Psyllid ID: psy15696

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------
Protein Sequence
MNYDVIAYGSVCRDVKLHDLPNVSNGTIPYLGTFLTDLTMIDTAIPDTLPDGLINFDKKRKEFEVLAQ
Secondary Structure (PSIPRED)
ccHHHHHcccHHHHHHHcccccccccccccHHHHHHHHHHHHcccccccccccccHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
ccccEEHcccHHHHHHHcccccccccccccHHHHHHHHHHHHHHcccccccccEcHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
MNYDVIAygsvcrdvklhdlpnvsngtipylGTFLtdltmidtaipdtlpdglinfDKKRKEFEVLAQ
Flexible Loop (DISEMBL)
MNYDVIAYGSVCRDVKlhdlpnvsngtiPYLGTFLTDLTMIDTAIPDTLPDGLINFDKKRKEFEVLAQ
Low Complexity Region (SEG)
MNYDVIAYGSVCRDVKLHDLPNVSNGTIPYLGTFLTDLTMIDTAIPDTLPDGLINFDKKRKEFEVLAQ
Disordered region (IsUnstruct)
**YDVIAYGSVCRDVKLHDLPNVSNGTIPYLGTFLTDLTMIDTAIPDTLPDGLINFD***********
Disordered Region (DISOPRED)
***DVIA*GS***************GTIPYLGTFLTDLTMIDTAIPDTLPDGLINFDKKRKEFEVLAQ
Disordered Region (DISEMBL)
MNYDVIAYGSVCRDVKLHDLPNVSNGTIPYLGTFLTDLTMIDTAIPDTLPDGLINFDKKRKEFEVLAQ
Disordered Region (DISPRO)
*NYDVIAYGSVCRDVKLHDLPNVSNGTIPYLGTFLTDLTMIDTAIPDTLPDGLINFDKKRKEFEVLAQ
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MNYDVIAYGSVCRDVKLHDLPNVSNGTIPYLGTFLTDLTMIDTAIPDTLPDGLINFDKKRKEFEVLAQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	68	2.2.26 [Sep-21-2011]
Q6P112	804	Ral guanine nucleotide di	yes	N/A	0.632	0.053	0.767	1e-14
Q9NZL6	768	Ral guanine nucleotide di	yes	N/A	0.823	0.072	0.607	6e-14
Q60695	768	Ral guanine nucleotide di	yes	N/A	0.823	0.072	0.607	6e-14
Q3UYI5	709	Ral guanine nucleotide di	no	N/A	0.632	0.060	0.697	1e-12
Q03386	895	Ral guanine nucleotide di	no	N/A	0.676	0.051	0.695	3e-12
Q03385	852	Ral guanine nucleotide di	no	N/A	0.676	0.053	0.695	3e-12
Q12967	914	Ral guanine nucleotide di	no	N/A	0.676	0.050	0.673	5e-12
O15211	777	Ral guanine nucleotide di	no	N/A	0.632	0.055	0.627	4e-10
Q3MIN7	710	Ral guanine nucleotide di	no	N/A	0.573	0.054	0.692	4e-10
Q61193	778	Ral guanine nucleotide di	no	N/A	0.632	0.055	0.604	5e-10

>sp|Q6P112|RGL1_DANRE Ral guanine nucleotide dissociation stimulator-like 1 OS=Danio rerio GN=rgl1 PE=2 SV=1

 Score = 78.2 bits (191), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 33/43 (76%), Positives = 40/43 (93%)

Query: 26  GTIPYLGTFLTDLTMIDTAIPDTLPDGLINFDKKRKEFEVLAQ 68
           GTIPYLGTFLTDLTM+DTA+PD +  GLINF+K+R+EFEV+AQ
Sbjct: 453 GTIPYLGTFLTDLTMLDTALPDQVEGGLINFEKRRREFEVIAQ 495

Probable guanine nucleotide exchange factor.
Danio rerio (taxid: 7955)

>sp|Q9NZL6|RGL1_HUMAN Ral guanine nucleotide dissociation stimulator-like 1 OS=Homo sapiens GN=RGL1 PE=2 SV=1

 Score = 76.3 bits (186), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 34/56 (60%), Positives = 44/56 (78%)

Query: 13  RDVKLHDLPNVSNGTIPYLGTFLTDLTMIDTAIPDTLPDGLINFDKKRKEFEVLAQ 68
           R ++L     V  GT+PYLGTFLTDLTM+DTA+ D +  GLINF+K+R+EFEV+AQ
Sbjct: 402 RRLQLQKDMGVMQGTVPYLGTFLTDLTMLDTALQDYIEGGLINFEKRRREFEVIAQ 457

Probable guanine nucleotide exchange factor.

Homo sapiens (taxid: 9606)

>sp|Q60695|RGL1_MOUSE Ral guanine nucleotide dissociation stimulator-like 1 OS=Mus musculus GN=Rgl1 PE=1 SV=2

 Score = 75.9 bits (185), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 34/56 (60%), Positives = 44/56 (78%)

Query: 13  RDVKLHDLPNVSNGTIPYLGTFLTDLTMIDTAIPDTLPDGLINFDKKRKEFEVLAQ 68
           R ++L     V  GT+PYLGTFLTDLTM+DTA+ D +  GLINF+K+R+EFEV+AQ
Sbjct: 402 RRLQLQKDMGVMQGTVPYLGTFLTDLTMLDTALQDYIEGGLINFEKRRREFEVIAQ 457

Probable guanine nucleotide exchange factor.

Mus musculus (taxid: 10090)

>sp|Q3UYI5|RGL3_MOUSE Ral guanine nucleotide dissociation stimulator-like 3 OS=Mus musculus GN=Rgl3 PE=1 SV=2

 Score = 72.0 bits (175), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 30/43 (69%), Positives = 38/43 (88%)

Query: 26  GTIPYLGTFLTDLTMIDTAIPDTLPDGLINFDKKRKEFEVLAQ 68
           G +PYLGTFLTDL M+DTA+PDTL   LINF+K+RKE+E+LA+
Sbjct: 417 GPVPYLGTFLTDLVMLDTALPDTLKGNLINFEKRRKEWEILAR 459

Guanine nucleotide exchange factor (GEF) for Ral-A. Potential effector of GTPase HRas and Ras-related protein M-Ras. Negatively regulates Elk-1-dependent gene induction downstream of HRas and MEKK1.

Mus musculus (taxid: 10090)

>sp|Q03386|GNDS_RAT Ral guanine nucleotide dissociation stimulator OS=Rattus norvegicus GN=Ralgds PE=1 SV=1

 Score = 70.5 bits (171), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 32/46 (69%), Positives = 38/46 (82%)

Query: 23  VSNGTIPYLGTFLTDLTMIDTAIPDTLPDGLINFDKKRKEFEVLAQ 68
           V  GT+PYLGTFLTDL M+DTA+ D L   LINF+K+RKEFEV+AQ
Sbjct: 540 VIQGTVPYLGTFLTDLVMLDTAMKDYLYGRLINFEKRRKEFEVIAQ 585

Stimulates the dissociation of GDP from the Ras-related RalA and RalB GTPases which allows GTP binding and activation of the GTPases. Interacts and acts as an effector molecule for R-Ras, H-Ras, K-Ras, and Rap.

Rattus norvegicus (taxid: 10116)

>sp|Q03385|GNDS_MOUSE Ral guanine nucleotide dissociation stimulator OS=Mus musculus GN=Ralgds PE=1 SV=2

 Score = 70.5 bits (171), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 32/46 (69%), Positives = 38/46 (82%)

Query: 23  VSNGTIPYLGTFLTDLTMIDTAIPDTLPDGLINFDKKRKEFEVLAQ 68
           V  GT+PYLGTFLTDL M+DTA+ D L   LINF+K+RKEFEV+AQ
Sbjct: 497 VIQGTVPYLGTFLTDLVMLDTAMKDYLYGRLINFEKRRKEFEVIAQ 542

Stimulates the dissociation of GDP from the Ras-related RalA and RalB GTPases which allows GTP binding and activation of the GTPases. Interacts and acts as an effector molecule for R-Ras, H-Ras, K-Ras, and Rap.

