS

GO:0071004 "U2-type prespliceosome" evidence=ISS

GO:0071006 "U2-type catalytic step 1 spliceosome" evidence=ISS

GO:0071007 "U2-type catalytic step 2 spliceosome" evidence=ISS

GO:0071008 "U2-type post-mRNA release spliceosomal complex" evidence=ISS

UNIPROTKB|F1N607 SYF2 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 660 (237.4 bits), Expect = 8.5e-65, P = 8.5e-65
 Identities = 123/216 (56%), Positives = 160/216 (74%)

Query:    23 EKHAERLKRLKEIHLKRNESRQLNHQEVVEEDRRKQLPNNWEARKRKAEWILKDEEQRQK 82
             +K  +RL++ +E+HLKRNE+R+LNHQEVVEED+R +LP NWEA+K + EW L++EE++++
Sbjct:    20 QKREQRLRKFRELHLKRNEARKLNHQEVVEEDKRLKLPANWEAKKARLEWELQEEEKKKE 79

Query:    83 ALEEGEDYERVKMLNMTVXXXXX--XXXXXXXPDVGFSDYQQATARQYNRLVKQMKPDMS 140
                 GEDYE+VK+L ++               PD+GFSDY  A  RQY+RL KQ+KPDM 
Sbjct:    80 CAARGEDYEKVKLLEISAEDAERWERKKRRKNPDLGFSDYAAAQLRQYHRLTKQIKPDME 139

Query:   141 KYEEQKKKLGPAFYGDQKTILQGLHSDRPEAVDKMVEDLEKQISKREKYSRRRTHNDDAD 200
              YE  ++K G  F+    ++L G H    E +D+MV DLEKQI KR+KYSRRR +NDDAD
Sbjct:   140 TYERLREKHGEEFFPTSNSLLHGTHVPSTEEIDRMVLDLEKQIEKRDKYSRRRPYNDDAD 199

Query:   201 IDYINERNMKFNKKLERFYGEHTAEIKQNLERGTAI 236
             IDYINERN KFNKK ERFYG++TAEIKQNLERGTA+
Sbjct:   200 IDYINERNAKFNKKAERFYGKYTAEIKQNLERGTAV 235

GO:0071013 "catalytic step 2 spliceosome" evidence=IEA

UNIPROTKB|O95926 SYF2 "Pre-mRNA-splicing factor SYF2" [Homo sapiens (taxid:9606)]

 Score = 658 (236.7 bits), Expect = 1.4e-64, P = 1.4e-64
 Identities = 123/216 (56%), Positives = 159/216 (73%)

Query:    23 EKHAERLKRLKEIHLKRNESRQLNHQEVVEEDRRKQLPNNWEARKRKAEWILKDEEQRQK 82
             +K  +RL++ +E+HL RNE+R+LNHQEVVEED+R +LP NWEA+K + EW LK+EE++++
Sbjct:    28 QKREQRLRKFRELHLMRNEARKLNHQEVVEEDKRLKLPANWEAKKARLEWELKEEEKKKE 87

Query:    83 ALEEGEDYERVKMLNMTVXXXXX--XXXXXXXPDVGFSDYQQATARQYNRLVKQMKPDMS 140
                 GEDYE+VK+L ++               PD+GFSDY  A  RQY+RL KQ+KPDM 
Sbjct:    88 CAARGEDYEKVKLLEISAEDAERWERKKKRKNPDLGFSDYAAAQLRQYHRLTKQIKPDME 147

Query:   141 KYEEQKKKLGPAFYGDQKTILQGLHSDRPEAVDKMVEDLEKQISKREKYSRRRTHNDDAD 200
              YE  ++K G  F+    ++L G H    E +D+MV DLEKQI KR+KYSRRR +NDDAD
Sbjct:   148 TYERLREKHGEEFFPTSNSLLHGTHVPSTEEIDRMVIDLEKQIEKRDKYSRRRPYNDDAD 207

Query:   201 IDYINERNMKFNKKLERFYGEHTAEIKQNLERGTAI 236
             IDYINERN KFNKK ERFYG++TAEIKQNLERGTA+
Sbjct:   208 IDYINERNAKFNKKAERFYGKYTAEIKQNLERGTAV 243

GO:0005634 "nucleus" evidence=IDA;NAS

GO:0071013 "catalytic step 2 spliceosome" evidence=IDA

GO:0000398 "mRNA splicing, via spliceosome" evidence=IC

ZFIN|ZDB-GENE-040801-170 syf2 "SYF2 homolog, RNA splicing factor (S. cerevisiae)" [Danio rerio (taxid:7955)]

