Psyllid ID: psy15694

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80-
Protein Sequence
MNDDYDDEQTHRWDQDMVDVDSDGGDDPMENPQEVLNECLEKFSTPDYIMEPGIFSQLKRYFQAGGNPEQVIELMIIDNMA
Secondary Structure (PSIPRED)
cccccHHHcccccccccccccccccccccccHHHHHHHHHHHcccccccccHHHHHHHHHHHHccccHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccccccHHHHHHHHHHHcccccHccccHHHHHHHHHHHccccHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
mnddyddeqthrwdqdmvdvdsdggddpmenpQEVLNECLekfstpdyimepgiFSQLKRYfqaggnpeQVIELMIIDNMA
Flexible Loop (DISEMBL)
mnddyddeqthrwdqdmvDVDSDGGDDPMENPQEVLNECLEKFSTPDYIMEPGIFSQLKRYFQAGGNPEQVIELMIIDNMA
Low Complexity Region (SEG)
MNDDYDDEQTHRWdqdmvdvdsdggddPMENPQEVLNECLEKFSTPDYIMEPGIFSQLKRYFQAGGNPEQVIELMIIDNMA
Disordered region (IsUnstruct)
************************************NECLEKFSTPDYIMEPGIFSQLKRYFQAGGNPEQVIELMII****
Disordered Region (DISOPRED)
****YDD**************************EVLNECLEKFSTPDYIMEPGIFSQLKRYFQAGGNPEQVIELMIID***
Disordered Region (DISEMBL)
**********HRWDQDMVDVDSDGGDDPMENPQEVLNECLEKFSTPDYIMEPGIFSQLKRYFQAGGNPEQVIELMIIDNMA
Disordered Region (DISPRO)
*****************************ENPQEVLNECLEKFSTPDYIMEPGIFSQLKRYFQAGGNPEQVIELMIIDNMA
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MNDDYDDEQTHRWDQDMVDVDSDGGDDPMENPQEVLNECLEKFSTPDYIMEPGIFSQLKRYFQAGGNPEQVIELMIIDNMA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	81	2.2.26 [Sep-21-2011]
Q24134	578	Negative elongation facto	yes	N/A	0.666	0.093	0.620	1e-15
Q5RFA0	590	Negative elongation facto	yes	N/A	0.901	0.123	0.513	1e-12
Q8IXH7	590	Negative elongation facto	yes	N/A	0.901	0.123	0.513	1e-12
A5GFY4	590	Negative elongation facto	yes	N/A	0.679	0.093	0.616	1e-12
Q922L6	591	Negative elongation facto	yes	N/A	0.679	0.093	0.606	2e-12

>sp|Q24134|NELFD_DROME Negative elongation factor D OS=Drosophila melanogaster GN=TH1 PE=1 SV=2

 Score = 81.6 bits (200), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 36/58 (62%), Positives = 46/58 (79%), Gaps = 4/58 (6%)

Query: 22 SDGGDDPME----NPQEVLNECLEKFSTPDYIMEPGIFSQLKRYFQAGGNPEQVIELM 75
          + G  +P E    NPQ+ + ECLEKF TPDYIMEPGIF+QLKRYFQ+GG+PE+VI ++
Sbjct: 14 AKGQTNPEETLEDNPQKTIQECLEKFLTPDYIMEPGIFTQLKRYFQSGGSPEEVISML 71

Essential component of the NELF complex, a complex that negatively regulates the elongation of transcription by RNA polymerase II by RNA polymerase II. The NELF complex, which acts via an association with the DSIF complex, causes transcriptional pausing.
Drosophila melanogaster (taxid: 7227)

>sp|Q5RFA0|NELFD_PONAB Negative elongation factor D OS=Pongo abelii GN=TH1L PE=2 SV=1

 Score = 72.0 bits (175), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 39/76 (51%), Positives = 49/76 (64%), Gaps = 3/76 (3%)