Mus musculus (taxid: 10090)

>sp|Q12967|GNDS_HUMAN Ral guanine nucleotide dissociation stimulator OS=Homo sapiens GN=RALGDS PE=1 SV=2

 Score = 69.7 bits (169), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 31/46 (67%), Positives = 38/46 (82%)

Query: 23  VSNGTIPYLGTFLTDLTMIDTAIPDTLPDGLINFDKKRKEFEVLAQ 68
           +  GT+PYLGTFLTDL M+DTA+ D L   LINF+K+RKEFEV+AQ
Sbjct: 559 IIQGTVPYLGTFLTDLVMLDTAMKDYLYGRLINFEKRRKEFEVIAQ 604

Stimulates the dissociation of GDP from the Ras-related RalA and RalB GTPases which allows GTP binding and activation of the GTPases. Interacts and acts as an effector molecule for R-Ras, H-Ras, K-Ras, and Rap.

Homo sapiens (taxid: 9606)

>sp|O15211|RGL2_HUMAN Ral guanine nucleotide dissociation stimulator-like 2 OS=Homo sapiens GN=RGL2 PE=1 SV=1

 Score = 63.5 bits (153), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 27/43 (62%), Positives = 33/43 (76%)

Query: 26  GTIPYLGTFLTDLTMIDTAIPDTLPDGLINFDKKRKEFEVLAQ 68
           G +PYLGTFL DL M+D A  D L +G INFDK+RKEF VL++
Sbjct: 427 GVVPYLGTFLKDLVMLDAASKDELENGYINFDKRRKEFAVLSE 469

Probable guanine nucleotide exchange factor. Putative effector of Ras and/or Rap. Associates with the GTP-bound form of Rap 1A and H-Ras in vitro.

Homo sapiens (taxid: 9606)

>sp|Q3MIN7|RGL3_HUMAN Ral guanine nucleotide dissociation stimulator-like 3 OS=Homo sapiens GN=RGL3 PE=1 SV=2

 Score = 63.2 bits (152), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 27/39 (69%), Positives = 34/39 (87%)

Query: 30  YLGTFLTDLTMIDTAIPDTLPDGLINFDKKRKEFEVLAQ 68
           YLGTFLTDL M+DTA+PD L   LINF+K+RKE+E+LA+
Sbjct: 423 YLGTFLTDLVMLDTALPDMLEGDLINFEKRRKEWEILAR 461

Guanine nucleotide exchange factor (GEF) for Ral-A. Potential effector of GTPase HRas and Ras-related protein M-Ras. Negatively regulates Elk-1-dependent gene induction downstream of HRas and MEKK1.

Homo sapiens (taxid: 9606)

>sp|Q61193|RGL2_MOUSE Ral guanine nucleotide dissociation stimulator-like 2 OS=Mus musculus GN=Rgl2 PE=1 SV=2

 Score = 63.2 bits (152), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 26/43 (60%), Positives = 33/43 (76%)

Query: 26  GTIPYLGTFLTDLTMIDTAIPDTLPDGLINFDKKRKEFEVLAQ 68
           G +PYLGTFL DL M+D A  D L +G INFDK+RKEF +L++
Sbjct: 427 GVVPYLGTFLKDLVMLDAASKDELENGYINFDKRRKEFAILSE 469

Probable guanine nucleotide exchange factor. Putative effector of Ras and/or Rap. Associates with the GTP-bound form of Rap 1A and H-Ras in vitro.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	68
332021945	703	Ral guanine nucleotide dissociation stim	0.691	0.066	0.872	4e-17
307173068	766	Ral guanine nucleotide dissociation stim	0.691	0.061	0.872	5e-17
307192833	773	Ral guanine nucleotide dissociation stim	0.691	0.060	0.872	6e-17
270004403	758	hypothetical protein TcasGA2_TC003754 [T	0.75	0.067	0.823	6e-17
322786104	668	hypothetical protein SINV_07892 [Solenop	0.691	0.070	0.872	6e-17
189235637	696	PREDICTED: similar to ral guanine nucleo	0.75	0.073	0.823	7e-17
321470865	781	hypothetical protein DAPPUDRAFT_49847 [D	0.676	0.058	0.869	8e-17
242013894	523	ral guanine nucleotide exchange factor,	0.779	0.101	0.773	9e-17
350404678	838	PREDICTED: ral guanine nucleotide dissoc	0.691	0.056	0.851	1e-16
345495570	746	PREDICTED: ral guanine nucleotide dissoc	0.691	0.063	0.851	1e-16

>gi|332021945|gb|EGI62275.1| Ral guanine nucleotide dissociation stimulator-like 1 [Acromyrmex echinatior]

 Score = 92.0 bits (227), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 41/47 (87%), Positives = 45/47 (95%)

Query: 22  NVSNGTIPYLGTFLTDLTMIDTAIPDTLPDGLINFDKKRKEFEVLAQ 68
           N+S GTIPYLGTFLTDLTMIDTAIPDT+ DGLINFDK+RKEFEVLA+
Sbjct: 385 NISYGTIPYLGTFLTDLTMIDTAIPDTIADGLINFDKRRKEFEVLAR 431

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307173068|gb|EFN64198.1| Ral guanine nucleotide dissociation stimulator-like 1 [Camponotus floridanus]

 Score = 91.7 bits (226), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 41/47 (87%), Positives = 45/47 (95%)

Query: 22  NVSNGTIPYLGTFLTDLTMIDTAIPDTLPDGLINFDKKRKEFEVLAQ 68
           N+S GTIPYLGTFLTDLTMIDTAIPDT+ DGLINFDK+RKEFEVLA+
Sbjct: 447 NISYGTIPYLGTFLTDLTMIDTAIPDTIADGLINFDKRRKEFEVLAR 493

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307192833|gb|EFN75893.1| Ral guanine nucleotide dissociation stimulator-like 1 [Harpegnathos saltator]

 Score = 91.7 bits (226), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 41/47 (87%), Positives = 45/47 (95%)

Query: 22  NVSNGTIPYLGTFLTDLTMIDTAIPDTLPDGLINFDKKRKEFEVLAQ 68
           N+S GTIPYLGTFLTDLTMIDTAIPDT+ DGLINFDK+RKEFEVLA+
Sbjct: 446 NISYGTIPYLGTFLTDLTMIDTAIPDTIADGLINFDKRRKEFEVLAR 492

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270004403|gb|EFA00851.1| hypothetical protein TcasGA2_TC003754 [Tribolium castaneum]

 Score = 91.7 bits (226), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 42/51 (82%), Positives = 45/51 (88%)

Query: 18  HDLPNVSNGTIPYLGTFLTDLTMIDTAIPDTLPDGLINFDKKRKEFEVLAQ 68
           H   N+S GTIPYLGTFLTDLTMIDTAIPD + DGLINFDK+RKEFEVLAQ
Sbjct: 458 HHTANISFGTIPYLGTFLTDLTMIDTAIPDVIGDGLINFDKRRKEFEVLAQ 508

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322786104|gb|EFZ12713.1| hypothetical protein SINV_07892 [Solenopsis invicta]

 Score = 91.3 bits (225), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 41/47 (87%), Positives = 45/47 (95%)

Query: 22  NVSNGTIPYLGTFLTDLTMIDTAIPDTLPDGLINFDKKRKEFEVLAQ 68
           N+S GTIPYLGTFLTDLTMIDTAIPDT+ DGLINFDK+RKEFEVLA+
Sbjct: 351 NISYGTIPYLGTFLTDLTMIDTAIPDTIADGLINFDKRRKEFEVLAR 397

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189235637|ref|XP_967498.2| PREDICTED: similar to ral guanine nucleotide exchange factor, putative [Tribolium castaneum]

 Score = 91.3 bits (225), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 42/51 (82%), Positives = 45/51 (88%)

Query: 18  HDLPNVSNGTIPYLGTFLTDLTMIDTAIPDTLPDGLINFDKKRKEFEVLAQ 68
           H   N+S GTIPYLGTFLTDLTMIDTAIPD + DGLINFDK+RKEFEVLAQ
Sbjct: 396 HHTANISFGTIPYLGTFLTDLTMIDTAIPDVIGDGLINFDKRRKEFEVLAQ 446

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|321470865|gb|EFX81840.1| hypothetical protein DAPPUDRAFT_49847 [Daphnia pulex]

 Score = 90.9 bits (224), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 40/46 (86%), Positives = 44/46 (95%)