 Score = 637 (229.3 bits), Expect = 2.3e-62, P = 2.3e-62
 Identities = 119/226 (52%), Positives = 162/226 (71%)

Query:    13 EAEQKNLTFQEKHAERLKRLKEIHLKRNESRQLNHQEVVEEDRRKQLPNNWEARKRKAEW 72
             E E       +K  ERL++ +E+H KRNE+R+LNHQEVVEED+R +LP+NWEA+K + E+
Sbjct:    13 EEEVTETPAAQKREERLRKFRELHFKRNEARKLNHQEVVEEDKRLKLPSNWEAKKARLEY 72

Query:    73 ILKDEEQRQKALEEGEDYERVKMLNMTVXXXXX--XXXXXXXPDVGFSDYQQATARQYNR 130
              L  ++++++  E GEDY+RVK+L ++               PD GFS Y +A  RQY R
Sbjct:    73 ELLVDQKKKECAERGEDYDRVKLLEISAEDAERWERKKKKRNPDPGFSGYAEAQLRQYQR 132

Query:   131 LVKQMKPDMSKYEEQKKKLGPAFYGDQKTILQGLHSDRPEAVDKMVEDLEKQISKREKYS 190
             L KQ+KPDM  YE+QK++ G  F+    +++ G H    +++++MV+D+EKQI KR KYS
Sbjct:   133 LTKQIKPDMENYEKQKEECGEDFHPTSNSLIYGTHVPSKDSINRMVDDVEKQIEKRAKYS 192

Query:   191 RRRTHNDDADIDYINERNMKFNKKLERFYGEHTAEIKQNLERGTAI 236
             RRR +NDDADIDYINERN KFNKK ERFYG++TAEIKQNLERGTA+
Sbjct:   193 RRRAYNDDADIDYINERNAKFNKKAERFYGKYTAEIKQNLERGTAV 238

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

GO:0008380 "RNA splicing" evidence=IEA

WB|WBGene00019402 K04G7.11 [Caenorhabditis elegans (taxid:6239)]

 Score = 468 (169.8 bits), Expect = 1.9e-44, P = 1.9e-44
 Identities = 88/211 (41%), Positives = 137/211 (64%)

Query:    30 KRLKEIHLKRNESRQLNHQEVVEEDRRKQLPNNWEARKRKAEWILKDEEQRQKALEEGED 89
             +R +++H  R  +R+ NH++VVEEDRR +LP N EA+K + +W +K+ + R+ A ++G D
Sbjct:    24 QRFRDLHKLRQRARKENHEQVVEEDRRSKLPKNHEAKKERDQWQVKELQDRKAAEDKGLD 83

Query:    90 YERVKMLNMTVXXXXXXXXXXXX---PDVGFSDYQQATARQYNRLVKQMKPDMSKYEEQK 146
             YERV+ L M+                PD GF+ Y+  T RQ+ RL   + PD+  Y++ +
Sbjct:    84 YERVRSLEMSADVTEKLEQKRKRKKNPDQGFTSYEDMTLRQHTRLTAALDPDLDSYKKMR 143

Query:   147 KKLG-PAFYGDQKTILQGLHSDRPEAVDKMVEDLEKQISKREKYSRRRTHNDDADIDYIN 205
             + +G   FY    T++ G H     A+DK+ +D+  Q+ +RE+Y RRR ++ DA IDYIN
Sbjct:   144 ECVGGEQFYPTADTLIHGNHYPTTAAMDKLTKDVHGQVKRREQYHRRRLYDPDAPIDYIN 203

Query:   206 ERNMKFNKKLERFYGEHTAEIKQNLERGTAI 236
             E+N KFNKKL+++YG++T +IK +LERGTAI
Sbjct:   204 EKNKKFNKKLDKYYGKYTEDIKDDLERGTAI 234

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0040010 "positive regulation of growth rate" evidence=IMP