Query: 1  MNDDYDDEQTHRWDQ-DMVDVDSDGGDDPMENPQEVLNECLEKFSTPDYIMEPGIFSQLK 59
          M++DY        D+ D    + D G+   E+  EV  ECL KFST DYIMEP IF+ LK
Sbjct: 10 MDEDYYGSAAEWGDEADGGQQEDDSGEG--EDDAEVQQECLHKFSTRDYIMEPSIFNTLK 67

Query: 60 RYFQAGGNPEQVIELM 75
          RYFQAGG+PE VI+L+
Sbjct: 68 RYFQAGGSPENVIQLL 83

Essential component of the NELF complex, a complex that negatively regulates the elongation of transcription by RNA polymerase II. The NELF complex, which acts via an association with the DSIF complex and causes transcriptional pausing, is counteracted by the P-TEFb kinase complex.

Pongo abelii (taxid: 9601)

>sp|Q8IXH7|NELFD_HUMAN Negative elongation factor C/D OS=Homo sapiens GN=TH1L PE=1 SV=2

 Score = 72.0 bits (175), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 39/76 (51%), Positives = 49/76 (64%), Gaps = 3/76 (3%)

Query: 1  MNDDYDDEQTHRWDQ-DMVDVDSDGGDDPMENPQEVLNECLEKFSTPDYIMEPGIFSQLK 59
          M++DY        D+ D    + D G+   E+  EV  ECL KFST DYIMEP IF+ LK
Sbjct: 10 MDEDYYGSAAEWGDEADGGQQEDDSGEG--EDDAEVQQECLHKFSTRDYIMEPSIFNTLK 67

Query: 60 RYFQAGGNPEQVIELM 75
          RYFQAGG+PE VI+L+
Sbjct: 68 RYFQAGGSPENVIQLL 83

Essential component of the NELF complex, a complex that negatively regulates the elongation of transcription by RNA polymerase II. The NELF complex, which acts via an association with the DSIF complex and causes transcriptional pausing, is counteracted by the P-TEFb kinase complex.

Homo sapiens (taxid: 9606)

>sp|A5GFY4|NELFD_PIG Negative elongation factor D OS=Sus scrofa GN=TH1L PE=2 SV=1

 Score = 71.6 bits (174), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 37/60 (61%), Positives = 44/60 (73%), Gaps = 5/60 (8%)

Query: 21 DSDGG---DD--PMENPQEVLNECLEKFSTPDYIMEPGIFSQLKRYFQAGGNPEQVIELM 75
          ++DGG   DD    E+  EV  ECL KFST DYIMEP IF+ LKRYFQAGG+PE VI+L+
Sbjct: 24 EADGGQQEDDYGEGEDDAEVQQECLHKFSTRDYIMEPSIFNTLKRYFQAGGSPENVIQLL 83

Essential component of the NELF complex, a complex that negatively regulates the elongation of transcription by RNA polymerase II. The NELF complex, which acts via an association with the DSIF complex and causes transcriptional pausing, is counteracted by the P-TEFb kinase complex.

Sus scrofa (taxid: 9823)

>sp|Q922L6|NELFD_MOUSE Negative elongation factor D OS=Mus musculus GN=Th1l PE=2 SV=2

 Score = 71.2 bits (173), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 37/61 (60%), Positives = 44/61 (72%), Gaps = 6/61 (9%)

Query: 21 DSDGG----DDPME--NPQEVLNECLEKFSTPDYIMEPGIFSQLKRYFQAGGNPEQVIEL 74
          ++DGG    DD  E  +  EV  ECL KFST DYIMEP IF+ LKRYFQAGG+PE VI+L
Sbjct: 24 EADGGQHQEDDSGEGEDDAEVQQECLHKFSTRDYIMEPSIFNTLKRYFQAGGSPENVIQL 83