Query: 23  VSNGTIPYLGTFLTDLTMIDTAIPDTLPDGLINFDKKRKEFEVLAQ 68
           +S+GTIPYLGTFLTDLTM+DTAIPDT  DGLINFDK+RKEFEVLAQ
Sbjct: 417 ISHGTIPYLGTFLTDLTMVDTAIPDTTADGLINFDKRRKEFEVLAQ 462

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242013894|ref|XP_002427635.1| ral guanine nucleotide exchange factor, putative [Pediculus humanus corporis] gi|212512056|gb|EEB14897.1| ral guanine nucleotide exchange factor, putative [Pediculus humanus corporis]

 Score = 90.9 bits (224), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 41/53 (77%), Positives = 49/53 (92%)

Query: 16  KLHDLPNVSNGTIPYLGTFLTDLTMIDTAIPDTLPDGLINFDKKRKEFEVLAQ 68
           +L++   +S+GTIPYLGTFLTDLTMIDTAIPDT+ +GLINFDK+RKEFEVLAQ
Sbjct: 369 RLNNAGTISHGTIPYLGTFLTDLTMIDTAIPDTVAEGLINFDKRRKEFEVLAQ 421

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350404678|ref|XP_003487183.1| PREDICTED: ral guanine nucleotide dissociation stimulator-like [Bombus impatiens]

 Score = 90.5 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 40/47 (85%), Positives = 45/47 (95%)

Query: 22  NVSNGTIPYLGTFLTDLTMIDTAIPDTLPDGLINFDKKRKEFEVLAQ 68
           N+S GTIPYLGTFLTDLTMIDTAIPDT+ +GLINFDK+RKEFEVLA+
Sbjct: 520 NISYGTIPYLGTFLTDLTMIDTAIPDTIAEGLINFDKRRKEFEVLAR 566

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345495570|ref|XP_001604867.2| PREDICTED: ral guanine nucleotide dissociation stimulator-like [Nasonia vitripennis]

 Score = 90.5 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 40/47 (85%), Positives = 45/47 (95%)

Query: 22  NVSNGTIPYLGTFLTDLTMIDTAIPDTLPDGLINFDKKRKEFEVLAQ 68
           N+S GTIPYLGTFLTDLTMIDTAIPDT+ +GLINFDK+RKEFEVLA+
Sbjct: 444 NISYGTIPYLGTFLTDLTMIDTAIPDTIAEGLINFDKRRKEFEVLAR 490

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	68
ZFIN|ZDB-GENE-040426-1816	804	rgl1 "ral guanine nucleotide d	0.632	0.053	0.767	6.4e-13
RGD|1308947	672	Rgl1 "ral guanine nucleotide d	0.823	0.083	0.607	1.3e-12
UNIPROTKB|F1N644	723	RGL1 "Uncharacterized protein"	0.823	0.077	0.607	1.5e-12
UNIPROTKB|F1S655	723	RGL1 "Uncharacterized protein"	0.823	0.077	0.607	1.5e-12
UNIPROTKB|B7Z2W5	766	RGL1 "cDNA FLJ50518, highly si	0.823	0.073	0.607	1.6e-12
UNIPROTKB|E1BT90	768	RGL1 "Uncharacterized protein"	0.823	0.072	0.607	1.6e-12
UNIPROTKB|Q5ZIY0	768	RGL1 "Uncharacterized protein"	0.823	0.072	0.607	1.6e-12
UNIPROTKB|F1PB01	768	RGL1 "Uncharacterized protein"	0.823	0.072	0.607	1.6e-12
UNIPROTKB|Q9NZL6	768	RGL1 "Ral guanine nucleotide d	0.823	0.072	0.607	1.6e-12
MGI|MGI:107484	768	Rgl1 "ral guanine nucleotide d	0.823	0.072	0.607	1.6e-12

ZFIN|ZDB-GENE-040426-1816 rgl1 "ral guanine nucleotide dissociation stimulator-like 1" [Danio rerio (taxid:7955)]

 Score = 182 (69.1 bits), Expect = 6.4e-13, P = 6.4e-13
 Identities = 33/43 (76%), Positives = 40/43 (93%)

Query:    26 GTIPYLGTFLTDLTMIDTAIPDTLPDGLINFDKKRKEFEVLAQ 68
             GTIPYLGTFLTDLTM+DTA+PD +  GLINF+K+R+EFEV+AQ
Sbjct:   453 GTIPYLGTFLTDLTMLDTALPDQVEGGLINFEKRRREFEVIAQ 495

GO:0051056 "regulation of small GTPase mediated signal transduction" evidence=IEA

GO:0005085 "guanyl-nucleotide exchange factor activity" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

RGD|1308947 Rgl1 "ral guanine nucleotide dissociation stimulator,-like 1" [Rattus norvegicus (taxid:10116)]

 Score = 178 (67.7 bits), Expect = 1.3e-12, P = 1.3e-12
 Identities = 34/56 (60%), Positives = 44/56 (78%)

Query:    13 RDVKLHDLPNVSNGTIPYLGTFLTDLTMIDTAIPDTLPDGLINFDKKRKEFEVLAQ 68
             R ++L     V  GT+PYLGTFLTDLTM+DTA+ D +  GLINF+K+R+EFEV+AQ
Sbjct:   306 RRLQLQKDMGVMQGTVPYLGTFLTDLTMLDTALQDYIEGGLINFEKRRREFEVIAQ 361

GO:0005085 "guanyl-nucleotide exchange factor activity" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

UNIPROTKB|F1N644 RGL1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 178 (67.7 bits), Expect = 1.5e-12, P = 1.5e-12
 Identities = 34/56 (60%), Positives = 44/56 (78%)

Query:    13 RDVKLHDLPNVSNGTIPYLGTFLTDLTMIDTAIPDTLPDGLINFDKKRKEFEVLAQ 68
             R ++L     V  GT+PYLGTFLTDLTM+DTA+ D +  GLINF+K+R+EFEV+AQ
Sbjct:   357 RRLQLQKDMGVMQGTVPYLGTFLTDLTMLDTALQDYIEGGLINFEKRRREFEVIAQ 412

GO:0005085 "guanyl-nucleotide exchange factor activity" evidence=IEA

GO:0051056 "regulation of small GTPase mediated signal transduction" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

UNIPROTKB|F1S655 RGL1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 178 (67.7 bits), Expect = 1.5e-12, P = 1.5e-12
 Identities = 34/56 (60%), Positives = 44/56 (78%)

Query:    13 RDVKLHDLPNVSNGTIPYLGTFLTDLTMIDTAIPDTLPDGLINFDKKRKEFEVLAQ 68
             R ++L     V  GT+PYLGTFLTDLTM+DTA+ D +  GLINF+K+R+EFEV+AQ
Sbjct:   357 RRLQLQKDMGVMQGTVPYLGTFLTDLTMLDTALQDYIEGGLINFEKRRREFEVIAQ 412

GO:0005085 "guanyl-nucleotide exchange factor activity" evidence=IEA

GO:0051056 "regulation of small GTPase mediated signal transduction" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

UNIPROTKB|B7Z2W5 RGL1 "cDNA FLJ50518, highly similar to Ral guanine nucleotide dissociation stimulator-like 1" [Homo sapiens (taxid:9606)]

 Score = 178 (67.7 bits), Expect = 1.6e-12, P = 1.6e-12
 Identities = 34/56 (60%), Positives = 44/56 (78%)

Query:    13 RDVKLHDLPNVSNGTIPYLGTFLTDLTMIDTAIPDTLPDGLINFDKKRKEFEVLAQ 68
             R ++L     V  GT+PYLGTFLTDLTM+DTA+ D +  GLINF+K+R+EFEV+AQ
Sbjct:   400 RRLQLQKDMGVMQGTVPYLGTFLTDLTMLDTALQDYIEGGLINFEKRRREFEVIAQ 455

GO:0005622 "intracellular" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0051056 "regulation of small GTPase mediated signal transduction" evidence=IEA

GO:0005085 "guanyl-nucleotide exchange factor activity" evidence=IEA

UNIPROTKB|E1BT90 RGL1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 178 (67.7 bits), Expect = 1.6e-12, P = 1.6e-12
 Identities = 34/56 (60%), Positives = 44/56 (78%)