GO:0002009 "morphogenesis of an epithelium" evidence=IMP

GO:0010171 "body morphogenesis" evidence=IMP

GO:0040011 "locomotion" evidence=IMP

GO:0000003 "reproduction" evidence=IMP

GO:0040007 "growth" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

GO:0040035 "hermaphrodite genitalia development" evidence=IMP

GO:0006898 "receptor-mediated endocytosis" evidence=IMP

GO:0042127 "regulation of cell proliferation" evidence=IMP

GO:0040020 "regulation of meiosis" evidence=IMP

GO:0007281 "germ cell development" evidence=IMP

GO:0008406 "gonad development" evidence=IMP

GO:0016477 "cell migration" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q28XK6	SYF2_DROPS	No assigned EC number	0.6199	0.9194	0.9601	yes	N/A
Q09385	SYF2_CAEEL	No assigned EC number	0.4454	0.8771	0.8846	yes	N/A
Q28G05	SYF2_XENTR	No assigned EC number	0.5911	0.9406	0.8915	yes	N/A
Q6DV01	SYF2_GECJA	No assigned EC number	0.5815	0.9872	0.9357	N/A	N/A
Q8AVQ6	SYF2_XENLA	No assigned EC number	0.5866	0.9406	0.925	N/A	N/A
O95926	SYF2_HUMAN	No assigned EC number	0.5972	0.9067	0.8806	yes	N/A
Q9D198	SYF2_MOUSE	No assigned EC number	0.5895	0.9449	0.9214	yes	N/A
Q6CFW4	SYF2_YARLI	No assigned EC number	0.3157	0.7711	0.9333	yes	N/A
Q9V5Q4	SYF2_DROME	No assigned EC number	0.6177	0.9364	0.9778	yes	N/A
O59733	SYF2_SCHPO	No assigned EC number	0.3529	0.8771	0.9039	yes	N/A
Q6DGP2	SYF2_DANRE	No assigned EC number	0.5694	0.9067	0.8991	yes	N/A
Q6BVE0	SYF2_DEBHA	No assigned EC number	0.3014	0.8093	0.8268	yes	N/A
Q4QRB2	SYF2_RAT	No assigned EC number	0.5895	0.9449	0.9214	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	236
pfam08231	157	pfam08231, SYF2, SYF2 splicing factor	1e-47

>gnl|CDD|219755 pfam08231, SYF2, SYF2 splicing factor

 Score =  154 bits (391), Expect = 1e-47
 Identities = 81/156 (51%), Positives = 109/156 (69%), Gaps = 9/156 (5%)

Query: 85  EEGEDYERVKMLNMTVAEAEKFNKKKK----NPDVGFSDY-QQATARQYNRLVKQMKPDM 139
           E+G D+ER + L+ +  E+EK++KKKK      D GF+DY Q A  R Y R +K +KPD+
Sbjct: 2   EQGIDFERKRALDWSAEESEKWDKKKKKKKNKDDFGFNDYEQDALYRAYKRRLKNLKPDL 61

Query: 140 SKYEEQKKKLGPAFYGDQK----TILQGLHSDRPEAVDKMVEDLEKQISKREKYSRRRTH 195
            +YE+QK+ +G  FY        +IL   +    EA+D++V+DLEKQ  KR K+SRRR  
Sbjct: 62  EEYEKQKEAVGEKFYATFYRTADSILYTSNKPTEEAIDRLVQDLEKQQEKRLKFSRRRGF 121

Query: 196 NDDADIDYINERNMKFNKKLERFYGEHTAEIKQNLE 231
           +D+ADIDYINERN KFNKKL+RFY ++TAEIKQNLE
Sbjct: 122 DDEADIDYINERNKKFNKKLDRFYDKYTAEIKQNLE 157

Proteins in this family are involved in cell cycle progression and pre-mRNA splicing. Length = 157

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	236
KOG2609|consensus	228		100.0
PF08231	153	SYF2: SYF2 splicing factor; InterPro: IPR013260 Pr	100.0

>KOG2609|consensus

Probab=100.00  E-value=1.8e-64  Score=432.55  Aligned_cols=216  Identities=59%  Similarity=0.915  Sum_probs=208.2