Query: 75 M 75
          +
Sbjct: 84 L 84

Essential component of the NELF complex, a complex that negatively regulates the elongation of transcription by RNA polymerase II. The NELF complex, which acts via an association with the DSIF complex and causes transcriptional pausing, is counteracted by the P-TEFb kinase complex.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	81
307184650	579	Negative elongation factor D [Camponotus	0.913	0.127	0.666	7e-23
380011013	580	PREDICTED: negative elongation factor D-	0.913	0.127	0.64	2e-22
328716546	574	PREDICTED: negative elongation factor D-	0.888	0.125	0.68	4e-22
340722089	580	PREDICTED: LOW QUALITY PROTEIN: negative	0.913	0.127	0.64	4e-22
350420164	580	PREDICTED: negative elongation factor D-	0.913	0.127	0.64	9e-22
332021804	587	Negative elongation factor D [Acromyrmex	0.925	0.127	0.653	2e-21
307208263	582	Negative elongation factor D [Harpegnath	0.888	0.123	0.666	5e-21
383864711	226	PREDICTED: negative elongation factor D-	0.925	0.331	0.64	5e-21
322786011	329	hypothetical protein SINV_15376 [Solenop	0.925	0.227	0.653	5e-21
193211439	580	negative elongation factor D [Nasonia vi	0.901	0.125	0.64	2e-19

>gi|307184650|gb|EFN70979.1| Negative elongation factor D [Camponotus floridanus]

 Score =  111 bits (277), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 50/75 (66%), Positives = 60/75 (80%), Gaps = 1/75 (1%)

Query: 1  MNDDYDDEQTHRWDQDMVDVDSDGGDDPMENPQEVLNECLEKFSTPDYIMEPGIFSQLKR 60
          M  DYD++++  W  +M   D   G+D  +NPQEVLNECL+KF TPDYIMEPGIF+QLKR
Sbjct: 1  MESDYDEDRSG-WGDEMNRSDDCSGEDTFDNPQEVLNECLDKFKTPDYIMEPGIFAQLKR 59

Query: 61 YFQAGGNPEQVIELM 75
          YFQAGGNPEQVIEL+
Sbjct: 60 YFQAGGNPEQVIELL 74

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380011013|ref|XP_003689608.1| PREDICTED: negative elongation factor D-like [Apis florea]

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 48/75 (64%), Positives = 60/75 (80%), Gaps = 1/75 (1%)

Query: 1  MNDDYDDEQTHRWDQDMVDVDSDGGDDPMENPQEVLNECLEKFSTPDYIMEPGIFSQLKR 60
          M  DYD+++   W ++M   +   G+D  +NPQE+LNECL+KF TPDYIMEPGIF+QLKR
Sbjct: 1  MESDYDEDRG-TWTEEMTRTEDCSGEDNFDNPQEILNECLDKFKTPDYIMEPGIFAQLKR 59

Query: 61 YFQAGGNPEQVIELM 75
          YFQAGGNPEQVIEL+
Sbjct: 60 YFQAGGNPEQVIELL 74

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328716546|ref|XP_001944110.2| PREDICTED: negative elongation factor D-like [Acyrthosiphon pisum]

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 51/75 (68%), Positives = 60/75 (80%), Gaps = 3/75 (4%)

Query: 1  MNDDYDDEQTHRWDQDMVDVDSDGGDDPMENPQEVLNECLEKFSTPDYIMEPGIFSQLKR 60
          M DDYD+ +  RWD D VDV++D  DD +ENP+E L +CLEKFS+ DYIMEPGIFSQLKR
Sbjct: 1  MEDDYDEYR--RWDGD-VDVEADDNDDILENPEETLTQCLEKFSSADYIMEPGIFSQLKR 57

Query: 61 YFQAGGNPEQVIELM 75
          YFQ GG PE VIEL+
Sbjct: 58 YFQVGGTPEHVIELL 72

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340722089|ref|XP_003399442.1| PREDICTED: LOW QUALITY PROTEIN: negative elongation factor D-like [Bombus terrestris]

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 48/75 (64%), Positives = 60/75 (80%), Gaps = 1/75 (1%)