Query:    13 RDVKLHDLPNVSNGTIPYLGTFLTDLTMIDTAIPDTLPDGLINFDKKRKEFEVLAQ 68
             R ++L     V  GT+PYLGTFLTDLTM+DTA+ D +  GLINF+K+R+EFEV+AQ
Sbjct:   402 RRLQLQKDMGVMQGTVPYLGTFLTDLTMLDTALQDYIEGGLINFEKRRREFEVIAQ 457

GO:0005622 "intracellular" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0051056 "regulation of small GTPase mediated signal transduction" evidence=IEA

GO:0005085 "guanyl-nucleotide exchange factor activity" evidence=IEA

UNIPROTKB|Q5ZIY0 RGL1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 178 (67.7 bits), Expect = 1.6e-12, P = 1.6e-12
 Identities = 34/56 (60%), Positives = 44/56 (78%)

Query:    13 RDVKLHDLPNVSNGTIPYLGTFLTDLTMIDTAIPDTLPDGLINFDKKRKEFEVLAQ 68
             R ++L     V  GT+PYLGTFLTDLTM+DTA+ D +  GLINF+K+R+EFEV+AQ
Sbjct:   402 RRLQLQKDMGVMQGTVPYLGTFLTDLTMLDTALQDYIEGGLINFEKRRREFEVIAQ 457

GO:0005622 "intracellular" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0051056 "regulation of small GTPase mediated signal transduction" evidence=IEA

GO:0005085 "guanyl-nucleotide exchange factor activity" evidence=IEA

UNIPROTKB|F1PB01 RGL1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 178 (67.7 bits), Expect = 1.6e-12, P = 1.6e-12
 Identities = 34/56 (60%), Positives = 44/56 (78%)

Query:    13 RDVKLHDLPNVSNGTIPYLGTFLTDLTMIDTAIPDTLPDGLINFDKKRKEFEVLAQ 68
             R ++L     V  GT+PYLGTFLTDLTM+DTA+ D +  GLINF+K+R+EFEV+AQ
Sbjct:   402 RRLQLQKDMGVMQGTVPYLGTFLTDLTMLDTALQDYIEGGLINFEKRRREFEVIAQ 457

GO:0005085 "guanyl-nucleotide exchange factor activity" evidence=IEA

GO:0051056 "regulation of small GTPase mediated signal transduction" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

UNIPROTKB|Q9NZL6 RGL1 "Ral guanine nucleotide dissociation stimulator-like 1" [Homo sapiens (taxid:9606)]

 Score = 178 (67.7 bits), Expect = 1.6e-12, P = 1.6e-12
 Identities = 34/56 (60%), Positives = 44/56 (78%)

Query:    13 RDVKLHDLPNVSNGTIPYLGTFLTDLTMIDTAIPDTLPDGLINFDKKRKEFEVLAQ 68
             R ++L     V  GT+PYLGTFLTDLTM+DTA+ D +  GLINF+K+R+EFEV+AQ
Sbjct:   402 RRLQLQKDMGVMQGTVPYLGTFLTDLTMLDTALQDYIEGGLINFEKRRREFEVIAQ 457

GO:0051056 "regulation of small GTPase mediated signal transduction" evidence=IEA

GO:0008321 "Ral guanyl-nucleotide exchange factor activity" evidence=NAS

GO:0007264 "small GTPase mediated signal transduction" evidence=NAS

GO:0005575 "cellular_component" evidence=ND

GO:0005829 "cytosol" evidence=TAS

GO:0044255 "cellular lipid metabolic process" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

MGI|MGI:107484 Rgl1 "ral guanine nucleotide dissociation stimulator,-like 1" [Mus musculus (taxid:10090)]

 Score = 178 (67.7 bits), Expect = 1.6e-12, P = 1.6e-12
 Identities = 34/56 (60%), Positives = 44/56 (78%)

Query:    13 RDVKLHDLPNVSNGTIPYLGTFLTDLTMIDTAIPDTLPDGLINFDKKRKEFEVLAQ 68
             R ++L     V  GT+PYLGTFLTDLTM+DTA+ D +  GLINF+K+R+EFEV+AQ
Sbjct:   402 RRLQLQKDMGVMQGTVPYLGTFLTDLTMLDTALQDYIEGGLINFEKRRREFEVIAQ 457

GO:0005085 "guanyl-nucleotide exchange factor activity" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0051056 "regulation of small GTPase mediated signal transduction" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9NZL6	RGL1_HUMAN	No assigned EC number	0.6071	0.8235	0.0729	yes	N/A
Q6P112	RGL1_DANRE	No assigned EC number	0.7674	0.6323	0.0534	yes	N/A
Q60695	RGL1_MOUSE	No assigned EC number	0.6071	0.8235	0.0729	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	68
cd00155	237	cd00155, RasGEF, Guanine nucleotide exchange facto	6e-16
pfam00617	185	pfam00617, RasGEF, RasGEF domain	2e-14
smart00147	242	smart00147, RasGEF, Guanine nucleotide exchange fa	2e-14

>gnl|CDD|238087 cd00155, RasGEF, Guanine nucleotide exchange factor for Ras-like small GTPases

 Score = 68.0 bits (167), Expect = 6e-16
 Identities = 18/47 (38%), Positives = 28/47 (59%)

Query: 22  NVSNGTIPYLGTFLTDLTMIDTAIPDTLPDGLINFDKKRKEFEVLAQ 68
             +   +P+LG +L DLT +    PD L   L+NF+K+RK  E+L +
Sbjct: 151 GPNPPCVPFLGVYLKDLTFLHEGNPDFLEGNLVNFEKRRKIAEILRE 197

Small GTP-binding proteins of the Ras superfamily function as molecular switches in fundamental events such as signal transduction, cytoskeleton dynamics and intracellular trafficking. Guanine-nucleotide-exchange factors (GEFs) positively regulate these GTP-binding proteins in response to a variety of signals. GEFs catalyze the dissociation of GDP from the inactive GTP-binding proteins. GTP can then bind and induce structural changes that allow interaction with effectors. Length = 237

>gnl|CDD|216025 pfam00617, RasGEF, RasGEF domain

 Score = 63.7 bits (156), Expect = 2e-14
 Identities = 21/42 (50%), Positives = 28/42 (66%)

Query: 20  LPNVSNGTIPYLGTFLTDLTMIDTAIPDTLPDGLINFDKKRK 61
           L   +   IP+LG +L DLT I+   PD L +GLINF+K+RK
Sbjct: 144 LKKANPPCIPFLGLYLKDLTFIEEGNPDFLDNGLINFEKRRK 185

Guanine nucleotide exchange factor for Ras-like small GTPases. Length = 185

>gnl|CDD|214539 smart00147, RasGEF, Guanine nucleotide exchange factor for Ras-like small GTPases

 Score = 63.8 bits (156), Expect = 2e-14
 Identities = 21/43 (48%), Positives = 29/43 (67%)

Query: 26  GTIPYLGTFLTDLTMIDTAIPDTLPDGLINFDKKRKEFEVLAQ 68
             IP+LG  L DLT ID   PD L +GL+NF+K+R+  E+L +
Sbjct: 154 PCIPFLGVLLKDLTFIDEGNPDFLENGLVNFEKRRQIAEILRE 196

Length = 242

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	68
KOG3629|consensus	728		99.5
smart00147	242	RasGEF Guanine nucleotide exchange factor for Ras-	99.46
cd00155	237	RasGEF Guanine nucleotide exchange factor for Ras-	99.42
PF00617	188	RasGEF: RasGEF domain; InterPro: IPR001895 Ras pro	99.37
KOG2378|consensus	573		98.85
KOG3417|consensus	840		98.75
KOG3542|consensus	1283		98.12
KOG3417|consensus	840		97.58
KOG3541|consensus	477		96.38

>KOG3629|consensus

Probab=99.50  E-value=5.6e-15  Score=115.45  Aligned_cols=45  Identities=69%  Similarity=1.125  Sum_probs=42.7