Q ss_pred             hHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHhhhHHHHHHHHhhCCCHHHHHHhhhhH
Q psy15690         21 FQEKHAERLKRLKEIHLKRNESRQLNHQEVVEEDRRKQLPNNWEARKRKAEWILKDEEQRQKALEEGEDYERVKMLNMTV  100 (236)
Q Consensus        21 ~~~~~~~r~~rl~eLk~K~~es~~~N~kev~~E~kr~~~p~~~e~~~~r~~~~~~~~~~k~e~~~~g~D~er~k~l~~t~  100 (236)
                      ....++.|.+||.+|+++|+++++.||.+||+|+++.++|++|+++.++..|++.+.+.+.++++.|.|++|+++|+||+
T Consensus         7 ~~~~~~~r~kR~~~L~k~R~eARk~nheeVv~E~~r~klp~~~ea~~~r~~~E~~e~~~~~~~~a~G~D~er~r~le~s~   86 (228)
T KOG2609|consen    7 DAKKLELRRKRVRELHKKRNEARKENHEEVVEEDRRMKLPKNWEARKERKEWELKEKEKKKEAEAQGLDYERRRLLEGSA   86 (228)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhchhhccCCchhHHHHHHHhhhhhHHHHHHHHHhccccHHHHhcccccH
Confidence            45578999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhh--c--c-CCCCCcchHHHHHHHHHHHhhhhcCCChHHhHHHHhhcC-CCCcCCccccccccCCCCHHHHHH
Q psy15690        101 AEAEKFNKK--K--K-NPDVGFSDYQQATARQYNRLVKQMKPDMSKYEEQKKKLG-PAFYGDQKTILQGLHSDRPEAVDK  174 (236)
Q Consensus       101 ee~E~w~kK--k--K-~~~~g~~~~~~~a~~~Y~K~~~~lk~d~e~Y~kqK~~~g-~~fy~~~~s~~~~~~kps~eavdr  174 (236)
                      +++++|+++  +  + +++.||++|...+.++|.++++.++||++.|.++++.+| ..||++++++++++|+||+++||+
T Consensus        87 ~~ser~~k~~~kk~k~n~~~~fs~Y~~qt~~qynR~~~a~~~D~e~y~k~kE~~g~~~~~~~a~~~l~~t~k~~~~~idK  166 (228)
T KOG2609|consen   87 EDSERWEKKYDKKRKLNQDLGFSDYAAQTLRQYNRLTAADPPDLEKYEKVKERLGSEAFYPTATTLLHGTHKPDTEAIDK  166 (228)
T ss_pred             HHHHHHHHhhhcccccchhhhhhHHHHHHHHHHhhhhhccchhhhhHHHHHHhhchhhhcccchhhcccCCCCCHHHHHH
Confidence            999999982  2  2 788899999999999999999999999999999999998 779999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhhhhhCCCCCCCCcccchhhHHHHHHHHHHhhhhhHHHHhhhhcccCC
Q psy15690        175 MVEDLEKQISKREKYSRRRTHNDDADIDYINERNMKFNKKLERFYGEHTAEIKQNLERGTAI  236 (236)
Q Consensus       175 Lv~~L~k~~~kR~k~sRRR~~~dd~dv~YINerNk~FN~KL~R~y~kyT~EIk~nlERGTAl  236 (236)
                      ||.+|.+|+++|.+|||||++++++|||||||||++||+||+|||+|||.|||+||||||||
T Consensus       167 l~~~L~~q~kkR~k~srRR~~n~d~~idfINerN~kFNkKl~R~ysKyT~eIK~nLERGTAl  228 (228)
T KOG2609|consen  167 LVKDLEKQIKKRYKYSRRRMYNEDADIDFINERNKKFNKKLERFYSKYTEEIKQNLERGTAL  228 (228)
T ss_pred             HHHHHHHHHHHHHHHHHhccCCcccchhHHHHhHHHHHHHHHHHHhhhhHHHHHHHhccccC
Confidence            99999999999999999999999999999999999999999999999999999999999997

>PF08231 SYF2: SYF2 splicing factor; InterPro: IPR013260 Proteins in this entry are involved in cell cycle progression and pre-mRNA splicing [, ]

Probab=100.00  E-value=4.1e-54  Score=357.12  Aligned_cols=148  Identities=64%  Similarity=0.991  Sum_probs=141.0

Q ss_pred             HhhCCCHHHHHHhhhhHHHHHHHHhh--cc-CC-CCCcchHHHHH-HHHHHHhhhhcCCChHHhHHHHhhcCCCCcCCcc
Q psy15690         84 LEEGEDYERVKMLNMTVAEAEKFNKK--KK-NP-DVGFSDYQQAT-ARQYNRLVKQMKPDMSKYEEQKKKLGPAFYGDQK  158 (236)
Q Consensus        84 ~~~g~D~er~k~l~~t~ee~E~w~kK--kK-~~-~~g~~~~~~~a-~~~Y~K~~~~lk~d~e~Y~kqK~~~g~~fy~~~~  158 (236)
                      ++.|+|++|.++|+|||+++|+|++|  +| ++ ++||++|+++| +++|+|+|++|+||++.|+++++.+|..||++++
T Consensus         1 e~~g~D~er~k~l~~t~~e~E~w~~K~~kk~~~~~~g~~~~~~~a~~~~Y~K~~~~l~~d~e~Y~~~k~~~~~~fy~~~~   80 (153)
T PF08231_consen    1 EEKGEDYERKKLLNYTAEEAEKWEKKKKKKKKNKDFGFSDYNQDALYRQYKKRIKNLKPDMEEYEKQKEKLGEKFYRDAD   80 (153)
T ss_pred             CCccccHHHHHHHHhhHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHHHHHHhccCCHHHHHHHHHhccccccCCCc
Confidence            36899999999999999999999983  22 33 68999999999 9999999999999999999999999999999999