Query: 1  MNDDYDDEQTHRWDQDMVDVDSDGGDDPMENPQEVLNECLEKFSTPDYIMEPGIFSQLKR 60
          M  DYD+++   W ++M   +   G+D  +NPQE+LNECL+KF TPDYIMEPGIF+QLKR
Sbjct: 1  MESDYDEDRG-AWTEEMTRSEDCLGEDSFDNPQEILNECLDKFKTPDYIMEPGIFAQLKR 59

Query: 61 YFQAGGNPEQVIELM 75
          YFQAGGNPEQVIEL+
Sbjct: 60 YFQAGGNPEQVIELL 74

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350420164|ref|XP_003492420.1| PREDICTED: negative elongation factor D-like isoform 1 [Bombus impatiens] gi|350420167|ref|XP_003492421.1| PREDICTED: negative elongation factor D-like isoform 2 [Bombus impatiens]

 Score =  107 bits (267), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 48/75 (64%), Positives = 60/75 (80%), Gaps = 1/75 (1%)

Query: 1  MNDDYDDEQTHRWDQDMVDVDSDGGDDPMENPQEVLNECLEKFSTPDYIMEPGIFSQLKR 60
          M  DYD+++   W ++M   +   G+D  +NPQE+LNECL+KF TPDYIMEPGIF+QLKR
Sbjct: 1  MEMDYDEDRG-AWTEEMTRSEECIGEDSFDNPQEILNECLDKFKTPDYIMEPGIFAQLKR 59

Query: 61 YFQAGGNPEQVIELM 75
          YFQAGGNPEQVIEL+
Sbjct: 60 YFQAGGNPEQVIELL 74

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332021804|gb|EGI62150.1| Negative elongation factor D [Acromyrmex echinatior]

 Score =  105 bits (263), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 49/75 (65%), Positives = 55/75 (73%)

Query: 1  MNDDYDDEQTHRWDQDMVDVDSDGGDDPMENPQEVLNECLEKFSTPDYIMEPGIFSQLKR 60
          M  DYDD+     D+     D   G+D  +NPQEVLNECL+KF T DYIMEPGIF QLKR
Sbjct: 7  METDYDDDHGGWRDERNRSTDEYSGEDTFDNPQEVLNECLDKFKTADYIMEPGIFVQLKR 66

Query: 61 YFQAGGNPEQVIELM 75
          YFQAGGNPEQVIEL+
Sbjct: 67 YFQAGGNPEQVIELL 81

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307208263|gb|EFN85695.1| Negative elongation factor D [Harpegnathos saltator]

 Score =  105 bits (261), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 48/72 (66%), Positives = 58/72 (80%)

Query: 4  DYDDEQTHRWDQDMVDVDSDGGDDPMENPQEVLNECLEKFSTPDYIMEPGIFSQLKRYFQ 63
          DYD++++   D+   + D  G +D  ENP+EVLNECL+KF TPDYIMEPGIF QLKRYFQ
Sbjct: 5  DYDEDRSSWRDEIGRNSDEGGSEDVPENPKEVLNECLDKFKTPDYIMEPGIFVQLKRYFQ 64

Query: 64 AGGNPEQVIELM 75
          AGGNPEQVIEL+
Sbjct: 65 AGGNPEQVIELL 76

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383864711|ref|XP_003707821.1| PREDICTED: negative elongation factor D-like [Megachile rotundata]

 Score =  105 bits (261), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 48/75 (64%), Positives = 57/75 (76%)

Query: 1  MNDDYDDEQTHRWDQDMVDVDSDGGDDPMENPQEVLNECLEKFSTPDYIMEPGIFSQLKR 60
          M  DY D+ +   D+     +  GG+D  +NPQE+LNECL KF TPDYIMEPGIF+QLKR
Sbjct: 1  MEPDYSDDHSGWTDEITRTAEDGGGEDSFDNPQEILNECLNKFKTPDYIMEPGIFTQLKR 60

Query: 61 YFQAGGNPEQVIELM 75
          YFQAGGNPEQVIEL+
Sbjct: 61 YFQAGGNPEQVIELL 75

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322786011|gb|EFZ12627.1| hypothetical protein SINV_15376 [Solenopsis invicta]