Q ss_pred             CCCCccchhchhchhhhhhccCCCCCCCCccchhhhHhHHhhhcC
Q psy15696         24 SNGTIPYLGTFLTDLTMIDTAIPDTLPDGLINFDKKRKEFEVLAQ   68 (68)
Q Consensus        24 ~~pciPflG~~L~DLtfid~gnpd~l~~~lINf~K~~k~~~vi~~   68 (68)
                      +.+.|||||+|||||+|+|++++|++++|+|||+||||+++||.|
T Consensus       385 ~qGtVPyLGtFLtDLvMlDtA~~d~~e~glINFeKRRkEFeVla~  429 (728)
T KOG3629|consen  385 KQGTVPYLGTFLTDLVMLDTAMNDYPEEGLINFEKRRKEFEVLAK  429 (728)
T ss_pred             CCcccchHHHHHHHHHHHhhcccCCcccccchHhhhhHHHHHHHH
Confidence            468999999999999999999999999999999999999999864

>smart00147 RasGEF Guanine nucleotide exchange factor for Ras-like small GTPases

Probab=99.46  E-value=9.7e-15  Score=100.28  Aligned_cols=62  Identities=34%  Similarity=0.530  Sum_probs=52.9

Q ss_pred             eeecCcchhhccccCCCCCCCCccchhchhchhhhhhccCCCCCCCCccchhhhHhHHhhhc
Q psy15696          6 IAYGSVCRDVKLHDLPNVSNGTIPYLGTFLTDLTMIDTAIPDTLPDGLINFDKKRKEFEVLA   67 (68)
Q Consensus         6 ~~~~~n~~r~r~~~~~~~~~pciPflG~~L~DLtfid~gnpd~l~~~lINf~K~~k~~~vi~   67 (68)
                      +...+|++..|........+|||||+|+||+|++++++|+|++.++++|||.|+++++++++
T Consensus       134 ~s~~~n~~~yR~~l~~~~~~p~IP~lg~~l~dl~~~~~~~~~~~~~~~iNf~k~~~i~~~i~  195 (242)
T smart00147      134 LSPERNFKNYREALSSCNLPPCVPFLGVLLKDLTFIDEGNPDFLENGLVNFEKRRKIAEILR  195 (242)
T ss_pred             cCChhHHHHHHHHHHhcCCCCCccchHHHHHHHHHHHccCcccccCCcccHHHHHHHHHHHH
Confidence            44567888777655333338999999999999999999999999889999999999999885

>cd00155 RasGEF Guanine nucleotide exchange factor for Ras-like small GTPases

Probab=99.42  E-value=3e-14  Score=97.25  Aligned_cols=62  Identities=29%  Similarity=0.487  Sum_probs=52.5

Q ss_pred             eeecCcchhhccccCCC-CCCCCccchhchhchhhhhhccCCCCCCCCccchhhhHhHHhhhc
Q psy15696          6 IAYGSVCRDVKLHDLPN-VSNGTIPYLGTFLTDLTMIDTAIPDTLPDGLINFDKKRKEFEVLA   67 (68)
Q Consensus         6 ~~~~~n~~r~r~~~~~~-~~~pciPflG~~L~DLtfid~gnpd~l~~~lINf~K~~k~~~vi~   67 (68)
                      +...+|++..|...... ..+|||||+|+||+||+++++|+|+++++++|||.|+++++++++
T Consensus       134 ~~~~~n~~~yr~~l~~~~~~~p~IP~lg~~l~dl~~~~e~~~~~~~~~~iN~~K~~~i~~~i~  196 (237)
T cd00155         134 VDPSRNFKNYRKLLKSVGPNPPCVPFLGVYLKDLTFLHEGNPDFLEGNLVNFEKRRKIAEILR  196 (237)
T ss_pred             hCcHhhHHHHHHHHHhcCCCCCCeeehhHHHHHHHHHHccCCccCcCCCccHHHHHHHHHHHH
Confidence            34456887776655332 278999999999999999999999999989999999999999985

Small GTP-binding proteins of the Ras superfamily function as molecular switches in fundamental events such as signal transduction, cytoskeleton dynamics and intracellular trafficking. Guanine-nucleotide-exchange factors (GEFs) positively regulate these GTP-binding proteins in response to a variety of signals. GEFs catalyze the dissociation of GDP from the inactive GTP-binding proteins. GTP can then bind and induce structural changes that allow interaction with effectors.

>PF00617 RasGEF: RasGEF domain; InterPro: IPR001895 Ras proteins are membrane-associated molecular switches that bind GTP and GDP and slowly hydrolyze GTP to GDP []

Probab=99.37  E-value=5e-14  Score=92.23  Aligned_cols=54  Identities=37%  Similarity=0.610  Sum_probs=42.4

Q ss_pred             eecCcchhhccccCCCCCC-CCccchhchhchhhhhhccCCCCCCCCccchhhhHh
Q psy15696          7 AYGSVCRDVKLHDLPNVSN-GTIPYLGTFLTDLTMIDTAIPDTLPDGLINFDKKRK   61 (68)
Q Consensus         7 ~~~~n~~r~r~~~~~~~~~-pciPflG~~L~DLtfid~gnpd~l~~~lINf~K~~k   61 (68)
                      ..++|++..|... .++.+ |||||+|+||+|++++++|+|+++++++|||.|+||
T Consensus       134 ~~~~~~~~yr~~~-~~~~~~~~IP~lg~~l~dl~~~~~~~~~~~~~~liN~~K~r~  188 (188)
T PF00617_consen  134 SPSNNYKNYREAL-KKCNPQPCIPFLGIFLKDLIFIEEGNPDFIDDGLINFEKCRK  188 (188)
T ss_dssp             HHHHHHHHHHHHH-HTSTSSSSB--HHHHHHHHHHHHHHS-SECTTTCEEHHHHHH
T ss_pred             ccchhhHHHHHhh-cccccCceecccHHHHHHHHHHHhcCCCCCCCccCCcccccC
Confidence            3456777777544 34455 999999999999999999999999989999999986

The balance between the GTP bound (active) and GDP bound (inactive) states is regulated by the opposite action of proteins activating the GTPase activity and that of proteins which promote the loss of bound GDP and the uptake of fresh GTP [, ]. The latter proteins are known as guanine-nucleotide dissociation stimulators (GDSs) (or also as guanine-nucleotide releasing (or exchange) factors (GRFs)). Proteins that act as GDS can be classified into at least two families, on the basis of sequence similarities, the CDC24 family (see IPR001331 from INTERPRO) and the CDC25 family. The size of the proteins of the CDC25 family range from 309 residues (LTE1) to 1596 residues (sos). The sequence similarity shared by all these proteins is limited to a region of about 250 amino acids generally located in their C-terminal section (currently the only exceptions are sos and ralGDS where this domain makes up the central part of the protein). This domain has been shown, in CDC25 an SCD25, to be essential for the activity of these proteins.; GO: 0005085 guanyl-nucleotide exchange factor activity, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IJE_S 3T6G_A 1NVW_S 1BKD_S 1XDV_A 2II0_A 1NVU_S 1NVX_S 1NVV_S 1XD4_B ....

>KOG2378|consensus

Probab=98.85  E-value=4.5e-10  Score=86.89  Aligned_cols=46  Identities=28%  Similarity=0.429  Sum_probs=42.4

Q ss_pred             CCCCCCCccchhchhchhhhhhccCCCCCCCCccchhhhHhHHhhhc
Q psy15696         21 PNVSNGTIPYLGTFLTDLTMIDTAIPDTLPDGLINFDKKRKEFEVLA   67 (68)
Q Consensus        21 ~~~~~pciPflG~~L~DLtfid~gnpd~l~~~lINf~K~~k~~~vi~   67 (68)
                      ++.+||.|||....|+|+||+++||..+++ |++||+|+++++++.+
T Consensus       480 ~km~pp~ipf~PlllkD~tf~heGnkt~v~-glVNfEKmhmiA~~~R  525 (573)
T KOG2378|consen  480 SKMSPPYIPFMPLLLKDLTFIHEGNKTFVD-GLVNFEKMHMIAKTAR  525 (573)
T ss_pred             HhcCCCCCCccchhhhhceeeccchHHHHh-cchhHHHHHHHHHHHH
Confidence            457899999999999999999999999998 7999999999998753

>KOG3417|consensus

Probab=98.75  E-value=2.9e-09  Score=85.09  Aligned_cols=63  Identities=25%  Similarity=0.365  Sum_probs=47.3