Q ss_pred             ccccccCCCCHHHHHHHHHHHHHHHHHHHhhhhhhCCCCCCCCcccchhhHHHHHHHHHHhhhhhHHHHhhhh
Q psy15690        159 TILQGLHSDRPEAVDKMVEDLEKQISKREKYSRRRTHNDDADIDYINERNMKFNKKLERFYGEHTAEIKQNLE  231 (236)
Q Consensus       159 s~~~~~~kps~eavdrLv~~L~k~~~kR~k~sRRR~~~dd~dv~YINerNk~FN~KL~R~y~kyT~EIk~nlE  231 (236)
                      ++++|+|+|++++||+||++|++++++|.+|||||.+++++||+|||+||++||+||+||||+||+|||+|||
T Consensus        81 ~l~~~~~~~~~e~vdrlv~~l~k~~~kR~k~sRrR~~~d~~dv~YINerNk~FN~KL~R~y~kyT~eIk~nlE  153 (153)
T PF08231_consen   81 SLVYGSHKPSPEAVDRLVNDLEKQIEKRKKFSRRRKFDDDADVDYINERNKQFNKKLERFYDKYTAEIKQNLE  153 (153)
T ss_pred             ccccCCCCCCHHHHHHHHHHHHHHHHHHHHHhHhcccccCCCcCchhhhhHHHHHHHHHHHhHhHHHHHHhcC
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999998

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	236
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-05
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	2e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 45.2 bits (106), Expect = 1e-05
 Identities = 41/258 (15%), Positives = 80/258 (31%), Gaps = 65/258 (25%)

Query: 8   YTLDMEAEQKNLT-------FQEKHAERLKRLKEIHLKRNESRQ-LNHQEVVEEDRRKQL 59
           + +D E  +           F++   +     K++   ++  +  L+ +E+   D     
Sbjct: 5   HHMDFETGEHQYQYKDILSVFEDAFVDNFD-CKDV---QDMPKSILSKEEI---DHIIMS 57

Query: 60  PNNWEARKRKAEWIL--KDEEQRQKALEEG--EDYERVKMLNMTVAEAEKFNKKKKNPDV 115
            +   +   +  W L  K EE  QK +EE    +Y+ +               +++ P +
Sbjct: 58  KDA-VSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFL---------MSPIKTEQRQPSM 107

Query: 116 GFSDYQQATARQYN---RLVKQMKPDMSKYEEQKKKL-------GPAFYGDQ---KTILQ 162
               Y +   R YN      K     +  Y + ++ L            G     KT + 
Sbjct: 108 MTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVA 167

Query: 163 GL---------------------HSDRPEAVDKMVEDLEKQISKREKYSRRRTHNDDADI 201
                                  + + PE V +M++ L  QI          + N    I
Sbjct: 168 LDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRI 227

Query: 202 DYINE--RNMKFNKKLER 217
             I    R +  +K  E 
Sbjct: 228 HSIQAELRRLLKSKPYEN 245

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 40.9 bits (96), Expect = 2e-04
 Identities = 29/223 (13%), Positives = 82/223 (36%), Gaps = 26/223 (11%)

Query: 12   MEAEQKNLTFQEKHAERLKRLKEIHLKRNESRQLNHQEVVEEDRRKQLPNNWEARKRKAE 71
                + +     K    L+      + + E ++L  +     +R K+L    E +  + +
Sbjct: 876  GWLARVHYHRTLKAIVYLQCCYRRMMAKRELKKLKIEAR-SVERYKKLHIGLENKIMQLQ 934

Query: 72   WILKDEEQRQKALEEGEDYERVKMLNMTVAEAEKFNKKKKNPDVGFSDYQQATAR--QYN 129
              + ++ +  K+L E    +   +      E EK     +   +   + + AT R     
Sbjct: 935  RKIDEQNKEYKSLLE----KMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQ 990

Query: 130  RLVKQMKPDMSKYEEQKKKLGPAFYGDQKTILQGLHSDRPEAVDKMVEDLEKQISKREKY 189
              + +++ ++ + + +KK +                    E  DK   + E+ +S+ ++ 
Sbjct: 991  EEIAKLRKELHQTQTEKKTIE-------------------EWADKYKHETEQLVSELKEQ 1031

Query: 190  SRRRTHNDDADIDYINERNMKFNKKLERFYGEHTAEIKQNLER 232
            +       +     I+++  +  + +E+   E T +++ +L  
Sbjct: 1032 NTLLKTEKEELNRRIHDQAKEITETMEKKLVEETKQLELDLND 1074

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00