 Score =  105 bits (261), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 49/75 (65%), Positives = 59/75 (78%)

Query: 1  MNDDYDDEQTHRWDQDMVDVDSDGGDDPMENPQEVLNECLEKFSTPDYIMEPGIFSQLKR 60
          M  DYDD+++   D+    +D   G+D  +NPQEVLNECL+KF T DYIMEPGIF+QLKR
Sbjct: 1  MESDYDDDRSGWGDEMNRSIDECSGEDTFDNPQEVLNECLDKFKTADYIMEPGIFAQLKR 60

Query: 61 YFQAGGNPEQVIELM 75
          YFQAGGNPEQVIEL+
Sbjct: 61 YFQAGGNPEQVIELL 75

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|193211439|ref|NP_001123224.1| negative elongation factor D [Nasonia vitripennis]

 Score = 99.4 bits (246), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 48/75 (64%), Positives = 59/75 (78%), Gaps = 2/75 (2%)

Query: 1  MNDDYDDEQTHRWDQDMVDVDSDGGDDPMENPQEVLNECLEKFSTPDYIMEPGIFSQLKR 60
          M   + +E ++ W+ DM   D   G+DP ENPQ+VL ECL+KF+TPDYIMEPGIF+QLKR
Sbjct: 1  MEPSFGEEHSN-WE-DMNRGDDISGEDPSENPQQVLKECLDKFNTPDYIMEPGIFTQLKR 58

Query: 61 YFQAGGNPEQVIELM 75
          YFQAGGNPE VIEL+
Sbjct: 59 YFQAGGNPETVIELL 73

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	81
FB|FBgn0010416	578	TH1 "TH1" [Drosophila melanoga	0.567	0.079	0.717	1.5e-14
UNIPROTKB|Q5ZIQ8	583	TH1L "Uncharacterized protein"	0.888	0.123	0.5	8.1e-13
UNIPROTKB|F1NR08	602	TH1L "Uncharacterized protein"	0.888	0.119	0.5	8.5e-13
UNIPROTKB|A5GFY5	291	TH1L "Negative elongation fact	0.567	0.158	0.695	2.2e-12
UNIPROTKB|Q8IXH7	590	NELFCD "Negative elongation fa	0.913	0.125	0.48	7.7e-12
UNIPROTKB|A5GFY4	590	TH1L "Negative elongation fact	0.913	0.125	0.48	9.8e-12
UNIPROTKB|F1PIH1	564	TH1L "Uncharacterized protein"	0.567	0.081	0.695	1.2e-11
MGI|MGI:1926424	591	Nelfcd "negative elongation fa	0.567	0.077	0.695	1.3e-11
UNIPROTKB|F1MW69	600	TH1L "Uncharacterized protein"	0.567	0.076	0.695	1.3e-11
ZFIN|ZDB-GENE-040426-720	579	nelfcd "negative elongation fa	0.518	0.072	0.619	2.8e-09

FB|FBgn0010416 TH1 "TH1" [Drosophila melanogaster (taxid:7227)]

 Score = 195 (73.7 bits), Expect = 1.5e-14, P = 1.5e-14
 Identities = 33/46 (71%), Positives = 42/46 (91%)

Query:    30 ENPQEVLNECLEKFSTPDYIMEPGIFSQLKRYFQAGGNPEQVIELM 75
             +NPQ+ + ECLEKF TPDYIMEPGIF+QLKRYFQ+GG+PE+VI ++
Sbjct:    26 DNPQKTIQECLEKFLTPDYIMEPGIFTQLKRYFQSGGSPEEVISML 71

GO:0003729 "mRNA binding" evidence=IDA

GO:0017053 "transcriptional repressor complex" evidence=IDA

GO:0007070 "negative regulation of transcription from RNA polymerase II promoter during mitosis" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0032021 "NELF complex" evidence=IPI

GO:0034244 "negative regulation of transcription elongation from RNA polymerase II promoter" evidence=IDA