Q ss_pred             eeeecCcchhhccccCCCCCCCCccchhchhchhhhhhccCCCCCCC--CccchhhhHhHHhhhc
Q psy15696          5 VIAYGSVCRDVKLHDLPNVSNGTIPYLGTFLTDLTMIDTAIPDTLPD--GLINFDKKRKEFEVLA   67 (68)
Q Consensus         5 ~~~~~~n~~r~r~~~~~~~~~pciPflG~~L~DLtfid~gnpd~l~~--~lINf~K~~k~~~vi~   67 (68)
                      +.+.-.|..+.|......+.+||+||+|++|+||||+++||||++++  +.++|.|+.++..+++
T Consensus       728 ~~~~~~~~~~~~~~~~s~~~~~cvP~~~~~l~dltf~~~gnpd~~~~~~~~~~~~~~~~~~~~~~  792 (840)
T KOG3417|consen  728 LVIDKSNSSTYRRALLSVPEPPCVPFLGVILQDLTFVHTGNPDYLDSVVNHGKFDKRTNIKDIVQ  792 (840)
T ss_pred             chhcccccHHHHHHHhcCCCCCCcCceeEEeecceeecCCCCCccccccchhHHHHHHHHHHHHH
Confidence            34444566666666556688999999999999999999999999974  5666666666665553

>KOG3542|consensus

Probab=98.12  E-value=7.7e-07  Score=72.48  Aligned_cols=56  Identities=21%  Similarity=0.273  Sum_probs=45.6

Q ss_pred             cchhhccccCC-CCCCCCccchhchhchhhhhhccCCCCCCCCccchhhhHhHHhhhc
Q psy15696         11 VCRDVKLHDLP-NVSNGTIPYLGTFLTDLTMIDTAIPDTLPDGLINFDKKRKEFEVLA   67 (68)
Q Consensus        11 n~~r~r~~~~~-~~~~pciPflG~~L~DLtfid~gnpd~l~~~lINf~K~~k~~~vi~   67 (68)
                      |-.+.|.+..+ ...||.||.+.+.=+||||+|+||..+++ ++|||+|.|++++-|+
T Consensus      1000 NMaKYRn~L~sq~~qPPiiPlfPViKKDlTFlHeGNdskvd-gLvNFEKLRmIaKeIR 1056 (1283)
T KOG3542|consen 1000 NMAKYRNHLASQAQQPPIIPLFPVIKKDLTFLHEGNDSKVD-GLVNFEKLRMIAKEIR 1056 (1283)
T ss_pred             hHHHHHHHHHhhccCCCccccchheeccceeeecCCchhhh-ccccHHHHHHHHHHHH
Confidence            43444443332 25689999999999999999999999998 7999999999998775

>KOG3417|consensus

Probab=97.58  E-value=2e-05  Score=63.36  Aligned_cols=64  Identities=22%  Similarity=0.349  Sum_probs=53.6

Q ss_pred             eeeeecCcchhhccccCCCCCCCCccchhchhch-hhhhhccCCCCCC-CC--ccchhhhHhHHhhhc
Q psy15696          4 DVIAYGSVCRDVKLHDLPNVSNGTIPYLGTFLTD-LTMIDTAIPDTLP-DG--LINFDKKRKEFEVLA   67 (68)
Q Consensus         4 ~~~~~~~n~~r~r~~~~~~~~~pciPflG~~L~D-Ltfid~gnpd~l~-~~--lINf~K~~k~~~vi~   67 (68)
                      .+++.++|+...|.....-...||+|++|+||.| ++.++.++|+++. .+  .++|.|+..+++|++
T Consensus       342 ~~~~~~~~~~~yr~~l~~~~~~~~ip~~~~~l~d~~~~l~~~~p~~~~~~~~~e~~~~~~~~~~~i~~  409 (840)
T KOG3417|consen  342 ELTSLLDNVQNYRRYLQSCNISPCIPILGVYLLDSLVKLNEALPTKLLRIGERELSFSKLKVLLEIIS  409 (840)
T ss_pred             HHhhcchHHHHHHHHhhhcccCccccccccccHHHHHhhhhcCCccccccccccccchhhhHHHHHHH
Confidence            4566778888888877554444999999999999 9999999999996 33  899999999999985

>KOG3541|consensus

Probab=96.38  E-value=0.0023  Score=49.54  Aligned_cols=44  Identities=34%  Similarity=0.364  Sum_probs=39.3

Q ss_pred             CCCCCccchhchhchhhhhhccCCCCCCCCccchhhhHhHHhhh
Q psy15696         23 VSNGTIPYLGTFLTDLTMIDTAIPDTLPDGLINFDKKRKEFEVL   66 (68)
Q Consensus        23 ~~~pciPflG~~L~DLtfid~gnpd~l~~~lINf~K~~k~~~vi   66 (68)
                      .....|||+..||+|+-+|..+.+.++++|.|||.|...+..=+
T Consensus       374 ~ekaviPff~l~Lkdl~~i~~~h~~~l~Nghinf~k~~~i~~ql  417 (477)
T KOG3541|consen  374 PEKAVIPFFTLFLKDLLDISARHRLFLPNGHINFLKFVGIEGQL  417 (477)
T ss_pred             CccccccchhhhHHHHHHHHhhhcccCCCchhHHHHHHhHHhhh
Confidence            45668999999999999999999999999999999998776544

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	68
2ije_S	240	Crystal Structure Of The Cdc25 Domain Of Rasgrf1 Le		3e-05

>pdb|2IJE|S Chain S, Crystal Structure Of The Cdc25 Domain Of Rasgrf1 Length = 240

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 19/41 (46%), Positives = 24/41 (58%)
Query: 20  LPNVSNGTIPYLGTFLTDLTMIDTAIPDTLPDGLINFDKKR 60
           L N     +PYLG +LTDL  I+   P+   DGL+NF K R
Sbjct: 146 LRNCDPPCVPYLGMYLTDLVFIEEGTPNYTEDGLVNFSKMR 186

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	68
2ije_S	240	Guanine nucleotide-releasing protein; rasgrf1, CDC	7e-17
3qxl_A	271	RAS-specific guanine nucleotide-releasing factor;	1e-14
3ksy_A	1049	SOS-1, SON of sevenless homolog 1; RAS, RAS activa	1e-13
2ii0_A	490	SOS-1, SON of sevenless homolog 1; signaling prote	1e-12
2byv_E	999	RAP guanine nucleotide exchange factor 4; EPAC2, C	3e-11
3cf6_E	694	RAP guanine nucleotide exchange factor (GEF) 4; EP	5e-11

>2ije_S Guanine nucleotide-releasing protein; rasgrf1, CDC25 domain, RAS guanine nucleotide releasing FACT specific nucleotide exchange factor; 2.20A {Mus musculus} Length = 240

 Score = 70.0 bits (172), Expect = 7e-17
 Identities = 19/49 (38%), Positives = 27/49 (55%)

Query: 20  LPNVSNGTIPYLGTFLTDLTMIDTAIPDTLPDGLINFDKKRKEFEVLAQ 68
           L N     +PYLG +LTDL  I+   P+   DGL+NF K R    ++ +
Sbjct: 146 LRNCDPPCVPYLGMYLTDLVFIEEGTPNYTEDGLVNFSKMRMISHIIRE 194

>3qxl_A RAS-specific guanine nucleotide-releasing factor; CDC25 domain homology, guanine-nucleotide exchange factor, S GTPase RAL subfamily; 2.24A {Homo sapiens} Length = 271

 Score = 64.7 bits (158), Expect = 1e-14
 Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 1/43 (2%)

Query: 26  GTIPYLGTFLTDLTMIDTAIPDTLPDGLINFDKKRKEFEVLAQ 68
            +IPYLG +L DL  ID+A P +    + N  +  +   +L  
Sbjct: 180 PSIPYLGIYLLDLIYIDSAYPAS-GSIMENEQRSNQMNNILRI 221

>3ksy_A SOS-1, SON of sevenless homolog 1; RAS, RAS activator, disease mutation, guanine-nucleotide releasing factor, signaling protein; 3.18A {Homo sapiens} PDB: 1xd4_A 1xdv_A 1q9c_A Length = 1049

 Score = 62.1 bits (150), Expect = 1e-13
 Identities = 15/52 (28%), Positives = 28/52 (53%), Gaps = 3/52 (5%)