GO:0022008 "neurogenesis" evidence=IMP

UNIPROTKB|Q5ZIQ8 TH1L "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 179 (68.1 bits), Expect = 8.1e-13, P = 8.1e-13
 Identities = 36/72 (50%), Positives = 43/72 (59%)

Query:     4 DYDDEQTHRWXXXXXXXXXXXXXXPMENPQEVLNECLEKFSTPDYIMEPGIFSQLKRYFQ 63
             DY +     W                E+  EV  ECL+KFSTPDYIMEP IF+ LKRYFQ
Sbjct:     5 DYFEGGAAEWGNEADGGAQDDEDGEGEDDAEVQQECLKKFSTPDYIMEPSIFNTLKRYFQ 64

Query:    64 AGGNPEQVIELM 75
             AGG+PE VI+L+
Sbjct:    65 AGGSPENVIQLL 76

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IEA

GO:0032021 "NELF complex" evidence=IEA

UNIPROTKB|F1NR08 TH1L "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 179 (68.1 bits), Expect = 8.5e-13, P = 8.5e-13
 Identities = 36/72 (50%), Positives = 43/72 (59%)

Query:     4 DYDDEQTHRWXXXXXXXXXXXXXXPMENPQEVLNECLEKFSTPDYIMEPGIFSQLKRYFQ 63
             DY +     W                E+  EV  ECL+KFSTPDYIMEP IF+ LKRYFQ
Sbjct:    24 DYFEGGAAEWGNEADGGAQDDEDGEGEDDAEVQQECLKKFSTPDYIMEPSIFNTLKRYFQ 83

Query:    64 AGGNPEQVIELM 75
             AGG+PE VI+L+
Sbjct:    84 AGGSPENVIQLL 95

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IEA

GO:0032021 "NELF complex" evidence=IEA

UNIPROTKB|A5GFY5 TH1L "Negative elongation factor D" [Sus scrofa (taxid:9823)]

 Score = 168 (64.2 bits), Expect = 2.2e-12, P = 2.2e-12
 Identities = 32/46 (69%), Positives = 37/46 (80%)

Query:    30 ENPQEVLNECLEKFSTPDYIMEPGIFSQLKRYFQAGGNPEQVIELM 75
             E+  EV  ECL KFST DYIMEP IF+ LKRYFQAGG+PE VI+L+
Sbjct:    22 EDDAEVQQECLHKFSTRDYIMEPSIFNTLKRYFQAGGSPENVIQLL 67

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|Q8IXH7 NELFCD "Negative elongation factor C/D" [Homo sapiens (taxid:9606)]

 Score = 170 (64.9 bits), Expect = 7.7e-12, P = 7.7e-12
 Identities = 36/75 (48%), Positives = 43/75 (57%)

Query:     1 MNDDYDDEQTHRWXXXXXXXXXXXXXXPMENPQEVLNECLEKFSTPDYIMEPGIFSQLKR 60
             M++DY       W                E+  EV  ECL KFST DYIMEP IF+ LKR
Sbjct:    10 MDEDYYGSAAE-WGDEADGGQQEDDSGEGEDDAEVQQECLHKFSTRDYIMEPSIFNTLKR 68

Query:    61 YFQAGGNPEQVIELM 75
             YFQAGG+PE VI+L+
Sbjct:    69 YFQAGGSPENVIQLL 83

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IEA

GO:0032021 "NELF complex" evidence=IDA

GO:0005654 "nucleoplasm" evidence=TAS

GO:0006366 "transcription from RNA polymerase II promoter" evidence=TAS

GO:0006368 "transcription elongation from RNA polymerase II promoter" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0016032 "viral reproduction" evidence=TAS

GO:0050434 "positive regulation of viral transcription" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|A5GFY4 TH1L "Negative elongation factor D" [Sus scrofa (taxid:9823)]

 Score = 169 (64.5 bits), Expect = 9.8e-12, P = 9.8e-12
 Identities = 36/75 (48%), Positives = 43/75 (57%)