Query: 20  LPNVSNGTIPYLGTFLTDLTMIDTAIPDTLP---DGLINFDKKRKEFEVLAQ 68
           L +++   +P+ G +LT++   +   P+ L      LINF K+RK  E+  +
Sbjct: 919 LRSINPPCVPFFGIYLTNILKTEEGNPEVLKRHGKELINFSKRRKVAEITGE 970

>2ii0_A SOS-1, SON of sevenless homolog 1; signaling protein; 2.02A {Homo sapiens} SCOP: a.117.1.1 PDB: 1xd2_C* 1nvv_S* 1nvu_S* 1nvw_S* 1nvx_S* 1bkd_S Length = 490

 Score = 59.7 bits (144), Expect = 1e-12
 Identities = 15/52 (28%), Positives = 28/52 (53%), Gaps = 3/52 (5%)

Query: 20  LPNVSNGTIPYLGTFLTDLTMIDTAIPDTLP---DGLINFDKKRKEFEVLAQ 68
           L +++   +P+ G +LT++   +   P+ L      LINF K+RK  E+  +
Sbjct: 360 LRSINPPCVPFFGIYLTNILKTEEGNPEVLKRHGKELINFSKRRKVAEITGE 411

>2byv_E RAP guanine nucleotide exchange factor 4; EPAC2, CAMP-GEF2, CAMP, cyclic nucleotide, regulation, auto-inhibition, CDC25 homology domain; 2.7A {Mus musculus} Length = 999

 Score = 55.6 bits (133), Expect = 3e-11
 Identities = 10/49 (20%), Positives = 18/49 (36%), Gaps = 1/49 (2%)

Query: 20  LPNVSNGTIPYLGTFLTDLTMIDTAIPDTLPDGLINFDKKRKEFEVLAQ 68
              +    IP++   + D+T         + D L+NF+K R        
Sbjct: 901 AAKLEPPLIPFMPLLIKDMTFTHEGNKTFI-DNLVNFEKMRMIANTART 948

>3cf6_E RAP guanine nucleotide exchange factor (GEF) 4; EPAC, rapgef4, CAMP, SP-camps, GEF, gunanine nucleotide exchange factor, G-protein, GTP-binding, nucleotide-binding; HET: SP1; 2.20A {Mus musculus} Length = 694

 Score = 54.8 bits (131), Expect = 5e-11
 Identities = 10/49 (20%), Positives = 18/49 (36%), Gaps = 1/49 (2%)

Query: 20  LPNVSNGTIPYLGTFLTDLTMIDTAIPDTLPDGLINFDKKRKEFEVLAQ 68
              +    IP++   + D+T         + D L+NF+K R        
Sbjct: 596 AAKLEPPLIPFMPLLIKDMTFTHEGNKTFI-DNLVNFEKMRMIANTART 643

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	68
2ije_S	240	Guanine nucleotide-releasing protein; rasgrf1, CDC	99.72
4f7z_A	999	RAP guanine nucleotide exchange factor 4; cyclic n	99.63
2ii0_A	490	SOS-1, SON of sevenless homolog 1; signaling prote	99.57
3cf6_E	694	RAP guanine nucleotide exchange factor (GEF) 4; EP	99.53
3qxl_A	271	RAS-specific guanine nucleotide-releasing factor;	99.53
3ksy_A	1049	SOS-1, SON of sevenless homolog 1; RAS, RAS activa	99.48

>2ije_S Guanine nucleotide-releasing protein; rasgrf1, CDC25 domain, RAS guanine nucleotide releasing FACT specific nucleotide exchange factor; 2.20A {Mus musculus}

Probab=99.72  E-value=2.8e-19  Score=123.17  Aligned_cols=61  Identities=30%  Similarity=0.551  Sum_probs=53.4

Q ss_pred             eeecCcchhhccccCCCCCCCCccchhchhchhhhhhccCCCCCCCCccchhhhHhHHhhhc
Q psy15696          6 IAYGSVCRDVKLHDLPNVSNGTIPYLGTFLTDLTMIDTAIPDTLPDGLINFDKKRKEFEVLA   67 (68)
Q Consensus         6 ~~~~~n~~r~r~~~~~~~~~pciPflG~~L~DLtfid~gnpd~l~~~lINf~K~~k~~~vi~   67 (68)
                      +..++|++..|... .++.+|||||+|+||+||+|+++||||++++|+|||+|+++++++|+
T Consensus       133 ~~~~~n~~~yR~~l-~~~~~p~IPflg~~L~DL~~i~egnp~~~~~~lINf~K~~~~~~ii~  193 (240)
T 2ije_S          133 VSSDGRFKNLRESL-RNCDPPCVPYLGMYLTDLVFIEEGTPNYTEDGLVNFSKMRMISHIIR  193 (240)
T ss_dssp             TCCHHHHHHHHHHH-HTCCSSCBCCHHHHHHHHHHHHHHSCSBCTTSCBCHHHHHHHHHHHH
T ss_pred             HCccchHHHHHHHH-HhcCCCccCccchHHHHHHHHHhcCCCCCCCCcCcHHHHHHHHHHHH
Confidence            44567888777654 45679999999999999999999999999889999999999999985

>4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E

Probab=99.63  E-value=2e-17  Score=129.14  Aligned_cols=60  Identities=18%  Similarity=0.304  Sum_probs=52.2

Q ss_pred             eeecCcchhhccccCCCCCCCCccchhchhchhhhhhccCCCCCCCCccchhhhHhHHhhhc
Q psy15696          6 IAYGSVCRDVKLHDLPNVSNGTIPYLGTFLTDLTMIDTAIPDTLPDGLINFDKKRKEFEVLA   67 (68)
Q Consensus         6 ~~~~~n~~r~r~~~~~~~~~pciPflG~~L~DLtfid~gnpd~l~~~lINf~K~~k~~~vi~   67 (68)
                      +....|++..|... .++.+|||||+|+||+||||+++||||+++ ++|||+|+++++++|+
T Consensus       888 ~~~~~n~~~yr~~l-~~~~~p~iP~~g~~l~dl~~~~~gn~~~~~-~linf~k~~~~~~~i~  947 (999)
T 4f7z_A          888 MDPSRNHRAYRLTA-AKLEPPLIPFMPLLIKDMTFTHEGNKTFID-NLVNFEKMRMIANTAR  947 (999)
T ss_dssp             TCCHHHHHHHHHHH-HTCCSSCBCCHHHHHHHHHHHHHTSCSBSS-SSEEHHHHHHHHHHHH
T ss_pred             cCCcccHHHHHHHH-HhCCCCeeceehHHHHHHHHHhccCCCCCC-CcCcHHHHHHHHHHHH
Confidence            44566888777544 557899999999999999999999999997 7999999999999985

>2ii0_A SOS-1, SON of sevenless homolog 1; signaling protein; 2.02A {Homo sapiens} SCOP: a.117.1.1 PDB: 1xd2_C* 1nvv_S* 1nvu_S* 1nvw_S* 1nvx_S* 1bkd_S

Probab=99.57  E-value=1.1e-16  Score=119.38  Aligned_cols=58  Identities=24%  Similarity=0.448  Sum_probs=49.3

Q ss_pred             cCcchhhccccCCCCCCCCccchhchhchhhhhhccCCCCCCCC---ccchhhhHhHHhhhc
Q psy15696          9 GSVCRDVKLHDLPNVSNGTIPYLGTFLTDLTMIDTAIPDTLPDG---LINFDKKRKEFEVLA   67 (68)
Q Consensus         9 ~~n~~r~r~~~~~~~~~pciPflG~~L~DLtfid~gnpd~l~~~---lINf~K~~k~~~vi~   67 (68)
                      .+||+..|... .+..+|||||+|+||+||+|+++||||+++++   +|||+|++++++||+
T Consensus       350 ~~n~~~yR~~l-~~~~~p~IPflg~~L~DL~~i~egnp~~~~~~~~~lINf~K~r~~~~ii~  410 (490)
T 2ii0_A          350 EDHYKKYLAKL-RSINPPCVPFFGIYLTNILKTEEGNPEVLKRHGKELINFSKRRKVAEITG  410 (490)
T ss_dssp             HHHHHHHHHHH-HTCCSSCBCCCHHHHHHHHHHHHTSCSEEEETTEEEEEHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHH-hccCCCcccCcHHHHHHHHHHHhcCCcccCCCCCeEEcHHHHHHHHHHHH
Confidence            45776665544 34679999999999999999999999999754   999999999999985