Query:     1 MNDDYDDEQTHRWXXXXXXXXXXXXXXPMENPQEVLNECLEKFSTPDYIMEPGIFSQLKR 60
             M++DY       W                E+  EV  ECL KFST DYIMEP IF+ LKR
Sbjct:    10 MDEDYFGSAAE-WGDEADGGQQEDDYGEGEDDAEVQQECLHKFSTRDYIMEPSIFNTLKR 68

Query:    61 YFQAGGNPEQVIELM 75
             YFQAGG+PE VI+L+
Sbjct:    69 YFQAGGSPENVIQLL 83

GO:0032021 "NELF complex" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IEA

UNIPROTKB|F1PIH1 TH1L "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 168 (64.2 bits), Expect = 1.2e-11, P = 1.2e-11
 Identities = 32/46 (69%), Positives = 37/46 (80%)

Query:    30 ENPQEVLNECLEKFSTPDYIMEPGIFSQLKRYFQAGGNPEQVIELM 75
             E+  EV  ECL KFST DYIMEP IF+ LKRYFQAGG+PE VI+L+
Sbjct:    10 EDDAEVQQECLHKFSTRDYIMEPSIFNTLKRYFQAGGSPENVIQLL 55

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

MGI|MGI:1926424 Nelfcd "negative elongation factor complex member C/D, Th1l" [Mus musculus (taxid:10090)]

 Score = 168 (64.2 bits), Expect = 1.3e-11, P = 1.3e-11
 Identities = 32/46 (69%), Positives = 37/46 (80%)

Query:    30 ENPQEVLNECLEKFSTPDYIMEPGIFSQLKRYFQAGGNPEQVIELM 75
             E+  EV  ECL KFST DYIMEP IF+ LKRYFQAGG+PE VI+L+
Sbjct:    39 EDDAEVQQECLHKFSTRDYIMEPSIFNTLKRYFQAGGSPENVIQLL 84

GO:0005634 "nucleus" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0032021 "NELF complex" evidence=ISO

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IEA

UNIPROTKB|F1MW69 TH1L "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 168 (64.2 bits), Expect = 1.3e-11, P = 1.3e-11
 Identities = 32/46 (69%), Positives = 37/46 (80%)

Query:    30 ENPQEVLNECLEKFSTPDYIMEPGIFSQLKRYFQAGGNPEQVIELM 75
             E+  EV  ECL KFST DYIMEP IF+ LKRYFQAGG+PE VI+L+
Sbjct:    48 EDDAEVQQECLHKFSTRDYIMEPSIFNTLKRYFQAGGSPENVIQLL 93

GO:0032021 "NELF complex" evidence=IEA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IEA

ZFIN|ZDB-GENE-040426-720 nelfcd "negative elongation factor complex member C/D" [Danio rerio (taxid:7955)]

 Score = 146 (56.5 bits), Expect = 2.8e-09, P = 2.8e-09
 Identities = 26/42 (61%), Positives = 35/42 (83%)

Query:    34 EVLNECLEKFSTPDYIMEPGIFSQLKRYFQAGGNPEQVIELM 75
             +V  +CL+KFS+ DYIMEP +F+ LK YFQAGG+PE VI+L+
Sbjct:    31 KVQEDCLQKFSSRDYIMEPTVFNTLKSYFQAGGSPEHVIQLL 72


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.317   0.136   0.417    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       81        67   0.00091  102 3  11 22  0.49    28
                                                     29  0.49    28


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  10
  No. of states in DFA:  504 (54 KB)
  Total size of DFA:  101 KB (2072 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  8.51u 0.08s 8.59t   Elapsed:  00:00:03
  Total cpu time:  8.51u 0.08s 8.59t   Elapsed:  00:00:03
  Start:  Thu Aug 15 14:05:58 2013   End:  Thu Aug 15 14:06:01 2013

GO:0005634 "nucleus" evidence=IEA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8IXH7	NELFD_HUMAN	No assigned EC number	0.5131	0.9012	0.1237	yes	N/A
Q922L6	NELFD_MOUSE	No assigned EC number	0.6065	0.6790	0.0930	yes	N/A
Q5RFA0	NELFD_PONAB	No assigned EC number	0.5131	0.9012	0.1237	yes	N/A
A5GFY4	NELFD_PIG	No assigned EC number	0.6166	0.6790	0.0932	yes	N/A
Q24134	NELFD_DROME	No assigned EC number	0.6206	0.6666	0.0934	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	81
pfam04858	582	pfam04858, TH1, TH1 protein	4e-24

>gnl|CDD|218295 pfam04858, TH1, TH1 protein

 Score = 93.4 bits (232), Expect = 4e-24
 Identities = 43/79 (54%), Positives = 48/79 (60%), Gaps = 6/79 (7%)

Query: 1  MNDDYDDEQTHRWDQDMVDV----DSDGGDDPMENPQEVLNECLEKFSTPDYIMEPGIFS 56
          M +DY  E T  WD+         D D   +  ENP  VL ECL +FST DYIMEP IF 
Sbjct: 1  MEEDY--EVTSGWDRSDGRGTAQGDDDARAEVDENPTAVLQECLRRFSTKDYIMEPSIFD 58

Query: 57 QLKRYFQAGGNPEQVIELM 75
           LKRYFQAGG PE VIEL+
Sbjct: 59 DLKRYFQAGGAPETVIELL 77

TH1 is a highly conserved but uncharacterized metazoan protein. No homologue has been identified in Caenorhabditis elegans. TH1 binds specifically to A-Raf kinase. Length = 582

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	81
PF04858	584	TH1: TH1 protein; InterPro: IPR006942 TH1 is a hig	99.9

>PF04858 TH1: TH1 protein; InterPro: IPR006942 TH1 is a highly conserved but uncharacterised metazoan protein

Probab=99.90  E-value=4.2e-24  Score=176.38  Aligned_cols=79  Identities=44%  Similarity=0.897  Sum_probs=66.7

Q ss_pred             CCCcccccccCCCcc---cCcC-CCCCCCCCCCCChHHHHHHHHHhcCCCCcccchhHHHHHHHHHHcCCCHHHHHHHHH
Q psy15694          1 MNDDYDDEQTHRWDQ---DMVD-VDSDGGDDPMENPQEVLNECLEKFSTPDYIMEPGIFSQLKRYFQAGGNPEQVIELMI   76 (81)
Q Consensus         1 Me~dyd~~~~~~W~~---~~~~-~~~~~~~~~~e~~~~vl~eCl~~fs~~DyIMEP~If~~lkrYfqaGG~PE~VI~lLS   76 (81)
                      |++||+..+  +|+.   +.+. +++++..+..+++++++++|+++|++|||||||+||.+||+||++||+|++||++||
T Consensus         1 ~~~~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~Imep~i~~~i~~y~~~gG~p~~vv~~Ls   78 (584)
T PF04858_consen    1 MEEDYEGDR--GWESSDGEGDDQEDDEEESEADEEPEEVLEECLRRLSQPDAIMEPSIFDTIKRYFRAGGDPEEVVELLS   78 (584)
T ss_pred             CCchhhhcc--ccccccCCCCcccCccccccCCCChHHHHHHHHHhcCCCCeeeCchHHHHHHHHHHCCCCHHHHHHHHH
Confidence            899999544  6953   3222 344445555779999999999999999999999999999999999999999999999


Q ss_pred             hhccC
Q psy15694         77 IDNMA   81 (81)
Q Consensus        77 eny~~   81 (81)
                      +||++
T Consensus        79 ~~Y~g   83 (584)
T PF04858_consen   79 ENYRG   83 (584)
T ss_pred             Hhccc
Confidence            99985

No homologue has been identified in Caenorhabditis elegans []. TH1 binds specifically to A-Raf kinase [].; GO: 0045892 negative regulation of transcription, DNA-dependent, 0005634 nucleus

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00