>3cf6_E RAP guanine nucleotide exchange factor (GEF) 4; EPAC, rapgef4, CAMP, SP-camps, GEF, gunanine nucleotide exchange factor, G-protein, GTP-binding, nucleotide-binding; HET: SP1; 2.20A {Mus musculus}

Probab=99.53  E-value=3e-16  Score=121.05  Aligned_cols=60  Identities=18%  Similarity=0.304  Sum_probs=51.8

Q ss_pred             eeecCcchhhccccCCCCCCCCccchhchhchhhhhhccCCCCCCCCccchhhhHhHHhhhc
Q psy15696          6 IAYGSVCRDVKLHDLPNVSNGTIPYLGTFLTDLTMIDTAIPDTLPDGLINFDKKRKEFEVLA   67 (68)
Q Consensus         6 ~~~~~n~~r~r~~~~~~~~~pciPflG~~L~DLtfid~gnpd~l~~~lINf~K~~k~~~vi~   67 (68)
                      +..+.|++..|... .++.+|||||+|+||+||+|+++||||+++ ++|||+|+++++++++
T Consensus       583 ~~~~~N~~~yR~~l-~~~~~p~IPflg~~L~DL~fi~egn~~~~~-~lINf~K~r~i~~ii~  642 (694)
T 3cf6_E          583 MDPSRNHRAYRLTA-AKLEPPLIPFMPLLIKDMTFTHEGNKTFID-NLVNFEKMRMIANTAR  642 (694)
T ss_dssp             TCCHHHHHHHHHHH-HHSCSSCBCCHHHHHHHHHHHHHHSCSEET-TEEEHHHHHHHHHHHH
T ss_pred             hCccccHHHHHHHH-HhcCCCCcccHHHHHHHHHHHHcCCCchhc-cCcCHHHHHHHHHHHH
Confidence            44567888777654 446799999999999999999999999996 8999999999999985

>3qxl_A RAS-specific guanine nucleotide-releasing factor; CDC25 domain homology, guanine-nucleotide exchange factor, S GTPase RAL subfamily; 2.24A {Homo sapiens}

Probab=99.53  E-value=3.7e-16  Score=109.86  Aligned_cols=62  Identities=23%  Similarity=0.294  Sum_probs=48.9

Q ss_pred             eeeecCcchhhccccCCCCCCCCccchhchhchhhhhhccCCCCCCCCccchhhhHhHHhhhc
Q psy15696          5 VIAYGSVCRDVKLHDLPNVSNGTIPYLGTFLTDLTMIDTAIPDTLPDGLINFDKKRKEFEVLA   67 (68)
Q Consensus         5 ~~~~~~n~~r~r~~~~~~~~~pciPflG~~L~DLtfid~gnpd~l~~~lINf~K~~k~~~vi~   67 (68)
                      ++..++|++..|........+|||||+|+||+||+|+++||||+ .+.++||.|++++.+|++
T Consensus       159 l~~~~~N~~~yR~~l~~~~~~p~IPflg~~L~DL~fi~~g~p~~-~~~l~n~~k~~~~~~i~~  220 (271)
T 3qxl_A          159 LMSKEDNYKRTREYIRSLKMVPSIPYLGIYLLDLIYIDSAYPAS-GSIMENEQRSNQMNNILR  220 (271)
T ss_dssp             HTCCHHHHHHHHHHHHTTTTSCCBCCHHHHHHHHHHHHHHSCSS-SCHHHHHHHHHHHHHHHH
T ss_pred             HcCcchhHHHHHHHHHhcCCCCCCCchHHHHHHHHHHHhcCCCc-ccccccHHHHHHHHHHHH
Confidence            34567788888876544334899999999999999999999998 444567888888877764

>3ksy_A SOS-1, SON of sevenless homolog 1; RAS, RAS activator, disease mutation, guanine-nucleotide releasing factor, signaling protein; 3.18A {Homo sapiens} PDB: 1xd4_A 1xdv_A 1q9c_A

Probab=99.48  E-value=1.7e-15  Score=120.92  Aligned_cols=58  Identities=24%  Similarity=0.452  Sum_probs=50.0

Q ss_pred             cCcchhhccccCCCCCCCCccchhchhchhhhhhccCCCCCCC---CccchhhhHhHHhhhc
Q psy15696          9 GSVCRDVKLHDLPNVSNGTIPYLGTFLTDLTMIDTAIPDTLPD---GLINFDKKRKEFEVLA   67 (68)
Q Consensus         9 ~~n~~r~r~~~~~~~~~pciPflG~~L~DLtfid~gnpd~l~~---~lINf~K~~k~~~vi~   67 (68)
                      .+|++..|... .++.+|||||+|+||+||+|+++||||++++   ++|||+|++++++||+
T Consensus       909 ~~n~~~yR~~l-~~~~~p~IPflg~~L~DL~~i~eg~p~~~~~~~~~lINf~K~~~~~~ii~  969 (1049)
T 3ksy_A          909 EDHYKKYLAKL-RSINPPCVPFFGIYLTNILKTEEGNPEVLKRHGKELINFSKRRKVAEITG  969 (1049)
T ss_dssp             HHHHHHHHHHH-TTCCSSCCCCTHHHHHHHHHHHHHSCSEEEETTEEEEEHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHH-hhCCCCccceeHHHHHHHHHHHccCCccccCCCCCeEcHHHHHHHHHHHH
Confidence            46777666554 4567999999999999999999999999963   7999999999999985

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	68
d1nvus_	481	a.117.1.1 (S:) Son of sevenless protein homolog 1	5e-13

>d1nvus_ a.117.1.1 (S:) Son of sevenless protein homolog 1 (sos-1) {Human (Homo sapiens) [TaxId: 9606]} Length = 481

class: All alpha proteins
fold: Ras GEF
superfamily: Ras GEF
family: Ras GEF
domain: Son of sevenless protein homolog 1 (sos-1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.4 bits (143), Expect = 5e-13
 Identities = 15/52 (28%), Positives = 28/52 (53%), Gaps = 3/52 (5%)

Query: 20  LPNVSNGTIPYLGTFLTDLTMIDTAIPDTLP---DGLINFDKKRKEFEVLAQ 68
           L +++   +P+ G +LT++   +   P+ L      LINF K+RK  E+  +
Sbjct: 354 LRSINPPCVPFFGIYLTNILKTEEGNPEVLKRHGKELINFSKRRKVAEITGE 405

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	68
d1nvus_	481	Son of sevenless protein homolog 1 (sos-1) {Human	99.44

>d1nvus_ a.117.1.1 (S:) Son of sevenless protein homolog 1 (sos-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Ras GEF
superfamily: Ras GEF
family: Ras GEF
domain: Son of sevenless protein homolog 1 (sos-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=1.7e-15  Score=109.71  Aligned_cols=58  Identities=24%  Similarity=0.456  Sum_probs=49.1

Q ss_pred             cCcchhhccccCCCCCCCCccchhchhchhhhhhccCCCCCC---CCccchhhhHhHHhhhc
Q psy15696          9 GSVCRDVKLHDLPNVSNGTIPYLGTFLTDLTMIDTAIPDTLP---DGLINFDKKRKEFEVLA   67 (68)
Q Consensus         9 ~~n~~r~r~~~~~~~~~pciPflG~~L~DLtfid~gnpd~l~---~~lINf~K~~k~~~vi~   67 (68)
                      ++|++..|... .+..+|||||+|+||+||+|+++||||+++   +++|||.|+++++++++
T Consensus       344 ~~n~~~yr~~l-~~~~~p~IP~lg~~l~Dl~~~~~gn~~~~~~~~~~lINf~K~~~i~~~i~  404 (481)
T d1nvus_         344 EDHYKKYLAKL-RSINPPCVPFFGIYLTNILKTEEGNPEVLKRHGKELINFSKRRKVAEITG  404 (481)
T ss_dssp             HHHHHHHHHHH-HHSCSCCBCCSHHHHHHHHHHHHSSCSEEEETTEEEEEHHHHHHHHHHHH
T ss_pred             chhHHHHHHHH-hcCCCCeEeeeccHHHHHHHHHhcCCccccCCCCceEcHHHHHHHHHHHH
Confidence            35777666543 445789999999999999999999999985   47999999999999985